Query 035561
Match_columns 979
No_of_seqs 544 out of 3739
Neff 5.6
Searched_HMMs 46136
Date Fri Mar 29 04:04:41 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/035561.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/035561hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0734 AAA+-type ATPase conta 100.0 1.7E-95 4E-100 815.0 38.4 438 449-951 298-735 (752)
2 KOG0731 AAA+-type ATPase conta 100.0 1.8E-94 4E-99 851.4 31.1 611 89-955 139-753 (774)
3 COG0465 HflB ATP-dependent Zn 100.0 2.6E-92 5.7E-97 822.3 41.5 441 449-952 144-592 (596)
4 CHL00176 ftsH cell division pr 100.0 1.1E-81 2.4E-86 750.7 49.8 520 345-956 103-631 (638)
5 PRK10733 hflB ATP-dependent me 100.0 2.3E-78 5.1E-83 727.5 49.4 443 450-952 147-597 (644)
6 TIGR01241 FtsH_fam ATP-depende 100.0 8.2E-76 1.8E-80 688.1 46.4 440 448-949 48-495 (495)
7 COG1222 RPT1 ATP-dependent 26S 100.0 1.2E-51 2.5E-56 449.6 23.0 235 444-682 140-375 (406)
8 KOG0733 Nuclear AAA ATPase (VC 100.0 7.4E-51 1.6E-55 462.6 23.1 324 448-793 183-576 (802)
9 CHL00206 ycf2 Ycf2; Provisiona 100.0 5.5E-50 1.2E-54 498.6 26.8 316 478-876 1620-1985(2281)
10 KOG0730 AAA+-type ATPase [Post 100.0 1.5E-47 3.3E-52 442.0 19.9 247 447-702 426-673 (693)
11 KOG0733 Nuclear AAA ATPase (VC 100.0 4.9E-47 1.1E-51 431.5 20.2 231 448-683 504-737 (802)
12 KOG0736 Peroxisome assembly fa 100.0 1.2E-42 2.5E-47 404.0 21.8 254 448-707 665-936 (953)
13 PF01434 Peptidase_M41: Peptid 100.0 3.8E-42 8.2E-47 362.8 17.0 204 730-947 1-213 (213)
14 KOG0738 AAA+-type ATPase [Post 100.0 3.1E-41 6.7E-46 369.6 20.5 227 447-683 204-436 (491)
15 KOG0730 AAA+-type ATPase [Post 100.0 9.8E-41 2.1E-45 385.8 21.9 310 450-793 180-499 (693)
16 KOG0728 26S proteasome regulat 100.0 2.4E-40 5.1E-45 345.2 18.7 236 444-683 136-372 (404)
17 KOG0652 26S proteasome regulat 100.0 5.3E-40 1.2E-44 344.1 16.0 233 448-684 164-397 (424)
18 KOG0735 AAA+-type ATPase [Post 100.0 3E-39 6.5E-44 372.5 21.1 230 445-681 657-887 (952)
19 KOG0729 26S proteasome regulat 100.0 2.6E-39 5.7E-44 339.7 16.2 231 447-681 169-400 (435)
20 KOG0727 26S proteasome regulat 100.0 1.3E-38 2.7E-43 332.6 17.7 236 444-683 144-380 (408)
21 KOG0739 AAA+-type ATPase [Post 100.0 9.7E-39 2.1E-43 339.9 16.5 231 441-681 119-352 (439)
22 PTZ00454 26S protease regulato 100.0 7.3E-38 1.6E-42 357.5 23.6 233 446-682 136-369 (398)
23 COG1223 Predicted ATPase (AAA+ 100.0 1.1E-38 2.4E-43 334.6 15.4 212 448-670 114-325 (368)
24 KOG0726 26S proteasome regulat 100.0 8.3E-39 1.8E-43 339.4 13.5 232 447-682 177-409 (440)
25 TIGR01243 CDC48 AAA family ATP 100.0 2.9E-37 6.2E-42 378.0 24.0 229 448-682 446-675 (733)
26 PRK03992 proteasome-activating 100.0 5.8E-37 1.3E-41 350.1 22.1 232 447-682 123-355 (389)
27 KOG0737 AAA+-type ATPase [Post 100.0 9.1E-37 2E-41 335.0 21.7 226 448-682 85-314 (386)
28 COG0464 SpoVK ATPases of the A 100.0 7.7E-37 1.7E-41 358.8 21.8 231 448-683 235-466 (494)
29 CHL00195 ycf46 Ycf46; Provisio 100.0 8.4E-36 1.8E-40 347.5 25.5 249 448-709 221-469 (489)
30 PTZ00361 26 proteosome regulat 100.0 6.3E-36 1.4E-40 344.2 23.1 231 447-681 175-406 (438)
31 TIGR01243 CDC48 AAA family ATP 100.0 1.4E-35 2.9E-40 363.3 23.3 302 449-758 172-497 (733)
32 TIGR01242 26Sp45 26S proteasom 100.0 6.1E-34 1.3E-38 322.5 23.6 230 448-681 115-345 (364)
33 KOG0651 26S proteasome regulat 100.0 6.2E-35 1.3E-39 313.1 11.4 231 447-681 124-355 (388)
34 TIGR03689 pup_AAA proteasome A 100.0 2.8E-33 6.2E-38 326.4 24.6 224 444-678 171-409 (512)
35 KOG0741 AAA+-type ATPase [Post 100.0 9.9E-33 2.1E-37 310.8 16.5 235 447-683 211-459 (744)
36 KOG0732 AAA+-type ATPase conta 100.0 1.5E-31 3.3E-36 324.5 18.6 260 449-714 259-536 (1080)
37 PLN00020 ribulose bisphosphate 100.0 1.2E-30 2.6E-35 289.5 19.3 200 452-662 112-330 (413)
38 KOG0740 AAA+-type ATPase [Post 100.0 2E-30 4.3E-35 293.7 17.4 226 448-683 146-375 (428)
39 KOG0735 AAA+-type ATPase [Post 100.0 6.8E-29 1.5E-33 287.3 18.5 319 455-793 408-732 (952)
40 KOG0736 Peroxisome assembly fa 100.0 2.3E-28 5E-33 285.3 16.5 284 486-793 429-736 (953)
41 COG0464 SpoVK ATPases of the A 99.9 1.1E-21 2.3E-26 231.0 19.9 296 474-795 4-309 (494)
42 PF00004 AAA: ATPase family as 99.9 5.4E-21 1.2E-25 183.1 13.2 130 491-625 1-132 (132)
43 CHL00181 cbbX CbbX; Provisiona 99.8 2.3E-20 5.1E-25 205.7 18.9 208 455-677 23-252 (287)
44 KOG0742 AAA+-type ATPase [Post 99.8 1.5E-20 3.3E-25 207.8 17.0 222 449-682 349-595 (630)
45 KOG0743 AAA+-type ATPase [Post 99.8 6.8E-20 1.5E-24 207.2 19.3 207 451-671 197-412 (457)
46 TIGR02881 spore_V_K stage V sp 99.8 1.2E-19 2.5E-24 197.2 17.7 175 454-642 5-194 (261)
47 TIGR02880 cbbX_cfxQ probable R 99.8 1.6E-19 3.4E-24 198.9 18.3 175 455-642 22-211 (284)
48 KOG0744 AAA+-type ATPase [Post 99.8 3.5E-19 7.6E-24 193.1 14.2 232 454-691 141-408 (423)
49 TIGR02902 spore_lonB ATP-depen 99.8 5.3E-18 1.1E-22 201.4 19.7 252 371-680 3-313 (531)
50 PF05496 RuvB_N: Holliday junc 99.7 2.4E-17 5.2E-22 174.0 16.4 190 449-673 18-223 (233)
51 TIGR02639 ClpA ATP-dependent C 99.7 1.9E-16 4.1E-21 194.9 22.3 192 451-666 178-387 (731)
52 PRK00080 ruvB Holliday junctio 99.7 6.5E-16 1.4E-20 173.2 19.0 195 448-677 18-228 (328)
53 TIGR00635 ruvB Holliday juncti 99.7 7.9E-16 1.7E-20 170.0 18.6 188 453-675 2-205 (305)
54 TIGR00763 lon ATP-dependent pr 99.7 4.7E-16 1E-20 192.4 17.1 166 455-640 320-506 (775)
55 COG2256 MGS1 ATPase related to 99.7 7.6E-16 1.6E-20 172.2 14.7 181 450-670 19-212 (436)
56 PRK11034 clpA ATP-dependent Cl 99.6 5.7E-15 1.2E-19 181.1 20.8 165 453-641 184-364 (758)
57 PRK04195 replication factor C 99.6 5.7E-15 1.2E-19 174.0 19.2 208 445-690 4-218 (482)
58 COG2255 RuvB Holliday junction 99.6 1.5E-14 3.2E-19 155.8 16.6 184 448-665 19-218 (332)
59 PRK14962 DNA polymerase III su 99.6 3.3E-14 7.2E-19 166.6 19.9 176 448-662 7-210 (472)
60 PRK14956 DNA polymerase III su 99.6 2.9E-14 6.3E-19 165.8 18.7 177 448-663 11-215 (484)
61 TIGR03345 VI_ClpV1 type VI sec 99.6 1.5E-14 3.2E-19 180.2 17.2 191 450-665 182-391 (852)
62 PRK12323 DNA polymerase III su 99.6 2.2E-14 4.7E-19 170.6 17.1 192 448-672 9-226 (700)
63 PLN03025 replication factor C 99.6 4E-14 8.7E-19 158.3 18.1 201 447-691 5-217 (319)
64 PRK13342 recombination factor 99.6 4.1E-14 8.9E-19 163.7 18.6 174 448-662 5-188 (413)
65 PRK10865 protein disaggregatio 99.6 2.2E-14 4.7E-19 179.0 16.6 166 451-641 174-356 (857)
66 PRK07003 DNA polymerase III su 99.6 4.6E-14 9.9E-19 169.6 18.5 190 448-669 9-219 (830)
67 PRK12402 replication factor C 99.6 8.7E-14 1.9E-18 155.1 19.5 210 445-691 5-243 (337)
68 PRK14961 DNA polymerase III su 99.6 9.8E-14 2.1E-18 158.1 19.5 194 448-674 9-223 (363)
69 PRK05342 clpX ATP-dependent pr 99.6 8.1E-14 1.8E-18 160.8 18.2 179 457-637 73-323 (412)
70 PRK14960 DNA polymerase III su 99.6 9.6E-14 2.1E-18 165.5 19.1 203 448-692 8-238 (702)
71 CHL00095 clpC Clp protease ATP 99.5 4.9E-14 1.1E-18 175.6 16.9 189 452-665 176-382 (821)
72 PHA02544 44 clamp loader, smal 99.5 6.7E-14 1.5E-18 155.4 16.3 165 444-641 10-175 (316)
73 PRK14958 DNA polymerase III su 99.5 8.9E-14 1.9E-18 164.5 17.9 202 448-691 9-238 (509)
74 PRK14949 DNA polymerase III su 99.5 2.1E-13 4.6E-18 166.6 19.8 192 448-672 9-221 (944)
75 PRK06645 DNA polymerase III su 99.5 2.5E-13 5.5E-18 160.1 19.6 194 448-674 14-232 (507)
76 TIGR03346 chaperone_ClpB ATP-d 99.5 1.1E-13 2.5E-18 172.9 17.2 191 450-665 168-377 (852)
77 PRK14964 DNA polymerase III su 99.5 4.6E-13 9.9E-18 157.1 20.4 203 448-692 6-236 (491)
78 PRK07994 DNA polymerase III su 99.5 3.6E-13 7.7E-18 162.1 19.3 192 448-672 9-221 (647)
79 PRK14963 DNA polymerase III su 99.5 3.6E-13 7.7E-18 159.2 18.6 176 448-662 7-209 (504)
80 PRK07940 DNA polymerase III su 99.5 2.1E-13 4.6E-18 156.6 16.0 191 453-671 3-214 (394)
81 TIGR00362 DnaA chromosomal rep 99.5 4.1E-13 8.9E-18 154.9 18.1 203 449-679 104-318 (405)
82 KOG0989 Replication factor C, 99.5 2E-13 4.3E-18 148.5 14.1 201 445-686 26-242 (346)
83 TIGR00382 clpX endopeptidase C 99.5 5.6E-13 1.2E-17 153.5 18.7 181 456-638 78-330 (413)
84 TIGR02397 dnaX_nterm DNA polym 99.5 1.3E-12 2.8E-17 147.1 21.1 185 448-672 7-219 (355)
85 TIGR03420 DnaA_homol_Hda DnaA 99.5 8.4E-13 1.8E-17 139.2 18.3 190 450-679 10-209 (226)
86 PRK08691 DNA polymerase III su 99.5 4.6E-13 9.9E-18 160.9 18.1 194 448-674 9-223 (709)
87 PRK05563 DNA polymerase III su 99.5 1E-12 2.2E-17 157.3 21.1 186 448-673 9-222 (559)
88 PRK06893 DNA replication initi 99.5 8.4E-13 1.8E-17 141.2 18.0 192 449-676 10-208 (229)
89 KOG2028 ATPase related to the 99.5 3.5E-13 7.5E-18 148.5 15.1 196 449-681 132-347 (554)
90 PRK00149 dnaA chromosomal repl 99.5 5.9E-13 1.3E-17 155.7 17.2 204 449-678 116-329 (450)
91 PRK14969 DNA polymerase III su 99.5 1E-12 2.2E-17 156.3 18.5 193 448-673 9-222 (527)
92 PRK14951 DNA polymerase III su 99.5 1.1E-12 2.5E-17 157.5 18.9 192 448-672 9-226 (618)
93 COG0466 Lon ATP-dependent Lon 99.5 3E-13 6.5E-18 159.9 13.3 166 455-640 323-509 (782)
94 PRK14952 DNA polymerase III su 99.5 1.8E-12 3.9E-17 155.2 20.2 194 448-674 6-222 (584)
95 TIGR00390 hslU ATP-dependent p 99.5 7.6E-13 1.7E-17 151.2 16.2 177 456-636 13-343 (441)
96 PRK07764 DNA polymerase III su 99.5 1.3E-12 2.9E-17 161.6 19.3 194 448-674 8-224 (824)
97 PRK14957 DNA polymerase III su 99.5 2.3E-12 4.9E-17 153.1 19.9 184 448-671 9-220 (546)
98 PRK05896 DNA polymerase III su 99.4 2.1E-12 4.7E-17 153.8 19.0 187 448-674 9-223 (605)
99 PRK05201 hslU ATP-dependent pr 99.4 6.6E-13 1.4E-17 151.7 13.8 177 456-636 16-345 (443)
100 PRK14970 DNA polymerase III su 99.4 2.9E-12 6.2E-17 145.9 18.8 192 448-672 10-210 (367)
101 PRK14959 DNA polymerase III su 99.4 2.4E-12 5.1E-17 154.1 18.8 177 448-663 9-213 (624)
102 PRK14965 DNA polymerase III su 99.4 2.2E-12 4.8E-17 155.0 18.7 184 448-671 9-220 (576)
103 PRK07133 DNA polymerase III su 99.4 4.1E-12 8.9E-17 154.0 20.6 193 448-673 11-221 (725)
104 PRK08903 DnaA regulatory inact 99.4 4.1E-12 8.9E-17 135.0 18.0 186 449-679 12-207 (227)
105 TIGR02928 orc1/cdc6 family rep 99.4 4.4E-12 9.6E-17 143.4 19.4 171 450-641 10-214 (365)
106 PRK10787 DNA-binding ATP-depen 99.4 1E-12 2.2E-17 162.4 14.5 164 456-640 323-507 (784)
107 PRK14088 dnaA chromosomal repl 99.4 2.6E-12 5.5E-17 150.0 16.8 202 449-676 99-310 (440)
108 PRK13341 recombination factor 99.4 2.6E-12 5.7E-17 157.2 17.3 184 448-676 21-219 (725)
109 KOG2004 Mitochondrial ATP-depe 99.4 1.5E-12 3.2E-17 153.3 13.8 165 455-641 411-598 (906)
110 PRK09111 DNA polymerase III su 99.4 6.8E-12 1.5E-16 150.8 19.6 210 448-692 17-252 (598)
111 PRK00440 rfc replication facto 99.4 5.2E-12 1.1E-16 139.7 17.2 204 444-691 6-220 (319)
112 TIGR02640 gas_vesic_GvpN gas v 99.4 1.4E-11 3E-16 134.5 20.3 132 489-639 22-198 (262)
113 PRK08084 DNA replication initi 99.4 1.1E-11 2.4E-16 133.1 19.1 188 449-676 16-214 (235)
114 PRK08451 DNA polymerase III su 99.4 8.4E-12 1.8E-16 147.7 19.4 202 448-691 7-236 (535)
115 PRK14953 DNA polymerase III su 99.4 7.2E-12 1.6E-16 147.7 18.7 210 448-692 9-239 (486)
116 PRK00411 cdc6 cell division co 99.4 1.6E-11 3.5E-16 140.4 21.1 197 451-669 26-249 (394)
117 PF05673 DUF815: Protein of un 99.4 1.7E-11 3.7E-16 131.4 19.3 162 450-642 22-210 (249)
118 PRK06647 DNA polymerase III su 99.4 1E-11 2.2E-16 148.6 19.5 193 448-673 9-222 (563)
119 PRK06305 DNA polymerase III su 99.4 9.7E-12 2.1E-16 145.5 18.9 183 448-662 10-214 (451)
120 PRK14955 DNA polymerase III su 99.4 1.1E-11 2.5E-16 142.8 19.1 193 448-673 9-230 (397)
121 PTZ00112 origin recognition co 99.4 1.4E-11 3.1E-16 148.9 19.3 198 448-671 748-978 (1164)
122 PRK14948 DNA polymerase III su 99.4 1.8E-11 3.9E-16 148.0 20.3 183 448-662 9-214 (620)
123 PRK12422 chromosomal replicati 99.4 1.6E-11 3.4E-16 143.5 18.6 190 449-662 105-305 (445)
124 TIGR02639 ClpA ATP-dependent C 99.3 1.8E-11 4E-16 151.1 19.2 194 455-673 454-705 (731)
125 PRK14954 DNA polymerase III su 99.3 3.6E-11 7.8E-16 145.0 21.0 190 448-670 9-227 (620)
126 PRK11034 clpA ATP-dependent Cl 99.3 7.7E-12 1.7E-16 153.8 15.1 163 456-641 459-668 (758)
127 PRK05642 DNA replication initi 99.3 5.5E-11 1.2E-15 127.9 19.5 166 488-681 45-218 (234)
128 PRK14950 DNA polymerase III su 99.3 4.4E-11 9.6E-16 144.3 20.8 195 448-675 9-225 (585)
129 PRK08727 hypothetical protein; 99.3 5.2E-11 1.1E-15 127.9 18.9 175 449-662 13-196 (233)
130 TIGR01650 PD_CobS cobaltochela 99.3 1.5E-11 3.3E-16 137.4 14.0 139 488-640 64-234 (327)
131 PRK14086 dnaA chromosomal repl 99.3 3.2E-11 6.9E-16 144.0 17.5 202 449-676 282-493 (617)
132 PF00308 Bac_DnaA: Bacterial d 99.3 3.1E-11 6.7E-16 128.6 15.7 197 449-675 2-212 (219)
133 cd00009 AAA The AAA+ (ATPases 99.3 3E-11 6.5E-16 115.3 13.0 121 487-624 18-150 (151)
134 PRK14087 dnaA chromosomal repl 99.3 6.8E-11 1.5E-15 138.4 18.5 205 451-680 111-328 (450)
135 CHL00081 chlI Mg-protoporyphyr 99.3 4.1E-11 8.9E-16 135.5 15.7 253 448-742 10-323 (350)
136 TIGR02903 spore_lon_C ATP-depe 99.3 1.3E-10 2.8E-15 140.8 20.4 165 449-642 148-369 (615)
137 COG1474 CDC6 Cdc6-related prot 99.3 1.7E-10 3.6E-15 131.7 19.0 170 451-643 13-207 (366)
138 PRK13407 bchI magnesium chelat 99.2 5.2E-11 1.1E-15 134.3 13.9 163 450-640 3-217 (334)
139 COG2812 DnaX DNA polymerase II 99.2 9.2E-11 2E-15 137.7 15.9 193 448-673 9-222 (515)
140 PRK14971 DNA polymerase III su 99.2 2.3E-10 5E-15 138.5 19.0 191 448-671 10-222 (614)
141 TIGR03345 VI_ClpV1 type VI sec 99.2 3.1E-10 6.8E-15 141.9 18.0 193 455-673 566-824 (852)
142 COG2607 Predicted ATPase (AAA+ 99.2 9.4E-10 2E-14 116.8 18.7 164 449-643 54-243 (287)
143 PRK06620 hypothetical protein; 99.2 5.6E-10 1.2E-14 118.7 15.8 176 449-675 10-193 (214)
144 COG0542 clpA ATP-binding subun 99.2 2.3E-10 4.9E-15 139.1 14.2 163 455-642 491-708 (786)
145 TIGR02030 BchI-ChlI magnesium 99.2 5.3E-10 1.1E-14 126.4 16.2 249 453-743 2-311 (337)
146 PRK07471 DNA polymerase III su 99.1 1E-09 2.2E-14 125.4 17.9 181 449-665 13-233 (365)
147 smart00382 AAA ATPases associa 99.1 2.1E-10 4.5E-15 108.1 10.1 127 488-626 2-147 (148)
148 PHA02244 ATPase-like protein 99.1 9.8E-10 2.1E-14 124.4 17.2 131 489-635 120-269 (383)
149 TIGR03346 chaperone_ClpB ATP-d 99.1 9E-10 2E-14 138.3 18.4 195 455-674 565-820 (852)
150 COG0714 MoxR-like ATPases [Gen 99.1 4.7E-10 1E-14 126.2 14.2 134 489-638 44-202 (329)
151 TIGR00678 holB DNA polymerase 99.1 7.7E-10 1.7E-14 114.4 14.7 150 486-662 12-183 (188)
152 CHL00095 clpC Clp protease ATP 99.1 6E-10 1.3E-14 139.4 16.2 162 455-641 509-734 (821)
153 PF07728 AAA_5: AAA domain (dy 99.1 1E-10 2.2E-15 114.7 7.1 111 490-617 1-139 (139)
154 PRK09112 DNA polymerase III su 99.1 1.2E-09 2.5E-14 124.3 16.7 183 449-665 17-235 (351)
155 PRK09087 hypothetical protein; 99.1 1.6E-09 3.5E-14 116.1 16.6 151 490-677 46-201 (226)
156 KOG0991 Replication factor C, 99.1 2.8E-10 6E-15 120.0 10.4 210 445-695 17-235 (333)
157 COG1219 ClpX ATP-dependent pro 99.1 2.3E-10 5E-15 125.2 9.5 131 457-589 63-203 (408)
158 PRK10865 protein disaggregatio 99.1 8.3E-10 1.8E-14 138.4 15.3 162 454-641 567-781 (857)
159 PRK05564 DNA polymerase III su 99.1 1.9E-09 4E-14 120.6 16.4 170 453-663 2-183 (313)
160 TIGR02442 Cob-chelat-sub cobal 99.1 1.2E-09 2.6E-14 133.0 16.1 156 453-640 2-215 (633)
161 COG0542 clpA ATP-binding subun 99.1 1.3E-09 2.9E-14 132.6 15.4 169 450-641 165-348 (786)
162 KOG1969 DNA replication checkp 99.1 2.4E-09 5.2E-14 127.1 16.7 212 443-684 259-520 (877)
163 TIGR00368 Mg chelatase-related 99.0 2.6E-09 5.7E-14 126.4 15.0 145 452-630 189-395 (499)
164 PF07724 AAA_2: AAA domain (Cd 99.0 6.1E-10 1.3E-14 114.5 8.4 111 489-605 4-131 (171)
165 PRK07399 DNA polymerase III su 99.0 6.1E-09 1.3E-13 116.8 17.0 181 453-669 2-220 (314)
166 COG1224 TIP49 DNA helicase TIP 99.0 9.7E-09 2.1E-13 114.1 18.0 68 451-525 35-104 (450)
167 COG0593 DnaA ATPase involved i 99.0 1E-08 2.2E-13 117.7 18.6 197 448-671 80-286 (408)
168 PRK04132 replication factor C 99.0 5E-09 1.1E-13 129.7 17.1 169 490-690 566-747 (846)
169 smart00350 MCM minichromosome 99.0 5.3E-09 1.2E-13 124.5 16.8 168 455-641 203-402 (509)
170 COG0470 HolB ATPase involved i 99.0 5.1E-09 1.1E-13 115.9 14.6 150 455-636 1-178 (325)
171 TIGR00602 rad24 checkpoint pro 99.0 4.6E-09 9.9E-14 127.0 14.8 213 445-682 74-331 (637)
172 COG1220 HslU ATP-dependent pro 99.0 3.5E-09 7.5E-14 116.8 12.4 83 550-636 252-346 (444)
173 PF06068 TIP49: TIP49 C-termin 99.0 1.4E-08 3E-13 114.5 17.3 67 452-525 21-89 (398)
174 PF01078 Mg_chelatase: Magnesi 99.0 7.1E-10 1.5E-14 116.7 6.6 46 453-512 1-46 (206)
175 PRK05707 DNA polymerase III su 99.0 6.8E-09 1.5E-13 117.2 14.3 150 485-663 19-196 (328)
176 TIGR00764 lon_rel lon-related 99.0 6.4E-09 1.4E-13 126.0 14.9 88 447-548 10-106 (608)
177 PRK11331 5-methylcytosine-spec 98.9 7.3E-09 1.6E-13 120.1 14.1 142 454-625 174-357 (459)
178 PRK13531 regulatory ATPase Rav 98.9 1.3E-08 2.7E-13 119.1 15.3 154 455-638 20-193 (498)
179 PRK08058 DNA polymerase III su 98.9 6.6E-09 1.4E-13 117.3 11.7 155 453-637 3-180 (329)
180 KOG0745 Putative ATP-dependent 98.9 7.5E-09 1.6E-13 117.1 10.2 137 489-628 227-388 (564)
181 smart00763 AAA_PrkA PrkA AAA d 98.9 3.6E-08 7.8E-13 111.7 15.6 83 453-543 48-143 (361)
182 KOG0741 AAA+-type ATPase [Post 98.9 1.4E-08 3E-13 117.1 12.1 143 488-637 538-684 (744)
183 PRK08116 hypothetical protein; 98.9 3.9E-08 8.4E-13 108.1 15.3 166 451-639 81-260 (268)
184 COG3829 RocR Transcriptional r 98.8 1.5E-08 3.2E-13 118.3 11.5 157 450-633 240-424 (560)
185 TIGR03015 pepcterm_ATPase puta 98.8 1.6E-07 3.4E-12 101.9 17.5 175 490-681 45-248 (269)
186 PF00158 Sigma54_activat: Sigm 98.8 2.4E-08 5.2E-13 102.5 9.3 120 457-603 1-143 (168)
187 COG1221 PspF Transcriptional r 98.8 2.6E-08 5.6E-13 114.2 10.4 162 450-640 73-265 (403)
188 PF07726 AAA_3: ATPase family 98.8 3.1E-09 6.8E-14 104.0 2.5 112 490-617 1-129 (131)
189 TIGR02031 BchD-ChlD magnesium 98.7 1.4E-07 3.1E-12 114.2 16.4 133 489-640 17-175 (589)
190 COG1239 ChlI Mg-chelatase subu 98.7 2.8E-07 6E-12 105.3 17.0 162 451-640 13-233 (423)
191 TIGR02974 phageshock_pspF psp 98.7 7.5E-08 1.6E-12 108.8 12.4 134 487-640 21-188 (329)
192 PRK06964 DNA polymerase III su 98.7 7.9E-08 1.7E-12 109.0 12.3 135 485-638 18-203 (342)
193 PRK11608 pspF phage shock prot 98.7 8.9E-08 1.9E-12 108.0 12.6 96 453-561 4-113 (326)
194 PRK11388 DNA-binding transcrip 98.7 6E-08 1.3E-12 118.5 12.1 98 451-561 321-429 (638)
195 KOG0990 Replication factor C, 98.7 3.9E-08 8.5E-13 108.3 9.0 197 445-682 31-240 (360)
196 PF13177 DNA_pol3_delta2: DNA 98.7 1E-07 2.2E-12 97.2 11.3 134 459-626 1-161 (162)
197 TIGR01817 nifA Nif-specific re 98.7 6.9E-08 1.5E-12 115.6 11.1 100 449-561 190-303 (534)
198 PRK09862 putative ATP-dependen 98.7 2.5E-07 5.4E-12 109.7 14.7 144 453-629 189-391 (506)
199 PRK15424 propionate catabolism 98.7 4.2E-08 9.1E-13 117.1 8.3 97 452-561 216-335 (538)
200 PRK15429 formate hydrogenlyase 98.7 2.3E-07 5E-12 114.4 15.1 157 450-633 371-554 (686)
201 TIGR02329 propionate_PrpR prop 98.6 1.2E-07 2.5E-12 113.3 11.8 97 452-561 209-320 (526)
202 COG2204 AtoC Response regulato 98.6 9.5E-08 2.1E-12 111.4 10.5 155 451-633 137-319 (464)
203 PRK12377 putative replication 98.6 4.3E-07 9.3E-12 98.9 14.4 103 449-560 68-175 (248)
204 PRK08769 DNA polymerase III su 98.6 4.5E-07 9.8E-12 102.0 14.9 155 485-666 23-204 (319)
205 PRK07952 DNA replication prote 98.6 5.6E-07 1.2E-11 97.8 15.1 102 449-560 66-174 (244)
206 KOG2035 Replication factor C, 98.6 8.9E-07 1.9E-11 96.1 16.3 177 448-662 6-220 (351)
207 PRK07993 DNA polymerase III su 98.6 3.2E-07 7E-12 103.9 13.6 134 485-637 21-178 (334)
208 PRK05022 anaerobic nitric oxid 98.6 2.8E-07 6.2E-12 109.9 13.0 96 453-561 185-294 (509)
209 PRK06871 DNA polymerase III su 98.6 5.4E-07 1.2E-11 101.6 14.4 136 485-639 21-179 (325)
210 PF01637 Arch_ATPase: Archaeal 98.6 4.9E-07 1.1E-11 94.4 12.9 162 488-663 20-227 (234)
211 COG3604 FhlA Transcriptional r 98.6 2.4E-07 5.1E-12 107.2 11.2 157 449-632 217-400 (550)
212 PF03215 Rad17: Rad17 cell cyc 98.6 9.6E-07 2.1E-11 105.3 15.8 214 444-680 8-269 (519)
213 KOG1942 DNA helicase, TBP-inte 98.5 2.1E-06 4.5E-11 93.6 16.3 69 450-525 33-103 (456)
214 PRK08939 primosomal protein Dn 98.5 3.6E-07 7.8E-12 102.4 10.9 103 451-560 123-229 (306)
215 PRK10820 DNA-binding transcrip 98.5 4.3E-07 9.3E-12 108.6 11.7 99 450-561 199-311 (520)
216 PF05621 TniB: Bacterial TniB 98.5 2.7E-06 5.9E-11 94.4 16.8 209 455-682 34-272 (302)
217 PRK08181 transposase; Validate 98.5 3.7E-07 7.9E-12 100.5 9.8 72 488-561 106-180 (269)
218 PRK06526 transposase; Provisio 98.5 1.7E-07 3.6E-12 102.4 6.5 72 487-560 97-171 (254)
219 PRK06090 DNA polymerase III su 98.5 8.5E-07 1.9E-11 99.8 12.2 130 485-637 22-178 (319)
220 PF14532 Sigma54_activ_2: Sigm 98.5 2.9E-07 6.4E-12 90.8 7.0 59 488-561 21-82 (138)
221 PRK08699 DNA polymerase III su 98.5 6.8E-07 1.5E-11 101.0 10.8 133 486-637 19-183 (325)
222 PF01695 IstB_IS21: IstB-like 98.5 2.1E-07 4.6E-12 96.4 6.1 71 487-559 46-119 (178)
223 COG0606 Predicted ATPase with 98.4 9.4E-08 2E-12 110.4 3.5 47 452-512 176-222 (490)
224 PF13173 AAA_14: AAA domain 98.4 1.4E-06 3E-11 84.9 10.5 118 489-630 3-126 (128)
225 PRK09183 transposase/IS protei 98.4 6.6E-07 1.4E-11 98.0 8.4 73 487-560 101-176 (259)
226 KOG2227 Pre-initiation complex 98.4 6.6E-06 1.4E-10 94.8 16.3 195 454-671 149-368 (529)
227 PRK06835 DNA replication prote 98.3 1.3E-06 2.9E-11 98.7 9.6 69 489-560 184-258 (329)
228 COG1484 DnaC DNA replication p 98.3 5.5E-06 1.2E-10 90.6 13.8 73 487-560 104-179 (254)
229 PTZ00111 DNA replication licen 98.3 1.6E-06 3.5E-11 107.7 9.7 165 455-640 450-658 (915)
230 KOG1514 Origin recognition com 98.3 6.3E-06 1.4E-10 98.7 13.8 173 490-680 424-629 (767)
231 PF05729 NACHT: NACHT domain 98.3 5.9E-06 1.3E-10 81.9 11.3 143 490-641 2-165 (166)
232 PRK06921 hypothetical protein; 98.3 2.6E-06 5.7E-11 93.7 9.2 68 488-559 117-188 (266)
233 PF13401 AAA_22: AAA domain; P 98.3 4E-06 8.7E-11 80.7 9.4 99 488-601 4-125 (131)
234 KOG1051 Chaperone HSP104 and r 98.2 5.2E-06 1.1E-10 103.0 12.0 127 455-604 562-711 (898)
235 TIGR02915 PEP_resp_reg putativ 98.2 3.9E-06 8.4E-11 98.0 10.5 96 453-561 137-246 (445)
236 PRK13765 ATP-dependent proteas 98.2 7E-06 1.5E-10 100.0 11.9 54 446-513 22-75 (637)
237 PF12775 AAA_7: P-loop contain 98.2 3.6E-06 7.8E-11 92.9 8.3 139 488-642 33-196 (272)
238 PRK13406 bchD magnesium chelat 98.2 1.2E-05 2.7E-10 97.2 12.9 200 489-743 26-252 (584)
239 PRK10923 glnG nitrogen regulat 98.2 1.1E-05 2.4E-10 95.0 12.1 96 453-561 136-245 (469)
240 KOG2680 DNA helicase TIP49, TB 98.1 3.9E-05 8.4E-10 84.2 14.2 70 449-525 34-105 (454)
241 PF12774 AAA_6: Hydrolytic ATP 98.1 1.7E-05 3.6E-10 85.7 11.2 131 488-636 32-177 (231)
242 PLN03210 Resistant to P. syrin 98.1 3.3E-05 7.1E-10 100.8 16.0 159 450-641 179-366 (1153)
243 PRK11361 acetoacetate metaboli 98.1 2.6E-05 5.6E-10 91.3 13.3 96 453-561 141-250 (457)
244 TIGR01818 ntrC nitrogen regula 98.1 1.9E-05 4E-10 92.7 11.3 159 454-641 133-324 (463)
245 PF00931 NB-ARC: NB-ARC domain 98.0 9.5E-05 2.1E-09 80.8 15.5 164 486-672 17-203 (287)
246 cd01120 RecA-like_NTPases RecA 98.0 1.5E-05 3.2E-10 78.4 8.3 72 491-562 2-99 (165)
247 TIGR02237 recomb_radB DNA repa 98.0 1.3E-05 2.8E-10 84.1 8.1 116 484-602 8-148 (209)
248 PRK05917 DNA polymerase III su 98.0 3.7E-05 8E-10 85.5 11.3 123 485-626 16-154 (290)
249 KOG1970 Checkpoint RAD17-RFC c 98.0 9.6E-05 2.1E-09 86.8 15.0 214 445-679 72-320 (634)
250 PRK15115 response regulator Gl 98.0 3.7E-05 8E-10 89.8 11.2 133 489-641 158-324 (444)
251 PF03969 AFG1_ATPase: AFG1-lik 98.0 2.1E-05 4.7E-10 90.1 8.9 106 485-607 59-172 (362)
252 PF00493 MCM: MCM2/3/5 family 97.9 2.6E-06 5.7E-11 96.5 -0.5 161 455-641 24-223 (331)
253 PRK10365 transcriptional regul 97.9 6.8E-05 1.5E-09 87.3 11.1 71 488-561 162-246 (441)
254 PRK05818 DNA polymerase III su 97.8 8.6E-05 1.9E-09 81.3 9.5 122 486-626 5-147 (261)
255 PRK07276 DNA polymerase III su 97.7 0.0002 4.4E-09 79.9 12.0 129 486-636 22-172 (290)
256 PRK07132 DNA polymerase III su 97.7 0.0002 4.4E-09 80.2 11.6 127 486-637 16-160 (299)
257 PHA00729 NTP-binding motif con 97.7 0.00013 2.8E-09 78.5 9.6 25 489-513 18-42 (226)
258 PF00910 RNA_helicase: RNA hel 97.7 0.00011 2.3E-09 69.9 7.3 23 491-513 1-23 (107)
259 PF05707 Zot: Zonular occluden 97.6 0.00014 3E-09 76.1 8.2 124 491-626 3-146 (193)
260 PRK09361 radB DNA repair and r 97.6 0.00014 3E-09 77.4 8.1 39 484-522 19-60 (225)
261 CHL00195 ycf46 Ycf46; Provisio 97.6 0.0022 4.9E-08 76.5 17.8 181 549-758 82-269 (489)
262 TIGR02012 tigrfam_recA protein 97.6 0.00029 6.2E-09 79.7 9.8 118 484-601 51-189 (321)
263 COG3283 TyrR Transcriptional r 97.5 0.00012 2.7E-09 82.1 6.4 156 450-632 199-376 (511)
264 KOG1968 Replication factor C, 97.5 0.00017 3.8E-09 90.4 8.5 212 444-678 309-535 (871)
265 cd01124 KaiC KaiC is a circadi 97.5 0.00043 9.2E-09 70.9 9.5 31 491-521 2-35 (187)
266 KOG0478 DNA replication licens 97.5 0.0003 6.5E-09 84.4 9.3 132 486-637 460-624 (804)
267 KOG2543 Origin recognition com 97.5 0.0014 3E-08 74.7 14.0 162 455-639 6-193 (438)
268 COG5271 MDN1 AAA ATPase contai 97.5 0.00028 6E-09 90.0 8.9 134 488-639 1543-1703(4600)
269 PF13207 AAA_17: AAA domain; P 97.5 7.2E-05 1.6E-09 71.3 3.1 31 491-521 2-32 (121)
270 KOG2383 Predicted ATPase [Gene 97.5 0.00045 9.8E-09 78.8 9.8 159 485-673 111-294 (467)
271 KOG1051 Chaperone HSP104 and r 97.5 0.0008 1.7E-08 84.2 12.8 163 454-641 185-365 (898)
272 COG1373 Predicted ATPase (AAA+ 97.5 0.0011 2.3E-08 77.3 13.0 124 490-634 39-162 (398)
273 COG3267 ExeA Type II secretory 97.4 0.003 6.6E-08 68.8 15.2 175 491-679 54-253 (269)
274 KOG2228 Origin recognition com 97.4 0.001 2.2E-08 74.7 11.8 163 455-640 24-220 (408)
275 PRK00131 aroK shikimate kinase 97.4 0.00014 3E-09 73.2 4.4 35 486-520 2-36 (175)
276 PRK11823 DNA repair protein Ra 97.4 0.00072 1.6E-08 79.9 10.9 79 484-562 76-170 (446)
277 TIGR02858 spore_III_AA stage I 97.4 0.00049 1.1E-08 76.1 8.9 113 489-624 112-256 (270)
278 PRK08118 topology modulation p 97.4 0.0003 6.5E-09 72.2 6.7 33 490-522 3-35 (167)
279 TIGR01618 phage_P_loop phage n 97.4 0.00028 6.1E-09 75.8 6.7 74 487-562 11-95 (220)
280 cd01121 Sms Sms (bacterial rad 97.4 0.00081 1.8E-08 77.6 10.4 79 484-562 78-172 (372)
281 PRK14722 flhF flagellar biosyn 97.4 0.001 2.2E-08 76.7 11.1 112 486-612 135-267 (374)
282 cd00983 recA RecA is a bacter 97.4 0.00069 1.5E-08 76.7 9.5 117 484-600 51-188 (325)
283 COG1485 Predicted ATPase [Gene 97.4 0.00061 1.3E-08 77.0 9.0 106 485-607 62-175 (367)
284 COG1618 Predicted nucleotide k 97.3 0.0022 4.7E-08 65.6 11.9 26 487-512 4-29 (179)
285 cd01394 radB RadB. The archaea 97.3 0.00057 1.2E-08 72.3 8.2 39 484-522 15-56 (218)
286 PHA02624 large T antigen; Prov 97.3 6.1E-05 1.3E-09 90.3 0.9 123 484-625 427-561 (647)
287 PRK08533 flagellar accessory p 97.3 0.00089 1.9E-08 72.3 9.6 78 484-561 20-130 (230)
288 PRK13949 shikimate kinase; Pro 97.3 0.00082 1.8E-08 69.1 8.8 31 490-520 3-33 (169)
289 PRK06067 flagellar accessory p 97.3 0.00089 1.9E-08 71.9 9.5 39 484-522 21-62 (234)
290 COG1241 MCM2 Predicted ATPase 97.3 0.00024 5.2E-09 86.8 5.6 167 454-642 285-486 (682)
291 PRK12723 flagellar biosynthesi 97.3 0.0065 1.4E-07 70.6 16.6 169 486-668 172-375 (388)
292 TIGR01359 UMP_CMP_kin_fam UMP- 97.3 0.0019 4E-08 66.3 10.7 33 491-525 2-34 (183)
293 PF14516 AAA_35: AAA-like doma 97.3 0.0062 1.3E-07 69.3 15.8 170 488-676 31-244 (331)
294 PF13671 AAA_33: AAA domain; P 97.2 0.0007 1.5E-08 66.2 6.7 33 491-525 2-34 (143)
295 PRK09376 rho transcription ter 97.2 0.0011 2.5E-08 76.4 9.1 74 490-563 171-271 (416)
296 cd01393 recA_like RecA is a b 97.2 0.001 2.2E-08 70.6 8.2 117 484-601 15-166 (226)
297 cd03283 ABC_MutS-like MutS-lik 97.2 0.0016 3.4E-08 68.9 9.3 106 488-607 25-151 (199)
298 PRK07261 topology modulation p 97.2 0.0007 1.5E-08 69.7 6.4 32 491-522 3-34 (171)
299 PF05272 VirE: Virulence-assoc 97.2 0.0023 4.9E-08 67.8 10.3 111 484-625 48-169 (198)
300 PF07693 KAP_NTPase: KAP famil 97.2 0.01 2.3E-07 66.2 16.2 29 486-514 18-46 (325)
301 PRK14974 cell division protein 97.1 0.0038 8.3E-08 71.2 12.6 35 487-521 139-176 (336)
302 cd01128 rho_factor Transcripti 97.1 0.0014 3E-08 71.8 8.6 27 488-514 16-42 (249)
303 PF03266 NTPase_1: NTPase; In 97.1 0.00035 7.5E-09 72.0 3.7 23 490-512 1-23 (168)
304 PF01745 IPT: Isopentenyl tran 97.1 0.0021 4.5E-08 68.5 9.5 134 491-641 4-141 (233)
305 PTZ00202 tuzin; Provisional 97.1 0.037 7.9E-07 65.0 20.1 63 451-522 258-320 (550)
306 KOG2170 ATPase of the AAA+ sup 97.1 0.0065 1.4E-07 67.6 13.0 96 456-560 83-190 (344)
307 PRK13947 shikimate kinase; Pro 97.1 0.00052 1.1E-08 69.6 4.1 31 490-520 3-33 (171)
308 PRK15455 PrkA family serine pr 97.1 0.0012 2.7E-08 79.1 7.8 64 452-521 73-137 (644)
309 cd01123 Rad51_DMC1_radA Rad51_ 97.0 0.0017 3.7E-08 69.2 7.9 117 484-601 15-167 (235)
310 PF13191 AAA_16: AAA ATPase do 97.0 0.00053 1.1E-08 69.6 3.7 59 457-524 2-63 (185)
311 cd00464 SK Shikimate kinase (S 97.0 0.00059 1.3E-08 67.6 3.9 31 490-520 1-31 (154)
312 COG1116 TauB ABC-type nitrate/ 97.0 0.0024 5.2E-08 69.4 8.7 25 488-512 29-53 (248)
313 PRK03839 putative kinase; Prov 97.0 0.00056 1.2E-08 70.3 3.7 30 491-520 3-32 (180)
314 PRK06762 hypothetical protein; 97.0 0.0022 4.9E-08 64.8 7.9 38 488-525 2-39 (166)
315 PRK13695 putative NTPase; Prov 97.0 0.0092 2E-07 61.1 12.5 22 491-512 3-24 (174)
316 PRK00771 signal recognition pa 97.0 0.0073 1.6E-07 71.2 13.1 37 486-522 93-132 (437)
317 PF00448 SRP54: SRP54-type pro 97.0 0.0044 9.6E-08 65.4 10.3 112 488-611 1-134 (196)
318 PRK09354 recA recombinase A; P 97.0 0.0031 6.7E-08 72.1 9.7 79 484-562 56-152 (349)
319 cd01131 PilT Pilus retraction 97.0 0.00099 2.2E-08 70.1 5.4 68 490-557 3-83 (198)
320 PRK11889 flhF flagellar biosyn 96.9 0.0099 2.1E-07 69.0 13.6 131 461-607 217-367 (436)
321 KOG0482 DNA replication licens 96.9 0.0038 8.2E-08 73.0 10.1 202 455-671 342-581 (721)
322 PRK00625 shikimate kinase; Pro 96.9 0.00075 1.6E-08 69.9 3.9 31 490-520 2-32 (173)
323 TIGR03877 thermo_KaiC_1 KaiC d 96.9 0.0047 1E-07 66.8 10.2 39 484-522 17-58 (237)
324 KOG0480 DNA replication licens 96.9 0.0045 9.9E-08 74.1 10.8 167 454-642 344-545 (764)
325 PF06745 KaiC: KaiC; InterPro 96.9 0.0025 5.5E-08 67.9 7.9 38 484-521 15-56 (226)
326 TIGR00416 sms DNA repair prote 96.9 0.0037 8E-08 74.1 9.9 79 484-562 90-184 (454)
327 PF06309 Torsin: Torsin; Inte 96.9 0.0039 8.5E-08 61.5 8.4 52 455-512 25-77 (127)
328 TIGR01420 pilT_fam pilus retra 96.9 0.0015 3.4E-08 74.5 6.3 71 488-558 122-205 (343)
329 COG5245 DYN1 Dynein, heavy cha 96.9 0.011 2.4E-07 75.8 13.9 183 484-682 1490-1719(3164)
330 PRK14532 adenylate kinase; Pro 96.9 0.00087 1.9E-08 69.3 3.9 34 490-525 2-35 (188)
331 PRK04841 transcriptional regul 96.9 0.018 3.9E-07 73.2 16.4 152 489-664 33-219 (903)
332 PRK04296 thymidine kinase; Pro 96.8 0.0041 8.9E-08 65.1 8.6 70 490-560 4-90 (190)
333 COG0563 Adk Adenylate kinase a 96.8 0.006 1.3E-07 63.6 9.7 34 490-525 2-35 (178)
334 COG4650 RtcR Sigma54-dependent 96.8 0.00088 1.9E-08 73.6 3.6 76 486-561 206-295 (531)
335 PF13604 AAA_30: AAA domain; P 96.8 0.0025 5.4E-08 67.1 7.0 100 489-604 19-133 (196)
336 PRK13946 shikimate kinase; Pro 96.8 0.0022 4.7E-08 66.6 6.3 35 487-521 9-43 (184)
337 COG0703 AroK Shikimate kinase 96.8 0.0011 2.5E-08 68.5 4.1 33 489-521 3-35 (172)
338 PRK12724 flagellar biosynthesi 96.8 0.021 4.6E-07 66.8 14.8 115 486-612 221-354 (432)
339 PRK14531 adenylate kinase; Pro 96.8 0.0012 2.7E-08 68.3 4.3 35 489-525 3-37 (183)
340 KOG3347 Predicted nucleotide k 96.8 0.001 2.2E-08 67.1 3.3 34 490-525 9-42 (176)
341 cd02020 CMPK Cytidine monophos 96.8 0.0011 2.4E-08 64.9 3.7 30 491-520 2-31 (147)
342 PRK05800 cobU adenosylcobinami 96.8 0.0042 9E-08 64.2 8.0 34 490-523 3-36 (170)
343 cd03115 SRP The signal recogni 96.8 0.01 2.2E-07 60.6 10.7 33 491-523 3-38 (173)
344 PRK06217 hypothetical protein; 96.8 0.0012 2.6E-08 68.3 4.0 31 490-520 3-33 (183)
345 TIGR02688 conserved hypothetic 96.8 0.0024 5.3E-08 74.3 6.8 60 488-560 209-272 (449)
346 PF04665 Pox_A32: Poxvirus A32 96.7 0.011 2.3E-07 64.6 11.3 134 486-639 11-170 (241)
347 cd00046 DEXDc DEAD-like helica 96.7 0.0062 1.3E-07 57.3 8.4 25 489-513 1-25 (144)
348 PRK13948 shikimate kinase; Pro 96.7 0.0016 3.4E-08 68.2 4.6 35 486-520 8-42 (182)
349 cd03281 ABC_MSH5_euk MutS5 hom 96.7 0.0086 1.9E-07 64.0 10.3 23 488-510 29-51 (213)
350 COG3284 AcoR Transcriptional a 96.7 0.0026 5.7E-08 76.4 7.0 166 490-676 338-537 (606)
351 cd03216 ABC_Carb_Monos_I This 96.7 0.0042 9.1E-08 63.2 7.6 110 485-608 23-146 (163)
352 PF00437 T2SE: Type II/IV secr 96.7 0.0017 3.6E-08 71.2 4.9 100 449-558 98-207 (270)
353 cd00984 DnaB_C DnaB helicase C 96.7 0.0056 1.2E-07 65.6 8.8 38 484-521 9-50 (242)
354 cd00227 CPT Chloramphenicol (C 96.7 0.0014 2.9E-08 67.4 3.8 37 489-525 3-39 (175)
355 cd01428 ADK Adenylate kinase ( 96.7 0.0013 2.9E-08 67.7 3.8 33 491-525 2-34 (194)
356 PTZ00088 adenylate kinase 1; P 96.7 0.0017 3.6E-08 70.3 4.7 35 486-520 4-38 (229)
357 cd02021 GntK Gluconate kinase 96.7 0.0013 2.8E-08 65.4 3.6 32 491-524 2-33 (150)
358 PRK05973 replicative DNA helic 96.6 0.0051 1.1E-07 66.9 8.0 39 484-522 60-101 (237)
359 PRK04301 radA DNA repair and r 96.6 0.0045 9.8E-08 69.8 7.9 40 484-523 98-146 (317)
360 cd01122 GP4d_helicase GP4d_hel 96.6 0.0047 1E-07 67.5 7.8 38 484-521 26-67 (271)
361 PF10236 DAP3: Mitochondrial r 96.6 0.065 1.4E-06 60.6 17.0 105 537-642 142-280 (309)
362 COG0324 MiaA tRNA delta(2)-iso 96.6 0.019 4.1E-07 64.7 12.5 122 488-634 3-126 (308)
363 PRK10416 signal recognition pa 96.6 0.026 5.6E-07 64.1 13.8 61 460-521 85-150 (318)
364 PLN02674 adenylate kinase 96.6 0.0072 1.6E-07 66.1 8.9 38 486-525 29-66 (244)
365 TIGR01313 therm_gnt_kin carboh 96.6 0.0015 3.3E-08 65.8 3.5 32 491-524 1-32 (163)
366 TIGR03574 selen_PSTK L-seryl-t 96.6 0.0038 8.2E-08 67.8 6.5 34 491-524 2-38 (249)
367 cd01129 PulE-GspE PulE/GspE Th 96.6 0.005 1.1E-07 68.0 7.5 94 452-558 57-159 (264)
368 PRK00091 miaA tRNA delta(2)-is 96.6 0.015 3.3E-07 65.6 11.3 38 488-525 4-41 (307)
369 COG4619 ABC-type uncharacteriz 96.6 0.0072 1.6E-07 62.4 7.8 27 485-511 26-52 (223)
370 TIGR02236 recomb_radA DNA repa 96.6 0.0059 1.3E-07 68.5 8.1 40 484-523 91-139 (310)
371 PLN02200 adenylate kinase fami 96.6 0.0023 4.9E-08 69.4 4.5 39 485-525 40-78 (234)
372 PRK03731 aroL shikimate kinase 96.5 0.0022 4.8E-08 65.2 4.2 32 489-520 3-34 (171)
373 PRK14530 adenylate kinase; Pro 96.5 0.002 4.4E-08 68.3 4.0 30 490-519 5-34 (215)
374 COG3854 SpoIIIAA ncharacterize 96.5 0.0054 1.2E-07 66.0 7.1 70 489-558 138-228 (308)
375 PRK04040 adenylate kinase; Pro 96.5 0.0073 1.6E-07 63.4 8.1 35 488-524 2-38 (188)
376 cd00267 ABC_ATPase ABC (ATP-bi 96.5 0.0081 1.8E-07 60.4 8.2 110 486-609 23-145 (157)
377 PRK14730 coaE dephospho-CoA ki 96.5 0.0062 1.3E-07 64.2 7.6 33 491-525 4-36 (195)
378 cd03221 ABCF_EF-3 ABCF_EF-3 E 96.5 0.011 2.3E-07 59.2 8.9 72 485-558 23-98 (144)
379 PRK06547 hypothetical protein; 96.5 0.0024 5.3E-08 66.1 4.4 35 486-520 13-47 (172)
380 PF00406 ADK: Adenylate kinase 96.5 0.013 2.7E-07 58.7 9.5 31 493-525 1-31 (151)
381 PRK10536 hypothetical protein; 96.5 0.009 1.9E-07 65.7 8.9 22 490-511 76-97 (262)
382 PRK09519 recA DNA recombinatio 96.5 0.0092 2E-07 74.5 10.0 117 484-600 56-193 (790)
383 COG1102 Cmk Cytidylate kinase 96.5 0.0021 4.5E-08 65.7 3.6 28 491-518 3-30 (179)
384 PRK05057 aroK shikimate kinase 96.5 0.0025 5.5E-08 65.6 4.3 34 488-521 4-37 (172)
385 TIGR00064 ftsY signal recognit 96.5 0.033 7.2E-07 61.8 13.3 37 486-522 70-109 (272)
386 TIGR03878 thermo_KaiC_2 KaiC d 96.5 0.012 2.6E-07 64.7 9.6 39 484-522 32-73 (259)
387 cd02027 APSK Adenosine 5'-phos 96.5 0.0074 1.6E-07 60.7 7.3 34 491-524 2-38 (149)
388 PF12780 AAA_8: P-loop contain 96.5 0.015 3.1E-07 64.6 10.1 91 455-558 8-99 (268)
389 PRK06696 uridine kinase; Valid 96.5 0.0055 1.2E-07 65.6 6.7 40 486-525 20-62 (223)
390 PRK13764 ATPase; Provisional 96.4 0.0044 9.6E-08 75.4 6.5 70 488-558 257-334 (602)
391 cd03222 ABC_RNaseL_inhibitor T 96.4 0.008 1.7E-07 62.5 7.6 72 486-558 23-99 (177)
392 PLN02840 tRNA dimethylallyltra 96.4 0.02 4.3E-07 67.1 11.4 37 489-525 22-58 (421)
393 PRK10867 signal recognition pa 96.4 0.03 6.6E-07 66.0 13.0 37 486-522 98-138 (433)
394 PRK14528 adenylate kinase; Pro 96.4 0.0029 6.2E-08 66.0 4.1 30 490-519 3-32 (186)
395 cd03243 ABC_MutS_homologs The 96.4 0.016 3.4E-07 61.0 9.7 22 489-510 30-51 (202)
396 PRK13900 type IV secretion sys 96.4 0.0044 9.6E-08 70.6 5.9 73 486-558 158-245 (332)
397 cd01130 VirB11-like_ATPase Typ 96.4 0.0069 1.5E-07 63.0 6.9 72 486-557 23-109 (186)
398 TIGR02788 VirB11 P-type DNA tr 96.4 0.018 3.9E-07 64.8 10.7 75 484-558 140-228 (308)
399 PRK14527 adenylate kinase; Pro 96.4 0.0026 5.7E-08 66.2 3.7 33 486-518 4-36 (191)
400 TIGR02238 recomb_DMC1 meiotic 96.4 0.009 1.9E-07 67.6 8.2 116 484-600 92-242 (313)
401 TIGR01360 aden_kin_iso1 adenyl 96.4 0.0029 6.2E-08 64.8 3.9 34 490-525 5-38 (188)
402 PRK02496 adk adenylate kinase; 96.4 0.0027 5.9E-08 65.5 3.7 30 490-519 3-32 (184)
403 TIGR02525 plasmid_TraJ plasmid 96.3 0.01 2.3E-07 68.6 8.6 69 490-558 151-235 (372)
404 TIGR00152 dephospho-CoA kinase 96.3 0.0053 1.1E-07 63.8 5.6 33 491-525 2-34 (188)
405 cd03227 ABC_Class2 ABC-type Cl 96.3 0.016 3.4E-07 59.1 8.9 24 488-511 21-44 (162)
406 PRK05703 flhF flagellar biosyn 96.3 0.032 6.8E-07 65.8 12.6 110 488-611 221-351 (424)
407 smart00534 MUTSac ATPase domai 96.3 0.017 3.7E-07 60.1 9.3 20 491-510 2-21 (185)
408 PF13521 AAA_28: AAA domain; P 96.3 0.0047 1E-07 62.4 5.0 34 491-525 2-35 (163)
409 TIGR02782 TrbB_P P-type conjug 96.3 0.0061 1.3E-07 68.5 6.3 71 488-558 132-214 (299)
410 COG2805 PilT Tfp pilus assembl 96.3 0.0076 1.6E-07 67.1 6.7 71 488-558 124-208 (353)
411 TIGR01351 adk adenylate kinase 96.3 0.0032 6.8E-08 66.7 3.7 33 491-525 2-34 (210)
412 smart00487 DEXDc DEAD-like hel 96.3 0.019 4E-07 57.5 9.1 33 489-521 25-62 (201)
413 PTZ00035 Rad51 protein; Provis 96.3 0.012 2.5E-07 67.3 8.5 118 484-603 114-266 (337)
414 cd03238 ABC_UvrA The excision 96.3 0.019 4.1E-07 59.7 9.2 26 486-511 19-44 (176)
415 PF06414 Zeta_toxin: Zeta toxi 96.3 0.011 2.4E-07 62.1 7.4 40 486-525 13-53 (199)
416 PLN03187 meiotic recombination 96.2 0.013 2.8E-07 67.2 8.5 116 484-600 122-272 (344)
417 COG5271 MDN1 AAA ATPase contai 96.2 0.012 2.6E-07 76.1 8.6 137 489-640 889-1048(4600)
418 PRK04328 hypothetical protein; 96.2 0.024 5.1E-07 62.0 10.2 38 484-521 19-59 (249)
419 PRK00279 adk adenylate kinase; 96.2 0.0038 8.3E-08 66.3 4.0 33 491-525 3-35 (215)
420 COG4088 Predicted nucleotide k 96.2 0.014 3E-07 62.1 7.9 23 491-513 4-26 (261)
421 cd03228 ABCC_MRP_Like The MRP 96.2 0.022 4.8E-07 58.3 9.3 28 485-512 25-52 (171)
422 PRK08154 anaerobic benzoate ca 96.2 0.0078 1.7E-07 67.8 6.3 36 485-520 130-165 (309)
423 PRK01184 hypothetical protein; 96.2 0.0041 8.8E-08 64.1 3.7 33 490-525 3-35 (184)
424 PRK13851 type IV secretion sys 96.2 0.0057 1.2E-07 70.0 5.2 75 484-558 158-246 (344)
425 PRK12726 flagellar biosynthesi 96.2 0.04 8.6E-07 63.9 11.8 59 460-521 180-242 (407)
426 cd03282 ABC_MSH4_euk MutS4 hom 96.2 0.027 5.9E-07 59.8 9.9 23 488-510 29-51 (204)
427 TIGR00767 rho transcription te 96.2 0.013 2.9E-07 68.1 8.0 26 488-513 168-193 (415)
428 PRK14529 adenylate kinase; Pro 96.2 0.02 4.3E-07 61.9 8.9 34 490-525 2-35 (223)
429 cd03230 ABC_DR_subfamily_A Thi 96.2 0.02 4.3E-07 58.7 8.6 27 486-512 24-50 (173)
430 cd03247 ABCC_cytochrome_bd The 96.2 0.03 6.4E-07 57.6 9.9 28 485-512 25-52 (178)
431 TIGR02533 type_II_gspE general 96.2 0.012 2.5E-07 70.5 7.9 94 451-558 218-321 (486)
432 TIGR00174 miaA tRNA isopenteny 96.1 0.029 6.4E-07 62.7 10.5 37 491-527 2-38 (287)
433 TIGR03880 KaiC_arch_3 KaiC dom 96.1 0.023 5E-07 60.5 9.3 39 484-522 12-53 (224)
434 TIGR03499 FlhF flagellar biosy 96.1 0.016 3.5E-07 64.5 8.4 37 487-523 193-234 (282)
435 COG1936 Predicted nucleotide k 96.1 0.0038 8.2E-08 64.5 3.1 32 491-525 3-34 (180)
436 PF13481 AAA_25: AAA domain; P 96.1 0.011 2.3E-07 61.1 6.5 75 489-563 33-156 (193)
437 cd03214 ABC_Iron-Siderophores_ 96.1 0.018 4E-07 59.4 8.1 28 485-512 22-49 (180)
438 PHA02774 E1; Provisional 96.1 0.013 2.8E-07 70.7 7.9 38 484-521 430-468 (613)
439 PF13238 AAA_18: AAA domain; P 96.1 0.0033 7.2E-08 59.8 2.4 22 491-512 1-22 (129)
440 TIGR01526 nadR_NMN_Atrans nico 96.1 0.01 2.3E-07 67.4 6.7 67 489-556 163-240 (325)
441 PRK06581 DNA polymerase III su 96.1 0.12 2.5E-06 56.7 14.2 135 489-642 16-164 (263)
442 TIGR02655 circ_KaiC circadian 96.1 0.015 3.4E-07 69.4 8.4 78 484-561 259-366 (484)
443 PRK04182 cytidylate kinase; Pr 96.1 0.0051 1.1E-07 62.4 3.8 28 491-518 3-30 (180)
444 TIGR02239 recomb_RAD51 DNA rep 96.1 0.012 2.5E-07 66.8 6.9 116 484-600 92-242 (316)
445 PRK13833 conjugal transfer pro 96.1 0.0081 1.8E-07 68.2 5.7 71 487-557 143-224 (323)
446 cd03246 ABCC_Protease_Secretio 96.0 0.021 4.5E-07 58.6 8.1 27 486-512 26-52 (173)
447 cd03280 ABC_MutS2 MutS2 homolo 96.0 0.034 7.3E-07 58.5 9.8 21 489-509 29-49 (200)
448 cd00544 CobU Adenosylcobinamid 96.0 0.022 4.8E-07 58.9 8.3 71 491-563 2-88 (169)
449 TIGR01425 SRP54_euk signal rec 96.0 0.057 1.2E-06 63.6 12.6 37 486-522 98-137 (429)
450 TIGR03881 KaiC_arch_4 KaiC dom 96.0 0.027 5.9E-07 60.0 9.0 40 484-523 16-58 (229)
451 PF13245 AAA_19: Part of AAA d 96.0 0.0088 1.9E-07 53.8 4.4 31 491-521 13-50 (76)
452 COG2804 PulE Type II secretory 96.0 0.013 2.9E-07 69.3 7.0 95 450-558 233-337 (500)
453 KOG0481 DNA replication licens 96.0 0.0085 1.8E-07 70.3 5.3 170 456-638 332-526 (729)
454 PRK05541 adenylylsulfate kinas 96.0 0.0078 1.7E-07 61.7 4.6 28 486-513 5-32 (176)
455 PHA02530 pseT polynucleotide k 96.0 0.0059 1.3E-07 67.7 4.0 36 488-524 2-37 (300)
456 PRK00889 adenylylsulfate kinas 96.0 0.022 4.7E-07 58.4 7.8 37 488-524 4-43 (175)
457 PF02562 PhoH: PhoH-like prote 96.0 0.0075 1.6E-07 64.3 4.5 23 490-512 21-43 (205)
458 PRK08233 hypothetical protein; 95.9 0.007 1.5E-07 61.6 4.1 33 489-521 4-37 (182)
459 PRK12608 transcription termina 95.9 0.022 4.9E-07 65.7 8.5 24 489-512 134-157 (380)
460 cd02019 NK Nucleoside/nucleoti 95.9 0.0099 2.1E-07 52.1 4.3 22 491-512 2-23 (69)
461 PLN03186 DNA repair protein RA 95.9 0.014 3.1E-07 66.7 6.8 117 484-601 119-270 (342)
462 cd01125 repA Hexameric Replica 95.9 0.024 5.2E-07 61.2 8.2 21 491-511 4-24 (239)
463 TIGR02173 cyt_kin_arch cytidyl 95.9 0.0067 1.4E-07 61.1 3.7 29 491-519 3-31 (171)
464 COG4178 ABC-type uncharacteriz 95.9 0.03 6.6E-07 68.0 9.6 29 484-512 415-443 (604)
465 PRK13808 adenylate kinase; Pro 95.9 0.044 9.5E-07 62.5 10.5 33 491-525 3-35 (333)
466 PRK13894 conjugal transfer ATP 95.9 0.0091 2E-07 67.7 5.0 72 487-558 147-229 (319)
467 TIGR00959 ffh signal recogniti 95.8 0.071 1.5E-06 62.9 12.3 37 486-522 97-137 (428)
468 cd03223 ABCD_peroxisomal_ALDP 95.8 0.037 8E-07 56.6 8.8 28 485-512 24-51 (166)
469 cd03229 ABC_Class3 This class 95.8 0.021 4.7E-07 58.7 7.1 27 486-512 24-50 (178)
470 KOG0477 DNA replication licens 95.8 0.0029 6.4E-08 75.4 0.7 171 456-642 450-653 (854)
471 cd03284 ABC_MutS1 MutS1 homolo 95.8 0.026 5.7E-07 60.4 7.7 22 489-510 31-52 (216)
472 PRK14526 adenylate kinase; Pro 95.7 0.0087 1.9E-07 64.0 3.8 34 490-525 2-35 (211)
473 PRK06731 flhF flagellar biosyn 95.7 0.072 1.6E-06 59.2 11.1 110 487-608 74-202 (270)
474 PF01583 APS_kinase: Adenylyls 95.7 0.011 2.3E-07 60.5 4.2 38 488-525 2-42 (156)
475 PRK14729 miaA tRNA delta(2)-is 95.7 0.11 2.4E-06 58.6 12.5 162 488-680 4-170 (300)
476 PF08433 KTI12: Chromatin asso 95.7 0.021 4.6E-07 63.3 6.7 70 491-560 4-82 (270)
477 PRK08099 bifunctional DNA-bind 95.7 0.022 4.8E-07 66.5 7.2 37 488-524 219-255 (399)
478 PRK10436 hypothetical protein; 95.6 0.034 7.3E-07 66.2 8.5 94 451-558 194-297 (462)
479 PF01926 MMR_HSR1: 50S ribosom 95.6 0.034 7.4E-07 52.7 7.0 21 491-511 2-22 (116)
480 PRK14737 gmk guanylate kinase; 95.6 0.018 3.8E-07 60.4 5.4 26 487-512 3-28 (186)
481 PRK12339 2-phosphoglycerate ki 95.6 0.011 2.4E-07 62.5 3.9 35 488-524 3-37 (197)
482 COG1126 GlnQ ABC-type polar am 95.6 0.042 9.2E-07 58.9 8.1 25 486-510 26-50 (240)
483 TIGR00150 HI0065_YjeE ATPase, 95.6 0.013 2.8E-07 58.5 4.1 30 486-515 20-49 (133)
484 TIGR02655 circ_KaiC circadian 95.5 0.043 9.3E-07 65.7 9.2 39 484-522 17-59 (484)
485 TIGR01448 recD_rel helicase, p 95.5 0.037 8E-07 69.3 8.9 98 490-604 340-455 (720)
486 PF05970 PIF1: PIF1-like helic 95.5 0.051 1.1E-06 62.7 9.5 39 486-524 20-61 (364)
487 PLN02459 probable adenylate ki 95.5 0.013 2.8E-07 64.7 4.3 36 488-525 29-64 (261)
488 COG0529 CysC Adenylylsulfate k 95.5 0.045 9.7E-07 57.0 7.9 41 485-525 20-63 (197)
489 TIGR02524 dot_icm_DotB Dot/Icm 95.5 0.028 6.1E-07 64.8 7.3 70 489-558 135-222 (358)
490 PRK10078 ribose 1,5-bisphospho 95.5 0.012 2.5E-07 61.2 3.7 29 489-517 3-31 (186)
491 COG1120 FepC ABC-type cobalami 95.5 0.028 6E-07 61.9 6.8 26 487-512 27-52 (258)
492 PRK12727 flagellar biosynthesi 95.5 0.065 1.4E-06 64.5 10.2 26 487-512 349-374 (559)
493 PF13479 AAA_24: AAA domain 95.5 0.021 4.5E-07 60.9 5.6 68 488-560 3-80 (213)
494 PF13086 AAA_11: AAA domain; P 95.4 0.0093 2E-07 62.2 2.8 22 491-512 20-41 (236)
495 PRK05480 uridine/cytidine kina 95.4 0.017 3.6E-07 60.9 4.7 38 487-524 5-43 (209)
496 PF08423 Rad51: Rad51; InterP 95.4 0.024 5.1E-07 62.4 6.0 116 492-608 42-192 (256)
497 COG0467 RAD55 RecA-superfamily 95.4 0.018 4E-07 62.9 4.9 41 484-524 19-62 (260)
498 PRK04220 2-phosphoglycerate ki 95.4 0.034 7.3E-07 62.6 7.0 32 485-516 89-120 (301)
499 TIGR02538 type_IV_pilB type IV 95.4 0.033 7.1E-07 67.9 7.5 94 451-558 292-395 (564)
500 PF09848 DUF2075: Uncharacteri 95.3 0.022 4.7E-07 65.3 5.6 23 490-512 3-25 (352)
No 1
>KOG0734 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.7e-95 Score=814.99 Aligned_cols=438 Identities=29% Similarity=0.462 Sum_probs=404.0
Q ss_pred CCCCCCCcccCcHHHHHHHHHHHHhhcChhHHHhcCCCCCceeEecCCCCCChHHHHHHHHHHcCCCEEEeechhhhhhh
Q 035561 449 NPPIPLKDFASVESMREEINEVVAFLQNPSAFQEMGARAPRGVLIVGERGTGKTSLALAIAAEARVPVVNVEAQELEAGL 528 (979)
Q Consensus 449 ~~~~~f~DIvGleevke~L~eiV~~L~~p~~f~~lG~~~P~gVLL~GPPGTGKTtLArAlA~elg~~~i~Is~sdL~~~~ 528 (979)
..+++|+||-|.+++|++|.|+|+||++|.+|.++|.+.|+||||+||||||||+||||+|+|+++||++.++++|- ++
T Consensus 298 ~~nv~F~dVkG~DEAK~ELeEiVefLkdP~kftrLGGKLPKGVLLvGPPGTGKTlLARAvAGEA~VPFF~~sGSEFd-Em 376 (752)
T KOG0734|consen 298 MKNVTFEDVKGVDEAKQELEEIVEFLKDPTKFTRLGGKLPKGVLLVGPPGTGKTLLARAVAGEAGVPFFYASGSEFD-EM 376 (752)
T ss_pred hcccccccccChHHHHHHHHHHHHHhcCcHHhhhccCcCCCceEEeCCCCCchhHHHHHhhcccCCCeEeccccchh-hh
Confidence 45789999999999999999999999999999999999999999999999999999999999999999999999996 89
Q ss_pred hcccchhhHHHHHHHHHhcCCeEEEEcCccccccccccccCCCchhhHHHHHHHHhhhcccccCCeEEEEecccchhhch
Q 035561 529 WVGQSASNVRELFQTARDLAPVIIFVEDFDLFAGVRGQFIHTKQQDHESFINQLLVELDGFEKQDGVVLMATTRNIKQID 608 (979)
Q Consensus 529 ~vG~~~~~Ir~lF~~A~~~aP~ILfIDEIDaL~~~r~~~~~~~~~~~~~iln~LL~~LDg~~~~~~ViVIATTN~pe~LD 608 (979)
|+|+++.++|++|..|++++||||||||||+++++|.+. ......+++||||.+||||..+++|+|||+||.|+.||
T Consensus 377 ~VGvGArRVRdLF~aAk~~APcIIFIDEiDavG~kR~~~---~~~y~kqTlNQLLvEmDGF~qNeGiIvigATNfpe~LD 453 (752)
T KOG0734|consen 377 FVGVGARRVRDLFAAAKARAPCIIFIDEIDAVGGKRNPS---DQHYAKQTLNQLLVEMDGFKQNEGIIVIGATNFPEALD 453 (752)
T ss_pred hhcccHHHHHHHHHHHHhcCCeEEEEechhhhcccCCcc---HHHHHHHHHHHHHHHhcCcCcCCceEEEeccCChhhhh
Confidence 999999999999999999999999999999999988642 23377899999999999999999999999999999999
Q ss_pred hhhhcCCceeeEeccCCCCHHHHHHHHHHHHHhccchhhhhhhhHHHHHHHcCCCCHHHHHHHHHHHhhhhhccCCCChH
Q 035561 609 EALQRPGRMDRIFNLQKPTQSEREKILRIAAQETMDEELIDLVDWRKVAEKTALLRPIELKLVPVALEGSAFRSKFLDTD 688 (979)
Q Consensus 609 pALlRpgRFd~~I~~~~Pd~eeR~~IL~~~l~~~~~~~l~~dvdL~~LA~~T~GfsgaDL~~Lv~aa~~aa~r~~~~s~~ 688 (979)
+||.||||||++|.+|.||...|.+||+.|+.+. ...+++|+.-||+-|+||+|+||+|+++.
T Consensus 454 ~AL~RPGRFD~~v~Vp~PDv~GR~eIL~~yl~ki---~~~~~VD~~iiARGT~GFsGAdLaNlVNq-------------- 516 (752)
T KOG0734|consen 454 KALTRPGRFDRHVTVPLPDVRGRTEILKLYLSKI---PLDEDVDPKIIARGTPGFSGADLANLVNQ-------------- 516 (752)
T ss_pred HHhcCCCccceeEecCCCCcccHHHHHHHHHhcC---CcccCCCHhHhccCCCCCchHHHHHHHHH--------------
Confidence 9999999999999999999999999999999987 67789999999999999999999999643
Q ss_pred HHhhhcchhhhccCCCccccccchhhhhhhhhhhhhcCccccHHHHHHHHHhhhccccccccccccCCCCccccccccch
Q 035561 689 ELMSYCGWFATFSGVVPKWFRKTKIVKKISRMLVDHLGLTLTKEDLQNVVDLMEPYGQISNGIELLTPPLDWTRETKLPH 768 (979)
Q Consensus 689 ei~~~~d~~aAl~~~~P~~lR~~~llk~~~v~w~DiGGl~vtkedL~eAIe~~~kyg~i~aG~e~~sp~l~~~~eek~~i 768 (979)
+++.+|.+ |...+++++|+.|-|+ |.+|.|+++..+ ++|.|++|
T Consensus 517 -----AAlkAa~d-----------------------ga~~VtM~~LE~akDr------IlMG~ERks~~i--~~eak~~T 560 (752)
T KOG0734|consen 517 -----AALKAAVD-----------------------GAEMVTMKHLEFAKDR------ILMGPERKSMVI--DEEAKKIT 560 (752)
T ss_pred -----HHHHHHhc-----------------------CcccccHHHHhhhhhh------eeeccccccccc--Chhhhhhh
Confidence 23333322 3346789999999885 899999998876 88999999
Q ss_pred hhhhhhHHHHHhhcCCCCccceEEeecCCcCcceeeeeccccccCCCCCCcccHHHHHHHHHHHhhhHHHHHhhcccccc
Q 035561 769 AVWAAGRGLIALLLPNFDTVDNLWLEPCAWEGIGCTKITKAEKEGSMSGNPESRSYLEKKLVFCFGSYAAAQLLLPFGEE 848 (979)
Q Consensus 769 AyHEAGHALVa~lLp~~dpV~kVtIiPrg~~alG~t~~~~~~~~~~~~~~~~Tk~~L~~~I~vlLgGRaAEElvlgfG~~ 848 (979)
||||+|||+||.+..++.|+||+||.||| .++|.|.++|.. ++...||.+|+.++.||||||+|||++||...+
T Consensus 561 AyHE~GHAivA~yTk~A~PlhKaTImPRG-~sLG~t~~LPe~-----D~~~~Tk~q~LA~lDV~MGGRvAEELIfG~D~i 634 (752)
T KOG0734|consen 561 AYHEGGHAIVALYTKGAMPLHKATIMPRG-PSLGHTSQLPEK-----DRYSITKAQLLARLDVCMGGRVAEELIFGTDKI 634 (752)
T ss_pred hhhccCceEEEeecCCCccccceeeccCC-ccccceeecCcc-----chhhHHHHHHHHHHHHhhcchHHHHHhccCCcc
Confidence 99999999999999999999999999999 789999999864 456799999999999999999999999777778
Q ss_pred cccChhHHHHHHHHHHHHHHHhCCCCCCCCccccccchhhhccCCCChHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Q 035561 849 NLLSSSEIKQAQEIATRMVLQYGWGPDDSPAIYYSSNAAAAMSMGSNHEYEMATKVEKVYDLAYYKAKEMLQKNRKVLEK 928 (979)
Q Consensus 849 stGAs~Dl~~AT~iAr~MV~~~GMs~~~g~l~~~~~~~~~~~~~s~~~~~~id~EV~kil~~Ay~rAk~IL~eNr~~L~~ 928 (979)
|+||++||++||++|++||++||||++.||+.+..... ..+++.++.+.||+||+++|+.+|+||+.||+.|...|++
T Consensus 635 TsGAssDl~qAT~lA~~MVt~fGMSd~vG~v~~~~~~~--~~s~~~~t~~lidaEi~~lL~~sYeRak~iL~~h~kEl~~ 712 (752)
T KOG0734|consen 635 TSGASSDLDQATKLARRMVTKFGMSDKVGPVTLSAEDN--SSSLSPRTQELIDAEIKRLLRDSYERAKSILKTHKKELHA 712 (752)
T ss_pred cccccchHHHHHHHHHHHHHHcCccccccceeeeccCC--CCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999998876554 3457788889999999999999999999999999999999
Q ss_pred HHHHHHHhcccCHHHHHHHHhhc
Q 035561 929 VVEELLEYEILTGKDLERLMDSN 951 (979)
Q Consensus 929 LAeaLLEkEtL~~eEi~~Il~~~ 951 (979)
||++|||+|||+++||++++...
T Consensus 713 LA~ALleYETL~A~eik~vl~g~ 735 (752)
T KOG0734|consen 713 LAEALLEYETLDAKEIKRVLKGK 735 (752)
T ss_pred HHHHHHHhhcCCHHHHHHHHhcc
Confidence 99999999999999999999643
No 2
>KOG0731 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.8e-94 Score=851.41 Aligned_cols=611 Identities=31% Similarity=0.430 Sum_probs=508.2
Q ss_pred eEeecCccccccCChhhhhhhccCCcccccchhhhhhhhhhhHHHHHHHHHHHHHhhhcchhhhHHHHHHHHHHHhhccc
Q 035561 89 FVVRTPEDEVVKGFPEVELKWMFGDKEVVVPKAIGLHLYHGWKAWREEAKADLKRRLLEDVDFGKQYVAQRQERILLDRD 168 (979)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 168 (979)
+++.||.+..+ |.+-.+ ..++-|| |+++...++|+++|++-+.+|.||..
T Consensus 139 ~~~~t~~~~~~--f~~~~~---------------~~~~~~~---~~ei~~~df~~~~le~g~v~~~evv~---------- 188 (774)
T KOG0731|consen 139 FVQSTPKGLAV--FMEALD---------------LDRVESG---WQEITWRDFKQKLLEKGEVGKLEVVN---------- 188 (774)
T ss_pred ceecchhHHHH--HHHHhc---------------ccccccc---ceeeeHHHHHHHHhhccceeeEEeec----------
Confidence 67777776555 555443 5667677 99999999999999999999988876
Q ss_pred chhhhhcccccccccccCccchhhhhhHhhHhhheeccccceeEEEeecCCceeeeehHHHHHHHhhhcChHHHHHHHHh
Q 035561 169 RVVSKTWYNEDKSRWEMDPVAVPYAVSNKIVESARIRHDWGAMYLSLKGDDKEFYVDIKEFEVLFEDFGGFDELYMKMLA 248 (979)
Q Consensus 169 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 248 (979)
||+++|..+...++.||
T Consensus 189 ----------------------~~~~~rv~~~~~~~~~~----------------------------------------- 205 (774)
T KOG0731|consen 189 ----------------------PYAVVRVELDRGRIPGD----------------------------------------- 205 (774)
T ss_pred ----------------------cceeEEEEEeccccccc-----------------------------------------
Confidence 78888888888888888
Q ss_pred cCCCceeeEeeecCCCcchhHHHHHHHHHHHHHhhhhhcccccchhhHhHHHHhhhhchhhhHHhhhhhhhhccchhhHh
Q 035561 249 CGIPTAVHVMRIPFSELDFYQQFLLIVRLAYLSLNGLWKTGTVSFWRDLILENVRNTNDDIMMMIVFPLLDCIIPYSVRM 328 (979)
Q Consensus 249 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 328 (979)
....-..||.+-|.+.-+-+-....+++.+. ...+|++. +.+.....
T Consensus 206 ------------------------------~~~~~~~~~i~~v~~F~~kl~~a~~~l~~~~--~~~~pV~~-~~~~~~~~ 252 (774)
T KOG0731|consen 206 ------------------------------RLIQKVWFNIRSVDNFERKLDEAQRNLGIDT--VVRVPVTY-ISESLLDL 252 (774)
T ss_pred ------------------------------cceeeEEEEecccchHHHHHHHHHHHhCCCc--eeEeeeEE-eecchhhh
Confidence 0001111222222222222333334444444 67778887 88889999
Q ss_pred hhccCCCccccccccchhhhhcccccCceEEeecCCCcchHHHHHHHHHHHHHHHHHHHHHHhhhcccccCCCCCCCCcc
Q 035561 329 KLGMAWPQYMDQSVGSTWYLGWQSEVEMSFNSRKTDDLNWSIWFLIRTAVYGYVLFHILRFMKRKIPRLLGFGPMRRDPN 408 (979)
Q Consensus 329 ~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~pn 408 (979)
.+++.|| +-..+|..||+.|.+.. .. .........+ +.|+.
T Consensus 253 ~~~~~~p--ti~~~~~l~~l~r~~~~-~~-~~~~gg~~g~-----------------------------~~f~~------ 293 (774)
T KOG0731|consen 253 ILGLLLP--TILLLGGLLYLSRRSEG-MG-KGGPGGGLGP-----------------------------RLFGV------ 293 (774)
T ss_pred hhhhhhH--HHHHHHhHheeeeeccc-cc-ccCCccccCc-----------------------------ceeee------
Confidence 9999999 33899999999998764 22 0000000000 00111
Q ss_pred chhhHHHHHHHHHHHHHHHhhhhcCCCchhHHHHhhcccCCCCCCCCcccCcHHHHHHHHHHHHhhcChhHHHhcCCCCC
Q 035561 409 FRKLRRVKAYFNYRVRRIKRKKKAGIDPIKNAFERMKRVKNPPIPLKDFASVESMREEINEVVAFLQNPSAFQEMGARAP 488 (979)
Q Consensus 409 f~~~~~~~~~~~~~~~~~~~~~k~~~~p~~~~~~~l~~v~~~~~~f~DIvGleevke~L~eiV~~L~~p~~f~~lG~~~P 488 (979)
++ ...+ ......++++|+||+|++++|++|.|+|.+|+||+.|.++|+++|
T Consensus 294 -~k----------------s~~k------------~~~~~~t~V~FkDVAG~deAK~El~E~V~fLKNP~~Y~~lGAKiP 344 (774)
T KOG0731|consen 294 -SK----------------SYKK------------FKNEGNTGVKFKDVAGVDEAKEELMEFVKFLKNPEQYQELGAKIP 344 (774)
T ss_pred -cc----------------ceee------------eccCCCCCCccccccCcHHHHHHHHHHHHHhcCHHHHHHcCCcCc
Confidence 00 0000 011245679999999999999999999999999999999999999
Q ss_pred ceeEecCCCCCChHHHHHHHHHHcCCCEEEeechhhhhhhhcccchhhHHHHHHHHHhcCCeEEEEcCcccccccc-ccc
Q 035561 489 RGVLIVGERGTGKTSLALAIAAEARVPVVNVEAQELEAGLWVGQSASNVRELFQTARDLAPVIIFVEDFDLFAGVR-GQF 567 (979)
Q Consensus 489 ~gVLL~GPPGTGKTtLArAlA~elg~~~i~Is~sdL~~~~~vG~~~~~Ir~lF~~A~~~aP~ILfIDEIDaL~~~r-~~~ 567 (979)
+|+||+||||||||+||||+|+|+|+||+++++|+|+ ++++|.+++++|++|..|+.++|||+||||||++++.| +..
T Consensus 345 kGvLL~GPPGTGKTLLAKAiAGEAgVPF~svSGSEFv-E~~~g~~asrvr~lf~~ar~~aP~iifideida~~~~r~G~~ 423 (774)
T KOG0731|consen 345 KGVLLVGPPGTGKTLLAKAIAGEAGVPFFSVSGSEFV-EMFVGVGASRVRDLFPLARKNAPSIIFIDEIDAVGRKRGGKG 423 (774)
T ss_pred CceEEECCCCCcHHHHHHHHhcccCCceeeechHHHH-HHhcccchHHHHHHHHHhhccCCeEEEecccccccccccccc
Confidence 9999999999999999999999999999999999999 88999999999999999999999999999999999999 444
Q ss_pred cCCCchhhHHHHHHHHhhhcccccCCeEEEEecccchhhchhhhhcCCceeeEeccCCCCHHHHHHHHHHHHHhccchhh
Q 035561 568 IHTKQQDHESFINQLLVELDGFEKQDGVVLMATTRNIKQIDEALQRPGRMDRIFNLQKPTQSEREKILRIAAQETMDEEL 647 (979)
Q Consensus 568 ~~~~~~~~~~iln~LL~~LDg~~~~~~ViVIATTN~pe~LDpALlRpgRFd~~I~~~~Pd~eeR~~IL~~~l~~~~~~~l 647 (979)
.++++++.++++||||.+||||..+.+|+|+|+||+++.||+||+||||||+.|.++.|+..+|.+|++.|+++....
T Consensus 424 ~~~~~~e~e~tlnQll~emDgf~~~~~vi~~a~tnr~d~ld~allrpGRfdr~i~i~~p~~~~r~~i~~~h~~~~~~~-- 501 (774)
T KOG0731|consen 424 TGGGQDEREQTLNQLLVEMDGFETSKGVIVLAATNRPDILDPALLRPGRFDRQIQIDLPDVKGRASILKVHLRKKKLD-- 501 (774)
T ss_pred cCCCChHHHHHHHHHHHHhcCCcCCCcEEEEeccCCccccCHHhcCCCccccceeccCCchhhhHHHHHHHhhccCCC--
Confidence 567889999999999999999999999999999999999999999999999999999999999999999999987321
Q ss_pred hhhhhHHHHHHHcCCCCHHHHHHHHHHHhhhhhccCCCChHHHhhhcchhhhccCCCccccccchhhhhhhhhhhhhcCc
Q 035561 648 IDLVDWRKVAEKTALLRPIELKLVPVALEGSAFRSKFLDTDELMSYCGWFATFSGVVPKWFRKTKIVKKISRMLVDHLGL 727 (979)
Q Consensus 648 ~~dvdL~~LA~~T~GfsgaDL~~Lv~aa~~aa~r~~~~s~~ei~~~~d~~aAl~~~~P~~lR~~~llk~~~v~w~DiGGl 727 (979)
.+++|+..+|.+|+||+|+||.++|+++...+.| .+..
T Consensus 502 ~e~~dl~~~a~~t~gf~gadl~n~~neaa~~a~r------------------------------------------~~~~ 539 (774)
T KOG0731|consen 502 DEDVDLSKLASLTPGFSGADLANLCNEAALLAAR------------------------------------------KGLR 539 (774)
T ss_pred cchhhHHHHHhcCCCCcHHHHHhhhhHHHHHHHH------------------------------------------hccC
Confidence 5889999999999999999999998765443332 2235
Q ss_pred cccHHHHHHHHHhhhccccccccccccCCCCccccccccchhhhhhhHHHHHhhcCCCCccceEEeecCCcCcceeeeec
Q 035561 728 TLTKEDLQNVVDLMEPYGQISNGIELLTPPLDWTRETKLPHAVWAAGRGLIALLLPNFDTVDNLWLEPCAWEGIGCTKIT 807 (979)
Q Consensus 728 ~vtkedL~eAIe~~~kyg~i~aG~e~~sp~l~~~~eek~~iAyHEAGHALVa~lLp~~dpV~kVtIiPrg~~alG~t~~~ 807 (979)
.++.++|++|+++ +.+|+++++..+ +.++|+.+||||||||+++|+|++.|||.||||+| |+ ++||+++.
T Consensus 540 ~i~~~~~~~a~~R------vi~G~~~~~~~~--~~~~~~~~a~~eagha~~g~~l~~~dpl~kvsIiP-Gq-alG~a~~~ 609 (774)
T KOG0731|consen 540 EIGTKDLEYAIER------VIAGMEKKSRVL--SLEEKKTVAYHEAGHAVVGWLLEHADPLLKVSIIP-GQ-ALGYAQYL 609 (774)
T ss_pred ccchhhHHHHHHH------Hhccccccchhc--CHhhhhhhhhhhccchhhhccccccCcceeEEecc-CC-ccceEEEC
Confidence 6788999999996 688999887766 77889999999999999999999999999999999 64 99999999
Q ss_pred cccccCCCCCCcccHHHHHHHHHHHhhhHHHHHhhcccccccccChhHHHHHHHHHHHHHHHhCCCCCCCCccccccc--
Q 035561 808 KAEKEGSMSGNPESRSYLEKKLVFCFGSYAAAQLLLPFGEENLLSSSEIKQAQEIATRMVLQYGWGPDDSPAIYYSSN-- 885 (979)
Q Consensus 808 ~~~~~~~~~~~~~Tk~~L~~~I~vlLgGRaAEElvlgfG~~stGAs~Dl~~AT~iAr~MV~~~GMs~~~g~l~~~~~~-- 885 (979)
|.. .++.|+++|.++||++||||||||++|| +++||||++|+++||++|++||++|||+++.|+++|....
T Consensus 610 P~~------~~l~sk~ql~~rm~m~LGGRaAEev~fg-~~iTtga~ddl~kvT~~A~~~V~~~Gms~kig~~~~~~~~~~ 682 (774)
T KOG0731|consen 610 PTD------DYLLSKEQLFDRMVMALGGRAAEEVVFG-SEITTGAQDDLEKVTKIARAMVASFGMSEKIGPISFQMLLPG 682 (774)
T ss_pred Ccc------cccccHHHHHHHHHHHhCcchhhheecC-CccCchhhccHHHHHHHHHHHHHHcCcccccCceeccCcccc
Confidence 863 3789999999999999999999999954 5899999999999999999999999999999999984322
Q ss_pred -hhhhccCCCChHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhcccCHHHHHHHHhhcCCCC
Q 035561 886 -AAAAMSMGSNHEYEMATKVEKVYDLAYYKAKEMLQKNRKVLEKVVEELLEYEILTGKDLERLMDSNGGIR 955 (979)
Q Consensus 886 -~~~~~~~s~~~~~~id~EV~kil~~Ay~rAk~IL~eNr~~L~~LAeaLLEkEtL~~eEi~~Il~~~~~~~ 955 (979)
.....+++..++..||.||++++..||++|.++|.+|++.|+.||+.|||||+|+++|+.+|++.++..+
T Consensus 683 ~~~~~~p~s~~~~~~Id~ev~~lv~~ay~~~~~ll~~n~~~l~~ia~~LLeke~l~~ee~~~ll~~~~~~~ 753 (774)
T KOG0731|consen 683 DESFRKPYSEKTAQLIDTEVRRLVQKAYERTKELLRTNRDKLDKIAEVLLEKEVLTGEEIIALLGERPPGM 753 (774)
T ss_pred cccccCccchhHHHHHHHHHHHHHhhHHHHHHHHHHHhHHHHHHHHHHHHHhhhccHHHHHHHhccCCCcc
Confidence 1234568889999999999999999999999999999999999999999999999999999998776555
No 3
>COG0465 HflB ATP-dependent Zn proteases [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.6e-92 Score=822.29 Aligned_cols=441 Identities=32% Similarity=0.524 Sum_probs=411.1
Q ss_pred CCCCCCCcccCcHHHHHHHHHHHHhhcChhHHHhcCCCCCceeEecCCCCCChHHHHHHHHHHcCCCEEEeechhhhhhh
Q 035561 449 NPPIPLKDFASVESMREEINEVVAFLQNPSAFQEMGARAPRGVLIVGERGTGKTSLALAIAAEARVPVVNVEAQELEAGL 528 (979)
Q Consensus 449 ~~~~~f~DIvGleevke~L~eiV~~L~~p~~f~~lG~~~P~gVLL~GPPGTGKTtLArAlA~elg~~~i~Is~sdL~~~~ 528 (979)
...++|.|++|.+++|++|.++|++|++|.+|..+|.+.|+|+||+||||||||+||||+|+++++||+++|+|+|+ ++
T Consensus 144 ~~~v~F~DVAG~dEakeel~EiVdfLk~p~ky~~lGakiPkGvlLvGpPGTGKTLLAkAvAgEA~VPFf~iSGS~FV-em 222 (596)
T COG0465 144 QVKVTFADVAGVDEAKEELSELVDFLKNPKKYQALGAKIPKGVLLVGPPGTGKTLLAKAVAGEAGVPFFSISGSDFV-EM 222 (596)
T ss_pred ccCcChhhhcCcHHHHHHHHHHHHHHhCchhhHhcccccccceeEecCCCCCcHHHHHHHhcccCCCceeccchhhh-hh
Confidence 45789999999999999999999999999999999999999999999999999999999999999999999999999 89
Q ss_pred hcccchhhHHHHHHHHHhcCCeEEEEcCccccccccccccCCCchhhHHHHHHHHhhhcccccCCeEEEEecccchhhch
Q 035561 529 WVGQSASNVRELFQTARDLAPVIIFVEDFDLFAGVRGQFIHTKQQDHESFINQLLVELDGFEKQDGVVLMATTRNIKQID 608 (979)
Q Consensus 529 ~vG~~~~~Ir~lF~~A~~~aP~ILfIDEIDaL~~~r~~~~~~~~~~~~~iln~LL~~LDg~~~~~~ViVIATTN~pe~LD 608 (979)
|+|.+++++|++|.+|++++|||+||||||+++++|+.+.++++++.++++||||.+||||..+.+|+|+|+||+|+.+|
T Consensus 223 fVGvGAsRVRdLF~qAkk~aP~IIFIDEiDAvGr~Rg~g~GggnderEQTLNQlLvEmDGF~~~~gviviaaTNRpdVlD 302 (596)
T COG0465 223 FVGVGASRVRDLFEQAKKNAPCIIFIDEIDAVGRQRGAGLGGGNDEREQTLNQLLVEMDGFGGNEGVIVIAATNRPDVLD 302 (596)
T ss_pred hcCCCcHHHHHHHHHhhccCCCeEEEehhhhcccccCCCCCCCchHHHHHHHHHHhhhccCCCCCceEEEecCCCcccch
Confidence 99999999999999999999999999999999999988888899999999999999999999999999999999999999
Q ss_pred hhhhcCCceeeEeccCCCCHHHHHHHHHHHHHhccchhhhhhhhHHHHHHHcCCCCHHHHHHHHHHHhhhhhccCCCChH
Q 035561 609 EALQRPGRMDRIFNLQKPTQSEREKILRIAAQETMDEELIDLVDWRKVAEKTALLRPIELKLVPVALEGSAFRSKFLDTD 688 (979)
Q Consensus 609 pALlRpgRFd~~I~~~~Pd~eeR~~IL~~~l~~~~~~~l~~dvdL~~LA~~T~GfsgaDL~~Lv~aa~~aa~r~~~~s~~ 688 (979)
|||+||||||++|.++.||..+|++|++.|+++. +...++|+..+|+.|+||+|+||.++++.+.
T Consensus 303 ~ALlRpgRFDRqI~V~~PDi~gRe~IlkvH~~~~---~l~~~Vdl~~iAr~tpGfsGAdL~nl~NEAa------------ 367 (596)
T COG0465 303 PALLRPGRFDRQILVELPDIKGREQILKVHAKNK---PLAEDVDLKKIARGTPGFSGADLANLLNEAA------------ 367 (596)
T ss_pred HhhcCCCCcceeeecCCcchhhHHHHHHHHhhcC---CCCCcCCHHHHhhhCCCcccchHhhhHHHHH------------
Confidence 9999999999999999999999999999999987 6678999999999999999999999965433
Q ss_pred HHhhhcchhhhccCCCccccccchhhhhhhhhhhhhcCccccHHHHHHHHHhhhccccccccccccCCCCccccccccch
Q 035561 689 ELMSYCGWFATFSGVVPKWFRKTKIVKKISRMLVDHLGLTLTKEDLQNVVDLMEPYGQISNGIELLTPPLDWTRETKLPH 768 (979)
Q Consensus 689 ei~~~~d~~aAl~~~~P~~lR~~~llk~~~v~w~DiGGl~vtkedL~eAIe~~~kyg~i~aG~e~~sp~l~~~~eek~~i 768 (979)
+.++ | .+...++..||.+|+++ +.+|++++++.+ ++++|+.|
T Consensus 368 -------l~aa---------r--------------~n~~~i~~~~i~ea~dr------v~~G~erks~vi--se~ek~~~ 409 (596)
T COG0465 368 -------LLAA---------R--------------RNKKEITMRDIEEAIDR------VIAGPERKSRVI--SEAEKKIT 409 (596)
T ss_pred -------HHHH---------H--------------hcCeeEeccchHHHHHH------HhcCcCcCCccc--Chhhhcch
Confidence 3332 1 12245788999999996 799999999865 88999999
Q ss_pred hhhhhhHHHHHhhcCCCCccceEEeecCCcCcceeeeeccccccCCCCCCcccHHHHHHHHHHHhhhHHHHHhhcccc-c
Q 035561 769 AVWAAGRGLIALLLPNFDTVDNLWLEPCAWEGIGCTKITKAEKEGSMSGNPESRSYLEKKLVFCFGSYAAAQLLLPFG-E 847 (979)
Q Consensus 769 AyHEAGHALVa~lLp~~dpV~kVtIiPrg~~alG~t~~~~~~~~~~~~~~~~Tk~~L~~~I~vlLgGRaAEElvlgfG-~ 847 (979)
||||||||++++++|++||||||||+||| .++|||.++|.+ +++++||++++++|+++||||||||++ || +
T Consensus 410 AYhEaghalv~~~l~~~d~v~KvtIiPrG-~alG~t~~~Pe~-----d~~l~sk~~l~~~i~~~lgGRaAEel~--~g~e 481 (596)
T COG0465 410 AYHEAGHALVGLLLPDADPVHKVTIIPRG-RALGYTLFLPEE-----DKYLMSKEELLDRIDVLLGGRAAEELI--FGYE 481 (596)
T ss_pred HHHHHHHHHHHHhCCCCcccceeeeccCc-hhhcchhcCCcc-----ccccccHHHHHHHHHHHhCCcHhhhhh--hccc
Confidence 99999999999999999999999999999 889999998853 578899999999999999999999999 67 9
Q ss_pred ccccChhHHHHHHHHHHHHHHHhCCCCCCCCccccccchhhh-------ccCCCChHHHHHHHHHHHHHHHHHHHHHHHH
Q 035561 848 ENLLSSSEIKQAQEIATRMVLQYGWGPDDSPAIYYSSNAAAA-------MSMGSNHEYEMATKVEKVYDLAYYKAKEMLQ 920 (979)
Q Consensus 848 ~stGAs~Dl~~AT~iAr~MV~~~GMs~~~g~l~~~~~~~~~~-------~~~s~~~~~~id~EV~kil~~Ay~rAk~IL~ 920 (979)
+||||++|+++||++||.||++||||+.+|++.|...++ .+ ..+|+.++..||.||+++++.||++|++||.
T Consensus 482 ~ttGa~~D~~~at~~ar~mVt~~Gms~~lG~v~~~~~~~-~flg~~~~~~~~Se~ta~~ID~evk~ii~~~y~~a~~il~ 560 (596)
T COG0465 482 ITTGASNDLEKATDLARAMVTEYGMSAKLGPVAYEQVEG-VFLGRYQKAKNYSEETAQEIDREVKDIIDEAYERAKELLN 560 (596)
T ss_pred ccccchhhHHHHHHHHHHhhhhcCcchhhCceehhhccc-ccccccccccCccHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999988655 22 2588899999999999999999999999999
Q ss_pred HhHHHHHHHHHHHHHhcccCHHHHHHHHhhcC
Q 035561 921 KNRKVLEKVVEELLEYEILTGKDLERLMDSNG 952 (979)
Q Consensus 921 eNr~~L~~LAeaLLEkEtL~~eEi~~Il~~~~ 952 (979)
+|++.++.+|+.|+|+|||+++++.+|+....
T Consensus 561 ~~~~~l~~~~~~Lle~Eti~~~~i~~i~~~~~ 592 (596)
T COG0465 561 ENKDALETLAEMLLEKETIDAEEIKDILAGRK 592 (596)
T ss_pred HhHHHHHHHHHHHHHhhccCHHHHHHHHhccc
Confidence 99999999999999999999999999997543
No 4
>CHL00176 ftsH cell division protein; Validated
Probab=100.00 E-value=1.1e-81 Score=750.68 Aligned_cols=520 Identities=28% Similarity=0.416 Sum_probs=428.0
Q ss_pred hhhhhcccccCceEEeecCCCcchHHHHHHHHHHHHHHHHHHHHHHhhhcccccCCCCCCCCccchhhHHHHHHHHHHHH
Q 035561 345 TWYLGWQSEVEMSFNSRKTDDLNWSIWFLIRTAVYGYVLFHILRFMKRKIPRLLGFGPMRRDPNFRKLRRVKAYFNYRVR 424 (979)
Q Consensus 345 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~pnf~~~~~~~~~~~~~~~ 424 (979)
+-+.....+.++.+........++|..++..++++.++++.++.++.+... .+.++.+...+|++..
T Consensus 103 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~----------- 169 (638)
T CHL00176 103 SELIQKLKEANIDFDAHPPVLKSNIVTILSNLLLPLILIGVLWFFFQRSSN--FKGGPGQNLMNFGKSK----------- 169 (638)
T ss_pred HHHHHHHHHcCCcEEecCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHh--hcCCCcccccccchhH-----------
Confidence 445566667888888876655566655554443333333333333333311 0111111223444321
Q ss_pred HHHhhhhcCCCchhHHHHhhcccCCCCCCCCcccCcHHHHHHHHHHHHhhcChhHHHhcCCCCCceeEecCCCCCChHHH
Q 035561 425 RIKRKKKAGIDPIKNAFERMKRVKNPPIPLKDFASVESMREEINEVVAFLQNPSAFQEMGARAPRGVLIVGERGTGKTSL 504 (979)
Q Consensus 425 ~~~~~~k~~~~p~~~~~~~l~~v~~~~~~f~DIvGleevke~L~eiV~~L~~p~~f~~lG~~~P~gVLL~GPPGTGKTtL 504 (979)
.+ ......+.++|+||+|+++++++|.+++.+++++..|..+|.+.|+|+||+||||||||++
T Consensus 170 -----~~------------~~~~~~~~~~f~dv~G~~~~k~~l~eiv~~lk~~~~~~~~g~~~p~gVLL~GPpGTGKT~L 232 (638)
T CHL00176 170 -----AR------------FQMEADTGITFRDIAGIEEAKEEFEEVVSFLKKPERFTAVGAKIPKGVLLVGPPGTGKTLL 232 (638)
T ss_pred -----HH------------hhcccCCCCCHHhccChHHHHHHHHHHHHHHhCHHHHhhccCCCCceEEEECCCCCCHHHH
Confidence 00 0011345689999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHcCCCEEEeechhhhhhhhcccchhhHHHHHHHHHhcCCeEEEEcCccccccccccccCCCchhhHHHHHHHHh
Q 035561 505 ALAIAAEARVPVVNVEAQELEAGLWVGQSASNVRELFQTARDLAPVIIFVEDFDLFAGVRGQFIHTKQQDHESFINQLLV 584 (979)
Q Consensus 505 ArAlA~elg~~~i~Is~sdL~~~~~vG~~~~~Ir~lF~~A~~~aP~ILfIDEIDaL~~~r~~~~~~~~~~~~~iln~LL~ 584 (979)
|+++|+++++|++.++++++. +.+.|.+.+.++.+|..|+..+||||||||+|++++.|+...++.+....+++++||.
T Consensus 233 AralA~e~~~p~i~is~s~f~-~~~~g~~~~~vr~lF~~A~~~~P~ILfIDEID~l~~~r~~~~~~~~~e~~~~L~~LL~ 311 (638)
T CHL00176 233 AKAIAGEAEVPFFSISGSEFV-EMFVGVGAARVRDLFKKAKENSPCIVFIDEIDAVGRQRGAGIGGGNDEREQTLNQLLT 311 (638)
T ss_pred HHHHHHHhCCCeeeccHHHHH-HHhhhhhHHHHHHHHHHHhcCCCcEEEEecchhhhhcccCCCCCCcHHHHHHHHHHHh
Confidence 999999999999999999997 6789999999999999999999999999999999988876555566777899999999
Q ss_pred hhcccccCCeEEEEecccchhhchhhhhcCCceeeEeccCCCCHHHHHHHHHHHHHhccchhhhhhhhHHHHHHHcCCCC
Q 035561 585 ELDGFEKQDGVVLMATTRNIKQIDEALQRPGRMDRIFNLQKPTQSEREKILRIAAQETMDEELIDLVDWRKVAEKTALLR 664 (979)
Q Consensus 585 ~LDg~~~~~~ViVIATTN~pe~LDpALlRpgRFd~~I~~~~Pd~eeR~~IL~~~l~~~~~~~l~~dvdL~~LA~~T~Gfs 664 (979)
+||++..+.+++||+|||+++.+|++++||||||+.|.|+.|+.++|.+||+.++++. ...+++++..+|+.|+||+
T Consensus 312 ~~dg~~~~~~ViVIaaTN~~~~LD~ALlRpGRFd~~I~v~lPd~~~R~~IL~~~l~~~---~~~~d~~l~~lA~~t~G~s 388 (638)
T CHL00176 312 EMDGFKGNKGVIVIAATNRVDILDAALLRPGRFDRQITVSLPDREGRLDILKVHARNK---KLSPDVSLELIARRTPGFS 388 (638)
T ss_pred hhccccCCCCeeEEEecCchHhhhhhhhccccCceEEEECCCCHHHHHHHHHHHHhhc---ccchhHHHHHHHhcCCCCC
Confidence 9999988889999999999999999999999999999999999999999999999874 4567889999999999999
Q ss_pred HHHHHHHHHHHhhhhhccCCCChHHHhhhcchhhhccCCCccccccchhhhhhhhhhhhhcCccccHHHHHHHHHhhhcc
Q 035561 665 PIELKLVPVALEGSAFRSKFLDTDELMSYCGWFATFSGVVPKWFRKTKIVKKISRMLVDHLGLTLTKEDLQNVVDLMEPY 744 (979)
Q Consensus 665 gaDL~~Lv~aa~~aa~r~~~~s~~ei~~~~d~~aAl~~~~P~~lR~~~llk~~~v~w~DiGGl~vtkedL~eAIe~~~ky 744 (979)
|+||.++|+.+...+.+ .+...++.+||++|++.
T Consensus 389 gaDL~~lvneAal~a~r------------------------------------------~~~~~It~~dl~~Ai~r---- 422 (638)
T CHL00176 389 GADLANLLNEAAILTAR------------------------------------------RKKATITMKEIDTAIDR---- 422 (638)
T ss_pred HHHHHHHHHHHHHHHHH------------------------------------------hCCCCcCHHHHHHHHHH----
Confidence 99999998755332211 12245788999999986
Q ss_pred ccccccccccCCCCccccccccchhhhhhhHHHHHhhcCCCCccceEEeecCCcCcceeeeeccccccCCCCCCcccHHH
Q 035561 745 GQISNGIELLTPPLDWTRETKLPHAVWAAGRGLIALLLPNFDTVDNLWLEPCAWEGIGCTKITKAEKEGSMSGNPESRSY 824 (979)
Q Consensus 745 g~i~aG~e~~sp~l~~~~eek~~iAyHEAGHALVa~lLp~~dpV~kVtIiPrg~~alG~t~~~~~~~~~~~~~~~~Tk~~ 824 (979)
+..|.+.+. .. ++++|+++|||||||||++++|++.+||+||||+||| .++|||.+.|.+ ++.+.||++
T Consensus 423 --v~~g~~~~~-~~--~~~~~~~vA~hEaGhA~v~~~l~~~~~v~kvtI~prg-~~~G~~~~~p~~-----~~~~~t~~~ 491 (638)
T CHL00176 423 --VIAGLEGTP-LE--DSKNKRLIAYHEVGHAIVGTLLPNHDPVQKVTLIPRG-QAKGLTWFTPEE-----DQSLVSRSQ 491 (638)
T ss_pred --HHhhhccCc-cc--cHHHHHHHHHHhhhhHHHHhhccCCCceEEEEEeecC-CCCCceEecCCc-----ccccccHHH
Confidence 566777653 22 5677999999999999999999999999999999999 678999988753 456789999
Q ss_pred HHHHHHHHhhhHHHHHhhcccccccccChhHHHHHHHHHHHHHHHhCCCCCCCCccccccch-h--------hhccCCCC
Q 035561 825 LEKKLVFCFGSYAAAQLLLPFGEENLLSSSEIKQAQEIATRMVLQYGWGPDDSPAIYYSSNA-A--------AAMSMGSN 895 (979)
Q Consensus 825 L~~~I~vlLgGRaAEElvlgfG~~stGAs~Dl~~AT~iAr~MV~~~GMs~~~g~l~~~~~~~-~--------~~~~~s~~ 895 (979)
|+++|+++|||||||+++||.++.|+||++||++||+||+.||++||||. +||+.|...+. . ....+|+.
T Consensus 492 l~~~i~~~LgGraAE~~~fg~~~~~~Ga~~Dl~~AT~iA~~mv~~~Gm~~-~g~~~~~~~~~~~~~~~~~~~~~~~~s~~ 570 (638)
T CHL00176 492 ILARIVGALGGRAAEEVVFGSTEVTTGASNDLQQVTNLARQMVTRFGMSS-IGPISLESNNSTDPFLGRFMQRNSEYSEE 570 (638)
T ss_pred HHHHHHHHhhhHHHHHHhcCCCCcCCCchhHHHHHHHHHHHHHHHhCCCc-CCceeecCCCCcccccccccccccCcCHH
Confidence 99999999999999999944336899999999999999999999999995 89998865433 1 12346788
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhcccCHHHHHHHHhhcCCCCC
Q 035561 896 HEYEMATKVEKVYDLAYYKAKEMLQKNRKVLEKVVEELLEYEILTGKDLERLMDSNGGIRE 956 (979)
Q Consensus 896 ~~~~id~EV~kil~~Ay~rAk~IL~eNr~~L~~LAeaLLEkEtL~~eEi~~Il~~~~~~~~ 956 (979)
++..+|.||++++++||++|++||++||+.|++||++|+|+|||+++||++|++++...|.
T Consensus 571 ~~~~iD~ev~~~l~~~~~~a~~iL~~~~~~l~~la~~Lle~Etl~~~ei~~il~~~~~~~~ 631 (638)
T CHL00176 571 IADKIDMEVRSILHTCYQYAYQILKDNRVLIDLLVELLLQKETIDGDEFREIVNSYTILPP 631 (638)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhCccCHHHHHHHHhhcCCCCC
Confidence 8999999999999999999999999999999999999999999999999999987765544
No 5
>PRK10733 hflB ATP-dependent metalloprotease; Reviewed
Probab=100.00 E-value=2.3e-78 Score=727.47 Aligned_cols=443 Identities=29% Similarity=0.469 Sum_probs=397.2
Q ss_pred CCCCCCcccCcHHHHHHHHHHHHhhcChhHHHhcCCCCCceeEecCCCCCChHHHHHHHHHHcCCCEEEeechhhhhhhh
Q 035561 450 PPIPLKDFASVESMREEINEVVAFLQNPSAFQEMGARAPRGVLIVGERGTGKTSLALAIAAEARVPVVNVEAQELEAGLW 529 (979)
Q Consensus 450 ~~~~f~DIvGleevke~L~eiV~~L~~p~~f~~lG~~~P~gVLL~GPPGTGKTtLArAlA~elg~~~i~Is~sdL~~~~~ 529 (979)
...+|+|+.|.+..++.|.+++.++.++..+..++.+.|+|+||+||||||||++|+++|++++.||+.++++++. +.+
T Consensus 147 ~~~~~~di~g~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~gill~G~~G~GKt~~~~~~a~~~~~~f~~is~~~~~-~~~ 225 (644)
T PRK10733 147 IKTTFADVAGCDEAKEEVAELVEYLREPSRFQKLGGKIPKGVLMVGPPGTGKTLLAKAIAGEAKVPFFTISGSDFV-EMF 225 (644)
T ss_pred hhCcHHHHcCHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCcEEEECCCCCCHHHHHHHHHHHcCCCEEEEehHHhH-Hhh
Confidence 3467999999999999999999999999999999999999999999999999999999999999999999999997 678
Q ss_pred cccchhhHHHHHHHHHhcCCeEEEEcCccccccccccccCCCchhhHHHHHHHHhhhcccccCCeEEEEecccchhhchh
Q 035561 530 VGQSASNVRELFQTARDLAPVIIFVEDFDLFAGVRGQFIHTKQQDHESFINQLLVELDGFEKQDGVVLMATTRNIKQIDE 609 (979)
Q Consensus 530 vG~~~~~Ir~lF~~A~~~aP~ILfIDEIDaL~~~r~~~~~~~~~~~~~iln~LL~~LDg~~~~~~ViVIATTN~pe~LDp 609 (979)
.|.+...++.+|..|+..+||||||||+|+++++|+...++++....+++++||.+||++..+.+++||||||+|+.|||
T Consensus 226 ~g~~~~~~~~~f~~a~~~~P~IifIDEiD~l~~~r~~~~~g~~~~~~~~ln~lL~~mdg~~~~~~vivIaaTN~p~~lD~ 305 (644)
T PRK10733 226 VGVGASRVRDMFEQAKKAAPCIIFIDEIDAVGRQRGAGLGGGHDEREQTLNQMLVEMDGFEGNEGIIVIAATNRPDVLDP 305 (644)
T ss_pred hcccHHHHHHHHHHHHhcCCcEEEehhHhhhhhccCCCCCCCchHHHHHHHHHHHhhhcccCCCCeeEEEecCChhhcCH
Confidence 99999999999999999999999999999999888765556667778999999999999998899999999999999999
Q ss_pred hhhcCCceeeEeccCCCCHHHHHHHHHHHHHhccchhhhhhhhHHHHHHHcCCCCHHHHHHHHHHHhhhhhccCCCChHH
Q 035561 610 ALQRPGRMDRIFNLQKPTQSEREKILRIAAQETMDEELIDLVDWRKVAEKTALLRPIELKLVPVALEGSAFRSKFLDTDE 689 (979)
Q Consensus 610 ALlRpgRFd~~I~~~~Pd~eeR~~IL~~~l~~~~~~~l~~dvdL~~LA~~T~GfsgaDL~~Lv~aa~~aa~r~~~~s~~e 689 (979)
+++||||||+.|.|+.|+.++|.+||+.|+++. ++..++|+..+|+.|.||||+||.++|+.+...+.++
T Consensus 306 Al~RpgRfdr~i~v~~Pd~~~R~~Il~~~~~~~---~l~~~~d~~~la~~t~G~sgadl~~l~~eAa~~a~r~------- 375 (644)
T PRK10733 306 ALLRPGRFDRQVVVGLPDVRGREQILKVHMRRV---PLAPDIDAAIIARGTPGFSGADLANLVNEAALFAARG------- 375 (644)
T ss_pred HHhCCcccceEEEcCCCCHHHHHHHHHHHhhcC---CCCCcCCHHHHHhhCCCCCHHHHHHHHHHHHHHHHHc-------
Confidence 999999999999999999999999999999875 4567889999999999999999999987665433221
Q ss_pred HhhhcchhhhccCCCccccccchhhhhhhhhhhhhcCccccHHHHHHHHHhhhccccccccccccCCCCccccccccchh
Q 035561 690 LMSYCGWFATFSGVVPKWFRKTKIVKKISRMLVDHLGLTLTKEDLQNVVDLMEPYGQISNGIELLTPPLDWTRETKLPHA 769 (979)
Q Consensus 690 i~~~~d~~aAl~~~~P~~lR~~~llk~~~v~w~DiGGl~vtkedL~eAIe~~~kyg~i~aG~e~~sp~l~~~~eek~~iA 769 (979)
+...++..|+.++++. +..|++.++..+ ++++|+++|
T Consensus 376 -----------------------------------~~~~i~~~d~~~a~~~------v~~g~~~~~~~~--~~~~~~~~a 412 (644)
T PRK10733 376 -----------------------------------NKRVVSMVEFEKAKDK------IMMGAERRSMVM--TEAQKESTA 412 (644)
T ss_pred -----------------------------------CCCcccHHHHHHHHHH------Hhcccccccccc--cHHHHHHHH
Confidence 2245788999999986 456777665544 678899999
Q ss_pred hhhhhHHHHHhhcCCCCccceEEeecCCcCcceeeeeccccccCCCCCCcccHHHHHHHHHHHhhhHHHHHhhccccccc
Q 035561 770 VWAAGRGLIALLLPNFDTVDNLWLEPCAWEGIGCTKITKAEKEGSMSGNPESRSYLEKKLVFCFGSYAAAQLLLPFGEEN 849 (979)
Q Consensus 770 yHEAGHALVa~lLp~~dpV~kVtIiPrg~~alG~t~~~~~~~~~~~~~~~~Tk~~L~~~I~vlLgGRaAEElvlgfG~~s 849 (979)
|||||||||++++|+.+||+||||+||| .++|||.+.|.. +....||++|+++|+++||||||||++||.+++|
T Consensus 413 ~he~gha~~~~~~~~~~~~~~v~i~prg-~~~g~~~~~~~~-----~~~~~~~~~l~~~i~~~lgGraAE~~~~g~~~~t 486 (644)
T PRK10733 413 YHEAGHAIIGRLVPEHDPVHKVTIIPRG-RALGVTFFLPEG-----DAISASRQKLESQISTLYGGRLAEEIIYGPEHVS 486 (644)
T ss_pred HHHHHHHHHHHHccCCCceeEEEEeccC-CCcceeEECCCc-----ccccccHHHHHHHHHHHHhhHHHHHHHhCCCCCC
Confidence 9999999999999999999999999999 578999998753 3356899999999999999999999995444789
Q ss_pred ccChhHHHHHHHHHHHHHHHhCCCCCCCCccccccchh--------hhccCCCChHHHHHHHHHHHHHHHHHHHHHHHHH
Q 035561 850 LLSSSEIKQAQEIATRMVLQYGWGPDDSPAIYYSSNAA--------AAMSMGSNHEYEMATKVEKVYDLAYYKAKEMLQK 921 (979)
Q Consensus 850 tGAs~Dl~~AT~iAr~MV~~~GMs~~~g~l~~~~~~~~--------~~~~~s~~~~~~id~EV~kil~~Ay~rAk~IL~e 921 (979)
+||+|||++||+||+.||++||||+.+|++.|...+.. ....+|++++..+|.||++++++||++|++||++
T Consensus 487 tGa~~Dl~~AT~lA~~mv~~~Gms~~lg~~~~~~~~~~~~lg~~~~~~~~~s~~~~~~id~ev~~il~~~~~~a~~iL~~ 566 (644)
T PRK10733 487 TGASNDIKVATNLARNMVTQWGFSEKLGPLLYAEEEGEVFLGRSVAKAKHMSDETARIIDQEVKALIERNYNRARQLLTD 566 (644)
T ss_pred CCcHHHHHHHHHHHHHHHHHhCCCccccchhhcccccccccccccccccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999988654332 1245788899999999999999999999999999
Q ss_pred hHHHHHHHHHHHHHhcccCHHHHHHHHhhcC
Q 035561 922 NRKVLEKVVEELLEYEILTGKDLERLMDSNG 952 (979)
Q Consensus 922 Nr~~L~~LAeaLLEkEtL~~eEi~~Il~~~~ 952 (979)
|++.|++||++|+|+|||+++||++|++..+
T Consensus 567 ~~~~l~~la~~Lle~etl~~~ei~~i~~~~~ 597 (644)
T PRK10733 567 NMDILHAMKDALMKYETIDAPQIDDLMARRD 597 (644)
T ss_pred hHHHHHHHHHHHHHhceeCHHHHHHHHhcCC
Confidence 9999999999999999999999999998654
No 6
>TIGR01241 FtsH_fam ATP-dependent metalloprotease FtsH. HflB(FtsH) is a pleiotropic protein required for correct cell division in bacteria. It has ATP-dependent zinc metalloprotease activity. It was formerly designated cell division protein FtsH.
Probab=100.00 E-value=8.2e-76 Score=688.11 Aligned_cols=440 Identities=34% Similarity=0.523 Sum_probs=390.7
Q ss_pred CCCCCCCCcccCcHHHHHHHHHHHHhhcChhHHHhcCCCCCceeEecCCCCCChHHHHHHHHHHcCCCEEEeechhhhhh
Q 035561 448 KNPPIPLKDFASVESMREEINEVVAFLQNPSAFQEMGARAPRGVLIVGERGTGKTSLALAIAAEARVPVVNVEAQELEAG 527 (979)
Q Consensus 448 ~~~~~~f~DIvGleevke~L~eiV~~L~~p~~f~~lG~~~P~gVLL~GPPGTGKTtLArAlA~elg~~~i~Is~sdL~~~ 527 (979)
..+.++|+||+|++++|++|++++.+++++..|...|.+.|+|+|||||||||||++|+++|++++.|++.++++++. +
T Consensus 48 ~~~~~~~~di~g~~~~k~~l~~~~~~l~~~~~~~~~g~~~~~giLL~GppGtGKT~la~alA~~~~~~~~~i~~~~~~-~ 126 (495)
T TIGR01241 48 EKPKVTFKDVAGIDEAKEELMEIVDFLKNPSKFTKLGAKIPKGVLLVGPPGTGKTLLAKAVAGEAGVPFFSISGSDFV-E 126 (495)
T ss_pred CCCCCCHHHhCCHHHHHHHHHHHHHHHHCHHHHHhcCCCCCCcEEEECCCCCCHHHHHHHHHHHcCCCeeeccHHHHH-H
Confidence 467899999999999999999999999999999999999999999999999999999999999999999999999997 6
Q ss_pred hhcccchhhHHHHHHHHHhcCCeEEEEcCccccccccccccCCCchhhHHHHHHHHhhhcccccCCeEEEEecccchhhc
Q 035561 528 LWVGQSASNVRELFQTARDLAPVIIFVEDFDLFAGVRGQFIHTKQQDHESFINQLLVELDGFEKQDGVVLMATTRNIKQI 607 (979)
Q Consensus 528 ~~vG~~~~~Ir~lF~~A~~~aP~ILfIDEIDaL~~~r~~~~~~~~~~~~~iln~LL~~LDg~~~~~~ViVIATTN~pe~L 607 (979)
.+.|.+.+.++.+|+.|+..+||||||||+|.++++++......+....+++++||.+||++...++++||+|||+|+.|
T Consensus 127 ~~~g~~~~~l~~~f~~a~~~~p~Il~iDEid~l~~~r~~~~~~~~~~~~~~~~~lL~~~d~~~~~~~v~vI~aTn~~~~l 206 (495)
T TIGR01241 127 MFVGVGASRVRDLFEQAKKNAPCIIFIDEIDAVGRQRGAGLGGGNDEREQTLNQLLVEMDGFGTNTGVIVIAATNRPDVL 206 (495)
T ss_pred HHhcccHHHHHHHHHHHHhcCCCEEEEechhhhhhccccCcCCccHHHHHHHHHHHhhhccccCCCCeEEEEecCChhhc
Confidence 78999999999999999999999999999999998876543444566778999999999999888899999999999999
Q ss_pred hhhhhcCCceeeEeccCCCCHHHHHHHHHHHHHhccchhhhhhhhHHHHHHHcCCCCHHHHHHHHHHHhhhhhccCCCCh
Q 035561 608 DEALQRPGRMDRIFNLQKPTQSEREKILRIAAQETMDEELIDLVDWRKVAEKTALLRPIELKLVPVALEGSAFRSKFLDT 687 (979)
Q Consensus 608 DpALlRpgRFd~~I~~~~Pd~eeR~~IL~~~l~~~~~~~l~~dvdL~~LA~~T~GfsgaDL~~Lv~aa~~aa~r~~~~s~ 687 (979)
||+++||||||+.|+++.|+.++|.+|++.++++. ....++++..+|..|.||+|+||.++|+.+...+.+.
T Consensus 207 d~al~r~gRfd~~i~i~~Pd~~~R~~il~~~l~~~---~~~~~~~l~~la~~t~G~sgadl~~l~~eA~~~a~~~----- 278 (495)
T TIGR01241 207 DPALLRPGRFDRQVVVDLPDIKGREEILKVHAKNK---KLAPDVDLKAVARRTPGFSGADLANLLNEAALLAARK----- 278 (495)
T ss_pred CHHHhcCCcceEEEEcCCCCHHHHHHHHHHHHhcC---CCCcchhHHHHHHhCCCCCHHHHHHHHHHHHHHHHHc-----
Confidence 99999999999999999999999999999999875 3346789999999999999999999987543322111
Q ss_pred HHHhhhcchhhhccCCCccccccchhhhhhhhhhhhhcCccccHHHHHHHHHhhhccccccccccccCCCCccccccccc
Q 035561 688 DELMSYCGWFATFSGVVPKWFRKTKIVKKISRMLVDHLGLTLTKEDLQNVVDLMEPYGQISNGIELLTPPLDWTRETKLP 767 (979)
Q Consensus 688 ~ei~~~~d~~aAl~~~~P~~lR~~~llk~~~v~w~DiGGl~vtkedL~eAIe~~~kyg~i~aG~e~~sp~l~~~~eek~~ 767 (979)
++..++.++|++|++. +..|.+.+..++ ++++|++
T Consensus 279 -------------------------------------~~~~i~~~~l~~a~~~------~~~~~~~~~~~~--~~~~~~~ 313 (495)
T TIGR01241 279 -------------------------------------NKTEITMNDIEEAIDR------VIAGPEKKSRVI--SEKEKKL 313 (495)
T ss_pred -------------------------------------CCCCCCHHHHHHHHHH------Hhcccccccccc--cHHHHHH
Confidence 1235788999999985 344555554444 7788999
Q ss_pred hhhhhhhHHHHHhhcCCCCccceEEeecCCcCcceeeeeccccccCCCCCCcccHHHHHHHHHHHhhhHHHHHhhccccc
Q 035561 768 HAVWAAGRGLIALLLPNFDTVDNLWLEPCAWEGIGCTKITKAEKEGSMSGNPESRSYLEKKLVFCFGSYAAAQLLLPFGE 847 (979)
Q Consensus 768 iAyHEAGHALVa~lLp~~dpV~kVtIiPrg~~alG~t~~~~~~~~~~~~~~~~Tk~~L~~~I~vlLgGRaAEElvlgfG~ 847 (979)
+|||||||||+++++++.+|+++|||.|||. ++||+.+.+.. +....|+++++++|+|+|||||||+++ ||+
T Consensus 314 ~A~hEaGhAlv~~~l~~~~~v~~vsi~prg~-~~G~~~~~~~~-----~~~~~t~~~l~~~i~v~LaGraAE~~~--~G~ 385 (495)
T TIGR01241 314 VAYHEAGHALVGLLLKDADPVHKVTIIPRGQ-ALGYTQFLPEE-----DKYLYTKSQLLAQIAVLLGGRAAEEII--FGE 385 (495)
T ss_pred HHHHHHhHHHHHHhcCCCCceEEEEEeecCC-ccceEEecCcc-----ccccCCHHHHHHHHHHHhhHHHHHHHH--hcC
Confidence 9999999999999999999999999999985 78999887643 245789999999999999999999999 899
Q ss_pred ccccChhHHHHHHHHHHHHHHHhCCCCCCCCccccccchh--------hhccCCCChHHHHHHHHHHHHHHHHHHHHHHH
Q 035561 848 ENLLSSSEIKQAQEIATRMVLQYGWGPDDSPAIYYSSNAA--------AAMSMGSNHEYEMATKVEKVYDLAYYKAKEML 919 (979)
Q Consensus 848 ~stGAs~Dl~~AT~iAr~MV~~~GMs~~~g~l~~~~~~~~--------~~~~~s~~~~~~id~EV~kil~~Ay~rAk~IL 919 (979)
.|+||++||++||++|+.||.+||||+.+|++.|...... ....+++.+...++.+|++++++||++|++||
T Consensus 386 ~s~Ga~~Dl~~At~lA~~mv~~~Gm~~~~g~~~~~~~~~~~~l~~~~~~~~~~s~~~~~~id~~v~~lL~~a~~ra~~lL 465 (495)
T TIGR01241 386 VTTGASNDIKQATNIARAMVTEWGMSDKLGPVAYGSDGGDVFLGRGFAKAKEYSEETAREIDEEVKRIIEEAYKRAKQIL 465 (495)
T ss_pred CCCCchHHHHHHHHHHHHHHHHhCCCcccCceeeccCccccccccccccccccCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999988653211 12357778889999999999999999999999
Q ss_pred HHhHHHHHHHHHHHHHhcccCHHHHHHHHh
Q 035561 920 QKNRKVLEKVVEELLEYEILTGKDLERLMD 949 (979)
Q Consensus 920 ~eNr~~L~~LAeaLLEkEtL~~eEi~~Il~ 949 (979)
++||+.|++||++|+++|+|+++||++|++
T Consensus 466 ~~~~~~l~~la~~Ll~~e~L~~~ei~~il~ 495 (495)
T TIGR01241 466 TENRDELELLAKALLEKETITREEIKELLA 495 (495)
T ss_pred HHhHHHHHHHHHHHHHcCeeCHHHHHHHhC
Confidence 999999999999999999999999999984
No 7
>COG1222 RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.2e-51 Score=449.62 Aligned_cols=235 Identities=34% Similarity=0.525 Sum_probs=223.7
Q ss_pred hcccCCCCCCCCcccCcHHHHHHHHHHHHh-hcChhHHHhcCCCCCceeEecCCCCCChHHHHHHHHHHcCCCEEEeech
Q 035561 444 MKRVKNPPIPLKDFASVESMREEINEVVAF-LQNPSAFQEMGARAPRGVLIVGERGTGKTSLALAIAAEARVPVVNVEAQ 522 (979)
Q Consensus 444 l~~v~~~~~~f~DIvGleevke~L~eiV~~-L~~p~~f~~lG~~~P~gVLL~GPPGTGKTtLArAlA~elg~~~i~Is~s 522 (979)
|...+.|.++++||+|+++++++|+|+|+. |++|+.|..+|+.+|+|||||||||||||+||||+|++.++.|+.+.+|
T Consensus 140 M~v~e~PdvtY~dIGGL~~Qi~EirE~VELPL~~PElF~~~GI~PPKGVLLYGPPGTGKTLLAkAVA~~T~AtFIrvvgS 219 (406)
T COG1222 140 MEVEEKPDVTYEDIGGLDEQIQEIREVVELPLKNPELFEELGIDPPKGVLLYGPPGTGKTLLAKAVANQTDATFIRVVGS 219 (406)
T ss_pred eeeccCCCCChhhccCHHHHHHHHHHHhcccccCHHHHHHcCCCCCCceEeeCCCCCcHHHHHHHHHhccCceEEEeccH
Confidence 444578999999999999999999999998 9999999999999999999999999999999999999999999999999
Q ss_pred hhhhhhhcccchhhHHHHHHHHHhcCCeEEEEcCccccccccccccCCCchhhHHHHHHHHhhhcccccCCeEEEEeccc
Q 035561 523 ELEAGLWVGQSASNVRELFQTARDLAPVIIFVEDFDLFAGVRGQFIHTKQQDHESFINQLLVELDGFEKQDGVVLMATTR 602 (979)
Q Consensus 523 dL~~~~~vG~~~~~Ir~lF~~A~~~aP~ILfIDEIDaL~~~r~~~~~~~~~~~~~iln~LL~~LDg~~~~~~ViVIATTN 602 (979)
+|+ .+|+|+++..+|++|..|+.++||||||||||+++.+|.....+++.+.++++-+||++||||....+|-||+|||
T Consensus 220 ElV-qKYiGEGaRlVRelF~lArekaPsIIFiDEIDAIg~kR~d~~t~gDrEVQRTmleLL~qlDGFD~~~nvKVI~ATN 298 (406)
T COG1222 220 ELV-QKYIGEGARLVRELFELAREKAPSIIFIDEIDAIGAKRFDSGTSGDREVQRTMLELLNQLDGFDPRGNVKVIMATN 298 (406)
T ss_pred HHH-HHHhccchHHHHHHHHHHhhcCCeEEEEechhhhhcccccCCCCchHHHHHHHHHHHHhccCCCCCCCeEEEEecC
Confidence 999 7899999999999999999999999999999999999987777788899999999999999999999999999999
Q ss_pred chhhchhhhhcCCceeeEeccCCCCHHHHHHHHHHHHHhccchhhhhhhhHHHHHHHcCCCCHHHHHHHHHHHhhhhhcc
Q 035561 603 NIKQIDEALQRPGRMDRIFNLQKPTQSEREKILRIAAQETMDEELIDLVDWRKVAEKTALLRPIELKLVPVALEGSAFRS 682 (979)
Q Consensus 603 ~pe~LDpALlRpgRFd~~I~~~~Pd~eeR~~IL~~~l~~~~~~~l~~dvdL~~LA~~T~GfsgaDL~~Lv~aa~~aa~r~ 682 (979)
+++.|||||+||||||+.|+||.||.++|.+||+.|.++. .+.+++||+.||+.|+|+|||||+++|..+...|+|.
T Consensus 299 R~D~LDPALLRPGR~DRkIEfplPd~~gR~~Il~IHtrkM---~l~~dvd~e~la~~~~g~sGAdlkaictEAGm~AiR~ 375 (406)
T COG1222 299 RPDILDPALLRPGRFDRKIEFPLPDEEGRAEILKIHTRKM---NLADDVDLELLARLTEGFSGADLKAICTEAGMFAIRE 375 (406)
T ss_pred CccccChhhcCCCcccceeecCCCCHHHHHHHHHHHhhhc---cCccCcCHHHHHHhcCCCchHHHHHHHHHHhHHHHHh
Confidence 9999999999999999999999999999999999999886 6788999999999999999999999998877766653
No 8
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=7.4e-51 Score=462.62 Aligned_cols=324 Identities=26% Similarity=0.413 Sum_probs=282.6
Q ss_pred CCCCCCCCcccCcHHHHHHHHHHHHhhcChhHHHhcCCCCCceeEecCCCCCChHHHHHHHHHHcCCCEEEeechhhhhh
Q 035561 448 KNPPIPLKDFASVESMREEINEVVAFLQNPSAFQEMGARAPRGVLIVGERGTGKTSLALAIAAEARVPVVNVEAQELEAG 527 (979)
Q Consensus 448 ~~~~~~f~DIvGleevke~L~eiV~~L~~p~~f~~lG~~~P~gVLL~GPPGTGKTtLArAlA~elg~~~i~Is~sdL~~~ 527 (979)
..++++|+||+|++....+|.+++..+++|+.|..+|+.+|+|||||||||||||+||+|+|+++++||+.|++.+++ +
T Consensus 183 ~~snv~f~diGG~d~~~~el~~li~~i~~Pe~~~~lGv~PprGvLlHGPPGCGKT~lA~AiAgel~vPf~~isApeiv-S 261 (802)
T KOG0733|consen 183 PESNVSFSDIGGLDKTLAELCELIIHIKHPEVFSSLGVRPPRGVLLHGPPGCGKTSLANAIAGELGVPFLSISAPEIV-S 261 (802)
T ss_pred CCCCcchhhccChHHHHHHHHHHHHHhcCchhHhhcCCCCCCceeeeCCCCccHHHHHHHHhhhcCCceEeecchhhh-c
Confidence 455789999999999999999999999999999999999999999999999999999999999999999999999999 5
Q ss_pred hhcccchhhHHHHHHHHHhcCCeEEEEcCccccccccccccCCCchhhHHHHHHHHhhhcccccC----CeEEEEecccc
Q 035561 528 LWVGQSASNVRELFQTARDLAPVIIFVEDFDLFAGVRGQFIHTKQQDHESFINQLLVELDGFEKQ----DGVVLMATTRN 603 (979)
Q Consensus 528 ~~vG~~~~~Ir~lF~~A~~~aP~ILfIDEIDaL~~~r~~~~~~~~~~~~~iln~LL~~LDg~~~~----~~ViVIATTN~ 603 (979)
.+.|++++++|++|++|+.++|||+||||||+++++|.. ...+.-.+++.|||+.||++... .+|+||||||+
T Consensus 262 GvSGESEkkiRelF~~A~~~aPcivFiDeIDAI~pkRe~---aqreMErRiVaQLlt~mD~l~~~~~~g~~VlVIgATnR 338 (802)
T KOG0733|consen 262 GVSGESEKKIRELFDQAKSNAPCIVFIDEIDAITPKREE---AQREMERRIVAQLLTSMDELSNEKTKGDPVLVIGATNR 338 (802)
T ss_pred ccCcccHHHHHHHHHHHhccCCeEEEeecccccccchhh---HHHHHHHHHHHHHHHhhhcccccccCCCCeEEEecCCC
Confidence 579999999999999999999999999999999999863 23344468999999999998543 67999999999
Q ss_pred hhhchhhhhcCCceeeEeccCCCCHHHHHHHHHHHHHhccchhhhhhhhHHHHHHHcCCCCHHHHHHHHHHHhhhhhccC
Q 035561 604 IKQIDEALQRPGRMDRIFNLQKPTQSEREKILRIAAQETMDEELIDLVDWRKVAEKTALLRPIELKLVPVALEGSAFRSK 683 (979)
Q Consensus 604 pe~LDpALlRpgRFd~~I~~~~Pd~eeR~~IL~~~l~~~~~~~l~~dvdL~~LA~~T~GfsgaDL~~Lv~aa~~aa~r~~ 683 (979)
|+.|||+|+|+||||++|.+..|+..+|.+||+..+++. .+..++|+.+||+.|+||+|+||.+||.++...++++.
T Consensus 339 PDslDpaLRRaGRFdrEI~l~vP~e~aR~~IL~~~~~~l---rl~g~~d~~qlA~lTPGfVGADL~AL~~~Aa~vAikR~ 415 (802)
T KOG0733|consen 339 PDSLDPALRRAGRFDREICLGVPSETAREEILRIICRGL---RLSGDFDFKQLAKLTPGFVGADLMALCREAAFVAIKRI 415 (802)
T ss_pred CcccCHHHhccccccceeeecCCchHHHHHHHHHHHhhC---CCCCCcCHHHHHhcCCCccchhHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999976 45668999999999999999999999988887776641
Q ss_pred C--------------------CChHH-----------------H---------------------hhhcchhhhccCCCc
Q 035561 684 F--------------------LDTDE-----------------L---------------------MSYCGWFATFSGVVP 705 (979)
Q Consensus 684 ~--------------------~s~~e-----------------i---------------------~~~~d~~aAl~~~~P 705 (979)
. .+.++ + +...||..|+..++|
T Consensus 416 ld~~~~p~~~~~~~ed~~~~~~~~d~S~i~~~~~~~~~~~ld~v~~~~i~~~~d~~S~E~~~~L~i~~eDF~~Al~~iQP 495 (802)
T KOG0733|consen 416 LDQSSSPLTKVPISEDSSNKDAEEDQSSIKITSNAERPLELDRVVQDAILNNPDPLSKELLEGLSIKFEDFEEALSKIQP 495 (802)
T ss_pred hhcccCccccCCccccccCCCccchhhhhhcCCcccccccHHHHHHHHHHhCCCCcChHHhccceecHHHHHHHHHhcCc
Confidence 0 00000 0 123389999999999
Q ss_pred cccccchhhhhhhhhhhhhcCccccHHHHHHHHHhhhcccc--------ccccccccCCCCccccccccchhhhhhhHHH
Q 035561 706 KWFRKTKIVKKISRMLVDHLGLTLTKEDLQNVVDLMEPYGQ--------ISNGIELLTPPLDWTRETKLPHAVWAAGRGL 777 (979)
Q Consensus 706 ~~lR~~~llk~~~v~w~DiGGl~vtkedL~eAIe~~~kyg~--------i~aG~e~~sp~l~~~~eek~~iAyHEAGHAL 777 (979)
++.|.. .+.+|+++|+|+|++...+.+|..||.+|.|++. ...|+.+.+||. +|..|
T Consensus 496 SakREG-F~tVPdVtW~dIGaL~~vR~eL~~aI~~PiK~pd~~k~lGi~~PsGvLL~GPPG--------------CGKTL 560 (802)
T KOG0733|consen 496 SAKREG-FATVPDVTWDDIGALEEVRLELNMAILAPIKRPDLFKALGIDAPSGVLLCGPPG--------------CGKTL 560 (802)
T ss_pred chhccc-ceecCCCChhhcccHHHHHHHHHHHHhhhccCHHHHHHhCCCCCCceEEeCCCC--------------ccHHH
Confidence 999876 6889999999999999999999999999887642 367888999988 89999
Q ss_pred HHhhcCCCCccceEEe
Q 035561 778 IALLLPNFDTVDNLWL 793 (979)
Q Consensus 778 Va~lLp~~dpV~kVtI 793 (979)
+|....+-.....++|
T Consensus 561 lAKAVANEag~NFisV 576 (802)
T KOG0733|consen 561 LAKAVANEAGANFISV 576 (802)
T ss_pred HHHHHhhhccCceEee
Confidence 9998766444444443
No 9
>CHL00206 ycf2 Ycf2; Provisional
Probab=100.00 E-value=5.5e-50 Score=498.59 Aligned_cols=316 Identities=13% Similarity=0.120 Sum_probs=254.0
Q ss_pred hHHHhcCCCCCceeEecCCCCCChHHHHHHHHHHcCCCEEEeechhhhhhh-----------------------------
Q 035561 478 SAFQEMGARAPRGVLIVGERGTGKTSLALAIAAEARVPVVNVEAQELEAGL----------------------------- 528 (979)
Q Consensus 478 ~~f~~lG~~~P~gVLL~GPPGTGKTtLArAlA~elg~~~i~Is~sdL~~~~----------------------------- 528 (979)
....++|+.+|+||||+||||||||+||||+|+++++||+.|++++++...
T Consensus 1620 P~slrLGl~pPKGILLiGPPGTGKTlLAKALA~es~VPFIsISgs~fl~~~~~~~~~d~i~iges~~~~~~~~~~~~~~~ 1699 (2281)
T CHL00206 1620 PFSLRLALSPSRGILVIGSIGTGRSYLVKYLATNSYVPFITVFLNKFLDNKPKGFLIDDIDIDDSDDIDDSDDIDRDLDT 1699 (2281)
T ss_pred CHHHHcCCCCCCceEEECCCCCCHHHHHHHHHHhcCCceEEEEHHHHhhcccccccccccccccccccccccccccccch
Confidence 345778999999999999999999999999999999999999999998321
Q ss_pred -------------hcccchhhHHHHHHHHHhcCCeEEEEcCccccccccccccCCCchhhHHHHHHHHhhhcccc---cC
Q 035561 529 -------------WVGQSASNVRELFQTARDLAPVIIFVEDFDLFAGVRGQFIHTKQQDHESFINQLLVELDGFE---KQ 592 (979)
Q Consensus 529 -------------~vG~~~~~Ir~lF~~A~~~aP~ILfIDEIDaL~~~r~~~~~~~~~~~~~iln~LL~~LDg~~---~~ 592 (979)
..++...+++.+|+.|++++||||||||||+|+++. ....++++|+.+||+.. ..
T Consensus 1700 e~~e~~n~~~~~m~~~e~~~rIr~lFelARk~SPCIIFIDEIDaL~~~d---------s~~ltL~qLLneLDg~~~~~s~ 1770 (2281)
T CHL00206 1700 ELLTMMNALTMDMMPKIDRFYITLQFELAKAMSPCIIWIPNIHDLNVNE---------SNYLSLGLLVNSLSRDCERCST 1770 (2281)
T ss_pred hhhhhcchhhhhhhhhhhHHHHHHHHHHHHHCCCeEEEEEchhhcCCCc---------cceehHHHHHHHhccccccCCC
Confidence 112234458999999999999999999999997541 12346899999999863 45
Q ss_pred CeEEEEecccchhhchhhhhcCCceeeEeccCCCCHHHHHHHHHHHHHhccchhhhhhhhHHHHHHHcCCCCHHHHHHHH
Q 035561 593 DGVVLMATTRNIKQIDEALQRPGRMDRIFNLQKPTQSEREKILRIAAQETMDEELIDLVDWRKVAEKTALLRPIELKLVP 672 (979)
Q Consensus 593 ~~ViVIATTN~pe~LDpALlRpgRFd~~I~~~~Pd~eeR~~IL~~~l~~~~~~~l~~dvdL~~LA~~T~GfsgaDL~~Lv 672 (979)
.+|+||||||+|+.|||||+||||||+.|.|+.|+..+|++++..++.........+.+|+..+|+.|+|||||||++||
T Consensus 1771 ~~VIVIAATNRPD~LDPALLRPGRFDR~I~Ir~Pd~p~R~kiL~ILl~tkg~~L~~~~vdl~~LA~~T~GfSGADLanLv 1850 (2281)
T CHL00206 1771 RNILVIASTHIPQKVDPALIAPNKLNTCIKIRRLLIPQQRKHFFTLSYTRGFHLEKKMFHTNGFGSITMGSNARDLVALT 1850 (2281)
T ss_pred CCEEEEEeCCCcccCCHhHcCCCCCCeEEEeCCCCchhHHHHHHHHHhhcCCCCCcccccHHHHHHhCCCCCHHHHHHHH
Confidence 68999999999999999999999999999999999999999998654332111112346899999999999999999999
Q ss_pred HHHhhhhhccCCCChHHHhhhcchhhhccCCCccccccchhhhhhhhhhhhhcCccccHHHHHHHHHhhhcccccccccc
Q 035561 673 VALEGSAFRSKFLDTDELMSYCGWFATFSGVVPKWFRKTKIVKKISRMLVDHLGLTLTKEDLQNVVDLMEPYGQISNGIE 752 (979)
Q Consensus 673 ~aa~~aa~r~~~~s~~ei~~~~d~~aAl~~~~P~~lR~~~llk~~~v~w~DiGGl~vtkedL~eAIe~~~kyg~i~aG~e 752 (979)
++|...++++. ...++.++|..|+++. ..|++
T Consensus 1851 NEAaliAirq~------------------------------------------ks~Id~~~I~~Al~Rq------~~g~~ 1882 (2281)
T CHL00206 1851 NEALSISITQK------------------------------------------KSIIDTNTIRSALHRQ------TWDLR 1882 (2281)
T ss_pred HHHHHHHHHcC------------------------------------------CCccCHHHHHHHHHHH------Hhhhh
Confidence 87766554332 1346678999999863 45665
Q ss_pred ccCCCCccccccccchhhhhhhHHHHHhhcCCCCccceEEeecC-----CcCcceeeeeccccccCCCCCCcccHHHHHH
Q 035561 753 LLTPPLDWTRETKLPHAVWAAGRGLIALLLPNFDTVDNLWLEPC-----AWEGIGCTKITKAEKEGSMSGNPESRSYLEK 827 (979)
Q Consensus 753 ~~sp~l~~~~eek~~iAyHEAGHALVa~lLp~~dpV~kVtIiPr-----g~~alG~t~~~~~~~~~~~~~~~~Tk~~L~~ 827 (979)
.+... .+++ .+||||+||||++.+|++.+||++|||.|+ ++.+.||+++.+.+ ..+++.+++.
T Consensus 1883 ~~~~~----~~~~-~ia~yEiGhAvvq~~L~~~~pv~kISIy~~~~~~r~~~~yl~~wyle~~-------~~mkk~tiL~ 1950 (2281)
T CHL00206 1883 SQVRS----VQDH-GILFYQIGRAVAQNVLLSNCPIDPISIYMKKKSCKEGDSYLYKWYFELG-------TSMKKLTILL 1950 (2281)
T ss_pred hcccC----cchh-hhhhhHHhHHHHHHhccCCCCcceEEEecCCccccCcccceeEeecCCc-------ccCCHHHHHH
Confidence 44322 2223 379999999999999999999999999642 34566999988631 5789999999
Q ss_pred HHHHHhhhHHHHHhhcccccccccChhHHHHHHHHHHHHHHHhCCCCCC
Q 035561 828 KLVFCFGSYAAAQLLLPFGEENLLSSSEIKQAQEIATRMVLQYGWGPDD 876 (979)
Q Consensus 828 ~I~vlLgGRaAEElvlgfG~~stGAs~Dl~~AT~iAr~MV~~~GMs~~~ 876 (979)
+|++||||||||++. |+..+ .|+.||+.|||++.+
T Consensus 1951 ~Il~cLAGraAedlw--f~~~~------------~~~n~It~yg~vEnD 1985 (2281)
T CHL00206 1951 YLLSCSAGSVAQDLW--SLPGP------------DEKNGITSYGLVEND 1985 (2281)
T ss_pred HHHHHhhhhhhhhhc--cCcch------------hhhcCcccccchhhh
Confidence 999999999999999 54433 588999999999873
No 10
>KOG0730 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.5e-47 Score=441.96 Aligned_cols=247 Identities=32% Similarity=0.525 Sum_probs=225.3
Q ss_pred cCCCCCCCCcccCcHHHHHHHHHHHHh-hcChhHHHhcCCCCCceeEecCCCCCChHHHHHHHHHHcCCCEEEeechhhh
Q 035561 447 VKNPPIPLKDFASVESMREEINEVVAF-LQNPSAFQEMGARAPRGVLIVGERGTGKTSLALAIAAEARVPVVNVEAQELE 525 (979)
Q Consensus 447 v~~~~~~f~DIvGleevke~L~eiV~~-L~~p~~f~~lG~~~P~gVLL~GPPGTGKTtLArAlA~elg~~~i~Is~sdL~ 525 (979)
++.|+++|+||+|++++|.+|++.|.+ +++|..|.++|+.+|+|||||||||||||++|||+|++++.+|++|.+.+++
T Consensus 426 ve~p~v~W~dIGGlE~lK~elq~~V~~p~~~pe~F~r~Gi~ppkGVLlyGPPGC~KT~lAkalAne~~~nFlsvkgpEL~ 505 (693)
T KOG0730|consen 426 VEMPNVSWDDIGGLEELKRELQQAVEWPLKHPEKFARFGISPPKGVLLYGPPGCGKTLLAKALANEAGMNFLSVKGPELF 505 (693)
T ss_pred ccCCCCChhhccCHHHHHHHHHHHHhhhhhchHHHHHhcCCCCceEEEECCCCcchHHHHHHHhhhhcCCeeeccCHHHH
Confidence 578899999999999999999999998 9999999999999999999999999999999999999999999999999999
Q ss_pred hhhhcccchhhHHHHHHHHHhcCCeEEEEcCccccccccccccCCCchhhHHHHHHHHhhhcccccCCeEEEEecccchh
Q 035561 526 AGLWVGQSASNVRELFQTARDLAPVIIFVEDFDLFAGVRGQFIHTKQQDHESFINQLLVELDGFEKQDGVVLMATTRNIK 605 (979)
Q Consensus 526 ~~~~vG~~~~~Ir~lF~~A~~~aP~ILfIDEIDaL~~~r~~~~~~~~~~~~~iln~LL~~LDg~~~~~~ViVIATTN~pe 605 (979)
++|+|+++..+|++|++|+..+|||||+||||+++++|++. .+....+++++||++|||+....+|+|||+||+|+
T Consensus 506 -sk~vGeSEr~ir~iF~kAR~~aP~IiFfDEiDsi~~~R~g~---~~~v~~RVlsqLLtEmDG~e~~k~V~ViAATNRpd 581 (693)
T KOG0730|consen 506 -SKYVGESERAIREVFRKARQVAPCIIFFDEIDALAGSRGGS---SSGVTDRVLSQLLTEMDGLEALKNVLVIAATNRPD 581 (693)
T ss_pred -HHhcCchHHHHHHHHHHHhhcCCeEEehhhHHhHhhccCCC---ccchHHHHHHHHHHHcccccccCcEEEEeccCChh
Confidence 89999999999999999999999999999999999999742 23667899999999999999999999999999999
Q ss_pred hchhhhhcCCceeeEeccCCCCHHHHHHHHHHHHHhccchhhhhhhhHHHHHHHcCCCCHHHHHHHHHHHhhhhhccCCC
Q 035561 606 QIDEALQRPGRMDRIFNLQKPTQSEREKILRIAAQETMDEELIDLVDWRKVAEKTALLRPIELKLVPVALEGSAFRSKFL 685 (979)
Q Consensus 606 ~LDpALlRpgRFd~~I~~~~Pd~eeR~~IL~~~l~~~~~~~l~~dvdL~~LA~~T~GfsgaDL~~Lv~aa~~aa~r~~~~ 685 (979)
.||+||+||||||+.|+||+||.+.|.+||+.++++. +..+++|+.+||+.|+||||+||.++|+.+...+++...-
T Consensus 582 ~ID~ALlRPGRlD~iiyVplPD~~aR~~Ilk~~~kkm---p~~~~vdl~~La~~T~g~SGAel~~lCq~A~~~a~~e~i~ 658 (693)
T KOG0730|consen 582 MIDPALLRPGRLDRIIYVPLPDLEARLEILKQCAKKM---PFSEDVDLEELAQATEGYSGAEIVAVCQEAALLALRESIE 658 (693)
T ss_pred hcCHHHcCCcccceeEeecCccHHHHHHHHHHHHhcC---CCCccccHHHHHHHhccCChHHHHHHHHHHHHHHHHHhcc
Confidence 9999999999999999999999999999999999986 6778899999999999999999999999988888765421
Q ss_pred ChHHHhhhcchhhhccC
Q 035561 686 DTDELMSYCGWFATFSG 702 (979)
Q Consensus 686 s~~ei~~~~d~~aAl~~ 702 (979)
.......+|..|++.
T Consensus 659 --a~~i~~~hf~~al~~ 673 (693)
T KOG0730|consen 659 --ATEITWQHFEEALKA 673 (693)
T ss_pred --cccccHHHHHHHHHh
Confidence 112333455555443
No 11
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=4.9e-47 Score=431.53 Aligned_cols=231 Identities=34% Similarity=0.529 Sum_probs=217.0
Q ss_pred CCCCCCCCcccCcHHHHHHHHHHHHh-hcChhHHHhcCCCCCceeEecCCCCCChHHHHHHHHHHcCCCEEEeechhhhh
Q 035561 448 KNPPIPLKDFASVESMREEINEVVAF-LQNPSAFQEMGARAPRGVLIVGERGTGKTSLALAIAAEARVPVVNVEAQELEA 526 (979)
Q Consensus 448 ~~~~~~f~DIvGleevke~L~eiV~~-L~~p~~f~~lG~~~P~gVLL~GPPGTGKTtLArAlA~elg~~~i~Is~sdL~~ 526 (979)
..|.++|+||+|+++++.+|...|.+ .++|+.|+++|+..|.|||||||||||||+||||+|+|+|.+|++|.+.+|+
T Consensus 504 tVPdVtW~dIGaL~~vR~eL~~aI~~PiK~pd~~k~lGi~~PsGvLL~GPPGCGKTLlAKAVANEag~NFisVKGPELl- 582 (802)
T KOG0733|consen 504 TVPDVTWDDIGALEEVRLELNMAILAPIKRPDLFKALGIDAPSGVLLCGPPGCGKTLLAKAVANEAGANFISVKGPELL- 582 (802)
T ss_pred ecCCCChhhcccHHHHHHHHHHHHhhhccCHHHHHHhCCCCCCceEEeCCCCccHHHHHHHHhhhccCceEeecCHHHH-
Confidence 45889999999999999999988777 9999999999999999999999999999999999999999999999999999
Q ss_pred hhhcccchhhHHHHHHHHHhcCCeEEEEcCccccccccccccCCCchhhHHHHHHHHhhhcccccCCeEEEEecccchhh
Q 035561 527 GLWVGQSASNVRELFQTARDLAPVIIFVEDFDLFAGVRGQFIHTKQQDHESFINQLLVELDGFEKQDGVVLMATTRNIKQ 606 (979)
Q Consensus 527 ~~~vG~~~~~Ir~lF~~A~~~aP~ILfIDEIDaL~~~r~~~~~~~~~~~~~iln~LL~~LDg~~~~~~ViVIATTN~pe~ 606 (979)
++|+|+++..+|.+|..|+.++|||||+||+|+|++.|+. +.+....+++|+||++|||++...+|.||||||+|+.
T Consensus 583 NkYVGESErAVR~vFqRAR~saPCVIFFDEiDaL~p~R~~---~~s~~s~RvvNqLLtElDGl~~R~gV~viaATNRPDi 659 (802)
T KOG0733|consen 583 NKYVGESERAVRQVFQRARASAPCVIFFDEIDALVPRRSD---EGSSVSSRVVNQLLTELDGLEERRGVYVIAATNRPDI 659 (802)
T ss_pred HHHhhhHHHHHHHHHHHhhcCCCeEEEecchhhcCcccCC---CCchhHHHHHHHHHHHhcccccccceEEEeecCCCcc
Confidence 8999999999999999999999999999999999999985 3456678999999999999999999999999999999
Q ss_pred chhhhhcCCceeeEeccCCCCHHHHHHHHHHHHHhccchhhhhhhhHHHHHHHcC--CCCHHHHHHHHHHHhhhhhccC
Q 035561 607 IDEALQRPGRMDRIFNLQKPTQSEREKILRIAAQETMDEELIDLVDWRKVAEKTA--LLRPIELKLVPVALEGSAFRSK 683 (979)
Q Consensus 607 LDpALlRpgRFd~~I~~~~Pd~eeR~~IL~~~l~~~~~~~l~~dvdL~~LA~~T~--GfsgaDL~~Lv~aa~~aa~r~~ 683 (979)
||||++||||||..++|+.|+.++|.+||+.+.++. ..++.+++||+.||+.+. ||||+||..||+.+...++++.
T Consensus 660 IDpAiLRPGRlDk~LyV~lPn~~eR~~ILK~~tkn~-k~pl~~dVdl~eia~~~~c~gftGADLaaLvreAsi~AL~~~ 737 (802)
T KOG0733|consen 660 IDPAILRPGRLDKLLYVGLPNAEERVAILKTITKNT-KPPLSSDVDLDEIARNTKCEGFTGADLAALVREASILALRES 737 (802)
T ss_pred cchhhcCCCccCceeeecCCCHHHHHHHHHHHhccC-CCCCCcccCHHHHhhcccccCCchhhHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999963 347899999999998776 9999999999998888877753
No 12
>KOG0736 consensus Peroxisome assembly factor 2 containing the AAA+-type ATPase domain [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.2e-42 Score=403.95 Aligned_cols=254 Identities=29% Similarity=0.466 Sum_probs=223.1
Q ss_pred CCCCCCCCcccCcHHHHHHHHHHHHh-hcChhHHHhcCCCCCceeEecCCCCCChHHHHHHHHHHcCCCEEEeechhhhh
Q 035561 448 KNPPIPLKDFASVESMREEINEVVAF-LQNPSAFQEMGARAPRGVLIVGERGTGKTSLALAIAAEARVPVVNVEAQELEA 526 (979)
Q Consensus 448 ~~~~~~f~DIvGleevke~L~eiV~~-L~~p~~f~~lG~~~P~gVLL~GPPGTGKTtLArAlA~elg~~~i~Is~sdL~~ 526 (979)
+-|+++|+||+|++++|.++.+.+.. |++|+.|. .|+++..|||||||||||||++|||+|.|++..|++|.+.++.
T Consensus 665 KIPnV~WdDVGGLeevK~eIldTIqlPL~hpeLfs-sglrkRSGILLYGPPGTGKTLlAKAVATEcsL~FlSVKGPELL- 742 (953)
T KOG0736|consen 665 KIPNVSWDDVGGLEEVKTEILDTIQLPLKHPELFS-SGLRKRSGILLYGPPGTGKTLLAKAVATECSLNFLSVKGPELL- 742 (953)
T ss_pred CCCccchhcccCHHHHHHHHHHHhcCcccChhhhh-ccccccceeEEECCCCCchHHHHHHHHhhceeeEEeecCHHHH-
Confidence 67899999999999999999999987 99999997 4889899999999999999999999999999999999999999
Q ss_pred hhhcccchhhHHHHHHHHHhcCCeEEEEcCccccccccccccCCCchhhHHHHHHHHhhhcccc--cCCeEEEEecccch
Q 035561 527 GLWVGQSASNVRELFQTARDLAPVIIFVEDFDLFAGVRGQFIHTKQQDHESFINQLLVELDGFE--KQDGVVLMATTRNI 604 (979)
Q Consensus 527 ~~~vG~~~~~Ir~lF~~A~~~aP~ILfIDEIDaL~~~r~~~~~~~~~~~~~iln~LL~~LDg~~--~~~~ViVIATTN~p 604 (979)
++|+|++++++|++|++|+..+|||||+||+|+|+|+||.. +.+...+.++++|||.+|||+. ....|+||||||+|
T Consensus 743 NMYVGqSE~NVR~VFerAR~A~PCVIFFDELDSlAP~RG~s-GDSGGVMDRVVSQLLAELDgls~~~s~~VFViGATNRP 821 (953)
T KOG0736|consen 743 NMYVGQSEENVREVFERARSAAPCVIFFDELDSLAPNRGRS-GDSGGVMDRVVSQLLAELDGLSDSSSQDVFVIGATNRP 821 (953)
T ss_pred HHHhcchHHHHHHHHHHhhccCCeEEEeccccccCccCCCC-CCccccHHHHHHHHHHHhhcccCCCCCceEEEecCCCc
Confidence 89999999999999999999999999999999999999864 3344568999999999999997 45689999999999
Q ss_pred hhchhhhhcCCceeeEeccCCC-CHHHHHHHHHHHHHhccchhhhhhhhHHHHHHHcC-CCCHHHHHHHHHHHhhhhhcc
Q 035561 605 KQIDEALQRPGRMDRIFNLQKP-TQSEREKILRIAAQETMDEELIDLVDWRKVAEKTA-LLRPIELKLVPVALEGSAFRS 682 (979)
Q Consensus 605 e~LDpALlRpgRFd~~I~~~~P-d~eeR~~IL~~~l~~~~~~~l~~dvdL~~LA~~T~-GfsgaDL~~Lv~aa~~aa~r~ 682 (979)
+.|||||+||||||.-++++++ |.+.+..||+...++. .+.++||+.++|++++ .|||||+-.+|..+-.+|+++
T Consensus 822 DLLDpALLRPGRFDKLvyvG~~~d~esk~~vL~AlTrkF---kLdedVdL~eiAk~cp~~~TGADlYsLCSdA~l~AikR 898 (953)
T KOG0736|consen 822 DLLDPALLRPGRFDKLVYVGPNEDAESKLRVLEALTRKF---KLDEDVDLVEIAKKCPPNMTGADLYSLCSDAMLAAIKR 898 (953)
T ss_pred cccChhhcCCCccceeEEecCCccHHHHHHHHHHHHHHc---cCCCCcCHHHHHhhCCcCCchhHHHHHHHHHHHHHHHH
Confidence 9999999999999999999988 5667889999999886 6788999999999986 799999999998887777765
Q ss_pred CCCC-------------hHHHhhhcchhhhccCCCccc
Q 035561 683 KFLD-------------TDELMSYCGWFATFSGVVPKW 707 (979)
Q Consensus 683 ~~~s-------------~~ei~~~~d~~aAl~~~~P~~ 707 (979)
..-. .+-..++.||..+.+.++|+-
T Consensus 899 ~i~~ie~g~~~~~e~~~~~v~V~~eDflks~~~l~PSv 936 (953)
T KOG0736|consen 899 TIHDIESGTISEEEQESSSVRVTMEDFLKSAKRLQPSV 936 (953)
T ss_pred HHHHhhhccccccccCCceEEEEHHHHHHHHHhcCCcc
Confidence 3211 111344556666666666643
No 13
>PF01434 Peptidase_M41: Peptidase family M41 This is family M41 in the peptidase classification. ; InterPro: IPR000642 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. This group of metallopeptidases belong to MEROPS peptidase family M41 (FtsH endopeptidase family, clan MA(E)). The predicted active site residues for members of this family and thermolysin, the type example for clan MA, occur in the motif HEXXH. The peptidase M41 family belong to a larger family of zinc metalloproteases. This family includes the cell division protein FtsH, and the yeast mitochondrial respiratory chain complexes assembly protein, which is a putative ATP-dependent protease required for assembly of the mitochondrial respiratory chain and ATPase complexes. FtsH is an integral membrane protein, which seems to act as an ATP-dependent zinc metallopeptidase that binds one zinc ion.; GO: 0004222 metalloendopeptidase activity, 0005524 ATP binding, 0006508 proteolysis; PDB: 4EIW_C 2DHR_E 1IY1_A 1IY2_A 1IY0_A 1IXZ_A 2CE7_F 2CEA_F 3KDS_E 2QZ4_A ....
Probab=100.00 E-value=3.8e-42 Score=362.84 Aligned_cols=204 Identities=32% Similarity=0.456 Sum_probs=172.0
Q ss_pred cHHHHHHHHHhhhccccccccccccCCCCccccccccchhhhhhhHHHHHhhcCCCCccceEEeecCCcCcceeeeeccc
Q 035561 730 TKEDLQNVVDLMEPYGQISNGIELLTPPLDWTRETKLPHAVWAAGRGLIALLLPNFDTVDNLWLEPCAWEGIGCTKITKA 809 (979)
Q Consensus 730 tkedL~eAIe~~~kyg~i~aG~e~~sp~l~~~~eek~~iAyHEAGHALVa~lLp~~dpV~kVtIiPrg~~alG~t~~~~~ 809 (979)
|++||.+|+++ +..|.+++++.+ ++++|+++||||||||||++++|+.+||++|||+|||. ++||+.+.+.
T Consensus 1 ~~~d~~~a~dr------v~~G~~~~~~~~--~~~~~~~~A~HEAGhAvva~~l~~~~~v~~vsi~prg~-~~G~~~~~~~ 71 (213)
T PF01434_consen 1 TMEDIEEAIDR------VLMGPEKKSRKL--SEEEKRRIAYHEAGHAVVAYLLPPADPVSKVSIVPRGS-ALGFTQFTPD 71 (213)
T ss_dssp -HHHHHHHHHH------HHCCSCCTTS-----HHHHHHHHHHHHHHHHHHHHSSS---EEEEESSTTCC-CCHCCEECHH
T ss_pred CHHHHHHHHHH------HhcCcCcCCCCC--CHHHHHHHHHHHHHHHHHHHHhcccccEEEEEEecCCC-cceeEEeccc
Confidence 57899999996 678998877765 88999999999999999999999999999999999996 8899999775
Q ss_pred cccCCCCCCcccHHHHHHHHHHHhhhHHHHHhhcccccccccChhHHHHHHHHHHHHHHHhCCCCCCCCccccccchh--
Q 035561 810 EKEGSMSGNPESRSYLEKKLVFCFGSYAAAQLLLPFGEENLLSSSEIKQAQEIATRMVLQYGWGPDDSPAIYYSSNAA-- 887 (979)
Q Consensus 810 ~~~~~~~~~~~Tk~~L~~~I~vlLgGRaAEElvlgfG~~stGAs~Dl~~AT~iAr~MV~~~GMs~~~g~l~~~~~~~~-- 887 (979)
+ +....||++++++|+|+|||||||+++||.+++|+|+++||++||+||+.||.+||||+.+|++.|...+..
T Consensus 72 ~-----~~~~~t~~~l~~~i~v~LaGraAEe~~~g~~~~stGa~~DL~~At~iA~~mv~~~Gm~~~~g~~~~~~~~~~~~ 146 (213)
T PF01434_consen 72 E-----DRYIRTRSYLEDRICVLLAGRAAEELFFGEDNVSTGASSDLQQATEIARKMVASYGMGDSLGLLSYSPNDDDEV 146 (213)
T ss_dssp T-----T-SS-BHHHHHHHHHHHHHHHHHHHHHHSCCS-BGGGHHHHHHHHHHHHHHHHTST-TTTTTSS-SEEEE-S-S
T ss_pred h-----hcccccHHHHHhhHHHHHHHHHHHHhhcCcceecccchhHHHHHHHHHHHHHHHhCCCCCCceeeeeccccccc
Confidence 3 234589999999999999999999999544499999999999999999999999999999999887664431
Q ss_pred -------hhccCCCChHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhcccCHHHHHHH
Q 035561 888 -------AAMSMGSNHEYEMATKVEKVYDLAYYKAKEMLQKNRKVLEKVVEELLEYEILTGKDLERL 947 (979)
Q Consensus 888 -------~~~~~s~~~~~~id~EV~kil~~Ay~rAk~IL~eNr~~L~~LAeaLLEkEtL~~eEi~~I 947 (979)
....+|+++...++.+|+++|+.||++|++||++||+.|++||++|+|+++|+++||++|
T Consensus 147 ~~~~~~~~~~~~s~~~~~~i~~ev~~lL~~a~~~a~~iL~~~r~~l~~la~~Lle~~~L~~~ei~~I 213 (213)
T PF01434_consen 147 FLGREWNSRRPMSEETRALIDREVRKLLEEAYARAKEILEENREALEALAEALLEKETLSGEEIEEI 213 (213)
T ss_dssp SS-E---EEESS-HHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHSEEEHHHHHHH
T ss_pred cccccccccCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhCeeCHHHHhhC
Confidence 123467778889999999999999999999999999999999999999999999999986
No 14
>KOG0738 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=3.1e-41 Score=369.56 Aligned_cols=227 Identities=33% Similarity=0.509 Sum_probs=209.8
Q ss_pred cCCCCCCCCcccCcHHHHHHHHHHHHh-hcChhHHHhcCCCCC-ceeEecCCCCCChHHHHHHHHHHcCCCEEEeechhh
Q 035561 447 VKNPPIPLKDFASVESMREEINEVVAF-LQNPSAFQEMGARAP-RGVLIVGERGTGKTSLALAIAAEARVPVVNVEAQEL 524 (979)
Q Consensus 447 v~~~~~~f~DIvGleevke~L~eiV~~-L~~p~~f~~lG~~~P-~gVLL~GPPGTGKTtLArAlA~elg~~~i~Is~sdL 524 (979)
..+|+++|+||+|++++|+-|+|.|.. +..|+.|+ |++.| +|||++||||||||+||||+|.|++..||.|+.+.+
T Consensus 204 ~~np~ikW~DIagl~~AK~lL~EAVvlPi~mPe~F~--GirrPWkgvLm~GPPGTGKTlLAKAvATEc~tTFFNVSsstl 281 (491)
T KOG0738|consen 204 QRNPNIKWDDIAGLHEAKKLLKEAVVLPIWMPEFFK--GIRRPWKGVLMVGPPGTGKTLLAKAVATECGTTFFNVSSSTL 281 (491)
T ss_pred ccCCCcChHhhcchHHHHHHHHHHHhhhhhhHHHHh--hcccccceeeeeCCCCCcHHHHHHHHHHhhcCeEEEechhhh
Confidence 367889999999999999999997765 89999998 66666 999999999999999999999999999999999999
Q ss_pred hhhhhcccchhhHHHHHHHHHhcCCeEEEEcCccccccccccccCCCchhhHHHHHHHHhhhcccccC----CeEEEEec
Q 035561 525 EAGLWVGQSASNVRELFQTARDLAPVIIFVEDFDLFAGVRGQFIHTKQQDHESFINQLLVELDGFEKQ----DGVVLMAT 600 (979)
Q Consensus 525 ~~~~~vG~~~~~Ir~lF~~A~~~aP~ILfIDEIDaL~~~r~~~~~~~~~~~~~iln~LL~~LDg~~~~----~~ViVIAT 600 (979)
. ++|-|++++.+|-+|+.|+.++|++|||||||+|+.+||. .+.++...++.+.||.+|||++.. ..|+|+|+
T Consensus 282 t-SKwRGeSEKlvRlLFemARfyAPStIFiDEIDslcs~RG~--s~EHEaSRRvKsELLvQmDG~~~t~e~~k~VmVLAA 358 (491)
T KOG0738|consen 282 T-SKWRGESEKLVRLLFEMARFYAPSTIFIDEIDSLCSQRGG--SSEHEASRRVKSELLVQMDGVQGTLENSKVVMVLAA 358 (491)
T ss_pred h-hhhccchHHHHHHHHHHHHHhCCceeehhhHHHHHhcCCC--ccchhHHHHHHHHHHHHhhccccccccceeEEEEec
Confidence 8 8999999999999999999999999999999999999986 456777789999999999998543 33999999
Q ss_pred ccchhhchhhhhcCCceeeEeccCCCCHHHHHHHHHHHHHhccchhhhhhhhHHHHHHHcCCCCHHHHHHHHHHHhhhhh
Q 035561 601 TRNIKQIDEALQRPGRMDRIFNLQKPTQSEREKILRIAAQETMDEELIDLVDWRKVAEKTALLRPIELKLVPVALEGSAF 680 (979)
Q Consensus 601 TN~pe~LDpALlRpgRFd~~I~~~~Pd~eeR~~IL~~~l~~~~~~~l~~dvdL~~LA~~T~GfsgaDL~~Lv~aa~~aa~ 680 (979)
||.|++||.||+| ||...|++|.||.++|..+++..++.. +..++++++.||++++||||+||.++|+.+...++
T Consensus 359 TN~PWdiDEAlrR--RlEKRIyIPLP~~~~R~~Li~~~l~~~---~~~~~~~~~~lae~~eGySGaDI~nvCreAsm~~m 433 (491)
T KOG0738|consen 359 TNFPWDIDEALRR--RLEKRIYIPLPDAEARSALIKILLRSV---ELDDPVNLEDLAERSEGYSGADITNVCREASMMAM 433 (491)
T ss_pred cCCCcchHHHHHH--HHhhheeeeCCCHHHHHHHHHHhhccc---cCCCCccHHHHHHHhcCCChHHHHHHHHHHHHHHH
Confidence 9999999999999 999999999999999999999999876 67889999999999999999999999999998888
Q ss_pred ccC
Q 035561 681 RSK 683 (979)
Q Consensus 681 r~~ 683 (979)
|+.
T Consensus 434 RR~ 436 (491)
T KOG0738|consen 434 RRK 436 (491)
T ss_pred HHH
Confidence 853
No 15
>KOG0730 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=9.8e-41 Score=385.78 Aligned_cols=310 Identities=29% Similarity=0.415 Sum_probs=280.7
Q ss_pred CCCCCCcccCcHHHHHHHHHHHHh-hcChhHHHhcCCCCCceeEecCCCCCChHHHHHHHHHHcCCCEEEeechhhhhhh
Q 035561 450 PPIPLKDFASVESMREEINEVVAF-LQNPSAFQEMGARAPRGVLIVGERGTGKTSLALAIAAEARVPVVNVEAQELEAGL 528 (979)
Q Consensus 450 ~~~~f~DIvGleevke~L~eiV~~-L~~p~~f~~lG~~~P~gVLL~GPPGTGKTtLArAlA~elg~~~i~Is~sdL~~~~ 528 (979)
+++. ++++|+......+++.+.+ +.++..|...|.++|+|+|+|||||||||.+++++|++.++.++.+++++++ .+
T Consensus 180 ~~~~-~~~gg~~~~~~~i~e~v~~pl~~~~~~~s~g~~~prg~Ll~gppg~Gkt~l~~aVa~e~~a~~~~i~~peli-~k 257 (693)
T KOG0730|consen 180 PEVG-DDIGGLKRQLSVIRELVELPLRHPALFKSIGIKPPRGLLLYGPPGTGKTFLVRAVANEYGAFLFLINGPELI-SK 257 (693)
T ss_pred cccc-cccchhHHHHHHHHHHHHhhhcchhhhhhcCCCCCCCccccCCCCCChHHHHHHHHHHhCceeEecccHHHH-Hh
Confidence 5566 8999999999999999998 9999999999999999999999999999999999999999999999999998 77
Q ss_pred hcccchhhHHHHHHHHHhcC-CeEEEEcCccccccccccccCCCchhhHHHHHHHHhhhcccccCCeEEEEecccchhhc
Q 035561 529 WVGQSASNVRELFQTARDLA-PVIIFVEDFDLFAGVRGQFIHTKQQDHESFINQLLVELDGFEKQDGVVLMATTRNIKQI 607 (979)
Q Consensus 529 ~vG~~~~~Ir~lF~~A~~~a-P~ILfIDEIDaL~~~r~~~~~~~~~~~~~iln~LL~~LDg~~~~~~ViVIATTN~pe~L 607 (979)
+.|++++.+|..|+.|.+++ |+|+||||+|+++++|... .....++..+|++.||+......++|++|||+|+.|
T Consensus 258 ~~gEte~~LR~~f~~a~k~~~psii~IdEld~l~p~r~~~----~~~e~Rv~sqlltL~dg~~~~~~vivl~atnrp~sl 333 (693)
T KOG0730|consen 258 FPGETESNLRKAFAEALKFQVPSIIFIDELDALCPKREGA----DDVESRVVSQLLTLLDGLKPDAKVIVLAATNRPDSL 333 (693)
T ss_pred cccchHHHHHHHHHHHhccCCCeeEeHHhHhhhCCccccc----chHHHHHHHHHHHHHhhCcCcCcEEEEEecCCcccc
Confidence 89999999999999999999 9999999999999988642 224678999999999999988899999999999999
Q ss_pred hhhhhcCCceeeEeccCCCCHHHHHHHHHHHHHhccchhhhhhhhHHHHHHHcCCCCHHHHHHHHHHHhhhhhccCCCCh
Q 035561 608 DEALQRPGRMDRIFNLQKPTQSEREKILRIAAQETMDEELIDLVDWRKVAEKTALLRPIELKLVPVALEGSAFRSKFLDT 687 (979)
Q Consensus 608 DpALlRpgRFd~~I~~~~Pd~eeR~~IL~~~l~~~~~~~l~~dvdL~~LA~~T~GfsgaDL~~Lv~aa~~aa~r~~~~s~ 687 (979)
||+++| ||||+.+.+..|+..+|.+|++.+.++. +..+++++..+|..|+||+|+||..+|+.+...+.++
T Consensus 334 d~alRR-gRfd~ev~IgiP~~~~RldIl~~l~k~~---~~~~~~~l~~iA~~thGyvGaDL~~l~~ea~~~~~r~----- 404 (693)
T KOG0730|consen 334 DPALRR-GRFDREVEIGIPGSDGRLDILRVLTKKM---NLLSDVDLEDIAVSTHGYVGADLAALCREASLQATRR----- 404 (693)
T ss_pred Chhhhc-CCCcceeeecCCCchhHHHHHHHHHHhc---CCcchhhHHHHHHHccchhHHHHHHHHHHHHHHHhhh-----
Confidence 999999 9999999999999999999999999886 4457899999999999999999999999888877765
Q ss_pred HHHhhhcchhhhccCCCccccccchhhhhhhhhhhhhcCccccHHHHHHHHHhhhcc-------c-cccccccccCCCCc
Q 035561 688 DELMSYCGWFATFSGVVPKWFRKTKIVKKISRMLVDHLGLTLTKEDLQNVVDLMEPY-------G-QISNGIELLTPPLD 759 (979)
Q Consensus 688 ~ei~~~~d~~aAl~~~~P~~lR~~~llk~~~v~w~DiGGl~vtkedL~eAIe~~~ky-------g-~i~aG~e~~sp~l~ 759 (979)
+..+|..|+.++.|+++|.+. ...+++.|+||||++..|.+|+++|+||.++ | ....|+.+++||.
T Consensus 405 ----~~~~~~~A~~~i~psa~Re~~-ve~p~v~W~dIGGlE~lK~elq~~V~~p~~~pe~F~r~Gi~ppkGVLlyGPPG- 478 (693)
T KOG0730|consen 405 ----TLEIFQEALMGIRPSALREIL-VEMPNVSWDDIGGLEELKRELQQAVEWPLKHPEKFARFGISPPKGVLLYGPPG- 478 (693)
T ss_pred ----hHHHHHHHHhcCCchhhhhee-ccCCCCChhhccCHHHHHHHHHHHHhhhhhchHHHHHhcCCCCceEEEECCCC-
Confidence 556788999999999999986 8899999999999999999999999997654 4 4577999999998
Q ss_pred cccccccchhhhhhhHHHHHhhcCCCCccceEEe
Q 035561 760 WTRETKLPHAVWAAGRGLIALLLPNFDTVDNLWL 793 (979)
Q Consensus 760 ~~~eek~~iAyHEAGHALVa~lLp~~dpV~kVtI 793 (979)
+|..++|..+.+......++|
T Consensus 479 -------------C~KT~lAkalAne~~~nFlsv 499 (693)
T KOG0730|consen 479 -------------CGKTLLAKALANEAGMNFLSV 499 (693)
T ss_pred -------------cchHHHHHHHhhhhcCCeeec
Confidence 688888888876555555554
No 16
>KOG0728 consensus 26S proteasome regulatory complex, ATPase RPT6 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.4e-40 Score=345.18 Aligned_cols=236 Identities=32% Similarity=0.497 Sum_probs=223.5
Q ss_pred hcccCCCCCCCCcccCcHHHHHHHHHHHHh-hcChhHHHhcCCCCCceeEecCCCCCChHHHHHHHHHHcCCCEEEeech
Q 035561 444 MKRVKNPPIPLKDFASVESMREEINEVVAF-LQNPSAFQEMGARAPRGVLIVGERGTGKTSLALAIAAEARVPVVNVEAQ 522 (979)
Q Consensus 444 l~~v~~~~~~f~DIvGleevke~L~eiV~~-L~~p~~f~~lG~~~P~gVLL~GPPGTGKTtLArAlA~elg~~~i~Is~s 522 (979)
+...+.|..+++-++|++...++++++++. .++|+.|..+|+.-|+|+|||||||||||++|+++|....+.|+.++++
T Consensus 136 MmVeKvPDStYeMiGgLd~QIkeIkEVIeLPvKHPELF~aLGIaQPKGvlLygppgtGktLlaraVahht~c~firvsgs 215 (404)
T KOG0728|consen 136 MMVEKVPDSTYEMIGGLDKQIKEIKEVIELPVKHPELFEALGIAQPKGVLLYGPPGTGKTLLARAVAHHTDCTFIRVSGS 215 (404)
T ss_pred HhhhhCCccHHHHhccHHHHHHHHHHHHhccccCHHHHHhcCCCCCcceEEecCCCCchhHHHHHHHhhcceEEEEechH
Confidence 344467888999999999999999999998 9999999999999999999999999999999999999999999999999
Q ss_pred hhhhhhhcccchhhHHHHHHHHHhcCCeEEEEcCccccccccccccCCCchhhHHHHHHHHhhhcccccCCeEEEEeccc
Q 035561 523 ELEAGLWVGQSASNVRELFQTARDLAPVIIFVEDFDLFAGVRGQFIHTKQQDHESFINQLLVELDGFEKQDGVVLMATTR 602 (979)
Q Consensus 523 dL~~~~~vG~~~~~Ir~lF~~A~~~aP~ILfIDEIDaL~~~r~~~~~~~~~~~~~iln~LL~~LDg~~~~~~ViVIATTN 602 (979)
+++ .+|.|++...+|++|-.|+.++|+|||.||||+++..|..++++++++..+++-.||+++|||+...++-||.+||
T Consensus 216 elv-qk~igegsrmvrelfvmarehapsiifmdeidsigs~r~e~~~ggdsevqrtmlellnqldgfeatknikvimatn 294 (404)
T KOG0728|consen 216 ELV-QKYIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSSRVESGSGGDSEVQRTMLELLNQLDGFEATKNIKVIMATN 294 (404)
T ss_pred HHH-HHHhhhhHHHHHHHHHHHHhcCCceEeeecccccccccccCCCCccHHHHHHHHHHHHhccccccccceEEEEecc
Confidence 999 7899999999999999999999999999999999999988777888899999999999999999999999999999
Q ss_pred chhhchhhhhcCCceeeEeccCCCCHHHHHHHHHHHHHhccchhhhhhhhHHHHHHHcCCCCHHHHHHHHHHHhhhhhcc
Q 035561 603 NIKQIDEALQRPGRMDRIFNLQKPTQSEREKILRIAAQETMDEELIDLVDWRKVAEKTALLRPIELKLVPVALEGSAFRS 682 (979)
Q Consensus 603 ~pe~LDpALlRpgRFd~~I~~~~Pd~eeR~~IL~~~l~~~~~~~l~~dvdL~~LA~~T~GfsgaDL~~Lv~aa~~aa~r~ 682 (979)
+.+.|||||+||||.|+.|+||+|+.+.|.+||+.|.++. .+...+|+..+|++.+|.||++++.+|..+...++|.
T Consensus 295 ridild~allrpgridrkiefp~p~e~ar~~ilkihsrkm---nl~rgi~l~kiaekm~gasgaevk~vcteagm~alre 371 (404)
T KOG0728|consen 295 RIDILDPALLRPGRIDRKIEFPPPNEEARLDILKIHSRKM---NLTRGINLRKIAEKMPGASGAEVKGVCTEAGMYALRE 371 (404)
T ss_pred ccccccHhhcCCCcccccccCCCCCHHHHHHHHHHhhhhh---chhcccCHHHHHHhCCCCccchhhhhhhhhhHHHHHH
Confidence 9999999999999999999999999999999999999876 6788999999999999999999999998888877765
Q ss_pred C
Q 035561 683 K 683 (979)
Q Consensus 683 ~ 683 (979)
.
T Consensus 372 r 372 (404)
T KOG0728|consen 372 R 372 (404)
T ss_pred h
Confidence 4
No 17
>KOG0652 consensus 26S proteasome regulatory complex, ATPase RPT5 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=5.3e-40 Score=344.09 Aligned_cols=233 Identities=29% Similarity=0.492 Sum_probs=220.0
Q ss_pred CCCCCCCCcccCcHHHHHHHHHHHHh-hcChhHHHhcCCCCCceeEecCCCCCChHHHHHHHHHHcCCCEEEeechhhhh
Q 035561 448 KNPPIPLKDFASVESMREEINEVVAF-LQNPSAFQEMGARAPRGVLIVGERGTGKTSLALAIAAEARVPVVNVEAQELEA 526 (979)
Q Consensus 448 ~~~~~~f~DIvGleevke~L~eiV~~-L~~p~~f~~lG~~~P~gVLL~GPPGTGKTtLArAlA~elg~~~i~Is~sdL~~ 526 (979)
+.|.-+++||+|++...++|.+.+.. +.++++|..+|+++|+|+|+|||||||||++|||.|...+..|+.+-+..++
T Consensus 164 ekPtE~YsDiGGldkQIqELvEAiVLpmth~ekF~~lgi~pPKGvLmYGPPGTGKTlmARAcAaqT~aTFLKLAgPQLV- 242 (424)
T KOG0652|consen 164 EKPTEQYSDIGGLDKQIQELVEAIVLPMTHKEKFENLGIRPPKGVLMYGPPGTGKTLMARACAAQTNATFLKLAGPQLV- 242 (424)
T ss_pred cCCcccccccccHHHHHHHHHHHhccccccHHHHHhcCCCCCCceEeeCCCCCcHHHHHHHHHHhccchHHHhcchHHH-
Confidence 57788999999999999999886655 9999999999999999999999999999999999999999999999999998
Q ss_pred hhhcccchhhHHHHHHHHHhcCCeEEEEcCccccccccccccCCCchhhHHHHHHHHhhhcccccCCeEEEEecccchhh
Q 035561 527 GLWVGQSASNVRELFQTARDLAPVIIFVEDFDLFAGVRGQFIHTKQQDHESFINQLLVELDGFEKQDGVVLMATTRNIKQ 606 (979)
Q Consensus 527 ~~~vG~~~~~Ir~lF~~A~~~aP~ILfIDEIDaL~~~r~~~~~~~~~~~~~iln~LL~~LDg~~~~~~ViVIATTN~pe~ 606 (979)
.+|.|.+++.+|+.|..|+..+|+||||||+|+++.+|......++.+..+++-.||+++|||+++..+-|||+||+.+.
T Consensus 243 QMfIGdGAkLVRDAFaLAKEkaP~IIFIDElDAIGtKRfDSek~GDREVQRTMLELLNQLDGFss~~~vKviAATNRvDi 322 (424)
T KOG0652|consen 243 QMFIGDGAKLVRDAFALAKEKAPTIIFIDELDAIGTKRFDSEKAGDREVQRTMLELLNQLDGFSSDDRVKVIAATNRVDI 322 (424)
T ss_pred hhhhcchHHHHHHHHHHhhccCCeEEEEechhhhccccccccccccHHHHHHHHHHHHhhcCCCCccceEEEeecccccc
Confidence 89999999999999999999999999999999999998776667778889999999999999999999999999999999
Q ss_pred chhhhhcCCceeeEeccCCCCHHHHHHHHHHHHHhccchhhhhhhhHHHHHHHcCCCCHHHHHHHHHHHhhhhhccCC
Q 035561 607 IDEALQRPGRMDRIFNLQKPTQSEREKILRIAAQETMDEELIDLVDWRKVAEKTALLRPIELKLVPVALEGSAFRSKF 684 (979)
Q Consensus 607 LDpALlRpgRFd~~I~~~~Pd~eeR~~IL~~~l~~~~~~~l~~dvdL~~LA~~T~GfsgaDL~~Lv~aa~~aa~r~~~ 684 (979)
|||||+|+||+|+.|+||.|+.+.|..|++.|.++. ...++++|++||+.|++|+|+.++++|-.+...++|+..
T Consensus 323 LDPALlRSGRLDRKIEfP~Pne~aRarIlQIHsRKM---nv~~DvNfeELaRsTddFNGAQcKAVcVEAGMiALRr~a 397 (424)
T KOG0652|consen 323 LDPALLRSGRLDRKIEFPHPNEEARARILQIHSRKM---NVSDDVNFEELARSTDDFNGAQCKAVCVEAGMIALRRGA 397 (424)
T ss_pred cCHHHhhcccccccccCCCCChHHHHHHHHHhhhhc---CCCCCCCHHHHhhcccccCchhheeeehhhhHHHHhccc
Confidence 999999999999999999999999999999999876 678899999999999999999999999998888888653
No 18
>KOG0735 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=3e-39 Score=372.50 Aligned_cols=230 Identities=33% Similarity=0.490 Sum_probs=214.0
Q ss_pred cccCCCCCCCCcccCcHHHHHHHHHHHHh-hcChhHHHhcCCCCCceeEecCCCCCChHHHHHHHHHHcCCCEEEeechh
Q 035561 445 KRVKNPPIPLKDFASVESMREEINEVVAF-LQNPSAFQEMGARAPRGVLIVGERGTGKTSLALAIAAEARVPVVNVEAQE 523 (979)
Q Consensus 445 ~~v~~~~~~f~DIvGleevke~L~eiV~~-L~~p~~f~~lG~~~P~gVLL~GPPGTGKTtLArAlA~elg~~~i~Is~sd 523 (979)
.-.+...+.|+||+|+.++|+.|.+++.+ -+.|..|...+++.+.|||||||||||||+||.++|...+..|+++.+.+
T Consensus 657 k~~k~tgi~w~digg~~~~k~~l~~~i~~P~kyp~if~~~plr~~~giLLyGppGcGKT~la~a~a~~~~~~fisvKGPE 736 (952)
T KOG0735|consen 657 KLVKSTGIRWEDIGGLFEAKKVLEEVIEWPSKYPQIFANCPLRLRTGILLYGPPGCGKTLLASAIASNSNLRFISVKGPE 736 (952)
T ss_pred cccccCCCCceecccHHHHHHHHHHHHhccccchHHHhhCCcccccceEEECCCCCcHHHHHHHHHhhCCeeEEEecCHH
Confidence 33455669999999999999999999999 88999999999999999999999999999999999999999999999999
Q ss_pred hhhhhhcccchhhHHHHHHHHHhcCCeEEEEcCccccccccccccCCCchhhHHHHHHHHhhhcccccCCeEEEEecccc
Q 035561 524 LEAGLWVGQSASNVRELFQTARDLAPVIIFVEDFDLFAGVRGQFIHTKQQDHESFINQLLVELDGFEKQDGVVLMATTRN 603 (979)
Q Consensus 524 L~~~~~vG~~~~~Ir~lF~~A~~~aP~ILfIDEIDaL~~~r~~~~~~~~~~~~~iln~LL~~LDg~~~~~~ViVIATTN~ 603 (979)
+. ++|.|.++.++|++|..|+..+|||||+||+|+++|+||. .+.....+++||||++|||.+.-.+|.|+|+|.+
T Consensus 737 lL-~KyIGaSEq~vR~lF~rA~~a~PCiLFFDEfdSiAPkRGh---DsTGVTDRVVNQlLTelDG~Egl~GV~i~aaTsR 812 (952)
T KOG0735|consen 737 LL-SKYIGASEQNVRDLFERAQSAKPCILFFDEFDSIAPKRGH---DSTGVTDRVVNQLLTELDGAEGLDGVYILAATSR 812 (952)
T ss_pred HH-HHHhcccHHHHHHHHHHhhccCCeEEEeccccccCcccCC---CCCCchHHHHHHHHHhhccccccceEEEEEecCC
Confidence 98 8899999999999999999999999999999999999985 3445678999999999999999999999999999
Q ss_pred hhhchhhhhcCCceeeEeccCCCCHHHHHHHHHHHHHhccchhhhhhhhHHHHHHHcCCCCHHHHHHHHHHHhhhhhc
Q 035561 604 IKQIDEALQRPGRMDRIFNLQKPTQSEREKILRIAAQETMDEELIDLVDWRKVAEKTALLRPIELKLVPVALEGSAFR 681 (979)
Q Consensus 604 pe~LDpALlRpgRFd~~I~~~~Pd~eeR~~IL~~~l~~~~~~~l~~dvdL~~LA~~T~GfsgaDL~~Lv~aa~~aa~r 681 (979)
|+.|||||+||||+|+.++.|.|++.+|.+|++...... ...+++|++.+|..|+||||+||..|+-.++.++.+
T Consensus 813 pdliDpALLRpGRlD~~v~C~~P~~~eRl~il~~ls~s~---~~~~~vdl~~~a~~T~g~tgADlq~ll~~A~l~avh 887 (952)
T KOG0735|consen 813 PDLIDPALLRPGRLDKLVYCPLPDEPERLEILQVLSNSL---LKDTDVDLECLAQKTDGFTGADLQSLLYNAQLAAVH 887 (952)
T ss_pred ccccCHhhcCCCccceeeeCCCCCcHHHHHHHHHHhhcc---CCccccchHHHhhhcCCCchhhHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999998765 567799999999999999999999998776666544
No 19
>KOG0729 consensus 26S proteasome regulatory complex, ATPase RPT1 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.6e-39 Score=339.71 Aligned_cols=231 Identities=29% Similarity=0.439 Sum_probs=217.0
Q ss_pred cCCCCCCCCcccCcHHHHHHHHHHHHh-hcChhHHHhcCCCCCceeEecCCCCCChHHHHHHHHHHcCCCEEEeechhhh
Q 035561 447 VKNPPIPLKDFASVESMREEINEVVAF-LQNPSAFQEMGARAPRGVLIVGERGTGKTSLALAIAAEARVPVVNVEAQELE 525 (979)
Q Consensus 447 v~~~~~~f~DIvGleevke~L~eiV~~-L~~p~~f~~lG~~~P~gVLL~GPPGTGKTtLArAlA~elg~~~i~Is~sdL~ 525 (979)
.+.|.++++|++|..+..+.|+++++. +.+|+.|..+|+.+|+|||||||||||||++|||+|+..+..|+.+-+|+++
T Consensus 169 eekpdvty~dvggckeqieklrevve~pll~perfv~lgidppkgvllygppgtgktl~aravanrtdacfirvigselv 248 (435)
T KOG0729|consen 169 EEKPDVTYSDVGGCKEQIEKLREVVELPLLHPERFVNLGIDPPKGVLLYGPPGTGKTLCARAVANRTDACFIRVIGSELV 248 (435)
T ss_pred ecCCCcccccccchHHHHHHHHHHHhccccCHHHHhhcCCCCCCceEEeCCCCCchhHHHHHHhcccCceEEeehhHHHH
Confidence 367899999999999999999999998 9999999999999999999999999999999999999999999999999999
Q ss_pred hhhhcccchhhHHHHHHHHHhcCCeEEEEcCccccccccccccCCCchhhHHHHHHHHhhhcccccCCeEEEEecccchh
Q 035561 526 AGLWVGQSASNVRELFQTARDLAPVIIFVEDFDLFAGVRGQFIHTKQQDHESFINQLLVELDGFEKQDGVVLMATTRNIK 605 (979)
Q Consensus 526 ~~~~vG~~~~~Ir~lF~~A~~~aP~ILfIDEIDaL~~~r~~~~~~~~~~~~~iln~LL~~LDg~~~~~~ViVIATTN~pe 605 (979)
.+|+|+++..+|++|+.|+...-||||+||||++++.|-..+.+++.+..+++-.|++++|||....++-|+.+||+|+
T Consensus 249 -qkyvgegarmvrelf~martkkaciiffdeidaiggarfddg~ggdnevqrtmleli~qldgfdprgnikvlmatnrpd 327 (435)
T KOG0729|consen 249 -QKYVGEGARMVRELFEMARTKKACIIFFDEIDAIGGARFDDGAGGDNEVQRTMLELINQLDGFDPRGNIKVLMATNRPD 327 (435)
T ss_pred -HHHhhhhHHHHHHHHHHhcccceEEEEeeccccccCccccCCCCCcHHHHHHHHHHHHhccCCCCCCCeEEEeecCCCC
Confidence 7899999999999999999999999999999999999866556677788999999999999999999999999999999
Q ss_pred hchhhhhcCCceeeEeccCCCCHHHHHHHHHHHHHhccchhhhhhhhHHHHHHHcCCCCHHHHHHHHHHHhhhhhc
Q 035561 606 QIDEALQRPGRMDRIFNLQKPTQSEREKILRIAAQETMDEELIDLVDWRKVAEKTALLRPIELKLVPVALEGSAFR 681 (979)
Q Consensus 606 ~LDpALlRpgRFd~~I~~~~Pd~eeR~~IL~~~l~~~~~~~l~~dvdL~~LA~~T~GfsgaDL~~Lv~aa~~aa~r 681 (979)
.|||||+||||+|+.++|..||.+.|..|++.|.+.. ....++-|+-||+.|+.-+|++|..+|..+...+++
T Consensus 328 tldpallrpgrldrkvef~lpdlegrt~i~kihaksm---sverdir~ellarlcpnstgaeirsvcteagmfair 400 (435)
T KOG0729|consen 328 TLDPALLRPGRLDRKVEFGLPDLEGRTHIFKIHAKSM---SVERDIRFELLARLCPNSTGAEIRSVCTEAGMFAIR 400 (435)
T ss_pred CcCHhhcCCcccccceeccCCcccccceeEEEecccc---ccccchhHHHHHhhCCCCcchHHHHHHHHhhHHHHH
Confidence 9999999999999999999999999999999999876 567789999999999999999999999776665554
No 20
>KOG0727 consensus 26S proteasome regulatory complex, ATPase RPT3 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.3e-38 Score=332.63 Aligned_cols=236 Identities=26% Similarity=0.476 Sum_probs=221.7
Q ss_pred hcccCCCCCCCCcccCcHHHHHHHHHHHHh-hcChhHHHhcCCCCCceeEecCCCCCChHHHHHHHHHHcCCCEEEeech
Q 035561 444 MKRVKNPPIPLKDFASVESMREEINEVVAF-LQNPSAFQEMGARAPRGVLIVGERGTGKTSLALAIAAEARVPVVNVEAQ 522 (979)
Q Consensus 444 l~~v~~~~~~f~DIvGleevke~L~eiV~~-L~~p~~f~~lG~~~P~gVLL~GPPGTGKTtLArAlA~elg~~~i~Is~s 522 (979)
+...++|.+++.||+|++-.|+++++.++. |.+.+.|+..|+.+|+|||||||||||||+||+|+|+.....|+.+.+|
T Consensus 144 l~~~ekpdvsy~diggld~qkqeireavelplt~~~ly~qigidpprgvllygppg~gktml~kava~~t~a~firvvgs 223 (408)
T KOG0727|consen 144 LGPDEKPDVSYADIGGLDVQKQEIREAVELPLTHADLYKQIGIDPPRGVLLYGPPGTGKTMLAKAVANHTTAAFIRVVGS 223 (408)
T ss_pred cCCCCCCCccccccccchhhHHHHHHHHhccchHHHHHHHhCCCCCcceEEeCCCCCcHHHHHHHHhhccchheeeeccH
Confidence 344578999999999999999999999998 9999999999999999999999999999999999999999999999999
Q ss_pred hhhhhhhcccchhhHHHHHHHHHhcCCeEEEEcCccccccccccccCCCchhhHHHHHHHHhhhcccccCCeEEEEeccc
Q 035561 523 ELEAGLWVGQSASNVRELFQTARDLAPVIIFVEDFDLFAGVRGQFIHTKQQDHESFINQLLVELDGFEKQDGVVLMATTR 602 (979)
Q Consensus 523 dL~~~~~vG~~~~~Ir~lF~~A~~~aP~ILfIDEIDaL~~~r~~~~~~~~~~~~~iln~LL~~LDg~~~~~~ViVIATTN 602 (979)
+|+ .+|.|++...+|++|..|+.++|+|+||||+|+++.+|-....+.+.+..+++-.||++||||....+|-||.+||
T Consensus 224 efv-qkylgegprmvrdvfrlakenapsiifideidaiatkrfdaqtgadrevqril~ellnqmdgfdq~~nvkvimatn 302 (408)
T KOG0727|consen 224 EFV-QKYLGEGPRMVRDVFRLAKENAPSIIFIDEIDAIATKRFDAQTGADREVQRILIELLNQMDGFDQTTNVKVIMATN 302 (408)
T ss_pred HHH-HHHhccCcHHHHHHHHHHhccCCcEEEeehhhhHhhhhccccccccHHHHHHHHHHHHhccCcCcccceEEEEecC
Confidence 999 7899999999999999999999999999999999998876667778889999999999999999999999999999
Q ss_pred chhhchhhhhcCCceeeEeccCCCCHHHHHHHHHHHHHhccchhhhhhhhHHHHHHHcCCCCHHHHHHHHHHHhhhhhcc
Q 035561 603 NIKQIDEALQRPGRMDRIFNLQKPTQSEREKILRIAAQETMDEELIDLVDWRKVAEKTALLRPIELKLVPVALEGSAFRS 682 (979)
Q Consensus 603 ~pe~LDpALlRpgRFd~~I~~~~Pd~eeR~~IL~~~l~~~~~~~l~~dvdL~~LA~~T~GfsgaDL~~Lv~aa~~aa~r~ 682 (979)
+.+.|||||+||||+|+.|+||.||..+++-++.....+. .+.+++|++.+..+-+..||+||.++|+.+...+.|.
T Consensus 303 radtldpallrpgrldrkiefplpdrrqkrlvf~titskm---~ls~~vdle~~v~rpdkis~adi~aicqeagm~avr~ 379 (408)
T KOG0727|consen 303 RADTLDPALLRPGRLDRKIEFPLPDRRQKRLVFSTITSKM---NLSDEVDLEDLVARPDKISGADINAICQEAGMLAVRE 379 (408)
T ss_pred cccccCHhhcCCccccccccCCCCchhhhhhhHHhhhhcc---cCCcccCHHHHhcCccccchhhHHHHHHHHhHHHHHh
Confidence 9999999999999999999999999999999999888775 6788999999999999999999999999888777664
Q ss_pred C
Q 035561 683 K 683 (979)
Q Consensus 683 ~ 683 (979)
.
T Consensus 380 n 380 (408)
T KOG0727|consen 380 N 380 (408)
T ss_pred c
Confidence 3
No 21
>KOG0739 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=9.7e-39 Score=339.86 Aligned_cols=231 Identities=27% Similarity=0.511 Sum_probs=206.4
Q ss_pred HHhhcccCCCCCCCCcccCcHHHHHHHHHHHHh-hcChhHHHhcCCCCC-ceeEecCCCCCChHHHHHHHHHHcCCCEEE
Q 035561 441 FERMKRVKNPPIPLKDFASVESMREEINEVVAF-LQNPSAFQEMGARAP-RGVLIVGERGTGKTSLALAIAAEARVPVVN 518 (979)
Q Consensus 441 ~~~l~~v~~~~~~f~DIvGleevke~L~eiV~~-L~~p~~f~~lG~~~P-~gVLL~GPPGTGKTtLArAlA~elg~~~i~ 518 (979)
++...-.+.|++.|+||+|++.+|+.|++.|.. ++-|+.|. |-+.| +|+|||||||||||.||+|+|.+++..|++
T Consensus 119 L~sAIv~EKPNVkWsDVAGLE~AKeALKEAVILPIKFPqlFt--GkR~PwrgiLLyGPPGTGKSYLAKAVATEAnSTFFS 196 (439)
T KOG0739|consen 119 LNSAIVREKPNVKWSDVAGLEGAKEALKEAVILPIKFPQLFT--GKRKPWRGILLYGPPGTGKSYLAKAVATEANSTFFS 196 (439)
T ss_pred hhhhhhccCCCCchhhhccchhHHHHHHhheeecccchhhhc--CCCCcceeEEEeCCCCCcHHHHHHHHHhhcCCceEE
Confidence 333455688999999999999999999997765 88899887 65555 899999999999999999999999999999
Q ss_pred eechhhhhhhhcccchhhHHHHHHHHHhcCCeEEEEcCccccccccccccCCCchhhHHHHHHHHhhhccccc-CCeEEE
Q 035561 519 VEAQELEAGLWVGQSASNVRELFQTARDLAPVIIFVEDFDLFAGVRGQFIHTKQQDHESFINQLLVELDGFEK-QDGVVL 597 (979)
Q Consensus 519 Is~sdL~~~~~vG~~~~~Ir~lF~~A~~~aP~ILfIDEIDaL~~~r~~~~~~~~~~~~~iln~LL~~LDg~~~-~~~ViV 597 (979)
|+.|+|+ ++|.|++++.++++|+.|+.+.|+||||||||++|+.|+. +.++...++...||.+|.|... +++|+|
T Consensus 197 vSSSDLv-SKWmGESEkLVknLFemARe~kPSIIFiDEiDslcg~r~e---nEseasRRIKTEfLVQMqGVG~d~~gvLV 272 (439)
T KOG0739|consen 197 VSSSDLV-SKWMGESEKLVKNLFEMARENKPSIIFIDEIDSLCGSRSE---NESEASRRIKTEFLVQMQGVGNDNDGVLV 272 (439)
T ss_pred eehHHHH-HHHhccHHHHHHHHHHHHHhcCCcEEEeehhhhhccCCCC---CchHHHHHHHHHHHHhhhccccCCCceEE
Confidence 9999999 8899999999999999999999999999999999998874 4566778899999999999854 568999
Q ss_pred EecccchhhchhhhhcCCceeeEeccCCCCHHHHHHHHHHHHHhccchhhhhhhhHHHHHHHcCCCCHHHHHHHHHHHhh
Q 035561 598 MATTRNIKQIDEALQRPGRMDRIFNLQKPTQSEREKILRIAAQETMDEELIDLVDWRKVAEKTALLRPIELKLVPVALEG 677 (979)
Q Consensus 598 IATTN~pe~LDpALlRpgRFd~~I~~~~Pd~eeR~~IL~~~l~~~~~~~l~~dvdL~~LA~~T~GfsgaDL~~Lv~aa~~ 677 (979)
+++||-|+.||.|++| ||++.|++|.|+...|..+++.|+.+.. .....-|+..|+++|+||||+||.-+++.+..
T Consensus 273 LgATNiPw~LDsAIRR--RFekRIYIPLPe~~AR~~MF~lhlG~tp--~~LT~~d~~eL~~kTeGySGsDisivVrDalm 348 (439)
T KOG0739|consen 273 LGATNIPWVLDSAIRR--RFEKRIYIPLPEAHARARMFKLHLGDTP--HVLTEQDFKELARKTEGYSGSDISIVVRDALM 348 (439)
T ss_pred EecCCCchhHHHHHHH--HhhcceeccCCcHHHhhhhheeccCCCc--cccchhhHHHHHhhcCCCCcCceEEEehhhhh
Confidence 9999999999999999 9999999999999999999999998763 45667899999999999999999987766555
Q ss_pred hhhc
Q 035561 678 SAFR 681 (979)
Q Consensus 678 aa~r 681 (979)
-..|
T Consensus 349 ePvR 352 (439)
T KOG0739|consen 349 EPVR 352 (439)
T ss_pred hhHH
Confidence 4443
No 22
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=100.00 E-value=7.3e-38 Score=357.49 Aligned_cols=233 Identities=27% Similarity=0.487 Sum_probs=213.1
Q ss_pred ccCCCCCCCCcccCcHHHHHHHHHHHHh-hcChhHHHhcCCCCCceeEecCCCCCChHHHHHHHHHHcCCCEEEeechhh
Q 035561 446 RVKNPPIPLKDFASVESMREEINEVVAF-LQNPSAFQEMGARAPRGVLIVGERGTGKTSLALAIAAEARVPVVNVEAQEL 524 (979)
Q Consensus 446 ~v~~~~~~f~DIvGleevke~L~eiV~~-L~~p~~f~~lG~~~P~gVLL~GPPGTGKTtLArAlA~elg~~~i~Is~sdL 524 (979)
....|+++|+||+|++.++++|++.+.. +.+|..|..+|+.+|+|+|||||||||||++|+++|++++.+++.+.++++
T Consensus 136 ~~~~p~v~~~digGl~~~k~~l~~~v~~pl~~~~~~~~~Gl~~pkgvLL~GppGTGKT~LAkalA~~l~~~fi~i~~s~l 215 (398)
T PTZ00454 136 MSEKPDVTYSDIGGLDIQKQEIREAVELPLTCPELYEQIGIDPPRGVLLYGPPGTGKTMLAKAVAHHTTATFIRVVGSEF 215 (398)
T ss_pred ccCCCCCCHHHcCCHHHHHHHHHHHHHHHhcCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhcCCCEEEEehHHH
Confidence 3467899999999999999999999886 999999999999999999999999999999999999999999999999998
Q ss_pred hhhhhcccchhhHHHHHHHHHhcCCeEEEEcCccccccccccccCCCchhhHHHHHHHHhhhcccccCCeEEEEecccch
Q 035561 525 EAGLWVGQSASNVRELFQTARDLAPVIIFVEDFDLFAGVRGQFIHTKQQDHESFINQLLVELDGFEKQDGVVLMATTRNI 604 (979)
Q Consensus 525 ~~~~~vG~~~~~Ir~lF~~A~~~aP~ILfIDEIDaL~~~r~~~~~~~~~~~~~iln~LL~~LDg~~~~~~ViVIATTN~p 604 (979)
. .+|.|+++..++++|..|+..+||||||||+|+++++|.....+.+....+++.+|+..||++....+++||+|||++
T Consensus 216 ~-~k~~ge~~~~lr~lf~~A~~~~P~ILfIDEID~i~~~r~~~~~~~d~~~~r~l~~LL~~ld~~~~~~~v~VI~aTN~~ 294 (398)
T PTZ00454 216 V-QKYLGEGPRMVRDVFRLARENAPSIIFIDEVDSIATKRFDAQTGADREVQRILLELLNQMDGFDQTTNVKVIMATNRA 294 (398)
T ss_pred H-HHhcchhHHHHHHHHHHHHhcCCeEEEEECHhhhccccccccCCccHHHHHHHHHHHHHhhccCCCCCEEEEEecCCc
Confidence 7 678999999999999999999999999999999998775433334455678899999999999888889999999999
Q ss_pred hhchhhhhcCCceeeEeccCCCCHHHHHHHHHHHHHhccchhhhhhhhHHHHHHHcCCCCHHHHHHHHHHHhhhhhcc
Q 035561 605 KQIDEALQRPGRMDRIFNLQKPTQSEREKILRIAAQETMDEELIDLVDWRKVAEKTALLRPIELKLVPVALEGSAFRS 682 (979)
Q Consensus 605 e~LDpALlRpgRFd~~I~~~~Pd~eeR~~IL~~~l~~~~~~~l~~dvdL~~LA~~T~GfsgaDL~~Lv~aa~~aa~r~ 682 (979)
+.|||+++||||||+.|+|+.|+.++|..|++.++.+. .+..++|+..+|..|+||||+||.++|+.+...++++
T Consensus 295 d~LDpAllR~GRfd~~I~~~~P~~~~R~~Il~~~~~~~---~l~~dvd~~~la~~t~g~sgaDI~~l~~eA~~~A~r~ 369 (398)
T PTZ00454 295 DTLDPALLRPGRLDRKIEFPLPDRRQKRLIFQTITSKM---NLSEEVDLEDFVSRPEKISAADIAAICQEAGMQAVRK 369 (398)
T ss_pred hhCCHHHcCCCcccEEEEeCCcCHHHHHHHHHHHHhcC---CCCcccCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHc
Confidence 99999999999999999999999999999999998865 4567899999999999999999999998887776654
No 23
>COG1223 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=100.00 E-value=1.1e-38 Score=334.62 Aligned_cols=212 Identities=34% Similarity=0.509 Sum_probs=195.0
Q ss_pred CCCCCCCCcccCcHHHHHHHHHHHHhhcChhHHHhcCCCCCceeEecCCCCCChHHHHHHHHHHcCCCEEEeechhhhhh
Q 035561 448 KNPPIPLKDFASVESMREEINEVVAFLQNPSAFQEMGARAPRGVLIVGERGTGKTSLALAIAAEARVPVVNVEAQELEAG 527 (979)
Q Consensus 448 ~~~~~~f~DIvGleevke~L~eiV~~L~~p~~f~~lG~~~P~gVLL~GPPGTGKTtLArAlA~elg~~~i~Is~sdL~~~ 527 (979)
..+.++|+||+|++++|...+-++.+|.+|+.|..+ .|++||+|||||||||++|||+|+++++|++.+.+.+++ +
T Consensus 114 ~~~~it~ddViGqEeAK~kcrli~~yLenPe~Fg~W---APknVLFyGppGTGKTm~Akalane~kvp~l~vkat~li-G 189 (368)
T COG1223 114 IISDITLDDVIGQEEAKRKCRLIMEYLENPERFGDW---APKNVLFYGPPGTGKTMMAKALANEAKVPLLLVKATELI-G 189 (368)
T ss_pred hhccccHhhhhchHHHHHHHHHHHHHhhChHHhccc---CcceeEEECCCCccHHHHHHHHhcccCCceEEechHHHH-H
Confidence 356789999999999999999999999999988654 588999999999999999999999999999999999999 7
Q ss_pred hhcccchhhHHHHHHHHHhcCCeEEEEcCccccccccccccCCCchhhHHHHHHHHhhhcccccCCeEEEEecccchhhc
Q 035561 528 LWVGQSASNVRELFQTARDLAPVIIFVEDFDLFAGVRGQFIHTKQQDHESFINQLLVELDGFEKQDGVVLMATTRNIKQI 607 (979)
Q Consensus 528 ~~vG~~~~~Ir~lF~~A~~~aP~ILfIDEIDaL~~~r~~~~~~~~~~~~~iln~LL~~LDg~~~~~~ViVIATTN~pe~L 607 (979)
.++|.++.+++++|+.|++.+|||+||||+|+++-.|.-+. -..+...++|.||++|||+..+.+|+.||+||+|+.|
T Consensus 190 ehVGdgar~Ihely~rA~~~aPcivFiDE~DAiaLdRryQe--lRGDVsEiVNALLTelDgi~eneGVvtIaaTN~p~~L 267 (368)
T COG1223 190 EHVGDGARRIHELYERARKAAPCIVFIDELDAIALDRRYQE--LRGDVSEIVNALLTELDGIKENEGVVTIAATNRPELL 267 (368)
T ss_pred HHhhhHHHHHHHHHHHHHhcCCeEEEehhhhhhhhhhhHHH--hcccHHHHHHHHHHhccCcccCCceEEEeecCChhhc
Confidence 78999999999999999999999999999999987664321 1234678999999999999999999999999999999
Q ss_pred hhhhhcCCceeeEeccCCCCHHHHHHHHHHHHHhccchhhhhhhhHHHHHHHcCCCCHHHHHH
Q 035561 608 DEALQRPGRMDRIFNLQKPTQSEREKILRIAAQETMDEELIDLVDWRKVAEKTALLRPIELKL 670 (979)
Q Consensus 608 DpALlRpgRFd~~I~~~~Pd~eeR~~IL~~~l~~~~~~~l~~dvdL~~LA~~T~GfsgaDL~~ 670 (979)
|||+++ ||...|+|..|+.++|..|++.++++. ++.-+.+++.++++|.|+||.||..
T Consensus 268 D~aiRs--RFEeEIEF~LP~~eEr~~ile~y~k~~---Plpv~~~~~~~~~~t~g~SgRdike 325 (368)
T COG1223 268 DPAIRS--RFEEEIEFKLPNDEERLEILEYYAKKF---PLPVDADLRYLAAKTKGMSGRDIKE 325 (368)
T ss_pred CHHHHh--hhhheeeeeCCChHHHHHHHHHHHHhC---CCccccCHHHHHHHhCCCCchhHHH
Confidence 999999 999999999999999999999999986 5666788999999999999999984
No 24
>KOG0726 consensus 26S proteasome regulatory complex, ATPase RPT2 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=8.3e-39 Score=339.41 Aligned_cols=232 Identities=31% Similarity=0.503 Sum_probs=217.7
Q ss_pred cCCCCCCCCcccCcHHHHHHHHHHHHh-hcChhHHHhcCCCCCceeEecCCCCCChHHHHHHHHHHcCCCEEEeechhhh
Q 035561 447 VKNPPIPLKDFASVESMREEINEVVAF-LQNPSAFQEMGARAPRGVLIVGERGTGKTSLALAIAAEARVPVVNVEAQELE 525 (979)
Q Consensus 447 v~~~~~~f~DIvGleevke~L~eiV~~-L~~p~~f~~lG~~~P~gVLL~GPPGTGKTtLArAlA~elg~~~i~Is~sdL~ 525 (979)
.+.|.-++.|++|+++..+++++.++. |.+|+.|..+|+++|+||+|||+||||||+||+|+|+.....|+.+-+|+++
T Consensus 177 eKaP~Ety~diGGle~QiQEiKEsvELPLthPE~YeemGikpPKGVIlyG~PGTGKTLLAKAVANqTSATFlRvvGseLi 256 (440)
T KOG0726|consen 177 EKAPQETYADIGGLESQIQEIKESVELPLTHPEYYEEMGIKPPKGVILYGEPGTGKTLLAKAVANQTSATFLRVVGSELI 256 (440)
T ss_pred ccCchhhhcccccHHHHHHHHHHhhcCCCCCHHHHHHcCCCCCCeeEEeCCCCCchhHHHHHHhcccchhhhhhhhHHHH
Confidence 356778999999999999999999998 9999999999999999999999999999999999999999999999999999
Q ss_pred hhhhcccchhhHHHHHHHHHhcCCeEEEEcCccccccccccccCCCchhhHHHHHHHHhhhcccccCCeEEEEecccchh
Q 035561 526 AGLWVGQSASNVRELFQTARDLAPVIIFVEDFDLFAGVRGQFIHTKQQDHESFINQLLVELDGFEKQDGVVLMATTRNIK 605 (979)
Q Consensus 526 ~~~~vG~~~~~Ir~lF~~A~~~aP~ILfIDEIDaL~~~r~~~~~~~~~~~~~iln~LL~~LDg~~~~~~ViVIATTN~pe 605 (979)
.+|.|.+...+|++|..|..++|+|+||||||+++.+|-...+++..+..+++-.||+++|||.+...|-||.|||+.+
T Consensus 257 -QkylGdGpklvRqlF~vA~e~apSIvFiDEIdAiGtKRyds~SggerEiQrtmLELLNQldGFdsrgDvKvimATnrie 335 (440)
T KOG0726|consen 257 -QKYLGDGPKLVRELFRVAEEHAPSIVFIDEIDAIGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRGDVKVIMATNRIE 335 (440)
T ss_pred -HHHhccchHHHHHHHHHHHhcCCceEEeehhhhhccccccCCCccHHHHHHHHHHHHHhccCccccCCeEEEEeccccc
Confidence 7899999999999999999999999999999999999876666777888899999999999999999999999999999
Q ss_pred hchhhhhcCCceeeEeccCCCCHHHHHHHHHHHHHhccchhhhhhhhHHHHHHHcCCCCHHHHHHHHHHHhhhhhcc
Q 035561 606 QIDEALQRPGRMDRIFNLQKPTQSEREKILRIAAQETMDEELIDLVDWRKVAEKTALLRPIELKLVPVALEGSAFRS 682 (979)
Q Consensus 606 ~LDpALlRpgRFd~~I~~~~Pd~eeR~~IL~~~l~~~~~~~l~~dvdL~~LA~~T~GfsgaDL~~Lv~aa~~aa~r~ 682 (979)
.|||||.||||.|+.|+||.||...+..|+..|..+. .+..+++++.+...-+.+||+||+++|..+...|+|.
T Consensus 336 ~LDPaLiRPGrIDrKIef~~pDe~TkkkIf~IHTs~M---tl~~dVnle~li~~kddlSGAdIkAictEaGllAlRe 409 (440)
T KOG0726|consen 336 TLDPALIRPGRIDRKIEFPLPDEKTKKKIFQIHTSRM---TLAEDVNLEELIMTKDDLSGADIKAICTEAGLLALRE 409 (440)
T ss_pred ccCHhhcCCCccccccccCCCchhhhceeEEEeeccc---chhccccHHHHhhcccccccccHHHHHHHHhHHHHHH
Confidence 9999999999999999999999999999999998775 6778999999999999999999999997776665543
No 25
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=100.00 E-value=2.9e-37 Score=378.00 Aligned_cols=229 Identities=35% Similarity=0.599 Sum_probs=211.2
Q ss_pred CCCCCCCCcccCcHHHHHHHHHHHHh-hcChhHHHhcCCCCCceeEecCCCCCChHHHHHHHHHHcCCCEEEeechhhhh
Q 035561 448 KNPPIPLKDFASVESMREEINEVVAF-LQNPSAFQEMGARAPRGVLIVGERGTGKTSLALAIAAEARVPVVNVEAQELEA 526 (979)
Q Consensus 448 ~~~~~~f~DIvGleevke~L~eiV~~-L~~p~~f~~lG~~~P~gVLL~GPPGTGKTtLArAlA~elg~~~i~Is~sdL~~ 526 (979)
..|.++|+||+|++++|+.|++.+.+ ++++..|..+|.+.|+|+|||||||||||++|+++|++++.+|+.++++++.
T Consensus 446 ~~~~~~~~di~g~~~~k~~l~~~v~~~~~~~~~~~~~g~~~~~giLL~GppGtGKT~lakalA~e~~~~fi~v~~~~l~- 524 (733)
T TIGR01243 446 EVPNVRWSDIGGLEEVKQELREAVEWPLKHPEIFEKMGIRPPKGVLLFGPPGTGKTLLAKAVATESGANFIAVRGPEIL- 524 (733)
T ss_pred cccccchhhcccHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhcCCCEEEEehHHHh-
Confidence 45778999999999999999999987 9999999999999999999999999999999999999999999999999998
Q ss_pred hhhcccchhhHHHHHHHHHhcCCeEEEEcCccccccccccccCCCchhhHHHHHHHHhhhcccccCCeEEEEecccchhh
Q 035561 527 GLWVGQSASNVRELFQTARDLAPVIIFVEDFDLFAGVRGQFIHTKQQDHESFINQLLVELDGFEKQDGVVLMATTRNIKQ 606 (979)
Q Consensus 527 ~~~vG~~~~~Ir~lF~~A~~~aP~ILfIDEIDaL~~~r~~~~~~~~~~~~~iln~LL~~LDg~~~~~~ViVIATTN~pe~ 606 (979)
++|+|+++..++.+|..|+..+||||||||+|+|++.|+.. ..+....+++++||.+||++....+++||+|||+|+.
T Consensus 525 ~~~vGese~~i~~~f~~A~~~~p~iifiDEid~l~~~r~~~--~~~~~~~~~~~~lL~~ldg~~~~~~v~vI~aTn~~~~ 602 (733)
T TIGR01243 525 SKWVGESEKAIREIFRKARQAAPAIIFFDEIDAIAPARGAR--FDTSVTDRIVNQLLTEMDGIQELSNVVVIAATNRPDI 602 (733)
T ss_pred hcccCcHHHHHHHHHHHHHhcCCEEEEEEChhhhhccCCCC--CCccHHHHHHHHHHHHhhcccCCCCEEEEEeCCChhh
Confidence 78999999999999999999999999999999999888642 2233467899999999999988889999999999999
Q ss_pred chhhhhcCCceeeEeccCCCCHHHHHHHHHHHHHhccchhhhhhhhHHHHHHHcCCCCHHHHHHHHHHHhhhhhcc
Q 035561 607 IDEALQRPGRMDRIFNLQKPTQSEREKILRIAAQETMDEELIDLVDWRKVAEKTALLRPIELKLVPVALEGSAFRS 682 (979)
Q Consensus 607 LDpALlRpgRFd~~I~~~~Pd~eeR~~IL~~~l~~~~~~~l~~dvdL~~LA~~T~GfsgaDL~~Lv~aa~~aa~r~ 682 (979)
|||+++||||||+.|+||.||.++|.+||+.+.++. +..+++|+..||+.|+||||+||.++|+.+...++++
T Consensus 603 ld~allRpgRfd~~i~v~~Pd~~~R~~i~~~~~~~~---~~~~~~~l~~la~~t~g~sgadi~~~~~~A~~~a~~~ 675 (733)
T TIGR01243 603 LDPALLRPGRFDRLILVPPPDEEARKEIFKIHTRSM---PLAEDVDLEELAEMTEGYTGADIEAVCREAAMAALRE 675 (733)
T ss_pred CCHhhcCCCccceEEEeCCcCHHHHHHHHHHHhcCC---CCCccCCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999998765 5567899999999999999999999998887776664
No 26
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=100.00 E-value=5.8e-37 Score=350.08 Aligned_cols=232 Identities=35% Similarity=0.564 Sum_probs=212.3
Q ss_pred cCCCCCCCCcccCcHHHHHHHHHHHHh-hcChhHHHhcCCCCCceeEecCCCCCChHHHHHHHHHHcCCCEEEeechhhh
Q 035561 447 VKNPPIPLKDFASVESMREEINEVVAF-LQNPSAFQEMGARAPRGVLIVGERGTGKTSLALAIAAEARVPVVNVEAQELE 525 (979)
Q Consensus 447 v~~~~~~f~DIvGleevke~L~eiV~~-L~~p~~f~~lG~~~P~gVLL~GPPGTGKTtLArAlA~elg~~~i~Is~sdL~ 525 (979)
...|.++|+||+|+++.+++|++.+.. +.+|..|..+|+.+|+|+|||||||||||++|+++|++++.+|+.++++++.
T Consensus 123 ~~~p~~~~~di~Gl~~~~~~l~~~i~~pl~~~~~~~~~g~~~p~gvLL~GppGtGKT~lAkaia~~~~~~~i~v~~~~l~ 202 (389)
T PRK03992 123 IESPNVTYEDIGGLEEQIREVREAVELPLKKPELFEEVGIEPPKGVLLYGPPGTGKTLLAKAVAHETNATFIRVVGSELV 202 (389)
T ss_pred cCCCCCCHHHhCCcHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCceEEECCCCCChHHHHHHHHHHhCCCEEEeehHHHh
Confidence 466889999999999999999999887 9999999999999999999999999999999999999999999999999997
Q ss_pred hhhhcccchhhHHHHHHHHHhcCCeEEEEcCccccccccccccCCCchhhHHHHHHHHhhhcccccCCeEEEEecccchh
Q 035561 526 AGLWVGQSASNVRELFQTARDLAPVIIFVEDFDLFAGVRGQFIHTKQQDHESFINQLLVELDGFEKQDGVVLMATTRNIK 605 (979)
Q Consensus 526 ~~~~vG~~~~~Ir~lF~~A~~~aP~ILfIDEIDaL~~~r~~~~~~~~~~~~~iln~LL~~LDg~~~~~~ViVIATTN~pe 605 (979)
..|.|.++..++.+|..|+..+||||||||+|.+++.++.....++....+.+.+++.+++++....+++||+|||+++
T Consensus 203 -~~~~g~~~~~i~~~f~~a~~~~p~IlfiDEiD~l~~~r~~~~~~~~~~~~~~l~~lL~~ld~~~~~~~v~VI~aTn~~~ 281 (389)
T PRK03992 203 -QKFIGEGARLVRELFELAREKAPSIIFIDEIDAIAAKRTDSGTSGDREVQRTLMQLLAEMDGFDPRGNVKIIAATNRID 281 (389)
T ss_pred -HhhccchHHHHHHHHHHHHhcCCeEEEEechhhhhcccccCCCCccHHHHHHHHHHHHhccccCCCCCEEEEEecCChh
Confidence 6789999999999999999999999999999999988765434444566788889999999998878899999999999
Q ss_pred hchhhhhcCCceeeEeccCCCCHHHHHHHHHHHHHhccchhhhhhhhHHHHHHHcCCCCHHHHHHHHHHHhhhhhcc
Q 035561 606 QIDEALQRPGRMDRIFNLQKPTQSEREKILRIAAQETMDEELIDLVDWRKVAEKTALLRPIELKLVPVALEGSAFRS 682 (979)
Q Consensus 606 ~LDpALlRpgRFd~~I~~~~Pd~eeR~~IL~~~l~~~~~~~l~~dvdL~~LA~~T~GfsgaDL~~Lv~aa~~aa~r~ 682 (979)
.+|++++||||||+.|+|++|+.++|.+||+.++++. ....++++..+|..|+||+|+||.++|+.+...+++.
T Consensus 282 ~ld~allRpgRfd~~I~v~~P~~~~R~~Il~~~~~~~---~~~~~~~~~~la~~t~g~sgadl~~l~~eA~~~a~~~ 355 (389)
T PRK03992 282 ILDPAILRPGRFDRIIEVPLPDEEGRLEILKIHTRKM---NLADDVDLEELAELTEGASGADLKAICTEAGMFAIRD 355 (389)
T ss_pred hCCHHHcCCccCceEEEECCCCHHHHHHHHHHHhccC---CCCCcCCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHc
Confidence 9999999999999999999999999999999998865 4456789999999999999999999998887777665
No 27
>KOG0737 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=9.1e-37 Score=335.04 Aligned_cols=226 Identities=31% Similarity=0.512 Sum_probs=206.8
Q ss_pred CCCCCCCCcccCcHHHHHHHHHHHHh-hcChhHHHhcC-CCCCceeEecCCCCCChHHHHHHHHHHcCCCEEEeechhhh
Q 035561 448 KNPPIPLKDFASVESMREEINEVVAF-LQNPSAFQEMG-ARAPRGVLIVGERGTGKTSLALAIAAEARVPVVNVEAQELE 525 (979)
Q Consensus 448 ~~~~~~f~DIvGleevke~L~eiV~~-L~~p~~f~~lG-~~~P~gVLL~GPPGTGKTtLArAlA~elg~~~i~Is~sdL~ 525 (979)
..-.++|+||+|++++++.|++.|.. ++.|+.|...+ .++|+|||||||||||||++|+|+|+++|.+|+.++.+.+.
T Consensus 85 ~~I~v~f~DIggLe~v~~~L~e~VilPlr~pelF~~g~Ll~p~kGiLL~GPpG~GKTmlAKA~Akeaga~fInv~~s~lt 164 (386)
T KOG0737|consen 85 SEIGVSFDDIGGLEEVKDALQELVILPLRRPELFAKGKLLRPPKGILLYGPPGTGKTMLAKAIAKEAGANFINVSVSNLT 164 (386)
T ss_pred hhceeehhhccchHHHHHHHHHHHhhcccchhhhcccccccCCccceecCCCCchHHHHHHHHHHHcCCCcceeeccccc
Confidence 44568999999999999999998877 99999997544 46789999999999999999999999999999999999998
Q ss_pred hhhhcccchhhHHHHHHHHHhcCCeEEEEcCccccccccccccCCCchhhHHHHHHHHhhhcccccCCe--EEEEecccc
Q 035561 526 AGLWVGQSASNVRELFQTARDLAPVIIFVEDFDLFAGVRGQFIHTKQQDHESFINQLLVELDGFEKQDG--VVLMATTRN 603 (979)
Q Consensus 526 ~~~~vG~~~~~Ir~lF~~A~~~aP~ILfIDEIDaL~~~r~~~~~~~~~~~~~iln~LL~~LDg~~~~~~--ViVIATTN~ 603 (979)
++|.|++++.++.+|..|.+.+||||||||+|.+++.|. .+.++....+-+++....||+..+.+ |+|+||||+
T Consensus 165 -~KWfgE~eKlv~AvFslAsKl~P~iIFIDEvds~L~~R~---s~dHEa~a~mK~eFM~~WDGl~s~~~~rVlVlgATNR 240 (386)
T KOG0737|consen 165 -SKWFGEAQKLVKAVFSLASKLQPSIIFIDEVDSFLGQRR---STDHEATAMMKNEFMALWDGLSSKDSERVLVLGATNR 240 (386)
T ss_pred -hhhHHHHHHHHHHHHhhhhhcCcceeehhhHHHHHhhcc---cchHHHHHHHHHHHHHHhccccCCCCceEEEEeCCCC
Confidence 688999999999999999999999999999999999884 45667777888899999999976654 999999999
Q ss_pred hhhchhhhhcCCceeeEeccCCCCHHHHHHHHHHHHHhccchhhhhhhhHHHHHHHcCCCCHHHHHHHHHHHhhhhhcc
Q 035561 604 IKQIDEALQRPGRMDRIFNLQKPTQSEREKILRIAAQETMDEELIDLVDWRKVAEKTALLRPIELKLVPVALEGSAFRS 682 (979)
Q Consensus 604 pe~LDpALlRpgRFd~~I~~~~Pd~eeR~~IL~~~l~~~~~~~l~~dvdL~~LA~~T~GfsgaDL~~Lv~aa~~aa~r~ 682 (979)
|.+||.|++| |+.+.++|+.|+.++|.+||+..+++. .+.+++|+..+|..|+||||+||.++|+.+....++.
T Consensus 241 P~DlDeAiiR--R~p~rf~V~lP~~~qR~kILkviLk~e---~~e~~vD~~~iA~~t~GySGSDLkelC~~Aa~~~ire 314 (386)
T KOG0737|consen 241 PFDLDEAIIR--RLPRRFHVGLPDAEQRRKILKVILKKE---KLEDDVDLDEIAQMTEGYSGSDLKELCRLAALRPIRE 314 (386)
T ss_pred CccHHHHHHH--hCcceeeeCCCchhhHHHHHHHHhccc---ccCcccCHHHHHHhcCCCcHHHHHHHHHHHhHhHHHH
Confidence 9999999999 999999999999999999999999875 6779999999999999999999999998887776654
No 28
>COG0464 SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=7.7e-37 Score=358.82 Aligned_cols=231 Identities=37% Similarity=0.615 Sum_probs=212.7
Q ss_pred CCCCCCCCcccCcHHHHHHHHHHHHh-hcChhHHHhcCCCCCceeEecCCCCCChHHHHHHHHHHcCCCEEEeechhhhh
Q 035561 448 KNPPIPLKDFASVESMREEINEVVAF-LQNPSAFQEMGARAPRGVLIVGERGTGKTSLALAIAAEARVPVVNVEAQELEA 526 (979)
Q Consensus 448 ~~~~~~f~DIvGleevke~L~eiV~~-L~~p~~f~~lG~~~P~gVLL~GPPGTGKTtLArAlA~elg~~~i~Is~sdL~~ 526 (979)
..+.++|+|++|++++|+.+++.+.+ +..+..|...|.++|+|+|||||||||||++|+++|.+++.+|+.++++++.
T Consensus 235 ~~~~v~~~diggl~~~k~~l~e~v~~~~~~~e~~~~~~~~~~~giLl~GpPGtGKT~lAkava~~~~~~fi~v~~~~l~- 313 (494)
T COG0464 235 EDEDVTLDDIGGLEEAKEELKEAIETPLKRPELFRKLGLRPPKGVLLYGPPGTGKTLLAKAVALESRSRFISVKGSELL- 313 (494)
T ss_pred CCCCcceehhhcHHHHHHHHHHHHHhHhhChHHHHhcCCCCCCeeEEECCCCCCHHHHHHHHHhhCCCeEEEeeCHHHh-
Confidence 56789999999999999999999998 8899999999999999999999999999999999999999999999999887
Q ss_pred hhhcccchhhHHHHHHHHHhcCCeEEEEcCccccccccccccCCCchhhHHHHHHHHhhhcccccCCeEEEEecccchhh
Q 035561 527 GLWVGQSASNVRELFQTARDLAPVIIFVEDFDLFAGVRGQFIHTKQQDHESFINQLLVELDGFEKQDGVVLMATTRNIKQ 606 (979)
Q Consensus 527 ~~~vG~~~~~Ir~lF~~A~~~aP~ILfIDEIDaL~~~r~~~~~~~~~~~~~iln~LL~~LDg~~~~~~ViVIATTN~pe~ 606 (979)
++|+|+++++++.+|..|+..+||||||||+|++++.|+.. .+....+++++||.+||+++...+|+||+|||+|+.
T Consensus 314 sk~vGesek~ir~~F~~A~~~~p~iiFiDEiDs~~~~r~~~---~~~~~~r~~~~lL~~~d~~e~~~~v~vi~aTN~p~~ 390 (494)
T COG0464 314 SKWVGESEKNIRELFEKARKLAPSIIFIDEIDSLASGRGPS---EDGSGRRVVGQLLTELDGIEKAEGVLVIAATNRPDD 390 (494)
T ss_pred ccccchHHHHHHHHHHHHHcCCCcEEEEEchhhhhccCCCC---CchHHHHHHHHHHHHhcCCCccCceEEEecCCCccc
Confidence 88999999999999999999999999999999999988642 222236899999999999999999999999999999
Q ss_pred chhhhhcCCceeeEeccCCCCHHHHHHHHHHHHHhccchhhhhhhhHHHHHHHcCCCCHHHHHHHHHHHhhhhhccC
Q 035561 607 IDEALQRPGRMDRIFNLQKPTQSEREKILRIAAQETMDEELIDLVDWRKVAEKTALLRPIELKLVPVALEGSAFRSK 683 (979)
Q Consensus 607 LDpALlRpgRFd~~I~~~~Pd~eeR~~IL~~~l~~~~~~~l~~dvdL~~LA~~T~GfsgaDL~~Lv~aa~~aa~r~~ 683 (979)
+|++++||||||+.++||+||.++|.+|++.+++.... ....++|+..+++.|+||+|+||..+|+.+...+++..
T Consensus 391 ld~a~lR~gRfd~~i~v~~pd~~~r~~i~~~~~~~~~~-~~~~~~~~~~l~~~t~~~sgadi~~i~~ea~~~~~~~~ 466 (494)
T COG0464 391 LDPALLRPGRFDRLIYVPLPDLEERLEIFKIHLRDKKP-PLAEDVDLEELAEITEGYSGADIAALVREAALEALREA 466 (494)
T ss_pred cCHhhcccCccceEeecCCCCHHHHHHHHHHHhcccCC-cchhhhhHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999985421 35678999999999999999999999988877766654
No 29
>CHL00195 ycf46 Ycf46; Provisional
Probab=100.00 E-value=8.4e-36 Score=347.53 Aligned_cols=249 Identities=23% Similarity=0.350 Sum_probs=210.3
Q ss_pred CCCCCCCCcccCcHHHHHHHHHHHHhhcChhHHHhcCCCCCceeEecCCCCCChHHHHHHHHHHcCCCEEEeechhhhhh
Q 035561 448 KNPPIPLKDFASVESMREEINEVVAFLQNPSAFQEMGARAPRGVLIVGERGTGKTSLALAIAAEARVPVVNVEAQELEAG 527 (979)
Q Consensus 448 ~~~~~~f~DIvGleevke~L~eiV~~L~~p~~f~~lG~~~P~gVLL~GPPGTGKTtLArAlA~elg~~~i~Is~sdL~~~ 527 (979)
..+..+|+||+|++.+|+.|.+....+ +......|++.|+|+|||||||||||++|+++|++++.|++.++++.+. +
T Consensus 221 ~~~~~~~~dvgGl~~lK~~l~~~~~~~--~~~~~~~gl~~pkGILL~GPpGTGKTllAkaiA~e~~~~~~~l~~~~l~-~ 297 (489)
T CHL00195 221 YSVNEKISDIGGLDNLKDWLKKRSTSF--SKQASNYGLPTPRGLLLVGIQGTGKSLTAKAIANDWQLPLLRLDVGKLF-G 297 (489)
T ss_pred cCCCCCHHHhcCHHHHHHHHHHHHHHh--hHHHHhcCCCCCceEEEECCCCCcHHHHHHHHHHHhCCCEEEEEhHHhc-c
Confidence 346788999999999999998765433 2345678999999999999999999999999999999999999999988 6
Q ss_pred hhcccchhhHHHHHHHHHhcCCeEEEEcCccccccccccccCCCchhhHHHHHHHHhhhcccccCCeEEEEecccchhhc
Q 035561 528 LWVGQSASNVRELFQTARDLAPVIIFVEDFDLFAGVRGQFIHTKQQDHESFINQLLVELDGFEKQDGVVLMATTRNIKQI 607 (979)
Q Consensus 528 ~~vG~~~~~Ir~lF~~A~~~aP~ILfIDEIDaL~~~r~~~~~~~~~~~~~iln~LL~~LDg~~~~~~ViVIATTN~pe~L 607 (979)
.|+|+++.+++.+|+.|+..+||||||||||.++..+.. .+.+....++++.|+..|++ ...+|+||||||+++.|
T Consensus 298 ~~vGese~~l~~~f~~A~~~~P~IL~IDEID~~~~~~~~--~~d~~~~~rvl~~lL~~l~~--~~~~V~vIaTTN~~~~L 373 (489)
T CHL00195 298 GIVGESESRMRQMIRIAEALSPCILWIDEIDKAFSNSES--KGDSGTTNRVLATFITWLSE--KKSPVFVVATANNIDLL 373 (489)
T ss_pred cccChHHHHHHHHHHHHHhcCCcEEEehhhhhhhccccC--CCCchHHHHHHHHHHHHHhc--CCCceEEEEecCChhhC
Confidence 789999999999999999999999999999998765432 22334567888999988875 45679999999999999
Q ss_pred hhhhhcCCceeeEeccCCCCHHHHHHHHHHHHHhccchhhhhhhhHHHHHHHcCCCCHHHHHHHHHHHhhhhhccCCCCh
Q 035561 608 DEALQRPGRMDRIFNLQKPTQSEREKILRIAAQETMDEELIDLVDWRKVAEKTALLRPIELKLVPVALEGSAFRSKFLDT 687 (979)
Q Consensus 608 DpALlRpgRFd~~I~~~~Pd~eeR~~IL~~~l~~~~~~~l~~dvdL~~LA~~T~GfsgaDL~~Lv~aa~~aa~r~~~~s~ 687 (979)
||+++||||||+.++|+.|+.++|.+||+.++++... ....+.|+..||+.|+||||+||+++|..+...++....
T Consensus 374 d~allR~GRFD~~i~v~lP~~~eR~~Il~~~l~~~~~-~~~~~~dl~~La~~T~GfSGAdI~~lv~eA~~~A~~~~~--- 449 (489)
T CHL00195 374 PLEILRKGRFDEIFFLDLPSLEEREKIFKIHLQKFRP-KSWKKYDIKKLSKLSNKFSGAEIEQSIIEAMYIAFYEKR--- 449 (489)
T ss_pred CHHHhCCCcCCeEEEeCCcCHHHHHHHHHHHHhhcCC-CcccccCHHHHHhhcCCCCHHHHHHHHHHHHHHHHHcCC---
Confidence 9999999999999999999999999999999987532 223578999999999999999999999877766654332
Q ss_pred HHHhhhcchhhhccCCCccccc
Q 035561 688 DELMSYCGWFATFSGVVPKWFR 709 (979)
Q Consensus 688 ~ei~~~~d~~aAl~~~~P~~lR 709 (979)
-.+..|+..|++.+.|.+..
T Consensus 450 --~lt~~dl~~a~~~~~Pls~~ 469 (489)
T CHL00195 450 --EFTTDDILLALKQFIPLAQT 469 (489)
T ss_pred --CcCHHHHHHHHHhcCCCccc
Confidence 13556777788888886644
No 30
>PTZ00361 26 proteosome regulatory subunit 4-like protein; Provisional
Probab=100.00 E-value=6.3e-36 Score=344.15 Aligned_cols=231 Identities=30% Similarity=0.500 Sum_probs=210.3
Q ss_pred cCCCCCCCCcccCcHHHHHHHHHHHHh-hcChhHHHhcCCCCCceeEecCCCCCChHHHHHHHHHHcCCCEEEeechhhh
Q 035561 447 VKNPPIPLKDFASVESMREEINEVVAF-LQNPSAFQEMGARAPRGVLIVGERGTGKTSLALAIAAEARVPVVNVEAQELE 525 (979)
Q Consensus 447 v~~~~~~f~DIvGleevke~L~eiV~~-L~~p~~f~~lG~~~P~gVLL~GPPGTGKTtLArAlA~elg~~~i~Is~sdL~ 525 (979)
.+.|..+|+||+|+++.+++|++.+.. +.+|..|..+|+.+|+|+|||||||||||++|+++|++++.+|+.++++++.
T Consensus 175 ~~~p~~~~~DIgGl~~qi~~l~e~v~lpl~~p~~~~~~gi~~p~gVLL~GPPGTGKT~LAraIA~el~~~fi~V~~seL~ 254 (438)
T PTZ00361 175 DKAPLESYADIGGLEQQIQEIKEAVELPLTHPELYDDIGIKPPKGVILYGPPGTGKTLLAKAVANETSATFLRVVGSELI 254 (438)
T ss_pred ccCCCCCHHHhcCHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCcEEEEECCCCCCHHHHHHHHHHhhCCCEEEEecchhh
Confidence 356789999999999999999999986 9999999999999999999999999999999999999999999999999997
Q ss_pred hhhhcccchhhHHHHHHHHHhcCCeEEEEcCccccccccccccCCCchhhHHHHHHHHhhhcccccCCeEEEEecccchh
Q 035561 526 AGLWVGQSASNVRELFQTARDLAPVIIFVEDFDLFAGVRGQFIHTKQQDHESFINQLLVELDGFEKQDGVVLMATTRNIK 605 (979)
Q Consensus 526 ~~~~vG~~~~~Ir~lF~~A~~~aP~ILfIDEIDaL~~~r~~~~~~~~~~~~~iln~LL~~LDg~~~~~~ViVIATTN~pe 605 (979)
+.|.|.+...++.+|..|..++||||||||||+++.+|.....++.....+++..||..+|++....++.||+|||+++
T Consensus 255 -~k~~Ge~~~~vr~lF~~A~~~~P~ILfIDEID~l~~kR~~~~sgg~~e~qr~ll~LL~~Ldg~~~~~~V~VI~ATNr~d 333 (438)
T PTZ00361 255 -QKYLGDGPKLVRELFRVAEENAPSIVFIDEIDAIGTKRYDATSGGEKEIQRTMLELLNQLDGFDSRGDVKVIMATNRIE 333 (438)
T ss_pred -hhhcchHHHHHHHHHHHHHhCCCcEEeHHHHHHHhccCCCCCCcccHHHHHHHHHHHHHHhhhcccCCeEEEEecCChH
Confidence 6789999999999999999999999999999999987765444455566788889999999998778899999999999
Q ss_pred hchhhhhcCCceeeEeccCCCCHHHHHHHHHHHHHhccchhhhhhhhHHHHHHHcCCCCHHHHHHHHHHHhhhhhc
Q 035561 606 QIDEALQRPGRMDRIFNLQKPTQSEREKILRIAAQETMDEELIDLVDWRKVAEKTALLRPIELKLVPVALEGSAFR 681 (979)
Q Consensus 606 ~LDpALlRpgRFd~~I~~~~Pd~eeR~~IL~~~l~~~~~~~l~~dvdL~~LA~~T~GfsgaDL~~Lv~aa~~aa~r 681 (979)
.||++++||||||+.|+|+.||.++|.+||+.++.+. ...+++|+..++..|+||||+||.++|+.+...|++
T Consensus 334 ~LDpaLlRpGRfd~~I~~~~Pd~~~R~~Il~~~~~k~---~l~~dvdl~~la~~t~g~sgAdI~~i~~eA~~~Alr 406 (438)
T PTZ00361 334 SLDPALIRPGRIDRKIEFPNPDEKTKRRIFEIHTSKM---TLAEDVDLEEFIMAKDELSGADIKAICTEAGLLALR 406 (438)
T ss_pred HhhHHhccCCeeEEEEEeCCCCHHHHHHHHHHHHhcC---CCCcCcCHHHHHHhcCCCCHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999998765 456789999999999999999999999776655543
No 31
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=100.00 E-value=1.4e-35 Score=363.28 Aligned_cols=302 Identities=28% Similarity=0.466 Sum_probs=262.6
Q ss_pred CCCCCCCcccCcHHHHHHHHHHHHh-hcChhHHHhcCCCCCceeEecCCCCCChHHHHHHHHHHcCCCEEEeechhhhhh
Q 035561 449 NPPIPLKDFASVESMREEINEVVAF-LQNPSAFQEMGARAPRGVLIVGERGTGKTSLALAIAAEARVPVVNVEAQELEAG 527 (979)
Q Consensus 449 ~~~~~f~DIvGleevke~L~eiV~~-L~~p~~f~~lG~~~P~gVLL~GPPGTGKTtLArAlA~elg~~~i~Is~sdL~~~ 527 (979)
.+.++|+||+|++++++.+++.+.. +.+|+.|..+|+.+|+|+|||||||||||++|+++|++++.+++.++++++. +
T Consensus 172 ~~~~~~~di~G~~~~~~~l~~~i~~~~~~~~~~~~~gi~~~~giLL~GppGtGKT~laraia~~~~~~~i~i~~~~i~-~ 250 (733)
T TIGR01243 172 VPKVTYEDIGGLKEAKEKIREMVELPMKHPELFEHLGIEPPKGVLLYGPPGTGKTLLAKAVANEAGAYFISINGPEIM-S 250 (733)
T ss_pred CCCCCHHHhcCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCceEEEECCCCCChHHHHHHHHHHhCCeEEEEecHHHh-c
Confidence 4678999999999999999999887 8999999999999999999999999999999999999999999999999987 6
Q ss_pred hhcccchhhHHHHHHHHHhcCCeEEEEcCccccccccccccCCCchhhHHHHHHHHhhhcccccCCeEEEEecccchhhc
Q 035561 528 LWVGQSASNVRELFQTARDLAPVIIFVEDFDLFAGVRGQFIHTKQQDHESFINQLLVELDGFEKQDGVVLMATTRNIKQI 607 (979)
Q Consensus 528 ~~vG~~~~~Ir~lF~~A~~~aP~ILfIDEIDaL~~~r~~~~~~~~~~~~~iln~LL~~LDg~~~~~~ViVIATTN~pe~L 607 (979)
.+.|.++..++.+|+.|....|+||||||+|.++++++.. ......+++++|+..|+++.....++||+|||+++.|
T Consensus 251 ~~~g~~~~~l~~lf~~a~~~~p~il~iDEid~l~~~r~~~---~~~~~~~~~~~Ll~~ld~l~~~~~vivI~atn~~~~l 327 (733)
T TIGR01243 251 KYYGESEERLREIFKEAEENAPSIIFIDEIDAIAPKREEV---TGEVEKRVVAQLLTLMDGLKGRGRVIVIGATNRPDAL 327 (733)
T ss_pred ccccHHHHHHHHHHHHHHhcCCcEEEeehhhhhcccccCC---cchHHHHHHHHHHHHhhccccCCCEEEEeecCChhhc
Confidence 7899999999999999999999999999999999877532 2233457889999999999877889999999999999
Q ss_pred hhhhhcCCceeeEeccCCCCHHHHHHHHHHHHHhccchhhhhhhhHHHHHHHcCCCCHHHHHHHHHHHhhhhhccCCC--
Q 035561 608 DEALQRPGRMDRIFNLQKPTQSEREKILRIAAQETMDEELIDLVDWRKVAEKTALLRPIELKLVPVALEGSAFRSKFL-- 685 (979)
Q Consensus 608 DpALlRpgRFd~~I~~~~Pd~eeR~~IL~~~l~~~~~~~l~~dvdL~~LA~~T~GfsgaDL~~Lv~aa~~aa~r~~~~-- 685 (979)
|++++|+|||++.+.++.|+.++|.+||+.+.+.. ...+++++..+|+.|+||+++||..+|+.+...++++...
T Consensus 328 d~al~r~gRfd~~i~i~~P~~~~R~~Il~~~~~~~---~l~~d~~l~~la~~t~G~~gadl~~l~~~a~~~al~r~~~~~ 404 (733)
T TIGR01243 328 DPALRRPGRFDREIVIRVPDKRARKEILKVHTRNM---PLAEDVDLDKLAEVTHGFVGADLAALAKEAAMAALRRFIREG 404 (733)
T ss_pred CHHHhCchhccEEEEeCCcCHHHHHHHHHHHhcCC---CCccccCHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHhhcc
Confidence 99999999999999999999999999999888764 4556789999999999999999999998777666553210
Q ss_pred ----Ch---------HHHhhhcchhhhccCCCccccccchhhhhhhhhhhhhcCccccHHHHHHHHHhhhcccc------
Q 035561 686 ----DT---------DELMSYCGWFATFSGVVPKWFRKTKIVKKISRMLVDHLGLTLTKEDLQNVVDLMEPYGQ------ 746 (979)
Q Consensus 686 ----s~---------~ei~~~~d~~aAl~~~~P~~lR~~~llk~~~v~w~DiGGl~vtkedL~eAIe~~~kyg~------ 746 (979)
+. ....+..+|..|+..+.|+.+|.. ....+++.|.|+||+..+++.|.++++++.+|++
T Consensus 405 ~~~~~~~~i~~~~~~~~~v~~~df~~Al~~v~ps~~~~~-~~~~~~~~~~di~g~~~~k~~l~~~v~~~~~~~~~~~~~g 483 (733)
T TIGR01243 405 KINFEAEEIPAEVLKELKVTMKDFMEALKMVEPSAIREV-LVEVPNVRWSDIGGLEEVKQELREAVEWPLKHPEIFEKMG 483 (733)
T ss_pred ccccccccccchhcccccccHHHHHHHHhhccccccchh-hccccccchhhcccHHHHHHHHHHHHHhhhhCHHHHHhcC
Confidence 00 012345689999999999998876 4677899999999999999999999998777653
Q ss_pred --ccccccccCCCC
Q 035561 747 --ISNGIELLTPPL 758 (979)
Q Consensus 747 --i~aG~e~~sp~l 758 (979)
...|+-+++||+
T Consensus 484 ~~~~~giLL~GppG 497 (733)
T TIGR01243 484 IRPPKGVLLFGPPG 497 (733)
T ss_pred CCCCceEEEECCCC
Confidence 345777888887
No 32
>TIGR01242 26Sp45 26S proteasome subunit P45 family. Many proteins may score above the trusted cutoff because an internal
Probab=100.00 E-value=6.1e-34 Score=322.49 Aligned_cols=230 Identities=35% Similarity=0.542 Sum_probs=207.2
Q ss_pred CCCCCCCCcccCcHHHHHHHHHHHHh-hcChhHHHhcCCCCCceeEecCCCCCChHHHHHHHHHHcCCCEEEeechhhhh
Q 035561 448 KNPPIPLKDFASVESMREEINEVVAF-LQNPSAFQEMGARAPRGVLIVGERGTGKTSLALAIAAEARVPVVNVEAQELEA 526 (979)
Q Consensus 448 ~~~~~~f~DIvGleevke~L~eiV~~-L~~p~~f~~lG~~~P~gVLL~GPPGTGKTtLArAlA~elg~~~i~Is~sdL~~ 526 (979)
..|.++++||+|++++++.|++.+.. +.++..|..+|+.+|+|+|||||||||||++|+++|++++.+++.+.++++.
T Consensus 115 ~~p~~~~~di~Gl~~~~~~l~~~i~~~~~~~~~~~~~g~~~p~gvLL~GppGtGKT~lakaia~~l~~~~~~v~~~~l~- 193 (364)
T TIGR01242 115 ERPNVSYEDIGGLEEQIREIREAVELPLKHPELFEEVGIEPPKGVLLYGPPGTGKTLLAKAVAHETNATFIRVVGSELV- 193 (364)
T ss_pred cCCCCCHHHhCChHHHHHHHHHHHHHHhcCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhCCCCEEecchHHHH-
Confidence 56789999999999999999999876 8999999999999999999999999999999999999999999999999987
Q ss_pred hhhcccchhhHHHHHHHHHhcCCeEEEEcCccccccccccccCCCchhhHHHHHHHHhhhcccccCCeEEEEecccchhh
Q 035561 527 GLWVGQSASNVRELFQTARDLAPVIIFVEDFDLFAGVRGQFIHTKQQDHESFINQLLVELDGFEKQDGVVLMATTRNIKQ 606 (979)
Q Consensus 527 ~~~vG~~~~~Ir~lF~~A~~~aP~ILfIDEIDaL~~~r~~~~~~~~~~~~~iln~LL~~LDg~~~~~~ViVIATTN~pe~ 606 (979)
..+.|.+...++.+|..++...||||||||+|.++..+.....+......+.+.+++.+++++...+++.||+|||+++.
T Consensus 194 ~~~~g~~~~~i~~~f~~a~~~~p~il~iDEiD~l~~~~~~~~~~~~~~~~~~l~~ll~~ld~~~~~~~v~vI~ttn~~~~ 273 (364)
T TIGR01242 194 RKYIGEGARLVREIFELAKEKAPSIIFIDEIDAIAAKRTDSGTSGDREVQRTLMQLLAELDGFDPRGNVKVIAATNRPDI 273 (364)
T ss_pred HHhhhHHHHHHHHHHHHHHhcCCcEEEhhhhhhhccccccCCCCccHHHHHHHHHHHHHhhCCCCCCCEEEEEecCChhh
Confidence 67899999999999999999999999999999998776543334445567788899999999877788999999999999
Q ss_pred chhhhhcCCceeeEeccCCCCHHHHHHHHHHHHHhccchhhhhhhhHHHHHHHcCCCCHHHHHHHHHHHhhhhhc
Q 035561 607 IDEALQRPGRMDRIFNLQKPTQSEREKILRIAAQETMDEELIDLVDWRKVAEKTALLRPIELKLVPVALEGSAFR 681 (979)
Q Consensus 607 LDpALlRpgRFd~~I~~~~Pd~eeR~~IL~~~l~~~~~~~l~~dvdL~~LA~~T~GfsgaDL~~Lv~aa~~aa~r 681 (979)
+|++++||||||+.|+|+.|+.++|.+|++.++.+. ....++++..+|+.|+||+|+||.++|+.+...+++
T Consensus 274 ld~al~r~grfd~~i~v~~P~~~~r~~Il~~~~~~~---~l~~~~~~~~la~~t~g~sg~dl~~l~~~A~~~a~~ 345 (364)
T TIGR01242 274 LDPALLRPGRFDRIIEVPLPDFEGRLEILKIHTRKM---KLAEDVDLEAIAKMTEGASGADLKAICTEAGMFAIR 345 (364)
T ss_pred CChhhcCcccCceEEEeCCcCHHHHHHHHHHHHhcC---CCCccCCHHHHHHHcCCCCHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999998765 345668999999999999999999999877665544
No 33
>KOG0651 consensus 26S proteasome regulatory complex, ATPase RPT4 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=6.2e-35 Score=313.11 Aligned_cols=231 Identities=29% Similarity=0.448 Sum_probs=213.7
Q ss_pred cCCCCCCCCcccCcHHHHHHHHHHHHh-hcChhHHHhcCCCCCceeEecCCCCCChHHHHHHHHHHcCCCEEEeechhhh
Q 035561 447 VKNPPIPLKDFASVESMREEINEVVAF-LQNPSAFQEMGARAPRGVLIVGERGTGKTSLALAIAAEARVPVVNVEAQELE 525 (979)
Q Consensus 447 v~~~~~~f~DIvGleevke~L~eiV~~-L~~p~~f~~lG~~~P~gVLL~GPPGTGKTtLArAlA~elg~~~i~Is~sdL~ 525 (979)
.....++|+.+.|+-++..+|++.++. +.+|..|.+.|+.+|++++||||||||||.+|+++|+.++++|+.++.+.+.
T Consensus 124 e~~~~~s~~~~ggl~~qirelre~ielpl~np~lf~rvgIk~Pkg~ll~GppGtGKTlla~~Vaa~mg~nfl~v~ss~lv 203 (388)
T KOG0651|consen 124 EDPRNISFENVGGLFYQIRELREVIELPLTNPELFLRVGIKPPKGLLLYGPPGTGKTLLARAVAATMGVNFLKVVSSALV 203 (388)
T ss_pred cCccccCHHHhCChHHHHHHHHhheEeeccCchhccccCCCCCceeEEeCCCCCchhHHHHHHHHhcCCceEEeeHhhhh
Confidence 356678999999999999999999887 9999999999999999999999999999999999999999999999999998
Q ss_pred hhhhcccchhhHHHHHHHHHhcCCeEEEEcCccccccccccccCCCchhhHHHHHHHHhhhcccccCCeEEEEecccchh
Q 035561 526 AGLWVGQSASNVRELFQTARDLAPVIIFVEDFDLFAGVRGQFIHTKQQDHESFINQLLVELDGFEKQDGVVLMATTRNIK 605 (979)
Q Consensus 526 ~~~~vG~~~~~Ir~lF~~A~~~aP~ILfIDEIDaL~~~r~~~~~~~~~~~~~iln~LL~~LDg~~~~~~ViVIATTN~pe 605 (979)
+.|.|+++..+|+.|..|+...|||||+||||++++.+.+.....+++..+++-.|+.+||++.....|-+|.|||+|+
T Consensus 204 -~kyiGEsaRlIRemf~yA~~~~pciifmdeiDAigGRr~se~Ts~dreiqrTLMeLlnqmdgfd~l~rVk~ImatNrpd 282 (388)
T KOG0651|consen 204 -DKYIGESARLIRDMFRYAREVIPCIIFMDEIDAIGGRRFSEGTSSDREIQRTLMELLNQMDGFDTLHRVKTIMATNRPD 282 (388)
T ss_pred -hhhcccHHHHHHHHHHHHhhhCceEEeehhhhhhccEEeccccchhHHHHHHHHHHHHhhccchhcccccEEEecCCcc
Confidence 7899999999999999999999999999999999998876666777888999999999999999999999999999999
Q ss_pred hchhhhhcCCceeeEeccCCCCHHHHHHHHHHHHHhccchhhhhhhhHHHHHHHcCCCCHHHHHHHHHHHhhhhhc
Q 035561 606 QIDEALQRPGRMDRIFNLQKPTQSEREKILRIAAQETMDEELIDLVDWRKVAEKTALLRPIELKLVPVALEGSAFR 681 (979)
Q Consensus 606 ~LDpALlRpgRFd~~I~~~~Pd~eeR~~IL~~~l~~~~~~~l~~dvdL~~LA~~T~GfsgaDL~~Lv~aa~~aa~r 681 (979)
.|||+|+||||+|+.+++|.|+...|..|++.|.+.. .....+|.+.+.+.++||.|+|+.+.|.++-.-+++
T Consensus 283 tLdpaLlRpGRldrk~~iPlpne~~r~~I~Kih~~~i---~~~Geid~eaivK~~d~f~gad~rn~~tEag~Fa~~ 355 (388)
T KOG0651|consen 283 TLDPALLRPGRLDRKVEIPLPNEQARLGILKIHVQPI---DFHGEIDDEAILKLVDGFNGADLRNVCTEAGMFAIP 355 (388)
T ss_pred ccchhhcCCccccceeccCCcchhhceeeEeeccccc---cccccccHHHHHHHHhccChHHHhhhcccccccccc
Confidence 9999999999999999999999999999999998765 344567899999999999999999998776544443
No 34
>TIGR03689 pup_AAA proteasome ATPase. In the Actinobacteria, as shown for Mycobacterium tuberculosis, some proteins are modified by ligation between an epsilon-amino group of a lysine side chain and the C-terminal carboxylate of the ubiquitin-like protein Pup. This modification leads to protein degradation by the archaeal-like proteasome found in the Actinobacteria. Members of this protein family belong to the AAA family of ATPases and tend to be clustered with the genes for Pup, the Pup ligase PafA, and structural components of the proteasome. This protein forms hexameric rings with ATPase activity.
Probab=100.00 E-value=2.8e-33 Score=326.39 Aligned_cols=224 Identities=26% Similarity=0.443 Sum_probs=193.2
Q ss_pred hcccCCCCCCCCcccCcHHHHHHHHHHHHh-hcChhHHHhcCCCCCceeEecCCCCCChHHHHHHHHHHcCCC-------
Q 035561 444 MKRVKNPPIPLKDFASVESMREEINEVVAF-LQNPSAFQEMGARAPRGVLIVGERGTGKTSLALAIAAEARVP------- 515 (979)
Q Consensus 444 l~~v~~~~~~f~DIvGleevke~L~eiV~~-L~~p~~f~~lG~~~P~gVLL~GPPGTGKTtLArAlA~elg~~------- 515 (979)
+.-.+.|+++|+||+|+++.++.+++.+.. +.+|+.|..+|+++|+|+|||||||||||++|+++|++++.+
T Consensus 171 l~~~~~p~v~~~dIgGl~~~i~~i~~~v~lp~~~~~l~~~~gl~~p~GILLyGPPGTGKT~LAKAlA~eL~~~i~~~~~~ 250 (512)
T TIGR03689 171 LVLEEVPDVTYADIGGLDSQIEQIRDAVELPFLHPELYREYDLKPPKGVLLYGPPGCGKTLIAKAVANSLAQRIGAETGD 250 (512)
T ss_pred ceeecCCCCCHHHcCChHHHHHHHHHHHHHHhhCHHHHHhccCCCCcceEEECCCCCcHHHHHHHHHHhhccccccccCC
Confidence 334467889999999999999999998876 899999999999999999999999999999999999998654
Q ss_pred ---EEEeechhhhhhhhcccchhhHHHHHHHHHhc----CCeEEEEcCccccccccccccCCCchhhHHHHHHHHhhhcc
Q 035561 516 ---VVNVEAQELEAGLWVGQSASNVRELFQTARDL----APVIIFVEDFDLFAGVRGQFIHTKQQDHESFINQLLVELDG 588 (979)
Q Consensus 516 ---~i~Is~sdL~~~~~vG~~~~~Ir~lF~~A~~~----aP~ILfIDEIDaL~~~r~~~~~~~~~~~~~iln~LL~~LDg 588 (979)
|+.++++++. ++|.|+++..++.+|+.|+.. .||||||||+|.++++|+.. ..++....++++||.+||+
T Consensus 251 ~~~fl~v~~~eLl-~kyvGete~~ir~iF~~Ar~~a~~g~p~IIfIDEiD~L~~~R~~~--~s~d~e~~il~~LL~~LDg 327 (512)
T TIGR03689 251 KSYFLNIKGPELL-NKYVGETERQIRLIFQRAREKASDGRPVIVFFDEMDSIFRTRGSG--VSSDVETTVVPQLLSELDG 327 (512)
T ss_pred ceeEEeccchhhc-ccccchHHHHHHHHHHHHHHHhhcCCCceEEEehhhhhhcccCCC--ccchHHHHHHHHHHHHhcc
Confidence 6677778887 679999999999999999764 69999999999999887642 2233346788999999999
Q ss_pred cccCCeEEEEecccchhhchhhhhcCCceeeEeccCCCCHHHHHHHHHHHHHhccchhhhhhhhHHHHHHHcCCCCHHHH
Q 035561 589 FEKQDGVVLMATTRNIKQIDEALQRPGRMDRIFNLQKPTQSEREKILRIAAQETMDEELIDLVDWRKVAEKTALLRPIEL 668 (979)
Q Consensus 589 ~~~~~~ViVIATTN~pe~LDpALlRpgRFd~~I~~~~Pd~eeR~~IL~~~l~~~~~~~l~~dvdL~~LA~~T~GfsgaDL 668 (979)
+...++++||+|||+++.||||++||||||+.|+|+.|+.++|.+||+.++.... +. ...+..+.|++++++
T Consensus 328 l~~~~~ViVI~ATN~~d~LDpALlRpGRfD~~I~~~~Pd~e~r~~Il~~~l~~~l--~l------~~~l~~~~g~~~a~~ 399 (512)
T TIGR03689 328 VESLDNVIVIGASNREDMIDPAILRPGRLDVKIRIERPDAEAAADIFSKYLTDSL--PL------DADLAEFDGDREATA 399 (512)
T ss_pred cccCCceEEEeccCChhhCCHhhcCccccceEEEeCCCCHHHHHHHHHHHhhccC--Cc------hHHHHHhcCCCHHHH
Confidence 9888899999999999999999999999999999999999999999999987532 11 122345799999999
Q ss_pred HHHHHHHhhh
Q 035561 669 KLVPVALEGS 678 (979)
Q Consensus 669 ~~Lv~aa~~a 678 (979)
..+|+.+...
T Consensus 400 ~al~~~av~~ 409 (512)
T TIGR03689 400 AALIQRAVDH 409 (512)
T ss_pred HHHHHHHHHH
Confidence 9999876443
No 35
>KOG0741 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=9.9e-33 Score=310.79 Aligned_cols=235 Identities=26% Similarity=0.430 Sum_probs=203.2
Q ss_pred cCCCCCCCCc--ccCcHHHHHHH-HHH-HHhhcChhHHHhcCCCCCceeEecCCCCCChHHHHHHHHHHcC-CCEEEeec
Q 035561 447 VKNPPIPLKD--FASVESMREEI-NEV-VAFLQNPSAFQEMGARAPRGVLIVGERGTGKTSLALAIAAEAR-VPVVNVEA 521 (979)
Q Consensus 447 v~~~~~~f~D--IvGleevke~L-~ei-V~~L~~p~~f~~lG~~~P~gVLL~GPPGTGKTtLArAlA~elg-~~~i~Is~ 521 (979)
+..|.-.|++ |+|++.....+ ++. ....-.|+....+|++.-+|+|||||||||||++||.|.+-++ .+--.+++
T Consensus 211 ii~Pdf~Fe~mGIGGLd~EFs~IFRRAFAsRvFpp~vie~lGi~HVKGiLLyGPPGTGKTLiARqIGkMLNArePKIVNG 290 (744)
T KOG0741|consen 211 IINPDFNFESMGIGGLDKEFSDIFRRAFASRVFPPEVIEQLGIKHVKGILLYGPPGTGKTLIARQIGKMLNAREPKIVNG 290 (744)
T ss_pred ccCCCCChhhcccccchHHHHHHHHHHHHhhcCCHHHHHHcCccceeeEEEECCCCCChhHHHHHHHHHhcCCCCcccCc
Confidence 4567778887 56888654444 333 3336788889999999999999999999999999999999997 46677899
Q ss_pred hhhhhhhhcccchhhHHHHHHHHHhc--------CCeEEEEcCccccccccccccCCCchhhHHHHHHHHhhhcccccCC
Q 035561 522 QELEAGLWVGQSASNVRELFQTARDL--------APVIIFVEDFDLFAGVRGQFIHTKQQDHESFINQLLVELDGFEKQD 593 (979)
Q Consensus 522 sdL~~~~~vG~~~~~Ir~lF~~A~~~--------aP~ILfIDEIDaL~~~r~~~~~~~~~~~~~iln~LL~~LDg~~~~~ 593 (979)
.++. ++|+|++++++|.+|..|... .-.||++||||++|.+||+. .++...+.+++||||..|||.+.-+
T Consensus 291 PeIL-~KYVGeSE~NvR~LFaDAEeE~r~~g~~SgLHIIIFDEiDAICKqRGS~-~g~TGVhD~VVNQLLsKmDGVeqLN 368 (744)
T KOG0741|consen 291 PEIL-NKYVGESEENVRKLFADAEEEQRRLGANSGLHIIIFDEIDAICKQRGSM-AGSTGVHDTVVNQLLSKMDGVEQLN 368 (744)
T ss_pred HHHH-HHhhcccHHHHHHHHHhHHHHHHhhCccCCceEEEehhhHHHHHhcCCC-CCCCCccHHHHHHHHHhcccHHhhh
Confidence 9998 899999999999999999532 13699999999999999864 3445678899999999999999999
Q ss_pred eEEEEecccchhhchhhhhcCCceeeEeccCCCCHHHHHHHHHHHHHhcc-chhhhhhhhHHHHHHHcCCCCHHHHHHHH
Q 035561 594 GVVLMATTRNIKQIDEALQRPGRMDRIFNLQKPTQSEREKILRIAAQETM-DEELIDLVDWRKVAEKTALLRPIELKLVP 672 (979)
Q Consensus 594 ~ViVIATTN~pe~LDpALlRpgRFd~~I~~~~Pd~eeR~~IL~~~l~~~~-~~~l~~dvdL~~LA~~T~GfsgaDL~~Lv 672 (979)
+++||+-||+.+.||+||+|||||..++++..||+..|.+||+.|.++.. ...+.+++|+++||..|..|||++|+-|+
T Consensus 369 NILVIGMTNR~DlIDEALLRPGRlEVqmEIsLPDE~gRlQIl~IHT~rMre~~~l~~dVdl~elA~lTKNfSGAEleglV 448 (744)
T KOG0741|consen 369 NILVIGMTNRKDLIDEALLRPGRLEVQMEISLPDEKGRLQILKIHTKRMRENNKLSADVDLKELAALTKNFSGAELEGLV 448 (744)
T ss_pred cEEEEeccCchhhHHHHhcCCCceEEEEEEeCCCccCceEEEEhhhhhhhhcCCCCCCcCHHHHHHHhcCCchhHHHHHH
Confidence 99999999999999999999999999999999999999999999987642 23567899999999999999999999999
Q ss_pred HHHhhhhhccC
Q 035561 673 VALEGSAFRSK 683 (979)
Q Consensus 673 ~aa~~aa~r~~ 683 (979)
++++..|+.+.
T Consensus 449 ksA~S~A~nR~ 459 (744)
T KOG0741|consen 449 KSAQSFAMNRH 459 (744)
T ss_pred HHHHHHHHHhh
Confidence 99998887653
No 36
>KOG0732 consensus AAA+-type ATPase containing the bromodomain [Posttranslational modification, protein turnover, chaperones]
Probab=99.97 E-value=1.5e-31 Score=324.46 Aligned_cols=260 Identities=30% Similarity=0.454 Sum_probs=227.9
Q ss_pred CCCCCCCcccCcHHHHHHHHHHHHh-hcChhHHHhcCCCCCceeEecCCCCCChHHHHHHHHHHc-----CCCEEEeech
Q 035561 449 NPPIPLKDFASVESMREEINEVVAF-LQNPSAFQEMGARAPRGVLIVGERGTGKTSLALAIAAEA-----RVPVVNVEAQ 522 (979)
Q Consensus 449 ~~~~~f~DIvGleevke~L~eiV~~-L~~p~~f~~lG~~~P~gVLL~GPPGTGKTtLArAlA~el-----g~~~i~Is~s 522 (979)
...+.|++|+|++.++..|++.|.. |..|+.|..+++.+|+|+|++||||||||+.|+++|..+ .+.|+.-++.
T Consensus 259 ~~~v~fd~vggl~~~i~~LKEmVl~PLlyPE~f~~~~itpPrgvL~~GppGTGkTl~araLa~~~s~~~~kisffmrkga 338 (1080)
T KOG0732|consen 259 DSSVGFDSVGGLENYINQLKEMVLLPLLYPEFFDNFNITPPRGVLFHGPPGTGKTLMARALAAACSRGNRKISFFMRKGA 338 (1080)
T ss_pred hcccCccccccHHHHHHHHHHHHHhHhhhhhHhhhcccCCCcceeecCCCCCchhHHHHhhhhhhcccccccchhhhcCc
Confidence 4568999999999999999999988 999999999999999999999999999999999999988 3677888888
Q ss_pred hhhhhhhcccchhhHHHHHHHHHhcCCeEEEEcCccccccccccccCCCchhhHHHHHHHHhhhcccccCCeEEEEeccc
Q 035561 523 ELEAGLWVGQSASNVRELFQTARDLAPVIIFVEDFDLFAGVRGQFIHTKQQDHESFINQLLVELDGFEKQDGVVLMATTR 602 (979)
Q Consensus 523 dL~~~~~vG~~~~~Ir~lF~~A~~~aP~ILfIDEIDaL~~~r~~~~~~~~~~~~~iln~LL~~LDg~~~~~~ViVIATTN 602 (979)
+.. ++|+|+.+..++-+|++|+++.|+|+|+||||.|++.|+. ...+.+..++..||..|||+...+.|+||+|||
T Consensus 339 D~l-skwvgEaERqlrllFeeA~k~qPSIIffdeIdGlapvrSs---kqEqih~SIvSTLLaLmdGldsRgqVvvigATn 414 (1080)
T KOG0732|consen 339 DCL-SKWVGEAERQLRLLFEEAQKTQPSIIFFDEIDGLAPVRSS---KQEQIHASIVSTLLALMDGLDSRGQVVVIGATN 414 (1080)
T ss_pred hhh-ccccCcHHHHHHHHHHHHhccCceEEeccccccccccccc---hHHHhhhhHHHHHHHhccCCCCCCceEEEcccC
Confidence 887 8899999999999999999999999999999999998863 344567889999999999999999999999999
Q ss_pred chhhchhhhhcCCceeeEeccCCCCHHHHHHHHHHHHHhccchhhhhhhhHHHHHHHcCCCCHHHHHHHHHHHhhhhhcc
Q 035561 603 NIKQIDEALQRPGRMDRIFNLQKPTQSEREKILRIAAQETMDEELIDLVDWRKVAEKTALLRPIELKLVPVALEGSAFRS 682 (979)
Q Consensus 603 ~pe~LDpALlRpgRFd~~I~~~~Pd~eeR~~IL~~~l~~~~~~~l~~dvdL~~LA~~T~GfsgaDL~~Lv~aa~~aa~r~ 682 (979)
+|+.+||||+||||||++++|+.|+.+.|.+|+..|..+-. +.....-+..||+.|.||.|+||+.+|..+...++++
T Consensus 415 Rpda~dpaLRRPgrfdref~f~lp~~~ar~~Il~Ihtrkw~--~~i~~~l~~~la~~t~gy~gaDlkaLCTeAal~~~~r 492 (1080)
T KOG0732|consen 415 RPDAIDPALRRPGRFDREFYFPLPDVDARAKILDIHTRKWE--PPISRELLLWLAEETSGYGGADLKALCTEAALIALRR 492 (1080)
T ss_pred CccccchhhcCCcccceeEeeeCCchHHHHHHHHHhccCCC--CCCCHHHHHHHHHhccccchHHHHHHHHHHhhhhhcc
Confidence 99999999999999999999999999999999999987653 3344556789999999999999999998777766664
Q ss_pred CC-----------CChH-HHhhhcchhhhccCCCccccccchhh
Q 035561 683 KF-----------LDTD-ELMSYCGWFATFSGVVPKWFRKTKIV 714 (979)
Q Consensus 683 ~~-----------~s~~-ei~~~~d~~aAl~~~~P~~lR~~~ll 714 (979)
.. +... .-.+.++|..|.....|+.-|...+.
T Consensus 493 ~~Pq~y~s~~kl~~d~~~ikV~~~~f~~A~~~i~ps~~R~~~~~ 536 (1080)
T KOG0732|consen 493 SFPQIYSSSDKLLIDVALIKVEVRDFVEAMSRITPSSRRSSVIF 536 (1080)
T ss_pred ccCeeecccccccccchhhhhhhHhhhhhhhccCCCCCccccCC
Confidence 31 1111 12566799999999999998865543
No 37
>PLN00020 ribulose bisphosphate carboxylase/oxygenase activase -RuBisCO activase (RCA); Provisional
Probab=99.97 E-value=1.2e-30 Score=289.54 Aligned_cols=200 Identities=19% Similarity=0.261 Sum_probs=162.5
Q ss_pred CCCCcc-cCcHHHHHHHHHHHHhhcChhHHHhcCCCCCceeEecCCCCCChHHHHHHHHHHcCCCEEEeechhhhhhhhc
Q 035561 452 IPLKDF-ASVESMREEINEVVAFLQNPSAFQEMGARAPRGVLIVGERGTGKTSLALAIAAEARVPVVNVEAQELEAGLWV 530 (979)
Q Consensus 452 ~~f~DI-vGleevke~L~eiV~~L~~p~~f~~lG~~~P~gVLL~GPPGTGKTtLArAlA~elg~~~i~Is~sdL~~~~~v 530 (979)
.+|+++ .|+--.+..+..+...+... ....+|+++|++++||||||||||++|+++|+++|++++.++++++. ++|+
T Consensus 112 ~~f~~~~g~~~~~p~f~dk~~~hi~kn-~l~~~~ik~PlgllL~GPPGcGKTllAraiA~elg~~~i~vsa~eL~-sk~v 189 (413)
T PLN00020 112 RSFDNLVGGYYIAPAFMDKVAVHIAKN-FLALPNIKVPLILGIWGGKGQGKSFQCELVFKKMGIEPIVMSAGELE-SENA 189 (413)
T ss_pred cchhhhcCccccCHHHHHHHHHHHHhh-hhhccCCCCCeEEEeeCCCCCCHHHHHHHHHHHcCCCeEEEEHHHhh-cCcC
Confidence 467777 56666666666554432111 12336899999999999999999999999999999999999999998 7899
Q ss_pred ccchhhHHHHHHHHHhc-----CCeEEEEcCccccccccccccCCCchhhHHHH-HHHHhhhccc------------ccC
Q 035561 531 GQSASNVRELFQTARDL-----APVIIFVEDFDLFAGVRGQFIHTKQQDHESFI-NQLLVELDGF------------EKQ 592 (979)
Q Consensus 531 G~~~~~Ir~lF~~A~~~-----aP~ILfIDEIDaL~~~r~~~~~~~~~~~~~il-n~LL~~LDg~------------~~~ 592 (979)
|++++.+|++|..|+.. +||||||||||++++.|+. .......+++ .+|+++||+. +..
T Consensus 190 GEsEk~IR~~F~~A~~~a~~~~aPcVLFIDEIDA~~g~r~~---~~~tv~~qiV~~tLLnl~D~p~~v~l~G~w~~~~~~ 266 (413)
T PLN00020 190 GEPGKLIRQRYREAADIIKKKGKMSCLFINDLDAGAGRFGT---TQYTVNNQMVNGTLMNIADNPTNVSLGGDWREKEEI 266 (413)
T ss_pred CcHHHHHHHHHHHHHHHhhccCCCeEEEEehhhhcCCCCCC---CCcchHHHHHHHHHHHHhcCCccccccccccccccC
Confidence 99999999999999754 6999999999999998863 2223334555 6899988863 345
Q ss_pred CeEEEEecccchhhchhhhhcCCceeeEeccCCCCHHHHHHHHHHHHHhccchhhhhhhhHHHHHHHcCC
Q 035561 593 DGVVLMATTRNIKQIDEALQRPGRMDRIFNLQKPTQSEREKILRIAAQETMDEELIDLVDWRKVAEKTAL 662 (979)
Q Consensus 593 ~~ViVIATTN~pe~LDpALlRpgRFd~~I~~~~Pd~eeR~~IL~~~l~~~~~~~l~~dvdL~~LA~~T~G 662 (979)
.+|+||+|||+|+.|||+|+||||||+.+ ..|+.++|.+||+.++++. . .+.+|+..|+..++|
T Consensus 267 ~~V~VIaTTNrpd~LDpALlRpGRfDk~i--~lPd~e~R~eIL~~~~r~~---~-l~~~dv~~Lv~~f~g 330 (413)
T PLN00020 267 PRVPIIVTGNDFSTLYAPLIRDGRMEKFY--WAPTREDRIGVVHGIFRDD---G-VSREDVVKLVDTFPG 330 (413)
T ss_pred CCceEEEeCCCcccCCHhHcCCCCCCcee--CCCCHHHHHHHHHHHhccC---C-CCHHHHHHHHHcCCC
Confidence 67999999999999999999999999975 4899999999999999874 2 235788888888877
No 38
>KOG0740 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.97 E-value=2e-30 Score=293.71 Aligned_cols=226 Identities=27% Similarity=0.424 Sum_probs=202.5
Q ss_pred CCCCCCCCcccCcHHHHHHHHHHHHh-hcChhHHHhcCCCC-CceeEecCCCCCChHHHHHHHHHHcCCCEEEeechhhh
Q 035561 448 KNPPIPLKDFASVESMREEINEVVAF-LQNPSAFQEMGARA-PRGVLIVGERGTGKTSLALAIAAEARVPVVNVEAQELE 525 (979)
Q Consensus 448 ~~~~~~f~DIvGleevke~L~eiV~~-L~~p~~f~~lG~~~-P~gVLL~GPPGTGKTtLArAlA~elg~~~i~Is~sdL~ 525 (979)
..+++.|+|+.|++.+|+.+.+.+.+ +..|..|. |++. ++|+||.||||||||+|++|||.|.+..|+.++++.+.
T Consensus 146 ~~~~v~~~di~gl~~~k~~l~e~vi~p~lr~d~F~--glr~p~rglLLfGPpgtGKtmL~~aiAsE~~atff~iSassLt 223 (428)
T KOG0740|consen 146 TLRNVGWDDIAGLEDAKQSLKEAVILPLLRPDLFL--GLREPVRGLLLFGPPGTGKTMLAKAIATESGATFFNISASSLT 223 (428)
T ss_pred cCCcccccCCcchhhHHHHhhhhhhhcccchHhhh--ccccccchhheecCCCCchHHHHHHHHhhhcceEeeccHHHhh
Confidence 45679999999999999999999888 77899887 5544 58999999999999999999999999999999999998
Q ss_pred hhhhcccchhhHHHHHHHHHhcCCeEEEEcCccccccccccccCCCchhhHHHHHHHHhhhcccc--cCCeEEEEecccc
Q 035561 526 AGLWVGQSASNVRELFQTARDLAPVIIFVEDFDLFAGVRGQFIHTKQQDHESFINQLLVELDGFE--KQDGVVLMATTRN 603 (979)
Q Consensus 526 ~~~~vG~~~~~Ir~lF~~A~~~aP~ILfIDEIDaL~~~r~~~~~~~~~~~~~iln~LL~~LDg~~--~~~~ViVIATTN~ 603 (979)
++|+|++++.+|.+|.-|+..+|+|+||||+|.++.+|. ...++...+...++|.++++.. ..++|+||||||+
T Consensus 224 -sK~~Ge~eK~vralf~vAr~~qPsvifidEidslls~Rs---~~e~e~srr~ktefLiq~~~~~s~~~drvlvigaTN~ 299 (428)
T KOG0740|consen 224 -SKYVGESEKLVRALFKVARSLQPSVIFIDEIDSLLSKRS---DNEHESSRRLKTEFLLQFDGKNSAPDDRVLVIGATNR 299 (428)
T ss_pred -hhccChHHHHHHHHHHHHHhcCCeEEEechhHHHHhhcC---CcccccchhhhhHHHhhhccccCCCCCeEEEEecCCC
Confidence 899999999999999999999999999999999999884 3455666788888888888863 3468999999999
Q ss_pred hhhchhhhhcCCceeeEeccCCCCHHHHHHHHHHHHHhccchhhhhhhhHHHHHHHcCCCCHHHHHHHHHHHhhhhhccC
Q 035561 604 IKQIDEALQRPGRMDRIFNLQKPTQSEREKILRIAAQETMDEELIDLVDWRKVAEKTALLRPIELKLVPVALEGSAFRSK 683 (979)
Q Consensus 604 pe~LDpALlRpgRFd~~I~~~~Pd~eeR~~IL~~~l~~~~~~~l~~dvdL~~LA~~T~GfsgaDL~~Lv~aa~~aa~r~~ 683 (979)
|+.+|.+++| ||...+++|.|+.+.|..+|+..+++. .....+.|++.||+.|+||+++||.++|..+.....+..
T Consensus 300 P~e~Dea~~R--rf~kr~yiplPd~etr~~~~~~ll~~~--~~~l~~~d~~~l~~~Tegysgsdi~~l~kea~~~p~r~~ 375 (428)
T KOG0740|consen 300 PWELDEAARR--RFVKRLYIPLPDYETRSLLWKQLLKEQ--PNGLSDLDISLLAKVTEGYSGSDITALCKEAAMGPLREL 375 (428)
T ss_pred chHHHHHHHH--HhhceeeecCCCHHHHHHHHHHHHHhC--CCCccHHHHHHHHHHhcCcccccHHHHHHHhhcCchhhc
Confidence 9999999999 999999999999999999999999876 245667899999999999999999999988877665543
No 39
>KOG0735 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.96 E-value=6.8e-29 Score=287.32 Aligned_cols=319 Identities=20% Similarity=0.240 Sum_probs=252.9
Q ss_pred CcccCcHHHHHHHHHHHHhhcChhHHHhcCCCCCceeEecCCCCCChHHHHHHHHHHcC----CCEEEeechhhhhhhhc
Q 035561 455 KDFASVESMREEINEVVAFLQNPSAFQEMGARAPRGVLIVGERGTGKTSLALAIAAEAR----VPVVNVEAQELEAGLWV 530 (979)
Q Consensus 455 ~DIvGleevke~L~eiV~~L~~p~~f~~lG~~~P~gVLL~GPPGTGKTtLArAlA~elg----~~~i~Is~sdL~~~~~v 530 (979)
.|++-..+.|++..+ ....| +..+.+|||+||+|||||.|+++++.++. +++..++|+.+-.+ -.
T Consensus 408 ~d~i~~~s~kke~~n---~~~sp-------v~~~~~Ill~G~~GsGKT~L~kal~~~~~k~~~~hv~~v~Cs~l~~~-~~ 476 (952)
T KOG0735|consen 408 HDFIQVPSYKKENAN---QELSP-------VFRHGNILLNGPKGSGKTNLVKALFDYYSKDLIAHVEIVSCSTLDGS-SL 476 (952)
T ss_pred Cceeecchhhhhhhh---hhccc-------ccccccEEEeCCCCCCHhHHHHHHHHHhccccceEEEEEechhccch-hH
Confidence 677878887777654 22222 34467899999999999999999999984 57888999988633 36
Q ss_pred ccchhhHHHHHHHHHhcCCeEEEEcCccccccccccccCCCchhhHHHHHHHHhh-hccc-ccCCeEEEEecccchhhch
Q 035561 531 GQSASNVRELFQTARDLAPVIIFVEDFDLFAGVRGQFIHTKQQDHESFINQLLVE-LDGF-EKQDGVVLMATTRNIKQID 608 (979)
Q Consensus 531 G~~~~~Ir~lF~~A~~~aP~ILfIDEIDaL~~~r~~~~~~~~~~~~~iln~LL~~-LDg~-~~~~~ViVIATTN~pe~LD 608 (979)
....+.++.+|..|.+++|+||++|++|.|++..+. .++........++.++.. +..| ..+..+.+|||.+....|+
T Consensus 477 e~iQk~l~~vfse~~~~~PSiIvLDdld~l~~~s~~-e~~q~~~~~~rla~flnqvi~~y~~~~~~ia~Iat~qe~qtl~ 555 (952)
T KOG0735|consen 477 EKIQKFLNNVFSEALWYAPSIIVLDDLDCLASASSN-ENGQDGVVSERLAAFLNQVIKIYLKRNRKIAVIATGQELQTLN 555 (952)
T ss_pred HHHHHHHHHHHHHHHhhCCcEEEEcchhhhhccCcc-cCCcchHHHHHHHHHHHHHHHHHHccCcEEEEEEechhhhhcC
Confidence 667778999999999999999999999999873322 122333334445555533 3333 3455689999999999999
Q ss_pred hhhhcCCceeeEeccCCCCHHHHHHHHHHHHHhccchhhhhhhhHHHHHHHcCCCCHHHHHHHHHHHhhhhhccCCCChH
Q 035561 609 EALQRPGRMDRIFNLQKPTQSEREKILRIAAQETMDEELIDLVDWRKVAEKTALLRPIELKLVPVALEGSAFRSKFLDTD 688 (979)
Q Consensus 609 pALlRpgRFd~~I~~~~Pd~eeR~~IL~~~l~~~~~~~l~~dvdL~~LA~~T~GfsgaDL~~Lv~aa~~aa~r~~~~s~~ 688 (979)
|.|.+|++|+.++.+++|+..+|.+||+..+++.......++.|+ ++..|+||...||..++.++-..++.....+..
T Consensus 556 ~~L~s~~~Fq~~~~L~ap~~~~R~~IL~~~~s~~~~~~~~~dLd~--ls~~TEGy~~~DL~ifVeRai~~a~leris~~~ 633 (952)
T KOG0735|consen 556 PLLVSPLLFQIVIALPAPAVTRRKEILTTIFSKNLSDITMDDLDF--LSVKTEGYLATDLVIFVERAIHEAFLERISNGP 633 (952)
T ss_pred hhhcCccceEEEEecCCcchhHHHHHHHHHHHhhhhhhhhHHHHH--HHHhcCCccchhHHHHHHHHHHHHHHHHhccCc
Confidence 999999999999999999999999999999988754444555555 999999999999999998877777743222222
Q ss_pred HHhhhcchhhhccCCCccccccchhhhhhhhhhhhhcCccccHHHHHHHHHhhhccccccccccccCCCCccccccccch
Q 035561 689 ELMSYCGWFATFSGVVPKWFRKTKIVKKISRMLVDHLGLTLTKEDLQNVVDLMEPYGQISNGIELLTPPLDWTRETKLPH 768 (979)
Q Consensus 689 ei~~~~d~~aAl~~~~P~~lR~~~llk~~~v~w~DiGGl~vtkedL~eAIe~~~kyg~i~aG~e~~sp~l~~~~eek~~i 768 (979)
-+++-.+|..++++|.|.+||+++..+..+..|.|+||+...++.++++++||.||.++++.++++.+...+ ..
T Consensus 634 klltke~f~ksL~~F~P~aLR~ik~~k~tgi~w~digg~~~~k~~l~~~i~~P~kyp~if~~~plr~~~giL------Ly 707 (952)
T KOG0735|consen 634 KLLTKELFEKSLKDFVPLALRGIKLVKSTGIRWEDIGGLFEAKKVLEEVIEWPSKYPQIFANCPLRLRTGIL------LY 707 (952)
T ss_pred ccchHHHHHHHHHhcChHHhhhccccccCCCCceecccHHHHHHHHHHHHhccccchHHHhhCCcccccceE------EE
Confidence 277788999999999999999999999999999999999999999999999999999988888777665532 35
Q ss_pred hhhhhhHHHHHhhcCCCCccceEEe
Q 035561 769 AVWAAGRGLIALLLPNFDTVDNLWL 793 (979)
Q Consensus 769 AyHEAGHALVa~lLp~~dpV~kVtI 793 (979)
.|--+|..+++-.+....++..|++
T Consensus 708 GppGcGKT~la~a~a~~~~~~fisv 732 (952)
T KOG0735|consen 708 GPPGCGKTLLASAIASNSNLRFISV 732 (952)
T ss_pred CCCCCcHHHHHHHHHhhCCeeEEEe
Confidence 6666899988887766667776665
No 40
>KOG0736 consensus Peroxisome assembly factor 2 containing the AAA+-type ATPase domain [Posttranslational modification, protein turnover, chaperones]
Probab=99.95 E-value=2.3e-28 Score=285.34 Aligned_cols=284 Identities=20% Similarity=0.253 Sum_probs=229.9
Q ss_pred CCCceeEecCCCCCChHHHHHHHHHHcCCCEEEeechhhhhhhhcccchhhHHHHHHHHHhcCCeEEEEcCccccccccc
Q 035561 486 RAPRGVLIVGERGTGKTSLALAIAAEARVPVVNVEAQELEAGLWVGQSASNVRELFQTARDLAPVIIFVEDFDLFAGVRG 565 (979)
Q Consensus 486 ~~P~gVLL~GPPGTGKTtLArAlA~elg~~~i~Is~sdL~~~~~vG~~~~~Ir~lF~~A~~~aP~ILfIDEIDaL~~~r~ 565 (979)
.....+||+|+||||||++++++|+++|.|++.++|.+++++ -.+.++.++...|..|+.+.|+|||+-++|.++.+++
T Consensus 429 ~~~~~vLLhG~~g~GK~t~V~~vas~lg~h~~evdc~el~~~-s~~~~etkl~~~f~~a~~~~pavifl~~~dvl~id~d 507 (953)
T KOG0736|consen 429 TLNPSVLLHGPPGSGKTTVVRAVASELGLHLLEVDCYELVAE-SASHTETKLQAIFSRARRCSPAVLFLRNLDVLGIDQD 507 (953)
T ss_pred ccceEEEEeCCCCCChHHHHHHHHHHhCCceEeccHHHHhhc-ccchhHHHHHHHHHHHhhcCceEEEEeccceeeecCC
Confidence 334569999999999999999999999999999999999854 4788999999999999999999999999999985543
Q ss_pred cccCCCchhhHHHHHHHHhhhcccc-cCCeEEEEecccchhhchhhhhcCCceeeEeccCCCCHHHHHHHHHHHHHhccc
Q 035561 566 QFIHTKQQDHESFINQLLVELDGFE-KQDGVVLMATTRNIKQIDEALQRPGRMDRIFNLQKPTQSEREKILRIAAQETMD 644 (979)
Q Consensus 566 ~~~~~~~~~~~~iln~LL~~LDg~~-~~~~ViVIATTN~pe~LDpALlRpgRFd~~I~~~~Pd~eeR~~IL~~~l~~~~~ 644 (979)
+ +..-.....++.++. +|.+. +..+++|+|||++.+.+++.+++ .|-++|.++.|+.++|.+||+.++...
T Consensus 508 g---ged~rl~~~i~~~ls-~e~~~~~~~~~ivv~t~~s~~~lp~~i~~--~f~~ei~~~~lse~qRl~iLq~y~~~~-- 579 (953)
T KOG0736|consen 508 G---GEDARLLKVIRHLLS-NEDFKFSCPPVIVVATTSSIEDLPADIQS--LFLHEIEVPALSEEQRLEILQWYLNHL-- 579 (953)
T ss_pred C---chhHHHHHHHHHHHh-cccccCCCCceEEEEeccccccCCHHHHH--hhhhhccCCCCCHHHHHHHHHHHHhcc--
Confidence 2 333334455555554 44443 56789999999999999999999 888999999999999999999999876
Q ss_pred hhhhhhhhHHHHHHHcCCCCHHHHHHHHHHHhhhhh---ccCC-------------CChHHHhhhcchhhhccCCCcccc
Q 035561 645 EELIDLVDWRKVAEKTALLRPIELKLVPVALEGSAF---RSKF-------------LDTDELMSYCGWFATFSGVVPKWF 708 (979)
Q Consensus 645 ~~l~~dvdL~~LA~~T~GfsgaDL~~Lv~aa~~aa~---r~~~-------------~s~~ei~~~~d~~aAl~~~~P~~l 708 (979)
...+++.++.+|++|+||+.+||..++..+..++. .+.. .....+..+.||..+++..+....
T Consensus 580 -~~n~~v~~k~~a~~t~gfs~~~L~~l~~~~s~~~~~~i~~~~l~g~~~~~~~~~~~~~~~~l~~edf~kals~~~~~fs 658 (953)
T KOG0736|consen 580 -PLNQDVNLKQLARKTSGFSFGDLEALVAHSSLAAKTRIKNKGLAGGLQEEDEGELCAAGFLLTEEDFDKALSRLQKEFS 658 (953)
T ss_pred -ccchHHHHHHHHHhcCCCCHHHHHHHhcCchHHHHHHHHhhcccccchhccccccccccceecHHHHHHHHHHHHHhhh
Confidence 67789999999999999999999999744311111 1111 111234667789999998888888
Q ss_pred ccchhhhhhhhhhhhhcCccccHHHHHHHHHhhhccccc-------cccccccCCCCccccccccchhhhhhhHHHHHhh
Q 035561 709 RKTKIVKKISRMLVDHLGLTLTKEDLQNVVDLMEPYGQI-------SNGIELLTPPLDWTRETKLPHAVWAAGRGLIALL 781 (979)
Q Consensus 709 R~~~llk~~~v~w~DiGGl~vtkedL~eAIe~~~kyg~i-------~aG~e~~sp~l~~~~eek~~iAyHEAGHALVa~l 781 (979)
..++++++|++.|+|+||++.+|.+|+++|+.|.++... .+|+.+++||+ .|..|+|..
T Consensus 659 ~aiGAPKIPnV~WdDVGGLeevK~eIldTIqlPL~hpeLfssglrkRSGILLYGPPG--------------TGKTLlAKA 724 (953)
T KOG0736|consen 659 DAIGAPKIPNVSWDDVGGLEEVKTEILDTIQLPLKHPELFSSGLRKRSGILLYGPPG--------------TGKTLLAKA 724 (953)
T ss_pred hhcCCCCCCccchhcccCHHHHHHHHHHHhcCcccChhhhhccccccceeEEECCCC--------------CchHHHHHH
Confidence 899999999999999999999999999999998887643 56777888887 488888887
Q ss_pred cCCCCccceEEe
Q 035561 782 LPNFDTVDNLWL 793 (979)
Q Consensus 782 Lp~~dpV~kVtI 793 (979)
...-..+..+|+
T Consensus 725 VATEcsL~FlSV 736 (953)
T KOG0736|consen 725 VATECSLNFLSV 736 (953)
T ss_pred HHhhceeeEEee
Confidence 654444555544
No 41
>COG0464 SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones]
Probab=99.88 E-value=1.1e-21 Score=230.98 Aligned_cols=296 Identities=27% Similarity=0.404 Sum_probs=245.4
Q ss_pred hcChhHHHhcCCCCCceeEecCCCCCChHHHHHHHHHHcCCCEEEeechhhhhhhhcccchhhHHHHHHHHHhcCCeEEE
Q 035561 474 LQNPSAFQEMGARAPRGVLIVGERGTGKTSLALAIAAEARVPVVNVEAQELEAGLWVGQSASNVRELFQTARDLAPVIIF 553 (979)
Q Consensus 474 L~~p~~f~~lG~~~P~gVLL~GPPGTGKTtLArAlA~elg~~~i~Is~sdL~~~~~vG~~~~~Ir~lF~~A~~~aP~ILf 553 (979)
+..+..+..++..+|++++++||||||||++++++|.+ +.++..+++.+.. .++.|..+...+.+|..+...+|++++
T Consensus 4 ~~~~~~~~~~~~~~~~~v~~~g~~~~~~t~~~~~~a~~-~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~a~~~~~~ii~ 81 (494)
T COG0464 4 LKEPELFKKLGIEPPKGVLLHGPPGTGKTLLARALANE-GAEFLSINGPEIL-SKYVGESELRLRELFEEAEKLAPSIIF 81 (494)
T ss_pred ccCHHHHHHhCCCCCCCceeeCCCCCchhHHHHHHHhc-cCcccccCcchhh-hhhhhHHHHHHHHHHHHHHHhCCCeEe
Confidence 45677888999999999999999999999999999999 7666888888887 778999999999999999999999999
Q ss_pred EcCccccccccccccCCCchhhHHHHHHHHhhhcccccCCeEEEEecccchhhchhhhhcCCceeeEeccCCCCHHHHHH
Q 035561 554 VEDFDLFAGVRGQFIHTKQQDHESFINQLLVELDGFEKQDGVVLMATTRNIKQIDEALQRPGRMDRIFNLQKPTQSEREK 633 (979)
Q Consensus 554 IDEIDaL~~~r~~~~~~~~~~~~~iln~LL~~LDg~~~~~~ViVIATTN~pe~LDpALlRpgRFd~~I~~~~Pd~eeR~~ 633 (979)
+||+|.+.+.+.. ........++.+++..++++.... +++++.||++..+++++++||||+..+.++.|+...+.+
T Consensus 82 ~d~~~~~~~~~~~---~~~~~~~~v~~~l~~~~d~~~~~~-v~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~e 157 (494)
T COG0464 82 IDEIDALAPKRSS---DQGEVERRVVAQLLALMDGLKRGQ-VIVIGATNRPDGLDPAKRRPGRFDREIEVNLPDEAGRLE 157 (494)
T ss_pred echhhhcccCccc---cccchhhHHHHHHHHhcccccCCc-eEEEeecCCccccChhHhCccccceeeecCCCCHHHHHH
Confidence 9999999988864 334456788999999999998555 999999999999999999999999999999999999999
Q ss_pred HHHHHHHhccchhhhhhhhHHHHHHHcCCCCHHHHHHHHHHHhhhhhccC--CCChHHHhhhcchhhhccCCCccccccc
Q 035561 634 ILRIAAQETMDEELIDLVDWRKVAEKTALLRPIELKLVPVALEGSAFRSK--FLDTDELMSYCGWFATFSGVVPKWFRKT 711 (979)
Q Consensus 634 IL~~~l~~~~~~~l~~dvdL~~LA~~T~GfsgaDL~~Lv~aa~~aa~r~~--~~s~~ei~~~~d~~aAl~~~~P~~lR~~ 711 (979)
|++.+.... ....+.++..++..+.|++++|+..+|..+...+.++. ........+..++..+++.+.|+ +.+
T Consensus 158 i~~~~~~~~---~~~~~~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~l~~~~~~--~~~ 232 (494)
T COG0464 158 ILQIHTRLM---FLGPPGTGKTLAARTVGKSGADLGALAKEAALRELRRAIDLVGEYIGVTEDDFEEALKKVLPS--RGV 232 (494)
T ss_pred HHHHHHhcC---CCcccccHHHHHHhcCCccHHHHHHHHHHHHHHHHHhhhccCcccccccHHHHHHHHHhcCcc--ccc
Confidence 999998765 33447899999999999999999999977766666553 23334456677888889988887 333
Q ss_pred hhhhhhhhhhhhhcCccccHHHHHHHHHhhhccccc--------cccccccCCCCccccccccchhhhhhhHHHHHhhcC
Q 035561 712 KIVKKISRMLVDHLGLTLTKEDLQNVVDLMEPYGQI--------SNGIELLTPPLDWTRETKLPHAVWAAGRGLIALLLP 783 (979)
Q Consensus 712 ~llk~~~v~w~DiGGl~vtkedL~eAIe~~~kyg~i--------~aG~e~~sp~l~~~~eek~~iAyHEAGHALVa~lLp 783 (979)
....+++.|.|+||+...++.+.++++++.+|... ..|+-+++||. .|..++|..+.
T Consensus 233 -~~~~~~v~~~diggl~~~k~~l~e~v~~~~~~~e~~~~~~~~~~~giLl~GpPG--------------tGKT~lAkava 297 (494)
T COG0464 233 -LFEDEDVTLDDIGGLEEAKEELKEAIETPLKRPELFRKLGLRPPKGVLLYGPPG--------------TGKTLLAKAVA 297 (494)
T ss_pred -ccCCCCcceehhhcHHHHHHHHHHHHHhHhhChHHHHhcCCCCCCeeEEECCCC--------------CCHHHHHHHHH
Confidence 46778999999999999999999999998877652 33667778877 46666666655
Q ss_pred CCCccceEEeec
Q 035561 784 NFDTVDNLWLEP 795 (979)
Q Consensus 784 ~~dpV~kVtIiP 795 (979)
.......+++..
T Consensus 298 ~~~~~~fi~v~~ 309 (494)
T COG0464 298 LESRSRFISVKG 309 (494)
T ss_pred hhCCCeEEEeeC
Confidence 433444445433
No 42
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=99.85 E-value=5.4e-21 Score=183.11 Aligned_cols=130 Identities=32% Similarity=0.529 Sum_probs=115.6
Q ss_pred eEecCCCCCChHHHHHHHHHHcCCCEEEeechhhhhhhhcccchhhHHHHHHHHHhcC-CeEEEEcCccccccccccccC
Q 035561 491 VLIVGERGTGKTSLALAIAAEARVPVVNVEAQELEAGLWVGQSASNVRELFQTARDLA-PVIIFVEDFDLFAGVRGQFIH 569 (979)
Q Consensus 491 VLL~GPPGTGKTtLArAlA~elg~~~i~Is~sdL~~~~~vG~~~~~Ir~lF~~A~~~a-P~ILfIDEIDaL~~~r~~~~~ 569 (979)
|||+||||||||++|+.+|+.++.+++.++++++. +.+.+.+...++.+|..++... ||||||||+|.+++..+ .
T Consensus 1 ill~G~~G~GKT~l~~~la~~l~~~~~~i~~~~~~-~~~~~~~~~~i~~~~~~~~~~~~~~vl~iDe~d~l~~~~~---~ 76 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLARALAQYLGFPFIEIDGSELI-SSYAGDSEQKIRDFFKKAKKSAKPCVLFIDEIDKLFPKSQ---P 76 (132)
T ss_dssp EEEESSTTSSHHHHHHHHHHHTTSEEEEEETTHHH-TSSTTHHHHHHHHHHHHHHHTSTSEEEEEETGGGTSHHCS---T
T ss_pred CEEECcCCCCeeHHHHHHHhhcccccccccccccc-cccccccccccccccccccccccceeeeeccchhcccccc---c
Confidence 69999999999999999999999999999999997 5678999999999999999887 99999999999987662 2
Q ss_pred CCchhhHHHHHHHHhhhcccccC-CeEEEEecccchhhchhhhhcCCceeeEeccCC
Q 035561 570 TKQQDHESFINQLLVELDGFEKQ-DGVVLMATTRNIKQIDEALQRPGRMDRIFNLQK 625 (979)
Q Consensus 570 ~~~~~~~~iln~LL~~LDg~~~~-~~ViVIATTN~pe~LDpALlRpgRFd~~I~~~~ 625 (979)
..+......++.|+..++..... .+++||+|||.++.++++++| +||++.|++|.
T Consensus 77 ~~~~~~~~~~~~L~~~l~~~~~~~~~~~vI~ttn~~~~i~~~l~~-~rf~~~i~~~~ 132 (132)
T PF00004_consen 77 SSSSFEQRLLNQLLSLLDNPSSKNSRVIVIATTNSPDKIDPALLR-SRFDRRIEFPL 132 (132)
T ss_dssp SSSHHHHHHHHHHHHHHHTTTTTSSSEEEEEEESSGGGSCHHHHS-TTSEEEEEE-S
T ss_pred ccccccccccceeeecccccccccccceeEEeeCChhhCCHhHHh-CCCcEEEEcCC
Confidence 34556678899999999987665 569999999999999999997 89999999873
No 43
>CHL00181 cbbX CbbX; Provisional
Probab=99.85 E-value=2.3e-20 Score=205.70 Aligned_cols=208 Identities=17% Similarity=0.262 Sum_probs=156.9
Q ss_pred CcccCcHHHHHHHHHHHHhhcChhHHHhcCCCCC---ceeEecCCCCCChHHHHHHHHHHcC-------CCEEEeechhh
Q 035561 455 KDFASVESMREEINEVVAFLQNPSAFQEMGARAP---RGVLIVGERGTGKTSLALAIAAEAR-------VPVVNVEAQEL 524 (979)
Q Consensus 455 ~DIvGleevke~L~eiV~~L~~p~~f~~lG~~~P---~gVLL~GPPGTGKTtLArAlA~elg-------~~~i~Is~sdL 524 (979)
++++|++++|+.+++++.++..+..+...|...| .++||+||||||||++|+++|+.+. .+++.++++++
T Consensus 23 ~~l~Gl~~vK~~i~e~~~~~~~~~~~~~~g~~~~~~~~~ill~G~pGtGKT~lAr~la~~~~~~g~~~~~~~~~v~~~~l 102 (287)
T CHL00181 23 EELVGLAPVKTRIREIAALLLIDRLRKNLGLTSSNPGLHMSFTGSPGTGKTTVALKMADILYKLGYIKKGHLLTVTRDDL 102 (287)
T ss_pred HhcCCcHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCceEEEECCCCCCHHHHHHHHHHHHHHcCCCCCCceEEecHHHH
Confidence 4899999999999999988777777788887654 3589999999999999999999762 36999999998
Q ss_pred hhhhhcccchhhHHHHHHHHHhcCCeEEEEcCccccccccccccCCCchhhHHHHHHHHhhhcccccCCeEEEEecccch
Q 035561 525 EAGLWVGQSASNVRELFQTARDLAPVIIFVEDFDLFAGVRGQFIHTKQQDHESFINQLLVELDGFEKQDGVVLMATTRNI 604 (979)
Q Consensus 525 ~~~~~vG~~~~~Ir~lF~~A~~~aP~ILfIDEIDaL~~~r~~~~~~~~~~~~~iln~LL~~LDg~~~~~~ViVIATTN~p 604 (979)
. +.|.|.++..++.+|+.|. ++||||||+|.+.+.++ .++.....++.|+..|+... ..++||+|++..
T Consensus 103 ~-~~~~g~~~~~~~~~l~~a~---ggVLfIDE~~~l~~~~~-----~~~~~~e~~~~L~~~me~~~--~~~~vI~ag~~~ 171 (287)
T CHL00181 103 V-GQYIGHTAPKTKEVLKKAM---GGVLFIDEAYYLYKPDN-----ERDYGSEAIEILLQVMENQR--DDLVVIFAGYKD 171 (287)
T ss_pred H-HHHhccchHHHHHHHHHcc---CCEEEEEccchhccCCC-----ccchHHHHHHHHHHHHhcCC--CCEEEEEeCCcH
Confidence 7 6688988888888888874 48999999999865332 12234567788888887643 456677776542
Q ss_pred --h---hchhhhhcCCceeeEeccCCCCHHHHHHHHHHHHHhccchhhhhhhhHHHHHH----H--cCCCC-HHHHHHHH
Q 035561 605 --K---QIDEALQRPGRMDRIFNLQKPTQSEREKILRIAAQETMDEELIDLVDWRKVAE----K--TALLR-PIELKLVP 672 (979)
Q Consensus 605 --e---~LDpALlRpgRFd~~I~~~~Pd~eeR~~IL~~~l~~~~~~~l~~dvdL~~LA~----~--T~Gfs-gaDL~~Lv 672 (979)
+ .++|+|++ ||+..|.|++|+.+++.+|++.++++... .+.++ ....+.. . .+.|. +.++.+++
T Consensus 172 ~~~~~~~~np~L~s--R~~~~i~F~~~t~~el~~I~~~~l~~~~~-~l~~~-~~~~L~~~i~~~~~~~~~GNaR~vrn~v 247 (287)
T CHL00181 172 RMDKFYESNPGLSS--RIANHVDFPDYTPEELLQIAKIMLEEQQY-QLTPE-AEKALLDYIKKRMEQPLFANARSVRNAL 247 (287)
T ss_pred HHHHHHhcCHHHHH--hCCceEEcCCcCHHHHHHHHHHHHHHhcC-CCChh-HHHHHHHHHHHhCCCCCCccHHHHHHHH
Confidence 2 34699999 99999999999999999999999986532 12222 1222222 2 24555 78888887
Q ss_pred HHHhh
Q 035561 673 VALEG 677 (979)
Q Consensus 673 ~aa~~ 677 (979)
..+..
T Consensus 248 e~~~~ 252 (287)
T CHL00181 248 DRARM 252 (287)
T ss_pred HHHHH
Confidence 55443
No 44
>KOG0742 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.85 E-value=1.5e-20 Score=207.76 Aligned_cols=222 Identities=20% Similarity=0.300 Sum_probs=175.5
Q ss_pred CCCCCCCcccCcHHHHHHHHHHHHhhcChhHHHhcCCCCCceeEecCCCCCChHHHHHHHHHHcCCCEEEeechhhhhhh
Q 035561 449 NPPIPLKDFASVESMREEINEVVAFLQNPSAFQEMGARAPRGVLIVGERGTGKTSLALAIAAEARVPVVNVEAQELEAGL 528 (979)
Q Consensus 449 ~~~~~f~DIvGleevke~L~eiV~~L~~p~~f~~lG~~~P~gVLL~GPPGTGKTtLArAlA~elg~~~i~Is~sdL~~~~ 528 (979)
..+-.|++|+....++..+.++-..-.|.+..+ .+=++||+|||||||||++|+-+|...|..+-.+.+.|+. .
T Consensus 349 ~gk~pl~~ViL~psLe~Rie~lA~aTaNTK~h~----apfRNilfyGPPGTGKTm~ArelAr~SGlDYA~mTGGDVA--P 422 (630)
T KOG0742|consen 349 RGKDPLEGVILHPSLEKRIEDLAIATANTKKHQ----APFRNILFYGPPGTGKTMFARELARHSGLDYAIMTGGDVA--P 422 (630)
T ss_pred cCCCCcCCeecCHHHHHHHHHHHHHhccccccc----chhhheeeeCCCCCCchHHHHHHHhhcCCceehhcCCCcc--c
Confidence 344569999999999999998766544443221 2236899999999999999999999999999999998873 4
Q ss_pred hcccchhhHHHHHHHHHhcC-CeEEEEcCccccccccccccCCCchhhHHHHHHHHhhhcccccCCeEEEEecccchhhc
Q 035561 529 WVGQSASNVRELFQTARDLA-PVIIFVEDFDLFAGVRGQFIHTKQQDHESFINQLLVELDGFEKQDGVVLMATTRNIKQI 607 (979)
Q Consensus 529 ~vG~~~~~Ir~lF~~A~~~a-P~ILfIDEIDaL~~~r~~~~~~~~~~~~~iln~LL~~LDg~~~~~~ViVIATTN~pe~L 607 (979)
...+....++.+|+-|++.. .-+|||||.|+++..|.. ..-++.....+|.||-.-.+ ....++++.+||+|.++
T Consensus 423 lG~qaVTkiH~lFDWakkS~rGLllFIDEADAFLceRnk--tymSEaqRsaLNAlLfRTGd--qSrdivLvlAtNrpgdl 498 (630)
T KOG0742|consen 423 LGAQAVTKIHKLFDWAKKSRRGLLLFIDEADAFLCERNK--TYMSEAQRSALNALLFRTGD--QSRDIVLVLATNRPGDL 498 (630)
T ss_pred cchHHHHHHHHHHHHHhhcccceEEEehhhHHHHHHhch--hhhcHHHHHHHHHHHHHhcc--cccceEEEeccCCccch
Confidence 45677889999999998754 578999999999888764 23345567889998855432 23458888899999999
Q ss_pred hhhhhcCCceeeEeccCCCCHHHHHHHHHHHHHhccch------------------------hhhhhhhHHHHHHHcCCC
Q 035561 608 DEALQRPGRMDRIFNLQKPTQSEREKILRIAAQETMDE------------------------ELIDLVDWRKVAEKTALL 663 (979)
Q Consensus 608 DpALlRpgRFd~~I~~~~Pd~eeR~~IL~~~l~~~~~~------------------------~l~~dvdL~~LA~~T~Gf 663 (979)
|.++-. |||..|+||.|..++|..+|..++.+.... ....+-.+.+.|++|+||
T Consensus 499 DsAV~D--Ride~veFpLPGeEERfkll~lYlnkyi~~~~~~~~~~~~~~lfkk~sQ~i~l~~~~t~~~~~EaAkkTeGf 576 (630)
T KOG0742|consen 499 DSAVND--RIDEVVEFPLPGEEERFKLLNLYLNKYILKPATSGKPGKWSHLFKKESQRIKLAGFDTGRKCSEAAKKTEGF 576 (630)
T ss_pred hHHHHh--hhhheeecCCCChHHHHHHHHHHHHHHhcCcCCCCCCchhhHHHhhhhheeeeccchHHHHHHHHHHhccCC
Confidence 999999 999999999999999999999998754210 011223466789999999
Q ss_pred CHHHHHHHHHHHhhhhhcc
Q 035561 664 RPIELKLVPVALEGSAFRS 682 (979)
Q Consensus 664 sgaDL~~Lv~aa~~aa~r~ 682 (979)
||.+|..|+...++++..+
T Consensus 577 SGREiakLva~vQAavYgs 595 (630)
T KOG0742|consen 577 SGREIAKLVASVQAAVYGS 595 (630)
T ss_pred cHHHHHHHHHHHHHHHhcc
Confidence 9999999988777776654
No 45
>KOG0743 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.84 E-value=6.8e-20 Score=207.21 Aligned_cols=207 Identities=22% Similarity=0.296 Sum_probs=161.0
Q ss_pred CCCCCcccCcHHHHHHHHH-HHHhhcChhHHHhcCCCCCceeEecCCCCCChHHHHHHHHHHcCCCEEEeechhhhhhhh
Q 035561 451 PIPLKDFASVESMREEINE-VVAFLQNPSAFQEMGARAPRGVLIVGERGTGKTSLALAIAAEARVPVVNVEAQELEAGLW 529 (979)
Q Consensus 451 ~~~f~DIvGleevke~L~e-iV~~L~~p~~f~~lG~~~P~gVLL~GPPGTGKTtLArAlA~elg~~~i~Is~sdL~~~~~ 529 (979)
+.+|+.++-..+.|+.+.+ +..|.+..+-|.+.|.+..+|.|||||||||||+++.|+|+.++..++-++.++..
T Consensus 197 pstF~TlaMd~~~K~~I~~Dl~~F~k~k~~YkrvGkawKRGYLLYGPPGTGKSS~IaAmAn~L~ydIydLeLt~v~---- 272 (457)
T KOG0743|consen 197 PSTFETLAMDPDLKERIIDDLDDFIKGKDFYKRVGKAWKRGYLLYGPPGTGKSSFIAAMANYLNYDIYDLELTEVK---- 272 (457)
T ss_pred CCCccccccChhHHHHHHHHHHHHHhcchHHHhcCcchhccceeeCCCCCCHHHHHHHHHhhcCCceEEeeecccc----
Confidence 3899999999999999865 66678999999999999999999999999999999999999999999988876653
Q ss_pred cccchhhHHHHHHHHHhcCCeEEEEcCccccccccccccC---CCc-hhhHHHHHHHHhhhcccccCC--eEEEEecccc
Q 035561 530 VGQSASNVRELFQTARDLAPVIIFVEDFDLFAGVRGQFIH---TKQ-QDHESFINQLLVELDGFEKQD--GVVLMATTRN 603 (979)
Q Consensus 530 vG~~~~~Ir~lF~~A~~~aP~ILfIDEIDaL~~~r~~~~~---~~~-~~~~~iln~LL~~LDg~~~~~--~ViVIATTN~ 603 (979)
.... +|.+...+.. .+||+|++||+=+.-++.... ..+ ....-+++.||+.+||+-+.. -.+||.|||.
T Consensus 273 --~n~d-Lr~LL~~t~~--kSIivIEDIDcs~~l~~~~~~~~~~~~~~~~~VTlSGLLNfiDGlwSscg~ERIivFTTNh 347 (457)
T KOG0743|consen 273 --LDSD-LRHLLLATPN--KSILLIEDIDCSFDLRERRKKKKENFEGDLSRVTLSGLLNFLDGLWSSCGDERIIVFTTNH 347 (457)
T ss_pred --CcHH-HHHHHHhCCC--CcEEEEeecccccccccccccccccccCCcceeehHHhhhhhccccccCCCceEEEEecCC
Confidence 2222 7777766643 589999999975432221111 111 123357889999999985544 5889999999
Q ss_pred hhhchhhhhcCCceeeEeccCCCCHHHHHHHHHHHHHhccchhhhhhhhHHHHHHHcCC--CCHHHHHHH
Q 035561 604 IKQIDEALQRPGRMDRIFNLQKPTQSEREKILRIAAQETMDEELIDLVDWRKVAEKTAL--LRPIELKLV 671 (979)
Q Consensus 604 pe~LDpALlRpgRFd~~I~~~~Pd~eeR~~IL~~~l~~~~~~~l~~dvdL~~LA~~T~G--fsgaDL~~L 671 (979)
++.|||||+||||+|.+|+++.-+.++-..+++.++....+ ..-+.++.+..++ .||||+...
T Consensus 348 ~EkLDPALlRpGRmDmhI~mgyCtf~~fK~La~nYL~~~~~-----h~L~~eie~l~~~~~~tPA~V~e~ 412 (457)
T KOG0743|consen 348 KEKLDPALLRPGRMDMHIYMGYCTFEAFKTLASNYLGIEED-----HRLFDEIERLIEETEVTPAQVAEE 412 (457)
T ss_pred hhhcCHhhcCCCcceeEEEcCCCCHHHHHHHHHHhcCCCCC-----cchhHHHHHHhhcCccCHHHHHHH
Confidence 99999999999999999999999999999999999875321 1223334444333 488887743
No 46
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=99.83 E-value=1.2e-19 Score=197.22 Aligned_cols=175 Identities=20% Similarity=0.313 Sum_probs=139.0
Q ss_pred CCcccCcHHHHHHHHHHHHhhcChhHHHhcCCCC---CceeEecCCCCCChHHHHHHHHHHc-------CCCEEEeechh
Q 035561 454 LKDFASVESMREEINEVVAFLQNPSAFQEMGARA---PRGVLIVGERGTGKTSLALAIAAEA-------RVPVVNVEAQE 523 (979)
Q Consensus 454 f~DIvGleevke~L~eiV~~L~~p~~f~~lG~~~---P~gVLL~GPPGTGKTtLArAlA~el-------g~~~i~Is~sd 523 (979)
+++++|++++|+.+++++.+..........|... +.++||+||||||||++|+++|+.+ ..+++.+++++
T Consensus 5 l~~~~Gl~~vk~~i~~~~~~~~~~~~~~~~g~~~~~~~~~vll~GppGtGKTtlA~~ia~~l~~~~~~~~~~~v~~~~~~ 84 (261)
T TIGR02881 5 LSRMVGLDEVKALIKEIYAWIQINEKRKEEGLKTSKQVLHMIFKGNPGTGKTTVARILGKLFKEMNVLSKGHLIEVERAD 84 (261)
T ss_pred HHHhcChHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCcceEEEEcCCCCCHHHHHHHHHHHHHhcCcccCCceEEecHHH
Confidence 6789999999999999998866555555667653 3579999999999999999999875 24789999999
Q ss_pred hhhhhhcccchhhHHHHHHHHHhcCCeEEEEcCccccccccccccCCCchhhHHHHHHHHhhhcccccCCeEEEEecccc
Q 035561 524 LEAGLWVGQSASNVRELFQTARDLAPVIIFVEDFDLFAGVRGQFIHTKQQDHESFINQLLVELDGFEKQDGVVLMATTRN 603 (979)
Q Consensus 524 L~~~~~vG~~~~~Ir~lF~~A~~~aP~ILfIDEIDaL~~~r~~~~~~~~~~~~~iln~LL~~LDg~~~~~~ViVIATTN~ 603 (979)
+. +.+.|++...++++|+.|. ++||||||+|.|.+. +........++.|+..|+... ..+++|++++.
T Consensus 85 l~-~~~~g~~~~~~~~~~~~a~---~~VL~IDE~~~L~~~------~~~~~~~~~i~~Ll~~~e~~~--~~~~vila~~~ 152 (261)
T TIGR02881 85 LV-GEYIGHTAQKTREVIKKAL---GGVLFIDEAYSLARG------GEKDFGKEAIDTLVKGMEDNR--NEFVLILAGYS 152 (261)
T ss_pred hh-hhhccchHHHHHHHHHhcc---CCEEEEechhhhccC------CccchHHHHHHHHHHHHhccC--CCEEEEecCCc
Confidence 98 6789999999999998875 589999999999631 112233567788888887643 33444444432
Q ss_pred -----hhhchhhhhcCCceeeEeccCCCCHHHHHHHHHHHHHhc
Q 035561 604 -----IKQIDEALQRPGRMDRIFNLQKPTQSEREKILRIAAQET 642 (979)
Q Consensus 604 -----pe~LDpALlRpgRFd~~I~~~~Pd~eeR~~IL~~~l~~~ 642 (979)
...++|++++ ||+..|.||.++.+++.+|++.+++..
T Consensus 153 ~~~~~~~~~~p~L~s--Rf~~~i~f~~~~~~el~~Il~~~~~~~ 194 (261)
T TIGR02881 153 DEMDYFLSLNPGLRS--RFPISIDFPDYTVEELMEIAERMVKER 194 (261)
T ss_pred chhHHHHhcChHHHh--ccceEEEECCCCHHHHHHHHHHHHHHc
Confidence 2247899999 999999999999999999999998764
No 47
>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX. Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.
Probab=99.82 E-value=1.6e-19 Score=198.89 Aligned_cols=175 Identities=19% Similarity=0.346 Sum_probs=143.0
Q ss_pred CcccCcHHHHHHHHHHHHhhcChhHHHhcCCCC--C-ceeEecCCCCCChHHHHHHHHHHcC-------CCEEEeechhh
Q 035561 455 KDFASVESMREEINEVVAFLQNPSAFQEMGARA--P-RGVLIVGERGTGKTSLALAIAAEAR-------VPVVNVEAQEL 524 (979)
Q Consensus 455 ~DIvGleevke~L~eiV~~L~~p~~f~~lG~~~--P-~gVLL~GPPGTGKTtLArAlA~elg-------~~~i~Is~sdL 524 (979)
++++|++++|+.+.+++.++..+..+...|... | .++||+||||||||++|+++|..+. .+++.++++++
T Consensus 22 ~~l~Gl~~vk~~i~e~~~~~~~~~~r~~~g~~~~~~~~~vll~G~pGTGKT~lA~~ia~~l~~~g~~~~~~~v~v~~~~l 101 (284)
T TIGR02880 22 RELIGLKPVKTRIREIAALLLVERLRQRLGLASAAPTLHMSFTGNPGTGKTTVALRMAQILHRLGYVRKGHLVSVTRDDL 101 (284)
T ss_pred HhccCHHHHHHHHHHHHHHHHHHHHHHHhCCCcCCCCceEEEEcCCCCCHHHHHHHHHHHHHHcCCcccceEEEecHHHH
Confidence 369999999999999999988888888888764 3 4899999999999999999998762 37999999999
Q ss_pred hhhhhcccchhhHHHHHHHHHhcCCeEEEEcCccccccccccccCCCchhhHHHHHHHHhhhcccccCCeEEEEecccc-
Q 035561 525 EAGLWVGQSASNVRELFQTARDLAPVIIFVEDFDLFAGVRGQFIHTKQQDHESFINQLLVELDGFEKQDGVVLMATTRN- 603 (979)
Q Consensus 525 ~~~~~vG~~~~~Ir~lF~~A~~~aP~ILfIDEIDaL~~~r~~~~~~~~~~~~~iln~LL~~LDg~~~~~~ViVIATTN~- 603 (979)
. +.+.|.++..++++|+.|. +++|||||++.+.+.++ .+.......+.|+..|+.. ..+++||+|++.
T Consensus 102 ~-~~~~g~~~~~~~~~~~~a~---~gvL~iDEi~~L~~~~~-----~~~~~~~~~~~Ll~~le~~--~~~~~vI~a~~~~ 170 (284)
T TIGR02880 102 V-GQYIGHTAPKTKEILKRAM---GGVLFIDEAYYLYRPDN-----ERDYGQEAIEILLQVMENQ--RDDLVVILAGYKD 170 (284)
T ss_pred h-HhhcccchHHHHHHHHHcc---CcEEEEechhhhccCCC-----ccchHHHHHHHHHHHHhcC--CCCEEEEEeCCcH
Confidence 7 5688988888999998874 49999999999864322 1223456777888888753 345666666654
Q ss_pred -hhh---chhhhhcCCceeeEeccCCCCHHHHHHHHHHHHHhc
Q 035561 604 -IKQ---IDEALQRPGRMDRIFNLQKPTQSEREKILRIAAQET 642 (979)
Q Consensus 604 -pe~---LDpALlRpgRFd~~I~~~~Pd~eeR~~IL~~~l~~~ 642 (979)
++. ++|+|++ ||+..|.||+++.+++..|++.++++.
T Consensus 171 ~~~~~~~~np~L~s--R~~~~i~fp~l~~edl~~I~~~~l~~~ 211 (284)
T TIGR02880 171 RMDSFFESNPGFSS--RVAHHVDFPDYSEAELLVIAGLMLKEQ 211 (284)
T ss_pred HHHHHHhhCHHHHh--hCCcEEEeCCcCHHHHHHHHHHHHHHh
Confidence 333 4899999 999999999999999999999999875
No 48
>KOG0744 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.80 E-value=3.5e-19 Score=193.11 Aligned_cols=232 Identities=23% Similarity=0.351 Sum_probs=176.9
Q ss_pred CCcccCcHHHHHHHHHHHHhhcChhHHHhcCC-----CCCceeEecCCCCCChHHHHHHHHHHcC---------CCEEEe
Q 035561 454 LKDFASVESMREEINEVVAFLQNPSAFQEMGA-----RAPRGVLIVGERGTGKTSLALAIAAEAR---------VPVVNV 519 (979)
Q Consensus 454 f~DIvGleevke~L~eiV~~L~~p~~f~~lG~-----~~P~gVLL~GPPGTGKTtLArAlA~elg---------~~~i~I 519 (979)
|+.++=-.++|+.|...+.. .-+|...+. ...+-+||+||||||||+|+||+|+.+. ..++++
T Consensus 141 WEsLiyds~lK~~ll~Ya~s---~l~fsek~vntnlIt~NRliLlhGPPGTGKTSLCKaLaQkLSIR~~~~y~~~~liEi 217 (423)
T KOG0744|consen 141 WESLIYDSNLKERLLSYAAS---ALLFSEKKVNTNLITWNRLILLHGPPGTGKTSLCKALAQKLSIRTNDRYYKGQLIEI 217 (423)
T ss_pred HHHHhhcccHHHHHHHHHHH---HHHHHhcCCCCceeeeeeEEEEeCCCCCChhHHHHHHHHhheeeecCccccceEEEE
Confidence 56666667788888766544 112333333 2346799999999999999999999984 368999
Q ss_pred echhhhhhhhcccchhhHHHHHHHHHhcC---C--eEEEEcCcccccccccc-ccCCCchhhHHHHHHHHhhhcccccCC
Q 035561 520 EAQELEAGLWVGQSASNVRELFQTARDLA---P--VIIFVEDFDLFAGVRGQ-FIHTKQQDHESFINQLLVELDGFEKQD 593 (979)
Q Consensus 520 s~sdL~~~~~vG~~~~~Ir~lF~~A~~~a---P--~ILfIDEIDaL~~~r~~-~~~~~~~~~~~iln~LL~~LDg~~~~~ 593 (979)
++..++ ++|.+++.+.+..+|++..... . ..++|||+++|+..|.. .++.+..+.-+++|.+|++||.+...+
T Consensus 218 nshsLF-SKWFsESgKlV~kmF~kI~ELv~d~~~lVfvLIDEVESLa~aR~s~~S~~EpsDaIRvVNalLTQlDrlK~~~ 296 (423)
T KOG0744|consen 218 NSHSLF-SKWFSESGKLVAKMFQKIQELVEDRGNLVFVLIDEVESLAAARTSASSRNEPSDAIRVVNALLTQLDRLKRYP 296 (423)
T ss_pred ehhHHH-HHHHhhhhhHHHHHHHHHHHHHhCCCcEEEEEeHHHHHHHHHHHhhhcCCCCchHHHHHHHHHHHHHHhccCC
Confidence 999998 7899999999999999986532 2 35569999999988843 344555667799999999999999999
Q ss_pred eEEEEecccchhhchhhhhcCCceeeEeccCCCCHHHHHHHHHHHHHhccchh----------hhhh-----hhHHHHHH
Q 035561 594 GVVLMATTRNIKQIDEALQRPGRMDRIFNLQKPTQSEREKILRIAAQETMDEE----------LIDL-----VDWRKVAE 658 (979)
Q Consensus 594 ~ViVIATTN~pe~LDpALlRpgRFd~~I~~~~Pd~eeR~~IL~~~l~~~~~~~----------l~~d-----vdL~~LA~ 658 (979)
+|++++|+|-.+.||-|+.. |-|-..++++|+.+.|.+|++.++....... .... .....++.
T Consensus 297 NvliL~TSNl~~siD~AfVD--RADi~~yVG~Pt~~ai~~IlkscieEL~~~gIi~~~~~s~~~~~~i~~~~~~~~~~~~ 374 (423)
T KOG0744|consen 297 NVLILATSNLTDSIDVAFVD--RADIVFYVGPPTAEAIYEILKSCIEELISSGIILFHQRSTGVKEFIKYQKALRNILIE 374 (423)
T ss_pred CEEEEeccchHHHHHHHhhh--HhhheeecCCccHHHHHHHHHHHHHHHHhcCeeeeeccchhhhHHhHhhHhHHHHHHH
Confidence 99999999999999999999 9999999999999999999999887543211 1111 12223333
Q ss_pred H-cCCCCHHHHHHHHHHHhhhhhccCCCChHHHh
Q 035561 659 K-TALLRPIELKLVPVALEGSAFRSKFLDTDELM 691 (979)
Q Consensus 659 ~-T~GfsgaDL~~Lv~aa~~aa~r~~~~s~~ei~ 691 (979)
. +.|.||.-|..|.-.+++.-.+...++.++.+
T Consensus 375 ~~~~gLSGRtlrkLP~Laha~y~~~~~v~~~~fl 408 (423)
T KOG0744|consen 375 LSTVGLSGRTLRKLPLLAHAEYFRTFTVDLSNFL 408 (423)
T ss_pred HhhcCCccchHhhhhHHHHHhccCCCccChHHHH
Confidence 3 58999999998876666655555556655544
No 49
>TIGR02902 spore_lonB ATP-dependent protease LonB. Members of this protein are LonB, a paralog of the ATP-dependent protease La (LonA, TIGR00763). LonB proteins are found strictly, and almost universally, in endospore-forming bacteria. This protease was shown, in Bacillus subtilis, to be expressed specifically in the forespore, during sporulation, under control of sigma(F). The lonB gene, despite location immediately upstream of lonA, was shown to be monocistronic. LonB appears able to act on sigma(H) for post-translation control, but lonB mutation did not produce an obvious sporulation defect under the conditions tested. Note that additional paralogs of LonA and LonB occur in the Clostridium lineage and this model selects only one per species as the protein that corresponds to LonB in B. subtilis.
Probab=99.77 E-value=5.3e-18 Score=201.43 Aligned_cols=252 Identities=18% Similarity=0.186 Sum_probs=168.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhcccccCCCCCCCCccchhhHHHHHHHHHHHHHHHhhhhcCCCchhHHHHhhcccCCC
Q 035561 371 WFLIRTAVYGYVLFHILRFMKRKIPRLLGFGPMRRDPNFRKLRRVKAYFNYRVRRIKRKKKAGIDPIKNAFERMKRVKNP 450 (979)
Q Consensus 371 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~pnf~~~~~~~~~~~~~~~~~~~~~k~~~~p~~~~~~~l~~v~~~ 450 (979)
.+++++++..++++|||+.++.+.. ++....+...++..+..+.+....+.|+.+ +.+
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~--------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~r 60 (531)
T TIGR02902 3 FAIVQIIFLIIIGLYFFNALKNQQT--------------NKITIDKESKKELEKLNKMRAIRLTEPLSE--------KTR 60 (531)
T ss_pred eehHHHHHHHHHHHHHHHHHHhhcC--------------CeeeeehhhhHHHHHHHHhhhhhhcchHHH--------hhC
Confidence 3567888889999999999988754 233334445555555555555566777654 567
Q ss_pred CCCCCcccCcHHHHHHHHHHHHhhcChhHHHhcCCCCCceeEecCCCCCChHHHHHHHHHHc----------CCCEEEee
Q 035561 451 PIPLKDFASVESMREEINEVVAFLQNPSAFQEMGARAPRGVLIVGERGTGKTSLALAIAAEA----------RVPVVNVE 520 (979)
Q Consensus 451 ~~~f~DIvGleevke~L~eiV~~L~~p~~f~~lG~~~P~gVLL~GPPGTGKTtLArAlA~el----------g~~~i~Is 520 (979)
+.+|++++|.++..+.|+..+ ..+.|.++||+||||||||++|++++.++ +.+|+.++
T Consensus 61 p~~f~~iiGqs~~i~~l~~al------------~~~~~~~vLi~Ge~GtGKt~lAr~i~~~~~~~~~s~~~~~~~fi~id 128 (531)
T TIGR02902 61 PKSFDEIIGQEEGIKALKAAL------------CGPNPQHVIIYGPPGVGKTAAARLVLEEAKKNPASPFKEGAAFVEID 128 (531)
T ss_pred cCCHHHeeCcHHHHHHHHHHH------------hCCCCceEEEECCCCCCHHHHHHHHHHHhhhccCCCcCCCCCEEEEc
Confidence 789999999999888887431 22456789999999999999999998753 36899999
Q ss_pred chhh--h----hhhhcccchhh----------------HHHHHHHHHhcCCeEEEEcCccccccccccccCCCchhhHHH
Q 035561 521 AQEL--E----AGLWVGQSASN----------------VRELFQTARDLAPVIIFVEDFDLFAGVRGQFIHTKQQDHESF 578 (979)
Q Consensus 521 ~sdL--~----~~~~vG~~~~~----------------Ir~lF~~A~~~aP~ILfIDEIDaL~~~r~~~~~~~~~~~~~i 578 (979)
|+.. . .+...|..... -...+.. ...++|||||+|.+. ...
T Consensus 129 ~~~~~~~~~~~~~~li~~~~~p~~~~~~~~g~~g~~~~~~G~l~~---a~gG~L~IdEI~~L~--------------~~~ 191 (531)
T TIGR02902 129 ATTARFDERGIADPLIGSVHDPIYQGAGPLGIAGIPQPKPGAVTR---AHGGVLFIDEIGELH--------------PVQ 191 (531)
T ss_pred cccccCCccccchhhcCCcccchhccccccccCCcccccCchhhc---cCCcEEEEechhhCC--------------HHH
Confidence 8642 0 00101100000 0011222 245899999999883 223
Q ss_pred HHHHHhhhccc---------------------------ccCCeEEEEecccchhhchhhhhcCCceeeEeccCCCCHHHH
Q 035561 579 INQLLVELDGF---------------------------EKQDGVVLMATTRNIKQIDEALQRPGRMDRIFNLQKPTQSER 631 (979)
Q Consensus 579 ln~LL~~LDg~---------------------------~~~~~ViVIATTN~pe~LDpALlRpgRFd~~I~~~~Pd~eeR 631 (979)
.+.|+..|+.- ...+.++|+||||.|+.++|++++ |+ ..+.|++++.+++
T Consensus 192 q~~LL~~Le~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~rlI~ATt~~p~~L~paLrs--R~-~~I~f~pL~~eei 268 (531)
T TIGR02902 192 MNKLLKVLEDRKVFLDSAYYNSENPNIPSHIHDIFQNGLPADFRLIGATTRNPEEIPPALRS--RC-VEIFFRPLLDEEI 268 (531)
T ss_pred HHHHHHHHHhCeeeeccccccccCcccccchhhhcccCcccceEEEEEecCCcccCChHHhh--hh-heeeCCCCCHHHH
Confidence 44555444320 011236677888889999999999 77 4788999999999
Q ss_pred HHHHHHHHHhccchhhhhhhhHHHHHHHcCCCCHHHHHHHHHHHhhhhh
Q 035561 632 EKILRIAAQETMDEELIDLVDWRKVAEKTALLRPIELKLVPVALEGSAF 680 (979)
Q Consensus 632 ~~IL~~~l~~~~~~~l~~dvdL~~LA~~T~GfsgaDL~~Lv~aa~~aa~ 680 (979)
.+|++..+++.. ...++..++.|+..+. +++++.++++.+...+.
T Consensus 269 ~~Il~~~a~k~~--i~is~~al~~I~~y~~--n~Rel~nll~~Aa~~A~ 313 (531)
T TIGR02902 269 KEIAKNAAEKIG--INLEKHALELIVKYAS--NGREAVNIVQLAAGIAL 313 (531)
T ss_pred HHHHHHHHHHcC--CCcCHHHHHHHHHhhh--hHHHHHHHHHHHHHHHh
Confidence 999999998653 1233444666666553 78899888877655444
No 50
>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B.
Probab=99.74 E-value=2.4e-17 Score=173.99 Aligned_cols=190 Identities=19% Similarity=0.243 Sum_probs=124.3
Q ss_pred CCCCCCCcccCcHHHHHHHHHHHHhhcChhHHHhcCCCCCceeEecCCCCCChHHHHHHHHHHcCCCEEEeechhhhhhh
Q 035561 449 NPPIPLKDFASVESMREEINEVVAFLQNPSAFQEMGARAPRGVLIVGERGTGKTSLALAIAAEARVPVVNVEAQELEAGL 528 (979)
Q Consensus 449 ~~~~~f~DIvGleevke~L~eiV~~L~~p~~f~~lG~~~P~gVLL~GPPGTGKTtLArAlA~elg~~~i~Is~sdL~~~~ 528 (979)
-+|.+|+|++|++++++.++-++...+.. .....++|||||||+||||||+.+|++++.++..++++.+. +
T Consensus 18 lRP~~L~efiGQ~~l~~~l~i~i~aa~~r-------~~~l~h~lf~GPPG~GKTTLA~IIA~e~~~~~~~~sg~~i~--k 88 (233)
T PF05496_consen 18 LRPKSLDEFIGQEHLKGNLKILIRAAKKR-------GEALDHMLFYGPPGLGKTTLARIIANELGVNFKITSGPAIE--K 88 (233)
T ss_dssp TS-SSCCCS-S-HHHHHHHHHHHHHHHCT-------TS---EEEEESSTTSSHHHHHHHHHHHCT--EEEEECCC----S
T ss_pred cCCCCHHHccCcHHHHhhhHHHHHHHHhc-------CCCcceEEEECCCccchhHHHHHHHhccCCCeEeccchhhh--h
Confidence 45679999999999999998666543221 12345799999999999999999999999999999886552 1
Q ss_pred hcccchhhHHHHHHHHHhcCCeEEEEcCccccccccccccCCCchhhHHHHHHHHhhhcccc------c----------C
Q 035561 529 WVGQSASNVRELFQTARDLAPVIIFVEDFDLFAGVRGQFIHTKQQDHESFINQLLVELDGFE------K----------Q 592 (979)
Q Consensus 529 ~vG~~~~~Ir~lF~~A~~~aP~ILfIDEIDaL~~~r~~~~~~~~~~~~~iln~LL~~LDg~~------~----------~ 592 (979)
. ..+..++.... ...|||||||+.+. ...-..|+..|+++. . -
T Consensus 89 -~----~dl~~il~~l~--~~~ILFIDEIHRln--------------k~~qe~LlpamEd~~idiiiG~g~~ar~~~~~l 147 (233)
T PF05496_consen 89 -A----GDLAAILTNLK--EGDILFIDEIHRLN--------------KAQQEILLPAMEDGKIDIIIGKGPNARSIRINL 147 (233)
T ss_dssp -C----HHHHHHHHT----TT-EEEECTCCC----------------HHHHHHHHHHHHCSEEEEEBSSSSS-BEEEEE-
T ss_pred -H----HHHHHHHHhcC--CCcEEEEechhhcc--------------HHHHHHHHHHhccCeEEEEeccccccceeeccC
Confidence 1 23334444332 46899999999883 223345666666531 1 1
Q ss_pred CeEEEEecccchhhchhhhhcCCceeeEeccCCCCHHHHHHHHHHHHHhccchhhhhhhhHHHHHHHcCCCCHHHHHHHH
Q 035561 593 DGVVLMATTRNIKQIDEALQRPGRMDRIFNLQKPTQSEREKILRIAAQETMDEELIDLVDWRKVAEKTALLRPIELKLVP 672 (979)
Q Consensus 593 ~~ViVIATTN~pe~LDpALlRpgRFd~~I~~~~Pd~eeR~~IL~~~l~~~~~~~l~~dvdL~~LA~~T~GfsgaDL~~Lv 672 (979)
+++.+|+||++...|.+.|+. ||.....+..++.++..+|++...+... -..++.-...+|+++.| +|.--.+|.
T Consensus 148 ~~FTligATTr~g~ls~pLrd--RFgi~~~l~~Y~~~el~~Iv~r~a~~l~--i~i~~~~~~~Ia~rsrG-tPRiAnrll 222 (233)
T PF05496_consen 148 PPFTLIGATTRAGLLSSPLRD--RFGIVLRLEFYSEEELAKIVKRSARILN--IEIDEDAAEEIARRSRG-TPRIANRLL 222 (233)
T ss_dssp ---EEEEEESSGCCTSHCCCT--TSSEEEE----THHHHHHHHHHCCHCTT---EE-HHHHHHHHHCTTT-SHHHHHHHH
T ss_pred CCceEeeeeccccccchhHHh--hcceecchhcCCHHHHHHHHHHHHHHhC--CCcCHHHHHHHHHhcCC-ChHHHHHHH
Confidence 358899999999999999999 9999999999999999999997765432 22344557789999988 555444444
Q ss_pred H
Q 035561 673 V 673 (979)
Q Consensus 673 ~ 673 (979)
+
T Consensus 223 ~ 223 (233)
T PF05496_consen 223 R 223 (233)
T ss_dssp H
T ss_pred H
Confidence 3
No 51
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=99.72 E-value=1.9e-16 Score=194.88 Aligned_cols=192 Identities=19% Similarity=0.227 Sum_probs=143.4
Q ss_pred CCCCCcccCcHHHHHHHHHHHHhhcChhHHHhcCCCCCceeEecCCCCCChHHHHHHHHHHc----------CCCEEEee
Q 035561 451 PIPLKDFASVESMREEINEVVAFLQNPSAFQEMGARAPRGVLIVGERGTGKTSLALAIAAEA----------RVPVVNVE 520 (979)
Q Consensus 451 ~~~f~DIvGleevke~L~eiV~~L~~p~~f~~lG~~~P~gVLL~GPPGTGKTtLArAlA~el----------g~~~i~Is 520 (979)
+-++++++|.++..+.+.+++ ..+...++||+||||||||++|+++|..+ +.+++.++
T Consensus 178 ~~~l~~~igr~~ei~~~~~~L------------~~~~~~n~lL~G~pG~GKT~l~~~la~~~~~~~~p~~l~~~~~~~~~ 245 (731)
T TIGR02639 178 NGKIDPLIGREDELERTIQVL------------CRRKKNNPLLVGEPGVGKTAIAEGLALRIAEGKVPENLKNAKIYSLD 245 (731)
T ss_pred cCCCCcccCcHHHHHHHHHHH------------hcCCCCceEEECCCCCCHHHHHHHHHHHHHhCCCchhhcCCeEEEec
Confidence 457899999997777554333 22334679999999999999999999987 67899999
Q ss_pred chhhhh-hhhcccchhhHHHHHHHHHhcCCeEEEEcCccccccccccccCCCchhhHHHHHHHHhhhcccccCCeEEEEe
Q 035561 521 AQELEA-GLWVGQSASNVRELFQTARDLAPVIIFVEDFDLFAGVRGQFIHTKQQDHESFINQLLVELDGFEKQDGVVLMA 599 (979)
Q Consensus 521 ~sdL~~-~~~vG~~~~~Ir~lF~~A~~~aP~ILfIDEIDaL~~~r~~~~~~~~~~~~~iln~LL~~LDg~~~~~~ViVIA 599 (979)
++.+.+ .+|.|+.+.+++.+|+.+....|+||||||+|.|.+.+.. ++++.. ..+.|...|. ...+.+||
T Consensus 246 ~~~l~a~~~~~g~~e~~l~~i~~~~~~~~~~ILfiDEih~l~~~g~~--~~~~~~---~~~~L~~~l~----~g~i~~Ig 316 (731)
T TIGR02639 246 MGSLLAGTKYRGDFEERLKAVVSEIEKEPNAILFIDEIHTIVGAGAT--SGGSMD---ASNLLKPALS----SGKLRCIG 316 (731)
T ss_pred HHHHhhhccccchHHHHHHHHHHHHhccCCeEEEEecHHHHhccCCC--CCccHH---HHHHHHHHHh----CCCeEEEE
Confidence 998875 3688999999999999998888999999999999865432 111111 2233333332 34678888
Q ss_pred cccchh-----hchhhhhcCCceeeEeccCCCCHHHHHHHHHHHHHhcc--chhhhhhhhHHHHHHHcCCCCHH
Q 035561 600 TTRNIK-----QIDEALQRPGRMDRIFNLQKPTQSEREKILRIAAQETM--DEELIDLVDWRKVAEKTALLRPI 666 (979)
Q Consensus 600 TTN~pe-----~LDpALlRpgRFd~~I~~~~Pd~eeR~~IL~~~l~~~~--~~~l~~dvdL~~LA~~T~Gfsga 666 (979)
+||..+ .+|++|.| ||. .|.|+.|+.+++.+||+.+..... .....++..+..++..+..|-+.
T Consensus 317 aTt~~e~~~~~~~d~al~r--Rf~-~i~v~~p~~~~~~~il~~~~~~~e~~~~v~i~~~al~~~~~ls~ryi~~ 387 (731)
T TIGR02639 317 STTYEEYKNHFEKDRALSR--RFQ-KIDVGEPSIEETVKILKGLKEKYEEFHHVKYSDEALEAAVELSARYIND 387 (731)
T ss_pred ecCHHHHHHHhhhhHHHHH--hCc-eEEeCCCCHHHHHHHHHHHHHHHHhccCcccCHHHHHHHHHhhhccccc
Confidence 888643 57999999 996 799999999999999998765421 11234566677788877776543
No 52
>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed
Probab=99.69 E-value=6.5e-16 Score=173.24 Aligned_cols=195 Identities=21% Similarity=0.248 Sum_probs=140.6
Q ss_pred CCCCCCCCcccCcHHHHHHHHHHHHhhcChhHHHhcCCCCCceeEecCCCCCChHHHHHHHHHHcCCCEEEeechhhhhh
Q 035561 448 KNPPIPLKDFASVESMREEINEVVAFLQNPSAFQEMGARAPRGVLIVGERGTGKTSLALAIAAEARVPVVNVEAQELEAG 527 (979)
Q Consensus 448 ~~~~~~f~DIvGleevke~L~eiV~~L~~p~~f~~lG~~~P~gVLL~GPPGTGKTtLArAlA~elg~~~i~Is~sdL~~~ 527 (979)
+.+|.+|++++|.++.++.|...+.....+ ..++.++|||||||||||++|+++|++++.++..++++.+.
T Consensus 18 ~~rP~~~~~~vG~~~~~~~l~~~l~~~~~~-------~~~~~~~ll~GppG~GKT~la~~ia~~l~~~~~~~~~~~~~-- 88 (328)
T PRK00080 18 SLRPKSLDEFIGQEKVKENLKIFIEAAKKR-------GEALDHVLLYGPPGLGKTTLANIIANEMGVNIRITSGPALE-- 88 (328)
T ss_pred hcCcCCHHHhcCcHHHHHHHHHHHHHHHhc-------CCCCCcEEEECCCCccHHHHHHHHHHHhCCCeEEEeccccc--
Confidence 455679999999999999998777543221 23467899999999999999999999999998887765442
Q ss_pred hhcccchhhHHHHHHHHHhcCCeEEEEcCccccccccccccCCCchhhHHHHHHHHhhhcccc----------------c
Q 035561 528 LWVGQSASNVRELFQTARDLAPVIIFVEDFDLFAGVRGQFIHTKQQDHESFINQLLVELDGFE----------------K 591 (979)
Q Consensus 528 ~~vG~~~~~Ir~lF~~A~~~aP~ILfIDEIDaL~~~r~~~~~~~~~~~~~iln~LL~~LDg~~----------------~ 591 (979)
....+..++... ..++||||||+|.+... .... |...|+.+. .
T Consensus 89 -----~~~~l~~~l~~l--~~~~vl~IDEi~~l~~~-----------~~e~---l~~~~e~~~~~~~l~~~~~~~~~~~~ 147 (328)
T PRK00080 89 -----KPGDLAAILTNL--EEGDVLFIDEIHRLSPV-----------VEEI---LYPAMEDFRLDIMIGKGPAARSIRLD 147 (328)
T ss_pred -----ChHHHHHHHHhc--ccCCEEEEecHhhcchH-----------HHHH---HHHHHHhcceeeeeccCccccceeec
Confidence 112344444433 35789999999988421 1111 222232211 1
Q ss_pred CCeEEEEecccchhhchhhhhcCCceeeEeccCCCCHHHHHHHHHHHHHhccchhhhhhhhHHHHHHHcCCCCHHHHHHH
Q 035561 592 QDGVVLMATTRNIKQIDEALQRPGRMDRIFNLQKPTQSEREKILRIAAQETMDEELIDLVDWRKVAEKTALLRPIELKLV 671 (979)
Q Consensus 592 ~~~ViVIATTN~pe~LDpALlRpgRFd~~I~~~~Pd~eeR~~IL~~~l~~~~~~~l~~dvdL~~LA~~T~GfsgaDL~~L 671 (979)
-.++++|++||++..++++|++ ||...+.+++|+.+++.+|++..+.... ...++..+..|++.+.|.. ..+..+
T Consensus 148 l~~~~li~at~~~~~l~~~L~s--Rf~~~~~l~~~~~~e~~~il~~~~~~~~--~~~~~~~~~~ia~~~~G~p-R~a~~~ 222 (328)
T PRK00080 148 LPPFTLIGATTRAGLLTSPLRD--RFGIVQRLEFYTVEELEKIVKRSARILG--VEIDEEGALEIARRSRGTP-RIANRL 222 (328)
T ss_pred CCCceEEeecCCcccCCHHHHH--hcCeeeecCCCCHHHHHHHHHHHHHHcC--CCcCHHHHHHHHHHcCCCc-hHHHHH
Confidence 1347889999999999999998 9999999999999999999999887642 2234445889999999854 555555
Q ss_pred HHHHhh
Q 035561 672 PVALEG 677 (979)
Q Consensus 672 v~aa~~ 677 (979)
++.+..
T Consensus 223 l~~~~~ 228 (328)
T PRK00080 223 LRRVRD 228 (328)
T ss_pred HHHHHH
Confidence 554443
No 53
>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.
Probab=99.68 E-value=7.9e-16 Score=169.98 Aligned_cols=188 Identities=18% Similarity=0.204 Sum_probs=133.9
Q ss_pred CCCcccCcHHHHHHHHHHHHhhcChhHHHhcCCCCCceeEecCCCCCChHHHHHHHHHHcCCCEEEeechhhhhhhhccc
Q 035561 453 PLKDFASVESMREEINEVVAFLQNPSAFQEMGARAPRGVLIVGERGTGKTSLALAIAAEARVPVVNVEAQELEAGLWVGQ 532 (979)
Q Consensus 453 ~f~DIvGleevke~L~eiV~~L~~p~~f~~lG~~~P~gVLL~GPPGTGKTtLArAlA~elg~~~i~Is~sdL~~~~~vG~ 532 (979)
+|+|++|++++++.|...+..... ....+.+++|+||||||||++|+++|++++.++..++++... . .
T Consensus 2 ~~~~~iG~~~~~~~l~~~l~~~~~-------~~~~~~~~ll~Gp~G~GKT~la~~ia~~~~~~~~~~~~~~~~-~--~-- 69 (305)
T TIGR00635 2 LLAEFIGQEKVKEQLQLFIEAAKM-------RQEALDHLLLYGPPGLGKTTLAHIIANEMGVNLKITSGPALE-K--P-- 69 (305)
T ss_pred CHHHHcCHHHHHHHHHHHHHHHHh-------cCCCCCeEEEECCCCCCHHHHHHHHHHHhCCCEEEeccchhc-C--c--
Confidence 689999999999999877643221 123467899999999999999999999999988777665432 1 1
Q ss_pred chhhHHHHHHHHHhcCCeEEEEcCccccccccccccCCCchhhHHHHHHHHhhhcccc----------------cCCeEE
Q 035561 533 SASNVRELFQTARDLAPVIIFVEDFDLFAGVRGQFIHTKQQDHESFINQLLVELDGFE----------------KQDGVV 596 (979)
Q Consensus 533 ~~~~Ir~lF~~A~~~aP~ILfIDEIDaL~~~r~~~~~~~~~~~~~iln~LL~~LDg~~----------------~~~~Vi 596 (979)
..+...+... ..+.+|||||+|.+.+. ..+.|+..|++.. ...+++
T Consensus 70 --~~l~~~l~~~--~~~~vl~iDEi~~l~~~--------------~~e~l~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~ 131 (305)
T TIGR00635 70 --GDLAAILTNL--EEGDVLFIDEIHRLSPA--------------VEELLYPAMEDFRLDIVIGKGPSARSVRLDLPPFT 131 (305)
T ss_pred --hhHHHHHHhc--ccCCEEEEehHhhhCHH--------------HHHHhhHHHhhhheeeeeccCccccceeecCCCeE
Confidence 1222333322 25789999999988421 1122333333211 123478
Q ss_pred EEecccchhhchhhhhcCCceeeEeccCCCCHHHHHHHHHHHHHhccchhhhhhhhHHHHHHHcCCCCHHHHHHHHHHH
Q 035561 597 LMATTRNIKQIDEALQRPGRMDRIFNLQKPTQSEREKILRIAAQETMDEELIDLVDWRKVAEKTALLRPIELKLVPVAL 675 (979)
Q Consensus 597 VIATTN~pe~LDpALlRpgRFd~~I~~~~Pd~eeR~~IL~~~l~~~~~~~l~~dvdL~~LA~~T~GfsgaDL~~Lv~aa 675 (979)
+|++||++..+++++++ ||...+.+++|+.+++.+|++..+.... ...++..++.+++.+.|.. ..+..++..+
T Consensus 132 li~~t~~~~~l~~~l~s--R~~~~~~l~~l~~~e~~~il~~~~~~~~--~~~~~~al~~ia~~~~G~p-R~~~~ll~~~ 205 (305)
T TIGR00635 132 LVGATTRAGMLTSPLRD--RFGIILRLEFYTVEELAEIVSRSAGLLN--VEIEPEAALEIARRSRGTP-RIANRLLRRV 205 (305)
T ss_pred EEEecCCccccCHHHHh--hcceEEEeCCCCHHHHHHHHHHHHHHhC--CCcCHHHHHHHHHHhCCCc-chHHHHHHHH
Confidence 89999999999999999 9998999999999999999998887542 2334556788999999955 5555665544
No 54
>TIGR00763 lon ATP-dependent protease La. This protein is induced by heat shock and other stresses in E. coli, B. subtilis, and other species. The yeast member, designated PIM1, is located in the mitochondrial matrix, required for mitochondrial function, and also induced by heat shock.
Probab=99.67 E-value=4.7e-16 Score=192.41 Aligned_cols=166 Identities=24% Similarity=0.329 Sum_probs=126.1
Q ss_pred CcccCcHHHHHHHHHHHHhhcChhHHHhcCCCCCceeEecCCCCCChHHHHHHHHHHcCCCEEEeechhhhh--------
Q 035561 455 KDFASVESMREEINEVVAFLQNPSAFQEMGARAPRGVLIVGERGTGKTSLALAIAAEARVPVVNVEAQELEA-------- 526 (979)
Q Consensus 455 ~DIvGleevke~L~eiV~~L~~p~~f~~lG~~~P~gVLL~GPPGTGKTtLArAlA~elg~~~i~Is~sdL~~-------- 526 (979)
+++.|++++++.+.+.+...... +...+.++||+||||||||++|+++|+.++.+++.++++.+..
T Consensus 320 ~~~~G~~~~k~~i~~~~~~~~~~------~~~~~~~lll~GppG~GKT~lAk~iA~~l~~~~~~i~~~~~~~~~~i~g~~ 393 (775)
T TIGR00763 320 EDHYGLKKVKERILEYLAVQKLR------GKMKGPILCLVGPPGVGKTSLGKSIAKALNRKFVRFSLGGVRDEAEIRGHR 393 (775)
T ss_pred hhcCChHHHHHHHHHHHHHHHhh------cCCCCceEEEECCCCCCHHHHHHHHHHHhcCCeEEEeCCCcccHHHHcCCC
Confidence 35899999999998876542111 1122347999999999999999999999999999998754321
Q ss_pred hhhcccchhhHHHHHHHHHhcCCeEEEEcCccccccccccccCCCchhhHHHHHHHHhhhcc-----cc--------cCC
Q 035561 527 GLWVGQSASNVRELFQTARDLAPVIIFVEDFDLFAGVRGQFIHTKQQDHESFINQLLVELDG-----FE--------KQD 593 (979)
Q Consensus 527 ~~~vG~~~~~Ir~lF~~A~~~aP~ILfIDEIDaL~~~r~~~~~~~~~~~~~iln~LL~~LDg-----~~--------~~~ 593 (979)
..|.|.....+.+.|..+....| ||||||||.+.+... .. ..+.|+..||. |. ...
T Consensus 394 ~~~~g~~~g~i~~~l~~~~~~~~-villDEidk~~~~~~-------~~---~~~aLl~~ld~~~~~~f~d~~~~~~~d~s 462 (775)
T TIGR00763 394 RTYVGAMPGRIIQGLKKAKTKNP-LFLLDEIDKIGSSFR-------GD---PASALLEVLDPEQNNAFSDHYLDVPFDLS 462 (775)
T ss_pred CceeCCCCchHHHHHHHhCcCCC-EEEEechhhcCCccC-------CC---HHHHHHHhcCHHhcCccccccCCceeccC
Confidence 24677778888888988876566 789999999975321 11 23455555552 11 124
Q ss_pred eEEEEecccchhhchhhhhcCCceeeEeccCCCCHHHHHHHHHHHHH
Q 035561 594 GVVLMATTRNIKQIDEALQRPGRMDRIFNLQKPTQSEREKILRIAAQ 640 (979)
Q Consensus 594 ~ViVIATTN~pe~LDpALlRpgRFd~~I~~~~Pd~eeR~~IL~~~l~ 640 (979)
++++|+|||.++.+|++|++ ||+ .|+|+.|+.+++.+|++.++.
T Consensus 463 ~v~~I~TtN~~~~i~~~L~~--R~~-vi~~~~~~~~e~~~I~~~~l~ 506 (775)
T TIGR00763 463 KVIFIATANSIDTIPRPLLD--RME-VIELSGYTEEEKLEIAKKYLI 506 (775)
T ss_pred CEEEEEecCCchhCCHHHhC--Cee-EEecCCCCHHHHHHHHHHHHH
Confidence 68999999999999999999 995 789999999999999998873
No 55
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=99.66 E-value=7.6e-16 Score=172.24 Aligned_cols=181 Identities=23% Similarity=0.326 Sum_probs=129.0
Q ss_pred CCCCCCcccCcHHHHHH---HHHHHHhhcChhHHHhcCCCCCceeEecCCCCCChHHHHHHHHHHcCCCEEEeechhhhh
Q 035561 450 PPIPLKDFASVESMREE---INEVVAFLQNPSAFQEMGARAPRGVLIVGERGTGKTSLALAIAAEARVPVVNVEAQELEA 526 (979)
Q Consensus 450 ~~~~f~DIvGleevke~---L~eiV~~L~~p~~f~~lG~~~P~gVLL~GPPGTGKTtLArAlA~elg~~~i~Is~sdL~~ 526 (979)
+|.+++|++|++.+... |+..+ ......+++|||||||||||+|+.||+..+.+|..+|+..
T Consensus 19 RP~~lde~vGQ~HLlg~~~~lrr~v------------~~~~l~SmIl~GPPG~GKTTlA~liA~~~~~~f~~~sAv~--- 83 (436)
T COG2256 19 RPKSLDEVVGQEHLLGEGKPLRRAV------------EAGHLHSMILWGPPGTGKTTLARLIAGTTNAAFEALSAVT--- 83 (436)
T ss_pred CCCCHHHhcChHhhhCCCchHHHHH------------hcCCCceeEEECCCCCCHHHHHHHHHHhhCCceEEecccc---
Confidence 46789999999987643 33222 2233457999999999999999999999999999999743
Q ss_pred hhhcccchhhHHHHHHHHHhcC----CeEEEEcCccccccccccccCCCchhhHHHHHHHHhhhcccccCCeEEEEeccc
Q 035561 527 GLWVGQSASNVRELFQTARDLA----PVIIFVEDFDLFAGVRGQFIHTKQQDHESFINQLLVELDGFEKQDGVVLMATTR 602 (979)
Q Consensus 527 ~~~vG~~~~~Ir~lF~~A~~~a----P~ILfIDEIDaL~~~r~~~~~~~~~~~~~iln~LL~~LDg~~~~~~ViVIATTN 602 (979)
.+.+.+|++++.|+... ..|||||||+.+... + -..||-.++ ++.-++|-|||.
T Consensus 84 -----~gvkdlr~i~e~a~~~~~~gr~tiLflDEIHRfnK~--------Q------QD~lLp~vE---~G~iilIGATTE 141 (436)
T COG2256 84 -----SGVKDLREIIEEARKNRLLGRRTILFLDEIHRFNKA--------Q------QDALLPHVE---NGTIILIGATTE 141 (436)
T ss_pred -----ccHHHHHHHHHHHHHHHhcCCceEEEEehhhhcChh--------h------hhhhhhhhc---CCeEEEEeccCC
Confidence 34578999999996543 489999999988421 1 124554443 344455556676
Q ss_pred chh-hchhhhhcCCceeeEeccCCCCHHHHHHHHHHHHHhccch-----hhhhhhhHHHHHHHcCCCCHHHHHH
Q 035561 603 NIK-QIDEALQRPGRMDRIFNLQKPTQSEREKILRIAAQETMDE-----ELIDLVDWRKVAEKTALLRPIELKL 670 (979)
Q Consensus 603 ~pe-~LDpALlRpgRFd~~I~~~~Pd~eeR~~IL~~~l~~~~~~-----~l~~dvdL~~LA~~T~GfsgaDL~~ 670 (979)
+|. .|++||++++ +++.+.+.+.++..++++..+...... ...++.-++.|+..++|-..+-|..
T Consensus 142 NPsF~ln~ALlSR~---~vf~lk~L~~~di~~~l~ra~~~~~rgl~~~~~~i~~~a~~~l~~~s~GD~R~aLN~ 212 (436)
T COG2256 142 NPSFELNPALLSRA---RVFELKPLSSEDIKKLLKRALLDEERGLGGQIIVLDEEALDYLVRLSNGDARRALNL 212 (436)
T ss_pred CCCeeecHHHhhhh---heeeeecCCHHHHHHHHHHHHhhhhcCCCcccccCCHHHHHHHHHhcCchHHHHHHH
Confidence 776 8999999955 688999999999999999854432110 1124556777888888744433333
No 56
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=99.64 E-value=5.7e-15 Score=181.05 Aligned_cols=165 Identities=21% Similarity=0.332 Sum_probs=125.1
Q ss_pred CCCcccCcHHHHHHHHHHHHhhcChhHHHhcCCCCCceeEecCCCCCChHHHHHHHHHHc----------CCCEEEeech
Q 035561 453 PLKDFASVESMREEINEVVAFLQNPSAFQEMGARAPRGVLIVGERGTGKTSLALAIAAEA----------RVPVVNVEAQ 522 (979)
Q Consensus 453 ~f~DIvGleevke~L~eiV~~L~~p~~f~~lG~~~P~gVLL~GPPGTGKTtLArAlA~el----------g~~~i~Is~s 522 (979)
.++.++|.++..+.+.+++.. +.+.++||+||||||||++|+++|... +..++.++.+
T Consensus 184 ~~~~liGR~~ei~~~i~iL~r------------~~~~n~LLvGppGvGKT~lae~la~~i~~~~vP~~l~~~~~~~l~~~ 251 (758)
T PRK11034 184 GIDPLIGREKELERAIQVLCR------------RRKNNPLLVGESGVGKTAIAEGLAWRIVQGDVPEVMADCTIYSLDIG 251 (758)
T ss_pred CCCcCcCCCHHHHHHHHHHhc------------cCCCCeEEECCCCCCHHHHHHHHHHHHHhcCCCchhcCCeEEeccHH
Confidence 577899999666666544322 234578999999999999999999874 4566777776
Q ss_pred hhhh-hhhcccchhhHHHHHHHHHhcCCeEEEEcCccccccccccccCCCchhhHHHHHHHHhhhcccccCCeEEEEecc
Q 035561 523 ELEA-GLWVGQSASNVRELFQTARDLAPVIIFVEDFDLFAGVRGQFIHTKQQDHESFINQLLVELDGFEKQDGVVLMATT 601 (979)
Q Consensus 523 dL~~-~~~vG~~~~~Ir~lF~~A~~~aP~ILfIDEIDaL~~~r~~~~~~~~~~~~~iln~LL~~LDg~~~~~~ViVIATT 601 (979)
.+.. ..|.|+.+.+++.+|+.+....++||||||+|.|++.++. .+++.+...++..++ ....+.+|+||
T Consensus 252 ~llaG~~~~Ge~e~rl~~l~~~l~~~~~~ILfIDEIh~L~g~g~~--~~g~~d~~nlLkp~L-------~~g~i~vIgAT 322 (758)
T PRK11034 252 SLLAGTKYRGDFEKRFKALLKQLEQDTNSILFIDEIHTIIGAGAA--SGGQVDAANLIKPLL-------SSGKIRVIGST 322 (758)
T ss_pred HHhcccchhhhHHHHHHHHHHHHHhcCCCEEEeccHHHHhccCCC--CCcHHHHHHHHHHHH-------hCCCeEEEecC
Confidence 6653 3578899999999999998888999999999999875432 112222233333333 34568899999
Q ss_pred cchh-----hchhhhhcCCceeeEeccCCCCHHHHHHHHHHHHHh
Q 035561 602 RNIK-----QIDEALQRPGRMDRIFNLQKPTQSEREKILRIAAQE 641 (979)
Q Consensus 602 N~pe-----~LDpALlRpgRFd~~I~~~~Pd~eeR~~IL~~~l~~ 641 (979)
|.++ ..|++|.| ||+ .|.++.|+.+++..||+.+...
T Consensus 323 t~~E~~~~~~~D~AL~r--RFq-~I~v~ePs~~~~~~IL~~~~~~ 364 (758)
T PRK11034 323 TYQEFSNIFEKDRALAR--RFQ-KIDITEPSIEETVQIINGLKPK 364 (758)
T ss_pred ChHHHHHHhhccHHHHh--hCc-EEEeCCCCHHHHHHHHHHHHHH
Confidence 9865 57999999 996 7999999999999999987654
No 57
>PRK04195 replication factor C large subunit; Provisional
Probab=99.63 E-value=5.7e-15 Score=173.98 Aligned_cols=208 Identities=18% Similarity=0.214 Sum_probs=147.9
Q ss_pred cccCCCCCCCCcccCcHHHHHHHHHHHHhhcChhHHHhcCCCCCceeEecCCCCCChHHHHHHHHHHcCCCEEEeechhh
Q 035561 445 KRVKNPPIPLKDFASVESMREEINEVVAFLQNPSAFQEMGARAPRGVLIVGERGTGKTSLALAIAAEARVPVVNVEAQEL 524 (979)
Q Consensus 445 ~~v~~~~~~f~DIvGleevke~L~eiV~~L~~p~~f~~lG~~~P~gVLL~GPPGTGKTtLArAlA~elg~~~i~Is~sdL 524 (979)
+..+++|.+++|++|++++++.|...+....+ | .+++++||+||||||||++|+++|++++.+++.+++++.
T Consensus 4 W~eKyrP~~l~dlvg~~~~~~~l~~~l~~~~~-------g-~~~~~lLL~GppG~GKTtla~ala~el~~~~ielnasd~ 75 (482)
T PRK04195 4 WVEKYRPKTLSDVVGNEKAKEQLREWIESWLK-------G-KPKKALLLYGPPGVGKTSLAHALANDYGWEVIELNASDQ 75 (482)
T ss_pred chhhcCCCCHHHhcCCHHHHHHHHHHHHHHhc-------C-CCCCeEEEECCCCCCHHHHHHHHHHHcCCCEEEEccccc
Confidence 34578889999999999999999988755331 2 337889999999999999999999999999999999875
Q ss_pred hhhhhcccchhhHHHHHHHHHh------cCCeEEEEcCccccccccccccCCCchhhHHHHHHHHhhhcccccCCeEEEE
Q 035561 525 EAGLWVGQSASNVRELFQTARD------LAPVIIFVEDFDLFAGVRGQFIHTKQQDHESFINQLLVELDGFEKQDGVVLM 598 (979)
Q Consensus 525 ~~~~~vG~~~~~Ir~lF~~A~~------~aP~ILfIDEIDaL~~~r~~~~~~~~~~~~~iln~LL~~LDg~~~~~~ViVI 598 (979)
.. ...++.+...+.. ..+.||+|||+|.+.+.. ....++.|+..++. .+..+|
T Consensus 76 r~-------~~~i~~~i~~~~~~~sl~~~~~kvIiIDEaD~L~~~~----------d~~~~~aL~~~l~~----~~~~iI 134 (482)
T PRK04195 76 RT-------ADVIERVAGEAATSGSLFGARRKLILLDEVDGIHGNE----------DRGGARAILELIKK----AKQPII 134 (482)
T ss_pred cc-------HHHHHHHHHHhhccCcccCCCCeEEEEecCccccccc----------chhHHHHHHHHHHc----CCCCEE
Confidence 31 1233433333322 247899999999885321 11234455555542 233456
Q ss_pred ecccchhhchh-hhhcCCceeeEeccCCCCHHHHHHHHHHHHHhccchhhhhhhhHHHHHHHcCCCCHHHHHHHHHHHhh
Q 035561 599 ATTRNIKQIDE-ALQRPGRMDRIFNLQKPTQSEREKILRIAAQETMDEELIDLVDWRKVAEKTALLRPIELKLVPVALEG 677 (979)
Q Consensus 599 ATTN~pe~LDp-ALlRpgRFd~~I~~~~Pd~eeR~~IL~~~l~~~~~~~l~~dvdL~~LA~~T~GfsgaDL~~Lv~aa~~ 677 (979)
.+||.+..+++ .|++ |+ ..|.|++|+.+++..+|+..+.... ...++..+..|++.+.| |+..+.+.++.
T Consensus 135 li~n~~~~~~~k~Lrs--r~-~~I~f~~~~~~~i~~~L~~i~~~eg--i~i~~eaL~~Ia~~s~G----DlR~ain~Lq~ 205 (482)
T PRK04195 135 LTANDPYDPSLRELRN--AC-LMIEFKRLSTRSIVPVLKRICRKEG--IECDDEALKEIAERSGG----DLRSAINDLQA 205 (482)
T ss_pred EeccCccccchhhHhc--cc-eEEEecCCCHHHHHHHHHHHHHHcC--CCCCHHHHHHHHHHcCC----CHHHHHHHHHH
Confidence 67888888877 6665 33 6899999999999999999887653 22345568888988766 77777777766
Q ss_pred hhhccCCCChHHH
Q 035561 678 SAFRSKFLDTDEL 690 (979)
Q Consensus 678 aa~r~~~~s~~ei 690 (979)
.+.....++.+++
T Consensus 206 ~a~~~~~it~~~v 218 (482)
T PRK04195 206 IAEGYGKLTLEDV 218 (482)
T ss_pred HhcCCCCCcHHHH
Confidence 5544444555544
No 58
>COG2255 RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair]
Probab=99.60 E-value=1.5e-14 Score=155.79 Aligned_cols=184 Identities=21% Similarity=0.266 Sum_probs=137.6
Q ss_pred CCCCCCCCcccCcHHHHHHHHHHHHhhcChhHHHhcCCCCCceeEecCCCCCChHHHHHHHHHHcCCCEEEeechhhhhh
Q 035561 448 KNPPIPLKDFASVESMREEINEVVAFLQNPSAFQEMGARAPRGVLIVGERGTGKTSLALAIAAEARVPVVNVEAQELEAG 527 (979)
Q Consensus 448 ~~~~~~f~DIvGleevke~L~eiV~~L~~p~~f~~lG~~~P~gVLL~GPPGTGKTtLArAlA~elg~~~i~Is~sdL~~~ 527 (979)
.-+|..|+|++|++++|+.|+-++..-+. .-...-++|||||||.||||||..+|+++|+++-..++..+.
T Consensus 19 ~lRP~~l~efiGQ~~vk~~L~ifI~AAk~-------r~e~lDHvLl~GPPGlGKTTLA~IIA~Emgvn~k~tsGp~le-- 89 (332)
T COG2255 19 SLRPKTLDEFIGQEKVKEQLQIFIKAAKK-------RGEALDHVLLFGPPGLGKTTLAHIIANELGVNLKITSGPALE-- 89 (332)
T ss_pred ccCcccHHHhcChHHHHHHHHHHHHHHHh-------cCCCcCeEEeeCCCCCcHHHHHHHHHHHhcCCeEeccccccc--
Confidence 44577899999999999999977654222 123456899999999999999999999999999999988774
Q ss_pred hhcccchhhHHHHHHHHHhcCCeEEEEcCccccccccccccCCCchhhHHHHHHHHhhhcccc----------c------
Q 035561 528 LWVGQSASNVRELFQTARDLAPVIIFVEDFDLFAGVRGQFIHTKQQDHESFINQLLVELDGFE----------K------ 591 (979)
Q Consensus 528 ~~vG~~~~~Ir~lF~~A~~~aP~ILfIDEIDaL~~~r~~~~~~~~~~~~~iln~LL~~LDg~~----------~------ 591 (979)
+ .| .+-.++.... ...|||||||+++.+. +-.-|.-.|++|. .
T Consensus 90 K-~g----DlaaiLt~Le--~~DVLFIDEIHrl~~~--------------vEE~LYpaMEDf~lDI~IG~gp~Arsv~ld 148 (332)
T COG2255 90 K-PG----DLAAILTNLE--EGDVLFIDEIHRLSPA--------------VEEVLYPAMEDFRLDIIIGKGPAARSIRLD 148 (332)
T ss_pred C-hh----hHHHHHhcCC--cCCeEEEehhhhcChh--------------HHHHhhhhhhheeEEEEEccCCccceEecc
Confidence 2 22 3333333332 3689999999998532 2223444566541 1
Q ss_pred CCeEEEEecccchhhchhhhhcCCceeeEeccCCCCHHHHHHHHHHHHHhccchhhhhhhhHHHHHHHcCCCCH
Q 035561 592 QDGVVLMATTRNIKQIDEALQRPGRMDRIFNLQKPTQSEREKILRIAAQETMDEELIDLVDWRKVAEKTALLRP 665 (979)
Q Consensus 592 ~~~ViVIATTN~pe~LDpALlRpgRFd~~I~~~~Pd~eeR~~IL~~~l~~~~~~~l~~dvdL~~LA~~T~Gfsg 665 (979)
-+++-+|+||.+...|...|+. ||....++..++.++..+|++...+... ...++.....+|+++.|-..
T Consensus 149 LppFTLIGATTr~G~lt~PLrd--RFGi~~rlefY~~~eL~~Iv~r~a~~l~--i~i~~~~a~eIA~rSRGTPR 218 (332)
T COG2255 149 LPPFTLIGATTRAGMLTNPLRD--RFGIIQRLEFYTVEELEEIVKRSAKILG--IEIDEEAALEIARRSRGTPR 218 (332)
T ss_pred CCCeeEeeeccccccccchhHH--hcCCeeeeecCCHHHHHHHHHHHHHHhC--CCCChHHHHHHHHhccCCcH
Confidence 1357889999999999999999 9999999999999999999998876442 22344556789999988443
No 59
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.59 E-value=3.3e-14 Score=166.63 Aligned_cols=176 Identities=17% Similarity=0.269 Sum_probs=127.7
Q ss_pred CCCCCCCCcccCcHHHHHHHHHHHHhhcChhHHHhcCCCCCceeEecCCCCCChHHHHHHHHHHcCC-------------
Q 035561 448 KNPPIPLKDFASVESMREEINEVVAFLQNPSAFQEMGARAPRGVLIVGERGTGKTSLALAIAAEARV------------- 514 (979)
Q Consensus 448 ~~~~~~f~DIvGleevke~L~eiV~~L~~p~~f~~lG~~~P~gVLL~GPPGTGKTtLArAlA~elg~------------- 514 (979)
+.+|.+|+|++|++.+++.|+..+. ..+.|.++||+|||||||||+|+++|+.++.
T Consensus 7 kyRP~~~~divGq~~i~~~L~~~i~-----------~~~l~~~~Lf~GPpGtGKTTlA~~lA~~l~~~~~~~~~pc~~c~ 75 (472)
T PRK14962 7 KYRPKTFSEVVGQDHVKKLIINALK-----------KNSISHAYIFAGPRGTGKTTVARILAKSLNCENRKGVEPCNECR 75 (472)
T ss_pred HHCCCCHHHccCcHHHHHHHHHHHH-----------cCCCCeEEEEECCCCCCHHHHHHHHHHHhccccCCCCCCCcccH
Confidence 5678899999999999888876542 1235667999999999999999999999864
Q ss_pred -----------CEEEeechhhhhhhhcccchhhHHHHHHHHHhc----CCeEEEEcCccccccccccccCCCchhhHHHH
Q 035561 515 -----------PVVNVEAQELEAGLWVGQSASNVRELFQTARDL----APVIIFVEDFDLFAGVRGQFIHTKQQDHESFI 579 (979)
Q Consensus 515 -----------~~i~Is~sdL~~~~~vG~~~~~Ir~lF~~A~~~----aP~ILfIDEIDaL~~~r~~~~~~~~~~~~~il 579 (979)
.++.++++. ..+...+|.+.+.+... ...||||||+|.+. ....
T Consensus 76 ~c~~i~~g~~~dv~el~aa~-------~~gid~iR~i~~~~~~~p~~~~~kVvIIDE~h~Lt--------------~~a~ 134 (472)
T PRK14962 76 ACRSIDEGTFMDVIELDAAS-------NRGIDEIRKIRDAVGYRPMEGKYKVYIIDEVHMLT--------------KEAF 134 (472)
T ss_pred HHHHHhcCCCCccEEEeCcc-------cCCHHHHHHHHHHHhhChhcCCeEEEEEEChHHhH--------------HHHH
Confidence 233343321 12234566666665431 34799999999883 2345
Q ss_pred HHHHhhhcccccCCeEEEEecccchhhchhhhhcCCceeeEeccCCCCHHHHHHHHHHHHHhccchhhhhhhhHHHHHHH
Q 035561 580 NQLLVELDGFEKQDGVVLMATTRNIKQIDEALQRPGRMDRIFNLQKPTQSEREKILRIAAQETMDEELIDLVDWRKVAEK 659 (979)
Q Consensus 580 n~LL~~LDg~~~~~~ViVIATTN~pe~LDpALlRpgRFd~~I~~~~Pd~eeR~~IL~~~l~~~~~~~l~~dvdL~~LA~~ 659 (979)
+.|+..++.. ...+++|++|+.+..+++++++ |+ ..+.|.+|+.++...+++..++... ...++..+..|++.
T Consensus 135 ~~LLk~LE~p--~~~vv~Ilattn~~kl~~~L~S--R~-~vv~f~~l~~~el~~~L~~i~~~eg--i~i~~eal~~Ia~~ 207 (472)
T PRK14962 135 NALLKTLEEP--PSHVVFVLATTNLEKVPPTIIS--RC-QVIEFRNISDELIIKRLQEVAEAEG--IEIDREALSFIAKR 207 (472)
T ss_pred HHHHHHHHhC--CCcEEEEEEeCChHhhhHHHhc--Cc-EEEEECCccHHHHHHHHHHHHHHcC--CCCCHHHHHHHHHH
Confidence 6777777653 2346666666678899999999 66 5899999999999999999887542 23445567888988
Q ss_pred cCC
Q 035561 660 TAL 662 (979)
Q Consensus 660 T~G 662 (979)
+.|
T Consensus 208 s~G 210 (472)
T PRK14962 208 ASG 210 (472)
T ss_pred hCC
Confidence 876
No 60
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.59 E-value=2.9e-14 Score=165.75 Aligned_cols=177 Identities=18% Similarity=0.232 Sum_probs=131.3
Q ss_pred CCCCCCCCcccCcHHHHHHHHHHHHhhcChhHHHhcCCCCCceeEecCCCCCChHHHHHHHHHHcCCC------------
Q 035561 448 KNPPIPLKDFASVESMREEINEVVAFLQNPSAFQEMGARAPRGVLIVGERGTGKTSLALAIAAEARVP------------ 515 (979)
Q Consensus 448 ~~~~~~f~DIvGleevke~L~eiV~~L~~p~~f~~lG~~~P~gVLL~GPPGTGKTtLArAlA~elg~~------------ 515 (979)
+++|.+|+|++|++.+.+.|+..+.. .+.|..+||+||||||||++|+.+|+.++..
T Consensus 11 KyRP~~f~dvVGQe~iv~~L~~~i~~-----------~ri~ha~Lf~GP~GtGKTTlAriLAk~Lnce~~~~~~pCg~C~ 79 (484)
T PRK14956 11 KYRPQFFRDVIHQDLAIGALQNALKS-----------GKIGHAYIFFGPRGVGKTTIARILAKRLNCENPIGNEPCNECT 79 (484)
T ss_pred HhCCCCHHHHhChHHHHHHHHHHHHc-----------CCCCeEEEEECCCCCCHHHHHHHHHHhcCcccccCccccCCCc
Confidence 56788999999999999988765531 2345569999999999999999999998753
Q ss_pred ------------EEEeechhhhhhhhcccchhhHHHHHHHHHh----cCCeEEEEcCccccccccccccCCCchhhHHHH
Q 035561 516 ------------VVNVEAQELEAGLWVGQSASNVRELFQTARD----LAPVIIFVEDFDLFAGVRGQFIHTKQQDHESFI 579 (979)
Q Consensus 516 ------------~i~Is~sdL~~~~~vG~~~~~Ir~lF~~A~~----~aP~ILfIDEIDaL~~~r~~~~~~~~~~~~~il 579 (979)
++.+++. ...+...+|++.+.+.. ....|+||||+|.+. ....
T Consensus 80 sC~~i~~g~~~dviEIdaa-------s~~gVd~IReL~e~l~~~p~~g~~KV~IIDEah~Ls--------------~~A~ 138 (484)
T PRK14956 80 SCLEITKGISSDVLEIDAA-------SNRGIENIRELRDNVKFAPMGGKYKVYIIDEVHMLT--------------DQSF 138 (484)
T ss_pred HHHHHHccCCccceeechh-------hcccHHHHHHHHHHHHhhhhcCCCEEEEEechhhcC--------------HHHH
Confidence 2222221 11234456666665542 235799999999882 3467
Q ss_pred HHHHhhhcccccCCeEEEEecccchhhchhhhhcCCceeeEeccCCCCHHHHHHHHHHHHHhccchhhhhhhhHHHHHHH
Q 035561 580 NQLLVELDGFEKQDGVVLMATTRNIKQIDEALQRPGRMDRIFNLQKPTQSEREKILRIAAQETMDEELIDLVDWRKVAEK 659 (979)
Q Consensus 580 n~LL~~LDg~~~~~~ViVIATTN~pe~LDpALlRpgRFd~~I~~~~Pd~eeR~~IL~~~l~~~~~~~l~~dvdL~~LA~~ 659 (979)
|.||..|+. ....+++|.+|+.++.|++++++ |+ ..+.|..++.++..+.++..+.... ...++..+..||+.
T Consensus 139 NALLKtLEE--Pp~~viFILaTte~~kI~~TI~S--RC-q~~~f~~ls~~~i~~~L~~i~~~Eg--i~~e~eAL~~Ia~~ 211 (484)
T PRK14956 139 NALLKTLEE--PPAHIVFILATTEFHKIPETILS--RC-QDFIFKKVPLSVLQDYSEKLCKIEN--VQYDQEGLFWIAKK 211 (484)
T ss_pred HHHHHHhhc--CCCceEEEeecCChhhccHHHHh--hh-heeeecCCCHHHHHHHHHHHHHHcC--CCCCHHHHHHHHHH
Confidence 788888875 34567788888889999999999 55 5788999999999999998887542 23456678889999
Q ss_pred cCCC
Q 035561 660 TALL 663 (979)
Q Consensus 660 T~Gf 663 (979)
++|-
T Consensus 212 S~Gd 215 (484)
T PRK14956 212 GDGS 215 (484)
T ss_pred cCCh
Confidence 9883
No 61
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=99.59 E-value=1.5e-14 Score=180.17 Aligned_cols=191 Identities=21% Similarity=0.302 Sum_probs=137.3
Q ss_pred CCCCCCcccCcHHHHHHHHHHHHhhcChhHHHhcCCCCCceeEecCCCCCChHHHHHHHHHHc----------CCCEEEe
Q 035561 450 PPIPLKDFASVESMREEINEVVAFLQNPSAFQEMGARAPRGVLIVGERGTGKTSLALAIAAEA----------RVPVVNV 519 (979)
Q Consensus 450 ~~~~f~DIvGleevke~L~eiV~~L~~p~~f~~lG~~~P~gVLL~GPPGTGKTtLArAlA~el----------g~~~i~I 519 (979)
++-++++++|.++. ++.++..|.. +...+++|+||||||||++|+.+|... +.+++.+
T Consensus 182 r~~~ld~~iGr~~e---i~~~i~~l~r---------~~~~n~lLvG~pGvGKTal~~~La~~i~~~~v~~~l~~~~i~~l 249 (852)
T TIGR03345 182 REGKIDPVLGRDDE---IRQMIDILLR---------RRQNNPILTGEAGVGKTAVVEGLALRIAAGDVPPALRNVRLLSL 249 (852)
T ss_pred cCCCCCcccCCHHH---HHHHHHHHhc---------CCcCceeEECCCCCCHHHHHHHHHHHHhhCCCCccccCCeEEEe
Confidence 34578999999975 4444444322 223479999999999999999999976 2557888
Q ss_pred echhhhh-hhhcccchhhHHHHHHHHHh-cCCeEEEEcCccccccccccccCCCchhhHHHHHHHHhhhcccccCCeEEE
Q 035561 520 EAQELEA-GLWVGQSASNVRELFQTARD-LAPVIIFVEDFDLFAGVRGQFIHTKQQDHESFINQLLVELDGFEKQDGVVL 597 (979)
Q Consensus 520 s~sdL~~-~~~vG~~~~~Ir~lF~~A~~-~aP~ILfIDEIDaL~~~r~~~~~~~~~~~~~iln~LL~~LDg~~~~~~ViV 597 (979)
+.+.+.+ ..+.|+.+.+++.+|+.++. ..++||||||+|.+.+.++. .++.+. .|.|+-.+ ....+.+
T Consensus 250 ~l~~l~ag~~~~ge~e~~lk~ii~e~~~~~~~~ILfIDEih~l~~~g~~---~~~~d~---~n~Lkp~l----~~G~l~~ 319 (852)
T TIGR03345 250 DLGLLQAGASVKGEFENRLKSVIDEVKASPQPIILFIDEAHTLIGAGGQ---AGQGDA---ANLLKPAL----ARGELRT 319 (852)
T ss_pred ehhhhhcccccchHHHHHHHHHHHHHHhcCCCeEEEEeChHHhccCCCc---cccccH---HHHhhHHh----hCCCeEE
Confidence 8887763 35789999999999999975 46899999999999876532 112222 22233222 2355778
Q ss_pred Eecccchh-----hchhhhhcCCceeeEeccCCCCHHHHHHHHHHHHHhcc--chhhhhhhhHHHHHHHcCCCCH
Q 035561 598 MATTRNIK-----QIDEALQRPGRMDRIFNLQKPTQSEREKILRIAAQETM--DEELIDLVDWRKVAEKTALLRP 665 (979)
Q Consensus 598 IATTN~pe-----~LDpALlRpgRFd~~I~~~~Pd~eeR~~IL~~~l~~~~--~~~l~~dvdL~~LA~~T~Gfsg 665 (979)
||||+..+ .+||||.| ||. .|.|+.|+.+++..||+.+.+... ..-...+..+..++..+.+|-+
T Consensus 320 IgaTT~~e~~~~~~~d~AL~r--Rf~-~i~v~eps~~~~~~iL~~~~~~~e~~~~v~i~d~al~~~~~ls~ryi~ 391 (852)
T TIGR03345 320 IAATTWAEYKKYFEKDPALTR--RFQ-VVKVEEPDEETAIRMLRGLAPVLEKHHGVLILDEAVVAAVELSHRYIP 391 (852)
T ss_pred EEecCHHHHhhhhhccHHHHH--hCe-EEEeCCCCHHHHHHHHHHHHHhhhhcCCCeeCHHHHHHHHHHcccccc
Confidence 88887643 48999999 995 899999999999999876654321 1122456677888888877754
No 62
>PRK12323 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.58 E-value=2.2e-14 Score=170.58 Aligned_cols=192 Identities=17% Similarity=0.215 Sum_probs=136.4
Q ss_pred CCCCCCCCcccCcHHHHHHHHHHHHhhcChhHHHhcCCCCCceeEecCCCCCChHHHHHHHHHHcCCC------------
Q 035561 448 KNPPIPLKDFASVESMREEINEVVAFLQNPSAFQEMGARAPRGVLIVGERGTGKTSLALAIAAEARVP------------ 515 (979)
Q Consensus 448 ~~~~~~f~DIvGleevke~L~eiV~~L~~p~~f~~lG~~~P~gVLL~GPPGTGKTtLArAlA~elg~~------------ 515 (979)
++++.+|+||+|++.+++.|+..+.. .+.+..+||+||+|||||++|+.+|+.+++.
T Consensus 9 KYRPqtFddVIGQe~vv~~L~~al~~-----------gRLpHA~LFtGP~GvGKTTLAriLAkaLnC~~p~~~~g~~~~P 77 (700)
T PRK12323 9 KWRPRDFTTLVGQEHVVRALTHALEQ-----------QRLHHAYLFTGTRGVGKTTLSRILAKSLNCTGADGEGGITAQP 77 (700)
T ss_pred HhCCCcHHHHcCcHHHHHHHHHHHHh-----------CCCceEEEEECCCCCCHHHHHHHHHHHhcCCCccccccCCCCC
Confidence 57788999999999999999876642 2345678999999999999999999999761
Q ss_pred EEEe-echhhhhhhh---------cccchhhHHHHHHHHHh----cCCeEEEEcCccccccccccccCCCchhhHHHHHH
Q 035561 516 VVNV-EAQELEAGLW---------VGQSASNVRELFQTARD----LAPVIIFVEDFDLFAGVRGQFIHTKQQDHESFINQ 581 (979)
Q Consensus 516 ~i~I-s~sdL~~~~~---------vG~~~~~Ir~lF~~A~~----~aP~ILfIDEIDaL~~~r~~~~~~~~~~~~~iln~ 581 (979)
.-.+ +|..+..+.+ ...+...+|++.+.+.. ....|++|||+|.|. ....|.
T Consensus 78 CG~C~sC~~I~aG~hpDviEIdAas~~gVDdIReLie~~~~~P~~gr~KViIIDEah~Ls--------------~~AaNA 143 (700)
T PRK12323 78 CGQCRACTEIDAGRFVDYIEMDAASNRGVDEMAQLLDKAVYAPTAGRFKVYMIDEVHMLT--------------NHAFNA 143 (700)
T ss_pred CcccHHHHHHHcCCCCcceEecccccCCHHHHHHHHHHHHhchhcCCceEEEEEChHhcC--------------HHHHHH
Confidence 1001 1111110100 01234567777776543 235799999999882 345688
Q ss_pred HHhhhcccccCCeEEEEecccchhhchhhhhcCCceeeEeccCCCCHHHHHHHHHHHHHhccchhhhhhhhHHHHHHHcC
Q 035561 582 LLVELDGFEKQDGVVLMATTRNIKQIDEALQRPGRMDRIFNLQKPTQSEREKILRIAAQETMDEELIDLVDWRKVAEKTA 661 (979)
Q Consensus 582 LL~~LDg~~~~~~ViVIATTN~pe~LDpALlRpgRFd~~I~~~~Pd~eeR~~IL~~~l~~~~~~~l~~dvdL~~LA~~T~ 661 (979)
||+.|+. ...++++|.+||+++.|.+.+++ |+ ..+.|+.++.++..+.|+..+.... ...++..+..|++.+.
T Consensus 144 LLKTLEE--PP~~v~FILaTtep~kLlpTIrS--RC-q~f~f~~ls~eei~~~L~~Il~~Eg--i~~d~eAL~~IA~~A~ 216 (700)
T PRK12323 144 MLKTLEE--PPEHVKFILATTDPQKIPVTVLS--RC-LQFNLKQMPPGHIVSHLDAILGEEG--IAHEVNALRLLAQAAQ 216 (700)
T ss_pred HHHhhcc--CCCCceEEEEeCChHhhhhHHHH--HH-HhcccCCCChHHHHHHHHHHHHHcC--CCCCHHHHHHHHHHcC
Confidence 8988875 34567788888899999999999 55 7899999999999999998876542 1233445778888888
Q ss_pred CCCHHHHHHHH
Q 035561 662 LLRPIELKLVP 672 (979)
Q Consensus 662 GfsgaDL~~Lv 672 (979)
| +..+..+++
T Consensus 217 G-s~RdALsLL 226 (700)
T PRK12323 217 G-SMRDALSLT 226 (700)
T ss_pred C-CHHHHHHHH
Confidence 8 444554544
No 63
>PLN03025 replication factor C subunit; Provisional
Probab=99.58 E-value=4e-14 Score=158.34 Aligned_cols=201 Identities=16% Similarity=0.176 Sum_probs=135.8
Q ss_pred cCCCCCCCCcccCcHHHHHHHHHHHHhhcChhHHHhcCCCCCceeEecCCCCCChHHHHHHHHHHcC-----CCEEEeec
Q 035561 447 VKNPPIPLKDFASVESMREEINEVVAFLQNPSAFQEMGARAPRGVLIVGERGTGKTSLALAIAAEAR-----VPVVNVEA 521 (979)
Q Consensus 447 v~~~~~~f~DIvGleevke~L~eiV~~L~~p~~f~~lG~~~P~gVLL~GPPGTGKTtLArAlA~elg-----~~~i~Is~ 521 (979)
.+++|.+|+|++|++++.+.|+.++.. .+. .++|||||||||||++|+++|+++. ..++.+++
T Consensus 5 ~kyrP~~l~~~~g~~~~~~~L~~~~~~-----------~~~-~~lll~Gp~G~GKTtla~~la~~l~~~~~~~~~~eln~ 72 (319)
T PLN03025 5 EKYRPTKLDDIVGNEDAVSRLQVIARD-----------GNM-PNLILSGPPGTGKTTSILALAHELLGPNYKEAVLELNA 72 (319)
T ss_pred hhcCCCCHHHhcCcHHHHHHHHHHHhc-----------CCC-ceEEEECCCCCCHHHHHHHHHHHHhcccCccceeeecc
Confidence 367889999999999999988865431 112 3599999999999999999999973 34667777
Q ss_pred hhhhhhhhcccchhhHHHHHHHHH-------hcCCeEEEEcCccccccccccccCCCchhhHHHHHHHHhhhcccccCCe
Q 035561 522 QELEAGLWVGQSASNVRELFQTAR-------DLAPVIIFVEDFDLFAGVRGQFIHTKQQDHESFINQLLVELDGFEKQDG 594 (979)
Q Consensus 522 sdL~~~~~vG~~~~~Ir~lF~~A~-------~~aP~ILfIDEIDaL~~~r~~~~~~~~~~~~~iln~LL~~LDg~~~~~~ 594 (979)
++.. + ...+++...... ...+.|++|||+|.+.. ...+.|+..|+.+.. .
T Consensus 73 sd~~-~------~~~vr~~i~~~~~~~~~~~~~~~kviiiDE~d~lt~--------------~aq~aL~~~lE~~~~--~ 129 (319)
T PLN03025 73 SDDR-G------IDVVRNKIKMFAQKKVTLPPGRHKIVILDEADSMTS--------------GAQQALRRTMEIYSN--T 129 (319)
T ss_pred cccc-c------HHHHHHHHHHHHhccccCCCCCeEEEEEechhhcCH--------------HHHHHHHHHHhcccC--C
Confidence 6532 1 123343332211 12357999999998832 123445555554433 2
Q ss_pred EEEEecccchhhchhhhhcCCceeeEeccCCCCHHHHHHHHHHHHHhccchhhhhhhhHHHHHHHcCCCCHHHHHHHHHH
Q 035561 595 VVLMATTRNIKQIDEALQRPGRMDRIFNLQKPTQSEREKILRIAAQETMDEELIDLVDWRKVAEKTALLRPIELKLVPVA 674 (979)
Q Consensus 595 ViVIATTN~pe~LDpALlRpgRFd~~I~~~~Pd~eeR~~IL~~~l~~~~~~~l~~dvdL~~LA~~T~GfsgaDL~~Lv~a 674 (979)
..++.+||.+..+.++|++ |. ..++|++|+.++....++..++.... ..++..+..++..+.| |+..+.+.
T Consensus 130 t~~il~~n~~~~i~~~L~S--Rc-~~i~f~~l~~~~l~~~L~~i~~~egi--~i~~~~l~~i~~~~~g----DlR~aln~ 200 (319)
T PLN03025 130 TRFALACNTSSKIIEPIQS--RC-AIVRFSRLSDQEILGRLMKVVEAEKV--PYVPEGLEAIIFTADG----DMRQALNN 200 (319)
T ss_pred ceEEEEeCCccccchhHHH--hh-hcccCCCCCHHHHHHHHHHHHHHcCC--CCCHHHHHHHHHHcCC----CHHHHHHH
Confidence 3455677888888899998 54 58999999999999999998876532 2344567888887765 77777666
Q ss_pred HhhhhhccCCCChHHHh
Q 035561 675 LEGSAFRSKFLDTDELM 691 (979)
Q Consensus 675 a~~aa~r~~~~s~~ei~ 691 (979)
++........++.+.+.
T Consensus 201 Lq~~~~~~~~i~~~~v~ 217 (319)
T PLN03025 201 LQATHSGFGFVNQENVF 217 (319)
T ss_pred HHHHHhcCCCCCHHHHH
Confidence 66444333334444443
No 64
>PRK13342 recombination factor protein RarA; Reviewed
Probab=99.58 E-value=4.1e-14 Score=163.70 Aligned_cols=174 Identities=22% Similarity=0.340 Sum_probs=123.4
Q ss_pred CCCCCCCCcccCcHHHHHH---HHHHHHhhcChhHHHhcCCCCCceeEecCCCCCChHHHHHHHHHHcCCCEEEeechhh
Q 035561 448 KNPPIPLKDFASVESMREE---INEVVAFLQNPSAFQEMGARAPRGVLIVGERGTGKTSLALAIAAEARVPVVNVEAQEL 524 (979)
Q Consensus 448 ~~~~~~f~DIvGleevke~---L~eiV~~L~~p~~f~~lG~~~P~gVLL~GPPGTGKTtLArAlA~elg~~~i~Is~sdL 524 (979)
+.+|.+|+|++|++++... |...+.. ..+.++||+||||||||++|+++|+..+.+++.++++..
T Consensus 5 ~~RP~~l~d~vGq~~~v~~~~~L~~~i~~------------~~~~~ilL~GppGtGKTtLA~~ia~~~~~~~~~l~a~~~ 72 (413)
T PRK13342 5 RMRPKTLDEVVGQEHLLGPGKPLRRMIEA------------GRLSSMILWGPPGTGKTTLARIIAGATDAPFEALSAVTS 72 (413)
T ss_pred hhCCCCHHHhcCcHHHhCcchHHHHHHHc------------CCCceEEEECCCCCCHHHHHHHHHHHhCCCEEEEecccc
Confidence 3467889999999998666 6555421 223479999999999999999999999999999987542
Q ss_pred hhhhhcccchhhHHHHHHHHHh----cCCeEEEEcCccccccccccccCCCchhhHHHHHHHHhhhcccccCCeEEEEe-
Q 035561 525 EAGLWVGQSASNVRELFQTARD----LAPVIIFVEDFDLFAGVRGQFIHTKQQDHESFINQLLVELDGFEKQDGVVLMA- 599 (979)
Q Consensus 525 ~~~~~vG~~~~~Ir~lF~~A~~----~aP~ILfIDEIDaL~~~r~~~~~~~~~~~~~iln~LL~~LDg~~~~~~ViVIA- 599 (979)
+.+.++.+++.+.. ..+.||||||+|.+.. ...+.|+..++. ..+++|+
T Consensus 73 --------~~~~ir~ii~~~~~~~~~g~~~vL~IDEi~~l~~--------------~~q~~LL~~le~----~~iilI~a 126 (413)
T PRK13342 73 --------GVKDLREVIEEARQRRSAGRRTILFIDEIHRFNK--------------AQQDALLPHVED----GTITLIGA 126 (413)
T ss_pred --------cHHHHHHHHHHHHHhhhcCCceEEEEechhhhCH--------------HHHHHHHHHhhc----CcEEEEEe
Confidence 23456667776642 2568999999998732 223455555542 3344554
Q ss_pred cccc-hhhchhhhhcCCceeeEeccCCCCHHHHHHHHHHHHHhccchh-hhhhhhHHHHHHHcCC
Q 035561 600 TTRN-IKQIDEALQRPGRMDRIFNLQKPTQSEREKILRIAAQETMDEE-LIDLVDWRKVAEKTAL 662 (979)
Q Consensus 600 TTN~-pe~LDpALlRpgRFd~~I~~~~Pd~eeR~~IL~~~l~~~~~~~-l~~dvdL~~LA~~T~G 662 (979)
||.+ ...+++++++ |+ ..+.|++|+.++...+++..+....... ..++..+..+++.+.|
T Consensus 127 tt~n~~~~l~~aL~S--R~-~~~~~~~ls~e~i~~lL~~~l~~~~~~~i~i~~~al~~l~~~s~G 188 (413)
T PRK13342 127 TTENPSFEVNPALLS--RA-QVFELKPLSEEDIEQLLKRALEDKERGLVELDDEALDALARLANG 188 (413)
T ss_pred CCCChhhhccHHHhc--cc-eeeEeCCCCHHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHhCCC
Confidence 4434 4589999999 77 7899999999999999998876531111 2334456778887765
No 65
>PRK10865 protein disaggregation chaperone; Provisional
Probab=99.57 E-value=2.2e-14 Score=179.05 Aligned_cols=166 Identities=20% Similarity=0.320 Sum_probs=124.8
Q ss_pred CCCCCcccCcHHHHHHHHHHHHhhcChhHHHhcCCCCCceeEecCCCCCChHHHHHHHHHHc----------CCCEEEee
Q 035561 451 PIPLKDFASVESMREEINEVVAFLQNPSAFQEMGARAPRGVLIVGERGTGKTSLALAIAAEA----------RVPVVNVE 520 (979)
Q Consensus 451 ~~~f~DIvGleevke~L~eiV~~L~~p~~f~~lG~~~P~gVLL~GPPGTGKTtLArAlA~el----------g~~~i~Is 520 (979)
+-.+++++|.++. ++.++.-|.. +...+++|+||||||||++|+++|..+ +.+++.++
T Consensus 174 ~~~l~~vigr~~e---i~~~i~iL~r---------~~~~n~lL~G~pGvGKT~l~~~la~~i~~~~vp~~l~~~~~~~l~ 241 (857)
T PRK10865 174 QGKLDPVIGRDEE---IRRTIQVLQR---------RTKNNPVLIGEPGVGKTAIVEGLAQRIINGEVPEGLKGRRVLALD 241 (857)
T ss_pred cCCCCcCCCCHHH---HHHHHHHHhc---------CCcCceEEECCCCCCHHHHHHHHHHHhhcCCCchhhCCCEEEEEe
Confidence 4578999999975 4444443322 233569999999999999999999987 78999999
Q ss_pred chhhhhh-hhcccchhhHHHHHHHHHh-cCCeEEEEcCccccccccccccCCCchhhHHHHHHHHhhhcccccCCeEEEE
Q 035561 521 AQELEAG-LWVGQSASNVRELFQTARD-LAPVIIFVEDFDLFAGVRGQFIHTKQQDHESFINQLLVELDGFEKQDGVVLM 598 (979)
Q Consensus 521 ~sdL~~~-~~vG~~~~~Ir~lF~~A~~-~aP~ILfIDEIDaL~~~r~~~~~~~~~~~~~iln~LL~~LDg~~~~~~ViVI 598 (979)
.+.++.+ +|.|+.+.+++.+|+.+.. ..|+||||||+|.|.+.++. .+......+ |...+ ..+.+.+|
T Consensus 242 l~~l~ag~~~~g~~e~~lk~~~~~~~~~~~~~ILfIDEih~l~~~~~~---~~~~d~~~~---lkp~l----~~g~l~~I 311 (857)
T PRK10865 242 MGALVAGAKYRGEFEERLKGVLNDLAKQEGNVILFIDELHTMVGAGKA---DGAMDAGNM---LKPAL----ARGELHCV 311 (857)
T ss_pred hhhhhhccchhhhhHHHHHHHHHHHHHcCCCeEEEEecHHHhccCCCC---ccchhHHHH---hcchh----hcCCCeEE
Confidence 8887643 4789999999999998644 56899999999999865432 111222222 22222 34567888
Q ss_pred ecccchh-----hchhhhhcCCceeeEeccCCCCHHHHHHHHHHHHHh
Q 035561 599 ATTRNIK-----QIDEALQRPGRMDRIFNLQKPTQSEREKILRIAAQE 641 (979)
Q Consensus 599 ATTN~pe-----~LDpALlRpgRFd~~I~~~~Pd~eeR~~IL~~~l~~ 641 (979)
|||+..+ .+|+++.| ||+ .|.++.|+.+++..||+.+...
T Consensus 312 gaTt~~e~r~~~~~d~al~r--Rf~-~i~v~eP~~~~~~~iL~~l~~~ 356 (857)
T PRK10865 312 GATTLDEYRQYIEKDAALER--RFQ-KVFVAEPSVEDTIAILRGLKER 356 (857)
T ss_pred EcCCCHHHHHHhhhcHHHHh--hCC-EEEeCCCCHHHHHHHHHHHhhh
Confidence 8888866 48999999 997 5889999999999999887654
No 66
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=99.57 E-value=4.6e-14 Score=169.62 Aligned_cols=190 Identities=17% Similarity=0.220 Sum_probs=135.9
Q ss_pred CCCCCCCCcccCcHHHHHHHHHHHHhhcChhHHHhcCCCCCceeEecCCCCCChHHHHHHHHHHcCCCEE--Ee------
Q 035561 448 KNPPIPLKDFASVESMREEINEVVAFLQNPSAFQEMGARAPRGVLIVGERGTGKTSLALAIAAEARVPVV--NV------ 519 (979)
Q Consensus 448 ~~~~~~f~DIvGleevke~L~eiV~~L~~p~~f~~lG~~~P~gVLL~GPPGTGKTtLArAlA~elg~~~i--~I------ 519 (979)
++++.+|+||+|++.+++.|+..+. ..+.+..+||+||+|||||++|+++|+.+++.-- ..
T Consensus 9 KYRPqtFdEVIGQe~Vv~~L~~aL~-----------~gRL~HAyLFtGPpGvGKTTlAriLAKaLnCe~~~~~~PCG~C~ 77 (830)
T PRK07003 9 KWRPKDFASLVGQEHVVRALTHALD-----------GGRLHHAYLFTGTRGVGKTTLSRIFAKALNCETGVTSQPCGVCR 77 (830)
T ss_pred HhCCCcHHHHcCcHHHHHHHHHHHh-----------cCCCCeEEEEECCCCCCHHHHHHHHHHHhcCccCCCCCCCcccH
Confidence 5788999999999999999986653 2244567899999999999999999999875210 00
Q ss_pred echhhhhhhh---------cccchhhHHHHHHHHHh----cCCeEEEEcCccccccccccccCCCchhhHHHHHHHHhhh
Q 035561 520 EAQELEAGLW---------VGQSASNVRELFQTARD----LAPVIIFVEDFDLFAGVRGQFIHTKQQDHESFINQLLVEL 586 (979)
Q Consensus 520 s~sdL~~~~~---------vG~~~~~Ir~lF~~A~~----~aP~ILfIDEIDaL~~~r~~~~~~~~~~~~~iln~LL~~L 586 (979)
+|..+..+.+ ...+...+|++.+.+.. ....|+||||+|.|. ....|.||+.|
T Consensus 78 sCr~I~~G~h~DviEIDAas~rgVDdIReLIe~a~~~P~~gr~KVIIIDEah~LT--------------~~A~NALLKtL 143 (830)
T PRK07003 78 ACREIDEGRFVDYVEMDAASNRGVDEMAALLERAVYAPVDARFKVYMIDEVHMLT--------------NHAFNAMLKTL 143 (830)
T ss_pred HHHHHhcCCCceEEEecccccccHHHHHHHHHHHHhccccCCceEEEEeChhhCC--------------HHHHHHHHHHH
Confidence 1111111100 11234457777776643 235799999999882 23567888888
Q ss_pred cccccCCeEEEEecccchhhchhhhhcCCceeeEeccCCCCHHHHHHHHHHHHHhccchhhhhhhhHHHHHHHcCCCCHH
Q 035561 587 DGFEKQDGVVLMATTRNIKQIDEALQRPGRMDRIFNLQKPTQSEREKILRIAAQETMDEELIDLVDWRKVAEKTALLRPI 666 (979)
Q Consensus 587 Dg~~~~~~ViVIATTN~pe~LDpALlRpgRFd~~I~~~~Pd~eeR~~IL~~~l~~~~~~~l~~dvdL~~LA~~T~Gfsga 666 (979)
+.. ...+.+|.+||+++.|.+.|++ |+ ..+.|..++.++..+.|+..++... ...++..+..|++.+.|-...
T Consensus 144 EEP--P~~v~FILaTtd~~KIp~TIrS--RC-q~f~Fk~Ls~eeIv~~L~~Il~~Eg--I~id~eAL~lIA~~A~GsmRd 216 (830)
T PRK07003 144 EEP--PPHVKFILATTDPQKIPVTVLS--RC-LQFNLKQMPAGHIVSHLERILGEER--IAFEPQALRLLARAAQGSMRD 216 (830)
T ss_pred Hhc--CCCeEEEEEECChhhccchhhh--he-EEEecCCcCHHHHHHHHHHHHHHcC--CCCCHHHHHHHHHHcCCCHHH
Confidence 753 3467888888899999999999 55 7899999999999999998887542 234566788899999985443
Q ss_pred HHH
Q 035561 667 ELK 669 (979)
Q Consensus 667 DL~ 669 (979)
-|.
T Consensus 217 ALs 219 (830)
T PRK07003 217 ALS 219 (830)
T ss_pred HHH
Confidence 333
No 67
>PRK12402 replication factor C small subunit 2; Reviewed
Probab=99.57 E-value=8.7e-14 Score=155.14 Aligned_cols=210 Identities=15% Similarity=0.179 Sum_probs=136.6
Q ss_pred cccCCCCCCCCcccCcHHHHHHHHHHHHhhcChhHHHhcCCCCCceeEecCCCCCChHHHHHHHHHHcC-----CCEEEe
Q 035561 445 KRVKNPPIPLKDFASVESMREEINEVVAFLQNPSAFQEMGARAPRGVLIVGERGTGKTSLALAIAAEAR-----VPVVNV 519 (979)
Q Consensus 445 ~~v~~~~~~f~DIvGleevke~L~eiV~~L~~p~~f~~lG~~~P~gVLL~GPPGTGKTtLArAlA~elg-----~~~i~I 519 (979)
+..++.|.+|++++|.+++++.|...+.. +.+.++||+||||||||++|+++|+++. .+++.+
T Consensus 5 w~~ky~P~~~~~~~g~~~~~~~L~~~~~~------------~~~~~lll~Gp~GtGKT~la~~~~~~l~~~~~~~~~~~i 72 (337)
T PRK12402 5 WTEKYRPALLEDILGQDEVVERLSRAVDS------------PNLPHLLVQGPPGSGKTAAVRALARELYGDPWENNFTEF 72 (337)
T ss_pred hHHhhCCCcHHHhcCCHHHHHHHHHHHhC------------CCCceEEEECCCCCCHHHHHHHHHHHhcCcccccceEEe
Confidence 34467888999999999999998865531 1123699999999999999999999884 457888
Q ss_pred echhhhhhh--h----------ccc-------chhhHHHHHHHHHh-----cCCeEEEEcCccccccccccccCCCchhh
Q 035561 520 EAQELEAGL--W----------VGQ-------SASNVRELFQTARD-----LAPVIIFVEDFDLFAGVRGQFIHTKQQDH 575 (979)
Q Consensus 520 s~sdL~~~~--~----------vG~-------~~~~Ir~lF~~A~~-----~aP~ILfIDEIDaL~~~r~~~~~~~~~~~ 575 (979)
+++++.... . .+. ....++.+...... ..+.+|+|||+|.+..
T Consensus 73 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlilDe~~~l~~------------- 139 (337)
T PRK12402 73 NVADFFDQGKKYLVEDPRFAHFLGTDKRIRSSKIDNFKHVLKEYASYRPLSADYKTILLDNAEALRE------------- 139 (337)
T ss_pred chhhhhhcchhhhhcCcchhhhhhhhhhhccchHHHHHHHHHHHHhcCCCCCCCcEEEEeCcccCCH-------------
Confidence 988764110 0 010 11223333333322 2346999999997731
Q ss_pred HHHHHHHHhhhcccccCCeEEEEecccchhhchhhhhcCCceeeEeccCCCCHHHHHHHHHHHHHhccchhhhhhhhHHH
Q 035561 576 ESFINQLLVELDGFEKQDGVVLMATTRNIKQIDEALQRPGRMDRIFNLQKPTQSEREKILRIAAQETMDEELIDLVDWRK 655 (979)
Q Consensus 576 ~~iln~LL~~LDg~~~~~~ViVIATTN~pe~LDpALlRpgRFd~~I~~~~Pd~eeR~~IL~~~l~~~~~~~l~~dvdL~~ 655 (979)
...+.|...++.... . ..+|.+|+.+..+.+.|.+ |+ ..+.+++|+.++...+++..+++... ..++..+..
T Consensus 140 -~~~~~L~~~le~~~~-~-~~~Il~~~~~~~~~~~L~s--r~-~~v~~~~~~~~~~~~~l~~~~~~~~~--~~~~~al~~ 211 (337)
T PRK12402 140 -DAQQALRRIMEQYSR-T-CRFIIATRQPSKLIPPIRS--RC-LPLFFRAPTDDELVDVLESIAEAEGV--DYDDDGLEL 211 (337)
T ss_pred -HHHHHHHHHHHhccC-C-CeEEEEeCChhhCchhhcC--Cc-eEEEecCCCHHHHHHHHHHHHHHcCC--CCCHHHHHH
Confidence 122344455554433 2 3344455566777788888 54 57899999999999999998876532 245567788
Q ss_pred HHHHcCCCCHHHHHHHHHHHhhhhhccCCCChHHHh
Q 035561 656 VAEKTALLRPIELKLVPVALEGSAFRSKFLDTDELM 691 (979)
Q Consensus 656 LA~~T~GfsgaDL~~Lv~aa~~aa~r~~~~s~~ei~ 691 (979)
|++.+.| |+..+.+.++..+.....++.+++.
T Consensus 212 l~~~~~g----dlr~l~~~l~~~~~~~~~It~~~v~ 243 (337)
T PRK12402 212 IAYYAGG----DLRKAILTLQTAALAAGEITMEAAY 243 (337)
T ss_pred HHHHcCC----CHHHHHHHHHHHHHcCCCCCHHHHH
Confidence 8887744 6666666665554444445554443
No 68
>PRK14961 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.56 E-value=9.8e-14 Score=158.05 Aligned_cols=194 Identities=16% Similarity=0.207 Sum_probs=132.7
Q ss_pred CCCCCCCCcccCcHHHHHHHHHHHHhhcChhHHHhcCCCCCceeEecCCCCCChHHHHHHHHHHcCCCEEE--------e
Q 035561 448 KNPPIPLKDFASVESMREEINEVVAFLQNPSAFQEMGARAPRGVLIVGERGTGKTSLALAIAAEARVPVVN--------V 519 (979)
Q Consensus 448 ~~~~~~f~DIvGleevke~L~eiV~~L~~p~~f~~lG~~~P~gVLL~GPPGTGKTtLArAlA~elg~~~i~--------I 519 (979)
+++|.+|+||+|++.+++.|+..+.. .+.|..+||+||||||||++|+++|+++++..-. .
T Consensus 9 kyrP~~~~~iiGq~~~~~~l~~~~~~-----------~~~~h~~L~~Gp~G~GKTtla~~la~~l~c~~~~~~~pc~~c~ 77 (363)
T PRK14961 9 KWRPQYFRDIIGQKHIVTAISNGLSL-----------GRIHHAWLLSGTRGVGKTTIARLLAKSLNCQNGITSNPCRKCI 77 (363)
T ss_pred HhCCCchhhccChHHHHHHHHHHHHc-----------CCCCeEEEEecCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCH
Confidence 56788999999999999998765521 2346678999999999999999999998642100 0
Q ss_pred echhhhhhhh---------cccchhhHHHHHHHHHh----cCCeEEEEcCccccccccccccCCCchhhHHHHHHHHhhh
Q 035561 520 EAQELEAGLW---------VGQSASNVRELFQTARD----LAPVIIFVEDFDLFAGVRGQFIHTKQQDHESFINQLLVEL 586 (979)
Q Consensus 520 s~sdL~~~~~---------vG~~~~~Ir~lF~~A~~----~aP~ILfIDEIDaL~~~r~~~~~~~~~~~~~iln~LL~~L 586 (979)
+|.++..+.+ .......++++.+.+.. ....|++|||+|.+. ....+.||+.+
T Consensus 78 ~c~~~~~~~~~d~~~~~~~~~~~v~~ir~i~~~~~~~p~~~~~kviIIDEa~~l~--------------~~a~naLLk~l 143 (363)
T PRK14961 78 ICKEIEKGLCLDLIEIDAASRTKVEEMREILDNIYYSPSKSRFKVYLIDEVHMLS--------------RHSFNALLKTL 143 (363)
T ss_pred HHHHHhcCCCCceEEecccccCCHHHHHHHHHHHhcCcccCCceEEEEEChhhcC--------------HHHHHHHHHHH
Confidence 1111111100 01233456666665542 124699999999872 23456778777
Q ss_pred cccccCCeEEEEecccchhhchhhhhcCCceeeEeccCCCCHHHHHHHHHHHHHhccchhhhhhhhHHHHHHHcCCCCHH
Q 035561 587 DGFEKQDGVVLMATTRNIKQIDEALQRPGRMDRIFNLQKPTQSEREKILRIAAQETMDEELIDLVDWRKVAEKTALLRPI 666 (979)
Q Consensus 587 Dg~~~~~~ViVIATTN~pe~LDpALlRpgRFd~~I~~~~Pd~eeR~~IL~~~l~~~~~~~l~~dvdL~~LA~~T~Gfsga 666 (979)
+.. ...+.+|.+|+.++.+++++++ |+ ..++|++|+.++..++++..++... ...++..+..++..+.| ++.
T Consensus 144 Ee~--~~~~~fIl~t~~~~~l~~tI~S--Rc-~~~~~~~l~~~el~~~L~~~~~~~g--~~i~~~al~~ia~~s~G-~~R 215 (363)
T PRK14961 144 EEP--PQHIKFILATTDVEKIPKTILS--RC-LQFKLKIISEEKIFNFLKYILIKES--IDTDEYALKLIAYHAHG-SMR 215 (363)
T ss_pred hcC--CCCeEEEEEcCChHhhhHHHHh--hc-eEEeCCCCCHHHHHHHHHHHHHHcC--CCCCHHHHHHHHHHcCC-CHH
Confidence 753 2345566667778889999998 65 6899999999999999999887642 22445567788888877 555
Q ss_pred HHHHHHHH
Q 035561 667 ELKLVPVA 674 (979)
Q Consensus 667 DL~~Lv~a 674 (979)
++.+++..
T Consensus 216 ~al~~l~~ 223 (363)
T PRK14961 216 DALNLLEH 223 (363)
T ss_pred HHHHHHHH
Confidence 55555443
No 69
>PRK05342 clpX ATP-dependent protease ATP-binding subunit ClpX; Provisional
Probab=99.55 E-value=8.1e-14 Score=160.80 Aligned_cols=179 Identities=21% Similarity=0.250 Sum_probs=120.5
Q ss_pred ccCcHHHHHHHHHHHHh-hcChhHHHh--cCC-CCCceeEecCCCCCChHHHHHHHHHHcCCCEEEeechhhhhhhhccc
Q 035561 457 FASVESMREEINEVVAF-LQNPSAFQE--MGA-RAPRGVLIVGERGTGKTSLALAIAAEARVPVVNVEAQELEAGLWVGQ 532 (979)
Q Consensus 457 IvGleevke~L~eiV~~-L~~p~~f~~--lG~-~~P~gVLL~GPPGTGKTtLArAlA~elg~~~i~Is~sdL~~~~~vG~ 532 (979)
|+|++++++.|...+.. ++.-..... -.. ....++||+||||||||++|+++|..++.||+.++++.+....|+|.
T Consensus 73 ViGq~~ak~~l~~av~~~~~r~~~~~~~~~~~~~~~~~iLl~Gp~GtGKT~lAr~lA~~l~~pf~~id~~~l~~~gyvG~ 152 (412)
T PRK05342 73 VIGQERAKKVLSVAVYNHYKRLRHGDKKDDDVELQKSNILLIGPTGSGKTLLAQTLARILDVPFAIADATTLTEAGYVGE 152 (412)
T ss_pred eeChHHHHHHHHHHHHHHHHhhhcccccccccccCCceEEEEcCCCCCHHHHHHHHHHHhCCCceecchhhcccCCcccc
Confidence 89999999999755421 111100000 011 23478999999999999999999999999999999998865567887
Q ss_pred chhh-HHHHHHHH----HhcCCeEEEEcCccccccccccccCCCchhhHHHHHHHHhhhcccc-----------cCCeEE
Q 035561 533 SASN-VRELFQTA----RDLAPVIIFVEDFDLFAGVRGQFIHTKQQDHESFINQLLVELDGFE-----------KQDGVV 596 (979)
Q Consensus 533 ~~~~-Ir~lF~~A----~~~aP~ILfIDEIDaL~~~r~~~~~~~~~~~~~iln~LL~~LDg~~-----------~~~~Vi 596 (979)
.... +..++..+ ....++||||||||.+.++++..+.+.+-....+.+.||..||+-. .....+
T Consensus 153 d~e~~l~~l~~~~~~~~~~a~~gIi~iDEIdkl~~~~~~~~~~~d~s~~~vQ~~LL~~Leg~~~~v~~~gg~~~~~~~~~ 232 (412)
T PRK05342 153 DVENILLKLLQAADYDVEKAQRGIVYIDEIDKIARKSENPSITRDVSGEGVQQALLKILEGTVASVPPQGGRKHPQQEFI 232 (412)
T ss_pred hHHHHHHHHHHhccccHHHcCCcEEEEechhhhccccCCCCcCCCcccHHHHHHHHHHHhcCeEEeCCCCCcCcCCCCeE
Confidence 5444 44444432 2346899999999999876432222222222356778888887521 012345
Q ss_pred EEecccchh----------------------------------------------------hchhhhhcCCceeeEeccC
Q 035561 597 LMATTRNIK----------------------------------------------------QIDEALQRPGRMDRIFNLQ 624 (979)
Q Consensus 597 VIATTN~pe----------------------------------------------------~LDpALlRpgRFd~~I~~~ 624 (979)
+|.|+|-.. -+.|+|+. |+|.++.|.
T Consensus 233 ~i~t~nilfi~~Gaf~g~~~~~~~r~~~~~~gf~~~~~~~~~~~~~~~~~~~~~~~dL~~~gf~PEflg--Rld~iv~f~ 310 (412)
T PRK05342 233 QVDTTNILFICGGAFDGLEKIIKQRLGKKGIGFGAEVKSKKEKRTEGELLKQVEPEDLIKFGLIPEFIG--RLPVVATLE 310 (412)
T ss_pred EeccCCceeeecccccCcHHHHHHHHhhcccCCccccccccccchhHHHHHhcCHHHHHHHhhhHHHhC--CCCeeeecC
Confidence 566655400 03456655 999999999
Q ss_pred CCCHHHHHHHHHH
Q 035561 625 KPTQSEREKILRI 637 (979)
Q Consensus 625 ~Pd~eeR~~IL~~ 637 (979)
+.+.++..+|+..
T Consensus 311 ~L~~~~L~~Il~~ 323 (412)
T PRK05342 311 ELDEEALVRILTE 323 (412)
T ss_pred CCCHHHHHHHHHH
Confidence 9999999999984
No 70
>PRK14960 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.55 E-value=9.6e-14 Score=165.47 Aligned_cols=203 Identities=16% Similarity=0.210 Sum_probs=142.8
Q ss_pred CCCCCCCCcccCcHHHHHHHHHHHHhhcChhHHHhcCCCCCceeEecCCCCCChHHHHHHHHHHcCCC------------
Q 035561 448 KNPPIPLKDFASVESMREEINEVVAFLQNPSAFQEMGARAPRGVLIVGERGTGKTSLALAIAAEARVP------------ 515 (979)
Q Consensus 448 ~~~~~~f~DIvGleevke~L~eiV~~L~~p~~f~~lG~~~P~gVLL~GPPGTGKTtLArAlA~elg~~------------ 515 (979)
+++|.+|+||+|++.+++.|...+. ..+.+..+||+||||||||++|+++|+.+++.
T Consensus 8 KyRPktFddVIGQe~vv~~L~~aI~-----------~grl~HAyLF~GPpGvGKTTlAriLAK~LnC~~~~~~~pCg~C~ 76 (702)
T PRK14960 8 KYRPRNFNELVGQNHVSRALSSALE-----------RGRLHHAYLFTGTRGVGKTTIARILAKCLNCETGVTSTPCEVCA 76 (702)
T ss_pred HhCCCCHHHhcCcHHHHHHHHHHHH-----------cCCCCeEEEEECCCCCCHHHHHHHHHHHhCCCcCCCCCCCccCH
Confidence 5678899999999999999986653 23456789999999999999999999998752
Q ss_pred ------------EEEeechhhhhhhhcccchhhHHHHHHHHHh----cCCeEEEEcCccccccccccccCCCchhhHHHH
Q 035561 516 ------------VVNVEAQELEAGLWVGQSASNVRELFQTARD----LAPVIIFVEDFDLFAGVRGQFIHTKQQDHESFI 579 (979)
Q Consensus 516 ------------~i~Is~sdL~~~~~vG~~~~~Ir~lF~~A~~----~aP~ILfIDEIDaL~~~r~~~~~~~~~~~~~il 579 (979)
++.+++++ ..+...+|++.+.+.. ....|++|||+|.|. ....
T Consensus 77 sC~~I~~g~hpDviEIDAAs-------~~~VddIReli~~~~y~P~~gk~KV~IIDEVh~LS--------------~~A~ 135 (702)
T PRK14960 77 TCKAVNEGRFIDLIEIDAAS-------RTKVEDTRELLDNVPYAPTQGRFKVYLIDEVHMLS--------------THSF 135 (702)
T ss_pred HHHHHhcCCCCceEEecccc-------cCCHHHHHHHHHHHhhhhhcCCcEEEEEechHhcC--------------HHHH
Confidence 23333221 1234567777766532 235799999999872 2356
Q ss_pred HHHHhhhcccccCCeEEEEecccchhhchhhhhcCCceeeEeccCCCCHHHHHHHHHHHHHhccchhhhhhhhHHHHHHH
Q 035561 580 NQLLVELDGFEKQDGVVLMATTRNIKQIDEALQRPGRMDRIFNLQKPTQSEREKILRIAAQETMDEELIDLVDWRKVAEK 659 (979)
Q Consensus 580 n~LL~~LDg~~~~~~ViVIATTN~pe~LDpALlRpgRFd~~I~~~~Pd~eeR~~IL~~~l~~~~~~~l~~dvdL~~LA~~ 659 (979)
+.|++.|+.. ...+.+|.+|+.+..+++.+++ |+ ..+.|.+++.++....++..+++.. ...++..+..||+.
T Consensus 136 NALLKtLEEP--P~~v~FILaTtd~~kIp~TIlS--RC-q~feFkpLs~eEI~k~L~~Il~kEg--I~id~eAL~~IA~~ 208 (702)
T PRK14960 136 NALLKTLEEP--PEHVKFLFATTDPQKLPITVIS--RC-LQFTLRPLAVDEITKHLGAILEKEQ--IAADQDAIWQIAES 208 (702)
T ss_pred HHHHHHHhcC--CCCcEEEEEECChHhhhHHHHH--hh-heeeccCCCHHHHHHHHHHHHHHcC--CCCCHHHHHHHHHH
Confidence 7788888753 3456666677888889999888 55 6889999999999999998887642 23455668889998
Q ss_pred cCCCCHHHHHHHHHHHhhhhhccCCCChHHHhh
Q 035561 660 TALLRPIELKLVPVALEGSAFRSKFLDTDELMS 692 (979)
Q Consensus 660 T~GfsgaDL~~Lv~aa~~aa~r~~~~s~~ei~~ 692 (979)
+.| +..++.+++..+. +.....++.+++..
T Consensus 209 S~G-dLRdALnLLDQaI--ayg~g~IT~edV~~ 238 (702)
T PRK14960 209 AQG-SLRDALSLTDQAI--AYGQGAVHHQDVKE 238 (702)
T ss_pred cCC-CHHHHHHHHHHHH--HhcCCCcCHHHHHH
Confidence 887 5555555543222 22344455555433
No 71
>CHL00095 clpC Clp protease ATP binding subunit
Probab=99.55 E-value=4.9e-14 Score=175.61 Aligned_cols=189 Identities=19% Similarity=0.239 Sum_probs=138.7
Q ss_pred CCCCcccCcHHHHHHHHHHHHhhcChhHHHhcCCCCCceeEecCCCCCChHHHHHHHHHHc----------CCCEEEeec
Q 035561 452 IPLKDFASVESMREEINEVVAFLQNPSAFQEMGARAPRGVLIVGERGTGKTSLALAIAAEA----------RVPVVNVEA 521 (979)
Q Consensus 452 ~~f~DIvGleevke~L~eiV~~L~~p~~f~~lG~~~P~gVLL~GPPGTGKTtLArAlA~el----------g~~~i~Is~ 521 (979)
-.++.++|.++..+.+.+++ +.+.+.+++|+||||||||++|+.+|... +.+++.+++
T Consensus 176 ~~~~~~igr~~ei~~~~~~L------------~r~~~~n~lL~G~pGvGKTal~~~la~~i~~~~vp~~l~~~~i~~l~~ 243 (821)
T CHL00095 176 GNLDPVIGREKEIERVIQIL------------GRRTKNNPILIGEPGVGKTAIAEGLAQRIVNRDVPDILEDKLVITLDI 243 (821)
T ss_pred CCCCCCCCcHHHHHHHHHHH------------cccccCCeEEECCCCCCHHHHHHHHHHHHHhCCCChhhcCCeEEEeeH
Confidence 45889999997777776553 23455689999999999999999999986 478999999
Q ss_pred hhhhh-hhhcccchhhHHHHHHHHHhcCCeEEEEcCccccccccccccCCCchhhHHHHHHHHhhhcccccCCeEEEEec
Q 035561 522 QELEA-GLWVGQSASNVRELFQTARDLAPVIIFVEDFDLFAGVRGQFIHTKQQDHESFINQLLVELDGFEKQDGVVLMAT 600 (979)
Q Consensus 522 sdL~~-~~~vG~~~~~Ir~lF~~A~~~aP~ILfIDEIDaL~~~r~~~~~~~~~~~~~iln~LL~~LDg~~~~~~ViVIAT 600 (979)
+.+++ .+|.|+.+.+++.+|+.+....++||||||+|.|.+.++.. ++.... +.|...+ ....+.+||+
T Consensus 244 ~~l~ag~~~~ge~e~rl~~i~~~~~~~~~~ILfiDEih~l~~~g~~~---g~~~~a---~lLkp~l----~rg~l~~Iga 313 (821)
T CHL00095 244 GLLLAGTKYRGEFEERLKRIFDEIQENNNIILVIDEVHTLIGAGAAE---GAIDAA---NILKPAL----ARGELQCIGA 313 (821)
T ss_pred HHHhccCCCccHHHHHHHHHHHHHHhcCCeEEEEecHHHHhcCCCCC---CcccHH---HHhHHHH----hCCCcEEEEe
Confidence 88764 35889999999999999988889999999999998654321 111222 2222222 2345777777
Q ss_pred ccchh-----hchhhhhcCCceeeEeccCCCCHHHHHHHHHHHHHhcc--chhhhhhhhHHHHHHHcCCCCH
Q 035561 601 TRNIK-----QIDEALQRPGRMDRIFNLQKPTQSEREKILRIAAQETM--DEELIDLVDWRKVAEKTALLRP 665 (979)
Q Consensus 601 TN~pe-----~LDpALlRpgRFd~~I~~~~Pd~eeR~~IL~~~l~~~~--~~~l~~dvdL~~LA~~T~Gfsg 665 (979)
|+..+ ..||++.+ ||. .|.++.|+.++...|++....... .....++..+..++..+.+|.+
T Consensus 314 Tt~~ey~~~ie~D~aL~r--Rf~-~I~v~ep~~~e~~aILr~l~~~~e~~~~v~i~deal~~i~~ls~~yi~ 382 (821)
T CHL00095 314 TTLDEYRKHIEKDPALER--RFQ-PVYVGEPSVEETIEILFGLRSRYEKHHNLSISDKALEAAAKLSDQYIA 382 (821)
T ss_pred CCHHHHHHHHhcCHHHHh--cce-EEecCCCCHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhccCc
Confidence 77754 47899999 996 579999999999999987654210 0111344557777888877765
No 72
>PHA02544 44 clamp loader, small subunit; Provisional
Probab=99.55 E-value=6.7e-14 Score=155.45 Aligned_cols=165 Identities=21% Similarity=0.308 Sum_probs=116.2
Q ss_pred hcccCCCCCCCCcccCcHHHHHHHHHHHHhhcChhHHHhcCCCCCceeEecCCCCCChHHHHHHHHHHcCCCEEEeechh
Q 035561 444 MKRVKNPPIPLKDFASVESMREEINEVVAFLQNPSAFQEMGARAPRGVLIVGERGTGKTSLALAIAAEARVPVVNVEAQE 523 (979)
Q Consensus 444 l~~v~~~~~~f~DIvGleevke~L~eiV~~L~~p~~f~~lG~~~P~gVLL~GPPGTGKTtLArAlA~elg~~~i~Is~sd 523 (979)
++..+++|.+|+|++|++++++.|...+. ....|..+||+||||+|||++|+++|++.+.+++.+++++
T Consensus 10 ~w~~kyrP~~~~~~~~~~~~~~~l~~~~~-----------~~~~~~~lll~G~~G~GKT~la~~l~~~~~~~~~~i~~~~ 78 (316)
T PHA02544 10 MWEQKYRPSTIDECILPAADKETFKSIVK-----------KGRIPNMLLHSPSPGTGKTTVAKALCNEVGAEVLFVNGSD 78 (316)
T ss_pred cceeccCCCcHHHhcCcHHHHHHHHHHHh-----------cCCCCeEEEeeCcCCCCHHHHHHHHHHHhCccceEeccCc
Confidence 34557888999999999999999887663 1234566777999999999999999999999999999876
Q ss_pred hhhhhhcccchhhHHHHHHHHH-hcCCeEEEEcCccccccccccccCCCchhhHHHHHHHHhhhcccccCCeEEEEeccc
Q 035561 524 LEAGLWVGQSASNVRELFQTAR-DLAPVIIFVEDFDLFAGVRGQFIHTKQQDHESFINQLLVELDGFEKQDGVVLMATTR 602 (979)
Q Consensus 524 L~~~~~vG~~~~~Ir~lF~~A~-~~aP~ILfIDEIDaL~~~r~~~~~~~~~~~~~iln~LL~~LDg~~~~~~ViVIATTN 602 (979)
. . .......+........ ...+++|+|||+|.+.. ...... |...++... .++.+|.|||
T Consensus 79 -~-~--~~~i~~~l~~~~~~~~~~~~~~vliiDe~d~l~~----------~~~~~~---L~~~le~~~--~~~~~Ilt~n 139 (316)
T PHA02544 79 -C-R--IDFVRNRLTRFASTVSLTGGGKVIIIDEFDRLGL----------ADAQRH---LRSFMEAYS--KNCSFIITAN 139 (316)
T ss_pred -c-c--HHHHHHHHHHHHHhhcccCCCeEEEEECcccccC----------HHHHHH---HHHHHHhcC--CCceEEEEcC
Confidence 1 1 1111111222111111 12578999999997721 112222 333344432 3457778899
Q ss_pred chhhchhhhhcCCceeeEeccCCCCHHHHHHHHHHHHHh
Q 035561 603 NIKQIDEALQRPGRMDRIFNLQKPTQSEREKILRIAAQE 641 (979)
Q Consensus 603 ~pe~LDpALlRpgRFd~~I~~~~Pd~eeR~~IL~~~l~~ 641 (979)
.++.+++++++ || ..+.++.|+.+++.++++..+..
T Consensus 140 ~~~~l~~~l~s--R~-~~i~~~~p~~~~~~~il~~~~~~ 175 (316)
T PHA02544 140 NKNGIIEPLRS--RC-RVIDFGVPTKEEQIEMMKQMIVR 175 (316)
T ss_pred ChhhchHHHHh--hc-eEEEeCCCCHHHHHHHHHHHHHH
Confidence 99999999999 77 47899999999999888875543
No 73
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.54 E-value=8.9e-14 Score=164.54 Aligned_cols=202 Identities=13% Similarity=0.128 Sum_probs=142.4
Q ss_pred CCCCCCCCcccCcHHHHHHHHHHHHhhcChhHHHhcCCCCCceeEecCCCCCChHHHHHHHHHHcCCC------------
Q 035561 448 KNPPIPLKDFASVESMREEINEVVAFLQNPSAFQEMGARAPRGVLIVGERGTGKTSLALAIAAEARVP------------ 515 (979)
Q Consensus 448 ~~~~~~f~DIvGleevke~L~eiV~~L~~p~~f~~lG~~~P~gVLL~GPPGTGKTtLArAlA~elg~~------------ 515 (979)
+++|.+|+||+|++.+++.|...+.. .+.|..+||+||||||||++|+++|+.+++.
T Consensus 9 kyRP~~f~divGq~~v~~~L~~~~~~-----------~~l~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pCg~C~ 77 (509)
T PRK14958 9 KWRPRCFQEVIGQAPVVRALSNALDQ-----------QYLHHAYLFTGTRGVGKTTISRILAKCLNCEKGVSANPCNDCE 77 (509)
T ss_pred HHCCCCHHHhcCCHHHHHHHHHHHHh-----------CCCCeeEEEECCCCCCHHHHHHHHHHHhcCCCCCCcccCCCCH
Confidence 57788999999999999999866632 2345678999999999999999999998653
Q ss_pred ------------EEEeechhhhhhhhcccchhhHHHHHHHHHh----cCCeEEEEcCccccccccccccCCCchhhHHHH
Q 035561 516 ------------VVNVEAQELEAGLWVGQSASNVRELFQTARD----LAPVIIFVEDFDLFAGVRGQFIHTKQQDHESFI 579 (979)
Q Consensus 516 ------------~i~Is~sdL~~~~~vG~~~~~Ir~lF~~A~~----~aP~ILfIDEIDaL~~~r~~~~~~~~~~~~~il 579 (979)
++++++++ ..+...+|++.+.+.. ....|++|||+|.+. ....
T Consensus 78 ~C~~i~~g~~~d~~eidaas-------~~~v~~iR~l~~~~~~~p~~~~~kV~iIDE~~~ls--------------~~a~ 136 (509)
T PRK14958 78 NCREIDEGRFPDLFEVDAAS-------RTKVEDTRELLDNIPYAPTKGRFKVYLIDEVHMLS--------------GHSF 136 (509)
T ss_pred HHHHHhcCCCceEEEEcccc-------cCCHHHHHHHHHHHhhccccCCcEEEEEEChHhcC--------------HHHH
Confidence 33333221 2234457777766543 234699999999883 2346
Q ss_pred HHHHhhhcccccCCeEEEEecccchhhchhhhhcCCceeeEeccCCCCHHHHHHHHHHHHHhccchhhhhhhhHHHHHHH
Q 035561 580 NQLLVELDGFEKQDGVVLMATTRNIKQIDEALQRPGRMDRIFNLQKPTQSEREKILRIAAQETMDEELIDLVDWRKVAEK 659 (979)
Q Consensus 580 n~LL~~LDg~~~~~~ViVIATTN~pe~LDpALlRpgRFd~~I~~~~Pd~eeR~~IL~~~l~~~~~~~l~~dvdL~~LA~~ 659 (979)
|.||+.|+.. .+.+.+|.+|+.+..+++.+++ |+ ..++|.+++.++....++..++... ...++..+..+++.
T Consensus 137 naLLk~LEep--p~~~~fIlattd~~kl~~tI~S--Rc-~~~~f~~l~~~~i~~~l~~il~~eg--i~~~~~al~~ia~~ 209 (509)
T PRK14958 137 NALLKTLEEP--PSHVKFILATTDHHKLPVTVLS--RC-LQFHLAQLPPLQIAAHCQHLLKEEN--VEFENAALDLLARA 209 (509)
T ss_pred HHHHHHHhcc--CCCeEEEEEECChHhchHHHHH--Hh-hhhhcCCCCHHHHHHHHHHHHHHcC--CCCCHHHHHHHHHH
Confidence 7888888764 3346666667788899989998 55 6789999999999988888887652 22345567888888
Q ss_pred cCCCCHHHHHHHHHHHhhhhhccCCCChHHHh
Q 035561 660 TALLRPIELKLVPVALEGSAFRSKFLDTDELM 691 (979)
Q Consensus 660 T~GfsgaDL~~Lv~aa~~aa~r~~~~s~~ei~ 691 (979)
+.| +..++.+++..+.. .....++.+++.
T Consensus 210 s~G-slR~al~lLdq~ia--~~~~~It~~~V~ 238 (509)
T PRK14958 210 ANG-SVRDALSLLDQSIA--YGNGKVLIADVK 238 (509)
T ss_pred cCC-cHHHHHHHHHHHHh--cCCCCcCHHHHH
Confidence 877 56666666543322 233445555443
No 74
>PRK14949 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.53 E-value=2.1e-13 Score=166.60 Aligned_cols=192 Identities=18% Similarity=0.204 Sum_probs=133.8
Q ss_pred CCCCCCCCcccCcHHHHHHHHHHHHhhcChhHHHhcCCCCCceeEecCCCCCChHHHHHHHHHHcCCCE-------EEe-
Q 035561 448 KNPPIPLKDFASVESMREEINEVVAFLQNPSAFQEMGARAPRGVLIVGERGTGKTSLALAIAAEARVPV-------VNV- 519 (979)
Q Consensus 448 ~~~~~~f~DIvGleevke~L~eiV~~L~~p~~f~~lG~~~P~gVLL~GPPGTGKTtLArAlA~elg~~~-------i~I- 519 (979)
+++|.+|+||+|++.+++.|+..+.. .+.|..+||+||||||||++|+++|+.+++.- ..+
T Consensus 9 KyRP~tFddIIGQe~Iv~~LknaI~~-----------~rl~HAyLFtGPpGtGKTTLARiLAk~Lnce~~~~~~pCg~C~ 77 (944)
T PRK14949 9 KWRPATFEQMVGQSHVLHALTNALTQ-----------QRLHHAYLFTGTRGVGKTSLARLFAKGLNCEQGVTATPCGVCS 77 (944)
T ss_pred HhCCCCHHHhcCcHHHHHHHHHHHHh-----------CCCCeEEEEECCCCCCHHHHHHHHHHhccCccCCCCCCCCCch
Confidence 56788999999999999998866531 24456689999999999999999999997641 111
Q ss_pred echhhhhhhh------c---ccchhhHHHHHHHHHh----cCCeEEEEcCccccccccccccCCCchhhHHHHHHHHhhh
Q 035561 520 EAQELEAGLW------V---GQSASNVRELFQTARD----LAPVIIFVEDFDLFAGVRGQFIHTKQQDHESFINQLLVEL 586 (979)
Q Consensus 520 s~sdL~~~~~------v---G~~~~~Ir~lF~~A~~----~aP~ILfIDEIDaL~~~r~~~~~~~~~~~~~iln~LL~~L 586 (979)
+|-.+..+.+ . ..+...+|.+.+.+.. ....|+||||+|.| .....|.||+.|
T Consensus 78 sC~~i~~g~~~DviEidAas~~kVDdIReLie~v~~~P~~gk~KViIIDEAh~L--------------T~eAqNALLKtL 143 (944)
T PRK14949 78 SCVEIAQGRFVDLIEVDAASRTKVDDTRELLDNVQYRPSRGRFKVYLIDEVHML--------------SRSSFNALLKTL 143 (944)
T ss_pred HHHHHhcCCCceEEEeccccccCHHHHHHHHHHHHhhhhcCCcEEEEEechHhc--------------CHHHHHHHHHHH
Confidence 1111111100 0 1223456766665542 23479999999988 345678888888
Q ss_pred cccccCCeEEEEecccchhhchhhhhcCCceeeEeccCCCCHHHHHHHHHHHHHhccchhhhhhhhHHHHHHHcCCCCHH
Q 035561 587 DGFEKQDGVVLMATTRNIKQIDEALQRPGRMDRIFNLQKPTQSEREKILRIAAQETMDEELIDLVDWRKVAEKTALLRPI 666 (979)
Q Consensus 587 Dg~~~~~~ViVIATTN~pe~LDpALlRpgRFd~~I~~~~Pd~eeR~~IL~~~l~~~~~~~l~~dvdL~~LA~~T~Gfsga 666 (979)
+.. ...+.+|.+|+.+..|.+.|++ |+ ..+.|.+++.++....|+..+.... ...++..+..|++.+.| +.+
T Consensus 144 EEP--P~~vrFILaTTe~~kLl~TIlS--RC-q~f~fkpLs~eEI~~~L~~il~~Eg--I~~edeAL~lIA~~S~G-d~R 215 (944)
T PRK14949 144 EEP--PEHVKFLLATTDPQKLPVTVLS--RC-LQFNLKSLTQDEIGTQLNHILTQEQ--LPFEAEALTLLAKAANG-SMR 215 (944)
T ss_pred hcc--CCCeEEEEECCCchhchHHHHH--hh-eEEeCCCCCHHHHHHHHHHHHHHcC--CCCCHHHHHHHHHHcCC-CHH
Confidence 853 3345555567778889999998 54 7899999999999999998887532 23345567888988888 445
Q ss_pred HHHHHH
Q 035561 667 ELKLVP 672 (979)
Q Consensus 667 DL~~Lv 672 (979)
+..+++
T Consensus 216 ~ALnLL 221 (944)
T PRK14949 216 DALSLT 221 (944)
T ss_pred HHHHHH
Confidence 555554
No 75
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=99.53 E-value=2.5e-13 Score=160.11 Aligned_cols=194 Identities=18% Similarity=0.259 Sum_probs=137.9
Q ss_pred CCCCCCCCcccCcHHHHHHHHHHHHhhcChhHHHhcCCCCCceeEecCCCCCChHHHHHHHHHHcCCCEE----------
Q 035561 448 KNPPIPLKDFASVESMREEINEVVAFLQNPSAFQEMGARAPRGVLIVGERGTGKTSLALAIAAEARVPVV---------- 517 (979)
Q Consensus 448 ~~~~~~f~DIvGleevke~L~eiV~~L~~p~~f~~lG~~~P~gVLL~GPPGTGKTtLArAlA~elg~~~i---------- 517 (979)
+++|.+|+|++|++.+.+.|+..+. ..+.|.++||+||||||||++|+++|+.+++.--
T Consensus 14 kyRP~~f~dliGq~~vv~~L~~ai~-----------~~ri~~a~Lf~Gp~G~GKTT~ArilAk~Lnc~~~~~~~~~~~~C 82 (507)
T PRK06645 14 KYRPSNFAELQGQEVLVKVLSYTIL-----------NDRLAGGYLLTGIRGVGKTTSARIIAKAVNCSALITENTTIKTC 82 (507)
T ss_pred hhCCCCHHHhcCcHHHHHHHHHHHH-----------cCCCCceEEEECCCCCCHHHHHHHHHHHhcCccccccCcCcCCC
Confidence 5788999999999999998875442 2345678999999999999999999999865211
Q ss_pred --Eeechhhhhhh---------hcccchhhHHHHHHHHHhc----CCeEEEEcCccccccccccccCCCchhhHHHHHHH
Q 035561 518 --NVEAQELEAGL---------WVGQSASNVRELFQTARDL----APVIIFVEDFDLFAGVRGQFIHTKQQDHESFINQL 582 (979)
Q Consensus 518 --~Is~sdL~~~~---------~vG~~~~~Ir~lF~~A~~~----aP~ILfIDEIDaL~~~r~~~~~~~~~~~~~iln~L 582 (979)
..+|..+.... -...+...++++++.+... ...|++|||+|.+. ....+.|
T Consensus 83 ~~C~~C~~i~~~~h~Dv~eidaas~~~vd~Ir~iie~a~~~P~~~~~KVvIIDEa~~Ls--------------~~a~naL 148 (507)
T PRK06645 83 EQCTNCISFNNHNHPDIIEIDAASKTSVDDIRRIIESAEYKPLQGKHKIFIIDEVHMLS--------------KGAFNAL 148 (507)
T ss_pred CCChHHHHHhcCCCCcEEEeeccCCCCHHHHHHHHHHHHhccccCCcEEEEEEChhhcC--------------HHHHHHH
Confidence 01111111000 0123456788888887542 34799999999872 2446777
Q ss_pred HhhhcccccCCeEEEEecccchhhchhhhhcCCceeeEeccCCCCHHHHHHHHHHHHHhccchhhhhhhhHHHHHHHcCC
Q 035561 583 LVELDGFEKQDGVVLMATTRNIKQIDEALQRPGRMDRIFNLQKPTQSEREKILRIAAQETMDEELIDLVDWRKVAEKTAL 662 (979)
Q Consensus 583 L~~LDg~~~~~~ViVIATTN~pe~LDpALlRpgRFd~~I~~~~Pd~eeR~~IL~~~l~~~~~~~l~~dvdL~~LA~~T~G 662 (979)
+..|+. ....+++|.+|+.++.+++++++ |+ ..+.|..++.++...+++..++... ...++..+..|++.+.|
T Consensus 149 Lk~LEe--pp~~~vfI~aTte~~kI~~tI~S--Rc-~~~ef~~ls~~el~~~L~~i~~~eg--i~ie~eAL~~Ia~~s~G 221 (507)
T PRK06645 149 LKTLEE--PPPHIIFIFATTEVQKIPATIIS--RC-QRYDLRRLSFEEIFKLLEYITKQEN--LKTDIEALRIIAYKSEG 221 (507)
T ss_pred HHHHhh--cCCCEEEEEEeCChHHhhHHHHh--cc-eEEEccCCCHHHHHHHHHHHHHHcC--CCCCHHHHHHHHHHcCC
Confidence 877774 33456666667788899999998 55 5788999999999999999998653 22345567889998888
Q ss_pred CCHHHHHHHHHH
Q 035561 663 LRPIELKLVPVA 674 (979)
Q Consensus 663 fsgaDL~~Lv~a 674 (979)
+..++.++...
T Consensus 222 -slR~al~~Ldk 232 (507)
T PRK06645 222 -SARDAVSILDQ 232 (507)
T ss_pred -CHHHHHHHHHH
Confidence 55565555433
No 76
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=99.52 E-value=1.1e-13 Score=172.91 Aligned_cols=191 Identities=17% Similarity=0.217 Sum_probs=136.4
Q ss_pred CCCCCCcccCcHHHHHHHHHHHHhhcChhHHHhcCCCCCceeEecCCCCCChHHHHHHHHHHc----------CCCEEEe
Q 035561 450 PPIPLKDFASVESMREEINEVVAFLQNPSAFQEMGARAPRGVLIVGERGTGKTSLALAIAAEA----------RVPVVNV 519 (979)
Q Consensus 450 ~~~~f~DIvGleevke~L~eiV~~L~~p~~f~~lG~~~P~gVLL~GPPGTGKTtLArAlA~el----------g~~~i~I 519 (979)
++-.++.++|.++.... ++..|. .+...+++|+||||||||++|+++|..+ +.+++.+
T Consensus 168 ~~~~~~~~igr~~ei~~---~~~~l~---------r~~~~n~lL~G~pGvGKT~l~~~la~~i~~~~~p~~l~~~~~~~l 235 (852)
T TIGR03346 168 REGKLDPVIGRDEEIRR---TIQVLS---------RRTKNNPVLIGEPGVGKTAIVEGLAQRIVNGDVPESLKNKRLLAL 235 (852)
T ss_pred hCCCCCcCCCcHHHHHH---HHHHHh---------cCCCCceEEEcCCCCCHHHHHHHHHHHHhccCCchhhcCCeEEEe
Confidence 34578999999975444 443332 2334568999999999999999999985 6789999
Q ss_pred echhhhhh-hhcccchhhHHHHHHHHHhc-CCeEEEEcCccccccccccccCCCchhhHHHHHHHHhhhcccccCCeEEE
Q 035561 520 EAQELEAG-LWVGQSASNVRELFQTARDL-APVIIFVEDFDLFAGVRGQFIHTKQQDHESFINQLLVELDGFEKQDGVVL 597 (979)
Q Consensus 520 s~sdL~~~-~~vG~~~~~Ir~lF~~A~~~-aP~ILfIDEIDaL~~~r~~~~~~~~~~~~~iln~LL~~LDg~~~~~~ViV 597 (979)
+.+.+..+ +|.|+.+.+++.+|+.+... .|+||||||+|.|.+.++. .++. ...+.|.-.+ ....+.+
T Consensus 236 ~~~~l~a~~~~~g~~e~~l~~~l~~~~~~~~~~ILfIDEih~l~~~g~~---~~~~---d~~~~Lk~~l----~~g~i~~ 305 (852)
T TIGR03346 236 DMGALIAGAKYRGEFEERLKAVLNEVTKSEGQIILFIDELHTLVGAGKA---EGAM---DAGNMLKPAL----ARGELHC 305 (852)
T ss_pred eHHHHhhcchhhhhHHHHHHHHHHHHHhcCCCeEEEeccHHHhhcCCCC---cchh---HHHHHhchhh----hcCceEE
Confidence 98887533 68899999999999998654 5899999999999764322 1111 1223332222 3456788
Q ss_pred Eecccchh-----hchhhhhcCCceeeEeccCCCCHHHHHHHHHHHHHhccc--hhhhhhhhHHHHHHHcCCCCH
Q 035561 598 MATTRNIK-----QIDEALQRPGRMDRIFNLQKPTQSEREKILRIAAQETMD--EELIDLVDWRKVAEKTALLRP 665 (979)
Q Consensus 598 IATTN~pe-----~LDpALlRpgRFd~~I~~~~Pd~eeR~~IL~~~l~~~~~--~~l~~dvdL~~LA~~T~Gfsg 665 (979)
||+|+..+ .+|+++.| ||. .|.++.|+.+++..||+........ .....+..+...+..+++|.+
T Consensus 306 IgaTt~~e~r~~~~~d~al~r--Rf~-~i~v~~p~~~~~~~iL~~~~~~~e~~~~v~~~d~~i~~~~~ls~~yi~ 377 (852)
T TIGR03346 306 IGATTLDEYRKYIEKDAALER--RFQ-PVFVDEPTVEDTISILRGLKERYEVHHGVRITDPAIVAAATLSHRYIT 377 (852)
T ss_pred EEeCcHHHHHHHhhcCHHHHh--cCC-EEEeCCCCHHHHHHHHHHHHHHhccccCCCCCHHHHHHHHHhcccccc
Confidence 88888754 47999999 996 5899999999999999987654311 112345566677777776654
No 77
>PRK14964 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.52 E-value=4.6e-13 Score=157.06 Aligned_cols=203 Identities=18% Similarity=0.242 Sum_probs=144.2
Q ss_pred CCCCCCCCcccCcHHHHHHHHHHHHhhcChhHHHhcCCCCCceeEecCCCCCChHHHHHHHHHHcCC-------------
Q 035561 448 KNPPIPLKDFASVESMREEINEVVAFLQNPSAFQEMGARAPRGVLIVGERGTGKTSLALAIAAEARV------------- 514 (979)
Q Consensus 448 ~~~~~~f~DIvGleevke~L~eiV~~L~~p~~f~~lG~~~P~gVLL~GPPGTGKTtLArAlA~elg~------------- 514 (979)
+++|.+|+|++|++.+++.|+..+. ..+.|.++||+|||||||||+|+.+|+.+++
T Consensus 6 KyRP~~f~dliGQe~vv~~L~~a~~-----------~~ri~ha~Lf~Gp~G~GKTT~ArilAk~LnC~~~~~~~pCg~C~ 74 (491)
T PRK14964 6 KYRPSSFKDLVGQDVLVRILRNAFT-----------LNKIPQSILLVGASGVGKTTCARIISLCLNCSNGPTSDPCGTCH 74 (491)
T ss_pred HhCCCCHHHhcCcHHHHHHHHHHHH-----------cCCCCceEEEECCCCccHHHHHHHHHHHHcCcCCCCCCCccccH
Confidence 5778999999999999998875442 2345778999999999999999999997643
Q ss_pred -----------CEEEeechhhhhhhhcccchhhHHHHHHHHHhc----CCeEEEEcCccccccccccccCCCchhhHHHH
Q 035561 515 -----------PVVNVEAQELEAGLWVGQSASNVRELFQTARDL----APVIIFVEDFDLFAGVRGQFIHTKQQDHESFI 579 (979)
Q Consensus 515 -----------~~i~Is~sdL~~~~~vG~~~~~Ir~lF~~A~~~----aP~ILfIDEIDaL~~~r~~~~~~~~~~~~~il 579 (979)
.++++++++ ..+...+|++.+.+... ...|++|||+|.|. ....
T Consensus 75 ~C~~i~~~~~~Dv~eidaas-------~~~vddIR~Iie~~~~~P~~~~~KVvIIDEah~Ls--------------~~A~ 133 (491)
T PRK14964 75 NCISIKNSNHPDVIEIDAAS-------NTSVDDIKVILENSCYLPISSKFKVYIIDEVHMLS--------------NSAF 133 (491)
T ss_pred HHHHHhccCCCCEEEEeccc-------CCCHHHHHHHHHHHHhccccCCceEEEEeChHhCC--------------HHHH
Confidence 234444322 12345688887777532 34799999999772 2456
Q ss_pred HHHHhhhcccccCCeEEEEecccchhhchhhhhcCCceeeEeccCCCCHHHHHHHHHHHHHhccchhhhhhhhHHHHHHH
Q 035561 580 NQLLVELDGFEKQDGVVLMATTRNIKQIDEALQRPGRMDRIFNLQKPTQSEREKILRIAAQETMDEELIDLVDWRKVAEK 659 (979)
Q Consensus 580 n~LL~~LDg~~~~~~ViVIATTN~pe~LDpALlRpgRFd~~I~~~~Pd~eeR~~IL~~~l~~~~~~~l~~dvdL~~LA~~ 659 (979)
|.|++.|+.. .+.+.+|.+|+.++.+++.+++ |+ ..+.|.+++.++....++..++... ...++..+..|++.
T Consensus 134 NaLLK~LEeP--p~~v~fIlatte~~Kl~~tI~S--Rc-~~~~f~~l~~~el~~~L~~ia~~Eg--i~i~~eAL~lIa~~ 206 (491)
T PRK14964 134 NALLKTLEEP--APHVKFILATTEVKKIPVTIIS--RC-QRFDLQKIPTDKLVEHLVDIAKKEN--IEHDEESLKLIAEN 206 (491)
T ss_pred HHHHHHHhCC--CCCeEEEEEeCChHHHHHHHHH--hh-eeeecccccHHHHHHHHHHHHHHcC--CCCCHHHHHHHHHH
Confidence 7888888763 3456666667788889999998 55 6789999999999999998887642 23455668889999
Q ss_pred cCCCCHHHHHHHHHHHhhhhhccCCCChHHHhh
Q 035561 660 TALLRPIELKLVPVALEGSAFRSKFLDTDELMS 692 (979)
Q Consensus 660 T~GfsgaDL~~Lv~aa~~aa~r~~~~s~~ei~~ 692 (979)
+.| +..++.+++..+... ....++.+++..
T Consensus 207 s~G-slR~alslLdqli~y--~~~~It~e~V~~ 236 (491)
T PRK14964 207 SSG-SMRNALFLLEQAAIY--SNNKISEKSVRD 236 (491)
T ss_pred cCC-CHHHHHHHHHHHHHh--cCCCCCHHHHHH
Confidence 877 555655554333222 223456555543
No 78
>PRK07994 DNA polymerase III subunits gamma and tau; Validated
Probab=99.51 E-value=3.6e-13 Score=162.15 Aligned_cols=192 Identities=16% Similarity=0.204 Sum_probs=133.9
Q ss_pred CCCCCCCCcccCcHHHHHHHHHHHHhhcChhHHHhcCCCCCceeEecCCCCCChHHHHHHHHHHcCCCEE--Eee-----
Q 035561 448 KNPPIPLKDFASVESMREEINEVVAFLQNPSAFQEMGARAPRGVLIVGERGTGKTSLALAIAAEARVPVV--NVE----- 520 (979)
Q Consensus 448 ~~~~~~f~DIvGleevke~L~eiV~~L~~p~~f~~lG~~~P~gVLL~GPPGTGKTtLArAlA~elg~~~i--~Is----- 520 (979)
+.++.+|+||+|++.+++.|...+.. .+.+..+||+||+|||||++|+++|+.+++..- ...
T Consensus 9 KyRP~~f~divGQe~vv~~L~~~l~~-----------~rl~hAyLf~Gp~GvGKTTlAr~lAk~L~c~~~~~~~pCg~C~ 77 (647)
T PRK07994 9 KWRPQTFAEVVGQEHVLTALANALDL-----------GRLHHAYLFSGTRGVGKTTIARLLAKGLNCETGITATPCGECD 77 (647)
T ss_pred HhCCCCHHHhcCcHHHHHHHHHHHHc-----------CCCCeEEEEECCCCCCHHHHHHHHHHhhhhccCCCCCCCCCCH
Confidence 46778999999999999988865532 234566899999999999999999999876310 001
Q ss_pred -chhhhhhhh------c---ccchhhHHHHHHHHHh----cCCeEEEEcCccccccccccccCCCchhhHHHHHHHHhhh
Q 035561 521 -AQELEAGLW------V---GQSASNVRELFQTARD----LAPVIIFVEDFDLFAGVRGQFIHTKQQDHESFINQLLVEL 586 (979)
Q Consensus 521 -~sdL~~~~~------v---G~~~~~Ir~lF~~A~~----~aP~ILfIDEIDaL~~~r~~~~~~~~~~~~~iln~LL~~L 586 (979)
|..+..+.+ . ..+...+|++.+.+.. ....|++|||+|.| .....|.||+.|
T Consensus 78 ~C~~i~~g~~~D~ieidaas~~~VddiR~li~~~~~~p~~g~~KV~IIDEah~L--------------s~~a~NALLKtL 143 (647)
T PRK07994 78 NCREIEQGRFVDLIEIDAASRTKVEDTRELLDNVQYAPARGRFKVYLIDEVHML--------------SRHSFNALLKTL 143 (647)
T ss_pred HHHHHHcCCCCCceeecccccCCHHHHHHHHHHHHhhhhcCCCEEEEEechHhC--------------CHHHHHHHHHHH
Confidence 111110000 0 1233456776666542 23469999999988 234678888888
Q ss_pred cccccCCeEEEEecccchhhchhhhhcCCceeeEeccCCCCHHHHHHHHHHHHHhccchhhhhhhhHHHHHHHcCCCCHH
Q 035561 587 DGFEKQDGVVLMATTRNIKQIDEALQRPGRMDRIFNLQKPTQSEREKILRIAAQETMDEELIDLVDWRKVAEKTALLRPI 666 (979)
Q Consensus 587 Dg~~~~~~ViVIATTN~pe~LDpALlRpgRFd~~I~~~~Pd~eeR~~IL~~~l~~~~~~~l~~dvdL~~LA~~T~Gfsga 666 (979)
+.. .+.+.+|.+|+.++.|.+.+++ |+ ..+.|..++.++....|+..+.... ...++..+..|++.+.|- .+
T Consensus 144 EEP--p~~v~FIL~Tt~~~kLl~TI~S--RC-~~~~f~~Ls~~ei~~~L~~il~~e~--i~~e~~aL~~Ia~~s~Gs-~R 215 (647)
T PRK07994 144 EEP--PEHVKFLLATTDPQKLPVTILS--RC-LQFHLKALDVEQIRQQLEHILQAEQ--IPFEPRALQLLARAADGS-MR 215 (647)
T ss_pred HcC--CCCeEEEEecCCccccchHHHh--hh-eEeeCCCCCHHHHHHHHHHHHHHcC--CCCCHHHHHHHHHHcCCC-HH
Confidence 853 3456666667788899999999 64 8999999999999999998886542 223455678889888884 44
Q ss_pred HHHHHH
Q 035561 667 ELKLVP 672 (979)
Q Consensus 667 DL~~Lv 672 (979)
+..+++
T Consensus 216 ~Al~ll 221 (647)
T PRK07994 216 DALSLT 221 (647)
T ss_pred HHHHHH
Confidence 444444
No 79
>PRK14963 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.51 E-value=3.6e-13 Score=159.20 Aligned_cols=176 Identities=20% Similarity=0.278 Sum_probs=128.5
Q ss_pred CCCCCCCCcccCcHHHHHHHHHHHHhhcChhHHHhcCCCCCceeEecCCCCCChHHHHHHHHHHcCCC------------
Q 035561 448 KNPPIPLKDFASVESMREEINEVVAFLQNPSAFQEMGARAPRGVLIVGERGTGKTSLALAIAAEARVP------------ 515 (979)
Q Consensus 448 ~~~~~~f~DIvGleevke~L~eiV~~L~~p~~f~~lG~~~P~gVLL~GPPGTGKTtLArAlA~elg~~------------ 515 (979)
+++|.+|+||+|++.+++.|+..+.. .+.|..+||||||||||||+|+++|+.+.+.
T Consensus 7 KyRP~~~~dvvGq~~v~~~L~~~i~~-----------~~l~ha~Lf~GppGtGKTTlA~~lA~~l~c~~~~~~~cg~C~s 75 (504)
T PRK14963 7 RARPITFDEVVGQEHVKEVLLAALRQ-----------GRLGHAYLFSGPRGVGKTTTARLIAMAVNCSGEDPKPCGECES 75 (504)
T ss_pred hhCCCCHHHhcChHHHHHHHHHHHHc-----------CCCCeEEEEECCCCCCHHHHHHHHHHHHhccCCCCCCCCcChh
Confidence 57789999999999999999876642 2345567999999999999999999988531
Q ss_pred -----------EEEeechhhhhhhhcccchhhHHHHHHHHHh----cCCeEEEEcCccccccccccccCCCchhhHHHHH
Q 035561 516 -----------VVNVEAQELEAGLWVGQSASNVRELFQTARD----LAPVIIFVEDFDLFAGVRGQFIHTKQQDHESFIN 580 (979)
Q Consensus 516 -----------~i~Is~sdL~~~~~vG~~~~~Ir~lF~~A~~----~aP~ILfIDEIDaL~~~r~~~~~~~~~~~~~iln 580 (979)
++.+++++ ..+...+|++.+.+.. ..+.|++|||+|.+. ...++
T Consensus 76 c~~i~~~~h~dv~el~~~~-------~~~vd~iR~l~~~~~~~p~~~~~kVVIIDEad~ls--------------~~a~n 134 (504)
T PRK14963 76 CLAVRRGAHPDVLEIDAAS-------NNSVEDVRDLREKVLLAPLRGGRKVYILDEAHMMS--------------KSAFN 134 (504)
T ss_pred hHHHhcCCCCceEEecccc-------cCCHHHHHHHHHHHhhccccCCCeEEEEECccccC--------------HHHHH
Confidence 33333321 1233456666555443 246799999998662 34567
Q ss_pred HHHhhhcccccCCeEEEEecccchhhchhhhhcCCceeeEeccCCCCHHHHHHHHHHHHHhccchhhhhhhhHHHHHHHc
Q 035561 581 QLLVELDGFEKQDGVVLMATTRNIKQIDEALQRPGRMDRIFNLQKPTQSEREKILRIAAQETMDEELIDLVDWRKVAEKT 660 (979)
Q Consensus 581 ~LL~~LDg~~~~~~ViVIATTN~pe~LDpALlRpgRFd~~I~~~~Pd~eeR~~IL~~~l~~~~~~~l~~dvdL~~LA~~T 660 (979)
.|+..|+.. ...+++|.+||.+..+++.+++ |+ ..+.|.+|+.++....++..+++... ..++..+..|++.+
T Consensus 135 aLLk~LEep--~~~t~~Il~t~~~~kl~~~I~S--Rc-~~~~f~~ls~~el~~~L~~i~~~egi--~i~~~Al~~ia~~s 207 (504)
T PRK14963 135 ALLKTLEEP--PEHVIFILATTEPEKMPPTILS--RT-QHFRFRRLTEEEIAGKLRRLLEAEGR--EAEPEALQLVARLA 207 (504)
T ss_pred HHHHHHHhC--CCCEEEEEEcCChhhCChHHhc--ce-EEEEecCCCHHHHHHHHHHHHHHcCC--CCCHHHHHHHHHHc
Confidence 788777753 3355666677888999999998 55 47999999999999999998876532 23445678888888
Q ss_pred CC
Q 035561 661 AL 662 (979)
Q Consensus 661 ~G 662 (979)
.|
T Consensus 208 ~G 209 (504)
T PRK14963 208 DG 209 (504)
T ss_pred CC
Confidence 77
No 80
>PRK07940 DNA polymerase III subunit delta'; Validated
Probab=99.50 E-value=2.1e-13 Score=156.64 Aligned_cols=191 Identities=19% Similarity=0.210 Sum_probs=130.2
Q ss_pred CCCcccCcHHHHHHHHHHHHhhcChhHHHhcCCCCCceeEecCCCCCChHHHHHHHHHHcCCCEE-Eeec------hhhh
Q 035561 453 PLKDFASVESMREEINEVVAFLQNPSAFQEMGARAPRGVLIVGERGTGKTSLALAIAAEARVPVV-NVEA------QELE 525 (979)
Q Consensus 453 ~f~DIvGleevke~L~eiV~~L~~p~~f~~lG~~~P~gVLL~GPPGTGKTtLArAlA~elg~~~i-~Is~------sdL~ 525 (979)
.|++|+|++.+++.|+..+..-+. .+...+.+.|.++||+||||+|||++|+++|+.+.++-- ...| ..+.
T Consensus 3 ~f~~IiGq~~~~~~L~~~i~~~~~--~~~~~~~~l~ha~Lf~Gp~G~GKt~lA~~lA~~l~c~~~~~~~Cg~C~~C~~~~ 80 (394)
T PRK07940 3 VWDDLVGQEAVVAELRAAARAARA--DVAAAGSGMTHAWLFTGPPGSGRSVAARAFAAALQCTDPDEPGCGECRACRTVL 80 (394)
T ss_pred hhhhccChHHHHHHHHHHHHhccc--cccccCCCCCeEEEEECCCCCcHHHHHHHHHHHhCCCCCCCCCCCCCHHHHHHh
Confidence 589999999999999988865322 123345567889999999999999999999998754310 0001 1110
Q ss_pred hhh-----h-----cccchhhHHHHHHHHHhc----CCeEEEEcCccccccccccccCCCchhhHHHHHHHHhhhccccc
Q 035561 526 AGL-----W-----VGQSASNVRELFQTARDL----APVIIFVEDFDLFAGVRGQFIHTKQQDHESFINQLLVELDGFEK 591 (979)
Q Consensus 526 ~~~-----~-----vG~~~~~Ir~lF~~A~~~----aP~ILfIDEIDaL~~~r~~~~~~~~~~~~~iln~LL~~LDg~~~ 591 (979)
.+. + ...+...+|++++.+... ...|+||||+|.+. ....|.||+.|+...
T Consensus 81 ~~~hpD~~~i~~~~~~i~i~~iR~l~~~~~~~p~~~~~kViiIDead~m~--------------~~aanaLLk~LEep~- 145 (394)
T PRK07940 81 AGTHPDVRVVAPEGLSIGVDEVRELVTIAARRPSTGRWRIVVIEDADRLT--------------ERAANALLKAVEEPP- 145 (394)
T ss_pred cCCCCCEEEeccccccCCHHHHHHHHHHHHhCcccCCcEEEEEechhhcC--------------HHHHHHHHHHhhcCC-
Confidence 000 0 112345688888887642 24699999999883 234577888887542
Q ss_pred CCeEEEEecccchhhchhhhhcCCceeeEeccCCCCHHHHHHHHHHHHHhccchhhhhhhhHHHHHHHcCCCCHHHHHHH
Q 035561 592 QDGVVLMATTRNIKQIDEALQRPGRMDRIFNLQKPTQSEREKILRIAAQETMDEELIDLVDWRKVAEKTALLRPIELKLV 671 (979)
Q Consensus 592 ~~~ViVIATTN~pe~LDpALlRpgRFd~~I~~~~Pd~eeR~~IL~~~l~~~~~~~l~~dvdL~~LA~~T~GfsgaDL~~L 671 (979)
+++++|.+|++++.|+|+++| |+ ..+.|++|+.++..++|..... .+......++..+.|..+..+..+
T Consensus 146 -~~~~fIL~a~~~~~llpTIrS--Rc-~~i~f~~~~~~~i~~~L~~~~~-------~~~~~a~~la~~s~G~~~~A~~l~ 214 (394)
T PRK07940 146 -PRTVWLLCAPSPEDVLPTIRS--RC-RHVALRTPSVEAVAEVLVRRDG-------VDPETARRAARASQGHIGRARRLA 214 (394)
T ss_pred -CCCeEEEEECChHHChHHHHh--hC-eEEECCCCCHHHHHHHHHHhcC-------CCHHHHHHHHHHcCCCHHHHHHHh
Confidence 334444445558999999999 55 6999999999998888873221 123346678889999877665544
No 81
>TIGR00362 DnaA chromosomal replication initiator protein DnaA. DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006).
Probab=99.50 E-value=4.1e-13 Score=154.88 Aligned_cols=203 Identities=22% Similarity=0.319 Sum_probs=130.1
Q ss_pred CCCCCCCcc-cCcHHHHHHHHHHHHhhcChhHHHhcCCCCCceeEecCCCCCChHHHHHHHHHHc-----CCCEEEeech
Q 035561 449 NPPIPLKDF-ASVESMREEINEVVAFLQNPSAFQEMGARAPRGVLIVGERGTGKTSLALAIAAEA-----RVPVVNVEAQ 522 (979)
Q Consensus 449 ~~~~~f~DI-vGleevke~L~eiV~~L~~p~~f~~lG~~~P~gVLL~GPPGTGKTtLArAlA~el-----g~~~i~Is~s 522 (979)
.+..+|+++ +|... ............++ + .....++||||||||||+|++++++++ +..++++++.
T Consensus 104 ~~~~tfd~fi~g~~n-~~a~~~~~~~~~~~------~-~~~n~l~l~G~~G~GKThL~~ai~~~l~~~~~~~~v~yi~~~ 175 (405)
T TIGR00362 104 NPKYTFDNFVVGKSN-RLAHAAALAVAENP------G-KAYNPLFIYGGVGLGKTHLLHAIGNEILENNPNAKVVYVSSE 175 (405)
T ss_pred CCCCcccccccCCcH-HHHHHHHHHHHhCc------C-ccCCeEEEECCCCCcHHHHHHHHHHHHHHhCCCCcEEEEEHH
Confidence 456789994 46443 22222222222222 1 223569999999999999999999987 5789999998
Q ss_pred hhhhhhhcccch-hhHHHHHHHHHhcCCeEEEEcCccccccccccccCCCchhhHHHHHHHHhhhcccccCCeEEEEecc
Q 035561 523 ELEAGLWVGQSA-SNVRELFQTARDLAPVIIFVEDFDLFAGVRGQFIHTKQQDHESFINQLLVELDGFEKQDGVVLMATT 601 (979)
Q Consensus 523 dL~~~~~vG~~~-~~Ir~lF~~A~~~aP~ILfIDEIDaL~~~r~~~~~~~~~~~~~iln~LL~~LDg~~~~~~ViVIATT 601 (979)
++.. .+..... ..+....+..+ .+.+|+|||+|.+.++. .....|+..++.....+..+|++++
T Consensus 176 ~~~~-~~~~~~~~~~~~~~~~~~~--~~dlLiiDDi~~l~~~~------------~~~~~l~~~~n~~~~~~~~iiits~ 240 (405)
T TIGR00362 176 KFTN-DFVNALRNNKMEEFKEKYR--SVDLLLIDDIQFLAGKE------------RTQEEFFHTFNALHENGKQIVLTSD 240 (405)
T ss_pred HHHH-HHHHHHHcCCHHHHHHHHH--hCCEEEEehhhhhcCCH------------HHHHHHHHHHHHHHHCCCCEEEecC
Confidence 8752 2222111 11222222222 36799999999885422 1112333334333233445667666
Q ss_pred cchhh---chhhhhcCCcee--eEeccCCCCHHHHHHHHHHHHHhccchhhhhhhhHHHHHHHcCCCCHHHHHHHHHHHh
Q 035561 602 RNIKQ---IDEALQRPGRMD--RIFNLQKPTQSEREKILRIAAQETMDEELIDLVDWRKVAEKTALLRPIELKLVPVALE 676 (979)
Q Consensus 602 N~pe~---LDpALlRpgRFd--~~I~~~~Pd~eeR~~IL~~~l~~~~~~~l~~dvdL~~LA~~T~GfsgaDL~~Lv~aa~ 676 (979)
+.|.. +++.+++ ||. ..+.+++|+.++|..||+..++... ...++..+..||++..+ +..+|..+++.+.
T Consensus 241 ~~p~~l~~l~~~l~S--Rl~~g~~v~i~~pd~~~r~~il~~~~~~~~--~~l~~e~l~~ia~~~~~-~~r~l~~~l~~l~ 315 (405)
T TIGR00362 241 RPPKELPGLEERLRS--RFEWGLVVDIEPPDLETRLAILQKKAEEEG--LELPDEVLEFIAKNIRS-NVRELEGALNRLL 315 (405)
T ss_pred CCHHHHhhhhhhhhh--hccCCeEEEeCCCCHHHHHHHHHHHHHHcC--CCCCHHHHHHHHHhcCC-CHHHHHHHHHHHH
Confidence 66665 5688888 886 4799999999999999999988652 33455668889988877 6677777766665
Q ss_pred hhh
Q 035561 677 GSA 679 (979)
Q Consensus 677 ~aa 679 (979)
..+
T Consensus 316 ~~a 318 (405)
T TIGR00362 316 AYA 318 (405)
T ss_pred HHH
Confidence 544
No 82
>KOG0989 consensus Replication factor C, subunit RFC4 [Replication, recombination and repair]
Probab=99.50 E-value=2e-13 Score=148.49 Aligned_cols=201 Identities=20% Similarity=0.253 Sum_probs=139.2
Q ss_pred cccCCCCCCCCcccCcHHHHHHHHHHHHhhcChhHHHhcCCCCCceeEecCCCCCChHHHHHHHHHHcCCC------EEE
Q 035561 445 KRVKNPPIPLKDFASVESMREEINEVVAFLQNPSAFQEMGARAPRGVLIVGERGTGKTSLALAIAAEARVP------VVN 518 (979)
Q Consensus 445 ~~v~~~~~~f~DIvGleevke~L~eiV~~L~~p~~f~~lG~~~P~gVLL~GPPGTGKTtLArAlA~elg~~------~i~ 518 (979)
+..+++|.+|+|++|++.+++.|...+.. +.--++|||||||||||+.|+++|++++.+ +.+
T Consensus 26 wteKYrPkt~de~~gQe~vV~~L~~a~~~------------~~lp~~LFyGPpGTGKTStalafar~L~~~~~~~~rvl~ 93 (346)
T KOG0989|consen 26 WTEKYRPKTFDELAGQEHVVQVLKNALLR------------RILPHYLFYGPPGTGKTSTALAFARALNCEQLFPCRVLE 93 (346)
T ss_pred hHHHhCCCcHHhhcchHHHHHHHHHHHhh------------cCCceEEeeCCCCCcHhHHHHHHHHHhcCccccccchhh
Confidence 44578899999999999999999865532 222369999999999999999999999752 334
Q ss_pred eechhhhhhhhcccchhhHHHHHHHHHhc---------CC-eEEEEcCccccccccccccCCCchhhHHHHHHHHhhhcc
Q 035561 519 VEAQELEAGLWVGQSASNVRELFQTARDL---------AP-VIIFVEDFDLFAGVRGQFIHTKQQDHESFINQLLVELDG 588 (979)
Q Consensus 519 Is~sdL~~~~~vG~~~~~Ir~lF~~A~~~---------aP-~ILfIDEIDaL~~~r~~~~~~~~~~~~~iln~LL~~LDg 588 (979)
.+.|+.. +. +....++. -|...... .| .|++|||+|.+. ...-+.|...|+.
T Consensus 94 lnaSder-Gi--svvr~Kik-~fakl~~~~~~~~~~~~~~fKiiIlDEcdsmt--------------sdaq~aLrr~mE~ 155 (346)
T KOG0989|consen 94 LNASDER-GI--SVVREKIK-NFAKLTVLLKRSDGYPCPPFKIIILDECDSMT--------------SDAQAALRRTMED 155 (346)
T ss_pred hcccccc-cc--cchhhhhc-CHHHHhhccccccCCCCCcceEEEEechhhhh--------------HHHHHHHHHHHhc
Confidence 4555432 11 11122222 23333221 12 799999999883 3344567777887
Q ss_pred cccCCeEEEEecccchhhchhhhhcCCceeeEeccCCCCHHHHHHHHHHHHHhccchhhhhhhhHHHHHHHcCCCCHHHH
Q 035561 589 FEKQDGVVLMATTRNIKQIDEALQRPGRMDRIFNLQKPTQSEREKILRIAAQETMDEELIDLVDWRKVAEKTALLRPIEL 668 (979)
Q Consensus 589 ~~~~~~ViVIATTN~pe~LDpALlRpgRFd~~I~~~~Pd~eeR~~IL~~~l~~~~~~~l~~dvdL~~LA~~T~GfsgaDL 668 (979)
+... +.+|..||.++.|++.+.+ |. ..+.|+....+.....|+..+.+.. -..++-.++.+++.++| ||
T Consensus 156 ~s~~--trFiLIcnylsrii~pi~S--RC-~KfrFk~L~d~~iv~rL~~Ia~~E~--v~~d~~al~~I~~~S~G----dL 224 (346)
T KOG0989|consen 156 FSRT--TRFILICNYLSRIIRPLVS--RC-QKFRFKKLKDEDIVDRLEKIASKEG--VDIDDDALKLIAKISDG----DL 224 (346)
T ss_pred cccc--eEEEEEcCChhhCChHHHh--hH-HHhcCCCcchHHHHHHHHHHHHHhC--CCCCHHHHHHHHHHcCC----cH
Confidence 6554 4556669999999999988 44 5788999988888888888877653 22344557788887776 88
Q ss_pred HHHHHHHhhhhhccCCCC
Q 035561 669 KLVPVALEGSAFRSKFLD 686 (979)
Q Consensus 669 ~~Lv~aa~~aa~r~~~~s 686 (979)
......++..+...+.++
T Consensus 225 R~Ait~Lqsls~~gk~It 242 (346)
T KOG0989|consen 225 RRAITTLQSLSLLGKRIT 242 (346)
T ss_pred HHHHHHHHHhhccCcccc
Confidence 877777777666544444
No 83
>TIGR00382 clpX endopeptidase Clp ATP-binding regulatory subunit (clpX). A member of the ATP-dependent proteases, ClpX has ATP-dependent chaperone activity and is required for specific ATP-dependent proteolytic activities expressed by ClpPX. The gene is also found to be involved in stress tolerance in Bacillus subtilis and is essential for the efficient acquisition of genes specifying type IA and IB restriction.
Probab=99.50 E-value=5.6e-13 Score=153.50 Aligned_cols=181 Identities=20% Similarity=0.261 Sum_probs=122.4
Q ss_pred cccCcHHHHHHHHHHHHh----hcCh-hHHHhcCCC-CCceeEecCCCCCChHHHHHHHHHHcCCCEEEeechhhhhhhh
Q 035561 456 DFASVESMREEINEVVAF----LQNP-SAFQEMGAR-APRGVLIVGERGTGKTSLALAIAAEARVPVVNVEAQELEAGLW 529 (979)
Q Consensus 456 DIvGleevke~L~eiV~~----L~~p-~~f~~lG~~-~P~gVLL~GPPGTGKTtLArAlA~elg~~~i~Is~sdL~~~~~ 529 (979)
-|+|++++++.|...+.. +... ......++. .+.++||+||||||||++|+++|..++.||..++++.+....|
T Consensus 78 ~ViGQe~A~~~l~~av~~h~~~~~~~~~~~~~~~~~~~~~~iLL~GP~GsGKT~lAraLA~~l~~pf~~~da~~L~~~gy 157 (413)
T TIGR00382 78 YVIGQEQAKKVLSVAVYNHYKRLNFEKNKKSDNGVELSKSNILLIGPTGSGKTLLAQTLARILNVPFAIADATTLTEAGY 157 (413)
T ss_pred eecCHHHHHHHHHHHHHHHHhhhccccccccccccccCCceEEEECCCCcCHHHHHHHHHHhcCCCeEEechhhcccccc
Confidence 379999999999765521 2110 000000111 2368999999999999999999999999999999998764457
Q ss_pred cccc-hhhHHHHHHHH----HhcCCeEEEEcCccccccccccccCCCchhhHHHHHHHHhhhcccc-----------cCC
Q 035561 530 VGQS-ASNVRELFQTA----RDLAPVIIFVEDFDLFAGVRGQFIHTKQQDHESFINQLLVELDGFE-----------KQD 593 (979)
Q Consensus 530 vG~~-~~~Ir~lF~~A----~~~aP~ILfIDEIDaL~~~r~~~~~~~~~~~~~iln~LL~~LDg~~-----------~~~ 593 (979)
+|.. +..+..++..+ ....|+||||||+|.+.+++...+.+.+-..+.+.+.||+.|+|.. +..
T Consensus 158 vG~d~e~~L~~~~~~~~~~l~~a~~gIV~lDEIdkl~~~~~~~s~~~dvsg~~vq~~LL~iLeG~~~~v~~~~gr~~~~~ 237 (413)
T TIGR00382 158 VGEDVENILLKLLQAADYDVEKAQKGIIYIDEIDKISRKSENPSITRDVSGEGVQQALLKIIEGTVANVPPQGGRKHPYQ 237 (413)
T ss_pred ccccHHHHHHHHHHhCcccHHhcccceEEecccchhchhhccccccccccchhHHHHHHHHhhccceecccCCCccccCC
Confidence 7875 34444444432 2346899999999999875433222222222356777888887631 113
Q ss_pred eEEEEecccch-------------------------------------h-------------hchhhhhcCCceeeEecc
Q 035561 594 GVVLMATTRNI-------------------------------------K-------------QIDEALQRPGRMDRIFNL 623 (979)
Q Consensus 594 ~ViVIATTN~p-------------------------------------e-------------~LDpALlRpgRFd~~I~~ 623 (979)
+.++|.|+|-. + -+.|+|+. |+|.++.|
T Consensus 238 ~~i~i~TsNilfi~~Gaf~g~~~i~~~r~~~~~~gf~~~~~~~~~~~~~~~~~~~~~dl~~~g~~PEflg--Rld~Iv~f 315 (413)
T TIGR00382 238 EFIQIDTSNILFICGGAFVGLEKIIKKRTGKSSIGFGAEVKKKSKEKADLLRQVEPEDLVKFGLIPEFIG--RLPVIATL 315 (413)
T ss_pred CeEEEEcCCceeeecccccChHHHHHHHhhhccccccccccccchhhHHHHHHHHHHHHHHHhhHHHHhC--CCCeEeec
Confidence 46777777750 0 03466766 99999999
Q ss_pred CCCCHHHHHHHHHHH
Q 035561 624 QKPTQSEREKILRIA 638 (979)
Q Consensus 624 ~~Pd~eeR~~IL~~~ 638 (979)
.+.+.++..+|+...
T Consensus 316 ~pL~~~~L~~Il~~~ 330 (413)
T TIGR00382 316 EKLDEEALIAILTKP 330 (413)
T ss_pred CCCCHHHHHHHHHHH
Confidence 999999999999874
No 84
>TIGR02397 dnaX_nterm DNA polymerase III, subunit gamma and tau. This model represents the well-conserved first ~ 365 amino acids of the translation of the dnaX gene. The full-length product of the dnaX gene in the model bacterium E. coli is the DNA polymerase III tau subunit. A translational frameshift leads to early termination and a truncated protein subunit gamma, about 1/3 shorter than tau and present in roughly equal amounts. This frameshift mechanism is not necessarily universal for species with DNA polymerase III but appears conserved in the exterme thermophile Thermus thermophilis.
Probab=99.49 E-value=1.3e-12 Score=147.11 Aligned_cols=185 Identities=18% Similarity=0.273 Sum_probs=132.2
Q ss_pred CCCCCCCCcccCcHHHHHHHHHHHHhhcChhHHHhcCCCCCceeEecCCCCCChHHHHHHHHHHcCCC------------
Q 035561 448 KNPPIPLKDFASVESMREEINEVVAFLQNPSAFQEMGARAPRGVLIVGERGTGKTSLALAIAAEARVP------------ 515 (979)
Q Consensus 448 ~~~~~~f~DIvGleevke~L~eiV~~L~~p~~f~~lG~~~P~gVLL~GPPGTGKTtLArAlA~elg~~------------ 515 (979)
+.++.+|+|++|++++++.|.+.+.. .+.|..+|||||||+|||++|+++|+.+..+
T Consensus 7 ~~rp~~~~~iig~~~~~~~l~~~~~~-----------~~~~~~~Ll~G~~G~GKt~~a~~la~~l~~~~~~~~~~c~~c~ 75 (355)
T TIGR02397 7 KYRPQTFEDVIGQEHIVQTLKNAIKN-----------GRIAHAYLFSGPRGTGKTSIARIFAKALNCQNGPDGEPCNECE 75 (355)
T ss_pred HhCCCcHhhccCcHHHHHHHHHHHHc-----------CCCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCH
Confidence 56788999999999999998865531 2345679999999999999999999997532
Q ss_pred ------------EEEeechhhhhhhhcccchhhHHHHHHHHHhc----CCeEEEEcCccccccccccccCCCchhhHHHH
Q 035561 516 ------------VVNVEAQELEAGLWVGQSASNVRELFQTARDL----APVIIFVEDFDLFAGVRGQFIHTKQQDHESFI 579 (979)
Q Consensus 516 ------------~i~Is~sdL~~~~~vG~~~~~Ir~lF~~A~~~----aP~ILfIDEIDaL~~~r~~~~~~~~~~~~~il 579 (979)
++.+++.+ ..+...++++++.+... ...|++|||+|.+. ....
T Consensus 76 ~c~~~~~~~~~~~~~~~~~~-------~~~~~~~~~l~~~~~~~p~~~~~~vviidea~~l~--------------~~~~ 134 (355)
T TIGR02397 76 SCKEINSGSSLDVIEIDAAS-------NNGVDDIREILDNVKYAPSSGKYKVYIIDEVHMLS--------------KSAF 134 (355)
T ss_pred HHHHHhcCCCCCEEEeeccc-------cCCHHHHHHHHHHHhcCcccCCceEEEEeChhhcC--------------HHHH
Confidence 12222110 12334577788877542 23699999999772 2346
Q ss_pred HHHHhhhcccccCCeEEEEecccchhhchhhhhcCCceeeEeccCCCCHHHHHHHHHHHHHhccchhhhhhhhHHHHHHH
Q 035561 580 NQLLVELDGFEKQDGVVLMATTRNIKQIDEALQRPGRMDRIFNLQKPTQSEREKILRIAAQETMDEELIDLVDWRKVAEK 659 (979)
Q Consensus 580 n~LL~~LDg~~~~~~ViVIATTN~pe~LDpALlRpgRFd~~I~~~~Pd~eeR~~IL~~~l~~~~~~~l~~dvdL~~LA~~ 659 (979)
+.|+..++.. ...+++|.+|++++.+.+++++ |+ ..+++++|+.++..++++..++.... ..++..+..++..
T Consensus 135 ~~Ll~~le~~--~~~~~lIl~~~~~~~l~~~l~s--r~-~~~~~~~~~~~~l~~~l~~~~~~~g~--~i~~~a~~~l~~~ 207 (355)
T TIGR02397 135 NALLKTLEEP--PEHVVFILATTEPHKIPATILS--RC-QRFDFKRIPLEDIVERLKKILDKEGI--KIEDEALELIARA 207 (355)
T ss_pred HHHHHHHhCC--ccceeEEEEeCCHHHHHHHHHh--he-eEEEcCCCCHHHHHHHHHHHHHHcCC--CCCHHHHHHHHHH
Confidence 6778777653 3456667778889999999998 76 57899999999999999998876532 2344566777887
Q ss_pred cCCCCHHHHHHHH
Q 035561 660 TALLRPIELKLVP 672 (979)
Q Consensus 660 T~GfsgaDL~~Lv 672 (979)
+.| ++..+.+.+
T Consensus 208 ~~g-~~~~a~~~l 219 (355)
T TIGR02397 208 ADG-SLRDALSLL 219 (355)
T ss_pred cCC-ChHHHHHHH
Confidence 766 444444443
No 85
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=99.49 E-value=8.4e-13 Score=139.24 Aligned_cols=190 Identities=17% Similarity=0.208 Sum_probs=123.1
Q ss_pred CCCCCCcccC--cHHHHHHHHHHHHhhcChhHHHhcCCCCCceeEecCCCCCChHHHHHHHHHHc---CCCEEEeechhh
Q 035561 450 PPIPLKDFAS--VESMREEINEVVAFLQNPSAFQEMGARAPRGVLIVGERGTGKTSLALAIAAEA---RVPVVNVEAQEL 524 (979)
Q Consensus 450 ~~~~f~DIvG--leevke~L~eiV~~L~~p~~f~~lG~~~P~gVLL~GPPGTGKTtLArAlA~el---g~~~i~Is~sdL 524 (979)
.+.+|+++++ ...+.+.|+..+. ...+.+++|+||||||||++|++++.++ +.++++++|+++
T Consensus 10 ~~~~~~~~~~~~~~~~~~~l~~~~~------------~~~~~~lll~G~~G~GKT~la~~~~~~~~~~~~~~~~i~~~~~ 77 (226)
T TIGR03420 10 DDPTFDNFYAGGNAELLAALRQLAA------------GKGDRFLYLWGESGSGKSHLLQAACAAAEERGKSAIYLPLAEL 77 (226)
T ss_pred CchhhcCcCcCCcHHHHHHHHHHHh------------cCCCCeEEEECCCCCCHHHHHHHHHHHHHhcCCcEEEEeHHHH
Confidence 3467888873 4445666654431 2346789999999999999999999886 578999999887
Q ss_pred hhhhhcccchhhHHHHHHHHHhcCCeEEEEcCccccccccccccCCCchhhHHHHHHHHhhhcccccCCeEEEEecccch
Q 035561 525 EAGLWVGQSASNVRELFQTARDLAPVIIFVEDFDLFAGVRGQFIHTKQQDHESFINQLLVELDGFEKQDGVVLMATTRNI 604 (979)
Q Consensus 525 ~~~~~vG~~~~~Ir~lF~~A~~~aP~ILfIDEIDaL~~~r~~~~~~~~~~~~~iln~LL~~LDg~~~~~~ViVIATTN~p 604 (979)
.. . ..+++.... .+.+|+|||+|.+.... .. ...|...++.....+..+|++++..+
T Consensus 78 ~~-~--------~~~~~~~~~--~~~lLvIDdi~~l~~~~---------~~---~~~L~~~l~~~~~~~~~iIits~~~~ 134 (226)
T TIGR03420 78 AQ-A--------DPEVLEGLE--QADLVCLDDVEAIAGQP---------EW---QEALFHLYNRVREAGGRLLIAGRAAP 134 (226)
T ss_pred HH-h--------HHHHHhhcc--cCCEEEEeChhhhcCCh---------HH---HHHHHHHHHHHHHcCCeEEEECCCCh
Confidence 52 1 123333332 34699999999874211 11 12233333332222334555555555
Q ss_pred hhch---hhhhcCCce--eeEeccCCCCHHHHHHHHHHHHHhccchhhhhhhhHHHHHHHcCCCCHHHHHHHHHHHhhhh
Q 035561 605 KQID---EALQRPGRM--DRIFNLQKPTQSEREKILRIAAQETMDEELIDLVDWRKVAEKTALLRPIELKLVPVALEGSA 679 (979)
Q Consensus 605 e~LD---pALlRpgRF--d~~I~~~~Pd~eeR~~IL~~~l~~~~~~~l~~dvdL~~LA~~T~GfsgaDL~~Lv~aa~~aa 679 (979)
..++ +.+.+ || ...+.+|+|+.+++..+++.++.+.. ...++.-+..|++.++| +..++.+++..+..++
T Consensus 135 ~~~~~~~~~L~~--r~~~~~~i~l~~l~~~e~~~~l~~~~~~~~--~~~~~~~l~~L~~~~~g-n~r~L~~~l~~~~~~~ 209 (226)
T TIGR03420 135 AQLPLRLPDLRT--RLAWGLVFQLPPLSDEEKIAALQSRAARRG--LQLPDEVADYLLRHGSR-DMGSLMALLDALDRAS 209 (226)
T ss_pred HHCCcccHHHHH--HHhcCeeEecCCCCHHHHHHHHHHHHHHcC--CCCCHHHHHHHHHhccC-CHHHHHHHHHHHHHHH
Confidence 5443 77877 65 47899999999999999998776432 22344556788886555 7788888776655443
No 86
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=99.49 E-value=4.6e-13 Score=160.93 Aligned_cols=194 Identities=16% Similarity=0.217 Sum_probs=137.5
Q ss_pred CCCCCCCCcccCcHHHHHHHHHHHHhhcChhHHHhcCCCCCceeEecCCCCCChHHHHHHHHHHcCCCEE-------Ee-
Q 035561 448 KNPPIPLKDFASVESMREEINEVVAFLQNPSAFQEMGARAPRGVLIVGERGTGKTSLALAIAAEARVPVV-------NV- 519 (979)
Q Consensus 448 ~~~~~~f~DIvGleevke~L~eiV~~L~~p~~f~~lG~~~P~gVLL~GPPGTGKTtLArAlA~elg~~~i-------~I- 519 (979)
++++.+|+||+|++.+++.|+..+.. .+.|.++||+||+|||||++|+++|+.++++-. .+
T Consensus 9 KYRP~tFddIIGQe~vv~~L~~ai~~-----------~rl~Ha~Lf~GP~GvGKTTlAriLAk~LnC~~~~~~~pCg~C~ 77 (709)
T PRK08691 9 KWRPKTFADLVGQEHVVKALQNALDE-----------GRLHHAYLLTGTRGVGKTTIARILAKSLNCENAQHGEPCGVCQ 77 (709)
T ss_pred HhCCCCHHHHcCcHHHHHHHHHHHHc-----------CCCCeEEEEECCCCCcHHHHHHHHHHHhcccCCCCCCCCcccH
Confidence 57788999999999999999876532 245678999999999999999999999865311 00
Q ss_pred echhhhhhhh---------cccchhhHHHHHHHHHh----cCCeEEEEcCccccccccccccCCCchhhHHHHHHHHhhh
Q 035561 520 EAQELEAGLW---------VGQSASNVRELFQTARD----LAPVIIFVEDFDLFAGVRGQFIHTKQQDHESFINQLLVEL 586 (979)
Q Consensus 520 s~sdL~~~~~---------vG~~~~~Ir~lF~~A~~----~aP~ILfIDEIDaL~~~r~~~~~~~~~~~~~iln~LL~~L 586 (979)
+|..+..+.+ .+.+...+|++++.+.. ....|++|||+|.+. ....+.||+.|
T Consensus 78 sCr~i~~g~~~DvlEidaAs~~gVd~IRelle~a~~~P~~gk~KVIIIDEad~Ls--------------~~A~NALLKtL 143 (709)
T PRK08691 78 SCTQIDAGRYVDLLEIDAASNTGIDNIREVLENAQYAPTAGKYKVYIIDEVHMLS--------------KSAFNAMLKTL 143 (709)
T ss_pred HHHHHhccCccceEEEeccccCCHHHHHHHHHHHHhhhhhCCcEEEEEECccccC--------------HHHHHHHHHHH
Confidence 1111111111 12334567888776542 234799999999772 23467788888
Q ss_pred cccccCCeEEEEecccchhhchhhhhcCCceeeEeccCCCCHHHHHHHHHHHHHhccchhhhhhhhHHHHHHHcCCCCHH
Q 035561 587 DGFEKQDGVVLMATTRNIKQIDEALQRPGRMDRIFNLQKPTQSEREKILRIAAQETMDEELIDLVDWRKVAEKTALLRPI 666 (979)
Q Consensus 587 Dg~~~~~~ViVIATTN~pe~LDpALlRpgRFd~~I~~~~Pd~eeR~~IL~~~l~~~~~~~l~~dvdL~~LA~~T~Gfsga 666 (979)
+.. .+.+.+|.+|+.+..+.+.+++ |+ ..+.|+.++.++....|+..++... ...++..+..|++.+.| +..
T Consensus 144 EEP--p~~v~fILaTtd~~kL~~TIrS--RC-~~f~f~~Ls~eeI~~~L~~Il~kEg--i~id~eAL~~Ia~~A~G-slR 215 (709)
T PRK08691 144 EEP--PEHVKFILATTDPHKVPVTVLS--RC-LQFVLRNMTAQQVADHLAHVLDSEK--IAYEPPALQLLGRAAAG-SMR 215 (709)
T ss_pred HhC--CCCcEEEEEeCCccccchHHHH--HH-hhhhcCCCCHHHHHHHHHHHHHHcC--CCcCHHHHHHHHHHhCC-CHH
Confidence 753 3456677777888999999988 65 6788999999999999998887652 22345567888888877 555
Q ss_pred HHHHHHHH
Q 035561 667 ELKLVPVA 674 (979)
Q Consensus 667 DL~~Lv~a 674 (979)
++.+++..
T Consensus 216 dAlnLLDq 223 (709)
T PRK08691 216 DALSLLDQ 223 (709)
T ss_pred HHHHHHHH
Confidence 66655533
No 87
>PRK05563 DNA polymerase III subunits gamma and tau; Validated
Probab=99.49 E-value=1e-12 Score=157.34 Aligned_cols=186 Identities=16% Similarity=0.235 Sum_probs=134.8
Q ss_pred CCCCCCCCcccCcHHHHHHHHHHHHhhcChhHHHhcCCCCCceeEecCCCCCChHHHHHHHHHHcCCC------------
Q 035561 448 KNPPIPLKDFASVESMREEINEVVAFLQNPSAFQEMGARAPRGVLIVGERGTGKTSLALAIAAEARVP------------ 515 (979)
Q Consensus 448 ~~~~~~f~DIvGleevke~L~eiV~~L~~p~~f~~lG~~~P~gVLL~GPPGTGKTtLArAlA~elg~~------------ 515 (979)
+.+|.+|+|++|++.+++.|+..+.. .+.+..+||+||+|||||++|+.+|+.++++
T Consensus 9 k~rP~~f~~viGq~~v~~~L~~~i~~-----------~~~~hayLf~Gp~GtGKTt~Ak~lAkal~c~~~~~~~pC~~C~ 77 (559)
T PRK05563 9 KWRPQTFEDVVGQEHITKTLKNAIKQ-----------GKISHAYLFSGPRGTGKTSAAKIFAKAVNCLNPPDGEPCNECE 77 (559)
T ss_pred HhCCCcHHhccCcHHHHHHHHHHHHc-----------CCCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCccH
Confidence 46788999999999999999866542 2345678999999999999999999987532
Q ss_pred ------------EEEeechhhhhhhhcccchhhHHHHHHHHHh----cCCeEEEEcCccccccccccccCCCchhhHHHH
Q 035561 516 ------------VVNVEAQELEAGLWVGQSASNVRELFQTARD----LAPVIIFVEDFDLFAGVRGQFIHTKQQDHESFI 579 (979)
Q Consensus 516 ------------~i~Is~sdL~~~~~vG~~~~~Ir~lF~~A~~----~aP~ILfIDEIDaL~~~r~~~~~~~~~~~~~il 579 (979)
++.++++ .+.+...+|++.+.+.. ....|++|||+|.|. ....
T Consensus 78 ~C~~i~~g~~~dv~eidaa-------s~~~vd~ir~i~~~v~~~p~~~~~kViIIDE~~~Lt--------------~~a~ 136 (559)
T PRK05563 78 ICKAITNGSLMDVIEIDAA-------SNNGVDEIRDIRDKVKYAPSEAKYKVYIIDEVHMLS--------------TGAF 136 (559)
T ss_pred HHHHHhcCCCCCeEEeecc-------ccCCHHHHHHHHHHHhhCcccCCeEEEEEECcccCC--------------HHHH
Confidence 2222221 12345567888877653 234799999999872 3357
Q ss_pred HHHHhhhcccccCCeEEEEecccchhhchhhhhcCCceeeEeccCCCCHHHHHHHHHHHHHhccchhhhhhhhHHHHHHH
Q 035561 580 NQLLVELDGFEKQDGVVLMATTRNIKQIDEALQRPGRMDRIFNLQKPTQSEREKILRIAAQETMDEELIDLVDWRKVAEK 659 (979)
Q Consensus 580 n~LL~~LDg~~~~~~ViVIATTN~pe~LDpALlRpgRFd~~I~~~~Pd~eeR~~IL~~~l~~~~~~~l~~dvdL~~LA~~ 659 (979)
|.||+.|+.. ...+++|.+|+.++.+++.+++ |+ ..+.|++|+.++....++..+++.. ...++..+..+|+.
T Consensus 137 naLLKtLEep--p~~~ifIlatt~~~ki~~tI~S--Rc-~~~~f~~~~~~ei~~~L~~i~~~eg--i~i~~~al~~ia~~ 209 (559)
T PRK05563 137 NALLKTLEEP--PAHVIFILATTEPHKIPATILS--RC-QRFDFKRISVEDIVERLKYILDKEG--IEYEDEALRLIARA 209 (559)
T ss_pred HHHHHHhcCC--CCCeEEEEEeCChhhCcHHHHh--Hh-eEEecCCCCHHHHHHHHHHHHHHcC--CCCCHHHHHHHHHH
Confidence 7888888753 3455666666778999999998 65 4688999999999999999887642 12345567788888
Q ss_pred cCCCCHHHHHHHHH
Q 035561 660 TALLRPIELKLVPV 673 (979)
Q Consensus 660 T~GfsgaDL~~Lv~ 673 (979)
+.| +..+..++..
T Consensus 210 s~G-~~R~al~~Ld 222 (559)
T PRK05563 210 AEG-GMRDALSILD 222 (559)
T ss_pred cCC-CHHHHHHHHH
Confidence 877 5555555443
No 88
>PRK06893 DNA replication initiation factor; Validated
Probab=99.49 E-value=8.4e-13 Score=141.23 Aligned_cols=192 Identities=11% Similarity=0.108 Sum_probs=120.0
Q ss_pred CCCCCCCcccCcHHHHHHHHHHHHhhcChhHHHhcCCCCCceeEecCCCCCChHHHHHHHHHHc---CCCEEEeechhhh
Q 035561 449 NPPIPLKDFASVESMREEINEVVAFLQNPSAFQEMGARAPRGVLIVGERGTGKTSLALAIAAEA---RVPVVNVEAQELE 525 (979)
Q Consensus 449 ~~~~~f~DIvGleevke~L~eiV~~L~~p~~f~~lG~~~P~gVLL~GPPGTGKTtLArAlA~el---g~~~i~Is~sdL~ 525 (979)
.++.+|++++|.++.. .+..+.. .+. + .....++||||||||||+|++++|+++ +....+++..+..
T Consensus 10 ~~~~~fd~f~~~~~~~-~~~~~~~------~~~--~-~~~~~l~l~G~~G~GKThL~~ai~~~~~~~~~~~~y~~~~~~~ 79 (229)
T PRK06893 10 IDDETLDNFYADNNLL-LLDSLRK------NFI--D-LQQPFFYIWGGKSSGKSHLLKAVSNHYLLNQRTAIYIPLSKSQ 79 (229)
T ss_pred CCcccccccccCChHH-HHHHHHH------Hhh--c-cCCCeEEEECCCCCCHHHHHHHHHHHHHHcCCCeEEeeHHHhh
Confidence 4567999999776432 1111111 111 1 112358999999999999999999986 4455666654321
Q ss_pred hhhhcccchhhHHHHHHHHHhcCCeEEEEcCccccccccccccCCCchhhHHHHHHHHhhhcccccCC-eEEEEecccch
Q 035561 526 AGLWVGQSASNVRELFQTARDLAPVIIFVEDFDLFAGVRGQFIHTKQQDHESFINQLLVELDGFEKQD-GVVLMATTRNI 604 (979)
Q Consensus 526 ~~~~vG~~~~~Ir~lF~~A~~~aP~ILfIDEIDaL~~~r~~~~~~~~~~~~~iln~LL~~LDg~~~~~-~ViVIATTN~p 604 (979)
. ...++++... +..+|+|||++.+.+.. ..... |+..++...... .++|++++..|
T Consensus 80 -~--------~~~~~~~~~~--~~dlLilDDi~~~~~~~---------~~~~~---l~~l~n~~~~~~~~illits~~~p 136 (229)
T PRK06893 80 -Y--------FSPAVLENLE--QQDLVCLDDLQAVIGNE---------EWELA---IFDLFNRIKEQGKTLLLISADCSP 136 (229)
T ss_pred -h--------hhHHHHhhcc--cCCEEEEeChhhhcCCh---------HHHHH---HHHHHHHHHHcCCcEEEEeCCCCh
Confidence 1 0112233332 45799999999875321 12222 333333333333 35566677778
Q ss_pred hhch---hhhhcCCceeeEeccCCCCHHHHHHHHHHHHHhccchhhhhhhhHHHHHHHcCCCCHHHHHHHHHHHh
Q 035561 605 KQID---EALQRPGRMDRIFNLQKPTQSEREKILRIAAQETMDEELIDLVDWRKVAEKTALLRPIELKLVPVALE 676 (979)
Q Consensus 605 e~LD---pALlRpgRFd~~I~~~~Pd~eeR~~IL~~~l~~~~~~~l~~dvdL~~LA~~T~GfsgaDL~~Lv~aa~ 676 (979)
..++ |.|+++.+++..+.++.|+.++|.+|++..+.... -..++.-+..|+++.+| +...+..+...+.
T Consensus 137 ~~l~~~~~~L~sRl~~g~~~~l~~pd~e~~~~iL~~~a~~~~--l~l~~~v~~~L~~~~~~-d~r~l~~~l~~l~ 208 (229)
T PRK06893 137 HALSIKLPDLASRLTWGEIYQLNDLTDEQKIIVLQRNAYQRG--IELSDEVANFLLKRLDR-DMHTLFDALDLLD 208 (229)
T ss_pred HHccccchhHHHHHhcCCeeeCCCCCHHHHHHHHHHHHHHcC--CCCCHHHHHHHHHhccC-CHHHHHHHHHHHH
Confidence 7765 88998556668999999999999999998887542 23455567889998887 4444554444443
No 89
>KOG2028 consensus ATPase related to the helicase subunit of the Holliday junction resolvase [Replication, recombination and repair]
Probab=99.49 E-value=3.5e-13 Score=148.53 Aligned_cols=196 Identities=24% Similarity=0.312 Sum_probs=133.4
Q ss_pred CCCCCCCcccCcHHHHHHHHHHHHhhcChhHHHhcCCCCCceeEecCCCCCChHHHHHHHHHHcCCC---EEEeechhhh
Q 035561 449 NPPIPLKDFASVESMREEINEVVAFLQNPSAFQEMGARAPRGVLIVGERGTGKTSLALAIAAEARVP---VVNVEAQELE 525 (979)
Q Consensus 449 ~~~~~f~DIvGleevke~L~eiV~~L~~p~~f~~lG~~~P~gVLL~GPPGTGKTtLArAlA~elg~~---~i~Is~sdL~ 525 (979)
-++.+++|.+|++.+... ..++..+... -+. .+++|+||||||||+||+.|+.....+ |+++++..
T Consensus 132 mRPktL~dyvGQ~hlv~q-~gllrs~ieq-------~~i-pSmIlWGppG~GKTtlArlia~tsk~~SyrfvelSAt~-- 200 (554)
T KOG2028|consen 132 MRPKTLDDYVGQSHLVGQ-DGLLRSLIEQ-------NRI-PSMILWGPPGTGKTTLARLIASTSKKHSYRFVELSATN-- 200 (554)
T ss_pred cCcchHHHhcchhhhcCc-chHHHHHHHc-------CCC-CceEEecCCCCchHHHHHHHHhhcCCCceEEEEEeccc--
Confidence 356789999999987655 2222111111 011 259999999999999999999998766 77777643
Q ss_pred hhhhcccchhhHHHHHHHHHhc-----CCeEEEEcCccccccccccccCCCchhhHHHHHHHHhhhcccccCCeEEEEec
Q 035561 526 AGLWVGQSASNVRELFQTARDL-----APVIIFVEDFDLFAGVRGQFIHTKQQDHESFINQLLVELDGFEKQDGVVLMAT 600 (979)
Q Consensus 526 ~~~~vG~~~~~Ir~lF~~A~~~-----aP~ILfIDEIDaL~~~r~~~~~~~~~~~~~iln~LL~~LDg~~~~~~ViVIAT 600 (979)
.....+|++|+.++.. ...|||||||+.+... ++ ..|| --++.+.-.+|-||
T Consensus 201 ------a~t~dvR~ife~aq~~~~l~krkTilFiDEiHRFNks--------QQ------D~fL---P~VE~G~I~lIGAT 257 (554)
T KOG2028|consen 201 ------AKTNDVRDIFEQAQNEKSLTKRKTILFIDEIHRFNKS--------QQ------DTFL---PHVENGDITLIGAT 257 (554)
T ss_pred ------cchHHHHHHHHHHHHHHhhhcceeEEEeHHhhhhhhh--------hh------hccc---ceeccCceEEEecc
Confidence 2346789999999753 3689999999988432 11 1233 22234444556667
Q ss_pred ccchh-hchhhhhcCCceeeEeccCCCCHHHHHHHHHHHHHhccc---------hh--hhhhhhHHHHHHHcCCCCHHHH
Q 035561 601 TRNIK-QIDEALQRPGRMDRIFNLQKPTQSEREKILRIAAQETMD---------EE--LIDLVDWRKVAEKTALLRPIEL 668 (979)
Q Consensus 601 TN~pe-~LDpALlRpgRFd~~I~~~~Pd~eeR~~IL~~~l~~~~~---------~~--l~~dvdL~~LA~~T~GfsgaDL 668 (979)
|.+|. .|+.+|++.| +++.+...+.+....||...+....+ .+ ..++.-++.||..++|-....|
T Consensus 258 TENPSFqln~aLlSRC---~VfvLekL~~n~v~~iL~raia~l~dser~~~~l~n~s~~ve~siidyla~lsdGDaR~aL 334 (554)
T KOG2028|consen 258 TENPSFQLNAALLSRC---RVFVLEKLPVNAVVTILMRAIASLGDSERPTDPLPNSSMFVEDSIIDYLAYLSDGDARAAL 334 (554)
T ss_pred cCCCccchhHHHHhcc---ceeEeccCCHHHHHHHHHHHHHhhccccccCCCCCCcchhhhHHHHHHHHHhcCchHHHHH
Confidence 77776 7999999955 67888899999999999986552211 11 1445568889999999888878
Q ss_pred HHHHHHHhhhhhc
Q 035561 669 KLVPVALEGSAFR 681 (979)
Q Consensus 669 ~~Lv~aa~~aa~r 681 (979)
..|...+.....+
T Consensus 335 N~Lems~~m~~tr 347 (554)
T KOG2028|consen 335 NALEMSLSMFCTR 347 (554)
T ss_pred HHHHHHHHHHHhh
Confidence 7775544433333
No 90
>PRK00149 dnaA chromosomal replication initiation protein; Reviewed
Probab=99.48 E-value=5.9e-13 Score=155.67 Aligned_cols=204 Identities=22% Similarity=0.293 Sum_probs=129.9
Q ss_pred CCCCCCCcccCcHHHHHHHHHHHHhhcChhHHHhcCCCCCceeEecCCCCCChHHHHHHHHHHc-----CCCEEEeechh
Q 035561 449 NPPIPLKDFASVESMREEINEVVAFLQNPSAFQEMGARAPRGVLIVGERGTGKTSLALAIAAEA-----RVPVVNVEAQE 523 (979)
Q Consensus 449 ~~~~~f~DIvGleevke~L~eiV~~L~~p~~f~~lG~~~P~gVLL~GPPGTGKTtLArAlA~el-----g~~~i~Is~sd 523 (979)
.+..+|++++.-+.-...+........+| | ....+++||||||||||+|++++|+++ +..++++++.+
T Consensus 116 ~~~~tfd~fv~g~~n~~a~~~~~~~~~~~------~-~~~~~l~l~G~~G~GKThL~~ai~~~~~~~~~~~~v~yi~~~~ 188 (450)
T PRK00149 116 NPKYTFDNFVVGKSNRLAHAAALAVAENP------G-KAYNPLFIYGGVGLGKTHLLHAIGNYILEKNPNAKVVYVTSEK 188 (450)
T ss_pred CCCCcccccccCCCcHHHHHHHHHHHhCc------C-ccCCeEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEEEHHH
Confidence 46678999653233222333222222222 1 122469999999999999999999987 56789999988
Q ss_pred hhhhhhcccchhhHHHHHHHHHhcCCeEEEEcCccccccccccccCCCchhhHHHHHHHHhhhcccccCCeEEEEecccc
Q 035561 524 LEAGLWVGQSASNVRELFQTARDLAPVIIFVEDFDLFAGVRGQFIHTKQQDHESFINQLLVELDGFEKQDGVVLMATTRN 603 (979)
Q Consensus 524 L~~~~~vG~~~~~Ir~lF~~A~~~aP~ILfIDEIDaL~~~r~~~~~~~~~~~~~iln~LL~~LDg~~~~~~ViVIATTN~ 603 (979)
+. ..+..........-|..... .+.+|+|||+|.+.+++. ....|+..++........+|++++..
T Consensus 189 ~~-~~~~~~~~~~~~~~~~~~~~-~~dlLiiDDi~~l~~~~~------------~~~~l~~~~n~l~~~~~~iiits~~~ 254 (450)
T PRK00149 189 FT-NDFVNALRNNTMEEFKEKYR-SVDVLLIDDIQFLAGKER------------TQEEFFHTFNALHEAGKQIVLTSDRP 254 (450)
T ss_pred HH-HHHHHHHHcCcHHHHHHHHh-cCCEEEEehhhhhcCCHH------------HHHHHHHHHHHHHHCCCcEEEECCCC
Confidence 76 33333222111122332222 578999999998854221 11233333333323334567766666
Q ss_pred hhh---chhhhhcCCcee--eEeccCCCCHHHHHHHHHHHHHhccchhhhhhhhHHHHHHHcCCCCHHHHHHHHHHHhhh
Q 035561 604 IKQ---IDEALQRPGRMD--RIFNLQKPTQSEREKILRIAAQETMDEELIDLVDWRKVAEKTALLRPIELKLVPVALEGS 678 (979)
Q Consensus 604 pe~---LDpALlRpgRFd--~~I~~~~Pd~eeR~~IL~~~l~~~~~~~l~~dvdL~~LA~~T~GfsgaDL~~Lv~aa~~a 678 (979)
|.. +++.+++ ||. ..+.+++|+.++|.+||+..+.... ...++..++.||+++.| +..+|..+++.+...
T Consensus 255 p~~l~~l~~~l~S--Rl~~gl~v~i~~pd~~~r~~il~~~~~~~~--~~l~~e~l~~ia~~~~~-~~R~l~~~l~~l~~~ 329 (450)
T PRK00149 255 PKELPGLEERLRS--RFEWGLTVDIEPPDLETRIAILKKKAEEEG--IDLPDEVLEFIAKNITS-NVRELEGALNRLIAY 329 (450)
T ss_pred HHHHHHHHHHHHh--HhcCCeeEEecCCCHHHHHHHHHHHHHHcC--CCCCHHHHHHHHcCcCC-CHHHHHHHHHHHHHH
Confidence 665 6789988 886 5899999999999999999988642 23445568889998887 566666665555443
No 91
>PRK14969 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.47 E-value=1e-12 Score=156.32 Aligned_cols=193 Identities=18% Similarity=0.224 Sum_probs=132.9
Q ss_pred CCCCCCCCcccCcHHHHHHHHHHHHhhcChhHHHhcCCCCCceeEecCCCCCChHHHHHHHHHHcCCCE-------EEe-
Q 035561 448 KNPPIPLKDFASVESMREEINEVVAFLQNPSAFQEMGARAPRGVLIVGERGTGKTSLALAIAAEARVPV-------VNV- 519 (979)
Q Consensus 448 ~~~~~~f~DIvGleevke~L~eiV~~L~~p~~f~~lG~~~P~gVLL~GPPGTGKTtLArAlA~elg~~~-------i~I- 519 (979)
+++|.+|+||+|++.+++.|...+.. .+.+..+||+||||||||++|+++|+.+++.. -.+
T Consensus 9 k~rP~~f~divGq~~v~~~L~~~i~~-----------~~~~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pcg~C~ 77 (527)
T PRK14969 9 KWRPKSFSELVGQEHVVRALTNALEQ-----------QRLHHAYLFTGTRGVGKTTLARILAKSLNCETGVTATPCGVCS 77 (527)
T ss_pred HhCCCcHHHhcCcHHHHHHHHHHHHc-----------CCCCEEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCH
Confidence 56778999999999999988866532 23456789999999999999999999986521 110
Q ss_pred echhhhhhhh---------cccchhhHHHHHHHHHhc----CCeEEEEcCccccccccccccCCCchhhHHHHHHHHhhh
Q 035561 520 EAQELEAGLW---------VGQSASNVRELFQTARDL----APVIIFVEDFDLFAGVRGQFIHTKQQDHESFINQLLVEL 586 (979)
Q Consensus 520 s~sdL~~~~~---------vG~~~~~Ir~lF~~A~~~----aP~ILfIDEIDaL~~~r~~~~~~~~~~~~~iln~LL~~L 586 (979)
+|..+..+.+ ...+...+|++.+.+... ...|++|||+|.+. ....|.||+.|
T Consensus 78 ~C~~i~~~~~~d~~ei~~~~~~~vd~ir~l~~~~~~~p~~~~~kVvIIDEad~ls--------------~~a~naLLK~L 143 (527)
T PRK14969 78 ACLEIDSGRFVDLIEVDAASNTQVDAMRELLDNAQYAPTRGRFKVYIIDEVHMLS--------------KSAFNAMLKTL 143 (527)
T ss_pred HHHHHhcCCCCceeEeeccccCCHHHHHHHHHHHhhCcccCCceEEEEcCcccCC--------------HHHHHHHHHHH
Confidence 0111110000 012345677777776431 24699999999872 23567888888
Q ss_pred cccccCCeEEEEecccchhhchhhhhcCCceeeEeccCCCCHHHHHHHHHHHHHhccchhhhhhhhHHHHHHHcCCCCHH
Q 035561 587 DGFEKQDGVVLMATTRNIKQIDEALQRPGRMDRIFNLQKPTQSEREKILRIAAQETMDEELIDLVDWRKVAEKTALLRPI 666 (979)
Q Consensus 587 Dg~~~~~~ViVIATTN~pe~LDpALlRpgRFd~~I~~~~Pd~eeR~~IL~~~l~~~~~~~l~~dvdL~~LA~~T~Gfsga 666 (979)
+.. .+.+++|.+|++++.+.+.+++ |+ ..++|+.++.++....++..++... ...+...+..|++.+.| +..
T Consensus 144 Eep--p~~~~fIL~t~d~~kil~tI~S--Rc-~~~~f~~l~~~~i~~~L~~il~~eg--i~~~~~al~~la~~s~G-slr 215 (527)
T PRK14969 144 EEP--PEHVKFILATTDPQKIPVTVLS--RC-LQFNLKQMPPPLIVSHLQHILEQEN--IPFDATALQLLARAAAG-SMR 215 (527)
T ss_pred hCC--CCCEEEEEEeCChhhCchhHHH--HH-HHHhcCCCCHHHHHHHHHHHHHHcC--CCCCHHHHHHHHHHcCC-CHH
Confidence 763 3455666667778888888888 54 7899999999999999988876542 22345567788888877 445
Q ss_pred HHHHHHH
Q 035561 667 ELKLVPV 673 (979)
Q Consensus 667 DL~~Lv~ 673 (979)
+..+++.
T Consensus 216 ~al~lld 222 (527)
T PRK14969 216 DALSLLD 222 (527)
T ss_pred HHHHHHH
Confidence 5555543
No 92
>PRK14951 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.47 E-value=1.1e-12 Score=157.47 Aligned_cols=192 Identities=14% Similarity=0.200 Sum_probs=134.1
Q ss_pred CCCCCCCCcccCcHHHHHHHHHHHHhhcChhHHHhcCCCCCceeEecCCCCCChHHHHHHHHHHcCCCE-----------
Q 035561 448 KNPPIPLKDFASVESMREEINEVVAFLQNPSAFQEMGARAPRGVLIVGERGTGKTSLALAIAAEARVPV----------- 516 (979)
Q Consensus 448 ~~~~~~f~DIvGleevke~L~eiV~~L~~p~~f~~lG~~~P~gVLL~GPPGTGKTtLArAlA~elg~~~----------- 516 (979)
++++.+|+||+|++.+++.|+..+.. .+.|..+||+||+|||||++|+++|+.+++.-
T Consensus 9 KyRP~~f~dviGQe~vv~~L~~~l~~-----------~rl~ha~Lf~Gp~GvGKTtlAr~lAk~LnC~~~~~~~~~~~~p 77 (618)
T PRK14951 9 KYRPRSFSEMVGQEHVVQALTNALTQ-----------QRLHHAYLFTGTRGVGKTTVSRILAKSLNCQGPDGQGGITATP 77 (618)
T ss_pred HHCCCCHHHhcCcHHHHHHHHHHHHc-----------CCCCeEEEEECCCCCCHHHHHHHHHHHhcCCCcccccCCCCCC
Confidence 56788999999999999998876532 24456789999999999999999999987520
Q ss_pred -E-Eeechhhhhhhh---------cccchhhHHHHHHHHHhc----CCeEEEEcCccccccccccccCCCchhhHHHHHH
Q 035561 517 -V-NVEAQELEAGLW---------VGQSASNVRELFQTARDL----APVIIFVEDFDLFAGVRGQFIHTKQQDHESFINQ 581 (979)
Q Consensus 517 -i-~Is~sdL~~~~~---------vG~~~~~Ir~lF~~A~~~----aP~ILfIDEIDaL~~~r~~~~~~~~~~~~~iln~ 581 (979)
- .-+|..+..+.+ ...+...+|++.+.+... ...|++|||+|.|. ....|.
T Consensus 78 Cg~C~~C~~i~~g~h~D~~eldaas~~~Vd~iReli~~~~~~p~~g~~KV~IIDEvh~Ls--------------~~a~Na 143 (618)
T PRK14951 78 CGVCQACRDIDSGRFVDYTELDAASNRGVDEVQQLLEQAVYKPVQGRFKVFMIDEVHMLT--------------NTAFNA 143 (618)
T ss_pred CCccHHHHHHHcCCCCceeecCcccccCHHHHHHHHHHHHhCcccCCceEEEEEChhhCC--------------HHHHHH
Confidence 0 001111111110 112334677777766431 23699999999883 234677
Q ss_pred HHhhhcccccCCeEEEEecccchhhchhhhhcCCceeeEeccCCCCHHHHHHHHHHHHHhccchhhhhhhhHHHHHHHcC
Q 035561 582 LLVELDGFEKQDGVVLMATTRNIKQIDEALQRPGRMDRIFNLQKPTQSEREKILRIAAQETMDEELIDLVDWRKVAEKTA 661 (979)
Q Consensus 582 LL~~LDg~~~~~~ViVIATTN~pe~LDpALlRpgRFd~~I~~~~Pd~eeR~~IL~~~l~~~~~~~l~~dvdL~~LA~~T~ 661 (979)
||+.|+.. .+.+.+|.+|+.+..+.+.+++ |+ ..++|..++.++....|+..+++.. ...++..+..|++.+.
T Consensus 144 LLKtLEEP--P~~~~fIL~Ttd~~kil~TIlS--Rc-~~~~f~~Ls~eei~~~L~~i~~~eg--i~ie~~AL~~La~~s~ 216 (618)
T PRK14951 144 MLKTLEEP--PEYLKFVLATTDPQKVPVTVLS--RC-LQFNLRPMAPETVLEHLTQVLAAEN--VPAEPQALRLLARAAR 216 (618)
T ss_pred HHHhcccC--CCCeEEEEEECCchhhhHHHHH--hc-eeeecCCCCHHHHHHHHHHHHHHcC--CCCCHHHHHHHHHHcC
Confidence 88887753 3455666666778888888998 54 7899999999999999998887642 2234556788898888
Q ss_pred CCCHHHHHHHH
Q 035561 662 LLRPIELKLVP 672 (979)
Q Consensus 662 GfsgaDL~~Lv 672 (979)
| +..++.+++
T Consensus 217 G-slR~al~lL 226 (618)
T PRK14951 217 G-SMRDALSLT 226 (618)
T ss_pred C-CHHHHHHHH
Confidence 7 555665554
No 93
>COG0466 Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones]
Probab=99.46 E-value=3e-13 Score=159.94 Aligned_cols=166 Identities=23% Similarity=0.312 Sum_probs=128.3
Q ss_pred CcccCcHHHHHHHHHHHHhhcChhHHHhcCCCCCceeEecCCCCCChHHHHHHHHHHcCCCEEEeechhhhhh-------
Q 035561 455 KDFASVESMREEINEVVAFLQNPSAFQEMGARAPRGVLIVGERGTGKTSLALAIAAEARVPVVNVEAQELEAG------- 527 (979)
Q Consensus 455 ~DIvGleevke~L~eiV~~L~~p~~f~~lG~~~P~gVLL~GPPGTGKTtLArAlA~elg~~~i~Is~sdL~~~------- 527 (979)
.|--|++++|+.+-|++.-.+... . .+ ..-++|+||||+|||+|+++||+.+|..|+.++...+-.+
T Consensus 323 ~dHYGLekVKeRIlEyLAV~~l~~---~--~k-GpILcLVGPPGVGKTSLgkSIA~al~RkfvR~sLGGvrDEAEIRGHR 396 (782)
T COG0466 323 KDHYGLEKVKERILEYLAVQKLTK---K--LK-GPILCLVGPPGVGKTSLGKSIAKALGRKFVRISLGGVRDEAEIRGHR 396 (782)
T ss_pred ccccCchhHHHHHHHHHHHHHHhc---c--CC-CcEEEEECCCCCCchhHHHHHHHHhCCCEEEEecCccccHHHhcccc
Confidence 378899999999988776532221 1 11 1237899999999999999999999999999987654322
Q ss_pred -hhcccchhhHHHHHHHHHhcCCeEEEEcCccccccccccccCCCchhhHHHHHHHHhhhcc-----cc--------cCC
Q 035561 528 -LWVGQSASNVRELFQTARDLAPVIIFVEDFDLFAGVRGQFIHTKQQDHESFINQLLVELDG-----FE--------KQD 593 (979)
Q Consensus 528 -~~vG~~~~~Ir~lF~~A~~~aP~ILfIDEIDaL~~~r~~~~~~~~~~~~~iln~LL~~LDg-----~~--------~~~ 593 (979)
.|+|..-.++-+-...|....| +++|||||.++.+-. ..=.+.||..||. |. .-+
T Consensus 397 RTYIGamPGrIiQ~mkka~~~NP-v~LLDEIDKm~ss~r----------GDPaSALLEVLDPEQN~~F~DhYLev~yDLS 465 (782)
T COG0466 397 RTYIGAMPGKIIQGMKKAGVKNP-VFLLDEIDKMGSSFR----------GDPASALLEVLDPEQNNTFSDHYLEVPYDLS 465 (782)
T ss_pred ccccccCChHHHHHHHHhCCcCC-eEEeechhhccCCCC----------CChHHHHHhhcCHhhcCchhhccccCccchh
Confidence 2889999999999999988776 667999999964321 1112356666653 11 125
Q ss_pred eEEEEecccchhhchhhhhcCCceeeEeccCCCCHHHHHHHHHHHHH
Q 035561 594 GVVLMATTRNIKQIDEALQRPGRMDRIFNLQKPTQSEREKILRIAAQ 640 (979)
Q Consensus 594 ~ViVIATTN~pe~LDpALlRpgRFd~~I~~~~Pd~eeR~~IL~~~l~ 640 (979)
.|++|||+|..+.||.+|+. |+ .+|++.-++.++..+|.+.|+=
T Consensus 466 ~VmFiaTANsl~tIP~PLlD--RM-EiI~lsgYt~~EKl~IAk~~Li 509 (782)
T COG0466 466 KVMFIATANSLDTIPAPLLD--RM-EVIRLSGYTEDEKLEIAKRHLI 509 (782)
T ss_pred heEEEeecCccccCChHHhc--ce-eeeeecCCChHHHHHHHHHhcc
Confidence 69999999999999999999 88 5899999999999999999863
No 94
>PRK14952 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.46 E-value=1.8e-12 Score=155.15 Aligned_cols=194 Identities=16% Similarity=0.177 Sum_probs=131.1
Q ss_pred CCCCCCCCcccCcHHHHHHHHHHHHhhcChhHHHhcCCCCCceeEecCCCCCChHHHHHHHHHHcCCC-------EEEe-
Q 035561 448 KNPPIPLKDFASVESMREEINEVVAFLQNPSAFQEMGARAPRGVLIVGERGTGKTSLALAIAAEARVP-------VVNV- 519 (979)
Q Consensus 448 ~~~~~~f~DIvGleevke~L~eiV~~L~~p~~f~~lG~~~P~gVLL~GPPGTGKTtLArAlA~elg~~-------~i~I- 519 (979)
++++.+|+||+|++.+++.|+..+.. .+.|..+||+||+|||||++|+++|+.+++. .-.+
T Consensus 6 kyRP~~f~eivGq~~i~~~L~~~i~~-----------~r~~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pCg~C~ 74 (584)
T PRK14952 6 KYRPATFAEVVGQEHVTEPLSSALDA-----------GRINHAYLFSGPRGCGKTSSARILARSLNCAQGPTATPCGVCE 74 (584)
T ss_pred HhCCCcHHHhcCcHHHHHHHHHHHHc-----------CCCCeEEEEECCCCCCHHHHHHHHHHHhccccCCCCCcccccH
Confidence 56788999999999999998866531 2455668999999999999999999988642 1000
Q ss_pred echhhhhh------h--hcc---cchhhHHHHHHHHHh----cCCeEEEEcCccccccccccccCCCchhhHHHHHHHHh
Q 035561 520 EAQELEAG------L--WVG---QSASNVRELFQTARD----LAPVIIFVEDFDLFAGVRGQFIHTKQQDHESFINQLLV 584 (979)
Q Consensus 520 s~sdL~~~------~--~vG---~~~~~Ir~lF~~A~~----~aP~ILfIDEIDaL~~~r~~~~~~~~~~~~~iln~LL~ 584 (979)
+|-.+..+ . ..+ .+...+|++-+.+.. ....|++|||+|.+. ....|.||+
T Consensus 75 ~C~~i~~~~~~~~dvieidaas~~gvd~iRel~~~~~~~P~~~~~KVvIIDEah~Lt--------------~~A~NALLK 140 (584)
T PRK14952 75 SCVALAPNGPGSIDVVELDAASHGGVDDTRELRDRAFYAPAQSRYRIFIVDEAHMVT--------------TAGFNALLK 140 (584)
T ss_pred HHHHhhcccCCCceEEEeccccccCHHHHHHHHHHHHhhhhcCCceEEEEECCCcCC--------------HHHHHHHHH
Confidence 11111000 0 001 134456666555532 234699999999872 236778888
Q ss_pred hhcccccCCeEEEEecccchhhchhhhhcCCceeeEeccCCCCHHHHHHHHHHHHHhccchhhhhhhhHHHHHHHcCCCC
Q 035561 585 ELDGFEKQDGVVLMATTRNIKQIDEALQRPGRMDRIFNLQKPTQSEREKILRIAAQETMDEELIDLVDWRKVAEKTALLR 664 (979)
Q Consensus 585 ~LDg~~~~~~ViVIATTN~pe~LDpALlRpgRFd~~I~~~~Pd~eeR~~IL~~~l~~~~~~~l~~dvdL~~LA~~T~Gfs 664 (979)
.|+.. ...+++|.+|+.++.|.++|++ |. ..+.|..++.++..+.++..++... ...++..+..+++.+.| +
T Consensus 141 ~LEEp--p~~~~fIL~tte~~kll~TI~S--Rc-~~~~F~~l~~~~i~~~L~~i~~~eg--i~i~~~al~~Ia~~s~G-d 212 (584)
T PRK14952 141 IVEEP--PEHLIFIFATTEPEKVLPTIRS--RT-HHYPFRLLPPRTMRALIARICEQEG--VVVDDAVYPLVIRAGGG-S 212 (584)
T ss_pred HHhcC--CCCeEEEEEeCChHhhHHHHHH--hc-eEEEeeCCCHHHHHHHHHHHHHHcC--CCCCHHHHHHHHHHcCC-C
Confidence 88753 3456666677888999999998 53 6899999999999999998887642 22344456677776665 4
Q ss_pred HHHHHHHHHH
Q 035561 665 PIELKLVPVA 674 (979)
Q Consensus 665 gaDL~~Lv~a 674 (979)
..++.++...
T Consensus 213 lR~aln~Ldq 222 (584)
T PRK14952 213 PRDTLSVLDQ 222 (584)
T ss_pred HHHHHHHHHH
Confidence 4444444433
No 95
>TIGR00390 hslU ATP-dependent protease HslVU, ATPase subunit. This model represents the ATPase subunit of HslVU, while the proteasome-related peptidase subunit is HslV. Residues 54-61 of the model contain a P-loop ATP-binding motif. Cys-287 of E. coli (position 308 in the seed alignment), studied in PubMed:98389714, is Ser in other members of the seed alignment.
Probab=99.46 E-value=7.6e-13 Score=151.16 Aligned_cols=177 Identities=24% Similarity=0.339 Sum_probs=129.6
Q ss_pred cccCcHHHHHHHHHHHHh-hcChhHHHhc-CCCCCceeEecCCCCCChHHHHHHHHHHcCCCEEEeechhhhhhhhcc-c
Q 035561 456 DFASVESMREEINEVVAF-LQNPSAFQEM-GARAPRGVLIVGERGTGKTSLALAIAAEARVPVVNVEAQELEAGLWVG-Q 532 (979)
Q Consensus 456 DIvGleevke~L~eiV~~-L~~p~~f~~l-G~~~P~gVLL~GPPGTGKTtLArAlA~elg~~~i~Is~sdL~~~~~vG-~ 532 (979)
-|+|++++|+.+...+.. .+.......+ +-..|+++||+||||||||++|+++|+.++.||+.++++.+....|+| .
T Consensus 13 ~IiGQ~eAkk~lsvAl~n~~~r~~~~~~~~~e~~p~~ILLiGppG~GKT~lAraLA~~l~~~fi~vdat~~~e~g~vG~d 92 (441)
T TIGR00390 13 YIIGQDNAKKSVAIALRNRYRRSQLNEELKDEVTPKNILMIGPTGVGKTEIARRLAKLANAPFIKVEATKFTEVGYVGRD 92 (441)
T ss_pred hccCHHHHHHHHHHHHHhhhhhhccccccccccCCceEEEECCCCCCHHHHHHHHHHHhCCeEEEeecceeecCCcccCC
Confidence 489999999999755432 1111111111 123578999999999999999999999999999999999886445777 5
Q ss_pred chhhHHHHHHHHH-------------------------------------------------------------------
Q 035561 533 SASNVRELFQTAR------------------------------------------------------------------- 545 (979)
Q Consensus 533 ~~~~Ir~lF~~A~------------------------------------------------------------------- 545 (979)
.++.++.+|+.|.
T Consensus 93 vE~i~r~l~e~A~~~i~~d~i~~~r~~a~~~ae~riv~~Ll~~~~~~~~~~~~~~~~~~~r~~~~~~l~~g~ldd~~iei 172 (441)
T TIGR00390 93 VESMVRDLTDAAVKLVKEEAIEKVRDRAEELAEERIVDVLLPPAKNQWGQTEQQQEPESAREAFRKKLREGELDDKEIEI 172 (441)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhcCCccccccccccccchHHHHHHHHHHHhcCCccCcEEEE
Confidence 6677777777760
Q ss_pred ------------------------------------------------------------------------hcCCeEEE
Q 035561 546 ------------------------------------------------------------------------DLAPVIIF 553 (979)
Q Consensus 546 ------------------------------------------------------------------------~~aP~ILf 553 (979)
..+.+|+|
T Consensus 173 ~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ea~~~l~~~e~~~lid~~~v~~~a~~~~e~~GIVf 252 (441)
T TIGR00390 173 DVSAKMPSGIEIMAPPGMEEMTMQLQSLFQNLGGQKKKKRKLKIKDAKKALIAEEAAKLVDPEEIKQEAIDAVEQSGIIF 252 (441)
T ss_pred eecCCCCCccccCCCcchhHHHhhHHHHHHhhcCCCCceEEeEHHHHHHHHHHHHHHhccChHHHHHHHHHHHHcCCEEE
Confidence 01347999
Q ss_pred EcCccccccccccccCCCchhhHHHHHHHHhhhccc--------ccCCeEEEEeccc----chhhchhhhhcCCceeeEe
Q 035561 554 VEDFDLFAGVRGQFIHTKQQDHESFINQLLVELDGF--------EKQDGVVLMATTR----NIKQIDEALQRPGRMDRIF 621 (979)
Q Consensus 554 IDEIDaL~~~r~~~~~~~~~~~~~iln~LL~~LDg~--------~~~~~ViVIATTN----~pe~LDpALlRpgRFd~~I 621 (979)
|||||.|+.+.+. .+.+-..+-+-+.||..++|- -+++++++||+.. .|++|=|.|.. ||+..+
T Consensus 253 iDEiDKIa~~~~~--~~~DvS~eGVQ~~LLkilEGt~v~~k~~~v~T~~ILFI~~GAF~~~kp~DlIPEl~G--R~Pi~v 328 (441)
T TIGR00390 253 IDEIDKIAKKGES--SGADVSREGVQRDLLPIVEGSTVNTKYGMVKTDHILFIAAGAFQLAKPSDLIPELQG--RFPIRV 328 (441)
T ss_pred EEchhhhcccCCC--CCCCCCccchhccccccccCceeeecceeEECCceeEEecCCcCCCChhhccHHHhC--ccceEE
Confidence 9999999875421 122223344666888888873 2345677777654 47778888877 999999
Q ss_pred ccCCCCHHHHHHHHH
Q 035561 622 NLQKPTQSEREKILR 636 (979)
Q Consensus 622 ~~~~Pd~eeR~~IL~ 636 (979)
.+.+++.++...||.
T Consensus 329 ~L~~L~~edL~rILt 343 (441)
T TIGR00390 329 ELQALTTDDFERILT 343 (441)
T ss_pred ECCCCCHHHHHHHhc
Confidence 999999999999994
No 96
>PRK07764 DNA polymerase III subunits gamma and tau; Validated
Probab=99.46 E-value=1.3e-12 Score=161.57 Aligned_cols=194 Identities=15% Similarity=0.124 Sum_probs=131.7
Q ss_pred CCCCCCCCcccCcHHHHHHHHHHHHhhcChhHHHhcCCCCCceeEecCCCCCChHHHHHHHHHHcCCCE-------EEe-
Q 035561 448 KNPPIPLKDFASVESMREEINEVVAFLQNPSAFQEMGARAPRGVLIVGERGTGKTSLALAIAAEARVPV-------VNV- 519 (979)
Q Consensus 448 ~~~~~~f~DIvGleevke~L~eiV~~L~~p~~f~~lG~~~P~gVLL~GPPGTGKTtLArAlA~elg~~~-------i~I- 519 (979)
++++.+|+||+|++.+++.|+..+.. .+.+..+||+||+|||||++|+.+|+.+++.- -.+
T Consensus 8 KyRP~~f~eiiGqe~v~~~L~~~i~~-----------~ri~Ha~Lf~Gp~G~GKTt~A~~lAr~L~C~~~~~~~pCg~C~ 76 (824)
T PRK07764 8 RYRPATFAEVIGQEHVTEPLSTALDS-----------GRINHAYLFSGPRGCGKTSSARILARSLNCVEGPTSTPCGECD 76 (824)
T ss_pred HhCCCCHHHhcCcHHHHHHHHHHHHh-----------CCCCceEEEECCCCCCHHHHHHHHHHHhCcccCCCCCCCcccH
Confidence 67889999999999999998866531 23455689999999999999999999997521 010
Q ss_pred echhhhhh--------hhcc---cchhhHHHHHHHHH----hcCCeEEEEcCccccccccccccCCCchhhHHHHHHHHh
Q 035561 520 EAQELEAG--------LWVG---QSASNVRELFQTAR----DLAPVIIFVEDFDLFAGVRGQFIHTKQQDHESFINQLLV 584 (979)
Q Consensus 520 s~sdL~~~--------~~vG---~~~~~Ir~lF~~A~----~~aP~ILfIDEIDaL~~~r~~~~~~~~~~~~~iln~LL~ 584 (979)
+|-.+..+ .+.+ .+...+|++-+.+. .....|+||||+|.|. ....|.||+
T Consensus 77 sC~~~~~g~~~~~dv~eidaas~~~Vd~iR~l~~~~~~~p~~~~~KV~IIDEad~lt--------------~~a~NaLLK 142 (824)
T PRK07764 77 SCVALAPGGPGSLDVTEIDAASHGGVDDARELRERAFFAPAESRYKIFIIDEAHMVT--------------PQGFNALLK 142 (824)
T ss_pred HHHHHHcCCCCCCcEEEecccccCCHHHHHHHHHHHHhchhcCCceEEEEechhhcC--------------HHHHHHHHH
Confidence 11111100 0001 12344565544432 2345799999999882 356778888
Q ss_pred hhcccccCCeEEEEecccchhhchhhhhcCCceeeEeccCCCCHHHHHHHHHHHHHhccchhhhhhhhHHHHHHHcCCCC
Q 035561 585 ELDGFEKQDGVVLMATTRNIKQIDEALQRPGRMDRIFNLQKPTQSEREKILRIAAQETMDEELIDLVDWRKVAEKTALLR 664 (979)
Q Consensus 585 ~LDg~~~~~~ViVIATTN~pe~LDpALlRpgRFd~~I~~~~Pd~eeR~~IL~~~l~~~~~~~l~~dvdL~~LA~~T~Gfs 664 (979)
.|+... ..+++|.+|+.++.|.+.|++ |. ..+.|..++.++..++|+..+++.. ...++..+..|++.+.| +
T Consensus 143 ~LEEpP--~~~~fIl~tt~~~kLl~TIrS--Rc-~~v~F~~l~~~~l~~~L~~il~~EG--v~id~eal~lLa~~sgG-d 214 (824)
T PRK07764 143 IVEEPP--EHLKFIFATTEPDKVIGTIRS--RT-HHYPFRLVPPEVMRGYLERICAQEG--VPVEPGVLPLVIRAGGG-S 214 (824)
T ss_pred HHhCCC--CCeEEEEEeCChhhhhHHHHh--he-eEEEeeCCCHHHHHHHHHHHHHHcC--CCCCHHHHHHHHHHcCC-C
Confidence 888643 355666667788889999998 44 6889999999999999998887642 22345556778888777 4
Q ss_pred HHHHHHHHHH
Q 035561 665 PIELKLVPVA 674 (979)
Q Consensus 665 gaDL~~Lv~a 674 (979)
..++.+++..
T Consensus 215 lR~Al~eLEK 224 (824)
T PRK07764 215 VRDSLSVLDQ 224 (824)
T ss_pred HHHHHHHHHH
Confidence 4555544433
No 97
>PRK14957 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.45 E-value=2.3e-12 Score=153.09 Aligned_cols=184 Identities=15% Similarity=0.210 Sum_probs=128.8
Q ss_pred CCCCCCCCcccCcHHHHHHHHHHHHhhcChhHHHhcCCCCCceeEecCCCCCChHHHHHHHHHHcCC-------------
Q 035561 448 KNPPIPLKDFASVESMREEINEVVAFLQNPSAFQEMGARAPRGVLIVGERGTGKTSLALAIAAEARV------------- 514 (979)
Q Consensus 448 ~~~~~~f~DIvGleevke~L~eiV~~L~~p~~f~~lG~~~P~gVLL~GPPGTGKTtLArAlA~elg~------------- 514 (979)
+.+|.+|+|++|++.+++.|...+.. .+.|..+||+||||||||++|+++|+.+++
T Consensus 9 KyRP~~f~diiGq~~~v~~L~~~i~~-----------~rl~ha~Lf~Gp~GvGKTTlAr~lAk~L~c~~~~~~~pCg~C~ 77 (546)
T PRK14957 9 KYRPQSFAEVAGQQHALNSLVHALET-----------QKVHHAYLFTGTRGVGKTTLGRLLAKCLNCKTGVTAEPCNKCE 77 (546)
T ss_pred HHCcCcHHHhcCcHHHHHHHHHHHHc-----------CCCCeEEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCcccH
Confidence 56778999999999999988765531 234567999999999999999999998864
Q ss_pred -----------CEEEeechhhhhhhhcccchhhHHHHHHHHHh----cCCeEEEEcCccccccccccccCCCchhhHHHH
Q 035561 515 -----------PVVNVEAQELEAGLWVGQSASNVRELFQTARD----LAPVIIFVEDFDLFAGVRGQFIHTKQQDHESFI 579 (979)
Q Consensus 515 -----------~~i~Is~sdL~~~~~vG~~~~~Ir~lF~~A~~----~aP~ILfIDEIDaL~~~r~~~~~~~~~~~~~il 579 (979)
.++.+++.. ..+...++++.+.+.. ....|++|||+|.+. ....
T Consensus 78 sC~~i~~~~~~dlieidaas-------~~gvd~ir~ii~~~~~~p~~g~~kViIIDEa~~ls--------------~~a~ 136 (546)
T PRK14957 78 NCVAINNNSFIDLIEIDAAS-------RTGVEETKEILDNIQYMPSQGRYKVYLIDEVHMLS--------------KQSF 136 (546)
T ss_pred HHHHHhcCCCCceEEeeccc-------ccCHHHHHHHHHHHHhhhhcCCcEEEEEechhhcc--------------HHHH
Confidence 122222110 1123345666665542 235799999999872 3456
Q ss_pred HHHHhhhcccccCCeEEEEecccchhhchhhhhcCCceeeEeccCCCCHHHHHHHHHHHHHhccchhhhhhhhHHHHHHH
Q 035561 580 NQLLVELDGFEKQDGVVLMATTRNIKQIDEALQRPGRMDRIFNLQKPTQSEREKILRIAAQETMDEELIDLVDWRKVAEK 659 (979)
Q Consensus 580 n~LL~~LDg~~~~~~ViVIATTN~pe~LDpALlRpgRFd~~I~~~~Pd~eeR~~IL~~~l~~~~~~~l~~dvdL~~LA~~ 659 (979)
+.||..|+.. .+.+++|.+|+.+..+.+.+++ |. ..++|.+++.++....++..++... ...+...+..+++.
T Consensus 137 naLLK~LEep--p~~v~fIL~Ttd~~kil~tI~S--Rc-~~~~f~~Ls~~eI~~~L~~il~~eg--i~~e~~Al~~Ia~~ 209 (546)
T PRK14957 137 NALLKTLEEP--PEYVKFILATTDYHKIPVTILS--RC-IQLHLKHISQADIKDQLKIILAKEN--INSDEQSLEYIAYH 209 (546)
T ss_pred HHHHHHHhcC--CCCceEEEEECChhhhhhhHHH--he-eeEEeCCCCHHHHHHHHHHHHHHcC--CCCCHHHHHHHHHH
Confidence 7888888753 3445566666678888888988 55 7899999999999999998877642 23455567788888
Q ss_pred cCCCCHHHHHHH
Q 035561 660 TALLRPIELKLV 671 (979)
Q Consensus 660 T~GfsgaDL~~L 671 (979)
+.| +..++.++
T Consensus 210 s~G-dlR~alnl 220 (546)
T PRK14957 210 AKG-SLRDALSL 220 (546)
T ss_pred cCC-CHHHHHHH
Confidence 876 33343333
No 98
>PRK05896 DNA polymerase III subunits gamma and tau; Validated
Probab=99.44 E-value=2.1e-12 Score=153.78 Aligned_cols=187 Identities=19% Similarity=0.264 Sum_probs=132.3
Q ss_pred CCCCCCCCcccCcHHHHHHHHHHHHhhcChhHHHhcCCCCCceeEecCCCCCChHHHHHHHHHHcCCC------------
Q 035561 448 KNPPIPLKDFASVESMREEINEVVAFLQNPSAFQEMGARAPRGVLIVGERGTGKTSLALAIAAEARVP------------ 515 (979)
Q Consensus 448 ~~~~~~f~DIvGleevke~L~eiV~~L~~p~~f~~lG~~~P~gVLL~GPPGTGKTtLArAlA~elg~~------------ 515 (979)
+++|.+|++++|++.+++.|...+. ..+.|.++||+||||||||++|+++|+.+.+.
T Consensus 9 KyRP~~F~dIIGQe~iv~~L~~aI~-----------~~rl~hA~Lf~GP~GvGKTTlA~~lAk~L~C~~~~~~~~Cg~C~ 77 (605)
T PRK05896 9 KYRPHNFKQIIGQELIKKILVNAIL-----------NNKLTHAYIFSGPRGIGKTSIAKIFAKAINCLNPKDGDCCNSCS 77 (605)
T ss_pred HhCCCCHHHhcCcHHHHHHHHHHHH-----------cCCCCceEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCcccH
Confidence 5778999999999999998876542 22456789999999999999999999988531
Q ss_pred ------------EEEeechhhhhhhhcccchhhHHHHHHHHHhc----CCeEEEEcCccccccccccccCCCchhhHHHH
Q 035561 516 ------------VVNVEAQELEAGLWVGQSASNVRELFQTARDL----APVIIFVEDFDLFAGVRGQFIHTKQQDHESFI 579 (979)
Q Consensus 516 ------------~i~Is~sdL~~~~~vG~~~~~Ir~lF~~A~~~----aP~ILfIDEIDaL~~~r~~~~~~~~~~~~~il 579 (979)
++.++++. ..+...+|.+.+.+... ...|++|||+|.+. ....
T Consensus 78 sCr~i~~~~h~DiieIdaas-------~igVd~IReIi~~~~~~P~~~~~KVIIIDEad~Lt--------------~~A~ 136 (605)
T PRK05896 78 VCESINTNQSVDIVELDAAS-------NNGVDEIRNIIDNINYLPTTFKYKVYIIDEAHMLS--------------TSAW 136 (605)
T ss_pred HHHHHHcCCCCceEEecccc-------ccCHHHHHHHHHHHHhchhhCCcEEEEEechHhCC--------------HHHH
Confidence 12222111 12344577777766542 23699999999872 2245
Q ss_pred HHHHhhhcccccCCeEEEEecccchhhchhhhhcCCceeeEeccCCCCHHHHHHHHHHHHHhccchhhhhhhhHHHHHHH
Q 035561 580 NQLLVELDGFEKQDGVVLMATTRNIKQIDEALQRPGRMDRIFNLQKPTQSEREKILRIAAQETMDEELIDLVDWRKVAEK 659 (979)
Q Consensus 580 n~LL~~LDg~~~~~~ViVIATTN~pe~LDpALlRpgRFd~~I~~~~Pd~eeR~~IL~~~l~~~~~~~l~~dvdL~~LA~~ 659 (979)
+.|+..|+.. ...+++|.+|+.++.|.+++++ |+ ..++|++|+.++....++..+.... ...++..+..+++.
T Consensus 137 NaLLKtLEEP--p~~tvfIL~Tt~~~KLl~TI~S--Rc-q~ieF~~Ls~~eL~~~L~~il~keg--i~Is~eal~~La~l 209 (605)
T PRK05896 137 NALLKTLEEP--PKHVVFIFATTEFQKIPLTIIS--RC-QRYNFKKLNNSELQELLKSIAKKEK--IKIEDNAIDKIADL 209 (605)
T ss_pred HHHHHHHHhC--CCcEEEEEECCChHhhhHHHHh--hh-hhcccCCCCHHHHHHHHHHHHHHcC--CCCCHHHHHHHHHH
Confidence 6788877753 3456666677788999999998 65 5899999999999999998887542 12344457788888
Q ss_pred cCCCCHHHHHHHHHH
Q 035561 660 TALLRPIELKLVPVA 674 (979)
Q Consensus 660 T~GfsgaDL~~Lv~a 674 (979)
+.| +.+++.++...
T Consensus 210 S~G-dlR~AlnlLek 223 (605)
T PRK05896 210 ADG-SLRDGLSILDQ 223 (605)
T ss_pred cCC-cHHHHHHHHHH
Confidence 877 44444444433
No 99
>PRK05201 hslU ATP-dependent protease ATP-binding subunit HslU; Provisional
Probab=99.44 E-value=6.6e-13 Score=151.74 Aligned_cols=177 Identities=23% Similarity=0.341 Sum_probs=130.4
Q ss_pred cccCcHHHHHHHHHHHHh-hcChhHHHhcC-CCCCceeEecCCCCCChHHHHHHHHHHcCCCEEEeechhhhhhhhcc-c
Q 035561 456 DFASVESMREEINEVVAF-LQNPSAFQEMG-ARAPRGVLIVGERGTGKTSLALAIAAEARVPVVNVEAQELEAGLWVG-Q 532 (979)
Q Consensus 456 DIvGleevke~L~eiV~~-L~~p~~f~~lG-~~~P~gVLL~GPPGTGKTtLArAlA~elg~~~i~Is~sdL~~~~~vG-~ 532 (979)
.|+|++++|+.+...+.. .+......... -..|.++||+||||||||++|+++|+.++.||+.++++.+....|+| .
T Consensus 16 ~IiGQe~AkkalavAl~~~~~r~~l~~~~~~e~~~~~ILliGp~G~GKT~LAr~LAk~l~~~fi~vD~t~f~e~GyvG~d 95 (443)
T PRK05201 16 YIIGQDDAKRAVAIALRNRWRRMQLPEELRDEVTPKNILMIGPTGVGKTEIARRLAKLANAPFIKVEATKFTEVGYVGRD 95 (443)
T ss_pred ccCCHHHHHHHHHHHHHHHHHHhcCCcccccccCCceEEEECCCCCCHHHHHHHHHHHhCChheeecchhhccCCcccCC
Confidence 499999999999766532 11111000011 11368999999999999999999999999999999999987556888 5
Q ss_pred chhhHHHHHHHHH-------------------------------------------------------------------
Q 035561 533 SASNVRELFQTAR------------------------------------------------------------------- 545 (979)
Q Consensus 533 ~~~~Ir~lF~~A~------------------------------------------------------------------- 545 (979)
.++.++.+|+.|.
T Consensus 96 ~e~~ir~L~~~A~~~~~~~~~~~~~~~a~~~~e~ri~~~l~~~~~~~~~~~~~~~~~~~~r~~~~~~l~~g~ldd~~iei 175 (443)
T PRK05201 96 VESIIRDLVEIAVKMVREEKREKVREKAEEAAEERILDALLPPAKNNWGEEEEKEEISATRQKFRKKLREGELDDKEIEI 175 (443)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhCCCccCCccccccchhhhHHHHHHHHHHHcCCcCCcEEEE
Confidence 5677888877771
Q ss_pred ---h--------------------------------------------------------------------cCCeEEEE
Q 035561 546 ---D--------------------------------------------------------------------LAPVIIFV 554 (979)
Q Consensus 546 ---~--------------------------------------------------------------------~aP~ILfI 554 (979)
. ..-+|+||
T Consensus 176 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~eA~~~l~~~e~~~lid~~~v~~~ai~~ae~~GIVfi 255 (443)
T PRK05201 176 EVAEAAPMMEIMGPPGMEEMTIQLQDMFGNLGPKKKKKRKLKVKEARKILIEEEAAKLIDMEEIKQEAIERVEQNGIVFI 255 (443)
T ss_pred EecCCCCcccCCCCcchhHHHHHHHHHHHhhCCCCCceEEeEHHHHHHHHHHHHHHhccChHHHHHHHHHHHHcCCEEEE
Confidence 0 13479999
Q ss_pred cCccccccccccccCCCchhhHHHHHHHHhhhccc--------ccCCeEEEEeccc----chhhchhhhhcCCceeeEec
Q 035561 555 EDFDLFAGVRGQFIHTKQQDHESFINQLLVELDGF--------EKQDGVVLMATTR----NIKQIDEALQRPGRMDRIFN 622 (979)
Q Consensus 555 DEIDaL~~~r~~~~~~~~~~~~~iln~LL~~LDg~--------~~~~~ViVIATTN----~pe~LDpALlRpgRFd~~I~ 622 (979)
||||.|+.+.+. ++.+-..+-+-..||..++|- -+++++++||+.. .|++|-|.|.. ||+.++.
T Consensus 256 DEiDKIa~~~~~--~~~DvS~eGVQ~~LLki~EG~~v~~k~~~i~T~~ILFI~~GAF~~~kp~DlIPEl~G--R~Pi~v~ 331 (443)
T PRK05201 256 DEIDKIAARGGS--SGPDVSREGVQRDLLPLVEGSTVSTKYGMVKTDHILFIASGAFHVSKPSDLIPELQG--RFPIRVE 331 (443)
T ss_pred EcchhhcccCCC--CCCCCCccchhcccccccccceeeecceeEECCceeEEecCCcCCCChhhccHHHhC--ccceEEE
Confidence 999999876432 122223345667889888873 2346677777643 37778889987 9999999
Q ss_pred cCCCCHHHHHHHHH
Q 035561 623 LQKPTQSEREKILR 636 (979)
Q Consensus 623 ~~~Pd~eeR~~IL~ 636 (979)
+..++.++...||.
T Consensus 332 L~~L~~~dL~~ILt 345 (443)
T PRK05201 332 LDALTEEDFVRILT 345 (443)
T ss_pred CCCCCHHHHHHHhc
Confidence 99999999999994
No 100
>PRK14970 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.44 E-value=2.9e-12 Score=145.87 Aligned_cols=192 Identities=16% Similarity=0.202 Sum_probs=129.1
Q ss_pred CCCCCCCCcccCcHHHHHHHHHHHHhhcChhHHHhcCCCCCceeEecCCCCCChHHHHHHHHHHcCCCEEEeechhh---
Q 035561 448 KNPPIPLKDFASVESMREEINEVVAFLQNPSAFQEMGARAPRGVLIVGERGTGKTSLALAIAAEARVPVVNVEAQEL--- 524 (979)
Q Consensus 448 ~~~~~~f~DIvGleevke~L~eiV~~L~~p~~f~~lG~~~P~gVLL~GPPGTGKTtLArAlA~elg~~~i~Is~sdL--- 524 (979)
+++|.+|+|++|++.+++.|...+.. ...|.++|||||||+|||++|+++|+.+..+.....+.++
T Consensus 10 k~rP~~~~~iig~~~~~~~l~~~i~~-----------~~~~~~~L~~G~~G~GKt~~a~~la~~l~~~~~~~~~~~~~~~ 78 (367)
T PRK14970 10 KYRPQTFDDVVGQSHITNTLLNAIEN-----------NHLAQALLFCGPRGVGKTTCARILARKINQPGYDDPNEDFSFN 78 (367)
T ss_pred HHCCCcHHhcCCcHHHHHHHHHHHHc-----------CCCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCcc
Confidence 56789999999999999888765531 2456789999999999999999999988653221111110
Q ss_pred -h-hhhhcccchhhHHHHHHHHHhc----CCeEEEEcCccccccccccccCCCchhhHHHHHHHHhhhcccccCCeEEEE
Q 035561 525 -E-AGLWVGQSASNVRELFQTARDL----APVIIFVEDFDLFAGVRGQFIHTKQQDHESFINQLLVELDGFEKQDGVVLM 598 (979)
Q Consensus 525 -~-~~~~vG~~~~~Ir~lF~~A~~~----aP~ILfIDEIDaL~~~r~~~~~~~~~~~~~iln~LL~~LDg~~~~~~ViVI 598 (979)
. .+.....+...++.+++.+... .+.|++|||+|.+. ....+.|+..++.. ....++|
T Consensus 79 ~~~l~~~~~~~~~~i~~l~~~~~~~p~~~~~kiviIDE~~~l~--------------~~~~~~ll~~le~~--~~~~~~I 142 (367)
T PRK14970 79 IFELDAASNNSVDDIRNLIDQVRIPPQTGKYKIYIIDEVHMLS--------------SAAFNAFLKTLEEP--PAHAIFI 142 (367)
T ss_pred eEEeccccCCCHHHHHHHHHHHhhccccCCcEEEEEeChhhcC--------------HHHHHHHHHHHhCC--CCceEEE
Confidence 0 0000112335677778776532 35799999999773 22356677767652 2334555
Q ss_pred ecccchhhchhhhhcCCceeeEeccCCCCHHHHHHHHHHHHHhccchhhhhhhhHHHHHHHcCCCCHHHHHHHH
Q 035561 599 ATTRNIKQIDEALQRPGRMDRIFNLQKPTQSEREKILRIAAQETMDEELIDLVDWRKVAEKTALLRPIELKLVP 672 (979)
Q Consensus 599 ATTN~pe~LDpALlRpgRFd~~I~~~~Pd~eeR~~IL~~~l~~~~~~~l~~dvdL~~LA~~T~GfsgaDL~~Lv 672 (979)
.+|+.+..+.+++.+ |+ ..+++++|+.++...++...+++.. ...++..+..|+..+.| +.+.+.+.+
T Consensus 143 l~~~~~~kl~~~l~s--r~-~~v~~~~~~~~~l~~~l~~~~~~~g--~~i~~~al~~l~~~~~g-dlr~~~~~l 210 (367)
T PRK14970 143 LATTEKHKIIPTILS--RC-QIFDFKRITIKDIKEHLAGIAVKEG--IKFEDDALHIIAQKADG-ALRDALSIF 210 (367)
T ss_pred EEeCCcccCCHHHHh--cc-eeEecCCccHHHHHHHHHHHHHHcC--CCCCHHHHHHHHHhCCC-CHHHHHHHH
Confidence 556677888889988 54 4789999999999999998877642 12445567788887765 334443333
No 101
>PRK14959 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.44 E-value=2.4e-12 Score=154.08 Aligned_cols=177 Identities=17% Similarity=0.238 Sum_probs=126.6
Q ss_pred CCCCCCCCcccCcHHHHHHHHHHHHhhcChhHHHhcCCCCCceeEecCCCCCChHHHHHHHHHHcCCC------------
Q 035561 448 KNPPIPLKDFASVESMREEINEVVAFLQNPSAFQEMGARAPRGVLIVGERGTGKTSLALAIAAEARVP------------ 515 (979)
Q Consensus 448 ~~~~~~f~DIvGleevke~L~eiV~~L~~p~~f~~lG~~~P~gVLL~GPPGTGKTtLArAlA~elg~~------------ 515 (979)
++++.+|+||+|++.+++.|...+.. -+.+.++||+||||||||++|+++|+.+.+.
T Consensus 9 KyRP~sf~dIiGQe~v~~~L~~ai~~-----------~ri~ha~Lf~GPpG~GKTtiArilAk~L~C~~~~~~~pCg~C~ 77 (624)
T PRK14959 9 RYRPQTFAEVAGQETVKAILSRAAQE-----------NRVAPAYLFSGTRGVGKTTIARIFAKALNCETAPTGEPCNTCE 77 (624)
T ss_pred HhCCCCHHHhcCCHHHHHHHHHHHHc-----------CCCCceEEEECCCCCCHHHHHHHHHHhccccCCCCCCCCcccH
Confidence 56788999999999999999866632 1335679999999999999999999998753
Q ss_pred ------------EEEeechhhhhhhhcccchhhHHHHHHHHH----hcCCeEEEEcCccccccccccccCCCchhhHHHH
Q 035561 516 ------------VVNVEAQELEAGLWVGQSASNVRELFQTAR----DLAPVIIFVEDFDLFAGVRGQFIHTKQQDHESFI 579 (979)
Q Consensus 516 ------------~i~Is~sdL~~~~~vG~~~~~Ir~lF~~A~----~~aP~ILfIDEIDaL~~~r~~~~~~~~~~~~~il 579 (979)
++.+++.. ..+...+|.+.+.+. .....|+||||+|.+. ....
T Consensus 78 sC~~i~~g~hpDv~eId~a~-------~~~Id~iR~L~~~~~~~p~~g~~kVIIIDEad~Lt--------------~~a~ 136 (624)
T PRK14959 78 QCRKVTQGMHVDVVEIDGAS-------NRGIDDAKRLKEAIGYAPMEGRYKVFIIDEAHMLT--------------REAF 136 (624)
T ss_pred HHHHHhcCCCCceEEEeccc-------ccCHHHHHHHHHHHHhhhhcCCceEEEEEChHhCC--------------HHHH
Confidence 23332211 112234454433332 2235799999999883 2346
Q ss_pred HHHHhhhcccccCCeEEEEecccchhhchhhhhcCCceeeEeccCCCCHHHHHHHHHHHHHhccchhhhhhhhHHHHHHH
Q 035561 580 NQLLVELDGFEKQDGVVLMATTRNIKQIDEALQRPGRMDRIFNLQKPTQSEREKILRIAAQETMDEELIDLVDWRKVAEK 659 (979)
Q Consensus 580 n~LL~~LDg~~~~~~ViVIATTN~pe~LDpALlRpgRFd~~I~~~~Pd~eeR~~IL~~~l~~~~~~~l~~dvdL~~LA~~ 659 (979)
+.|+..|+.. ...+++|.+||.++.+.+.+++ |+ ..+.|+.++.++...+|+..+.... ...++..+..|++.
T Consensus 137 naLLk~LEEP--~~~~ifILaTt~~~kll~TI~S--Rc-q~i~F~pLs~~eL~~~L~~il~~eg--i~id~eal~lIA~~ 209 (624)
T PRK14959 137 NALLKTLEEP--PARVTFVLATTEPHKFPVTIVS--RC-QHFTFTRLSEAGLEAHLTKVLGREG--VDYDPAAVRLIARR 209 (624)
T ss_pred HHHHHHhhcc--CCCEEEEEecCChhhhhHHHHh--hh-hccccCCCCHHHHHHHHHHHHHHcC--CCCCHHHHHHHHHH
Confidence 7788888753 3456777778888889989988 65 5789999999999999998776542 12345567788888
Q ss_pred cCCC
Q 035561 660 TALL 663 (979)
Q Consensus 660 T~Gf 663 (979)
+.|-
T Consensus 210 s~Gd 213 (624)
T PRK14959 210 AAGS 213 (624)
T ss_pred cCCC
Confidence 8763
No 102
>PRK14965 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.44 E-value=2.2e-12 Score=155.00 Aligned_cols=184 Identities=20% Similarity=0.259 Sum_probs=132.9
Q ss_pred CCCCCCCCcccCcHHHHHHHHHHHHhhcChhHHHhcCCCCCceeEecCCCCCChHHHHHHHHHHcCCC------------
Q 035561 448 KNPPIPLKDFASVESMREEINEVVAFLQNPSAFQEMGARAPRGVLIVGERGTGKTSLALAIAAEARVP------------ 515 (979)
Q Consensus 448 ~~~~~~f~DIvGleevke~L~eiV~~L~~p~~f~~lG~~~P~gVLL~GPPGTGKTtLArAlA~elg~~------------ 515 (979)
+++|.+|+||+|++.+++.|...+.. .+.|..+|||||+|||||++|+++|+.+++.
T Consensus 9 k~RP~~f~~iiGq~~v~~~L~~~i~~-----------~~~~hayLf~Gp~G~GKtt~A~~lak~l~c~~~~~~~~c~~c~ 77 (576)
T PRK14965 9 KYRPQTFSDLTGQEHVSRTLQNAIDT-----------GRVAHAFLFTGARGVGKTSTARILAKALNCEQGLTAEPCNVCP 77 (576)
T ss_pred HhCCCCHHHccCcHHHHHHHHHHHHc-----------CCCCeEEEEECCCCCCHHHHHHHHHHhhcCCCCCCCCCCCccH
Confidence 56788999999999999999866532 2456778999999999999999999998642
Q ss_pred ------------EEEeechhhhhhhhcccchhhHHHHHHHHHhc----CCeEEEEcCccccccccccccCCCchhhHHHH
Q 035561 516 ------------VVNVEAQELEAGLWVGQSASNVRELFQTARDL----APVIIFVEDFDLFAGVRGQFIHTKQQDHESFI 579 (979)
Q Consensus 516 ------------~i~Is~sdL~~~~~vG~~~~~Ir~lF~~A~~~----aP~ILfIDEIDaL~~~r~~~~~~~~~~~~~il 579 (979)
++.+++.+ ..+...+|++.+.+... ...|++|||+|.+. ....
T Consensus 78 ~c~~i~~g~~~d~~eid~~s-------~~~v~~ir~l~~~~~~~p~~~~~KVvIIdev~~Lt--------------~~a~ 136 (576)
T PRK14965 78 PCVEITEGRSVDVFEIDGAS-------NTGVDDIRELRENVKYLPSRSRYKIFIIDEVHMLS--------------TNAF 136 (576)
T ss_pred HHHHHhcCCCCCeeeeeccC-------ccCHHHHHHHHHHHHhccccCCceEEEEEChhhCC--------------HHHH
Confidence 22222111 12344677777766532 23699999999872 2356
Q ss_pred HHHHhhhcccccCCeEEEEecccchhhchhhhhcCCceeeEeccCCCCHHHHHHHHHHHHHhccchhhhhhhhHHHHHHH
Q 035561 580 NQLLVELDGFEKQDGVVLMATTRNIKQIDEALQRPGRMDRIFNLQKPTQSEREKILRIAAQETMDEELIDLVDWRKVAEK 659 (979)
Q Consensus 580 n~LL~~LDg~~~~~~ViVIATTN~pe~LDpALlRpgRFd~~I~~~~Pd~eeR~~IL~~~l~~~~~~~l~~dvdL~~LA~~ 659 (979)
|.|++.|+.. .+.+++|.+|+.++.|++.+++ |+ ..+.|..++.++....++..+++.. ...++..+..+++.
T Consensus 137 naLLk~LEep--p~~~~fIl~t~~~~kl~~tI~S--Rc-~~~~f~~l~~~~i~~~L~~i~~~eg--i~i~~~al~~la~~ 209 (576)
T PRK14965 137 NALLKTLEEP--PPHVKFIFATTEPHKVPITILS--RC-QRFDFRRIPLQKIVDRLRYIADQEG--ISISDAALALVARK 209 (576)
T ss_pred HHHHHHHHcC--CCCeEEEEEeCChhhhhHHHHH--hh-hhhhcCCCCHHHHHHHHHHHHHHhC--CCCCHHHHHHHHHH
Confidence 7888888753 3456777777888999999998 54 5889999999999988888877642 22445567888888
Q ss_pred cCCCCHHHHHHH
Q 035561 660 TALLRPIELKLV 671 (979)
Q Consensus 660 T~GfsgaDL~~L 671 (979)
+.| +..+..++
T Consensus 210 a~G-~lr~al~~ 220 (576)
T PRK14965 210 GDG-SMRDSLST 220 (576)
T ss_pred cCC-CHHHHHHH
Confidence 887 33343333
No 103
>PRK07133 DNA polymerase III subunits gamma and tau; Validated
Probab=99.43 E-value=4.1e-12 Score=154.01 Aligned_cols=193 Identities=18% Similarity=0.258 Sum_probs=135.0
Q ss_pred CCCCCCCCcccCcHHHHHHHHHHHHhhcChhHHHhcCCCCCceeEecCCCCCChHHHHHHHHHHcCCCEE---Eeechhh
Q 035561 448 KNPPIPLKDFASVESMREEINEVVAFLQNPSAFQEMGARAPRGVLIVGERGTGKTSLALAIAAEARVPVV---NVEAQEL 524 (979)
Q Consensus 448 ~~~~~~f~DIvGleevke~L~eiV~~L~~p~~f~~lG~~~P~gVLL~GPPGTGKTtLArAlA~elg~~~i---~Is~sdL 524 (979)
+++|.+|+||+|++.+++.|+..+.. .+.+..+||+||+|||||++|+++|+.+.++-- .-.|..+
T Consensus 11 KyRP~~f~dIiGQe~~v~~L~~aI~~-----------~rl~HAYLF~GP~GtGKTt~AriLAk~LnC~~~~~~~~pC~~C 79 (725)
T PRK07133 11 KYRPKTFDDIVGQDHIVQTLKNIIKS-----------NKISHAYLFSGPRGTGKTSVAKIFANALNCSHKTDLLEPCQEC 79 (725)
T ss_pred HhCCCCHHHhcCcHHHHHHHHHHHHc-----------CCCCeEEEEECCCCCcHHHHHHHHHHHhcccccCCCCCchhHH
Confidence 57789999999999999998866632 234567899999999999999999999865311 0112111
Q ss_pred hh--hh----h--c---ccchhhHHHHHHHHHhc----CCeEEEEcCccccccccccccCCCchhhHHHHHHHHhhhccc
Q 035561 525 EA--GL----W--V---GQSASNVRELFQTARDL----APVIIFVEDFDLFAGVRGQFIHTKQQDHESFINQLLVELDGF 589 (979)
Q Consensus 525 ~~--~~----~--v---G~~~~~Ir~lF~~A~~~----aP~ILfIDEIDaL~~~r~~~~~~~~~~~~~iln~LL~~LDg~ 589 (979)
.. +. + . ..+...+|++.+.+... ...|++|||+|.+. ....+.||..|+..
T Consensus 80 ~~~~~~~~Dvieidaasn~~vd~IReLie~~~~~P~~g~~KV~IIDEa~~LT--------------~~A~NALLKtLEEP 145 (725)
T PRK07133 80 IENVNNSLDIIEMDAASNNGVDEIRELIENVKNLPTQSKYKIYIIDEVHMLS--------------KSAFNALLKTLEEP 145 (725)
T ss_pred HHhhcCCCcEEEEeccccCCHHHHHHHHHHHHhchhcCCCEEEEEEChhhCC--------------HHHHHHHHHHhhcC
Confidence 00 00 0 0 12345588888777642 34799999999873 23577888888753
Q ss_pred ccCCeEEEEecccchhhchhhhhcCCceeeEeccCCCCHHHHHHHHHHHHHhccchhhhhhhhHHHHHHHcCCCCHHHHH
Q 035561 590 EKQDGVVLMATTRNIKQIDEALQRPGRMDRIFNLQKPTQSEREKILRIAAQETMDEELIDLVDWRKVAEKTALLRPIELK 669 (979)
Q Consensus 590 ~~~~~ViVIATTN~pe~LDpALlRpgRFd~~I~~~~Pd~eeR~~IL~~~l~~~~~~~l~~dvdL~~LA~~T~GfsgaDL~ 669 (979)
.+.+++|.+|+.++.|++.+++ |+ ..+.|.+|+.++....|+..+.... ...++..+..+|+.+.| +.+++.
T Consensus 146 --P~~tifILaTte~~KLl~TI~S--Rc-q~ieF~~L~~eeI~~~L~~il~keg--I~id~eAl~~LA~lS~G-slR~Al 217 (725)
T PRK07133 146 --PKHVIFILATTEVHKIPLTILS--RV-QRFNFRRISEDEIVSRLEFILEKEN--ISYEKNALKLIAKLSSG-SLRDAL 217 (725)
T ss_pred --CCceEEEEEcCChhhhhHHHHh--hc-eeEEccCCCHHHHHHHHHHHHHHcC--CCCCHHHHHHHHHHcCC-CHHHHH
Confidence 3456666677788999999998 66 5899999999999999998876542 12234447778888877 444444
Q ss_pred HHHH
Q 035561 670 LVPV 673 (979)
Q Consensus 670 ~Lv~ 673 (979)
.++.
T Consensus 218 slLe 221 (725)
T PRK07133 218 SIAE 221 (725)
T ss_pred HHHH
Confidence 4443
No 104
>PRK08903 DnaA regulatory inactivator Hda; Validated
Probab=99.43 E-value=4.1e-12 Score=134.96 Aligned_cols=186 Identities=19% Similarity=0.216 Sum_probs=121.2
Q ss_pred CCCCCCCccc--CcHHHHHHHHHHHHhhcChhHHHhcCCCCCceeEecCCCCCChHHHHHHHHHHc---CCCEEEeechh
Q 035561 449 NPPIPLKDFA--SVESMREEINEVVAFLQNPSAFQEMGARAPRGVLIVGERGTGKTSLALAIAAEA---RVPVVNVEAQE 523 (979)
Q Consensus 449 ~~~~~f~DIv--Gleevke~L~eiV~~L~~p~~f~~lG~~~P~gVLL~GPPGTGKTtLArAlA~el---g~~~i~Is~sd 523 (979)
.++.+|++++ +...+...++++.. +...+.+++|+||||||||++|+++++++ +.+++++++.+
T Consensus 12 ~~~~~~d~f~~~~~~~~~~~l~~~~~-----------~~~~~~~~~l~G~~G~GKT~La~ai~~~~~~~~~~~~~i~~~~ 80 (227)
T PRK08903 12 PPPPTFDNFVAGENAELVARLRELAA-----------GPVADRFFYLWGEAGSGRSHLLQALVADASYGGRNARYLDAAS 80 (227)
T ss_pred CChhhhcccccCCcHHHHHHHHHHHh-----------ccCCCCeEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEEehHH
Confidence 4567899977 33445555554332 23445689999999999999999999975 67899999877
Q ss_pred hhhhhhcccchhhHHHHHHHHHhcCCeEEEEcCccccccccccccCCCchhhHHHHHHHHhhhcccccCCe-EEEEeccc
Q 035561 524 LEAGLWVGQSASNVRELFQTARDLAPVIIFVEDFDLFAGVRGQFIHTKQQDHESFINQLLVELDGFEKQDG-VVLMATTR 602 (979)
Q Consensus 524 L~~~~~vG~~~~~Ir~lF~~A~~~aP~ILfIDEIDaL~~~r~~~~~~~~~~~~~iln~LL~~LDg~~~~~~-ViVIATTN 602 (979)
+. .. +. ....+.+|+|||+|.+.+ ... ..|+..++....... +++++++.
T Consensus 81 ~~-~~------------~~--~~~~~~~liiDdi~~l~~-----------~~~---~~L~~~~~~~~~~~~~~vl~~~~~ 131 (227)
T PRK08903 81 PL-LA------------FD--FDPEAELYAVDDVERLDD-----------AQQ---IALFNLFNRVRAHGQGALLVAGPA 131 (227)
T ss_pred hH-HH------------Hh--hcccCCEEEEeChhhcCc-----------hHH---HHHHHHHHHHHHcCCcEEEEeCCC
Confidence 64 11 11 122467999999998731 111 233334443333333 34554444
Q ss_pred chh--hchhhhhcCCce--eeEeccCCCCHHHHHHHHHHHHHhccchhhhhhhhHHHHHHHcCCCCHHHHHHHHHHHhhh
Q 035561 603 NIK--QIDEALQRPGRM--DRIFNLQKPTQSEREKILRIAAQETMDEELIDLVDWRKVAEKTALLRPIELKLVPVALEGS 678 (979)
Q Consensus 603 ~pe--~LDpALlRpgRF--d~~I~~~~Pd~eeR~~IL~~~l~~~~~~~l~~dvdL~~LA~~T~GfsgaDL~~Lv~aa~~a 678 (979)
.|. .+.+.|++ || ...+.+++|+.+++..+++.+..... ...++.-+..|++..+| +..++..+++.+...
T Consensus 132 ~~~~~~l~~~L~s--r~~~~~~i~l~pl~~~~~~~~l~~~~~~~~--v~l~~~al~~L~~~~~g-n~~~l~~~l~~l~~~ 206 (227)
T PRK08903 132 APLALPLREDLRT--RLGWGLVYELKPLSDADKIAALKAAAAERG--LQLADEVPDYLLTHFRR-DMPSLMALLDALDRY 206 (227)
T ss_pred CHHhCCCCHHHHH--HHhcCeEEEecCCCHHHHHHHHHHHHHHcC--CCCCHHHHHHHHHhccC-CHHHHHHHHHHHHHH
Confidence 442 34577777 66 57999999999999999998776542 22344567788887766 667777776665544
Q ss_pred h
Q 035561 679 A 679 (979)
Q Consensus 679 a 679 (979)
+
T Consensus 207 ~ 207 (227)
T PRK08903 207 S 207 (227)
T ss_pred H
Confidence 3
No 105
>TIGR02928 orc1/cdc6 family replication initiation protein. Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other.
Probab=99.43 E-value=4.4e-12 Score=143.42 Aligned_cols=171 Identities=21% Similarity=0.303 Sum_probs=115.4
Q ss_pred CCCCCCcccCcHHHHHHHHHHHHhhcChhHHHhcCCCCCceeEecCCCCCChHHHHHHHHHHcC---------CCEEEee
Q 035561 450 PPIPLKDFASVESMREEINEVVAFLQNPSAFQEMGARAPRGVLIVGERGTGKTSLALAIAAEAR---------VPVVNVE 520 (979)
Q Consensus 450 ~~~~f~DIvGleevke~L~eiV~~L~~p~~f~~lG~~~P~gVLL~GPPGTGKTtLArAlA~elg---------~~~i~Is 520 (979)
+....++++|.++..+.|...+..... | ..|.+++|+||||||||++++++++++. .++++++
T Consensus 10 ~~~~p~~l~gRe~e~~~l~~~l~~~~~-------~-~~~~~i~I~G~~GtGKT~l~~~~~~~l~~~~~~~~~~~~~v~in 81 (365)
T TIGR02928 10 PDYVPDRIVHRDEQIEELAKALRPILR-------G-SRPSNVFIYGKTGTGKTAVTKYVMKELEEAAEDRDVRVVTVYVN 81 (365)
T ss_pred CCCCCCCCCCcHHHHHHHHHHHHHHHc-------C-CCCCcEEEECCCCCCHHHHHHHHHHHHHHHhhccCCceEEEEEE
Confidence 344457899999888888766644211 1 3456799999999999999999998753 5788889
Q ss_pred chhhhhh---------hhc--cc-------c-hhhHHHHHHHHHh-cCCeEEEEcCccccccccccccCCCchhhHHHHH
Q 035561 521 AQELEAG---------LWV--GQ-------S-ASNVRELFQTARD-LAPVIIFVEDFDLFAGVRGQFIHTKQQDHESFIN 580 (979)
Q Consensus 521 ~sdL~~~---------~~v--G~-------~-~~~Ir~lF~~A~~-~aP~ILfIDEIDaL~~~r~~~~~~~~~~~~~iln 580 (979)
|....+. ... |. + ...+..+++.... ..+.||+|||+|.+.+. ....+.
T Consensus 82 ~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlvIDE~d~L~~~-----------~~~~L~ 150 (365)
T TIGR02928 82 CQILDTLYQVLVELANQLRGSGEEVPTTGLSTSEVFRRLYKELNERGDSLIIVLDEIDYLVGD-----------DDDLLY 150 (365)
T ss_pred CCCCCCHHHHHHHHHHHHhhcCCCCCCCCCCHHHHHHHHHHHHHhcCCeEEEEECchhhhccC-----------CcHHHH
Confidence 8654210 010 11 1 1223445554432 35789999999999621 112445
Q ss_pred HHHhhhccc-ccCCeEEEEecccchh---hchhhhhcCCcee-eEeccCCCCHHHHHHHHHHHHHh
Q 035561 581 QLLVELDGF-EKQDGVVLMATTRNIK---QIDEALQRPGRMD-RIFNLQKPTQSEREKILRIAAQE 641 (979)
Q Consensus 581 ~LL~~LDg~-~~~~~ViVIATTN~pe---~LDpALlRpgRFd-~~I~~~~Pd~eeR~~IL~~~l~~ 641 (979)
.|+...+.. ..+.++.+|+++|.++ .+++.+.+ ||. ..+.|++++.++..+|++..++.
T Consensus 151 ~l~~~~~~~~~~~~~v~lI~i~n~~~~~~~l~~~~~s--~~~~~~i~f~p~~~~e~~~il~~r~~~ 214 (365)
T TIGR02928 151 QLSRARSNGDLDNAKVGVIGISNDLKFRENLDPRVKS--SLCEEEIIFPPYDAEELRDILENRAEK 214 (365)
T ss_pred hHhccccccCCCCCeEEEEEEECCcchHhhcCHHHhc--cCCcceeeeCCCCHHHHHHHHHHHHHh
Confidence 555432111 1235788888998865 58888888 775 67999999999999999999863
No 106
>PRK10787 DNA-binding ATP-dependent protease La; Provisional
Probab=99.42 E-value=1e-12 Score=162.37 Aligned_cols=164 Identities=21% Similarity=0.277 Sum_probs=121.6
Q ss_pred cccCcHHHHHHHHHHHHhhcChhHHHhcCCCCCceeEecCCCCCChHHHHHHHHHHcCCCEEEeechhhhh--------h
Q 035561 456 DFASVESMREEINEVVAFLQNPSAFQEMGARAPRGVLIVGERGTGKTSLALAIAAEARVPVVNVEAQELEA--------G 527 (979)
Q Consensus 456 DIvGleevke~L~eiV~~L~~p~~f~~lG~~~P~gVLL~GPPGTGKTtLArAlA~elg~~~i~Is~sdL~~--------~ 527 (979)
|+.|++++|+.+.+.+...... +-.....++|+||||||||++++++|+.++.+++.++++.... .
T Consensus 323 ~~~g~~~vK~~i~~~l~~~~~~------~~~~g~~i~l~GppG~GKTtl~~~ia~~l~~~~~~i~~~~~~d~~~i~g~~~ 396 (784)
T PRK10787 323 DHYGLERVKDRILEYLAVQSRV------NKIKGPILCLVGPPGVGKTSLGQSIAKATGRKYVRMALGGVRDEAEIRGHRR 396 (784)
T ss_pred hccCHHHHHHHHHHHHHHHHhc------ccCCCceEEEECCCCCCHHHHHHHHHHHhCCCEEEEEcCCCCCHHHhccchh
Confidence 5999999999998777653221 1112346999999999999999999999999999988765321 1
Q ss_pred hhcccchhhHHHHHHHHHhcCCeEEEEcCccccccccccccCCCchhhHHHHHHHHhhhcc-----cc--------cCCe
Q 035561 528 LWVGQSASNVRELFQTARDLAPVIIFVEDFDLFAGVRGQFIHTKQQDHESFINQLLVELDG-----FE--------KQDG 594 (979)
Q Consensus 528 ~~vG~~~~~Ir~lF~~A~~~aP~ILfIDEIDaL~~~r~~~~~~~~~~~~~iln~LL~~LDg-----~~--------~~~~ 594 (979)
.|.|.....+...+..+.... .||||||+|.+.+... ....+.|+..+|. |. .-++
T Consensus 397 ~~~g~~~G~~~~~l~~~~~~~-~villDEidk~~~~~~----------g~~~~aLlevld~~~~~~~~d~~~~~~~dls~ 465 (784)
T PRK10787 397 TYIGSMPGKLIQKMAKVGVKN-PLFLLDEIDKMSSDMR----------GDPASALLEVLDPEQNVAFSDHYLEVDYDLSD 465 (784)
T ss_pred ccCCCCCcHHHHHHHhcCCCC-CEEEEEChhhcccccC----------CCHHHHHHHHhccccEEEEecccccccccCCc
Confidence 256666667776676665434 4789999999864321 1123456665653 11 2267
Q ss_pred EEEEecccchhhchhhhhcCCceeeEeccCCCCHHHHHHHHHHHHH
Q 035561 595 VVLMATTRNIKQIDEALQRPGRMDRIFNLQKPTQSEREKILRIAAQ 640 (979)
Q Consensus 595 ViVIATTN~pe~LDpALlRpgRFd~~I~~~~Pd~eeR~~IL~~~l~ 640 (979)
+++|||||.. .|||+|++ ||. .|.++.++.++..+|.+.++.
T Consensus 466 v~~i~TaN~~-~i~~aLl~--R~~-ii~~~~~t~eek~~Ia~~~L~ 507 (784)
T PRK10787 466 VMFVATSNSM-NIPAPLLD--RME-VIRLSGYTEDEKLNIAKRHLL 507 (784)
T ss_pred eEEEEcCCCC-CCCHHHhc--cee-eeecCCCCHHHHHHHHHHhhh
Confidence 8999999987 59999999 995 799999999999999999984
No 107
>PRK14088 dnaA chromosomal replication initiation protein; Provisional
Probab=99.42 E-value=2.6e-12 Score=149.99 Aligned_cols=202 Identities=18% Similarity=0.264 Sum_probs=126.5
Q ss_pred CCCCCCCcccCcHHHHHHHHHHHHhhcChhHHHhcCCCCCceeEecCCCCCChHHHHHHHHHHc-----CCCEEEeechh
Q 035561 449 NPPIPLKDFASVESMREEINEVVAFLQNPSAFQEMGARAPRGVLIVGERGTGKTSLALAIAAEA-----RVPVVNVEAQE 523 (979)
Q Consensus 449 ~~~~~f~DIvGleevke~L~eiV~~L~~p~~f~~lG~~~P~gVLL~GPPGTGKTtLArAlA~el-----g~~~i~Is~sd 523 (979)
.+..+|++++.-+.-............+| |. ..+++||||||||||+|++++|+++ +..++++++.+
T Consensus 99 ~~~~tFdnFv~g~~n~~a~~~~~~~~~~~------~~--~n~l~lyG~~G~GKTHLl~ai~~~l~~~~~~~~v~yi~~~~ 170 (440)
T PRK14088 99 NPDYTFENFVVGPGNSFAYHAALEVAKNP------GR--YNPLFIYGGVGLGKTHLLQSIGNYVVQNEPDLRVMYITSEK 170 (440)
T ss_pred CCCCcccccccCCchHHHHHHHHHHHhCc------CC--CCeEEEEcCCCCcHHHHHHHHHHHHHHhCCCCeEEEEEHHH
Confidence 46789999883333333333333333222 11 3459999999999999999999986 46789999988
Q ss_pred hhhhhhcccchhhHHHHHHHHHhcCCeEEEEcCccccccccccccCCCchhhHHHHHHHHhhhcccccCCeEEEEecccc
Q 035561 524 LEAGLWVGQSASNVRELFQTARDLAPVIIFVEDFDLFAGVRGQFIHTKQQDHESFINQLLVELDGFEKQDGVVLMATTRN 603 (979)
Q Consensus 524 L~~~~~vG~~~~~Ir~lF~~A~~~aP~ILfIDEIDaL~~~r~~~~~~~~~~~~~iln~LL~~LDg~~~~~~ViVIATTN~ 603 (979)
+............+.. |.......+.+|+|||++.+.+..+ . ...|+..++.+......+|+++.+.
T Consensus 171 f~~~~~~~~~~~~~~~-f~~~~~~~~dvLlIDDi~~l~~~~~---------~---q~elf~~~n~l~~~~k~iIitsd~~ 237 (440)
T PRK14088 171 FLNDLVDSMKEGKLNE-FREKYRKKVDVLLIDDVQFLIGKTG---------V---QTELFHTFNELHDSGKQIVICSDRE 237 (440)
T ss_pred HHHHHHHHHhcccHHH-HHHHHHhcCCEEEEechhhhcCcHH---------H---HHHHHHHHHHHHHcCCeEEEECCCC
Confidence 7632211111112222 3332233689999999998754211 1 1122233333323334566766677
Q ss_pred hhh---chhhhhcCCcee--eEeccCCCCHHHHHHHHHHHHHhccchhhhhhhhHHHHHHHcCCCCHHHHHHHHHHHh
Q 035561 604 IKQ---IDEALQRPGRMD--RIFNLQKPTQSEREKILRIAAQETMDEELIDLVDWRKVAEKTALLRPIELKLVPVALE 676 (979)
Q Consensus 604 pe~---LDpALlRpgRFd--~~I~~~~Pd~eeR~~IL~~~l~~~~~~~l~~dvdL~~LA~~T~GfsgaDL~~Lv~aa~ 676 (979)
|.. +.+.+.+ ||. ..+.+++||.+.|.+|++..++... ...++..+..||+...| +..+|..++..+.
T Consensus 238 p~~l~~l~~rL~S--R~~~gl~v~i~~pd~e~r~~IL~~~~~~~~--~~l~~ev~~~Ia~~~~~-~~R~L~g~l~~l~ 310 (440)
T PRK14088 238 PQKLSEFQDRLVS--RFQMGLVAKLEPPDEETRKKIARKMLEIEH--GELPEEVLNFVAENVDD-NLRRLRGAIIKLL 310 (440)
T ss_pred HHHHHHHHHHHhh--HHhcCceEeeCCCCHHHHHHHHHHHHHhcC--CCCCHHHHHHHHhcccc-CHHHHHHHHHHHH
Confidence 765 5677888 664 5789999999999999999987542 22344458889988877 5556665554443
No 108
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed
Probab=99.41 E-value=2.6e-12 Score=157.22 Aligned_cols=184 Identities=21% Similarity=0.331 Sum_probs=122.2
Q ss_pred CCCCCCCCcccCcHHHHHH---HHHHHHhhcChhHHHhcCCCCCceeEecCCCCCChHHHHHHHHHHcCCCEEEeechhh
Q 035561 448 KNPPIPLKDFASVESMREE---INEVVAFLQNPSAFQEMGARAPRGVLIVGERGTGKTSLALAIAAEARVPVVNVEAQEL 524 (979)
Q Consensus 448 ~~~~~~f~DIvGleevke~---L~eiV~~L~~p~~f~~lG~~~P~gVLL~GPPGTGKTtLArAlA~elg~~~i~Is~sdL 524 (979)
+.+|.+|+|++|++.+... |+..+. . ....++|||||||||||++|+++|+..+.+++.++++..
T Consensus 21 k~RP~tldd~vGQe~ii~~~~~L~~~i~---~---------~~~~slLL~GPpGtGKTTLA~aIA~~~~~~f~~lna~~~ 88 (725)
T PRK13341 21 RLRPRTLEEFVGQDHILGEGRLLRRAIK---A---------DRVGSLILYGPPGVGKTTLARIIANHTRAHFSSLNAVLA 88 (725)
T ss_pred hcCCCcHHHhcCcHHHhhhhHHHHHHHh---c---------CCCceEEEECCCCCCHHHHHHHHHHHhcCcceeehhhhh
Confidence 4567899999999988753 443331 1 123469999999999999999999999999999887532
Q ss_pred hhhhhcccchhhHHHHHHHHH-----hcCCeEEEEcCccccccccccccCCCchhhHHHHHHHHhhhcccccCCeEEEEe
Q 035561 525 EAGLWVGQSASNVRELFQTAR-----DLAPVIIFVEDFDLFAGVRGQFIHTKQQDHESFINQLLVELDGFEKQDGVVLMA 599 (979)
Q Consensus 525 ~~~~~vG~~~~~Ir~lF~~A~-----~~aP~ILfIDEIDaL~~~r~~~~~~~~~~~~~iln~LL~~LDg~~~~~~ViVIA 599 (979)
+ ...+++.++.+. .....+|||||+|.+.. ...+.|+..++. ..+++|+
T Consensus 89 --~------i~dir~~i~~a~~~l~~~~~~~IL~IDEIh~Ln~--------------~qQdaLL~~lE~----g~IiLI~ 142 (725)
T PRK13341 89 --G------VKDLRAEVDRAKERLERHGKRTILFIDEVHRFNK--------------AQQDALLPWVEN----GTITLIG 142 (725)
T ss_pred --h------hHHHHHHHHHHHHHhhhcCCceEEEEeChhhCCH--------------HHHHHHHHHhcC----ceEEEEE
Confidence 1 123444444442 12467999999998732 112345544432 3455555
Q ss_pred c-ccch-hhchhhhhcCCceeeEeccCCCCHHHHHHHHHHHHHhcc-----chhhhhhhhHHHHHHHcCCCCHHHHHHHH
Q 035561 600 T-TRNI-KQIDEALQRPGRMDRIFNLQKPTQSEREKILRIAAQETM-----DEELIDLVDWRKVAEKTALLRPIELKLVP 672 (979)
Q Consensus 600 T-TN~p-e~LDpALlRpgRFd~~I~~~~Pd~eeR~~IL~~~l~~~~-----~~~l~~dvdL~~LA~~T~GfsgaDL~~Lv 672 (979)
+ |.++ ..+++++++ |. ..+.|++++.+++..|++..+.... .....++..+..|++.++| |+..+.
T Consensus 143 aTTenp~~~l~~aL~S--R~-~v~~l~pLs~edi~~IL~~~l~~~~~~~g~~~v~I~deaL~~La~~s~G----D~R~ll 215 (725)
T PRK13341 143 ATTENPYFEVNKALVS--RS-RLFRLKSLSDEDLHQLLKRALQDKERGYGDRKVDLEPEAEKHLVDVANG----DARSLL 215 (725)
T ss_pred ecCCChHhhhhhHhhc--cc-cceecCCCCHHHHHHHHHHHHHHHHhhcCCcccCCCHHHHHHHHHhCCC----CHHHHH
Confidence 4 4343 578999998 53 5789999999999999999887310 0112344457778887755 444444
Q ss_pred HHHh
Q 035561 673 VALE 676 (979)
Q Consensus 673 ~aa~ 676 (979)
+.++
T Consensus 216 n~Le 219 (725)
T PRK13341 216 NALE 219 (725)
T ss_pred HHHH
Confidence 4433
No 109
>KOG2004 consensus Mitochondrial ATP-dependent protease PIM1/LON [Posttranslational modification, protein turnover, chaperones]
Probab=99.41 E-value=1.5e-12 Score=153.26 Aligned_cols=165 Identities=23% Similarity=0.337 Sum_probs=127.8
Q ss_pred CcccCcHHHHHHHHHHHHh--hcChhHHHhcCCCCCceeEecCCCCCChHHHHHHHHHHcCCCEEEeechhhhh------
Q 035561 455 KDFASVESMREEINEVVAF--LQNPSAFQEMGARAPRGVLIVGERGTGKTSLALAIAAEARVPVVNVEAQELEA------ 526 (979)
Q Consensus 455 ~DIvGleevke~L~eiV~~--L~~p~~f~~lG~~~P~gVLL~GPPGTGKTtLArAlA~elg~~~i~Is~sdL~~------ 526 (979)
+|--|++++|+.+.|++.- |+. ....+-+.|+||||+|||+++|+||..+|..|+.++...+..
T Consensus 411 eDHYgm~dVKeRILEfiAV~kLrg--------s~qGkIlCf~GPPGVGKTSI~kSIA~ALnRkFfRfSvGG~tDvAeIkG 482 (906)
T KOG2004|consen 411 EDHYGMEDVKERILEFIAVGKLRG--------SVQGKILCFVGPPGVGKTSIAKSIARALNRKFFRFSVGGMTDVAEIKG 482 (906)
T ss_pred ccccchHHHHHHHHHHHHHHhhcc--------cCCCcEEEEeCCCCCCcccHHHHHHHHhCCceEEEeccccccHHhhcc
Confidence 5889999999999988765 332 222345789999999999999999999999999998755431
Q ss_pred --hhhcccchhhHHHHHHHHHhcCCeEEEEcCccccccccccccCCCchhhHHHHHHHHhhhcccc-------------c
Q 035561 527 --GLWVGQSASNVRELFQTARDLAPVIIFVEDFDLFAGVRGQFIHTKQQDHESFINQLLVELDGFE-------------K 591 (979)
Q Consensus 527 --~~~vG~~~~~Ir~lF~~A~~~aP~ILfIDEIDaL~~~r~~~~~~~~~~~~~iln~LL~~LDg~~-------------~ 591 (979)
..|+|..-.++-+..+...-+.| +++|||||.+++ +. .++ . .+.||..||.=+ .
T Consensus 483 HRRTYVGAMPGkiIq~LK~v~t~NP-liLiDEvDKlG~--g~---qGD--P---asALLElLDPEQNanFlDHYLdVp~D 551 (906)
T KOG2004|consen 483 HRRTYVGAMPGKIIQCLKKVKTENP-LILIDEVDKLGS--GH---QGD--P---ASALLELLDPEQNANFLDHYLDVPVD 551 (906)
T ss_pred cceeeeccCChHHHHHHHhhCCCCc-eEEeehhhhhCC--CC---CCC--h---HHHHHHhcChhhccchhhhccccccc
Confidence 12889888898888888877666 666999999973 21 111 1 124555555311 1
Q ss_pred CCeEEEEecccchhhchhhhhcCCceeeEeccCCCCHHHHHHHHHHHHHh
Q 035561 592 QDGVVLMATTRNIKQIDEALQRPGRMDRIFNLQKPTQSEREKILRIAAQE 641 (979)
Q Consensus 592 ~~~ViVIATTN~pe~LDpALlRpgRFd~~I~~~~Pd~eeR~~IL~~~l~~ 641 (979)
-+.|++|||+|..+.||++|+. |+ ..|+++-+..++...|.+.|+-.
T Consensus 552 LSkVLFicTAN~idtIP~pLlD--RM-EvIelsGYv~eEKv~IA~~yLip 598 (906)
T KOG2004|consen 552 LSKVLFICTANVIDTIPPPLLD--RM-EVIELSGYVAEEKVKIAERYLIP 598 (906)
T ss_pred hhheEEEEeccccccCChhhhh--hh-heeeccCccHHHHHHHHHHhhhh
Confidence 2569999999999999999999 88 58999999999999999998753
No 110
>PRK09111 DNA polymerase III subunits gamma and tau; Validated
Probab=99.40 E-value=6.8e-12 Score=150.85 Aligned_cols=210 Identities=16% Similarity=0.191 Sum_probs=142.2
Q ss_pred CCCCCCCCcccCcHHHHHHHHHHHHhhcChhHHHhcCCCCCceeEecCCCCCChHHHHHHHHHHcCCCEEEe--------
Q 035561 448 KNPPIPLKDFASVESMREEINEVVAFLQNPSAFQEMGARAPRGVLIVGERGTGKTSLALAIAAEARVPVVNV-------- 519 (979)
Q Consensus 448 ~~~~~~f~DIvGleevke~L~eiV~~L~~p~~f~~lG~~~P~gVLL~GPPGTGKTtLArAlA~elg~~~i~I-------- 519 (979)
++++.+|+||+|++.+++.|...+. ..+.|.++||+||+|+|||++|+++|+.+++..-..
T Consensus 17 KyRP~~f~dliGq~~~v~~L~~~~~-----------~gri~ha~L~~Gp~GvGKTt~Ar~lAk~L~c~~~~~~~~~~~~~ 85 (598)
T PRK09111 17 KYRPQTFDDLIGQEAMVRTLTNAFE-----------TGRIAQAFMLTGVRGVGKTTTARILARALNYEGPDGDGGPTIDL 85 (598)
T ss_pred hhCCCCHHHhcCcHHHHHHHHHHHH-----------cCCCCceEEEECCCCCCHHHHHHHHHHhhCcCCccccCCCcccc
Confidence 5778899999999999999986553 234577899999999999999999999987532111
Q ss_pred -----echhhhhhhhc---------ccchhhHHHHHHHHHhc----CCeEEEEcCccccccccccccCCCchhhHHHHHH
Q 035561 520 -----EAQELEAGLWV---------GQSASNVRELFQTARDL----APVIIFVEDFDLFAGVRGQFIHTKQQDHESFINQ 581 (979)
Q Consensus 520 -----s~sdL~~~~~v---------G~~~~~Ir~lF~~A~~~----aP~ILfIDEIDaL~~~r~~~~~~~~~~~~~iln~ 581 (979)
+|..+..+.+. ..+...+|++.+.+... ...|++|||+|.+. ....|.
T Consensus 86 cg~c~~C~~i~~g~h~Dv~e~~a~s~~gvd~IReIie~~~~~P~~a~~KVvIIDEad~Ls--------------~~a~na 151 (598)
T PRK09111 86 CGVGEHCQAIMEGRHVDVLEMDAASHTGVDDIREIIESVRYRPVSARYKVYIIDEVHMLS--------------TAAFNA 151 (598)
T ss_pred CcccHHHHHHhcCCCCceEEecccccCCHHHHHHHHHHHHhchhcCCcEEEEEEChHhCC--------------HHHHHH
Confidence 11111111100 12345688888777532 24799999999872 235678
Q ss_pred HHhhhcccccCCeEEEEecccchhhchhhhhcCCceeeEeccCCCCHHHHHHHHHHHHHhccchhhhhhhhHHHHHHHcC
Q 035561 582 LLVELDGFEKQDGVVLMATTRNIKQIDEALQRPGRMDRIFNLQKPTQSEREKILRIAAQETMDEELIDLVDWRKVAEKTA 661 (979)
Q Consensus 582 LL~~LDg~~~~~~ViVIATTN~pe~LDpALlRpgRFd~~I~~~~Pd~eeR~~IL~~~l~~~~~~~l~~dvdL~~LA~~T~ 661 (979)
||+.|+... +.+++|.+|+.++.+.+.+++ |+ ..+.|..|+.++....++..+++.. ...++..+..|++.+.
T Consensus 152 LLKtLEePp--~~~~fIl~tte~~kll~tI~S--Rc-q~~~f~~l~~~el~~~L~~i~~keg--i~i~~eAl~lIa~~a~ 224 (598)
T PRK09111 152 LLKTLEEPP--PHVKFIFATTEIRKVPVTVLS--RC-QRFDLRRIEADVLAAHLSRIAAKEG--VEVEDEALALIARAAE 224 (598)
T ss_pred HHHHHHhCC--CCeEEEEEeCChhhhhHHHHh--he-eEEEecCCCHHHHHHHHHHHHHHcC--CCCCHHHHHHHHHHcC
Confidence 888887543 345555566777888889988 55 6899999999999999998887652 2234456777888887
Q ss_pred CCCHHHHHHHHHHHhhhhhccCCCChHHHhh
Q 035561 662 LLRPIELKLVPVALEGSAFRSKFLDTDELMS 692 (979)
Q Consensus 662 GfsgaDL~~Lv~aa~~aa~r~~~~s~~ei~~ 692 (979)
| +..++.++...+... ....++.+++..
T Consensus 225 G-dlr~al~~Ldkli~~--g~g~It~e~V~~ 252 (598)
T PRK09111 225 G-SVRDGLSLLDQAIAH--GAGEVTAEAVRD 252 (598)
T ss_pred C-CHHHHHHHHHHHHhh--cCCCcCHHHHHH
Confidence 7 555555544332222 223455555443
No 111
>PRK00440 rfc replication factor C small subunit; Reviewed
Probab=99.40 E-value=5.2e-12 Score=139.67 Aligned_cols=204 Identities=18% Similarity=0.210 Sum_probs=131.0
Q ss_pred hcccCCCCCCCCcccCcHHHHHHHHHHHHhhcChhHHHhcCCCCCceeEecCCCCCChHHHHHHHHHHcC-----CCEEE
Q 035561 444 MKRVKNPPIPLKDFASVESMREEINEVVAFLQNPSAFQEMGARAPRGVLIVGERGTGKTSLALAIAAEAR-----VPVVN 518 (979)
Q Consensus 444 l~~v~~~~~~f~DIvGleevke~L~eiV~~L~~p~~f~~lG~~~P~gVLL~GPPGTGKTtLArAlA~elg-----~~~i~ 518 (979)
++..+++|.+|+|++|.+++++.|...+.. ....++||+||||||||++++++++++. .+++.
T Consensus 6 ~w~~kyrP~~~~~~~g~~~~~~~l~~~i~~------------~~~~~~ll~G~~G~GKt~~~~~l~~~l~~~~~~~~~i~ 73 (319)
T PRK00440 6 IWVEKYRPRTLDEIVGQEEIVERLKSYVKE------------KNMPHLLFAGPPGTGKTTAALALARELYGEDWRENFLE 73 (319)
T ss_pred ccchhhCCCcHHHhcCcHHHHHHHHHHHhC------------CCCCeEEEECCCCCCHHHHHHHHHHHHcCCccccceEE
Confidence 344577889999999999999988866531 1122589999999999999999999873 34555
Q ss_pred eechhhhhhhhcccchhhHHHHHHHHHh------cCCeEEEEcCccccccccccccCCCchhhHHHHHHHHhhhcccccC
Q 035561 519 VEAQELEAGLWVGQSASNVRELFQTARD------LAPVIIFVEDFDLFAGVRGQFIHTKQQDHESFINQLLVELDGFEKQ 592 (979)
Q Consensus 519 Is~sdL~~~~~vG~~~~~Ir~lF~~A~~------~aP~ILfIDEIDaL~~~r~~~~~~~~~~~~~iln~LL~~LDg~~~~ 592 (979)
+++++-. ....+++.+..... ..+.+|+|||+|.+.. ...+.|+..++.....
T Consensus 74 ~~~~~~~-------~~~~~~~~i~~~~~~~~~~~~~~~vviiDe~~~l~~--------------~~~~~L~~~le~~~~~ 132 (319)
T PRK00440 74 LNASDER-------GIDVIRNKIKEFARTAPVGGAPFKIIFLDEADNLTS--------------DAQQALRRTMEMYSQN 132 (319)
T ss_pred ecccccc-------chHHHHHHHHHHHhcCCCCCCCceEEEEeCcccCCH--------------HHHHHHHHHHhcCCCC
Confidence 5554321 11122222222211 2357999999998731 1223455555554333
Q ss_pred CeEEEEecccchhhchhhhhcCCceeeEeccCCCCHHHHHHHHHHHHHhccchhhhhhhhHHHHHHHcCCCCHHHHHHHH
Q 035561 593 DGVVLMATTRNIKQIDEALQRPGRMDRIFNLQKPTQSEREKILRIAAQETMDEELIDLVDWRKVAEKTALLRPIELKLVP 672 (979)
Q Consensus 593 ~~ViVIATTN~pe~LDpALlRpgRFd~~I~~~~Pd~eeR~~IL~~~l~~~~~~~l~~dvdL~~LA~~T~GfsgaDL~~Lv 672 (979)
..+|.++|.+..+.+++.+ |+. .++|++|+.++...+++.++++... ..+...+..+++.+.| |+..+.
T Consensus 133 --~~lIl~~~~~~~l~~~l~s--r~~-~~~~~~l~~~ei~~~l~~~~~~~~~--~i~~~al~~l~~~~~g----d~r~~~ 201 (319)
T PRK00440 133 --TRFILSCNYSSKIIDPIQS--RCA-VFRFSPLKKEAVAERLRYIAENEGI--EITDDALEAIYYVSEG----DMRKAI 201 (319)
T ss_pred --CeEEEEeCCccccchhHHH--Hhh-eeeeCCCCHHHHHHHHHHHHHHcCC--CCCHHHHHHHHHHcCC----CHHHHH
Confidence 3445566777777778887 654 6899999999999999998876532 2345567888887765 455444
Q ss_pred HHHhhhhhccCCCChHHHh
Q 035561 673 VALEGSAFRSKFLDTDELM 691 (979)
Q Consensus 673 ~aa~~aa~r~~~~s~~ei~ 691 (979)
+.++.++.....++.+.+.
T Consensus 202 ~~l~~~~~~~~~it~~~v~ 220 (319)
T PRK00440 202 NALQAAAATGKEVTEEAVY 220 (319)
T ss_pred HHHHHHHHcCCCCCHHHHH
Confidence 4444333323344544443
No 112
>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN. Members of this family are the GvpN protein associated with the production of gas vesicles produced in some prokaryotes to give cells buoyancy. This family belongs to a larger family of ATPases (pfam07728).
Probab=99.40 E-value=1.4e-11 Score=134.51 Aligned_cols=132 Identities=22% Similarity=0.307 Sum_probs=91.5
Q ss_pred ceeEecCCCCCChHHHHHHHHHHcCCCEEEeechh------hhhhhhcccchhhHHH--------------------HHH
Q 035561 489 RGVLIVGERGTGKTSLALAIAAEARVPVVNVEAQE------LEAGLWVGQSASNVRE--------------------LFQ 542 (979)
Q Consensus 489 ~gVLL~GPPGTGKTtLArAlA~elg~~~i~Is~sd------L~~~~~vG~~~~~Ir~--------------------lF~ 542 (979)
..+||+||||||||++|+++|..+|.+++.++|.. ++ +.+.+.....+.. .+.
T Consensus 22 ~~vLL~G~~GtGKT~lA~~la~~lg~~~~~i~~~~~~~~~dll-g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~ 100 (262)
T TIGR02640 22 YPVHLRGPAGTGKTTLAMHVARKRDRPVMLINGDAELTTSDLV-GSYAGYTRKKVHDQFIHNVVKLEDIVRQNWVDNRLT 100 (262)
T ss_pred CeEEEEcCCCCCHHHHHHHHHHHhCCCEEEEeCCccCCHHHHh-hhhcccchhhHHHHHHHHhhhhhcccceeecCchHH
Confidence 46999999999999999999999999999998753 22 1122211111111 111
Q ss_pred HHHhcCCeEEEEcCccccccccccccCCCchhhHHHHHHHHhhhccc-------c-------cCCeEEEEecccch----
Q 035561 543 TARDLAPVIIFVEDFDLFAGVRGQFIHTKQQDHESFINQLLVELDGF-------E-------KQDGVVLMATTRNI---- 604 (979)
Q Consensus 543 ~A~~~aP~ILfIDEIDaL~~~r~~~~~~~~~~~~~iln~LL~~LDg~-------~-------~~~~ViVIATTN~p---- 604 (979)
.|.. .+.+|+|||++.+- ..+.+.|+..|+.- . .++++.||+|+|..
T Consensus 101 ~A~~-~g~~lllDEi~r~~--------------~~~q~~Ll~~Le~~~~~i~~~~~~~~~i~~~~~frvIaTsN~~~~~g 165 (262)
T TIGR02640 101 LAVR-EGFTLVYDEFTRSK--------------PETNNVLLSVFEEGVLELPGKRGTSRYVDVHPEFRVIFTSNPVEYAG 165 (262)
T ss_pred HHHH-cCCEEEEcchhhCC--------------HHHHHHHHHHhcCCeEEccCCCCCCceEecCCCCEEEEeeCCccccc
Confidence 2222 45799999999752 23444455555421 0 12357799999985
Q ss_pred -hhchhhhhcCCceeeEeccCCCCHHHHHHHHHHHH
Q 035561 605 -KQIDEALQRPGRMDRIFNLQKPTQSEREKILRIAA 639 (979)
Q Consensus 605 -e~LDpALlRpgRFd~~I~~~~Pd~eeR~~IL~~~l 639 (979)
..++++|++ || ..+.++.|+.++-.+|++.+.
T Consensus 166 ~~~l~~aL~~--R~-~~i~i~~P~~~~e~~Il~~~~ 198 (262)
T TIGR02640 166 VHETQDALLD--RL-ITIFMDYPDIDTETAILRAKT 198 (262)
T ss_pred eecccHHHHh--hc-EEEECCCCCHHHHHHHHHHhh
Confidence 367999999 88 688999999999999999876
No 113
>PRK08084 DNA replication initiation factor; Provisional
Probab=99.40 E-value=1.1e-11 Score=133.15 Aligned_cols=188 Identities=18% Similarity=0.171 Sum_probs=118.6
Q ss_pred CCCCCCCccc-C-cHHHHHHHHHHHHhhcChhHHHhcCCCCCceeEecCCCCCChHHHHHHHHHHc---CCCEEEeechh
Q 035561 449 NPPIPLKDFA-S-VESMREEINEVVAFLQNPSAFQEMGARAPRGVLIVGERGTGKTSLALAIAAEA---RVPVVNVEAQE 523 (979)
Q Consensus 449 ~~~~~f~DIv-G-leevke~L~eiV~~L~~p~~f~~lG~~~P~gVLL~GPPGTGKTtLArAlA~el---g~~~i~Is~sd 523 (979)
.+..+|++++ | ...+...++.+.. ...+.+++||||||||||+|++++|+++ +..+.+++..+
T Consensus 16 ~~~~~fd~f~~~~n~~a~~~l~~~~~------------~~~~~~l~l~Gp~G~GKThLl~a~~~~~~~~~~~v~y~~~~~ 83 (235)
T PRK08084 16 PDDETFASFYPGDNDSLLAALQNALR------------QEHSGYIYLWSREGAGRSHLLHAACAELSQRGRAVGYVPLDK 83 (235)
T ss_pred CCcCCccccccCccHHHHHHHHHHHh------------CCCCCeEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEEHHH
Confidence 3456899987 4 4445555544321 1123479999999999999999999876 44566777665
Q ss_pred hhhhhhcccchhhHHHHHHHHHhcCCeEEEEcCccccccccccccCCCchhhHHHHHHHHhhhcccccCC-eEEEEeccc
Q 035561 524 LEAGLWVGQSASNVRELFQTARDLAPVIIFVEDFDLFAGVRGQFIHTKQQDHESFINQLLVELDGFEKQD-GVVLMATTR 602 (979)
Q Consensus 524 L~~~~~vG~~~~~Ir~lF~~A~~~aP~ILfIDEIDaL~~~r~~~~~~~~~~~~~iln~LL~~LDg~~~~~-~ViVIATTN 602 (979)
.. . +. ..+.+.++ . -.+|+|||++.+.++ ......+-.++ +.....+ ..+++++++
T Consensus 84 ~~-~-~~----~~~~~~~~---~--~dlliiDdi~~~~~~---------~~~~~~lf~l~---n~~~e~g~~~li~ts~~ 140 (235)
T PRK08084 84 RA-W-FV----PEVLEGME---Q--LSLVCIDNIECIAGD---------ELWEMAIFDLY---NRILESGRTRLLITGDR 140 (235)
T ss_pred Hh-h-hh----HHHHHHhh---h--CCEEEEeChhhhcCC---------HHHHHHHHHHH---HHHHHcCCCeEEEeCCC
Confidence 42 1 11 11222222 1 268999999988432 11222222222 2221222 246666667
Q ss_pred chhh---chhhhhcCCcee--eEeccCCCCHHHHHHHHHHHHHhccchhhhhhhhHHHHHHHcCCCCHHHHHHHHHHHh
Q 035561 603 NIKQ---IDEALQRPGRMD--RIFNLQKPTQSEREKILRIAAQETMDEELIDLVDWRKVAEKTALLRPIELKLVPVALE 676 (979)
Q Consensus 603 ~pe~---LDpALlRpgRFd--~~I~~~~Pd~eeR~~IL~~~l~~~~~~~l~~dvdL~~LA~~T~GfsgaDL~~Lv~aa~ 676 (979)
.|.. +.|.|++ |+. ..+.+.+|+.+++.++++.++.... -..++.-++.|+++.+| +...+..++..+.
T Consensus 141 ~p~~l~~~~~~L~S--Rl~~g~~~~l~~~~~~~~~~~l~~~a~~~~--~~l~~~v~~~L~~~~~~-d~r~l~~~l~~l~ 214 (235)
T PRK08084 141 PPRQLNLGLPDLAS--RLDWGQIYKLQPLSDEEKLQALQLRARLRG--FELPEDVGRFLLKRLDR-EMRTLFMTLDQLD 214 (235)
T ss_pred ChHHcCcccHHHHH--HHhCCceeeecCCCHHHHHHHHHHHHHHcC--CCCCHHHHHHHHHhhcC-CHHHHHHHHHHHH
Confidence 7776 5799999 775 7899999999999999998776542 23455568889999887 4555555555444
No 114
>PRK08451 DNA polymerase III subunits gamma and tau; Validated
Probab=99.39 E-value=8.4e-12 Score=147.74 Aligned_cols=202 Identities=15% Similarity=0.184 Sum_probs=138.3
Q ss_pred CCCCCCCCcccCcHHHHHHHHHHHHhhcChhHHHhcCCCCCceeEecCCCCCChHHHHHHHHHHcCCC------------
Q 035561 448 KNPPIPLKDFASVESMREEINEVVAFLQNPSAFQEMGARAPRGVLIVGERGTGKTSLALAIAAEARVP------------ 515 (979)
Q Consensus 448 ~~~~~~f~DIvGleevke~L~eiV~~L~~p~~f~~lG~~~P~gVLL~GPPGTGKTtLArAlA~elg~~------------ 515 (979)
+++|.+|+|++|++.+++.|...+. ..+.|..+|||||||+|||++|+++|+.+..+
T Consensus 7 KyRP~~fdeiiGqe~v~~~L~~~I~-----------~grl~hayLf~Gp~G~GKTt~Ar~LAk~L~c~~~~~~~pC~~C~ 75 (535)
T PRK08451 7 KYRPKHFDELIGQESVSKTLSLALD-----------NNRLAHAYLFSGLRGSGKTSSARIFARALVCEQGPSSTPCDTCI 75 (535)
T ss_pred HHCCCCHHHccCcHHHHHHHHHHHH-----------cCCCCeeEEEECCCCCcHHHHHHHHHHHhcCCCCCCCCCCcccH
Confidence 5778999999999999999986653 12456678999999999999999999987421
Q ss_pred ------------EEEeechhhhhhhhcccchhhHHHHHHHHHhc----CCeEEEEcCccccccccccccCCCchhhHHHH
Q 035561 516 ------------VVNVEAQELEAGLWVGQSASNVRELFQTARDL----APVIIFVEDFDLFAGVRGQFIHTKQQDHESFI 579 (979)
Q Consensus 516 ------------~i~Is~sdL~~~~~vG~~~~~Ir~lF~~A~~~----aP~ILfIDEIDaL~~~r~~~~~~~~~~~~~il 579 (979)
++.+++++ ..+...+|++.+.+... ...|++|||+|.+ .....
T Consensus 76 ~C~~~~~~~h~dv~eldaas-------~~gId~IRelie~~~~~P~~~~~KVvIIDEad~L--------------t~~A~ 134 (535)
T PRK08451 76 QCQSALENRHIDIIEMDAAS-------NRGIDDIRELIEQTKYKPSMARFKIFIIDEVHML--------------TKEAF 134 (535)
T ss_pred HHHHHhhcCCCeEEEecccc-------ccCHHHHHHHHHHHhhCcccCCeEEEEEECcccC--------------CHHHH
Confidence 22222111 11235677766654321 2369999999987 23456
Q ss_pred HHHHhhhcccccCCeEEEEecccchhhchhhhhcCCceeeEeccCCCCHHHHHHHHHHHHHhccchhhhhhhhHHHHHHH
Q 035561 580 NQLLVELDGFEKQDGVVLMATTRNIKQIDEALQRPGRMDRIFNLQKPTQSEREKILRIAAQETMDEELIDLVDWRKVAEK 659 (979)
Q Consensus 580 n~LL~~LDg~~~~~~ViVIATTN~pe~LDpALlRpgRFd~~I~~~~Pd~eeR~~IL~~~l~~~~~~~l~~dvdL~~LA~~ 659 (979)
|.||..|+... +.+.+|.+|+.+..|.+++++ |. ..++|.+++.++....++..++..+ ...+...+..|++.
T Consensus 135 NALLK~LEEpp--~~t~FIL~ttd~~kL~~tI~S--Rc-~~~~F~~Ls~~ei~~~L~~Il~~EG--i~i~~~Al~~Ia~~ 207 (535)
T PRK08451 135 NALLKTLEEPP--SYVKFILATTDPLKLPATILS--RT-QHFRFKQIPQNSIISHLKTILEKEG--VSYEPEALEILARS 207 (535)
T ss_pred HHHHHHHhhcC--CceEEEEEECChhhCchHHHh--hc-eeEEcCCCCHHHHHHHHHHHHHHcC--CCCCHHHHHHHHHH
Confidence 78888888653 345555566778999999999 63 6899999999999999988887653 22345567888888
Q ss_pred cCCCCHHHHHHHHHHHhhhhhccCCCChHHHh
Q 035561 660 TALLRPIELKLVPVALEGSAFRSKFLDTDELM 691 (979)
Q Consensus 660 T~GfsgaDL~~Lv~aa~~aa~r~~~~s~~ei~ 691 (979)
+.| +..++.+++..+...+ ...++.+.+.
T Consensus 208 s~G-dlR~alnlLdqai~~~--~~~It~~~V~ 236 (535)
T PRK08451 208 GNG-SLRDTLTLLDQAIIYC--KNAITESKVA 236 (535)
T ss_pred cCC-cHHHHHHHHHHHHHhc--CCCCCHHHHH
Confidence 877 5555555553333222 3345554443
No 115
>PRK14953 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.39 E-value=7.2e-12 Score=147.71 Aligned_cols=210 Identities=16% Similarity=0.217 Sum_probs=135.7
Q ss_pred CCCCCCCCcccCcHHHHHHHHHHHHhhcChhHHHhcCCCCCceeEecCCCCCChHHHHHHHHHHcCC-------CEEE-e
Q 035561 448 KNPPIPLKDFASVESMREEINEVVAFLQNPSAFQEMGARAPRGVLIVGERGTGKTSLALAIAAEARV-------PVVN-V 519 (979)
Q Consensus 448 ~~~~~~f~DIvGleevke~L~eiV~~L~~p~~f~~lG~~~P~gVLL~GPPGTGKTtLArAlA~elg~-------~~i~-I 519 (979)
+++|.+|+|++|++.+.+.|+..+.. .+.+..+|||||||+|||++|+.+|+.+++ |+-. .
T Consensus 9 kyRP~~f~diiGq~~i~~~L~~~i~~-----------~~i~hayLf~Gp~G~GKTtlAr~lAk~L~c~~~~~~~pc~~c~ 77 (486)
T PRK14953 9 KYRPKFFKEVIGQEIVVRILKNAVKL-----------QRVSHAYIFAGPRGTGKTTIARILAKVLNCLNPQEGEPCGKCE 77 (486)
T ss_pred hhCCCcHHHccChHHHHHHHHHHHHc-----------CCCCeEEEEECCCCCCHHHHHHHHHHHhcCcCCCCCCCCCccH
Confidence 56788999999999999988866522 234556899999999999999999999864 1111 1
Q ss_pred echhhhhhhh---------cccchhhHHHHHHHHHh----cCCeEEEEcCccccccccccccCCCchhhHHHHHHHHhhh
Q 035561 520 EAQELEAGLW---------VGQSASNVRELFQTARD----LAPVIIFVEDFDLFAGVRGQFIHTKQQDHESFINQLLVEL 586 (979)
Q Consensus 520 s~sdL~~~~~---------vG~~~~~Ir~lF~~A~~----~aP~ILfIDEIDaL~~~r~~~~~~~~~~~~~iln~LL~~L 586 (979)
+|..+..+.+ ...+...+|.+.+.+.. ....|++|||+|.+. ....+.|+..|
T Consensus 78 nc~~i~~g~~~d~~eidaas~~gvd~ir~I~~~~~~~P~~~~~KVvIIDEad~Lt--------------~~a~naLLk~L 143 (486)
T PRK14953 78 NCVEIDKGSFPDLIEIDAASNRGIDDIRALRDAVSYTPIKGKYKVYIIDEAHMLT--------------KEAFNALLKTL 143 (486)
T ss_pred HHHHHhcCCCCcEEEEeCccCCCHHHHHHHHHHHHhCcccCCeeEEEEEChhhcC--------------HHHHHHHHHHH
Confidence 2222111000 11233446666666543 235799999999773 23456777777
Q ss_pred cccccCCeEEEEecccchhhchhhhhcCCceeeEeccCCCCHHHHHHHHHHHHHhccchhhhhhhhHHHHHHHcCCCCHH
Q 035561 587 DGFEKQDGVVLMATTRNIKQIDEALQRPGRMDRIFNLQKPTQSEREKILRIAAQETMDEELIDLVDWRKVAEKTALLRPI 666 (979)
Q Consensus 587 Dg~~~~~~ViVIATTN~pe~LDpALlRpgRFd~~I~~~~Pd~eeR~~IL~~~l~~~~~~~l~~dvdL~~LA~~T~Gfsga 666 (979)
+.. ...+++|.+|+.++.+++++++ |+ ..+.|++|+.++...+++..++... ...++..+..|+..+.| +..
T Consensus 144 Eep--p~~~v~Il~tt~~~kl~~tI~S--Rc-~~i~f~~ls~~el~~~L~~i~k~eg--i~id~~al~~La~~s~G-~lr 215 (486)
T PRK14953 144 EEP--PPRTIFILCTTEYDKIPPTILS--RC-QRFIFSKPTKEQIKEYLKRICNEEK--IEYEEKALDLLAQASEG-GMR 215 (486)
T ss_pred hcC--CCCeEEEEEECCHHHHHHHHHH--hc-eEEEcCCCCHHHHHHHHHHHHHHcC--CCCCHHHHHHHHHHcCC-CHH
Confidence 753 2344555556778889999988 65 4789999999999999999888653 12344557778888776 334
Q ss_pred HHHHHHHHHhhhhhccCCCChHHHhh
Q 035561 667 ELKLVPVALEGSAFRSKFLDTDELMS 692 (979)
Q Consensus 667 DL~~Lv~aa~~aa~r~~~~s~~ei~~ 692 (979)
++.+++..+.. .....++.+.+..
T Consensus 216 ~al~~Ldkl~~--~~~~~It~~~V~~ 239 (486)
T PRK14953 216 DAASLLDQAST--YGEGKVTIKVVEE 239 (486)
T ss_pred HHHHHHHHHHH--hcCCCcCHHHHHH
Confidence 44444333222 2233455554443
No 116
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=99.39 E-value=1.6e-11 Score=140.40 Aligned_cols=197 Identities=17% Similarity=0.167 Sum_probs=127.6
Q ss_pred CCCCCcccCcHHHHHHHHHHHHhhcChhHHHhcCCCCCceeEecCCCCCChHHHHHHHHHHc-----CCCEEEeechhhh
Q 035561 451 PIPLKDFASVESMREEINEVVAFLQNPSAFQEMGARAPRGVLIVGERGTGKTSLALAIAAEA-----RVPVVNVEAQELE 525 (979)
Q Consensus 451 ~~~f~DIvGleevke~L~eiV~~L~~p~~f~~lG~~~P~gVLL~GPPGTGKTtLArAlA~el-----g~~~i~Is~sdL~ 525 (979)
....+.++|-++..+.|...+.... ....|.+++|+||||||||++++.+++++ +..+++++|....
T Consensus 26 ~~~P~~l~~Re~e~~~l~~~l~~~~--------~~~~~~~~lI~G~~GtGKT~l~~~v~~~l~~~~~~~~~v~in~~~~~ 97 (394)
T PRK00411 26 DYVPENLPHREEQIEELAFALRPAL--------RGSRPLNVLIYGPPGTGKTTTVKKVFEELEEIAVKVVYVYINCQIDR 97 (394)
T ss_pred CCcCCCCCCHHHHHHHHHHHHHHHh--------CCCCCCeEEEECCCCCCHHHHHHHHHHHHHHhcCCcEEEEEECCcCC
Confidence 3455789999988787776653311 11345679999999999999999999887 5789999986432
Q ss_pred h---------hhhcc-------cc-hhhHHHHHHHHHh-cCCeEEEEcCccccccccccccCCCchhhHHHHHHHHhhhc
Q 035561 526 A---------GLWVG-------QS-ASNVRELFQTARD-LAPVIIFVEDFDLFAGVRGQFIHTKQQDHESFINQLLVELD 587 (979)
Q Consensus 526 ~---------~~~vG-------~~-~~~Ir~lF~~A~~-~aP~ILfIDEIDaL~~~r~~~~~~~~~~~~~iln~LL~~LD 587 (979)
+ ....+ .+ ...+..+.+.... ..+.||+|||+|.+.... ....+..|+..++
T Consensus 98 ~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~viviDE~d~l~~~~----------~~~~l~~l~~~~~ 167 (394)
T PRK00411 98 TRYAIFSEIARQLFGHPPPSSGLSFDELFDKIAEYLDERDRVLIVALDDINYLFEKE----------GNDVLYSLLRAHE 167 (394)
T ss_pred CHHHHHHHHHHHhcCCCCCCCCCCHHHHHHHHHHHHHhcCCEEEEEECCHhHhhccC----------CchHHHHHHHhhh
Confidence 1 01111 11 1122233333332 346899999999986211 1234566665555
Q ss_pred ccccCCeEEEEecccch---hhchhhhhcCCcee-eEeccCCCCHHHHHHHHHHHHHhccchhhhhhhhHHHHHHHcCCC
Q 035561 588 GFEKQDGVVLMATTRNI---KQIDEALQRPGRMD-RIFNLQKPTQSEREKILRIAAQETMDEELIDLVDWRKVAEKTALL 663 (979)
Q Consensus 588 g~~~~~~ViVIATTN~p---e~LDpALlRpgRFd-~~I~~~~Pd~eeR~~IL~~~l~~~~~~~l~~dvdL~~LA~~T~Gf 663 (979)
.... .++.+|+++|.+ +.+++.+.+ ||. ..|.|++++.++..+|++.+++........++..+..+++.+.+.
T Consensus 168 ~~~~-~~v~vI~i~~~~~~~~~l~~~~~s--~~~~~~i~f~py~~~e~~~il~~r~~~~~~~~~~~~~~l~~i~~~~~~~ 244 (394)
T PRK00411 168 EYPG-ARIGVIGISSDLTFLYILDPRVKS--VFRPEEIYFPPYTADEIFDILKDRVEEGFYPGVVDDEVLDLIADLTARE 244 (394)
T ss_pred ccCC-CeEEEEEEECCcchhhhcCHHHHh--cCCcceeecCCCCHHHHHHHHHHHHHhhcccCCCCHhHHHHHHHHHHHh
Confidence 4432 367788888874 457888877 553 578999999999999999988653222234455577788888554
Q ss_pred CHHHHH
Q 035561 664 RPIELK 669 (979)
Q Consensus 664 sgaDL~ 669 (979)
+| |+.
T Consensus 245 ~G-d~r 249 (394)
T PRK00411 245 HG-DAR 249 (394)
T ss_pred cC-cHH
Confidence 33 443
No 117
>PF05673 DUF815: Protein of unknown function (DUF815); InterPro: IPR008533 This domain consists of several bacterial proteins of unknown function.
Probab=99.39 E-value=1.7e-11 Score=131.40 Aligned_cols=162 Identities=28% Similarity=0.417 Sum_probs=119.8
Q ss_pred CCCCCCcccCcHHHHHHHHHHHHhhcChhHHHhcCCCCCceeEecCCCCCChHHHHHHHHHHc---CCCEEEeechhhhh
Q 035561 450 PPIPLKDFASVESMREEINEVVAFLQNPSAFQEMGARAPRGVLIVGERGTGKTSLALAIAAEA---RVPVVNVEAQELEA 526 (979)
Q Consensus 450 ~~~~f~DIvGleevke~L~eiV~~L~~p~~f~~lG~~~P~gVLL~GPPGTGKTtLArAlA~el---g~~~i~Is~sdL~~ 526 (979)
.++.+++++|.+..|+.|.+-...+ - ...+..++||+|++|||||+++|++..+. |..++.++..++.
T Consensus 22 ~~~~l~~L~Gie~Qk~~l~~Nt~~F------l--~G~pannvLL~G~rGtGKSSlVkall~~y~~~GLRlIev~k~~L~- 92 (249)
T PF05673_consen 22 DPIRLDDLIGIERQKEALIENTEQF------L--QGLPANNVLLWGARGTGKSSLVKALLNEYADQGLRLIEVSKEDLG- 92 (249)
T ss_pred CCCCHHHhcCHHHHHHHHHHHHHHH------H--cCCCCcceEEecCCCCCHHHHHHHHHHHHhhcCceEEEECHHHhc-
Confidence 4689999999999999998655432 1 23456889999999999999999999976 7889999988874
Q ss_pred hhhcccchhhHHHHHHHHHh-cCCeEEEEcCccccccccccccCCCchhhHHHHHHHHhhhccc--ccCCeEEEEecccc
Q 035561 527 GLWVGQSASNVRELFQTARD-LAPVIIFVEDFDLFAGVRGQFIHTKQQDHESFINQLLVELDGF--EKQDGVVLMATTRN 603 (979)
Q Consensus 527 ~~~vG~~~~~Ir~lF~~A~~-~aP~ILfIDEIDaL~~~r~~~~~~~~~~~~~iln~LL~~LDg~--~~~~~ViVIATTN~ 603 (979)
.+..+++..+. ..+-|||+|++. + +..+.....|-..|||- ...++|+|.||+|+
T Consensus 93 ---------~l~~l~~~l~~~~~kFIlf~DDLs-F------------e~~d~~yk~LKs~LeGgle~~P~NvliyATSNR 150 (249)
T PF05673_consen 93 ---------DLPELLDLLRDRPYKFILFCDDLS-F------------EEGDTEYKALKSVLEGGLEARPDNVLIYATSNR 150 (249)
T ss_pred ---------cHHHHHHHHhcCCCCEEEEecCCC-C------------CCCcHHHHHHHHHhcCccccCCCcEEEEEecch
Confidence 34556666553 246899999974 2 11122334555666763 34578999999999
Q ss_pred hhhchh---------------------hhhcCCceeeEeccCCCCHHHHHHHHHHHHHhc
Q 035561 604 IKQIDE---------------------ALQRPGRMDRIFNLQKPTQSEREKILRIAAQET 642 (979)
Q Consensus 604 pe~LDp---------------------ALlRpgRFd~~I~~~~Pd~eeR~~IL~~~l~~~ 642 (979)
-..++. .+--..||...|.|.+|+.++-.+|++.+++..
T Consensus 151 RHLv~E~~~d~~~~~~~eih~~d~~eEklSLsDRFGL~l~F~~~~q~~YL~IV~~~~~~~ 210 (249)
T PF05673_consen 151 RHLVPESFSDREDIQDDEIHPSDTIEEKLSLSDRFGLWLSFYPPDQEEYLAIVRHYAERY 210 (249)
T ss_pred hhccchhhhhccCCCccccCcchHHHHHHhHHHhCCcEEEecCCCHHHHHHHHHHHHHHc
Confidence 433322 111123999999999999999999999999754
No 118
>PRK06647 DNA polymerase III subunits gamma and tau; Validated
Probab=99.38 E-value=1e-11 Score=148.59 Aligned_cols=193 Identities=16% Similarity=0.193 Sum_probs=133.2
Q ss_pred CCCCCCCCcccCcHHHHHHHHHHHHhhcChhHHHhcCCCCCceeEecCCCCCChHHHHHHHHHHcCCC-------EEEe-
Q 035561 448 KNPPIPLKDFASVESMREEINEVVAFLQNPSAFQEMGARAPRGVLIVGERGTGKTSLALAIAAEARVP-------VVNV- 519 (979)
Q Consensus 448 ~~~~~~f~DIvGleevke~L~eiV~~L~~p~~f~~lG~~~P~gVLL~GPPGTGKTtLArAlA~elg~~-------~i~I- 519 (979)
+++|.+|+||+|++.+++.|+..+.. .+.|..+|||||||+|||++|+++|+.++.. .-.+
T Consensus 9 kyRP~~f~diiGqe~iv~~L~~~i~~-----------~~i~hayLf~Gp~G~GKTt~Ar~lAk~L~c~~~~~~~pC~~C~ 77 (563)
T PRK06647 9 KRRPRDFNSLEGQDFVVETLKHSIES-----------NKIANAYIFSGPRGVGKTSSARAFARCLNCVNGPTPMPCGECS 77 (563)
T ss_pred HhCCCCHHHccCcHHHHHHHHHHHHc-----------CCCCeEEEEECCCCCCHHHHHHHHHHhhccccCCCCCCCccch
Confidence 56788999999999999998866531 2345679999999999999999999998642 1111
Q ss_pred echhhhhhh------hcc---cchhhHHHHHHHHHh----cCCeEEEEcCccccccccccccCCCchhhHHHHHHHHhhh
Q 035561 520 EAQELEAGL------WVG---QSASNVRELFQTARD----LAPVIIFVEDFDLFAGVRGQFIHTKQQDHESFINQLLVEL 586 (979)
Q Consensus 520 s~sdL~~~~------~vG---~~~~~Ir~lF~~A~~----~aP~ILfIDEIDaL~~~r~~~~~~~~~~~~~iln~LL~~L 586 (979)
+|-.+..+. +.| .+...++++.+.+.. ....|++|||+|.+. ....|.||..|
T Consensus 78 ~C~~i~~~~~~dv~~idgas~~~vddIr~l~e~~~~~p~~~~~KVvIIDEa~~Ls--------------~~a~naLLK~L 143 (563)
T PRK06647 78 SCKSIDNDNSLDVIEIDGASNTSVQDVRQIKEEIMFPPASSRYRVYIIDEVHMLS--------------NSAFNALLKTI 143 (563)
T ss_pred HHHHHHcCCCCCeEEecCcccCCHHHHHHHHHHHHhchhcCCCEEEEEEChhhcC--------------HHHHHHHHHhh
Confidence 111111000 111 223456666555432 245799999999872 23567888888
Q ss_pred cccccCCeEEEEecccchhhchhhhhcCCceeeEeccCCCCHHHHHHHHHHHHHhccchhhhhhhhHHHHHHHcCCCCHH
Q 035561 587 DGFEKQDGVVLMATTRNIKQIDEALQRPGRMDRIFNLQKPTQSEREKILRIAAQETMDEELIDLVDWRKVAEKTALLRPI 666 (979)
Q Consensus 587 Dg~~~~~~ViVIATTN~pe~LDpALlRpgRFd~~I~~~~Pd~eeR~~IL~~~l~~~~~~~l~~dvdL~~LA~~T~Gfsga 666 (979)
+. ....+++|.+|+.+..|.++|++ |+ ..++|.+|+.++....++..++... ...++..+..||+.+.| +..
T Consensus 144 Ee--pp~~~vfI~~tte~~kL~~tI~S--Rc-~~~~f~~l~~~el~~~L~~i~~~eg--i~id~eAl~lLa~~s~G-dlR 215 (563)
T PRK06647 144 EE--PPPYIVFIFATTEVHKLPATIKS--RC-QHFNFRLLSLEKIYNMLKKVCLEDQ--IKYEDEALKWIAYKSTG-SVR 215 (563)
T ss_pred cc--CCCCEEEEEecCChHHhHHHHHH--hc-eEEEecCCCHHHHHHHHHHHHHHcC--CCCCHHHHHHHHHHcCC-CHH
Confidence 75 33456666666778999999998 65 4789999999999999998876542 22345667788888887 555
Q ss_pred HHHHHHH
Q 035561 667 ELKLVPV 673 (979)
Q Consensus 667 DL~~Lv~ 673 (979)
++.+++.
T Consensus 216 ~alslLd 222 (563)
T PRK06647 216 DAYTLFD 222 (563)
T ss_pred HHHHHHH
Confidence 5555544
No 119
>PRK06305 DNA polymerase III subunits gamma and tau; Validated
Probab=99.38 E-value=9.7e-12 Score=145.52 Aligned_cols=183 Identities=19% Similarity=0.259 Sum_probs=125.3
Q ss_pred CCCCCCCCcccCcHHHHHHHHHHHHhhcChhHHHhcCCCCCceeEecCCCCCChHHHHHHHHHHcCCCE---------EE
Q 035561 448 KNPPIPLKDFASVESMREEINEVVAFLQNPSAFQEMGARAPRGVLIVGERGTGKTSLALAIAAEARVPV---------VN 518 (979)
Q Consensus 448 ~~~~~~f~DIvGleevke~L~eiV~~L~~p~~f~~lG~~~P~gVLL~GPPGTGKTtLArAlA~elg~~~---------i~ 518 (979)
+.+|.+|+||+|++.+++.|...+.. .+.|..+|||||||+|||++|+++|+.+...- ..
T Consensus 10 kyRP~~~~diiGq~~~v~~L~~~i~~-----------~~i~ha~Lf~Gp~G~GKtt~A~~lAk~l~c~~~~~~~~~c~~c 78 (451)
T PRK06305 10 KYRPQTFSEILGQDAVVAVLKNALRF-----------NRAAHAYLFSGIRGTGKTTLARIFAKALNCQNPTEDQEPCNQC 78 (451)
T ss_pred HhCCCCHHHhcCcHHHHHHHHHHHHc-----------CCCceEEEEEcCCCCCHHHHHHHHHHHhcCCCcccCCCCCccc
Confidence 46778999999999999988866532 24567799999999999999999999885421 00
Q ss_pred eechhhhhh------hhcc---cchhhHHHHHHHHH----hcCCeEEEEcCccccccccccccCCCchhhHHHHHHHHhh
Q 035561 519 VEAQELEAG------LWVG---QSASNVRELFQTAR----DLAPVIIFVEDFDLFAGVRGQFIHTKQQDHESFINQLLVE 585 (979)
Q Consensus 519 Is~sdL~~~------~~vG---~~~~~Ir~lF~~A~----~~aP~ILfIDEIDaL~~~r~~~~~~~~~~~~~iln~LL~~ 585 (979)
.+|..+..+ .+.| .+...++.+-+... .....|++|||+|.+. ....+.|+..
T Consensus 79 ~~C~~i~~~~~~d~~~i~g~~~~gid~ir~i~~~l~~~~~~~~~kvvIIdead~lt--------------~~~~n~LLk~ 144 (451)
T PRK06305 79 ASCKEISSGTSLDVLEIDGASHRGIEDIRQINETVLFTPSKSRYKIYIIDEVHMLT--------------KEAFNSLLKT 144 (451)
T ss_pred HHHHHHhcCCCCceEEeeccccCCHHHHHHHHHHHHhhhhcCCCEEEEEecHHhhC--------------HHHHHHHHHH
Confidence 111111100 0111 12234554443332 1346899999999873 2346778888
Q ss_pred hcccccCCeEEEEecccchhhchhhhhcCCceeeEeccCCCCHHHHHHHHHHHHHhccchhhhhhhhHHHHHHHcCC
Q 035561 586 LDGFEKQDGVVLMATTRNIKQIDEALQRPGRMDRIFNLQKPTQSEREKILRIAAQETMDEELIDLVDWRKVAEKTAL 662 (979)
Q Consensus 586 LDg~~~~~~ViVIATTN~pe~LDpALlRpgRFd~~I~~~~Pd~eeR~~IL~~~l~~~~~~~l~~dvdL~~LA~~T~G 662 (979)
|+.. .+.+++|.+||.+..|.+++++ |+ ..++|+.++.++....++..++... ...+...+..|+..+.|
T Consensus 145 lEep--~~~~~~Il~t~~~~kl~~tI~s--Rc-~~v~f~~l~~~el~~~L~~~~~~eg--~~i~~~al~~L~~~s~g 214 (451)
T PRK06305 145 LEEP--PQHVKFFLATTEIHKIPGTILS--RC-QKMHLKRIPEETIIDKLALIAKQEG--IETSREALLPIARAAQG 214 (451)
T ss_pred hhcC--CCCceEEEEeCChHhcchHHHH--hc-eEEeCCCCCHHHHHHHHHHHHHHcC--CCCCHHHHHHHHHHcCC
Confidence 8763 3456666677888999999998 55 5789999999999999988876542 12345567788888876
No 120
>PRK14955 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.38 E-value=1.1e-11 Score=142.82 Aligned_cols=193 Identities=17% Similarity=0.244 Sum_probs=128.2
Q ss_pred CCCCCCCCcccCcHHHHHHHHHHHHhhcChhHHHhcCCCCCceeEecCCCCCChHHHHHHHHHHcCCCEE----------
Q 035561 448 KNPPIPLKDFASVESMREEINEVVAFLQNPSAFQEMGARAPRGVLIVGERGTGKTSLALAIAAEARVPVV---------- 517 (979)
Q Consensus 448 ~~~~~~f~DIvGleevke~L~eiV~~L~~p~~f~~lG~~~P~gVLL~GPPGTGKTtLArAlA~elg~~~i---------- 517 (979)
+.+|.+|++|+|++.+++.|+..+. ..+.|.++||+||||||||++|+++|+.+.+.-.
T Consensus 9 k~RP~~~~eiiGq~~~~~~L~~~~~-----------~~~~~ha~lf~Gp~G~GKtt~A~~~a~~l~c~~~~~~~~~~~~~ 77 (397)
T PRK14955 9 KYRPKKFADITAQEHITRTIQNSLR-----------MGRVGHGYIFSGLRGVGKTTAARVFAKAVNCQRMIDDADYLQEV 77 (397)
T ss_pred hcCCCcHhhccChHHHHHHHHHHHH-----------hCCcceeEEEECCCCCCHHHHHHHHHHHhcCCCCcCcccccccC
Confidence 5678899999999999998876553 2245677999999999999999999999866210
Q ss_pred Eeec------hhhhhh------hhcc---cchhhHHHHHHHHHh----cCCeEEEEcCccccccccccccCCCchhhHHH
Q 035561 518 NVEA------QELEAG------LWVG---QSASNVRELFQTARD----LAPVIIFVEDFDLFAGVRGQFIHTKQQDHESF 578 (979)
Q Consensus 518 ~Is~------sdL~~~------~~vG---~~~~~Ir~lF~~A~~----~aP~ILfIDEIDaL~~~r~~~~~~~~~~~~~i 578 (979)
.-.| ..+..+ .+.+ .+...++++.+.+.. ....|++|||+|.+. ...
T Consensus 78 ~~~c~~c~~c~~~~~~~~~n~~~~~~~~~~~id~Ir~l~~~~~~~p~~~~~kvvIIdea~~l~--------------~~~ 143 (397)
T PRK14955 78 TEPCGECESCRDFDAGTSLNISEFDAASNNSVDDIRLLRENVRYGPQKGRYRVYIIDEVHMLS--------------IAA 143 (397)
T ss_pred CCCCCCCHHHHHHhcCCCCCeEeecccccCCHHHHHHHHHHHhhchhcCCeEEEEEeChhhCC--------------HHH
Confidence 0111 111100 0111 123556666555532 123699999999873 224
Q ss_pred HHHHHhhhcccccCCeEEEEecccchhhchhhhhcCCceeeEeccCCCCHHHHHHHHHHHHHhccchhhhhhhhHHHHHH
Q 035561 579 INQLLVELDGFEKQDGVVLMATTRNIKQIDEALQRPGRMDRIFNLQKPTQSEREKILRIAAQETMDEELIDLVDWRKVAE 658 (979)
Q Consensus 579 ln~LL~~LDg~~~~~~ViVIATTN~pe~LDpALlRpgRFd~~I~~~~Pd~eeR~~IL~~~l~~~~~~~l~~dvdL~~LA~ 658 (979)
.+.|+..++.. .+..++|.+|+.+..+.+++++ |. ..++|++++.++....++..++... ...++..+..|+.
T Consensus 144 ~~~LLk~LEep--~~~t~~Il~t~~~~kl~~tl~s--R~-~~v~f~~l~~~ei~~~l~~~~~~~g--~~i~~~al~~l~~ 216 (397)
T PRK14955 144 FNAFLKTLEEP--PPHAIFIFATTELHKIPATIAS--RC-QRFNFKRIPLEEIQQQLQGICEAEG--ISVDADALQLIGR 216 (397)
T ss_pred HHHHHHHHhcC--CCCeEEEEEeCChHHhHHHHHH--HH-HHhhcCCCCHHHHHHHHHHHHHHcC--CCCCHHHHHHHHH
Confidence 55677777643 2344555555677888889988 55 4789999999999988888876542 2245556778888
Q ss_pred HcCCCCHHHHHHHHH
Q 035561 659 KTALLRPIELKLVPV 673 (979)
Q Consensus 659 ~T~GfsgaDL~~Lv~ 673 (979)
.+.| +...+.+.+.
T Consensus 217 ~s~g-~lr~a~~~L~ 230 (397)
T PRK14955 217 KAQG-SMRDAQSILD 230 (397)
T ss_pred HcCC-CHHHHHHHHH
Confidence 8876 3444444433
No 121
>PTZ00112 origin recognition complex 1 protein; Provisional
Probab=99.37 E-value=1.4e-11 Score=148.86 Aligned_cols=198 Identities=16% Similarity=0.171 Sum_probs=129.9
Q ss_pred CCCCCCCCcccCcHHHHHHHHHHHHhhcChhHHHhcCCCCCce-eEecCCCCCChHHHHHHHHHHc----------CCCE
Q 035561 448 KNPPIPLKDFASVESMREEINEVVAFLQNPSAFQEMGARAPRG-VLIVGERGTGKTSLALAIAAEA----------RVPV 516 (979)
Q Consensus 448 ~~~~~~f~DIvGleevke~L~eiV~~L~~p~~f~~lG~~~P~g-VLL~GPPGTGKTtLArAlA~el----------g~~~ 516 (979)
-.+...-+.|.|-++..++|..++..... | ..|.+ ++|+|+||||||++++.+.+++ .+.+
T Consensus 748 L~~DYVPD~LPhREeEIeeLasfL~paIk-------g-sgpnnvLYIyG~PGTGKTATVK~VLrELqeeaeqk~lp~f~v 819 (1164)
T PTZ00112 748 MQLDVVPKYLPCREKEIKEVHGFLESGIK-------Q-SGSNQILYISGMPGTGKTATVYSVIQLLQHKTKQKLLPSFNV 819 (1164)
T ss_pred cCcccCCCcCCChHHHHHHHHHHHHHHHh-------c-CCCCceEEEECCCCCCHHHHHHHHHHHHHHHHhhccCCCceE
Confidence 33444558899999888888877654211 2 22434 5699999999999999998776 2567
Q ss_pred EEeechhhhhhh---------h------cc-cchhhHHHHHHHHHh--cCCeEEEEcCccccccccccccCCCchhhHHH
Q 035561 517 VNVEAQELEAGL---------W------VG-QSASNVRELFQTARD--LAPVIIFVEDFDLFAGVRGQFIHTKQQDHESF 578 (979)
Q Consensus 517 i~Is~sdL~~~~---------~------vG-~~~~~Ir~lF~~A~~--~aP~ILfIDEIDaL~~~r~~~~~~~~~~~~~i 578 (979)
++|+|..+.... . .| .....+..+|..... ...+||+|||||.|... ...+
T Consensus 820 VYINCm~Lstp~sIYqvI~qqL~g~~P~~GlsS~evLerLF~~L~k~~r~v~IIILDEID~L~kK-----------~QDV 888 (1164)
T PTZ00112 820 FEINGMNVVHPNAAYQVLYKQLFNKKPPNALNSFKILDRLFNQNKKDNRNVSILIIDEIDYLITK-----------TQKV 888 (1164)
T ss_pred EEEeCCccCCHHHHHHHHHHHHcCCCCCccccHHHHHHHHHhhhhcccccceEEEeehHhhhCcc-----------HHHH
Confidence 899995532110 0 01 122345566665522 23579999999999532 1233
Q ss_pred HHHHHhhhcccccCCeEEEEecccc---hhhchhhhhcCCceee-EeccCCCCHHHHHHHHHHHHHhccchhhhhhhhHH
Q 035561 579 INQLLVELDGFEKQDGVVLMATTRN---IKQIDEALQRPGRMDR-IFNLQKPTQSEREKILRIAAQETMDEELIDLVDWR 654 (979)
Q Consensus 579 ln~LL~~LDg~~~~~~ViVIATTN~---pe~LDpALlRpgRFd~-~I~~~~Pd~eeR~~IL~~~l~~~~~~~l~~dvdL~ 654 (979)
+-.|+.... .....++|||++|. ++.|+|.+++ ||.. .+.|++++.+++.+||+..+... ....++..+.
T Consensus 889 LYnLFR~~~--~s~SKLiLIGISNdlDLperLdPRLRS--RLg~eeIvF~PYTaEQL~dILk~RAe~A--~gVLdDdAIE 962 (1164)
T PTZ00112 889 LFTLFDWPT--KINSKLVLIAISNTMDLPERLIPRCRS--RLAFGRLVFSPYKGDEIEKIIKERLENC--KEIIDHTAIQ 962 (1164)
T ss_pred HHHHHHHhh--ccCCeEEEEEecCchhcchhhhhhhhh--ccccccccCCCCCHHHHHHHHHHHHHhC--CCCCCHHHHH
Confidence 444443322 23457899999987 6678899988 6653 48899999999999999998753 1334455577
Q ss_pred HHHHHcCCCCHHHHHHH
Q 035561 655 KVAEKTALLRPIELKLV 671 (979)
Q Consensus 655 ~LA~~T~GfsgaDL~~L 671 (979)
.+|+.++..+ +|++..
T Consensus 963 LIArkVAq~S-GDARKA 978 (1164)
T PTZ00112 963 LCARKVANVS-GDIRKA 978 (1164)
T ss_pred HHHHhhhhcC-CHHHHH
Confidence 7777655433 455544
No 122
>PRK14948 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.37 E-value=1.8e-11 Score=147.97 Aligned_cols=183 Identities=19% Similarity=0.240 Sum_probs=128.0
Q ss_pred CCCCCCCCcccCcHHHHHHHHHHHHhhcChhHHHhcCCCCCceeEecCCCCCChHHHHHHHHHHcCCCEEE----eech-
Q 035561 448 KNPPIPLKDFASVESMREEINEVVAFLQNPSAFQEMGARAPRGVLIVGERGTGKTSLALAIAAEARVPVVN----VEAQ- 522 (979)
Q Consensus 448 ~~~~~~f~DIvGleevke~L~eiV~~L~~p~~f~~lG~~~P~gVLL~GPPGTGKTtLArAlA~elg~~~i~----Is~s- 522 (979)
++++.+|++++|++++++.|...+.. .+.+.++||+||||||||++|+++|+.+++.... -.|.
T Consensus 9 kyRP~~f~~liGq~~i~~~L~~~l~~-----------~rl~~a~Lf~Gp~G~GKttlA~~lAk~L~c~~~~~~~~~~Cg~ 77 (620)
T PRK14948 9 KYRPQRFDELVGQEAIATTLKNALIS-----------NRIAPAYLFTGPRGTGKTSSARILAKSLNCLNSDKPTPEPCGK 77 (620)
T ss_pred HhCCCcHhhccChHHHHHHHHHHHHc-----------CCCCceEEEECCCCCChHHHHHHHHHHhcCCCcCCCCCCCCcc
Confidence 56778999999999999999876642 1234579999999999999999999998753110 0111
Q ss_pred -----hhhh---------hhhcccchhhHHHHHHHHHhc----CCeEEEEcCccccccccccccCCCchhhHHHHHHHHh
Q 035561 523 -----ELEA---------GLWVGQSASNVRELFQTARDL----APVIIFVEDFDLFAGVRGQFIHTKQQDHESFINQLLV 584 (979)
Q Consensus 523 -----dL~~---------~~~vG~~~~~Ir~lF~~A~~~----aP~ILfIDEIDaL~~~r~~~~~~~~~~~~~iln~LL~ 584 (979)
.+.. ....+.+...+|++.+.+... ...|++|||+|.|. ....+.||+
T Consensus 78 C~~C~~i~~g~h~D~~ei~~~~~~~vd~IReii~~a~~~p~~~~~KViIIDEad~Lt--------------~~a~naLLK 143 (620)
T PRK14948 78 CELCRAIAAGNALDVIEIDAASNTGVDNIRELIERAQFAPVQARWKVYVIDECHMLS--------------TAAFNALLK 143 (620)
T ss_pred cHHHHHHhcCCCccEEEEeccccCCHHHHHHHHHHHhhChhcCCceEEEEECccccC--------------HHHHHHHHH
Confidence 0100 001224456788888777532 24799999999872 345678888
Q ss_pred hhcccccCCeEEEEecccchhhchhhhhcCCceeeEeccCCCCHHHHHHHHHHHHHhccchhhhhhhhHHHHHHHcCC
Q 035561 585 ELDGFEKQDGVVLMATTRNIKQIDEALQRPGRMDRIFNLQKPTQSEREKILRIAAQETMDEELIDLVDWRKVAEKTAL 662 (979)
Q Consensus 585 ~LDg~~~~~~ViVIATTN~pe~LDpALlRpgRFd~~I~~~~Pd~eeR~~IL~~~l~~~~~~~l~~dvdL~~LA~~T~G 662 (979)
.|+. ....+++|.+|++++.+.+.|++ |+ ..+.|+.++.++....++..+++.. ...+...+..+++.+.|
T Consensus 144 ~LEe--Pp~~tvfIL~t~~~~~llpTIrS--Rc-~~~~f~~l~~~ei~~~L~~ia~keg--i~is~~al~~La~~s~G 214 (620)
T PRK14948 144 TLEE--PPPRVVFVLATTDPQRVLPTIIS--RC-QRFDFRRIPLEAMVQHLSEIAEKES--IEIEPEALTLVAQRSQG 214 (620)
T ss_pred HHhc--CCcCeEEEEEeCChhhhhHHHHh--he-eEEEecCCCHHHHHHHHHHHHHHhC--CCCCHHHHHHHHHHcCC
Confidence 8875 33456666677788889999998 55 5788999999888888877766532 12233457788888876
No 123
>PRK12422 chromosomal replication initiation protein; Provisional
Probab=99.36 E-value=1.6e-11 Score=143.49 Aligned_cols=190 Identities=17% Similarity=0.222 Sum_probs=117.9
Q ss_pred CCCCCCCccc-CcHHH--HHHHHHHHHhhcChhHHHhcCCCCCceeEecCCCCCChHHHHHHHHHHc---CCCEEEeech
Q 035561 449 NPPIPLKDFA-SVESM--REEINEVVAFLQNPSAFQEMGARAPRGVLIVGERGTGKTSLALAIAAEA---RVPVVNVEAQ 522 (979)
Q Consensus 449 ~~~~~f~DIv-Gleev--ke~L~eiV~~L~~p~~f~~lG~~~P~gVLL~GPPGTGKTtLArAlA~el---g~~~i~Is~s 522 (979)
.+..+|++++ |.... ...++++. .++. ........+++||||||+|||+|++++++++ +..++++++.
T Consensus 105 ~~~~tFdnFv~g~~N~~a~~~a~~~a---~~~~---~~~~~~~npl~L~G~~G~GKTHLl~Ai~~~l~~~~~~v~yi~~~ 178 (445)
T PRK12422 105 DPLMTFANFLVTPENDLPHRILQEFT---KVSE---QGKGFPFNPIYLFGPEGSGKTHLMQAAVHALRESGGKILYVRSE 178 (445)
T ss_pred CccccccceeeCCcHHHHHHHHHHHH---hccc---cccCCCCceEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEeeHH
Confidence 5667999987 53322 12233222 1110 0011122569999999999999999999976 6889999988
Q ss_pred hhhhhhhcccchhhHHHHHHHHHhcCCeEEEEcCccccccccccccCCCchhhHHHHHHHHhhhcccccCCeEEEEeccc
Q 035561 523 ELEAGLWVGQSASNVRELFQTARDLAPVIIFVEDFDLFAGVRGQFIHTKQQDHESFINQLLVELDGFEKQDGVVLMATTR 602 (979)
Q Consensus 523 dL~~~~~vG~~~~~Ir~lF~~A~~~aP~ILfIDEIDaL~~~r~~~~~~~~~~~~~iln~LL~~LDg~~~~~~ViVIATTN 602 (979)
++. ..+.......-...|.... ..+.+|+|||++.+.++.. .+.+.-.++|.+. .....+|+++++
T Consensus 179 ~f~-~~~~~~l~~~~~~~f~~~~-~~~dvLiIDDiq~l~~k~~-----~qeelf~l~N~l~-------~~~k~IIlts~~ 244 (445)
T PRK12422 179 LFT-EHLVSAIRSGEMQRFRQFY-RNVDALFIEDIEVFSGKGA-----TQEEFFHTFNSLH-------TEGKLIVISSTC 244 (445)
T ss_pred HHH-HHHHHHHhcchHHHHHHHc-ccCCEEEEcchhhhcCChh-----hHHHHHHHHHHHH-------HCCCcEEEecCC
Confidence 775 2222111111112344332 2568999999998853211 1122223333332 223456666655
Q ss_pred chh---hchhhhhcCCcee--eEeccCCCCHHHHHHHHHHHHHhccchhhhhhhhHHHHHHHcCC
Q 035561 603 NIK---QIDEALQRPGRMD--RIFNLQKPTQSEREKILRIAAQETMDEELIDLVDWRKVAEKTAL 662 (979)
Q Consensus 603 ~pe---~LDpALlRpgRFd--~~I~~~~Pd~eeR~~IL~~~l~~~~~~~l~~dvdL~~LA~~T~G 662 (979)
.|. .+++.|++ ||. ..+.+++|+.++|..||+..++... ...++..+..||....+
T Consensus 245 ~p~~l~~l~~rL~S--R~~~Gl~~~l~~pd~e~r~~iL~~k~~~~~--~~l~~evl~~la~~~~~ 305 (445)
T PRK12422 245 APQDLKAMEERLIS--RFEWGIAIPLHPLTKEGLRSFLERKAEALS--IRIEETALDFLIEALSS 305 (445)
T ss_pred CHHHHhhhHHHHHh--hhcCCeEEecCCCCHHHHHHHHHHHHHHcC--CCCCHHHHHHHHHhcCC
Confidence 565 46789998 885 7899999999999999999887652 23445557778887775
No 124
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=99.35 E-value=1.8e-11 Score=151.09 Aligned_cols=194 Identities=19% Similarity=0.215 Sum_probs=131.2
Q ss_pred CcccCcHHHHHHHHHHHHhhcChhHHHhcCCC---CCc-eeEecCCCCCChHHHHHHHHHHcCCCEEEeechhhhhh---
Q 035561 455 KDFASVESMREEINEVVAFLQNPSAFQEMGAR---APR-GVLIVGERGTGKTSLALAIAAEARVPVVNVEAQELEAG--- 527 (979)
Q Consensus 455 ~DIvGleevke~L~eiV~~L~~p~~f~~lG~~---~P~-gVLL~GPPGTGKTtLArAlA~elg~~~i~Is~sdL~~~--- 527 (979)
+.|+|++++++.+.+.+... ..|+. .|. ++||+||||||||++|+++|..++.+++.++++++...
T Consensus 454 ~~v~GQ~~ai~~l~~~i~~~-------~~g~~~~~~p~~~~lf~Gp~GvGKT~lA~~la~~l~~~~~~~d~se~~~~~~~ 526 (731)
T TIGR02639 454 AKIFGQDEAIDSLVSSIKRS-------RAGLGNPNKPVGSFLFTGPTGVGKTELAKQLAEALGVHLERFDMSEYMEKHTV 526 (731)
T ss_pred cceeCcHHHHHHHHHHHHHH-------hcCCCCCCCCceeEEEECCCCccHHHHHHHHHHHhcCCeEEEeCchhhhcccH
Confidence 35788888888777665432 22332 344 48999999999999999999999999999999886421
Q ss_pred -h-------hcccchhhHHHHHHHHHhcCCeEEEEcCccccccccccccCCCchhhHHHHHHHHhhhccc--c-------
Q 035561 528 -L-------WVGQSASNVRELFQTARDLAPVIIFVEDFDLFAGVRGQFIHTKQQDHESFINQLLVELDGF--E------- 590 (979)
Q Consensus 528 -~-------~vG~~~~~Ir~lF~~A~~~aP~ILfIDEIDaL~~~r~~~~~~~~~~~~~iln~LL~~LDg~--~------- 590 (979)
. |+|... ...+.+..+.+..+||+|||+|.+ +..+.+.|++.||+- .
T Consensus 527 ~~lig~~~gyvg~~~--~~~l~~~~~~~p~~VvllDEieka--------------~~~~~~~Ll~~ld~g~~~d~~g~~v 590 (731)
T TIGR02639 527 SRLIGAPPGYVGFEQ--GGLLTEAVRKHPHCVLLLDEIEKA--------------HPDIYNILLQVMDYATLTDNNGRKA 590 (731)
T ss_pred HHHhcCCCCCcccch--hhHHHHHHHhCCCeEEEEechhhc--------------CHHHHHHHHHhhccCeeecCCCccc
Confidence 1 222221 222344445556799999999976 345667777777652 1
Q ss_pred cCCeEEEEecccchh-------------------------hchhhhhcCCceeeEeccCCCCHHHHHHHHHHHHHhccc-
Q 035561 591 KQDGVVLMATTRNIK-------------------------QIDEALQRPGRMDRIFNLQKPTQSEREKILRIAAQETMD- 644 (979)
Q Consensus 591 ~~~~ViVIATTN~pe-------------------------~LDpALlRpgRFd~~I~~~~Pd~eeR~~IL~~~l~~~~~- 644 (979)
.-.++++|+|||... .+.|.|+. |||.+|.|.+.+.++..+|++..+++...
T Consensus 591 d~~~~iii~Tsn~g~~~~~~~~~~f~~~~~~~~~~~~~~~~f~pef~~--Rid~Vi~F~pLs~e~l~~Iv~~~L~~l~~~ 668 (731)
T TIGR02639 591 DFRNVILIMTSNAGASEMSKPPIGFGSENVESKSDKAIKKLFSPEFRN--RLDAIIHFNPLSEEVLEKIVQKFVDELSKQ 668 (731)
T ss_pred CCCCCEEEECCCcchhhhhhccCCcchhhhHHHHHHHHHhhcChHHHh--cCCeEEEcCCCCHHHHHHHHHHHHHHHHHH
Confidence 123578888988731 24677777 99999999999999999999998874311
Q ss_pred ------hhhhhhhhHHHHHHH--cCCCCHHHHHHHHH
Q 035561 645 ------EELIDLVDWRKVAEK--TALLRPIELKLVPV 673 (979)
Q Consensus 645 ------~~l~~dvdL~~LA~~--T~GfsgaDL~~Lv~ 673 (979)
.-..++..++.|++. .+.+....|+.+++
T Consensus 669 l~~~~~~l~i~~~a~~~La~~~~~~~~GaR~l~r~i~ 705 (731)
T TIGR02639 669 LNEKNIKLELTDDAKKYLAEKGYDEEFGARPLARVIQ 705 (731)
T ss_pred HHhCCCeEEeCHHHHHHHHHhCCCcccCchHHHHHHH
Confidence 011233445556654 34455566665543
No 125
>PRK14954 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.35 E-value=3.6e-11 Score=144.99 Aligned_cols=190 Identities=18% Similarity=0.261 Sum_probs=128.3
Q ss_pred CCCCCCCCcccCcHHHHHHHHHHHHhhcChhHHHhcCCCCCceeEecCCCCCChHHHHHHHHHHcCCCEEE---------
Q 035561 448 KNPPIPLKDFASVESMREEINEVVAFLQNPSAFQEMGARAPRGVLIVGERGTGKTSLALAIAAEARVPVVN--------- 518 (979)
Q Consensus 448 ~~~~~~f~DIvGleevke~L~eiV~~L~~p~~f~~lG~~~P~gVLL~GPPGTGKTtLArAlA~elg~~~i~--------- 518 (979)
+++|.+|++|+|++.+++.|+..+. ..+.|.++||+||||||||++|+++|+.+++.--.
T Consensus 9 kyRP~~f~eivGQe~i~~~L~~~i~-----------~~ri~ha~Lf~Gp~GvGKttlA~~lAk~L~c~~~~~~~~~~~~~ 77 (620)
T PRK14954 9 KYRPSKFADITAQEHITHTIQNSLR-----------MDRVGHGYIFSGLRGVGKTTAARVFAKAVNCQRMIDDPVYLQEV 77 (620)
T ss_pred HHCCCCHHHhcCcHHHHHHHHHHHH-----------cCCCCeeEEEECCCCCCHHHHHHHHHHHhCCCCcCCcccccccc
Confidence 5678899999999999999886442 22556789999999999999999999999762100
Q ss_pred -ee------chhhhhh------hhcc---cchhhHHHHHHHHHh----cCCeEEEEcCccccccccccccCCCchhhHHH
Q 035561 519 -VE------AQELEAG------LWVG---QSASNVRELFQTARD----LAPVIIFVEDFDLFAGVRGQFIHTKQQDHESF 578 (979)
Q Consensus 519 -Is------~sdL~~~------~~vG---~~~~~Ir~lF~~A~~----~aP~ILfIDEIDaL~~~r~~~~~~~~~~~~~i 578 (979)
-. |..+..+ .+.| .+...++++.+.+.. ....|++|||+|.+. ...
T Consensus 78 ~~~Cg~C~sC~~~~~g~~~n~~~~d~~s~~~vd~Ir~l~e~~~~~P~~~~~KVvIIdEad~Lt--------------~~a 143 (620)
T PRK14954 78 TEPCGECESCRDFDAGTSLNISEFDAASNNSVDDIRQLRENVRYGPQKGRYRVYIIDEVHMLS--------------TAA 143 (620)
T ss_pred CCCCccCHHHHHHhccCCCCeEEecccccCCHHHHHHHHHHHHhhhhcCCCEEEEEeChhhcC--------------HHH
Confidence 01 1111100 0112 123466666655532 234799999999873 234
Q ss_pred HHHHHhhhcccccCCeEEEEecccchhhchhhhhcCCceeeEeccCCCCHHHHHHHHHHHHHhccchhhhhhhhHHHHHH
Q 035561 579 INQLLVELDGFEKQDGVVLMATTRNIKQIDEALQRPGRMDRIFNLQKPTQSEREKILRIAAQETMDEELIDLVDWRKVAE 658 (979)
Q Consensus 579 ln~LL~~LDg~~~~~~ViVIATTN~pe~LDpALlRpgRFd~~I~~~~Pd~eeR~~IL~~~l~~~~~~~l~~dvdL~~LA~ 658 (979)
.|.||..|+.... .+++|.+|+.+..|.+.+++.| ..++|..++.++....++..++... ...++..+..|+.
T Consensus 144 ~naLLK~LEePp~--~tv~IL~t~~~~kLl~TI~SRc---~~vef~~l~~~ei~~~L~~i~~~eg--i~I~~eal~~La~ 216 (620)
T PRK14954 144 FNAFLKTLEEPPP--HAIFIFATTELHKIPATIASRC---QRFNFKRIPLDEIQSQLQMICRAEG--IQIDADALQLIAR 216 (620)
T ss_pred HHHHHHHHhCCCC--CeEEEEEeCChhhhhHHHHhhc---eEEecCCCCHHHHHHHHHHHHHHcC--CCCCHHHHHHHHH
Confidence 6778888876432 3444445566789999998844 6899999999999988888776532 2245556788888
Q ss_pred HcCCCCHHHHHH
Q 035561 659 KTALLRPIELKL 670 (979)
Q Consensus 659 ~T~GfsgaDL~~ 670 (979)
.+.| +..++.+
T Consensus 217 ~s~G-dlr~al~ 227 (620)
T PRK14954 217 KAQG-SMRDAQS 227 (620)
T ss_pred HhCC-CHHHHHH
Confidence 8877 3333333
No 126
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=99.34 E-value=7.7e-12 Score=153.80 Aligned_cols=163 Identities=17% Similarity=0.260 Sum_probs=117.0
Q ss_pred cccCcHHHHHHHHHHHHhhcChhHHHhcCC---CCC-ceeEecCCCCCChHHHHHHHHHHcCCCEEEeechhhhh----h
Q 035561 456 DFASVESMREEINEVVAFLQNPSAFQEMGA---RAP-RGVLIVGERGTGKTSLALAIAAEARVPVVNVEAQELEA----G 527 (979)
Q Consensus 456 DIvGleevke~L~eiV~~L~~p~~f~~lG~---~~P-~gVLL~GPPGTGKTtLArAlA~elg~~~i~Is~sdL~~----~ 527 (979)
.|+|++++++.|.+.+...+. |+ ..| .++||+||||||||++|+++|..++.+++.++|+++.. .
T Consensus 459 ~ViGQ~~ai~~l~~~i~~~~~-------gl~~~~kp~~~~Lf~GP~GvGKT~lAk~LA~~l~~~~i~id~se~~~~~~~~ 531 (758)
T PRK11034 459 LVFGQDKAIEALTEAIKMSRA-------GLGHEHKPVGSFLFAGPTGVGKTEVTVQLSKALGIELLRFDMSEYMERHTVS 531 (758)
T ss_pred eEeCcHHHHHHHHHHHHHHhc-------cccCCCCCcceEEEECCCCCCHHHHHHHHHHHhCCCcEEeechhhcccccHH
Confidence 489999999999887754321 22 234 46999999999999999999999999999999988742 1
Q ss_pred hhcccchhh-----HHHHHHHHHhcCCeEEEEcCccccccccccccCCCchhhHHHHHHHHhhhccc--cc-------CC
Q 035561 528 LWVGQSASN-----VRELFQTARDLAPVIIFVEDFDLFAGVRGQFIHTKQQDHESFINQLLVELDGF--EK-------QD 593 (979)
Q Consensus 528 ~~vG~~~~~-----Ir~lF~~A~~~aP~ILfIDEIDaL~~~r~~~~~~~~~~~~~iln~LL~~LDg~--~~-------~~ 593 (979)
...|..... -..+.+..+.+..|||||||+|.+ +..+.+.|++.||.- .. -.
T Consensus 532 ~LiG~~~gyvg~~~~g~L~~~v~~~p~sVlllDEieka--------------~~~v~~~LLq~ld~G~ltd~~g~~vd~r 597 (758)
T PRK11034 532 RLIGAPPGYVGFDQGGLLTDAVIKHPHAVLLLDEIEKA--------------HPDVFNLLLQVMDNGTLTDNNGRKADFR 597 (758)
T ss_pred HHcCCCCCcccccccchHHHHHHhCCCcEEEeccHhhh--------------hHHHHHHHHHHHhcCeeecCCCceecCC
Confidence 122211111 112233334555699999999977 344677777777631 11 14
Q ss_pred eEEEEecccch-------------------------hhchhhhhcCCceeeEeccCCCCHHHHHHHHHHHHHh
Q 035561 594 GVVLMATTRNI-------------------------KQIDEALQRPGRMDRIFNLQKPTQSEREKILRIAAQE 641 (979)
Q Consensus 594 ~ViVIATTN~p-------------------------e~LDpALlRpgRFd~~I~~~~Pd~eeR~~IL~~~l~~ 641 (979)
++++|+|||.- ..+.|.|+. |+|.+|.|++++.++..+|+...+..
T Consensus 598 n~iiI~TsN~g~~~~~~~~~g~~~~~~~~~~~~~~~~~f~pefl~--Rid~ii~f~~L~~~~l~~I~~~~l~~ 668 (758)
T PRK11034 598 NVVLVMTTNAGVRETERKSIGLIHQDNSTDAMEEIKKIFTPEFRN--RLDNIIWFDHLSTDVIHQVVDKFIVE 668 (758)
T ss_pred CcEEEEeCCcCHHHHhhcccCcccchhhHHHHHHHHHhcCHHHHc--cCCEEEEcCCCCHHHHHHHHHHHHHH
Confidence 67899999931 125678888 99999999999999999999888764
No 127
>PRK05642 DNA replication initiation factor; Validated
Probab=99.34 E-value=5.5e-11 Score=127.85 Aligned_cols=166 Identities=15% Similarity=0.221 Sum_probs=112.5
Q ss_pred CceeEecCCCCCChHHHHHHHHHHc---CCCEEEeechhhhhhhhcccchhhHHHHHHHHHhcCCeEEEEcCcccccccc
Q 035561 488 PRGVLIVGERGTGKTSLALAIAAEA---RVPVVNVEAQELEAGLWVGQSASNVRELFQTARDLAPVIIFVEDFDLFAGVR 564 (979)
Q Consensus 488 P~gVLL~GPPGTGKTtLArAlA~el---g~~~i~Is~sdL~~~~~vG~~~~~Ir~lF~~A~~~aP~ILfIDEIDaL~~~r 564 (979)
...++||||+|||||+|++++|+++ +..+++++..++.. . ...+.+.... ..+|+|||++.+.++.
T Consensus 45 ~~~l~l~G~~G~GKTHLl~a~~~~~~~~~~~v~y~~~~~~~~-~--------~~~~~~~~~~--~d~LiiDDi~~~~~~~ 113 (234)
T PRK05642 45 ESLIYLWGKDGVGRSHLLQAACLRFEQRGEPAVYLPLAELLD-R--------GPELLDNLEQ--YELVCLDDLDVIAGKA 113 (234)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEeeHHHHHh-h--------hHHHHHhhhh--CCEEEEechhhhcCCh
Confidence 3679999999999999999999764 67889999988752 1 1122222322 2589999999874321
Q ss_pred ccccCCCchhhHHHHHHHHhhhcccccCCeEEEEecccchhhc---hhhhhcCCcee--eEeccCCCCHHHHHHHHHHHH
Q 035561 565 GQFIHTKQQDHESFINQLLVELDGFEKQDGVVLMATTRNIKQI---DEALQRPGRMD--RIFNLQKPTQSEREKILRIAA 639 (979)
Q Consensus 565 ~~~~~~~~~~~~~iln~LL~~LDg~~~~~~ViVIATTN~pe~L---DpALlRpgRFd--~~I~~~~Pd~eeR~~IL~~~l 639 (979)
.....|+..++.+...+..+|++++..|..+ .|.|++ ||. ..+.+.+|+.++|..+++..+
T Consensus 114 ------------~~~~~Lf~l~n~~~~~g~~ilits~~~p~~l~~~~~~L~S--Rl~~gl~~~l~~~~~e~~~~il~~ka 179 (234)
T PRK05642 114 ------------DWEEALFHLFNRLRDSGRRLLLAASKSPRELPIKLPDLKS--RLTLALVFQMRGLSDEDKLRALQLRA 179 (234)
T ss_pred ------------HHHHHHHHHHHHHHhcCCEEEEeCCCCHHHcCccCccHHH--HHhcCeeeecCCCCHHHHHHHHHHHH
Confidence 1122344444444444566777777776544 688988 874 678899999999999999766
Q ss_pred HhccchhhhhhhhHHHHHHHcCCCCHHHHHHHHHHHhhhhhc
Q 035561 640 QETMDEELIDLVDWRKVAEKTALLRPIELKLVPVALEGSAFR 681 (979)
Q Consensus 640 ~~~~~~~l~~dvdL~~LA~~T~GfsgaDL~~Lv~aa~~aa~r 681 (979)
.... -..++.-++.|+++.++ +.+.+..++..+...++.
T Consensus 180 ~~~~--~~l~~ev~~~L~~~~~~-d~r~l~~~l~~l~~~~l~ 218 (234)
T PRK05642 180 SRRG--LHLTDEVGHFILTRGTR-SMSALFDLLERLDQASLQ 218 (234)
T ss_pred HHcC--CCCCHHHHHHHHHhcCC-CHHHHHHHHHHHHHHHHH
Confidence 5532 22445567888888887 556666666555444443
No 128
>PRK14950 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.33 E-value=4.4e-11 Score=144.27 Aligned_cols=195 Identities=15% Similarity=0.221 Sum_probs=130.5
Q ss_pred CCCCCCCCcccCcHHHHHHHHHHHHhhcChhHHHhcCCCCCceeEecCCCCCChHHHHHHHHHHcCCCEEE---ee----
Q 035561 448 KNPPIPLKDFASVESMREEINEVVAFLQNPSAFQEMGARAPRGVLIVGERGTGKTSLALAIAAEARVPVVN---VE---- 520 (979)
Q Consensus 448 ~~~~~~f~DIvGleevke~L~eiV~~L~~p~~f~~lG~~~P~gVLL~GPPGTGKTtLArAlA~elg~~~i~---Is---- 520 (979)
++++.+|+||+|++.+++.|+..+.. .+.+..+|||||||||||++|+++|+.+++..-. ..
T Consensus 9 kyRP~~~~eiiGq~~~~~~L~~~i~~-----------~~i~~a~Lf~Gp~G~GKTtlA~~lA~~l~c~~~~~~~~~c~~c 77 (585)
T PRK14950 9 KWRSQTFAELVGQEHVVQTLRNAIAE-----------GRVAHAYLFTGPRGVGKTSTARILAKAVNCTTNDPKGRPCGTC 77 (585)
T ss_pred HhCCCCHHHhcCCHHHHHHHHHHHHh-----------CCCceEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCccC
Confidence 56788999999999999998865532 1345668999999999999999999998642210 01
Q ss_pred --chhhhhhhh---------cccchhhHHHHHHHHHh----cCCeEEEEcCccccccccccccCCCchhhHHHHHHHHhh
Q 035561 521 --AQELEAGLW---------VGQSASNVRELFQTARD----LAPVIIFVEDFDLFAGVRGQFIHTKQQDHESFINQLLVE 585 (979)
Q Consensus 521 --~sdL~~~~~---------vG~~~~~Ir~lF~~A~~----~aP~ILfIDEIDaL~~~r~~~~~~~~~~~~~iln~LL~~ 585 (979)
|..+..+.. ...+...+|++.+.+.. ....|++|||+|.|. ....+.||+.
T Consensus 78 ~~c~~i~~~~~~d~~~i~~~~~~~vd~ir~ii~~~~~~p~~~~~kVvIIDEa~~L~--------------~~a~naLLk~ 143 (585)
T PRK14950 78 EMCRAIAEGSAVDVIEMDAASHTSVDDAREIIERVQFRPALARYKVYIIDEVHMLS--------------TAAFNALLKT 143 (585)
T ss_pred HHHHHHhcCCCCeEEEEeccccCCHHHHHHHHHHHhhCcccCCeEEEEEeChHhCC--------------HHHHHHHHHH
Confidence 111110000 01223445665554432 234799999999772 2446778888
Q ss_pred hcccccCCeEEEEecccchhhchhhhhcCCceeeEeccCCCCHHHHHHHHHHHHHhccchhhhhhhhHHHHHHHcCCCCH
Q 035561 586 LDGFEKQDGVVLMATTRNIKQIDEALQRPGRMDRIFNLQKPTQSEREKILRIAAQETMDEELIDLVDWRKVAEKTALLRP 665 (979)
Q Consensus 586 LDg~~~~~~ViVIATTN~pe~LDpALlRpgRFd~~I~~~~Pd~eeR~~IL~~~l~~~~~~~l~~dvdL~~LA~~T~Gfsg 665 (979)
|+... ..+++|.+|+.++.+.+.+++ |+ ..+.|+.++..+...+++..++... ...+...+..|++.+.| +.
T Consensus 144 LEepp--~~tv~Il~t~~~~kll~tI~S--R~-~~i~f~~l~~~el~~~L~~~a~~eg--l~i~~eal~~La~~s~G-dl 215 (585)
T PRK14950 144 LEEPP--PHAIFILATTEVHKVPATILS--RC-QRFDFHRHSVADMAAHLRKIAAAEG--INLEPGALEAIARAATG-SM 215 (585)
T ss_pred HhcCC--CCeEEEEEeCChhhhhHHHHh--cc-ceeeCCCCCHHHHHHHHHHHHHHcC--CCCCHHHHHHHHHHcCC-CH
Confidence 77643 345555566777888888988 55 4788999999999999988876542 12344457788888877 56
Q ss_pred HHHHHHHHHH
Q 035561 666 IELKLVPVAL 675 (979)
Q Consensus 666 aDL~~Lv~aa 675 (979)
.++.+....+
T Consensus 216 r~al~~LekL 225 (585)
T PRK14950 216 RDAENLLQQL 225 (585)
T ss_pred HHHHHHHHHH
Confidence 5655554443
No 129
>PRK08727 hypothetical protein; Validated
Probab=99.33 E-value=5.2e-11 Score=127.89 Aligned_cols=175 Identities=18% Similarity=0.223 Sum_probs=111.7
Q ss_pred CCCCCCCcccCcHH-HHHHHHHHHHhhcChhHHHhcCCCCCceeEecCCCCCChHHHHHHHHHHc---CCCEEEeechhh
Q 035561 449 NPPIPLKDFASVES-MREEINEVVAFLQNPSAFQEMGARAPRGVLIVGERGTGKTSLALAIAAEA---RVPVVNVEAQEL 524 (979)
Q Consensus 449 ~~~~~f~DIvGlee-vke~L~eiV~~L~~p~~f~~lG~~~P~gVLL~GPPGTGKTtLArAlA~el---g~~~i~Is~sdL 524 (979)
.+..+|+++++-++ ....+... .. | .....++|+||+|||||+|+++++.++ +..+.+++..++
T Consensus 13 ~~~~~f~~f~~~~~n~~~~~~~~---~~--------~-~~~~~l~l~G~~G~GKThL~~a~~~~~~~~~~~~~y~~~~~~ 80 (233)
T PRK08727 13 PSDQRFDSYIAAPDGLLAQLQAL---AA--------G-QSSDWLYLSGPAGTGKTHLALALCAAAEQAGRSSAYLPLQAA 80 (233)
T ss_pred CCcCChhhccCCcHHHHHHHHHH---Hh--------c-cCCCeEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEEeHHHh
Confidence 44568999876554 22222211 10 1 123459999999999999999998775 667777777664
Q ss_pred hhhhhcccchhhHHHHHHHHHhcCCeEEEEcCccccccccccccCCCchhhHHHHHHHHhhhcccccCCeEEEEecccch
Q 035561 525 EAGLWVGQSASNVRELFQTARDLAPVIIFVEDFDLFAGVRGQFIHTKQQDHESFINQLLVELDGFEKQDGVVLMATTRNI 604 (979)
Q Consensus 525 ~~~~~vG~~~~~Ir~lF~~A~~~aP~ILfIDEIDaL~~~r~~~~~~~~~~~~~iln~LL~~LDg~~~~~~ViVIATTN~p 604 (979)
. . .+.+.++... ...+|+|||++.+.... .... .++..++.......-+|+++.+.|
T Consensus 81 ~-~--------~~~~~~~~l~--~~dlLiIDDi~~l~~~~---------~~~~---~lf~l~n~~~~~~~~vI~ts~~~p 137 (233)
T PRK08727 81 A-G--------RLRDALEALE--GRSLVALDGLESIAGQR---------EDEV---ALFDFHNRARAAGITLLYTARQMP 137 (233)
T ss_pred h-h--------hHHHHHHHHh--cCCEEEEeCcccccCCh---------HHHH---HHHHHHHHHHHcCCeEEEECCCCh
Confidence 3 1 2333444433 45799999999875321 1122 222333332222333555555567
Q ss_pred hhc---hhhhhcCCce--eeEeccCCCCHHHHHHHHHHHHHhccchhhhhhhhHHHHHHHcCC
Q 035561 605 KQI---DEALQRPGRM--DRIFNLQKPTQSEREKILRIAAQETMDEELIDLVDWRKVAEKTAL 662 (979)
Q Consensus 605 e~L---DpALlRpgRF--d~~I~~~~Pd~eeR~~IL~~~l~~~~~~~l~~dvdL~~LA~~T~G 662 (979)
..+ +|.|++ || ...+.+++|+.++|.+|++.++.... -..++..+..|+++++|
T Consensus 138 ~~l~~~~~dL~S--Rl~~~~~~~l~~~~~e~~~~iL~~~a~~~~--l~l~~e~~~~La~~~~r 196 (233)
T PRK08727 138 DGLALVLPDLRS--RLAQCIRIGLPVLDDVARAAVLRERAQRRG--LALDEAAIDWLLTHGER 196 (233)
T ss_pred hhhhhhhHHHHH--HHhcCceEEecCCCHHHHHHHHHHHHHHcC--CCCCHHHHHHHHHhCCC
Confidence 765 789998 76 46899999999999999998776542 23455677889999886
No 130
>TIGR01650 PD_CobS cobaltochelatase, CobS subunit. This model describes the aerobic cobalamin pathway Pseudomonas denitrificans CobS gene product, which is a cobalt chelatase subunit, with a MW ~37 kDa. The aerobic pathway cobalt chelatase is a heterotrimeric, ATP-dependent enzyme that catalyzes cobalt insertion during cobalamin biosynthesis. The other two subunits are the P. denitrificans CobT (TIGR01651) and CobN (pfam02514 CobN/Magnesium Chelatase) proteins. To avoid potential confusion with the nonhomologous Salmonella typhimurium/E.coli cobS gene product, the P. denitrificans gene symbol is not used in the name of this model.
Probab=99.31 E-value=1.5e-11 Score=137.38 Aligned_cols=139 Identities=24% Similarity=0.266 Sum_probs=99.7
Q ss_pred CceeEecCCCCCChHHHHHHHHHHcCCCEEEeechhhhhh-hhcccchhh----------HHHHHHHHHhcCCeEEEEcC
Q 035561 488 PRGVLIVGERGTGKTSLALAIAAEARVPVVNVEAQELEAG-LWVGQSASN----------VRELFQTARDLAPVIIFVED 556 (979)
Q Consensus 488 P~gVLL~GPPGTGKTtLArAlA~elg~~~i~Is~sdL~~~-~~vG~~~~~----------Ir~lF~~A~~~aP~ILfIDE 556 (979)
.++|||.||||||||++|+.+|+.++.+++.++++..... ...|...-. ....+..|.. .+++|++||
T Consensus 64 ~~~ilL~G~pGtGKTtla~~lA~~l~~~~~rV~~~~~l~~~DliG~~~~~l~~g~~~~~f~~GpL~~A~~-~g~illlDE 142 (327)
T TIGR01650 64 DRRVMVQGYHGTGKSTHIEQIAARLNWPCVRVNLDSHVSRIDLVGKDAIVLKDGKQITEFRDGILPWALQ-HNVALCFDE 142 (327)
T ss_pred CCcEEEEeCCCChHHHHHHHHHHHHCCCeEEEEecCCCChhhcCCCceeeccCCcceeEEecCcchhHHh-CCeEEEech
Confidence 4679999999999999999999999999999998755422 134432111 1123444443 679999999
Q ss_pred ccccccccccccCCCchhhHHHHHHHHhh-----hcc----cccCCeEEEEecccchh------------hchhhhhcCC
Q 035561 557 FDLFAGVRGQFIHTKQQDHESFINQLLVE-----LDG----FEKQDGVVLMATTRNIK------------QIDEALQRPG 615 (979)
Q Consensus 557 IDaL~~~r~~~~~~~~~~~~~iln~LL~~-----LDg----~~~~~~ViVIATTN~pe------------~LDpALlRpg 615 (979)
+|..- ......++.+|.. +++ +...+.+.||||+|..+ .+++|++.
T Consensus 143 in~a~-----------p~~~~~L~~lLE~~~~l~i~~~~~~i~~hp~FrviAT~Np~g~Gd~~G~y~Gt~~l~~A~lD-- 209 (327)
T TIGR01650 143 YDAGR-----------PDVMFVIQRVLEAGGKLTLLDQNRVIRAHPAFRLFATANTIGLGDTTGLYHGTQQINQAQMD-- 209 (327)
T ss_pred hhccC-----------HHHHHHHHHHhccCCeEEECCCceEecCCCCeEEEEeeCCCCcCCCCcceeeeecCCHHHHh--
Confidence 99662 2233444445442 111 23445789999999854 46899999
Q ss_pred ceeeEeccCCCCHHHHHHHHHHHHH
Q 035561 616 RMDRIFNLQKPTQSEREKILRIAAQ 640 (979)
Q Consensus 616 RFd~~I~~~~Pd~eeR~~IL~~~l~ 640 (979)
||-..+.++.|+.++-.+|+.....
T Consensus 210 RF~i~~~~~Yp~~e~E~~Il~~~~~ 234 (327)
T TIGR01650 210 RWSIVTTLNYLEHDNEAAIVLAKAK 234 (327)
T ss_pred heeeEeeCCCCCHHHHHHHHHhhcc
Confidence 9988899999999999999987653
No 131
>PRK14086 dnaA chromosomal replication initiation protein; Provisional
Probab=99.31 E-value=3.2e-11 Score=143.98 Aligned_cols=202 Identities=21% Similarity=0.278 Sum_probs=124.5
Q ss_pred CCCCCCCcccCcHHHHHHHHHHHHhhcChhHHHhcCCCCCceeEecCCCCCChHHHHHHHHHHc-----CCCEEEeechh
Q 035561 449 NPPIPLKDFASVESMREEINEVVAFLQNPSAFQEMGARAPRGVLIVGERGTGKTSLALAIAAEA-----RVPVVNVEAQE 523 (979)
Q Consensus 449 ~~~~~f~DIvGleevke~L~eiV~~L~~p~~f~~lG~~~P~gVLL~GPPGTGKTtLArAlA~el-----g~~~i~Is~sd 523 (979)
.+..+|++++.-+.-............++ + .....++|||++|||||+|++++|+++ +..++++++.+
T Consensus 282 ~~~~TFDnFvvG~sN~~A~aaa~avae~~------~-~~~NpL~LyG~sGsGKTHLL~AIa~~a~~~~~g~~V~Yitaee 354 (617)
T PRK14086 282 NPKYTFDTFVIGASNRFAHAAAVAVAEAP------A-KAYNPLFIYGESGLGKTHLLHAIGHYARRLYPGTRVRYVSSEE 354 (617)
T ss_pred CCCCCHhhhcCCCccHHHHHHHHHHHhCc------c-ccCCcEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEeeHHH
Confidence 45678999874333221221112112221 1 112349999999999999999999986 56889999988
Q ss_pred hhhhhhcccchhhHHHHHHHHHhcCCeEEEEcCccccccccccccCCCchhhHHHHHHHHhhhcccccCCeEEEEecccc
Q 035561 524 LEAGLWVGQSASNVRELFQTARDLAPVIIFVEDFDLFAGVRGQFIHTKQQDHESFINQLLVELDGFEKQDGVVLMATTRN 603 (979)
Q Consensus 524 L~~~~~vG~~~~~Ir~lF~~A~~~aP~ILfIDEIDaL~~~r~~~~~~~~~~~~~iln~LL~~LDg~~~~~~ViVIATTN~ 603 (979)
|. ..+.........+.|.... ..+.+|+||||+.+.++.. .. ..|+..++.+...+..+||++...
T Consensus 355 f~-~el~~al~~~~~~~f~~~y-~~~DLLlIDDIq~l~gke~---------tq---eeLF~l~N~l~e~gk~IIITSd~~ 420 (617)
T PRK14086 355 FT-NEFINSIRDGKGDSFRRRY-REMDILLVDDIQFLEDKES---------TQ---EEFFHTFNTLHNANKQIVLSSDRP 420 (617)
T ss_pred HH-HHHHHHHHhccHHHHHHHh-hcCCEEEEehhccccCCHH---------HH---HHHHHHHHHHHhcCCCEEEecCCC
Confidence 86 3333322222222344332 2578999999998854321 11 223333333323333455544444
Q ss_pred hh---hchhhhhcCCcee--eEeccCCCCHHHHHHHHHHHHHhccchhhhhhhhHHHHHHHcCCCCHHHHHHHHHHHh
Q 035561 604 IK---QIDEALQRPGRMD--RIFNLQKPTQSEREKILRIAAQETMDEELIDLVDWRKVAEKTALLRPIELKLVPVALE 676 (979)
Q Consensus 604 pe---~LDpALlRpgRFd--~~I~~~~Pd~eeR~~IL~~~l~~~~~~~l~~dvdL~~LA~~T~GfsgaDL~~Lv~aa~ 676 (979)
|. .+++.|++ ||. ..+.+..||.+.|.+||+.++.... ...++.-+..|+.+..+ +..+|..++..+.
T Consensus 421 P~eL~~l~~rL~S--Rf~~GLvv~I~~PD~EtR~aIL~kka~~r~--l~l~~eVi~yLa~r~~r-nvR~LegaL~rL~ 493 (617)
T PRK14086 421 PKQLVTLEDRLRN--RFEWGLITDVQPPELETRIAILRKKAVQEQ--LNAPPEVLEFIASRISR-NIRELEGALIRVT 493 (617)
T ss_pred hHhhhhccHHHHh--hhhcCceEEcCCCCHHHHHHHHHHHHHhcC--CCCCHHHHHHHHHhccC-CHHHHHHHHHHHH
Confidence 44 46889999 774 6789999999999999999988653 23345567888888776 4556665554443
No 132
>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication. DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.
Probab=99.31 E-value=3.1e-11 Score=128.60 Aligned_cols=197 Identities=22% Similarity=0.307 Sum_probs=117.3
Q ss_pred CCCCCCCccc-Cc--HHHHHHHHHHHHhhcChhHHHhcCCCCCceeEecCCCCCChHHHHHHHHHHc-----CCCEEEee
Q 035561 449 NPPIPLKDFA-SV--ESMREEINEVVAFLQNPSAFQEMGARAPRGVLIVGERGTGKTSLALAIAAEA-----RVPVVNVE 520 (979)
Q Consensus 449 ~~~~~f~DIv-Gl--eevke~L~eiV~~L~~p~~f~~lG~~~P~gVLL~GPPGTGKTtLArAlA~el-----g~~~i~Is 520 (979)
+|..+|++++ |. +.+....+.+. .++ +. .-..++||||+|+|||+|++|+++++ +..+++++
T Consensus 2 n~~~tFdnfv~g~~N~~a~~~~~~ia---~~~------~~-~~~~l~l~G~~G~GKTHLL~Ai~~~~~~~~~~~~v~y~~ 71 (219)
T PF00308_consen 2 NPKYTFDNFVVGESNELAYAAAKAIA---ENP------GE-RYNPLFLYGPSGLGKTHLLQAIANEAQKQHPGKRVVYLS 71 (219)
T ss_dssp -TT-SCCCS--TTTTHHHHHHHHHHH---HST------TT-SSSEEEEEESTTSSHHHHHHHHHHHHHHHCTTS-EEEEE
T ss_pred CCCCccccCCcCCcHHHHHHHHHHHH---hcC------CC-CCCceEEECCCCCCHHHHHHHHHHHHHhccccccceeec
Confidence 3567899986 42 22333333222 222 11 12348999999999999999999875 57899999
Q ss_pred chhhhhhhhcccc-hhhHHHHHHHHHhcCCeEEEEcCccccccccccccCCCchhhHHHHHHHHhhhcccccCCeEEEEe
Q 035561 521 AQELEAGLWVGQS-ASNVRELFQTARDLAPVIIFVEDFDLFAGVRGQFIHTKQQDHESFINQLLVELDGFEKQDGVVLMA 599 (979)
Q Consensus 521 ~sdL~~~~~vG~~-~~~Ir~lF~~A~~~aP~ILfIDEIDaL~~~r~~~~~~~~~~~~~iln~LL~~LDg~~~~~~ViVIA 599 (979)
+.++.. .+.... ...+.++.+..+ ...+|+||+++.+.++ ..+...|...++.+...++.+|++
T Consensus 72 ~~~f~~-~~~~~~~~~~~~~~~~~~~--~~DlL~iDDi~~l~~~------------~~~q~~lf~l~n~~~~~~k~li~t 136 (219)
T PF00308_consen 72 AEEFIR-EFADALRDGEIEEFKDRLR--SADLLIIDDIQFLAGK------------QRTQEELFHLFNRLIESGKQLILT 136 (219)
T ss_dssp HHHHHH-HHHHHHHTTSHHHHHHHHC--TSSEEEEETGGGGTTH------------HHHHHHHHHHHHHHHHTTSEEEEE
T ss_pred HHHHHH-HHHHHHHcccchhhhhhhh--cCCEEEEecchhhcCc------------hHHHHHHHHHHHHHHhhCCeEEEE
Confidence 988862 222211 122222222222 4579999999988532 223345555555554555566776
Q ss_pred cccchhh---chhhhhcCCcee--eEeccCCCCHHHHHHHHHHHHHhccchhhhhhhhHHHHHHHcCCCCHHHHHHHHHH
Q 035561 600 TTRNIKQ---IDEALQRPGRMD--RIFNLQKPTQSEREKILRIAAQETMDEELIDLVDWRKVAEKTALLRPIELKLVPVA 674 (979)
Q Consensus 600 TTN~pe~---LDpALlRpgRFd--~~I~~~~Pd~eeR~~IL~~~l~~~~~~~l~~dvdL~~LA~~T~GfsgaDL~~Lv~a 674 (979)
+...|.. +++.|.+ ||. ..+.+.+|+.++|.+|++..+..... ..++.-+..|+++.++ +..+|..++..
T Consensus 137 s~~~P~~l~~~~~~L~S--Rl~~Gl~~~l~~pd~~~r~~il~~~a~~~~~--~l~~~v~~~l~~~~~~-~~r~L~~~l~~ 211 (219)
T PF00308_consen 137 SDRPPSELSGLLPDLRS--RLSWGLVVELQPPDDEDRRRILQKKAKERGI--ELPEEVIEYLARRFRR-DVRELEGALNR 211 (219)
T ss_dssp ESS-TTTTTTS-HHHHH--HHHCSEEEEE----HHHHHHHHHHHHHHTT----S-HHHHHHHHHHTTS-SHHHHHHHHHH
T ss_pred eCCCCccccccChhhhh--hHhhcchhhcCCCCHHHHHHHHHHHHHHhCC--CCcHHHHHHHHHhhcC-CHHHHHHHHHH
Confidence 6666665 4678877 766 48999999999999999999887642 2344456778888765 55566655444
Q ss_pred H
Q 035561 675 L 675 (979)
Q Consensus 675 a 675 (979)
+
T Consensus 212 l 212 (219)
T PF00308_consen 212 L 212 (219)
T ss_dssp H
T ss_pred H
Confidence 3
No 133
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=99.29 E-value=3e-11 Score=115.34 Aligned_cols=121 Identities=32% Similarity=0.496 Sum_probs=81.5
Q ss_pred CCceeEecCCCCCChHHHHHHHHHHc---CCCEEEeechhhhhhhhcccchhh---HHHHHHHHHhcCCeEEEEcCcccc
Q 035561 487 APRGVLIVGERGTGKTSLALAIAAEA---RVPVVNVEAQELEAGLWVGQSASN---VRELFQTARDLAPVIIFVEDFDLF 560 (979)
Q Consensus 487 ~P~gVLL~GPPGTGKTtLArAlA~el---g~~~i~Is~sdL~~~~~vG~~~~~---Ir~lF~~A~~~aP~ILfIDEIDaL 560 (979)
.+.+++++||||||||++++.+++.+ +.+++.+++.+..... ....... ....+..+....+++|+|||++.+
T Consensus 18 ~~~~v~i~G~~G~GKT~l~~~i~~~~~~~~~~v~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~lilDe~~~~ 96 (151)
T cd00009 18 PPKNLLLYGPPGTGKTTLARAIANELFRPGAPFLYLNASDLLEGL-VVAELFGHFLVRLLFELAEKAKPGVLFIDEIDSL 96 (151)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHhhcCCCCeEEEehhhhhhhh-HHHHHhhhhhHhHHHHhhccCCCeEEEEeChhhh
Confidence 45679999999999999999999998 8999999998765221 1111111 112233344556899999999976
Q ss_pred ccccccccCCCchhhHHHHHHHHhhhccccc----CCeEEEEecccchh--hchhhhhcCCceeeEeccC
Q 035561 561 AGVRGQFIHTKQQDHESFINQLLVELDGFEK----QDGVVLMATTRNIK--QIDEALQRPGRMDRIFNLQ 624 (979)
Q Consensus 561 ~~~r~~~~~~~~~~~~~iln~LL~~LDg~~~----~~~ViVIATTN~pe--~LDpALlRpgRFd~~I~~~ 624 (979)
.. .....++..+..+.. ..++.+|++||... .+++.+.+ ||+..+.++
T Consensus 97 ~~--------------~~~~~~~~~i~~~~~~~~~~~~~~ii~~~~~~~~~~~~~~~~~--r~~~~i~~~ 150 (151)
T cd00009 97 SR--------------GAQNALLRVLETLNDLRIDRENVRVIGATNRPLLGDLDRALYD--RLDIRIVIP 150 (151)
T ss_pred hH--------------HHHHHHHHHHHhcCceeccCCCeEEEEecCccccCCcChhHHh--hhccEeecC
Confidence 21 112233333333322 35678888888876 78888888 998888776
No 134
>PRK14087 dnaA chromosomal replication initiation protein; Provisional
Probab=99.29 E-value=6.8e-11 Score=138.44 Aligned_cols=205 Identities=14% Similarity=0.154 Sum_probs=126.0
Q ss_pred CCCCCcccCcHHHHHHHHHHHHhhcChhHHHhcCCCCCceeEecCCCCCChHHHHHHHHHHc-----CCCEEEeechhhh
Q 035561 451 PIPLKDFASVESMREEINEVVAFLQNPSAFQEMGARAPRGVLIVGERGTGKTSLALAIAAEA-----RVPVVNVEAQELE 525 (979)
Q Consensus 451 ~~~f~DIvGleevke~L~eiV~~L~~p~~f~~lG~~~P~gVLL~GPPGTGKTtLArAlA~el-----g~~~i~Is~sdL~ 525 (979)
+.+|++++.-+.-...+........+| |. ...+++|||++|||||+|++++++++ +..++++++.++.
T Consensus 111 ~~tFdnFv~g~~n~~A~~aa~~~a~~~------~~-~~npl~i~G~~G~GKTHLl~Ai~~~l~~~~~~~~v~yv~~~~f~ 183 (450)
T PRK14087 111 ENTFENFVIGSSNEQAFIAVQTVSKNP------GI-SYNPLFIYGESGMGKTHLLKAAKNYIESNFSDLKVSYMSGDEFA 183 (450)
T ss_pred ccchhcccCCCcHHHHHHHHHHHHhCc------Cc-ccCceEEECCCCCcHHHHHHHHHHHHHHhCCCCeEEEEEHHHHH
Confidence 468999773332222232222222222 21 22469999999999999999999965 4788999998886
Q ss_pred hhhhcccch---hhHHHHHHHHHhcCCeEEEEcCccccccccccccCCCchhhHHHHHHHHhhhcccccCCeEEEEeccc
Q 035561 526 AGLWVGQSA---SNVRELFQTARDLAPVIIFVEDFDLFAGVRGQFIHTKQQDHESFINQLLVELDGFEKQDGVVLMATTR 602 (979)
Q Consensus 526 ~~~~vG~~~---~~Ir~lF~~A~~~aP~ILfIDEIDaL~~~r~~~~~~~~~~~~~iln~LL~~LDg~~~~~~ViVIATTN 602 (979)
..+..... ..+....+.. ..+.+|+|||++.+.++. .+...|...++........+|+++..
T Consensus 184 -~~~~~~l~~~~~~~~~~~~~~--~~~dvLiIDDiq~l~~k~------------~~~e~lf~l~N~~~~~~k~iIltsd~ 248 (450)
T PRK14087 184 -RKAVDILQKTHKEIEQFKNEI--CQNDVLIIDDVQFLSYKE------------KTNEIFFTIFNNFIENDKQLFFSSDK 248 (450)
T ss_pred -HHHHHHHHHhhhHHHHHHHHh--ccCCEEEEeccccccCCH------------HHHHHHHHHHHHHHHcCCcEEEECCC
Confidence 33332211 1122111111 246799999999884321 12223333333332333445555555
Q ss_pred chhh---chhhhhcCCcee--eEeccCCCCHHHHHHHHHHHHHhccchhhhhhhhHHHHHHHcCCCCHHHHHHHHHHHhh
Q 035561 603 NIKQ---IDEALQRPGRMD--RIFNLQKPTQSEREKILRIAAQETMDEELIDLVDWRKVAEKTALLRPIELKLVPVALEG 677 (979)
Q Consensus 603 ~pe~---LDpALlRpgRFd--~~I~~~~Pd~eeR~~IL~~~l~~~~~~~l~~dvdL~~LA~~T~GfsgaDL~~Lv~aa~~ 677 (979)
.|+. +++.|.+ ||. ..+.+.+|+.++|.+||+..++........++..+..||..+.| ++..|..++..+..
T Consensus 249 ~P~~l~~l~~rL~S--R~~~Gl~~~L~~pd~e~r~~iL~~~~~~~gl~~~l~~evl~~Ia~~~~g-d~R~L~gaL~~l~~ 325 (450)
T PRK14087 249 SPELLNGFDNRLIT--RFNMGLSIAIQKLDNKTATAIIKKEIKNQNIKQEVTEEAINFISNYYSD-DVRKIKGSVSRLNF 325 (450)
T ss_pred CHHHHhhccHHHHH--HHhCCceeccCCcCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHccCC-CHHHHHHHHHHHHH
Confidence 5654 4788888 875 67899999999999999999986431113455567888998888 66677777665554
Q ss_pred hhh
Q 035561 678 SAF 680 (979)
Q Consensus 678 aa~ 680 (979)
.+.
T Consensus 326 ~a~ 328 (450)
T PRK14087 326 WSQ 328 (450)
T ss_pred HHh
Confidence 443
No 135
>CHL00081 chlI Mg-protoporyphyrin IX chelatase
Probab=99.28 E-value=4.1e-11 Score=135.52 Aligned_cols=253 Identities=16% Similarity=0.204 Sum_probs=143.2
Q ss_pred CCCCCCCCcccCcHHHHHHHHHHHHhhcChhHHHhcCCCCCceeEecCCCCCChHHHHHHHHHHcC-------CCEEEee
Q 035561 448 KNPPIPLKDFASVESMREEINEVVAFLQNPSAFQEMGARAPRGVLIVGERGTGKTSLALAIAAEAR-------VPVVNVE 520 (979)
Q Consensus 448 ~~~~~~f~DIvGleevke~L~eiV~~L~~p~~f~~lG~~~P~gVLL~GPPGTGKTtLArAlA~elg-------~~~i~Is 520 (979)
..+..+|++|+|++++|..|.... .+ +...|+||.|++|||||++||+++..+. .||. .+
T Consensus 10 ~~~~~pf~~ivGq~~~k~al~~~~---~~---------p~~~~vli~G~~GtGKs~~ar~~~~~l~~~~~~~~~pf~-~~ 76 (350)
T CHL00081 10 ERPVFPFTAIVGQEEMKLALILNV---ID---------PKIGGVMIMGDRGTGKSTTIRALVDLLPEIEVVKDDPFN-SH 76 (350)
T ss_pred cCCCCCHHHHhChHHHHHHHHHhc---cC---------CCCCeEEEEcCCCCCHHHHHHHHHHHHhhcCccCCCCCC-CC
Confidence 355678999999999999886322 12 2336899999999999999999988762 2332 11
Q ss_pred c-------hhhhhh--------------hh----cccchhhH------HHHHHHHH---------hcCCeEEEEcCcccc
Q 035561 521 A-------QELEAG--------------LW----VGQSASNV------RELFQTAR---------DLAPVIIFVEDFDLF 560 (979)
Q Consensus 521 ~-------sdL~~~--------------~~----vG~~~~~I------r~lF~~A~---------~~aP~ILfIDEIDaL 560 (979)
. +++... .+ .|.++.++ ...|.... ....++||+||++.+
T Consensus 77 p~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~~ted~l~G~iD~~~al~~g~~~~~~GlL~~A~~GiL~lDEInrL 156 (350)
T CHL00081 77 PSDPELMSDEVREAIQNGETIETEKIKIPMVDLPLGATEDRVCGTIDIEKALTEGVKAFEPGLLAKANRGILYVDEVNLL 156 (350)
T ss_pred CCChhhhchhhhhhhcccccccceeccccceecCCCCchhhccCcccHHHHhhcCcccccCCeeeecCCCEEEecChHhC
Confidence 0 111100 00 12222221 11222221 112489999999987
Q ss_pred ccccccccCCCchhhHHHHHHHHhhhcc---------c--ccCCeEEEEecccchh-hchhhhhcCCceeeEeccCCCC-
Q 035561 561 AGVRGQFIHTKQQDHESFINQLLVELDG---------F--EKQDGVVLMATTRNIK-QIDEALQRPGRMDRIFNLQKPT- 627 (979)
Q Consensus 561 ~~~r~~~~~~~~~~~~~iln~LL~~LDg---------~--~~~~~ViVIATTN~pe-~LDpALlRpgRFd~~I~~~~Pd- 627 (979)
. ..+.+.|+..|+. . ....++++++|.|..+ .++++++. ||...+.+..|+
T Consensus 157 ~--------------~~~Q~~LLeam~e~~~~ier~G~s~~~p~rfiviaT~np~eg~l~~~Lld--Rf~l~i~l~~~~~ 220 (350)
T CHL00081 157 D--------------DHLVDILLDSAASGWNTVEREGISIRHPARFVLVGSGNPEEGELRPQLLD--RFGMHAEIRTVKD 220 (350)
T ss_pred C--------------HHHHHHHHHHHHhCCeEEeeCCeeeecCCCEEEEeccCcccCCCCHHHHH--HhCceeecCCCCC
Confidence 3 2233445555532 1 1124578888888655 69999999 999999999997
Q ss_pred HHHHHHHHHHHHHhccchhhhhhhhHHHHHHHcCCCCHHHHHHHHHHHhhhhhccCCCChHHHhhhcchhhhccCCCccc
Q 035561 628 QSEREKILRIAAQETMDEELIDLVDWRKVAEKTALLRPIELKLVPVALEGSAFRSKFLDTDELMSYCGWFATFSGVVPKW 707 (979)
Q Consensus 628 ~eeR~~IL~~~l~~~~~~~l~~dvdL~~LA~~T~GfsgaDL~~Lv~aa~~aa~r~~~~s~~ei~~~~d~~aAl~~~~P~~ 707 (979)
.+.+.+|++........ + .......... .-.+..+|...-.. ++.-.++.+.+.-.+++..+... .+
T Consensus 221 ~~~e~~il~~~~~~~~~-~---~~~~~~~~~~-~~~~~~~I~~ar~~-----~~~V~v~~~~~~yi~~l~~~~~~---~s 287 (350)
T CHL00081 221 PELRVKIVEQRTSFDKN-P---QEFREKYEES-QEELRSKIVAAQNL-----LPKVEIDYDLRVKISQICSELDV---DG 287 (350)
T ss_pred hHHHHHHHHhhhccccC-h---hhhhhhhccc-cccCHHHHHHHHHh-----cCCCccCHHHHHHHHHHHHHHCC---CC
Confidence 69999999986431100 0 0001111111 11244555544222 22223344333333444443322 23
Q ss_pred cccchhhhhhhhhhhhh-cCccccHHHHHHHHHhhh
Q 035561 708 FRKTKIVKKISRMLVDH-LGLTLTKEDLQNVVDLME 742 (979)
Q Consensus 708 lR~~~llk~~~v~w~Di-GGl~vtkedL~eAIe~~~ 742 (979)
.|..-.+.+.++.++-. |.-.++.+|++.+...+.
T Consensus 288 ~Ra~i~l~raArA~Aal~GR~~V~pdDv~~~a~~vL 323 (350)
T CHL00081 288 LRGDIVTNRAAKALAAFEGRTEVTPKDIFKVITLCL 323 (350)
T ss_pred ChHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHH
Confidence 45555555555555544 445788999998887543
No 136
>TIGR02903 spore_lon_C ATP-dependent protease, Lon family. Members of this protein family resemble the widely distributed ATP-dependent protease La, also called Lon and LonA. It resembles even more closely LonB, which is a LonA paralog found in genomes if and only if the species is capable of endospore formation (as in Bacillus subtilis, Clostridium tetani, and select other members of the Firmicutes) and expressed specifically in the forespore compartment. Members of this family are restricted to a subset of spore-forming species, and are very likely to participate in the program of endospore formation. We propose the designation LonC.
Probab=99.28 E-value=1.3e-10 Score=140.85 Aligned_cols=165 Identities=23% Similarity=0.300 Sum_probs=105.7
Q ss_pred CCCCCCCcccCcHHHHHHHHHHHHhhcChhHHHhcCCCCCceeEecCCCCCChHHHHHHHHHHc----------CCCEEE
Q 035561 449 NPPIPLKDFASVESMREEINEVVAFLQNPSAFQEMGARAPRGVLIVGERGTGKTSLALAIAAEA----------RVPVVN 518 (979)
Q Consensus 449 ~~~~~f~DIvGleevke~L~eiV~~L~~p~~f~~lG~~~P~gVLL~GPPGTGKTtLArAlA~el----------g~~~i~ 518 (979)
.++.+|++++|++...+.+...+ ....|.+++|+|||||||||+|+++++.. +.+|+.
T Consensus 148 ~rp~~~~~iiGqs~~~~~l~~~i------------a~~~~~~vlL~Gp~GtGKTTLAr~i~~~~~~~~~~~~~~~~~fv~ 215 (615)
T TIGR02903 148 LRPRAFSEIVGQERAIKALLAKV------------ASPFPQHIILYGPPGVGKTTAARLALEEAKKLKHTPFAEDAPFVE 215 (615)
T ss_pred cCcCcHHhceeCcHHHHHHHHHH------------hcCCCCeEEEECCCCCCHHHHHHHHHHhhhhccCCcccCCCCeEE
Confidence 34678999999998877664322 12345679999999999999999998765 457999
Q ss_pred eechhhhh------hhhcccchhh----HHHHHHH----------HHhcCCeEEEEcCccccccccccccCCCchhhHHH
Q 035561 519 VEAQELEA------GLWVGQSASN----VRELFQT----------ARDLAPVIIFVEDFDLFAGVRGQFIHTKQQDHESF 578 (979)
Q Consensus 519 Is~sdL~~------~~~vG~~~~~----Ir~lF~~----------A~~~aP~ILfIDEIDaL~~~r~~~~~~~~~~~~~i 578 (979)
++|..+.. ....|..... .+..+.. ......++|||||++.|-. ..
T Consensus 216 i~~~~l~~d~~~i~~~llg~~~~~~~~~a~~~l~~~gl~~~~~g~v~~asgGvL~LDEi~~Ld~--------------~~ 281 (615)
T TIGR02903 216 VDGTTLRWDPREVTNPLLGSVHDPIYQGARRDLAETGVPEPKTGLVTDAHGGVLFIDEIGELDP--------------LL 281 (615)
T ss_pred EechhccCCHHHHhHHhcCCccHHHHHHHHHHHHHcCCCchhcCchhhcCCCeEEEeccccCCH--------------HH
Confidence 99876520 0111111100 0111110 0122457999999988732 11
Q ss_pred HHHHHhhhccc------------------------c--cCCe-EEEEecccchhhchhhhhcCCceeeEeccCCCCHHHH
Q 035561 579 INQLLVELDGF------------------------E--KQDG-VVLMATTRNIKQIDEALQRPGRMDRIFNLQKPTQSER 631 (979)
Q Consensus 579 ln~LL~~LDg~------------------------~--~~~~-ViVIATTN~pe~LDpALlRpgRFd~~I~~~~Pd~eeR 631 (979)
.+.|+..|+.- . .... +++.+||+.++.++++|++ ||. .+.+++++.+++
T Consensus 282 Q~~Ll~~Le~~~v~~~~~~~~~~~~~~~~~ik~~~~~~~~~~~VLI~aTt~~~~~l~~aLrS--R~~-~i~~~pls~edi 358 (615)
T TIGR02903 282 QNKLLKVLEDKRVEFSSSYYDPDDPNVPKYIKKLFEEGAPADFVLIGATTRDPEEINPALRS--RCA-EVFFEPLTPEDI 358 (615)
T ss_pred HHHHHHHHhhCeEEeecceeccCCcccchhhhhhcccCccceEEEEEeccccccccCHHHHh--cee-EEEeCCCCHHHH
Confidence 22333333210 0 1122 4444566778899999998 886 678999999999
Q ss_pred HHHHHHHHHhc
Q 035561 632 EKILRIAAQET 642 (979)
Q Consensus 632 ~~IL~~~l~~~ 642 (979)
..|++..+...
T Consensus 359 ~~Il~~~a~~~ 369 (615)
T TIGR02903 359 ALIVLNAAEKI 369 (615)
T ss_pred HHHHHHHHHHc
Confidence 99999988754
No 137
>COG1474 CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones]
Probab=99.26 E-value=1.7e-10 Score=131.72 Aligned_cols=170 Identities=19% Similarity=0.279 Sum_probs=117.2
Q ss_pred CCCCCcccCcHHHHHHHHHHHHhhcChhHHHhcCCCCCceeEecCCCCCChHHHHHHHHHHcCCC-----EEEeechhhh
Q 035561 451 PIPLKDFASVESMREEINEVVAFLQNPSAFQEMGARAPRGVLIVGERGTGKTSLALAIAAEARVP-----VVNVEAQELE 525 (979)
Q Consensus 451 ~~~f~DIvGleevke~L~eiV~~L~~p~~f~~lG~~~P~gVLL~GPPGTGKTtLArAlA~elg~~-----~i~Is~sdL~ 525 (979)
...-+.+.+-++..+.|..++... +....|.++++|||||||||++++.+++++..+ +++|||....
T Consensus 13 ~~iP~~l~~Re~ei~~l~~~l~~~--------~~~~~p~n~~iyG~~GTGKT~~~~~v~~~l~~~~~~~~~~yINc~~~~ 84 (366)
T COG1474 13 DYIPEELPHREEEINQLASFLAPA--------LRGERPSNIIIYGPTGTGKTATVKFVMEELEESSANVEVVYINCLELR 84 (366)
T ss_pred CCCcccccccHHHHHHHHHHHHHH--------hcCCCCccEEEECCCCCCHhHHHHHHHHHHHhhhccCceEEEeeeeCC
Confidence 334455999998888887765442 223456679999999999999999999998543 8999996653
Q ss_pred hhh--------------hcccchhh-HHHHHHHHHh-cCCeEEEEcCccccccccccccCCCchhhHHHHHHHHhhhccc
Q 035561 526 AGL--------------WVGQSASN-VRELFQTARD-LAPVIIFVEDFDLFAGVRGQFIHTKQQDHESFINQLLVELDGF 589 (979)
Q Consensus 526 ~~~--------------~vG~~~~~-Ir~lF~~A~~-~aP~ILfIDEIDaL~~~r~~~~~~~~~~~~~iln~LL~~LDg~ 589 (979)
+.. ..|..... ...+++.... ....||++||+|.|....+ .++-.|+...+..
T Consensus 85 t~~~i~~~i~~~~~~~p~~g~~~~~~~~~l~~~~~~~~~~~IvvLDEid~L~~~~~-----------~~LY~L~r~~~~~ 153 (366)
T COG1474 85 TPYQVLSKILNKLGKVPLTGDSSLEILKRLYDNLSKKGKTVIVILDEVDALVDKDG-----------EVLYSLLRAPGEN 153 (366)
T ss_pred CHHHHHHHHHHHcCCCCCCCCchHHHHHHHHHHHHhcCCeEEEEEcchhhhccccc-----------hHHHHHHhhcccc
Confidence 110 11222222 2222222222 3468999999999964321 4555565444433
Q ss_pred ccCCeEEEEecccch---hhchhhhhcCCcee-eEeccCCCCHHHHHHHHHHHHHhcc
Q 035561 590 EKQDGVVLMATTRNI---KQIDEALQRPGRMD-RIFNLQKPTQSEREKILRIAAQETM 643 (979)
Q Consensus 590 ~~~~~ViVIATTN~p---e~LDpALlRpgRFd-~~I~~~~Pd~eeR~~IL~~~l~~~~ 643 (979)
..++.+|+.+|.. +.+||.+.+ +|. ..|.||+++.+|...||+...+...
T Consensus 154 --~~~v~vi~i~n~~~~~~~ld~rv~s--~l~~~~I~F~pY~a~el~~Il~~R~~~~~ 207 (366)
T COG1474 154 --KVKVSIIAVSNDDKFLDYLDPRVKS--SLGPSEIVFPPYTAEELYDILRERVEEGF 207 (366)
T ss_pred --ceeEEEEEEeccHHHHHHhhhhhhh--ccCcceeeeCCCCHHHHHHHHHHHHHhhc
Confidence 5678999999985 478999988 554 4589999999999999999987643
No 138
>PRK13407 bchI magnesium chelatase subunit I; Provisional
Probab=99.25 E-value=5.2e-11 Score=134.26 Aligned_cols=163 Identities=21% Similarity=0.365 Sum_probs=102.1
Q ss_pred CCCCCCcccCcHHHHHHHHHHHHhhcChhHHHhcCCCCCceeEecCCCCCChHHHHHHHHHHc-------CCC--EEEee
Q 035561 450 PPIPLKDFASVESMREEINEVVAFLQNPSAFQEMGARAPRGVLIVGERGTGKTSLALAIAAEA-------RVP--VVNVE 520 (979)
Q Consensus 450 ~~~~f~DIvGleevke~L~eiV~~L~~p~~f~~lG~~~P~gVLL~GPPGTGKTtLArAlA~el-------g~~--~i~Is 520 (979)
.+.+|++|+|++++++.|.-.. + ++ | ..|+||+|+||||||++|+++|+-+ +.+ +..+.
T Consensus 3 ~~~~f~~i~Gq~~~~~~l~~~~--~-~~------~---~~~vLl~G~pG~gKT~lar~la~llP~~~~~e~~~~~~~~~~ 70 (334)
T PRK13407 3 KPFPFSAIVGQEEMKQAMVLTA--I-DP------G---IGGVLVFGDRGTGKSTAVRALAALLPLIKAVEGCPVNSARPE 70 (334)
T ss_pred CCCCHHHhCCHHHHHHHHHHHH--h-cc------C---CCcEEEEcCCCCCHHHHHHHHHHHCCCcchhcccccccCccc
Confidence 4578999999999998876211 0 00 1 1479999999999999999999988 332 11111
Q ss_pred ch-hh--------hhh------hhcccchhhHHHH--HHHH-------------HhcCCeEEEEcCccccccccccccCC
Q 035561 521 AQ-EL--------EAG------LWVGQSASNVREL--FQTA-------------RDLAPVIIFVEDFDLFAGVRGQFIHT 570 (979)
Q Consensus 521 ~s-dL--------~~~------~~vG~~~~~Ir~l--F~~A-------------~~~aP~ILfIDEIDaL~~~r~~~~~~ 570 (979)
+. ++ ... .-.+.++..+-.- ++.+ .....++||+||++.+.
T Consensus 71 ~~~~~~~~~~~~~~~~~~p~~~~p~~~t~~~l~G~~d~~~~l~~g~~~~~~G~l~~A~~GiL~lDEInrl~--------- 141 (334)
T PRK13407 71 DCPEWAHVSSTTMIERPTPVVDLPLGVTEDRVVGALDIERALTRGEKAFEPGLLARANRGYLYIDEVNLLE--------- 141 (334)
T ss_pred CCcccccccCCcccccCCccccCCCCCCcceeecchhhhhhhhcCCeeecCCceEEcCCCeEEecChHhCC---------
Confidence 10 11 000 0001111111110 1111 01123699999999772
Q ss_pred CchhhHHHHHHHHhhhccc-----------ccCCeEEEEecccchh-hchhhhhcCCceeeEeccCCCCH-HHHHHHHHH
Q 035561 571 KQQDHESFINQLLVELDGF-----------EKQDGVVLMATTRNIK-QIDEALQRPGRMDRIFNLQKPTQ-SEREKILRI 637 (979)
Q Consensus 571 ~~~~~~~iln~LL~~LDg~-----------~~~~~ViVIATTN~pe-~LDpALlRpgRFd~~I~~~~Pd~-eeR~~IL~~ 637 (979)
..+.+.|+..|+.- .....+++++|+|..+ .++++++. ||...+.+++|.. ++|.+|++.
T Consensus 142 -----~~~q~~Lle~mee~~v~v~r~G~~~~~p~rfiviAt~NP~e~~l~~aLld--RF~~~v~v~~~~~~~e~~~il~~ 214 (334)
T PRK13407 142 -----DHIVDLLLDVAQSGENVVEREGLSIRHPARFVLVGSGNPEEGELRPQLLD--RFGLSVEVRSPRDVETRVEVIRR 214 (334)
T ss_pred -----HHHHHHHHHHHHcCCeEEEECCeEEecCCCEEEEecCCcccCCCCHHHHh--hcceEEEcCCCCcHHHHHHHHHH
Confidence 33445555555421 1234688999998755 68999999 9999999999877 999999998
Q ss_pred HHH
Q 035561 638 AAQ 640 (979)
Q Consensus 638 ~l~ 640 (979)
...
T Consensus 215 ~~~ 217 (334)
T PRK13407 215 RDA 217 (334)
T ss_pred hhc
Confidence 643
No 139
>COG2812 DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair]
Probab=99.24 E-value=9.2e-11 Score=137.75 Aligned_cols=193 Identities=16% Similarity=0.200 Sum_probs=143.6
Q ss_pred CCCCCCCCcccCcHHHHHHHHHHHHhhcChhHHHhcCCCCCceeEecCCCCCChHHHHHHHHHHcCCCE-------EEe-
Q 035561 448 KNPPIPLKDFASVESMREEINEVVAFLQNPSAFQEMGARAPRGVLIVGERGTGKTSLALAIAAEARVPV-------VNV- 519 (979)
Q Consensus 448 ~~~~~~f~DIvGleevke~L~eiV~~L~~p~~f~~lG~~~P~gVLL~GPPGTGKTtLArAlA~elg~~~-------i~I- 519 (979)
+++|.+|+|++|++.+...|+..+..= +.+.+.||+||.||||||+||.+|+.+++.- -.+
T Consensus 9 KyRP~~F~evvGQe~v~~~L~nal~~~-----------ri~hAYlfsG~RGvGKTt~Ari~AkalNC~~~~~~ePC~~C~ 77 (515)
T COG2812 9 KYRPKTFDDVVGQEHVVKTLSNALENG-----------RIAHAYLFSGPRGVGKTTIARILAKALNCENGPTAEPCGKCI 77 (515)
T ss_pred HhCcccHHHhcccHHHHHHHHHHHHhC-----------cchhhhhhcCCCCcCchhHHHHHHHHhcCCCCCCCCcchhhh
Confidence 577889999999999999999776542 3345689999999999999999999987531 111
Q ss_pred echhhhhhhh---------cccchhhHHHHHHHHHh----cCCeEEEEcCccccccccccccCCCchhhHHHHHHHHhhh
Q 035561 520 EAQELEAGLW---------VGQSASNVRELFQTARD----LAPVIIFVEDFDLFAGVRGQFIHTKQQDHESFINQLLVEL 586 (979)
Q Consensus 520 s~sdL~~~~~---------vG~~~~~Ir~lF~~A~~----~aP~ILfIDEIDaL~~~r~~~~~~~~~~~~~iln~LL~~L 586 (979)
+|.++..+.+ ...+-..+|++-+.+.- ....|.+|||+|-| .....|.||+.+
T Consensus 78 ~Ck~I~~g~~~DviEiDaASn~gVddiR~i~e~v~y~P~~~ryKVyiIDEvHML--------------S~~afNALLKTL 143 (515)
T COG2812 78 SCKEINEGSLIDVIEIDAASNTGVDDIREIIEKVNYAPSEGRYKVYIIDEVHML--------------SKQAFNALLKTL 143 (515)
T ss_pred hhHhhhcCCcccchhhhhhhccChHHHHHHHHHhccCCccccceEEEEecHHhh--------------hHHHHHHHhccc
Confidence 1112211111 12355678888888753 23579999999977 456788999888
Q ss_pred cccccCCeEEEEecccchhhchhhhhcCCceeeEeccCCCCHHHHHHHHHHHHHhccchhhhhhhhHHHHHHHcCCCCHH
Q 035561 587 DGFEKQDGVVLMATTRNIKQIDEALQRPGRMDRIFNLQKPTQSEREKILRIAAQETMDEELIDLVDWRKVAEKTALLRPI 666 (979)
Q Consensus 587 Dg~~~~~~ViVIATTN~pe~LDpALlRpgRFd~~I~~~~Pd~eeR~~IL~~~l~~~~~~~l~~dvdL~~LA~~T~Gfsga 666 (979)
+. ....|++|.+|..++.+|+.++++| .++.|...+.++...-|...+.+.. ...++--+..+|+..+| +..
T Consensus 144 EE--PP~hV~FIlATTe~~Kip~TIlSRc---q~f~fkri~~~~I~~~L~~i~~~E~--I~~e~~aL~~ia~~a~G-s~R 215 (515)
T COG2812 144 EE--PPSHVKFILATTEPQKIPNTILSRC---QRFDFKRLDLEEIAKHLAAILDKEG--INIEEDALSLIARAAEG-SLR 215 (515)
T ss_pred cc--CccCeEEEEecCCcCcCchhhhhcc---ccccccCCCHHHHHHHHHHHHHhcC--CccCHHHHHHHHHHcCC-Chh
Confidence 74 5567888888889999999999944 6788999999999999998887652 33456678889999998 555
Q ss_pred HHHHHHH
Q 035561 667 ELKLVPV 673 (979)
Q Consensus 667 DL~~Lv~ 673 (979)
|...+..
T Consensus 216 DalslLD 222 (515)
T COG2812 216 DALSLLD 222 (515)
T ss_pred hHHHHHH
Confidence 6555543
No 140
>PRK14971 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.23 E-value=2.3e-10 Score=138.47 Aligned_cols=191 Identities=16% Similarity=0.220 Sum_probs=128.5
Q ss_pred CCCCCCCCcccCcHHHHHHHHHHHHhhcChhHHHhcCCCCCceeEecCCCCCChHHHHHHHHHHcCCCEEE---------
Q 035561 448 KNPPIPLKDFASVESMREEINEVVAFLQNPSAFQEMGARAPRGVLIVGERGTGKTSLALAIAAEARVPVVN--------- 518 (979)
Q Consensus 448 ~~~~~~f~DIvGleevke~L~eiV~~L~~p~~f~~lG~~~P~gVLL~GPPGTGKTtLArAlA~elg~~~i~--------- 518 (979)
+++|.+|+||+|++.+++.|...+. ..+.|..+|||||+|+|||++|+++|+.+.+.--.
T Consensus 10 kyRP~~f~~viGq~~~~~~L~~~i~-----------~~~l~hayLf~Gp~G~GKtt~A~~lAk~l~c~~~~~~~~~Cg~C 78 (614)
T PRK14971 10 KYRPSTFESVVGQEALTTTLKNAIA-----------TNKLAHAYLFCGPRGVGKTTCARIFAKTINCQNLTADGEACNEC 78 (614)
T ss_pred HHCCCCHHHhcCcHHHHHHHHHHHH-----------cCCCCeeEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCCCcc
Confidence 5678899999999999999886653 12456779999999999999999999988632100
Q ss_pred eechhhhhhh------hcc---cchhhHHHHHHHHHhc----CCeEEEEcCccccccccccccCCCchhhHHHHHHHHhh
Q 035561 519 VEAQELEAGL------WVG---QSASNVRELFQTARDL----APVIIFVEDFDLFAGVRGQFIHTKQQDHESFINQLLVE 585 (979)
Q Consensus 519 Is~sdL~~~~------~vG---~~~~~Ir~lF~~A~~~----aP~ILfIDEIDaL~~~r~~~~~~~~~~~~~iln~LL~~ 585 (979)
-+|..+.... +.+ .+...++.+.+.+... ...|++|||+|.+. ....+.|+..
T Consensus 79 ~sC~~~~~~~~~n~~~ld~~~~~~vd~Ir~li~~~~~~P~~~~~KVvIIdea~~Ls--------------~~a~naLLK~ 144 (614)
T PRK14971 79 ESCVAFNEQRSYNIHELDAASNNSVDDIRNLIEQVRIPPQIGKYKIYIIDEVHMLS--------------QAAFNAFLKT 144 (614)
T ss_pred hHHHHHhcCCCCceEEecccccCCHHHHHHHHHHHhhCcccCCcEEEEEECcccCC--------------HHHHHHHHHH
Confidence 0111111000 011 1234577777666432 23699999999872 2356788888
Q ss_pred hcccccCCeEEEEecccchhhchhhhhcCCceeeEeccCCCCHHHHHHHHHHHHHhccchhhhhhhhHHHHHHHcCCCCH
Q 035561 586 LDGFEKQDGVVLMATTRNIKQIDEALQRPGRMDRIFNLQKPTQSEREKILRIAAQETMDEELIDLVDWRKVAEKTALLRP 665 (979)
Q Consensus 586 LDg~~~~~~ViVIATTN~pe~LDpALlRpgRFd~~I~~~~Pd~eeR~~IL~~~l~~~~~~~l~~dvdL~~LA~~T~Gfsg 665 (979)
|+... ...++|.+|+.+..|-++|++ |. ..++|.+++.++....++..+.... ...+...+..|+..+.| +.
T Consensus 145 LEepp--~~tifIL~tt~~~kIl~tI~S--Rc-~iv~f~~ls~~ei~~~L~~ia~~eg--i~i~~~al~~La~~s~g-dl 216 (614)
T PRK14971 145 LEEPP--SYAIFILATTEKHKILPTILS--RC-QIFDFNRIQVADIVNHLQYVASKEG--ITAEPEALNVIAQKADG-GM 216 (614)
T ss_pred HhCCC--CCeEEEEEeCCchhchHHHHh--hh-heeecCCCCHHHHHHHHHHHHHHcC--CCCCHHHHHHHHHHcCC-CH
Confidence 87643 334555555566888899998 44 6799999999999999998877642 12334457888888866 33
Q ss_pred HHHHHH
Q 035561 666 IELKLV 671 (979)
Q Consensus 666 aDL~~L 671 (979)
+++.++
T Consensus 217 r~al~~ 222 (614)
T PRK14971 217 RDALSI 222 (614)
T ss_pred HHHHHH
Confidence 444333
No 141
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=99.19 E-value=3.1e-10 Score=141.88 Aligned_cols=193 Identities=17% Similarity=0.238 Sum_probs=130.0
Q ss_pred CcccCcHHHHHHHHHHHHhhcChhHHHhcCC---CCCce-eEecCCCCCChHHHHHHHHHHc---CCCEEEeechhhhhh
Q 035561 455 KDFASVESMREEINEVVAFLQNPSAFQEMGA---RAPRG-VLIVGERGTGKTSLALAIAAEA---RVPVVNVEAQELEAG 527 (979)
Q Consensus 455 ~DIvGleevke~L~eiV~~L~~p~~f~~lG~---~~P~g-VLL~GPPGTGKTtLArAlA~el---g~~~i~Is~sdL~~~ 527 (979)
+.|+|++++.+.+.+.+...+ .|+ ..|.| +||+||||||||.+|+++|..+ ...++.++++++...
T Consensus 566 ~~v~GQ~~Av~~v~~~i~~~~-------~gl~~~~~p~~~~lf~Gp~GvGKT~lA~~La~~l~~~~~~~~~~dmse~~~~ 638 (852)
T TIGR03345 566 ERVIGQDHALEAIAERIRTAR-------AGLEDPRKPLGVFLLVGPSGVGKTETALALAELLYGGEQNLITINMSEFQEA 638 (852)
T ss_pred CeEcChHHHHHHHHHHHHHHh-------cCCCCCCCCceEEEEECCCCCCHHHHHHHHHHHHhCCCcceEEEeHHHhhhh
Confidence 468999998888877664421 122 24555 7999999999999999999998 468899999887422
Q ss_pred h-----------hcccchhhHHHHHHHHHhcCCeEEEEcCccccccccccccCCCchhhHHHHHHHHhhhcccc------
Q 035561 528 L-----------WVGQSASNVRELFQTARDLAPVIIFVEDFDLFAGVRGQFIHTKQQDHESFINQLLVELDGFE------ 590 (979)
Q Consensus 528 ~-----------~vG~~~~~Ir~lF~~A~~~aP~ILfIDEIDaL~~~r~~~~~~~~~~~~~iln~LL~~LDg~~------ 590 (979)
. |+|..... .+.+..+.+..+||+|||||.. +..+.+.|+..+|.-.
T Consensus 639 ~~~~~l~g~~~gyvg~~~~g--~L~~~v~~~p~svvllDEieka--------------~~~v~~~Llq~ld~g~l~d~~G 702 (852)
T TIGR03345 639 HTVSRLKGSPPGYVGYGEGG--VLTEAVRRKPYSVVLLDEVEKA--------------HPDVLELFYQVFDKGVMEDGEG 702 (852)
T ss_pred hhhccccCCCCCcccccccc--hHHHHHHhCCCcEEEEechhhc--------------CHHHHHHHHHHhhcceeecCCC
Confidence 1 33433222 1334445667799999999855 3455667777776421
Q ss_pred ---cCCeEEEEecccchh-----------------------------hchhhhhcCCceeeEeccCCCCHHHHHHHHHHH
Q 035561 591 ---KQDGVVLMATTRNIK-----------------------------QIDEALQRPGRMDRIFNLQKPTQSEREKILRIA 638 (979)
Q Consensus 591 ---~~~~ViVIATTN~pe-----------------------------~LDpALlRpgRFd~~I~~~~Pd~eeR~~IL~~~ 638 (979)
.-.+.++|.|||... .+.|+|++ |++ .|.|.+++.++..+|+...
T Consensus 703 r~vd~~n~iiI~TSNlg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~PEfln--Ri~-iI~F~pLs~e~l~~Iv~~~ 779 (852)
T TIGR03345 703 REIDFKNTVILLTSNAGSDLIMALCADPETAPDPEALLEALRPELLKVFKPAFLG--RMT-VIPYLPLDDDVLAAIVRLK 779 (852)
T ss_pred cEEeccccEEEEeCCCchHHHHHhccCcccCcchHHHHHHHHHHHHHhccHHHhc--cee-EEEeCCCCHHHHHHHHHHH
Confidence 114578888988511 14577787 897 8999999999999999998
Q ss_pred HHhccc--------hhhhhhhhHHHHHHHcCC--CCHHHHHHHHH
Q 035561 639 AQETMD--------EELIDLVDWRKVAEKTAL--LRPIELKLVPV 673 (979)
Q Consensus 639 l~~~~~--------~~l~~dvdL~~LA~~T~G--fsgaDL~~Lv~ 673 (979)
+..... .-..++.-.+.|++...+ |-...|..+++
T Consensus 780 L~~l~~rl~~~~gi~l~i~d~a~~~La~~g~~~~~GAR~L~r~Ie 824 (852)
T TIGR03345 780 LDRIARRLKENHGAELVYSEALVEHIVARCTEVESGARNIDAILN 824 (852)
T ss_pred HHHHHHHHHHhcCceEEECHHHHHHHHHHcCCCCCChHHHHHHHH
Confidence 765311 011333445667776543 45666666653
No 142
>COG2607 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=99.19 E-value=9.4e-10 Score=116.78 Aligned_cols=164 Identities=26% Similarity=0.370 Sum_probs=119.8
Q ss_pred CCCCCCCcccCcHHHHHHHHHHHHhhcChhHHHhcCCCCCceeEecCCCCCChHHHHHHHHHHc---CCCEEEeechhhh
Q 035561 449 NPPIPLKDFASVESMREEINEVVAFLQNPSAFQEMGARAPRGVLIVGERGTGKTSLALAIAAEA---RVPVVNVEAQELE 525 (979)
Q Consensus 449 ~~~~~f~DIvGleevke~L~eiV~~L~~p~~f~~lG~~~P~gVLL~GPPGTGKTtLArAlA~el---g~~~i~Is~sdL~ 525 (979)
..++.+.+++|.+.+++.|.+-... |. ...+..+|||+|..|||||+|+||+-++. +..+++|+-.++.
T Consensus 54 ~~~i~L~~l~Gvd~qk~~L~~NT~~------F~--~G~pANnVLLwGaRGtGKSSLVKA~~~e~~~~glrLVEV~k~dl~ 125 (287)
T COG2607 54 PDPIDLADLVGVDRQKEALVRNTEQ------FA--EGLPANNVLLWGARGTGKSSLVKALLNEYADEGLRLVEVDKEDLA 125 (287)
T ss_pred CCCcCHHHHhCchHHHHHHHHHHHH------HH--cCCcccceEEecCCCCChHHHHHHHHHHHHhcCCeEEEEcHHHHh
Confidence 3458999999999999999754433 32 12345789999999999999999999887 5789999998885
Q ss_pred hhhhcccchhhHHHHHHHHHhc-CCeEEEEcCccccccccccccCCCchhhHHHHHHHHhhhccc--ccCCeEEEEeccc
Q 035561 526 AGLWVGQSASNVRELFQTARDL-APVIIFVEDFDLFAGVRGQFIHTKQQDHESFINQLLVELDGF--EKQDGVVLMATTR 602 (979)
Q Consensus 526 ~~~~vG~~~~~Ir~lF~~A~~~-aP~ILfIDEIDaL~~~r~~~~~~~~~~~~~iln~LL~~LDg~--~~~~~ViVIATTN 602 (979)
.+-.+++..+.. ..-|||+|++- + +........|-..|||= ....+|++-||+|
T Consensus 126 ----------~Lp~l~~~Lr~~~~kFIlFcDDLS-F------------e~gd~~yK~LKs~LeG~ve~rP~NVl~YATSN 182 (287)
T COG2607 126 ----------TLPDLVELLRARPEKFILFCDDLS-F------------EEGDDAYKALKSALEGGVEGRPANVLFYATSN 182 (287)
T ss_pred ----------hHHHHHHHHhcCCceEEEEecCCC-C------------CCCchHHHHHHHHhcCCcccCCCeEEEEEecC
Confidence 345566666553 36899999973 1 11122233455556663 3356899999999
Q ss_pred chhhchh--------------------hhhcCCceeeEeccCCCCHHHHHHHHHHHHHhcc
Q 035561 603 NIKQIDE--------------------ALQRPGRMDRIFNLQKPTQSEREKILRIAAQETM 643 (979)
Q Consensus 603 ~pe~LDp--------------------ALlRpgRFd~~I~~~~Pd~eeR~~IL~~~l~~~~ 643 (979)
+-..|+. .+.-+.||...+.|++++.++-..|+.++++...
T Consensus 183 RRHLl~e~~~dn~~~~~eih~~eaveEKlSlSDRFGLwL~F~~~~Q~~YL~~V~~~a~~~~ 243 (287)
T COG2607 183 RRHLLPEDMKDNEGSTGEIHPSEAVEEKLSLSDRFGLWLSFYPCDQDEYLKIVDHYAKHFG 243 (287)
T ss_pred CcccccHhhhhCCCcccccChhHHHHHhhchhhhcceeecccCCCHHHHHHHHHHHHHHcC
Confidence 9444331 1222359999999999999999999999998763
No 143
>PRK06620 hypothetical protein; Validated
Probab=99.16 E-value=5.6e-10 Score=118.69 Aligned_cols=176 Identities=13% Similarity=0.116 Sum_probs=109.1
Q ss_pred CCCCCCCcccCcHH---HHHHHHHHHHhhcChhHHHhcCCCC-CceeEecCCCCCChHHHHHHHHHHcCCCEEEeechhh
Q 035561 449 NPPIPLKDFASVES---MREEINEVVAFLQNPSAFQEMGARA-PRGVLIVGERGTGKTSLALAIAAEARVPVVNVEAQEL 524 (979)
Q Consensus 449 ~~~~~f~DIvGlee---vke~L~eiV~~L~~p~~f~~lG~~~-P~gVLL~GPPGTGKTtLArAlA~elg~~~i~Is~sdL 524 (979)
.+..+|++++--+. +...++++. .. .+..+ -..++||||||||||+|++++++..+..++ +....
T Consensus 10 ~~~~tfd~Fvvg~~N~~a~~~~~~~~---~~------~~~~~~~~~l~l~Gp~G~GKThLl~a~~~~~~~~~~--~~~~~ 78 (214)
T PRK06620 10 SSKYHPDEFIVSSSNDQAYNIIKNWQ---CG------FGVNPYKFTLLIKGPSSSGKTYLTKIWQNLSNAYII--KDIFF 78 (214)
T ss_pred CCCCCchhhEecccHHHHHHHHHHHH---Hc------cccCCCcceEEEECCCCCCHHHHHHHHHhccCCEEc--chhhh
Confidence 45668999775443 333333322 11 12222 167999999999999999999998875332 21111
Q ss_pred hhhhhcccchhhHHHHHHHHHhcCCeEEEEcCccccccccccccCCCchhhHHHHHHHHhhhcccccCCeEEEEecccch
Q 035561 525 EAGLWVGQSASNVRELFQTARDLAPVIIFVEDFDLFAGVRGQFIHTKQQDHESFINQLLVELDGFEKQDGVVLMATTRNI 604 (979)
Q Consensus 525 ~~~~~vG~~~~~Ir~lF~~A~~~aP~ILfIDEIDaL~~~r~~~~~~~~~~~~~iln~LL~~LDg~~~~~~ViVIATTN~p 604 (979)
. ...+ ....+|+|||||.+. .. .|...++.+......+|++++..|
T Consensus 79 ------~------~~~~-----~~~d~lliDdi~~~~----------~~-------~lf~l~N~~~e~g~~ilits~~~p 124 (214)
T PRK06620 79 ------N------EEIL-----EKYNAFIIEDIENWQ----------EP-------ALLHIFNIINEKQKYLLLTSSDKS 124 (214)
T ss_pred ------c------hhHH-----hcCCEEEEeccccch----------HH-------HHHHHHHHHHhcCCEEEEEcCCCc
Confidence 0 0111 134789999998441 01 222233333334456777777665
Q ss_pred hh--chhhhhcCCcee--eEeccCCCCHHHHHHHHHHHHHhccchhhhhhhhHHHHHHHcCCCCHHHHHHHHHHH
Q 035561 605 KQ--IDEALQRPGRMD--RIFNLQKPTQSEREKILRIAAQETMDEELIDLVDWRKVAEKTALLRPIELKLVPVAL 675 (979)
Q Consensus 605 e~--LDpALlRpgRFd--~~I~~~~Pd~eeR~~IL~~~l~~~~~~~l~~dvdL~~LA~~T~GfsgaDL~~Lv~aa 675 (979)
.. + |+|++ |+. ..+.+.+|+.+++..+++.+++... -..++..++.|+++++| +...+..+...+
T Consensus 125 ~~l~l-~~L~S--Rl~~gl~~~l~~pd~~~~~~~l~k~~~~~~--l~l~~ev~~~L~~~~~~-d~r~l~~~l~~l 193 (214)
T PRK06620 125 RNFTL-PDLSS--RIKSVLSILLNSPDDELIKILIFKHFSISS--VTISRQIIDFLLVNLPR-EYSKIIEILENI 193 (214)
T ss_pred cccch-HHHHH--HHhCCceEeeCCCCHHHHHHHHHHHHHHcC--CCCCHHHHHHHHHHccC-CHHHHHHHHHHH
Confidence 54 5 78988 775 4799999999999999999887542 22455567888988877 444454444433
No 144
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=99.16 E-value=2.3e-10 Score=139.12 Aligned_cols=163 Identities=20% Similarity=0.312 Sum_probs=122.2
Q ss_pred CcccCcHHHHHHHHHHHHhhcChhHHHhcCCC---CC-ceeEecCCCCCChHHHHHHHHHHcC---CCEEEeechhhhhh
Q 035561 455 KDFASVESMREEINEVVAFLQNPSAFQEMGAR---AP-RGVLIVGERGTGKTSLALAIAAEAR---VPVVNVEAQELEAG 527 (979)
Q Consensus 455 ~DIvGleevke~L~eiV~~L~~p~~f~~lG~~---~P-~gVLL~GPPGTGKTtLArAlA~elg---~~~i~Is~sdL~~~ 527 (979)
+-|+|++++.+.+...+.. .+.|+. .| .++||.||+|+|||-||+++|..+. ..++.+++|++...
T Consensus 491 ~rViGQd~AV~avs~aIrr-------aRaGL~dp~rPigsFlF~GPTGVGKTELAkaLA~~Lfg~e~aliR~DMSEy~Ek 563 (786)
T COG0542 491 KRVIGQDEAVEAVSDAIRR-------ARAGLGDPNRPIGSFLFLGPTGVGKTELAKALAEALFGDEQALIRIDMSEYMEK 563 (786)
T ss_pred cceeChHHHHHHHHHHHHH-------HhcCCCCCCCCceEEEeeCCCcccHHHHHHHHHHHhcCCCccceeechHHHHHH
Confidence 4689999988888776643 233443 23 4678899999999999999999996 89999999998633
Q ss_pred h-----------hcccchhhHHHHHHHHHhcCCeEEEEcCccccccccccccCCCchhhHHHHHHHHhhhccc--cc---
Q 035561 528 L-----------WVGQSASNVRELFQTARDLAPVIIFVEDFDLFAGVRGQFIHTKQQDHESFINQLLVELDGF--EK--- 591 (979)
Q Consensus 528 ~-----------~vG~~~~~Ir~lF~~A~~~aP~ILfIDEIDaL~~~r~~~~~~~~~~~~~iln~LL~~LDg~--~~--- 591 (979)
. |+|..+... +-+..+.+..|||++|||+.- +..++|-||+.||.= ..
T Consensus 564 HsVSrLIGaPPGYVGyeeGG~--LTEaVRr~PySViLlDEIEKA--------------HpdV~nilLQVlDdGrLTD~~G 627 (786)
T COG0542 564 HSVSRLIGAPPGYVGYEEGGQ--LTEAVRRKPYSVILLDEIEKA--------------HPDVFNLLLQVLDDGRLTDGQG 627 (786)
T ss_pred HHHHHHhCCCCCCceeccccc--hhHhhhcCCCeEEEechhhhc--------------CHHHHHHHHHHhcCCeeecCCC
Confidence 2 666555332 233445555699999999843 678999999999752 11
Q ss_pred ----CCeEEEEecccchh----------------------------hchhhhhcCCceeeEeccCCCCHHHHHHHHHHHH
Q 035561 592 ----QDGVVLMATTRNIK----------------------------QIDEALQRPGRMDRIFNLQKPTQSEREKILRIAA 639 (979)
Q Consensus 592 ----~~~ViVIATTN~pe----------------------------~LDpALlRpgRFd~~I~~~~Pd~eeR~~IL~~~l 639 (979)
-.+.+||+|||--. ...|.++. |+|.+|.|.+.+.+...+|+..++
T Consensus 628 r~VdFrNtiIImTSN~Gs~~i~~~~~~~~~~~~~~~~~~v~~~l~~~F~PEFLN--Rid~II~F~~L~~~~l~~Iv~~~L 705 (786)
T COG0542 628 RTVDFRNTIIIMTSNAGSEEILRDADGDDFADKEALKEAVMEELKKHFRPEFLN--RIDEIIPFNPLSKEVLERIVDLQL 705 (786)
T ss_pred CEEecceeEEEEecccchHHHHhhccccccchhhhHHHHHHHHHHhhCCHHHHh--hcccEEeccCCCHHHHHHHHHHHH
Confidence 13578999998611 12467777 999999999999999999999988
Q ss_pred Hhc
Q 035561 640 QET 642 (979)
Q Consensus 640 ~~~ 642 (979)
+..
T Consensus 706 ~~l 708 (786)
T COG0542 706 NRL 708 (786)
T ss_pred HHH
Confidence 754
No 145
>TIGR02030 BchI-ChlI magnesium chelatase ATPase subunit I. This model represents one of two ATPase subunits of the trimeric magnesium chelatase responsible for insertion of magnesium ion into protoporphyrin IX. This is an essential step in the biosynthesis of both chlorophyll and bacteriochlorophyll. This subunit is found in green plants, photosynthetic algae, cyanobacteria and other photosynthetic bacteria.
Probab=99.15 E-value=5.3e-10 Score=126.36 Aligned_cols=249 Identities=17% Similarity=0.205 Sum_probs=133.7
Q ss_pred CCCcccCcHHHHHHHHHHHHhhcChhHHHhcCCCCCceeEecCCCCCChHHHHHHHHHHc-------CCCEE--------
Q 035561 453 PLKDFASVESMREEINEVVAFLQNPSAFQEMGARAPRGVLIVGERGTGKTSLALAIAAEA-------RVPVV-------- 517 (979)
Q Consensus 453 ~f~DIvGleevke~L~eiV~~L~~p~~f~~lG~~~P~gVLL~GPPGTGKTtLArAlA~el-------g~~~i-------- 517 (979)
.|..|+|++++|..|.-.. .+| ...+++|.|+|||||||+++++++-+ +.++-
T Consensus 2 pf~~ivgq~~~~~al~~~~---~~~---------~~g~vli~G~~G~gKttl~r~~~~~~~~~~~~~~~~~~~~~~~~~~ 69 (337)
T TIGR02030 2 PFTAIVGQDEMKLALLLNV---IDP---------KIGGVMVMGDRGTGKSTAVRALAALLPEIKAVAGCPFNSSPSDPEM 69 (337)
T ss_pred CccccccHHHHHHHHHHHh---cCC---------CCCeEEEEcCCCCCHHHHHHHHHHhhcccccccCCCCCCCCCCccc
Confidence 5899999999998875211 111 23579999999999999999999877 22221
Q ss_pred -Eeechhh----------------hhhhhcccchhhHHHHHH--HH-------------HhcCCeEEEEcCccccccccc
Q 035561 518 -NVEAQEL----------------EAGLWVGQSASNVRELFQ--TA-------------RDLAPVIIFVEDFDLFAGVRG 565 (979)
Q Consensus 518 -~Is~sdL----------------~~~~~vG~~~~~Ir~lF~--~A-------------~~~aP~ILfIDEIDaL~~~r~ 565 (979)
..+|... . ..-.|.++..+-...+ .+ .....++|||||++.+.
T Consensus 70 ~~~~~r~~~~~~~~~~~~~~~~~~~-~lP~~~t~d~l~G~~d~~~~l~~g~~~~~~GlL~~A~~GvL~lDEi~~L~---- 144 (337)
T TIGR02030 70 MCEEVRIRVDSQEPLSIIKKPVPVV-DLPLGATEDRVCGTLDIERALTEGVKAFEPGLLARANRGILYIDEVNLLE---- 144 (337)
T ss_pred cChHHhhhhhcccccccccCCCCcC-CCCCCCcccceecchhHhhHhhcCCEEeecCcceeccCCEEEecChHhCC----
Confidence 0011100 0 0001111111111111 10 01234899999999872
Q ss_pred cccCCCchhhHHHHHHHHhhhcc----c-------ccCCeEEEEecccchh-hchhhhhcCCceeeEeccCCCCH-HHHH
Q 035561 566 QFIHTKQQDHESFINQLLVELDG----F-------EKQDGVVLMATTRNIK-QIDEALQRPGRMDRIFNLQKPTQ-SERE 632 (979)
Q Consensus 566 ~~~~~~~~~~~~iln~LL~~LDg----~-------~~~~~ViVIATTN~pe-~LDpALlRpgRFd~~I~~~~Pd~-eeR~ 632 (979)
..+.+.|+..|+. + ....++++++|+|..+ .++++++. ||...+.++.|+. ++|.
T Consensus 145 ----------~~~Q~~Ll~~l~~g~~~v~r~G~~~~~~~r~iviat~np~eg~l~~~Lld--Rf~l~i~l~~p~~~eer~ 212 (337)
T TIGR02030 145 ----------DHLVDVLLDVAASGWNVVEREGISIRHPARFVLVGSGNPEEGELRPQLLD--RFGLHAEIRTVRDVELRV 212 (337)
T ss_pred ----------HHHHHHHHHHHHhCCeEEEECCEEEEcCCCEEEEeccccccCCCCHHHHh--hcceEEECCCCCCHHHHH
Confidence 2344455555532 1 1123578888888655 69999999 9999999999976 8999
Q ss_pred HHHHHHHHhccchhhhhhhhHHHHHHHcCCCCHHHHHHHHHHHhhhhhccCCCChHHHhhhcchhhhccCCCccccccch
Q 035561 633 KILRIAAQETMDEELIDLVDWRKVAEKTALLRPIELKLVPVALEGSAFRSKFLDTDELMSYCGWFATFSGVVPKWFRKTK 712 (979)
Q Consensus 633 ~IL~~~l~~~~~~~l~~dvdL~~LA~~T~GfsgaDL~~Lv~aa~~aa~r~~~~s~~ei~~~~d~~aAl~~~~P~~lR~~~ 712 (979)
+|++........ .. ........ -+-..+.+|...-. .+....++.+.+.-.+++..+.. ..+.|...
T Consensus 213 eIL~~~~~~~~~-~~---~~~~~~~~-e~~~~~~~I~~a~~-----~~~~V~v~d~~~~~i~~l~~~~~---~~s~Ra~i 279 (337)
T TIGR02030 213 EIVERRTEYDAD-PH---AFCEKWQT-EQEALQAKIVNAQN-----LLPQVTIPYDVLVKVAELCAELD---VDGLRGEL 279 (337)
T ss_pred HHHHhhhhcccC-ch---hhhhhhhh-hhhcCHHHHHHHHH-----HhccCcCCHHHHHHHHHHHHHHC---CCCCcHHH
Confidence 999875432100 00 00000100 01122333333211 11222233333333333333322 22335444
Q ss_pred hhhhhhhhhhhh-cCccccHHHHHHHHHhhhc
Q 035561 713 IVKKISRMLVDH-LGLTLTKEDLQNVVDLMEP 743 (979)
Q Consensus 713 llk~~~v~w~Di-GGl~vtkedL~eAIe~~~k 743 (979)
.+-+.+..++-. |.-.++.+|++.++..+..
T Consensus 280 ~l~raArA~Aal~GR~~V~~dDv~~~a~~vL~ 311 (337)
T TIGR02030 280 TLNRAAKALAAFEGRTEVTVDDIRRVAVLALR 311 (337)
T ss_pred HHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHH
Confidence 344444444433 4468889999988876443
No 146
>PRK07471 DNA polymerase III subunit delta'; Validated
Probab=99.14 E-value=1e-09 Score=125.44 Aligned_cols=181 Identities=16% Similarity=0.141 Sum_probs=122.0
Q ss_pred CCCCCCCcccCcHHHHHHHHHHHHhhcChhHHHhcCCCCCceeEecCCCCCChHHHHHHHHHHcCCCE------------
Q 035561 449 NPPIPLKDFASVESMREEINEVVAFLQNPSAFQEMGARAPRGVLIVGERGTGKTSLALAIAAEARVPV------------ 516 (979)
Q Consensus 449 ~~~~~f~DIvGleevke~L~eiV~~L~~p~~f~~lG~~~P~gVLL~GPPGTGKTtLArAlA~elg~~~------------ 516 (979)
..|.++++|+|++++++.|...+.. .+.|..+||+||+|+||+++|.++|+.+-+.-
T Consensus 13 ~~P~~~~~iiGq~~~~~~L~~~~~~-----------~rl~HA~Lf~Gp~G~GK~~lA~~~A~~Llc~~~~~~~~~~~~~~ 81 (365)
T PRK07471 13 PHPRETTALFGHAAAEAALLDAYRS-----------GRLHHAWLIGGPQGIGKATLAYRMARFLLATPPPGGDGAVPPPT 81 (365)
T ss_pred CCCCchhhccChHHHHHHHHHHHHc-----------CCCCceEEEECCCCCCHHHHHHHHHHHHhCCCCCCCCccccccc
Confidence 4677899999999999999865532 35567899999999999999999999873211
Q ss_pred -E--Eeech---hhhhhh-----hc-----c--------cchhhHHHHHHHHH----hcCCeEEEEcCcccccccccccc
Q 035561 517 -V--NVEAQ---ELEAGL-----WV-----G--------QSASNVRELFQTAR----DLAPVIIFVEDFDLFAGVRGQFI 568 (979)
Q Consensus 517 -i--~Is~s---dL~~~~-----~v-----G--------~~~~~Ir~lF~~A~----~~aP~ILfIDEIDaL~~~r~~~~ 568 (979)
+ .-.|. .+..+. ++ + .....+|++-+.+. ...|.|++|||+|.+
T Consensus 82 ~l~~~~~c~~c~~i~~~~HPDl~~i~~~~~~~~~~~~~~I~VdqiR~l~~~~~~~~~~~~~kVviIDead~m-------- 153 (365)
T PRK07471 82 SLAIDPDHPVARRIAAGAHGGLLTLERSWNEKGKRLRTVITVDEVRELISFFGLTAAEGGWRVVIVDTADEM-------- 153 (365)
T ss_pred cccCCCCChHHHHHHccCCCCeEEEecccccccccccccccHHHHHHHHHHhCcCcccCCCEEEEEechHhc--------
Confidence 0 00011 010000 00 1 12344666555543 235789999999977
Q ss_pred CCCchhhHHHHHHHHhhhcccccCCeEEEEecccchhhchhhhhcCCceeeEeccCCCCHHHHHHHHHHHHHhccchhhh
Q 035561 569 HTKQQDHESFINQLLVELDGFEKQDGVVLMATTRNIKQIDEALQRPGRMDRIFNLQKPTQSEREKILRIAAQETMDEELI 648 (979)
Q Consensus 569 ~~~~~~~~~iln~LL~~LDg~~~~~~ViVIATTN~pe~LDpALlRpgRFd~~I~~~~Pd~eeR~~IL~~~l~~~~~~~l~ 648 (979)
.....|.||+.++.. ..+.++|.+|++++.+.|.+++ |+ ..+.|++|+.++..++|.......
T Consensus 154 ------~~~aanaLLK~LEep--p~~~~~IL~t~~~~~llpti~S--Rc-~~i~l~~l~~~~i~~~L~~~~~~~------ 216 (365)
T PRK07471 154 ------NANAANALLKVLEEP--PARSLFLLVSHAPARLLPTIRS--RC-RKLRLRPLAPEDVIDALAAAGPDL------ 216 (365)
T ss_pred ------CHHHHHHHHHHHhcC--CCCeEEEEEECCchhchHHhhc--cc-eEEECCCCCHHHHHHHHHHhcccC------
Confidence 345677888888753 3455677788889999999988 54 689999999999999998764221
Q ss_pred hhhhHHHHHHHcCCCCH
Q 035561 649 DLVDWRKVAEKTALLRP 665 (979)
Q Consensus 649 ~dvdL~~LA~~T~Gfsg 665 (979)
....+..+++.+.|-.+
T Consensus 217 ~~~~~~~l~~~s~Gsp~ 233 (365)
T PRK07471 217 PDDPRAALAALAEGSVG 233 (365)
T ss_pred CHHHHHHHHHHcCCCHH
Confidence 11123566777766333
No 147
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=99.14 E-value=2.1e-10 Score=108.13 Aligned_cols=127 Identities=26% Similarity=0.353 Sum_probs=84.3
Q ss_pred CceeEecCCCCCChHHHHHHHHHHcCCC---EEEeechhhhhh-------------hhcccchhhHHHHHHHHHhcCCeE
Q 035561 488 PRGVLIVGERGTGKTSLALAIAAEARVP---VVNVEAQELEAG-------------LWVGQSASNVRELFQTARDLAPVI 551 (979)
Q Consensus 488 P~gVLL~GPPGTGKTtLArAlA~elg~~---~i~Is~sdL~~~-------------~~vG~~~~~Ir~lF~~A~~~aP~I 551 (979)
+..++|+||||||||++++.+|..+..+ ++.++++..... ..........+..+..+....|++
T Consensus 2 ~~~~~l~G~~G~GKTtl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 81 (148)
T smart00382 2 GEVILIVGPPGSGKTTLARALARELGPPGGGVIYIDGEDILEEVLDQLLLIIVGGKKASGSGELRLRLALALARKLKPDV 81 (148)
T ss_pred CCEEEEECCCCCcHHHHHHHHHhccCCCCCCEEEECCEEccccCHHHHHhhhhhccCCCCCHHHHHHHHHHHHHhcCCCE
Confidence 4579999999999999999999999775 888888754311 122345667778889998878899
Q ss_pred EEEcCccccccccccccCCCchhhHHHHHHH--HhhhcccccCCeEEEEecccc-hhhchhhhhcCCceeeEeccCCC
Q 035561 552 IFVEDFDLFAGVRGQFIHTKQQDHESFINQL--LVELDGFEKQDGVVLMATTRN-IKQIDEALQRPGRMDRIFNLQKP 626 (979)
Q Consensus 552 LfIDEIDaL~~~r~~~~~~~~~~~~~iln~L--L~~LDg~~~~~~ViVIATTN~-pe~LDpALlRpgRFd~~I~~~~P 626 (979)
|+|||++.+..... ....... ..............+|+++|. ....+..+.+ |++..+.++.+
T Consensus 82 iiiDei~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~--~~~~~~~~~~~ 147 (148)
T smart00382 82 LILDEITSLLDAEQ----------EALLLLLEELRLLLLLKSEKNLTVILTTNDEKDLGPALLRR--RFDRRIVLLLI 147 (148)
T ss_pred EEEECCcccCCHHH----------HHHHHhhhhhHHHHHHHhcCCCEEEEEeCCCccCchhhhhh--ccceEEEecCC
Confidence 99999998854221 0000000 000011123345778888886 3444555555 88888887665
No 148
>PHA02244 ATPase-like protein
Probab=99.14 E-value=9.8e-10 Score=124.41 Aligned_cols=131 Identities=18% Similarity=0.210 Sum_probs=83.3
Q ss_pred ceeEecCCCCCChHHHHHHHHHHcCCCEEEeechhhhhhh--hcccchhhHHHHHHHHHhcCCeEEEEcCcccccccccc
Q 035561 489 RGVLIVGERGTGKTSLALAIAAEARVPVVNVEAQELEAGL--WVGQSASNVRELFQTARDLAPVIIFVEDFDLFAGVRGQ 566 (979)
Q Consensus 489 ~gVLL~GPPGTGKTtLArAlA~elg~~~i~Is~sdL~~~~--~vG~~~~~Ir~lF~~A~~~aP~ILfIDEIDaL~~~r~~ 566 (979)
.+|||+||||||||++|+++|..++.|++.+++..-.... +......-...-|-.|.. .+++|+|||++.+.+
T Consensus 120 ~PVLL~GppGtGKTtLA~aLA~~lg~pfv~In~l~d~~~L~G~i~~~g~~~dgpLl~A~~-~GgvLiLDEId~a~p---- 194 (383)
T PHA02244 120 IPVFLKGGAGSGKNHIAEQIAEALDLDFYFMNAIMDEFELKGFIDANGKFHETPFYEAFK-KGGLFFIDEIDASIP---- 194 (383)
T ss_pred CCEEEECCCCCCHHHHHHHHHHHhCCCEEEEecChHHHhhcccccccccccchHHHHHhh-cCCEEEEeCcCcCCH----
Confidence 4599999999999999999999999999999853100000 111111111122333332 578999999997632
Q ss_pred ccCCCchhhHHHHHHHHh-----hhcc-cccCCeEEEEecccch-----------hhchhhhhcCCceeeEeccCCCCHH
Q 035561 567 FIHTKQQDHESFINQLLV-----ELDG-FEKQDGVVLMATTRNI-----------KQIDEALQRPGRMDRIFNLQKPTQS 629 (979)
Q Consensus 567 ~~~~~~~~~~~iln~LL~-----~LDg-~~~~~~ViVIATTN~p-----------e~LDpALlRpgRFd~~I~~~~Pd~e 629 (979)
.....++.++. ..++ +....++.+|+|+|.+ ..+++++++ ||- .|+++.|+.
T Consensus 195 -------~vq~~L~~lLd~r~l~l~g~~i~~h~~FRlIATsN~~~~G~~~~y~G~k~L~~AllD--RFv-~I~~dyp~~- 263 (383)
T PHA02244 195 -------EALIIINSAIANKFFDFADERVTAHEDFRVISAGNTLGKGADHIYVARNKIDGATLD--RFA-PIEFDYDEK- 263 (383)
T ss_pred -------HHHHHHHHHhccCeEEecCcEEecCCCEEEEEeeCCCccCcccccCCCcccCHHHHh--hcE-EeeCCCCcH-
Confidence 12233333332 1111 1234678999999973 578999999 995 799999984
Q ss_pred HHHHHH
Q 035561 630 EREKIL 635 (979)
Q Consensus 630 eR~~IL 635 (979)
....|.
T Consensus 264 ~E~~i~ 269 (383)
T PHA02244 264 IEHLIS 269 (383)
T ss_pred HHHHHh
Confidence 333444
No 149
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=99.13 E-value=9e-10 Score=138.26 Aligned_cols=195 Identities=19% Similarity=0.220 Sum_probs=127.7
Q ss_pred CcccCcHHHHHHHHHHHHhhcChhHHHhcCC----CCCceeEecCCCCCChHHHHHHHHHHc---CCCEEEeechhhhhh
Q 035561 455 KDFASVESMREEINEVVAFLQNPSAFQEMGA----RAPRGVLIVGERGTGKTSLALAIAAEA---RVPVVNVEAQELEAG 527 (979)
Q Consensus 455 ~DIvGleevke~L~eiV~~L~~p~~f~~lG~----~~P~gVLL~GPPGTGKTtLArAlA~el---g~~~i~Is~sdL~~~ 527 (979)
+.|+|++++.+.+.+.+.... .|+ ++...+||+||||||||++|+++|..+ +.+++.++++++...
T Consensus 565 ~~v~GQ~~av~~v~~~i~~~~-------~gl~~~~~p~~~~Lf~Gp~GvGKt~lA~~La~~l~~~~~~~i~~d~s~~~~~ 637 (852)
T TIGR03346 565 ERVVGQDEAVEAVSDAIRRSR-------AGLSDPNRPIGSFLFLGPTGVGKTELAKALAEFLFDDEDAMVRIDMSEYMEK 637 (852)
T ss_pred cccCCChHHHHHHHHHHHHHh-------ccCCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHhcCCCCcEEEEechhhccc
Confidence 468999999988887765421 122 223468999999999999999999987 568999999876422
Q ss_pred h-----------hcccchhhHHHHHHHHHhcCCeEEEEcCccccccccccccCCCchhhHHHHHHHHhhhccc--c----
Q 035561 528 L-----------WVGQSASNVRELFQTARDLAPVIIFVEDFDLFAGVRGQFIHTKQQDHESFINQLLVELDGF--E---- 590 (979)
Q Consensus 528 ~-----------~vG~~~~~Ir~lF~~A~~~aP~ILfIDEIDaL~~~r~~~~~~~~~~~~~iln~LL~~LDg~--~---- 590 (979)
. |+|..+ -..+....+....+|||||||+.+ +..+.+.|+..|+.= .
T Consensus 638 ~~~~~l~g~~~g~~g~~~--~g~l~~~v~~~p~~vlllDeieka--------------~~~v~~~Ll~~l~~g~l~d~~g 701 (852)
T TIGR03346 638 HSVARLIGAPPGYVGYEE--GGQLTEAVRRKPYSVVLFDEVEKA--------------HPDVFNVLLQVLDDGRLTDGQG 701 (852)
T ss_pred chHHHhcCCCCCccCccc--ccHHHHHHHcCCCcEEEEeccccC--------------CHHHHHHHHHHHhcCceecCCC
Confidence 1 112111 122333444555689999999866 345667777776531 1
Q ss_pred ---cCCeEEEEecccchhh-------------------------chhhhhcCCceeeEeccCCCCHHHHHHHHHHHHHhc
Q 035561 591 ---KQDGVVLMATTRNIKQ-------------------------IDEALQRPGRMDRIFNLQKPTQSEREKILRIAAQET 642 (979)
Q Consensus 591 ---~~~~ViVIATTN~pe~-------------------------LDpALlRpgRFd~~I~~~~Pd~eeR~~IL~~~l~~~ 642 (979)
+-.+.+||+|||.... +.|.|+. |+|.++.|.+++.++..+|+...+...
T Consensus 702 ~~vd~rn~iiI~TSn~g~~~~~~~~~~~~~~~~~~~~~~~~~~~F~pel~~--Rid~IivF~PL~~e~l~~I~~l~L~~l 779 (852)
T TIGR03346 702 RTVDFRNTVIIMTSNLGSQFIQELAGGDDYEEMREAVMEVLRAHFRPEFLN--RIDEIVVFHPLGREQIARIVEIQLGRL 779 (852)
T ss_pred eEEecCCcEEEEeCCcchHhHhhhcccccHHHHHHHHHHHHHhhcCHHHhc--CcCeEEecCCcCHHHHHHHHHHHHHHH
Confidence 1245788899998211 3466776 999999999999999999999887642
Q ss_pred cc-------hhhhhhhhHHHHHHHc--CCCCHHHHHHHHHH
Q 035561 643 MD-------EELIDLVDWRKVAEKT--ALLRPIELKLVPVA 674 (979)
Q Consensus 643 ~~-------~~l~~dvdL~~LA~~T--~GfsgaDL~~Lv~a 674 (979)
.. ....++..++.|++.. +.+....|+++++.
T Consensus 780 ~~~l~~~~~~l~i~~~a~~~L~~~~~~~~~gaR~L~~~i~~ 820 (852)
T TIGR03346 780 RKRLAERKITLELSDAALDFLAEAGYDPVYGARPLKRAIQR 820 (852)
T ss_pred HHHHHHCCCeecCCHHHHHHHHHhCCCCCCCchhHHHHHHH
Confidence 11 0112333445555542 24455666666543
No 150
>COG0714 MoxR-like ATPases [General function prediction only]
Probab=99.13 E-value=4.7e-10 Score=126.25 Aligned_cols=134 Identities=25% Similarity=0.286 Sum_probs=89.8
Q ss_pred ceeEecCCCCCChHHHHHHHHHHcCCCEEEeechhhh-hhhhcccchhhHHH----HHHHHHh--cCC--eEEEEcCccc
Q 035561 489 RGVLIVGERGTGKTSLALAIAAEARVPVVNVEAQELE-AGLWVGQSASNVRE----LFQTARD--LAP--VIIFVEDFDL 559 (979)
Q Consensus 489 ~gVLL~GPPGTGKTtLArAlA~elg~~~i~Is~sdL~-~~~~vG~~~~~Ir~----lF~~A~~--~aP--~ILfIDEIDa 559 (979)
.++||-||||||||++|+++|..++.+|+.++|.... .+...|...-..+. .|..... ... +|+|+|||+.
T Consensus 44 ~~vll~G~PG~gKT~la~~lA~~l~~~~~~i~~t~~l~p~d~~G~~~~~~~~~~~~~~~~~~gpl~~~~~~ill~DEInr 123 (329)
T COG0714 44 GHVLLEGPPGVGKTLLARALARALGLPFVRIQCTPDLLPSDLLGTYAYAALLLEPGEFRFVPGPLFAAVRVILLLDEINR 123 (329)
T ss_pred CCEEEECCCCccHHHHHHHHHHHhCCCeEEEecCCCCCHHHhcCchhHhhhhccCCeEEEecCCcccccceEEEEecccc
Confidence 4699999999999999999999999999999997433 22222222111110 0000000 001 4999999985
Q ss_pred cccccccccCCCchhhHHHHHHHHhhhcc----------cccCCeEEEEeccc-----chhhchhhhhcCCceeeEeccC
Q 035561 560 FAGVRGQFIHTKQQDHESFINQLLVELDG----------FEKQDGVVLMATTR-----NIKQIDEALQRPGRMDRIFNLQ 624 (979)
Q Consensus 560 L~~~r~~~~~~~~~~~~~iln~LL~~LDg----------~~~~~~ViVIATTN-----~pe~LDpALlRpgRFd~~I~~~ 624 (979)
. ...+.+.|+..|+. +.-...++|+||+| ....+++|+++ ||...+.++
T Consensus 124 a--------------~p~~q~aLl~~l~e~~vtv~~~~~~~~~~~f~viaT~Np~e~~g~~~l~eA~ld--Rf~~~~~v~ 187 (329)
T COG0714 124 A--------------PPEVQNALLEALEERQVTVPGLTTIRLPPPFIVIATQNPGEYEGTYPLPEALLD--RFLLRIYVD 187 (329)
T ss_pred C--------------CHHHHHHHHHHHhCcEEEECCcCCcCCCCCCEEEEccCccccCCCcCCCHHHHh--hEEEEEecC
Confidence 4 24456666666665 22346789999999 45678999999 999999999
Q ss_pred CCCHHH-HHHHHHHH
Q 035561 625 KPTQSE-REKILRIA 638 (979)
Q Consensus 625 ~Pd~ee-R~~IL~~~ 638 (979)
.|+.++ ...++...
T Consensus 188 yp~~~~e~~~i~~~~ 202 (329)
T COG0714 188 YPDSEEEERIILARV 202 (329)
T ss_pred CCCchHHHHHHHHhC
Confidence 995544 44444443
No 151
>TIGR00678 holB DNA polymerase III, delta' subunit. At position 126-127 of the seed alignment, this family lacks the HM motif of gamma/tau; at 132 it has a near-invariant A vs. an invariant F in gamma/tau.
Probab=99.13 E-value=7.7e-10 Score=114.40 Aligned_cols=150 Identities=19% Similarity=0.205 Sum_probs=99.4
Q ss_pred CCCceeEecCCCCCChHHHHHHHHHHcCCC-------E-EEeechhhhhhhh----------cccchhhHHHHHHHHHh-
Q 035561 486 RAPRGVLIVGERGTGKTSLALAIAAEARVP-------V-VNVEAQELEAGLW----------VGQSASNVRELFQTARD- 546 (979)
Q Consensus 486 ~~P~gVLL~GPPGTGKTtLArAlA~elg~~-------~-i~Is~sdL~~~~~----------vG~~~~~Ir~lF~~A~~- 546 (979)
+.|..+||+||+|+|||++|+++++.+... . ...+|..+....+ ...+...++++.+.+..
T Consensus 12 ~~~~~~L~~G~~G~gkt~~a~~~~~~l~~~~~~~~~~c~~~~~c~~~~~~~~~d~~~~~~~~~~~~~~~i~~i~~~~~~~ 91 (188)
T TIGR00678 12 RLAHAYLFAGPEGVGKELLALALAKALLCEQPGGGEPCGECPSCRLIEAGNHPDLHRLEPEGQSIKVDQVRELVEFLSRT 91 (188)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCCCcEEEeccccCcCCHHHHHHHHHHHccC
Confidence 456789999999999999999999987432 0 0001111100000 01223566666766654
Q ss_pred ---cCCeEEEEcCccccccccccccCCCchhhHHHHHHHHhhhcccccCCeEEEEecccchhhchhhhhcCCceeeEecc
Q 035561 547 ---LAPVIIFVEDFDLFAGVRGQFIHTKQQDHESFINQLLVELDGFEKQDGVVLMATTRNIKQIDEALQRPGRMDRIFNL 623 (979)
Q Consensus 547 ---~aP~ILfIDEIDaL~~~r~~~~~~~~~~~~~iln~LL~~LDg~~~~~~ViVIATTN~pe~LDpALlRpgRFd~~I~~ 623 (979)
....|++|||+|.+. ....+.||..|+... +..++|.+||.+..+.+++++ |+ ..+.|
T Consensus 92 ~~~~~~kviiide~~~l~--------------~~~~~~Ll~~le~~~--~~~~~il~~~~~~~l~~~i~s--r~-~~~~~ 152 (188)
T TIGR00678 92 PQESGRRVVIIEDAERMN--------------EAAANALLKTLEEPP--PNTLFILITPSPEKLLPTIRS--RC-QVLPF 152 (188)
T ss_pred cccCCeEEEEEechhhhC--------------HHHHHHHHHHhcCCC--CCeEEEEEECChHhChHHHHh--hc-EEeeC
Confidence 235799999999873 234567888887632 344555566777999999998 55 58999
Q ss_pred CCCCHHHHHHHHHHHHHhccchhhhhhhhHHHHHHHcCC
Q 035561 624 QKPTQSEREKILRIAAQETMDEELIDLVDWRKVAEKTAL 662 (979)
Q Consensus 624 ~~Pd~eeR~~IL~~~l~~~~~~~l~~dvdL~~LA~~T~G 662 (979)
++|+.++..++++.. . .+...+..++..+.|
T Consensus 153 ~~~~~~~~~~~l~~~--g------i~~~~~~~i~~~~~g 183 (188)
T TIGR00678 153 PPLSEEALLQWLIRQ--G------ISEEAAELLLALAGG 183 (188)
T ss_pred CCCCHHHHHHHHHHc--C------CCHHHHHHHHHHcCC
Confidence 999999999998876 1 123346666766665
No 152
>CHL00095 clpC Clp protease ATP binding subunit
Probab=99.12 E-value=6e-10 Score=139.37 Aligned_cols=162 Identities=19% Similarity=0.283 Sum_probs=113.6
Q ss_pred CcccCcHHHHHHHHHHHHhhcChhHHHhcCC---CCCc-eeEecCCCCCChHHHHHHHHHHc---CCCEEEeechhhhhh
Q 035561 455 KDFASVESMREEINEVVAFLQNPSAFQEMGA---RAPR-GVLIVGERGTGKTSLALAIAAEA---RVPVVNVEAQELEAG 527 (979)
Q Consensus 455 ~DIvGleevke~L~eiV~~L~~p~~f~~lG~---~~P~-gVLL~GPPGTGKTtLArAlA~el---g~~~i~Is~sdL~~~ 527 (979)
+.|+|++++++.+...+...+ .|+ ..|. .+||+||+|||||++|+++|+.+ +.+++.++++++...
T Consensus 509 ~~v~GQ~~ai~~l~~~i~~~~-------~gl~~~~~p~~~~lf~Gp~GvGKt~lA~~LA~~l~~~~~~~~~~d~s~~~~~ 581 (821)
T CHL00095 509 KRIIGQDEAVVAVSKAIRRAR-------VGLKNPNRPIASFLFSGPTGVGKTELTKALASYFFGSEDAMIRLDMSEYMEK 581 (821)
T ss_pred CcCcChHHHHHHHHHHHHHHh-------hcccCCCCCceEEEEECCCCCcHHHHHHHHHHHhcCCccceEEEEchhcccc
Confidence 468899999999887664321 122 2343 47999999999999999999987 468999998876421
Q ss_pred ----h-------hcccchhhHHHHHHHHHhcCCeEEEEcCccccccccccccCCCchhhHHHHHHHHhhhcccc------
Q 035561 528 ----L-------WVGQSASNVRELFQTARDLAPVIIFVEDFDLFAGVRGQFIHTKQQDHESFINQLLVELDGFE------ 590 (979)
Q Consensus 528 ----~-------~vG~~~~~Ir~lF~~A~~~aP~ILfIDEIDaL~~~r~~~~~~~~~~~~~iln~LL~~LDg~~------ 590 (979)
. |+|..+ ...+.+..+.+..+||+|||+|.. +..+.+.|++.||.-.
T Consensus 582 ~~~~~l~g~~~gyvg~~~--~~~l~~~~~~~p~~VvllDeieka--------------~~~v~~~Llq~le~g~~~d~~g 645 (821)
T CHL00095 582 HTVSKLIGSPPGYVGYNE--GGQLTEAVRKKPYTVVLFDEIEKA--------------HPDIFNLLLQILDDGRLTDSKG 645 (821)
T ss_pred ccHHHhcCCCCcccCcCc--cchHHHHHHhCCCeEEEECChhhC--------------CHHHHHHHHHHhccCceecCCC
Confidence 1 222222 123455555555599999999966 3556777887777411
Q ss_pred ---cCCeEEEEecccchhh-------------------------------------chhhhhcCCceeeEeccCCCCHHH
Q 035561 591 ---KQDGVVLMATTRNIKQ-------------------------------------IDEALQRPGRMDRIFNLQKPTQSE 630 (979)
Q Consensus 591 ---~~~~ViVIATTN~pe~-------------------------------------LDpALlRpgRFd~~I~~~~Pd~ee 630 (979)
...+.++|.|||.... +.|.|++ |+|.+|.|.+.+.++
T Consensus 646 ~~v~~~~~i~I~Tsn~g~~~i~~~~~~~gf~~~~~~~~~~~~~~~~~~~~~~~~~~f~pefln--Rid~ii~F~pL~~~~ 723 (821)
T CHL00095 646 RTIDFKNTLIIMTSNLGSKVIETNSGGLGFELSENQLSEKQYKRLSNLVNEELKQFFRPEFLN--RLDEIIVFRQLTKND 723 (821)
T ss_pred cEEecCceEEEEeCCcchHHHHhhccccCCcccccccccccHHHHHHHHHHHHHHhcCHHHhc--cCCeEEEeCCCCHHH
Confidence 1246888899886321 2356676 888889999999999
Q ss_pred HHHHHHHHHHh
Q 035561 631 REKILRIAAQE 641 (979)
Q Consensus 631 R~~IL~~~l~~ 641 (979)
..+|++..+.+
T Consensus 724 l~~Iv~~~l~~ 734 (821)
T CHL00095 724 VWEIAEIMLKN 734 (821)
T ss_pred HHHHHHHHHHH
Confidence 99998887764
No 153
>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=99.12 E-value=1e-10 Score=114.73 Aligned_cols=111 Identities=23% Similarity=0.302 Sum_probs=69.7
Q ss_pred eeEecCCCCCChHHHHHHHHHHcCCCEEEeechhhhhh-hhcccchhh------HHHHHHHHHhcCCeEEEEcCcccccc
Q 035561 490 GVLIVGERGTGKTSLALAIAAEARVPVVNVEAQELEAG-LWVGQSASN------VRELFQTARDLAPVIIFVEDFDLFAG 562 (979)
Q Consensus 490 gVLL~GPPGTGKTtLArAlA~elg~~~i~Is~sdL~~~-~~vG~~~~~------Ir~lF~~A~~~aP~ILfIDEIDaL~~ 562 (979)
+|||+||||||||++|+.+|+.++.+++.++++..... ...|.-... ....+..+. ..++|++|||++..
T Consensus 1 ~vlL~G~~G~GKt~l~~~la~~~~~~~~~i~~~~~~~~~dl~g~~~~~~~~~~~~~~~l~~a~-~~~~il~lDEin~a-- 77 (139)
T PF07728_consen 1 PVLLVGPPGTGKTTLARELAALLGRPVIRINCSSDTTEEDLIGSYDPSNGQFEFKDGPLVRAM-RKGGILVLDEINRA-- 77 (139)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHHTCEEEEEE-TTTSTHHHHHCEEET-TTTTCEEE-CCCTTH-HEEEEEEESSCGG---
T ss_pred CEEEECCCCCCHHHHHHHHHHHhhcceEEEEeccccccccceeeeeecccccccccccccccc-cceeEEEECCcccC--
Confidence 58999999999999999999999999999998764311 111211100 000001111 15799999999854
Q ss_pred ccccccCCCchhhHHHHHHHHhhhccc-----------ccCC------eEEEEecccchh----hchhhhhcCCce
Q 035561 563 VRGQFIHTKQQDHESFINQLLVELDGF-----------EKQD------GVVLMATTRNIK----QIDEALQRPGRM 617 (979)
Q Consensus 563 ~r~~~~~~~~~~~~~iln~LL~~LDg~-----------~~~~------~ViVIATTN~pe----~LDpALlRpgRF 617 (979)
...+++.|+..+++- .... ++.+|||+|..+ .++++|++ ||
T Consensus 78 ------------~~~v~~~L~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~t~N~~~~~~~~l~~al~~--Rf 139 (139)
T PF07728_consen 78 ------------PPEVLESLLSLLEERRIQLPEGGEEIKEPNNDLASPNFRIIATMNPRDKGRKELSPALLD--RF 139 (139)
T ss_dssp -------------HHHHHTTHHHHSSSEEEE-TSSSEEE--TT------EEEEEEESSST--TTTTCHHHHT--T-
T ss_pred ------------CHHHHHHHHHHHhhCcccccCCCcEEecCcccccccceEEEEEEcCCCCCcCcCCHHHHh--hC
Confidence 233444444444431 0111 489999999988 89999999 87
No 154
>PRK09112 DNA polymerase III subunit delta'; Validated
Probab=99.12 E-value=1.2e-09 Score=124.31 Aligned_cols=183 Identities=14% Similarity=0.156 Sum_probs=120.8
Q ss_pred CCCCCCCcccCcHHHHHHHHHHHHhhcChhHHHhcCCCCCceeEecCCCCCChHHHHHHHHHHcCC-------CEEEe-e
Q 035561 449 NPPIPLKDFASVESMREEINEVVAFLQNPSAFQEMGARAPRGVLIVGERGTGKTSLALAIAAEARV-------PVVNV-E 520 (979)
Q Consensus 449 ~~~~~f~DIvGleevke~L~eiV~~L~~p~~f~~lG~~~P~gVLL~GPPGTGKTtLArAlA~elg~-------~~i~I-s 520 (979)
..|..+++++|++++++.|...+. ..+.|..+||+||+|+|||++|+.+|+.+.. +.... .
T Consensus 17 ~~P~~~~~l~Gh~~a~~~L~~a~~-----------~grl~ha~L~~G~~G~GKttlA~~lA~~Llc~~~~~~~~~~~~~~ 85 (351)
T PRK09112 17 PSPSENTRLFGHEEAEAFLAQAYR-----------EGKLHHALLFEGPEGIGKATLAFHLANHILSHPDPAEAPETLADP 85 (351)
T ss_pred CCCCchhhccCcHHHHHHHHHHHH-----------cCCCCeeEeeECCCCCCHHHHHHHHHHHHcCCCccccCccccCCC
Confidence 457789999999999999986552 2345678999999999999999999998854 11111 1
Q ss_pred ---ch---hhhhhh-----hc-------------ccchhhHHHHHHHHH----hcCCeEEEEcCccccccccccccCCCc
Q 035561 521 ---AQ---ELEAGL-----WV-------------GQSASNVRELFQTAR----DLAPVIIFVEDFDLFAGVRGQFIHTKQ 572 (979)
Q Consensus 521 ---~s---dL~~~~-----~v-------------G~~~~~Ir~lF~~A~----~~aP~ILfIDEIDaL~~~r~~~~~~~~ 572 (979)
|. .+..+. +. ..+...+|.+-+... .....|++|||+|.+
T Consensus 86 ~~~c~~c~~i~~~~hPdl~~l~~~~~~~~~~~~~~I~vd~iR~l~~~l~~~~~~g~~rVviIDeAd~l------------ 153 (351)
T PRK09112 86 DPASPVWRQIAQGAHPNLLHITRPFDEKTGKFKTAITVDEIRRVGHFLSQTSGDGNWRIVIIDPADDM------------ 153 (351)
T ss_pred CCCCHHHHHHHcCCCCCEEEeecccccccccccccCCHHHHHHHHHHhhhccccCCceEEEEEchhhc------------
Confidence 11 110000 00 111234554444332 224579999999988
Q ss_pred hhhHHHHHHHHhhhcccccCCeEEEEecccchhhchhhhhcCCceeeEeccCCCCHHHHHHHHHHHHHhccchhhhhhhh
Q 035561 573 QDHESFINQLLVELDGFEKQDGVVLMATTRNIKQIDEALQRPGRMDRIFNLQKPTQSEREKILRIAAQETMDEELIDLVD 652 (979)
Q Consensus 573 ~~~~~iln~LL~~LDg~~~~~~ViVIATTN~pe~LDpALlRpgRFd~~I~~~~Pd~eeR~~IL~~~l~~~~~~~l~~dvd 652 (979)
.....|.||+.|+... .+.++|..|+.++.+.|.+++ |+ ..+.|++|+.++..++|+...... . .++..
T Consensus 154 --~~~aanaLLk~LEEpp--~~~~fiLit~~~~~llptIrS--Rc-~~i~l~pl~~~~~~~~L~~~~~~~---~-~~~~~ 222 (351)
T PRK09112 154 --NRNAANAILKTLEEPP--ARALFILISHSSGRLLPTIRS--RC-QPISLKPLDDDELKKALSHLGSSQ---G-SDGEI 222 (351)
T ss_pred --CHHHHHHHHHHHhcCC--CCceEEEEECChhhccHHHHh--hc-cEEEecCCCHHHHHHHHHHhhccc---C-CCHHH
Confidence 2345677888888633 344555556778999999998 66 699999999999999998743221 1 22333
Q ss_pred HHHHHHHcCCCCH
Q 035561 653 WRKVAEKTALLRP 665 (979)
Q Consensus 653 L~~LA~~T~Gfsg 665 (979)
+..+++.+.|-..
T Consensus 223 ~~~i~~~s~G~pr 235 (351)
T PRK09112 223 TEALLQRSKGSVR 235 (351)
T ss_pred HHHHHHHcCCCHH
Confidence 5667777766433
No 155
>PRK09087 hypothetical protein; Validated
Probab=99.11 E-value=1.6e-09 Score=116.11 Aligned_cols=151 Identities=14% Similarity=0.156 Sum_probs=97.9
Q ss_pred eeEecCCCCCChHHHHHHHHHHcCCCEEEeechhhhhhhhcccchhhHHHHHHHHHhcCCeEEEEcCccccccccccccC
Q 035561 490 GVLIVGERGTGKTSLALAIAAEARVPVVNVEAQELEAGLWVGQSASNVRELFQTARDLAPVIIFVEDFDLFAGVRGQFIH 569 (979)
Q Consensus 490 gVLL~GPPGTGKTtLArAlA~elg~~~i~Is~sdL~~~~~vG~~~~~Ir~lF~~A~~~aP~ILfIDEIDaL~~~r~~~~~ 569 (979)
.++|+||+|||||+|++++|+..+.. +++..++... .+..... .+|+|||++.+..
T Consensus 46 ~l~l~G~~GsGKThLl~~~~~~~~~~--~i~~~~~~~~------------~~~~~~~---~~l~iDDi~~~~~------- 101 (226)
T PRK09087 46 VVVLAGPVGSGKTHLASIWREKSDAL--LIHPNEIGSD------------AANAAAE---GPVLIEDIDAGGF------- 101 (226)
T ss_pred eEEEECCCCCCHHHHHHHHHHhcCCE--EecHHHcchH------------HHHhhhc---CeEEEECCCCCCC-------
Confidence 48999999999999999999887655 4444443211 1111111 5788999997621
Q ss_pred CCchhhHHHHHHHHhhhcccccCCeEEEEecccchhhc---hhhhhcCCcee--eEeccCCCCHHHHHHHHHHHHHhccc
Q 035561 570 TKQQDHESFINQLLVELDGFEKQDGVVLMATTRNIKQI---DEALQRPGRMD--RIFNLQKPTQSEREKILRIAAQETMD 644 (979)
Q Consensus 570 ~~~~~~~~iln~LL~~LDg~~~~~~ViVIATTN~pe~L---DpALlRpgRFd--~~I~~~~Pd~eeR~~IL~~~l~~~~~ 644 (979)
... .|...++.+......+|++++..|..+ .|.|++ ||. ..+++.+|+.++|.+|++.+++...
T Consensus 102 -~~~-------~lf~l~n~~~~~g~~ilits~~~p~~~~~~~~dL~S--Rl~~gl~~~l~~pd~e~~~~iL~~~~~~~~- 170 (226)
T PRK09087 102 -DET-------GLFHLINSVRQAGTSLLMTSRLWPSSWNVKLPDLKS--RLKAATVVEIGEPDDALLSQVIFKLFADRQ- 170 (226)
T ss_pred -CHH-------HHHHHHHHHHhCCCeEEEECCCChHHhccccccHHH--HHhCCceeecCCCCHHHHHHHHHHHHHHcC-
Confidence 111 233333333333456777776665533 678888 775 7899999999999999999998652
Q ss_pred hhhhhhhhHHHHHHHcCCCCHHHHHHHHHHHhh
Q 035561 645 EELIDLVDWRKVAEKTALLRPIELKLVPVALEG 677 (979)
Q Consensus 645 ~~l~~dvdL~~LA~~T~GfsgaDL~~Lv~aa~~ 677 (979)
...++..+..|+++.+| +...+..+++.+..
T Consensus 171 -~~l~~ev~~~La~~~~r-~~~~l~~~l~~L~~ 201 (226)
T PRK09087 171 -LYVDPHVVYYLVSRMER-SLFAAQTIVDRLDR 201 (226)
T ss_pred -CCCCHHHHHHHHHHhhh-hHHHHHHHHHHHHH
Confidence 23455668889998885 33333333344433
No 156
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=99.11 E-value=2.8e-10 Score=119.97 Aligned_cols=210 Identities=18% Similarity=0.215 Sum_probs=126.3
Q ss_pred cccCCCCCCCCcccCcHHHHHHHHHHHHhhcChhHHHhcCCCCCceeEecCCCCCChHHHHHHHHHHc-C----CCEEEe
Q 035561 445 KRVKNPPIPLKDFASVESMREEINEVVAFLQNPSAFQEMGARAPRGVLIVGERGTGKTSLALAIAAEA-R----VPVVNV 519 (979)
Q Consensus 445 ~~v~~~~~~f~DIvGleevke~L~eiV~~L~~p~~f~~lG~~~P~gVLL~GPPGTGKTtLArAlA~el-g----~~~i~I 519 (979)
+.-+++|..+.||+|.++..+.|.-+...-.. | ++++.|||||||||-+.++|+++ | --++++
T Consensus 17 wVeKYrP~~l~dIVGNe~tv~rl~via~~gnm-----------P-~liisGpPG~GKTTsi~~LAr~LLG~~~ke~vLEL 84 (333)
T KOG0991|consen 17 WVEKYRPSVLQDIVGNEDTVERLSVIAKEGNM-----------P-NLIISGPPGTGKTTSILCLARELLGDSYKEAVLEL 84 (333)
T ss_pred HHHhhCchHHHHhhCCHHHHHHHHHHHHcCCC-----------C-ceEeeCCCCCchhhHHHHHHHHHhChhhhhHhhhc
Confidence 33468889999999999999998855432222 2 59999999999999999999987 3 356778
Q ss_pred echhhhhhhhcccchhhHHHHHHHHHh-cCC---eEEEEcCccccccccccccCCCchhhHHHHHHHHhhhcccccCCeE
Q 035561 520 EAQELEAGLWVGQSASNVRELFQTARD-LAP---VIIFVEDFDLFAGVRGQFIHTKQQDHESFINQLLVELDGFEKQDGV 595 (979)
Q Consensus 520 s~sdL~~~~~vG~~~~~Ir~lF~~A~~-~aP---~ILfIDEIDaL~~~r~~~~~~~~~~~~~iln~LL~~LDg~~~~~~V 595 (979)
|+|+- +-......+++ .|.+-+- ..| .|+++||+|++. .+.++...+++.- +++ ..
T Consensus 85 NASde---RGIDvVRn~IK-~FAQ~kv~lp~grhKIiILDEADSMT-------~gAQQAlRRtMEi-------yS~--tt 144 (333)
T KOG0991|consen 85 NASDE---RGIDVVRNKIK-MFAQKKVTLPPGRHKIIILDEADSMT-------AGAQQALRRTMEI-------YSN--TT 144 (333)
T ss_pred cCccc---cccHHHHHHHH-HHHHhhccCCCCceeEEEeeccchhh-------hHHHHHHHHHHHH-------Hcc--cc
Confidence 88762 21222223333 3444332 223 699999999874 2233333343322 222 23
Q ss_pred EEEecccchhhchhhhhcCCceeeEeccCCCCHHHHHHHHHHHHHhccchhhhhhhhHHHHHHHcCCCCHHHHHHHHHHH
Q 035561 596 VLMATTRNIKQIDEALQRPGRMDRIFNLQKPTQSEREKILRIAAQETMDEELIDLVDWRKVAEKTALLRPIELKLVPVAL 675 (979)
Q Consensus 596 iVIATTN~pe~LDpALlRpgRFd~~I~~~~Pd~eeR~~IL~~~l~~~~~~~l~~dvdL~~LA~~T~GfsgaDL~~Lv~aa 675 (979)
.+..+||..+.|-+.+.++| -.+.+...+..+...=|....+... -...+.-++.+.--.+| |..+..+.+
T Consensus 145 RFalaCN~s~KIiEPIQSRC---AiLRysklsd~qiL~Rl~~v~k~Ek--v~yt~dgLeaiifta~G----DMRQalNnL 215 (333)
T KOG0991|consen 145 RFALACNQSEKIIEPIQSRC---AILRYSKLSDQQILKRLLEVAKAEK--VNYTDDGLEAIIFTAQG----DMRQALNNL 215 (333)
T ss_pred hhhhhhcchhhhhhhHHhhh---HhhhhcccCHHHHHHHHHHHHHHhC--CCCCcchHHHhhhhccc----hHHHHHHHH
Confidence 45556788777766777733 4566667776665554444444321 11223345556555555 666665666
Q ss_pred hhhhhccCCCChHHHhhhcc
Q 035561 676 EGSAFRSKFLDTDELMSYCG 695 (979)
Q Consensus 676 ~~aa~r~~~~s~~ei~~~~d 695 (979)
++..-.-..++.+.+...||
T Consensus 216 Qst~~g~g~Vn~enVfKv~d 235 (333)
T KOG0991|consen 216 QSTVNGFGLVNQENVFKVCD 235 (333)
T ss_pred HHHhccccccchhhhhhccC
Confidence 66555445555555555553
No 157
>COG1219 ClpX ATP-dependent protease Clp, ATPase subunit [Posttranslational modification, protein turnover, chaperones]
Probab=99.10 E-value=2.3e-10 Score=125.17 Aligned_cols=131 Identities=23% Similarity=0.325 Sum_probs=91.2
Q ss_pred ccCcHHHHHHHHHHHHhhcChhHHHhcC----CC-CCceeEecCCCCCChHHHHHHHHHHcCCCEEEeechhhhhhhhcc
Q 035561 457 FASVESMREEINEVVAFLQNPSAFQEMG----AR-APRGVLIVGERGTGKTSLALAIAAEARVPVVNVEAQELEAGLWVG 531 (979)
Q Consensus 457 IvGleevke~L~eiV~~L~~p~~f~~lG----~~-~P~gVLL~GPPGTGKTtLArAlA~elg~~~i~Is~sdL~~~~~vG 531 (979)
|+|++.+|+.|.-.|. .+-+...... +. ...+|||.||.|||||+||+.+|+.+++||-.-++..|...-|+|
T Consensus 63 VIGQe~AKKvLsVAVY--NHYKRl~~~~~~~dvEL~KSNILLiGPTGsGKTlLAqTLAk~LnVPFaiADATtLTEAGYVG 140 (408)
T COG1219 63 VIGQEQAKKVLSVAVY--NHYKRLNNKEDNDDVELSKSNILLIGPTGSGKTLLAQTLAKILNVPFAIADATTLTEAGYVG 140 (408)
T ss_pred eecchhhhceeeeeeh--hHHHHHhccCCCCceeeeeccEEEECCCCCcHHHHHHHHHHHhCCCeeeccccchhhccccc
Confidence 7789988888753221 1111111111 11 125799999999999999999999999999999999998778999
Q ss_pred cchhhHHH-HHHHH----HhcCCeEEEEcCccccccccccccCCCchhhHHHHHHHHhhhccc
Q 035561 532 QSASNVRE-LFQTA----RDLAPVIIFVEDFDLFAGVRGQFIHTKQQDHESFINQLLVELDGF 589 (979)
Q Consensus 532 ~~~~~Ir~-lF~~A----~~~aP~ILfIDEIDaL~~~r~~~~~~~~~~~~~iln~LL~~LDg~ 589 (979)
+...++-. +...| .+...+|++|||||.++++....+-+.+-.-+-+-..||+.++|-
T Consensus 141 EDVENillkLlqaadydV~rAerGIIyIDEIDKIarkSeN~SITRDVSGEGVQQALLKiiEGT 203 (408)
T COG1219 141 EDVENILLKLLQAADYDVERAERGIIYIDEIDKIARKSENPSITRDVSGEGVQQALLKIIEGT 203 (408)
T ss_pred hhHHHHHHHHHHHcccCHHHHhCCeEEEechhhhhccCCCCCcccccCchHHHHHHHHHHcCc
Confidence 88776543 33333 123569999999999988765433333333345666788888874
No 158
>PRK10865 protein disaggregation chaperone; Provisional
Probab=99.09 E-value=8.3e-10 Score=138.42 Aligned_cols=162 Identities=20% Similarity=0.259 Sum_probs=111.7
Q ss_pred CCcccCcHHHHHHHHHHHHhhcChhHHHhcCC---CCC-ceeEecCCCCCChHHHHHHHHHHc---CCCEEEeechhhhh
Q 035561 454 LKDFASVESMREEINEVVAFLQNPSAFQEMGA---RAP-RGVLIVGERGTGKTSLALAIAAEA---RVPVVNVEAQELEA 526 (979)
Q Consensus 454 f~DIvGleevke~L~eiV~~L~~p~~f~~lG~---~~P-~gVLL~GPPGTGKTtLArAlA~el---g~~~i~Is~sdL~~ 526 (979)
.+.|+|++.+.+.+...+.... .|. +.| ..+||+||||||||++|+++|..+ +.+++.++|+++..
T Consensus 567 ~~~viGQ~~ai~~l~~~i~~~~-------~gl~~~~~p~~~~Lf~Gp~G~GKT~lA~aLa~~l~~~~~~~i~id~se~~~ 639 (857)
T PRK10865 567 HHRVIGQNEAVEAVSNAIRRSR-------AGLSDPNRPIGSFLFLGPTGVGKTELCKALANFMFDSDDAMVRIDMSEFME 639 (857)
T ss_pred CCeEeCCHHHHHHHHHHHHHHH-------hcccCCCCCCceEEEECCCCCCHHHHHHHHHHHhhcCCCcEEEEEhHHhhh
Confidence 4468899998888887765432 122 223 358999999999999999999987 46899999988752
Q ss_pred hh----hc-------ccchhhHHHHHHHH-HhcCCeEEEEcCccccccccccccCCCchhhHHHHHHHHhhhccc--c--
Q 035561 527 GL----WV-------GQSASNVRELFQTA-RDLAPVIIFVEDFDLFAGVRGQFIHTKQQDHESFINQLLVELDGF--E-- 590 (979)
Q Consensus 527 ~~----~v-------G~~~~~Ir~lF~~A-~~~aP~ILfIDEIDaL~~~r~~~~~~~~~~~~~iln~LL~~LDg~--~-- 590 (979)
.. .. |... ...+..+ +....+||+|||++.+ +..+.+.|+..++.- .
T Consensus 640 ~~~~~~LiG~~pgy~g~~~---~g~l~~~v~~~p~~vLllDEieka--------------~~~v~~~Ll~ile~g~l~d~ 702 (857)
T PRK10865 640 KHSVSRLVGAPPGYVGYEE---GGYLTEAVRRRPYSVILLDEVEKA--------------HPDVFNILLQVLDDGRLTDG 702 (857)
T ss_pred hhhHHHHhCCCCcccccch---hHHHHHHHHhCCCCeEEEeehhhC--------------CHHHHHHHHHHHhhCceecC
Confidence 21 11 2111 1122333 3334489999999866 234566777766531 1
Q ss_pred -----cCCeEEEEecccchh-------------------------hchhhhhcCCceeeEeccCCCCHHHHHHHHHHHHH
Q 035561 591 -----KQDGVVLMATTRNIK-------------------------QIDEALQRPGRMDRIFNLQKPTQSEREKILRIAAQ 640 (979)
Q Consensus 591 -----~~~~ViVIATTN~pe-------------------------~LDpALlRpgRFd~~I~~~~Pd~eeR~~IL~~~l~ 640 (979)
...+.++|+|||... .+.|+|+. |+|..+.|.+++.++...|++.++.
T Consensus 703 ~gr~vd~rn~iiI~TSN~g~~~~~~~~~~~~~~~~~~~~~~~~~~~f~PELln--Rld~iivF~PL~~edl~~Iv~~~L~ 780 (857)
T PRK10865 703 QGRTVDFRNTVVIMTSNLGSDLIQERFGELDYAHMKELVLGVVSHNFRPEFIN--RIDEVVVFHPLGEQHIASIAQIQLQ 780 (857)
T ss_pred CceEEeecccEEEEeCCcchHHHHHhccccchHHHHHHHHHHHcccccHHHHH--hCCeeEecCCCCHHHHHHHHHHHHH
Confidence 113467888998721 13478888 9999999999999999999998886
Q ss_pred h
Q 035561 641 E 641 (979)
Q Consensus 641 ~ 641 (979)
.
T Consensus 781 ~ 781 (857)
T PRK10865 781 R 781 (857)
T ss_pred H
Confidence 5
No 159
>PRK05564 DNA polymerase III subunit delta'; Validated
Probab=99.08 E-value=1.9e-09 Score=120.59 Aligned_cols=170 Identities=17% Similarity=0.293 Sum_probs=116.4
Q ss_pred CCCcccCcHHHHHHHHHHHHhhcChhHHHhcCCCCCceeEecCCCCCChHHHHHHHHHHcCCC--------EEEeechhh
Q 035561 453 PLKDFASVESMREEINEVVAFLQNPSAFQEMGARAPRGVLIVGERGTGKTSLALAIAAEARVP--------VVNVEAQEL 524 (979)
Q Consensus 453 ~f~DIvGleevke~L~eiV~~L~~p~~f~~lG~~~P~gVLL~GPPGTGKTtLArAlA~elg~~--------~i~Is~sdL 524 (979)
+|+||+|++.+++.|...+. ..+.|..+||+||+|+|||++|+++|+.+.+. ++.+...+
T Consensus 2 ~~~~i~g~~~~~~~l~~~~~-----------~~~~~ha~Lf~G~~G~Gk~~la~~~a~~l~c~~~~~~h~D~~~~~~~~- 69 (313)
T PRK05564 2 SFHTIIGHENIKNRIKNSII-----------KNRFSHAHIIVGEDGIGKSLLAKEIALKILGKSQQREYVDIIEFKPIN- 69 (313)
T ss_pred ChhhccCcHHHHHHHHHHHH-----------cCCCCceEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCeEEecccc-
Confidence 58999999999999876552 23456678999999999999999999987432 22222110
Q ss_pred hhhhhcccchhhHHHHHHHHHh----cCCeEEEEcCccccccccccccCCCchhhHHHHHHHHhhhcccccCCeEEEEec
Q 035561 525 EAGLWVGQSASNVRELFQTARD----LAPVIIFVEDFDLFAGVRGQFIHTKQQDHESFINQLLVELDGFEKQDGVVLMAT 600 (979)
Q Consensus 525 ~~~~~vG~~~~~Ir~lF~~A~~----~aP~ILfIDEIDaL~~~r~~~~~~~~~~~~~iln~LL~~LDg~~~~~~ViVIAT 600 (979)
+ ...+...+|++.+.+.. ....|++||++|.+ .....|.||+.|+. ..+++++|.+
T Consensus 70 --~--~~i~v~~ir~~~~~~~~~p~~~~~kv~iI~~ad~m--------------~~~a~naLLK~LEe--pp~~t~~il~ 129 (313)
T PRK05564 70 --K--KSIGVDDIRNIIEEVNKKPYEGDKKVIIIYNSEKM--------------TEQAQNAFLKTIEE--PPKGVFIILL 129 (313)
T ss_pred --C--CCCCHHHHHHHHHHHhcCcccCCceEEEEechhhc--------------CHHHHHHHHHHhcC--CCCCeEEEEE
Confidence 1 11223457776665432 23479999999877 34456788888885 3345555556
Q ss_pred ccchhhchhhhhcCCceeeEeccCCCCHHHHHHHHHHHHHhccchhhhhhhhHHHHHHHcCCC
Q 035561 601 TRNIKQIDEALQRPGRMDRIFNLQKPTQSEREKILRIAAQETMDEELIDLVDWRKVAEKTALL 663 (979)
Q Consensus 601 TN~pe~LDpALlRpgRFd~~I~~~~Pd~eeR~~IL~~~l~~~~~~~l~~dvdL~~LA~~T~Gf 663 (979)
|++++.+.|.++++ . ..+.|++|+.++....++...... +...+..++..+.|-
T Consensus 130 ~~~~~~ll~TI~SR--c-~~~~~~~~~~~~~~~~l~~~~~~~------~~~~~~~l~~~~~g~ 183 (313)
T PRK05564 130 CENLEQILDTIKSR--C-QIYKLNRLSKEEIEKFISYKYNDI------KEEEKKSAIAFSDGI 183 (313)
T ss_pred eCChHhCcHHHHhh--c-eeeeCCCcCHHHHHHHHHHHhcCC------CHHHHHHHHHHcCCC
Confidence 67889999999994 4 689999999999888887654321 122345566655553
No 160
>TIGR02442 Cob-chelat-sub cobaltochelatase subunit. A number of genomes (actinobacteria, cyanobacteria, betaproteobacteria and pseudomonads) which apparently biosynthesize B12, encode a cobN gene but are demonstrably lacking cobS and cobT. These genomes do, however contain a homolog (modelled here) of the magnesium chelatase subunits BchI/BchD family. Aside from the cyanobacteria (which have a separate magnesium chelatase trimer), these species do not make chlorins, so do not have any use for a magnesium chelatase. Furthermore, in nearly all cases the members of this family are proximal to either CobN itself or other genes involved in cobalt transport or B12 biosynthesis.
Probab=99.08 E-value=1.2e-09 Score=133.03 Aligned_cols=156 Identities=24% Similarity=0.355 Sum_probs=103.4
Q ss_pred CCCcccCcHHHHHHHHHHHHhhcChhHHHhcCCCCCceeEecCCCCCChHHHHHHHHHHc--------------------
Q 035561 453 PLKDFASVESMREEINEVVAFLQNPSAFQEMGARAPRGVLIVGERGTGKTSLALAIAAEA-------------------- 512 (979)
Q Consensus 453 ~f~DIvGleevke~L~eiV~~L~~p~~f~~lG~~~P~gVLL~GPPGTGKTtLArAlA~el-------------------- 512 (979)
.|.+|+|++.++..|.-.. .+| ...||||+|+||||||++|+++++.+
T Consensus 2 pf~~ivGq~~~~~al~~~a---v~~---------~~g~vli~G~~GtgKs~lar~l~~~lp~~~~~~~~~~~c~p~~~~~ 69 (633)
T TIGR02442 2 PFTAIVGQEDLKLALLLNA---VDP---------RIGGVLIRGEKGTAKSTAARGLAALLPPIDVVAGCPFSCDPDDPEE 69 (633)
T ss_pred CcchhcChHHHHHHHHHHh---hCC---------CCCeEEEEcCCCCcHHHHHHHHHHhCCCceeccCCcCCCCCCCccc
Confidence 5889999999997775221 111 12479999999999999999999887
Q ss_pred ---------------CCCEEEeechhhhhhhhcccc--hhhH--------HHHHHHHHhcCCeEEEEcCccccccccccc
Q 035561 513 ---------------RVPVVNVEAQELEAGLWVGQS--ASNV--------RELFQTARDLAPVIIFVEDFDLFAGVRGQF 567 (979)
Q Consensus 513 ---------------g~~~i~Is~sdL~~~~~vG~~--~~~I--------r~lF~~A~~~aP~ILfIDEIDaL~~~r~~~ 567 (979)
..||+.+.++... ....|.. ...+ ..++..| ..+||||||++.+.
T Consensus 70 ~~~~~~~~~~~~~~~~~pfv~~p~~~t~-~~l~G~~d~~~~l~~g~~~~~~G~L~~A---~~GiL~lDEi~~l~------ 139 (633)
T TIGR02442 70 WCEECRRKYRPSEQRPVPFVNLPLGATE-DRVVGSLDIERALREGEKAFQPGLLAEA---HRGILYIDEVNLLD------ 139 (633)
T ss_pred cChhhhhcccccccCCCCeeeCCCCCcH-HHcCCcccHHHHhhcCCeeecCcceeec---CCCeEEeChhhhCC------
Confidence 3567766554322 2222211 0000 0111111 34799999999872
Q ss_pred cCCCchhhHHHHHHHHhhhcc----c-------ccCCeEEEEecccch-hhchhhhhcCCceeeEeccCCCC-HHHHHHH
Q 035561 568 IHTKQQDHESFINQLLVELDG----F-------EKQDGVVLMATTRNI-KQIDEALQRPGRMDRIFNLQKPT-QSEREKI 634 (979)
Q Consensus 568 ~~~~~~~~~~iln~LL~~LDg----~-------~~~~~ViVIATTN~p-e~LDpALlRpgRFd~~I~~~~Pd-~eeR~~I 634 (979)
..+.+.|+..|+. + .....+.+|+|+|.. ..++++|+. ||+..|.++.|. .+++.+|
T Consensus 140 --------~~~q~~Ll~~le~g~~~v~r~g~~~~~~~~~~lIat~np~eg~l~~~L~d--R~~l~i~v~~~~~~~~~~~i 209 (633)
T TIGR02442 140 --------DHLVDVLLDAAAMGVNRVEREGLSVSHPARFVLIGTMNPEEGDLRPQLLD--RFGLCVDVAAPRDPEERVEI 209 (633)
T ss_pred --------HHHHHHHHHHHhcCCEEEEECCceeeecCCeEEEEecCCCCCCCCHHHHh--hcceEEEccCCCchHHHHHH
Confidence 3455666666642 1 112358899998864 368899999 999999998874 6788999
Q ss_pred HHHHHH
Q 035561 635 LRIAAQ 640 (979)
Q Consensus 635 L~~~l~ 640 (979)
++....
T Consensus 210 l~~~~~ 215 (633)
T TIGR02442 210 IRRRLA 215 (633)
T ss_pred HHHHHh
Confidence 986554
No 161
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=99.07 E-value=1.3e-09 Score=132.57 Aligned_cols=169 Identities=19% Similarity=0.290 Sum_probs=125.0
Q ss_pred CCCCCCcccCcHHHHHHHHHHHHhhcChhHHHhcCCCCCceeEecCCCCCChHHHHHHHHHHc----------CCCEEEe
Q 035561 450 PPIPLKDFASVESMREEINEVVAFLQNPSAFQEMGARAPRGVLIVGERGTGKTSLALAIAAEA----------RVPVVNV 519 (979)
Q Consensus 450 ~~~~f~DIvGleevke~L~eiV~~L~~p~~f~~lG~~~P~gVLL~GPPGTGKTtLArAlA~el----------g~~~i~I 519 (979)
..-.++-++|-++.++.+-+++. -+...+-+|.|+||+|||.++.-+|... +..++++
T Consensus 165 r~gklDPvIGRd~EI~r~iqIL~------------RR~KNNPvLiGEpGVGKTAIvEGLA~rIv~g~VP~~L~~~~i~sL 232 (786)
T COG0542 165 REGKLDPVIGRDEEIRRTIQILS------------RRTKNNPVLVGEPGVGKTAIVEGLAQRIVNGDVPESLKDKRIYSL 232 (786)
T ss_pred hcCCCCCCcChHHHHHHHHHHHh------------ccCCCCCeEecCCCCCHHHHHHHHHHHHhcCCCCHHHcCCEEEEe
Confidence 34568899999966655554442 2234567899999999999999999864 5678999
Q ss_pred echhhhhh-hhcccchhhHHHHHHHHHhcCCeEEEEcCccccccccccccCCCchhhHHHHHHHHhhhcccccCCeEEEE
Q 035561 520 EAQELEAG-LWVGQSASNVRELFQTARDLAPVIIFVEDFDLFAGVRGQFIHTKQQDHESFINQLLVELDGFEKQDGVVLM 598 (979)
Q Consensus 520 s~sdL~~~-~~vG~~~~~Ir~lF~~A~~~aP~ILfIDEIDaL~~~r~~~~~~~~~~~~~iln~LL~~LDg~~~~~~ViVI 598 (979)
+.+.++++ +|-|+.+.+++.+.+...+..+.||||||||.+.+..++.+ + ..+...++.-.| ...+-.+|.
T Consensus 233 D~g~LvAGakyRGeFEeRlk~vl~ev~~~~~vILFIDEiHtiVGAG~~~G-~-a~DAaNiLKPaL------ARGeL~~IG 304 (786)
T COG0542 233 DLGSLVAGAKYRGEFEERLKAVLKEVEKSKNVILFIDEIHTIVGAGATEG-G-AMDAANLLKPAL------ARGELRCIG 304 (786)
T ss_pred cHHHHhccccccCcHHHHHHHHHHHHhcCCCeEEEEechhhhcCCCcccc-c-ccchhhhhHHHH------hcCCeEEEE
Confidence 99988754 69999999999999999988899999999999976543211 1 233444444444 233334555
Q ss_pred ecccchh----hchhhhhcCCceeeEeccCCCCHHHHHHHHHHHHHh
Q 035561 599 ATTRNIK----QIDEALQRPGRMDRIFNLQKPTQSEREKILRIAAQE 641 (979)
Q Consensus 599 ATTN~pe----~LDpALlRpgRFd~~I~~~~Pd~eeR~~IL~~~l~~ 641 (979)
|||-..- .-|+||-| || ..|.+..|+.++-..||+..-.+
T Consensus 305 ATT~~EYRk~iEKD~AL~R--RF-Q~V~V~EPs~e~ti~ILrGlk~~ 348 (786)
T COG0542 305 ATTLDEYRKYIEKDAALER--RF-QKVLVDEPSVEDTIAILRGLKER 348 (786)
T ss_pred eccHHHHHHHhhhchHHHh--cC-ceeeCCCCCHHHHHHHHHHHHHH
Confidence 5554422 34999999 99 58899999999999999976543
No 162
>KOG1969 consensus DNA replication checkpoint protein CHL12/CTF18 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=99.06 E-value=2.4e-09 Score=127.11 Aligned_cols=212 Identities=20% Similarity=0.223 Sum_probs=137.3
Q ss_pred hhcccCCCCCCCCcccCcHHHHHHHHHHHHhhcChhHHH----hc-------------------CCCCCceeEecCCCCC
Q 035561 443 RMKRVKNPPIPLKDFASVESMREEINEVVAFLQNPSAFQ----EM-------------------GARAPRGVLIVGERGT 499 (979)
Q Consensus 443 ~l~~v~~~~~~f~DIvGleevke~L~eiV~~L~~p~~f~----~l-------------------G~~~P~gVLL~GPPGT 499 (979)
.++..++.+..|.|+.|.+.+-..+...+... .+..|. ++ +-+..+-+||+||||.
T Consensus 259 kLWVdky~Pk~FtdLLsDe~tNR~~L~WLK~W-D~~VFg~~vsrl~~s~~~~~ke~~~~~~~~s~RP~kKilLL~GppGl 337 (877)
T KOG1969|consen 259 KLWVDKYRPKKFTDLLSDEKTNRRMLGWLKQW-DPCVFGQKVSRLLASKGPTEKEVLDMELDPSKRPPKKILLLCGPPGL 337 (877)
T ss_pred ceeecccChhHHHHHhcchhHHHHHHHHHHhh-cHHhhcchHhhhccccccchhhhhhcccCccCCCccceEEeecCCCC
Confidence 47777889999999999998776655433221 111111 11 1122356889999999
Q ss_pred ChHHHHHHHHHHcCCCEEEeechhhhhhhhcccchhhHHHHHHHHH--------hcCCeEEEEcCccccccccccccCCC
Q 035561 500 GKTSLALAIAAEARVPVVNVEAQELEAGLWVGQSASNVRELFQTAR--------DLAPVIIFVEDFDLFAGVRGQFIHTK 571 (979)
Q Consensus 500 GKTtLArAlA~elg~~~i~Is~sdL~~~~~vG~~~~~Ir~lF~~A~--------~~aP~ILfIDEIDaL~~~r~~~~~~~ 571 (979)
||||||+.+|+++|..+++||+||= + +...++.....|- ...|..|+|||||.-
T Consensus 338 GKTTLAHViAkqaGYsVvEINASDe---R----t~~~v~~kI~~avq~~s~l~adsrP~CLViDEIDGa----------- 399 (877)
T KOG1969|consen 338 GKTTLAHVIAKQAGYSVVEINASDE---R----TAPMVKEKIENAVQNHSVLDADSRPVCLVIDEIDGA----------- 399 (877)
T ss_pred ChhHHHHHHHHhcCceEEEeccccc---c----cHHHHHHHHHHHHhhccccccCCCcceEEEecccCC-----------
Confidence 9999999999999999999999983 2 2233343333332 246889999999821
Q ss_pred chhhHHHHHHHHhhhc-------ccccC------------CeEEEEecccchhhchhhhhcCCceeeEeccCCCCHHHHH
Q 035561 572 QQDHESFINQLLVELD-------GFEKQ------------DGVVLMATTRNIKQIDEALQRPGRMDRIFNLQKPTQSERE 632 (979)
Q Consensus 572 ~~~~~~iln~LL~~LD-------g~~~~------------~~ViVIATTN~pe~LDpALlRpgRFd~~I~~~~Pd~eeR~ 632 (979)
....++.++..+. |-... -...||+.||+.- -|||+-=--|...+.|.+|......
T Consensus 400 ---~~~~Vdvilslv~a~~k~~~Gkq~~~~~~rkkkr~~~L~RPIICICNdLY--aPaLR~Lr~~A~ii~f~~p~~s~Lv 474 (877)
T KOG1969|consen 400 ---PRAAVDVILSLVKATNKQATGKQAKKDKKRKKKRSKLLTRPIICICNDLY--APALRPLRPFAEIIAFVPPSQSRLV 474 (877)
T ss_pred ---cHHHHHHHHHHHHhhcchhhcCcccchhhhhhhccccccCCEEEEecCcc--chhhhhcccceEEEEecCCChhHHH
Confidence 1334445544443 11110 1267899999743 3666332247789999999998888
Q ss_pred HHHHHHHHhccchhhhhhhhHHHHHHHcCCCCHHHHHHHHHHHhhhhhccCC
Q 035561 633 KILRIAAQETMDEELIDLVDWRKVAEKTALLRPIELKLVPVALEGSAFRSKF 684 (979)
Q Consensus 633 ~IL~~~l~~~~~~~l~~dvdL~~LA~~T~GfsgaDL~~Lv~aa~~aa~r~~~ 684 (979)
+=|+..+.+.. --.+.-.+..|++.|++ ||..-++.++..+.+...
T Consensus 475 ~RL~~IC~rE~--mr~d~~aL~~L~el~~~----DIRsCINtLQfLa~~~~r 520 (877)
T KOG1969|consen 475 ERLNEICHREN--MRADSKALNALCELTQN----DIRSCINTLQFLASNVDR 520 (877)
T ss_pred HHHHHHHhhhc--CCCCHHHHHHHHHHhcc----hHHHHHHHHHHHHHhccc
Confidence 77777766532 12333456666666665 888888888877665443
No 163
>TIGR00368 Mg chelatase-related protein. The N-terminal end matches very strongly a pfam Mg_chelatase domain.
Probab=99.02 E-value=2.6e-09 Score=126.40 Aligned_cols=145 Identities=17% Similarity=0.245 Sum_probs=91.0
Q ss_pred CCCCcccCcHHHHHHHHHHHHhhcChhHHHhcCCCCCceeEecCCCCCChHHHHHHHHHHc-------------------
Q 035561 452 IPLKDFASVESMREEINEVVAFLQNPSAFQEMGARAPRGVLIVGERGTGKTSLALAIAAEA------------------- 512 (979)
Q Consensus 452 ~~f~DIvGleevke~L~eiV~~L~~p~~f~~lG~~~P~gVLL~GPPGTGKTtLArAlA~el------------------- 512 (979)
..|+|+.|+..+++.+.-. +....+++|.||||||||++++++++.+
T Consensus 189 ~d~~dv~Gq~~~~~al~~a--------------a~~g~~vlliG~pGsGKTtlar~l~~llp~~~~~~~le~~~i~s~~g 254 (499)
T TIGR00368 189 LDLKDIKGQQHAKRALEIA--------------AAGGHNLLLFGPPGSGKTMLASRLQGILPPLTNEEAIETARIWSLVG 254 (499)
T ss_pred CCHHHhcCcHHHHhhhhhh--------------ccCCCEEEEEecCCCCHHHHHHHHhcccCCCCCcEEEeccccccchh
Confidence 4789999999887766521 2233579999999999999999998743
Q ss_pred ---------CCCEEEeechhhhhhhhcccchhhHHHHHHHHHhcCCeEEEEcCccccccccccccCCCchhhHHHHHHHH
Q 035561 513 ---------RVPVVNVEAQELEAGLWVGQSASNVRELFQTARDLAPVIIFVEDFDLFAGVRGQFIHTKQQDHESFINQLL 583 (979)
Q Consensus 513 ---------g~~~i~Is~sdL~~~~~vG~~~~~Ir~lF~~A~~~aP~ILfIDEIDaL~~~r~~~~~~~~~~~~~iln~LL 583 (979)
..||..+.++..... ..|.+...-...+..| ..++|||||++.+. ..+++.|+
T Consensus 255 ~~~~~~~~~~~Pf~~p~~s~s~~~-~~ggg~~~~pG~i~lA---~~GvLfLDEi~e~~--------------~~~~~~L~ 316 (499)
T TIGR00368 255 KLIDRKQIKQRPFRSPHHSASKPA-LVGGGPIPLPGEISLA---HNGVLFLDELPEFK--------------RSVLDALR 316 (499)
T ss_pred hhccccccccCCccccccccchhh-hhCCccccchhhhhcc---CCCeEecCChhhCC--------------HHHHHHHH
Confidence 123333333321111 1221111111223333 34899999999772 23444555
Q ss_pred hhhcccc-----------cCCeEEEEecccch-----h------------------hchhhhhcCCceeeEeccCCCCHH
Q 035561 584 VELDGFE-----------KQDGVVLMATTRNI-----K------------------QIDEALQRPGRMDRIFNLQKPTQS 629 (979)
Q Consensus 584 ~~LDg~~-----------~~~~ViVIATTN~p-----e------------------~LDpALlRpgRFd~~I~~~~Pd~e 629 (979)
..|+.-. ...++.+|+|+|.. . .|...|+. |||..+.++.++.+
T Consensus 317 ~~LE~~~v~i~r~g~~~~~pa~frlIaa~Npcpcg~~~~~~~~c~c~~~~~~~y~~~is~pllD--R~dl~~~~~~~~~~ 394 (499)
T TIGR00368 317 EPIEDGSISISRASAKIFYPARFQLVAAMNPCPCGHYGGKNTHCRCSPQQISRYWNKLSGPFLD--RIDLSVEVPLLPPE 394 (499)
T ss_pred HHHHcCcEEEEecCcceeccCCeEEEEecCCcccCcCCCCcccccCCHHHHHHHhhhccHhHHh--hCCEEEEEcCCCHH
Confidence 5554311 12357888998862 1 47888899 99999999988765
Q ss_pred H
Q 035561 630 E 630 (979)
Q Consensus 630 e 630 (979)
+
T Consensus 395 ~ 395 (499)
T TIGR00368 395 K 395 (499)
T ss_pred H
Confidence 3
No 164
>PF07724 AAA_2: AAA domain (Cdc48 subfamily); InterPro: IPR013093 ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of ATPase AAA-2 domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. Some of these ATPases function as a chaperone subunit of a proteasome-like degradation complex. This ATPase family includes some proteins not detected by IPR003959 from INTERPRO.; GO: 0005524 ATP binding; PDB: 1R6B_X 1KSF_X 3PXI_C 1KYI_T 1G3I_S 1OFH_B 1OFI_A 1G41_A 1IM2_A 1HQY_E ....
Probab=99.02 E-value=6.1e-10 Score=114.52 Aligned_cols=111 Identities=22% Similarity=0.288 Sum_probs=75.4
Q ss_pred ceeEecCCCCCChHHHHHHHHHHcCC----CEEEeechhhhhhhhcccchhhHHHHHHHH----HhcCCeEEEEcCcccc
Q 035561 489 RGVLIVGERGTGKTSLALAIAAEARV----PVVNVEAQELEAGLWVGQSASNVRELFQTA----RDLAPVIIFVEDFDLF 560 (979)
Q Consensus 489 ~gVLL~GPPGTGKTtLArAlA~elg~----~~i~Is~sdL~~~~~vG~~~~~Ir~lF~~A----~~~aP~ILfIDEIDaL 560 (979)
.++||+||+|||||.+|+++|..+.. +++.++++++.. .+.....+..+...+ ......||||||||..
T Consensus 4 ~~~ll~GpsGvGKT~la~~la~~l~~~~~~~~~~~d~s~~~~---~~~~~~~~~~l~~~~~~~v~~~~~gVVllDEidKa 80 (171)
T PF07724_consen 4 SNFLLAGPSGVGKTELAKALAELLFVGSERPLIRIDMSEYSE---GDDVESSVSKLLGSPPGYVGAEEGGVVLLDEIDKA 80 (171)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHHHT-SSCCEEEEEEGGGHCS---HHHCSCHCHHHHHHTTCHHHHHHHTEEEEETGGGC
T ss_pred EEEEEECCCCCCHHHHHHHHHHHhccCCccchHHHhhhcccc---cchHHhhhhhhhhcccceeeccchhhhhhHHHhhc
Confidence 46899999999999999999999996 999999999863 111222222222222 1112259999999998
Q ss_pred ccccccccCCCchhhHHHHHHHHhhhccc---------ccCCeEEEEecccchh
Q 035561 561 AGVRGQFIHTKQQDHESFINQLLVELDGF---------EKQDGVVLMATTRNIK 605 (979)
Q Consensus 561 ~~~r~~~~~~~~~~~~~iln~LL~~LDg~---------~~~~~ViVIATTN~pe 605 (979)
.+.. +.+.+-....+.+.||+.||+- -+..++++|+|+|--.
T Consensus 81 ~~~~---~~~~~v~~~~V~~~LL~~le~g~~~d~~g~~vd~~n~ifI~Tsn~~~ 131 (171)
T PF07724_consen 81 HPSN---SGGADVSGEGVQNSLLQLLEGGTLTDSYGRTVDTSNIIFIMTSNFGA 131 (171)
T ss_dssp SHTT---TTCSHHHHHHHHHHHHHHHHHSEEEETTCCEEEGTTEEEEEEESSST
T ss_pred cccc---cccchhhHHHHHHHHHHHhcccceecccceEEEeCCceEEEeccccc
Confidence 7641 1333444457788888888752 1124689999999844
No 165
>PRK07399 DNA polymerase III subunit delta'; Validated
Probab=99.02 E-value=6.1e-09 Score=116.85 Aligned_cols=181 Identities=15% Similarity=0.191 Sum_probs=121.4
Q ss_pred CCCcccCcHHHHHHHHHHHHhhcChhHHHhcCCCCCceeEecCCCCCChHHHHHHHHHHcCCC-----------------
Q 035561 453 PLKDFASVESMREEINEVVAFLQNPSAFQEMGARAPRGVLIVGERGTGKTSLALAIAAEARVP----------------- 515 (979)
Q Consensus 453 ~f~DIvGleevke~L~eiV~~L~~p~~f~~lG~~~P~gVLL~GPPGTGKTtLArAlA~elg~~----------------- 515 (979)
.|++|+|++++++.|...+.. .+.|.++||+||+|+||+++|.++|+.+-..
T Consensus 2 ~f~~iiGq~~~~~~L~~~i~~-----------~rl~ha~Lf~G~~G~Gk~~~A~~~a~~llc~~~c~~c~~~~~~~~~hP 70 (314)
T PRK07399 2 LFANLIGQPLAIELLTAAIKQ-----------NRIAPAYLFAGPEGVGRKLAALCFIEGLLSQGSPSKNIRRRLEEGNHP 70 (314)
T ss_pred cHHHhCCHHHHHHHHHHHHHh-----------CCCCceEEEECCCCCCHHHHHHHHHHHHcCCCCCCCcHhcccccCCCC
Confidence 589999999999999876632 2446689999999999999999999986321
Q ss_pred -EEEeechhhhhhh--------hcc--------cchhhHHHHHHHHHh----cCCeEEEEcCccccccccccccCCCchh
Q 035561 516 -VVNVEAQELEAGL--------WVG--------QSASNVRELFQTARD----LAPVIIFVEDFDLFAGVRGQFIHTKQQD 574 (979)
Q Consensus 516 -~i~Is~sdL~~~~--------~vG--------~~~~~Ir~lF~~A~~----~aP~ILfIDEIDaL~~~r~~~~~~~~~~ 574 (979)
++.+.+.....+. ..| .....+|++.+.+.. ....|++||++|.+
T Consensus 71 Dl~~i~p~~~~~g~~~~~~~~~~~~~~~~~~~~I~id~ir~i~~~l~~~p~~~~~kVvII~~ae~m-------------- 136 (314)
T PRK07399 71 DLLWVEPTYQHQGKLITASEAEEAGLKRKAPPQIRLEQIREIKRFLSRPPLEAPRKVVVIEDAETM-------------- 136 (314)
T ss_pred CEEEEeccccccccccchhhhhhccccccccccCcHHHHHHHHHHHccCcccCCceEEEEEchhhc--------------
Confidence 1111111000000 000 112356666555543 23589999999977
Q ss_pred hHHHHHHHHhhhcccccCCeEEEEecccchhhchhhhhcCCceeeEeccCCCCHHHHHHHHHHHHHhccchhhhhhhhHH
Q 035561 575 HESFINQLLVELDGFEKQDGVVLMATTRNIKQIDEALQRPGRMDRIFNLQKPTQSEREKILRIAAQETMDEELIDLVDWR 654 (979)
Q Consensus 575 ~~~iln~LL~~LDg~~~~~~ViVIATTN~pe~LDpALlRpgRFd~~I~~~~Pd~eeR~~IL~~~l~~~~~~~l~~dvdL~ 654 (979)
.....|.||+.|+... . .++|.+|++++.|.|.+++ |. ..+.|++|+.++..++|+...... ..+.++.
T Consensus 137 ~~~aaNaLLK~LEEPp--~-~~fILi~~~~~~Ll~TI~S--Rc-q~i~f~~l~~~~~~~~L~~~~~~~-----~~~~~~~ 205 (314)
T PRK07399 137 NEAAANALLKTLEEPG--N-GTLILIAPSPESLLPTIVS--RC-QIIPFYRLSDEQLEQVLKRLGDEE-----ILNINFP 205 (314)
T ss_pred CHHHHHHHHHHHhCCC--C-CeEEEEECChHhCcHHHHh--hc-eEEecCCCCHHHHHHHHHHhhccc-----cchhHHH
Confidence 3456788999988754 2 3455567789999999999 44 789999999999999999764321 1112356
Q ss_pred HHHHHcCCCCHHHHH
Q 035561 655 KVAEKTALLRPIELK 669 (979)
Q Consensus 655 ~LA~~T~GfsgaDL~ 669 (979)
.++....|-.+.-+.
T Consensus 206 ~l~~~a~Gs~~~al~ 220 (314)
T PRK07399 206 ELLALAQGSPGAAIA 220 (314)
T ss_pred HHHHHcCCCHHHHHH
Confidence 777777774443333
No 166
>COG1224 TIP49 DNA helicase TIP49, TBP-interacting protein [Transcription]
Probab=99.02 E-value=9.7e-09 Score=114.10 Aligned_cols=68 Identities=38% Similarity=0.561 Sum_probs=56.3
Q ss_pred CCCCCcccCcHHHHHHHHHHHHhhcChhHHHhcCCCCCceeEecCCCCCChHHHHHHHHHHcC--CCEEEeechhhh
Q 035561 451 PIPLKDFASVESMREEINEVVAFLQNPSAFQEMGARAPRGVLIVGERGTGKTSLALAIAAEAR--VPVVNVEAQELE 525 (979)
Q Consensus 451 ~~~f~DIvGleevke~L~eiV~~L~~p~~f~~lG~~~P~gVLL~GPPGTGKTtLArAlA~elg--~~~i~Is~sdL~ 525 (979)
...-+.++|+.++++.---++...+. |--..++||+.||||||||.||-++|+++| +||+.+++|++.
T Consensus 35 k~~~dG~VGQ~~AReAaGvIv~mik~-------gk~aGrgiLi~GppgTGKTAlA~gIa~eLG~dvPF~~isgsEiY 104 (450)
T COG1224 35 KFIGDGLVGQEEAREAAGVIVKMIKQ-------GKMAGRGILIVGPPGTGKTALAMGIARELGEDVPFVAISGSEIY 104 (450)
T ss_pred eEcCCcccchHHHHHhhhHHHHHHHh-------CcccccEEEEECCCCCcHHHHHHHHHHHhCCCCCceeeccceee
Confidence 34457899999999987766665544 334467999999999999999999999996 899999999885
No 167
>COG0593 DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair]
Probab=99.01 E-value=1e-08 Score=117.74 Aligned_cols=197 Identities=24% Similarity=0.321 Sum_probs=124.7
Q ss_pred CCCCCCCCcccCcHHHHHHHHHHHHhhcChhHHHhcCCCCCceeEecCCCCCChHHHHHHHHHHc-----CCCEEEeech
Q 035561 448 KNPPIPLKDFASVESMREEINEVVAFLQNPSAFQEMGARAPRGVLIVGERGTGKTSLALAIAAEA-----RVPVVNVEAQ 522 (979)
Q Consensus 448 ~~~~~~f~DIvGleevke~L~eiV~~L~~p~~f~~lG~~~P~gVLL~GPPGTGKTtLArAlA~el-----g~~~i~Is~s 522 (979)
-.+..+|++++.-+.-.....-....-.+|. . .-.-++||||.|+|||+|++|+++++ +..+++++..
T Consensus 80 l~~~ytFdnFv~g~~N~~A~aa~~~va~~~g------~-~~nplfi~G~~GlGKTHLl~Aign~~~~~~~~a~v~y~~se 152 (408)
T COG0593 80 LNPKYTFDNFVVGPSNRLAYAAAKAVAENPG------G-AYNPLFIYGGVGLGKTHLLQAIGNEALANGPNARVVYLTSE 152 (408)
T ss_pred CCCCCchhheeeCCchHHHHHHHHHHHhccC------C-cCCcEEEECCCCCCHHHHHHHHHHHHHhhCCCceEEeccHH
Confidence 3567889998765554444333332222221 1 22349999999999999999999987 3458888887
Q ss_pred hhhhhhhcccchhhHHHHHHHHHhcCCeEEEEcCccccccccccccCCCchhhHHHHHHHHhhhcccccCCeEEEEeccc
Q 035561 523 ELEAGLWVGQSASNVRELFQTARDLAPVIIFVEDFDLFAGVRGQFIHTKQQDHESFINQLLVELDGFEKQDGVVLMATTR 602 (979)
Q Consensus 523 dL~~~~~vG~~~~~Ir~lF~~A~~~aP~ILfIDEIDaL~~~r~~~~~~~~~~~~~iln~LL~~LDg~~~~~~ViVIATTN 602 (979)
++. ..++......--+-|+.-. +-.+|+||+++.+.++.. .+.+.-.++|.+. ..++.+|+.+..
T Consensus 153 ~f~-~~~v~a~~~~~~~~Fk~~y--~~dlllIDDiq~l~gk~~-----~qeefFh~FN~l~-------~~~kqIvltsdr 217 (408)
T COG0593 153 DFT-NDFVKALRDNEMEKFKEKY--SLDLLLIDDIQFLAGKER-----TQEEFFHTFNALL-------ENGKQIVLTSDR 217 (408)
T ss_pred HHH-HHHHHHHHhhhHHHHHHhh--ccCeeeechHhHhcCChh-----HHHHHHHHHHHHH-------hcCCEEEEEcCC
Confidence 775 3333332222222344333 346999999999965422 1223334444443 334467777766
Q ss_pred chhhc---hhhhhcCCcee--eEeccCCCCHHHHHHHHHHHHHhccchhhhhhhhHHHHHHHcCCCCHHHHHHH
Q 035561 603 NIKQI---DEALQRPGRMD--RIFNLQKPTQSEREKILRIAAQETMDEELIDLVDWRKVAEKTALLRPIELKLV 671 (979)
Q Consensus 603 ~pe~L---DpALlRpgRFd--~~I~~~~Pd~eeR~~IL~~~l~~~~~~~l~~dvdL~~LA~~T~GfsgaDL~~L 671 (979)
.|..+ .|.|++ ||. ..+.+.+||.+.|..||+....... ...++.-+..+|.+... +..+|...
T Consensus 218 ~P~~l~~~~~rL~S--R~~~Gl~~~I~~Pd~e~r~aiL~kka~~~~--~~i~~ev~~~la~~~~~-nvReLega 286 (408)
T COG0593 218 PPKELNGLEDRLRS--RLEWGLVVEIEPPDDETRLAILRKKAEDRG--IEIPDEVLEFLAKRLDR-NVRELEGA 286 (408)
T ss_pred CchhhccccHHHHH--HHhceeEEeeCCCCHHHHHHHHHHHHHhcC--CCCCHHHHHHHHHHhhc-cHHHHHHH
Confidence 77765 588988 877 4789999999999999999776543 23444556777777654 33444433
No 168
>PRK04132 replication factor C small subunit; Provisional
Probab=99.01 E-value=5e-09 Score=129.71 Aligned_cols=169 Identities=18% Similarity=0.197 Sum_probs=120.7
Q ss_pred eeEecC--CCCCChHHHHHHHHHHc-----CCCEEEeechhhhhhhhcccchhhHHHHHHHHHhcC------CeEEEEcC
Q 035561 490 GVLIVG--ERGTGKTSLALAIAAEA-----RVPVVNVEAQELEAGLWVGQSASNVRELFQTARDLA------PVIIFVED 556 (979)
Q Consensus 490 gVLL~G--PPGTGKTtLArAlA~el-----g~~~i~Is~sdL~~~~~vG~~~~~Ir~lF~~A~~~a------P~ILfIDE 556 (979)
+-+..| |++.||||+|+++|+++ +.+++++|+++.. +...+|++...+.... ..|++|||
T Consensus 566 ~~~~~G~lPh~lGKTT~A~ala~~l~g~~~~~~~lElNASd~r-------gid~IR~iIk~~a~~~~~~~~~~KVvIIDE 638 (846)
T PRK04132 566 HNFIGGNLPTVLHNTTAALALARELFGENWRHNFLELNASDER-------GINVIREKVKEFARTKPIGGASFKIIFLDE 638 (846)
T ss_pred hhhhcCCCCCcccHHHHHHHHHHhhhcccccCeEEEEeCCCcc-------cHHHHHHHHHHHHhcCCcCCCCCEEEEEEC
Confidence 346668 99999999999999998 5689999998842 1236677666554332 26999999
Q ss_pred ccccccccccccCCCchhhHHHHHHHHhhhcccccCCeEEEEecccchhhchhhhhcCCceeeEeccCCCCHHHHHHHHH
Q 035561 557 FDLFAGVRGQFIHTKQQDHESFINQLLVELDGFEKQDGVVLMATTRNIKQIDEALQRPGRMDRIFNLQKPTQSEREKILR 636 (979)
Q Consensus 557 IDaL~~~r~~~~~~~~~~~~~iln~LL~~LDg~~~~~~ViVIATTN~pe~LDpALlRpgRFd~~I~~~~Pd~eeR~~IL~ 636 (979)
+|.+. ....+.|+..|+... ..+.+|.+||+++.+.++|++ |+ ..+.|++|+.++....|+
T Consensus 639 aD~Lt--------------~~AQnALLk~lEep~--~~~~FILi~N~~~kIi~tIrS--RC-~~i~F~~ls~~~i~~~L~ 699 (846)
T PRK04132 639 ADALT--------------QDAQQALRRTMEMFS--SNVRFILSCNYSSKIIEPIQS--RC-AIFRFRPLRDEDIAKRLR 699 (846)
T ss_pred cccCC--------------HHHHHHHHHHhhCCC--CCeEEEEEeCChhhCchHHhh--hc-eEEeCCCCCHHHHHHHHH
Confidence 99883 234567787777543 457788889999999999999 54 789999999999999999
Q ss_pred HHHHhccchhhhhhhhHHHHHHHcCCCCHHHHHHHHHHHhhhhhccCCCChHHH
Q 035561 637 IAAQETMDEELIDLVDWRKVAEKTALLRPIELKLVPVALEGSAFRSKFLDTDEL 690 (979)
Q Consensus 637 ~~l~~~~~~~l~~dvdL~~LA~~T~GfsgaDL~~Lv~aa~~aa~r~~~~s~~ei 690 (979)
..+.+.. ...++..+..++..+.| |+....+.++.++.....++.+.+
T Consensus 700 ~I~~~Eg--i~i~~e~L~~Ia~~s~G----DlR~AIn~Lq~~~~~~~~It~~~V 747 (846)
T PRK04132 700 YIAENEG--LELTEEGLQAILYIAEG----DMRRAINILQAAAALDDKITDENV 747 (846)
T ss_pred HHHHhcC--CCCCHHHHHHHHHHcCC----CHHHHHHHHHHHHHhcCCCCHHHH
Confidence 8877532 12345578889988888 554444444443332233444443
No 169
>smart00350 MCM minichromosome maintenance proteins.
Probab=99.00 E-value=5.3e-09 Score=124.49 Aligned_cols=168 Identities=14% Similarity=0.154 Sum_probs=98.4
Q ss_pred CcccCcHHHHHHHHHHHHhhcChhHHHhcCCCCCceeEecCCCCCChHHHHHHHHHHcCCCEEEe----echhhhhhhhc
Q 035561 455 KDFASVESMREEINEVVAFLQNPSAFQEMGARAPRGVLIVGERGTGKTSLALAIAAEARVPVVNV----EAQELEAGLWV 530 (979)
Q Consensus 455 ~DIvGleevke~L~eiV~~L~~p~~f~~lG~~~P~gVLL~GPPGTGKTtLArAlA~elg~~~i~I----s~sdL~~~~~v 530 (979)
.+|.|.+.+|..|.-.+.--..+..-.....+...+|||+|+||||||++|+++++......+.. ++..+......
T Consensus 203 p~i~G~~~~k~~l~l~l~gg~~~~~~~~~~~r~~~~vLL~G~pGtGKs~lar~l~~~~~r~~~~~~~~~~~~~l~~~~~~ 282 (509)
T smart00350 203 PSIYGHEDIKKAILLLLFGGVHKNLPDGMKIRGDINILLLGDPGTAKSQLLKYVEKTAPRAVYTTGKGSSAVGLTAAVTR 282 (509)
T ss_pred ccccCcHHHHHHHHHHHhCCCccccCCCccccccceEEEeCCCChhHHHHHHHHHHHcCcceEcCCCCCCcCCccccceE
Confidence 46889999877765222110001000011223345899999999999999999999876433222 22222111000
Q ss_pred c--cchhhHH-HHHHHHHhcCCeEEEEcCccccccccccccCCCchhhHHHHHHHHhhhccc-----------ccCCeEE
Q 035561 531 G--QSASNVR-ELFQTARDLAPVIIFVEDFDLFAGVRGQFIHTKQQDHESFINQLLVELDGF-----------EKQDGVV 596 (979)
Q Consensus 531 G--~~~~~Ir-~lF~~A~~~aP~ILfIDEIDaL~~~r~~~~~~~~~~~~~iln~LL~~LDg~-----------~~~~~Vi 596 (979)
. .++..++ ..+.. ...++++|||+|.+.. .....|+..|+.- .-...+.
T Consensus 283 ~~~~g~~~~~~G~l~~---A~~Gil~iDEi~~l~~--------------~~q~~L~e~me~~~i~i~k~G~~~~l~~~~~ 345 (509)
T smart00350 283 DPETREFTLEGGALVL---ADNGVCCIDEFDKMDD--------------SDRTAIHEAMEQQTISIAKAGITTTLNARCS 345 (509)
T ss_pred ccCcceEEecCccEEe---cCCCEEEEechhhCCH--------------HHHHHHHHHHhcCEEEEEeCCEEEEecCCcE
Confidence 0 0000000 01111 2358999999998732 2233444444321 1124578
Q ss_pred EEecccchh-------------hchhhhhcCCceeeE-eccCCCCHHHHHHHHHHHHHh
Q 035561 597 LMATTRNIK-------------QIDEALQRPGRMDRI-FNLQKPTQSEREKILRIAAQE 641 (979)
Q Consensus 597 VIATTN~pe-------------~LDpALlRpgRFd~~-I~~~~Pd~eeR~~IL~~~l~~ 641 (979)
||||+|..+ .|++++++ |||.. +..+.|+.+...+|.++.+..
T Consensus 346 viAa~NP~~g~y~~~~~~~~n~~l~~~lLs--RFdLi~~~~d~~~~~~d~~i~~~i~~~ 402 (509)
T smart00350 346 VLAAANPIGGRYDPKLTPEENIDLPAPILS--RFDLLFVVLDEVDEERDRELAKHVVDL 402 (509)
T ss_pred EEEEeCCCCcccCCCcChhhccCCChHHhC--ceeeEEEecCCCChHHHHHHHHHHHHh
Confidence 999999742 58999999 99986 455889999999999987653
No 170
>COG0470 HolB ATPase involved in DNA replication [DNA replication, recombination, and repair]
Probab=98.98 E-value=5.1e-09 Score=115.95 Aligned_cols=150 Identities=20% Similarity=0.277 Sum_probs=103.1
Q ss_pred CcccCcHHHHHHHHHHHHhhcChhHHHhcCCCCCceeEecCCCCCChHHHHHHHHHHcC---------------------
Q 035561 455 KDFASVESMREEINEVVAFLQNPSAFQEMGARAPRGVLIVGERGTGKTSLALAIAAEAR--------------------- 513 (979)
Q Consensus 455 ~DIvGleevke~L~eiV~~L~~p~~f~~lG~~~P~gVLL~GPPGTGKTtLArAlA~elg--------------------- 513 (979)
++++|.++....+...+..- + +.|..+||+||||||||++|.++|+++.
T Consensus 1 ~~~~~~~~~~~~l~~~~~~~---------~-~~~halL~~Gp~G~Gktt~a~~lA~~l~~~~~~~~~~~~~~~~~~~~~~ 70 (325)
T COG0470 1 DELVPWQEAVKRLLVQALES---------G-RLPHALLFYGPPGVGKTTAALALAKELLCENPTGLLPCGHCRSCKLIPA 70 (325)
T ss_pred CCcccchhHHHHHHHHHHhc---------C-CCCceeeeeCCCCCCHHHHHHHHHHHHhCCCcccCCcccchhhhhHHhh
Confidence 35677777777666444311 1 3344699999999999999999999986
Q ss_pred ---CCEEEeechhhhhhhhcccchhhHHHHHHHHHhc----CCeEEEEcCccccccccccccCCCchhhHHHHHHHHhhh
Q 035561 514 ---VPVVNVEAQELEAGLWVGQSASNVRELFQTARDL----APVIIFVEDFDLFAGVRGQFIHTKQQDHESFINQLLVEL 586 (979)
Q Consensus 514 ---~~~i~Is~sdL~~~~~vG~~~~~Ir~lF~~A~~~----aP~ILfIDEIDaL~~~r~~~~~~~~~~~~~iln~LL~~L 586 (979)
-.++.++.++.. ........++++-+..... ..-|++|||+|.+. ....|.++..+
T Consensus 71 ~~~~d~lel~~s~~~---~~~i~~~~vr~~~~~~~~~~~~~~~kviiidead~mt--------------~~A~nallk~l 133 (325)
T COG0470 71 GNHPDFLELNPSDLR---KIDIIVEQVRELAEFLSESPLEGGYKVVIIDEADKLT--------------EDAANALLKTL 133 (325)
T ss_pred cCCCceEEecccccC---CCcchHHHHHHHHHHhccCCCCCCceEEEeCcHHHHh--------------HHHHHHHHHHh
Confidence 467778877742 1223445566655555332 35799999999883 35667788777
Q ss_pred cccccCCeEEEEecccchhhchhhhhcCCceeeEeccCCCCHHHHHHHHH
Q 035561 587 DGFEKQDGVVLMATTRNIKQIDEALQRPGRMDRIFNLQKPTQSEREKILR 636 (979)
Q Consensus 587 Dg~~~~~~ViVIATTN~pe~LDpALlRpgRFd~~I~~~~Pd~eeR~~IL~ 636 (979)
+.. ..+..+|.+||.++.+-|.+++.| ..+.|++|+...+....+
T Consensus 134 Eep--~~~~~~il~~n~~~~il~tI~SRc---~~i~f~~~~~~~~i~~~e 178 (325)
T COG0470 134 EEP--PKNTRFILITNDPSKILPTIRSRC---QRIRFKPPSRLEAIAWLE 178 (325)
T ss_pred ccC--CCCeEEEEEcCChhhccchhhhcc---eeeecCCchHHHHHHHhh
Confidence 753 445677778899999999999944 678887755444443333
No 171
>TIGR00602 rad24 checkpoint protein rad24. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=98.98 E-value=4.6e-09 Score=127.04 Aligned_cols=213 Identities=14% Similarity=0.108 Sum_probs=126.7
Q ss_pred cccCCCCCCCCcccCcHHHHHHHHHHHHhhcChhHHHhcCCCCCceeEecCCCCCChHHHHHHHHHHcCCCEEE-eechh
Q 035561 445 KRVKNPPIPLKDFASVESMREEINEVVAFLQNPSAFQEMGARAPRGVLIVGERGTGKTSLALAIAAEARVPVVN-VEAQE 523 (979)
Q Consensus 445 ~~v~~~~~~f~DIvGleevke~L~eiV~~L~~p~~f~~lG~~~P~gVLL~GPPGTGKTtLArAlA~elg~~~i~-Is~sd 523 (979)
+..+..|.+++|++|.++..+.|+.++..... +....+.++|+||||||||++++++|++++..+++ .+...
T Consensus 74 W~eKyrP~~ldel~~~~~ki~~l~~~l~~~~~-------~~~~~~illL~GP~GsGKTTl~~~la~~l~~~~~Ew~npv~ 146 (637)
T TIGR00602 74 WVEKYKPETQHELAVHKKKIEEVETWLKAQVL-------ENAPKRILLITGPSGCGKSTTIKILSKELGIQVQEWSNPTL 146 (637)
T ss_pred hHHHhCCCCHHHhcCcHHHHHHHHHHHHhccc-------ccCCCcEEEEECCCCCCHHHHHHHHHHHhhhHHHHHhhhhh
Confidence 44578889999999999988888876654221 22333458999999999999999999999865533 21110
Q ss_pred ---hhh---------hh--hcccchhhHHHHHHHHHh----------cCCeEEEEcCccccccccccccCCCchhhHHHH
Q 035561 524 ---LEA---------GL--WVGQSASNVRELFQTARD----------LAPVIIFVEDFDLFAGVRGQFIHTKQQDHESFI 579 (979)
Q Consensus 524 ---L~~---------~~--~vG~~~~~Ir~lF~~A~~----------~aP~ILfIDEIDaL~~~r~~~~~~~~~~~~~il 579 (979)
... .. ........++.++..|.. ....||||||++.+... . ...+
T Consensus 147 ~~~~~~~~~~~~s~~~~~~~~~s~~~~F~~fl~~a~~~~~~~g~~~~~~~~IILIDEiPn~~~r-------~----~~~l 215 (637)
T TIGR00602 147 PDFQKNDHKVTLSLESCFSNFQSQIEVFSEFLLRATNKLQMLGDDLMTDKKIILVEDLPNQFYR-------D----TRAL 215 (637)
T ss_pred hcccccccccchhhhhccccccchHHHHHHHHHHHHhhhcccccccCCceeEEEeecchhhchh-------h----HHHH
Confidence 000 00 011223445555555542 24579999999977521 1 1123
Q ss_pred HHHHh-hhcccccCCeEEEEecccchh--------------hchhhhhcCCceeeEeccCCCCHHHHHHHHHHHHHhccc
Q 035561 580 NQLLV-ELDGFEKQDGVVLMATTRNIK--------------QIDEALQRPGRMDRIFNLQKPTQSEREKILRIAAQETMD 644 (979)
Q Consensus 580 n~LL~-~LDg~~~~~~ViVIATTN~pe--------------~LDpALlRpgRFd~~I~~~~Pd~eeR~~IL~~~l~~~~~ 644 (979)
..+|. ... +.....+|+++|..+. .|.+++++..|. .+|.|++.+.....+.|+..++....
T Consensus 216 q~lLr~~~~--e~~~~pLI~I~TE~~~~~~~~~~~~f~~~~lL~~eLls~~rv-~~I~FnPia~t~l~K~L~rIl~~E~~ 292 (637)
T TIGR00602 216 HEILRWKYV--SIGRCPLVFIITESLEGDNNQRRLLFPAETIMNKEILEEPRV-SNISFNPIAPTIMKKFLNRIVTIEAK 292 (637)
T ss_pred HHHHHHHhh--cCCCceEEEEecCCccccccccccccchhcccCHhHhcccce-eEEEeCCCCHHHHHHHHHHHHHhhhh
Confidence 33333 111 1222223333332221 134778753344 47999999999988888877765311
Q ss_pred hh-----hhhhhhHHHHHHHcCCCCHHHHHHHHHHHhhhhhcc
Q 035561 645 EE-----LIDLVDWRKVAEKTALLRPIELKLVPVALEGSAFRS 682 (979)
Q Consensus 645 ~~-----l~~dvdL~~LA~~T~GfsgaDL~~Lv~aa~~aa~r~ 682 (979)
.. ......+..|+....| |+......++..+.+.
T Consensus 293 ~~~~~~~~p~~~~l~~I~~~s~G----DiRsAIn~LQf~~~~~ 331 (637)
T TIGR00602 293 KNGEKIKVPKKTSVELLCQGCSG----DIRSAINSLQFSSSKS 331 (637)
T ss_pred ccccccccCCHHHHHHHHHhCCC----hHHHHHHHHHHHHhcC
Confidence 00 1123456677775554 9998888888776543
No 172
>COG1220 HslU ATP-dependent protease HslVU (ClpYQ), ATPase subunit [Posttranslational modification, protein turnover, chaperones]
Probab=98.97 E-value=3.5e-09 Score=116.83 Aligned_cols=83 Identities=24% Similarity=0.334 Sum_probs=62.8
Q ss_pred eEEEEcCccccccccccccCCCchhhHHHHHHHHhhhccc--------ccCCeEEEEeccc----chhhchhhhhcCCce
Q 035561 550 VIIFVEDFDLFAGVRGQFIHTKQQDHESFINQLLVELDGF--------EKQDGVVLMATTR----NIKQIDEALQRPGRM 617 (979)
Q Consensus 550 ~ILfIDEIDaL~~~r~~~~~~~~~~~~~iln~LL~~LDg~--------~~~~~ViVIATTN----~pe~LDpALlRpgRF 617 (979)
+|+||||||.++.+.+. ++.+-..+-+-..||-.++|. ..++.+++||+.. .|++|-|.|.. ||
T Consensus 252 GIvFIDEIDKIa~~~~~--g~~dvSREGVQRDlLPlvEGstV~TKyG~VkTdHILFIasGAFh~sKPSDLiPELQG--Rf 327 (444)
T COG1220 252 GIVFIDEIDKIAKRGGS--GGPDVSREGVQRDLLPLVEGSTVSTKYGPVKTDHILFIASGAFHVAKPSDLIPELQG--RF 327 (444)
T ss_pred CeEEEehhhHHHhcCCC--CCCCcchhhhcccccccccCceeeccccccccceEEEEecCceecCChhhcChhhcC--CC
Confidence 89999999999876542 121223344555677777763 3456789998864 48899999976 99
Q ss_pred eeEeccCCCCHHHHHHHHH
Q 035561 618 DRIFNLQKPTQSEREKILR 636 (979)
Q Consensus 618 d~~I~~~~Pd~eeR~~IL~ 636 (979)
+-.+++...+.++-..||.
T Consensus 328 PIRVEL~~Lt~~Df~rILt 346 (444)
T COG1220 328 PIRVELDALTKEDFERILT 346 (444)
T ss_pred ceEEEcccCCHHHHHHHHc
Confidence 9999999999999998886
No 173
>PF06068 TIP49: TIP49 C-terminus; InterPro: IPR010339 This family consists of the C-terminal region of several eukaryotic and archaeal RuvB-like 1 (Pontin or TIP49a) and RuvB-like 2 (Reptin or TIP49b) proteins. The N-terminal domain contains the AAA ATPase, central region IPR003959 from INTERPRO domain. In zebrafish, the liebeskummer (lik) mutation, causes development of hyperplastic embryonic hearts. lik encodes Reptin, a component of a DNA-stimulated ATPase complex. Beta-catenin and Pontin, a DNA-stimulated ATPase that is often part of complexes with Reptin, are in the same genetic pathways. The Reptin/Pontin ratio serves to regulate heart growth during development, at least in part via the beta-catenin pathway []. TBP-interacting protein 49 (TIP49) was originally identified as a TBP-binding protein, and two related proteins are encoded by individual genes, tip49a and b. Although the function of this gene family has not been elucidated, they are supposed to play a critical role in nuclear events because they interact with various kinds of nuclear factors and have DNA helicase activities. TIP49a has been suggested to act as an autoantigen in some patients with autoimmune diseases [].; GO: 0003678 DNA helicase activity, 0005524 ATP binding; PDB: 2XSZ_E 2CQA_A 2C9O_C.
Probab=98.97 E-value=1.4e-08 Score=114.47 Aligned_cols=67 Identities=36% Similarity=0.505 Sum_probs=52.2
Q ss_pred CCCCcccCcHHHHHHHHHHHHhhcChhHHHhcCCCCCceeEecCCCCCChHHHHHHHHHHcC--CCEEEeechhhh
Q 035561 452 IPLKDFASVESMREEINEVVAFLQNPSAFQEMGARAPRGVLIVGERGTGKTSLALAIAAEAR--VPVVNVEAQELE 525 (979)
Q Consensus 452 ~~f~DIvGleevke~L~eiV~~L~~p~~f~~lG~~~P~gVLL~GPPGTGKTtLArAlA~elg--~~~i~Is~sdL~ 525 (979)
...+.++|+.++++..--+++..+..+ -..+++||.||||||||.+|-++|+++| +||..+++|++.
T Consensus 21 ~~~~GlVGQ~~AReAagiiv~mIk~~K-------~aGr~iLiaGppGtGKTAlA~~ia~eLG~~~PF~~isgSEiy 89 (398)
T PF06068_consen 21 YIADGLVGQEKAREAAGIIVDMIKEGK-------IAGRAILIAGPPGTGKTALAMAIAKELGEDVPFVSISGSEIY 89 (398)
T ss_dssp SEETTEES-HHHHHHHHHHHHHHHTT---------TT-EEEEEE-TTSSHHHHHHHHHHHCTTTS-EEEEEGGGG-
T ss_pred eccccccChHHHHHHHHHHHHHHhccc-------ccCcEEEEeCCCCCCchHHHHHHHHHhCCCCCeeEcccceee
Confidence 345789999999999988887765432 2357899999999999999999999997 899999999885
No 174
>PF01078 Mg_chelatase: Magnesium chelatase, subunit ChlI; InterPro: IPR000523 Magnesium-chelatase is a three-component enzyme that catalyses the insertion of Mg2+ into protoporphyrin IX. This is the first unique step in the synthesis of (bacterio)chlorophyll. As a result, it is thought that Mg-chelatase has an important role in channeling intermediates into the (bacterio)chlorophyll branch in response to conditions suitable for photosynthetic growth. ChlI and BchD have molecular weights between 38-42 kDa.; GO: 0016851 magnesium chelatase activity, 0015979 photosynthesis, 0015995 chlorophyll biosynthetic process; PDB: 2X31_J 1G8P_A 3K1J_B.
Probab=98.97 E-value=7.1e-10 Score=116.70 Aligned_cols=46 Identities=26% Similarity=0.419 Sum_probs=35.7
Q ss_pred CCCcccCcHHHHHHHHHHHHhhcChhHHHhcCCCCCceeEecCCCCCChHHHHHHHHHHc
Q 035561 453 PLKDFASVESMREEINEVVAFLQNPSAFQEMGARAPRGVLIVGERGTGKTSLALAIAAEA 512 (979)
Q Consensus 453 ~f~DIvGleevke~L~eiV~~L~~p~~f~~lG~~~P~gVLL~GPPGTGKTtLArAlA~el 512 (979)
.|+||+|++.+|..|.-. ..| +.|+||+||||||||++|+++..-+
T Consensus 1 Df~dI~GQe~aKrAL~iA-----------AaG---~h~lLl~GppGtGKTmlA~~l~~lL 46 (206)
T PF01078_consen 1 DFSDIVGQEEAKRALEIA-----------AAG---GHHLLLIGPPGTGKTMLARRLPSLL 46 (206)
T ss_dssp -TCCSSSTHHHHHHHHHH-----------HHC---C--EEEES-CCCTHHHHHHHHHHCS
T ss_pred ChhhhcCcHHHHHHHHHH-----------HcC---CCCeEEECCCCCCHHHHHHHHHHhC
Confidence 389999999999998732 223 3589999999999999999999855
No 175
>PRK05707 DNA polymerase III subunit delta'; Validated
Probab=98.96 E-value=6.8e-09 Score=117.16 Aligned_cols=150 Identities=21% Similarity=0.240 Sum_probs=104.7
Q ss_pred CCCCceeEecCCCCCChHHHHHHHHHHcCCC------------------------EEEeechhhhhhhhcccchhhHHHH
Q 035561 485 ARAPRGVLIVGERGTGKTSLALAIAAEARVP------------------------VVNVEAQELEAGLWVGQSASNVREL 540 (979)
Q Consensus 485 ~~~P~gVLL~GPPGTGKTtLArAlA~elg~~------------------------~i~Is~sdL~~~~~vG~~~~~Ir~l 540 (979)
.+.|.++||+||+|+|||++|+++|+.+.+. ++.+...+- + ...+...+|++
T Consensus 19 ~r~~ha~Lf~G~~G~GK~~~A~~~A~~llC~~~~~~~~Cg~C~sC~~~~~g~HPD~~~i~~~~~--~--~~i~id~iR~l 94 (328)
T PRK05707 19 GRHPHAYLLHGPAGIGKRALAERLAAALLCEAPQGGGACGSCKGCQLLRAGSHPDNFVLEPEEA--D--KTIKVDQVREL 94 (328)
T ss_pred CCcceeeeeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHhcCCCCCEEEEeccCC--C--CCCCHHHHHHH
Confidence 4567789999999999999999999988542 111111000 0 01234677877
Q ss_pred HHHHHh----cCCeEEEEcCccccccccccccCCCchhhHHHHHHHHhhhcccccCCeEEEEecccchhhchhhhhcCCc
Q 035561 541 FQTARD----LAPVIIFVEDFDLFAGVRGQFIHTKQQDHESFINQLLVELDGFEKQDGVVLMATTRNIKQIDEALQRPGR 616 (979)
Q Consensus 541 F~~A~~----~aP~ILfIDEIDaL~~~r~~~~~~~~~~~~~iln~LL~~LDg~~~~~~ViVIATTN~pe~LDpALlRpgR 616 (979)
.+.+.. ....|++||++|.+ .....|.||+.|+. ..+++++|.+|++++.|.|.+++ |
T Consensus 95 ~~~~~~~~~~~~~kv~iI~~a~~m--------------~~~aaNaLLK~LEE--Pp~~~~fiL~t~~~~~ll~TI~S--R 156 (328)
T PRK05707 95 VSFVVQTAQLGGRKVVLIEPAEAM--------------NRNAANALLKSLEE--PSGDTVLLLISHQPSRLLPTIKS--R 156 (328)
T ss_pred HHHHhhccccCCCeEEEECChhhC--------------CHHHHHHHHHHHhC--CCCCeEEEEEECChhhCcHHHHh--h
Confidence 766643 23578999999987 34677889998886 34567888899999999999999 5
Q ss_pred eeeEeccCCCCHHHHHHHHHHHHHhccchhhhhhhhHHHHHHHcCCC
Q 035561 617 MDRIFNLQKPTQSEREKILRIAAQETMDEELIDLVDWRKVAEKTALL 663 (979)
Q Consensus 617 Fd~~I~~~~Pd~eeR~~IL~~~l~~~~~~~l~~dvdL~~LA~~T~Gf 663 (979)
. ..+.|++|+.++..+.|....... .+.+...++..+.|-
T Consensus 157 c-~~~~~~~~~~~~~~~~L~~~~~~~------~~~~~~~~l~la~Gs 196 (328)
T PRK05707 157 C-QQQACPLPSNEESLQWLQQALPES------DERERIELLTLAGGS 196 (328)
T ss_pred c-eeeeCCCcCHHHHHHHHHHhcccC------ChHHHHHHHHHcCCC
Confidence 5 569999999999988887654211 122334556666663
No 176
>TIGR00764 lon_rel lon-related putative ATP-dependent protease. Members of this family from Pyrococcus horikoshii and Pyrococcus abyssi each contain a predicted intein.
Probab=98.95 E-value=6.4e-09 Score=126.02 Aligned_cols=88 Identities=22% Similarity=0.232 Sum_probs=61.3
Q ss_pred cCCCCCCCCcccCcHHHHHHHHHHHHhhcChhHHHhcCCCCCceeEecCCCCCChHHHHHHHHHHcCCC----EEEe-ec
Q 035561 447 VKNPPIPLKDFASVESMREEINEVVAFLQNPSAFQEMGARAPRGVLIVGERGTGKTSLALAIAAEARVP----VVNV-EA 521 (979)
Q Consensus 447 v~~~~~~f~DIvGleevke~L~eiV~~L~~p~~f~~lG~~~P~gVLL~GPPGTGKTtLArAlA~elg~~----~i~I-s~ 521 (979)
+..|..-+++++|++++++.|+..+. .+.+++|+||||||||++++++|+.++.+ ++++ +.
T Consensus 10 ~~~~~~~~~~viG~~~a~~~l~~a~~--------------~~~~~ll~G~pG~GKT~la~~la~~l~~~~~~~~~~~~n~ 75 (608)
T TIGR00764 10 IPVPERLIDQVIGQEEAVEIIKKAAK--------------QKRNVLLIGEPGVGKSMLAKAMAELLPDEELEDILVYPNP 75 (608)
T ss_pred cCcchhhHhhccCHHHHHHHHHHHHH--------------cCCCEEEECCCCCCHHHHHHHHHHHcCchhheeEEEEeCC
Confidence 45667789999999999998875542 12479999999999999999999998654 2222 22
Q ss_pred ----hhhhhhhhcccchhhHHHHHHHHHhcC
Q 035561 522 ----QELEAGLWVGQSASNVRELFQTARDLA 548 (979)
Q Consensus 522 ----sdL~~~~~vG~~~~~Ir~lF~~A~~~a 548 (979)
.++......|.+.+.++..|..|++..
T Consensus 76 ~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~ 106 (608)
T TIGR00764 76 EDPNMPRIVEVPAGEGREIVEDYKKKAFKQP 106 (608)
T ss_pred CCCchHHHHHHHHhhchHHHHHHHHHhhccc
Confidence 233333455666666666666665433
No 177
>PRK11331 5-methylcytosine-specific restriction enzyme subunit McrB; Provisional
Probab=98.94 E-value=7.3e-09 Score=120.13 Aligned_cols=142 Identities=17% Similarity=0.278 Sum_probs=86.0
Q ss_pred CCcccCcHHHHHHHHHHHHhhcChhHHHhcCCCCCceeEecCCCCCChHHHHHHHHHHcCC-----C--EEEee----ch
Q 035561 454 LKDFASVESMREEINEVVAFLQNPSAFQEMGARAPRGVLIVGERGTGKTSLALAIAAEARV-----P--VVNVE----AQ 522 (979)
Q Consensus 454 f~DIvGleevke~L~eiV~~L~~p~~f~~lG~~~P~gVLL~GPPGTGKTtLArAlA~elg~-----~--~i~Is----~s 522 (979)
++++.+.++..+.+... +. ..++++|+||||||||++|+++|..+.. + .+.++ ..
T Consensus 174 l~d~~i~e~~le~l~~~---L~-----------~~~~iil~GppGtGKT~lA~~la~~l~~~~~~~~v~~VtFHpsySYe 239 (459)
T PRK11331 174 LNDLFIPETTIETILKR---LT-----------IKKNIILQGPPGVGKTFVARRLAYLLTGEKAPQRVNMVQFHQSYSYE 239 (459)
T ss_pred hhcccCCHHHHHHHHHH---Hh-----------cCCCEEEECCCCCCHHHHHHHHHHHhcCCcccceeeEEeecccccHH
Confidence 56677766555554322 21 2457999999999999999999998742 1 22222 12
Q ss_pred hhhhhhhcc-cch----hhHHHHHHHHHhc--CCeEEEEcCccccccccccccCCCchhhHHHHHHHHhhh---------
Q 035561 523 ELEAGLWVG-QSA----SNVRELFQTARDL--APVIIFVEDFDLFAGVRGQFIHTKQQDHESFINQLLVEL--------- 586 (979)
Q Consensus 523 dL~~~~~vG-~~~----~~Ir~lF~~A~~~--aP~ILfIDEIDaL~~~r~~~~~~~~~~~~~iln~LL~~L--------- 586 (979)
+++.+...+ .+- ..+.++...|+.. .|++||||||+.-...+ +...++..|
T Consensus 240 DFI~G~rP~~vgy~~~~G~f~~~~~~A~~~p~~~~vliIDEINRani~k-------------iFGel~~lLE~~~rg~~~ 306 (459)
T PRK11331 240 DFIQGYRPNGVGFRRKDGIFYNFCQQAKEQPEKKYVFIIDEINRANLSK-------------VFGEVMMLMEHDKRGENW 306 (459)
T ss_pred HHhcccCCCCCCeEecCchHHHHHHHHHhcccCCcEEEEehhhccCHHH-------------hhhhhhhhcccccccccc
Confidence 333111111 111 1234445666543 58999999998543222 122222222
Q ss_pred -----------cccccCCeEEEEecccchh----hchhhhhcCCceeeEeccCC
Q 035561 587 -----------DGFEKQDGVVLMATTRNIK----QIDEALQRPGRMDRIFNLQK 625 (979)
Q Consensus 587 -----------Dg~~~~~~ViVIATTN~pe----~LDpALlRpgRFd~~I~~~~ 625 (979)
+.|.-..++.||||+|..+ .+|.||+| ||. .|++.+
T Consensus 307 ~v~l~y~e~d~e~f~iP~Nl~IIgTMNt~Drs~~~lD~AlrR--RF~-fi~i~p 357 (459)
T PRK11331 307 SVPLTYSENDEERFYVPENVYIIGLMNTADRSLAVVDYALRR--RFS-FIDIEP 357 (459)
T ss_pred ceeeeccccccccccCCCCeEEEEecCccccchhhccHHHHh--hhh-eEEecC
Confidence 2244557899999999977 79999999 995 455554
No 178
>PRK13531 regulatory ATPase RavA; Provisional
Probab=98.92 E-value=1.3e-08 Score=119.08 Aligned_cols=154 Identities=15% Similarity=0.113 Sum_probs=91.4
Q ss_pred CcccCcHHHHHHHHHHHHhhcChhHHHhcCCCCCceeEecCCCCCChHHHHHHHHHHcCC--CEEEeechhhhhhhhccc
Q 035561 455 KDFASVESMREEINEVVAFLQNPSAFQEMGARAPRGVLIVGERGTGKTSLALAIAAEARV--PVVNVEAQELEAGLWVGQ 532 (979)
Q Consensus 455 ~DIvGleevke~L~eiV~~L~~p~~f~~lG~~~P~gVLL~GPPGTGKTtLArAlA~elg~--~~i~Is~sdL~~~~~vG~ 532 (979)
+.|+|.+++.+.+.... -...+|||+||||||||++|++++...+. +|....+.-...+...|.
T Consensus 20 ~~i~gre~vI~lll~aa--------------lag~hVLL~GpPGTGKT~LAraLa~~~~~~~~F~~~~~~fttp~DLfG~ 85 (498)
T PRK13531 20 KGLYERSHAIRLCLLAA--------------LSGESVFLLGPPGIAKSLIARRLKFAFQNARAFEYLMTRFSTPEEVFGP 85 (498)
T ss_pred hhccCcHHHHHHHHHHH--------------ccCCCEEEECCCChhHHHHHHHHHHHhcccCcceeeeeeecCcHHhcCc
Confidence 45788887777665322 23457999999999999999999997643 555444321000111221
Q ss_pred c-hhhH--HHHHHHHHhc---CCeEEEEcCccccccccccccCCCchhhHHHHHHHHhhhcc-c-c------cCCeEEEE
Q 035561 533 S-ASNV--RELFQTARDL---APVIIFVEDFDLFAGVRGQFIHTKQQDHESFINQLLVELDG-F-E------KQDGVVLM 598 (979)
Q Consensus 533 ~-~~~I--r~lF~~A~~~---aP~ILfIDEIDaL~~~r~~~~~~~~~~~~~iln~LL~~LDg-~-~------~~~~ViVI 598 (979)
. -... ...|...... ...+||+|||..+ ...+.+.||..|+. . . .-+..+++
T Consensus 86 l~i~~~~~~g~f~r~~~G~L~~A~lLfLDEI~ra--------------sp~~QsaLLeam~Er~~t~g~~~~~lp~rfiv 151 (498)
T PRK13531 86 LSIQALKDEGRYQRLTSGYLPEAEIVFLDEIWKA--------------GPAILNTLLTAINERRFRNGAHEEKIPMRLLV 151 (498)
T ss_pred HHHhhhhhcCchhhhcCCccccccEEeecccccC--------------CHHHHHHHHHHHHhCeEecCCeEEeCCCcEEE
Confidence 1 0110 1123221111 2249999999754 34566777777732 1 1 11224555
Q ss_pred ecccchh---hchhhhhcCCceeeEeccCCCC-HHHHHHHHHHH
Q 035561 599 ATTRNIK---QIDEALQRPGRMDRIFNLQKPT-QSEREKILRIA 638 (979)
Q Consensus 599 ATTN~pe---~LDpALlRpgRFd~~I~~~~Pd-~eeR~~IL~~~ 638 (979)
+|||... ...+++.. ||-..+.+|+|+ .++-.+||...
T Consensus 152 ~ATN~LPE~g~~leAL~D--RFliri~vp~l~~~~~e~~lL~~~ 193 (498)
T PRK13531 152 TASNELPEADSSLEALYD--RMLIRLWLDKVQDKANFRSMLTSQ 193 (498)
T ss_pred EECCCCcccCCchHHhHh--hEEEEEECCCCCchHHHHHHHHcc
Confidence 5667522 23358999 998899999997 45667888764
No 179
>PRK08058 DNA polymerase III subunit delta'; Validated
Probab=98.90 E-value=6.6e-09 Score=117.27 Aligned_cols=155 Identities=18% Similarity=0.196 Sum_probs=105.5
Q ss_pred CCCcccC-cHHHHHHHHHHHHhhcChhHHHhcCCCCCceeEecCCCCCChHHHHHHHHHHcCCCE-------EE-eechh
Q 035561 453 PLKDFAS-VESMREEINEVVAFLQNPSAFQEMGARAPRGVLIVGERGTGKTSLALAIAAEARVPV-------VN-VEAQE 523 (979)
Q Consensus 453 ~f~DIvG-leevke~L~eiV~~L~~p~~f~~lG~~~P~gVLL~GPPGTGKTtLArAlA~elg~~~-------i~-Is~sd 523 (979)
.|+.|+| ++.+++.|...+. ..+.|..+||+||+|+|||++|+++|+.+..+- -. -+|..
T Consensus 3 ~~~~i~~~q~~~~~~L~~~~~-----------~~~l~ha~Lf~G~~G~gk~~~a~~la~~l~c~~~~~~~~cg~C~~c~~ 71 (329)
T PRK08058 3 TWEQLTALQPVVVKMLQNSIA-----------KNRLSHAYLFEGAKGTGKKATALWLAKSLFCLERNGVEPCGTCTNCKR 71 (329)
T ss_pred cHHHHHhhHHHHHHHHHHHHH-----------cCCCCceEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCCcCHHHHH
Confidence 4778888 8888888876542 234567789999999999999999999874320 00 00100
Q ss_pred hhhhh--------hcc--cchhhHHHHHHHHHh----cCCeEEEEcCccccccccccccCCCchhhHHHHHHHHhhhccc
Q 035561 524 LEAGL--------WVG--QSASNVRELFQTARD----LAPVIIFVEDFDLFAGVRGQFIHTKQQDHESFINQLLVELDGF 589 (979)
Q Consensus 524 L~~~~--------~vG--~~~~~Ir~lF~~A~~----~aP~ILfIDEIDaL~~~r~~~~~~~~~~~~~iln~LL~~LDg~ 589 (979)
+..+. ..| .+...+|++.+.+.. ....|++|||+|.+ .....|.||+.|+.
T Consensus 72 ~~~~~hpD~~~i~~~~~~i~id~ir~l~~~~~~~~~~~~~kvviI~~a~~~--------------~~~a~NaLLK~LEE- 136 (329)
T PRK08058 72 IDSGNHPDVHLVAPDGQSIKKDQIRYLKEEFSKSGVESNKKVYIIEHADKM--------------TASAANSLLKFLEE- 136 (329)
T ss_pred HhcCCCCCEEEeccccccCCHHHHHHHHHHHhhCCcccCceEEEeehHhhh--------------CHHHHHHHHHHhcC-
Confidence 10000 011 123456666665542 23469999999877 34467789988886
Q ss_pred ccCCeEEEEecccchhhchhhhhcCCceeeEeccCCCCHHHHHHHHHH
Q 035561 590 EKQDGVVLMATTRNIKQIDEALQRPGRMDRIFNLQKPTQSEREKILRI 637 (979)
Q Consensus 590 ~~~~~ViVIATTN~pe~LDpALlRpgRFd~~I~~~~Pd~eeR~~IL~~ 637 (979)
..+.+++|.+|+.++.|.|+++++| ..++|++|+.++..++|+.
T Consensus 137 -Pp~~~~~Il~t~~~~~ll~TIrSRc---~~i~~~~~~~~~~~~~L~~ 180 (329)
T PRK08058 137 -PSGGTTAILLTENKHQILPTILSRC---QVVEFRPLPPESLIQRLQE 180 (329)
T ss_pred -CCCCceEEEEeCChHhCcHHHHhhc---eeeeCCCCCHHHHHHHHHH
Confidence 3445666668888899999999944 7899999999988777763
No 180
>KOG0745 consensus Putative ATP-dependent Clp-type protease (AAA+ ATPase superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=98.86 E-value=7.5e-09 Score=117.12 Aligned_cols=137 Identities=27% Similarity=0.443 Sum_probs=94.5
Q ss_pred ceeEecCCCCCChHHHHHHHHHHcCCCEEEeechhhhhhhhcccc-hhhHHHHHHHHH----hcCCeEEEEcCccccccc
Q 035561 489 RGVLIVGERGTGKTSLALAIAAEARVPVVNVEAQELEAGLWVGQS-ASNVRELFQTAR----DLAPVIIFVEDFDLFAGV 563 (979)
Q Consensus 489 ~gVLL~GPPGTGKTtLArAlA~elg~~~i~Is~sdL~~~~~vG~~-~~~Ir~lF~~A~----~~aP~ILfIDEIDaL~~~ 563 (979)
.+|||.||+|+|||+||+.+|+-+++||..++|..|...-|+|+. ++.+..++..|. +.+-+|+||||+|.|..+
T Consensus 227 SNvLllGPtGsGKTllaqTLAr~ldVPfaIcDcTtLTQAGYVGeDVEsvi~KLl~~A~~nVekAQqGIVflDEvDKi~~~ 306 (564)
T KOG0745|consen 227 SNVLLLGPTGSGKTLLAQTLARVLDVPFAICDCTTLTQAGYVGEDVESVIQKLLQEAEYNVEKAQQGIVFLDEVDKITKK 306 (564)
T ss_pred ccEEEECCCCCchhHHHHHHHHHhCCCeEEecccchhhcccccccHHHHHHHHHHHccCCHHHHhcCeEEEehhhhhccc
Confidence 479999999999999999999999999999999999877789876 455666776663 346799999999999743
Q ss_pred cccccCCCch-hhHHHHHHHHhhhccc-----------ccCCeEEEEecccc-------hhhchhhhhcCCcee-eEecc
Q 035561 564 RGQFIHTKQQ-DHESFINQLLVELDGF-----------EKQDGVVLMATTRN-------IKQIDEALQRPGRMD-RIFNL 623 (979)
Q Consensus 564 r~~~~~~~~~-~~~~iln~LL~~LDg~-----------~~~~~ViVIATTN~-------pe~LDpALlRpgRFd-~~I~~ 623 (979)
..+- +...+ .-+-+-..||+.++|- ......+.|=|||- ...||.-+-| |.+ ..+-|
T Consensus 307 ~~~i-~~~RDVsGEGVQQaLLKllEGtvVnVpeK~~~~~~rgd~vqiDTtnILFiasGAF~~Ldk~I~r--R~~d~slGF 383 (564)
T KOG0745|consen 307 AESI-HTSRDVSGEGVQQALLKLLEGTVVNVPEKGSRRKPRGDTVQIDTTNILFIASGAFVGLDKIISR--RLDDKSLGF 383 (564)
T ss_pred Cccc-cccccccchhHHHHHHHHhcccEEcccCCCCCCCCCCCeEEEeccceEEEecccccchHHHHHH--hhcchhccc
Confidence 3221 11111 1234555788888773 01112344444443 3456766666 544 56778
Q ss_pred CCCCH
Q 035561 624 QKPTQ 628 (979)
Q Consensus 624 ~~Pd~ 628 (979)
..|+-
T Consensus 384 g~~s~ 388 (564)
T KOG0745|consen 384 GAPSS 388 (564)
T ss_pred CCCCC
Confidence 88865
No 181
>smart00763 AAA_PrkA PrkA AAA domain. This is a family of PrkA bacterial and archaeal serine kinases approximately 630 residues long. This is the N-terminal AAA domain.
Probab=98.86 E-value=3.6e-08 Score=111.71 Aligned_cols=83 Identities=16% Similarity=0.172 Sum_probs=57.4
Q ss_pred CCC-cccCcHHHHHHHHHHHHhhcChhHHHhcCCC-CCceeEecCCCCCChHHHHHHHHHHcCC-------CEEEeec--
Q 035561 453 PLK-DFASVESMREEINEVVAFLQNPSAFQEMGAR-APRGVLIVGERGTGKTSLALAIAAEARV-------PVVNVEA-- 521 (979)
Q Consensus 453 ~f~-DIvGleevke~L~eiV~~L~~p~~f~~lG~~-~P~gVLL~GPPGTGKTtLArAlA~elg~-------~~i~Is~-- 521 (979)
-|+ ++.|+++.+++|.+.+ +... .|.. ..+.++|+|||||||||+|++||+.++. +++.+..
T Consensus 48 ~F~~~~~G~~~~i~~lv~~l---~~~a----~g~~~~r~il~L~GPPGsGKStla~~La~~l~~ys~t~eG~~Y~~~~~~ 120 (361)
T smart00763 48 FFDHDFFGMEEAIERFVNYF---KSAA----QGLEERKQILYLLGPVGGGKSSLVECLKRGLEEYSKTPEGRRYTFKWNG 120 (361)
T ss_pred ccchhccCcHHHHHHHHHHH---HHHH----hcCCCCCcEEEEECCCCCCHHHHHHHHHHHHhhhcccccCceEEEEecC
Confidence 366 8999998876665444 3221 2333 3467899999999999999999999987 8999987
Q ss_pred --hhhhhhhhcccchhhHHHHHHH
Q 035561 522 --QELEAGLWVGQSASNVRELFQT 543 (979)
Q Consensus 522 --sdL~~~~~vG~~~~~Ir~lF~~ 543 (979)
+.+. +...+.....+|..|..
T Consensus 121 ~~sp~~-e~Pl~l~p~~~r~~~~~ 143 (361)
T smart00763 121 EESPMH-EDPLHLFPDELREDLED 143 (361)
T ss_pred CCCCCc-cCCcccCCHHHHHHHHH
Confidence 5554 33344444555554443
No 182
>KOG0741 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=98.86 E-value=1.4e-08 Score=117.11 Aligned_cols=143 Identities=20% Similarity=0.306 Sum_probs=104.9
Q ss_pred CceeEecCCCCCChHHHHHHHHHHcCCCEEEee-chhhhhhhhcccchhhHHHHHHHHHhcCCeEEEEcCcccccccccc
Q 035561 488 PRGVLIVGERGTGKTSLALAIAAEARVPVVNVE-AQELEAGLWVGQSASNVRELFQTARDLAPVIIFVEDFDLFAGVRGQ 566 (979)
Q Consensus 488 P~gVLL~GPPGTGKTtLArAlA~elg~~~i~Is-~sdL~~~~~vG~~~~~Ir~lF~~A~~~aP~ILfIDEIDaL~~~r~~ 566 (979)
-.++||.||||+|||+||-.+|...+.||+.+- +.+++ +......-..++.+|+.|.+..-+||++|+|+.|..-
T Consensus 538 lvSvLl~Gp~~sGKTaLAA~iA~~S~FPFvKiiSpe~mi-G~sEsaKc~~i~k~F~DAYkS~lsiivvDdiErLiD~--- 613 (744)
T KOG0741|consen 538 LVSVLLEGPPGSGKTALAAKIALSSDFPFVKIISPEDMI-GLSESAKCAHIKKIFEDAYKSPLSIIVVDDIERLLDY--- 613 (744)
T ss_pred ceEEEEecCCCCChHHHHHHHHhhcCCCeEEEeChHHcc-CccHHHHHHHHHHHHHHhhcCcceEEEEcchhhhhcc---
Confidence 367999999999999999999999999999864 44543 3222233346889999999988899999999987531
Q ss_pred ccCCCchhhHHHHHHHHhhhcccccC-CeEEEEecccchhhch-hhhhcCCceeeEeccCCCCH-HHHHHHHHH
Q 035561 567 FIHTKQQDHESFINQLLVELDGFEKQ-DGVVLMATTRNIKQID-EALQRPGRMDRIFNLQKPTQ-SEREKILRI 637 (979)
Q Consensus 567 ~~~~~~~~~~~iln~LL~~LDg~~~~-~~ViVIATTN~pe~LD-pALlRpgRFd~~I~~~~Pd~-eeR~~IL~~ 637 (979)
..-+....+.++..|+..+..-.+. ...+|++||.+.+-|. -.++. .|+..+.+|..+. ++..++++.
T Consensus 614 -vpIGPRfSN~vlQaL~VllK~~ppkg~kLli~~TTS~~~vL~~m~i~~--~F~~~i~Vpnl~~~~~~~~vl~~ 684 (744)
T KOG0741|consen 614 -VPIGPRFSNLVLQALLVLLKKQPPKGRKLLIFGTTSRREVLQEMGILD--CFSSTIHVPNLTTGEQLLEVLEE 684 (744)
T ss_pred -cccCchhhHHHHHHHHHHhccCCCCCceEEEEecccHHHHHHHcCHHH--hhhheeecCccCchHHHHHHHHH
Confidence 1223344556677777777655433 4688889998877663 34666 8999999998866 666666664
No 183
>PRK08116 hypothetical protein; Validated
Probab=98.85 E-value=3.9e-08 Score=108.11 Aligned_cols=166 Identities=19% Similarity=0.283 Sum_probs=93.2
Q ss_pred CCCCCcccCcHHHHHHHHHHHHhhcChhHHHhcCCCCCceeEecCCCCCChHHHHHHHHHHc---CCCEEEeechhhhhh
Q 035561 451 PIPLKDFASVESMREEINEVVAFLQNPSAFQEMGARAPRGVLIVGERGTGKTSLALAIAAEA---RVPVVNVEAQELEAG 527 (979)
Q Consensus 451 ~~~f~DIvGleevke~L~eiV~~L~~p~~f~~lG~~~P~gVLL~GPPGTGKTtLArAlA~el---g~~~i~Is~sdL~~~ 527 (979)
..+|+++.-.+.....+.....+..+ |.... ..+.|++|+|+||||||+||.++|+++ +.+++.++.++++..
T Consensus 81 ~~tFdnf~~~~~~~~a~~~a~~y~~~---~~~~~-~~~~gl~l~G~~GtGKThLa~aia~~l~~~~~~v~~~~~~~ll~~ 156 (268)
T PRK08116 81 NSTFENFLFDKGSEKAYKIARKYVKK---FEEMK-KENVGLLLWGSVGTGKTYLAACIANELIEKGVPVIFVNFPQLLNR 156 (268)
T ss_pred hcchhcccCChHHHHHHHHHHHHHHH---HHhhc-cCCceEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEEHHHHHHH
Confidence 45788776444433333333333322 22111 234679999999999999999999986 789999999887632
Q ss_pred h---hcccchhhHHHHHHHHHhcCCeEEEEcCccccccccccccCCCchhhHHHHHHHHhhhcccccCCeEEEEecccc-
Q 035561 528 L---WVGQSASNVRELFQTARDLAPVIIFVEDFDLFAGVRGQFIHTKQQDHESFINQLLVELDGFEKQDGVVLMATTRN- 603 (979)
Q Consensus 528 ~---~vG~~~~~Ir~lF~~A~~~aP~ILfIDEIDaL~~~r~~~~~~~~~~~~~iln~LL~~LDg~~~~~~ViVIATTN~- 603 (979)
. |.+.......++++... ...+|+|||++... .+ ......|...++.... .+..+|.|||.
T Consensus 157 i~~~~~~~~~~~~~~~~~~l~--~~dlLviDDlg~e~---------~t---~~~~~~l~~iin~r~~-~~~~~IiTsN~~ 221 (268)
T PRK08116 157 IKSTYKSSGKEDENEIIRSLV--NADLLILDDLGAER---------DT---EWAREKVYNIIDSRYR-KGLPTIVTTNLS 221 (268)
T ss_pred HHHHHhccccccHHHHHHHhc--CCCEEEEecccCCC---------CC---HHHHHHHHHHHHHHHH-CCCCEEEECCCC
Confidence 1 11111112223333332 34699999996421 11 2223445555554322 23346666676
Q ss_pred hhh----chhhhhcCCce---eeEeccCCCCHHHHHHHHHHHH
Q 035561 604 IKQ----IDEALQRPGRM---DRIFNLQKPTQSEREKILRIAA 639 (979)
Q Consensus 604 pe~----LDpALlRpgRF---d~~I~~~~Pd~eeR~~IL~~~l 639 (979)
|+. ++..+.+ |+ ...|.++-||. |..+.+..+
T Consensus 222 ~~eL~~~~~~ri~s--Rl~e~~~~v~~~g~d~--R~~~~~ek~ 260 (268)
T PRK08116 222 LEELKNQYGKRIYD--RILEMCTPVENEGKSY--RKEIAKEKL 260 (268)
T ss_pred HHHHHHHHhHHHHH--HHHHcCEEEEeeCcCh--hHHHHHHHH
Confidence 444 4666766 53 34566666664 555555443
No 184
>COG3829 RocR Transcriptional regulator containing PAS, AAA-type ATPase, and DNA-binding domains [Transcription / Signal transduction mechanisms]
Probab=98.83 E-value=1.5e-08 Score=118.31 Aligned_cols=157 Identities=24% Similarity=0.308 Sum_probs=102.6
Q ss_pred CCCCCCcccCcHHHHHHHHHHHHhhcChhHHHhcCCCCCceeEecCCCCCChHHHHHHHHHHc---CCCEEEeechhhhh
Q 035561 450 PPIPLKDFASVESMREEINEVVAFLQNPSAFQEMGARAPRGVLIVGERGTGKTSLALAIAAEA---RVPVVNVEAQELEA 526 (979)
Q Consensus 450 ~~~~f~DIvGleevke~L~eiV~~L~~p~~f~~lG~~~P~gVLL~GPPGTGKTtLArAlA~el---g~~~i~Is~sdL~~ 526 (979)
...+|++|+|.......+.+.... .++.+.+|||.|.+||||.++|++|.+.. +-||+.+||..+-.
T Consensus 240 a~y~f~~Iig~S~~m~~~~~~akr----------~A~tdstVLi~GESGTGKElfA~~IH~~S~R~~~PFIaiNCaAiPe 309 (560)
T COG3829 240 AKYTFDDIIGESPAMLRVLELAKR----------IAKTDSTVLILGESGTGKELFARAIHNLSPRANGPFIAINCAAIPE 309 (560)
T ss_pred cccchhhhccCCHHHHHHHHHHHh----------hcCCCCcEEEecCCCccHHHHHHHHHhcCcccCCCeEEEecccCCH
Confidence 356899999999776666654422 34566789999999999999999999876 57999999965532
Q ss_pred hh------------hcccchhhHHHHHHHHHhcCCeEEEEcCccccccccccccCCCchhhHHHHHHHHhhhcc-----c
Q 035561 527 GL------------WVGQSASNVRELFQTARDLAPVIIFVEDFDLFAGVRGQFIHTKQQDHESFINQLLVELDG-----F 589 (979)
Q Consensus 527 ~~------------~vG~~~~~Ir~lF~~A~~~aP~ILfIDEIDaL~~~r~~~~~~~~~~~~~iln~LL~~LDg-----~ 589 (979)
.. |.|.....-..+|+.|.. +-||+|||..+. ...-..||..|+. +
T Consensus 310 ~LlESELFGye~GAFTGA~~~GK~GlfE~A~g---GTLFLDEIgemp--------------l~LQaKLLRVLQEkei~rv 372 (560)
T COG3829 310 TLLESELFGYEKGAFTGASKGGKPGLFELANG---GTLFLDEIGEMP--------------LPLQAKLLRVLQEKEIERV 372 (560)
T ss_pred HHHHHHHhCcCCccccccccCCCCcceeeccC---CeEEehhhccCC--------------HHHHHHHHHHHhhceEEec
Confidence 11 333333223455666644 899999998762 2233355555542 2
Q ss_pred ccC----CeEEEEecccc--hhhchhhhhcCCceee--EeccCCCCHHHHHH
Q 035561 590 EKQ----DGVVLMATTRN--IKQIDEALQRPGRMDR--IFNLQKPTQSEREK 633 (979)
Q Consensus 590 ~~~----~~ViVIATTN~--pe~LDpALlRpgRFd~--~I~~~~Pd~eeR~~ 633 (979)
.+. -.|-||||||+ .+.+-..=+|...|.| ++.+..|...+|.+
T Consensus 373 G~t~~~~vDVRIIAATN~nL~~~i~~G~FReDLYYRLNV~~i~iPPLReR~e 424 (560)
T COG3829 373 GGTKPIPVDVRIIAATNRNLEKMIAEGTFREDLYYRLNVIPITIPPLRERKE 424 (560)
T ss_pred CCCCceeeEEEEEeccCcCHHHHHhcCcchhhheeeeceeeecCCCcccCcc
Confidence 221 24899999998 2333333333333433 57777888877754
No 185
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=98.80 E-value=1.6e-07 Score=101.89 Aligned_cols=175 Identities=17% Similarity=0.164 Sum_probs=100.7
Q ss_pred eeEecCCCCCChHHHHHHHHHHcCC-CEEE---eec----hhhh---hhhhcccc------hhhHHHHH----HHHHhcC
Q 035561 490 GVLIVGERGTGKTSLALAIAAEARV-PVVN---VEA----QELE---AGLWVGQS------ASNVRELF----QTARDLA 548 (979)
Q Consensus 490 gVLL~GPPGTGKTtLArAlA~elg~-~~i~---Is~----sdL~---~~~~vG~~------~~~Ir~lF----~~A~~~a 548 (979)
.++|+||+|+|||++++.+++.+.. .+.. +++ .++. ... .|.. ...++.+. .......
T Consensus 45 ~~~l~G~~G~GKTtl~~~l~~~l~~~~~~~~~~~~~~~~~~~~l~~i~~~-lG~~~~~~~~~~~~~~l~~~l~~~~~~~~ 123 (269)
T TIGR03015 45 FILITGEVGAGKTTLIRNLLKRLDQERVVAAKLVNTRVDAEDLLRMVAAD-FGLETEGRDKAALLRELEDFLIEQFAAGK 123 (269)
T ss_pred EEEEEcCCCCCHHHHHHHHHHhcCCCCeEEeeeeCCCCCHHHHHHHHHHH-cCCCCCCCCHHHHHHHHHHHHHHHHhCCC
Confidence 4889999999999999999998752 2221 111 1111 011 1111 11112222 1223456
Q ss_pred CeEEEEcCccccccccccccCCCchhhHHHHHHHHhhhcccccCCeE--EEEecccchhhch----hhhhcCCceeeEec
Q 035561 549 PVIIFVEDFDLFAGVRGQFIHTKQQDHESFINQLLVELDGFEKQDGV--VLMATTRNIKQID----EALQRPGRMDRIFN 622 (979)
Q Consensus 549 P~ILfIDEIDaL~~~r~~~~~~~~~~~~~iln~LL~~LDg~~~~~~V--iVIATTN~pe~LD----pALlRpgRFd~~I~ 622 (979)
+.+|+|||++.+.. .....+..+..... .....+ ++++.++..+.+. ..+.+ |+...++
T Consensus 124 ~~vliiDe~~~l~~-----------~~~~~l~~l~~~~~--~~~~~~~vvl~g~~~~~~~l~~~~~~~l~~--r~~~~~~ 188 (269)
T TIGR03015 124 RALLVVDEAQNLTP-----------ELLEELRMLSNFQT--DNAKLLQIFLVGQPEFRETLQSPQLQQLRQ--RIIASCH 188 (269)
T ss_pred CeEEEEECcccCCH-----------HHHHHHHHHhCccc--CCCCeEEEEEcCCHHHHHHHcCchhHHHHh--heeeeee
Confidence 89999999997721 11122222221111 122223 3333332222221 23555 7888899
Q ss_pred cCCCCHHHHHHHHHHHHHhccc--hhhhhhhhHHHHHHHcCCCCHHHHHHHHHHHhhhhhc
Q 035561 623 LQKPTQSEREKILRIAAQETMD--EELIDLVDWRKVAEKTALLRPIELKLVPVALEGSAFR 681 (979)
Q Consensus 623 ~~~Pd~eeR~~IL~~~l~~~~~--~~l~~dvdL~~LA~~T~GfsgaDL~~Lv~aa~~aa~r 681 (979)
+++.+.++..+++...++.... ....+...++.|++.|.|... .|..+|..+...+..
T Consensus 189 l~~l~~~e~~~~l~~~l~~~g~~~~~~~~~~~~~~i~~~s~G~p~-~i~~l~~~~~~~a~~ 248 (269)
T TIGR03015 189 LGPLDREETREYIEHRLERAGNRDAPVFSEGAFDAIHRFSRGIPR-LINILCDRLLLSAFL 248 (269)
T ss_pred CCCCCHHHHHHHHHHHHHHcCCCCCCCcCHHHHHHHHHHcCCccc-HHHHHHHHHHHHHHH
Confidence 9999999999999998875421 122455678999999999764 599888776555433
No 186
>PF00158 Sigma54_activat: Sigma-54 interaction domain; InterPro: IPR002078 Some bacterial regulatory proteins activate the expression of genes from promoters recognised by core RNA polymerase associated with the alternative sigma-54 factor. These have a conserved domain of about 230 residues involved in the ATP-dependent [, ] interaction with sigma-54. About half of the proteins in which this domain is found (algB, dcdT, flbD, hoxA, hupR1, hydG, ntrC, pgtA and pilR) belong to signal transduction two-component systems [] and possess a domain that can be phosphorylated by a sensor-kinase protein in their N-terminal section. Almost all of these proteins possess a helix-turn-helix DNA-binding domain in their C-terminal section. The domain which interacts with the sigma-54 factor has an ATPase activity. This may be required to promote a conformational change necessary for the interaction []. The domain contains an atypical ATP-binding motif A (P-loop) as well as a form of motif B. The two ATP-binding motifs are located in the N-terminal section of the domain.; GO: 0005524 ATP binding, 0008134 transcription factor binding, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 1NY6_K 3M0E_G 1NY5_A 1OJL_A 3DZD_B 2C9C_A 2C98_A 2C96_A 2BJV_A 2C99_A ....
Probab=98.77 E-value=2.4e-08 Score=102.54 Aligned_cols=120 Identities=26% Similarity=0.369 Sum_probs=73.0
Q ss_pred ccCcHHHHHHHHHHHHhhcChhHHHhcCCCCCceeEecCCCCCChHHHHHHHHHHc---CCCEEEeechhhhhhh----h
Q 035561 457 FASVESMREEINEVVAFLQNPSAFQEMGARAPRGVLIVGERGTGKTSLALAIAAEA---RVPVVNVEAQELEAGL----W 529 (979)
Q Consensus 457 IvGleevke~L~eiV~~L~~p~~f~~lG~~~P~gVLL~GPPGTGKTtLArAlA~el---g~~~i~Is~sdL~~~~----~ 529 (979)
++|.....+.+.+.+..+ +..|..|||+|++||||+++|++|.+.. +.||+.++|+.+..+. .
T Consensus 1 liG~s~~m~~~~~~~~~~----------a~~~~pVlI~GE~GtGK~~lA~~IH~~s~r~~~pfi~vnc~~~~~~~~e~~L 70 (168)
T PF00158_consen 1 LIGESPAMKRLREQAKRA----------ASSDLPVLITGETGTGKELLARAIHNNSPRKNGPFISVNCAALPEELLESEL 70 (168)
T ss_dssp SS--SHHHHHHHHHHHHH----------TTSTS-EEEECSTTSSHHHHHHHHHHCSTTTTS-EEEEETTTS-HHHHHHHH
T ss_pred CEeCCHHHHHHHHHHHHH----------hCCCCCEEEEcCCCCcHHHHHHHHHHhhhcccCCeEEEehhhhhcchhhhhh
Confidence 456665555555444332 2345679999999999999999999976 4799999998764221 1
Q ss_pred cccch-------hhHHHHHHHHHhcCCeEEEEcCccccccccccccCCCchhhHHHHHHHHhhhcc--c---cc----CC
Q 035561 530 VGQSA-------SNVRELFQTARDLAPVIIFVEDFDLFAGVRGQFIHTKQQDHESFINQLLVELDG--F---EK----QD 593 (979)
Q Consensus 530 vG~~~-------~~Ir~lF~~A~~~aP~ILfIDEIDaL~~~r~~~~~~~~~~~~~iln~LL~~LDg--~---~~----~~ 593 (979)
.|... ..-..+|+.|.. ++||||||+.|.+ .+...|+..|+. + .. .-
T Consensus 71 FG~~~~~~~~~~~~~~G~l~~A~~---GtL~Ld~I~~L~~--------------~~Q~~Ll~~l~~~~~~~~g~~~~~~~ 133 (168)
T PF00158_consen 71 FGHEKGAFTGARSDKKGLLEQANG---GTLFLDEIEDLPP--------------ELQAKLLRVLEEGKFTRLGSDKPVPV 133 (168)
T ss_dssp HEBCSSSSTTTSSEBEHHHHHTTT---SEEEEETGGGS-H--------------HHHHHHHHHHHHSEEECCTSSSEEE-
T ss_pred hccccccccccccccCCceeeccc---eEEeecchhhhHH--------------HHHHHHHHHHhhchhccccccccccc
Confidence 22211 112367777765 9999999998832 233345555542 1 11 12
Q ss_pred eEEEEecccc
Q 035561 594 GVVLMATTRN 603 (979)
Q Consensus 594 ~ViVIATTN~ 603 (979)
.+.||+||+.
T Consensus 134 ~~RiI~st~~ 143 (168)
T PF00158_consen 134 DVRIIASTSK 143 (168)
T ss_dssp -EEEEEEESS
T ss_pred cceEEeecCc
Confidence 5788888875
No 187
>COG1221 PspF Transcriptional regulators containing an AAA-type ATPase domain and a DNA-binding domain [Transcription / Signal transduction mechanisms]
Probab=98.76 E-value=2.6e-08 Score=114.22 Aligned_cols=162 Identities=20% Similarity=0.253 Sum_probs=98.0
Q ss_pred CCCCCCcccCcHHHHHHHHHHHHhhcChhHHHhcCCCCCceeEecCCCCCChHHHHHHHHHHc----CCCEEEeechhhh
Q 035561 450 PPIPLKDFASVESMREEINEVVAFLQNPSAFQEMGARAPRGVLIVGERGTGKTSLALAIAAEA----RVPVVNVEAQELE 525 (979)
Q Consensus 450 ~~~~f~DIvGleevke~L~eiV~~L~~p~~f~~lG~~~P~gVLL~GPPGTGKTtLArAlA~el----g~~~i~Is~sdL~ 525 (979)
....+++++|....-+++++-+.. |. +...+||++|++||||+++|++|.... +.||+.+||..+.
T Consensus 73 ~~~~~~~LIG~~~~~~~~~eqik~------~a----p~~~~vLi~GetGtGKel~A~~iH~~s~r~~~~PFI~~NCa~~~ 142 (403)
T COG1221 73 KSEALDDLIGESPSLQELREQIKA------YA----PSGLPVLIIGETGTGKELFARLIHALSARRAEAPFIAFNCAAYS 142 (403)
T ss_pred cchhhhhhhccCHHHHHHHHHHHh------hC----CCCCcEEEecCCCccHHHHHHHHHHhhhcccCCCEEEEEHHHhC
Confidence 345689999999766666654433 22 233469999999999999999997543 5699999998875
Q ss_pred hhh------------hcccchhhHHHHHHHHHhcCCeEEEEcCccccccccccccCCCchhhHHHHHHHHhhhcc-----
Q 035561 526 AGL------------WVGQSASNVRELFQTARDLAPVIIFVEDFDLFAGVRGQFIHTKQQDHESFINQLLVELDG----- 588 (979)
Q Consensus 526 ~~~------------~vG~~~~~Ir~lF~~A~~~aP~ILfIDEIDaL~~~r~~~~~~~~~~~~~iln~LL~~LDg----- 588 (979)
.+. |.| ....-..+|+.|.. ++||+|||..+-+ .....|+..||.
T Consensus 143 en~~~~eLFG~~kGaftG-a~~~k~Glfe~A~G---GtLfLDEI~~LP~--------------~~Q~kLl~~le~g~~~r 204 (403)
T COG1221 143 ENLQEAELFGHEKGAFTG-AQGGKAGLFEQANG---GTLFLDEIHRLPP--------------EGQEKLLRVLEEGEYRR 204 (403)
T ss_pred cCHHHHHHhccccceeec-ccCCcCchheecCC---CEEehhhhhhCCH--------------hHHHHHHHHHHcCceEe
Confidence 332 223 22333455666644 8999999998732 222345555554
Q ss_pred cc----cCCeEEEEecccc--hhhchh--hhhcCCceeeEeccCCCCH--HHHHHHHHHHHH
Q 035561 589 FE----KQDGVVLMATTRN--IKQIDE--ALQRPGRMDRIFNLQKPTQ--SEREKILRIAAQ 640 (979)
Q Consensus 589 ~~----~~~~ViVIATTN~--pe~LDp--ALlRpgRFd~~I~~~~Pd~--eeR~~IL~~~l~ 640 (979)
+. ....|.+|+|||. .+.+-. .+.+. |+...|.+|+..+ +++..+++++++
T Consensus 205 vG~~~~~~~dVRli~AT~~~l~~~~~~g~dl~~r-l~~~~I~LPpLrER~~Di~~L~e~Fl~ 265 (403)
T COG1221 205 VGGSQPRPVDVRLICATTEDLEEAVLAGADLTRR-LNILTITLPPLRERKEDILLLAEHFLK 265 (403)
T ss_pred cCCCCCcCCCceeeeccccCHHHHHHhhcchhhh-hcCceecCCChhhchhhHHHHHHHHHH
Confidence 11 1234777777764 233333 34331 4545555555433 233344455544
No 188
>PF07726 AAA_3: ATPase family associated with various cellular activities (AAA); InterPro: IPR011703 This entry includes some of the AAA proteins not detected by the IPR003959 from INTERPRO model. AAA ATPases form a large, functionally diverse protein family belonging to the AAA+ superfamily of ring-shaped P-loop NTPases, which exert their activity through the energy-dependent unfolding of macromolecules. AAA ATPases contain a P-loop NTPase domain, which is the most abundant class of NTP-binding protein fold, and is found throughout all kingdoms of life []. P-loop NTPase domains act to hydrolyse the beta-gamma phosphate bond of bound nucleoside triphosphate. There are two classes of P-loop domains: the KG (kinase-GTPase) division, and the ASCE division, the latter including the AAA+ group as well as several other ATPases. There are at least six major clades of AAA domains (metalloproteases, meiotic proteins, D1 and D2 domains of ATPases with two AAA domains, proteasome subunits, and BSC1), as well as several minor clades, some of which consist of hypothetical proteins []. The domain organisation of AAA ATPases consists of a non-ATPase N-terminal domain that acts in substrate recognition, followed by one or two AAA domains (D1 and D2), one of which may be degenerate.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 2R44_A.
Probab=98.76 E-value=3.1e-09 Score=104.03 Aligned_cols=112 Identities=21% Similarity=0.288 Sum_probs=60.2
Q ss_pred eeEecCCCCCChHHHHHHHHHHcCCCEEEeech-hhhhhhhcccchhhHH-HHHHHHHh-cCCeEEEEcCcccccccccc
Q 035561 490 GVLIVGERGTGKTSLALAIAAEARVPVVNVEAQ-ELEAGLWVGQSASNVR-ELFQTARD-LAPVIIFVEDFDLFAGVRGQ 566 (979)
Q Consensus 490 gVLL~GPPGTGKTtLArAlA~elg~~~i~Is~s-dL~~~~~vG~~~~~Ir-~lF~~A~~-~aP~ILfIDEIDaL~~~r~~ 566 (979)
+|||.|+||+|||++|+++|+.++..|..|.+. ++..+...|..--.-. ..|+..+. --..|+++|||...
T Consensus 1 HvLleg~PG~GKT~la~~lA~~~~~~f~RIq~tpdllPsDi~G~~v~~~~~~~f~~~~GPif~~ill~DEiNra------ 74 (131)
T PF07726_consen 1 HVLLEGVPGVGKTTLAKALARSLGLSFKRIQFTPDLLPSDILGFPVYDQETGEFEFRPGPIFTNILLADEINRA------ 74 (131)
T ss_dssp -EEEES---HHHHHHHHHHHHHTT--EEEEE--TT--HHHHHEEEEEETTTTEEEEEE-TT-SSEEEEETGGGS------
T ss_pred CEeeECCCccHHHHHHHHHHHHcCCceeEEEecCCCCcccceeeeeeccCCCeeEeecChhhhceeeecccccC------
Confidence 589999999999999999999999999999874 5543322332110000 00100000 00269999999754
Q ss_pred ccCCCchhhHHHHHHHHhhhcc---------cccCCeEEEEecccchh-----hchhhhhcCCce
Q 035561 567 FIHTKQQDHESFINQLLVELDG---------FEKQDGVVLMATTRNIK-----QIDEALQRPGRM 617 (979)
Q Consensus 567 ~~~~~~~~~~~iln~LL~~LDg---------~~~~~~ViVIATTN~pe-----~LDpALlRpgRF 617 (979)
...+.+.||..|.. +.-.+.++||||-|..+ .|+.+++. ||
T Consensus 75 --------ppktQsAlLeam~Er~Vt~~g~~~~lp~pf~ViATqNp~e~~Gty~Lpea~~D--RF 129 (131)
T PF07726_consen 75 --------PPKTQSALLEAMEERQVTIDGQTYPLPDPFFVIATQNPVEQEGTYPLPEAQLD--RF 129 (131)
T ss_dssp ---------HHHHHHHHHHHHHSEEEETTEEEE--SS-EEEEEE-TT--S------HHHHT--TS
T ss_pred --------CHHHHHHHHHHHHcCeEEeCCEEEECCCcEEEEEecCccccCceecCCHHHhc--cc
Confidence 34455667766643 12235689999999866 68999988 87
No 189
>TIGR02031 BchD-ChlD magnesium chelatase ATPase subunit D. This model represents one of two ATPase subunits of the trimeric magnesium chelatase responsible for insertion of magnesium ion into protoporphyrin IX. This is an essential step in the biosynthesis of both chlorophyll and bacteriochlorophyll. This subunit is found in green plants, photosynthetic algae, cyanobacteria and other photosynthetic bacteria. Unlike subunit I (TIGR02030), this subunit is not found in archaea.
Probab=98.74 E-value=1.4e-07 Score=114.16 Aligned_cols=133 Identities=27% Similarity=0.348 Sum_probs=89.6
Q ss_pred ceeEecCCCCCChHHHHHHHHHHcC--CCEEEeechhhhhhhhcccchhhHHHHHHHH---------HhcCCeEEEEcCc
Q 035561 489 RGVLIVGERGTGKTSLALAIAAEAR--VPVVNVEAQELEAGLWVGQSASNVRELFQTA---------RDLAPVIIFVEDF 557 (979)
Q Consensus 489 ~gVLL~GPPGTGKTtLArAlA~elg--~~~i~Is~sdL~~~~~vG~~~~~Ir~lF~~A---------~~~aP~ILfIDEI 557 (979)
.||||.|+||||||++|+++++.++ .||+.+.++... ....|.. .+...+... .....++||||||
T Consensus 17 g~vLl~G~~GtgKs~lar~l~~~~~~~~pfv~i~~~~t~-d~L~G~i--dl~~~~~~g~~~~~~G~L~~A~~GvL~lDEi 93 (589)
T TIGR02031 17 GGVAIRARAGTGKTALARALAEILPPIMPFVELPLGVTE-DRLIGGI--DVEESLAGGQRVTQPGLLDEAPRGVLYVDMA 93 (589)
T ss_pred ceEEEEcCCCcHHHHHHHHHHHhCCcCCCeEecCcccch-hhcccch--hhhhhhhcCcccCCCCCeeeCCCCcEeccch
Confidence 4799999999999999999999875 468888863221 2222321 111101000 0123479999999
Q ss_pred cccccccccccCCCchhhHHHHHHHHhhhccc----c-------cCCeEEEEecccchh---hchhhhhcCCceeeEecc
Q 035561 558 DLFAGVRGQFIHTKQQDHESFINQLLVELDGF----E-------KQDGVVLMATTRNIK---QIDEALQRPGRMDRIFNL 623 (979)
Q Consensus 558 DaL~~~r~~~~~~~~~~~~~iln~LL~~LDg~----~-------~~~~ViVIATTN~pe---~LDpALlRpgRFd~~I~~ 623 (979)
+.+. ..+.+.|+..|+.- . ....+.||||+|..+ .++++|+. ||+..+.+
T Consensus 94 ~rl~--------------~~~q~~Ll~al~~g~v~i~r~G~~~~~p~~f~lIAt~np~e~~g~L~~~Lld--Rf~l~v~~ 157 (589)
T TIGR02031 94 NLLD--------------DGLSNRLLQALDEGVVIVEREGISVVHPAKFALIATYDPAEGGGGLPDHLLD--RLALHVSL 157 (589)
T ss_pred hhCC--------------HHHHHHHHHHHHcCCeEEEECCCceeecCceEEEEecCCccccCCCCHHHHH--hccCeeec
Confidence 9873 34455666666421 1 113578889999865 79999999 99988777
Q ss_pred CC-CCHHHHHHHHHHHHH
Q 035561 624 QK-PTQSEREKILRIAAQ 640 (979)
Q Consensus 624 ~~-Pd~eeR~~IL~~~l~ 640 (979)
.. |+.++|.+|++....
T Consensus 158 ~~~~~~~er~eil~~~~~ 175 (589)
T TIGR02031 158 EDVASQDLRVEIVRRERC 175 (589)
T ss_pred CCCCCHHHHHHHHHHHHH
Confidence 64 577889999998763
No 190
>COG1239 ChlI Mg-chelatase subunit ChlI [Coenzyme metabolism]
Probab=98.72 E-value=2.8e-07 Score=105.33 Aligned_cols=162 Identities=20% Similarity=0.319 Sum_probs=104.7
Q ss_pred CCCCCcccCcHHHHHHHHHHHHhhcChhHHHhcCCCCCceeEecCCCCCChHHHHHHHHHHcCCCEEEeec---------
Q 035561 451 PIPLKDFASVESMREEINEVVAFLQNPSAFQEMGARAPRGVLIVGERGTGKTSLALAIAAEARVPVVNVEA--------- 521 (979)
Q Consensus 451 ~~~f~DIvGleevke~L~eiV~~L~~p~~f~~lG~~~P~gVLL~GPPGTGKTtLArAlA~elg~~~i~Is~--------- 521 (979)
...|.-++|++..|..|--. --+ +.-.|+|+.|+.||||||++|++|.-+.---+.+.|
T Consensus 13 ~~pf~aivGqd~lk~aL~l~---av~---------P~iggvLI~G~kGtaKSt~~Rala~LLp~~~~V~gc~f~cdP~~P 80 (423)
T COG1239 13 NLPFTAIVGQDPLKLALGLN---AVD---------PQIGGALIAGEKGTAKSTLARALADLLPEIEVVIGCPFNCDPDDP 80 (423)
T ss_pred ccchhhhcCchHHHHHHhhh---hcc---------cccceeEEecCCCccHHHHHHHHHHhCCccceecCCCCCCCCCCh
Confidence 46789999999999987511 011 112589999999999999999999987421111122
Q ss_pred ----hhhhh------------------hhhcccchhhHH------HHHHH-HHhc--------CCeEEEEcCcccccccc
Q 035561 522 ----QELEA------------------GLWVGQSASNVR------ELFQT-ARDL--------APVIIFVEDFDLFAGVR 564 (979)
Q Consensus 522 ----sdL~~------------------~~~vG~~~~~Ir------~lF~~-A~~~--------aP~ILfIDEIDaL~~~r 564 (979)
..+.. +.-.|.++.++- ...+. -+.. ..+||++||+..|
T Consensus 81 ~~~c~~c~~k~~e~~~~~~~~r~v~~v~lPl~ateDrvvGslDi~ka~~~g~~af~PGlLa~AnRGIlYvDEvnlL---- 156 (423)
T COG1239 81 EEMCDECRAKGDELEWLPREKRKVPFVALPLGATEDRLVGSLDIEKALEEGPKAFQPGLLARANRGILYVDEVNLL---- 156 (423)
T ss_pred hhhhHHHHhhccccccccccceecceecCCCccchhhhccccCHHHHHhcCccccCCcchhhccCCEEEEeccccc----
Confidence 10000 001233333221 11110 0111 2379999999877
Q ss_pred ccccCCCchhhHHHHHHHHhhhcc---------c--ccCCeEEEEecccchh-hchhhhhcCCceeeEeccCCC-CHHHH
Q 035561 565 GQFIHTKQQDHESFINQLLVELDG---------F--EKQDGVVLMATTRNIK-QIDEALQRPGRMDRIFNLQKP-TQSER 631 (979)
Q Consensus 565 ~~~~~~~~~~~~~iln~LL~~LDg---------~--~~~~~ViVIATTN~pe-~LDpALlRpgRFd~~I~~~~P-d~eeR 631 (979)
..++.+.||..+.. + ...-.+++|||+|.-+ .|-|-|+. ||...+.+..| +.++|
T Consensus 157 ----------~d~lvd~LLd~aaeG~n~vereGisi~hpa~fvligTmNPEeGeLrpqLlD--Rfg~~v~~~~~~~~~~r 224 (423)
T COG1239 157 ----------DDHLVDALLDVAAEGVNDVEREGISIRHPARFLLIGTMNPEEGELRPQLLD--RFGLEVDTHYPLDLEER 224 (423)
T ss_pred ----------cHHHHHHHHHHHHhCCceeeeCceeeccCccEEEEeecCccccccchhhHh--hhcceeeccCCCCHHHH
Confidence 34567777766532 2 2234689999999854 78889999 99999999777 78889
Q ss_pred HHHHHHHHH
Q 035561 632 EKILRIAAQ 640 (979)
Q Consensus 632 ~~IL~~~l~ 640 (979)
.+|.+..+.
T Consensus 225 v~Ii~r~~~ 233 (423)
T COG1239 225 VEIIRRRLA 233 (423)
T ss_pred HHHHHHHHH
Confidence 999987765
No 191
>TIGR02974 phageshock_pspF psp operon transcriptional activator PspF. Members of this protein family are PspF, the sigma-54-dependent transcriptional activator of the phage shock protein (psp) operon, in Escherichia coli and numerous other species. The psp operon is induced by a number of stress conditions, including heat shock, ethanol, and filamentous phage infection. Changed com_name to adhere to TIGR role notes conventions. 09/15/06 - DMH
Probab=98.72 E-value=7.5e-08 Score=108.81 Aligned_cols=134 Identities=25% Similarity=0.292 Sum_probs=77.8
Q ss_pred CCceeEecCCCCCChHHHHHHHHHHc---CCCEEEeechhhhhhh----hcccch-------hhHHHHHHHHHhcCCeEE
Q 035561 487 APRGVLIVGERGTGKTSLALAIAAEA---RVPVVNVEAQELEAGL----WVGQSA-------SNVRELFQTARDLAPVII 552 (979)
Q Consensus 487 ~P~gVLL~GPPGTGKTtLArAlA~el---g~~~i~Is~sdL~~~~----~vG~~~-------~~Ir~lF~~A~~~aP~IL 552 (979)
....|||+|++||||+++|++|.... +.||+.++|..+..+. ..|... ..-...|+.| ..++|
T Consensus 21 ~~~pVLI~GE~GtGK~~lAr~iH~~s~r~~~pfv~vnc~~~~~~~l~~~lfG~~~g~~~ga~~~~~G~~~~a---~gGtL 97 (329)
T TIGR02974 21 LDRPVLIIGERGTGKELIAARLHYLSKRWQGPLVKLNCAALSENLLDSELFGHEAGAFTGAQKRHQGRFERA---DGGTL 97 (329)
T ss_pred CCCCEEEECCCCChHHHHHHHHHHhcCccCCCeEEEeCCCCChHHHHHHHhccccccccCcccccCCchhhC---CCCEE
Confidence 34569999999999999999998765 4799999998653211 111110 0111234444 35899
Q ss_pred EEcCccccccccccccCCCchhhHHHHHHHHhhhccc--c-------cCCeEEEEecccch-h------hchhhhhcCCc
Q 035561 553 FVEDFDLFAGVRGQFIHTKQQDHESFINQLLVELDGF--E-------KQDGVVLMATTRNI-K------QIDEALQRPGR 616 (979)
Q Consensus 553 fIDEIDaL~~~r~~~~~~~~~~~~~iln~LL~~LDg~--~-------~~~~ViVIATTN~p-e------~LDpALlRpgR 616 (979)
|||||+.|.. .....|+..++.- . ....+.+|+|||.. . .+.+.|.. |
T Consensus 98 ~Ldei~~L~~--------------~~Q~~Ll~~l~~~~~~~~g~~~~~~~~~RiI~at~~~l~~~~~~g~fr~dL~~--r 161 (329)
T TIGR02974 98 FLDELATASL--------------LVQEKLLRVIEYGEFERVGGSQTLQVDVRLVCATNADLPALAAEGRFRADLLD--R 161 (329)
T ss_pred EeCChHhCCH--------------HHHHHHHHHHHcCcEEecCCCceeccceEEEEechhhHHHHhhcCchHHHHHH--H
Confidence 9999998832 2233444444321 1 11346777777762 1 23455555 5
Q ss_pred eeeEeccCCCCHHHH----HHHHHHHHH
Q 035561 617 MDRIFNLQKPTQSER----EKILRIAAQ 640 (979)
Q Consensus 617 Fd~~I~~~~Pd~eeR----~~IL~~~l~ 640 (979)
|. .+.+..|...+| ..+++.++.
T Consensus 162 l~-~~~i~lPpLReR~eDI~~L~~~fl~ 188 (329)
T TIGR02974 162 LA-FDVITLPPLRERQEDIMLLAEHFAI 188 (329)
T ss_pred hc-chhcCCCchhhhhhhHHHHHHHHHH
Confidence 53 234555555555 344445444
No 192
>PRK06964 DNA polymerase III subunit delta'; Validated
Probab=98.71 E-value=7.9e-08 Score=109.00 Aligned_cols=135 Identities=19% Similarity=0.260 Sum_probs=97.6
Q ss_pred CCCCceeEecCCCCCChHHHHHHHHHHcCCCEE---Eeechh------hhhhh-----h---------------------
Q 035561 485 ARAPRGVLIVGERGTGKTSLALAIAAEARVPVV---NVEAQE------LEAGL-----W--------------------- 529 (979)
Q Consensus 485 ~~~P~gVLL~GPPGTGKTtLArAlA~elg~~~i---~Is~sd------L~~~~-----~--------------------- 529 (979)
.+.|.++||+||+|+||+++|+++|+.+.+.-- .-.|.. +..+. +
T Consensus 18 ~rl~ha~Lf~Gp~G~GK~~lA~~~A~~LlC~~~~~~~~~Cg~C~~C~~~~~~~HPD~~~i~p~~~~~~~~~~~~~~~~~~ 97 (342)
T PRK06964 18 ARLPHALLLHGQAGIGKLDFAQHLAQGLLCETPQPDGEPCGTCAACNWFAQGNHPDYRIVRPEALAAEAPGAADEAKEAD 97 (342)
T ss_pred CCcceEEEEECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCCHHHHHHHcCCCCCEEEEecccccccccccccccccch
Confidence 377889999999999999999999998854210 001110 00000 0
Q ss_pred ------------cccchhhHHHHHHHHHh----cCCeEEEEcCccccccccccccCCCchhhHHHHHHHHhhhcccccCC
Q 035561 530 ------------VGQSASNVRELFQTARD----LAPVIIFVEDFDLFAGVRGQFIHTKQQDHESFINQLLVELDGFEKQD 593 (979)
Q Consensus 530 ------------vG~~~~~Ir~lF~~A~~----~aP~ILfIDEIDaL~~~r~~~~~~~~~~~~~iln~LL~~LDg~~~~~ 593 (979)
...+...+|++.+.+.. ..-.|++||++|.+ .....|.||+.|+. ..+
T Consensus 98 ~~~~~~k~~~~~~~I~idqiR~l~~~~~~~~~~~~~kV~iI~~ae~m--------------~~~AaNaLLKtLEE--Pp~ 161 (342)
T PRK06964 98 ADEGGKKTKAPSKEIKIEQVRALLDFCGVGTHRGGARVVVLYPAEAL--------------NVAAANALLKTLEE--PPP 161 (342)
T ss_pred hhcccccccccccccCHHHHHHHHHHhccCCccCCceEEEEechhhc--------------CHHHHHHHHHHhcC--CCc
Confidence 01233567776665532 12369999999987 45677899999984 667
Q ss_pred eEEEEecccchhhchhhhhcCCceeeEeccCCCCHHHHHHHHHHH
Q 035561 594 GVVLMATTRNIKQIDEALQRPGRMDRIFNLQKPTQSEREKILRIA 638 (979)
Q Consensus 594 ~ViVIATTN~pe~LDpALlRpgRFd~~I~~~~Pd~eeR~~IL~~~ 638 (979)
++++|.+|++++.|.|.++| |. ..+.|++|+.++..+.|...
T Consensus 162 ~t~fiL~t~~~~~LLpTI~S--Rc-q~i~~~~~~~~~~~~~L~~~ 203 (342)
T PRK06964 162 GTVFLLVSARIDRLLPTILS--RC-RQFPMTVPAPEAAAAWLAAQ 203 (342)
T ss_pred CcEEEEEECChhhCcHHHHh--cC-EEEEecCCCHHHHHHHHHHc
Confidence 78889999999999999999 55 78999999999999888764
No 193
>PRK11608 pspF phage shock protein operon transcriptional activator; Provisional
Probab=98.71 E-value=8.9e-08 Score=108.04 Aligned_cols=96 Identities=24% Similarity=0.325 Sum_probs=65.2
Q ss_pred CCCcccCcHHHHHHHHHHHHhhcChhHHHhcCCCCCceeEecCCCCCChHHHHHHHHHHc---CCCEEEeechhhhhhh-
Q 035561 453 PLKDFASVESMREEINEVVAFLQNPSAFQEMGARAPRGVLIVGERGTGKTSLALAIAAEA---RVPVVNVEAQELEAGL- 528 (979)
Q Consensus 453 ~f~DIvGleevke~L~eiV~~L~~p~~f~~lG~~~P~gVLL~GPPGTGKTtLArAlA~el---g~~~i~Is~sdL~~~~- 528 (979)
.+++++|.....+.+.+.+..+. +.+..|||+|++||||+++|+++.... +.||+.++|..+..+.
T Consensus 4 ~~~~liG~S~~~~~~~~~i~~~a----------~~~~pVlI~GE~GtGK~~lA~~iH~~s~r~~~pfv~v~c~~~~~~~~ 73 (326)
T PRK11608 4 YKDNLLGEANSFLEVLEQVSRLA----------PLDKPVLIIGERGTGKELIASRLHYLSSRWQGPFISLNCAALNENLL 73 (326)
T ss_pred ccCccEECCHHHHHHHHHHHHHh----------CCCCCEEEECCCCCcHHHHHHHHHHhCCccCCCeEEEeCCCCCHHHH
Confidence 36789999887777776554431 334569999999999999999998765 4699999998763221
Q ss_pred ---hcccch-------hhHHHHHHHHHhcCCeEEEEcCccccc
Q 035561 529 ---WVGQSA-------SNVRELFQTARDLAPVIIFVEDFDLFA 561 (979)
Q Consensus 529 ---~vG~~~-------~~Ir~lF~~A~~~aP~ILfIDEIDaL~ 561 (979)
..|... ......|..| ..+.|||||+|.|.
T Consensus 74 ~~~lfg~~~~~~~g~~~~~~g~l~~a---~gGtL~l~~i~~L~ 113 (326)
T PRK11608 74 DSELFGHEAGAFTGAQKRHPGRFERA---DGGTLFLDELATAP 113 (326)
T ss_pred HHHHccccccccCCcccccCCchhcc---CCCeEEeCChhhCC
Confidence 111110 0112234333 35899999999883
No 194
>PRK11388 DNA-binding transcriptional regulator DhaR; Provisional
Probab=98.71 E-value=6e-08 Score=118.52 Aligned_cols=98 Identities=21% Similarity=0.284 Sum_probs=65.4
Q ss_pred CCCCCcccCcHHHHHHHHHHHHhhcChhHHHhcCCCCCceeEecCCCCCChHHHHHHHHHHc---CCCEEEeechhhhhh
Q 035561 451 PIPLKDFASVESMREEINEVVAFLQNPSAFQEMGARAPRGVLIVGERGTGKTSLALAIAAEA---RVPVVNVEAQELEAG 527 (979)
Q Consensus 451 ~~~f~DIvGleevke~L~eiV~~L~~p~~f~~lG~~~P~gVLL~GPPGTGKTtLArAlA~el---g~~~i~Is~sdL~~~ 527 (979)
..+|++++|.....+.+.+.+..+ +..+..|||+|++||||+++|+++.... +.||+.+||..+..+
T Consensus 321 ~~~~~~l~g~s~~~~~~~~~~~~~----------a~~~~pvli~Ge~GtGK~~~A~~ih~~s~r~~~pfv~vnc~~~~~~ 390 (638)
T PRK11388 321 SHTFDHMPQDSPQMRRLIHFGRQA----------AKSSFPVLLCGEEGVGKALLAQAIHNESERAAGPYIAVNCQLYPDE 390 (638)
T ss_pred cccccceEECCHHHHHHHHHHHHH----------hCcCCCEEEECCCCcCHHHHHHHHHHhCCccCCCeEEEECCCCChH
Confidence 346999999987766666544332 1233459999999999999999999875 479999999776311
Q ss_pred ----hhcccc----hhhHHHHHHHHHhcCCeEEEEcCccccc
Q 035561 528 ----LWVGQS----ASNVRELFQTARDLAPVIIFVEDFDLFA 561 (979)
Q Consensus 528 ----~~vG~~----~~~Ir~lF~~A~~~aP~ILfIDEIDaL~ 561 (979)
...|.. .......|+.| .++.||||||+.+.
T Consensus 391 ~~~~elfg~~~~~~~~~~~g~~~~a---~~GtL~ldei~~l~ 429 (638)
T PRK11388 391 ALAEEFLGSDRTDSENGRLSKFELA---HGGTLFLEKVEYLS 429 (638)
T ss_pred HHHHHhcCCCCcCccCCCCCceeEC---CCCEEEEcChhhCC
Confidence 112211 11111123333 45899999999883
No 195
>KOG0990 consensus Replication factor C, subunit RFC5 [Replication, recombination and repair]
Probab=98.70 E-value=3.9e-08 Score=108.29 Aligned_cols=197 Identities=16% Similarity=0.179 Sum_probs=125.6
Q ss_pred cccCCCCCCCCcccCcHHHHHHHHHHHHhhcChhHHHhcCCCCCceeEecCCCCCChHHHHHHHHHHcCCC------EEE
Q 035561 445 KRVKNPPIPLKDFASVESMREEINEVVAFLQNPSAFQEMGARAPRGVLIVGERGTGKTSLALAIAAEARVP------VVN 518 (979)
Q Consensus 445 ~~v~~~~~~f~DIvGleevke~L~eiV~~L~~p~~f~~lG~~~P~gVLL~GPPGTGKTtLArAlA~elg~~------~i~ 518 (979)
+..++++-.++|+++.+++...+.+..+.- +.| +.|+|||||||||+...+.|..+..| +..
T Consensus 31 wvekyrP~~l~dv~~~~ei~st~~~~~~~~-----------~lP-h~L~YgPPGtGktsti~a~a~~ly~~~~~~~m~le 98 (360)
T KOG0990|consen 31 WVEKYRPPFLGIVIKQEPIWSTENRYSGMP-----------GLP-HLLFYGPPGTGKTSTILANARDFYSPHPTTSMLLE 98 (360)
T ss_pred CccCCCCchhhhHhcCCchhhHHHHhccCC-----------CCC-cccccCCCCCCCCCchhhhhhhhcCCCCchhHHHH
Confidence 445778889999999999888887653221 222 79999999999999999999988664 122
Q ss_pred eechhhhhhhhcccchhhHHHHHHHHHh-------cCCeEEEEcCccccccccccccCCCchhhHHHHHHHHhhhccccc
Q 035561 519 VEAQELEAGLWVGQSASNVRELFQTARD-------LAPVIIFVEDFDLFAGVRGQFIHTKQQDHESFINQLLVELDGFEK 591 (979)
Q Consensus 519 Is~sdL~~~~~vG~~~~~Ir~lF~~A~~-------~aP~ILfIDEIDaL~~~r~~~~~~~~~~~~~iln~LL~~LDg~~~ 591 (979)
.+.|+ +.-.+.....+ ..|..++. ..+..+++||.|+... ..-|+|-..++.+..
T Consensus 99 lnaSd---~rgid~vr~qi-~~fast~~~~~fst~~~fKlvILDEADaMT~--------------~AQnALRRviek~t~ 160 (360)
T KOG0990|consen 99 LNASD---DRGIDPVRQQI-HLFASTQQPTTYSTHAAFKLVILDEADAMTR--------------DAQNALRRVIEKYTA 160 (360)
T ss_pred hhccC---ccCCcchHHHH-HHHHhhccceeccccCceeEEEecchhHhhH--------------HHHHHHHHHHHHhcc
Confidence 22322 11112222222 24555542 2678999999998742 233344445665555
Q ss_pred CCeEEEEecccchhhchhhhhcCCceeeEeccCCCCHHHHHHHHHHHHHhccchhhhhhhhHHHHHHHcCCCCHHHHHHH
Q 035561 592 QDGVVLMATTRNIKQIDEALQRPGRMDRIFNLQKPTQSEREKILRIAAQETMDEELIDLVDWRKVAEKTALLRPIELKLV 671 (979)
Q Consensus 592 ~~~ViVIATTN~pe~LDpALlRpgRFd~~I~~~~Pd~eeR~~IL~~~l~~~~~~~l~~dvdL~~LA~~T~GfsgaDL~~L 671 (979)
+..++ ..+|.+..+.|++++ ||. .+.|.+.+.+.-...+.+++..... .....-...+++.. -+|+...
T Consensus 161 n~rF~--ii~n~~~ki~pa~qs--Rct-rfrf~pl~~~~~~~r~shi~e~e~~--~~~~~~~~a~~r~s----~gDmr~a 229 (360)
T KOG0990|consen 161 NTRFA--TISNPPQKIHPAQQS--RCT-RFRFAPLTMAQQTERQSHIRESEQK--ETNPEGYSALGRLS----VGDMRVA 229 (360)
T ss_pred ceEEE--EeccChhhcCchhhc--ccc-cCCCCCCChhhhhhHHHHHHhcchh--hcCHHHHHHHHHHh----HHHHHHH
Confidence 44444 558999999999998 664 6688888888888888888875421 11122233344433 3477766
Q ss_pred HHHHhhhhhcc
Q 035561 672 PVALEGSAFRS 682 (979)
Q Consensus 672 v~aa~~aa~r~ 682 (979)
.+.++..+...
T Consensus 230 ~n~Lqs~~~~~ 240 (360)
T KOG0990|consen 230 LNYLQSILKKV 240 (360)
T ss_pred HHHHHHHHHHh
Confidence 66666554443
No 196
>PF13177 DNA_pol3_delta2: DNA polymerase III, delta subunit; PDB: 1NJF_B 3GLG_G 1XXH_I 1NJG_A 3GLF_B 3GLI_G 1IQP_E 2GNO_A 1SXJ_E 1A5T_A ....
Probab=98.69 E-value=1e-07 Score=97.20 Aligned_cols=134 Identities=19% Similarity=0.288 Sum_probs=87.5
Q ss_pred CcHHHHHHHHHHHHhhcChhHHHhcCCCCCceeEecCCCCCChHHHHHHHHHHcCC-----------------------C
Q 035561 459 SVESMREEINEVVAFLQNPSAFQEMGARAPRGVLIVGERGTGKTSLALAIAAEARV-----------------------P 515 (979)
Q Consensus 459 Gleevke~L~eiV~~L~~p~~f~~lG~~~P~gVLL~GPPGTGKTtLArAlA~elg~-----------------------~ 515 (979)
|++++.+.|...+. .-+.|..+||+||+|+||+++|+++|+.+-. .
T Consensus 1 gq~~~~~~L~~~~~-----------~~~l~ha~L~~G~~g~gk~~~a~~~a~~ll~~~~~~~~c~~c~~c~~~~~~~~~d 69 (162)
T PF13177_consen 1 GQEEIIELLKNLIK-----------SGRLPHALLFHGPSGSGKKTLALAFARALLCSNPNEDPCGECRSCRRIEEGNHPD 69 (162)
T ss_dssp S-HHHHHHHHHHHH-----------CTC--SEEEEECSTTSSHHHHHHHHHHHHC-TT-CTT--SSSHHHHHHHTT-CTT
T ss_pred CcHHHHHHHHHHHH-----------cCCcceeEEEECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCHHHHHHHhccCcc
Confidence 67777777775552 2355678999999999999999999998732 1
Q ss_pred EEEeechhhhhhhhcccchhhHHHHHHHHHh----cCCeEEEEcCccccccccccccCCCchhhHHHHHHHHhhhccccc
Q 035561 516 VVNVEAQELEAGLWVGQSASNVRELFQTARD----LAPVIIFVEDFDLFAGVRGQFIHTKQQDHESFINQLLVELDGFEK 591 (979)
Q Consensus 516 ~i~Is~sdL~~~~~vG~~~~~Ir~lF~~A~~----~aP~ILfIDEIDaL~~~r~~~~~~~~~~~~~iln~LL~~LDg~~~ 591 (979)
++.++...- ...-....+|++.+.+.. ...-|++|||+|.+ .....|.||+.|+..
T Consensus 70 ~~~~~~~~~----~~~i~i~~ir~i~~~~~~~~~~~~~KviiI~~ad~l--------------~~~a~NaLLK~LEep-- 129 (162)
T PF13177_consen 70 FIIIKPDKK----KKSIKIDQIREIIEFLSLSPSEGKYKVIIIDEADKL--------------TEEAQNALLKTLEEP-- 129 (162)
T ss_dssp EEEEETTTS----SSSBSHHHHHHHHHHCTSS-TTSSSEEEEEETGGGS---------------HHHHHHHHHHHHST--
T ss_pred eEEEecccc----cchhhHHHHHHHHHHHHHHHhcCCceEEEeehHhhh--------------hHHHHHHHHHHhcCC--
Confidence 222222111 001234667776666543 23579999999987 456788999999864
Q ss_pred CCeEEEEecccchhhchhhhhcCCceeeEeccCCC
Q 035561 592 QDGVVLMATTRNIKQIDEALQRPGRMDRIFNLQKP 626 (979)
Q Consensus 592 ~~~ViVIATTN~pe~LDpALlRpgRFd~~I~~~~P 626 (979)
..++.+|.+|++++.|.|.++++ . ..+.|++.
T Consensus 130 p~~~~fiL~t~~~~~il~TI~SR--c-~~i~~~~l 161 (162)
T PF13177_consen 130 PENTYFILITNNPSKILPTIRSR--C-QVIRFRPL 161 (162)
T ss_dssp TTTEEEEEEES-GGGS-HHHHTT--S-EEEEE---
T ss_pred CCCEEEEEEECChHHChHHHHhh--c-eEEecCCC
Confidence 45678888889999999999994 4 56666554
No 197
>TIGR01817 nifA Nif-specific regulatory protein. This model represents NifA, a DNA-binding regulatory protein for nitrogen fixation. The model produces scores between the trusted and noise cutoffs for a well-described NifA homolog in Aquifex aeolicus (which lacks nitrogenase), for transcriptional activators of alternative nitrogenases (VFe or FeFe instead of MoFe), and truncated forms.
Probab=98.68 E-value=6.9e-08 Score=115.65 Aligned_cols=100 Identities=21% Similarity=0.301 Sum_probs=68.4
Q ss_pred CCCCCCCcccCcHHHHHHHHHHHHhhcChhHHHhcCCCCCceeEecCCCCCChHHHHHHHHHHc---CCCEEEeechhhh
Q 035561 449 NPPIPLKDFASVESMREEINEVVAFLQNPSAFQEMGARAPRGVLIVGERGTGKTSLALAIAAEA---RVPVVNVEAQELE 525 (979)
Q Consensus 449 ~~~~~f~DIvGleevke~L~eiV~~L~~p~~f~~lG~~~P~gVLL~GPPGTGKTtLArAlA~el---g~~~i~Is~sdL~ 525 (979)
.+..++++++|.....+.+.+.+..+. .....|||+|++|||||++|++|.... +.||+.++|..+.
T Consensus 190 ~~~~~~~~liG~s~~~~~~~~~~~~~a----------~~~~pvli~Ge~GtGK~~lA~~ih~~s~r~~~pfv~i~c~~~~ 259 (534)
T TIGR01817 190 RRSGKEDGIIGKSPAMRQVVDQARVVA----------RSNSTVLLRGESGTGKELIAKAIHYLSPRAKRPFVKVNCAALS 259 (534)
T ss_pred cccCccCceEECCHHHHHHHHHHHHHh----------CcCCCEEEECCCCccHHHHHHHHHHhCCCCCCCeEEeecCCCC
Confidence 345689999999988777776654432 234569999999999999999999875 5799999998763
Q ss_pred hhh----hcccchh-------hHHHHHHHHHhcCCeEEEEcCccccc
Q 035561 526 AGL----WVGQSAS-------NVRELFQTARDLAPVIIFVEDFDLFA 561 (979)
Q Consensus 526 ~~~----~vG~~~~-------~Ir~lF~~A~~~aP~ILfIDEIDaL~ 561 (979)
... ..|.... .-...|..| .+++|||||||.|.
T Consensus 260 ~~~~~~~lfg~~~~~~~~~~~~~~g~~~~a---~~GtL~ldei~~L~ 303 (534)
T TIGR01817 260 ETLLESELFGHEKGAFTGAIAQRKGRFELA---DGGTLFLDEIGEIS 303 (534)
T ss_pred HHHHHHHHcCCCCCccCCCCcCCCCccccc---CCCeEEEechhhCC
Confidence 211 0111100 001123333 35899999999883
No 198
>PRK09862 putative ATP-dependent protease; Provisional
Probab=98.66 E-value=2.5e-07 Score=109.67 Aligned_cols=144 Identities=18% Similarity=0.250 Sum_probs=88.2
Q ss_pred CCCcccCcHHHHHHHHHHHHhhcChhHHHhcCCCCCceeEecCCCCCChHHHHHHHHHHcCC----------CEEEeech
Q 035561 453 PLKDFASVESMREEINEVVAFLQNPSAFQEMGARAPRGVLIVGERGTGKTSLALAIAAEARV----------PVVNVEAQ 522 (979)
Q Consensus 453 ~f~DIvGleevke~L~eiV~~L~~p~~f~~lG~~~P~gVLL~GPPGTGKTtLArAlA~elg~----------~~i~Is~s 522 (979)
.|.++.|...+++.+. +.+....+++|+||||||||++++.+++.+.- .++++.+.
T Consensus 189 d~~~v~Gq~~~~~al~--------------laa~~G~~llliG~~GsGKTtLak~L~gllpp~~g~e~le~~~i~s~~g~ 254 (506)
T PRK09862 189 DLSDVIGQEQGKRGLE--------------ITAAGGHNLLLIGPPGTGKTMLASRINGLLPDLSNEEALESAAILSLVNA 254 (506)
T ss_pred CeEEEECcHHHHhhhh--------------eeccCCcEEEEECCCCCcHHHHHHHHhccCCCCCCcEEEecchhhhhhcc
Confidence 6778888876666543 12233467999999999999999999986521 11111110
Q ss_pred -----hhhh------------hhhcccchhhHHHHHHHHHhcCCeEEEEcCccccccccccccCCCchhhHHHHHHHHhh
Q 035561 523 -----ELEA------------GLWVGQSASNVRELFQTARDLAPVIIFVEDFDLFAGVRGQFIHTKQQDHESFINQLLVE 585 (979)
Q Consensus 523 -----dL~~------------~~~vG~~~~~Ir~lF~~A~~~aP~ILfIDEIDaL~~~r~~~~~~~~~~~~~iln~LL~~ 585 (979)
.+.. ...+|.+...-...+..|. .++|||||++.+. ..+++.|+..
T Consensus 255 ~~~~~~~~~rPfr~ph~~~s~~~l~GGg~~~~pG~l~~A~---gGvLfLDEi~e~~--------------~~~~~~L~~~ 317 (506)
T PRK09862 255 ESVQKQWRQRPFRSPHHSASLTAMVGGGAIPGPGEISLAH---NGVLFLDELPEFE--------------RRTLDALREP 317 (506)
T ss_pred ccccCCcCCCCccCCCccchHHHHhCCCceehhhHhhhcc---CCEEecCCchhCC--------------HHHHHHHHHH
Confidence 0000 0012222111123344443 4899999998662 2445555555
Q ss_pred hccc-----------ccCCeEEEEecccchh---------------------hchhhhhcCCceeeEeccCCCCHH
Q 035561 586 LDGF-----------EKQDGVVLMATTRNIK---------------------QIDEALQRPGRMDRIFNLQKPTQS 629 (979)
Q Consensus 586 LDg~-----------~~~~~ViVIATTN~pe---------------------~LDpALlRpgRFd~~I~~~~Pd~e 629 (979)
|+.- ....++.+|||+|... .|+.+++. |||..+.++.|+.+
T Consensus 318 LE~g~v~I~r~g~~~~~pa~f~lIAa~NP~pcG~~~~~~c~c~~~~~~~Y~~~ls~plLD--RfdL~v~v~~~~~~ 391 (506)
T PRK09862 318 IESGQIHLSRTRAKITYPARFQLVAAMNPSPTGHYQGNHNRCTPEQTLRYLNRLSGPFLD--RFDLSLEIPLPPPG 391 (506)
T ss_pred HHcCcEEEecCCcceeccCCEEEEEeecCccceecCCCCCCcCHHHHHHHHhhCCHhHHh--hccEEEEeCCCCHH
Confidence 5321 1124589999999842 47789999 99999999999866
No 199
>PRK15424 propionate catabolism operon regulatory protein PrpR; Provisional
Probab=98.66 E-value=4.2e-08 Score=117.14 Aligned_cols=97 Identities=28% Similarity=0.405 Sum_probs=68.3
Q ss_pred CCCCcccCcHHHHHHHHHHHHhhcChhHHHhcCCCCCceeEecCCCCCChHHHHHHHHHH-----------cCCCEEEee
Q 035561 452 IPLKDFASVESMREEINEVVAFLQNPSAFQEMGARAPRGVLIVGERGTGKTSLALAIAAE-----------ARVPVVNVE 520 (979)
Q Consensus 452 ~~f~DIvGleevke~L~eiV~~L~~p~~f~~lG~~~P~gVLL~GPPGTGKTtLArAlA~e-----------lg~~~i~Is 520 (979)
.+|++++|.....+.+.+.+..+ .+.+..|||+|++||||+++|++|... .+.||+.+|
T Consensus 216 ~~f~~iiG~S~~m~~~~~~i~~~----------A~s~~pVLI~GE~GTGKe~~A~~IH~~~~~~~~~~S~r~~~pfv~in 285 (538)
T PRK15424 216 YVLGDLLGQSPQMEQVRQTILLY----------ARSSAAVLIQGETGTGKELAAQAIHREYFARHDARQGKKSHPFVAVN 285 (538)
T ss_pred cchhheeeCCHHHHHHHHHHHHH----------hCCCCcEEEECCCCCCHHHHHHHHHHhhcccccccCccCCCCeEEee
Confidence 46999999998888877665432 123456999999999999999999887 457999999
Q ss_pred chhhhhhh----hcccc--------hhhHHHHHHHHHhcCCeEEEEcCccccc
Q 035561 521 AQELEAGL----WVGQS--------ASNVRELFQTARDLAPVIIFVEDFDLFA 561 (979)
Q Consensus 521 ~sdL~~~~----~vG~~--------~~~Ir~lF~~A~~~aP~ILfIDEIDaL~ 561 (979)
|..+..+. ..|.. ...-..+|+.|. .+.||||||+.|.
T Consensus 286 Caal~e~lleseLFG~~~gaftga~~~~~~Gl~e~A~---gGTLfLdeI~~Lp 335 (538)
T PRK15424 286 CGAIAESLLEAELFGYEEGAFTGSRRGGRAGLFEIAH---GGTLFLDEIGEMP 335 (538)
T ss_pred cccCChhhHHHHhcCCccccccCccccccCCchhccC---CCEEEEcChHhCC
Confidence 98763221 11111 011123555553 4899999999883
No 200
>PRK15429 formate hydrogenlyase transcriptional activator FhlA; Provisional
Probab=98.66 E-value=2.3e-07 Score=114.38 Aligned_cols=157 Identities=24% Similarity=0.325 Sum_probs=94.1
Q ss_pred CCCCCCcccCcHHHHHHHHHHHHhhcChhHHHhcCCCCCceeEecCCCCCChHHHHHHHHHHc---CCCEEEeechhhhh
Q 035561 450 PPIPLKDFASVESMREEINEVVAFLQNPSAFQEMGARAPRGVLIVGERGTGKTSLALAIAAEA---RVPVVNVEAQELEA 526 (979)
Q Consensus 450 ~~~~f~DIvGleevke~L~eiV~~L~~p~~f~~lG~~~P~gVLL~GPPGTGKTtLArAlA~el---g~~~i~Is~sdL~~ 526 (979)
.+..|++++|.....+.+.+-+..+. ..+.+|||+|++|||||++|++|.... +.||+.++|..+..
T Consensus 371 ~n~~~~~liG~S~~~~~~~~~~~~~a----------~~~~pVLI~GE~GTGK~~lA~~ih~~s~r~~~~~v~i~c~~~~~ 440 (686)
T PRK15429 371 VDSEFGEIIGRSEAMYSVLKQVEMVA----------QSDSTVLILGETGTGKELIARAIHNLSGRNNRRMVKMNCAAMPA 440 (686)
T ss_pred ccccccceeecCHHHHHHHHHHHHHh----------CCCCCEEEECCCCcCHHHHHHHHHHhcCCCCCCeEEEecccCCh
Confidence 34578999999988887776555431 234569999999999999999998865 57999999987632
Q ss_pred hh----hcccc-------hhhHHHHHHHHHhcCCeEEEEcCccccccccccccCCCchhhHHHHHHHHhhhcc--cc---
Q 035561 527 GL----WVGQS-------ASNVRELFQTARDLAPVIIFVEDFDLFAGVRGQFIHTKQQDHESFINQLLVELDG--FE--- 590 (979)
Q Consensus 527 ~~----~vG~~-------~~~Ir~lF~~A~~~aP~ILfIDEIDaL~~~r~~~~~~~~~~~~~iln~LL~~LDg--~~--- 590 (979)
+. ..|.. .......|+.| .+++||||||+.+.. .....|+..++. +.
T Consensus 441 ~~~~~~lfg~~~~~~~g~~~~~~g~le~a---~~GtL~Ldei~~L~~--------------~~Q~~L~~~l~~~~~~~~g 503 (686)
T PRK15429 441 GLLESDLFGHERGAFTGASAQRIGRFELA---DKSSLFLDEVGDMPL--------------ELQPKLLRVLQEQEFERLG 503 (686)
T ss_pred hHhhhhhcCcccccccccccchhhHHHhc---CCCeEEEechhhCCH--------------HHHHHHHHHHHhCCEEeCC
Confidence 11 11110 01112344444 358999999998832 223344444432 11
Q ss_pred c----CCeEEEEecccch-h-hchhhhhcCCceee--EeccCCCCHHHHHH
Q 035561 591 K----QDGVVLMATTRNI-K-QIDEALQRPGRMDR--IFNLQKPTQSEREK 633 (979)
Q Consensus 591 ~----~~~ViVIATTN~p-e-~LDpALlRpgRFd~--~I~~~~Pd~eeR~~ 633 (979)
. ..++.+|+||+.. . .+....+++..|.+ .+.+..|...+|.+
T Consensus 504 ~~~~~~~~~RiI~~t~~~l~~~~~~~~f~~~L~~~l~~~~i~lPpLreR~~ 554 (686)
T PRK15429 504 SNKIIQTDVRLIAATNRDLKKMVADREFRSDLYYRLNVFPIHLPPLRERPE 554 (686)
T ss_pred CCCcccceEEEEEeCCCCHHHHHHcCcccHHHHhccCeeEEeCCChhhhHh
Confidence 1 1346778887762 2 22322222211211 45566777777654
No 201
>TIGR02329 propionate_PrpR propionate catabolism operon regulatory protein PrpR. At least five distinct pathways exists for the catabolism of propionate by way of propionyl-CoA. Members of this family represent the transcriptional regulatory protein PrpR, whose gene is found in most cases divergently transcribed from an operon for the methylcitric acid cycle of propionate catabolism. 2-methylcitric acid, a catabolite by this pathway, is a coactivator of PrpR.
Probab=98.65 E-value=1.2e-07 Score=113.31 Aligned_cols=97 Identities=26% Similarity=0.409 Sum_probs=68.2
Q ss_pred CCCCcccCcHHHHHHHHHHHHhhcChhHHHhcCCCCCceeEecCCCCCChHHHHHHHHHHc---CCCEEEeechhhhhhh
Q 035561 452 IPLKDFASVESMREEINEVVAFLQNPSAFQEMGARAPRGVLIVGERGTGKTSLALAIAAEA---RVPVVNVEAQELEAGL 528 (979)
Q Consensus 452 ~~f~DIvGleevke~L~eiV~~L~~p~~f~~lG~~~P~gVLL~GPPGTGKTtLArAlA~el---g~~~i~Is~sdL~~~~ 528 (979)
.+|++++|.....+.+.+.+..+ .+.+..|||+|++||||+++|+++.... +.||+.++|..+....
T Consensus 209 ~~f~~iiG~S~~m~~~~~~i~~~----------A~~~~pVLI~GE~GTGKe~lA~~IH~~S~r~~~pfv~inC~~l~e~l 278 (526)
T TIGR02329 209 YRLDDLLGASAPMEQVRALVRLY----------ARSDATVLILGESGTGKELVAQAIHQLSGRRDFPFVAINCGAIAESL 278 (526)
T ss_pred cchhheeeCCHHHHHHHHHHHHH----------hCCCCcEEEECCCCcCHHHHHHHHHHhcCcCCCCEEEeccccCChhH
Confidence 67999999998888777665433 1234569999999999999999998764 5799999998663211
Q ss_pred ----hccc--------chhhHHHHHHHHHhcCCeEEEEcCccccc
Q 035561 529 ----WVGQ--------SASNVRELFQTARDLAPVIIFVEDFDLFA 561 (979)
Q Consensus 529 ----~vG~--------~~~~Ir~lF~~A~~~aP~ILfIDEIDaL~ 561 (979)
..|. ....-..+|+.|. .+.||||||+.|.
T Consensus 279 leseLFG~~~gaftga~~~~~~Gl~e~A~---gGTLfLdeI~~Lp 320 (526)
T TIGR02329 279 LEAELFGYEEGAFTGARRGGRTGLIEAAH---RGTLFLDEIGEMP 320 (526)
T ss_pred HHHHhcCCcccccccccccccccchhhcC---CceEEecChHhCC
Confidence 1111 1011223455553 4899999999883
No 202
>COG2204 AtoC Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains [Signal transduction mechanisms]
Probab=98.64 E-value=9.5e-08 Score=111.39 Aligned_cols=155 Identities=20% Similarity=0.276 Sum_probs=101.1
Q ss_pred CCCCCcccCcHHHHHHHHHHHHhhcChhHHHhcCCCCCceeEecCCCCCChHHHHHHHHHHcC---CCEEEeechhhhhh
Q 035561 451 PIPLKDFASVESMREEINEVVAFLQNPSAFQEMGARAPRGVLIVGERGTGKTSLALAIAAEAR---VPVVNVEAQELEAG 527 (979)
Q Consensus 451 ~~~f~DIvGleevke~L~eiV~~L~~p~~f~~lG~~~P~gVLL~GPPGTGKTtLArAlA~elg---~~~i~Is~sdL~~~ 527 (979)
.....+++|.....+.|.+.+..+. +....||++|++||||.++|++|..... .||+.+||..+..+
T Consensus 137 ~~~~~~liG~S~am~~l~~~i~kvA----------~s~a~VLI~GESGtGKElvAr~IH~~S~R~~~PFVavNcaAip~~ 206 (464)
T COG2204 137 KSLGGELVGESPAMQQLRRLIAKVA----------PSDASVLITGESGTGKELVARAIHQASPRAKGPFIAVNCAAIPEN 206 (464)
T ss_pred ccccCCceecCHHHHHHHHHHHHHh----------CCCCCEEEECCCCCcHHHHHHHHHhhCcccCCCceeeecccCCHH
Confidence 3467899999999999988876542 2345699999999999999999998774 59999999765322
Q ss_pred h------------hcccchhhHHHHHHHHHhcCCeEEEEcCccccccccccccCCCchhhHHHHHHHHhhhcc-----cc
Q 035561 528 L------------WVGQSASNVRELFQTARDLAPVIIFVEDFDLFAGVRGQFIHTKQQDHESFINQLLVELDG-----FE 590 (979)
Q Consensus 528 ~------------~vG~~~~~Ir~lF~~A~~~aP~ILfIDEIDaL~~~r~~~~~~~~~~~~~iln~LL~~LDg-----~~ 590 (979)
. |.|...+ -...|+.|.. +.||||||..+. ..+-..||..|+. +.
T Consensus 207 l~ESELFGhekGAFTGA~~~-r~G~fE~A~G---GTLfLDEI~~mp--------------l~~Q~kLLRvLqe~~~~rvG 268 (464)
T COG2204 207 LLESELFGHEKGAFTGAITR-RIGRFEQANG---GTLFLDEIGEMP--------------LELQVKLLRVLQEREFERVG 268 (464)
T ss_pred HHHHHhhcccccCcCCcccc-cCcceeEcCC---ceEEeeccccCC--------------HHHHHHHHHHHHcCeeEecC
Confidence 1 1121111 1235555544 999999998772 2233345555432 22
Q ss_pred cC----CeEEEEecccc--hhhchhhhhcCCcee--eEeccCCCCHHHHHH
Q 035561 591 KQ----DGVVLMATTRN--IKQIDEALQRPGRMD--RIFNLQKPTQSEREK 633 (979)
Q Consensus 591 ~~----~~ViVIATTN~--pe~LDpALlRpgRFd--~~I~~~~Pd~eeR~~ 633 (979)
++ -.|-||+|||. .+.+...-+|...|. .++.+..|...+|.+
T Consensus 269 ~~~~i~vdvRiIaaT~~dL~~~v~~G~FReDLyyRLnV~~i~iPpLRER~E 319 (464)
T COG2204 269 GNKPIKVDVRIIAATNRDLEEEVAAGRFREDLYYRLNVVPLRLPPLRERKE 319 (464)
T ss_pred CCcccceeeEEEeecCcCHHHHHHcCCcHHHHHhhhccceecCCcccccch
Confidence 21 24889999997 233443333333232 267777888877754
No 203
>PRK12377 putative replication protein; Provisional
Probab=98.63 E-value=4.3e-07 Score=98.88 Aligned_cols=103 Identities=14% Similarity=0.242 Sum_probs=61.7
Q ss_pred CCCCCCCcccCc-HHHHHHHHHHHHhhcChhHHHhcCCCCCceeEecCCCCCChHHHHHHHHHHc---CCCEEEeechhh
Q 035561 449 NPPIPLKDFASV-ESMREEINEVVAFLQNPSAFQEMGARAPRGVLIVGERGTGKTSLALAIAAEA---RVPVVNVEAQEL 524 (979)
Q Consensus 449 ~~~~~f~DIvGl-eevke~L~eiV~~L~~p~~f~~lG~~~P~gVLL~GPPGTGKTtLArAlA~el---g~~~i~Is~sdL 524 (979)
....+|+++... +..+..+.....+..+ |. ....+++|+||||||||+||.|+|+++ |..++.++..++
T Consensus 68 ~~~~tFdnf~~~~~~~~~a~~~a~~~a~~---~~----~~~~~l~l~G~~GtGKThLa~AIa~~l~~~g~~v~~i~~~~l 140 (248)
T PRK12377 68 HRKCSFANYQVQNDGQRYALSQAKSIADE---LM----TGCTNFVFSGKPGTGKNHLAAAIGNRLLAKGRSVIVVTVPDV 140 (248)
T ss_pred cccCCcCCcccCChhHHHHHHHHHHHHHH---HH----hcCCeEEEECCCCCCHHHHHHHHHHHHHHcCCCeEEEEHHHH
Confidence 345678888632 3322233322222221 11 123689999999999999999999987 678888988887
Q ss_pred hhhhhcccc-hhhHHHHHHHHHhcCCeEEEEcCcccc
Q 035561 525 EAGLWVGQS-ASNVRELFQTARDLAPVIIFVEDFDLF 560 (979)
Q Consensus 525 ~~~~~vG~~-~~~Ir~lF~~A~~~aP~ILfIDEIDaL 560 (979)
......... ......+++.. ....+|+|||++..
T Consensus 141 ~~~l~~~~~~~~~~~~~l~~l--~~~dLLiIDDlg~~ 175 (248)
T PRK12377 141 MSRLHESYDNGQSGEKFLQEL--CKVDLLVLDEIGIQ 175 (248)
T ss_pred HHHHHHHHhccchHHHHHHHh--cCCCEEEEcCCCCC
Confidence 632211000 00112233333 35789999999754
No 204
>PRK08769 DNA polymerase III subunit delta'; Validated
Probab=98.62 E-value=4.5e-07 Score=102.05 Aligned_cols=155 Identities=21% Similarity=0.258 Sum_probs=102.3
Q ss_pred CCCCceeEecCCCCCChHHHHHHHHHHcCCCE-E---Eeechhhhh-hh-----hc-------c------cchhhHHHHH
Q 035561 485 ARAPRGVLIVGERGTGKTSLALAIAAEARVPV-V---NVEAQELEA-GL-----WV-------G------QSASNVRELF 541 (979)
Q Consensus 485 ~~~P~gVLL~GPPGTGKTtLArAlA~elg~~~-i---~Is~sdL~~-~~-----~v-------G------~~~~~Ir~lF 541 (979)
.+.|..+||+||+|+||+++|.++|+.+-+.- . .+.|..++. +. ++ | .+...+|++.
T Consensus 23 ~rl~HA~Lf~Gp~G~GK~~lA~~lA~~LlC~~~~~~~~c~~c~~~~~g~HPD~~~i~~~p~~~~~k~~~~I~idqIR~l~ 102 (319)
T PRK08769 23 GRLGHGLLICGPEGLGKRAVALALAEHVLASGPDPAAAQRTRQLIAAGTHPDLQLVSFIPNRTGDKLRTEIVIEQVREIS 102 (319)
T ss_pred CCcceeEeeECCCCCCHHHHHHHHHHHHhCCCCCCCCcchHHHHHhcCCCCCEEEEecCCCcccccccccccHHHHHHHH
Confidence 35677899999999999999999999774310 0 011111110 00 01 1 2345677776
Q ss_pred HHHHhc----CCeEEEEcCccccccccccccCCCchhhHHHHHHHHhhhcccccCCeEEEEecccchhhchhhhhcCCce
Q 035561 542 QTARDL----APVIIFVEDFDLFAGVRGQFIHTKQQDHESFINQLLVELDGFEKQDGVVLMATTRNIKQIDEALQRPGRM 617 (979)
Q Consensus 542 ~~A~~~----aP~ILfIDEIDaL~~~r~~~~~~~~~~~~~iln~LL~~LDg~~~~~~ViVIATTN~pe~LDpALlRpgRF 617 (979)
+.+... .-.|++||++|.+ .....|.||+.|+. ...++++|.+|++++.|.|.+++ |.
T Consensus 103 ~~~~~~p~~g~~kV~iI~~ae~m--------------~~~AaNaLLKtLEE--Pp~~~~fiL~~~~~~~lLpTIrS--RC 164 (319)
T PRK08769 103 QKLALTPQYGIAQVVIVDPADAI--------------NRAACNALLKTLEE--PSPGRYLWLISAQPARLPATIRS--RC 164 (319)
T ss_pred HHHhhCcccCCcEEEEeccHhhh--------------CHHHHHHHHHHhhC--CCCCCeEEEEECChhhCchHHHh--hh
Confidence 665432 2369999999988 35567889998885 44566777778899999999999 44
Q ss_pred eeEeccCCCCHHHHHHHHHHHHHhccchhhhhhhhHHHHHHHcCCCCHH
Q 035561 618 DRIFNLQKPTQSEREKILRIAAQETMDEELIDLVDWRKVAEKTALLRPI 666 (979)
Q Consensus 618 d~~I~~~~Pd~eeR~~IL~~~l~~~~~~~l~~dvdL~~LA~~T~Gfsga 666 (979)
..+.|+.|+.++-.+.|... . .+..+...++..+.|-.+.
T Consensus 165 -q~i~~~~~~~~~~~~~L~~~--~------~~~~~a~~~~~l~~G~p~~ 204 (319)
T PRK08769 165 -QRLEFKLPPAHEALAWLLAQ--G------VSERAAQEALDAARGHPGL 204 (319)
T ss_pred -eEeeCCCcCHHHHHHHHHHc--C------CChHHHHHHHHHcCCCHHH
Confidence 68899999998888777642 1 1122234556666664443
No 205
>PRK07952 DNA replication protein DnaC; Validated
Probab=98.62 E-value=5.6e-07 Score=97.77 Aligned_cols=102 Identities=14% Similarity=0.277 Sum_probs=65.6
Q ss_pred CCCCCCCccc-CcHHHHHHHHHHHHhhcChhHHHhcCCCCCceeEecCCCCCChHHHHHHHHHHc---CCCEEEeechhh
Q 035561 449 NPPIPLKDFA-SVESMREEINEVVAFLQNPSAFQEMGARAPRGVLIVGERGTGKTSLALAIAAEA---RVPVVNVEAQEL 524 (979)
Q Consensus 449 ~~~~~f~DIv-Gleevke~L~eiV~~L~~p~~f~~lG~~~P~gVLL~GPPGTGKTtLArAlA~el---g~~~i~Is~sdL 524 (979)
....+|+++. +.++.+..+..+..+..+. . ....+++|+|+||||||+|+.++|.++ +..++.++..++
T Consensus 66 ~~~~tFdnf~~~~~~q~~al~~a~~~~~~~---~----~~~~~~~l~G~~GtGKThLa~aia~~l~~~g~~v~~it~~~l 138 (244)
T PRK07952 66 HQNCSFENYRVECEGQMNALSKARQYVEEF---D----GNIASFIFSGKPGTGKNHLAAAICNELLLRGKSVLIITVADI 138 (244)
T ss_pred ccCCccccccCCCchHHHHHHHHHHHHHhh---c----cCCceEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEEHHHH
Confidence 3457898876 3344444444444443221 1 113489999999999999999999988 788999999888
Q ss_pred hhhhhcc---cchhhHHHHHHHHHhcCCeEEEEcCcccc
Q 035561 525 EAGLWVG---QSASNVRELFQTARDLAPVIIFVEDFDLF 560 (979)
Q Consensus 525 ~~~~~vG---~~~~~Ir~lF~~A~~~aP~ILfIDEIDaL 560 (979)
.. .+.+ ........+++... ...+|+|||++..
T Consensus 139 ~~-~l~~~~~~~~~~~~~~l~~l~--~~dlLvIDDig~~ 174 (244)
T PRK07952 139 MS-AMKDTFSNSETSEEQLLNDLS--NVDLLVIDEIGVQ 174 (244)
T ss_pred HH-HHHHHHhhccccHHHHHHHhc--cCCEEEEeCCCCC
Confidence 63 2211 11112233444433 4789999999865
No 206
>KOG2035 consensus Replication factor C, subunit RFC3 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=98.62 E-value=8.9e-07 Score=96.09 Aligned_cols=177 Identities=14% Similarity=0.208 Sum_probs=119.8
Q ss_pred CCCCCCCCcccCcHHHHHHHHHHHHhhcChhHHHhcCCCCCceeEecCCCCCChHHHHHHHHHHc-C--CC---------
Q 035561 448 KNPPIPLKDFASVESMREEINEVVAFLQNPSAFQEMGARAPRGVLIVGERGTGKTSLALAIAAEA-R--VP--------- 515 (979)
Q Consensus 448 ~~~~~~f~DIvGleevke~L~eiV~~L~~p~~f~~lG~~~P~gVLL~GPPGTGKTtLArAlA~el-g--~~--------- 515 (979)
++++.+++.+.+.++....|+.+...- .. -++|+|||+|+||-|.+.++-+++ | ++
T Consensus 6 kyrpksl~~l~~~~e~~~~Lksl~~~~---------d~---PHll~yGPSGaGKKTrimclL~elYG~gveklki~~~t~ 73 (351)
T KOG2035|consen 6 KYRPKSLDELIYHEELANLLKSLSSTG---------DF---PHLLVYGPSGAGKKTRIMCLLRELYGVGVEKLKIETRTF 73 (351)
T ss_pred hcCcchhhhcccHHHHHHHHHHhcccC---------CC---CeEEEECCCCCCchhhHHHHHHHHhCCCchheeeeeEEE
Confidence 567788999999999888887544211 01 259999999999999999999987 2 21
Q ss_pred -----------------EEEeechhhhhhhhcccchhhHHHHHHHHHhcCC---------eEEEEcCccccccccccccC
Q 035561 516 -----------------VVNVEAQELEAGLWVGQSASNVRELFQTARDLAP---------VIIFVEDFDLFAGVRGQFIH 569 (979)
Q Consensus 516 -----------------~i~Is~sdL~~~~~vG~~~~~Ir~lF~~A~~~aP---------~ILfIDEIDaL~~~r~~~~~ 569 (979)
-++++.||. .....--+.++.++..+.+| .+++|.|+|.|...
T Consensus 74 ~tpS~kklEistvsS~yHlEitPSDa-----G~~DRvViQellKevAQt~qie~~~qr~fKvvvi~ead~LT~d------ 142 (351)
T KOG2035|consen 74 TTPSKKKLEISTVSSNYHLEITPSDA-----GNYDRVVIQELLKEVAQTQQIETQGQRPFKVVVINEADELTRD------ 142 (351)
T ss_pred ecCCCceEEEEEecccceEEeChhhc-----CcccHHHHHHHHHHHHhhcchhhccccceEEEEEechHhhhHH------
Confidence 122223321 11223346667776655443 69999999998532
Q ss_pred CCchhhHHHHHHHHhhhcccccCCeEEEEecccchhhchhhhhcCCceeeEeccCCCCHHHHHHHHHHHHHhccchhhhh
Q 035561 570 TKQQDHESFINQLLVELDGFEKQDGVVLMATTRNIKQIDEALQRPGRMDRIFNLQKPTQSEREKILRIAAQETMDEELID 649 (979)
Q Consensus 570 ~~~~~~~~iln~LL~~LDg~~~~~~ViVIATTN~pe~LDpALlRpgRFd~~I~~~~Pd~eeR~~IL~~~l~~~~~~~l~~ 649 (979)
.+....++ |+.+.+ +.-+|..+|....+-++++++| ..|.+|.|+.++...++...+++... ..+
T Consensus 143 -AQ~aLRRT-------MEkYs~--~~RlIl~cns~SriIepIrSRC---l~iRvpaps~eeI~~vl~~v~~kE~l--~lp 207 (351)
T KOG2035|consen 143 -AQHALRRT-------MEKYSS--NCRLILVCNSTSRIIEPIRSRC---LFIRVPAPSDEEITSVLSKVLKKEGL--QLP 207 (351)
T ss_pred -HHHHHHHH-------HHHHhc--CceEEEEecCcccchhHHhhhe---eEEeCCCCCHHHHHHHHHHHHHHhcc--cCc
Confidence 12223333 444333 4566667899899999999954 67899999999999999999987642 223
Q ss_pred hhhHHHHHHHcCC
Q 035561 650 LVDWRKVAEKTAL 662 (979)
Q Consensus 650 dvdL~~LA~~T~G 662 (979)
..-+..+|+.+.|
T Consensus 208 ~~~l~rIa~kS~~ 220 (351)
T KOG2035|consen 208 KELLKRIAEKSNR 220 (351)
T ss_pred HHHHHHHHHHhcc
Confidence 4456777777765
No 207
>PRK07993 DNA polymerase III subunit delta'; Validated
Probab=98.62 E-value=3.2e-07 Score=103.94 Aligned_cols=134 Identities=19% Similarity=0.239 Sum_probs=95.4
Q ss_pred CCCCceeEecCCCCCChHHHHHHHHHHcCCC--EEEeech------hhhhhh-----h-------cccchhhHHHHHHHH
Q 035561 485 ARAPRGVLIVGERGTGKTSLALAIAAEARVP--VVNVEAQ------ELEAGL-----W-------VGQSASNVRELFQTA 544 (979)
Q Consensus 485 ~~~P~gVLL~GPPGTGKTtLArAlA~elg~~--~i~Is~s------dL~~~~-----~-------vG~~~~~Ir~lF~~A 544 (979)
.+.|..+||+||+|+||+++|.++|+.+-+. --.-.|. .+..+. + ...+...+|++-+.+
T Consensus 21 ~rl~HA~Lf~G~~G~Gk~~lA~~~A~~LlC~~~~~~~~Cg~C~sC~~~~~g~HPD~~~i~p~~~~~~I~idqiR~l~~~~ 100 (334)
T PRK07993 21 GRGHHALLIQALPGMGDDALIYALSRWLMCQQPQGHKSCGHCRGCQLMQAGTHPDYYTLTPEKGKSSLGVDAVREVTEKL 100 (334)
T ss_pred CCcceEEeeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCCCCEEEEecccccccCCHHHHHHHHHHH
Confidence 4667889999999999999999999987331 0000111 000000 0 012345677766665
Q ss_pred Hh----cCCeEEEEcCccccccccccccCCCchhhHHHHHHHHhhhcccccCCeEEEEecccchhhchhhhhcCCceeeE
Q 035561 545 RD----LAPVIIFVEDFDLFAGVRGQFIHTKQQDHESFINQLLVELDGFEKQDGVVLMATTRNIKQIDEALQRPGRMDRI 620 (979)
Q Consensus 545 ~~----~aP~ILfIDEIDaL~~~r~~~~~~~~~~~~~iln~LL~~LDg~~~~~~ViVIATTN~pe~LDpALlRpgRFd~~ 620 (979)
.. ....|++||++|.+ .....|.||+.|+. +.+++++|.+|++++.|.|.++| |. ..
T Consensus 101 ~~~~~~g~~kV~iI~~ae~m--------------~~~AaNaLLKtLEE--Pp~~t~fiL~t~~~~~lLpTIrS--RC-q~ 161 (334)
T PRK07993 101 YEHARLGGAKVVWLPDAALL--------------TDAAANALLKTLEE--PPENTWFFLACREPARLLATLRS--RC-RL 161 (334)
T ss_pred hhccccCCceEEEEcchHhh--------------CHHHHHHHHHHhcC--CCCCeEEEEEECChhhChHHHHh--cc-cc
Confidence 43 23479999999987 45678899999985 55678888889999999999999 54 47
Q ss_pred eccCCCCHHHHHHHHHH
Q 035561 621 FNLQKPTQSEREKILRI 637 (979)
Q Consensus 621 I~~~~Pd~eeR~~IL~~ 637 (979)
+.|++|+.++..+.|..
T Consensus 162 ~~~~~~~~~~~~~~L~~ 178 (334)
T PRK07993 162 HYLAPPPEQYALTWLSR 178 (334)
T ss_pred ccCCCCCHHHHHHHHHH
Confidence 89999999888888764
No 208
>PRK05022 anaerobic nitric oxide reductase transcription regulator; Provisional
Probab=98.59 E-value=2.8e-07 Score=109.89 Aligned_cols=96 Identities=24% Similarity=0.366 Sum_probs=67.0
Q ss_pred CCCcccCcHHHHHHHHHHHHhhcChhHHHhcCCCCCceeEecCCCCCChHHHHHHHHHHc---CCCEEEeechhhhhhh-
Q 035561 453 PLKDFASVESMREEINEVVAFLQNPSAFQEMGARAPRGVLIVGERGTGKTSLALAIAAEA---RVPVVNVEAQELEAGL- 528 (979)
Q Consensus 453 ~f~DIvGleevke~L~eiV~~L~~p~~f~~lG~~~P~gVLL~GPPGTGKTtLArAlA~el---g~~~i~Is~sdL~~~~- 528 (979)
.+.+++|.....+.+.+.+..+ ...+..|||+|++|||||++|+++.... +.||+.++|..+..+.
T Consensus 185 ~~~~iig~s~~~~~~~~~i~~~----------a~~~~pVlI~Ge~GtGK~~~A~~ih~~s~r~~~p~v~v~c~~~~~~~~ 254 (509)
T PRK05022 185 KEGEMIGQSPAMQQLKKEIEVV----------AASDLNVLILGETGVGKELVARAIHAASPRADKPLVYLNCAALPESLA 254 (509)
T ss_pred cCCceeecCHHHHHHHHHHHHH----------hCCCCcEEEECCCCccHHHHHHHHHHhCCcCCCCeEEEEcccCChHHH
Confidence 5788999998887777666543 2335579999999999999999999875 5799999998764211
Q ss_pred ---hcccch-------hhHHHHHHHHHhcCCeEEEEcCccccc
Q 035561 529 ---WVGQSA-------SNVRELFQTARDLAPVIIFVEDFDLFA 561 (979)
Q Consensus 529 ---~vG~~~-------~~Ir~lF~~A~~~aP~ILfIDEIDaL~ 561 (979)
..|... ......|+.| .++.|||||||.|.
T Consensus 255 e~~lfG~~~g~~~ga~~~~~g~~~~a---~gGtL~ldeI~~L~ 294 (509)
T PRK05022 255 ESELFGHVKGAFTGAISNRSGKFELA---DGGTLFLDEIGELP 294 (509)
T ss_pred HHHhcCccccccCCCcccCCcchhhc---CCCEEEecChhhCC
Confidence 111100 0011234444 35899999999883
No 209
>PRK06871 DNA polymerase III subunit delta'; Validated
Probab=98.59 E-value=5.4e-07 Score=101.61 Aligned_cols=136 Identities=13% Similarity=0.177 Sum_probs=96.5
Q ss_pred CCCCceeEecCCCCCChHHHHHHHHHHcCCCE--EEeech------hhhhhh-----h----c--ccchhhHHHHHHHHH
Q 035561 485 ARAPRGVLIVGERGTGKTSLALAIAAEARVPV--VNVEAQ------ELEAGL-----W----V--GQSASNVRELFQTAR 545 (979)
Q Consensus 485 ~~~P~gVLL~GPPGTGKTtLArAlA~elg~~~--i~Is~s------dL~~~~-----~----v--G~~~~~Ir~lF~~A~ 545 (979)
.+.|.++||+||+|+||+++|+++|+.+-+.- -.-.|. .+..+. + . ..+...+|++-+.+.
T Consensus 21 ~rl~HA~Lf~G~~G~GK~~lA~~~A~~llC~~~~~~~~Cg~C~sC~~~~~g~HPD~~~i~p~~~~~I~id~iR~l~~~~~ 100 (325)
T PRK06871 21 GLGHHALLFKADSGLGTEQLIRALAQWLMCQTPQGDQPCGQCHSCHLFQAGNHPDFHILEPIDNKDIGVDQVREINEKVS 100 (325)
T ss_pred CCcceeEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHhcCCCCCEEEEccccCCCCCHHHHHHHHHHHh
Confidence 35677899999999999999999999874311 000111 000000 0 0 124556777666654
Q ss_pred h----cCCeEEEEcCccccccccccccCCCchhhHHHHHHHHhhhcccccCCeEEEEecccchhhchhhhhcCCceeeEe
Q 035561 546 D----LAPVIIFVEDFDLFAGVRGQFIHTKQQDHESFINQLLVELDGFEKQDGVVLMATTRNIKQIDEALQRPGRMDRIF 621 (979)
Q Consensus 546 ~----~aP~ILfIDEIDaL~~~r~~~~~~~~~~~~~iln~LL~~LDg~~~~~~ViVIATTN~pe~LDpALlRpgRFd~~I 621 (979)
. ..-.|++||++|.+ .....|.||+.|+. +.+++++|.+|++++.|.|.++++| ..+
T Consensus 101 ~~~~~g~~KV~iI~~a~~m--------------~~~AaNaLLKtLEE--Pp~~~~fiL~t~~~~~llpTI~SRC---~~~ 161 (325)
T PRK06871 101 QHAQQGGNKVVYIQGAERL--------------TEAAANALLKTLEE--PRPNTYFLLQADLSAALLPTIYSRC---QTW 161 (325)
T ss_pred hccccCCceEEEEechhhh--------------CHHHHHHHHHHhcC--CCCCeEEEEEECChHhCchHHHhhc---eEE
Confidence 3 23479999999987 35677899999985 5567788888999999999999944 688
Q ss_pred ccCCCCHHHHHHHHHHHH
Q 035561 622 NLQKPTQSEREKILRIAA 639 (979)
Q Consensus 622 ~~~~Pd~eeR~~IL~~~l 639 (979)
.|++|+.++..+.|....
T Consensus 162 ~~~~~~~~~~~~~L~~~~ 179 (325)
T PRK06871 162 LIHPPEEQQALDWLQAQS 179 (325)
T ss_pred eCCCCCHHHHHHHHHHHh
Confidence 999999999888887653
No 210
>PF01637 Arch_ATPase: Archaeal ATPase; InterPro: IPR011579 This domain has been found in a number of bacterial and archaeal proteins, all of which contain a conserved P-loop motif that is involved in binding ATP.; GO: 0005524 ATP binding; PDB: 2FNA_A 2QEN_A.
Probab=98.58 E-value=4.9e-07 Score=94.40 Aligned_cols=162 Identities=22% Similarity=0.300 Sum_probs=87.8
Q ss_pred CceeEecCCCCCChHHHHHHHHHHcCC---CEEEeech-hh---------------------hhhhhc------------
Q 035561 488 PRGVLIVGERGTGKTSLALAIAAEARV---PVVNVEAQ-EL---------------------EAGLWV------------ 530 (979)
Q Consensus 488 P~gVLL~GPPGTGKTtLArAlA~elg~---~~i~Is~s-dL---------------------~~~~~v------------ 530 (979)
...++|+||+|+|||++++.+...+.. ..+++++. .. ......
T Consensus 20 ~~~~~l~G~rg~GKTsLl~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 99 (234)
T PF01637_consen 20 SQHILLYGPRGSGKTSLLKEFINELKEKGYKVVYIDFLEESNESSLRSFIEETSLADELSEALGISIPSITLEKISKDLS 99 (234)
T ss_dssp SSEEEEEESTTSSHHHHHHHHHHHCT--EECCCHHCCTTBSHHHHHHHHHHHHHHHCHCHHHHHHHCCTSTTEEEECTS-
T ss_pred CcEEEEEcCCcCCHHHHHHHHHHHhhhcCCcEEEEecccchhhhHHHHHHHHHHHHHHHHHHHhhhcccccchhhhhcch
Confidence 457999999999999999999998832 22222211 00 000000
Q ss_pred ccchhhHHHHHHHHHhc-CCeEEEEcCccccc-cccccccCCCchhhHHHHHHHHhhhcccccCCe-EEEEecccc--hh
Q 035561 531 GQSASNVRELFQTARDL-APVIIFVEDFDLFA-GVRGQFIHTKQQDHESFINQLLVELDGFEKQDG-VVLMATTRN--IK 605 (979)
Q Consensus 531 G~~~~~Ir~lF~~A~~~-aP~ILfIDEIDaL~-~~r~~~~~~~~~~~~~iln~LL~~LDg~~~~~~-ViVIATTN~--pe 605 (979)
......+..+++..... ...||+|||++.+. ..+ .....+..|...++......+ .+|+++++. ..
T Consensus 100 ~~~~~~l~~~~~~l~~~~~~~iiviDe~~~~~~~~~---------~~~~~~~~l~~~~~~~~~~~~~~~v~~~S~~~~~~ 170 (234)
T PF01637_consen 100 EDSFSALERLLEKLKKKGKKVIIVIDEFQYLAIASE---------EDKDFLKSLRSLLDSLLSQQNVSIVITGSSDSLME 170 (234)
T ss_dssp GG-G--HHHHHHHHHHCHCCEEEEEETGGGGGBCTT---------TTHHHHHHHHHHHHH----TTEEEEEEESSHHHHH
T ss_pred hhHHHHHHHHHHHHHhcCCcEEEEEecHHHHhhccc---------chHHHHHHHHHHHhhccccCCceEEEECCchHHHH
Confidence 12234566666666543 34999999999986 211 234455555555555333333 344444332 11
Q ss_pred h---chhhhhcCCceeeEeccCCCCHHHHHHHHHHHHHhccchhh-hhhhhHHHHHHHcCCC
Q 035561 606 Q---IDEALQRPGRMDRIFNLQKPTQSEREKILRIAAQETMDEEL-IDLVDWRKVAEKTALL 663 (979)
Q Consensus 606 ~---LDpALlRpgRFd~~I~~~~Pd~eeR~~IL~~~l~~~~~~~l-~~dvdL~~LA~~T~Gf 663 (979)
. -.+.+.. |+.. +.+++.+.++..++++..++.. . .. .++.++..+...|.|.
T Consensus 171 ~~~~~~~~~~~--~~~~-~~l~~l~~~e~~~~~~~~~~~~-~-~~~~~~~~~~~i~~~~gG~ 227 (234)
T PF01637_consen 171 EFLDDKSPLFG--RFSH-IELKPLSKEEAREFLKELFKEL-I-KLPFSDEDIEEIYSLTGGN 227 (234)
T ss_dssp HTT-TTSTTTT-----E-EEE----HHHHHHHHHHHHHCC--------HHHHHHHHHHHTT-
T ss_pred HhhcccCcccc--ccce-EEEeeCCHHHHHHHHHHHHHHh-h-cccCCHHHHHHHHHHhCCC
Confidence 1 1223333 7776 9999999999999999987764 1 22 3667788888888884
No 211
>COG3604 FhlA Transcriptional regulator containing GAF, AAA-type ATPase, and DNA binding domains [Transcription / Signal transduction mechanisms]
Probab=98.58 E-value=2.4e-07 Score=107.24 Aligned_cols=157 Identities=22% Similarity=0.324 Sum_probs=101.0
Q ss_pred CCCCCCCcccCcHHHHHHHHHHHHhhcChhHHHhcCCCCCceeEecCCCCCChHHHHHHHHHHc---CCCEEEeechhhh
Q 035561 449 NPPIPLKDFASVESMREEINEVVAFLQNPSAFQEMGARAPRGVLIVGERGTGKTSLALAIAAEA---RVPVVNVEAQELE 525 (979)
Q Consensus 449 ~~~~~f~DIvGleevke~L~eiV~~L~~p~~f~~lG~~~P~gVLL~GPPGTGKTtLArAlA~el---g~~~i~Is~sdL~ 525 (979)
.+...+.+|||...+...+.+.|+.. ++....|||.|.+||||..+||+|.... +.||+.+||..+.
T Consensus 217 ~~~~~~~~iIG~S~am~~ll~~i~~V----------A~Sd~tVLi~GETGtGKElvAraIH~~S~R~~kPfV~~NCAAlP 286 (550)
T COG3604 217 EVVLEVGGIIGRSPAMRQLLKEIEVV----------AKSDSTVLIRGETGTGKELVARAIHQLSPRRDKPFVKLNCAALP 286 (550)
T ss_pred chhcccccceecCHHHHHHHHHHHHH----------hcCCCeEEEecCCCccHHHHHHHHHhhCcccCCCceeeeccccc
Confidence 34567889999999888888777654 2345679999999999999999999876 5799999998775
Q ss_pred hhhhcccchhhHHHHHHHHHhc--------CCeEEEEcCccccccccccccCCCchhhHHHHHHHHhhh-----cccccC
Q 035561 526 AGLWVGQSASNVRELFQTARDL--------APVIIFVEDFDLFAGVRGQFIHTKQQDHESFINQLLVEL-----DGFEKQ 592 (979)
Q Consensus 526 ~~~~vG~~~~~Ir~lF~~A~~~--------aP~ILfIDEIDaL~~~r~~~~~~~~~~~~~iln~LL~~L-----Dg~~~~ 592 (979)
.+....+--...+..|.-|... ..+-||+|||..|.- ..-..||..+ +.+.++
T Consensus 287 esLlESELFGHeKGAFTGA~~~r~GrFElAdGGTLFLDEIGelPL--------------~lQaKLLRvLQegEieRvG~~ 352 (550)
T COG3604 287 ESLLESELFGHEKGAFTGAINTRRGRFELADGGTLFLDEIGELPL--------------ALQAKLLRVLQEGEIERVGGD 352 (550)
T ss_pred hHHHHHHHhcccccccccchhccCcceeecCCCeEechhhccCCH--------------HHHHHHHHHHhhcceeecCCC
Confidence 3322222222334444444322 248999999987731 2222444443 333332
Q ss_pred C----eEEEEecccchhhchhhhhcCCce-----ee--EeccCCCCHHHHH
Q 035561 593 D----GVVLMATTRNIKQIDEALQRPGRM-----DR--IFNLQKPTQSERE 632 (979)
Q Consensus 593 ~----~ViVIATTN~pe~LDpALlRpgRF-----d~--~I~~~~Pd~eeR~ 632 (979)
. .|-||||||+ +|-.+++. |+| .+ ++.+..|...+|.
T Consensus 353 r~ikVDVRiIAATNR--DL~~~V~~-G~FRaDLYyRLsV~Pl~lPPLRER~ 400 (550)
T COG3604 353 RTIKVDVRVIAATNR--DLEEMVRD-GEFRADLYYRLSVFPLELPPLRERP 400 (550)
T ss_pred ceeEEEEEEEeccch--hHHHHHHc-CcchhhhhhcccccccCCCCcccCC
Confidence 2 4899999998 22223322 333 22 5666777777774
No 212
>PF03215 Rad17: Rad17 cell cycle checkpoint protein
Probab=98.55 E-value=9.6e-07 Score=105.26 Aligned_cols=214 Identities=15% Similarity=0.161 Sum_probs=121.2
Q ss_pred hcccCCCCCCCCcccCcHHHHHHHHHHHHhhcChhHHHhcCCCCCceeEecCCCCCChHHHHHHHHHHcCCCEEEe-ech
Q 035561 444 MKRVKNPPIPLKDFASVESMREEINEVVAFLQNPSAFQEMGARAPRGVLIVGERGTGKTSLALAIAAEARVPVVNV-EAQ 522 (979)
Q Consensus 444 l~~v~~~~~~f~DIvGleevke~L~eiV~~L~~p~~f~~lG~~~P~gVLL~GPPGTGKTtLArAlA~elg~~~i~I-s~s 522 (979)
++..++.|.+.+|++-...-.++++..+.... .+....+-+||+|||||||||+++++|+++|..+.+- +..
T Consensus 8 ~W~~ky~P~~~~eLavhkkKv~eV~~wl~~~~-------~~~~~~~iLlLtGP~G~GKtttv~~La~elg~~v~Ew~np~ 80 (519)
T PF03215_consen 8 PWVEKYAPKTLDELAVHKKKVEEVRSWLEEMF-------SGSSPKRILLLTGPSGCGKTTTVKVLAKELGFEVQEWINPV 80 (519)
T ss_pred ccchhcCCCCHHHhhccHHHHHHHHHHHHHHh-------ccCCCcceEEEECCCCCCHHHHHHHHHHHhCCeeEEecCCC
Confidence 45557888999999999866666665554311 1233345678899999999999999999999877653 222
Q ss_pred hhhh-----hhhcccc------hhh---HHHH-HHHHHh-----------cCCeEEEEcCccccccccccccCCCchhhH
Q 035561 523 ELEA-----GLWVGQS------ASN---VREL-FQTARD-----------LAPVIIFVEDFDLFAGVRGQFIHTKQQDHE 576 (979)
Q Consensus 523 dL~~-----~~~vG~~------~~~---Ir~l-F~~A~~-----------~aP~ILfIDEIDaL~~~r~~~~~~~~~~~~ 576 (979)
.+.. ..|.+.. .+. ..++ +..++. ..+.||+|||+-.+.. .......
T Consensus 81 ~~~~~~~~~~d~~s~~~~~~~f~sq~~~F~~f~l~~s~y~~l~~~g~~~~~~~kvILVEDlPN~~~-------~~~~~f~ 153 (519)
T PF03215_consen 81 SFRESDNQEDDFESDFNKFDEFLSQSDKFSEFLLRASKYSSLSMSGSNSSSNKKVILVEDLPNVFH-------RDTSRFR 153 (519)
T ss_pred CccccccccccccccccccccccchhhhhccccccccccccccccCCCcCCCceEEEeeccccccc-------hhHHHHH
Confidence 2110 0011110 011 1111 111121 2468999999865432 1112233
Q ss_pred HHHHHHHhhhcccccCCeEEEEec-c------cch--------hhchhhhhcCCceeeEeccCCCCHHHHHHHHHHHHHh
Q 035561 577 SFINQLLVELDGFEKQDGVVLMAT-T------RNI--------KQIDEALQRPGRMDRIFNLQKPTQSEREKILRIAAQE 641 (979)
Q Consensus 577 ~iln~LL~~LDg~~~~~~ViVIAT-T------N~p--------e~LDpALlRpgRFd~~I~~~~Pd~eeR~~IL~~~l~~ 641 (979)
..+.+++.. ....++++|.| | |.. ..+++.++.-.+. ..|.|.+-...--...|+..+..
T Consensus 154 ~~L~~~l~~----~~~~PlV~iiSe~~~~~~~~~~~~~~~t~~~L~~~~il~~~~i-~~I~FNpIa~T~mkKaL~rI~~~ 228 (519)
T PF03215_consen 154 EALRQYLRS----SRCLPLVFIISETESLSGDNSYRSNSFTAERLFPKEILNHPGI-TRIKFNPIAPTFMKKALKRILKK 228 (519)
T ss_pred HHHHHHHHc----CCCCCEEEEEecccccCCCCcccccchhhhhccCHHHHhCCCc-eEEEecCCCHHHHHHHHHHHHHH
Confidence 333333321 12215555555 1 111 1456666653333 47889888887776666666554
Q ss_pred cc-----chhhhhhh-hHHHHHHHcCCCCHHHHHHHHHHHhhhhh
Q 035561 642 TM-----DEELIDLV-DWRKVAEKTALLRPIELKLVPVALEGSAF 680 (979)
Q Consensus 642 ~~-----~~~l~~dv-dL~~LA~~T~GfsgaDL~~Lv~aa~~aa~ 680 (979)
.. ........ .++.|+..+.| ||...++.++..+.
T Consensus 229 E~~~~~~~~~~p~~~~~l~~I~~~s~G----DIRsAIn~LQf~~~ 269 (519)
T PF03215_consen 229 EARSSSGKNKVPDKQSVLDSIAESSNG----DIRSAINNLQFWCL 269 (519)
T ss_pred HhhhhcCCccCCChHHHHHHHHHhcCc----hHHHHHHHHHHHhc
Confidence 31 11111222 36788877665 99999988888776
No 213
>KOG1942 consensus DNA helicase, TBP-interacting protein [Replication, recombination and repair]
Probab=98.54 E-value=2.1e-06 Score=93.61 Aligned_cols=69 Identities=36% Similarity=0.489 Sum_probs=54.7
Q ss_pred CCCCCCcccCcHHHHHHHHHHHHhhcChhHHHhcCCCCCceeEecCCCCCChHHHHHHHHHHcC--CCEEEeechhhh
Q 035561 450 PPIPLKDFASVESMREEINEVVAFLQNPSAFQEMGARAPRGVLIVGERGTGKTSLALAIAAEAR--VPVVNVEAQELE 525 (979)
Q Consensus 450 ~~~~f~DIvGleevke~L~eiV~~L~~p~~f~~lG~~~P~gVLL~GPPGTGKTtLArAlA~elg--~~~i~Is~sdL~ 525 (979)
+...-..++|++++++.---+++..+... + ..+++||.||||||||.+|-++++++| +||..+.+|+..
T Consensus 33 ~~~~~~g~vGQ~~AReAagiivdlik~Kk----m---aGravLlaGppgtGKTAlAlaisqELG~kvPFcpmvgSEvy 103 (456)
T KOG1942|consen 33 AVEVAAGFVGQENAREAAGIIVDLIKSKK----M---AGRAVLLAGPPGTGKTALALAISQELGPKVPFCPMVGSEVY 103 (456)
T ss_pred eeecccccccchhhhhhhhHHHHHHHhhh----c---cCcEEEEecCCCCchhHHHHHHHHHhCCCCCcccccchhhh
Confidence 34455789999999998777776654432 1 246799999999999999999999995 788888887765
No 214
>PRK08939 primosomal protein DnaI; Reviewed
Probab=98.53 E-value=3.6e-07 Score=102.40 Aligned_cols=103 Identities=20% Similarity=0.308 Sum_probs=63.7
Q ss_pred CCCCCcccCcH-HHHHHHHHHHHhhcChhHHHhcCCCCCceeEecCCCCCChHHHHHHHHHHc---CCCEEEeechhhhh
Q 035561 451 PIPLKDFASVE-SMREEINEVVAFLQNPSAFQEMGARAPRGVLIVGERGTGKTSLALAIAAEA---RVPVVNVEAQELEA 526 (979)
Q Consensus 451 ~~~f~DIvGle-evke~L~eiV~~L~~p~~f~~lG~~~P~gVLL~GPPGTGKTtLArAlA~el---g~~~i~Is~sdL~~ 526 (979)
..+|+++...+ +....+.....++.+ +.. .+.++|++|+||+|||||+||.|+|+++ |.++..+..++|+.
T Consensus 123 ~atf~~~~~~~~~~~~~~~~~~~fi~~---~~~--~~~~~gl~L~G~~G~GKThLa~Aia~~l~~~g~~v~~~~~~~l~~ 197 (306)
T PRK08939 123 QASLADIDLDDRDRLDALMAALDFLEA---YPP--GEKVKGLYLYGDFGVGKSYLLAAIANELAKKGVSSTLLHFPEFIR 197 (306)
T ss_pred cCcHHHhcCCChHHHHHHHHHHHHHHH---hhc--cCCCCeEEEECCCCCCHHHHHHHHHHHHHHcCCCEEEEEHHHHHH
Confidence 35677776444 222333333333322 111 1345799999999999999999999998 78888888888763
Q ss_pred hhhcccchhhHHHHHHHHHhcCCeEEEEcCcccc
Q 035561 527 GLWVGQSASNVRELFQTARDLAPVIIFVEDFDLF 560 (979)
Q Consensus 527 ~~~vG~~~~~Ir~lF~~A~~~aP~ILfIDEIDaL 560 (979)
..-.......+...++..+ ...+|+|||+.+-
T Consensus 198 ~lk~~~~~~~~~~~l~~l~--~~dlLiIDDiG~e 229 (306)
T PRK08939 198 ELKNSISDGSVKEKIDAVK--EAPVLMLDDIGAE 229 (306)
T ss_pred HHHHHHhcCcHHHHHHHhc--CCCEEEEecCCCc
Confidence 3211111122333344433 4689999999653
No 215
>PRK10820 DNA-binding transcriptional regulator TyrR; Provisional
Probab=98.52 E-value=4.3e-07 Score=108.65 Aligned_cols=99 Identities=17% Similarity=0.312 Sum_probs=66.1
Q ss_pred CCCCCCcccCcHHHHHHHHHHHHhhcChhHHHhcCCCCCceeEecCCCCCChHHHHHHHHHHc---CCCEEEeechhhhh
Q 035561 450 PPIPLKDFASVESMREEINEVVAFLQNPSAFQEMGARAPRGVLIVGERGTGKTSLALAIAAEA---RVPVVNVEAQELEA 526 (979)
Q Consensus 450 ~~~~f~DIvGleevke~L~eiV~~L~~p~~f~~lG~~~P~gVLL~GPPGTGKTtLArAlA~el---g~~~i~Is~sdL~~ 526 (979)
...+|++++|.....+.+.+.+..+ . .....|||+|++||||+++|+++.... +.||+.++|..+..
T Consensus 199 ~~~~f~~~ig~s~~~~~~~~~~~~~------A----~~~~pvlI~GE~GtGK~~lA~aiH~~s~r~~~pfv~inca~~~~ 268 (520)
T PRK10820 199 DDSAFSQIVAVSPKMRQVVEQARKL------A----MLDAPLLITGDTGTGKDLLAYACHLRSPRGKKPFLALNCASIPD 268 (520)
T ss_pred ccccccceeECCHHHHHHHHHHHHH------h----CCCCCEEEECCCCccHHHHHHHHHHhCCCCCCCeEEeccccCCH
Confidence 3468999999987666665444322 1 123459999999999999999987654 46999999987642
Q ss_pred hh----hcccch-------hhHHHHHHHHHhcCCeEEEEcCccccc
Q 035561 527 GL----WVGQSA-------SNVRELFQTARDLAPVIIFVEDFDLFA 561 (979)
Q Consensus 527 ~~----~vG~~~-------~~Ir~lF~~A~~~aP~ILfIDEIDaL~ 561 (979)
+. ..|... ..-..+|+.|. .+.|||||||.+.
T Consensus 269 ~~~e~elFG~~~~~~~~~~~~~~g~~e~a~---~GtL~LdeI~~L~ 311 (520)
T PRK10820 269 DVVESELFGHAPGAYPNALEGKKGFFEQAN---GGSVLLDEIGEMS 311 (520)
T ss_pred HHHHHHhcCCCCCCcCCcccCCCChhhhcC---CCEEEEeChhhCC
Confidence 11 112110 11123455553 4899999999883
No 216
>PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins. TniB is a probable ATP-binding protein [] which is involved in Tn5053 mercury resistance transposition [].
Probab=98.51 E-value=2.7e-06 Score=94.36 Aligned_cols=209 Identities=21% Similarity=0.275 Sum_probs=121.3
Q ss_pred CcccCcHHHHHHHHHHHHhhcChhHHHhcCCCCCceeEecCCCCCChHHHHHHHHHHc---------CCCEEEeechhh-
Q 035561 455 KDFASVESMREEINEVVAFLQNPSAFQEMGARAPRGVLIVGERGTGKTSLALAIAAEA---------RVPVVNVEAQEL- 524 (979)
Q Consensus 455 ~DIvGleevke~L~eiV~~L~~p~~f~~lG~~~P~gVLL~GPPGTGKTtLArAlA~el---------g~~~i~Is~sdL- 524 (979)
+--+|.+.+++.|..+.+.+..|.. .+. .++||+|++|.|||++++..+... .+|++.+.+..-
T Consensus 34 ~rWIgY~~A~~~L~~L~~Ll~~P~~-----~Rm-p~lLivG~snnGKT~Ii~rF~~~hp~~~d~~~~~~PVv~vq~P~~p 107 (302)
T PF05621_consen 34 DRWIGYPRAKEALDRLEELLEYPKR-----HRM-PNLLIVGDSNNGKTMIIERFRRLHPPQSDEDAERIPVVYVQMPPEP 107 (302)
T ss_pred CCeecCHHHHHHHHHHHHHHhCCcc-----cCC-CceEEecCCCCcHHHHHHHHHHHCCCCCCCCCccccEEEEecCCCC
Confidence 5578999999999888877777742 233 459999999999999999999754 257887765321
Q ss_pred ---------hhhh---h-cccc-hhhHHHHHHHHHhcCCeEEEEcCccccccccccccCCCchhhHHHHHHHHhhhcccc
Q 035561 525 ---------EAGL---W-VGQS-ASNVRELFQTARDLAPVIIFVEDFDLFAGVRGQFIHTKQQDHESFINQLLVELDGFE 590 (979)
Q Consensus 525 ---------~~~~---~-vG~~-~~~Ir~lF~~A~~~aP~ILfIDEIDaL~~~r~~~~~~~~~~~~~iln~LL~~LDg~~ 590 (979)
.... + .... ...-..+....+...+-+|+|||++.++. +.......++|.|-..-+.+
T Consensus 108 ~~~~~Y~~IL~~lgaP~~~~~~~~~~~~~~~~llr~~~vrmLIIDE~H~lLa-------Gs~~~qr~~Ln~LK~L~NeL- 179 (302)
T PF05621_consen 108 DERRFYSAILEALGAPYRPRDRVAKLEQQVLRLLRRLGVRMLIIDEFHNLLA-------GSYRKQREFLNALKFLGNEL- 179 (302)
T ss_pred ChHHHHHHHHHHhCcccCCCCCHHHHHHHHHHHHHHcCCcEEEeechHHHhc-------ccHHHHHHHHHHHHHHhhcc-
Confidence 1000 1 1111 11222334555667889999999999753 12222334444332221111
Q ss_pred cCCeEEEEecccchhhc--hhhhhcCCceeeEeccCCCCH-HHHHHHHHHHHHhccc---hhhhhhhhHHHHHHHcCCCC
Q 035561 591 KQDGVVLMATTRNIKQI--DEALQRPGRMDRIFNLQKPTQ-SEREKILRIAAQETMD---EELIDLVDWRKVAEKTALLR 664 (979)
Q Consensus 591 ~~~~ViVIATTN~pe~L--DpALlRpgRFd~~I~~~~Pd~-eeR~~IL~~~l~~~~~---~~l~~dvdL~~LA~~T~Gfs 664 (979)
.-.++.+||..-...+ |+-+.+ ||+ .+.+|.-.. ++-..+|..+-..... ..+.+..-...|-..|.|..
T Consensus 180 -~ipiV~vGt~~A~~al~~D~QLa~--RF~-~~~Lp~W~~d~ef~~LL~s~e~~LPLr~~S~l~~~~la~~i~~~s~G~i 255 (302)
T PF05621_consen 180 -QIPIVGVGTREAYRALRTDPQLAS--RFE-PFELPRWELDEEFRRLLASFERALPLRKPSNLASPELARRIHERSEGLI 255 (302)
T ss_pred -CCCeEEeccHHHHHHhccCHHHHh--ccC-CccCCCCCCCcHHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHcCCch
Confidence 1234455544333433 788888 996 556666543 3445566555443211 12222222346667888977
Q ss_pred HHHHHHHHHHHhhhhhcc
Q 035561 665 PIELKLVPVALEGSAFRS 682 (979)
Q Consensus 665 gaDL~~Lv~aa~~aa~r~ 682 (979)
| ++..+...+...|+++
T Consensus 256 G-~l~~ll~~aA~~AI~s 272 (302)
T PF05621_consen 256 G-ELSRLLNAAAIAAIRS 272 (302)
T ss_pred H-HHHHHHHHHHHHHHhc
Confidence 6 6666666665556554
No 217
>PRK08181 transposase; Validated
Probab=98.50 E-value=3.7e-07 Score=100.55 Aligned_cols=72 Identities=19% Similarity=0.267 Sum_probs=51.9
Q ss_pred CceeEecCCCCCChHHHHHHHHHHc---CCCEEEeechhhhhhhhcccchhhHHHHHHHHHhcCCeEEEEcCccccc
Q 035561 488 PRGVLIVGERGTGKTSLALAIAAEA---RVPVVNVEAQELEAGLWVGQSASNVRELFQTARDLAPVIIFVEDFDLFA 561 (979)
Q Consensus 488 P~gVLL~GPPGTGKTtLArAlA~el---g~~~i~Is~sdL~~~~~vG~~~~~Ir~lF~~A~~~aP~ILfIDEIDaL~ 561 (979)
..+++|+||||||||+||.++|.++ |..+++++..+++...............+.... .+.+|+|||++.+.
T Consensus 106 ~~nlll~Gp~GtGKTHLa~Aia~~a~~~g~~v~f~~~~~L~~~l~~a~~~~~~~~~l~~l~--~~dLLIIDDlg~~~ 180 (269)
T PRK08181 106 GANLLLFGPPGGGKSHLAAAIGLALIENGWRVLFTRTTDLVQKLQVARRELQLESAIAKLD--KFDLLILDDLAYVT 180 (269)
T ss_pred CceEEEEecCCCcHHHHHHHHHHHHHHcCCceeeeeHHHHHHHHHHHHhCCcHHHHHHHHh--cCCEEEEecccccc
Confidence 4579999999999999999999765 788999999888743222222223334444433 46899999998663
No 218
>PRK06526 transposase; Provisional
Probab=98.49 E-value=1.7e-07 Score=102.42 Aligned_cols=72 Identities=22% Similarity=0.292 Sum_probs=49.8
Q ss_pred CCceeEecCCCCCChHHHHHHHHHHc---CCCEEEeechhhhhhhhcccchhhHHHHHHHHHhcCCeEEEEcCcccc
Q 035561 487 APRGVLIVGERGTGKTSLALAIAAEA---RVPVVNVEAQELEAGLWVGQSASNVRELFQTARDLAPVIIFVEDFDLF 560 (979)
Q Consensus 487 ~P~gVLL~GPPGTGKTtLArAlA~el---g~~~i~Is~sdL~~~~~vG~~~~~Ir~lF~~A~~~aP~ILfIDEIDaL 560 (979)
.+.+++|+||||||||++|.+++.++ |..+..+++++++...........+...+... ..+.+|+|||++.+
T Consensus 97 ~~~nlll~Gp~GtGKThLa~al~~~a~~~g~~v~f~t~~~l~~~l~~~~~~~~~~~~l~~l--~~~dlLIIDD~g~~ 171 (254)
T PRK06526 97 GKENVVFLGPPGTGKTHLAIGLGIRACQAGHRVLFATAAQWVARLAAAHHAGRLQAELVKL--GRYPLLIVDEVGYI 171 (254)
T ss_pred cCceEEEEeCCCCchHHHHHHHHHHHHHCCCchhhhhHHHHHHHHHHHHhcCcHHHHHHHh--ccCCEEEEcccccC
Confidence 35689999999999999999999875 77888888887763321111112222333332 34689999999876
No 219
>PRK06090 DNA polymerase III subunit delta'; Validated
Probab=98.48 E-value=8.5e-07 Score=99.80 Aligned_cols=130 Identities=18% Similarity=0.262 Sum_probs=93.8
Q ss_pred CCCCceeEecCCCCCChHHHHHHHHHHcCCC-----------------------EEEeechhhhhhhhcccchhhHHHHH
Q 035561 485 ARAPRGVLIVGERGTGKTSLALAIAAEARVP-----------------------VVNVEAQELEAGLWVGQSASNVRELF 541 (979)
Q Consensus 485 ~~~P~gVLL~GPPGTGKTtLArAlA~elg~~-----------------------~i~Is~sdL~~~~~vG~~~~~Ir~lF 541 (979)
.+.|.++||+||.|+||+++|+++|+.+-+. ++.+....- + ...+...+|++-
T Consensus 22 ~rl~hA~L~~G~~G~Gk~~lA~~~a~~llC~~~~~~~Cg~C~sC~~~~~g~HPD~~~i~p~~~--~--~~I~vdqiR~l~ 97 (319)
T PRK06090 22 GRIPGALLLQSDEGLGVESLVELFSRALLCQNYQSEACGFCHSCELMQSGNHPDLHVIKPEKE--G--KSITVEQIRQCN 97 (319)
T ss_pred CCcceeEeeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCHHHHHHHcCCCCCEEEEecCcC--C--CcCCHHHHHHHH
Confidence 4567789999999999999999999977321 111111000 0 012344667665
Q ss_pred HHHHhc----CCeEEEEcCccccccccccccCCCchhhHHHHHHHHhhhcccccCCeEEEEecccchhhchhhhhcCCce
Q 035561 542 QTARDL----APVIIFVEDFDLFAGVRGQFIHTKQQDHESFINQLLVELDGFEKQDGVVLMATTRNIKQIDEALQRPGRM 617 (979)
Q Consensus 542 ~~A~~~----aP~ILfIDEIDaL~~~r~~~~~~~~~~~~~iln~LL~~LDg~~~~~~ViVIATTN~pe~LDpALlRpgRF 617 (979)
+.+... .-.|++||++|.+ .....|.||+.|+. +.+++++|.+|++++.|.|.++++|
T Consensus 98 ~~~~~~~~~~~~kV~iI~~ae~m--------------~~~AaNaLLKtLEE--Pp~~t~fiL~t~~~~~lLpTI~SRC-- 159 (319)
T PRK06090 98 RLAQESSQLNGYRLFVIEPADAM--------------NESASNALLKTLEE--PAPNCLFLLVTHNQKRLLPTIVSRC-- 159 (319)
T ss_pred HHHhhCcccCCceEEEecchhhh--------------CHHHHHHHHHHhcC--CCCCeEEEEEECChhhChHHHHhcc--
Confidence 555332 2479999999987 35677899999985 5566888888899999999999944
Q ss_pred eeEeccCCCCHHHHHHHHHH
Q 035561 618 DRIFNLQKPTQSEREKILRI 637 (979)
Q Consensus 618 d~~I~~~~Pd~eeR~~IL~~ 637 (979)
..+.|++|+.++..+.|..
T Consensus 160 -q~~~~~~~~~~~~~~~L~~ 178 (319)
T PRK06090 160 -QQWVVTPPSTAQAMQWLKG 178 (319)
T ss_pred -eeEeCCCCCHHHHHHHHHH
Confidence 6889999999988887764
No 220
>PF14532 Sigma54_activ_2: Sigma-54 interaction domain; PDB: 3CO5_B 3N70_H.
Probab=98.46 E-value=2.9e-07 Score=90.83 Aligned_cols=59 Identities=31% Similarity=0.481 Sum_probs=45.0
Q ss_pred CceeEecCCCCCChHHHHHHHHHHcC---CCEEEeechhhhhhhhcccchhhHHHHHHHHHhcCCeEEEEcCccccc
Q 035561 488 PRGVLIVGERGTGKTSLALAIAAEAR---VPVVNVEAQELEAGLWVGQSASNVRELFQTARDLAPVIIFVEDFDLFA 561 (979)
Q Consensus 488 P~gVLL~GPPGTGKTtLArAlA~elg---~~~i~Is~sdL~~~~~vG~~~~~Ir~lF~~A~~~aP~ILfIDEIDaL~ 561 (979)
...|||+|+|||||+++|+++....+ .+|+.++|..+. .++++.+ .++.|||+|+|.+.
T Consensus 21 ~~pvli~GE~GtGK~~~A~~lh~~~~~~~~~~~~~~~~~~~------------~~~l~~a---~~gtL~l~~i~~L~ 82 (138)
T PF14532_consen 21 SSPVLITGEPGTGKSLLARALHRYSGRANGPFIVIDCASLP------------AELLEQA---KGGTLYLKNIDRLS 82 (138)
T ss_dssp SS-EEEECCTTSSHHHHHHCCHHTTTTCCS-CCCCCHHCTC------------HHHHHHC---TTSEEEEECGCCS-
T ss_pred CCcEEEEcCCCCCHHHHHHHHHhhcCccCCCeEEechhhCc------------HHHHHHc---CCCEEEECChHHCC
Confidence 34599999999999999999999875 477777776642 3455555 56999999999883
No 221
>PRK08699 DNA polymerase III subunit delta'; Validated
Probab=98.46 E-value=6.8e-07 Score=100.98 Aligned_cols=133 Identities=22% Similarity=0.274 Sum_probs=92.1
Q ss_pred CCCceeEecCCCCCChHHHHHHHHHHcCCC-------------------------EEEeechhhh--hhh-hcccchhhH
Q 035561 486 RAPRGVLIVGERGTGKTSLALAIAAEARVP-------------------------VVNVEAQELE--AGL-WVGQSASNV 537 (979)
Q Consensus 486 ~~P~gVLL~GPPGTGKTtLArAlA~elg~~-------------------------~i~Is~sdL~--~~~-~vG~~~~~I 537 (979)
+.|.++||+||+|+|||++|+.+|+.+.+. ++.++...-. .++ ....+...+
T Consensus 19 r~~hA~Lf~G~~G~GK~~la~~~a~~llC~~~~~~~~~Cg~C~~C~~~~~~~HpD~~~~~p~~~~~~~g~~~~~I~id~i 98 (325)
T PRK08699 19 RRPNAWLFAGKKGIGKTAFARFAAQALLCETPAPGHKPCGECMSCHLFGQGSHPDFYEITPLSDEPENGRKLLQIKIDAV 98 (325)
T ss_pred CcceEEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCcCHHHHHHhcCCCCCEEEEecccccccccccCCCcCHHHH
Confidence 678899999999999999999999987431 2222221000 000 001245668
Q ss_pred HHHHHHHHhc----CCeEEEEcCccccccccccccCCCchhhHHHHHHHHhhhcccccCCeEEEEecccchhhchhhhhc
Q 035561 538 RELFQTARDL----APVIIFVEDFDLFAGVRGQFIHTKQQDHESFINQLLVELDGFEKQDGVVLMATTRNIKQIDEALQR 613 (979)
Q Consensus 538 r~lF~~A~~~----aP~ILfIDEIDaL~~~r~~~~~~~~~~~~~iln~LL~~LDg~~~~~~ViVIATTN~pe~LDpALlR 613 (979)
|++.+.+... ...|++||+++.+ .....+.|++.|+... .++.+|.+|++++.+.+.+++
T Consensus 99 R~l~~~~~~~p~~~~~kV~iiEp~~~L--------------d~~a~naLLk~LEep~--~~~~~Ilvth~~~~ll~ti~S 162 (325)
T PRK08699 99 REIIDNVYLTSVRGGLRVILIHPAESM--------------NLQAANSLLKVLEEPP--PQVVFLLVSHAADKVLPTIKS 162 (325)
T ss_pred HHHHHHHhhCcccCCceEEEEechhhC--------------CHHHHHHHHHHHHhCc--CCCEEEEEeCChHhChHHHHH
Confidence 8887777542 2469999999977 2345667777777653 335566688889999999998
Q ss_pred CCceeeEeccCCCCHHHHHHHHHH
Q 035561 614 PGRMDRIFNLQKPTQSEREKILRI 637 (979)
Q Consensus 614 pgRFd~~I~~~~Pd~eeR~~IL~~ 637 (979)
|. ..+.|++|+.++..+.|+.
T Consensus 163 --Rc-~~~~~~~~~~~~~~~~L~~ 183 (325)
T PRK08699 163 --RC-RKMVLPAPSHEEALAYLRE 183 (325)
T ss_pred --Hh-hhhcCCCCCHHHHHHHHHh
Confidence 44 7889999999998887764
No 222
>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif. They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.
Probab=98.46 E-value=2.1e-07 Score=96.35 Aligned_cols=71 Identities=30% Similarity=0.431 Sum_probs=49.1
Q ss_pred CCceeEecCCCCCChHHHHHHHHHHc---CCCEEEeechhhhhhhhcccchhhHHHHHHHHHhcCCeEEEEcCccc
Q 035561 487 APRGVLIVGERGTGKTSLALAIAAEA---RVPVVNVEAQELEAGLWVGQSASNVRELFQTARDLAPVIIFVEDFDL 559 (979)
Q Consensus 487 ~P~gVLL~GPPGTGKTtLArAlA~el---g~~~i~Is~sdL~~~~~vG~~~~~Ir~lF~~A~~~aP~ILfIDEIDa 559 (979)
.+.|++|+||||||||+||.+++.++ |.++..++.++++...............+.... ...+|+|||+..
T Consensus 46 ~~~~l~l~G~~G~GKThLa~ai~~~~~~~g~~v~f~~~~~L~~~l~~~~~~~~~~~~~~~l~--~~dlLilDDlG~ 119 (178)
T PF01695_consen 46 NGENLILYGPPGTGKTHLAVAIANEAIRKGYSVLFITASDLLDELKQSRSDGSYEELLKRLK--RVDLLILDDLGY 119 (178)
T ss_dssp C--EEEEEESTTSSHHHHHHHHHHHHHHTT--EEEEEHHHHHHHHHCCHCCTTHCHHHHHHH--TSSCEEEETCTS
T ss_pred cCeEEEEEhhHhHHHHHHHHHHHHHhccCCcceeEeecCceeccccccccccchhhhcCccc--cccEecccccce
Confidence 45789999999999999999999876 889999999998744322222223334444443 357899999863
No 223
>COG0606 Predicted ATPase with chaperone activity [Posttranslational modification, protein turnover, chaperones]
Probab=98.45 E-value=9.4e-08 Score=110.43 Aligned_cols=47 Identities=30% Similarity=0.415 Sum_probs=38.5
Q ss_pred CCCCcccCcHHHHHHHHHHHHhhcChhHHHhcCCCCCceeEecCCCCCChHHHHHHHHHHc
Q 035561 452 IPLKDFASVESMREEINEVVAFLQNPSAFQEMGARAPRGVLIVGERGTGKTSLALAIAAEA 512 (979)
Q Consensus 452 ~~f~DIvGleevke~L~eiV~~L~~p~~f~~lG~~~P~gVLL~GPPGTGKTtLArAlA~el 512 (979)
..|.||.|++.+|..|.... .| ..|+|++||||||||++|+.+..-+
T Consensus 176 ~D~~DV~GQ~~AKrAleiAA-----------AG---gHnLl~~GpPGtGKTmla~Rl~~lL 222 (490)
T COG0606 176 PDFKDVKGQEQAKRALEIAA-----------AG---GHNLLLVGPPGTGKTMLASRLPGLL 222 (490)
T ss_pred cchhhhcCcHHHHHHHHHHH-----------hc---CCcEEEecCCCCchHHhhhhhcccC
Confidence 47999999999999987321 23 3479999999999999999988754
No 224
>PF13173 AAA_14: AAA domain
Probab=98.42 E-value=1.4e-06 Score=84.93 Aligned_cols=118 Identities=20% Similarity=0.320 Sum_probs=71.1
Q ss_pred ceeEecCCCCCChHHHHHHHHHHcC--CCEEEeechhhhhhhhcccchhhHHHHHHHHHhcCCeEEEEcCcccccccccc
Q 035561 489 RGVLIVGERGTGKTSLALAIAAEAR--VPVVNVEAQELEAGLWVGQSASNVRELFQTARDLAPVIIFVEDFDLFAGVRGQ 566 (979)
Q Consensus 489 ~gVLL~GPPGTGKTtLArAlA~elg--~~~i~Is~sdL~~~~~vG~~~~~Ir~lF~~A~~~aP~ILfIDEIDaL~~~r~~ 566 (979)
+.++|+||+||||||+++.+++.+. .+++++++.+..... .....+.+.+.......+.+|||||++.+-
T Consensus 3 ~~~~l~G~R~vGKTtll~~~~~~~~~~~~~~yi~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~i~iDEiq~~~----- 74 (128)
T PF13173_consen 3 KIIILTGPRGVGKTTLLKQLAKDLLPPENILYINFDDPRDRR---LADPDLLEYFLELIKPGKKYIFIDEIQYLP----- 74 (128)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhcccccceeeccCCHHHHH---HhhhhhHHHHHHhhccCCcEEEEehhhhhc-----
Confidence 4589999999999999999999886 888999988764211 111102233333322267999999998661
Q ss_pred ccCCCchhhHHHHHHHHhhhcccccCCeEEEEecccchhh----chhhhhcCCceeeEeccCCCCHHH
Q 035561 567 FIHTKQQDHESFINQLLVELDGFEKQDGVVLMATTRNIKQ----IDEALQRPGRMDRIFNLQKPTQSE 630 (979)
Q Consensus 567 ~~~~~~~~~~~iln~LL~~LDg~~~~~~ViVIATTN~pe~----LDpALlRpgRFd~~I~~~~Pd~ee 630 (979)
.....+..+. |. ..++-++.|+..... +...+ +||.. .+++.+.+..|
T Consensus 75 -------~~~~~lk~l~---d~---~~~~~ii~tgS~~~~l~~~~~~~l--~gr~~-~~~l~Plsf~E 126 (128)
T PF13173_consen 75 -------DWEDALKFLV---DN---GPNIKIILTGSSSSLLSKDIAESL--AGRVI-EIELYPLSFRE 126 (128)
T ss_pred -------cHHHHHHHHH---Hh---ccCceEEEEccchHHHhhcccccC--CCeEE-EEEECCCCHHH
Confidence 2344444444 22 123333333333222 23333 45764 67888877665
No 225
>PRK09183 transposase/IS protein; Provisional
Probab=98.40 E-value=6.6e-07 Score=98.02 Aligned_cols=73 Identities=25% Similarity=0.418 Sum_probs=51.2
Q ss_pred CCceeEecCCCCCChHHHHHHHHHHc---CCCEEEeechhhhhhhhcccchhhHHHHHHHHHhcCCeEEEEcCcccc
Q 035561 487 APRGVLIVGERGTGKTSLALAIAAEA---RVPVVNVEAQELEAGLWVGQSASNVRELFQTARDLAPVIIFVEDFDLF 560 (979)
Q Consensus 487 ~P~gVLL~GPPGTGKTtLArAlA~el---g~~~i~Is~sdL~~~~~vG~~~~~Ir~lF~~A~~~aP~ILfIDEIDaL 560 (979)
...+++|+||||||||+||.+++..+ |..+..+++.++............+...+... ...+.+|+|||++.+
T Consensus 101 ~~~~v~l~Gp~GtGKThLa~al~~~a~~~G~~v~~~~~~~l~~~l~~a~~~~~~~~~~~~~-~~~~dlLiiDdlg~~ 176 (259)
T PRK09183 101 RNENIVLLGPSGVGKTHLAIALGYEAVRAGIKVRFTTAADLLLQLSTAQRQGRYKTTLQRG-VMAPRLLIIDEIGYL 176 (259)
T ss_pred cCCeEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEEeHHHHHHHHHHHHHCCcHHHHHHHH-hcCCCEEEEcccccC
Confidence 34679999999999999999998764 77888888887763221111222344455543 236789999999765
No 226
>KOG2227 consensus Pre-initiation complex, subunit CDC6, AAA+ superfamily ATPase [Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=98.39 E-value=6.6e-06 Score=94.82 Aligned_cols=195 Identities=14% Similarity=0.188 Sum_probs=124.5
Q ss_pred CCcccCcHHHHHHHHHHHHhhcChhHHHhcCCCCCceeEecCCCCCChHHHHHHHHHHcC-----CCEEEeechhhhhhh
Q 035561 454 LKDFASVESMREEINEVVAFLQNPSAFQEMGARAPRGVLIVGERGTGKTSLALAIAAEAR-----VPVVNVEAQELEAGL 528 (979)
Q Consensus 454 f~DIvGleevke~L~eiV~~L~~p~~f~~lG~~~P~gVLL~GPPGTGKTtLArAlA~elg-----~~~i~Is~sdL~~~~ 528 (979)
-..+.|-+.....+++++.. .+..+.+.++.+.|.||||||.+...+-..+. ...++++|..+....
T Consensus 149 p~~l~gRe~e~~~v~~F~~~--------hle~~t~gSlYVsG~PGtgkt~~l~rvl~~~~~~~~~~~~v~inc~sl~~~~ 220 (529)
T KOG2227|consen 149 PGTLKGRELEMDIVREFFSL--------HLELNTSGSLYVSGQPGTGKTALLSRVLDSLSKSSKSPVTVYINCTSLTEAS 220 (529)
T ss_pred CCCccchHHHHHHHHHHHHh--------hhhcccCcceEeeCCCCcchHHHHHHHHHhhhhhcccceeEEEeeccccchH
Confidence 35688888777777765532 23456678899999999999999887766552 355889997642111
Q ss_pred ---------h----ccc-chhhHHHHHHHH-Hhc-CCeEEEEcCccccccccccccCCCchhhHHHHHHHHhhhcccccC
Q 035561 529 ---------W----VGQ-SASNVRELFQTA-RDL-APVIIFVEDFDLFAGVRGQFIHTKQQDHESFINQLLVELDGFEKQ 592 (979)
Q Consensus 529 ---------~----vG~-~~~~Ir~lF~~A-~~~-aP~ILfIDEIDaL~~~r~~~~~~~~~~~~~iln~LL~~LDg~~~~ 592 (979)
+ .+. +.......|+.- ... .+-|+++||+|.|+.++. .++..+ -++..+ .+
T Consensus 221 aiF~kI~~~~~q~~~s~~~~~~~~~~~~~h~~q~k~~~llVlDEmD~L~tr~~-----------~vLy~l-Fewp~l-p~ 287 (529)
T KOG2227|consen 221 AIFKKIFSSLLQDLVSPGTGMQHLEKFEKHTKQSKFMLLLVLDEMDHLITRSQ-----------TVLYTL-FEWPKL-PN 287 (529)
T ss_pred HHHHHHHHHHHHHhcCCchhHHHHHHHHHHHhcccceEEEEechhhHHhhccc-----------ceeeee-hhcccC-Cc
Confidence 1 111 112222333332 222 378999999999973221 111111 122222 35
Q ss_pred CeEEEEecccchhhchhhhh---c-CCceeeEeccCCCCHHHHHHHHHHHHHhccchhhhhhhhHHHHHHHcCCCCHHHH
Q 035561 593 DGVVLMATTRNIKQIDEALQ---R-PGRMDRIFNLQKPTQSEREKILRIAAQETMDEELIDLVDWRKVAEKTALLRPIEL 668 (979)
Q Consensus 593 ~~ViVIATTN~pe~LDpALl---R-pgRFd~~I~~~~Pd~eeR~~IL~~~l~~~~~~~l~~dvdL~~LA~~T~GfsgaDL 668 (979)
..+++|+.+|..+.=|..|- . .+.-...+.|++++.++..+||+..+...... ......+...|++..|-|| |+
T Consensus 288 sr~iLiGiANslDlTdR~LprL~~~~~~~P~~l~F~PYTk~qI~~Il~~rl~~~~t~-~~~~~Aie~~ArKvaa~SG-Dl 365 (529)
T KOG2227|consen 288 SRIILIGIANSLDLTDRFLPRLNLDLTIKPKLLVFPPYTKDQIVEILQQRLSEESTS-IFLNAAIELCARKVAAPSG-DL 365 (529)
T ss_pred ceeeeeeehhhhhHHHHHhhhhhhccCCCCceeeecCCCHHHHHHHHHHHHhccccc-ccchHHHHHHHHHhccCch-hH
Confidence 67899999999776554442 2 23344689999999999999999998875321 2223457788999999886 66
Q ss_pred HHH
Q 035561 669 KLV 671 (979)
Q Consensus 669 ~~L 671 (979)
..+
T Consensus 366 Rka 368 (529)
T KOG2227|consen 366 RKA 368 (529)
T ss_pred HHH
Confidence 644
No 227
>PRK06835 DNA replication protein DnaC; Validated
Probab=98.35 E-value=1.3e-06 Score=98.73 Aligned_cols=69 Identities=25% Similarity=0.341 Sum_probs=48.3
Q ss_pred ceeEecCCCCCChHHHHHHHHHHc---CCCEEEeechhhhhhhhcc---cchhhHHHHHHHHHhcCCeEEEEcCcccc
Q 035561 489 RGVLIVGERGTGKTSLALAIAAEA---RVPVVNVEAQELEAGLWVG---QSASNVRELFQTARDLAPVIIFVEDFDLF 560 (979)
Q Consensus 489 ~gVLL~GPPGTGKTtLArAlA~el---g~~~i~Is~sdL~~~~~vG---~~~~~Ir~lF~~A~~~aP~ILfIDEIDaL 560 (979)
.+++|+||||||||+||.|+|+++ |..+++++..+++. .... .........++... ...+|+|||+...
T Consensus 184 ~~Lll~G~~GtGKThLa~aIa~~l~~~g~~V~y~t~~~l~~-~l~~~~~~~~~~~~~~~~~l~--~~DLLIIDDlG~e 258 (329)
T PRK06835 184 ENLLFYGNTGTGKTFLSNCIAKELLDRGKSVIYRTADELIE-ILREIRFNNDKELEEVYDLLI--NCDLLIIDDLGTE 258 (329)
T ss_pred CcEEEECCCCCcHHHHHHHHHHHHHHCCCeEEEEEHHHHHH-HHHHHHhccchhHHHHHHHhc--cCCEEEEeccCCC
Confidence 689999999999999999999987 78899999988863 2111 00111111223322 4579999999754
No 228
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]
Probab=98.34 E-value=5.5e-06 Score=90.62 Aligned_cols=73 Identities=22% Similarity=0.318 Sum_probs=49.9
Q ss_pred CCceeEecCCCCCChHHHHHHHHHHc---CCCEEEeechhhhhhhhcccchhhHHHHHHHHHhcCCeEEEEcCcccc
Q 035561 487 APRGVLIVGERGTGKTSLALAIAAEA---RVPVVNVEAQELEAGLWVGQSASNVRELFQTARDLAPVIIFVEDFDLF 560 (979)
Q Consensus 487 ~P~gVLL~GPPGTGKTtLArAlA~el---g~~~i~Is~sdL~~~~~vG~~~~~Ir~lF~~A~~~aP~ILfIDEIDaL 560 (979)
.+.+++|+||||||||+||-|+++++ |.+++.++..+++...-..........-+... -....+|+|||+...
T Consensus 104 ~~~nl~l~G~~G~GKThLa~Ai~~~l~~~g~sv~f~~~~el~~~Lk~~~~~~~~~~~l~~~-l~~~dlLIiDDlG~~ 179 (254)
T COG1484 104 RGENLVLLGPPGVGKTHLAIAIGNELLKAGISVLFITAPDLLSKLKAAFDEGRLEEKLLRE-LKKVDLLIIDDIGYE 179 (254)
T ss_pred cCCcEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEEEHHHHHHHHHHHHhcCchHHHHHHH-hhcCCEEEEecccCc
Confidence 45789999999999999999999987 78999999999874321111111111111110 124589999999754
No 229
>PTZ00111 DNA replication licensing factor MCM4; Provisional
Probab=98.31 E-value=1.6e-06 Score=107.65 Aligned_cols=165 Identities=13% Similarity=0.098 Sum_probs=94.1
Q ss_pred CcccCcHHHHHHHHHHHHhhcChhH-----------HHhcCCCCCceeEecCCCCCChHHHHHHHHHHcC-------CCE
Q 035561 455 KDFASVESMREEINEVVAFLQNPSA-----------FQEMGARAPRGVLIVGERGTGKTSLALAIAAEAR-------VPV 516 (979)
Q Consensus 455 ~DIvGleevke~L~eiV~~L~~p~~-----------f~~lG~~~P~gVLL~GPPGTGKTtLArAlA~elg-------~~~ 516 (979)
-.|.|.+.+|+.+.- ..+.-..+ |.....+...+|||.|+||||||.+|+++++... .++
T Consensus 450 P~I~G~e~vK~ailL--~L~gG~~k~~~~~~~~dg~~~~~~iRgdihVLLvGDPGTGKSqLAr~Ih~lspR~~ytsG~~~ 527 (915)
T PTZ00111 450 PSIKARNNVKIGLLC--QLFSGNKNSSDFNKSPDACYKVDNFRGIINVLLCGDPGTAKSQLLHYTHLLSPRSIYTSGKSS 527 (915)
T ss_pred CeEECCHHHHHHHHH--HHhcCCccccccccccccccccccccCCceEEEeCCCCccHHHHHHHHHHhCCccccCCCCCC
Confidence 468999999988742 22211110 0001234456899999999999999999998653 234
Q ss_pred EEeechhhhhhhhcccchhhHH-HHHHHHHhcCCeEEEEcCccccccccccccCCCchhhHHHHHHHHhhhccc------
Q 035561 517 VNVEAQELEAGLWVGQSASNVR-ELFQTARDLAPVIIFVEDFDLFAGVRGQFIHTKQQDHESFINQLLVELDGF------ 589 (979)
Q Consensus 517 i~Is~sdL~~~~~vG~~~~~Ir-~lF~~A~~~aP~ILfIDEIDaL~~~r~~~~~~~~~~~~~iln~LL~~LDg~------ 589 (979)
..+.+.......-...++..++ ..+.. ...++++|||+|.+.. .....|+..|+.-
T Consensus 528 s~vgLTa~~~~~d~~tG~~~le~GaLvl---AdgGtL~IDEidkms~--------------~~Q~aLlEaMEqqtIsI~K 590 (915)
T PTZ00111 528 SSVGLTASIKFNESDNGRAMIQPGAVVL---ANGGVCCIDELDKCHN--------------ESRLSLYEVMEQQTVTIAK 590 (915)
T ss_pred ccccccchhhhcccccCcccccCCcEEE---cCCCeEEecchhhCCH--------------HHHHHHHHHHhCCEEEEec
Confidence 4433333210000000000000 01111 2348999999998731 2223344444321
Q ss_pred -----ccCCeEEEEecccchh-------------hchhhhhcCCceeeE-eccCCCCHHHHHHHHHHHHH
Q 035561 590 -----EKQDGVVLMATTRNIK-------------QIDEALQRPGRMDRI-FNLQKPTQSEREKILRIAAQ 640 (979)
Q Consensus 590 -----~~~~~ViVIATTN~pe-------------~LDpALlRpgRFd~~-I~~~~Pd~eeR~~IL~~~l~ 640 (979)
.-+..+.||||+|... .|+++|++ |||.. +.++.|+.+.=..|-++.++
T Consensus 591 aGi~~tL~ar~rVIAAaNP~~gryd~~~s~~eni~Lp~~LLS--RFDLIf~l~D~~d~~~D~~lA~hI~~ 658 (915)
T PTZ00111 591 AGIVATLKAETAILASCNPINSRYNKNKAVIENINISPSLFT--RFDLIYLVLDHIDQDTDQLISLSIAK 658 (915)
T ss_pred CCcceecCCCeEEEEEcCCcccccCcccCcccccCCChHHhh--hhcEEEEecCCCChHHHHHHHHHHHH
Confidence 1124688999999841 47899999 99977 45577777665566555554
No 230
>KOG1514 consensus Origin recognition complex, subunit 1, and related proteins [Replication, recombination and repair]
Probab=98.29 E-value=6.3e-06 Score=98.67 Aligned_cols=173 Identities=15% Similarity=0.205 Sum_probs=105.0
Q ss_pred eeEecCCCCCChHHHHHHHHHHcC----------CCEEEeechhhhhhh---------hccc------chhhHHHHHHHH
Q 035561 490 GVLIVGERGTGKTSLALAIAAEAR----------VPVVNVEAQELEAGL---------WVGQ------SASNVRELFQTA 544 (979)
Q Consensus 490 gVLL~GPPGTGKTtLArAlA~elg----------~~~i~Is~sdL~~~~---------~vG~------~~~~Ir~lF~~A 544 (979)
.+.+.|-||||||..++.+-.++. .+++.||+..|.... +.|+ +...+..-|...
T Consensus 424 ~mYIsGvPGtGKT~tV~~Vm~~Lq~~s~~~e~p~f~yveINgm~l~~~~~~Y~~I~~~lsg~~~~~~~al~~L~~~f~~~ 503 (767)
T KOG1514|consen 424 CMYISGVPGTGKTATVLEVMKELQTSSAQKELPKFDYVEINGLRLASPREIYEKIWEALSGERVTWDAALEALNFRFTVP 503 (767)
T ss_pred eEEEecCCCCCceehHHHHHHHHHHHHhhcCCCCccEEEEcceeecCHHHHHHHHHHhcccCcccHHHHHHHHHHhhccC
Confidence 578999999999999999988663 578888887664211 1222 122344444422
Q ss_pred H-hcCCeEEEEcCccccccccccccCCCchhhHHHHHHHHhhhcccccCCeEEEEecccch---h-hchhhhhcCCcee-
Q 035561 545 R-DLAPVIIFVEDFDLFAGVRGQFIHTKQQDHESFINQLLVELDGFEKQDGVVLMATTRNI---K-QIDEALQRPGRMD- 618 (979)
Q Consensus 545 ~-~~aP~ILfIDEIDaL~~~r~~~~~~~~~~~~~iln~LL~~LDg~~~~~~ViVIATTN~p---e-~LDpALlRpgRFd- 618 (979)
+ ...+|||+|||+|.|+... +.++..++.--. ..+..++||+..|.. + .|...+-+ |.+
T Consensus 504 k~~~~~~VvLiDElD~Lvtr~-----------QdVlYn~fdWpt--~~~sKLvvi~IaNTmdlPEr~l~nrvsS--Rlg~ 568 (767)
T KOG1514|consen 504 KPKRSTTVVLIDELDILVTRS-----------QDVLYNIFDWPT--LKNSKLVVIAIANTMDLPERLLMNRVSS--RLGL 568 (767)
T ss_pred CCCCCCEEEEeccHHHHhccc-----------HHHHHHHhcCCc--CCCCceEEEEecccccCHHHHhccchhh--hccc
Confidence 2 2357999999999997432 223333332111 234556777666663 3 23334434 655
Q ss_pred eEeccCCCCHHHHHHHHHHHHHhccchhhhhhhhHHHHHHHcCCCCHHHHH--HHHHHHhhhhh
Q 035561 619 RIFNLQKPTQSEREKILRIAAQETMDEELIDLVDWRKVAEKTALLRPIELK--LVPVALEGSAF 680 (979)
Q Consensus 619 ~~I~~~~Pd~eeR~~IL~~~l~~~~~~~l~~dvdL~~LA~~T~GfsgaDL~--~Lv~aa~~aa~ 680 (979)
..+.|.+++.++..+|+...++.. .....--.+-+|++.+..||.--. .+|+++...+-
T Consensus 569 tRi~F~pYth~qLq~Ii~~RL~~~---~~f~~~aielvarkVAavSGDaRraldic~RA~Eia~ 629 (767)
T KOG1514|consen 569 TRICFQPYTHEQLQEIISARLKGL---DAFENKAIELVARKVAAVSGDARRALDICRRAAEIAE 629 (767)
T ss_pred eeeecCCCCHHHHHHHHHHhhcch---hhcchhHHHHHHHHHHhccccHHHHHHHHHHHHHHhh
Confidence 479999999999999999998865 222333345556666666654333 34555444433
No 231
>PF05729 NACHT: NACHT domain
Probab=98.28 E-value=5.9e-06 Score=81.92 Aligned_cols=143 Identities=16% Similarity=0.255 Sum_probs=76.6
Q ss_pred eeEecCCCCCChHHHHHHHHHHcC---------CCEEEeechhhhhhhhc-----------ccchhhHHHHH-HHHHhcC
Q 035561 490 GVLIVGERGTGKTSLALAIAAEAR---------VPVVNVEAQELEAGLWV-----------GQSASNVRELF-QTARDLA 548 (979)
Q Consensus 490 gVLL~GPPGTGKTtLArAlA~elg---------~~~i~Is~sdL~~~~~v-----------G~~~~~Ir~lF-~~A~~~a 548 (979)
-++|+|+||+|||++++.++..+. .-++.+++.+....... ......+...+ ..+....
T Consensus 2 ~l~I~G~~G~GKStll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~ 81 (166)
T PF05729_consen 2 VLWISGEPGSGKSTLLRKLAQQLAEEEPPPSKFPYPFFFSLRDISDSNNSRSLADLLFDQLPESIAPIEELLQELLEKNK 81 (166)
T ss_pred EEEEECCCCCChHHHHHHHHHHHHhcCcccccceEEEEEeehhhhhccccchHHHHHHHhhccchhhhHHHHHHHHHcCC
Confidence 478999999999999999998762 12334444443211100 01111111111 2223445
Q ss_pred CeEEEEcCccccccccccccCCCchhhHHHHHHHHhhhcccccCCeEEEEecccchhhchhhhhcCCceeeEeccCCCCH
Q 035561 549 PVIIFVEDFDLFAGVRGQFIHTKQQDHESFINQLLVELDGFEKQDGVVLMATTRNIKQIDEALQRPGRMDRIFNLQKPTQ 628 (979)
Q Consensus 549 P~ILfIDEIDaL~~~r~~~~~~~~~~~~~iln~LL~~LDg~~~~~~ViVIATTN~pe~LDpALlRpgRFd~~I~~~~Pd~ 628 (979)
+.+|+||.+|.+...... .........+..++.. ....+-.++|.+.+.....+...+... ..+.++..+.
T Consensus 82 ~~llilDglDE~~~~~~~---~~~~~~~~~l~~l~~~--~~~~~~~liit~r~~~~~~~~~~~~~~----~~~~l~~~~~ 152 (166)
T PF05729_consen 82 RVLLILDGLDELEEQDQS---QERQRLLDLLSQLLPQ--ALPPGVKLIITSRPRAFPDLRRRLKQA----QILELEPFSE 152 (166)
T ss_pred ceEEEEechHhcccchhh---hHHHHHHHHHHHHhhh--ccCCCCeEEEEEcCChHHHHHHhcCCC----cEEEECCCCH
Confidence 789999999998642211 0011122233333322 012222333333333333344444332 5788999999
Q ss_pred HHHHHHHHHHHHh
Q 035561 629 SEREKILRIAAQE 641 (979)
Q Consensus 629 eeR~~IL~~~l~~ 641 (979)
+++.++++.++++
T Consensus 153 ~~~~~~~~~~f~~ 165 (166)
T PF05729_consen 153 EDIKQYLRKYFSN 165 (166)
T ss_pred HHHHHHHHHHhhc
Confidence 9999999988753
No 232
>PRK06921 hypothetical protein; Provisional
Probab=98.26 E-value=2.6e-06 Score=93.72 Aligned_cols=68 Identities=22% Similarity=0.272 Sum_probs=46.3
Q ss_pred CceeEecCCCCCChHHHHHHHHHHc----CCCEEEeechhhhhhhhcccchhhHHHHHHHHHhcCCeEEEEcCccc
Q 035561 488 PRGVLIVGERGTGKTSLALAIAAEA----RVPVVNVEAQELEAGLWVGQSASNVRELFQTARDLAPVIIFVEDFDL 559 (979)
Q Consensus 488 P~gVLL~GPPGTGKTtLArAlA~el----g~~~i~Is~sdL~~~~~vG~~~~~Ir~lF~~A~~~aP~ILfIDEIDa 559 (979)
..+++|+||||||||+|+.|+|+++ +..+++++..+++.. ... ........++.. ....+|+|||++.
T Consensus 117 ~~~l~l~G~~G~GKThLa~aia~~l~~~~g~~v~y~~~~~l~~~-l~~-~~~~~~~~~~~~--~~~dlLiIDDl~~ 188 (266)
T PRK06921 117 KNSIALLGQPGSGKTHLLTAAANELMRKKGVPVLYFPFVEGFGD-LKD-DFDLLEAKLNRM--KKVEVLFIDDLFK 188 (266)
T ss_pred CCeEEEECCCCCcHHHHHHHHHHHHhhhcCceEEEEEHHHHHHH-HHH-HHHHHHHHHHHh--cCCCEEEEecccc
Confidence 4689999999999999999999986 677888888776522 111 111112222222 2468999999953
No 233
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=98.26 E-value=4e-06 Score=80.65 Aligned_cols=99 Identities=25% Similarity=0.342 Sum_probs=58.9
Q ss_pred CceeEecCCCCCChHHHHHHHHHHc--------CCCEEEeechhhhhh-h------------hcc-cchhhHHHHHHHH-
Q 035561 488 PRGVLIVGERGTGKTSLALAIAAEA--------RVPVVNVEAQELEAG-L------------WVG-QSASNVRELFQTA- 544 (979)
Q Consensus 488 P~gVLL~GPPGTGKTtLArAlA~el--------g~~~i~Is~sdL~~~-~------------~vG-~~~~~Ir~lF~~A- 544 (979)
.+.++++||||+|||++++.++... ..+++.+++...... . ..+ .+...+.+.+...
T Consensus 4 ~~~~~i~G~~G~GKT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~l~~~~~~~l 83 (131)
T PF13401_consen 4 QRILVISGPPGSGKTTLIKRLARQLNAEAEIKNHPDVIYVNCPSSRTPRDFAQEILEALGLPLKSRQTSDELRSLLIDAL 83 (131)
T ss_dssp ---EEEEE-TTSSHHHHHHHHHHHHHHHHHHCCCEEEEEEEHHHHSSHHHHHHHHHHHHT-SSSSTS-HHHHHHHHHHHH
T ss_pred CcccEEEcCCCCCHHHHHHHHHHHhHHhhhccCCCcEEEEEeCCCCCHHHHHHHHHHHhCccccccCCHHHHHHHHHHHH
Confidence 4568999999999999999999987 788888887654210 0 001 1223333333333
Q ss_pred HhcCCeEEEEcCccccccccccccCCCchhhHHHHHHHHhhhcccccCCeEEEEecc
Q 035561 545 RDLAPVIIFVEDFDLFAGVRGQFIHTKQQDHESFINQLLVELDGFEKQDGVVLMATT 601 (979)
Q Consensus 545 ~~~aP~ILfIDEIDaL~~~r~~~~~~~~~~~~~iln~LL~~LDg~~~~~~ViVIATT 601 (979)
......+|+|||+|.+. ....++.|...++ ..+-.++++++.
T Consensus 84 ~~~~~~~lviDe~~~l~-------------~~~~l~~l~~l~~--~~~~~vvl~G~~ 125 (131)
T PF13401_consen 84 DRRRVVLLVIDEADHLF-------------SDEFLEFLRSLLN--ESNIKVVLVGTP 125 (131)
T ss_dssp HHCTEEEEEEETTHHHH-------------THHHHHHHHHHTC--SCBEEEEEEESS
T ss_pred HhcCCeEEEEeChHhcC-------------CHHHHHHHHHHHh--CCCCeEEEEECh
Confidence 34334599999999872 1445556655555 233345555554
No 234
>KOG1051 consensus Chaperone HSP104 and related ATP-dependent Clp proteases [Posttranslational modification, protein turnover, chaperones]
Probab=98.24 E-value=5.2e-06 Score=103.04 Aligned_cols=127 Identities=19% Similarity=0.274 Sum_probs=91.8
Q ss_pred CcccCcHHHHHHHHHHHHhhcChhHHHhcCC---CCCceeEecCCCCCChHHHHHHHHHHc---CCCEEEeechhhhh--
Q 035561 455 KDFASVESMREEINEVVAFLQNPSAFQEMGA---RAPRGVLIVGERGTGKTSLALAIAAEA---RVPVVNVEAQELEA-- 526 (979)
Q Consensus 455 ~DIvGleevke~L~eiV~~L~~p~~f~~lG~---~~P~gVLL~GPPGTGKTtLArAlA~el---g~~~i~Is~sdL~~-- 526 (979)
+.|+|++++...+.+.|..-+. |. .++..+||.||.|+|||-||+++|..+ .-.++.++++++..
T Consensus 562 ~~V~gQ~eAv~aIa~AI~~sr~-------gl~~~~~~awflflGpdgvGKt~lAkaLA~~~Fgse~~~IriDmse~~evs 634 (898)
T KOG1051|consen 562 ERVIGQDEAVAAIAAAIRRSRA-------GLKDPNPDAWFLFLGPDGVGKTELAKALAEYVFGSEENFIRLDMSEFQEVS 634 (898)
T ss_pred hhccchHHHHHHHHHHHHhhhc-------ccCCCCCCeEEEEECCCchhHHHHHHHHHHHHcCCccceEEechhhhhhhh
Confidence 3588999888888877755322 22 345679999999999999999999987 46899999986421
Q ss_pred ----h--hhcccchhhHHHHHHHHHhcCCeEEEEcCccccccccccccCCCchhhHHHHHHHHhhhcccc---------c
Q 035561 527 ----G--LWVGQSASNVRELFQTARDLAPVIIFVEDFDLFAGVRGQFIHTKQQDHESFINQLLVELDGFE---------K 591 (979)
Q Consensus 527 ----~--~~vG~~~~~Ir~lF~~A~~~aP~ILfIDEIDaL~~~r~~~~~~~~~~~~~iln~LL~~LDg~~---------~ 591 (979)
+ .|+|..+. -.+.+..+...-+||+|||||.- +..+++.|++.+|... +
T Consensus 635 kligsp~gyvG~e~g--g~LteavrrrP~sVVLfdeIEkA--------------h~~v~n~llq~lD~GrltDs~Gr~Vd 698 (898)
T KOG1051|consen 635 KLIGSPPGYVGKEEG--GQLTEAVKRRPYSVVLFEEIEKA--------------HPDVLNILLQLLDRGRLTDSHGREVD 698 (898)
T ss_pred hccCCCcccccchhH--HHHHHHHhcCCceEEEEechhhc--------------CHHHHHHHHHHHhcCccccCCCcEee
Confidence 1 14554443 35566667766799999999843 5667788888887641 1
Q ss_pred CCeEEEEecccch
Q 035561 592 QDGVVLMATTRNI 604 (979)
Q Consensus 592 ~~~ViVIATTN~p 604 (979)
-.+++||.|+|.-
T Consensus 699 ~kN~I~IMTsn~~ 711 (898)
T KOG1051|consen 699 FKNAIFIMTSNVG 711 (898)
T ss_pred ccceEEEEecccc
Confidence 2468999999873
No 235
>TIGR02915 PEP_resp_reg putative PEP-CTERM system response regulator. Members of this protein family share full-length homology with (but do not include) the acetoacetate metabolism regulatory protein AtoC. These proteins have a Fis family DNA binding sequence (pfam02954), a response regulator receiver domain (pfam00072), and sigma-54 interaction domain (pfam00158).
Probab=98.24 E-value=3.9e-06 Score=97.96 Aligned_cols=96 Identities=20% Similarity=0.285 Sum_probs=61.6
Q ss_pred CCCcccCcHHHHHHHHHHHHhhcChhHHHhcCCCCCceeEecCCCCCChHHHHHHHHHHc---CCCEEEeechhhhhhhh
Q 035561 453 PLKDFASVESMREEINEVVAFLQNPSAFQEMGARAPRGVLIVGERGTGKTSLALAIAAEA---RVPVVNVEAQELEAGLW 529 (979)
Q Consensus 453 ~f~DIvGleevke~L~eiV~~L~~p~~f~~lG~~~P~gVLL~GPPGTGKTtLArAlA~el---g~~~i~Is~sdL~~~~~ 529 (979)
.+.+++|.....+.+.+.+..+ .....+++|+|++||||+++|+++.... +.||+.++|..+.....
T Consensus 137 ~~~~lig~s~~~~~l~~~i~~~----------a~~~~~vli~Ge~GtGK~~lA~~ih~~s~~~~~~~v~v~c~~~~~~~~ 206 (445)
T TIGR02915 137 ALRGLITSSPGMQKICRTIEKI----------APSDITVLLLGESGTGKEVLARALHQLSDRKDKRFVAINCAAIPENLL 206 (445)
T ss_pred cccceeecCHHHHHHHHHHHHH----------hCCCCCEEEECCCCcCHHHHHHHHHHhCCcCCCCeEEEECCCCChHHH
Confidence 4567888776666665544322 1233569999999999999999998876 46999999987632210
Q ss_pred ----cccch-------hhHHHHHHHHHhcCCeEEEEcCccccc
Q 035561 530 ----VGQSA-------SNVRELFQTARDLAPVIIFVEDFDLFA 561 (979)
Q Consensus 530 ----vG~~~-------~~Ir~lF~~A~~~aP~ILfIDEIDaL~ 561 (979)
.|... ......|..| .+++|||||++.|.
T Consensus 207 ~~~lfg~~~~~~~~~~~~~~g~~~~a---~~gtl~l~~i~~l~ 246 (445)
T TIGR02915 207 ESELFGYEKGAFTGAVKQTLGKIEYA---HGGTLFLDEIGDLP 246 (445)
T ss_pred HHHhcCCCCCCcCCCccCCCCceeEC---CCCEEEEechhhCC
Confidence 11000 0011122222 45899999999883
No 236
>PRK13765 ATP-dependent protease Lon; Provisional
Probab=98.20 E-value=7e-06 Score=100.04 Aligned_cols=54 Identities=28% Similarity=0.374 Sum_probs=44.0
Q ss_pred ccCCCCCCCCcccCcHHHHHHHHHHHHhhcChhHHHhcCCCCCceeEecCCCCCChHHHHHHHHHHcC
Q 035561 446 RVKNPPIPLKDFASVESMREEINEVVAFLQNPSAFQEMGARAPRGVLIVGERGTGKTSLALAIAAEAR 513 (979)
Q Consensus 446 ~v~~~~~~f~DIvGleevke~L~eiV~~L~~p~~f~~lG~~~P~gVLL~GPPGTGKTtLArAlA~elg 513 (979)
.+..|+..|++|+|++++++.|...+. .+.+++|+||||||||++|+++++.+.
T Consensus 22 ~~~~~~~~~~~vigq~~a~~~L~~~~~--------------~~~~~l~~G~~G~GKttla~~l~~~l~ 75 (637)
T PRK13765 22 DIEVPERLIDQVIGQEHAVEVIKKAAK--------------QRRHVMMIGSPGTGKSMLAKAMAELLP 75 (637)
T ss_pred ecccCcccHHHcCChHHHHHHHHHHHH--------------hCCeEEEECCCCCcHHHHHHHHHHHcC
Confidence 346678899999999999998875442 123699999999999999999998654
No 237
>PF12775 AAA_7: P-loop containing dynein motor region D3; PDB: 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=98.19 E-value=3.6e-06 Score=92.94 Aligned_cols=139 Identities=21% Similarity=0.377 Sum_probs=80.6
Q ss_pred CceeEecCCCCCChHHHHHHHHHHcCC-C--EEEeechhhhhhhhcccchhhHHHHHHHH----H-------hcCCeEEE
Q 035561 488 PRGVLIVGERGTGKTSLALAIAAEARV-P--VVNVEAQELEAGLWVGQSASNVRELFQTA----R-------DLAPVIIF 553 (979)
Q Consensus 488 P~gVLL~GPPGTGKTtLArAlA~elg~-~--~i~Is~sdL~~~~~vG~~~~~Ir~lF~~A----~-------~~aP~ILf 553 (979)
.+.+||+||+|||||++++..-..+.- . ...++++... +...+..+.+.. + ....+|+|
T Consensus 33 ~~pvLl~G~~GtGKT~li~~~l~~l~~~~~~~~~~~~s~~T-------ts~~~q~~ie~~l~k~~~~~~gP~~~k~lv~f 105 (272)
T PF12775_consen 33 GRPVLLVGPSGTGKTSLIQNFLSSLDSDKYLVITINFSAQT-------TSNQLQKIIESKLEKRRGRVYGPPGGKKLVLF 105 (272)
T ss_dssp TEEEEEESSTTSSHHHHHHHHHHCSTTCCEEEEEEES-TTH-------HHHHHHHCCCTTECECTTEEEEEESSSEEEEE
T ss_pred CCcEEEECCCCCchhHHHHhhhccCCccccceeEeeccCCC-------CHHHHHHHHhhcEEcCCCCCCCCCCCcEEEEE
Confidence 457999999999999999988877643 2 2334444322 112222222211 1 12348999
Q ss_pred EcCccccccccccccCCCchhhHHHHHHHHhhhccc-c-------cCCeEEEEecccchh---hchhhhhcCCceeeEec
Q 035561 554 VEDFDLFAGVRGQFIHTKQQDHESFINQLLVELDGF-E-------KQDGVVLMATTRNIK---QIDEALQRPGRMDRIFN 622 (979)
Q Consensus 554 IDEIDaL~~~r~~~~~~~~~~~~~iln~LL~~LDg~-~-------~~~~ViVIATTN~pe---~LDpALlRpgRFd~~I~ 622 (979)
|||+..-. .+. .+.+..-..+.+++.. .|+ . .-..+.++||+|.+. .|++.++| .| ..+.
T Consensus 106 iDDlN~p~--~d~---ygtq~~iElLRQ~i~~-~g~yd~~~~~~~~i~~i~~vaa~~p~~Gr~~is~R~~r--~f-~i~~ 176 (272)
T PF12775_consen 106 IDDLNMPQ--PDK---YGTQPPIELLRQLIDY-GGFYDRKKLEWKSIEDIQFVAAMNPTGGRNPISPRFLR--HF-NILN 176 (272)
T ss_dssp EETTT-S-----T---TS--HHHHHHHHHHHC-SEEECTTTTEEEEECSEEEEEEESSTTT--SHHHHHHT--TE-EEEE
T ss_pred ecccCCCC--CCC---CCCcCHHHHHHHHHHh-cCcccCCCcEEEEEeeeEEEEecCCCCCCCCCChHHhh--he-EEEE
Confidence 99997432 221 1222233455555432 222 1 113577888888633 58999998 77 5899
Q ss_pred cCCCCHHHHHHHHHHHHHhc
Q 035561 623 LQKPTQSEREKILRIAAQET 642 (979)
Q Consensus 623 ~~~Pd~eeR~~IL~~~l~~~ 642 (979)
++.|+.+....|+...+...
T Consensus 177 ~~~p~~~sl~~If~~il~~~ 196 (272)
T PF12775_consen 177 IPYPSDESLNTIFSSILQSH 196 (272)
T ss_dssp ----TCCHHHHHHHHHHHHH
T ss_pred ecCCChHHHHHHHHHHHhhh
Confidence 99999999999999888754
No 238
>PRK13406 bchD magnesium chelatase subunit D; Provisional
Probab=98.17 E-value=1.2e-05 Score=97.20 Aligned_cols=200 Identities=14% Similarity=0.144 Sum_probs=117.2
Q ss_pred ceeEecCCCCCChHHHHHHHHHHcC--CCEEEeechhhhhhhhcccc--hhhH--------HHHHHHHHhcCCeEEEEcC
Q 035561 489 RGVLIVGERGTGKTSLALAIAAEAR--VPVVNVEAQELEAGLWVGQS--ASNV--------RELFQTARDLAPVIIFVED 556 (979)
Q Consensus 489 ~gVLL~GPPGTGKTtLArAlA~elg--~~~i~Is~sdL~~~~~vG~~--~~~I--------r~lF~~A~~~aP~ILfIDE 556 (979)
.||||.|++|||||+++++++.-+. .||+.+..+--. ...+|.. +..+ ..++..| ..+||||||
T Consensus 26 gGv~i~g~~G~~ks~~~r~l~~llp~~~p~r~~p~~~t~-~~L~Gg~Dl~~~l~~g~~~~~pGlla~A---h~GvL~lDe 101 (584)
T PRK13406 26 GGVVLRARAGPVRDRWLAALRALLPAGTPLRRLPPGIAD-DRLLGGLDLAATLRAGRPVAQRGLLAEA---DGGVLVLAM 101 (584)
T ss_pred ceEEEEcCCCcHHHHHHHHHHHhcCCCCCcccCCCCCcH-HHccCCchHHhHhhcCCcCCCCCceeec---cCCEEEecC
Confidence 5899999999999999999999875 488776543221 2233322 1111 1112222 248999999
Q ss_pred ccccccccccccCCCchhhHHHHHHHHhhhccc-----------ccCCeEEEEecccch---hhchhhhhcCCceeeEec
Q 035561 557 FDLFAGVRGQFIHTKQQDHESFINQLLVELDGF-----------EKQDGVVLMATTRNI---KQIDEALQRPGRMDRIFN 622 (979)
Q Consensus 557 IDaL~~~r~~~~~~~~~~~~~iln~LL~~LDg~-----------~~~~~ViVIATTN~p---e~LDpALlRpgRFd~~I~ 622 (979)
+..+ ...+++.|+.-|+.= .-...+++|||-|.. ..|+++++. ||+..+.
T Consensus 102 ~n~~--------------~~~~~~aLleame~G~vtIeR~G~s~~~Pa~F~LIat~~~~~~~~~L~~~lLD--Rf~l~v~ 165 (584)
T PRK13406 102 AERL--------------EPGTAARLAAALDTGEVRLERDGLALRLPARFGLVALDEGAEEDERAPAALAD--RLAFHLD 165 (584)
T ss_pred cccC--------------CHHHHHHHHHHHhCCcEEEEECCcEEecCCCcEEEecCCChhcccCCCHHhHh--heEEEEE
Confidence 9766 456777888877641 112457888874432 358999999 9999999
Q ss_pred cCCCCHHHHHHHHHHHHHhccchhhhhhhhHHHHHHHcCCCCHHHHHHHHHHHhhhhhccCCCChHHHhhhcchhhhccC
Q 035561 623 LQKPTQSEREKILRIAAQETMDEELIDLVDWRKVAEKTALLRPIELKLVPVALEGSAFRSKFLDTDELMSYCGWFATFSG 702 (979)
Q Consensus 623 ~~~Pd~eeR~~IL~~~l~~~~~~~l~~dvdL~~LA~~T~GfsgaDL~~Lv~aa~~aa~r~~~~s~~ei~~~~d~~aAl~~ 702 (979)
++.|+..+..+ ...+..+|...-.. +....++.+.+...|.....+.
T Consensus 166 v~~~~~~~~~~---------------------------~~~~~~~I~~AR~r-----l~~v~v~~~~l~~i~~~~~~~g- 212 (584)
T PRK13406 166 LDGLALRDARE---------------------------IPIDADDIAAARAR-----LPAVGPPPEAIAALCAAAAALG- 212 (584)
T ss_pred cCCCChHHhcc---------------------------cCCCHHHHHHHHHH-----HccCCCCHHHHHHHHHHHHHhC-
Confidence 99998765321 00111122221111 1122233333333333332221
Q ss_pred CCccccccchhhhhhhhhhhhh-cCccccHHHHHHHHHhhhc
Q 035561 703 VVPKWFRKTKIVKKISRMLVDH-LGLTLTKEDLQNVVDLMEP 743 (979)
Q Consensus 703 ~~P~~lR~~~llk~~~v~w~Di-GGl~vtkedL~eAIe~~~k 743 (979)
-.+.|....+-+..+..++. |...++.+||.+++..+..
T Consensus 213 --v~S~Ra~i~llraARa~AaL~Gr~~V~~~dv~~Aa~lvL~ 252 (584)
T PRK13406 213 --IASLRAPLLALRAARAAAALAGRTAVEEEDLALAARLVLA 252 (584)
T ss_pred --CCCcCHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHH
Confidence 11335544444445555555 4568889999999986543
No 239
>PRK10923 glnG nitrogen regulation protein NR(I); Provisional
Probab=98.16 E-value=1.1e-05 Score=94.96 Aligned_cols=96 Identities=22% Similarity=0.392 Sum_probs=62.1
Q ss_pred CCCcccCcHHHHHHHHHHHHhhcChhHHHhcCCCCCceeEecCCCCCChHHHHHHHHHHc---CCCEEEeechhhhhhh-
Q 035561 453 PLKDFASVESMREEINEVVAFLQNPSAFQEMGARAPRGVLIVGERGTGKTSLALAIAAEA---RVPVVNVEAQELEAGL- 528 (979)
Q Consensus 453 ~f~DIvGleevke~L~eiV~~L~~p~~f~~lG~~~P~gVLL~GPPGTGKTtLArAlA~el---g~~~i~Is~sdL~~~~- 528 (979)
.+.+++|.......+.+.+..+ .+....+|++|++|||||++|+++.... +.||+.++|..+....
T Consensus 136 ~~~~lig~s~~~~~l~~~~~~~----------~~~~~~vli~Ge~GtGK~~lA~~ih~~s~~~~~~~i~i~c~~~~~~~~ 205 (469)
T PRK10923 136 PTTDIIGEAPAMQDVFRIIGRL----------SRSSISVLINGESGTGKELVAHALHRHSPRAKAPFIALNMAAIPKDLI 205 (469)
T ss_pred ccccceecCHHHHHHHHHHHHH----------hccCCeEEEEeCCCCcHHHHHHHHHhcCCCCCCCeEeeeCCCCCHHHH
Confidence 4678888876666665444322 1234569999999999999999999986 4799999998763221
Q ss_pred ---hcccchh-------hHHHHHHHHHhcCCeEEEEcCccccc
Q 035561 529 ---WVGQSAS-------NVRELFQTARDLAPVIIFVEDFDLFA 561 (979)
Q Consensus 529 ---~vG~~~~-------~Ir~lF~~A~~~aP~ILfIDEIDaL~ 561 (979)
..|.... .....|..| .++.|||||+|.|.
T Consensus 206 ~~~lfg~~~g~~~~~~~~~~g~~~~a---~~Gtl~l~~i~~l~ 245 (469)
T PRK10923 206 ESELFGHEKGAFTGANTIRQGRFEQA---DGGTLFLDEIGDMP 245 (469)
T ss_pred HHHhcCCCCCCCCCCCcCCCCCeeEC---CCCEEEEeccccCC
Confidence 1111100 001112222 35789999999883
No 240
>KOG2680 consensus DNA helicase TIP49, TBP-interacting protein [Transcription]
Probab=98.12 E-value=3.9e-05 Score=84.25 Aligned_cols=70 Identities=23% Similarity=0.450 Sum_probs=53.3
Q ss_pred CCCCCCCcccCcHHHHHHHHHHHHhhcChhHHHhcCCCCCceeEecCCCCCChHHHHHHHHHHcC--CCEEEeechhhh
Q 035561 449 NPPIPLKDFASVESMREEINEVVAFLQNPSAFQEMGARAPRGVLIVGERGTGKTSLALAIAAEAR--VPVVNVEAQELE 525 (979)
Q Consensus 449 ~~~~~f~DIvGleevke~L~eiV~~L~~p~~f~~lG~~~P~gVLL~GPPGTGKTtLArAlA~elg--~~~i~Is~sdL~ 525 (979)
.|...-+.++|+-.+++..--++...+. |--..+.+|+.|+||||||.+|-.+++.+| .||..++++++.
T Consensus 34 e~~~~s~GmVGQ~~AR~Aagvi~kmi~e-------gkiaGraiLiaG~pgtGKtAiAmg~sksLG~~tpF~~i~gSEI~ 105 (454)
T KOG2680|consen 34 EPRYVSEGMVGQVKARKAAGVILKMIRE-------GKIAGRAILIAGQPGTGKTAIAMGMSKSLGDDTPFTSISGSEIY 105 (454)
T ss_pred CcccccccchhhHHHHHHhHHHHHHHHc-------CcccceEEEEecCCCCCceeeeeehhhhhCCCCceeeeecceee
Confidence 3445567889988887776555544433 323457899999999999999999999997 699999888764
No 241
>PF12774 AAA_6: Hydrolytic ATP binding site of dynein motor region D1; PDB: 3VKH_A 3VKG_A 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A.
Probab=98.11 E-value=1.7e-05 Score=85.74 Aligned_cols=131 Identities=17% Similarity=0.166 Sum_probs=76.3
Q ss_pred CceeEecCCCCCChHHHHHHHHHHcCCCEEEeechhhhhhhhcccchhhHHHHHHHHHhcCCeEEEEcCccccccccccc
Q 035561 488 PRGVLIVGERGTGKTSLALAIAAEARVPVVNVEAQELEAGLWVGQSASNVRELFQTARDLAPVIIFVEDFDLFAGVRGQF 567 (979)
Q Consensus 488 P~gVLL~GPPGTGKTtLArAlA~elg~~~i~Is~sdL~~~~~vG~~~~~Ir~lF~~A~~~aP~ILfIDEIDaL~~~r~~~ 567 (979)
..+-.++||+|||||..+|.+|..+|.+++..+|++-. ....+..+|.-+.. ..+-+++||++.|-...
T Consensus 32 ~~~~~~~GpagtGKtetik~La~~lG~~~~vfnc~~~~-------~~~~l~ril~G~~~-~GaW~cfdefnrl~~~v--- 100 (231)
T PF12774_consen 32 NLGGALSGPAGTGKTETIKDLARALGRFVVVFNCSEQM-------DYQSLSRILKGLAQ-SGAWLCFDEFNRLSEEV--- 100 (231)
T ss_dssp TTEEEEESSTTSSHHHHHHHHHHCTT--EEEEETTSSS--------HHHHHHHHHHHHH-HT-EEEEETCCCSSHHH---
T ss_pred CCCCCCcCCCCCCchhHHHHHHHHhCCeEEEecccccc-------cHHHHHHHHHHHhh-cCchhhhhhhhhhhHHH---
Confidence 35678999999999999999999999999999998754 23456677777665 47899999999873110
Q ss_pred cCCCchhhHHHHHHHHhhhcc-----------cccCCeEEEEecccc----hhhchhhhhcCCceeeEeccCCCCHHHHH
Q 035561 568 IHTKQQDHESFINQLLVELDG-----------FEKQDGVVLMATTRN----IKQIDEALQRPGRMDRIFNLQKPTQSERE 632 (979)
Q Consensus 568 ~~~~~~~~~~iln~LL~~LDg-----------~~~~~~ViVIATTN~----pe~LDpALlRpgRFd~~I~~~~Pd~eeR~ 632 (979)
-+...+.+..+...+.. +.-++..-++.|.|. -..||+.|+. .| |.+.+..||.....
T Consensus 101 ----LS~i~~~i~~i~~al~~~~~~~~~~g~~i~l~~~~~iFiT~np~y~gr~~LP~nLk~--lF-Rpvam~~PD~~~I~ 173 (231)
T PF12774_consen 101 ----LSVISQQIQSIQDALRAKQKSFTLEGQEIKLNPNCGIFITMNPGYAGRSELPENLKA--LF-RPVAMMVPDLSLIA 173 (231)
T ss_dssp ----HHHHHHHHHHHHHHHHCTSSEEEETTCEEE--TT-EEEEEE-B-CCCC--S-HHHCT--TE-EEEE--S--HHHHH
T ss_pred ----HHHHHHHHHHHHHhhcccccccccCCCEEEEccceeEEEeeccccCCcccCCHhHHH--Hh-heeEEeCCCHHHHH
Confidence 00111122222222111 011123345556664 3578999887 55 78899999977665
Q ss_pred HHHH
Q 035561 633 KILR 636 (979)
Q Consensus 633 ~IL~ 636 (979)
+++-
T Consensus 174 ei~L 177 (231)
T PF12774_consen 174 EILL 177 (231)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 5543
No 242
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=98.11 E-value=3.3e-05 Score=100.77 Aligned_cols=159 Identities=18% Similarity=0.289 Sum_probs=91.6
Q ss_pred CCCCCCcccCcHHHHHHHHHHHHhhcChhHHHhcCCCCCceeEecCCCCCChHHHHHHHHHHcCCCE---EEeechhhh-
Q 035561 450 PPIPLKDFASVESMREEINEVVAFLQNPSAFQEMGARAPRGVLIVGERGTGKTSLALAIAAEARVPV---VNVEAQELE- 525 (979)
Q Consensus 450 ~~~~f~DIvGleevke~L~eiV~~L~~p~~f~~lG~~~P~gVLL~GPPGTGKTtLArAlA~elg~~~---i~Is~sdL~- 525 (979)
+...+++++|.++..++|...+.. +....+-+-|+|++|+||||+|+++++....+| +.++...+.
T Consensus 179 ~~~~~~~~vG~~~~l~~l~~lL~l----------~~~~~~vvgI~G~gGiGKTTLA~~l~~~l~~~F~g~vfv~~~~v~~ 248 (1153)
T PLN03210 179 PSNDFEDFVGIEDHIAKMSSLLHL----------ESEEVRMVGIWGSSGIGKTTIARALFSRLSRQFQSSVFIDRAFISK 248 (1153)
T ss_pred cCcccccccchHHHHHHHHHHHcc----------ccCceEEEEEEcCCCCchHHHHHHHHHHHhhcCCeEEEeecccccc
Confidence 345689999999888877755421 223345688999999999999999998875432 111110000
Q ss_pred -hhhhcc-----------cchhhHH-------------HHHHHHHhcCCeEEEEcCccccccccccccCCCchhhHHHHH
Q 035561 526 -AGLWVG-----------QSASNVR-------------ELFQTARDLAPVIIFVEDFDLFAGVRGQFIHTKQQDHESFIN 580 (979)
Q Consensus 526 -~~~~vG-----------~~~~~Ir-------------~lF~~A~~~aP~ILfIDEIDaL~~~r~~~~~~~~~~~~~iln 580 (979)
...+.. .....+. ......-...+.+|+||+++.. ..+.
T Consensus 249 ~~~~~~~~~~~~~~~~~~l~~~~l~~il~~~~~~~~~~~~~~~~L~~krvLLVLDdv~~~----------------~~l~ 312 (1153)
T PLN03210 249 SMEIYSSANPDDYNMKLHLQRAFLSEILDKKDIKIYHLGAMEERLKHRKVLIFIDDLDDQ----------------DVLD 312 (1153)
T ss_pred chhhcccccccccchhHHHHHHHHHHHhCCCCcccCCHHHHHHHHhCCeEEEEEeCCCCH----------------HHHH
Confidence 000000 0000000 1112222346789999998632 2233
Q ss_pred HHHhhhcccccCCeEEEEecccchhhchhhhhcCCceeeEeccCCCCHHHHHHHHHHHHHh
Q 035561 581 QLLVELDGFEKQDGVVLMATTRNIKQIDEALQRPGRMDRIFNLQKPTQSEREKILRIAAQE 641 (979)
Q Consensus 581 ~LL~~LDg~~~~~~ViVIATTN~pe~LDpALlRpgRFd~~I~~~~Pd~eeR~~IL~~~l~~ 641 (979)
.+....+.+. .+-.||.||.+.+.+. ....++.+.++.|+.++..+++..++-+
T Consensus 313 ~L~~~~~~~~--~GsrIIiTTrd~~vl~-----~~~~~~~~~v~~l~~~ea~~LF~~~Af~ 366 (1153)
T PLN03210 313 ALAGQTQWFG--SGSRIIVITKDKHFLR-----AHGIDHIYEVCLPSNELALEMFCRSAFK 366 (1153)
T ss_pred HHHhhCccCC--CCcEEEEEeCcHHHHH-----hcCCCeEEEecCCCHHHHHHHHHHHhcC
Confidence 4433333232 2334555677644432 2245688999999999999999887753
No 243
>PRK11361 acetoacetate metabolism regulatory protein AtoC; Provisional
Probab=98.09 E-value=2.6e-05 Score=91.30 Aligned_cols=96 Identities=23% Similarity=0.320 Sum_probs=59.5
Q ss_pred CCCcccCcHHHHHHHHHHHHhhcChhHHHhcCCCCCceeEecCCCCCChHHHHHHHHHHc---CCCEEEeechhhhhhh-
Q 035561 453 PLKDFASVESMREEINEVVAFLQNPSAFQEMGARAPRGVLIVGERGTGKTSLALAIAAEA---RVPVVNVEAQELEAGL- 528 (979)
Q Consensus 453 ~f~DIvGleevke~L~eiV~~L~~p~~f~~lG~~~P~gVLL~GPPGTGKTtLArAlA~el---g~~~i~Is~sdL~~~~- 528 (979)
.+.+++|.......+.+.+..+. .....+|++|++||||+++|+++.... +.||+.++|..+....
T Consensus 141 ~~~~ii~~S~~~~~~~~~~~~~a----------~~~~~vli~Ge~GtGK~~lA~~ih~~s~~~~~~~~~i~c~~~~~~~~ 210 (457)
T PRK11361 141 QWGHILTNSPAMMDICKDTAKIA----------LSQASVLISGESGTGKELIARAIHYNSRRAKGPFIKVNCAALPESLL 210 (457)
T ss_pred cccceecccHHHhHHHHHHHHHc----------CCCcEEEEEcCCCccHHHHHHHHHHhCCCCCCCeEEEECCCCCHHHH
Confidence 34567777655555443332221 223469999999999999999998765 5799999998763211
Q ss_pred ---hcccchh-------hHHHHHHHHHhcCCeEEEEcCccccc
Q 035561 529 ---WVGQSAS-------NVRELFQTARDLAPVIIFVEDFDLFA 561 (979)
Q Consensus 529 ---~vG~~~~-------~Ir~lF~~A~~~aP~ILfIDEIDaL~ 561 (979)
..|.... .....|..| ..++|||||+|.+.
T Consensus 211 ~~~lfg~~~~~~~~~~~~~~g~~~~a---~~gtl~ld~i~~l~ 250 (457)
T PRK11361 211 ESELFGHEKGAFTGAQTLRQGLFERA---NEGTLLLDEIGEMP 250 (457)
T ss_pred HHHhcCCCCCCCCCCCCCCCCceEEC---CCCEEEEechhhCC
Confidence 1111000 001122222 35899999999883
No 244
>TIGR01818 ntrC nitrogen regulation protein NR(I). This model represents NtrC, a DNA-binding response regulator that is phosphorylated by NtrB and interacts with sigma-54. NtrC usually controls the expression of glutamine synthase, GlnA, and may be called GlnL, GlnG, etc.
Probab=98.06 E-value=1.9e-05 Score=92.72 Aligned_cols=159 Identities=19% Similarity=0.248 Sum_probs=89.6
Q ss_pred CCcccCcHHHHHHHHHHHHhhcChhHHHhcCCCCCceeEecCCCCCChHHHHHHHHHHc---CCCEEEeechhhhhhh--
Q 035561 454 LKDFASVESMREEINEVVAFLQNPSAFQEMGARAPRGVLIVGERGTGKTSLALAIAAEA---RVPVVNVEAQELEAGL-- 528 (979)
Q Consensus 454 f~DIvGleevke~L~eiV~~L~~p~~f~~lG~~~P~gVLL~GPPGTGKTtLArAlA~el---g~~~i~Is~sdL~~~~-- 528 (979)
...++|.......+.+.+..+ ...+..+++.|.+||||+++|+++.... +.||+.++|..+..+.
T Consensus 133 ~~~lig~s~~~~~v~~~i~~~----------a~~~~~vli~Ge~GtGK~~~A~~ih~~~~~~~~~~~~~~c~~~~~~~~~ 202 (463)
T TIGR01818 133 SAELIGEAPAMQEVFRAIGRL----------SRSDITVLINGESGTGKELVARALHRHSPRANGPFIALNMAAIPKDLIE 202 (463)
T ss_pred ccceeecCHHHHHHHHHHHHH----------hCcCCeEEEECCCCCCHHHHHHHHHHhCCCCCCCeEEEeCCCCCHHHHH
Confidence 346888776666555444332 1234569999999999999999998875 5799999997763211
Q ss_pred --hcccchhh-------HHHHHHHHHhcCCeEEEEcCccccccccccccCCCchhhHHHHHHHHhhhccc-----cc---
Q 035561 529 --WVGQSASN-------VRELFQTARDLAPVIIFVEDFDLFAGVRGQFIHTKQQDHESFINQLLVELDGF-----EK--- 591 (979)
Q Consensus 529 --~vG~~~~~-------Ir~lF~~A~~~aP~ILfIDEIDaL~~~r~~~~~~~~~~~~~iln~LL~~LDg~-----~~--- 591 (979)
..|..... ....|.. ..++.|||||++.|.. .....|+..++.- ..
T Consensus 203 ~~lfg~~~~~~~~~~~~~~g~~~~---a~~gtl~l~ei~~l~~--------------~~q~~ll~~l~~~~~~~~~~~~~ 265 (463)
T TIGR01818 203 SELFGHEKGAFTGANTRRQGRFEQ---ADGGTLFLDEIGDMPL--------------DAQTRLLRVLADGEFYRVGGRTP 265 (463)
T ss_pred HHhcCCCCCCCCCcccCCCCcEEE---CCCCeEEEEchhhCCH--------------HHHHHHHHHHhcCcEEECCCCce
Confidence 11111000 0011222 2468999999998832 1223344444321 11
Q ss_pred -CCeEEEEecccc-hh------hchhhhhcCCcee-eEeccCCCC--HHHHHHHHHHHHHh
Q 035561 592 -QDGVVLMATTRN-IK------QIDEALQRPGRMD-RIFNLQKPT--QSEREKILRIAAQE 641 (979)
Q Consensus 592 -~~~ViVIATTN~-pe------~LDpALlRpgRFd-~~I~~~~Pd--~eeR~~IL~~~l~~ 641 (979)
...+.||+||+. ++ .+.+.|.. |+. ..|.+|+.. .++...+++.+++.
T Consensus 266 ~~~~~rii~~~~~~l~~~~~~~~f~~~L~~--rl~~~~i~lPpLr~R~~Di~~l~~~~l~~ 324 (463)
T TIGR01818 266 IKVDVRIVAATHQNLEALVRQGKFREDLFH--RLNVIRIHLPPLRERREDIPRLARHFLAL 324 (463)
T ss_pred eeeeeEEEEeCCCCHHHHHHcCCcHHHHHH--HhCcceecCCCcccchhhHHHHHHHHHHH
Confidence 124567777765 22 22334443 443 356666655 45566666666654
No 245
>PF00931 NB-ARC: NB-ARC domain; InterPro: IPR002182 This is the NB-ARC domain, a novel signalling motif found in bacteria and eukaryotes, shared by plant resistance gene products and regulators of cell death in animals []. This domain has been structurally characterised in the human protein apoptotic protease-activating factor 1 (Apaf-1) []. It contains the three-layered alpha-beta fold and subsequent short alpha-helical region characteristic of the AAA+ ATPase domain superfamily. While this domain is thought to bind and hyrolyse ATP, only ADP binding has been experimentally verified. It is proposed that binding and hydrolysis of ATP by this domain induces conformational changes the the overall protein, leading to formation of the apoptosome.; GO: 0043531 ADP binding; PDB: 3IZA_E 1Z6T_D 3SFZ_A 3SHF_A 1VT4_M 3IZ8_G 3LQR_A 2A5Y_C 3LQQ_A.
Probab=98.03 E-value=9.5e-05 Score=80.80 Aligned_cols=164 Identities=20% Similarity=0.214 Sum_probs=85.6
Q ss_pred CCCceeEecCCCCCChHHHHHHHHHH--cCCC---EEEeechhh------hh---hhh--------cccchhhHHHHHHH
Q 035561 486 RAPRGVLIVGERGTGKTSLALAIAAE--ARVP---VVNVEAQEL------EA---GLW--------VGQSASNVRELFQT 543 (979)
Q Consensus 486 ~~P~gVLL~GPPGTGKTtLArAlA~e--lg~~---~i~Is~sdL------~~---~~~--------vG~~~~~Ir~lF~~ 543 (979)
+..+-|.|+|++|+|||+||+.+++. .... ++.++.+.- .. ... ...........+..
T Consensus 17 ~~~~~v~I~G~~G~GKT~LA~~~~~~~~~~~~f~~v~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~ 96 (287)
T PF00931_consen 17 NEVRVVAIVGMGGIGKTTLARQVARDLRIKNRFDGVIWVSLSKNPSLEQLLEQILRQLGEPDSSISDPKDIEELQDQLRE 96 (287)
T ss_dssp TSSEEEEEEESTTSSHHHHHHHHHCHHHHCCCCTEEEEEEEES-SCCHHHHHHHHHHHTCC-STSSCCSSHHHHHHHHHH
T ss_pred CCeEEEEEEcCCcCCcceeeeecccccccccccccccccccccccccccccccccccccccccccccccccccccccchh
Confidence 34567899999999999999999987 3322 233333211 10 000 01112223333333
Q ss_pred HHhcCCeEEEEcCccccccccccccCCCchhhHHHHHHHHhhhcccccCCeEEEEecccchhhchhhhhcCCceeeEecc
Q 035561 544 ARDLAPVIIFVEDFDLFAGVRGQFIHTKQQDHESFINQLLVELDGFEKQDGVVLMATTRNIKQIDEALQRPGRMDRIFNL 623 (979)
Q Consensus 544 A~~~aP~ILfIDEIDaL~~~r~~~~~~~~~~~~~iln~LL~~LDg~~~~~~ViVIATTN~pe~LDpALlRpgRFd~~I~~ 623 (979)
.-...+++|+||+++... .+..+...+... ..+.-||.||..... -..... -+..+++
T Consensus 97 ~L~~~~~LlVlDdv~~~~----------------~~~~l~~~~~~~--~~~~kilvTTR~~~v-~~~~~~---~~~~~~l 154 (287)
T PF00931_consen 97 LLKDKRCLLVLDDVWDEE----------------DLEELREPLPSF--SSGSKILVTTRDRSV-AGSLGG---TDKVIEL 154 (287)
T ss_dssp HHCCTSEEEEEEEE-SHH----------------HH-------HCH--HSS-EEEEEESCGGG-GTTHHS---CEEEEEC
T ss_pred hhccccceeeeeeecccc----------------cccccccccccc--ccccccccccccccc-cccccc---ccccccc
Confidence 334459999999987431 222222222221 123456667776432 222222 1478999
Q ss_pred CCCCHHHHHHHHHHHHHhccc-hhhhhhhhHHHHHHHcCCCCHHHHHHHH
Q 035561 624 QKPTQSEREKILRIAAQETMD-EELIDLVDWRKVAEKTALLRPIELKLVP 672 (979)
Q Consensus 624 ~~Pd~eeR~~IL~~~l~~~~~-~~l~~dvdL~~LA~~T~GfsgaDL~~Lv 672 (979)
+..+.++-.++++........ ......-....+++.+.| .|-.|..+.
T Consensus 155 ~~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~~i~~~c~g-lPLal~~~a 203 (287)
T PF00931_consen 155 EPLSEEEALELFKKRAGRKESESPEDLEDLAKEIVEKCGG-LPLALKLIA 203 (287)
T ss_dssp SS--HHHHHHHHHHHHTSHS----TTSCTHHHHHHHHTTT--HHHHHHHH
T ss_pred cccccccccccccccccccccccccccccccccccccccc-ccccccccc
Confidence 999999999999998765420 011112235678888877 555555553
No 246
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=98.03 E-value=1.5e-05 Score=78.42 Aligned_cols=72 Identities=24% Similarity=0.302 Sum_probs=47.3
Q ss_pred eEecCCCCCChHHHHHHHHHHc---CCCEEEeechhhhhhh---------------------hccc--chhhHHHHHHHH
Q 035561 491 VLIVGERGTGKTSLALAIAAEA---RVPVVNVEAQELEAGL---------------------WVGQ--SASNVRELFQTA 544 (979)
Q Consensus 491 VLL~GPPGTGKTtLArAlA~el---g~~~i~Is~sdL~~~~---------------------~vG~--~~~~Ir~lF~~A 544 (979)
++|+||||||||+++..++..+ +.+++.+++....... .... .....+.....+
T Consensus 2 ~~i~G~~G~GKT~l~~~i~~~~~~~~~~v~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (165)
T cd01120 2 ILVFGPTGSGKTTLALQLALNIATKGGKVVYVDIEEEIEELTERLIGESLKGALDNLIIVFATADDPAAARLLSKAERLR 81 (165)
T ss_pred eeEeCCCCCCHHHHHHHHHHHHHhcCCEEEEEECCcchHHHHHHHhhhhhccccccEEEEEcCCCCCcHHHHHHHHHHHH
Confidence 6899999999999999999887 5677777664332100 0000 011111234445
Q ss_pred HhcCCeEEEEcCcccccc
Q 035561 545 RDLAPVIIFVEDFDLFAG 562 (979)
Q Consensus 545 ~~~aP~ILfIDEIDaL~~ 562 (979)
....|.+++|||+..+..
T Consensus 82 ~~~~~~~lviDe~~~~~~ 99 (165)
T cd01120 82 ERGGDDLIILDELTRLVR 99 (165)
T ss_pred hCCCCEEEEEEcHHHHHH
Confidence 566789999999998864
No 247
>TIGR02237 recomb_radB DNA repair and recombination protein RadB. This family consists exclusively of archaeal RadB protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239) and DMC1 (TIGR02238), and archaeal RadA (TIGR02236).
Probab=98.02 E-value=1.3e-05 Score=84.09 Aligned_cols=116 Identities=15% Similarity=0.236 Sum_probs=66.6
Q ss_pred CCCCCceeEecCCCCCChHHHHHHHHHHc---CCCEEEeechhhhhhhhccc----------------------chhhHH
Q 035561 484 GARAPRGVLIVGERGTGKTSLALAIAAEA---RVPVVNVEAQELEAGLWVGQ----------------------SASNVR 538 (979)
Q Consensus 484 G~~~P~gVLL~GPPGTGKTtLArAlA~el---g~~~i~Is~sdL~~~~~vG~----------------------~~~~Ir 538 (979)
|++...-++++||||||||+++..++.+. +.+++++++.++....+... ....+.
T Consensus 8 Gi~~g~i~~i~G~~GsGKT~l~~~~~~~~~~~g~~v~yi~~e~~~~~rl~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~ 87 (209)
T TIGR02237 8 GVERGTITQIYGPPGSGKTNICMILAVNAARQGKKVVYIDTEGLSPERFKQIAEDRPERALSNFIVFEVFDFDEQGVAIQ 87 (209)
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEECCCCCHHHHHHHHHhChHHHhcCEEEEECCCHHHHHHHHH
Confidence 56666778999999999999999988654 66788888865211111110 011133
Q ss_pred HHHHHHHhcCCeEEEEcCccccccccccccCCCchhhHHHHHHHHhhhcccccCCeEEEEeccc
Q 035561 539 ELFQTARDLAPVIIFVEDFDLFAGVRGQFIHTKQQDHESFINQLLVELDGFEKQDGVVLMATTR 602 (979)
Q Consensus 539 ~lF~~A~~~aP~ILfIDEIDaL~~~r~~~~~~~~~~~~~iln~LL~~LDg~~~~~~ViVIATTN 602 (979)
.+.+.+....|++|+||-+.++...... +.. ....+.+..++..|..+....++.++.|+.
T Consensus 88 ~l~~~~~~~~~~lvVIDSis~l~~~~~~--~~~-~~~~~~l~~~~~~L~~~~~~~~v~vl~t~~ 148 (209)
T TIGR02237 88 KTSKFIDRDSASLVVVDSFTALYRLELS--DDR-ISRNRELARQLTLLLSLARKKNLAVVITNQ 148 (209)
T ss_pred HHHHHHhhcCccEEEEeCcHHHhHHHhC--Ccc-HHHHHHHHHHHHHHHHHHHHcCCEEEEEcc
Confidence 3444455557999999999988642111 111 112223333333344443445566666543
No 248
>PRK05917 DNA polymerase III subunit delta'; Validated
Probab=97.99 E-value=3.7e-05 Score=85.53 Aligned_cols=123 Identities=13% Similarity=0.159 Sum_probs=83.3
Q ss_pred CCCCceeEecCCCCCChHHHHHHHHHHcCCCEEEeechhhhhhh-------h-cc----cchhhHHHHHHHHHhc----C
Q 035561 485 ARAPRGVLIVGERGTGKTSLALAIAAEARVPVVNVEAQELEAGL-------W-VG----QSASNVRELFQTARDL----A 548 (979)
Q Consensus 485 ~~~P~gVLL~GPPGTGKTtLArAlA~elg~~~i~Is~sdL~~~~-------~-vG----~~~~~Ir~lF~~A~~~----a 548 (979)
.+.|...||+||+|+||+++|.++|..+-+.--.-+|..+..+. + .| -+...+|++-+.+... .
T Consensus 16 ~rl~HAyLf~G~~G~Gk~~lA~~~A~~llC~~~~~~c~~~~~~~HPD~~~i~p~~~~~~I~idqiR~l~~~~~~~p~e~~ 95 (290)
T PRK05917 16 QKVPSAIILHGQDLSNLSARAYELASLILKETSPEAAYKISQKIHPDIHEFSPQGKGRLHSIETPRAIKKQIWIHPYESP 95 (290)
T ss_pred CCcCeeEeeECCCCCcHHHHHHHHHHHHhCCCCccHHHHHhcCCCCCEEEEecCCCCCcCcHHHHHHHHHHHhhCccCCC
Confidence 35677899999999999999999999874421001121110000 0 11 2345667766665432 2
Q ss_pred CeEEEEcCccccccccccccCCCchhhHHHHHHHHhhhcccccCCeEEEEecccchhhchhhhhcCCceeeEeccCCC
Q 035561 549 PVIIFVEDFDLFAGVRGQFIHTKQQDHESFINQLLVELDGFEKQDGVVLMATTRNIKQIDEALQRPGRMDRIFNLQKP 626 (979)
Q Consensus 549 P~ILfIDEIDaL~~~r~~~~~~~~~~~~~iln~LL~~LDg~~~~~~ViVIATTN~pe~LDpALlRpgRFd~~I~~~~P 626 (979)
..|++||++|.+ .....|.||+.|+. +.+++++|..|++++.|.|.+++ |. ..+.|+++
T Consensus 96 ~kv~ii~~ad~m--------------t~~AaNaLLK~LEE--Pp~~~~fiL~~~~~~~ll~TI~S--Rc-q~~~~~~~ 154 (290)
T PRK05917 96 YKIYIIHEADRM--------------TLDAISAFLKVLED--PPQHGVIILTSAKPQRLPPTIRS--RS-LSIHIPME 154 (290)
T ss_pred ceEEEEechhhc--------------CHHHHHHHHHHhhc--CCCCeEEEEEeCChhhCcHHHHh--cc-eEEEccch
Confidence 369999999988 35567889999885 45667788888889999999999 44 56677665
No 249
>KOG1970 consensus Checkpoint RAD17-RFC complex, RAD17/RAD24 component [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=97.99 E-value=9.6e-05 Score=86.83 Aligned_cols=214 Identities=14% Similarity=0.181 Sum_probs=108.4
Q ss_pred cccCCCCCCCCcccCcHHHHHHHHHHHHhhcChhHH-HhcCCCCCceeEecCCCCCChHHHHHHHHHHcCCCEEEeech-
Q 035561 445 KRVKNPPIPLKDFASVESMREEINEVVAFLQNPSAF-QEMGARAPRGVLIVGERGTGKTSLALAIAAEARVPVVNVEAQ- 522 (979)
Q Consensus 445 ~~v~~~~~~f~DIvGleevke~L~eiV~~L~~p~~f-~~lG~~~P~gVLL~GPPGTGKTtLArAlA~elg~~~i~Is~s- 522 (979)
+-.+..|.+.++++-...-.++++ .+|+.-..+ ..+| .+-+||+||+||||||.++.+|+++|..+++-+..
T Consensus 72 W~eKy~P~t~eeLAVHkkKI~eVk---~WL~~~~~~~~~l~---~~iLLltGPsGcGKSTtvkvLskelg~~~~Ew~Npi 145 (634)
T KOG1970|consen 72 WVEKYKPRTLEELAVHKKKISEVK---QWLKQVAEFTPKLG---SRILLLTGPSGCGKSTTVKVLSKELGYQLIEWSNPI 145 (634)
T ss_pred hHHhcCcccHHHHhhhHHhHHHHH---HHHHHHHHhccCCC---ceEEEEeCCCCCCchhHHHHHHHhhCceeeeecCCc
Confidence 344667778888876654444444 333311111 1112 23588999999999999999999999877764411
Q ss_pred hhhh-hh------hcc----cchhhHHHHHHHHHh------------cCCeEEEEcCccccccccccccCCCchhhHHHH
Q 035561 523 ELEA-GL------WVG----QSASNVRELFQTARD------------LAPVIIFVEDFDLFAGVRGQFIHTKQQDHESFI 579 (979)
Q Consensus 523 dL~~-~~------~vG----~~~~~Ir~lF~~A~~------------~aP~ILfIDEIDaL~~~r~~~~~~~~~~~~~il 579 (979)
.+.. +. +.+ ..-.........+.+ ..|.+|+|||+=..+.. + ....+
T Consensus 146 ~~~~~~~~h~~t~~~~~~~~s~L~~fesFler~~kyg~l~~~g~~~~~~~~liLveDLPn~~~~--------d--~~~~f 215 (634)
T KOG1970|consen 146 NLKEPENLHNETSFLMFPYQSQLAVFESFLLRATKYGSLQMSGDDLRTDKKLILVEDLPNQFYR--------D--DSETF 215 (634)
T ss_pred cccccccccccchhcccchhhHHHHHHHHHHHHHhhchhhhcccccccCceEEEeeccchhhhh--------h--hHHHH
Confidence 1100 00 000 011111112222311 23679999998655321 1 12223
Q ss_pred HHHHhhhcccccCCeEEEEecccchhhchhhhhcC------CceeeEeccCCCCHHHHHHHHHHHHHhccchh----hhh
Q 035561 580 NQLLVELDGFEKQDGVVLMATTRNIKQIDEALQRP------GRMDRIFNLQKPTQSEREKILRIAAQETMDEE----LID 649 (979)
Q Consensus 580 n~LL~~LDg~~~~~~ViVIATTN~pe~LDpALlRp------gRFd~~I~~~~Pd~eeR~~IL~~~l~~~~~~~----l~~ 649 (979)
...|.++-.....+-|++|.-++.++..++..+.| +|.+ .|.|.+-...--...|+..+...+... ...
T Consensus 216 ~evL~~y~s~g~~PlIf~iTd~~~~g~nnq~rlf~~d~q~~~ri~-~IsFNPIa~T~MKK~L~ric~~e~~~~s~~k~~~ 294 (634)
T KOG1970|consen 216 REVLRLYVSIGRCPLIFIITDSLSNGNNNQDRLFPKDIQEEPRIS-NISFNPIAPTIMKKFLKRICRIEANKKSGIKVPD 294 (634)
T ss_pred HHHHHHHHhcCCCcEEEEEeccccCCCcchhhhchhhhhhccCcc-eEeecCCcHHHHHHHHHHHHHHhcccccCCcCch
Confidence 33333332222334344444444444443333221 2442 567777776666666666555432211 122
Q ss_pred hhhHHHHHHHcCCCCHHHHHHHHHHHhhhh
Q 035561 650 LVDWRKVAEKTALLRPIELKLVPVALEGSA 679 (979)
Q Consensus 650 dvdL~~LA~~T~GfsgaDL~~Lv~aa~~aa 679 (979)
...+..++..+ ++||......++..+
T Consensus 295 ~~~v~~i~~~s----~GDIRsAInsLQlss 320 (634)
T KOG1970|consen 295 TAEVELICQGS----GGDIRSAINSLQLSS 320 (634)
T ss_pred hHHHHHHHHhc----CccHHHHHhHhhhhc
Confidence 33344455444 459998888887764
No 250
>PRK15115 response regulator GlrR; Provisional
Probab=97.96 E-value=3.7e-05 Score=89.81 Aligned_cols=133 Identities=26% Similarity=0.409 Sum_probs=76.0
Q ss_pred ceeEecCCCCCChHHHHHHHHHHc---CCCEEEeechhhhhhhh----cccch-------hhHHHHHHHHHhcCCeEEEE
Q 035561 489 RGVLIVGERGTGKTSLALAIAAEA---RVPVVNVEAQELEAGLW----VGQSA-------SNVRELFQTARDLAPVIIFV 554 (979)
Q Consensus 489 ~gVLL~GPPGTGKTtLArAlA~el---g~~~i~Is~sdL~~~~~----vG~~~-------~~Ir~lF~~A~~~aP~ILfI 554 (979)
..++++|++|||||++|+++.... +.||+.++|..+..... .|... .....+|+.| ..+.|||
T Consensus 158 ~~vli~Ge~GtGk~~lA~~ih~~s~r~~~~f~~i~c~~~~~~~~~~~lfg~~~~~~~~~~~~~~g~~~~a---~~gtl~l 234 (444)
T PRK15115 158 VSVLINGQSGTGKEILAQAIHNASPRASKPFIAINCGALPEQLLESELFGHARGAFTGAVSNREGLFQAA---EGGTLFL 234 (444)
T ss_pred CeEEEEcCCcchHHHHHHHHHHhcCCCCCCeEEEeCCCCCHHHHHHHhcCCCcCCCCCCccCCCCcEEEC---CCCEEEE
Confidence 459999999999999999998875 47999999987632110 01000 0001122222 3589999
Q ss_pred cCccccccccccccCCCchhhHHHHHHHHhhhcc-----ccc----CCeEEEEecccchhhchhhhhcCCcee-------
Q 035561 555 EDFDLFAGVRGQFIHTKQQDHESFINQLLVELDG-----FEK----QDGVVLMATTRNIKQIDEALQRPGRMD------- 618 (979)
Q Consensus 555 DEIDaL~~~r~~~~~~~~~~~~~iln~LL~~LDg-----~~~----~~~ViVIATTN~pe~LDpALlRpgRFd------- 618 (979)
||+|.|.. .....|+..++. ... ...+.+|+||+.. ++..+.+ |+|.
T Consensus 235 ~~i~~l~~--------------~~q~~L~~~l~~~~~~~~g~~~~~~~~~rii~~~~~~--l~~~~~~-~~f~~~l~~~l 297 (444)
T PRK15115 235 DEIGDMPA--------------PLQVKLLRVLQERKVRPLGSNRDIDIDVRIISATHRD--LPKAMAR-GEFREDLYYRL 297 (444)
T ss_pred EccccCCH--------------HHHHHHHHHHhhCCEEeCCCCceeeeeEEEEEeCCCC--HHHHHHc-CCccHHHHHhh
Confidence 99998842 122334444432 111 1256788888752 3333322 3442
Q ss_pred eEeccCCCCHHHHHH----HHHHHHHh
Q 035561 619 RIFNLQKPTQSEREK----ILRIAAQE 641 (979)
Q Consensus 619 ~~I~~~~Pd~eeR~~----IL~~~l~~ 641 (979)
..+.+..|...+|.+ +++.+++.
T Consensus 298 ~~~~i~lPpLr~R~eDi~~l~~~~l~~ 324 (444)
T PRK15115 298 NVVSLKIPALAERTEDIPLLANHLLRQ 324 (444)
T ss_pred ceeeecCCChHhccccHHHHHHHHHHH
Confidence 134566666777643 44555543
No 251
>PF03969 AFG1_ATPase: AFG1-like ATPase; InterPro: IPR005654 ATPase family gene 1 (AFG1) ATPase is a 377 amino acid putative protein with an ATPase motif typical of the protein family including SEC18p PAS1, CDC48-VCP and TBP. AFG1 also has substantial homology to these proteins outside the ATPase domain []. This family of proteins contains a P-loop motif.; GO: 0005524 ATP binding
Probab=97.95 E-value=2.1e-05 Score=90.13 Aligned_cols=106 Identities=19% Similarity=0.312 Sum_probs=61.8
Q ss_pred CCCCceeEecCCCCCChHHHHHHHHHHcCC-CEEEeechhhhhhh------hcccchhhHHHHHHHHHhcCCeEEEEcCc
Q 035561 485 ARAPRGVLIVGERGTGKTSLALAIAAEARV-PVVNVEAQELEAGL------WVGQSASNVRELFQTARDLAPVIIFVEDF 557 (979)
Q Consensus 485 ~~~P~gVLL~GPPGTGKTtLArAlA~elg~-~~i~Is~sdL~~~~------~vG~~~~~Ir~lF~~A~~~aP~ILfIDEI 557 (979)
...|+|+.||||+|+|||+|.-+....+.. .-..+...+++... +.| ....+..+-+...+ .-.||+|||+
T Consensus 59 ~~~~~GlYl~G~vG~GKT~Lmd~f~~~lp~~~k~R~HFh~Fm~~vh~~l~~~~~-~~~~l~~va~~l~~-~~~lLcfDEF 136 (362)
T PF03969_consen 59 PPPPKGLYLWGPVGRGKTMLMDLFYDSLPIKRKRRVHFHEFMLDVHSRLHQLRG-QDDPLPQVADELAK-ESRLLCFDEF 136 (362)
T ss_pred CCCCceEEEECCCCCchhHHHHHHHHhCCccccccccccHHHHHHHHHHHHHhC-CCccHHHHHHHHHh-cCCEEEEeee
Confidence 457899999999999999999999998854 11222222222110 011 11122222222222 3359999999
Q ss_pred cccccccccccCCCchhhHHHHHHHHhhhcccccCCeEEEEecccc-hhhc
Q 035561 558 DLFAGVRGQFIHTKQQDHESFINQLLVELDGFEKQDGVVLMATTRN-IKQI 607 (979)
Q Consensus 558 DaL~~~r~~~~~~~~~~~~~iln~LL~~LDg~~~~~~ViVIATTN~-pe~L 607 (979)
..- +-....++..|+..+= ..++++|+|+|+ |+.|
T Consensus 137 ~V~-----------DiaDAmil~rLf~~l~----~~gvvlVaTSN~~P~~L 172 (362)
T PF03969_consen 137 QVT-----------DIADAMILKRLFEALF----KRGVVLVATSNRPPEDL 172 (362)
T ss_pred ecc-----------chhHHHHHHHHHHHHH----HCCCEEEecCCCChHHH
Confidence 632 1112345555655442 357899999998 5554
No 252
>PF00493 MCM: MCM2/3/5 family This family extends the MCM domain of Prosite.; InterPro: IPR001208 MCM proteins are DNA-dependent ATPases required for the initiation of eukaryotic DNA replication [, , ]. In eukaryotes there is a family of six proteins, MCM2 to MCM7. They were first identified in yeast where most of them have a direct role in the initiation of chromosomal DNA replication by interacting directly with autonomously replicating sequences (ARS). They were thus called minichromosome maintenance proteins, MCM proteins []. This family is also present in the archebacteria in 1 to 4 copies. Methanocaldococcus jannaschii (Methanococcus jannaschii) has four members, MJ0363, MJ0961, MJ1489 and MJECL13. The "MCM motif" contains Walker-A and Walker-B type nucleotide binding motifs. The diagnostic sequence defining the MCMs is IDEFDKM. Only Mcm2 (aka Cdc19 or Nda1) has been subjected to mutational analysis in this region, and most mutations abolish its activity []. The presence of a putative ATP-binding domain implies that these proteins may be involved in an ATP-consuming step in the initiation of DNA replication in eukaryotes. The MCM proteins bind together in a large complex []. Within this complex, individual subunits associate with different affinities, and there is a tightly associated core of Mcm4 (Cdc21), Mcm6 (Mis5) and Mcm7 []. This core complex in human MCMs has been associated with helicase activity in vitro [], leading to the suggestion that the MCM proteins are the eukaryotic replicative helicase. Schizosaccharomyces pombe (Fission yeast) MCMs, like those in metazoans, are found in the nucleus throughout the cell cycle. This is in contrast to the Saccharomyces cerevisiae (Baker's yeast) in which MCM proteins move in and out of the nucleus during each cell cycle. The assembly of the MCM complex in S. pombe is required for MCM localisation, ensuring that only intact MCM complexes remain in the nucleus [].; GO: 0003677 DNA binding, 0005524 ATP binding, 0006260 DNA replication; PDB: 3F8T_A 3F9V_A.
Probab=97.86 E-value=2.6e-06 Score=96.47 Aligned_cols=161 Identities=22% Similarity=0.244 Sum_probs=82.1
Q ss_pred CcccCcHHHHHHHHHHHHhhcChhHH---HhcCCCCCceeEecCCCCCChHHHHHHHHHHcCCCEEEeechhhhhhhhcc
Q 035561 455 KDFASVESMREEINEVVAFLQNPSAF---QEMGARAPRGVLIVGERGTGKTSLALAIAAEARVPVVNVEAQELEAGLWVG 531 (979)
Q Consensus 455 ~DIvGleevke~L~eiV~~L~~p~~f---~~lG~~~P~gVLL~GPPGTGKTtLArAlA~elg~~~i~Is~sdL~~~~~vG 531 (979)
.+|.|.+.+|..+-- .|-..... .....+...++||.|.||||||.|.+.+++-+...+ ++++.... ..|
T Consensus 24 P~i~g~~~iK~aill---~L~~~~~~~~~~~~~~r~~ihiLlvGdpg~gKS~ll~~~~~~~pr~v-~~~g~~~s---~~g 96 (331)
T PF00493_consen 24 PSIYGHEDIKKAILL---QLFGGVEKNDPDGTRIRGNIHILLVGDPGTGKSQLLKYVAKLAPRSV-YTSGKGSS---AAG 96 (331)
T ss_dssp STTTT-HHHHHHHCC---CCTT--SCCCCT-TEE--S--EEEECSCHHCHHHHHHCCCCT-SSEE-EEECCGST---CCC
T ss_pred CcCcCcHHHHHHHHH---HHHhccccccccccccccccceeeccchhhhHHHHHHHHHhhCCceE-EECCCCcc---cCC
Confidence 467898888877641 11110000 000123446899999999999999998876554433 34433211 011
Q ss_pred cchhh----------HH-HHHHHHHhcCCeEEEEcCccccccccccccCCCchhhHHHHHHHHhhhcc----ccc-----
Q 035561 532 QSASN----------VR-ELFQTARDLAPVIIFVEDFDLFAGVRGQFIHTKQQDHESFINQLLVELDG----FEK----- 591 (979)
Q Consensus 532 ~~~~~----------Ir-~lF~~A~~~aP~ILfIDEIDaL~~~r~~~~~~~~~~~~~iln~LL~~LDg----~~~----- 591 (979)
-++.. +. ..+-.| ..+|.+|||+|.+-. .....|+..|+. +..
T Consensus 97 Lta~~~~d~~~~~~~leaGalvla---d~GiccIDe~dk~~~--------------~~~~~l~eaMEqq~isi~kagi~~ 159 (331)
T PF00493_consen 97 LTASVSRDPVTGEWVLEAGALVLA---DGGICCIDEFDKMKE--------------DDRDALHEAMEQQTISIAKAGIVT 159 (331)
T ss_dssp CCEEECCCGGTSSECEEE-HHHHC---TTSEEEECTTTT--C--------------HHHHHHHHHHHCSCEEECTSSSEE
T ss_pred ccceeccccccceeEEeCCchhcc---cCceeeecccccccc--------------hHHHHHHHHHHcCeeccchhhhcc
Confidence 11111 11 123333 359999999998721 123455555553 111
Q ss_pred --CCeEEEEecccchh-------------hchhhhhcCCceeeEecc-CCCCHHHHHHHHHHHHHh
Q 035561 592 --QDGVVLMATTRNIK-------------QIDEALQRPGRMDRIFNL-QKPTQSEREKILRIAAQE 641 (979)
Q Consensus 592 --~~~ViVIATTN~pe-------------~LDpALlRpgRFd~~I~~-~~Pd~eeR~~IL~~~l~~ 641 (979)
+...-|+||+|... .+++.|++ |||..+.+ +.|+.+.-..|.++.+..
T Consensus 160 ~l~ar~svlaa~NP~~g~~~~~~~~~~ni~l~~~LLS--RFDLif~l~D~~d~~~D~~la~~il~~ 223 (331)
T PF00493_consen 160 TLNARCSVLAAANPKFGRYDPNKSLSENINLPPPLLS--RFDLIFLLRDKPDEEEDERLAEHILDS 223 (331)
T ss_dssp EEE---EEEEEE--TT--S-TTS-CGCCT-S-CCCHC--C-SEEECC--TTT-HHHHHHHHHHHTT
T ss_pred cccchhhhHHHHhhhhhhcchhhhhHHhcccchhhHh--hcCEEEEeccccccccccccceEEEec
Confidence 23577899999854 47889999 99988765 667766666666665554
No 253
>PRK10365 transcriptional regulatory protein ZraR; Provisional
Probab=97.86 E-value=6.8e-05 Score=87.27 Aligned_cols=71 Identities=27% Similarity=0.404 Sum_probs=47.6
Q ss_pred CceeEecCCCCCChHHHHHHHHHHc---CCCEEEeechhhhhhh----hcccchhh-------HHHHHHHHHhcCCeEEE
Q 035561 488 PRGVLIVGERGTGKTSLALAIAAEA---RVPVVNVEAQELEAGL----WVGQSASN-------VRELFQTARDLAPVIIF 553 (979)
Q Consensus 488 P~gVLL~GPPGTGKTtLArAlA~el---g~~~i~Is~sdL~~~~----~vG~~~~~-------Ir~lF~~A~~~aP~ILf 553 (979)
...++++|.+||||+++|+++.... +.||+.++|..+.... ..|..... ....|.. ..+++||
T Consensus 162 ~~~vli~ge~g~gk~~~a~~ih~~s~~~~~~~i~~~c~~~~~~~~~~~lfg~~~~~~~~~~~~~~g~~~~---a~~gtl~ 238 (441)
T PRK10365 162 EATVLIHGDSGTGKELVARAIHASSARSEKPLVTLNCAALNESLLESELFGHEKGAFTGADKRREGRFVE---ADGGTLF 238 (441)
T ss_pred CCeEEEEecCCCCHHHHHHHHHHcCCCCCCCeeeeeCCCCCHHHHHHHhcCCCCCCcCCCCcCCCCceeE---CCCCEEE
Confidence 4569999999999999999998765 4799999998763211 01110000 0011222 2468999
Q ss_pred EcCccccc
Q 035561 554 VEDFDLFA 561 (979)
Q Consensus 554 IDEIDaL~ 561 (979)
|||||.|.
T Consensus 239 ldei~~l~ 246 (441)
T PRK10365 239 LDEIGDIS 246 (441)
T ss_pred EeccccCC
Confidence 99999884
No 254
>PRK05818 DNA polymerase III subunit delta'; Validated
Probab=97.78 E-value=8.6e-05 Score=81.31 Aligned_cols=122 Identities=11% Similarity=0.106 Sum_probs=82.6
Q ss_pred CCCceeEecCCCCCChHHHHHHHHHHcCCCE-----E-Eeechhhhhhh-----hc-----ccchhhHHHHHHHHHh---
Q 035561 486 RAPRGVLIVGERGTGKTSLALAIAAEARVPV-----V-NVEAQELEAGL-----WV-----GQSASNVRELFQTARD--- 546 (979)
Q Consensus 486 ~~P~gVLL~GPPGTGKTtLArAlA~elg~~~-----i-~Is~sdL~~~~-----~v-----G~~~~~Ir~lF~~A~~--- 546 (979)
.+|...||+||+|+||..+|.++|+.+-+.- = .-+|..+..+. ++ .-+...+|++-+....
T Consensus 5 ~~~HA~Lf~G~~G~G~~~lA~~~A~~llC~~~~~~Cg~C~sC~~i~~~~HPDl~~i~p~~~~I~id~ir~l~~~l~~~s~ 84 (261)
T PRK05818 5 NKTHPLLLIERKGSFLKPFLYEYLTSIVCTKANGFCKTCESCLKILNGKYNDFYLIFDQKNPIKKEDALSIINKLNRPSV 84 (261)
T ss_pred CCCcceeeeCCCCCcHHHHHHHHHHHHcCCCCCCCCCCCHHHHHHhcCCCCCEEEecCCcccCCHHHHHHHHHHHccCch
Confidence 4577899999999999999999998763210 0 00111111010 10 1234456666555432
Q ss_pred --cCCeEEEEcCccccccccccccCCCchhhHHHHHHHHhhhcccccCCeEEEEecccchhhchhhhhcCCceeeEeccC
Q 035561 547 --LAPVIIFVEDFDLFAGVRGQFIHTKQQDHESFINQLLVELDGFEKQDGVVLMATTRNIKQIDEALQRPGRMDRIFNLQ 624 (979)
Q Consensus 547 --~aP~ILfIDEIDaL~~~r~~~~~~~~~~~~~iln~LL~~LDg~~~~~~ViVIATTN~pe~LDpALlRpgRFd~~I~~~ 624 (979)
....|++|+++|.+ .....|.||+.++. +..++++|.+|++++.+.|.+++ |. ..+.++
T Consensus 85 e~~~~KV~II~~ae~m--------------~~~AaNaLLK~LEE--Pp~~t~fiLit~~~~~lLpTI~S--RC-q~~~~~ 145 (261)
T PRK05818 85 ESNGKKIYIIYGIEKL--------------NKQSANSLLKLIEE--PPKNTYGIFTTRNENNILNTILS--RC-VQYVVL 145 (261)
T ss_pred hcCCCEEEEeccHhhh--------------CHHHHHHHHHhhcC--CCCCeEEEEEECChHhCchHhhh--he-eeeecC
Confidence 12479999999977 45678899999985 55678888889999999999999 54 456676
Q ss_pred CC
Q 035561 625 KP 626 (979)
Q Consensus 625 ~P 626 (979)
.+
T Consensus 146 ~~ 147 (261)
T PRK05818 146 SK 147 (261)
T ss_pred Ch
Confidence 66
No 255
>PRK07276 DNA polymerase III subunit delta'; Validated
Probab=97.75 E-value=0.0002 Score=79.85 Aligned_cols=129 Identities=19% Similarity=0.311 Sum_probs=85.9
Q ss_pred CCCceeEecCCCCCChHHHHHHHHHHcCCCE-------EE-eechhhhhhhh-----c---c--cchhhHHHHHHHHHhc
Q 035561 486 RAPRGVLIVGERGTGKTSLALAIAAEARVPV-------VN-VEAQELEAGLW-----V---G--QSASNVRELFQTARDL 547 (979)
Q Consensus 486 ~~P~gVLL~GPPGTGKTtLArAlA~elg~~~-------i~-Is~sdL~~~~~-----v---G--~~~~~Ir~lF~~A~~~ 547 (979)
+.|.++||+|| +||+++|+++|..+-+.- =. -+|..+..+.+ + | .....+|++...+...
T Consensus 22 rl~hAyLf~G~--~G~~~~A~~~A~~llC~~~~~~~~Cg~C~~C~~i~~~~HPD~~~i~p~~~~I~idqIR~l~~~~~~~ 99 (290)
T PRK07276 22 RLNHAYLFSGD--FASFEMALFLAQSLFCEQKEGVLPCGHCRSCRLIEQGEFSDVTVIEPQGQVIKTDTIRELVKNFSQS 99 (290)
T ss_pred CcceeeeeeCC--ccHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHhcCCCCCeeeecCCCCcCCHHHHHHHHHHHhhC
Confidence 56778999996 689999999998774311 00 11111111111 1 1 2345677776666432
Q ss_pred ----CCeEEEEcCccccccccccccCCCchhhHHHHHHHHhhhcccccCCeEEEEecccchhhchhhhhcCCceeeEecc
Q 035561 548 ----APVIIFVEDFDLFAGVRGQFIHTKQQDHESFINQLLVELDGFEKQDGVVLMATTRNIKQIDEALQRPGRMDRIFNL 623 (979)
Q Consensus 548 ----aP~ILfIDEIDaL~~~r~~~~~~~~~~~~~iln~LL~~LDg~~~~~~ViVIATTN~pe~LDpALlRpgRFd~~I~~ 623 (979)
...|++||++|.+ .....|.||+.|+. +..++++|.+|++++.|.|.+++ |. ..+.|
T Consensus 100 p~~~~~kV~II~~ad~m--------------~~~AaNaLLKtLEE--Pp~~t~~iL~t~~~~~lLpTI~S--Rc-q~i~f 160 (290)
T PRK07276 100 GYEGKQQVFIIKDADKM--------------HVNAANSLLKVIEE--PQSEIYIFLLTNDENKVLPTIKS--RT-QIFHF 160 (290)
T ss_pred cccCCcEEEEeehhhhc--------------CHHHHHHHHHHhcC--CCCCeEEEEEECChhhCchHHHH--cc-eeeeC
Confidence 2379999999987 35567899999985 44567888888889999999999 44 67788
Q ss_pred CCCCHHHHHHHHH
Q 035561 624 QKPTQSEREKILR 636 (979)
Q Consensus 624 ~~Pd~eeR~~IL~ 636 (979)
+. +.+...+++.
T Consensus 161 ~~-~~~~~~~~L~ 172 (290)
T PRK07276 161 PK-NEAYLIQLLE 172 (290)
T ss_pred CC-cHHHHHHHHH
Confidence 65 5555555554
No 256
>PRK07132 DNA polymerase III subunit delta'; Validated
Probab=97.72 E-value=0.0002 Score=80.23 Aligned_cols=127 Identities=15% Similarity=0.206 Sum_probs=88.0
Q ss_pred CCCceeEecCCCCCChHHHHHHHHHHcCC-----------C--EEEeechhhhhhhhcccchhhHHHHHHHHHh-----c
Q 035561 486 RAPRGVLIVGERGTGKTSLALAIAAEARV-----------P--VVNVEAQELEAGLWVGQSASNVRELFQTARD-----L 547 (979)
Q Consensus 486 ~~P~gVLL~GPPGTGKTtLArAlA~elg~-----------~--~i~Is~sdL~~~~~vG~~~~~Ir~lF~~A~~-----~ 547 (979)
+.+...||+|+.|+||+++|+.+++.+-+ | +..++.. + ...+...++++.+.... .
T Consensus 16 ~l~haYLf~G~eg~gk~~~a~~~a~~l~c~~~~~~~~~~~p~n~~~~d~~----g--~~i~vd~Ir~l~~~~~~~~~~~~ 89 (299)
T PRK07132 16 KISHSFLLKSNYNEDIDEKILYFLNKFNNLQITNLNEQELPANIILFDIF----D--KDLSKSEFLSAINKLYFSSFVQS 89 (299)
T ss_pred CCCeEEEEeCCCCCCHHHHHHHHHHHHcCcCCCCCCCCCCCcceEEeccC----C--CcCCHHHHHHHHHHhccCCcccC
Confidence 34556899999999999999999998722 1 1222200 0 01123456666665532 2
Q ss_pred CCeEEEEcCccccccccccccCCCchhhHHHHHHHHhhhcccccCCeEEEEecccchhhchhhhhcCCceeeEeccCCCC
Q 035561 548 APVIIFVEDFDLFAGVRGQFIHTKQQDHESFINQLLVELDGFEKQDGVVLMATTRNIKQIDEALQRPGRMDRIFNLQKPT 627 (979)
Q Consensus 548 aP~ILfIDEIDaL~~~r~~~~~~~~~~~~~iln~LL~~LDg~~~~~~ViVIATTN~pe~LDpALlRpgRFd~~I~~~~Pd 627 (979)
...|++||++|.+ .....|.||+.|+. +.+.+++|.+|+.++.|-|.++++| ..++|++|+
T Consensus 90 ~~KvvII~~~e~m--------------~~~a~NaLLK~LEE--Pp~~t~~il~~~~~~kll~TI~SRc---~~~~f~~l~ 150 (299)
T PRK07132 90 QKKILIIKNIEKT--------------SNSLLNALLKTIEE--PPKDTYFLLTTKNINKVLPTIVSRC---QVFNVKEPD 150 (299)
T ss_pred CceEEEEeccccc--------------CHHHHHHHHHHhhC--CCCCeEEEEEeCChHhChHHHHhCe---EEEECCCCC
Confidence 4579999999876 34466788888886 3345566666668899999999854 789999999
Q ss_pred HHHHHHHHHH
Q 035561 628 QSEREKILRI 637 (979)
Q Consensus 628 ~eeR~~IL~~ 637 (979)
.++..+.|..
T Consensus 151 ~~~l~~~l~~ 160 (299)
T PRK07132 151 QQKILAKLLS 160 (299)
T ss_pred HHHHHHHHHH
Confidence 9888877764
No 257
>PHA00729 NTP-binding motif containing protein
Probab=97.72 E-value=0.00013 Score=78.47 Aligned_cols=25 Identities=36% Similarity=0.615 Sum_probs=23.2
Q ss_pred ceeEecCCCCCChHHHHHHHHHHcC
Q 035561 489 RGVLIVGERGTGKTSLALAIAAEAR 513 (979)
Q Consensus 489 ~gVLL~GPPGTGKTtLArAlA~elg 513 (979)
.+++|+|+||||||++|.++|..++
T Consensus 18 ~nIlItG~pGvGKT~LA~aLa~~l~ 42 (226)
T PHA00729 18 VSAVIFGKQGSGKTTYALKVARDVF 42 (226)
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHH
Confidence 3799999999999999999999875
No 258
>PF00910 RNA_helicase: RNA helicase; InterPro: IPR000605 Helicases have been classified in 5 superfamilies (SF1-SF5). All of the proteins bind ATP and, consequently, all of them carry the classical Walker A (phosphate-binding loop or P-loop) and Walker B (Mg2+-binding aspartic acid) motifs. Superfamily 3 consists of helicases encoded mainly by small DNA viruses and some large nucleocytoplasmic DNA viruses [, ]. Small viruses are very dependent on the host-cell machinery to replicate. SF3 helicase in small viruses is associated with an origin-binding domain. By pairing a domain that recognises the ori with a helicase, the virus can bypass the host-cell-based regulation pathway and initiate its own replication. The protein binds to the viral ori leading to origin unwinding. Cellular replication proteins are then recruited to the ori and the viral DNA is replicated. In SF3 helicases the Walker A and Walker B motifs are separated by spacers of rather uniform, and relatively short, length. In addition to the A and B motifs this family is characterised by a third motif (C) which resides between the B motif and the C terminus of the conserved region. This motif consists of an Asn residue preceded by a run of hydrophobic residues []. Several structures of SF3 helicases have been solved []. They all possess the same core alpha/beta fold, consisting of a five-stranded parallel beta sheet flanked on both sides by several alpha helices. In contrast to SF1 and SF2 helicases, which have RecA-like core folds, the strand connectivity within the alpha/beta core domain is that of AAA+ proteins []. The SF3 helicase proteins assemble into a hexameric ring. Some proteins known to contain an SF3 helicase domain are listed below: Polyomavirus large T antigen. It initiates DNA unwinding and replication via interactions with the viral origin of replication. Papillomavirus E1 protein. An ATP-dependent DNA helicase required for initiation of viral DNA replication. Parvovirus Rep/NS1 protein, which is also required for the initiation of viral replication. Poxviridae and other large DNA viruses D5 protein. Bacteriophage DNA primase/helicase protein. Bacterial prophage DNA primase/helicase protein. The entry represents the core alpha/beta fold of the SF3 helicase domain found predominantly in DNA viruses.; GO: 0003723 RNA binding, 0003724 RNA helicase activity
Probab=97.67 E-value=0.00011 Score=69.85 Aligned_cols=23 Identities=35% Similarity=0.547 Sum_probs=20.9
Q ss_pred eEecCCCCCChHHHHHHHHHHcC
Q 035561 491 VLIVGERGTGKTSLALAIAAEAR 513 (979)
Q Consensus 491 VLL~GPPGTGKTtLArAlA~elg 513 (979)
|.|+||||+|||++|+.+|..+.
T Consensus 1 I~i~G~~G~GKS~l~~~l~~~l~ 23 (107)
T PF00910_consen 1 IWIYGPPGIGKSTLAKELAKDLL 23 (107)
T ss_pred CEEECCCCCCHHHHHHHHHHHHH
Confidence 57999999999999999998775
No 259
>PF05707 Zot: Zonular occludens toxin (Zot); InterPro: IPR008900 This entry consists of bacterial and viral proteins which are very similar to the Zonular occludens toxin (Zot). Zot is elaborated by bacteriophage present in toxigenic strains of Vibrio cholerae. Zot is a single polypeptide chain of 44.8 kDa, with the ability to reversibly alter intestinal epithelial tight junctions, allowing the passage of macromolecules through mucosal barriers.; PDB: 2R2A_B.
Probab=97.64 E-value=0.00014 Score=76.14 Aligned_cols=124 Identities=18% Similarity=0.207 Sum_probs=60.2
Q ss_pred eEecCCCCCChHHHHHHH-HHHc---CCCEEEeechhhhhhhhcc---cchh-------------hHHHHHHHHHhcCCe
Q 035561 491 VLIVGERGTGKTSLALAI-AAEA---RVPVVNVEAQELEAGLWVG---QSAS-------------NVRELFQTARDLAPV 550 (979)
Q Consensus 491 VLL~GPPGTGKTtLArAl-A~el---g~~~i~Is~sdL~~~~~vG---~~~~-------------~Ir~lF~~A~~~aP~ 550 (979)
.+++|.||+|||+.|-.. ...+ |.+++. +...|..+.... .... .......-.....++
T Consensus 3 ~~~~G~pGsGKS~~av~~~i~~~l~~gr~V~t-ni~gL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (193)
T PF05707_consen 3 YLITGKPGSGKSYYAVSYVIIPALKKGRPVYT-NIPGLNIEKIQPVLGYDIPTRLIDLSDPDFEEDWDDPDDWRKLPKGS 81 (193)
T ss_dssp EEEE--TTSSHHHHHHHHHHH-GGGS---EEE---TTB-S--EEEE--TTT-S-----S--SSSEEGGGHHHHTTSGTT-
T ss_pred EEEEcCCCCcHhHHHHHHHHHHHHhCCCEEEE-ccCCcchhhhhhhccccccccccccccccchhhhhhhhhhcccCCCc
Confidence 578999999999987655 4432 667665 544221111111 0000 001111111112579
Q ss_pred EEEEcCccccccccccccCCCchhhHHHHHHHHhhhcccccCCeEEEEecccchhhchhhhhcCCceeeEeccCCC
Q 035561 551 IIFVEDFDLFAGVRGQFIHTKQQDHESFINQLLVELDGFEKQDGVVLMATTRNIKQIDEALQRPGRMDRIFNLQKP 626 (979)
Q Consensus 551 ILfIDEIDaL~~~r~~~~~~~~~~~~~iln~LL~~LDg~~~~~~ViVIATTN~pe~LDpALlRpgRFd~~I~~~~P 626 (979)
+|+|||+..+.+.|... .......+ +.+.. ....+.-|+.+|.++..||+.+++ +.+..+.+..+
T Consensus 82 liviDEa~~~~~~r~~~----~~~~~~~~-~~l~~----hRh~g~diiliTQ~~~~id~~ir~--lve~~~~~~k~ 146 (193)
T PF05707_consen 82 LIVIDEAQNFFPSRSWK----GKKVPEII-EFLAQ----HRHYGWDIILITQSPSQIDKFIRD--LVEYHYHCRKL 146 (193)
T ss_dssp EEEETTGGGTSB---T-----T----HHH-HGGGG----CCCTT-EEEEEES-GGGB-HHHHC--CEEEEEEEEE-
T ss_pred EEEEECChhhcCCCccc----cccchHHH-HHHHH----hCcCCcEEEEEeCCHHHHhHHHHH--HHheEEEEEee
Confidence 99999999998876431 11223334 33333 234567888899999999999987 88877776544
No 260
>PRK09361 radB DNA repair and recombination protein RadB; Provisional
Probab=97.62 E-value=0.00014 Score=77.42 Aligned_cols=39 Identities=31% Similarity=0.462 Sum_probs=33.0
Q ss_pred CCCCCceeEecCCCCCChHHHHHHHHHHc---CCCEEEeech
Q 035561 484 GARAPRGVLIVGERGTGKTSLALAIAAEA---RVPVVNVEAQ 522 (979)
Q Consensus 484 G~~~P~gVLL~GPPGTGKTtLArAlA~el---g~~~i~Is~s 522 (979)
|++...-++++||||+|||++|..+|.+. +.+++++++.
T Consensus 19 Gi~~g~i~~i~G~~GsGKT~l~~~la~~~~~~~~~v~yi~~e 60 (225)
T PRK09361 19 GFERGTITQIYGPPGSGKTNICLQLAVEAAKNGKKVIYIDTE 60 (225)
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEECC
Confidence 56666778999999999999999998754 7788888876
No 261
>CHL00195 ycf46 Ycf46; Provisional
Probab=97.56 E-value=0.0022 Score=76.47 Aligned_cols=181 Identities=18% Similarity=0.178 Sum_probs=113.1
Q ss_pred CeEEEEcCccccccccccccCCCchhhHHHHHHHHhhhcccccCCeEEEEecccchhhchhhhhcCCceeeEeccCCCCH
Q 035561 549 PVIIFVEDFDLFAGVRGQFIHTKQQDHESFINQLLVELDGFEKQDGVVLMATTRNIKQIDEALQRPGRMDRIFNLQKPTQ 628 (979)
Q Consensus 549 P~ILfIDEIDaL~~~r~~~~~~~~~~~~~iln~LL~~LDg~~~~~~ViVIATTN~pe~LDpALlRpgRFd~~I~~~~Pd~ 628 (979)
|+|+++.|++.++.. ....+.+..+..... .....+|+.+.+ -.+|+.|.+ +-..+.+|.|+.
T Consensus 82 ~~~~vl~d~h~~~~~---------~~~~r~l~~l~~~~~---~~~~~~i~~~~~--~~~p~el~~---~~~~~~~~lP~~ 144 (489)
T CHL00195 82 PALFLLKDFNRFLND---------ISISRKLRNLSRILK---TQPKTIIIIASE--LNIPKELKD---LITVLEFPLPTE 144 (489)
T ss_pred CcEEEEecchhhhcc---------hHHHHHHHHHHHHHH---hCCCEEEEEcCC--CCCCHHHHh---ceeEEeecCcCH
Confidence 789999999988621 123344444443332 233344444432 457777765 336889999999
Q ss_pred HHHHHHHHHHHHhccchhhhhhhhHHHHHHHcCCCCHHHHHHHHHHHhhhhhccCCCChHHHhhhcchhhhccCCCcccc
Q 035561 629 SEREKILRIAAQETMDEELIDLVDWRKVAEKTALLRPIELKLVPVALEGSAFRSKFLDTDELMSYCGWFATFSGVVPKWF 708 (979)
Q Consensus 629 eeR~~IL~~~l~~~~~~~l~~dvdL~~LA~~T~GfsgaDL~~Lv~aa~~aa~r~~~~s~~ei~~~~d~~aAl~~~~P~~l 708 (979)
+++.++++....... ...++.+++.+++.+.|+|-.++..+.+.+.. ....++.+++......... .+
T Consensus 145 ~ei~~~l~~~~~~~~--~~~~~~~~~~l~~~~~gls~~~~~~~~~~~~~---~~~~~~~~~~~~i~~~k~q-------~~ 212 (489)
T CHL00195 145 SEIKKELTRLIKSLN--IKIDSELLENLTRACQGLSLERIRRVLSKIIA---TYKTIDENSIPLILEEKKQ-------II 212 (489)
T ss_pred HHHHHHHHHHHHhcC--CCCCHHHHHHHHHHhCCCCHHHHHHHHHHHHH---HcCCCChhhHHHHHHHHHH-------HH
Confidence 999999988775431 33566788999999999999999988754321 2233343332111100000 01
Q ss_pred ccchh--hhhhhhhhhhhcCccccHHHHHHHHHh----hhccc-cccccccccCCCC
Q 035561 709 RKTKI--VKKISRMLVDHLGLTLTKEDLQNVVDL----MEPYG-QISNGIELLTPPL 758 (979)
Q Consensus 709 R~~~l--lk~~~v~w~DiGGl~vtkedL~eAIe~----~~kyg-~i~aG~e~~sp~l 758 (979)
+...+ ...++..+.|+||+...|+.+.+..+. ...|| ....|+-+++||+
T Consensus 213 ~~~~~le~~~~~~~~~dvgGl~~lK~~l~~~~~~~~~~~~~~gl~~pkGILL~GPpG 269 (489)
T CHL00195 213 SQTEILEFYSVNEKISDIGGLDNLKDWLKKRSTSFSKQASNYGLPTPRGLLLVGIQG 269 (489)
T ss_pred hhhccccccCCCCCHHHhcCHHHHHHHHHHHHHHhhHHHHhcCCCCCceEEEECCCC
Confidence 11111 123567899999999999988875443 23456 4577999999998
No 262
>TIGR02012 tigrfam_recA protein RecA. This model describes orthologs of the recA protein. RecA promotes hybridization of homolgous regions of DNA. A segment of ssDNA can be hybridized to another ssDNA region, or to a dsDNA region. ATP is hydrolyzed in the process. Part of the SOS respones, it is regulated by LexA via autocatalytic cleavage.
Probab=97.56 E-value=0.00029 Score=79.67 Aligned_cols=118 Identities=19% Similarity=0.142 Sum_probs=68.1
Q ss_pred CCCCCceeEecCCCCCChHHHHHHHHHHc---CCCEEEeechhhhhhhh---------------cccchhhHHHHHHHHH
Q 035561 484 GARAPRGVLIVGERGTGKTSLALAIAAEA---RVPVVNVEAQELEAGLW---------------VGQSASNVRELFQTAR 545 (979)
Q Consensus 484 G~~~P~gVLL~GPPGTGKTtLArAlA~el---g~~~i~Is~sdL~~~~~---------------vG~~~~~Ir~lF~~A~ 545 (979)
|++..+-++++||||||||+||-.++.+. |.+++++++.......+ +...+..+..+....+
T Consensus 51 Glp~G~iteI~G~~GsGKTtLaL~~~~~~~~~g~~v~yId~E~~~~~~~a~~lGvd~~~l~v~~p~~~eq~l~~~~~li~ 130 (321)
T TIGR02012 51 GLPRGRIIEIYGPESSGKTTLALHAIAEAQKAGGTAAFIDAEHALDPVYARKLGVDIDNLLVSQPDTGEQALEIAETLVR 130 (321)
T ss_pred CCcCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEEcccchhHHHHHHHcCCCHHHeEEecCCCHHHHHHHHHHHhh
Confidence 56666778999999999999988776654 66777887644221110 1112223333333345
Q ss_pred hcCCeEEEEcCccccccccccccC-CC--chhhHHHHHHHHhhhcccccCCeEEEEecc
Q 035561 546 DLAPVIIFVEDFDLFAGVRGQFIH-TK--QQDHESFINQLLVELDGFEKQDGVVLMATT 601 (979)
Q Consensus 546 ~~aP~ILfIDEIDaL~~~r~~~~~-~~--~~~~~~iln~LL~~LDg~~~~~~ViVIATT 601 (979)
...+.+|+||-+.++.+...-... +. .....+.+++++..|.+.-...++.+|.|.
T Consensus 131 ~~~~~lIVIDSv~al~~~~E~e~~~g~~~~~~~aR~m~~~lr~L~~~l~~~~~tvi~tN 189 (321)
T TIGR02012 131 SGAVDIIVVDSVAALVPKAEIEGEMGDSHVGLQARLMSQALRKLTGALSKSNTTAIFIN 189 (321)
T ss_pred ccCCcEEEEcchhhhccchhhcccccccchhHHHHHHHHHHHHHHHHHHhCCCEEEEEe
Confidence 567999999999998763211000 01 112234555555555555444556666553
No 263
>COG3283 TyrR Transcriptional regulator of aromatic amino acids metabolism [Transcription / Amino acid transport and metabolism]
Probab=97.54 E-value=0.00012 Score=82.12 Aligned_cols=156 Identities=21% Similarity=0.331 Sum_probs=97.2
Q ss_pred CCCCCCcccCcHHHHHHHHHHHHhhcChhHHHhcCCCCCceeEecCCCCCChHHHHHHHHHHc---CCCEEEeechhhhh
Q 035561 450 PPIPLKDFASVESMREEINEVVAFLQNPSAFQEMGARAPRGVLIVGERGTGKTSLALAIAAEA---RVPVVNVEAQELEA 526 (979)
Q Consensus 450 ~~~~f~DIvGleevke~L~eiV~~L~~p~~f~~lG~~~P~gVLL~GPPGTGKTtLArAlA~el---g~~~i~Is~sdL~~ 526 (979)
....|+.+++.....+.+.+ +..++.-+..+ +||.|..||||-++||+..... ..||+.+||..+-.
T Consensus 199 ~~~~F~~~v~~S~~mk~~v~------qA~k~AmlDAP----LLI~GeTGTGKdLlAkaCH~~S~R~~~pFlalNCA~lPe 268 (511)
T COG3283 199 DVSGFEQIVAVSPKMKHVVE------QAQKLAMLDAP----LLITGETGTGKDLLAKACHLASPRHSKPFLALNCASLPE 268 (511)
T ss_pred cccchHHHhhccHHHHHHHH------HHHHhhccCCC----eEEecCCCchHHHHHHHHhhcCcccCCCeeEeecCCCch
Confidence 45678888888765555432 23344444555 9999999999999999987665 57999999976632
Q ss_pred hh----hccc--chhhHHHHHHHHHhcCCeEEEEcCccccccccccccCCCchhhHHHHHHHHhhhc-c-ccc-------
Q 035561 527 GL----WVGQ--SASNVRELFQTARDLAPVIIFVEDFDLFAGVRGQFIHTKQQDHESFINQLLVELD-G-FEK------- 591 (979)
Q Consensus 527 ~~----~vG~--~~~~Ir~lF~~A~~~aP~ILfIDEIDaL~~~r~~~~~~~~~~~~~iln~LL~~LD-g-~~~------- 591 (979)
+. ..|. +.+.-..+|+.|.. +-+|+|||..+.+ +.-..||.-+. | |..
T Consensus 269 ~~aEsElFG~apg~~gk~GffE~Ang---GTVlLDeIgEmSp--------------~lQaKLLRFL~DGtFRRVGee~Ev 331 (511)
T COG3283 269 DAAESELFGHAPGDEGKKGFFEQANG---GTVLLDEIGEMSP--------------RLQAKLLRFLNDGTFRRVGEDHEV 331 (511)
T ss_pred hHhHHHHhcCCCCCCCccchhhhccC---CeEEeehhhhcCH--------------HHHHHHHHHhcCCceeecCCcceE
Confidence 21 1111 12344567888865 8899999977632 23334555443 3 211
Q ss_pred CCeEEEEecccch--hhchhhhhcCCceee--EeccCCCCHHHHH
Q 035561 592 QDGVVLMATTRNI--KQIDEALQRPGRMDR--IFNLQKPTQSERE 632 (979)
Q Consensus 592 ~~~ViVIATTN~p--e~LDpALlRpgRFd~--~I~~~~Pd~eeR~ 632 (979)
.-.|-||+||..+ +.+...-.|...|.+ ++.+..|...+|.
T Consensus 332 ~vdVRVIcatq~nL~~lv~~g~fReDLfyRLNVLtl~~PpLRer~ 376 (511)
T COG3283 332 HVDVRVICATQVNLVELVQKGKFREDLFYRLNVLTLNLPPLRERP 376 (511)
T ss_pred EEEEEEEecccccHHHHHhcCchHHHHHHHhheeeecCCccccCc
Confidence 1258899998773 333444444333433 5566666666654
No 264
>KOG1968 consensus Replication factor C, subunit RFC1 (large subunit) [Replication, recombination and repair]
Probab=97.54 E-value=0.00017 Score=90.35 Aligned_cols=212 Identities=16% Similarity=0.156 Sum_probs=125.6
Q ss_pred hcccCCCCCCCCcccCcHHHHHHHHHHHHhhcCh--hHHHhcCCCCC-c-eeEecCCCCCChHHHHHHHHHHcCCCEEEe
Q 035561 444 MKRVKNPPIPLKDFASVESMREEINEVVAFLQNP--SAFQEMGARAP-R-GVLIVGERGTGKTSLALAIAAEARVPVVNV 519 (979)
Q Consensus 444 l~~v~~~~~~f~DIvGleevke~L~eiV~~L~~p--~~f~~lG~~~P-~-gVLL~GPPGTGKTtLArAlA~elg~~~i~I 519 (979)
.+..++.+....++.|.......+.....-.+.+ ..|...+.... . .+|++||||+|||+.+.++|.++|..++..
T Consensus 309 ~~~~k~~p~~~k~~~~~~~~~~~~~~~l~~~k~~~~~sy~~~~~~ss~~~~~l~~G~pGigKT~~~h~~~k~~g~~v~E~ 388 (871)
T KOG1968|consen 309 GWTEKYQPTSSKALEGNASSSKKASKWLAKSKDKEKSSYKENEPDSSKKKALLLSGPPGIGKTTAAHKAAKELGFKVVEK 388 (871)
T ss_pred ccccccccccHHhhhcccchhhhhhhHHHhhhccccccccccCcchhhHHHHHhcCCCCCCchhhHhhhhhhcccceeec
Confidence 3444566677788888777666555444332221 12222111111 2 369999999999999999999999999999
Q ss_pred echhhhhhh----hccc--chhhHHHHH---HHHHh-cC-CeEEEEcCccccccccccccCCCchhhHHHHHHHHhhhcc
Q 035561 520 EAQELEAGL----WVGQ--SASNVRELF---QTARD-LA-PVIIFVEDFDLFAGVRGQFIHTKQQDHESFINQLLVELDG 588 (979)
Q Consensus 520 s~sdL~~~~----~vG~--~~~~Ir~lF---~~A~~-~a-P~ILfIDEIDaL~~~r~~~~~~~~~~~~~iln~LL~~LDg 588 (979)
|.++.-+.. -.|. +...+...| ..... +. -.||++||+|.+.. . ....-..+.+++.
T Consensus 389 Nas~~RSk~~l~~~~~~~~~s~si~~~~~~~~~~~~~~~~~~vil~devD~~~~-~-------dRg~v~~l~~l~~---- 456 (871)
T KOG1968|consen 389 NASDVRSKKELLNKLGNATSSHSIKGSKKKKGNRQSLNSDHFLILMDEVDGMFG-E-------DRGGVSKLSSLCK---- 456 (871)
T ss_pred CccccccccHHHhhhhccccccchhhhhcccccccccccceeEEEEeccccccc-h-------hhhhHHHHHHHHH----
Confidence 998654221 0111 122233333 00000 11 24999999998753 1 1111223333332
Q ss_pred cccCCeEEEEecccchhhchhhhhcCCceeeEeccCCCCHHHHHHHHHHHHHhccchhhhhhhhHHHHHHHcCCCCHHHH
Q 035561 589 FEKQDGVVLMATTRNIKQIDEALQRPGRMDRIFNLQKPTQSEREKILRIAAQETMDEELIDLVDWRKVAEKTALLRPIEL 668 (979)
Q Consensus 589 ~~~~~~ViVIATTN~pe~LDpALlRpgRFd~~I~~~~Pd~eeR~~IL~~~l~~~~~~~l~~dvdL~~LA~~T~GfsgaDL 668 (979)
...+-++.+||..+.....-+. |-+..++|+.|+.+.+..-+...+.... ...++-.++.+...+ ++||
T Consensus 457 ---ks~~Piv~~cndr~~p~sr~~~--~~~~~l~f~kP~~~~i~~ri~si~~se~--~ki~~~~l~~~s~~~----~~Di 525 (871)
T KOG1968|consen 457 ---KSSRPLVCTCNDRNLPKSRALS--RACSDLRFSKPSSELIRSRIMSICKSEG--IKISDDVLEEISKLS----GGDI 525 (871)
T ss_pred ---hccCCeEEEecCCCCccccchh--hhcceeeecCCcHHHHHhhhhhhhcccc--eecCcHHHHHHHHhc----ccCH
Confidence 2345678888886655543333 4447889999999998776666665432 224455677777766 5699
Q ss_pred HHHHHHHhhh
Q 035561 669 KLVPVALEGS 678 (979)
Q Consensus 669 ~~Lv~aa~~a 678 (979)
.+....++..
T Consensus 526 R~~i~~lq~~ 535 (871)
T KOG1968|consen 526 RQIIMQLQFW 535 (871)
T ss_pred HHHHHHHhhh
Confidence 8887666554
No 265
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs. A related protein is found in archaea.
Probab=97.51 E-value=0.00043 Score=70.85 Aligned_cols=31 Identities=35% Similarity=0.472 Sum_probs=25.7
Q ss_pred eEecCCCCCChHHHHHHHHHHc---CCCEEEeec
Q 035561 491 VLIVGERGTGKTSLALAIAAEA---RVPVVNVEA 521 (979)
Q Consensus 491 VLL~GPPGTGKTtLArAlA~el---g~~~i~Is~ 521 (979)
+|++||||||||+++..++.+. |.++++++.
T Consensus 2 ~li~G~~G~GKT~l~~~~~~~~~~~g~~v~~~s~ 35 (187)
T cd01124 2 TLLSGGPGTGKTTFALQFLYAGLARGEPGLYVTL 35 (187)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHHCCCcEEEEEC
Confidence 7899999999999999887654 677777765
No 266
>KOG0478 consensus DNA replication licensing factor, MCM4 component [Replication, recombination and repair]
Probab=97.51 E-value=0.0003 Score=84.37 Aligned_cols=132 Identities=22% Similarity=0.282 Sum_probs=74.7
Q ss_pred CCCceeEecCCCCCChHHHHHHHHHHcCCCEEEeechhhhhhhhcccchhhH-----HHHHHHHH---hcCCeEEEEcCc
Q 035561 486 RAPRGVLIVGERGTGKTSLALAIAAEARVPVVNVEAQELEAGLWVGQSASNV-----RELFQTAR---DLAPVIIFVEDF 557 (979)
Q Consensus 486 ~~P~gVLL~GPPGTGKTtLArAlA~elg~~~i~Is~sdL~~~~~vG~~~~~I-----r~lF~~A~---~~aP~ILfIDEI 557 (979)
+..-+|||+|-||||||-+.+.+++-+..-.+ .++-. +.-+|.++... +++..+.. -...+|=+|||+
T Consensus 460 R~~INILL~GDPGtsKSqlLqyv~~l~pRg~y-TSGkG---sSavGLTayVtrd~dtkqlVLesGALVLSD~GiCCIDEF 535 (804)
T KOG0478|consen 460 RGDINILLVGDPGTSKSQLLQYCHRLLPRGVY-TSGKG---SSAVGLTAYVTKDPDTRQLVLESGALVLSDNGICCIDEF 535 (804)
T ss_pred cccceEEEecCCCcCHHHHHHHHHHhCCccee-ecCCc---cchhcceeeEEecCccceeeeecCcEEEcCCceEEchhh
Confidence 33468999999999999999999997754433 22211 01122221111 11111111 123578899999
Q ss_pred cccccccccccCCCchhhHHHHHHHHhhhc---------cc--ccCCeEEEEecccch-----------h--hchhhhhc
Q 035561 558 DLFAGVRGQFIHTKQQDHESFINQLLVELD---------GF--EKQDGVVLMATTRNI-----------K--QIDEALQR 613 (979)
Q Consensus 558 DaL~~~r~~~~~~~~~~~~~iln~LL~~LD---------g~--~~~~~ViVIATTN~p-----------e--~LDpALlR 613 (979)
|.+.-+ ... -|+..|+ |+ .-+-+.-|+|++|.. + .|+|.|++
T Consensus 536 DKM~dS-----------trS---vLhEvMEQQTvSIAKAGII~sLNAR~SVLAaANP~~skynp~k~i~eNI~LpptLLS 601 (804)
T KOG0478|consen 536 DKMSDS-----------TRS---VLHEVMEQQTLSIAKAGIIASLNARCSVLAAANPIRSKYNPNKSIIENINLPPTLLS 601 (804)
T ss_pred hhhhHH-----------HHH---HHHHHHHHhhhhHhhcceeeeccccceeeeeeccccccCCCCCchhhccCCChhhhh
Confidence 988311 111 2222222 21 113346788999952 1 47999999
Q ss_pred CCceeeE-eccCCCCHHHHHHHHHH
Q 035561 614 PGRMDRI-FNLQKPTQSEREKILRI 637 (979)
Q Consensus 614 pgRFd~~-I~~~~Pd~eeR~~IL~~ 637 (979)
|||.+ +-++.||+..=+.|-.+
T Consensus 602 --RFDLIylllD~~DE~~Dr~La~H 624 (804)
T KOG0478|consen 602 --RFDLIFLLLDKPDERSDRRLADH 624 (804)
T ss_pred --hhcEEEEEecCcchhHHHHHHHH
Confidence 99986 45677776633334333
No 267
>KOG2543 consensus Origin recognition complex, subunit 5 [Replication, recombination and repair]
Probab=97.50 E-value=0.0014 Score=74.66 Aligned_cols=162 Identities=19% Similarity=0.204 Sum_probs=93.3
Q ss_pred CcccCcHHHHHHHHHHHHhhcChhHHHhcCCCCCceeEecCCCCCChHHHHHHHHHHcCCCEEEeechhhhhhh------
Q 035561 455 KDFASVESMREEINEVVAFLQNPSAFQEMGARAPRGVLIVGERGTGKTSLALAIAAEARVPVVNVEAQELEAGL------ 528 (979)
Q Consensus 455 ~DIvGleevke~L~eiV~~L~~p~~f~~lG~~~P~gVLL~GPPGTGKTtLArAlA~elg~~~i~Is~sdL~~~~------ 528 (979)
..+.+-+.....|..++ .+. .-..|..+.|||..|||||.+++.+-+.++.+.+.++|-+.+.-.
T Consensus 6 ~~v~~Re~qi~~L~~Ll---g~~------~~~~PS~~~iyG~sgTGKT~~~r~~l~~~n~~~vw~n~~ecft~~~lle~I 76 (438)
T KOG2543|consen 6 PNVPCRESQIRRLKSLL---GNN------SCTIPSIVHIYGHSGTGKTYLVRQLLRKLNLENVWLNCVECFTYAILLEKI 76 (438)
T ss_pred cCccchHHHHHHHHHHh---CCC------CcccceeEEEeccCCCchhHHHHHHHhhcCCcceeeehHHhccHHHHHHHH
Confidence 34556666666665443 111 125678899999999999999999999999999999986653211
Q ss_pred --------hcccc----hhh---HHHHHHH--HHhc--CCeEEEEcCccccccccccccCCCchhhHHHHHHHHhhhccc
Q 035561 529 --------WVGQS----ASN---VRELFQT--ARDL--APVIIFVEDFDLFAGVRGQFIHTKQQDHESFINQLLVELDGF 589 (979)
Q Consensus 529 --------~vG~~----~~~---Ir~lF~~--A~~~--aP~ILfIDEIDaL~~~r~~~~~~~~~~~~~iln~LL~~LDg~ 589 (979)
..|.. ..+ +...|.+ +..+ ....|++|.+|.|. +.....++.|+..-+-.
T Consensus 77 L~~~~~~d~dg~~~~~~~en~~d~i~~l~q~~~~t~~d~~~~liLDnad~lr-----------D~~a~ll~~l~~L~el~ 145 (438)
T KOG2543|consen 77 LNKSQLADKDGDKVEGDAENFSDFIYLLVQWPAATNRDQKVFLILDNADALR-----------DMDAILLQCLFRLYELL 145 (438)
T ss_pred HHHhccCCCchhhhhhHHHHHHHHHHHHHhhHHhhccCceEEEEEcCHHhhh-----------ccchHHHHHHHHHHHHh
Confidence 01111 111 2223333 2222 35689999999983 11223444444332222
Q ss_pred ccCCeEEEEecccchhhchhhhhcCCcee-eEeccCCCCHHHHHHHHHHHH
Q 035561 590 EKQDGVVLMATTRNIKQIDEALQRPGRMD-RIFNLQKPTQSEREKILRIAA 639 (979)
Q Consensus 590 ~~~~~ViVIATTN~pe~LDpALlRpgRFd-~~I~~~~Pd~eeR~~IL~~~l 639 (979)
....-+++...+-.+..-. .+-|-++ ..++||.|+.++..+|+..--
T Consensus 146 ~~~~i~iils~~~~e~~y~---~n~g~~~i~~l~fP~Ys~~e~~~Il~~~~ 193 (438)
T KOG2543|consen 146 NEPTIVIILSAPSCEKQYL---INTGTLEIVVLHFPQYSVEETQVILSRDN 193 (438)
T ss_pred CCCceEEEEeccccHHHhh---cccCCCCceEEecCCCCHHHHHHHHhcCC
Confidence 2222233333333222211 1223333 478999999999999997643
No 268
>COG5271 MDN1 AAA ATPase containing von Willebrand factor type A (vWA) domain [General function prediction only]
Probab=97.48 E-value=0.00028 Score=89.96 Aligned_cols=134 Identities=17% Similarity=0.222 Sum_probs=88.7
Q ss_pred CceeEecCCCCCChHHHHHHHHHHcCCCEEEeechhh------hhhhhccc--chhhHH-HHHHHHHhcCCeEEEEcCcc
Q 035561 488 PRGVLIVGERGTGKTSLALAIAAEARVPVVNVEAQEL------EAGLWVGQ--SASNVR-ELFQTARDLAPVIIFVEDFD 558 (979)
Q Consensus 488 P~gVLL~GPPGTGKTtLArAlA~elg~~~i~Is~sdL------~~~~~vG~--~~~~Ir-~lF~~A~~~aP~ILfIDEID 558 (979)
.+++||-|.||+|||++..|+|+..|-.++.|+.|+- +.+..+++ ++-..+ .-|-.|.+ ...-+++||+.
T Consensus 1543 ~kpilLEGsPGVGKTSlItaLAr~tG~kliRINLSeQTdL~DLfGsd~Pve~~Gef~w~dapfL~amr-~G~WVlLDEiN 1621 (4600)
T COG5271 1543 GKPILLEGSPGVGKTSLITALARKTGKKLIRINLSEQTDLCDLFGSDLPVEEGGEFRWMDAPFLHAMR-DGGWVLLDEIN 1621 (4600)
T ss_pred CCceeecCCCCccHHHHHHHHHHHhcCceEEeeccccchHHHHhCCCCCcccCceeEecccHHHHHhh-cCCEEEeehhh
Confidence 3569999999999999999999999999999998642 21112222 222222 23444444 45778899995
Q ss_pred ccccccccccCCCchhhHHHHHHHHhhhcc------------cccCCeEEEEecccchh------hchhhhhcCCceeeE
Q 035561 559 LFAGVRGQFIHTKQQDHESFINQLLVELDG------------FEKQDGVVLMATTRNIK------QIDEALQRPGRMDRI 620 (979)
Q Consensus 559 aL~~~r~~~~~~~~~~~~~iln~LL~~LDg------------~~~~~~ViVIATTN~pe------~LDpALlRpgRFd~~ 620 (979)
.- ...++.-|-.++|. |.-+++..|+||-|.-+ .||.++.. ||. +
T Consensus 1622 La--------------SQSVlEGLNacLDhR~eayIPEld~~f~~HpnfrVFAaqNPq~qggGRKgLPkSF~n--RFs-v 1684 (4600)
T COG5271 1622 LA--------------SQSVLEGLNACLDHRREAYIPELDKTFDVHPNFRVFAAQNPQDQGGGRKGLPKSFLN--RFS-V 1684 (4600)
T ss_pred hh--------------HHHHHHHHHHHHhhccccccccccceeeccCCeeeeeecCchhcCCCcccCCHHHhh--hhh-e
Confidence 22 22344444444442 35567889999988743 58999999 995 5
Q ss_pred eccCCCCHHHHHHHHHHHH
Q 035561 621 FNLQKPTQSEREKILRIAA 639 (979)
Q Consensus 621 I~~~~Pd~eeR~~IL~~~l 639 (979)
|.+...+.++...|.....
T Consensus 1685 V~~d~lt~dDi~~Ia~~~y 1703 (4600)
T COG5271 1685 VKMDGLTTDDITHIANKMY 1703 (4600)
T ss_pred EEecccccchHHHHHHhhC
Confidence 6666666666666555443
No 269
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A ....
Probab=97.48 E-value=7.2e-05 Score=71.30 Aligned_cols=31 Identities=32% Similarity=0.665 Sum_probs=27.3
Q ss_pred eEecCCCCCChHHHHHHHHHHcCCCEEEeec
Q 035561 491 VLIVGERGTGKTSLALAIAAEARVPVVNVEA 521 (979)
Q Consensus 491 VLL~GPPGTGKTtLArAlA~elg~~~i~Is~ 521 (979)
|+|.|||||||||+|+.+|+.+|.+++.++.
T Consensus 2 I~I~G~~gsGKST~a~~La~~~~~~~i~~d~ 32 (121)
T PF13207_consen 2 IIISGPPGSGKSTLAKELAERLGFPVISMDD 32 (121)
T ss_dssp EEEEESTTSSHHHHHHHHHHHHTCEEEEEHH
T ss_pred EEEECCCCCCHHHHHHHHHHHHCCeEEEecc
Confidence 7899999999999999999999988765543
No 270
>KOG2383 consensus Predicted ATPase [General function prediction only]
Probab=97.47 E-value=0.00045 Score=78.84 Aligned_cols=159 Identities=18% Similarity=0.212 Sum_probs=82.8
Q ss_pred CCCCceeEecCCCCCChHHHHHHHHHHcCCC--EEEeechhhhhhh---------h-----cccchh----hHHHHHHHH
Q 035561 485 ARAPRGVLIVGERGTGKTSLALAIAAEARVP--VVNVEAQELEAGL---------W-----VGQSAS----NVRELFQTA 544 (979)
Q Consensus 485 ~~~P~gVLL~GPPGTGKTtLArAlA~elg~~--~i~Is~sdL~~~~---------~-----vG~~~~----~Ir~lF~~A 544 (979)
-.+|+|+.|||.-|||||+|.-..-..+--. =-.|...+++... - .|.+.+ -+.-+-++.
T Consensus 111 ~~~PkGlYlYG~VGcGKTmLMDlFy~~~~~i~rkqRvHFh~fM~~VH~r~H~~k~~~~~~~~~~a~~~~~Dpl~~vA~eI 190 (467)
T KOG2383|consen 111 PGPPKGLYLYGSVGCGKTMLMDLFYDALPPIWRKQRVHFHGFMLSVHKRMHELKQEQGAEKPGYAKSWEIDPLPVVADEI 190 (467)
T ss_pred CCCCceEEEecccCcchhHHHHHHhhcCCchhhhhhhhHHHHHHHHHHHHHHHHHhccccCccccccccCCccHHHHHHH
Confidence 3468999999999999999999887554210 0011111221000 0 000000 011111111
Q ss_pred HhcCCeEEEEcCccccccccccccCCCchhhHHHHHHHHhhhcccccCCeEEEEecccc-hhhchhhhhcCCceeeEecc
Q 035561 545 RDLAPVIIFVEDFDLFAGVRGQFIHTKQQDHESFINQLLVELDGFEKQDGVVLMATTRN-IKQIDEALQRPGRMDRIFNL 623 (979)
Q Consensus 545 ~~~aP~ILfIDEIDaL~~~r~~~~~~~~~~~~~iln~LL~~LDg~~~~~~ViVIATTN~-pe~LDpALlRpgRFd~~I~~ 623 (979)
. ..-++|++||+..- +-...-+++.|...|= .++|+++||+|+ |++|-..=+. +..++
T Consensus 191 a-~ea~lLCFDEfQVT-----------DVADAmiL~rLf~~Lf----~~GvVlvATSNR~P~dLYknGlQ-----R~~F~ 249 (467)
T KOG2383|consen 191 A-EEAILLCFDEFQVT-----------DVADAMILKRLFEHLF----KNGVVLVATSNRAPEDLYKNGLQ-----RENFI 249 (467)
T ss_pred h-hhceeeeechhhhh-----------hHHHHHHHHHHHHHHH----hCCeEEEEeCCCChHHHhhcchh-----hhhhh
Confidence 1 12489999998521 1112234445444331 348999999999 7777543222 23344
Q ss_pred CCCCHHHHHHHHHHHHHhccchhhhhhhhHHHHHHHcC---CCCHH-HHHHHHH
Q 035561 624 QKPTQSEREKILRIAAQETMDEELIDLVDWRKVAEKTA---LLRPI-ELKLVPV 673 (979)
Q Consensus 624 ~~Pd~eeR~~IL~~~l~~~~~~~l~~dvdL~~LA~~T~---Gfsga-DL~~Lv~ 673 (979)
| -..+|+.+++-. .+.+.+|+...++-.+ -|.+. |.+.++.
T Consensus 250 P------fI~~L~~rc~vi---~ldS~vDYR~~~~~~~~~~yf~~~~d~~~~l~ 294 (467)
T KOG2383|consen 250 P------FIALLEERCKVI---QLDSGVDYRRKAKSAGENYYFISETDVETVLK 294 (467)
T ss_pred h------HHHHHHHhheEE---ecCCccchhhccCCCCceeEecChhhHHHHHH
Confidence 4 356777777654 5566788883332211 13333 6666553
No 271
>KOG1051 consensus Chaperone HSP104 and related ATP-dependent Clp proteases [Posttranslational modification, protein turnover, chaperones]
Probab=97.47 E-value=0.0008 Score=84.17 Aligned_cols=163 Identities=22% Similarity=0.315 Sum_probs=107.8
Q ss_pred CCcccCc-HHHHHHHHHHHHhhcChhHHHhcCCCCCceeEecCCCCCChHHHHHHHHHHc----------CCCEEEeech
Q 035561 454 LKDFASV-ESMREEINEVVAFLQNPSAFQEMGARAPRGVLIVGERGTGKTSLALAIAAEA----------RVPVVNVEAQ 522 (979)
Q Consensus 454 f~DIvGl-eevke~L~eiV~~L~~p~~f~~lG~~~P~gVLL~GPPGTGKTtLArAlA~el----------g~~~i~Is~s 522 (979)
++-++|- + ++++.+++-|.. +..++-+|.|.||+|||.++.-+|+.. +..++.++..
T Consensus 185 ldPvigr~d---eeirRvi~iL~R---------rtk~NPvLVG~~gvgktaiv~gla~ri~~G~vp~~l~~~~l~~l~~g 252 (898)
T KOG1051|consen 185 LDPVIGRHD---EEIRRVIEILSR---------KTKNNPVLVGEPGVGKTAIVEGLAQRIATGDVPETLKDKKLIALDFG 252 (898)
T ss_pred CCCccCCch---HHHHHHHHHHhc---------cCCCCceEEecCCCCchhHHHHHHHHhhcCCCCccccccceEEEEhh
Confidence 5667776 4 344444444322 233678999999999999999999865 3456777766
Q ss_pred hhhh-hhhcccchhhHHHHHHHHH-hcCCeEEEEcCccccccccccccCCCchhhHHHHHHHHhhhcccccCCeEEEEec
Q 035561 523 ELEA-GLWVGQSASNVRELFQTAR-DLAPVIIFVEDFDLFAGVRGQFIHTKQQDHESFINQLLVELDGFEKQDGVVLMAT 600 (979)
Q Consensus 523 dL~~-~~~vG~~~~~Ir~lF~~A~-~~aP~ILfIDEIDaL~~~r~~~~~~~~~~~~~iln~LL~~LDg~~~~~~ViVIAT 600 (979)
.+.+ .++.|+.+.+++.+.+.+. .....||||||++-+.+.... .......|.|--.+ ..+++-+|+|
T Consensus 253 ~l~aGa~~rge~E~rlk~l~k~v~~~~~gvILfigelh~lvg~g~~------~~~~d~~nlLkp~L----~rg~l~~IGa 322 (898)
T KOG1051|consen 253 SLVAGAKRRGEFEERLKELLKEVESGGGGVILFLGELHWLVGSGSN------YGAIDAANLLKPLL----ARGGLWCIGA 322 (898)
T ss_pred hcccCcccchHHHHHHHHHHHHHhcCCCcEEEEecceeeeecCCCc------chHHHHHHhhHHHH----hcCCeEEEec
Confidence 5543 3578899999999999988 445689999999998764332 11222333322222 2233666665
Q ss_pred ccchh-----hchhhhhcCCceeeEeccCCCCHHHHHHHHHHHHHh
Q 035561 601 TRNIK-----QIDEALQRPGRMDRIFNLQKPTQSEREKILRIAAQE 641 (979)
Q Consensus 601 TN~pe-----~LDpALlRpgRFd~~I~~~~Pd~eeR~~IL~~~l~~ 641 (979)
|..-+ .-||++-| ||+ .+.++.|+.+.-..||+.....
T Consensus 323 tT~e~Y~k~iekdPalEr--rw~-l~~v~~pS~~~~~~iL~~l~~~ 365 (898)
T KOG1051|consen 323 TTLETYRKCIEKDPALER--RWQ-LVLVPIPSVENLSLILPGLSER 365 (898)
T ss_pred ccHHHHHHHHhhCcchhh--Ccc-eeEeccCcccchhhhhhhhhhh
Confidence 55422 34999999 997 5578899988877777765443
No 272
>COG1373 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=97.45 E-value=0.0011 Score=77.31 Aligned_cols=124 Identities=17% Similarity=0.217 Sum_probs=75.3
Q ss_pred eeEecCCCCCChHHHHHHHHHHcCCCEEEeechhhhhhhhcccchhhHHHHHHHHHhcCCeEEEEcCccccccccccccC
Q 035561 490 GVLIVGERGTGKTSLALAIAAEARVPVVNVEAQELEAGLWVGQSASNVRELFQTARDLAPVIIFVEDFDLFAGVRGQFIH 569 (979)
Q Consensus 490 gVLL~GPPGTGKTtLArAlA~elg~~~i~Is~sdL~~~~~vG~~~~~Ir~lF~~A~~~aP~ILfIDEIDaL~~~r~~~~~ 569 (979)
-++|+||.+|||||+++.+.+...-..++++..|..... .........+..+.....+.+|||||+.+
T Consensus 39 i~~i~GpR~~GKTtll~~l~~~~~~~~iy~~~~d~~~~~---~~l~d~~~~~~~~~~~~~~yifLDEIq~v--------- 106 (398)
T COG1373 39 IILILGPRQVGKTTLLKLLIKGLLEEIIYINFDDLRLDR---IELLDLLRAYIELKEREKSYIFLDEIQNV--------- 106 (398)
T ss_pred EEEEECCccccHHHHHHHHHhhCCcceEEEEecchhcch---hhHHHHHHHHHHhhccCCceEEEecccCc---------
Confidence 799999999999999999998886656777766654221 11122222233333324589999999866
Q ss_pred CCchhhHHHHHHHHhhhcccccCCeEEEEecccchhhchhhhhcCCceeeEeccCCCCHHHHHHH
Q 035561 570 TKQQDHESFINQLLVELDGFEKQDGVVLMATTRNIKQIDEALQRPGRMDRIFNLQKPTQSEREKI 634 (979)
Q Consensus 570 ~~~~~~~~iln~LL~~LDg~~~~~~ViVIATTN~pe~LDpALlRpgRFd~~I~~~~Pd~eeR~~I 634 (979)
......+..+. |.... .+++.+++...-....+-.-+||. ..+.+.+.+..+...+
T Consensus 107 ---~~W~~~lk~l~---d~~~~--~v~itgsss~ll~~~~~~~L~GR~-~~~~l~PlSF~Efl~~ 162 (398)
T COG1373 107 ---PDWERALKYLY---DRGNL--DVLITGSSSSLLSKEISESLAGRG-KDLELYPLSFREFLKL 162 (398)
T ss_pred ---hhHHHHHHHHH---ccccc--eEEEECCchhhhccchhhhcCCCc-eeEEECCCCHHHHHhh
Confidence 22455555554 32211 345544444433222232335684 6788888999988653
No 273
>COG3267 ExeA Type II secretory pathway, component ExeA (predicted ATPase) [Intracellular trafficking and secretion]
Probab=97.44 E-value=0.003 Score=68.78 Aligned_cols=175 Identities=22% Similarity=0.219 Sum_probs=103.6
Q ss_pred eEecCCCCCChHHHHHHHHHHcCC---CEEEeechhhhh----hhhc----ccchhhH--------HHHHHHHH-hcCCe
Q 035561 491 VLIVGERGTGKTSLALAIAAEARV---PVVNVEAQELEA----GLWV----GQSASNV--------RELFQTAR-DLAPV 550 (979)
Q Consensus 491 VLL~GPPGTGKTtLArAlA~elg~---~~i~Is~sdL~~----~~~v----G~~~~~I--------r~lF~~A~-~~aP~ 550 (979)
+.++|+-|||||+++|++...++- -.++++...+.. ..+. +.....+ +.+....+ ...|.
T Consensus 54 ~~vtGevGsGKTv~~Ral~~s~~~d~~~~v~i~~~~~s~~~~~~ai~~~l~~~p~~~~~~~~e~~~~~L~al~~~g~r~v 133 (269)
T COG3267 54 LAVTGEVGSGKTVLRRALLASLNEDQVAVVVIDKPTLSDATLLEAIVADLESQPKVNVNAVLEQIDRELAALVKKGKRPV 133 (269)
T ss_pred EEEEecCCCchhHHHHHHHHhcCCCceEEEEecCcchhHHHHHHHHHHHhccCccchhHHHHHHHHHHHHHHHHhCCCCe
Confidence 678999999999999988777642 233444322210 1111 1111122 22222222 34579
Q ss_pred EEEEcCccccccccccccCCCchhhHHHHHHHHhhhcccccCCeEEEEecccchhhc-h---hhhhcCCceeeEeccCCC
Q 035561 551 IIFVEDFDLFAGVRGQFIHTKQQDHESFINQLLVELDGFEKQDGVVLMATTRNIKQI-D---EALQRPGRMDRIFNLQKP 626 (979)
Q Consensus 551 ILfIDEIDaL~~~r~~~~~~~~~~~~~iln~LL~~LDg~~~~~~ViVIATTN~pe~L-D---pALlRpgRFd~~I~~~~P 626 (979)
++++||++.+... .-..+..|.+.-++..+.-+++++|-..--..+ - ..+-. |++..|++++.
T Consensus 134 ~l~vdEah~L~~~-----------~le~Lrll~nl~~~~~~~l~ivL~Gqp~L~~~lr~~~l~e~~~--R~~ir~~l~P~ 200 (269)
T COG3267 134 VLMVDEAHDLNDS-----------ALEALRLLTNLEEDSSKLLSIVLIGQPKLRPRLRLPVLRELEQ--RIDIRIELPPL 200 (269)
T ss_pred EEeehhHhhhChh-----------HHHHHHHHHhhcccccCceeeeecCCcccchhhchHHHHhhhh--eEEEEEecCCc
Confidence 9999999988421 122233333322333333456777654321111 1 12333 78877999999
Q ss_pred CHHHHHHHHHHHHHhcc-chhhhhhhhHHHHHHHcCCCCHHHHHHHHHHHhhhh
Q 035561 627 TQSEREKILRIAAQETM-DEELIDLVDWRKVAEKTALLRPIELKLVPVALEGSA 679 (979)
Q Consensus 627 d~eeR~~IL~~~l~~~~-~~~l~~dvdL~~LA~~T~GfsgaDL~~Lv~aa~~aa 679 (979)
+.++-...++.+++... ++++.++-.+..++.++.| .|.-+.++|..+...+
T Consensus 201 ~~~~t~~yl~~~Le~a~~~~~l~~~~a~~~i~~~sqg-~P~lin~~~~~Al~~a 253 (269)
T COG3267 201 TEAETGLYLRHRLEGAGLPEPLFSDDALLLIHEASQG-IPRLINNLATLALDAA 253 (269)
T ss_pred ChHHHHHHHHHHHhccCCCcccCChhHHHHHHHHhcc-chHHHHHHHHHHHHHH
Confidence 99999999999998653 2455666677888888888 6677888875554443
No 274
>KOG2228 consensus Origin recognition complex, subunit 4 [Replication, recombination and repair]
Probab=97.44 E-value=0.001 Score=74.72 Aligned_cols=163 Identities=17% Similarity=0.296 Sum_probs=96.9
Q ss_pred CcccCcHHHHHHHHHHHHh-hcChhHHHhcCCCCCceeEecCCCCCChHHHHHHH---HHHcCCCEEEeechhhhh-hh-
Q 035561 455 KDFASVESMREEINEVVAF-LQNPSAFQEMGARAPRGVLIVGERGTGKTSLALAI---AAEARVPVVNVEAQELEA-GL- 528 (979)
Q Consensus 455 ~DIvGleevke~L~eiV~~-L~~p~~f~~lG~~~P~gVLL~GPPGTGKTtLArAl---A~elg~~~i~Is~sdL~~-~~- 528 (979)
-.+.|..+..+.|.+++.. ... | ...++++.||.|+|||++.... +++.|-+++.+....... ++
T Consensus 24 ~~l~g~~~~~~~l~~~lkqt~~~-------g--EsnsviiigprgsgkT~li~~~Ls~~q~~~E~~l~v~Lng~~~~dk~ 94 (408)
T KOG2228|consen 24 INLFGVQDEQKHLSELLKQTILH-------G--ESNSVIIIGPRGSGKTILIDTRLSDIQENGENFLLVRLNGELQTDKI 94 (408)
T ss_pred cceeehHHHHHHHHHHHHHHHHh-------c--CCCceEEEccCCCCceEeeHHHHhhHHhcCCeEEEEEECccchhhHH
Confidence 3467888888888877755 111 1 2356999999999999865543 336677777665432210 11
Q ss_pred ------------------hcccchhhHHHHHHHHHhc-----CCeEEEEcCccccccccccccCCCchhhHHHHHHHHhh
Q 035561 529 ------------------WVGQSASNVRELFQTARDL-----APVIIFVEDFDLFAGVRGQFIHTKQQDHESFINQLLVE 585 (979)
Q Consensus 529 ------------------~vG~~~~~Ir~lF~~A~~~-----aP~ILfIDEIDaL~~~r~~~~~~~~~~~~~iln~LL~~ 585 (979)
-.|....++..+....+.. .+.|.++||+|.+++.. ....+-.|+..
T Consensus 95 al~~I~rql~~e~~~~~k~~gsfte~l~~lL~~L~~~~~~t~~~ViFIldEfDlf~~h~----------rQtllYnlfDi 164 (408)
T KOG2228|consen 95 ALKGITRQLALELNRIVKSFGSFTENLSKLLEALKKGDETTSGKVIFILDEFDLFAPHS----------RQTLLYNLFDI 164 (408)
T ss_pred HHHHHHHHHHHHHhhhheeecccchhHHHHHHHHhcCCCCCCceEEEEeehhhccccch----------hhHHHHHHHHH
Confidence 1233333444444443321 23456677999886421 11222233322
Q ss_pred hcccccCCeEEEEecccch---hhchhhhhcCCceeeE-eccCCC-CHHHHHHHHHHHHH
Q 035561 586 LDGFEKQDGVVLMATTRNI---KQIDEALQRPGRMDRI-FNLQKP-TQSEREKILRIAAQ 640 (979)
Q Consensus 586 LDg~~~~~~ViVIATTN~p---e~LDpALlRpgRFd~~-I~~~~P-d~eeR~~IL~~~l~ 640 (979)
-. ....+++||+.|.+. +.|...+.+ ||.+. |+++++ +.++-..+++..+.
T Consensus 165 sq--s~r~Piciig~Ttrld~lE~LEKRVKS--RFshr~I~m~~~~~l~~yv~l~r~ll~ 220 (408)
T KOG2228|consen 165 SQ--SARAPICIIGVTTRLDILELLEKRVKS--RFSHRVIFMLPSLPLGDYVDLYRKLLS 220 (408)
T ss_pred Hh--hcCCCeEEEEeeccccHHHHHHHHHHh--hcccceeeccCCCChHHHHHHHHHHhc
Confidence 11 234568888888775 456788888 99975 666554 67888888888773
No 275
>PRK00131 aroK shikimate kinase; Reviewed
Probab=97.41 E-value=0.00014 Score=73.25 Aligned_cols=35 Identities=14% Similarity=0.347 Sum_probs=30.8
Q ss_pred CCCceeEecCCCCCChHHHHHHHHHHcCCCEEEee
Q 035561 486 RAPRGVLIVGERGTGKTSLALAIAAEARVPVVNVE 520 (979)
Q Consensus 486 ~~P~gVLL~GPPGTGKTtLArAlA~elg~~~i~Is 520 (979)
++|..|+|+|+||||||++|+++|+.++.+++..+
T Consensus 2 ~~~~~i~l~G~~GsGKstla~~La~~l~~~~~d~d 36 (175)
T PRK00131 2 LKGPNIVLIGFMGAGKSTIGRLLAKRLGYDFIDTD 36 (175)
T ss_pred CCCCeEEEEcCCCCCHHHHHHHHHHHhCCCEEECh
Confidence 35678999999999999999999999999888543
No 276
>PRK11823 DNA repair protein RadA; Provisional
Probab=97.41 E-value=0.00072 Score=79.85 Aligned_cols=79 Identities=24% Similarity=0.398 Sum_probs=57.4
Q ss_pred CCCCCceeEecCCCCCChHHHHHHHHHHc---CCCEEEeechhhhhhh-----hcc--------cchhhHHHHHHHHHhc
Q 035561 484 GARAPRGVLIVGERGTGKTSLALAIAAEA---RVPVVNVEAQELEAGL-----WVG--------QSASNVRELFQTARDL 547 (979)
Q Consensus 484 G~~~P~gVLL~GPPGTGKTtLArAlA~el---g~~~i~Is~sdL~~~~-----~vG--------~~~~~Ir~lF~~A~~~ 547 (979)
|+.+..-+||+|+||+|||+++..+|... +.++++++..+-.... -.| ..+..+..+++.....
T Consensus 76 Gi~~Gs~~lI~G~pG~GKTtL~lq~a~~~a~~g~~vlYvs~Ees~~qi~~ra~rlg~~~~~l~~~~e~~l~~i~~~i~~~ 155 (446)
T PRK11823 76 GLVPGSVVLIGGDPGIGKSTLLLQVAARLAAAGGKVLYVSGEESASQIKLRAERLGLPSDNLYLLAETNLEAILATIEEE 155 (446)
T ss_pred CccCCEEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEEccccHHHHHHHHHHcCCChhcEEEeCCCCHHHHHHHHHhh
Confidence 56666778999999999999999998865 6788888875432110 011 1223456677777777
Q ss_pred CCeEEEEcCcccccc
Q 035561 548 APVIIFVEDFDLFAG 562 (979)
Q Consensus 548 aP~ILfIDEIDaL~~ 562 (979)
.|.+|+||.+..+..
T Consensus 156 ~~~lVVIDSIq~l~~ 170 (446)
T PRK11823 156 KPDLVVIDSIQTMYS 170 (446)
T ss_pred CCCEEEEechhhhcc
Confidence 899999999998864
No 277
>TIGR02858 spore_III_AA stage III sporulation protein AA. Members of this protein are the stage III sporulation protein AA, encoded by one of several genes in the spoIIIA locus. It seems that this protein is found in a species if and only if that species is capable of endospore formation.
Probab=97.40 E-value=0.00049 Score=76.14 Aligned_cols=113 Identities=25% Similarity=0.366 Sum_probs=66.0
Q ss_pred ceeEecCCCCCChHHHHHHHHHHcCC----------CEEEee-chhhhhhhh-------cc------cchhhHHHHHHHH
Q 035561 489 RGVLIVGERGTGKTSLALAIAAEARV----------PVVNVE-AQELEAGLW-------VG------QSASNVRELFQTA 544 (979)
Q Consensus 489 ~gVLL~GPPGTGKTtLArAlA~elg~----------~~i~Is-~sdL~~~~~-------vG------~~~~~Ir~lF~~A 544 (979)
.++++.||||+||||+.+++++...- .+..++ ..++. ..+ +| ....+...++..+
T Consensus 112 ~~~~i~g~~g~GKttl~~~l~~~~~~~~G~i~~~g~~v~~~d~~~ei~-~~~~~~~q~~~~~r~~v~~~~~k~~~~~~~i 190 (270)
T TIGR02858 112 LNTLIISPPQCGKTTLLRDLARILSTGISQLGLRGKKVGIVDERSEIA-GCVNGVPQHDVGIRTDVLDGCPKAEGMMMLI 190 (270)
T ss_pred eEEEEEcCCCCCHHHHHHHHhCccCCCCceEEECCEEeecchhHHHHH-HHhcccccccccccccccccchHHHHHHHHH
Confidence 58999999999999999999998732 222222 12221 111 11 1112234566677
Q ss_pred HhcCCeEEEEcCccccccccccccCCCchhhHHHHHHHHhhhcccccCCeEEEEecccchhhchhh--------hhcCCc
Q 035561 545 RDLAPVIIFVEDFDLFAGVRGQFIHTKQQDHESFINQLLVELDGFEKQDGVVLMATTRNIKQIDEA--------LQRPGR 616 (979)
Q Consensus 545 ~~~aP~ILfIDEIDaL~~~r~~~~~~~~~~~~~iln~LL~~LDg~~~~~~ViVIATTN~pe~LDpA--------LlRpgR 616 (979)
+.+.|.||++||+. ....+..++..+. .+..+++||..++. ... |...+-
T Consensus 191 ~~~~P~villDE~~----------------~~e~~~~l~~~~~-----~G~~vI~ttH~~~~-~~~~~r~~~~~l~~~~~ 248 (270)
T TIGR02858 191 RSMSPDVIVVDEIG----------------REEDVEALLEALH-----AGVSIIATAHGRDV-EDLYKRPVFKELIENEA 248 (270)
T ss_pred HhCCCCEEEEeCCC----------------cHHHHHHHHHHHh-----CCCEEEEEechhHH-HHHHhChHHHHHHhcCc
Confidence 77899999999962 1122334444432 34567888876433 223 233456
Q ss_pred eeeEeccC
Q 035561 617 MDRIFNLQ 624 (979)
Q Consensus 617 Fd~~I~~~ 624 (979)
|++.+.+.
T Consensus 249 ~~r~i~L~ 256 (270)
T TIGR02858 249 FERYVVLS 256 (270)
T ss_pred eEEEEEEe
Confidence 77777664
No 278
>PRK08118 topology modulation protein; Reviewed
Probab=97.39 E-value=0.0003 Score=72.21 Aligned_cols=33 Identities=27% Similarity=0.643 Sum_probs=30.4
Q ss_pred eeEecCCCCCChHHHHHHHHHHcCCCEEEeech
Q 035561 490 GVLIVGERGTGKTSLALAIAAEARVPVVNVEAQ 522 (979)
Q Consensus 490 gVLL~GPPGTGKTtLArAlA~elg~~~i~Is~s 522 (979)
.|++.||||+||||+|+.|++.++.+++.++.-
T Consensus 3 rI~I~G~~GsGKSTlak~L~~~l~~~~~~lD~l 35 (167)
T PRK08118 3 KIILIGSGGSGKSTLARQLGEKLNIPVHHLDAL 35 (167)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCCceecchh
Confidence 489999999999999999999999999988753
No 279
>TIGR01618 phage_P_loop phage nucleotide-binding protein. This model represents an uncharacterized family of proteins from a number of phage of Gram-positive bacteria. This protein contains a P-loop motif, G/A-X-X-G-X-G-K-T near its amino end. The function of this protein is unknown.
Probab=97.39 E-value=0.00028 Score=75.77 Aligned_cols=74 Identities=19% Similarity=0.216 Sum_probs=42.6
Q ss_pred CCceeEecCCCCCChHHHHHHHHHHcCCCEEEeechh-hhhh-hh-------cccchhhHHHHHHHHHh--cCCeEEEEc
Q 035561 487 APRGVLIVGERGTGKTSLALAIAAEARVPVVNVEAQE-LEAG-LW-------VGQSASNVRELFQTARD--LAPVIIFVE 555 (979)
Q Consensus 487 ~P~gVLL~GPPGTGKTtLArAlA~elg~~~i~Is~sd-L~~~-~~-------vG~~~~~Ir~lF~~A~~--~aP~ILfID 555 (979)
.|..+|+||+||+||||+|+.++.. ..++..+++. ...+ .. ....-+.+.+.+..+.. ....+|+||
T Consensus 11 ~~~~~liyG~~G~GKtt~a~~~~~~--~~~~~~d~~~~~l~g~~~~~v~~~d~~~~~~~~~d~l~~~~~~~~~ydtVVID 88 (220)
T TIGR01618 11 IPNMYLIYGKPGTGKTSTIKYLPGK--TLVLSFDMSSKVLIGDENVDIADHDDMPPIQAMVEFYVMQNIQAVKYDNIVID 88 (220)
T ss_pred CCcEEEEECCCCCCHHHHHHhcCCC--CEEEeccccchhccCCCCCceeecCCCCCHHHHHHHHHHHHhccccCCEEEEe
Confidence 4677999999999999999999632 2334444321 0000 00 01111233333333322 346899999
Q ss_pred Ccccccc
Q 035561 556 DFDLFAG 562 (979)
Q Consensus 556 EIDaL~~ 562 (979)
.++.+..
T Consensus 89 sI~~l~~ 95 (220)
T TIGR01618 89 NISALQN 95 (220)
T ss_pred cHHHHHH
Confidence 9998754
No 280
>cd01121 Sms Sms (bacterial radA) DNA repair protein. This protein is not related to archael radA any more than is to other RecA-like NTPases. Sms has a role in recombination and recombinational repair and is responsible for the stabilization or processing of branched DNA molecules.
Probab=97.36 E-value=0.00081 Score=77.63 Aligned_cols=79 Identities=23% Similarity=0.395 Sum_probs=55.7
Q ss_pred CCCCCceeEecCCCCCChHHHHHHHHHHc---CCCEEEeechhhhhh-----hhcc--------cchhhHHHHHHHHHhc
Q 035561 484 GARAPRGVLIVGERGTGKTSLALAIAAEA---RVPVVNVEAQELEAG-----LWVG--------QSASNVRELFQTARDL 547 (979)
Q Consensus 484 G~~~P~gVLL~GPPGTGKTtLArAlA~el---g~~~i~Is~sdL~~~-----~~vG--------~~~~~Ir~lF~~A~~~ 547 (979)
|+.+..-++|+|+||+|||+++..+|... +.+++++++.+-... ...| ..+..+..+++.+...
T Consensus 78 Gi~~GslvLI~G~pG~GKStLllq~a~~~a~~g~~VlYvs~EEs~~qi~~Ra~rlg~~~~~l~l~~e~~le~I~~~i~~~ 157 (372)
T cd01121 78 GLVPGSVILIGGDPGIGKSTLLLQVAARLAKRGGKVLYVSGEESPEQIKLRADRLGISTENLYLLAETNLEDILASIEEL 157 (372)
T ss_pred CccCCeEEEEEeCCCCCHHHHHHHHHHHHHhcCCeEEEEECCcCHHHHHHHHHHcCCCcccEEEEccCcHHHHHHHHHhc
Confidence 45666778999999999999999998765 457888876432110 0011 1233456677777777
Q ss_pred CCeEEEEcCcccccc
Q 035561 548 APVIIFVEDFDLFAG 562 (979)
Q Consensus 548 aP~ILfIDEIDaL~~ 562 (979)
.|.+|+||+|..+..
T Consensus 158 ~~~lVVIDSIq~l~~ 172 (372)
T cd01121 158 KPDLVIIDSIQTVYS 172 (372)
T ss_pred CCcEEEEcchHHhhc
Confidence 899999999998854
No 281
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=97.36 E-value=0.001 Score=76.68 Aligned_cols=112 Identities=13% Similarity=0.257 Sum_probs=63.3
Q ss_pred CCCceeEecCCCCCChHHHHHHHHHHc----C-CCEEEeechhhhh------h---hhcc------cchhhHHHHHHHHH
Q 035561 486 RAPRGVLIVGERGTGKTSLALAIAAEA----R-VPVVNVEAQELEA------G---LWVG------QSASNVRELFQTAR 545 (979)
Q Consensus 486 ~~P~gVLL~GPPGTGKTtLArAlA~el----g-~~~i~Is~sdL~~------~---~~vG------~~~~~Ir~lF~~A~ 545 (979)
..+..++|+||+|+||||++..+|..+ | ..+..+.+..+-. . ...| .....+.......
T Consensus 135 ~~g~ii~lvGptGvGKTTtiakLA~~~~~~~G~~~V~lit~D~~R~ga~EqL~~~a~~~gv~~~~~~~~~~l~~~l~~l- 213 (374)
T PRK14722 135 ERGGVFALMGPTGVGKTTTTAKLAARCVMRFGASKVALLTTDSYRIGGHEQLRIFGKILGVPVHAVKDGGDLQLALAEL- 213 (374)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEecccccccHHHHHHHHHHHcCCceEecCCcccHHHHHHHh-
Confidence 445679999999999999999999864 3 2444444333200 0 0011 1112222222222
Q ss_pred hcCCeEEEEcCccccccccccccCCCchhhHHHHHHHHhhhcccc-cCCeEEEEecccchhhchhhhh
Q 035561 546 DLAPVIIFVEDFDLFAGVRGQFIHTKQQDHESFINQLLVELDGFE-KQDGVVLMATTRNIKQIDEALQ 612 (979)
Q Consensus 546 ~~aP~ILfIDEIDaL~~~r~~~~~~~~~~~~~iln~LL~~LDg~~-~~~~ViVIATTN~pe~LDpALl 612 (979)
....+|+||...... ....+...+..+.+.. ....++|+.+|+..+.+...+.
T Consensus 214 -~~~DlVLIDTaG~~~-------------~d~~l~e~La~L~~~~~~~~~lLVLsAts~~~~l~evi~ 267 (374)
T PRK14722 214 -RNKHMVLIDTIGMSQ-------------RDRTVSDQIAMLHGADTPVQRLLLLNATSHGDTLNEVVQ 267 (374)
T ss_pred -cCCCEEEEcCCCCCc-------------ccHHHHHHHHHHhccCCCCeEEEEecCccChHHHHHHHH
Confidence 345899999985221 1223444444554433 2356888888888888776554
No 282
>cd00983 recA RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange.
Probab=97.36 E-value=0.00069 Score=76.72 Aligned_cols=117 Identities=20% Similarity=0.159 Sum_probs=65.9
Q ss_pred CCCCCceeEecCCCCCChHHHHHHHHHHc---CCCEEEeechhhhhhhh---------------cccchhhHHHHHHHHH
Q 035561 484 GARAPRGVLIVGERGTGKTSLALAIAAEA---RVPVVNVEAQELEAGLW---------------VGQSASNVRELFQTAR 545 (979)
Q Consensus 484 G~~~P~gVLL~GPPGTGKTtLArAlA~el---g~~~i~Is~sdL~~~~~---------------vG~~~~~Ir~lF~~A~ 545 (979)
|++..+-++++||||||||+||-.++.++ +..+++++...-....+ +...+..+..+-..++
T Consensus 51 Glp~G~iteI~Gp~GsGKTtLal~~~~~~~~~g~~~vyId~E~~~~~~~a~~lGvd~~~l~v~~p~~~eq~l~i~~~li~ 130 (325)
T cd00983 51 GYPKGRIIEIYGPESSGKTTLALHAIAEAQKLGGTVAFIDAEHALDPVYAKKLGVDLDNLLISQPDTGEQALEIADSLVR 130 (325)
T ss_pred CccCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCCEEEECccccHHHHHHHHcCCCHHHheecCCCCHHHHHHHHHHHHh
Confidence 45555668899999999999999887654 67788887643211110 1112222222323345
Q ss_pred hcCCeEEEEcCccccccccccc-cCCCc--hhhHHHHHHHHhhhcccccCCeEEEEec
Q 035561 546 DLAPVIIFVEDFDLFAGVRGQF-IHTKQ--QDHESFINQLLVELDGFEKQDGVVLMAT 600 (979)
Q Consensus 546 ~~aP~ILfIDEIDaL~~~r~~~-~~~~~--~~~~~iln~LL~~LDg~~~~~~ViVIAT 600 (979)
...+.+|+||-+-++.+...-. ..+.. ....+.+.+.+..|...-...++.+|.|
T Consensus 131 s~~~~lIVIDSvaal~~~~E~~~~~~~~~~~~qaR~l~~~Lr~L~~~~~k~~~~vI~t 188 (325)
T cd00983 131 SGAVDLIVVDSVAALVPKAEIEGEMGDSHVGLQARLMSQALRKLTGSINKSNTTVIFI 188 (325)
T ss_pred ccCCCEEEEcchHhhcccccccccccccchHHHHHHHHHHHHHHHHHHHhCCCEEEEE
Confidence 5678999999999987632110 00111 1122445555555544434445555555
No 283
>COG1485 Predicted ATPase [General function prediction only]
Probab=97.36 E-value=0.00061 Score=76.97 Aligned_cols=106 Identities=20% Similarity=0.267 Sum_probs=61.6
Q ss_pred CCCCceeEecCCCCCChHHHHHHHHHHcCCCE-EEeechhhhhhh------hcccchhhHHHHHHHHHhcCCeEEEEcCc
Q 035561 485 ARAPRGVLIVGERGTGKTSLALAIAAEARVPV-VNVEAQELEAGL------WVGQSASNVRELFQTARDLAPVIIFVEDF 557 (979)
Q Consensus 485 ~~~P~gVLL~GPPGTGKTtLArAlA~elg~~~-i~Is~sdL~~~~------~vG~~~~~Ir~lF~~A~~~aP~ILfIDEI 557 (979)
..+|+|+.|||+-|+|||.|.-.....+..+- ..+....++... ..|++ .-+..+-+... ..-.||+|||+
T Consensus 62 ~~~~~GlYl~GgVGrGKT~LMD~Fy~~lp~~~k~R~HFh~FM~~vH~~l~~l~g~~-dpl~~iA~~~~-~~~~vLCfDEF 139 (367)
T COG1485 62 HGPVRGLYLWGGVGRGKTMLMDLFYESLPGERKRRLHFHRFMARVHQRLHTLQGQT-DPLPPIADELA-AETRVLCFDEF 139 (367)
T ss_pred CCCCceEEEECCCCccHHHHHHHHHhhCCccccccccHHHHHHHHHHHHHHHcCCC-CccHHHHHHHH-hcCCEEEeeee
Confidence 34679999999999999999999998885433 223322332110 12222 11111111111 12369999998
Q ss_pred cccccccccccCCCchhhHHHHHHHHhhhcccccCCeEEEEecccc-hhhc
Q 035561 558 DLFAGVRGQFIHTKQQDHESFINQLLVELDGFEKQDGVVLMATTRN-IKQI 607 (979)
Q Consensus 558 DaL~~~r~~~~~~~~~~~~~iln~LL~~LDg~~~~~~ViVIATTN~-pe~L 607 (979)
.-= +-...-++..|+..|= ..+|+++||+|. |+.|
T Consensus 140 ~Vt-----------DI~DAMiL~rL~~~Lf----~~GV~lvaTSN~~P~~L 175 (367)
T COG1485 140 EVT-----------DIADAMILGRLLEALF----ARGVVLVATSNTAPDNL 175 (367)
T ss_pred eec-----------ChHHHHHHHHHHHHHH----HCCcEEEEeCCCChHHh
Confidence 621 1112345556665542 358999999998 5555
No 284
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=97.35 E-value=0.0022 Score=65.60 Aligned_cols=26 Identities=38% Similarity=0.597 Sum_probs=23.1
Q ss_pred CCceeEecCCCCCChHHHHHHHHHHc
Q 035561 487 APRGVLIVGERGTGKTSLALAIAAEA 512 (979)
Q Consensus 487 ~P~gVLL~GPPGTGKTtLArAlA~el 512 (979)
.+..+.++|+||+||||++..+|..+
T Consensus 4 ~~mki~ITG~PGvGKtTl~~ki~e~L 29 (179)
T COG1618 4 MAMKIFITGRPGVGKTTLVLKIAEKL 29 (179)
T ss_pred cceEEEEeCCCCccHHHHHHHHHHHH
Confidence 44569999999999999999999877
No 285
>cd01394 radB RadB. The archaeal protein radB shares similarity radA, the archaeal functional homologue to the bacterial RecA. The precise function of radB is unclear.
Probab=97.34 E-value=0.00057 Score=72.34 Aligned_cols=39 Identities=28% Similarity=0.458 Sum_probs=31.7
Q ss_pred CCCCCceeEecCCCCCChHHHHHHHHHHc---CCCEEEeech
Q 035561 484 GARAPRGVLIVGERGTGKTSLALAIAAEA---RVPVVNVEAQ 522 (979)
Q Consensus 484 G~~~P~gVLL~GPPGTGKTtLArAlA~el---g~~~i~Is~s 522 (979)
|++...-++++|+||||||+++..+|.+. +.++++++..
T Consensus 15 Gi~~g~i~~i~G~~GsGKT~l~~~~a~~~~~~g~~v~yi~~e 56 (218)
T cd01394 15 GVERGTVTQVYGPPGTGKTNIAIQLAVETAGQGKKVAYIDTE 56 (218)
T ss_pred CccCCeEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEECC
Confidence 55666669999999999999999999765 5677777654
No 286
>PHA02624 large T antigen; Provisional
Probab=97.34 E-value=6.1e-05 Score=90.29 Aligned_cols=123 Identities=19% Similarity=0.172 Sum_probs=71.6
Q ss_pred CCCCCceeEecCCCCCChHHHHHHHHHHcCCCEEEeechhhhhhhhcccchhhHHHHHHHHHhcCCeEEEEcCccccccc
Q 035561 484 GARAPRGVLIVGERGTGKTSLALAIAAEARVPVVNVEAQELEAGLWVGQSASNVRELFQTARDLAPVIIFVEDFDLFAGV 563 (979)
Q Consensus 484 G~~~P~gVLL~GPPGTGKTtLArAlA~elg~~~i~Is~sdL~~~~~vG~~~~~Ir~lF~~A~~~aP~ILfIDEIDaL~~~ 563 (979)
|++..+.++|+||||||||+++.++++.++-..++++++.-- . . |...-...-.+.+||++-.-+..
T Consensus 427 giPKk~~il~~GPpnTGKTtf~~sLl~~L~G~vlsVNsPt~k-s----------~--FwL~pl~D~~~~l~dD~t~~~~~ 493 (647)
T PHA02624 427 NVPKRRYWLFKGPVNSGKTTLAAALLDLCGGKSLNVNCPPDK-L----------N--FELGCAIDQFMVVFEDVKGQPAD 493 (647)
T ss_pred cCCCCeEEEEECCCCCCHHHHHHHHHHHcCCeEEEeeCCcch-h----------H--HHhhhhhhceEEEeeeccccccc
Confidence 556667999999999999999999999996667778754411 0 1 22221122357788887533221
Q ss_pred cccccCCCchhhHHHHHHHHhhhccc-----c---cC----CeEEEEecccchhhchhhhhcCCceeeEeccCC
Q 035561 564 RGQFIHTKQQDHESFINQLLVELDGF-----E---KQ----DGVVLMATTRNIKQIDEALQRPGRMDRIFNLQK 625 (979)
Q Consensus 564 r~~~~~~~~~~~~~iln~LL~~LDg~-----~---~~----~~ViVIATTN~pe~LDpALlRpgRFd~~I~~~~ 625 (979)
......+ .... -+..|-..|||. + .+ .--..|.|||. ..||..+.- ||...+.|..
T Consensus 494 ~~~Lp~G--~~~d-Nl~~lRn~LDG~V~v~ld~KH~n~~q~~~PPlliT~Ne-y~iP~T~~~--Rf~~~~~F~~ 561 (647)
T PHA02624 494 NKDLPSG--QGMN-NLDNLRDYLDGSVPVNLEKKHLNKRSQIFPPGIVTMNE-YLIPQTVKA--RFAKVLDFKP 561 (647)
T ss_pred cccCCcc--cccc-hhhHHHhhcCCCCccccchhccCchhccCCCeEEeecC-cccchhHHH--HHHHhccccc
Confidence 1100000 0010 112333455664 0 00 01245567775 678888887 9988888853
No 287
>PRK08533 flagellar accessory protein FlaH; Reviewed
Probab=97.32 E-value=0.00089 Score=72.26 Aligned_cols=78 Identities=23% Similarity=0.297 Sum_probs=47.9
Q ss_pred CCCCCceeEecCCCCCChHHHHHHHHHHc---CCCEEEeechh----hhhhh-hcc------------------------
Q 035561 484 GARAPRGVLIVGERGTGKTSLALAIAAEA---RVPVVNVEAQE----LEAGL-WVG------------------------ 531 (979)
Q Consensus 484 G~~~P~gVLL~GPPGTGKTtLArAlA~el---g~~~i~Is~sd----L~~~~-~vG------------------------ 531 (979)
|++...-++++||||||||+++..++... |.+.++++..+ +.... -.|
T Consensus 20 gi~~g~~~~i~G~~G~GKTtl~~~~~~~~~~~g~~~~yi~~e~~~~~~~~~~~~~g~~~~~~~~~~~l~~~~~~~~~~~~ 99 (230)
T PRK08533 20 GIPAGSLILIEGDESTGKSILSQRLAYGFLQNGYSVSYVSTQLTTTEFIKQMMSLGYDINKKLISGKLLYIPVYPLLSGN 99 (230)
T ss_pred CCCCCcEEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHHhCCchHHHhhcCcEEEEEecccccCh
Confidence 45666779999999999999976554433 56777776532 11000 000
Q ss_pred -cchhhHHHHHHHHHhcCCeEEEEcCccccc
Q 035561 532 -QSASNVRELFQTARDLAPVIIFVEDFDLFA 561 (979)
Q Consensus 532 -~~~~~Ir~lF~~A~~~aP~ILfIDEIDaL~ 561 (979)
.....+..+...+....|.+++|||+-.+.
T Consensus 100 ~~~~~~l~~il~~~~~~~~~~lVIDe~t~~l 130 (230)
T PRK08533 100 SEKRKFLKKLMNTRRFYEKDVIIIDSLSSLI 130 (230)
T ss_pred HHHHHHHHHHHHHHHhcCCCEEEEECccHHh
Confidence 012233444455555578999999998764
No 288
>PRK13949 shikimate kinase; Provisional
Probab=97.32 E-value=0.00082 Score=69.14 Aligned_cols=31 Identities=32% Similarity=0.607 Sum_probs=29.0
Q ss_pred eeEecCCCCCChHHHHHHHHHHcCCCEEEee
Q 035561 490 GVLIVGERGTGKTSLALAIAAEARVPVVNVE 520 (979)
Q Consensus 490 gVLL~GPPGTGKTtLArAlA~elg~~~i~Is 520 (979)
.|+|.|+||+||||+++.+|+.++.+++..+
T Consensus 3 ~I~liG~~GsGKstl~~~La~~l~~~~id~D 33 (169)
T PRK13949 3 RIFLVGYMGAGKTTLGKALARELGLSFIDLD 33 (169)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcCCCeeccc
Confidence 5999999999999999999999999988766
No 289
>PRK06067 flagellar accessory protein FlaH; Validated
Probab=97.32 E-value=0.00089 Score=71.86 Aligned_cols=39 Identities=31% Similarity=0.428 Sum_probs=32.1
Q ss_pred CCCCCceeEecCCCCCChHHHHHHHHHHc---CCCEEEeech
Q 035561 484 GARAPRGVLIVGERGTGKTSLALAIAAEA---RVPVVNVEAQ 522 (979)
Q Consensus 484 G~~~P~gVLL~GPPGTGKTtLArAlA~el---g~~~i~Is~s 522 (979)
|++.+..++++|+||||||+++..++.+. |.++++++..
T Consensus 21 G~~~g~~~~i~G~~GsGKt~l~~~~~~~~~~~g~~~~y~~~e 62 (234)
T PRK06067 21 GIPFPSLILIEGDHGTGKSVLSQQFVYGALKQGKKVYVITTE 62 (234)
T ss_pred CCcCCcEEEEECCCCCChHHHHHHHHHHHHhCCCEEEEEEcC
Confidence 67777889999999999999999997653 6777777653
No 290
>COG1241 MCM2 Predicted ATPase involved in replication control, Cdc46/Mcm family [DNA replication, recombination, and repair]
Probab=97.31 E-value=0.00024 Score=86.80 Aligned_cols=167 Identities=19% Similarity=0.235 Sum_probs=98.6
Q ss_pred CCcccCcHHHHHHHHHHHHhhcChhHHHhcC--CCCCceeEecCCCCCChHHHHHHHHHHcCCCEEEeechhhhhhhhcc
Q 035561 454 LKDFASVESMREEINEVVAFLQNPSAFQEMG--ARAPRGVLIVGERGTGKTSLALAIAAEARVPVVNVEAQELEAGLWVG 531 (979)
Q Consensus 454 f~DIvGleevke~L~eiV~~L~~p~~f~~lG--~~~P~gVLL~GPPGTGKTtLArAlA~elg~~~i~Is~sdL~~~~~vG 531 (979)
...|-|.+++|+.+.-. .+.-..+...-| ++---+|||.|-||||||.|.+.+++-+...++. ++.. +.-+|
T Consensus 285 aPsIyG~e~VKkAilLq--LfgGv~k~~~~g~~iRGDInILLvGDPgtaKSqlLk~v~~~aPr~vyt-sgkg---ss~~G 358 (682)
T COG1241 285 APSIYGHEDVKKAILLQ--LFGGVKKNLPDGTRIRGDIHILLVGDPGTAKSQLLKYVAKLAPRGVYT-SGKG---SSAAG 358 (682)
T ss_pred cccccCcHHHHHHHHHH--hcCCCcccCCCCcccccceeEEEcCCCchhHHHHHHHHHhhCCceEEE-cccc---ccccC
Confidence 45688999999987521 121111111111 2223589999999999999999999988665443 2211 11244
Q ss_pred cchhhHHHHH-----HHHHh---cCCeEEEEcCccccccccccccCCCchhhHHHHHHHHhhhcc----cc-------cC
Q 035561 532 QSASNVRELF-----QTARD---LAPVIIFVEDFDLFAGVRGQFIHTKQQDHESFINQLLVELDG----FE-------KQ 592 (979)
Q Consensus 532 ~~~~~Ir~lF-----~~A~~---~aP~ILfIDEIDaL~~~r~~~~~~~~~~~~~iln~LL~~LDg----~~-------~~ 592 (979)
-++..+++-+ -+|.. ..++|.+|||+|.+-. ... +.+...|+. .. -+
T Consensus 359 LTAav~rd~~tge~~LeaGALVlAD~Gv~cIDEfdKm~~----------~dr----~aihEaMEQQtIsIaKAGI~atLn 424 (682)
T COG1241 359 LTAAVVRDKVTGEWVLEAGALVLADGGVCCIDEFDKMNE----------EDR----VAIHEAMEQQTISIAKAGITATLN 424 (682)
T ss_pred ceeEEEEccCCCeEEEeCCEEEEecCCEEEEEeccCCCh----------HHH----HHHHHHHHhcEeeecccceeeecc
Confidence 4444444433 12211 2478999999997621 111 223333332 11 12
Q ss_pred CeEEEEecccchh-------------hchhhhhcCCceeeEecc-CCCCHHHHHHHHHHHHHhc
Q 035561 593 DGVVLMATTRNIK-------------QIDEALQRPGRMDRIFNL-QKPTQSEREKILRIAAQET 642 (979)
Q Consensus 593 ~~ViVIATTN~pe-------------~LDpALlRpgRFd~~I~~-~~Pd~eeR~~IL~~~l~~~ 642 (979)
...-|+||+|... .||++|++ |||..+.+ +.|+.+.=..|.++.+..+
T Consensus 425 ARcsvLAAaNP~~Gryd~~~~~~enI~l~~~lLS--RFDLifvl~D~~d~~~D~~ia~hil~~h 486 (682)
T COG1241 425 ARCSVLAAANPKFGRYDPKKTVAENINLPAPLLS--RFDLIFVLKDDPDEEKDEEIAEHILDKH 486 (682)
T ss_pred hhhhhhhhhCCCCCcCCCCCCHHHhcCCChhHHh--hCCeeEEecCCCCccchHHHHHHHHHHH
Confidence 3456889998843 47899999 99987554 5677776666666666543
No 291
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=97.28 E-value=0.0065 Score=70.59 Aligned_cols=169 Identities=12% Similarity=0.136 Sum_probs=89.9
Q ss_pred CCCceeEecCCCCCChHHHHHHHHHHc-------C--CCEEEeechhhhh----hh---------hcccchhhHHHHHHH
Q 035561 486 RAPRGVLIVGERGTGKTSLALAIAAEA-------R--VPVVNVEAQELEA----GL---------WVGQSASNVRELFQT 543 (979)
Q Consensus 486 ~~P~gVLL~GPPGTGKTtLArAlA~el-------g--~~~i~Is~sdL~~----~~---------~vG~~~~~Ir~lF~~ 543 (979)
..|..++|+||+|+||||.+..+|..+ + +.++.+++...-+ .. ........+...+..
T Consensus 172 ~~~~vi~lvGptGvGKTTT~aKLA~~~~~~~~~~g~~V~lit~Dt~R~aa~eQL~~~a~~lgvpv~~~~~~~~l~~~L~~ 251 (388)
T PRK12723 172 LKKRVFILVGPTGVGKTTTIAKLAAIYGINSDDKSLNIKIITIDNYRIGAKKQIQTYGDIMGIPVKAIESFKDLKEEITQ 251 (388)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHhhhccCCCeEEEEeccCccHHHHHHHHHHhhcCCcceEeeCcHHHHHHHHHH
Confidence 346789999999999999999998765 2 3344455421100 00 111222333333333
Q ss_pred HHhcCCeEEEEcCccccccccccccCCCchhhHHHHHHHHhhhccccc-CCeEEEEecccchhhchhhhhcCCcee-eEe
Q 035561 544 ARDLAPVIIFVEDFDLFAGVRGQFIHTKQQDHESFINQLLVELDGFEK-QDGVVLMATTRNIKQIDEALQRPGRMD-RIF 621 (979)
Q Consensus 544 A~~~aP~ILfIDEIDaL~~~r~~~~~~~~~~~~~iln~LL~~LDg~~~-~~~ViVIATTN~pe~LDpALlRpgRFd-~~I 621 (979)
. ....+|+||.+.... . ....+..+...++.... ...++|+.+|.....+...+.+-..+. ..+
T Consensus 252 ~--~~~DlVLIDTaGr~~-----------~-~~~~l~el~~~l~~~~~~~e~~LVlsat~~~~~~~~~~~~~~~~~~~~~ 317 (388)
T PRK12723 252 S--KDFDLVLVDTIGKSP-----------K-DFMKLAEMKELLNACGRDAEFHLAVSSTTKTSDVKEIFHQFSPFSYKTV 317 (388)
T ss_pred h--CCCCEEEEcCCCCCc-----------c-CHHHHHHHHHHHHhcCCCCeEEEEEcCCCCHHHHHHHHHHhcCCCCCEE
Confidence 3 345799999986441 1 11124455444554432 357888888888888876554321111 245
Q ss_pred ccCCCCHHHHHHHH-HHHHHhccc-------h---hhhhhhhHHHHHHHcCCCCHHHH
Q 035561 622 NLQKPTQSEREKIL-RIAAQETMD-------E---ELIDLVDWRKVAEKTALLRPIEL 668 (979)
Q Consensus 622 ~~~~Pd~eeR~~IL-~~~l~~~~~-------~---~l~~dvdL~~LA~~T~GfsgaDL 668 (979)
-+...|...+...+ ........+ . ......+-..+++..-||+-++=
T Consensus 318 I~TKlDet~~~G~~l~~~~~~~~Pi~yit~Gq~vPeDl~~~~~~~~~~~l~g~~~~~~ 375 (388)
T PRK12723 318 IFTKLDETTCVGNLISLIYEMRKEVSYVTDGQIVPHNISIAEPLTFIKKINGYRISDD 375 (388)
T ss_pred EEEeccCCCcchHHHHHHHHHCCCEEEEeCCCCChhhhhhCCHHHHHHHhcCCCccch
Confidence 56667776665433 333322111 0 11222345556666666665443
No 292
>TIGR01359 UMP_CMP_kin_fam UMP-CMP kinase family. This subfamily of the adenylate kinase superfamily contains examples of UMP-CMP kinase, as well as others proteins with unknown specificity, some currently designated adenylate kinase. All known members are eukaryotic.
Probab=97.26 E-value=0.0019 Score=66.29 Aligned_cols=33 Identities=24% Similarity=0.417 Sum_probs=27.7
Q ss_pred eEecCCCCCChHHHHHHHHHHcCCCEEEeechhhh
Q 035561 491 VLIVGERGTGKTSLALAIAAEARVPVVNVEAQELE 525 (979)
Q Consensus 491 VLL~GPPGTGKTtLArAlA~elg~~~i~Is~sdL~ 525 (979)
|+++|||||||||+|+.+|..+|.+ .++.++++
T Consensus 2 i~i~G~pGsGKst~a~~la~~~~~~--~is~~d~l 34 (183)
T TIGR01359 2 VFVLGGPGSGKGTQCAKIVENFGFT--HLSAGDLL 34 (183)
T ss_pred EEEECCCCCCHHHHHHHHHHHcCCe--EEECChHH
Confidence 7899999999999999999999865 45555554
No 293
>PF14516 AAA_35: AAA-like domain
Probab=97.25 E-value=0.0062 Score=69.30 Aligned_cols=170 Identities=18% Similarity=0.201 Sum_probs=97.3
Q ss_pred CceeEecCCCCCChHHHHHHHHHHc---CCCEEEeechhhhhhh------hc-----------c-------------cch
Q 035561 488 PRGVLIVGERGTGKTSLALAIAAEA---RVPVVNVEAQELEAGL------WV-----------G-------------QSA 534 (979)
Q Consensus 488 P~gVLL~GPPGTGKTtLArAlA~el---g~~~i~Is~sdL~~~~------~v-----------G-------------~~~ 534 (979)
+.-+.+.||..+|||++...+.+.+ |...+++++..+-... |. + ...
T Consensus 31 G~~~~I~apRq~GKTSll~~l~~~l~~~~~~~v~id~~~~~~~~~~~~~~f~~~~~~~i~~~L~l~~~l~~~w~~~~~~~ 110 (331)
T PF14516_consen 31 GSYIRIKAPRQMGKTSLLLRLLERLQQQGYRCVYIDLQQLGSAIFSDLEQFLRWFCEEISRQLKLDEKLDEYWDEEIGSK 110 (331)
T ss_pred CCEEEEECcccCCHHHHHHHHHHHHHHCCCEEEEEEeecCCCcccCCHHHHHHHHHHHHHHHcCCChhHHHHHHHhcCCh
Confidence 4568999999999999999887765 7788888887642111 00 0 011
Q ss_pred hhHHHHHHHH---HhcCCeEEEEcCccccccccccccCCCchhhHHHHHHHHhhhccc---cc----CCe-EEEEecccc
Q 035561 535 SNVRELFQTA---RDLAPVIIFVEDFDLFAGVRGQFIHTKQQDHESFINQLLVELDGF---EK----QDG-VVLMATTRN 603 (979)
Q Consensus 535 ~~Ir~lF~~A---~~~aP~ILfIDEIDaL~~~r~~~~~~~~~~~~~iln~LL~~LDg~---~~----~~~-ViVIATTN~ 603 (979)
......|+.. ....|-||+|||+|.+.... ...+.++..+... .. ... +++++.+..
T Consensus 111 ~~~~~~~~~~ll~~~~~~lVL~iDEiD~l~~~~------------~~~~dF~~~LR~~~~~~~~~~~~~~L~li~~~~t~ 178 (331)
T PF14516_consen 111 ISCTEYFEEYLLKQIDKPLVLFIDEIDRLFEYP------------QIADDFFGLLRSWYEQRKNNPIWQKLRLILAGSTE 178 (331)
T ss_pred hhHHHHHHHHHHhcCCCCEEEEEechhhhccCc------------chHHHHHHHHHHHHHhcccCcccceEEEEEecCcc
Confidence 1223334332 12468999999999986311 1122233332221 01 112 333333333
Q ss_pred hhhchhhhhcCCceeeEeccCCCCHHHHHHHHHHHHHhccchhhhhhhhHHHHHHHcCCCCHHHHHHHHHHHh
Q 035561 604 IKQIDEALQRPGRMDRIFNLQKPTQSEREKILRIAAQETMDEELIDLVDWRKVAEKTALLRPIELKLVPVALE 676 (979)
Q Consensus 604 pe~LDpALlRpgRFd~~I~~~~Pd~eeR~~IL~~~l~~~~~~~l~~dvdL~~LA~~T~GfsgaDL~~Lv~aa~ 676 (979)
+......=.+|--+...|.++..+.++...+++.+-... ....++.|-..|.| -|.=+..+|..+.
T Consensus 179 ~~~~~~~~~SPFNIg~~i~L~~Ft~~ev~~L~~~~~~~~------~~~~~~~l~~~tgG-hP~Lv~~~~~~l~ 244 (331)
T PF14516_consen 179 DYIILDINQSPFNIGQPIELPDFTPEEVQELAQRYGLEF------SQEQLEQLMDWTGG-HPYLVQKACYLLV 244 (331)
T ss_pred cccccCCCCCCcccccceeCCCCCHHHHHHHHHhhhccC------CHHHHHHHHHHHCC-CHHHHHHHHHHHH
Confidence 222211224554555678899999999999888774321 12238888899999 4544555555443
No 294
>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B ....
Probab=97.21 E-value=0.0007 Score=66.19 Aligned_cols=33 Identities=27% Similarity=0.542 Sum_probs=27.1
Q ss_pred eEecCCCCCChHHHHHHHHHHcCCCEEEeechhhh
Q 035561 491 VLIVGERGTGKTSLALAIAAEARVPVVNVEAQELE 525 (979)
Q Consensus 491 VLL~GPPGTGKTtLArAlA~elg~~~i~Is~sdL~ 525 (979)
|+++|||||||||+|+.+++.++ ...++..++.
T Consensus 2 ii~~G~pgsGKSt~a~~l~~~~~--~~~i~~D~~~ 34 (143)
T PF13671_consen 2 IILCGPPGSGKSTLAKRLAKRLG--AVVISQDEIR 34 (143)
T ss_dssp EEEEESTTSSHHHHHHHHHHHST--EEEEEHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHCC--CEEEeHHHHH
Confidence 78999999999999999999999 4445555543
No 295
>PRK09376 rho transcription termination factor Rho; Provisional
Probab=97.20 E-value=0.0011 Score=76.44 Aligned_cols=74 Identities=22% Similarity=0.242 Sum_probs=45.9
Q ss_pred eeEecCCCCCChHHHHHHHHHHcCC-----CEEEeechhh---------------hhhhhcccchhhHH---HHHHHHHh
Q 035561 490 GVLIVGERGTGKTSLALAIAAEARV-----PVVNVEAQEL---------------EAGLWVGQSASNVR---ELFQTARD 546 (979)
Q Consensus 490 gVLL~GPPGTGKTtLArAlA~elg~-----~~i~Is~sdL---------------~~~~~vG~~~~~Ir---~lF~~A~~ 546 (979)
-.||.||||||||+|++.|++.... .++.+-..+. +.+.+......+++ .+++.|+.
T Consensus 171 R~lIvgppGvGKTTLaK~Ian~I~~nhFDv~~~VvLIgER~~EVtdiqrsIlg~vv~st~d~~~~~~~~~a~~~ie~Ae~ 250 (416)
T PRK09376 171 RGLIVAPPKAGKTVLLQNIANSITTNHPEVHLIVLLIDERPEEVTDMQRSVKGEVVASTFDEPAERHVQVAEMVIEKAKR 250 (416)
T ss_pred eEEEeCCCCCChhHHHHHHHHHHHhhcCCeEEEEEEeCCchhHHHHHHHHhcCcEEEECCCCCHHHHHHHHHHHHHHHHH
Confidence 3899999999999999999987643 2222222111 11223333344444 33444432
Q ss_pred ----cCCeEEEEcCccccccc
Q 035561 547 ----LAPVIIFVEDFDLFAGV 563 (979)
Q Consensus 547 ----~aP~ILfIDEIDaL~~~ 563 (979)
....+||||||+.++..
T Consensus 251 ~~e~G~dVlL~iDsItR~arA 271 (416)
T PRK09376 251 LVEHGKDVVILLDSITRLARA 271 (416)
T ss_pred HHHcCCCEEEEEEChHHHHHH
Confidence 35789999999988753
No 296
>cd01393 recA_like RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange. While prokaryotes have a single RecA protein, eukaryotes have multiple RecA homologs such as Rad51, DMC1 and Rad55/57. Archaea have the RecA-like homologs radA and radB.
Probab=97.19 E-value=0.001 Score=70.55 Aligned_cols=117 Identities=21% Similarity=0.193 Sum_probs=66.2
Q ss_pred CCCCCceeEecCCCCCChHHHHHHHHHHc---C------CCEEEeechhhhhh-hhc------c---------------c
Q 035561 484 GARAPRGVLIVGERGTGKTSLALAIAAEA---R------VPVVNVEAQELEAG-LWV------G---------------Q 532 (979)
Q Consensus 484 G~~~P~gVLL~GPPGTGKTtLArAlA~el---g------~~~i~Is~sdL~~~-~~v------G---------------~ 532 (979)
|++...-+.|+||||||||+++..+|... + ..+++++..+-... ... + .
T Consensus 15 G~~~g~v~~I~G~~GsGKT~l~~~ia~~~~~~~~~~g~~~~v~yi~~e~~~~~~rl~~~~~~~~~~~~~~~~~i~~~~~~ 94 (226)
T cd01393 15 GIPTGRITEIFGEFGSGKTQLCLQLAVEAQLPGELGGLEGKVVYIDTEGAFRPERLVQLAVRFGLDPEEVLDNIYVARPY 94 (226)
T ss_pred CCcCCcEEEEeCCCCCChhHHHHHHHHHhhcccccCCCcceEEEEecCCCCCHHHHHHHHHHhccchhhhhccEEEEeCC
Confidence 56666778999999999999999998764 3 56677776542101 100 0 0
Q ss_pred chhhHHHHHHHH----HhcCCeEEEEcCccccccccccccCCCchhhHHHHHHHHhhhcccccCCeEEEEecc
Q 035561 533 SASNVRELFQTA----RDLAPVIIFVEDFDLFAGVRGQFIHTKQQDHESFINQLLVELDGFEKQDGVVLMATT 601 (979)
Q Consensus 533 ~~~~Ir~lF~~A----~~~aP~ILfIDEIDaL~~~r~~~~~~~~~~~~~iln~LL~~LDg~~~~~~ViVIATT 601 (979)
....+...++.. ....+++|+||-+..+.+..... ........+.+.+++..|..+....++.|+.|+
T Consensus 95 ~~~~~~~~l~~~~~~~~~~~~~lvVIDsis~l~~~~~~~-~~~~~~~~~~l~~~~~~L~~~a~~~~~~vi~tn 166 (226)
T cd01393 95 NGEQQLEIVEELERIMSSGRVDLVVVDSVAALFRKEFIG-RGMLAERARLLSQALRKLLRLADKFNVAVVFTN 166 (226)
T ss_pred CHHHHHHHHHHHHHHhhcCCeeEEEEcCcchhhhhhhcC-CchHHHHHHHHHHHHHHHHHHHHHhCcEEEEEE
Confidence 111222223322 23468899999999886432110 000122334556666666655444555666554
No 297
>cd03283 ABC_MutS-like MutS-like homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form slid
Probab=97.18 E-value=0.0016 Score=68.88 Aligned_cols=106 Identities=18% Similarity=0.361 Sum_probs=58.3
Q ss_pred CceeEecCCCCCChHHHHHHHHHH-----cCCCE-------------EEeechh-hhh--hhhcccchhhHHHHHHHHHh
Q 035561 488 PRGVLIVGERGTGKTSLALAIAAE-----ARVPV-------------VNVEAQE-LEA--GLWVGQSASNVRELFQTARD 546 (979)
Q Consensus 488 P~gVLL~GPPGTGKTtLArAlA~e-----lg~~~-------------i~Is~sd-L~~--~~~vG~~~~~Ir~lF~~A~~ 546 (979)
.+-++|+||+|+||||++|.++.. .|.++ ..++..+ +.. +.+. ....++..+++.+..
T Consensus 25 g~~~~ltGpNg~GKSTllr~i~~~~~l~~~G~~v~a~~~~~q~~~l~~~~~~~d~l~~~~s~~~-~e~~~~~~iL~~~~~ 103 (199)
T cd03283 25 KNGILITGSNMSGKSTFLRTIGVNVILAQAGAPVCASSFELPPVKIFTSIRVSDDLRDGISYFY-AELRRLKEIVEKAKK 103 (199)
T ss_pred CcEEEEECCCCCChHHHHHHHHHHHHHHHcCCEEecCccCcccceEEEeccchhccccccChHH-HHHHHHHHHHHhccC
Confidence 356899999999999999999863 34332 1111111 100 0111 112456667776665
Q ss_pred cCCeEEEEcCccccccccccccCCCchhhHHHHHHHHhhhcccccCCeEEEEecccchhhc
Q 035561 547 LAPVIIFVEDFDLFAGVRGQFIHTKQQDHESFINQLLVELDGFEKQDGVVLMATTRNIKQI 607 (979)
Q Consensus 547 ~aP~ILfIDEIDaL~~~r~~~~~~~~~~~~~iln~LL~~LDg~~~~~~ViVIATTN~pe~L 607 (979)
..|.++++||.-+= ............++..+.. .+..+|.+|..++.+
T Consensus 104 ~~p~llllDEp~~g---------lD~~~~~~l~~~ll~~l~~----~~~tiiivTH~~~~~ 151 (199)
T cd03283 104 GEPVLFLLDEIFKG---------TNSRERQAASAAVLKFLKN----KNTIGIISTHDLELA 151 (199)
T ss_pred CCCeEEEEecccCC---------CCHHHHHHHHHHHHHHHHH----CCCEEEEEcCcHHHH
Confidence 57999999997421 1111222333444544421 134566677776654
No 298
>PRK07261 topology modulation protein; Provisional
Probab=97.16 E-value=0.0007 Score=69.67 Aligned_cols=32 Identities=28% Similarity=0.595 Sum_probs=29.1
Q ss_pred eEecCCCCCChHHHHHHHHHHcCCCEEEeech
Q 035561 491 VLIVGERGTGKTSLALAIAAEARVPVVNVEAQ 522 (979)
Q Consensus 491 VLL~GPPGTGKTtLArAlA~elg~~~i~Is~s 522 (979)
|+++|+||+||||+|+.++..++.+.+..+.-
T Consensus 3 i~i~G~~GsGKSTla~~l~~~~~~~~i~~D~~ 34 (171)
T PRK07261 3 IAIIGYSGSGKSTLARKLSQHYNCPVLHLDTL 34 (171)
T ss_pred EEEEcCCCCCHHHHHHHHHHHhCCCeEecCCE
Confidence 88999999999999999999999998877653
No 299
>PF05272 VirE: Virulence-associated protein E; InterPro: IPR007936 This family contains several bacterial virulence-associated protein E like proteins.
Probab=97.16 E-value=0.0023 Score=67.81 Aligned_cols=111 Identities=17% Similarity=0.323 Sum_probs=62.5
Q ss_pred CCCCCceeEecCCCCCChHHHHHHHHHHcCCCEEEeechhhhhhhhcccchhhHHHHHHHHHhcCCeEEEEcCccccccc
Q 035561 484 GARAPRGVLIVGERGTGKTSLALAIAAEARVPVVNVEAQELEAGLWVGQSASNVRELFQTARDLAPVIIFVEDFDLFAGV 563 (979)
Q Consensus 484 G~~~P~gVLL~GPPGTGKTtLArAlA~elg~~~i~Is~sdL~~~~~vG~~~~~Ir~lF~~A~~~aP~ILfIDEIDaL~~~ 563 (979)
|......++|.|+.|+|||++.+.|+.+ ++ .+... .. . ...... ... ..-|+.+||++.+..
T Consensus 48 g~k~d~~lvl~G~QG~GKStf~~~L~~~----~~-~d~~~---~~--~-~kd~~~----~l~--~~~iveldEl~~~~k- 109 (198)
T PF05272_consen 48 GCKNDTVLVLVGKQGIGKSTFFRKLGPE----YF-SDSIN---DF--D-DKDFLE----QLQ--GKWIVELDELDGLSK- 109 (198)
T ss_pred CCcCceeeeEecCCcccHHHHHHHHhHH----hc-cCccc---cC--C-CcHHHH----HHH--HhHheeHHHHhhcch-
Confidence 5666677899999999999999999766 11 11111 00 0 011111 111 126899999998741
Q ss_pred cccccCCCchhhHHHHHHHHh-hhcccc---------cCCeEEEEecccchhhc-hhhhhcCCceeeEeccCC
Q 035561 564 RGQFIHTKQQDHESFINQLLV-ELDGFE---------KQDGVVLMATTRNIKQI-DEALQRPGRMDRIFNLQK 625 (979)
Q Consensus 564 r~~~~~~~~~~~~~iln~LL~-~LDg~~---------~~~~ViVIATTN~pe~L-DpALlRpgRFd~~I~~~~ 625 (979)
...+ .+..+++ ..+.+. -....++|||||..+-| |+.=-| || ..|++..
T Consensus 110 ---------~~~~-~lK~~iT~~~~~~R~pY~~~~~~~~R~~~figTtN~~~~L~D~TGnR--Rf-~~v~v~~ 169 (198)
T PF05272_consen 110 ---------KDVE-ALKSFITRRTDTYRPPYGRDPEEFPRRAVFIGTTNDDDFLKDPTGNR--RF-WPVEVSK 169 (198)
T ss_pred ---------hhHH-HHHHHhcccceeeecCCcCcceeeceeEEEEeccCCcceeeCCCCCe--EE-EEEEEcC
Confidence 1122 3333333 233321 12347889999998755 555556 77 3444443
No 300
>PF07693 KAP_NTPase: KAP family P-loop domain; InterPro: IPR011646 The KAP (after Kidins220/ARMS and PifA) family of predicted NTPases are sporadically distributed across a wide phylogenetic range in bacteria and in animals. Many of the prokaryotic KAP NTPases are encoded in plasmids and tend to undergo disruption to form pseudogenes. A unique feature of all eukaryotic and certain bacterial KAP NTPases is the presence of two or four transmembrane helices inserted into the P-loop NTPase domain. These transmembrane helices anchor KAP NTPases in the membrane such that the P-loop domain is located on the intracellular side [].
Probab=97.16 E-value=0.01 Score=66.22 Aligned_cols=29 Identities=28% Similarity=0.390 Sum_probs=25.4
Q ss_pred CCCceeEecCCCCCChHHHHHHHHHHcCC
Q 035561 486 RAPRGVLIVGERGTGKTSLALAIAAEARV 514 (979)
Q Consensus 486 ~~P~gVLL~GPPGTGKTtLArAlA~elg~ 514 (979)
..|..|-|+|+=|||||++.+.+-+++..
T Consensus 18 ~~~~~IgL~G~WGsGKSs~l~~l~~~L~~ 46 (325)
T PF07693_consen 18 DDPFVIGLYGEWGSGKSSFLNMLKEELKE 46 (325)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHhc
Confidence 56788999999999999999999887743
No 301
>PRK14974 cell division protein FtsY; Provisional
Probab=97.14 E-value=0.0038 Score=71.20 Aligned_cols=35 Identities=31% Similarity=0.369 Sum_probs=27.3
Q ss_pred CCceeEecCCCCCChHHHHHHHHHHc---CCCEEEeec
Q 035561 487 APRGVLIVGERGTGKTSLALAIAAEA---RVPVVNVEA 521 (979)
Q Consensus 487 ~P~gVLL~GPPGTGKTtLArAlA~el---g~~~i~Is~ 521 (979)
.|.-++|+||||+||||++..+|..+ +..+..+++
T Consensus 139 ~~~vi~~~G~~GvGKTTtiakLA~~l~~~g~~V~li~~ 176 (336)
T PRK14974 139 KPVVIVFVGVNGTGKTTTIAKLAYYLKKNGFSVVIAAG 176 (336)
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEEecC
Confidence 46789999999999999888888765 455555554
No 302
>cd01128 rho_factor Transcription termination factor rho is a bacterial ATP-dependent RNA/DNA helicase. It is a homohexamer. Each monomer consists of an N-terminal domain of the OB fold, which is responsible for binding to cysteine rich nucleotides. This alignment is of the C-terminal ATP binding domain.
Probab=97.13 E-value=0.0014 Score=71.82 Aligned_cols=27 Identities=33% Similarity=0.311 Sum_probs=23.8
Q ss_pred CceeEecCCCCCChHHHHHHHHHHcCC
Q 035561 488 PRGVLIVGERGTGKTSLALAIAAEARV 514 (979)
Q Consensus 488 P~gVLL~GPPGTGKTtLArAlA~elg~ 514 (979)
..-++|.||+|||||++++.+++....
T Consensus 16 Gqr~~I~G~~G~GKTTLlr~I~n~l~~ 42 (249)
T cd01128 16 GQRGLIVAPPKAGKTTLLQSIANAITK 42 (249)
T ss_pred CCEEEEECCCCCCHHHHHHHHHhcccc
Confidence 456999999999999999999998754
No 303
>PF03266 NTPase_1: NTPase; InterPro: IPR004948 This entry represents a family of nucleoside-triphosphatases which have activity towards ATP, GTP, CTP, TTP and UTP and may hydrolyse nucleoside diphosphates with lower efficiency []. It includes proteins from bacteria to human, and the function was determined first in a hyperthermophilic bacterium to be an NTPase []. The structure of one member-sequence represents a variation of the RecA fold, and implies that the function might be that of a DNA/RNA modifying enzyme []. The sequence carries both a Walker A and Walker B motif which together are characteristic of ATPases or GTPases. The protein exhibits an increased expression profile in human liver cholangiocarcinoma when compared to normal tissue [].; GO: 0005524 ATP binding, 0016740 transferase activity, 0019204 nucleotide phosphatase activity; PDB: 1YE8_A 2I3B_A.
Probab=97.12 E-value=0.00035 Score=72.04 Aligned_cols=23 Identities=35% Similarity=0.556 Sum_probs=20.6
Q ss_pred eeEecCCCCCChHHHHHHHHHHc
Q 035561 490 GVLIVGERGTGKTSLALAIAAEA 512 (979)
Q Consensus 490 gVLL~GPPGTGKTtLArAlA~el 512 (979)
+++|+|+||+||||+++.+++.+
T Consensus 1 ~i~iTG~pG~GKTTll~k~i~~l 23 (168)
T PF03266_consen 1 HIFITGPPGVGKTTLLKKVIEEL 23 (168)
T ss_dssp EEEEES-TTSSHHHHHHHHHHHH
T ss_pred CEEEECcCCCCHHHHHHHHHHHh
Confidence 48999999999999999999988
No 304
>PF01745 IPT: Isopentenyl transferase; InterPro: IPR002648 Isopentenyl transferase / dimethylallyl transferase synthesizes isopentenyladensosine 5'-monophosphate, a cytokinin that induces shoot formation on host plants infected with the Ti plasmid [].; GO: 0004161 dimethylallyltranstransferase activity, 0009058 biosynthetic process; PDB: 2ZE8_C 2ZE5_A 2ZE7_A 2ZE6_A.
Probab=97.12 E-value=0.0021 Score=68.53 Aligned_cols=134 Identities=22% Similarity=0.314 Sum_probs=66.1
Q ss_pred eEecCCCCCChHHHHHHHHHHcCCCEEEeechhhhhhhhcccchhhHHHHHHHHHhcCCeEEEEcCccccccccccccCC
Q 035561 491 VLIVGERGTGKTSLALAIAAEARVPVVNVEAQELEAGLWVGQSASNVRELFQTARDLAPVIIFVEDFDLFAGVRGQFIHT 570 (979)
Q Consensus 491 VLL~GPPGTGKTtLArAlA~elg~~~i~Is~sdL~~~~~vG~~~~~Ir~lF~~A~~~aP~ILfIDEIDaL~~~r~~~~~~ 570 (979)
++|+||+|||||.+|-++|+..|.|++..+.-.+..+.-+|.+..... +.+ ..+- ++|||-..- .
T Consensus 4 ~~i~GpT~tGKt~~ai~lA~~~g~pvI~~Driq~y~~l~v~Sgrp~~~----el~-~~~R-iyL~~r~l~---------~ 68 (233)
T PF01745_consen 4 YLIVGPTGTGKTALAIALAQKTGAPVISLDRIQCYPELSVGSGRPTPS----ELK-GTRR-IYLDDRPLS---------D 68 (233)
T ss_dssp EEEE-STTSSHHHHHHHHHHHH--EEEEE-SGGG-GGGTTTTT---SG----GGT-T-EE-EES----GG---------G
T ss_pred EEEECCCCCChhHHHHHHHHHhCCCEEEecceecccccccccCCCCHH----HHc-ccce-eeecccccc---------C
Confidence 689999999999999999999999999999877765544453321111 111 1123 777764311 1
Q ss_pred CchhhHHHHHHHHhhhcccccCCeEEEEecccchhhchhhhhc---CCcee-eEeccCCCCHHHHHHHHHHHHHh
Q 035561 571 KQQDHESFINQLLVELDGFEKQDGVVLMATTRNIKQIDEALQR---PGRMD-RIFNLQKPTQSEREKILRIAAQE 641 (979)
Q Consensus 571 ~~~~~~~iln~LL~~LDg~~~~~~ViVIATTN~pe~LDpALlR---pgRFd-~~I~~~~Pd~eeR~~IL~~~l~~ 641 (979)
+.-........|+..++.+....++++=+-+.+ .|..-..+ ...|. .+..++.||.+.-..-.+...++
T Consensus 69 G~i~a~ea~~~Li~~v~~~~~~~~~IlEGGSIS--Ll~~m~~~~~w~~~f~w~i~rl~l~d~~~f~~ra~~Rv~~ 141 (233)
T PF01745_consen 69 GIINAEEAHERLISEVNSYSAHGGLILEGGSIS--LLNCMAQDPYWSLDFRWHIRRLRLPDEEVFMARAKRRVRQ 141 (233)
T ss_dssp -S--HHHHHHHHHHHHHTTTTSSEEEEEE--HH--HHHHHHH-TTTSSSSEEEEEE-----HHHHHHHHHHHHHH
T ss_pred CCcCHHHHHHHHHHHHHhccccCceEEeCchHH--HHHHHHhcccccCCCeEEEEEEECCChHHHHHHHHHHHHH
Confidence 222345566677777787777555555555433 22222222 11333 34566778877665555554443
No 305
>PTZ00202 tuzin; Provisional
Probab=97.11 E-value=0.037 Score=65.00 Aligned_cols=63 Identities=29% Similarity=0.461 Sum_probs=49.8
Q ss_pred CCCCCcccCcHHHHHHHHHHHHhhcChhHHHhcCCCCCceeEecCCCCCChHHHHHHHHHHcCCCEEEeech
Q 035561 451 PIPLKDFASVESMREEINEVVAFLQNPSAFQEMGARAPRGVLIVGERGTGKTSLALAIAAEARVPVVNVEAQ 522 (979)
Q Consensus 451 ~~~f~DIvGleevke~L~eiV~~L~~p~~f~~lG~~~P~gVLL~GPPGTGKTtLArAlA~elg~~~i~Is~s 522 (979)
|....+++|-+.....|..++.. .....|+-+.|+||+|||||++++.++..++.+.+.+|..
T Consensus 258 Pa~~~~FVGReaEla~Lr~VL~~---------~d~~~privvLtG~~G~GKTTLlR~~~~~l~~~qL~vNpr 320 (550)
T PTZ00202 258 PAVIRQFVSREAEESWVRQVLRR---------LDTAHPRIVVFTGFRGCGKSSLCRSAVRKEGMPAVFVDVR 320 (550)
T ss_pred CCCccCCCCcHHHHHHHHHHHhc---------cCCCCceEEEEECCCCCCHHHHHHHHHhcCCceEEEECCC
Confidence 34567999999888888876643 2333456788999999999999999999999887777654
No 306
>KOG2170 consensus ATPase of the AAA+ superfamily [General function prediction only]
Probab=97.08 E-value=0.0065 Score=67.57 Aligned_cols=96 Identities=18% Similarity=0.194 Sum_probs=60.1
Q ss_pred cccCcHHHHHHHHHHHHh-hcChhHHHhcCCCCCceeEecCCCCCChHHHHHHHHHHcC-----CCEEEeec--hhhhh-
Q 035561 456 DFASVESMREEINEVVAF-LQNPSAFQEMGARAPRGVLIVGERGTGKTSLALAIAAEAR-----VPVVNVEA--QELEA- 526 (979)
Q Consensus 456 DIvGleevke~L~eiV~~-L~~p~~f~~lG~~~P~gVLL~GPPGTGKTtLArAlA~elg-----~~~i~Is~--sdL~~- 526 (979)
-+.|+.-+++.+-..+.- +.++ .-+.|-.+=|+|++||||+.+++.||+.+- .+++..-. -++-.
T Consensus 83 ~lfGQHla~~~Vv~alk~~~~n~------~p~KPLvLSfHG~tGTGKN~Va~iiA~n~~~~Gl~S~~V~~fvat~hFP~~ 156 (344)
T KOG2170|consen 83 ALFGQHLAKQLVVNALKSHWANP------NPRKPLVLSFHGWTGTGKNYVAEIIAENLYRGGLRSPFVHHFVATLHFPHA 156 (344)
T ss_pred HhhchHHHHHHHHHHHHHHhcCC------CCCCCeEEEecCCCCCchhHHHHHHHHHHHhccccchhHHHhhhhccCCCh
Confidence 367888887777655543 4444 235567777999999999999999999872 22221110 01110
Q ss_pred ---hhhcccchhhHHHHHHHHHhcCCeEEEEcCcccc
Q 035561 527 ---GLWVGQSASNVRELFQTARDLAPVIIFVEDFDLF 560 (979)
Q Consensus 527 ---~~~vG~~~~~Ir~lF~~A~~~aP~ILfIDEIDaL 560 (979)
+.|..+-...+ -+.+..++.+|+++||.|.+
T Consensus 157 ~~ie~Yk~eL~~~v---~~~v~~C~rslFIFDE~DKm 190 (344)
T KOG2170|consen 157 SKIEDYKEELKNRV---RGTVQACQRSLFIFDEVDKL 190 (344)
T ss_pred HHHHHHHHHHHHHH---HHHHHhcCCceEEechhhhc
Confidence 11222233333 34455677799999999988
No 307
>PRK13947 shikimate kinase; Provisional
Probab=97.05 E-value=0.00052 Score=69.60 Aligned_cols=31 Identities=23% Similarity=0.494 Sum_probs=28.7
Q ss_pred eeEecCCCCCChHHHHHHHHHHcCCCEEEee
Q 035561 490 GVLIVGERGTGKTSLALAIAAEARVPVVNVE 520 (979)
Q Consensus 490 gVLL~GPPGTGKTtLArAlA~elg~~~i~Is 520 (979)
+|+|.|+||||||++++.+|+.+|.+|+..+
T Consensus 3 ~I~l~G~~GsGKst~a~~La~~lg~~~id~d 33 (171)
T PRK13947 3 NIVLIGFMGTGKTTVGKRVATTLSFGFIDTD 33 (171)
T ss_pred eEEEEcCCCCCHHHHHHHHHHHhCCCEEECc
Confidence 5999999999999999999999999997655
No 308
>PRK15455 PrkA family serine protein kinase; Provisional
Probab=97.05 E-value=0.0012 Score=79.10 Aligned_cols=64 Identities=23% Similarity=0.333 Sum_probs=45.2
Q ss_pred CCCCcccCcHHHHHHHHHHHHhhcChhHHHhcCCCCCceeEecCCCCCChHHHHHHHHHHcC-CCEEEeec
Q 035561 452 IPLKDFASVESMREEINEVVAFLQNPSAFQEMGARAPRGVLIVGERGTGKTSLALAIAAEAR-VPVVNVEA 521 (979)
Q Consensus 452 ~~f~DIvGleevke~L~eiV~~L~~p~~f~~lG~~~P~gVLL~GPPGTGKTtLArAlA~elg-~~~i~Is~ 521 (979)
.-|+|+.|++++++.+-+.+.. . ...++. ..+-++|.||||+|||+||++||+.+. .|++.+.+
T Consensus 73 ~fF~d~yGlee~ieriv~~l~~---A--a~gl~~-~~~IL~LvGPpG~GKSsLa~~la~~le~~~~Y~~kg 137 (644)
T PRK15455 73 PAFEEFYGMEEAIEQIVSYFRH---A--AQGLEE-KKQILYLLGPVGGGKSSLAERLKSLMERVPIYVLKA 137 (644)
T ss_pred cchhcccCcHHHHHHHHHHHHH---H--HHhcCC-CCceEEEecCCCCCchHHHHHHHHHHHhCcceeecC
Confidence 3589999999888887655421 1 111121 234688999999999999999999874 46666544
No 309
>cd01123 Rad51_DMC1_radA Rad51_DMC1_radA,B. This group of recombinases includes the eukaryotic proteins RAD51, RAD55/57 and the meiosis-specific protein DMC1, and the archaeal proteins radA and radB. They are closely related to the bacterial RecA group. Rad51 proteins catalyze a similiar recombination reaction as RecA, using ATP-dependent DNA binding activity and a DNA-dependent ATPase. However, this reaction is less efficient and requires accessory proteins such as RAD55/57 .
Probab=97.01 E-value=0.0017 Score=69.22 Aligned_cols=117 Identities=17% Similarity=0.179 Sum_probs=65.1
Q ss_pred CCCCCceeEecCCCCCChHHHHHHHHHHc---------CCCEEEeechhhhh-hhh-------------------cc--c
Q 035561 484 GARAPRGVLIVGERGTGKTSLALAIAAEA---------RVPVVNVEAQELEA-GLW-------------------VG--Q 532 (979)
Q Consensus 484 G~~~P~gVLL~GPPGTGKTtLArAlA~el---------g~~~i~Is~sdL~~-~~~-------------------vG--~ 532 (979)
|++...-+.|+||||||||+++..+|... +..++++++.+-.. ..+ .. .
T Consensus 15 Gi~~g~i~~i~G~~GsGKT~l~~~l~~~~~~~~~~~g~~~~viyi~~e~~~~~~rl~~~~~~~~~~~~~~~~~i~~~~~~ 94 (235)
T cd01123 15 GIETGSITEIFGEFGSGKTQLCHQLAVTVQLPIELGGLEGKAVYIDTEGTFRPERLVQIAERFGLDPEEVLDNIYVARAY 94 (235)
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHHHeeCccccCCCCccEEEEeCCCCcCHHHHHHHHHHhccChHhHhcCEEEEecC
Confidence 56666778999999999999999998653 25777887654110 000 00 0
Q ss_pred chhhH----HHHHHHHHhc-CCeEEEEcCccccccccccccCCCchhhHHHHHHHHhhhcccccCCeEEEEecc
Q 035561 533 SASNV----RELFQTARDL-APVIIFVEDFDLFAGVRGQFIHTKQQDHESFINQLLVELDGFEKQDGVVLMATT 601 (979)
Q Consensus 533 ~~~~I----r~lF~~A~~~-aP~ILfIDEIDaL~~~r~~~~~~~~~~~~~iln~LL~~LDg~~~~~~ViVIATT 601 (979)
+...+ ..+-...... .+++|+||-+.++....-.. ........+.+..++..|..+....++.|+.|.
T Consensus 95 ~~~~l~~~l~~l~~~l~~~~~~~liVIDSis~~~~~~~~~-~~~~~~r~~~l~~~~~~L~~la~~~~~avl~tn 167 (235)
T cd01123 95 NSDHQLQLLEELEAILIESSRIKLVIVDSVTALFRAEFDG-RGELAERQQHLAKLLRTLKRLADEFNVAVVITN 167 (235)
T ss_pred CHHHHHHHHHHHHHHHhhcCCeeEEEEeCcHHHHHHHhcC-CccHHHHHHHHHHHHHHHHHHHHHhCCEEEEec
Confidence 01111 2222222344 78999999999875321000 000123334556666666555444455666554
No 310
>PF13191 AAA_16: AAA ATPase domain; PDB: 2V1U_A.
Probab=97.00 E-value=0.00053 Score=69.60 Aligned_cols=59 Identities=27% Similarity=0.481 Sum_probs=36.3
Q ss_pred ccCcHHHHHHHHHHHHhhcChhHHHhcCCCCCceeEecCCCCCChHHHHHHHHHHcCCC---EEEeechhh
Q 035561 457 FASVESMREEINEVVAFLQNPSAFQEMGARAPRGVLIVGERGTGKTSLALAIAAEARVP---VVNVEAQEL 524 (979)
Q Consensus 457 IvGleevke~L~eiV~~L~~p~~f~~lG~~~P~gVLL~GPPGTGKTtLArAlA~elg~~---~i~Is~sdL 524 (979)
++|-++..+.|...+. ......++.++|+|++|||||++++++...+..+ ++.+++...
T Consensus 2 fvgR~~e~~~l~~~l~---------~~~~~~~~~~ll~G~~G~GKT~ll~~~~~~~~~~~~~~~~~~~~~~ 63 (185)
T PF13191_consen 2 FVGREEEIERLRDLLD---------AAQSGSPRNLLLTGESGSGKTSLLRALLDRLAERGGYVISINCDDS 63 (185)
T ss_dssp -TT-HHHHHHHHHTTG---------GTSS-----EEE-B-TTSSHHHHHHHHHHHHHHHT--EEEEEEETT
T ss_pred CCCHHHHHHHHHHHHH---------HHHcCCCcEEEEECCCCCCHHHHHHHHHHHHHhcCCEEEEEEEecc
Confidence 5777876666665443 1123446789999999999999999998877433 777777665
No 311
>cd00464 SK Shikimate kinase (SK) is the fifth enzyme in the shikimate pathway, a seven-step biosynthetic pathway which converts erythrose-4-phosphate to chorismic acid, found in bacteria, fungi and plants. Chorismic acid is a important intermediate in the synthesis of aromatic compounds, such as aromatic amino acids, p-aminobenzoic acid, folate and ubiquinone. Shikimate kinase catalyses the phosphorylation of the 3-hydroxyl group of shikimic acid using ATP.
Probab=97.00 E-value=0.00059 Score=67.60 Aligned_cols=31 Identities=26% Similarity=0.605 Sum_probs=28.1
Q ss_pred eeEecCCCCCChHHHHHHHHHHcCCCEEEee
Q 035561 490 GVLIVGERGTGKTSLALAIAAEARVPVVNVE 520 (979)
Q Consensus 490 gVLL~GPPGTGKTtLArAlA~elg~~~i~Is 520 (979)
+|+|+|+||||||++|+.+|..++.+++..+
T Consensus 1 ~i~l~G~~GsGKstla~~la~~l~~~~~~~d 31 (154)
T cd00464 1 NIVLIGMMGAGKTTVGRLLAKALGLPFVDLD 31 (154)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHhCCCEEEch
Confidence 4899999999999999999999999988554
No 312
>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=97.00 E-value=0.0024 Score=69.38 Aligned_cols=25 Identities=36% Similarity=0.400 Sum_probs=21.5
Q ss_pred CceeEecCCCCCChHHHHHHHHHHc
Q 035561 488 PRGVLIVGERGTGKTSLALAIAAEA 512 (979)
Q Consensus 488 P~gVLL~GPPGTGKTtLArAlA~el 512 (979)
..-+-|.||+|||||||.+.+|+-.
T Consensus 29 GEfvsilGpSGcGKSTLLriiAGL~ 53 (248)
T COG1116 29 GEFVAILGPSGCGKSTLLRLIAGLE 53 (248)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCC
Confidence 3448899999999999999999843
No 313
>PRK03839 putative kinase; Provisional
Probab=96.98 E-value=0.00056 Score=70.30 Aligned_cols=30 Identities=27% Similarity=0.449 Sum_probs=27.6
Q ss_pred eEecCCCCCChHHHHHHHHHHcCCCEEEee
Q 035561 491 VLIVGERGTGKTSLALAIAAEARVPVVNVE 520 (979)
Q Consensus 491 VLL~GPPGTGKTtLArAlA~elg~~~i~Is 520 (979)
|+|.|+||+||||+++.+|+.++.+++.++
T Consensus 3 I~l~G~pGsGKsT~~~~La~~~~~~~id~d 32 (180)
T PRK03839 3 IAITGTPGVGKTTVSKLLAEKLGYEYVDLT 32 (180)
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCcEEehh
Confidence 889999999999999999999999987654
No 314
>PRK06762 hypothetical protein; Provisional
Probab=96.97 E-value=0.0022 Score=64.83 Aligned_cols=38 Identities=21% Similarity=0.318 Sum_probs=31.9
Q ss_pred CceeEecCCCCCChHHHHHHHHHHcCCCEEEeechhhh
Q 035561 488 PRGVLIVGERGTGKTSLALAIAAEARVPVVNVEAQELE 525 (979)
Q Consensus 488 P~gVLL~GPPGTGKTtLArAlA~elg~~~i~Is~sdL~ 525 (979)
|.-++|+|+|||||||+|+.+++.++..++.++...+.
T Consensus 2 ~~li~i~G~~GsGKST~A~~L~~~l~~~~~~i~~D~~r 39 (166)
T PRK06762 2 TTLIIIRGNSGSGKTTIAKQLQERLGRGTLLVSQDVVR 39 (166)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCCCeEEecHHHHH
Confidence 55689999999999999999999997667777766554
No 315
>PRK13695 putative NTPase; Provisional
Probab=96.97 E-value=0.0092 Score=61.14 Aligned_cols=22 Identities=45% Similarity=0.582 Sum_probs=20.2
Q ss_pred eEecCCCCCChHHHHHHHHHHc
Q 035561 491 VLIVGERGTGKTSLALAIAAEA 512 (979)
Q Consensus 491 VLL~GPPGTGKTtLArAlA~el 512 (979)
++|+|++|+||||+++.+++.+
T Consensus 3 i~ltG~~G~GKTTll~~i~~~l 24 (174)
T PRK13695 3 IGITGPPGVGKTTLVLKIAELL 24 (174)
T ss_pred EEEECCCCCCHHHHHHHHHHHH
Confidence 7899999999999999988775
No 316
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=96.97 E-value=0.0073 Score=71.22 Aligned_cols=37 Identities=32% Similarity=0.432 Sum_probs=29.9
Q ss_pred CCCceeEecCCCCCChHHHHHHHHHHc---CCCEEEeech
Q 035561 486 RAPRGVLIVGERGTGKTSLALAIAAEA---RVPVVNVEAQ 522 (979)
Q Consensus 486 ~~P~gVLL~GPPGTGKTtLArAlA~el---g~~~i~Is~s 522 (979)
..|..++++|++|+||||++..+|..+ |..+..+++.
T Consensus 93 ~~p~vI~lvG~~GsGKTTtaakLA~~L~~~g~kV~lV~~D 132 (437)
T PRK00771 93 LKPQTIMLVGLQGSGKTTTAAKLARYFKKKGLKVGLVAAD 132 (437)
T ss_pred CCCeEEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEecCC
Confidence 457889999999999999999999876 5556656554
No 317
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=96.96 E-value=0.0044 Score=65.45 Aligned_cols=112 Identities=21% Similarity=0.355 Sum_probs=60.3
Q ss_pred CceeEecCCCCCChHHHHHHHHHHc---CCCEEEeechhhhhh------hh---cc----------cchhhHHHHHHHHH
Q 035561 488 PRGVLIVGERGTGKTSLALAIAAEA---RVPVVNVEAQELEAG------LW---VG----------QSASNVRELFQTAR 545 (979)
Q Consensus 488 P~gVLL~GPPGTGKTtLArAlA~el---g~~~i~Is~sdL~~~------~~---vG----------~~~~~Ir~lF~~A~ 545 (979)
|+-++|.||+|+||||.+-.+|..+ +..+--+++..+-.+ .| .| .....+++..+.+.
T Consensus 1 p~vi~lvGptGvGKTTt~aKLAa~~~~~~~~v~lis~D~~R~ga~eQL~~~a~~l~vp~~~~~~~~~~~~~~~~~l~~~~ 80 (196)
T PF00448_consen 1 PKVIALVGPTGVGKTTTIAKLAARLKLKGKKVALISADTYRIGAVEQLKTYAEILGVPFYVARTESDPAEIAREALEKFR 80 (196)
T ss_dssp SEEEEEEESTTSSHHHHHHHHHHHHHHTT--EEEEEESTSSTHHHHHHHHHHHHHTEEEEESSTTSCHHHHHHHHHHHHH
T ss_pred CEEEEEECCCCCchHhHHHHHHHHHhhccccceeecCCCCCccHHHHHHHHHHHhccccchhhcchhhHHHHHHHHHHHh
Confidence 6779999999999999888887765 333333333211000 00 01 11223444555555
Q ss_pred hcCCeEEEEcCccccccccccccCCCchhhHHHHHHHHhhhcccccCCeEEEEecccchhhchhhh
Q 035561 546 DLAPVIIFVEDFDLFAGVRGQFIHTKQQDHESFINQLLVELDGFEKQDGVVLMATTRNIKQIDEAL 611 (979)
Q Consensus 546 ~~aP~ILfIDEIDaL~~~r~~~~~~~~~~~~~iln~LL~~LDg~~~~~~ViVIATTN~pe~LDpAL 611 (979)
...-.+|+||=.... ......+.+|-..++.....+..+|+.+|...+.++...
T Consensus 81 ~~~~D~vlIDT~Gr~------------~~d~~~~~el~~~~~~~~~~~~~LVlsa~~~~~~~~~~~ 134 (196)
T PF00448_consen 81 KKGYDLVLIDTAGRS------------PRDEELLEELKKLLEALNPDEVHLVLSATMGQEDLEQAL 134 (196)
T ss_dssp HTTSSEEEEEE-SSS------------STHHHHHHHHHHHHHHHSSSEEEEEEEGGGGGHHHHHHH
T ss_pred hcCCCEEEEecCCcc------------hhhHHHHHHHHHHhhhcCCccceEEEecccChHHHHHHH
Confidence 444578888875321 112233333333333334556678888888888777443
No 318
>PRK09354 recA recombinase A; Provisional
Probab=96.96 E-value=0.0031 Score=72.15 Aligned_cols=79 Identities=24% Similarity=0.213 Sum_probs=50.5
Q ss_pred CCCCCceeEecCCCCCChHHHHHHHHHHc---CCCEEEeechhhhhhhh---------------cccchhhHHHHHHHHH
Q 035561 484 GARAPRGVLIVGERGTGKTSLALAIAAEA---RVPVVNVEAQELEAGLW---------------VGQSASNVRELFQTAR 545 (979)
Q Consensus 484 G~~~P~gVLL~GPPGTGKTtLArAlA~el---g~~~i~Is~sdL~~~~~---------------vG~~~~~Ir~lF~~A~ 545 (979)
|++..+-++++||||||||+||-.++.+. |..+++++...-....+ +...+..+..+-...+
T Consensus 56 Gip~G~IteI~G~~GsGKTtLal~~~~~~~~~G~~~~yId~E~s~~~~~a~~lGvdld~lli~qp~~~Eq~l~i~~~li~ 135 (349)
T PRK09354 56 GLPRGRIVEIYGPESSGKTTLALHAIAEAQKAGGTAAFIDAEHALDPVYAKKLGVDIDNLLVSQPDTGEQALEIADTLVR 135 (349)
T ss_pred CCcCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEECCccchHHHHHHHcCCCHHHeEEecCCCHHHHHHHHHHHhh
Confidence 45656678899999999999999876544 67778777654211110 0111222222222334
Q ss_pred hcCCeEEEEcCcccccc
Q 035561 546 DLAPVIIFVEDFDLFAG 562 (979)
Q Consensus 546 ~~aP~ILfIDEIDaL~~ 562 (979)
...+.+|+||=+-++.+
T Consensus 136 s~~~~lIVIDSvaaL~~ 152 (349)
T PRK09354 136 SGAVDLIVVDSVAALVP 152 (349)
T ss_pred cCCCCEEEEeChhhhcc
Confidence 56789999999999875
No 319
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=96.96 E-value=0.00099 Score=70.11 Aligned_cols=68 Identities=22% Similarity=0.323 Sum_probs=43.3
Q ss_pred eeEecCCCCCChHHHHHHHHHHcCC----CEEEeech-hhhhh--------hhcccchhhHHHHHHHHHhcCCeEEEEcC
Q 035561 490 GVLIVGERGTGKTSLALAIAAEARV----PVVNVEAQ-ELEAG--------LWVGQSASNVRELFQTARDLAPVIIFVED 556 (979)
Q Consensus 490 gVLL~GPPGTGKTtLArAlA~elg~----~~i~Is~s-dL~~~--------~~vG~~~~~Ir~lF~~A~~~aP~ILfIDE 556 (979)
-+++.||+||||||++++++..... .++.+... ++... .-+|.....+.+.+..+....|.++++||
T Consensus 3 lilI~GptGSGKTTll~~ll~~~~~~~~~~i~t~e~~~E~~~~~~~~~i~q~~vg~~~~~~~~~i~~aLr~~pd~ii~gE 82 (198)
T cd01131 3 LVLVTGPTGSGKSTTLAAMIDYINKNKTHHILTIEDPIEFVHESKRSLINQREVGLDTLSFENALKAALRQDPDVILVGE 82 (198)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhhhcCCcEEEEEcCCccccccCccceeeecccCCCccCHHHHHHHHhcCCcCEEEEcC
Confidence 3789999999999999999988742 22222211 11100 01122233455566667677899999999
Q ss_pred c
Q 035561 557 F 557 (979)
Q Consensus 557 I 557 (979)
+
T Consensus 83 i 83 (198)
T cd01131 83 M 83 (198)
T ss_pred C
Confidence 7
No 320
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=96.95 E-value=0.0099 Score=69.01 Aligned_cols=131 Identities=11% Similarity=0.147 Sum_probs=69.6
Q ss_pred HHHHHHHHHHHHh-hcChhHHHhcCCCCCceeEecCCCCCChHHHHHHHHHHc---CCCEEEeechhhhh---hh-----
Q 035561 461 ESMREEINEVVAF-LQNPSAFQEMGARAPRGVLIVGERGTGKTSLALAIAAEA---RVPVVNVEAQELEA---GL----- 528 (979)
Q Consensus 461 eevke~L~eiV~~-L~~p~~f~~lG~~~P~gVLL~GPPGTGKTtLArAlA~el---g~~~i~Is~sdL~~---~~----- 528 (979)
+++.+.+.+.+.. +..+..+ ...|+-++|.||+|+||||++..+|..+ +..+..+++...-. +.
T Consensus 217 ~~~~~~l~~~l~~~l~~~~~~----~~~~~vI~LVGptGvGKTTTiaKLA~~L~~~GkkVglI~aDt~RiaAvEQLk~ya 292 (436)
T PRK11889 217 EEVIEYILEDMRSHFNTENVF----EKEVQTIALIGPTGVGKTTTLAKMAWQFHGKKKTVGFITTDHSRIGTVQQLQDYV 292 (436)
T ss_pred HHHHHHHHHHHHHHhcccccc----ccCCcEEEEECCCCCcHHHHHHHHHHHHHHcCCcEEEEecCCcchHHHHHHHHHh
Confidence 4555555554433 3222111 2346789999999999999999999876 34454454422100 00
Q ss_pred -------hcccchhhHHHHHHHHHh-cCCeEEEEcCccccccccccccCCCchhhHHHHHHHHhhhcccccCCeEEEEec
Q 035561 529 -------WVGQSASNVRELFQTARD-LAPVIIFVEDFDLFAGVRGQFIHTKQQDHESFINQLLVELDGFEKQDGVVLMAT 600 (979)
Q Consensus 529 -------~vG~~~~~Ir~lF~~A~~-~aP~ILfIDEIDaL~~~r~~~~~~~~~~~~~iln~LL~~LDg~~~~~~ViVIAT 600 (979)
++......+.+....++. ..-.+||||-.... ......+..+...++.......++|+.+
T Consensus 293 e~lgipv~v~~d~~~L~~aL~~lk~~~~~DvVLIDTaGRs------------~kd~~lm~EL~~~lk~~~PdevlLVLsA 360 (436)
T PRK11889 293 KTIGFEVIAVRDEAAMTRALTYFKEEARVDYILIDTAGKN------------YRASETVEEMIETMGQVEPDYICLTLSA 360 (436)
T ss_pred hhcCCcEEecCCHHHHHHHHHHHHhccCCCEEEEeCcccc------------CcCHHHHHHHHHHHhhcCCCeEEEEECC
Confidence 112334445555555543 23578888876422 1123345555555544344444566655
Q ss_pred ccchhhc
Q 035561 601 TRNIKQI 607 (979)
Q Consensus 601 TN~pe~L 607 (979)
|.....+
T Consensus 361 Ttk~~d~ 367 (436)
T PRK11889 361 SMKSKDM 367 (436)
T ss_pred ccChHHH
Confidence 5444443
No 321
>KOG0482 consensus DNA replication licensing factor, MCM7 component [Replication, recombination and repair]
Probab=96.93 E-value=0.0038 Score=73.03 Aligned_cols=202 Identities=14% Similarity=0.175 Sum_probs=108.6
Q ss_pred CcccCcHHHHHHHHHHHHhhcChhHHHhcC--CCCCceeEecCCCCCChHHHHHHHHHHcCCCEEEeechhhhhhhhccc
Q 035561 455 KDFASVESMREEINEVVAFLQNPSAFQEMG--ARAPRGVLIVGERGTGKTSLALAIAAEARVPVVNVEAQELEAGLWVGQ 532 (979)
Q Consensus 455 ~DIvGleevke~L~eiV~~L~~p~~f~~lG--~~~P~gVLL~GPPGTGKTtLArAlA~elg~~~i~Is~sdL~~~~~vG~ 532 (979)
-+|-|.+++|+.|.-++.- -+++-..-| ++-.-+|+|.|.||+.||-|.+.+.+-+-...+..--.. .=+|-
T Consensus 342 PEIyGheDVKKaLLLlLVG--gvd~~~~dGMKIRGdINicLmGDPGVAKSQLLkyi~rlapRgvYTTGrGS----SGVGL 415 (721)
T KOG0482|consen 342 PEIYGHEDVKKALLLLLVG--GVDKSPGDGMKIRGDINICLMGDPGVAKSQLLKYISRLAPRGVYTTGRGS----SGVGL 415 (721)
T ss_pred hhhccchHHHHHHHHHhhC--CCCCCCCCCceeecceeEEecCCCchhHHHHHHHHHhcCcccceecCCCC----Ccccc
Confidence 3688999999998644322 111111112 233457999999999999999999998766655442211 11344
Q ss_pred chhhHHHHHHHHH--------hcCCeEEEEcCccccccccccccCCCchhhHHHHHHHHhhh--cccc--cCCeEEEEec
Q 035561 533 SASNVRELFQTAR--------DLAPVIIFVEDFDLFAGVRGQFIHTKQQDHESFINQLLVEL--DGFE--KQDGVVLMAT 600 (979)
Q Consensus 533 ~~~~Ir~lF~~A~--------~~aP~ILfIDEIDaL~~~r~~~~~~~~~~~~~iln~LL~~L--Dg~~--~~~~ViVIAT 600 (979)
++.-+++-..--. -...+|-+|||+|.+..... .....++.|=-..+ .|+. -+-+..|+||
T Consensus 416 TAAVmkDpvTgEM~LEGGALVLAD~GICCIDEfDKM~e~DR-------tAIHEVMEQQTISIaKAGI~TtLNAR~sILaA 488 (721)
T KOG0482|consen 416 TAAVMKDPVTGEMVLEGGALVLADGGICCIDEFDKMDESDR-------TAIHEVMEQQTISIAKAGINTTLNARTSILAA 488 (721)
T ss_pred chhhhcCCCCCeeEeccceEEEccCceEeehhhhhhhhhhh-------HHHHHHHHhhhhhhhhhccccchhhhHHhhhh
Confidence 4443332111100 01247889999998843110 11112222111111 1221 1235678888
Q ss_pred ccch----------h---hchhhhhcCCceeeE-eccCCCCHHHHHHHHHHHH----HhccchhhhhhhhHH------HH
Q 035561 601 TRNI----------K---QIDEALQRPGRMDRI-FNLQKPTQSEREKILRIAA----QETMDEELIDLVDWR------KV 656 (979)
Q Consensus 601 TN~p----------e---~LDpALlRpgRFd~~-I~~~~Pd~eeR~~IL~~~l----~~~~~~~l~~dvdL~------~L 656 (979)
+|.. + .||+||++ |||.. +-.+.||.+.=+.+-++.. ....+....+.++.+ .+
T Consensus 489 ANPayGRYnprrs~e~NI~LPaALLS--RFDll~Li~D~pdrd~D~~LA~HiTyVH~H~~qp~~~fepl~~~~mR~yI~~ 566 (721)
T KOG0482|consen 489 ANPAYGRYNPRRSPEQNINLPAALLS--RFDLLWLIQDRPDRDNDLRLAQHITYVHQHEEQPPLDFEPLDPNLMRRYISL 566 (721)
T ss_pred cCccccccCcccChhHhcCCcHHHHH--hhhhhhhhccCCcccchHHHHHHhHhhhccCCCCCccCCCCCHHHHHHHHHH
Confidence 8872 1 47999999 99975 4456777766555555433 222111112223333 34
Q ss_pred HHHcCCCCHHHHHHH
Q 035561 657 AEKTALLRPIELKLV 671 (979)
Q Consensus 657 A~~T~GfsgaDL~~L 671 (979)
|++..-..+.+|..-
T Consensus 567 ak~~~P~vp~~l~dy 581 (721)
T KOG0482|consen 567 AKRKNPVVPEALADY 581 (721)
T ss_pred HhhcCCCCCHHHHHH
Confidence 555555666666643
No 322
>PRK00625 shikimate kinase; Provisional
Probab=96.92 E-value=0.00075 Score=69.92 Aligned_cols=31 Identities=26% Similarity=0.431 Sum_probs=28.9
Q ss_pred eeEecCCCCCChHHHHHHHHHHcCCCEEEee
Q 035561 490 GVLIVGERGTGKTSLALAIAAEARVPVVNVE 520 (979)
Q Consensus 490 gVLL~GPPGTGKTtLArAlA~elg~~~i~Is 520 (979)
+|+|+|.|||||||+++.+|+.++.+++.++
T Consensus 2 ~I~LiG~pGsGKTT~~k~La~~l~~~~id~D 32 (173)
T PRK00625 2 QIFLCGLPTVGKTSFGKALAKFLSLPFFDTD 32 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCCEEEhh
Confidence 5899999999999999999999999998765
No 323
>TIGR03877 thermo_KaiC_1 KaiC domain protein, Ph0284 family. Members of this family contain a single copy of the KaiC domain (pfam06745) that occurs in two copies of the circadian clock protein kinase KaiC itself. Members occur primarily in thermophilic archaea and in Thermotoga.
Probab=96.92 E-value=0.0047 Score=66.77 Aligned_cols=39 Identities=26% Similarity=0.330 Sum_probs=31.5
Q ss_pred CCCCCceeEecCCCCCChHHHHHHHHHH---cCCCEEEeech
Q 035561 484 GARAPRGVLIVGERGTGKTSLALAIAAE---ARVPVVNVEAQ 522 (979)
Q Consensus 484 G~~~P~gVLL~GPPGTGKTtLArAlA~e---lg~~~i~Is~s 522 (979)
|++....+|++||||||||++|..++.+ .|.+.++++..
T Consensus 17 G~~~gs~~lI~G~pGsGKT~la~~~l~~~~~~ge~~lyvs~e 58 (237)
T TIGR03877 17 GIPERNVVLLSGGPGTGKSIFSQQFLWNGLQMGEPGIYVALE 58 (237)
T ss_pred CCcCCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCcEEEEEee
Confidence 7777888999999999999999876654 36777777654
No 324
>KOG0480 consensus DNA replication licensing factor, MCM6 component [Replication, recombination and repair]
Probab=96.92 E-value=0.0045 Score=74.14 Aligned_cols=167 Identities=16% Similarity=0.177 Sum_probs=99.4
Q ss_pred CCcccCcHHHHHHHHHHHHhhcChhHHHh--cCCCCCceeEecCCCCCChHHHHHHHHHHcCCCEEEeechhhhhhhhcc
Q 035561 454 LKDFASVESMREEINEVVAFLQNPSAFQE--MGARAPRGVLIVGERGTGKTSLALAIAAEARVPVVNVEAQELEAGLWVG 531 (979)
Q Consensus 454 f~DIvGleevke~L~eiV~~L~~p~~f~~--lG~~~P~gVLL~GPPGTGKTtLArAlA~elg~~~i~Is~sdL~~~~~vG 531 (979)
|..|-|.+.+|.-+.-. .+.-..+... ..++---+|++.|.||||||-+.+++++-+...++. ++.. +.-.|
T Consensus 344 ~PsIyGhe~VK~GilL~--LfGGv~K~a~eg~~lRGDinv~iVGDPgt~KSQfLk~v~~fsPR~vYt-sGka---SSaAG 417 (764)
T KOG0480|consen 344 FPSIYGHELVKAGILLS--LFGGVHKSAGEGTSLRGDINVCIVGDPGTGKSQFLKAVCAFSPRSVYT-SGKA---SSAAG 417 (764)
T ss_pred CccccchHHHHhhHHHH--HhCCccccCCCCccccCCceEEEeCCCCccHHHHHHHHhccCCcceEe-cCcc---ccccc
Confidence 66788999998876521 1221122221 123334689999999999999999999988766543 3321 11123
Q ss_pred cchhhHHH--HHHHH---Hh---cCCeEEEEcCccccccccccccCCCchhhHHHHHHHHhhhcc---------c--ccC
Q 035561 532 QSASNVRE--LFQTA---RD---LAPVIIFVEDFDLFAGVRGQFIHTKQQDHESFINQLLVELDG---------F--EKQ 592 (979)
Q Consensus 532 ~~~~~Ir~--lF~~A---~~---~aP~ILfIDEIDaL~~~r~~~~~~~~~~~~~iln~LL~~LDg---------~--~~~ 592 (979)
-++.-+++ -++.+ .+ ...+|=.|||+|.+.- .+.. .++..|+. + .-+
T Consensus 418 LTaaVvkD~esgdf~iEAGALmLADnGICCIDEFDKMd~----------~dqv----AihEAMEQQtISIaKAGv~aTLn 483 (764)
T KOG0480|consen 418 LTAAVVKDEESGDFTIEAGALMLADNGICCIDEFDKMDV----------KDQV----AIHEAMEQQTISIAKAGVVATLN 483 (764)
T ss_pred ceEEEEecCCCCceeeecCcEEEccCceEEechhcccCh----------HhHH----HHHHHHHhheehheecceEEeec
Confidence 33222221 11111 11 1357889999998831 1111 22223322 1 112
Q ss_pred CeEEEEecccchh-------------hchhhhhcCCceeeE-eccCCCCHHHHHHHHHHHHHhc
Q 035561 593 DGVVLMATTRNIK-------------QIDEALQRPGRMDRI-FNLQKPTQSEREKILRIAAQET 642 (979)
Q Consensus 593 ~~ViVIATTN~pe-------------~LDpALlRpgRFd~~-I~~~~Pd~eeR~~IL~~~l~~~ 642 (979)
-+.-|+||+|... .+.+++++ |||.. |-++.|++..=..|-++.+...
T Consensus 484 ARtSIlAAANPv~GhYdR~ktl~eNi~msApimS--RFDL~FiLlD~~nE~~D~~ia~hIld~h 545 (764)
T KOG0480|consen 484 ARTSILAAANPVGGHYDRKKTLRENINMSAPIMS--RFDLFFILLDDCNEVVDYAIARHILDLH 545 (764)
T ss_pred chhhhhhhcCCcCCccccccchhhhcCCCchhhh--hhcEEEEEecCCchHHHHHHHHHHHHHh
Confidence 3456889998832 36889999 99975 6779999988888888777654
No 325
>PF06745 KaiC: KaiC; InterPro: IPR014774 This entry represents a domain within bacterial and archaeal proteins, most of which are hypothetical. More than one copy is sometimes found in each protein in this entry. These include KaiC, which is one of the Kai proteins among which direct protein-protein association may be a critical process in the generation of circadian rhythms in cyanobacteria []. The circadian clock protein KaiC, is encoded in the kaiABC operon that controls circadian rhythms and may be universal in Cyanobacteria. Each member contains two copies of this domain, which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor. RadA/Sms is a highly conserved eubacterial protein that shares sequence similarity with both RecA strand transferase and lon protease. The RadA/Sms family are probable ATP-dependent proteases involved in both DNA repair and degradation of proteins, peptides, glycopeptides. They are classified in as non-peptidase homologues and unassigned peptidases in MEROPS peptidase family S16 (lon protease family, clan SJ). RadA/Sms is involved in recombination and recombinational repair, most likely involving the stabilisation or processing of branched DNA molecules or blocked replication forks because of its genetic redundancy with RecG and RuvABC [].; PDB: 2W0M_A 2ZTS_C 4DUG_B 3K0E_B 3K09_B 3S1A_E 3JZM_E 2GBL_B 3DVL_A 1TF7_C ....
Probab=96.90 E-value=0.0025 Score=67.86 Aligned_cols=38 Identities=37% Similarity=0.420 Sum_probs=30.1
Q ss_pred CCCCCceeEecCCCCCChHHHHHHHHHHc----CCCEEEeec
Q 035561 484 GARAPRGVLIVGERGTGKTSLALAIAAEA----RVPVVNVEA 521 (979)
Q Consensus 484 G~~~P~gVLL~GPPGTGKTtLArAlA~el----g~~~i~Is~ 521 (979)
|++.+..+|+.||||||||+++..++.+. |.++++++.
T Consensus 15 Gip~gs~~li~G~~GsGKT~l~~q~l~~~~~~~ge~vlyvs~ 56 (226)
T PF06745_consen 15 GIPKGSVVLISGPPGSGKTTLALQFLYNGLKNFGEKVLYVSF 56 (226)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHHHHHHHHT--EEEEES
T ss_pred CCCCCcEEEEEeCCCCCcHHHHHHHHHHhhhhcCCcEEEEEe
Confidence 67778889999999999999999876543 788888775
No 326
>TIGR00416 sms DNA repair protein RadA. The gene protuct codes for a probable ATP-dependent protease involved in both DNA repair and degradation of proteins, peptides, glycopeptides. Also known as sms. Residues 11-28 of the SEED alignment contain a putative Zn binding domain. Residues 110-117 of the seed contain a putative ATP binding site both documented in Haemophilus and in Listeria monocytogenes. for E.coli see ( J. BACTERIOL. 178:5045-5048(1996)).
Probab=96.89 E-value=0.0037 Score=74.09 Aligned_cols=79 Identities=22% Similarity=0.354 Sum_probs=54.7
Q ss_pred CCCCCceeEecCCCCCChHHHHHHHHHHc---CCCEEEeechhhhhhh-----hccc--------chhhHHHHHHHHHhc
Q 035561 484 GARAPRGVLIVGERGTGKTSLALAIAAEA---RVPVVNVEAQELEAGL-----WVGQ--------SASNVRELFQTARDL 547 (979)
Q Consensus 484 G~~~P~gVLL~GPPGTGKTtLArAlA~el---g~~~i~Is~sdL~~~~-----~vG~--------~~~~Ir~lF~~A~~~ 547 (979)
|+.+..-+||+|+||+|||+++..+|..+ +.+++++++.+-.... -.|. .+..+..+...+...
T Consensus 90 Gi~~GsvilI~G~pGsGKTTL~lq~a~~~a~~g~kvlYvs~EEs~~qi~~ra~rlg~~~~~l~~~~e~~~~~I~~~i~~~ 169 (454)
T TIGR00416 90 GIVPGSLILIGGDPGIGKSTLLLQVACQLAKNQMKVLYVSGEESLQQIKMRAIRLGLPEPNLYVLSETNWEQICANIEEE 169 (454)
T ss_pred CccCCeEEEEEcCCCCCHHHHHHHHHHHHHhcCCcEEEEECcCCHHHHHHHHHHcCCChHHeEEcCCCCHHHHHHHHHhc
Confidence 56666778999999999999999998765 4578888774322100 0111 123455666666777
Q ss_pred CCeEEEEcCcccccc
Q 035561 548 APVIIFVEDFDLFAG 562 (979)
Q Consensus 548 aP~ILfIDEIDaL~~ 562 (979)
.|.+|+||.|..+..
T Consensus 170 ~~~~vVIDSIq~l~~ 184 (454)
T TIGR00416 170 NPQACVIDSIQTLYS 184 (454)
T ss_pred CCcEEEEecchhhcc
Confidence 899999999988753
No 327
>PF06309 Torsin: Torsin; InterPro: IPR010448 This family consists of several eukaryotic torsin proteins. Torsion dystonia is an autosomal dominant movement disorder characterised by involuntary, repetitive muscle contractions and twisted postures. The most severe early-onset form of dystonia has been linked to mutations in the human DYT1 (TOR1A) gene encoding a protein termed torsinA. While causative genetic alterations have been identified, the function of torsin proteins and the molecular mechanism underlying dystonia remain unknown. Phylogenetic analysis of the torsin protein family indicates these proteins share distant sequence similarity with the large and diverse family of AAA ATPase, central region containing proteins () proteins. It has been suggested that torsins play a role in effectively managing protein folding and that possible breakdown in a neuroprotective mechanism that is, in part, mediated by torsins may be responsible for the neuronal dysfunction associated with dystonia [].; GO: 0005524 ATP binding, 0051085 chaperone mediated protein folding requiring cofactor
Probab=96.89 E-value=0.0039 Score=61.49 Aligned_cols=52 Identities=25% Similarity=0.290 Sum_probs=40.6
Q ss_pred CcccCcHHHHHHHHHHHHh-hcChhHHHhcCCCCCceeEecCCCCCChHHHHHHHHHHc
Q 035561 455 KDFASVESMREEINEVVAF-LQNPSAFQEMGARAPRGVLIVGERGTGKTSLALAIAAEA 512 (979)
Q Consensus 455 ~DIvGleevke~L~eiV~~-L~~p~~f~~lG~~~P~gVLL~GPPGTGKTtLArAlA~el 512 (979)
..+.|++-+++.+...+.. +.++ .-+.|--+-|+|+||||||.+++.||+.+
T Consensus 25 ~~l~GQhla~~~v~~ai~~~l~~~------~p~KpLVlSfHG~tGtGKn~v~~liA~~l 77 (127)
T PF06309_consen 25 RNLFGQHLAVEVVVNAIKGHLANP------NPRKPLVLSFHGWTGTGKNFVSRLIAEHL 77 (127)
T ss_pred HHccCcHHHHHHHHHHHHHHHcCC------CCCCCEEEEeecCCCCcHHHHHHHHHHHH
Confidence 4688999888887766654 5443 24556667799999999999999999985
No 328
>TIGR01420 pilT_fam pilus retraction protein PilT. This model represents the PilT subfamily of proteins related to GspE, a protein involved in type II secretion (also called the General Secretion Pathway). PilT is an apparent cytosolic ATPase associated with type IV pilus systems. It is not required for pilin biogenesis, but is required for twitching motility and social gliding behaviors, shown in some species, powered by pilus retraction. Members of this family may be found in some species that type IV pili but have related structures for DNA uptake and natural transformation.
Probab=96.86 E-value=0.0015 Score=74.48 Aligned_cols=71 Identities=17% Similarity=0.270 Sum_probs=46.4
Q ss_pred CceeEecCCCCCChHHHHHHHHHHcCC----CEEEeec-hhhh--------hhhhcccchhhHHHHHHHHHhcCCeEEEE
Q 035561 488 PRGVLIVGERGTGKTSLALAIAAEARV----PVVNVEA-QELE--------AGLWVGQSASNVRELFQTARDLAPVIIFV 554 (979)
Q Consensus 488 P~gVLL~GPPGTGKTtLArAlA~elg~----~~i~Is~-sdL~--------~~~~vG~~~~~Ir~lF~~A~~~aP~ILfI 554 (979)
...+|++||+|+||||+++++++.... .++.+.- .++. ...-+|.......+.+..+....|.+|++
T Consensus 122 ~g~ili~G~tGSGKTT~l~al~~~i~~~~~~~i~tiEdp~E~~~~~~~~~i~q~evg~~~~~~~~~l~~~lr~~pd~i~v 201 (343)
T TIGR01420 122 RGLILVTGPTGSGKSTTLASMIDYINKNAAGHIITIEDPIEYVHRNKRSLINQREVGLDTLSFANALRAALREDPDVILI 201 (343)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHhhCcCCCCEEEEEcCChhhhccCccceEEccccCCCCcCHHHHHHHhhccCCCEEEE
Confidence 345899999999999999999987642 3333321 1211 00112322334566677777789999999
Q ss_pred cCcc
Q 035561 555 EDFD 558 (979)
Q Consensus 555 DEID 558 (979)
||+-
T Consensus 202 gEir 205 (343)
T TIGR01420 202 GEMR 205 (343)
T ss_pred eCCC
Confidence 9983
No 329
>COG5245 DYN1 Dynein, heavy chain [Cytoskeleton]
Probab=96.86 E-value=0.011 Score=75.85 Aligned_cols=183 Identities=15% Similarity=0.154 Sum_probs=106.7
Q ss_pred CCCCCceeEecCCCCCChHHH-HHHHHHHcCCCEEEeechhhhhhhhcccchhhHHHHHHHHHhc---------------
Q 035561 484 GARAPRGVLIVGERGTGKTSL-ALAIAAEARVPVVNVEAQELEAGLWVGQSASNVRELFQTARDL--------------- 547 (979)
Q Consensus 484 G~~~P~gVLL~GPPGTGKTtL-ArAlA~elg~~~i~Is~sdL~~~~~vG~~~~~Ir~lF~~A~~~--------------- 547 (979)
.+...++++++||||+|||++ .-++-++.-..++.+|.+.-.. +...++. .++-...
T Consensus 1490 ~lnt~R~~i~cGppGSgK~mlM~~sLrs~~~~ev~~~Nfs~~t~------T~s~ls~-Ler~t~yy~~tg~~~l~PK~~v 1562 (3164)
T COG5245 1490 ALNTLRSYIYCGPPGSGKEMLMCPSLRSELITEVKYFNFSTCTM------TPSKLSV-LERETEYYPNTGVVRLYPKPVV 1562 (3164)
T ss_pred HHhccceEEEECCCCCccchhcchhhhhhhheeeeEEeeccccC------CHHHHHH-HHhhceeeccCCeEEEccCcch
Confidence 345668999999999999995 6688888888898888765431 2222322 2221110
Q ss_pred CCeEEEEcCccccccccccccCCCchhhHHHHHHHHhhhccc--------ccCCeEEEEecccchhhc-----hhhhhcC
Q 035561 548 APVIIFVEDFDLFAGVRGQFIHTKQQDHESFINQLLVELDGF--------EKQDGVVLMATTRNIKQI-----DEALQRP 614 (979)
Q Consensus 548 aP~ILfIDEIDaL~~~r~~~~~~~~~~~~~iln~LL~~LDg~--------~~~~~ViVIATTN~pe~L-----DpALlRp 614 (979)
...|||.|||. | +..... ..+..--.+.+|+ +-+|| ..-.++++.|+||.+.+. +..+.|.
T Consensus 1563 K~lVLFcDeIn-L-p~~~~y---~~~~vI~FlR~l~-e~QGfw~s~~~~wvTI~~i~l~Gacnp~td~gRv~~~eRf~r~ 1636 (3164)
T COG5245 1563 KDLVLFCDEIN-L-PYGFEY---YPPTVIVFLRPLV-ERQGFWSSIAVSWVTICGIILYGACNPGTDEGRVKYYERFIRK 1636 (3164)
T ss_pred hheEEEeeccC-C-cccccc---CCCceEEeeHHHH-HhcccccchhhhHhhhcceEEEccCCCCCCcccCccHHHHhcC
Confidence 12699999998 4 322111 1111111222332 11333 223579999999997653 2333331
Q ss_pred CceeeEeccCCCCHHHHHHHHHHHHHhccchh----------hhhhhhHHHH--------HHHcCCCCHHHHHHHHHHHh
Q 035561 615 GRMDRIFNLQKPTQSEREKILRIAAQETMDEE----------LIDLVDWRKV--------AEKTALLRPIELKLVPVALE 676 (979)
Q Consensus 615 gRFd~~I~~~~Pd~eeR~~IL~~~l~~~~~~~----------l~~dvdL~~L--------A~~T~GfsgaDL~~Lv~aa~ 676 (979)
...+++..|.......|.+.++....... ....+.+-.. -+.--||+|.||-..+++.-
T Consensus 1637 ---~v~vf~~ype~~SL~~Iyea~l~~s~l~~~ef~~~se~~~~aSv~ly~~~k~~~k~~lq~~y~y~pReLtR~lr~i~ 1713 (3164)
T COG5245 1637 ---PVFVFCCYPELASLRNIYEAVLMGSYLCFDEFNRLSEETMSASVELYLSSKDKTKFFLQMNYGYKPRELTRSLRAIF 1713 (3164)
T ss_pred ---ceEEEecCcchhhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccccChHHHHHHHHHHH
Confidence 14688999999999999998877542100 0001111111 11224899999998888777
Q ss_pred hhhhcc
Q 035561 677 GSAFRS 682 (979)
Q Consensus 677 ~aa~r~ 682 (979)
.++-.+
T Consensus 1714 ~yaeT~ 1719 (3164)
T COG5245 1714 GYAETR 1719 (3164)
T ss_pred hHHhcC
Confidence 655443
No 330
>PRK14532 adenylate kinase; Provisional
Probab=96.86 E-value=0.00087 Score=69.28 Aligned_cols=34 Identities=15% Similarity=0.296 Sum_probs=28.5
Q ss_pred eeEecCCCCCChHHHHHHHHHHcCCCEEEeechhhh
Q 035561 490 GVLIVGERGTGKTSLALAIAAEARVPVVNVEAQELE 525 (979)
Q Consensus 490 gVLL~GPPGTGKTtLArAlA~elg~~~i~Is~sdL~ 525 (979)
.++|.|||||||||+|+.+|+.+|.+++ +..+++
T Consensus 2 ~i~~~G~pGsGKsT~a~~la~~~g~~~i--s~~d~l 35 (188)
T PRK14532 2 NLILFGPPAAGKGTQAKRLVEERGMVQL--STGDML 35 (188)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcCCeEE--eCcHHH
Confidence 4899999999999999999999987664 555554
No 331
>PRK04841 transcriptional regulator MalT; Provisional
Probab=96.86 E-value=0.018 Score=73.17 Aligned_cols=152 Identities=16% Similarity=0.266 Sum_probs=82.6
Q ss_pred ceeEecCCCCCChHHHHHHHHHHcCCCEEEeech--hhhhhhh------------ccc---c------------hhhHHH
Q 035561 489 RGVLIVGERGTGKTSLALAIAAEARVPVVNVEAQ--ELEAGLW------------VGQ---S------------ASNVRE 539 (979)
Q Consensus 489 ~gVLL~GPPGTGKTtLArAlA~elg~~~i~Is~s--dL~~~~~------------vG~---~------------~~~Ir~ 539 (979)
+-++++||+|.||||++...+...+ ++..++.. +-....| .+. . ...+..
T Consensus 33 ~~~~v~apaG~GKTtl~~~~~~~~~-~~~w~~l~~~d~~~~~f~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 111 (903)
T PRK04841 33 RLVLVTSPAGYGKTTLISQWAAGKN-NLGWYSLDESDNQPERFASYLIAALQQATNGHCSKSEALAQKRQYASLSSLFAQ 111 (903)
T ss_pred CeEEEECCCCCCHHHHHHHHHHhCC-CeEEEecCcccCCHHHHHHHHHHHHHHhcCcccchhhhhhccCCcCCHHHHHHH
Confidence 4589999999999999999887776 66555442 2000000 000 0 011222
Q ss_pred HHHHHHh-cCCeEEEEcCccccccccccccCCCchhhHHHHHHHHhhhcccccCCeEEEEecccchhhch-hhhhcCCce
Q 035561 540 LFQTARD-LAPVIIFVEDFDLFAGVRGQFIHTKQQDHESFINQLLVELDGFEKQDGVVLMATTRNIKQID-EALQRPGRM 617 (979)
Q Consensus 540 lF~~A~~-~aP~ILfIDEIDaL~~~r~~~~~~~~~~~~~iln~LL~~LDg~~~~~~ViVIATTN~pe~LD-pALlRpgRF 617 (979)
++..... ..|.+|+|||++.+- +......+..|+..+ .....+|| |+.....++ ..++..+
T Consensus 112 ~~~~l~~~~~~~~lvlDD~h~~~----------~~~~~~~l~~l~~~~----~~~~~lv~-~sR~~~~~~~~~l~~~~-- 174 (903)
T PRK04841 112 LFIELADWHQPLYLVIDDYHLIT----------NPEIHEAMRFFLRHQ----PENLTLVV-LSRNLPPLGIANLRVRD-- 174 (903)
T ss_pred HHHHHhcCCCCEEEEEeCcCcCC----------ChHHHHHHHHHHHhC----CCCeEEEE-EeCCCCCCchHhHHhcC--
Confidence 3333332 569999999999762 122344555555332 22334444 554421221 1221111
Q ss_pred eeEeccC----CCCHHHHHHHHHHHHHhccchhhhhhhhHHHHHHHcCCCC
Q 035561 618 DRIFNLQ----KPTQSEREKILRIAAQETMDEELIDLVDWRKVAEKTALLR 664 (979)
Q Consensus 618 d~~I~~~----~Pd~eeR~~IL~~~l~~~~~~~l~~dvdL~~LA~~T~Gfs 664 (979)
..+.+. ..+.++-.+++...+... .+..+...|.+.|.|..
T Consensus 175 -~~~~l~~~~l~f~~~e~~~ll~~~~~~~-----~~~~~~~~l~~~t~Gwp 219 (903)
T PRK04841 175 -QLLEIGSQQLAFDHQEAQQFFDQRLSSP-----IEAAESSRLCDDVEGWA 219 (903)
T ss_pred -cceecCHHhCCCCHHHHHHHHHhccCCC-----CCHHHHHHHHHHhCChH
Confidence 233444 668888888887655432 23345677788888854
No 332
>PRK04296 thymidine kinase; Provisional
Probab=96.82 E-value=0.0041 Score=65.11 Aligned_cols=70 Identities=16% Similarity=0.207 Sum_probs=41.8
Q ss_pred eeEecCCCCCChHHHHHHHHHHc---CCCEEEeech-h---h---hhhhhcccc-----hhhHHHHHHHHH--hcCCeEE
Q 035561 490 GVLIVGERGTGKTSLALAIAAEA---RVPVVNVEAQ-E---L---EAGLWVGQS-----ASNVRELFQTAR--DLAPVII 552 (979)
Q Consensus 490 gVLL~GPPGTGKTtLArAlA~el---g~~~i~Is~s-d---L---~~~~~vG~~-----~~~Ir~lF~~A~--~~aP~IL 552 (979)
-.+++||||+||||++..++..+ +..++.+..+ + . ..+. .|.. .....+++..+. ...+.+|
T Consensus 4 i~litG~~GsGKTT~~l~~~~~~~~~g~~v~i~k~~~d~~~~~~~i~~~-lg~~~~~~~~~~~~~~~~~~~~~~~~~dvv 82 (190)
T PRK04296 4 LEFIYGAMNSGKSTELLQRAYNYEERGMKVLVFKPAIDDRYGEGKVVSR-IGLSREAIPVSSDTDIFELIEEEGEKIDCV 82 (190)
T ss_pred EEEEECCCCCHHHHHHHHHHHHHHHcCCeEEEEeccccccccCCcEecC-CCCcccceEeCChHHHHHHHHhhCCCCCEE
Confidence 37899999999999998888765 5565555331 1 0 0011 1211 112344444443 2456899
Q ss_pred EEcCcccc
Q 035561 553 FVEDFDLF 560 (979)
Q Consensus 553 fIDEIDaL 560 (979)
+|||+..+
T Consensus 83 iIDEaq~l 90 (190)
T PRK04296 83 LIDEAQFL 90 (190)
T ss_pred EEEccccC
Confidence 99999654
No 333
>COG0563 Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism]
Probab=96.82 E-value=0.006 Score=63.56 Aligned_cols=34 Identities=26% Similarity=0.513 Sum_probs=27.5
Q ss_pred eeEecCCCCCChHHHHHHHHHHcCCCEEEeechhhh
Q 035561 490 GVLIVGERGTGKTSLALAIAAEARVPVVNVEAQELE 525 (979)
Q Consensus 490 gVLL~GPPGTGKTtLArAlA~elg~~~i~Is~sdL~ 525 (979)
.|+|.||||+||||+|+.||+.+ ++..++..++.
T Consensus 2 riiilG~pGaGK~T~A~~La~~~--~i~hlstgd~~ 35 (178)
T COG0563 2 RILILGPPGAGKSTLAKKLAKKL--GLPHLDTGDIL 35 (178)
T ss_pred eEEEECCCCCCHHHHHHHHHHHh--CCcEEcHhHHh
Confidence 48999999999999999999995 45556655554
No 334
>COG4650 RtcR Sigma54-dependent transcription regulator containing an AAA-type ATPase domain and a DNA-binding domain [Transcription / Signal transduction mechanisms]
Probab=96.82 E-value=0.00088 Score=73.60 Aligned_cols=76 Identities=22% Similarity=0.322 Sum_probs=50.8
Q ss_pred CCCceeEecCCCCCChHHHHHHHHH------HcCCCEEEeechhhhhhhhcccchhhHHHHHHHHH--------hcCCeE
Q 035561 486 RAPRGVLIVGERGTGKTSLALAIAA------EARVPVVNVEAQELEAGLWVGQSASNVRELFQTAR--------DLAPVI 551 (979)
Q Consensus 486 ~~P~gVLL~GPPGTGKTtLArAlA~------elg~~~i~Is~sdL~~~~~vG~~~~~Ir~lF~~A~--------~~aP~I 551 (979)
+....+||.||.|.|||.||+.|-. .+.-+|+++||..+-...-....-..++..|.-|+ ....+.
T Consensus 206 rsr~p~ll~gptgagksflarriyelk~arhq~sg~fvevncatlrgd~amsalfghvkgaftga~~~r~gllrsadggm 285 (531)
T COG4650 206 RSRAPILLNGPTGAGKSFLARRIYELKQARHQFSGAFVEVNCATLRGDTAMSALFGHVKGAFTGARESREGLLRSADGGM 285 (531)
T ss_pred hccCCeEeecCCCcchhHHHHHHHHHHHHHHhcCCceEEEeeeeecCchHHHHHHhhhccccccchhhhhhhhccCCCce
Confidence 3444599999999999999998865 45779999999876422111111122333343332 234689
Q ss_pred EEEcCccccc
Q 035561 552 IFVEDFDLFA 561 (979)
Q Consensus 552 LfIDEIDaL~ 561 (979)
||+|||..|+
T Consensus 286 lfldeigelg 295 (531)
T COG4650 286 LFLDEIGELG 295 (531)
T ss_pred EehHhhhhcC
Confidence 9999999885
No 335
>PF13604 AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL_A 3E1S_A 3GP8_A.
Probab=96.81 E-value=0.0025 Score=67.08 Aligned_cols=100 Identities=18% Similarity=0.265 Sum_probs=54.2
Q ss_pred ceeEecCCCCCChHHHHHHHHHHc---CCCEEEeechhhhhh---hhcccchhhHHHHHHHHHh---------cCCeEEE
Q 035561 489 RGVLIVGERGTGKTSLALAIAAEA---RVPVVNVEAQELEAG---LWVGQSASNVRELFQTARD---------LAPVIIF 553 (979)
Q Consensus 489 ~gVLL~GPPGTGKTtLArAlA~el---g~~~i~Is~sdL~~~---~~vG~~~~~Ir~lF~~A~~---------~aP~ILf 553 (979)
+.+++.||||||||++++.++..+ +..++.+..+.-... .-.|.....+..++..... ....+|+
T Consensus 19 ~~~~l~G~aGtGKT~~l~~~~~~~~~~g~~v~~~apT~~Aa~~L~~~~~~~a~Ti~~~l~~~~~~~~~~~~~~~~~~vli 98 (196)
T PF13604_consen 19 RVSVLQGPAGTGKTTLLKALAEALEAAGKRVIGLAPTNKAAKELREKTGIEAQTIHSFLYRIPNGDDEGRPELPKKDVLI 98 (196)
T ss_dssp SEEEEEESTTSTHHHHHHHHHHHHHHTT--EEEEESSHHHHHHHHHHHTS-EEEHHHHTTEECCEECCSSCC-TSTSEEE
T ss_pred eEEEEEECCCCCHHHHHHHHHHHHHhCCCeEEEECCcHHHHHHHHHhhCcchhhHHHHHhcCCcccccccccCCcccEEE
Confidence 457889999999999999987655 566666655322111 1112223334333332221 2347999
Q ss_pred EcCccccccccccccCCCchhhHHHHHHHHhhhcccccCCeEEEEecccch
Q 035561 554 VEDFDLFAGVRGQFIHTKQQDHESFINQLLVELDGFEKQDGVVLMATTRNI 604 (979)
Q Consensus 554 IDEIDaL~~~r~~~~~~~~~~~~~iln~LL~~LDg~~~~~~ViVIATTN~p 604 (979)
|||+.-+ ....+..|+..+.. .+..+++++=.+..
T Consensus 99 VDEasmv--------------~~~~~~~ll~~~~~--~~~klilvGD~~QL 133 (196)
T PF13604_consen 99 VDEASMV--------------DSRQLARLLRLAKK--SGAKLILVGDPNQL 133 (196)
T ss_dssp ESSGGG---------------BHHHHHHHHHHS-T---T-EEEEEE-TTSH
T ss_pred Eeccccc--------------CHHHHHHHHHHHHh--cCCEEEEECCcchh
Confidence 9998655 23345555555443 24567777776653
No 336
>PRK13946 shikimate kinase; Provisional
Probab=96.80 E-value=0.0022 Score=66.60 Aligned_cols=35 Identities=26% Similarity=0.525 Sum_probs=31.4
Q ss_pred CCceeEecCCCCCChHHHHHHHHHHcCCCEEEeec
Q 035561 487 APRGVLIVGERGTGKTSLALAIAAEARVPVVNVEA 521 (979)
Q Consensus 487 ~P~gVLL~GPPGTGKTtLArAlA~elg~~~i~Is~ 521 (979)
.++.|+|.|+||||||++++.+|+.+|.+|+..+.
T Consensus 9 ~~~~I~l~G~~GsGKsti~~~LA~~Lg~~~id~D~ 43 (184)
T PRK13946 9 GKRTVVLVGLMGAGKSTVGRRLATMLGLPFLDADT 43 (184)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHcCCCeECcCH
Confidence 35679999999999999999999999999987664
No 337
>COG0703 AroK Shikimate kinase [Amino acid transport and metabolism]
Probab=96.80 E-value=0.0011 Score=68.46 Aligned_cols=33 Identities=21% Similarity=0.558 Sum_probs=29.9
Q ss_pred ceeEecCCCCCChHHHHHHHHHHcCCCEEEeec
Q 035561 489 RGVLIVGERGTGKTSLALAIAAEARVPVVNVEA 521 (979)
Q Consensus 489 ~gVLL~GPPGTGKTtLArAlA~elg~~~i~Is~ 521 (979)
.++.|.|++|+||||+.+++|+.++.+|+-.+.
T Consensus 3 ~~IvLiG~mGaGKSTIGr~LAk~L~~~F~D~D~ 35 (172)
T COG0703 3 MNIVLIGFMGAGKSTIGRALAKALNLPFIDTDQ 35 (172)
T ss_pred ccEEEEcCCCCCHhHHHHHHHHHcCCCcccchH
Confidence 469999999999999999999999999986653
No 338
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=96.79 E-value=0.021 Score=66.82 Aligned_cols=115 Identities=14% Similarity=0.242 Sum_probs=62.6
Q ss_pred CCCceeEecCCCCCChHHHHHHHHHHc----CCCEEEeechhhhh------hhh---cc---cchhhHHHHHHHHHhcCC
Q 035561 486 RAPRGVLIVGERGTGKTSLALAIAAEA----RVPVVNVEAQELEA------GLW---VG---QSASNVRELFQTARDLAP 549 (979)
Q Consensus 486 ~~P~gVLL~GPPGTGKTtLArAlA~el----g~~~i~Is~sdL~~------~~~---vG---~~~~~Ir~lF~~A~~~aP 549 (979)
..+.-+++.||+|+||||++..+|..+ |..+..+++...-. ..| .| .....+..+.+.+.....
T Consensus 221 ~~~~vi~lvGptGvGKTTtaaKLA~~~~~~~G~~V~Lit~Dt~R~aA~eQLk~yAe~lgvp~~~~~~~~~l~~~l~~~~~ 300 (432)
T PRK12724 221 NQRKVVFFVGPTGSGKTTSIAKLAAKYFLHMGKSVSLYTTDNYRIAAIEQLKRYADTMGMPFYPVKDIKKFKETLARDGS 300 (432)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHHhcCCeEEEecccchhhhHHHHHHHHHHhcCCCeeehHHHHHHHHHHHhCCC
Confidence 345668899999999999999999754 33444444432110 001 11 111223344444444456
Q ss_pred eEEEEcCccccccccccccCCCchhhHHHHHHHHhhhccc---ccCCeEEEEecccchhhchhhhh
Q 035561 550 VIIFVEDFDLFAGVRGQFIHTKQQDHESFINQLLVELDGF---EKQDGVVLMATTRNIKQIDEALQ 612 (979)
Q Consensus 550 ~ILfIDEIDaL~~~r~~~~~~~~~~~~~iln~LL~~LDg~---~~~~~ViVIATTN~pe~LDpALl 612 (979)
.+|+||=.... ......+..|...++.+ .....++|+.+|...+.+...+.
T Consensus 301 D~VLIDTaGr~------------~rd~~~l~eL~~~~~~~~~~~~~e~~LVLsAt~~~~~~~~~~~ 354 (432)
T PRK12724 301 ELILIDTAGYS------------HRNLEQLERMQSFYSCFGEKDSVENLLVLSSTSSYHHTLTVLK 354 (432)
T ss_pred CEEEEeCCCCC------------ccCHHHHHHHHHHHHhhcCCCCCeEEEEEeCCCCHHHHHHHHH
Confidence 78888853211 11123344444433332 23356788888888777766553
No 339
>PRK14531 adenylate kinase; Provisional
Probab=96.79 E-value=0.0012 Score=68.32 Aligned_cols=35 Identities=23% Similarity=0.379 Sum_probs=29.2
Q ss_pred ceeEecCCCCCChHHHHHHHHHHcCCCEEEeechhhh
Q 035561 489 RGVLIVGERGTGKTSLALAIAAEARVPVVNVEAQELE 525 (979)
Q Consensus 489 ~gVLL~GPPGTGKTtLArAlA~elg~~~i~Is~sdL~ 525 (979)
..++++|||||||||+++.+|..+|.+.++ +.+++
T Consensus 3 ~~i~i~G~pGsGKsT~~~~la~~~g~~~is--~gd~l 37 (183)
T PRK14531 3 QRLLFLGPPGAGKGTQAARLCAAHGLRHLS--TGDLL 37 (183)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhCCCeEe--cccHH
Confidence 459999999999999999999999987654 44444
No 340
>KOG3347 consensus Predicted nucleotide kinase/nuclear protein involved oxidative stress response [Nucleotide transport and metabolism]
Probab=96.77 E-value=0.001 Score=67.14 Aligned_cols=34 Identities=29% Similarity=0.583 Sum_probs=29.4
Q ss_pred eeEecCCCCCChHHHHHHHHHHcCCCEEEeechhhh
Q 035561 490 GVLIVGERGTGKTSLALAIAAEARVPVVNVEAQELE 525 (979)
Q Consensus 490 gVLL~GPPGTGKTtLArAlA~elg~~~i~Is~sdL~ 525 (979)
+||++|-|||||||++..+|...+.+.+.+ ++++
T Consensus 9 NILvtGTPG~GKstl~~~lae~~~~~~i~i--sd~v 42 (176)
T KOG3347|consen 9 NILVTGTPGTGKSTLAERLAEKTGLEYIEI--SDLV 42 (176)
T ss_pred CEEEeCCCCCCchhHHHHHHHHhCCceEeh--hhHH
Confidence 599999999999999999999999887654 4554
No 341
>cd02020 CMPK Cytidine monophosphate kinase (CMPK) catalyzes the reversible phosphorylation of cytidine monophosphate (CMP) to produce cytidine diphosphate (CDP), using ATP as the preferred phosphoryl donor.
Probab=96.77 E-value=0.0011 Score=64.87 Aligned_cols=30 Identities=27% Similarity=0.507 Sum_probs=27.9
Q ss_pred eEecCCCCCChHHHHHHHHHHcCCCEEEee
Q 035561 491 VLIVGERGTGKTSLALAIAAEARVPVVNVE 520 (979)
Q Consensus 491 VLL~GPPGTGKTtLArAlA~elg~~~i~Is 520 (979)
|.+.|+||||||++|+.+|..++.|++..+
T Consensus 2 I~i~G~~GsGKst~a~~la~~~~~~~~~~~ 31 (147)
T cd02020 2 IAIDGPAGSGKSTVAKLLAKKLGLPYLDTG 31 (147)
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCceeccc
Confidence 689999999999999999999999998766
No 342
>PRK05800 cobU adenosylcobinamide kinase/adenosylcobinamide-phosphate guanylyltransferase; Validated
Probab=96.76 E-value=0.0042 Score=64.22 Aligned_cols=34 Identities=24% Similarity=0.429 Sum_probs=29.6
Q ss_pred eeEecCCCCCChHHHHHHHHHHcCCCEEEeechh
Q 035561 490 GVLIVGERGTGKTSLALAIAAEARVPVVNVEAQE 523 (979)
Q Consensus 490 gVLL~GPPGTGKTtLArAlA~elg~~~i~Is~sd 523 (979)
-+|+.|+||||||++|..++..++.+++++....
T Consensus 3 ~ili~G~~~sGKS~~a~~l~~~~~~~~~~iat~~ 36 (170)
T PRK05800 3 LILVTGGARSGKSRFAERLAAQSGLQVLYIATAQ 36 (170)
T ss_pred EEEEECCCCccHHHHHHHHHHHcCCCcEeCcCCC
Confidence 3899999999999999999999988887776543
No 343
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=96.76 E-value=0.01 Score=60.58 Aligned_cols=33 Identities=36% Similarity=0.447 Sum_probs=27.4
Q ss_pred eEecCCCCCChHHHHHHHHHHc---CCCEEEeechh
Q 035561 491 VLIVGERGTGKTSLALAIAAEA---RVPVVNVEAQE 523 (979)
Q Consensus 491 VLL~GPPGTGKTtLArAlA~el---g~~~i~Is~sd 523 (979)
++++||||+|||++++.+|..+ +..+..+++..
T Consensus 3 ~~~~G~~G~GKTt~~~~la~~~~~~g~~v~~i~~D~ 38 (173)
T cd03115 3 ILLVGLQGVGKTTTAAKLALYLKKKGKKVLLVAADT 38 (173)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHCCCcEEEEEcCC
Confidence 6889999999999999998875 66777777653
No 344
>PRK06217 hypothetical protein; Validated
Probab=96.75 E-value=0.0012 Score=68.31 Aligned_cols=31 Identities=29% Similarity=0.588 Sum_probs=28.1
Q ss_pred eeEecCCCCCChHHHHHHHHHHcCCCEEEee
Q 035561 490 GVLIVGERGTGKTSLALAIAAEARVPVVNVE 520 (979)
Q Consensus 490 gVLL~GPPGTGKTtLArAlA~elg~~~i~Is 520 (979)
.|+|.|+||+||||+|+++++.++.+++..+
T Consensus 3 ~I~i~G~~GsGKSTla~~L~~~l~~~~~~~D 33 (183)
T PRK06217 3 RIHITGASGSGTTTLGAALAERLDIPHLDTD 33 (183)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcCCcEEEcC
Confidence 4899999999999999999999999977655
No 345
>TIGR02688 conserved hypothetical protein TIGR02688. Members of this family are uncharacterized proteins sporadically distributed in bacteria and archaea, about 470 amino acids in length. Several members of this family appear in public databases with annotation as ATP-dependent protease La, despite the lack of similarity to families TIGR00763 (ATP-dependent protease La) or pfam02190 (ATP-dependent protease La (LON) domain). This protein is repeatedly found downstream of another uncharacterized protein of about 880 amino acids in length, described by model TIGR02687.
Probab=96.75 E-value=0.0024 Score=74.32 Aligned_cols=60 Identities=10% Similarity=0.131 Sum_probs=39.2
Q ss_pred CceeEecCCCCCChHHHHHHHHHHc----CCCEEEeechhhhhhhhcccchhhHHHHHHHHHhcCCeEEEEcCcccc
Q 035561 488 PRGVLIVGERGTGKTSLALAIAAEA----RVPVVNVEAQELEAGLWVGQSASNVRELFQTARDLAPVIIFVEDFDLF 560 (979)
Q Consensus 488 P~gVLL~GPPGTGKTtLArAlA~el----g~~~i~Is~sdL~~~~~vG~~~~~Ir~lF~~A~~~aP~ILfIDEIDaL 560 (979)
..++++.||||||||+++.+++... | -.++..+|+... .. ..+.. -....+|+|||+..+
T Consensus 209 ~~Nli~lGp~GTGKThla~~l~~~~a~~sG---~f~T~a~Lf~~L-----~~---~~lg~--v~~~DlLI~DEvgyl 272 (449)
T TIGR02688 209 NYNLIELGPKGTGKSYIYNNLSPYVILISG---GTITVAKLFYNI-----ST---RQIGL--VGRWDVVAFDEVATL 272 (449)
T ss_pred CCcEEEECCCCCCHHHHHHHHhHHHHHHcC---CcCcHHHHHHHH-----HH---HHHhh--hccCCEEEEEcCCCC
Confidence 4579999999999999999988772 3 334444554221 11 11111 124689999999865
No 346
>PF04665 Pox_A32: Poxvirus A32 protein; InterPro: IPR006758 This entry contains uncharacterised proteins belonging to the B354L family which include the pox virus A32 protein. This is thought to be an ATPase involved in viral DNA packaging [].
Probab=96.75 E-value=0.011 Score=64.62 Aligned_cols=134 Identities=13% Similarity=0.281 Sum_probs=77.5
Q ss_pred CCCceeEecCCCCCChHHHHHHHHHHcCC---CEEEeechhhhhh--hh-----ccc--c----hh-------hHHHHHH
Q 035561 486 RAPRGVLIVGERGTGKTSLALAIAAEARV---PVVNVEAQELEAG--LW-----VGQ--S----AS-------NVRELFQ 542 (979)
Q Consensus 486 ~~P~gVLL~GPPGTGKTtLArAlA~elg~---~~i~Is~sdL~~~--~~-----vG~--~----~~-------~Ir~lF~ 542 (979)
+.|-.+.+.|++|||||++++.+...+.. +++.+.. ..... .| +.. . +. .+.+...
T Consensus 11 ~~~fr~viIG~sGSGKT~li~~lL~~~~~~f~~I~l~t~-~~n~~~~~~i~p~~i~~~~~~e~le~~l~~~k~~I~k~~~ 89 (241)
T PF04665_consen 11 KDPFRMVIIGKSGSGKTTLIKSLLYYLRHKFDHIFLITP-EYNNEYYKYIWPDHIFKVFDKEELEYILIRQKEKIEKYIK 89 (241)
T ss_pred CCCceEEEECCCCCCHHHHHHHHHHhhcccCCEEEEEec-CCchhhhhhcchhhccccccHHHHHHHHHHHHHHHHHHhh
Confidence 45667999999999999999999887643 2222221 11000 01 000 0 00 1111111
Q ss_pred HHHh---cCCeEEEEcCccccccccccccCCCchhhHHHHHHHHhhhcccccCCeEEEEecccchhhchhhhhcCCceee
Q 035561 543 TARD---LAPVIIFVEDFDLFAGVRGQFIHTKQQDHESFINQLLVELDGFEKQDGVVLMATTRNIKQIDEALQRPGRMDR 619 (979)
Q Consensus 543 ~A~~---~aP~ILfIDEIDaL~~~r~~~~~~~~~~~~~iln~LL~~LDg~~~~~~ViVIATTN~pe~LDpALlRpgRFd~ 619 (979)
.... ..+++|++|++.. .......+.+++.. .+.-++.+|-++...-.|||.++. -.+.
T Consensus 90 k~~~~k~~~~~LiIlDD~~~------------~~~k~~~l~~~~~~----gRH~~is~i~l~Q~~~~lp~~iR~--n~~y 151 (241)
T PF04665_consen 90 KSPQKKNNPRFLIILDDLGD------------KKLKSKILRQFFNN----GRHYNISIIFLSQSYFHLPPNIRS--NIDY 151 (241)
T ss_pred hhcccCCCCCeEEEEeCCCC------------chhhhHHHHHHHhc----ccccceEEEEEeeecccCCHHHhh--cceE
Confidence 1111 2368999999732 01123345555532 344567888888888999999977 6777
Q ss_pred EeccCCCCHHHHHHHHHHHH
Q 035561 620 IFNLQKPTQSEREKILRIAA 639 (979)
Q Consensus 620 ~I~~~~Pd~eeR~~IL~~~l 639 (979)
.+-++ -+..+..-|++.+.
T Consensus 152 ~i~~~-~s~~dl~~i~~~~~ 170 (241)
T PF04665_consen 152 FIIFN-NSKRDLENIYRNMN 170 (241)
T ss_pred EEEec-CcHHHHHHHHHhcc
Confidence 77665 56777777777654
No 347
>cd00046 DEXDc DEAD-like helicases superfamily. A diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region.
Probab=96.74 E-value=0.0062 Score=57.26 Aligned_cols=25 Identities=40% Similarity=0.438 Sum_probs=21.1
Q ss_pred ceeEecCCCCCChHHHHHHHHHHcC
Q 035561 489 RGVLIVGERGTGKTSLALAIAAEAR 513 (979)
Q Consensus 489 ~gVLL~GPPGTGKTtLArAlA~elg 513 (979)
++++++||+|+|||+++-.++..+.
T Consensus 1 ~~~~i~~~~G~GKT~~~~~~~~~~~ 25 (144)
T cd00046 1 RDVLLAAPTGSGKTLAALLPILELL 25 (144)
T ss_pred CCEEEECCCCCchhHHHHHHHHHHH
Confidence 3689999999999998888877663
No 348
>PRK13948 shikimate kinase; Provisional
Probab=96.73 E-value=0.0016 Score=68.15 Aligned_cols=35 Identities=20% Similarity=0.355 Sum_probs=31.8
Q ss_pred CCCceeEecCCCCCChHHHHHHHHHHcCCCEEEee
Q 035561 486 RAPRGVLIVGERGTGKTSLALAIAAEARVPVVNVE 520 (979)
Q Consensus 486 ~~P~gVLL~GPPGTGKTtLArAlA~elg~~~i~Is 520 (979)
+.|..|+|.|.+||||||+++.+|+.++.+|+..+
T Consensus 8 ~~~~~I~LiG~~GsGKSTvg~~La~~lg~~~iD~D 42 (182)
T PRK13948 8 RPVTWVALAGFMGTGKSRIGWELSRALMLHFIDTD 42 (182)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHcCCCEEECC
Confidence 45688999999999999999999999999998655
No 349
>cd03281 ABC_MSH5_euk MutS5 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=96.73 E-value=0.0086 Score=63.98 Aligned_cols=23 Identities=26% Similarity=0.432 Sum_probs=20.7
Q ss_pred CceeEecCCCCCChHHHHHHHHH
Q 035561 488 PRGVLIVGERGTGKTSLALAIAA 510 (979)
Q Consensus 488 P~gVLL~GPPGTGKTtLArAlA~ 510 (979)
++.++|+||.|+|||++.|.++.
T Consensus 29 ~~~~~itGpNg~GKStlLk~i~~ 51 (213)
T cd03281 29 PSIMVITGPNSSGKSVYLKQVAL 51 (213)
T ss_pred ceEEEEECCCCCChHHHHHHHHH
Confidence 36799999999999999999984
No 350
>COG3284 AcoR Transcriptional activator of acetoin/glycerol metabolism [Secondary metabolites biosynthesis, transport, and catabolism / Transcription]
Probab=96.73 E-value=0.0026 Score=76.39 Aligned_cols=166 Identities=25% Similarity=0.243 Sum_probs=90.5
Q ss_pred eeEecCCCCCChHHHHHHHHHHcC--CCEEEeechhhh----hhhhcccch--------hhHHHHHHHHHhcCCeEEEEc
Q 035561 490 GVLIVGERGTGKTSLALAIAAEAR--VPVVNVEAQELE----AGLWVGQSA--------SNVRELFQTARDLAPVIIFVE 555 (979)
Q Consensus 490 gVLL~GPPGTGKTtLArAlA~elg--~~~i~Is~sdL~----~~~~vG~~~--------~~Ir~lF~~A~~~aP~ILfID 555 (979)
.+|+.|.|||||-.+||++....+ -||+.+||..+- .+.+.|... +..+..++.|. .+.||+|
T Consensus 338 pvll~GEtGtGKe~laraiH~~s~~~gpfvAvNCaAip~~liesELFGy~~GafTga~~kG~~g~~~~A~---gGtlFld 414 (606)
T COG3284 338 PVLLQGETGTGKEVLARAIHQNSEAAGPFVAVNCAAIPEALIESELFGYVAGAFTGARRKGYKGKLEQAD---GGTLFLD 414 (606)
T ss_pred CeEecCCcchhHHHHHHHHHhcccccCCeEEEEeccchHHhhhHHHhccCccccccchhccccccceecC---CCccHHH
Confidence 499999999999999999987664 699999996542 222233222 22223333332 3899999
Q ss_pred CccccccccccccCCCchhhHHHHHHHHhhhcc--------cccCCeEEEEecccchhhchhhhhcCCceee-------E
Q 035561 556 DFDLFAGVRGQFIHTKQQDHESFINQLLVELDG--------FEKQDGVVLMATTRNIKQIDEALQRPGRMDR-------I 620 (979)
Q Consensus 556 EIDaL~~~r~~~~~~~~~~~~~iln~LL~~LDg--------~~~~~~ViVIATTN~pe~LDpALlRpgRFd~-------~ 620 (979)
||..+. ...-..||..|.. -...-.|-||+||+++= ..|.+-|||-+ .
T Consensus 415 eIgd~p--------------~~~Qs~LLrVl~e~~v~p~g~~~~~vdirvi~ath~dl---~~lv~~g~fredLyyrL~~ 477 (606)
T COG3284 415 EIGDMP--------------LALQSRLLRVLQEGVVTPLGGTRIKVDIRVIAATHRDL---AQLVEQGRFREDLYYRLNA 477 (606)
T ss_pred Hhhhch--------------HHHHHHHHHHHhhCceeccCCcceeEEEEEEeccCcCH---HHHHHcCCchHHHHHHhcC
Confidence 998762 2233345554432 12112477888888732 13444556543 2
Q ss_pred eccCCCCHHHH---HHHHHHHHHhccch--hhhhhhhHHHHHHHcCCCCHHHHHHHHHHHh
Q 035561 621 FNLQKPTQSER---EKILRIAAQETMDE--ELIDLVDWRKVAEKTALLRPIELKLVPVALE 676 (979)
Q Consensus 621 I~~~~Pd~eeR---~~IL~~~l~~~~~~--~l~~dvdL~~LA~~T~GfsgaDL~~Lv~aa~ 676 (979)
+.+..|...+| ...|..++++.... .+.++.--.-++-+-+| +-.+|.++.+.+.
T Consensus 478 ~~i~lP~lr~R~d~~~~l~~~~~~~~~~~~~l~~~~~~~l~~~~WPG-Nirel~~v~~~~~ 537 (606)
T COG3284 478 FVITLPPLRERSDRIPLLDRILKRENDWRLQLDDDALARLLAYRWPG-NIRELDNVIERLA 537 (606)
T ss_pred eeeccCchhcccccHHHHHHHHHHccCCCccCCHHHHHHHHhCCCCC-cHHHHHHHHHHHH
Confidence 44555555555 44555555443211 12222222233444555 3345555544433
No 351
>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=96.72 E-value=0.0042 Score=63.24 Aligned_cols=110 Identities=13% Similarity=0.160 Sum_probs=60.9
Q ss_pred CCCCceeEecCCCCCChHHHHHHHHHHcCC--CEEEeechhhhh-------hhhccc-----chhhHHHHHHHHHhcCCe
Q 035561 485 ARAPRGVLIVGERGTGKTSLALAIAAEARV--PVVNVEAQELEA-------GLWVGQ-----SASNVRELFQTARDLAPV 550 (979)
Q Consensus 485 ~~~P~gVLL~GPPGTGKTtLArAlA~elg~--~~i~Is~sdL~~-------~~~vG~-----~~~~Ir~lF~~A~~~aP~ 550 (979)
+.+...+.|.||+|+|||||.+.+++.... --+.+++.++.. ...++. +...-|-.+..|-...|.
T Consensus 23 i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~v~~~g~~~~~~~~~~~~~~~i~~~~qLS~G~~qrl~laral~~~p~ 102 (163)
T cd03216 23 VRRGEVHALLGENGAGKSTLMKILSGLYKPDSGEILVDGKEVSFASPRDARRAGIAMVYQLSVGERQMVEIARALARNAR 102 (163)
T ss_pred EeCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEECCcCCHHHHHhcCeEEEEecCHHHHHHHHHHHHHhcCCC
Confidence 445567899999999999999999987521 112333222110 000111 112333445566667899
Q ss_pred EEEEcCccccccccccccCCCchhhHHHHHHHHhhhcccccCCeEEEEecccchhhch
Q 035561 551 IIFVEDFDLFAGVRGQFIHTKQQDHESFINQLLVELDGFEKQDGVVLMATTRNIKQID 608 (979)
Q Consensus 551 ILfIDEIDaL~~~r~~~~~~~~~~~~~iln~LL~~LDg~~~~~~ViVIATTN~pe~LD 608 (979)
+|++||-..= -+....+.+..++.++. .. +..+|.+|.+++.++
T Consensus 103 illlDEP~~~----------LD~~~~~~l~~~l~~~~---~~-~~tiii~sh~~~~~~ 146 (163)
T cd03216 103 LLILDEPTAA----------LTPAEVERLFKVIRRLR---AQ-GVAVIFISHRLDEVF 146 (163)
T ss_pred EEEEECCCcC----------CCHHHHHHHHHHHHHHH---HC-CCEEEEEeCCHHHHH
Confidence 9999996421 12333444444554442 22 345555677766544
No 352
>PF00437 T2SE: Type II/IV secretion system protein; InterPro: IPR001482 A number of bacterial proteins, some of which are involved in a general secretion pathway (GSP) for the export of proteins (also called the type II pathway) belong to this group [, ]. These proteins are probably located in the cytoplasm and, on the basis of the presence of a conserved P-loop region IPR001687 from INTERPRO, bind ATP.; GO: 0005524 ATP binding, 0006810 transport, 0005622 intracellular; PDB: 1NLZ_C 2PT7_B 1OPX_A 1NLY_A 1G6O_B 2OAQ_2 2OAP_1 2JNQ_A 2JMZ_A 2GZA_B ....
Probab=96.71 E-value=0.0017 Score=71.23 Aligned_cols=100 Identities=27% Similarity=0.397 Sum_probs=62.3
Q ss_pred CCCCCCCcccCcHHHHHHHHHHHHhhcChhHHHhcCCCCCceeEecCCCCCChHHHHHHHHHHcCC---CEEEeec-hhh
Q 035561 449 NPPIPLKDFASVESMREEINEVVAFLQNPSAFQEMGARAPRGVLIVGERGTGKTSLALAIAAEARV---PVVNVEA-QEL 524 (979)
Q Consensus 449 ~~~~~f~DIvGleevke~L~eiV~~L~~p~~f~~lG~~~P~gVLL~GPPGTGKTtLArAlA~elg~---~~i~Is~-sdL 524 (979)
....++++++-.....+.+.+++... ++...++++.||+||||||+++++...... .++.+.. .++
T Consensus 98 ~~~~sle~l~~~~~~~~~~~~~l~~~----------v~~~~~ili~G~tGSGKTT~l~all~~i~~~~~~iv~iEd~~E~ 167 (270)
T PF00437_consen 98 SKPFSLEDLGESGSIPEEIAEFLRSA----------VRGRGNILISGPTGSGKTTLLNALLEEIPPEDERIVTIEDPPEL 167 (270)
T ss_dssp SS--CHCCCCHTHHCHHHHHHHHHHC----------HHTTEEEEEEESTTSSHHHHHHHHHHHCHTTTSEEEEEESSS-S
T ss_pred cccccHhhccCchhhHHHHHHHHhhc----------cccceEEEEECCCccccchHHHHHhhhccccccceEEeccccce
Confidence 45568888887766555555544331 223467999999999999999999998743 3444332 122
Q ss_pred hhhh-----hcc-cchhhHHHHHHHHHhcCCeEEEEcCcc
Q 035561 525 EAGL-----WVG-QSASNVRELFQTARDLAPVIIFVEDFD 558 (979)
Q Consensus 525 ~~~~-----~vG-~~~~~Ir~lF~~A~~~aP~ILfIDEID 558 (979)
.... +.. .......+++..+....|.+|+++|+-
T Consensus 168 ~l~~~~~~~~~~~~~~~~~~~~l~~~LR~~pD~iiigEiR 207 (270)
T PF00437_consen 168 RLPGPNQIQIQTRRDEISYEDLLKSALRQDPDVIIIGEIR 207 (270)
T ss_dssp --SCSSEEEEEEETTTBSHHHHHHHHTTS--SEEEESCE-
T ss_pred eecccceEEEEeecCcccHHHHHHHHhcCCCCcccccccC
Confidence 1010 111 234567788888888899999999984
No 353
>cd00984 DnaB_C DnaB helicase C terminal domain. The hexameric helicase DnaB unwinds the DNA duplex at the chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis.
Probab=96.71 E-value=0.0056 Score=65.62 Aligned_cols=38 Identities=29% Similarity=0.394 Sum_probs=31.3
Q ss_pred CCCCCceeEecCCCCCChHHHHHHHHHHc----CCCEEEeec
Q 035561 484 GARAPRGVLIVGERGTGKTSLALAIAAEA----RVPVVNVEA 521 (979)
Q Consensus 484 G~~~P~gVLL~GPPGTGKTtLArAlA~el----g~~~i~Is~ 521 (979)
|+++..-++|.|+||+|||+++..+|..+ +.++++++.
T Consensus 9 Gl~~G~l~lI~G~~G~GKT~~~~~~~~~~~~~~g~~vly~s~ 50 (242)
T cd00984 9 GLQPGDLIIIAARPSMGKTAFALNIAENIAKKQGKPVLFFSL 50 (242)
T ss_pred CCCCCeEEEEEeCCCCCHHHHHHHHHHHHHHhCCCceEEEeC
Confidence 67766779999999999999998887654 778877774
No 354
>cd00227 CPT Chloramphenicol (Cm) phosphotransferase (CPT). Cm-inactivating enzyme; modifies the primary (C-3) hydroxyl of the antibiotic. Related structurally to shikimate kinase II.
Probab=96.70 E-value=0.0014 Score=67.41 Aligned_cols=37 Identities=22% Similarity=0.345 Sum_probs=31.3
Q ss_pred ceeEecCCCCCChHHHHHHHHHHcCCCEEEeechhhh
Q 035561 489 RGVLIVGERGTGKTSLALAIAAEARVPVVNVEAQELE 525 (979)
Q Consensus 489 ~gVLL~GPPGTGKTtLArAlA~elg~~~i~Is~sdL~ 525 (979)
+-++|.|+||+||||+|+.++..++.+++.++..++.
T Consensus 3 ~~i~l~G~~gsGKst~a~~l~~~~~~~~~~~~~D~~~ 39 (175)
T cd00227 3 RIIILNGGSSAGKSSIARALQSVLAEPWLHFGVDSFI 39 (175)
T ss_pred CEEEEECCCCCCHHHHHHHHHHhhCCCccccCccHHH
Confidence 4589999999999999999999998888776665543
No 355
>cd01428 ADK Adenylate kinase (ADK) catalyzes the reversible phosphoryl transfer from adenosine triphosphates (ATP) to adenosine monophosphates (AMP) and to yield adenosine diphosphates (ADP). This enzyme is required for the biosynthesis of ADP and is essential for homeostasis of adenosine phosphates.
Probab=96.70 E-value=0.0013 Score=67.69 Aligned_cols=33 Identities=27% Similarity=0.502 Sum_probs=27.8
Q ss_pred eEecCCCCCChHHHHHHHHHHcCCCEEEeechhhh
Q 035561 491 VLIVGERGTGKTSLALAIAAEARVPVVNVEAQELE 525 (979)
Q Consensus 491 VLL~GPPGTGKTtLArAlA~elg~~~i~Is~sdL~ 525 (979)
|+|+|||||||||+|+.+|+.+|.+.+ +..+++
T Consensus 2 I~i~G~pGsGKst~a~~La~~~~~~~i--~~~~l~ 34 (194)
T cd01428 2 ILLLGPPGSGKGTQAERLAKKYGLPHI--STGDLL 34 (194)
T ss_pred EEEECCCCCCHHHHHHHHHHHcCCeEE--ECcHHH
Confidence 899999999999999999999987765 454554
No 356
>PTZ00088 adenylate kinase 1; Provisional
Probab=96.70 E-value=0.0017 Score=70.32 Aligned_cols=35 Identities=20% Similarity=0.482 Sum_probs=29.6
Q ss_pred CCCceeEecCCCCCChHHHHHHHHHHcCCCEEEee
Q 035561 486 RAPRGVLIVGERGTGKTSLALAIAAEARVPVVNVE 520 (979)
Q Consensus 486 ~~P~gVLL~GPPGTGKTtLArAlA~elg~~~i~Is 520 (979)
..|..++|.||||+||||+|+.+|+.+|+++++++
T Consensus 4 ~~~mrIvl~G~PGsGK~T~a~~La~~~g~~~is~g 38 (229)
T PTZ00088 4 KGPLKIVLFGAPGVGKGTFAEILSKKENLKHINMG 38 (229)
T ss_pred CCCceEEEECCCCCCHHHHHHHHHHHhCCcEEECC
Confidence 34556999999999999999999999998776544
No 357
>cd02021 GntK Gluconate kinase (GntK) catalyzes the phosphoryl transfer from ATP to gluconate. The resulting product gluconate-6-phoshate is an important precursor of gluconate metabolism. GntK acts as a dimmer composed of two identical subunits.
Probab=96.69 E-value=0.0013 Score=65.36 Aligned_cols=32 Identities=25% Similarity=0.653 Sum_probs=26.6
Q ss_pred eEecCCCCCChHHHHHHHHHHcCCCEEEeechhh
Q 035561 491 VLIVGERGTGKTSLALAIAAEARVPVVNVEAQEL 524 (979)
Q Consensus 491 VLL~GPPGTGKTtLArAlA~elg~~~i~Is~sdL 524 (979)
++|+|+||+||||+|+.+++.++.+++ +...+
T Consensus 2 i~l~G~~GsGKST~a~~l~~~~~~~~i--~~D~~ 33 (150)
T cd02021 2 IVVMGVSGSGKSTVGKALAERLGAPFI--DGDDL 33 (150)
T ss_pred EEEEcCCCCCHHHHHHHHHhhcCCEEE--eCccc
Confidence 689999999999999999999887665 44444
No 358
>PRK05973 replicative DNA helicase; Provisional
Probab=96.65 E-value=0.0051 Score=66.94 Aligned_cols=39 Identities=31% Similarity=0.278 Sum_probs=31.0
Q ss_pred CCCCCceeEecCCCCCChHHHHHHHHHHc---CCCEEEeech
Q 035561 484 GARAPRGVLIVGERGTGKTSLALAIAAEA---RVPVVNVEAQ 522 (979)
Q Consensus 484 G~~~P~gVLL~GPPGTGKTtLArAlA~el---g~~~i~Is~s 522 (979)
|+++..-+|+.|+||+|||+++-.+|.+. |.++++++..
T Consensus 60 Gl~~Gsl~LIaG~PG~GKT~lalqfa~~~a~~Ge~vlyfSlE 101 (237)
T PRK05973 60 QLKPGDLVLLGARPGHGKTLLGLELAVEAMKSGRTGVFFTLE 101 (237)
T ss_pred CCCCCCEEEEEeCCCCCHHHHHHHHHHHHHhcCCeEEEEEEe
Confidence 56666779999999999999998877654 7777777653
No 359
>PRK04301 radA DNA repair and recombination protein RadA; Validated
Probab=96.64 E-value=0.0045 Score=69.85 Aligned_cols=40 Identities=23% Similarity=0.335 Sum_probs=32.0
Q ss_pred CCCCCceeEecCCCCCChHHHHHHHHHHc---------CCCEEEeechh
Q 035561 484 GARAPRGVLIVGERGTGKTSLALAIAAEA---------RVPVVNVEAQE 523 (979)
Q Consensus 484 G~~~P~gVLL~GPPGTGKTtLArAlA~el---------g~~~i~Is~sd 523 (979)
|++...-++++||||||||+++-.+|..+ +..+++++..+
T Consensus 98 Gi~~g~vtei~G~~GsGKT~l~~~~~~~~~~~~~~gg~~~~~~yi~te~ 146 (317)
T PRK04301 98 GIETQSITEFYGEFGSGKTQICHQLAVNVQLPEEKGGLEGKAVYIDTEG 146 (317)
T ss_pred CccCCcEEEEECCCCCCHhHHHHHHHHHhccccccCCCCceEEEEeCCC
Confidence 56667778999999999999999998764 34677887654
No 360
>cd01122 GP4d_helicase GP4d_helicase is a homohexameric 5'-3' helicases. Helicases couple NTP hydrolysis to the unwinding of nucleic acid duplexes into their component strands.
Probab=96.64 E-value=0.0047 Score=67.47 Aligned_cols=38 Identities=24% Similarity=0.330 Sum_probs=30.3
Q ss_pred CCCCCceeEecCCCCCChHHHHHHHHHHc----CCCEEEeec
Q 035561 484 GARAPRGVLIVGERGTGKTSLALAIAAEA----RVPVVNVEA 521 (979)
Q Consensus 484 G~~~P~gVLL~GPPGTGKTtLArAlA~el----g~~~i~Is~ 521 (979)
|+....-++|.||||+|||+++..+|..+ |.++++++.
T Consensus 26 G~~~g~~~~i~g~~G~GKT~l~~~~~~~~~~~~g~~vl~iS~ 67 (271)
T cd01122 26 GLRKGELIILTAGTGVGKTTFLREYALDLITQHGVRVGTISL 67 (271)
T ss_pred EEcCCcEEEEEcCCCCCHHHHHHHHHHHHHHhcCceEEEEEc
Confidence 55666678999999999999999887764 667777765
No 361
>PF10236 DAP3: Mitochondrial ribosomal death-associated protein 3; InterPro: IPR019368 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of conserved proteins which were originally described as death-associated-protein-3 (DAP-3). The proteins carry a P-loop DNA-binding motif, and induce apoptosis []. DAP3 has been shown to be a pro-apoptotic factor in the mitochondrial matrix [] and to be crucial for mitochondrial biogenesis and so has also been designated as MRP-S29 (mitochondrial ribosomal protein subunit 29).
Probab=96.64 E-value=0.065 Score=60.60 Aligned_cols=105 Identities=18% Similarity=0.309 Sum_probs=59.0
Q ss_pred HHHHHHHHHhc---CCeEEEEcCccccccccccccCCC----chhhHHHHHHHHhhhccccc-CCeEEE--Eecccc---
Q 035561 537 VRELFQTARDL---APVIIFVEDFDLFAGVRGQFIHTK----QQDHESFINQLLVELDGFEK-QDGVVL--MATTRN--- 603 (979)
Q Consensus 537 Ir~lF~~A~~~---aP~ILfIDEIDaL~~~r~~~~~~~----~~~~~~iln~LL~~LDg~~~-~~~ViV--IATTN~--- 603 (979)
+..++++.... .|.++-||++.++... +...+.. +...-.+...|+..+.+-.. .++.+| +++|..
T Consensus 142 ~~~l~~EL~~~~~~~PVL~avD~~n~l~~~-S~Y~~~~~~~I~~~~L~l~~~f~~~~s~~~~~~nG~~v~~l~~t~~~~~ 220 (309)
T PF10236_consen 142 FQALIRELKAQSKRPPVLVAVDGFNALFGP-SAYRDPDFKPIHPHDLTLVRLFLDLLSGKRDFKNGAVVTALAATSVSNA 220 (309)
T ss_pred HHHHHHHHHhcccCCceEEEehhhHHhhCC-ccccCCCCccccHHHhhHHHHHHHHhcCccccCCCeEEEEEeccccccc
Confidence 44445554332 4789999999999865 2221111 12222445555554333211 233343 555544
Q ss_pred hh--hchhhhhcCCc------ee-------------eEeccCCCCHHHHHHHHHHHHHhc
Q 035561 604 IK--QIDEALQRPGR------MD-------------RIFNLQKPTQSEREKILRIAAQET 642 (979)
Q Consensus 604 pe--~LDpALlRpgR------Fd-------------~~I~~~~Pd~eeR~~IL~~~l~~~ 642 (979)
+. .++.++....- |. ..|.++..+.+|-..+++.+....
T Consensus 221 ~~~~~l~~~L~~~~~~~~~dPy~~~d~~~~~~l~~~~~i~v~~~s~~E~~~ll~yy~~~~ 280 (309)
T PF10236_consen 221 PKSPTLPVALGGKEGFPHLDPYVKRDPRVAESLKGVKPIEVPRLSKEEARSLLEYYADSG 280 (309)
T ss_pred cCCccchhhhccccCCCCCCCcccccHHHHHHhcCCceEEeCCCCHHHHHHHHHHHHHCC
Confidence 33 56666654221 11 167899999999999999988764
No 362
>COG0324 MiaA tRNA delta(2)-isopentenylpyrophosphate transferase [Translation, ribosomal structure and biogenesis]
Probab=96.64 E-value=0.019 Score=64.68 Aligned_cols=122 Identities=19% Similarity=0.293 Sum_probs=75.2
Q ss_pred CceeEecCCCCCChHHHHHHHHHHcCCCEEEeechhhhhhhhcccchhhHHHHHHHHHhcCCeEEEEcCccccccccccc
Q 035561 488 PRGVLIVGERGTGKTSLALAIAAEARVPVVNVEAQELEAGLWVGQSASNVRELFQTARDLAPVIIFVEDFDLFAGVRGQF 567 (979)
Q Consensus 488 P~gVLL~GPPGTGKTtLArAlA~elg~~~i~Is~sdL~~~~~vG~~~~~Ir~lF~~A~~~aP~ILfIDEIDaL~~~r~~~ 567 (979)
|.-++|+||.+||||.+|-.+|+.+|.++++++...+..++-+|...-... -....|.-+ ||.+|--
T Consensus 3 ~~~i~I~GPTAsGKT~lai~LAk~~~~eIIs~DSmQvYr~mdIGTAKps~~-----e~~~vpHhl-iDi~~p~------- 69 (308)
T COG0324 3 PKLIVIAGPTASGKTALAIALAKRLGGEIISLDSMQVYRGLDIGTAKPSLE-----ELAGVPHHL-IDIRDPT------- 69 (308)
T ss_pred ccEEEEECCCCcCHHHHHHHHHHHcCCcEEecchhhhcCCCcccCCCCCHH-----HHcCCCEEE-ecccCcc-------
Confidence 566999999999999999999999999999999877765554554433322 122345544 5666521
Q ss_pred cCCCchhhHHHHHHHHhhhcccccC--CeEEEEecccchhhchhhhhcCCceeeEeccCCCCHHHHHHH
Q 035561 568 IHTKQQDHESFINQLLVELDGFEKQ--DGVVLMATTRNIKQIDEALQRPGRMDRIFNLQKPTQSEREKI 634 (979)
Q Consensus 568 ~~~~~~~~~~iln~LL~~LDg~~~~--~~ViVIATTN~pe~LDpALlRpgRFd~~I~~~~Pd~eeR~~I 634 (979)
..-.........+..++.+... -.++|-||.-.... |.. -....|..+.+.|..+
T Consensus 70 ---e~ysa~~f~~~a~~~i~~i~~rgk~pIlVGGTglY~~a----L~~-----g~~~~p~~~~~~r~~~ 126 (308)
T COG0324 70 ---ESYSAAEFQRDALAAIDDILARGKLPILVGGTGLYLKA----LLE-----GLSLLPEADPEVRRRL 126 (308)
T ss_pred ---ccccHHHHHHHHHHHHHHHHhCCCCcEEEccHHHHHHH----HHc-----CCCCCCCCCHHHHHHH
Confidence 1122334455555666665443 34555566444443 332 1223666678888876
No 363
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=96.63 E-value=0.026 Score=64.08 Aligned_cols=61 Identities=25% Similarity=0.330 Sum_probs=38.0
Q ss_pred cHHHHHHHHHHHHh-hcCh-hHHHhcCCCCCceeEecCCCCCChHHHHHHHHHHc---CCCEEEeec
Q 035561 460 VESMREEINEVVAF-LQNP-SAFQEMGARAPRGVLIVGERGTGKTSLALAIAAEA---RVPVVNVEA 521 (979)
Q Consensus 460 leevke~L~eiV~~-L~~p-~~f~~lG~~~P~gVLL~GPPGTGKTtLArAlA~el---g~~~i~Is~ 521 (979)
.+.+++.|.+.+.. +... ..+. .....|.-++|.||+|+||||++..+|..+ +..+..+++
T Consensus 85 ~~~~~~~l~~~l~~~l~~~~~~~~-~~~~~~~vi~lvGpnGsGKTTt~~kLA~~l~~~g~~V~Li~~ 150 (318)
T PRK10416 85 PEELKELLKEELAEILEPVEKPLN-IEEKKPFVILVVGVNGVGKTTTIGKLAHKYKAQGKKVLLAAG 150 (318)
T ss_pred HHHHHHHHHHHHHHHhCcCCcccc-ccCCCCeEEEEECCCCCcHHHHHHHHHHHHHhcCCeEEEEec
Confidence 34566666655544 3311 1111 122346778899999999999999999876 444554444
No 364
>PLN02674 adenylate kinase
Probab=96.61 E-value=0.0072 Score=66.07 Aligned_cols=38 Identities=16% Similarity=0.332 Sum_probs=30.8
Q ss_pred CCCceeEecCCCCCChHHHHHHHHHHcCCCEEEeechhhh
Q 035561 486 RAPRGVLIVGERGTGKTSLALAIAAEARVPVVNVEAQELE 525 (979)
Q Consensus 486 ~~P~gVLL~GPPGTGKTtLArAlA~elg~~~i~Is~sdL~ 525 (979)
+.+..++|.||||+||||+|+.+|+.+|.+. ++..+++
T Consensus 29 ~~~~~i~l~G~PGsGKgT~a~~La~~~~~~h--is~Gdll 66 (244)
T PLN02674 29 KPDKRLILIGPPGSGKGTQSPIIKDEYCLCH--LATGDML 66 (244)
T ss_pred ccCceEEEECCCCCCHHHHHHHHHHHcCCcE--EchhHHH
Confidence 3345699999999999999999999998654 5566665
No 365
>TIGR01313 therm_gnt_kin carbohydrate kinase, thermoresistant glucokinase family. This model represents a subfamily of proteins that includes thermoresistant and thermosensitve isozymes of gluconate kinase (gluconokinase) in E. coli and other related proteins; members of this family are often named by similarity to the thermostable isozyme. These proteins show homology to shikimate kinases and adenylate kinases but not to gluconate kinases from the FGGY family of carbohydrate kinases.
Probab=96.61 E-value=0.0015 Score=65.83 Aligned_cols=32 Identities=28% Similarity=0.561 Sum_probs=26.4
Q ss_pred eEecCCCCCChHHHHHHHHHHcCCCEEEeechhh
Q 035561 491 VLIVGERGTGKTSLALAIAAEARVPVVNVEAQEL 524 (979)
Q Consensus 491 VLL~GPPGTGKTtLArAlA~elg~~~i~Is~sdL 524 (979)
++|.|||||||||+|+.+++.++.+++ +..++
T Consensus 1 i~l~G~~GsGKSTla~~l~~~l~~~~v--~~D~~ 32 (163)
T TIGR01313 1 FVLMGVAGSGKSTIASALAHRLGAKFI--EGDDL 32 (163)
T ss_pred CEEECCCCCCHHHHHHHHHHhcCCeEE--eCccc
Confidence 578999999999999999999986664 44444
No 366
>TIGR03574 selen_PSTK L-seryl-tRNA(Sec) kinase, archaeal. Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents archaeal proteins with this activity.
Probab=96.58 E-value=0.0038 Score=67.81 Aligned_cols=34 Identities=18% Similarity=0.449 Sum_probs=28.4
Q ss_pred eEecCCCCCChHHHHHHHHHHc---CCCEEEeechhh
Q 035561 491 VLIVGERGTGKTSLALAIAAEA---RVPVVNVEAQEL 524 (979)
Q Consensus 491 VLL~GPPGTGKTtLArAlA~el---g~~~i~Is~sdL 524 (979)
|+|+|+||+||||+|+.++..+ +.+++.++...+
T Consensus 2 Ivl~G~pGSGKST~a~~La~~l~~~~~~v~~i~~D~l 38 (249)
T TIGR03574 2 IILTGLPGVGKSTFSKELAKKLSEKNIDVIILGTDLI 38 (249)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHHcCCceEEEccHHH
Confidence 7899999999999999999987 566777766444
No 367
>cd01129 PulE-GspE PulE/GspE The type II secretory pathway is the main terminal branch of the general secretory pathway (GSP). It is responsible for the export the majority of Gram-negative bacterial exoenzymes and toxins. PulE is a cytoplasmic protein of the GSP, which contains an ATP binding site and a tetracysteine motif. This subgroup also includes PillB and HofB.
Probab=96.58 E-value=0.005 Score=67.96 Aligned_cols=94 Identities=17% Similarity=0.232 Sum_probs=57.7
Q ss_pred CCCCcccCcHHHHHHHHHHHHhhcChhHHHhcCCCCCceeEecCCCCCChHHHHHHHHHHcC---CCEEEeec-hhhhhh
Q 035561 452 IPLKDFASVESMREEINEVVAFLQNPSAFQEMGARAPRGVLIVGERGTGKTSLALAIAAEAR---VPVVNVEA-QELEAG 527 (979)
Q Consensus 452 ~~f~DIvGleevke~L~eiV~~L~~p~~f~~lG~~~P~gVLL~GPPGTGKTtLArAlA~elg---~~~i~Is~-sdL~~~ 527 (979)
.+++++.-.++..+.|.+++. .....+++.||+|+||||+++++..... ..++.+.- .++...
T Consensus 57 ~~l~~lg~~~~~~~~l~~~~~-------------~~~GlilisG~tGSGKTT~l~all~~i~~~~~~iitiEdp~E~~~~ 123 (264)
T cd01129 57 LDLEKLGLKPENLEIFRKLLE-------------KPHGIILVTGPTGSGKTTTLYSALSELNTPEKNIITVEDPVEYQIP 123 (264)
T ss_pred CCHHHcCCCHHHHHHHHHHHh-------------cCCCEEEEECCCCCcHHHHHHHHHhhhCCCCCeEEEECCCceecCC
Confidence 456777666655555543321 1123489999999999999999987763 33444422 121100
Q ss_pred -----hhcccchhhHHHHHHHHHhcCCeEEEEcCcc
Q 035561 528 -----LWVGQSASNVRELFQTARDLAPVIIFVEDFD 558 (979)
Q Consensus 528 -----~~vG~~~~~Ir~lF~~A~~~aP~ILfIDEID 558 (979)
...........+....+....|.+|+++|+.
T Consensus 124 ~~~q~~v~~~~~~~~~~~l~~~lR~~PD~i~vgEiR 159 (264)
T cd01129 124 GINQVQVNEKAGLTFARGLRAILRQDPDIIMVGEIR 159 (264)
T ss_pred CceEEEeCCcCCcCHHHHHHHHhccCCCEEEeccCC
Confidence 0011112245667777778899999999994
No 368
>PRK00091 miaA tRNA delta(2)-isopentenylpyrophosphate transferase; Reviewed
Probab=96.57 E-value=0.015 Score=65.63 Aligned_cols=38 Identities=26% Similarity=0.537 Sum_probs=33.0
Q ss_pred CceeEecCCCCCChHHHHHHHHHHcCCCEEEeechhhh
Q 035561 488 PRGVLIVGERGTGKTSLALAIAAEARVPVVNVEAQELE 525 (979)
Q Consensus 488 P~gVLL~GPPGTGKTtLArAlA~elg~~~i~Is~sdL~ 525 (979)
+.-+++.||+|||||++|..+|++++.++++.+.-.+.
T Consensus 4 ~~~i~i~GptgsGKt~la~~la~~~~~~iis~Ds~Qvy 41 (307)
T PRK00091 4 PKVIVIVGPTASGKTALAIELAKRLNGEIISADSMQVY 41 (307)
T ss_pred ceEEEEECCCCcCHHHHHHHHHHhCCCcEEecccccee
Confidence 45689999999999999999999999998887776554
No 369
>COG4619 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=96.56 E-value=0.0072 Score=62.40 Aligned_cols=27 Identities=33% Similarity=0.436 Sum_probs=23.3
Q ss_pred CCCCceeEecCCCCCChHHHHHHHHHH
Q 035561 485 ARAPRGVLIVGERGTGKTSLALAIAAE 511 (979)
Q Consensus 485 ~~~P~gVLL~GPPGTGKTtLArAlA~e 511 (979)
+.+...++|+||+|||||++.|++|.-
T Consensus 26 v~~Ge~iaitGPSG~GKStllk~va~L 52 (223)
T COG4619 26 VRAGEFIAITGPSGCGKSTLLKIVASL 52 (223)
T ss_pred ecCCceEEEeCCCCccHHHHHHHHHhc
Confidence 445566999999999999999999984
No 370
>TIGR02236 recomb_radA DNA repair and recombination protein RadA. This family consists exclusively of archaeal RadA protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239), and archaeal RadB (TIGR02237). This protein is involved in DNA repair and recombination. The member from Pyrococcus horikoshii contains an intein.
Probab=96.56 E-value=0.0059 Score=68.49 Aligned_cols=40 Identities=23% Similarity=0.361 Sum_probs=31.8
Q ss_pred CCCCCceeEecCCCCCChHHHHHHHHHHc---------CCCEEEeechh
Q 035561 484 GARAPRGVLIVGERGTGKTSLALAIAAEA---------RVPVVNVEAQE 523 (979)
Q Consensus 484 G~~~P~gVLL~GPPGTGKTtLArAlA~el---------g~~~i~Is~sd 523 (979)
|++...-++++||||||||+++-.+|..+ +-.+++++..+
T Consensus 91 Gi~~g~i~ei~G~~g~GKT~l~~~~~~~~~~~~~~g~~~~~~~yi~te~ 139 (310)
T TIGR02236 91 GIETQAITEVFGEFGSGKTQICHQLAVNVQLPEEKGGLGGKAVYIDTEN 139 (310)
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHHHhcCCcccCCCcceEEEEECCC
Confidence 56666778899999999999999998764 23788888655
No 371
>PLN02200 adenylate kinase family protein
Probab=96.55 E-value=0.0023 Score=69.40 Aligned_cols=39 Identities=21% Similarity=0.324 Sum_probs=32.8
Q ss_pred CCCCceeEecCCCCCChHHHHHHHHHHcCCCEEEeechhhh
Q 035561 485 ARAPRGVLIVGERGTGKTSLALAIAAEARVPVVNVEAQELE 525 (979)
Q Consensus 485 ~~~P~gVLL~GPPGTGKTtLArAlA~elg~~~i~Is~sdL~ 525 (979)
.+.|.-+++.|||||||||+|+.+|..+|.+ .+++++++
T Consensus 40 ~~~~~ii~I~G~PGSGKsT~a~~La~~~g~~--his~gdll 78 (234)
T PLN02200 40 EKTPFITFVLGGPGSGKGTQCEKIVETFGFK--HLSAGDLL 78 (234)
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHHhCCe--EEEccHHH
Confidence 4556778999999999999999999999865 56777776
No 372
>PRK03731 aroL shikimate kinase II; Reviewed
Probab=96.55 E-value=0.0022 Score=65.18 Aligned_cols=32 Identities=31% Similarity=0.603 Sum_probs=28.8
Q ss_pred ceeEecCCCCCChHHHHHHHHHHcCCCEEEee
Q 035561 489 RGVLIVGERGTGKTSLALAIAAEARVPVVNVE 520 (979)
Q Consensus 489 ~gVLL~GPPGTGKTtLArAlA~elg~~~i~Is 520 (979)
..++|.|+||||||++++.+|..+|.+++..+
T Consensus 3 ~~i~~~G~~GsGKst~~~~la~~lg~~~~d~D 34 (171)
T PRK03731 3 QPLFLVGARGCGKTTVGMALAQALGYRFVDTD 34 (171)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhCCCEEEcc
Confidence 35899999999999999999999999988654
No 373
>PRK14530 adenylate kinase; Provisional
Probab=96.54 E-value=0.002 Score=68.35 Aligned_cols=30 Identities=30% Similarity=0.459 Sum_probs=26.7
Q ss_pred eeEecCCCCCChHHHHHHHHHHcCCCEEEe
Q 035561 490 GVLIVGERGTGKTSLALAIAAEARVPVVNV 519 (979)
Q Consensus 490 gVLL~GPPGTGKTtLArAlA~elg~~~i~I 519 (979)
.|+|.||||+||||+++.+|+.++.+++.+
T Consensus 5 ~I~i~G~pGsGKsT~~~~La~~~~~~~i~~ 34 (215)
T PRK14530 5 RILLLGAPGAGKGTQSSNLAEEFGVEHVTT 34 (215)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCeEEec
Confidence 499999999999999999999999776644
No 374
>COG3854 SpoIIIAA ncharacterized protein conserved in bacteria [Function unknown]
Probab=96.54 E-value=0.0054 Score=66.00 Aligned_cols=70 Identities=24% Similarity=0.352 Sum_probs=45.9
Q ss_pred ceeEecCCCCCChHHHHHHHHHHcC--------CCEEEeechhhhhhhhccc-------------chhhHHHHHHHHHhc
Q 035561 489 RGVLIVGERGTGKTSLALAIAAEAR--------VPVVNVEAQELEAGLWVGQ-------------SASNVRELFQTARDL 547 (979)
Q Consensus 489 ~gVLL~GPPGTGKTtLArAlA~elg--------~~~i~Is~sdL~~~~~vG~-------------~~~~Ir~lF~~A~~~ 547 (979)
.+.|+.|||||||||+.|-+|.-+. ..+..++-+.-.++-..|. ..-+-..+....+.+
T Consensus 138 lntLiigpP~~GKTTlLRdiaR~~s~g~~~~l~kkv~IiDersEIag~~~gvpq~~~g~R~dVld~cpk~~gmmmaIrsm 217 (308)
T COG3854 138 LNTLIIGPPQVGKTTLLRDIARLLSDGINQFLPKKVGIIDERSEIAGCLNGVPQHGRGRRMDVLDPCPKAEGMMMAIRSM 217 (308)
T ss_pred eeeEEecCCCCChHHHHHHHHHHhhccccccCCceEEEEeccchhhccccCCchhhhhhhhhhcccchHHHHHHHHHHhc
Confidence 3589999999999999999998652 3455555432111111111 122233456667889
Q ss_pred CCeEEEEcCcc
Q 035561 548 APVIIFVEDFD 558 (979)
Q Consensus 548 aP~ILfIDEID 558 (979)
+|-|+++|||.
T Consensus 218 ~PEViIvDEIG 228 (308)
T COG3854 218 SPEVIIVDEIG 228 (308)
T ss_pred CCcEEEEeccc
Confidence 99999999995
No 375
>PRK04040 adenylate kinase; Provisional
Probab=96.54 E-value=0.0073 Score=63.37 Aligned_cols=35 Identities=20% Similarity=0.300 Sum_probs=28.1
Q ss_pred CceeEecCCCCCChHHHHHHHHHHc--CCCEEEeechhh
Q 035561 488 PRGVLIVGERGTGKTSLALAIAAEA--RVPVVNVEAQEL 524 (979)
Q Consensus 488 P~gVLL~GPPGTGKTtLArAlA~el--g~~~i~Is~sdL 524 (979)
|.-++++|+|||||||+++.+++.+ +.++ ++..++
T Consensus 2 ~~~i~v~G~pG~GKtt~~~~l~~~l~~~~~~--~~~g~~ 38 (188)
T PRK04040 2 MKVVVVTGVPGVGKTTVLNKALEKLKEDYKI--VNFGDV 38 (188)
T ss_pred CeEEEEEeCCCCCHHHHHHHHHHHhccCCeE--EecchH
Confidence 5668999999999999999999999 5555 344443
No 376
>cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.54 E-value=0.0081 Score=60.36 Aligned_cols=110 Identities=20% Similarity=0.281 Sum_probs=60.0
Q ss_pred CCCceeEecCCCCCChHHHHHHHHHHcCCC--EEEeechhhhh------hhhcc-----cchhhHHHHHHHHHhcCCeEE
Q 035561 486 RAPRGVLIVGERGTGKTSLALAIAAEARVP--VVNVEAQELEA------GLWVG-----QSASNVRELFQTARDLAPVII 552 (979)
Q Consensus 486 ~~P~gVLL~GPPGTGKTtLArAlA~elg~~--~i~Is~sdL~~------~~~vG-----~~~~~Ir~lF~~A~~~aP~IL 552 (979)
.+...+.|.||+|+||||+++++++..... -+.+++.++.. ....+ .+...-+-.+..+-...|.++
T Consensus 23 ~~g~~~~i~G~nGsGKStll~~l~g~~~~~~G~i~~~~~~~~~~~~~~~~~~i~~~~qlS~G~~~r~~l~~~l~~~~~i~ 102 (157)
T cd00267 23 KAGEIVALVGPNGSGKSTLLRAIAGLLKPTSGEILIDGKDIAKLPLEELRRRIGYVPQLSGGQRQRVALARALLLNPDLL 102 (157)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCCCCCccEEEECCEEcccCCHHHHHhceEEEeeCCHHHHHHHHHHHHHhcCCCEE
Confidence 444578899999999999999999876421 22333322110 00011 011222333555555679999
Q ss_pred EEcCccccccccccccCCCchhhHHHHHHHHhhhcccccCCeEEEEecccchhhchh
Q 035561 553 FVEDFDLFAGVRGQFIHTKQQDHESFINQLLVELDGFEKQDGVVLMATTRNIKQIDE 609 (979)
Q Consensus 553 fIDEIDaL~~~r~~~~~~~~~~~~~iln~LL~~LDg~~~~~~ViVIATTN~pe~LDp 609 (979)
++||...= -+......+..++..+- .. +..++.+|++++.++.
T Consensus 103 ilDEp~~~----------lD~~~~~~l~~~l~~~~---~~-~~tii~~sh~~~~~~~ 145 (157)
T cd00267 103 LLDEPTSG----------LDPASRERLLELLRELA---EE-GRTVIIVTHDPELAEL 145 (157)
T ss_pred EEeCCCcC----------CCHHHHHHHHHHHHHHH---HC-CCEEEEEeCCHHHHHH
Confidence 99997532 12223334444444332 22 2355666777666553
No 377
>PRK14730 coaE dephospho-CoA kinase; Provisional
Probab=96.54 E-value=0.0062 Score=64.18 Aligned_cols=33 Identities=18% Similarity=0.415 Sum_probs=28.3
Q ss_pred eEecCCCCCChHHHHHHHHHHcCCCEEEeechhhh
Q 035561 491 VLIVGERGTGKTSLALAIAAEARVPVVNVEAQELE 525 (979)
Q Consensus 491 VLL~GPPGTGKTtLArAlA~elg~~~i~Is~sdL~ 525 (979)
|.|+|++||||||+++.+++.+|.+++ ++.++.
T Consensus 4 i~itG~~gsGKst~~~~l~~~~g~~~i--~~D~~~ 36 (195)
T PRK14730 4 IGLTGGIASGKSTVGNYLAQQKGIPIL--DADIYA 36 (195)
T ss_pred EEEECCCCCCHHHHHHHHHHhhCCeEe--eCcHHH
Confidence 789999999999999999998898877 555554
No 378
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=96.54 E-value=0.011 Score=59.16 Aligned_cols=72 Identities=18% Similarity=0.248 Sum_probs=42.4
Q ss_pred CCCCceeEecCCCCCChHHHHHHHHHHcCC--CEEEeechhhhhhhhcc-c-chhhHHHHHHHHHhcCCeEEEEcCcc
Q 035561 485 ARAPRGVLIVGERGTGKTSLALAIAAEARV--PVVNVEAQELEAGLWVG-Q-SASNVRELFQTARDLAPVIIFVEDFD 558 (979)
Q Consensus 485 ~~~P~gVLL~GPPGTGKTtLArAlA~elg~--~~i~Is~sdL~~~~~vG-~-~~~~Ir~lF~~A~~~aP~ILfIDEID 558 (979)
+.+...+.|.||+|+|||||++++++.... --+.++...-+ . |+. - +...-|-.+..|-...|.++++||-.
T Consensus 23 ~~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~~~~~i-~-~~~~lS~G~~~rv~laral~~~p~illlDEP~ 98 (144)
T cd03221 23 INPGDRIGLVGRNGAGKSTLLKLIAGELEPDEGIVTWGSTVKI-G-YFEQLSGGEKMRLALAKLLLENPNLLLLDEPT 98 (144)
T ss_pred ECCCCEEEEECCCCCCHHHHHHHHcCCCCCCceEEEECCeEEE-E-EEccCCHHHHHHHHHHHHHhcCCCEEEEeCCc
Confidence 445567889999999999999999997631 11122211000 0 000 0 11122233455556689999999975
No 379
>PRK06547 hypothetical protein; Provisional
Probab=96.54 E-value=0.0024 Score=66.05 Aligned_cols=35 Identities=40% Similarity=0.511 Sum_probs=30.0
Q ss_pred CCCceeEecCCCCCChHHHHHHHHHHcCCCEEEee
Q 035561 486 RAPRGVLIVGERGTGKTSLALAIAAEARVPVVNVE 520 (979)
Q Consensus 486 ~~P~gVLL~GPPGTGKTtLArAlA~elg~~~i~Is 520 (979)
..+.-|++.|++||||||+|+.+++.++.+++..+
T Consensus 13 ~~~~~i~i~G~~GsGKTt~a~~l~~~~~~~~~~~d 47 (172)
T PRK06547 13 GGMITVLIDGRSGSGKTTLAGALAARTGFQLVHLD 47 (172)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHhCCCeeccc
Confidence 44667889999999999999999999998877554
No 380
>PF00406 ADK: Adenylate kinase; InterPro: IPR000850 Adenylate kinases (ADK) are phosphotransferases that catalyse the reversible reaction AMP + MgATP = ADP + MgADP an essential reaction for many processes in living cells. Two ADK isozymes have been identified in mammalian cells. These specifically bind AMP and favour binding to ATP over other nucleotide triphosphates (AK1 is cytosolic and AK2 is located in the mitochondria). A third ADK has been identified in bovine heart and human cells [], this is a mitochondrial GTP:AMP phosphotransferase, also specific for the phosphorylation of AMP, but can only use GTP or ITP as a substrate []. ADK has also been identified in different bacterial species and in yeast []. Two further enzymes are known to be related to the ADK family, i.e. yeast uridine monophosphokinase and slime mold UMP-CMP kinase. Within the ADK family there are several conserved regions, including the ATP-binding domains. One of the most conserved areas includes an Arg residue, whose modification inactivates the enzyme, together with an Asp that resides in the catalytic cleft of the enzyme and participates in a salt bridge.; GO: 0005524 ATP binding, 0019205 nucleobase-containing compound kinase activity, 0006139 nucleobase-containing compound metabolic process; PDB: 1ZD8_A 3TLX_D 1TEV_A 1ZAK_B 3CM0_A 3ADK_A 1ZIP_A 1ZIO_A 1ZIN_A 3NDP_A ....
Probab=96.54 E-value=0.013 Score=58.66 Aligned_cols=31 Identities=29% Similarity=0.454 Sum_probs=26.6
Q ss_pred ecCCCCCChHHHHHHHHHHcCCCEEEeechhhh
Q 035561 493 IVGERGTGKTSLALAIAAEARVPVVNVEAQELE 525 (979)
Q Consensus 493 L~GPPGTGKTtLArAlA~elg~~~i~Is~sdL~ 525 (979)
|.||||+||||+|+.||...|. ..++..+++
T Consensus 1 i~G~PgsGK~t~~~~la~~~~~--~~is~~~ll 31 (151)
T PF00406_consen 1 ILGPPGSGKGTQAKRLAKRYGL--VHISVGDLL 31 (151)
T ss_dssp EEESTTSSHHHHHHHHHHHHTS--EEEEHHHHH
T ss_pred CcCCCCCChHHHHHHHHHhcCc--ceechHHHH
Confidence 5799999999999999999975 566777776
No 381
>PRK10536 hypothetical protein; Provisional
Probab=96.53 E-value=0.009 Score=65.71 Aligned_cols=22 Identities=45% Similarity=0.546 Sum_probs=20.5
Q ss_pred eeEecCCCCCChHHHHHHHHHH
Q 035561 490 GVLIVGERGTGKTSLALAIAAE 511 (979)
Q Consensus 490 gVLL~GPPGTGKTtLArAlA~e 511 (979)
-+++.||+|||||+||.++|.+
T Consensus 76 lV~i~G~aGTGKT~La~a~a~~ 97 (262)
T PRK10536 76 LIFATGEAGCGKTWISAAKAAE 97 (262)
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 5899999999999999999985
No 382
>PRK09519 recA DNA recombination protein RecA; Reviewed
Probab=96.52 E-value=0.0092 Score=74.49 Aligned_cols=117 Identities=17% Similarity=0.126 Sum_probs=65.3
Q ss_pred CCCCCceeEecCCCCCChHHHHHHHHHH---cCCCEEEeechhhhhhh---hcc------------cchhhHHHHHHHHH
Q 035561 484 GARAPRGVLIVGERGTGKTSLALAIAAE---ARVPVVNVEAQELEAGL---WVG------------QSASNVRELFQTAR 545 (979)
Q Consensus 484 G~~~P~gVLL~GPPGTGKTtLArAlA~e---lg~~~i~Is~sdL~~~~---~vG------------~~~~~Ir~lF~~A~ 545 (979)
|++....++++||||||||+|+..++.. .|..+++++...-.... -.| ..+..+..+-...+
T Consensus 56 Gip~GsiteI~G~~GsGKTtLal~~~~~a~~~G~~v~yId~E~t~~~~~A~~lGvDl~~llv~~~~~~E~~l~~i~~lv~ 135 (790)
T PRK09519 56 GLPRGRVIEIYGPESSGKTTVALHAVANAQAAGGVAAFIDAEHALDPDYAKKLGVDTDSLLVSQPDTGEQALEIADMLIR 135 (790)
T ss_pred CccCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEECCccchhHHHHHHcCCChhHeEEecCCCHHHHHHHHHHHhh
Confidence 5666677899999999999999765543 36677777765422100 001 11222222222234
Q ss_pred hcCCeEEEEcCccccccccccccC-CCc--hhhHHHHHHHHhhhcccccCCeEEEEec
Q 035561 546 DLAPVIIFVEDFDLFAGVRGQFIH-TKQ--QDHESFINQLLVELDGFEKQDGVVLMAT 600 (979)
Q Consensus 546 ~~aP~ILfIDEIDaL~~~r~~~~~-~~~--~~~~~iln~LL~~LDg~~~~~~ViVIAT 600 (979)
...+.+|+||-+.++.+...-... +.. ....+.++++|..|..+-...++.+|.|
T Consensus 136 ~~~~~LVVIDSI~aL~~r~E~~g~~g~~~~~~q~rl~~q~L~~L~~~l~~~nvtvi~T 193 (790)
T PRK09519 136 SGALDIVVIDSVAALVPRAELEGEMGDSHVGLQARLMSQALRKMTGALNNSGTTAIFI 193 (790)
T ss_pred cCCCeEEEEcchhhhcchhhccCCCCcccHHHHHHHHHHHHHHHHHHHHhCCCEEEEE
Confidence 457999999999999852211001 111 1223445566666655544455666655
No 383
>COG1102 Cmk Cytidylate kinase [Nucleotide transport and metabolism]
Probab=96.52 E-value=0.0021 Score=65.75 Aligned_cols=28 Identities=32% Similarity=0.504 Sum_probs=26.0
Q ss_pred eEecCCCCCChHHHHHHHHHHcCCCEEE
Q 035561 491 VLIVGERGTGKTSLALAIAAEARVPVVN 518 (979)
Q Consensus 491 VLL~GPPGTGKTtLArAlA~elg~~~i~ 518 (979)
|-+.|||||||||+|+.+|..+|.++++
T Consensus 3 ItIsG~pGsG~TTva~~lAe~~gl~~vs 30 (179)
T COG1102 3 ITISGLPGSGKTTVARELAEHLGLKLVS 30 (179)
T ss_pred EEeccCCCCChhHHHHHHHHHhCCceee
Confidence 5688999999999999999999999875
No 384
>PRK05057 aroK shikimate kinase I; Reviewed
Probab=96.50 E-value=0.0025 Score=65.64 Aligned_cols=34 Identities=21% Similarity=0.498 Sum_probs=30.6
Q ss_pred CceeEecCCCCCChHHHHHHHHHHcCCCEEEeec
Q 035561 488 PRGVLIVGERGTGKTSLALAIAAEARVPVVNVEA 521 (979)
Q Consensus 488 P~gVLL~GPPGTGKTtLArAlA~elg~~~i~Is~ 521 (979)
+..|+|.||+|+|||++++.+|+.++.+++..+.
T Consensus 4 ~~~I~liG~~GaGKStl~~~La~~l~~~~vd~D~ 37 (172)
T PRK05057 4 KRNIFLVGPMGAGKSTIGRQLAQQLNMEFYDSDQ 37 (172)
T ss_pred CCEEEEECCCCcCHHHHHHHHHHHcCCcEEECCc
Confidence 4569999999999999999999999999887764
No 385
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=96.50 E-value=0.033 Score=61.84 Aligned_cols=37 Identities=27% Similarity=0.398 Sum_probs=28.4
Q ss_pred CCCceeEecCCCCCChHHHHHHHHHHc---CCCEEEeech
Q 035561 486 RAPRGVLIVGERGTGKTSLALAIAAEA---RVPVVNVEAQ 522 (979)
Q Consensus 486 ~~P~gVLL~GPPGTGKTtLArAlA~el---g~~~i~Is~s 522 (979)
..|+-++++||+|+||||++..+|..+ |..+.-+++.
T Consensus 70 ~~~~vi~l~G~~G~GKTTt~akLA~~l~~~g~~V~li~~D 109 (272)
T TIGR00064 70 NKPNVILFVGVNGVGKTTTIAKLANKLKKQGKSVLLAAGD 109 (272)
T ss_pred CCCeEEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEEeCC
Confidence 456778899999999999999888766 5555555543
No 386
>TIGR03878 thermo_KaiC_2 KaiC domain protein, AF_0795 family. This KaiC domain-containing protein family occurs sporadically across a broad taxonomic range (Euryarchaeota, Aquificae, Dictyoglomi, Epsilonproteobacteria, and Firmicutes), but exclusively in thermophiles.
Probab=96.47 E-value=0.012 Score=64.66 Aligned_cols=39 Identities=28% Similarity=0.308 Sum_probs=31.0
Q ss_pred CCCCCceeEecCCCCCChHHHHHHHHHHc---CCCEEEeech
Q 035561 484 GARAPRGVLIVGERGTGKTSLALAIAAEA---RVPVVNVEAQ 522 (979)
Q Consensus 484 G~~~P~gVLL~GPPGTGKTtLArAlA~el---g~~~i~Is~s 522 (979)
|++....++++||||||||+++..+|.+. |.++++++..
T Consensus 32 Gip~gs~~lI~G~pGtGKT~l~~qf~~~~a~~Ge~vlyis~E 73 (259)
T TIGR03878 32 GIPAYSVINITGVSDTGKSLMVEQFAVTQASRGNPVLFVTVE 73 (259)
T ss_pred CeECCcEEEEEcCCCCCHHHHHHHHHHHHHhCCCcEEEEEec
Confidence 66777789999999999999999886643 6677777654
No 387
>cd02027 APSK Adenosine 5'-phosphosulfate kinase (APSK) catalyzes the phosphorylation of adenosine 5'-phosphosulfate to form 3'-phosphoadenosine 5'-phosphosulfate (PAPS). The end-product PAPS is a biologically "activated" sulfate form important for the assimilation of inorganic sulfate.
Probab=96.47 E-value=0.0074 Score=60.72 Aligned_cols=34 Identities=24% Similarity=0.503 Sum_probs=29.1
Q ss_pred eEecCCCCCChHHHHHHHHHHc---CCCEEEeechhh
Q 035561 491 VLIVGERGTGKTSLALAIAAEA---RVPVVNVEAQEL 524 (979)
Q Consensus 491 VLL~GPPGTGKTtLArAlA~el---g~~~i~Is~sdL 524 (979)
++++|+||+||||+|+.++..+ +.+.+.++...+
T Consensus 2 i~i~G~~GsGKSTla~~L~~~l~~~g~~~~~i~~d~~ 38 (149)
T cd02027 2 IWLTGLSGSGKSTIARALEEKLFQRGRPVYVLDGDNV 38 (149)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEEcCHHH
Confidence 6899999999999999999998 667777776554
No 388
>PF12780 AAA_8: P-loop containing dynein motor region D4; InterPro: IPR024317 The 380 kDa motor unit of dynein belongs to the AAA class of chaperone-like ATPases. The core of the 380 kDa motor unit contains a concatenated chain of six AAA modules, of which four (D1 - D4) correspond to the ATP binding sites with P-loop signatures described previously, and two (D5, D6) are modules in which the P loop has been lost in evolution. This particular entry represents the D4 ATP-binding domain of the motor [].; PDB: 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=96.45 E-value=0.015 Score=64.57 Aligned_cols=91 Identities=21% Similarity=0.288 Sum_probs=61.5
Q ss_pred CcccCcHHHHHHHHHHHHhhcChhHHHhcCCCCCceeEecCCCCCChHHHHHHHHHHcCCCEEEeechhhhhhhhcccch
Q 035561 455 KDFASVESMREEINEVVAFLQNPSAFQEMGARAPRGVLIVGERGTGKTSLALAIAAEARVPVVNVEAQELEAGLWVGQSA 534 (979)
Q Consensus 455 ~DIvGleevke~L~eiV~~L~~p~~f~~lG~~~P~gVLL~GPPGTGKTtLArAlA~elg~~~i~Is~sdL~~~~~vG~~~ 534 (979)
=+++-.+++.+.+..+..-|..| ..+.||.|.+||||++++|..|.-++..++.+..+.-. -..+-.
T Consensus 8 m~lVlf~~ai~hi~ri~RvL~~~----------~Gh~LLvG~~GsGr~sl~rLaa~i~~~~~~~i~~~~~y---~~~~f~ 74 (268)
T PF12780_consen 8 MNLVLFDEAIEHIARISRVLSQP----------RGHALLVGVGGSGRQSLARLAAFICGYEVFQIEITKGY---SIKDFK 74 (268)
T ss_dssp ------HHHHHHHHHHHHHHCST----------TEEEEEECTTTSCHHHHHHHHHHHTTEEEE-TTTSTTT---HHHHHH
T ss_pred cceeeHHHHHHHHHHHHHHHcCC----------CCCeEEecCCCccHHHHHHHHHHHhccceEEEEeeCCc---CHHHHH
Confidence 35677788888887776666544 25799999999999999999999999999988865421 123334
Q ss_pred hhHHHHHHHHH-hcCCeEEEEcCcc
Q 035561 535 SNVRELFQTAR-DLAPVIIFVEDFD 558 (979)
Q Consensus 535 ~~Ir~lF~~A~-~~aP~ILfIDEID 558 (979)
..++.++..|. +..|++++|+|-+
T Consensus 75 ~dLk~~~~~ag~~~~~~vfll~d~q 99 (268)
T PF12780_consen 75 EDLKKALQKAGIKGKPTVFLLTDSQ 99 (268)
T ss_dssp HHHHHHHHHHHCS-S-EEEEEECCC
T ss_pred HHHHHHHHHHhccCCCeEEEecCcc
Confidence 56777777665 4568999998865
No 389
>PRK06696 uridine kinase; Validated
Probab=96.45 E-value=0.0055 Score=65.56 Aligned_cols=40 Identities=30% Similarity=0.432 Sum_probs=34.0
Q ss_pred CCCceeEecCCCCCChHHHHHHHHHHc---CCCEEEeechhhh
Q 035561 486 RAPRGVLIVGERGTGKTSLALAIAAEA---RVPVVNVEAQELE 525 (979)
Q Consensus 486 ~~P~gVLL~GPPGTGKTtLArAlA~el---g~~~i~Is~sdL~ 525 (979)
..|.-|.+.|++||||||+|+.|+..+ |.+++.++..++.
T Consensus 20 ~~~~iI~I~G~sgsGKSTlA~~L~~~l~~~g~~v~~~~~Ddf~ 62 (223)
T PRK06696 20 TRPLRVAIDGITASGKTTFADELAEEIKKRGRPVIRASIDDFH 62 (223)
T ss_pred CCceEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEecccccc
Confidence 346678899999999999999999998 6788888877764
No 390
>PRK13764 ATPase; Provisional
Probab=96.44 E-value=0.0044 Score=75.42 Aligned_cols=70 Identities=21% Similarity=0.315 Sum_probs=42.6
Q ss_pred CceeEecCCCCCChHHHHHHHHHHcC---CCEEEee-chhhhh----hhhcccchhhHHHHHHHHHhcCCeEEEEcCcc
Q 035561 488 PRGVLIVGERGTGKTSLALAIAAEAR---VPVVNVE-AQELEA----GLWVGQSASNVRELFQTARDLAPVIIFVEDFD 558 (979)
Q Consensus 488 P~gVLL~GPPGTGKTtLArAlA~elg---~~~i~Is-~sdL~~----~~~vG~~~~~Ir~lF~~A~~~aP~ILfIDEID 558 (979)
..++|++|||||||||++++++..+. ..+..+. ..++.. ..+.. .........+.+....|.++++||+-
T Consensus 257 ~~~ILIsG~TGSGKTTll~AL~~~i~~~~riV~TiEDp~El~~~~~i~q~~~-~~~~~~~~~~~lLR~rPD~IivGEiR 334 (602)
T PRK13764 257 AEGILIAGAPGAGKSTFAQALAEFYADMGKIVKTMESPRDLQVPPEITQYSK-LEGSMEETADILLLVRPDYTIYDEMR 334 (602)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHhhCCCEEEEECCCccccCCCcceEEee-ccccHHHHHHHHHhhCCCEEEECCCC
Confidence 46899999999999999999998874 2232331 112211 11110 00112233333455689999999984
No 391
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=96.44 E-value=0.008 Score=62.55 Aligned_cols=72 Identities=15% Similarity=0.088 Sum_probs=41.9
Q ss_pred CCCceeEecCCCCCChHHHHHHHHHHcCC--CEEEeechhh--hhhh-hcccchhhHHHHHHHHHhcCCeEEEEcCcc
Q 035561 486 RAPRGVLIVGERGTGKTSLALAIAAEARV--PVVNVEAQEL--EAGL-WVGQSASNVRELFQTARDLAPVIIFVEDFD 558 (979)
Q Consensus 486 ~~P~gVLL~GPPGTGKTtLArAlA~elg~--~~i~Is~sdL--~~~~-~vG~~~~~Ir~lF~~A~~~aP~ILfIDEID 558 (979)
+...-+.|.||.|+|||||++.+++.... --+.+++..+ .... ... +..+-|-.+..|-...|.++++||--
T Consensus 23 ~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~q~~~LS-gGq~qrv~laral~~~p~lllLDEPt 99 (177)
T cd03222 23 KEGEVIGIVGPNGTGKTTAVKILAGQLIPNGDNDEWDGITPVYKPQYIDLS-GGELQRVAIAAALLRNATFYLFDEPS 99 (177)
T ss_pred CCCCEEEEECCCCChHHHHHHHHHcCCCCCCcEEEECCEEEEEEcccCCCC-HHHHHHHHHHHHHhcCCCEEEEECCc
Confidence 34456889999999999999999986521 1122222111 0000 011 11123333555556679999999964
No 392
>PLN02840 tRNA dimethylallyltransferase
Probab=96.42 E-value=0.02 Score=67.10 Aligned_cols=37 Identities=24% Similarity=0.476 Sum_probs=32.3
Q ss_pred ceeEecCCCCCChHHHHHHHHHHcCCCEEEeechhhh
Q 035561 489 RGVLIVGERGTGKTSLALAIAAEARVPVVNVEAQELE 525 (979)
Q Consensus 489 ~gVLL~GPPGTGKTtLArAlA~elg~~~i~Is~sdL~ 525 (979)
.-++|.||+|+|||++|..+|..++.++++.+...+.
T Consensus 22 ~vi~I~GptgsGKTtla~~La~~~~~~iis~Ds~qvY 58 (421)
T PLN02840 22 KVIVISGPTGAGKSRLALELAKRLNGEIISADSVQVY 58 (421)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHCCCCeEecccccee
Confidence 4588999999999999999999999998888775554
No 393
>PRK10867 signal recognition particle protein; Provisional
Probab=96.42 E-value=0.03 Score=66.00 Aligned_cols=37 Identities=32% Similarity=0.467 Sum_probs=29.0
Q ss_pred CCCceeEecCCCCCChHHHHHHHHHHc----CCCEEEeech
Q 035561 486 RAPRGVLIVGERGTGKTSLALAIAAEA----RVPVVNVEAQ 522 (979)
Q Consensus 486 ~~P~gVLL~GPPGTGKTtLArAlA~el----g~~~i~Is~s 522 (979)
..|.-++++||+|+||||++..+|..+ |..+..+++.
T Consensus 98 ~~p~vI~~vG~~GsGKTTtaakLA~~l~~~~G~kV~lV~~D 138 (433)
T PRK10867 98 KPPTVIMMVGLQGAGKTTTAGKLAKYLKKKKKKKVLLVAAD 138 (433)
T ss_pred CCCEEEEEECCCCCcHHHHHHHHHHHHHHhcCCcEEEEEcc
Confidence 457889999999999999777777644 6667777764
No 394
>PRK14528 adenylate kinase; Provisional
Probab=96.41 E-value=0.0029 Score=66.03 Aligned_cols=30 Identities=20% Similarity=0.500 Sum_probs=26.9
Q ss_pred eeEecCCCCCChHHHHHHHHHHcCCCEEEe
Q 035561 490 GVLIVGERGTGKTSLALAIAAEARVPVVNV 519 (979)
Q Consensus 490 gVLL~GPPGTGKTtLArAlA~elg~~~i~I 519 (979)
.+++.||||+||||+|+.+|+.+|.+.+++
T Consensus 3 ~i~i~G~pGsGKtt~a~~la~~~~~~~is~ 32 (186)
T PRK14528 3 NIIFMGPPGAGKGTQAKILCERLSIPQIST 32 (186)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCCeeeC
Confidence 489999999999999999999999887653
No 395
>cd03243 ABC_MutS_homologs The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, and recognition of specific DNA stru
Probab=96.41 E-value=0.016 Score=61.00 Aligned_cols=22 Identities=32% Similarity=0.391 Sum_probs=20.1
Q ss_pred ceeEecCCCCCChHHHHHHHHH
Q 035561 489 RGVLIVGERGTGKTSLALAIAA 510 (979)
Q Consensus 489 ~gVLL~GPPGTGKTtLArAlA~ 510 (979)
.-++|+||.|+||||+.+.++.
T Consensus 30 ~~~~l~G~Ng~GKStll~~i~~ 51 (202)
T cd03243 30 RLLLITGPNMGGKSTYLRSIGL 51 (202)
T ss_pred eEEEEECCCCCccHHHHHHHHH
Confidence 4589999999999999999993
No 396
>PRK13900 type IV secretion system ATPase VirB11; Provisional
Probab=96.40 E-value=0.0044 Score=70.60 Aligned_cols=73 Identities=23% Similarity=0.349 Sum_probs=49.4
Q ss_pred CCCceeEecCCCCCChHHHHHHHHHHcC--CCEEEeec-hhhhh-----------hh-hcccchhhHHHHHHHHHhcCCe
Q 035561 486 RAPRGVLIVGERGTGKTSLALAIAAEAR--VPVVNVEA-QELEA-----------GL-WVGQSASNVRELFQTARDLAPV 550 (979)
Q Consensus 486 ~~P~gVLL~GPPGTGKTtLArAlA~elg--~~~i~Is~-sdL~~-----------~~-~vG~~~~~Ir~lF~~A~~~aP~ 550 (979)
+..+++|++|++||||||++++++.... ..++.+.- .++.- .. -.|...-...++++.+....|.
T Consensus 158 ~~~~nili~G~tgSGKTTll~aL~~~ip~~~ri~tiEd~~El~l~~~~n~~~~~~~~~~~~~~~~~~~~ll~~~LR~~PD 237 (332)
T PRK13900 158 ISKKNIIISGGTSTGKTTFTNAALREIPAIERLITVEDAREIVLSNHPNRVHLLASKGGQGRAKVTTQDLIEACLRLRPD 237 (332)
T ss_pred HcCCcEEEECCCCCCHHHHHHHHHhhCCCCCeEEEecCCCccccccCCCEEEEEecCCCCCcCcCcHHHHHHHHhccCCC
Confidence 3456899999999999999999999874 23333311 12210 00 0122233567788889899999
Q ss_pred EEEEcCcc
Q 035561 551 IIFVEDFD 558 (979)
Q Consensus 551 ILfIDEID 558 (979)
.|++.|+-
T Consensus 238 ~IivGEiR 245 (332)
T PRK13900 238 RIIVGELR 245 (332)
T ss_pred eEEEEecC
Confidence 99999984
No 397
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Probab=96.40 E-value=0.0069 Score=63.01 Aligned_cols=72 Identities=29% Similarity=0.480 Sum_probs=46.9
Q ss_pred CCCceeEecCCCCCChHHHHHHHHHHcC--CCEEEeech-hhhh--hhh----------cccchhhHHHHHHHHHhcCCe
Q 035561 486 RAPRGVLIVGERGTGKTSLALAIAAEAR--VPVVNVEAQ-ELEA--GLW----------VGQSASNVRELFQTARDLAPV 550 (979)
Q Consensus 486 ~~P~gVLL~GPPGTGKTtLArAlA~elg--~~~i~Is~s-dL~~--~~~----------vG~~~~~Ir~lF~~A~~~aP~ 550 (979)
+....+++.||+|+||||+++++++... ...+.+... ++.. ..+ .+.....+.+++..+....|.
T Consensus 23 ~~g~~i~I~G~tGSGKTTll~aL~~~i~~~~~~i~ied~~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~lR~~pd 102 (186)
T cd01130 23 EARKNILISGGTGSGKTTLLNALLAFIPPDERIITIEDTAELQLPHPNWVRLVTRPGNVEGSGEVTMADLLRSALRMRPD 102 (186)
T ss_pred hCCCEEEEECCCCCCHHHHHHHHHhhcCCCCCEEEECCccccCCCCCCEEEEEEecCCCCCCCccCHHHHHHHHhccCCC
Confidence 4456799999999999999999998763 223322211 1100 000 011223466777777788899
Q ss_pred EEEEcCc
Q 035561 551 IIFVEDF 557 (979)
Q Consensus 551 ILfIDEI 557 (979)
+++++|+
T Consensus 103 ~i~igEi 109 (186)
T cd01130 103 RIIVGEV 109 (186)
T ss_pred EEEEEcc
Confidence 9999998
No 398
>TIGR02788 VirB11 P-type DNA transfer ATPase VirB11. The VirB11 protein is found in the vir locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for DNA transfer. VirB11 is believed to be an ATPase. VirB11 is a homolog of the P-like conjugation system TrbB protein and the Flp pilus sytem protein TadA.
Probab=96.40 E-value=0.018 Score=64.84 Aligned_cols=75 Identities=19% Similarity=0.384 Sum_probs=49.1
Q ss_pred CCCCCceeEecCCCCCChHHHHHHHHHHcC--CCEEEeec-hhhhhh--hh---------cccchhhHHHHHHHHHhcCC
Q 035561 484 GARAPRGVLIVGERGTGKTSLALAIAAEAR--VPVVNVEA-QELEAG--LW---------VGQSASNVRELFQTARDLAP 549 (979)
Q Consensus 484 G~~~P~gVLL~GPPGTGKTtLArAlA~elg--~~~i~Is~-sdL~~~--~~---------vG~~~~~Ir~lF~~A~~~aP 549 (979)
.++...++++.||+|+||||+++++++... ...+.+.- .++... .. .+...-.+.+++..+....|
T Consensus 140 ~v~~~~~ili~G~tGsGKTTll~al~~~~~~~~~iv~ied~~El~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~Lr~~p 219 (308)
T TIGR02788 140 AIASRKNIIISGGTGSGKTTFLKSLVDEIPKDERIITIEDTREIFLPHPNYVHLFYSKGGQGLAKVTPKDLLQSCLRMRP 219 (308)
T ss_pred HhhCCCEEEEECCCCCCHHHHHHHHHccCCccccEEEEcCccccCCCCCCEEEEEecCCCCCcCccCHHHHHHHHhcCCC
Confidence 445567899999999999999999998763 22223321 111100 00 01122346677888888899
Q ss_pred eEEEEcCcc
Q 035561 550 VIIFVEDFD 558 (979)
Q Consensus 550 ~ILfIDEID 558 (979)
.+|++||+-
T Consensus 220 d~ii~gE~r 228 (308)
T TIGR02788 220 DRIILGELR 228 (308)
T ss_pred CeEEEeccC
Confidence 999999984
No 399
>PRK14527 adenylate kinase; Provisional
Probab=96.40 E-value=0.0026 Score=66.21 Aligned_cols=33 Identities=24% Similarity=0.360 Sum_probs=28.3
Q ss_pred CCCceeEecCCCCCChHHHHHHHHHHcCCCEEE
Q 035561 486 RAPRGVLIVGERGTGKTSLALAIAAEARVPVVN 518 (979)
Q Consensus 486 ~~P~gVLL~GPPGTGKTtLArAlA~elg~~~i~ 518 (979)
+.|.-++++||||+||||+|+.+|..++.+.++
T Consensus 4 ~~~~~i~i~G~pGsGKsT~a~~La~~~~~~~is 36 (191)
T PRK14527 4 TKNKVVIFLGPPGAGKGTQAERLAQELGLKKLS 36 (191)
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHhCCCCCC
Confidence 456679999999999999999999999876544
No 400
>TIGR02238 recomb_DMC1 meiotic recombinase Dmc1. This model describes DMC1, a subfamily of a larger family of DNA repair and recombination proteins. It is eukaryotic only and most closely related to eukaryotic RAD51. It also resembles archaeal RadA (TIGR02236) and RadB (TIGR02237) and bacterial RecA (TIGR02012). It has been characterized for human as a recombinase active only in meiosis.
Probab=96.40 E-value=0.009 Score=67.60 Aligned_cols=116 Identities=16% Similarity=0.203 Sum_probs=62.5
Q ss_pred CCCCCceeEecCCCCCChHHHHHHHHHHc---------CCCEEEeechh-hhhhhh------ccc---------------
Q 035561 484 GARAPRGVLIVGERGTGKTSLALAIAAEA---------RVPVVNVEAQE-LEAGLW------VGQ--------------- 532 (979)
Q Consensus 484 G~~~P~gVLL~GPPGTGKTtLArAlA~el---------g~~~i~Is~sd-L~~~~~------vG~--------------- 532 (979)
|++...-++++||||||||+++..+|-.. +..+++++... |..++. .|.
T Consensus 92 Gi~~G~iteI~G~~GsGKTql~lqla~~~~~~~~~gg~~~~vvYIdtE~~f~~eRi~~~a~~~g~d~~~~l~~i~~~~~~ 171 (313)
T TIGR02238 92 GIESMSITEVFGEFRCGKTQLSHTLCVTAQLPREMGGGNGKVAYIDTEGTFRPDRIRAIAERFGVDPDAVLDNILYARAY 171 (313)
T ss_pred CCcCCeEEEEECCCCCCcCHHHHHHHHHHhcchhhcCCCCeEEEEEcCCCCCHHHHHHHHHHcCCChHHhcCcEEEecCC
Confidence 45655668899999999999998877432 35677777654 110100 010
Q ss_pred chhhHHHHHH----HHHhcCCeEEEEcCccccccccccccCCCchhhHHHHHHHHhhhcccccCCeEEEEec
Q 035561 533 SASNVRELFQ----TARDLAPVIIFVEDFDLFAGVRGQFIHTKQQDHESFINQLLVELDGFEKQDGVVLMAT 600 (979)
Q Consensus 533 ~~~~Ir~lF~----~A~~~aP~ILfIDEIDaL~~~r~~~~~~~~~~~~~iln~LL~~LDg~~~~~~ViVIAT 600 (979)
......+++. ......+.+|+||-+-++.+..-.. .+.-....+.+++++..|..+-...++.|+.|
T Consensus 172 ~~e~~~~~l~~l~~~i~~~~~~LvVIDSisal~r~~~~~-~g~~~~r~~~l~~~~~~L~~la~~~~vavvit 242 (313)
T TIGR02238 172 TSEHQMELLDYLAAKFSEEPFRLLIVDSIMALFRVDFSG-RGELSERQQKLAQMLSRLNKISEEFNVAVFVT 242 (313)
T ss_pred CHHHHHHHHHHHHHHhhccCCCEEEEEcchHhhhhhccC-ccchHHHHHHHHHHHHHHHHHHHHcCcEEEEE
Confidence 0111112222 2233468999999999886532110 11112223345666655555544445555544
No 401
>TIGR01360 aden_kin_iso1 adenylate kinase, isozyme 1 subfamily. Members of this family are adenylate kinase, EC 2.7.4.3. This clade is found only in eukaryotes and includes human adenylate kinase isozyme 1 (myokinase). Within the adenylate kinase superfamily, this set appears specifically closely related to a subfamily of eukaryotic UMP-CMP kinases (TIGR01359), rather than to the large clade of bacterial, archaeal, and eukaryotic adenylate kinase family members in TIGR01351.
Probab=96.38 E-value=0.0029 Score=64.80 Aligned_cols=34 Identities=24% Similarity=0.322 Sum_probs=27.7
Q ss_pred eeEecCCCCCChHHHHHHHHHHcCCCEEEeechhhh
Q 035561 490 GVLIVGERGTGKTSLALAIAAEARVPVVNVEAQELE 525 (979)
Q Consensus 490 gVLL~GPPGTGKTtLArAlA~elg~~~i~Is~sdL~ 525 (979)
-+++.|||||||||+++.+++.+|.+. +++.+++
T Consensus 5 ii~i~G~~GsGKsTl~~~l~~~~g~~~--~~~g~~~ 38 (188)
T TIGR01360 5 IIFIVGGPGSGKGTQCEKIVEKYGFTH--LSTGDLL 38 (188)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCcE--EeHHHHH
Confidence 478999999999999999999998664 4554543
No 402
>PRK02496 adk adenylate kinase; Provisional
Probab=96.37 E-value=0.0027 Score=65.46 Aligned_cols=30 Identities=23% Similarity=0.550 Sum_probs=26.4
Q ss_pred eeEecCCCCCChHHHHHHHHHHcCCCEEEe
Q 035561 490 GVLIVGERGTGKTSLALAIAAEARVPVVNV 519 (979)
Q Consensus 490 gVLL~GPPGTGKTtLArAlA~elg~~~i~I 519 (979)
-+++.||||+||||+|+.+|..++.+.+.+
T Consensus 3 ~i~i~G~pGsGKst~a~~la~~~~~~~i~~ 32 (184)
T PRK02496 3 RLIFLGPPGAGKGTQAVVLAEHLHIPHIST 32 (184)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCcEEEh
Confidence 388999999999999999999998876544
No 403
>TIGR02525 plasmid_TraJ plasmid transfer ATPase TraJ. Members of this protein family are predicted ATPases associated with plasmid transfer loci in bacteria. This family is most similar to the DotB ATPase of a type-IV secretion-like system of obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii (TIGR02524).
Probab=96.35 E-value=0.01 Score=68.57 Aligned_cols=69 Identities=29% Similarity=0.313 Sum_probs=46.3
Q ss_pred eeEecCCCCCChHHHHHHHHHHcC-----CCEEEeech-hhhh----------hhhcccchhhHHHHHHHHHhcCCeEEE
Q 035561 490 GVLIVGERGTGKTSLALAIAAEAR-----VPVVNVEAQ-ELEA----------GLWVGQSASNVRELFQTARDLAPVIIF 553 (979)
Q Consensus 490 gVLL~GPPGTGKTtLArAlA~elg-----~~~i~Is~s-dL~~----------~~~vG~~~~~Ir~lF~~A~~~aP~ILf 553 (979)
.+|++||+||||||++++++.... ..++.+.-. ++.- ..-+|............+....|.+|+
T Consensus 151 lilI~G~TGSGKTT~l~al~~~i~~~~~~~~IvtiEdp~E~~~~~~~~~~~~~q~evg~~~~~~~~~l~~aLR~~PD~I~ 230 (372)
T TIGR02525 151 LGLICGETGSGKSTLAASIYQHCGETYPDRKIVTYEDPIEYILGSPDDLLPPAQSQIGRDVDSFANGIRLALRRAPKIIG 230 (372)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHhcCCCceEEEEecCchhccCCCceeecccccccCCCccCHHHHHHHhhccCCCEEe
Confidence 589999999999999999988762 345544321 2110 011232233455667777778999999
Q ss_pred EcCcc
Q 035561 554 VEDFD 558 (979)
Q Consensus 554 IDEID 558 (979)
+.|+-
T Consensus 231 vGEiR 235 (372)
T TIGR02525 231 VGEIR 235 (372)
T ss_pred eCCCC
Confidence 99984
No 404
>TIGR00152 dephospho-CoA kinase. This model produces scores in the range of 0-25 bits against adenylate, guanylate, uridine, and thymidylate kinases.
Probab=96.34 E-value=0.0053 Score=63.79 Aligned_cols=33 Identities=27% Similarity=0.541 Sum_probs=27.0
Q ss_pred eEecCCCCCChHHHHHHHHHHcCCCEEEeechhhh
Q 035561 491 VLIVGERGTGKTSLALAIAAEARVPVVNVEAQELE 525 (979)
Q Consensus 491 VLL~GPPGTGKTtLArAlA~elg~~~i~Is~sdL~ 525 (979)
|.|+|.+||||||+++.++...+.+++ ++.++.
T Consensus 2 i~itG~~gsGKst~~~~l~~~~~~~~i--~~D~~~ 34 (188)
T TIGR00152 2 IGLTGGIGSGKSTVANYLADKYHFPVI--DADKIA 34 (188)
T ss_pred EEEECCCCCCHHHHHHHHHHhcCCeEE--eCCHHH
Confidence 679999999999999999998767765 444443
No 405
>cd03227 ABC_Class2 ABC-type Class 2 contains systems involved in cellular processes other than transport. These families are characterised by the fact that the ABC subunit is made up of duplicated, fused ABC modules (ABC2). No known transmembrane proteins or domains are associated with these proteins.
Probab=96.34 E-value=0.016 Score=59.05 Aligned_cols=24 Identities=29% Similarity=0.434 Sum_probs=20.7
Q ss_pred CceeEecCCCCCChHHHHHHHHHH
Q 035561 488 PRGVLIVGERGTGKTSLALAIAAE 511 (979)
Q Consensus 488 P~gVLL~GPPGTGKTtLArAlA~e 511 (979)
|+..+++||.|+|||++.++++-.
T Consensus 21 ~~~~~i~G~NgsGKS~~l~~i~~~ 44 (162)
T cd03227 21 GSLTIITGPNGSGKSTILDAIGLA 44 (162)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHH
Confidence 457899999999999999998653
No 406
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=96.33 E-value=0.032 Score=65.78 Aligned_cols=110 Identities=17% Similarity=0.199 Sum_probs=58.5
Q ss_pred CceeEecCCCCCChHHHHHHHHHHc-----CCCEEEeechhhhh------hh---------hcccchhhHHHHHHHHHhc
Q 035561 488 PRGVLIVGERGTGKTSLALAIAAEA-----RVPVVNVEAQELEA------GL---------WVGQSASNVRELFQTARDL 547 (979)
Q Consensus 488 P~gVLL~GPPGTGKTtLArAlA~el-----g~~~i~Is~sdL~~------~~---------~vG~~~~~Ir~lF~~A~~~ 547 (979)
++.++|.||+|+||||++..+|..+ +..+..+++...-. .. +.......+........
T Consensus 221 ~~~i~~vGptGvGKTTt~~kLA~~~~~~~~g~~V~li~~D~~r~~a~eqL~~~a~~~~vp~~~~~~~~~l~~~l~~~~-- 298 (424)
T PRK05703 221 GGVVALVGPTGVGKTTTLAKLAARYALLYGKKKVALITLDTYRIGAVEQLKTYAKIMGIPVEVVYDPKELAKALEQLR-- 298 (424)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEECCccHHHHHHHHHHHHHHhCCceEccCCHHhHHHHHHHhC--
Confidence 4578999999999999888887654 34555565543210 00 01112222333232222
Q ss_pred CCeEEEEcCccccccccccccCCCchhhHHHHHHHHhhhccc-ccCCeEEEEecccchhhchhhh
Q 035561 548 APVIIFVEDFDLFAGVRGQFIHTKQQDHESFINQLLVELDGF-EKQDGVVLMATTRNIKQIDEAL 611 (979)
Q Consensus 548 aP~ILfIDEIDaL~~~r~~~~~~~~~~~~~iln~LL~~LDg~-~~~~~ViVIATTN~pe~LDpAL 611 (979)
...+|+||..... ......+..|...++.. ......+|+.+|..+..+.+.+
T Consensus 299 ~~DlVlIDt~G~~------------~~d~~~~~~L~~ll~~~~~~~~~~LVl~a~~~~~~l~~~~ 351 (424)
T PRK05703 299 DCDVILIDTAGRS------------QRDKRLIEELKALIEFSGEPIDVYLVLSATTKYEDLKDIY 351 (424)
T ss_pred CCCEEEEeCCCCC------------CCCHHHHHHHHHHHhccCCCCeEEEEEECCCCHHHHHHHH
Confidence 3578999986421 11122233333333311 2234567777777777777654
No 407
>smart00534 MUTSac ATPase domain of DNA mismatch repair MUTS family.
Probab=96.33 E-value=0.017 Score=60.10 Aligned_cols=20 Identities=25% Similarity=0.395 Sum_probs=18.5
Q ss_pred eEecCCCCCChHHHHHHHHH
Q 035561 491 VLIVGERGTGKTSLALAIAA 510 (979)
Q Consensus 491 VLL~GPPGTGKTtLArAlA~ 510 (979)
++|+||.|+|||++.|.++-
T Consensus 2 ~~ltG~N~~GKst~l~~i~~ 21 (185)
T smart00534 2 VIITGPNMGGKSTYLRQVGL 21 (185)
T ss_pred EEEECCCCCcHHHHHHHHHH
Confidence 68999999999999999983
No 408
>PF13521 AAA_28: AAA domain; PDB: 1LW7_A.
Probab=96.32 E-value=0.0047 Score=62.44 Aligned_cols=34 Identities=44% Similarity=0.547 Sum_probs=24.3
Q ss_pred eEecCCCCCChHHHHHHHHHHcCCCEEEeechhhh
Q 035561 491 VLIVGERGTGKTSLALAIAAEARVPVVNVEAQELE 525 (979)
Q Consensus 491 VLL~GPPGTGKTtLArAlA~elg~~~i~Is~sdL~ 525 (979)
|.|+|+||||||||++++++. |.+++.=.+..+.
T Consensus 2 I~i~G~~stGKTTL~~~L~~~-g~~~v~E~ar~~~ 35 (163)
T PF13521_consen 2 IVITGGPSTGKTTLIEALAAR-GYPVVPEYAREII 35 (163)
T ss_dssp EEEE--TTSHHHHHHHHHHHH-T-EEE--TTHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHc-CCeEEeecHHHHH
Confidence 789999999999999999999 8887754444444
No 409
>TIGR02782 TrbB_P P-type conjugative transfer ATPase TrbB. The TrbB protein is found in the trb locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for plasmid conjugative transfer. TrbB is a homolog of the vir system VirB11 ATPase, and the Flp pilus sytem ATPase TadA.
Probab=96.32 E-value=0.0061 Score=68.50 Aligned_cols=71 Identities=34% Similarity=0.473 Sum_probs=48.6
Q ss_pred CceeEecCCCCCChHHHHHHHHHHc-----CCCEEEeech-hhhh------hhhcccchhhHHHHHHHHHhcCCeEEEEc
Q 035561 488 PRGVLIVGERGTGKTSLALAIAAEA-----RVPVVNVEAQ-ELEA------GLWVGQSASNVRELFQTARDLAPVIIFVE 555 (979)
Q Consensus 488 P~gVLL~GPPGTGKTtLArAlA~el-----g~~~i~Is~s-dL~~------~~~vG~~~~~Ir~lF~~A~~~aP~ILfID 555 (979)
.+++|++||+|+||||+++++++.. +..++.+.-. ++.. ....+.....+.+++..+....|..|++.
T Consensus 132 ~~~ilI~G~tGSGKTTll~al~~~i~~~~~~~ri~tiEd~~El~~~~~~~v~~~~~~~~~~~~~~l~~aLR~~pD~iivG 211 (299)
T TIGR02782 132 RKNILVVGGTGSGKTTLANALLAEIAKNDPTDRVVIIEDTRELQCAAPNVVQLRTSDDAISMTRLLKATLRLRPDRIIVG 211 (299)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHhhccCCCceEEEECCchhhcCCCCCEEEEEecCCCCCHHHHHHHHhcCCCCEEEEe
Confidence 4679999999999999999999886 2334433221 2110 00112222267788888888999999999
Q ss_pred Ccc
Q 035561 556 DFD 558 (979)
Q Consensus 556 EID 558 (979)
|+-
T Consensus 212 EiR 214 (299)
T TIGR02782 212 EVR 214 (299)
T ss_pred ccC
Confidence 983
No 410
>COG2805 PilT Tfp pilus assembly protein, pilus retraction ATPase PilT [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=96.31 E-value=0.0076 Score=67.12 Aligned_cols=71 Identities=23% Similarity=0.402 Sum_probs=49.0
Q ss_pred Cce-eEecCCCCCChHHHHHHHHHHcC----CCEEEe---------echhhhhhhhcccchhhHHHHHHHHHhcCCeEEE
Q 035561 488 PRG-VLIVGERGTGKTSLALAIAAEAR----VPVVNV---------EAQELEAGLWVGQSASNVRELFQTARDLAPVIIF 553 (979)
Q Consensus 488 P~g-VLL~GPPGTGKTtLArAlA~elg----~~~i~I---------s~sdL~~~~~vG~~~~~Ir~lF~~A~~~aP~ILf 553 (979)
|+| ||++||.||||||...++-...| .+.+.+ |-..++..+-+|..........+.|-...|.||+
T Consensus 124 ~~GLILVTGpTGSGKSTTlAamId~iN~~~~~HIlTIEDPIE~vh~skkslI~QREvG~dT~sF~~aLraALReDPDVIl 203 (353)
T COG2805 124 PRGLILVTGPTGSGKSTTLAAMIDYINKHKAKHILTIEDPIEYVHESKKSLINQREVGRDTLSFANALRAALREDPDVIL 203 (353)
T ss_pred CCceEEEeCCCCCcHHHHHHHHHHHHhccCCcceEEecCchHhhhcchHhhhhHHHhcccHHHHHHHHHHHhhcCCCEEE
Confidence 444 67889999999998888888775 334433 2233333334565555666667777777899999
Q ss_pred EcCcc
Q 035561 554 VEDFD 558 (979)
Q Consensus 554 IDEID 558 (979)
+-|+-
T Consensus 204 vGEmR 208 (353)
T COG2805 204 VGEMR 208 (353)
T ss_pred Eeccc
Confidence 99974
No 411
>TIGR01351 adk adenylate kinases. Adenylate kinase (EC 2.7.4.3) converts ATP + AMP to ADP + ADP, that is, uses ATP as a phosphate donor for AMP. Most members of this family are known or believed to be adenylate kinase. However, some members accept other nucleotide triphosphates as donors, may be unable to use ATP, and may fail to complement adenylate kinase mutants. An example of a nucleoside-triphosphate--adenylate kinase (EC 2.7.4.10) is a GTP:AMP phosphotransferase. This family is designated subfamily rather than equivalog for this reason.
Probab=96.30 E-value=0.0032 Score=66.67 Aligned_cols=33 Identities=27% Similarity=0.497 Sum_probs=27.9
Q ss_pred eEecCCCCCChHHHHHHHHHHcCCCEEEeechhhh
Q 035561 491 VLIVGERGTGKTSLALAIAAEARVPVVNVEAQELE 525 (979)
Q Consensus 491 VLL~GPPGTGKTtLArAlA~elg~~~i~Is~sdL~ 525 (979)
|++.||||+||||+|+.+|..+|++.++ ..+++
T Consensus 2 I~i~G~pGsGKsT~a~~La~~~g~~~is--~gdll 34 (210)
T TIGR01351 2 LVLLGPPGSGKGTQAKRIAEKYGLPHIS--TGDLL 34 (210)
T ss_pred EEEECCCCCCHHHHHHHHHHHcCCCeee--hhHHH
Confidence 7899999999999999999999876654 44554
No 412
>smart00487 DEXDc DEAD-like helicases superfamily.
Probab=96.29 E-value=0.019 Score=57.54 Aligned_cols=33 Identities=24% Similarity=0.345 Sum_probs=22.9
Q ss_pred ceeEecCCCCCChHH-HHHHHHHHcC----CCEEEeec
Q 035561 489 RGVLIVGERGTGKTS-LALAIAAEAR----VPVVNVEA 521 (979)
Q Consensus 489 ~gVLL~GPPGTGKTt-LArAlA~elg----~~~i~Is~ 521 (979)
+++++.||+|||||+ ++..+...+. ..++.+..
T Consensus 25 ~~~~i~~~~GsGKT~~~~~~~~~~~~~~~~~~~l~~~p 62 (201)
T smart00487 25 RDVILAAPTGSGKTLAALLPALEALKRGKGKRVLVLVP 62 (201)
T ss_pred CcEEEECCCCCchhHHHHHHHHHHhcccCCCcEEEEeC
Confidence 579999999999999 5555555443 33555544
No 413
>PTZ00035 Rad51 protein; Provisional
Probab=96.29 E-value=0.012 Score=67.32 Aligned_cols=118 Identities=14% Similarity=0.144 Sum_probs=63.4
Q ss_pred CCCCCceeEecCCCCCChHHHHHHHHHHcC---------CCEEEeechhhhhhh-------hccc---------------
Q 035561 484 GARAPRGVLIVGERGTGKTSLALAIAAEAR---------VPVVNVEAQELEAGL-------WVGQ--------------- 532 (979)
Q Consensus 484 G~~~P~gVLL~GPPGTGKTtLArAlA~elg---------~~~i~Is~sdL~~~~-------~vG~--------------- 532 (979)
|++...-+.|+||||||||+++..+|.... -.+++++...-+... -.+.
T Consensus 114 Gi~~G~iteI~G~~GsGKT~l~~~l~~~~qlp~~~gg~~g~vvyIdtE~~f~~eri~~ia~~~g~~~~~~l~nI~~~~~~ 193 (337)
T PTZ00035 114 GIETGSITELFGEFRTGKTQLCHTLCVTCQLPIEQGGGEGKVLYIDTEGTFRPERIVQIAERFGLDPEDVLDNIAYARAY 193 (337)
T ss_pred CCCCCeEEEEECCCCCchhHHHHHHHHHhccccccCCCCceEEEEEccCCCCHHHHHHHHHHhCCChHhHhhceEEEccC
Confidence 556566688999999999999999886432 356677654321000 0000
Q ss_pred -ch---hhHHHHHHHHHhcCCeEEEEcCccccccccccccCCCchhhHHHHHHHHhhhcccccCCeEEEEecccc
Q 035561 533 -SA---SNVRELFQTARDLAPVIIFVEDFDLFAGVRGQFIHTKQQDHESFINQLLVELDGFEKQDGVVLMATTRN 603 (979)
Q Consensus 533 -~~---~~Ir~lF~~A~~~aP~ILfIDEIDaL~~~r~~~~~~~~~~~~~iln~LL~~LDg~~~~~~ViVIATTN~ 603 (979)
.+ ..+..+........+.+|+||-|-++.+..-.. .+......+.+.+++..|..+....++.|+.| |.
T Consensus 194 ~~e~~~~~l~~~~~~l~~~~~~lvVIDSital~r~~~~~-~~~~~~r~~~l~~~~~~L~~la~~~~vavvvt-Nq 266 (337)
T PTZ00035 194 NHEHQMQLLSQAAAKMAEERFALLIVDSATALFRVDYSG-RGELAERQQHLGKFLRALQKLADEFNVAVVIT-NQ 266 (337)
T ss_pred CHHHHHHHHHHHHHHhhccCccEEEEECcHHhhhhhccC-cccHHHHHHHHHHHHHHHHHHHHHcCcEEEEe-cc
Confidence 00 111112222233468999999999876431110 11112234446666665555444445555544 43
No 414
>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=96.27 E-value=0.019 Score=59.73 Aligned_cols=26 Identities=23% Similarity=0.226 Sum_probs=21.5
Q ss_pred CCCceeEecCCCCCChHHHHHHHHHH
Q 035561 486 RAPRGVLIVGERGTGKTSLALAIAAE 511 (979)
Q Consensus 486 ~~P~gVLL~GPPGTGKTtLArAlA~e 511 (979)
+...-+.|.||+|+|||||.++++..
T Consensus 19 ~~G~~~~l~G~nG~GKSTLl~~il~~ 44 (176)
T cd03238 19 PLNVLVVVTGVSGSGKSTLVNEGLYA 44 (176)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhhc
Confidence 44455889999999999999999753
No 415
>PF06414 Zeta_toxin: Zeta toxin; InterPro: IPR010488 This entry represents a domain originally identified in bacterial zeta toxin proteins, where it comprises the whole protein []. It has subsequently been found in a number of other proteins, such as polynucleotide kinase and 2',3'-cyclic-nucleotide 3'-phosphodiesterase. It appears to function as a kinase domain [, ].; GO: 0005524 ATP binding, 0016301 kinase activity; PDB: 2P5T_H 1GVN_B 3Q8X_D.
Probab=96.25 E-value=0.011 Score=62.14 Aligned_cols=40 Identities=30% Similarity=0.515 Sum_probs=32.1
Q ss_pred CCCceeEecCCCCCChHHHHHHHHHHc-CCCEEEeechhhh
Q 035561 486 RAPRGVLIVGERGTGKTSLALAIAAEA-RVPVVNVEAQELE 525 (979)
Q Consensus 486 ~~P~gVLL~GPPGTGKTtLArAlA~el-g~~~i~Is~sdL~ 525 (979)
..|.-+++.|+||+|||+++..+..++ +-.++.++..++.
T Consensus 13 ~~P~~~i~aG~~GsGKSt~~~~~~~~~~~~~~v~i~~D~~r 53 (199)
T PF06414_consen 13 EKPTLIIIAGQPGSGKSTLARQLLEEFGGGGIVVIDADEFR 53 (199)
T ss_dssp SS-EEEEEES-TTSTTHHHHHHHHHHT-TT-SEEE-GGGGG
T ss_pred cCCEEEEEeCCCCCCHHHHHHHhhhhccCCCeEEEehHHHH
Confidence 568889999999999999999999998 7888889988764
No 416
>PLN03187 meiotic recombination protein DMC1 homolog; Provisional
Probab=96.25 E-value=0.013 Score=67.18 Aligned_cols=116 Identities=16% Similarity=0.135 Sum_probs=62.0
Q ss_pred CCCCCceeEecCCCCCChHHHHHHHHHHc---------CCCEEEeechh-hhhhhh------cccc--------------
Q 035561 484 GARAPRGVLIVGERGTGKTSLALAIAAEA---------RVPVVNVEAQE-LEAGLW------VGQS-------------- 533 (979)
Q Consensus 484 G~~~P~gVLL~GPPGTGKTtLArAlA~el---------g~~~i~Is~sd-L~~~~~------vG~~-------------- 533 (979)
|++...-..|+||||||||+++..+|-.. +..+++++... |..++. .|..
T Consensus 122 Gi~~G~ItEI~G~~GsGKTql~lqlav~~qlp~~~gg~~~~vvyIdTE~tF~peRl~~ia~~~g~d~~~~l~~I~~~~~~ 201 (344)
T PLN03187 122 GIETRCITEAFGEFRSGKTQLAHTLCVTTQLPTEMGGGNGKVAYIDTEGTFRPDRIVPIAERFGMDADAVLDNIIYARAY 201 (344)
T ss_pred CCCCCeEEEEecCCCCChhHHHHHHHHHHhcchhhCCCCceEEEEEcCCCCCHHHHHHHHHHcCCChhhhcCeEEEecCC
Confidence 45555667899999999999999887433 24677777643 110000 0100
Q ss_pred -h----hhHHHHHHHHHhcCCeEEEEcCccccccccccccCCCchhhHHHHHHHHhhhcccccCCeEEEEec
Q 035561 534 -A----SNVRELFQTARDLAPVIIFVEDFDLFAGVRGQFIHTKQQDHESFINQLLVELDGFEKQDGVVLMAT 600 (979)
Q Consensus 534 -~----~~Ir~lF~~A~~~aP~ILfIDEIDaL~~~r~~~~~~~~~~~~~iln~LL~~LDg~~~~~~ViVIAT 600 (979)
. ..+..+-.......+.+|+||-|-++.+..-.. .+......+.+++++..|..+-...++.|+.|
T Consensus 202 ~~e~~~~~l~~l~~~i~~~~~~LvVIDSital~r~~~~~-rg~l~~rq~~L~~~~~~L~~lA~~~~vavvvT 272 (344)
T PLN03187 202 TYEHQYNLLLGLAAKMAEEPFRLLIVDSVIALFRVDFTG-RGELAERQQKLAQMLSRLTKIAEEFNVAVYMT 272 (344)
T ss_pred CHHHHHHHHHHHHHHHHhcCCCEEEEeCcHHhhhccccC-ccchHHHHHHHHHHHHHHHHHHHHcCCEEEEE
Confidence 0 111122122234468999999998886532110 11112233446666655554433445555544
No 417
>COG5271 MDN1 AAA ATPase containing von Willebrand factor type A (vWA) domain [General function prediction only]
Probab=96.24 E-value=0.012 Score=76.12 Aligned_cols=137 Identities=22% Similarity=0.266 Sum_probs=93.1
Q ss_pred ceeEecCCCCCChHHHHHHHHHHcCCCEEEeechhhhh-----hhhcccchh---hHHHHHHHHHhcCCeEEEEcCcccc
Q 035561 489 RGVLIVGERGTGKTSLALAIAAEARVPVVNVEAQELEA-----GLWVGQSAS---NVRELFQTARDLAPVIIFVEDFDLF 560 (979)
Q Consensus 489 ~gVLL~GPPGTGKTtLArAlA~elg~~~i~Is~sdL~~-----~~~vG~~~~---~Ir~lF~~A~~~aP~ILfIDEIDaL 560 (979)
..+||.||..+|||++...+|.+.|-.|+.|+-.+... +.|+..... .-..+.-.|.+ ..--|++||+. |
T Consensus 889 fP~LiQGpTSSGKTSMI~yla~~tghkfVRINNHEHTdlqeYiGTyvTdd~G~lsFkEGvLVeAlR-~GyWIVLDELN-L 966 (4600)
T COG5271 889 FPLLIQGPTSSGKTSMILYLARETGHKFVRINNHEHTDLQEYIGTYVTDDDGSLSFKEGVLVEALR-RGYWIVLDELN-L 966 (4600)
T ss_pred CcEEEecCCCCCcchHHHHHHHHhCccEEEecCcccchHHHHhhceeecCCCceeeehhHHHHHHh-cCcEEEeeccc-c
Confidence 34999999999999999999999999999998754321 223322211 12233444443 34678899985 3
Q ss_pred ccccccccCCCchhhHHHHHHHHhhhcc---------cccCCeEEEEecccchh------hchhhhhcCCceeeEeccCC
Q 035561 561 AGVRGQFIHTKQQDHESFINQLLVELDG---------FEKQDGVVLMATTRNIK------QIDEALQRPGRMDRIFNLQK 625 (979)
Q Consensus 561 ~~~r~~~~~~~~~~~~~iln~LL~~LDg---------~~~~~~ViVIATTN~pe------~LDpALlRpgRFd~~I~~~~ 625 (979)
++ .+.-..+|.||.--.. ..+++.+.++||-|.|- .|..|++. || ..++|..
T Consensus 967 Ap----------TDVLEaLNRLLDDNRelfIPETqevV~PHp~F~lFATQNppg~YgGRK~LSrAFRN--RF-lE~hFdd 1033 (4600)
T COG5271 967 AP----------TDVLEALNRLLDDNRELFIPETQEVVVPHPNFRLFATQNPPGGYGGRKGLSRAFRN--RF-LEMHFDD 1033 (4600)
T ss_pred Cc----------HHHHHHHHHhhccccceecCCcceeeccCCCeeEEeecCCCccccchHHHHHHHHh--hh-Hhhhccc
Confidence 22 2344556666532111 23456788999999764 57889998 99 5788888
Q ss_pred CCHHHHHHHHHHHHH
Q 035561 626 PTQSEREKILRIAAQ 640 (979)
Q Consensus 626 Pd~eeR~~IL~~~l~ 640 (979)
-..++...||+..++
T Consensus 1034 ipedEle~ILh~rc~ 1048 (4600)
T COG5271 1034 IPEDELEEILHGRCE 1048 (4600)
T ss_pred CcHHHHHHHHhccCc
Confidence 888999999987654
No 418
>PRK04328 hypothetical protein; Provisional
Probab=96.24 E-value=0.024 Score=61.98 Aligned_cols=38 Identities=29% Similarity=0.326 Sum_probs=30.2
Q ss_pred CCCCCceeEecCCCCCChHHHHHHHHHH---cCCCEEEeec
Q 035561 484 GARAPRGVLIVGERGTGKTSLALAIAAE---ARVPVVNVEA 521 (979)
Q Consensus 484 G~~~P~gVLL~GPPGTGKTtLArAlA~e---lg~~~i~Is~ 521 (979)
|++....+|++||||||||+++..++.+ .|.+.++++.
T Consensus 19 Gip~gs~ili~G~pGsGKT~l~~~fl~~~~~~ge~~lyis~ 59 (249)
T PRK04328 19 GIPERNVVLLSGGPGTGKSIFSQQFLWNGLQMGEPGVYVAL 59 (249)
T ss_pred CCcCCcEEEEEcCCCCCHHHHHHHHHHHHHhcCCcEEEEEe
Confidence 5677788999999999999998876654 3667777765
No 419
>PRK00279 adk adenylate kinase; Reviewed
Probab=96.24 E-value=0.0038 Score=66.26 Aligned_cols=33 Identities=24% Similarity=0.482 Sum_probs=27.8
Q ss_pred eEecCCCCCChHHHHHHHHHHcCCCEEEeechhhh
Q 035561 491 VLIVGERGTGKTSLALAIAAEARVPVVNVEAQELE 525 (979)
Q Consensus 491 VLL~GPPGTGKTtLArAlA~elg~~~i~Is~sdL~ 525 (979)
|+++||||+||||+|+.+|..+|.+.++ ..+++
T Consensus 3 I~v~G~pGsGKsT~a~~la~~~~~~~is--~~dl~ 35 (215)
T PRK00279 3 LILLGPPGAGKGTQAKFIAEKYGIPHIS--TGDML 35 (215)
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCcEEE--CCccH
Confidence 8999999999999999999999976655 44443
No 420
>COG4088 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=96.23 E-value=0.014 Score=62.06 Aligned_cols=23 Identities=39% Similarity=0.693 Sum_probs=21.6
Q ss_pred eEecCCCCCChHHHHHHHHHHcC
Q 035561 491 VLIVGERGTGKTSLALAIAAEAR 513 (979)
Q Consensus 491 VLL~GPPGTGKTtLArAlA~elg 513 (979)
++|+|+||+|||++|+-+|+++.
T Consensus 4 iIlTGyPgsGKTtfakeLak~L~ 26 (261)
T COG4088 4 IILTGYPGSGKTTFAKELAKELR 26 (261)
T ss_pred EEEecCCCCCchHHHHHHHHHHH
Confidence 78999999999999999999983
No 421
>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.22 E-value=0.022 Score=58.27 Aligned_cols=28 Identities=29% Similarity=0.380 Sum_probs=24.2
Q ss_pred CCCCceeEecCCCCCChHHHHHHHHHHc
Q 035561 485 ARAPRGVLIVGERGTGKTSLALAIAAEA 512 (979)
Q Consensus 485 ~~~P~gVLL~GPPGTGKTtLArAlA~el 512 (979)
+++..-+.|.||+|+|||||.+.+++..
T Consensus 25 i~~G~~~~l~G~nGsGKstLl~~i~G~~ 52 (171)
T cd03228 25 IKPGEKVAIVGPSGSGKSTLLKLLLRLY 52 (171)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHHcCC
Confidence 4455678999999999999999999975
No 422
>PRK08154 anaerobic benzoate catabolism transcriptional regulator; Reviewed
Probab=96.18 E-value=0.0078 Score=67.85 Aligned_cols=36 Identities=36% Similarity=0.610 Sum_probs=31.8
Q ss_pred CCCCceeEecCCCCCChHHHHHHHHHHcCCCEEEee
Q 035561 485 ARAPRGVLIVGERGTGKTSLALAIAAEARVPVVNVE 520 (979)
Q Consensus 485 ~~~P~gVLL~GPPGTGKTtLArAlA~elg~~~i~Is 520 (979)
.+++..|.|.|+||||||++++.+|..+|.+++.++
T Consensus 130 ~~~~~~I~l~G~~GsGKStvg~~La~~Lg~~~id~D 165 (309)
T PRK08154 130 AARRRRIALIGLRGAGKSTLGRMLAARLGVPFVELN 165 (309)
T ss_pred ccCCCEEEEECCCCCCHHHHHHHHHHHcCCCEEeHH
Confidence 455678999999999999999999999999999544
No 423
>PRK01184 hypothetical protein; Provisional
Probab=96.18 E-value=0.0041 Score=64.11 Aligned_cols=33 Identities=33% Similarity=0.484 Sum_probs=27.0
Q ss_pred eeEecCCCCCChHHHHHHHHHHcCCCEEEeechhhh
Q 035561 490 GVLIVGERGTGKTSLALAIAAEARVPVVNVEAQELE 525 (979)
Q Consensus 490 gVLL~GPPGTGKTtLArAlA~elg~~~i~Is~sdL~ 525 (979)
-|+|+|||||||||+++ +++++|.+++.. ++++
T Consensus 3 ~i~l~G~~GsGKsT~a~-~~~~~g~~~i~~--~d~l 35 (184)
T PRK01184 3 IIGVVGMPGSGKGEFSK-IAREMGIPVVVM--GDVI 35 (184)
T ss_pred EEEEECCCCCCHHHHHH-HHHHcCCcEEEh--hHHH
Confidence 47899999999999998 789999888654 4544
No 424
>PRK13851 type IV secretion system protein VirB11; Provisional
Probab=96.17 E-value=0.0057 Score=70.00 Aligned_cols=75 Identities=20% Similarity=0.339 Sum_probs=50.0
Q ss_pred CCCCCceeEecCCCCCChHHHHHHHHHHcCC--CEEEeec-hhhhhh--h-----h----cccchhhHHHHHHHHHhcCC
Q 035561 484 GARAPRGVLIVGERGTGKTSLALAIAAEARV--PVVNVEA-QELEAG--L-----W----VGQSASNVRELFQTARDLAP 549 (979)
Q Consensus 484 G~~~P~gVLL~GPPGTGKTtLArAlA~elg~--~~i~Is~-sdL~~~--~-----~----vG~~~~~Ir~lF~~A~~~aP 549 (979)
..+..+++|+.||+||||||+++++++.... .++.+.- .++... . + .+...-...+++..+....|
T Consensus 158 ~v~~~~nilI~G~tGSGKTTll~aLl~~i~~~~rivtiEd~~El~l~~~~~v~l~~~~~~~~~~~~t~~~ll~~~LR~~p 237 (344)
T PRK13851 158 CVVGRLTMLLCGPTGSGKTTMSKTLISAIPPQERLITIEDTLELVIPHENHVRLLYSKNGAGLGAVTAEHLLQASLRMRP 237 (344)
T ss_pred HHHcCCeEEEECCCCccHHHHHHHHHcccCCCCCEEEECCCccccCCCCCEEEEEeeccccCcCccCHHHHHHHHhcCCC
Confidence 3455678999999999999999999998642 3333221 111100 0 0 11223356678888888899
Q ss_pred eEEEEcCcc
Q 035561 550 VIIFVEDFD 558 (979)
Q Consensus 550 ~ILfIDEID 558 (979)
..|++.|+-
T Consensus 238 D~IivGEiR 246 (344)
T PRK13851 238 DRILLGEMR 246 (344)
T ss_pred CeEEEEeeC
Confidence 999999983
No 425
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional
Probab=96.17 E-value=0.04 Score=63.90 Aligned_cols=59 Identities=15% Similarity=0.235 Sum_probs=38.3
Q ss_pred cHHHHHHHHHHHHh-hcChhHHHhcCCCCCceeEecCCCCCChHHHHHHHHHHc---CCCEEEeec
Q 035561 460 VESMREEINEVVAF-LQNPSAFQEMGARAPRGVLIVGERGTGKTSLALAIAAEA---RVPVVNVEA 521 (979)
Q Consensus 460 leevke~L~eiV~~-L~~p~~f~~lG~~~P~gVLL~GPPGTGKTtLArAlA~el---g~~~i~Is~ 521 (979)
.+++...+.+.+.. +..+..+ ....++.++|.||+|+||||++..+|..+ +..+..+++
T Consensus 180 ~~~v~~~~~~~L~~~l~~~~~~---~~~~~~ii~lvGptGvGKTTt~akLA~~l~~~g~~V~lIta 242 (407)
T PRK12726 180 LDDITDWFVPYLSGKLAVEDSF---DLSNHRIISLIGQTGVGKTTTLVKLGWQLLKQNRTVGFITT 242 (407)
T ss_pred HHHHHHHHHHHhcCcEeeCCCc---eecCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEeC
Confidence 45566666655554 2222211 23456778999999999999999998765 445555554
No 426
>cd03282 ABC_MSH4_euk MutS4 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=96.16 E-value=0.027 Score=59.84 Aligned_cols=23 Identities=30% Similarity=0.343 Sum_probs=20.3
Q ss_pred CceeEecCCCCCChHHHHHHHHH
Q 035561 488 PRGVLIVGERGTGKTSLALAIAA 510 (979)
Q Consensus 488 P~gVLL~GPPGTGKTtLArAlA~ 510 (979)
..-++|+||.|+|||++.+.++.
T Consensus 29 ~~~~~l~G~n~~GKstll~~i~~ 51 (204)
T cd03282 29 SRFHIITGPNMSGKSTYLKQIAL 51 (204)
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 35689999999999999999974
No 427
>TIGR00767 rho transcription termination factor Rho. Members of this family differ in the specificity of RNA binding.
Probab=96.16 E-value=0.013 Score=68.07 Aligned_cols=26 Identities=35% Similarity=0.295 Sum_probs=22.9
Q ss_pred CceeEecCCCCCChHHHHHHHHHHcC
Q 035561 488 PRGVLIVGERGTGKTSLALAIAAEAR 513 (979)
Q Consensus 488 P~gVLL~GPPGTGKTtLArAlA~elg 513 (979)
..-++|.||||||||++++.+++...
T Consensus 168 Gq~~~IvG~~g~GKTtL~~~i~~~I~ 193 (415)
T TIGR00767 168 GQRGLIVAPPKAGKTVLLQKIAQAIT 193 (415)
T ss_pred CCEEEEECCCCCChhHHHHHHHHhhc
Confidence 34599999999999999999999864
No 428
>PRK14529 adenylate kinase; Provisional
Probab=96.16 E-value=0.02 Score=61.87 Aligned_cols=34 Identities=21% Similarity=0.389 Sum_probs=28.5
Q ss_pred eeEecCCCCCChHHHHHHHHHHcCCCEEEeechhhh
Q 035561 490 GVLIVGERGTGKTSLALAIAAEARVPVVNVEAQELE 525 (979)
Q Consensus 490 gVLL~GPPGTGKTtLArAlA~elg~~~i~Is~sdL~ 525 (979)
.|+|.||||+||||+++.+|..++.+.+ +..+++
T Consensus 2 ~I~l~G~PGsGK~T~a~~La~~~~~~~i--s~gdll 35 (223)
T PRK14529 2 NILIFGPNGSGKGTQGALVKKKYDLAHI--ESGAIF 35 (223)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHCCCCc--ccchhh
Confidence 3889999999999999999999997764 445554
No 429
>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.15 E-value=0.02 Score=58.71 Aligned_cols=27 Identities=26% Similarity=0.254 Sum_probs=23.2
Q ss_pred CCCceeEecCCCCCChHHHHHHHHHHc
Q 035561 486 RAPRGVLIVGERGTGKTSLALAIAAEA 512 (979)
Q Consensus 486 ~~P~gVLL~GPPGTGKTtLArAlA~el 512 (979)
.+...+.|.||+|+|||||++.+++..
T Consensus 24 ~~Ge~~~i~G~nGsGKStLl~~l~G~~ 50 (173)
T cd03230 24 EKGEIYGLLGPNGAGKTTLIKIILGLL 50 (173)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 444568899999999999999999864
No 430
>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.
Probab=96.15 E-value=0.03 Score=57.63 Aligned_cols=28 Identities=18% Similarity=0.461 Sum_probs=24.3
Q ss_pred CCCCceeEecCCCCCChHHHHHHHHHHc
Q 035561 485 ARAPRGVLIVGERGTGKTSLALAIAAEA 512 (979)
Q Consensus 485 ~~~P~gVLL~GPPGTGKTtLArAlA~el 512 (979)
+++...+.|.||+|+|||||++++++..
T Consensus 25 i~~Ge~~~i~G~nGsGKStLl~~l~G~~ 52 (178)
T cd03247 25 LKQGEKIALLGRSGSGKSTLLQLLTGDL 52 (178)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhccC
Confidence 4455678999999999999999999975
No 431
>TIGR02533 type_II_gspE general secretory pathway protein E. This family describes GspE, the E protein of the type II secretion system, also called the main terminal branch of the general secretion pathway. This model separates GspE from the PilB protein of type IV pilin biosynthesis.
Probab=96.15 E-value=0.012 Score=70.47 Aligned_cols=94 Identities=20% Similarity=0.329 Sum_probs=58.3
Q ss_pred CCCCCcccCcHHHHHHHHHHHHhhcChhHHHhcCCCCCce-eEecCCCCCChHHHHHHHHHHcC---CCEEEeech-hhh
Q 035561 451 PIPLKDFASVESMREEINEVVAFLQNPSAFQEMGARAPRG-VLIVGERGTGKTSLALAIAAEAR---VPVVNVEAQ-ELE 525 (979)
Q Consensus 451 ~~~f~DIvGleevke~L~eiV~~L~~p~~f~~lG~~~P~g-VLL~GPPGTGKTtLArAlA~elg---~~~i~Is~s-dL~ 525 (979)
..+++++.-.++..+.|+.++ ..|.| +|++||+|+||||+..++.++++ .+++.+... ++.
T Consensus 218 ~~~l~~Lg~~~~~~~~l~~~~--------------~~~~GlilitGptGSGKTTtL~a~L~~l~~~~~~iiTiEDpvE~~ 283 (486)
T TIGR02533 218 RLDLETLGMSPELLSRFERLI--------------RRPHGIILVTGPTGSGKTTTLYAALSRLNTPERNILTVEDPVEYQ 283 (486)
T ss_pred CCCHHHcCCCHHHHHHHHHHH--------------hcCCCEEEEEcCCCCCHHHHHHHHHhccCCCCCcEEEEcCCeeee
Confidence 457888877777666666443 23344 68999999999999998888764 345544321 111
Q ss_pred hhh----hcc-cchhhHHHHHHHHHhcCCeEEEEcCcc
Q 035561 526 AGL----WVG-QSASNVRELFQTARDLAPVIIFVEDFD 558 (979)
Q Consensus 526 ~~~----~vG-~~~~~Ir~lF~~A~~~aP~ILfIDEID 558 (979)
-.. .+. ............+....|.||++.|+-
T Consensus 284 ~~~~~q~~v~~~~g~~f~~~lr~~LR~dPDvI~vGEiR 321 (486)
T TIGR02533 284 IEGIGQIQVNPKIGLTFAAGLRAILRQDPDIIMVGEIR 321 (486)
T ss_pred cCCCceEEEccccCccHHHHHHHHHhcCCCEEEEeCCC
Confidence 000 011 011234445566667789999999984
No 432
>TIGR00174 miaA tRNA isopentenyltransferase (miaA). Catalyzes the first step in the modification of an adenosine near the anticodon to 2-methylthio-N6-isopentyladenosine.
Probab=96.15 E-value=0.029 Score=62.75 Aligned_cols=37 Identities=24% Similarity=0.574 Sum_probs=32.2
Q ss_pred eEecCCCCCChHHHHHHHHHHcCCCEEEeechhhhhh
Q 035561 491 VLIVGERGTGKTSLALAIAAEARVPVVNVEAQELEAG 527 (979)
Q Consensus 491 VLL~GPPGTGKTtLArAlA~elg~~~i~Is~sdL~~~ 527 (979)
+++.||+|+|||++|..+|.+.+..+++++.-.+..+
T Consensus 2 i~i~G~t~~GKs~la~~l~~~~~~~iis~Ds~qvY~~ 38 (287)
T TIGR00174 2 IFIMGPTAVGKSQLAIQLAKKLNAEIISVDSMQIYKG 38 (287)
T ss_pred EEEECCCCCCHHHHHHHHHHhCCCcEEEechhheeee
Confidence 6899999999999999999999999988877666533
No 433
>TIGR03880 KaiC_arch_3 KaiC domain protein, AF_0351 family. This model represents a rather narrowly distributed archaeal protein family in which members have a single copy of the KaiC domain. This stands in contrast to the circadian clock protein KaiC itself, with two copies of the domain. Members are expected to have weak ATPase activity, by homology to the autokinase/autophosphorylase KaiC itself.
Probab=96.14 E-value=0.023 Score=60.54 Aligned_cols=39 Identities=23% Similarity=0.418 Sum_probs=31.1
Q ss_pred CCCCCceeEecCCCCCChHHHHHHHHHHc---CCCEEEeech
Q 035561 484 GARAPRGVLIVGERGTGKTSLALAIAAEA---RVPVVNVEAQ 522 (979)
Q Consensus 484 G~~~P~gVLL~GPPGTGKTtLArAlA~el---g~~~i~Is~s 522 (979)
|++....+++.|+||+|||+++..+|.+. |.++++++..
T Consensus 12 Gi~~g~~~li~G~~G~GKt~~~~~~~~~~~~~g~~~~y~s~e 53 (224)
T TIGR03880 12 GFPEGHVIVVIGEYGTGKTTFSLQFLYQGLKNGEKAMYISLE 53 (224)
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEECC
Confidence 56667789999999999999999887643 6777777653
No 434
>TIGR03499 FlhF flagellar biosynthetic protein FlhF.
Probab=96.13 E-value=0.016 Score=64.48 Aligned_cols=37 Identities=24% Similarity=0.285 Sum_probs=28.5
Q ss_pred CCceeEecCCCCCChHHHHHHHHHHc----C-CCEEEeechh
Q 035561 487 APRGVLIVGERGTGKTSLALAIAAEA----R-VPVVNVEAQE 523 (979)
Q Consensus 487 ~P~gVLL~GPPGTGKTtLArAlA~el----g-~~~i~Is~sd 523 (979)
.+..++|+||+|+||||++..+|..+ | ..+..+++..
T Consensus 193 ~~~vi~~vGptGvGKTTt~~kLa~~~~~~~g~~~V~li~~D~ 234 (282)
T TIGR03499 193 QGGVIALVGPTGVGKTTTLAKLAARFVLEHGNKKVALITTDT 234 (282)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHHcCCCeEEEEECCc
Confidence 45679999999999999999998765 3 5555565543
No 435
>COG1936 Predicted nucleotide kinase (related to CMP and AMP kinases) [Nucleotide transport and metabolism]
Probab=96.13 E-value=0.0038 Score=64.52 Aligned_cols=32 Identities=31% Similarity=0.527 Sum_probs=28.1
Q ss_pred eEecCCCCCChHHHHHHHHHHcCCCEEEeechhhh
Q 035561 491 VLIVGERGTGKTSLALAIAAEARVPVVNVEAQELE 525 (979)
Q Consensus 491 VLL~GPPGTGKTtLArAlA~elg~~~i~Is~sdL~ 525 (979)
++++|.|||||||+++.++ ++|.+.++++ ++.
T Consensus 3 I~ITGTPGvGKTT~~~~L~-~lg~~~i~l~--el~ 34 (180)
T COG1936 3 IAITGTPGVGKTTVCKLLR-ELGYKVIELN--ELA 34 (180)
T ss_pred EEEeCCCCCchHHHHHHHH-HhCCceeeHH--HHH
Confidence 7899999999999999999 9999887665 554
No 436
>PF13481 AAA_25: AAA domain; PDB: 1G8Y_J 1OLO_A 1NLF_C.
Probab=96.13 E-value=0.011 Score=61.08 Aligned_cols=75 Identities=24% Similarity=0.372 Sum_probs=42.1
Q ss_pred ceeEecCCCCCChHHHHHHHHHHc-------------CCCEEEeechhhhh---hh---------------hcc------
Q 035561 489 RGVLIVGERGTGKTSLALAIAAEA-------------RVPVVNVEAQELEA---GL---------------WVG------ 531 (979)
Q Consensus 489 ~gVLL~GPPGTGKTtLArAlA~el-------------g~~~i~Is~sdL~~---~~---------------~vG------ 531 (979)
.-++++||||+|||+++-.+|..+ +.+++++++..-.. .. +..
T Consensus 33 ~l~~i~g~~g~GKT~~~~~l~~~~~~g~~~~g~~~~~~~~Vl~i~~E~~~~~~~~rl~~~~~~~~~~~~~~~~~~~~~~~ 112 (193)
T PF13481_consen 33 ELTLIAGPPGSGKTTLALQLAAALATGRPFLGELPPRPGRVLYISLEDSESQIARRLRALLQDYDDDANLFFVDLSNWGC 112 (193)
T ss_dssp SEEEEEECSTSSHHHHHHHHHHHHHT---TT---------EEEEESSS-HHHHHHHHHHHHTTS-HHHHHHHHHH--E-E
T ss_pred eEEEEEeCCCCCHHHHHHHHHHHHHhCCccCCcccccCceEEEEeccCCHHHHHHHHHHHhcccCCccceEEeecccccc
Confidence 348899999999999999888765 23677776532100 00 000
Q ss_pred -----------cchhhHHHHHHHHHh-cCCeEEEEcCccccccc
Q 035561 532 -----------QSASNVRELFQTARD-LAPVIIFVEDFDLFAGV 563 (979)
Q Consensus 532 -----------~~~~~Ir~lF~~A~~-~aP~ILfIDEIDaL~~~ 563 (979)
.....+..+.+.+.. ..|.+++||.+..+...
T Consensus 113 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~lvviD~l~~~~~~ 156 (193)
T PF13481_consen 113 IRLFEPDSGGPLLDEDLEELEAALKELYGPDLVVIDPLQSLHDG 156 (193)
T ss_dssp E---TTS---TTSHHHHHHHHHHHTT----SEEEEE-GGGG--S
T ss_pred ceeeecccccccchHHHHHHHHHHhhcCCCcEEEEcCHHHHhcC
Confidence 011223445555566 56899999999998653
No 437
>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.
Probab=96.11 E-value=0.018 Score=59.36 Aligned_cols=28 Identities=32% Similarity=0.364 Sum_probs=23.9
Q ss_pred CCCCceeEecCCCCCChHHHHHHHHHHc
Q 035561 485 ARAPRGVLIVGERGTGKTSLALAIAAEA 512 (979)
Q Consensus 485 ~~~P~gVLL~GPPGTGKTtLArAlA~el 512 (979)
+.+..-+.|.||+|+|||||++.+++..
T Consensus 22 i~~G~~~~l~G~nGsGKStLl~~i~G~~ 49 (180)
T cd03214 22 IEAGEIVGILGPNGAGKSTLLKTLAGLL 49 (180)
T ss_pred ECCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 3445568899999999999999999965
No 438
>PHA02774 E1; Provisional
Probab=96.11 E-value=0.013 Score=70.67 Aligned_cols=38 Identities=21% Similarity=0.360 Sum_probs=29.7
Q ss_pred CCCCCceeEecCCCCCChHHHHHHHHHHcCCCEEE-eec
Q 035561 484 GARAPRGVLIVGERGTGKTSLALAIAAEARVPVVN-VEA 521 (979)
Q Consensus 484 G~~~P~gVLL~GPPGTGKTtLArAlA~elg~~~i~-Is~ 521 (979)
|.+...+++|+||||||||++|-+|++.++-.++. +|.
T Consensus 430 ~~PKknciv~~GPP~TGKS~fa~sL~~~L~G~vi~fvN~ 468 (613)
T PHA02774 430 GIPKKNCLVIYGPPDTGKSMFCMSLIKFLKGKVISFVNS 468 (613)
T ss_pred cCCcccEEEEECCCCCCHHHHHHHHHHHhCCCEEEEEEC
Confidence 44444689999999999999999999998654443 553
No 439
>PF13238 AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB_A 3IIM_A 2AXP_A 3KB2_A 1KHT_A 1NKS_A 3H86_C ....
Probab=96.10 E-value=0.0033 Score=59.78 Aligned_cols=22 Identities=36% Similarity=0.518 Sum_probs=21.0
Q ss_pred eEecCCCCCChHHHHHHHHHHc
Q 035561 491 VLIVGERGTGKTSLALAIAAEA 512 (979)
Q Consensus 491 VLL~GPPGTGKTtLArAlA~el 512 (979)
|+|.|+|||||||+|+.++..+
T Consensus 1 I~i~G~~GsGKtTia~~L~~~~ 22 (129)
T PF13238_consen 1 IGISGIPGSGKTTIAKELAERL 22 (129)
T ss_dssp EEEEESTTSSHHHHHHHHHHHH
T ss_pred CEEECCCCCCHHHHHHHHHHHH
Confidence 6899999999999999999988
No 440
>TIGR01526 nadR_NMN_Atrans nicotinamide-nucleotide adenylyltransferase, NadR type. E. coli NadR has also been found to regulate the import of its substrate, nicotinamide ribonucleotide, but it is not known if the other members of this model share that activity.
Probab=96.09 E-value=0.01 Score=67.37 Aligned_cols=67 Identities=25% Similarity=0.238 Sum_probs=44.8
Q ss_pred ceeEecCCCCCChHHHHHHHHHHcCCCEEEeechhhhhhhhcccc-----------hhhHHHHHHHHHhcCCeEEEEcC
Q 035561 489 RGVLIVGERGTGKTSLALAIAAEARVPVVNVEAQELEAGLWVGQS-----------ASNVRELFQTARDLAPVIIFVED 556 (979)
Q Consensus 489 ~gVLL~GPPGTGKTtLArAlA~elg~~~i~Is~sdL~~~~~vG~~-----------~~~Ir~lF~~A~~~aP~ILfIDE 556 (979)
..+.|.|+||||||||+++++...+.+++.-.+.+.......+.. ...... ...+...++.|||+|-
T Consensus 163 ~~~~~~G~~~~gkstl~~~l~~~~~~~~v~E~~R~~~~~~~~~~~~l~~~d~~~i~~g~~~~-~~~~~~~a~~iif~D~ 240 (325)
T TIGR01526 163 KTVAILGGESTGKSTLVNKLAAVFNTTSAWEYAREYVEEKLGGDEALQYSDYAQIALGQQRY-IDYAVRHAHKIAFIDT 240 (325)
T ss_pred cEEEEECCCCCCHHHHHHHHHHhhCCCEEeehhHHHHHHhcCCCcccCHHHHHHHHHHHHHH-HHHHHhhcCCeEEEcC
Confidence 469999999999999999999999999877666555433211111 111112 2334444678999994
No 441
>PRK06581 DNA polymerase III subunit delta'; Validated
Probab=96.08 E-value=0.12 Score=56.65 Aligned_cols=135 Identities=12% Similarity=0.025 Sum_probs=93.0
Q ss_pred ceeEecCCCC-CChHHHHHHHHHHcCCC---------EEEeechhhhhhhhcccchhhHHHHHHHHHh----cCCeEEEE
Q 035561 489 RGVLIVGERG-TGKTSLALAIAAEARVP---------VVNVEAQELEAGLWVGQSASNVRELFQTARD----LAPVIIFV 554 (979)
Q Consensus 489 ~gVLL~GPPG-TGKTtLArAlA~elg~~---------~i~Is~sdL~~~~~vG~~~~~Ir~lF~~A~~----~aP~ILfI 554 (979)
...|+.|..+ +||..++..++..+... ++.+....-....-..-+...+|++-+.+.. ...-|++|
T Consensus 16 hAYLfeG~n~~~~~~~~~~f~~~~l~~~~i~~~~HPD~~~I~pe~~~~~~~~~I~IdqIReL~~~l~~~p~~g~~KViII 95 (263)
T PRK06581 16 NSWLIEAENIEQALKDLEKFIYIKLFKNSIPLENNPDYHFIARETSATSNAKNISIEQIRKLQDFLSKTSAISGYKVAII 95 (263)
T ss_pred heeeEeCCChhhHHHHHHHHHHHHHhccCcccCCCCCEEEEeccccccccCCcccHHHHHHHHHHHhhCcccCCcEEEEE
Confidence 4599999998 99999999888876321 2222211000000011245567776666543 23479999
Q ss_pred cCccccccccccccCCCchhhHHHHHHHHhhhcccccCCeEEEEecccchhhchhhhhcCCceeeEeccCCCCHHHHHHH
Q 035561 555 EDFDLFAGVRGQFIHTKQQDHESFINQLLVELDGFEKQDGVVLMATTRNIKQIDEALQRPGRMDRIFNLQKPTQSEREKI 634 (979)
Q Consensus 555 DEIDaL~~~r~~~~~~~~~~~~~iln~LL~~LDg~~~~~~ViVIATTN~pe~LDpALlRpgRFd~~I~~~~Pd~eeR~~I 634 (979)
+++|.+ .....|.||+.++. +..++++|.+|++++.|.|.++++| ..+.++.|+...-.+.
T Consensus 96 ~~ae~m--------------t~~AANALLKtLEE--PP~~t~fILit~~~~~LLpTIrSRC---q~i~~~~p~~~~~~e~ 156 (263)
T PRK06581 96 YSAELM--------------NLNAANSCLKILED--APKNSYIFLITSRAASIISTIRSRC---FKINVRSSILHAYNEL 156 (263)
T ss_pred echHHh--------------CHHHHHHHHHhhcC--CCCCeEEEEEeCChhhCchhHhhce---EEEeCCCCCHHHHHHH
Confidence 999987 45678899999985 4556777777888999999999944 6888999999887777
Q ss_pred HHHHHHhc
Q 035561 635 LRIAAQET 642 (979)
Q Consensus 635 L~~~l~~~ 642 (979)
....+...
T Consensus 157 ~~~~~~p~ 164 (263)
T PRK06581 157 YSQFIQPI 164 (263)
T ss_pred HHHhcccc
Confidence 77766543
No 442
>TIGR02655 circ_KaiC circadian clock protein KaiC. Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor.
Probab=96.08 E-value=0.015 Score=69.41 Aligned_cols=78 Identities=21% Similarity=0.235 Sum_probs=54.2
Q ss_pred CCCCCceeEecCCCCCChHHHHHHHHHHc---CCCEEEeechhhh----hhh-hccc----------------------c
Q 035561 484 GARAPRGVLIVGERGTGKTSLALAIAAEA---RVPVVNVEAQELE----AGL-WVGQ----------------------S 533 (979)
Q Consensus 484 G~~~P~gVLL~GPPGTGKTtLArAlA~el---g~~~i~Is~sdL~----~~~-~vG~----------------------~ 533 (979)
|++....+|+.||||||||+++-.++.+. |.+.++++..+-. ... ..|. .
T Consensus 259 G~~~gs~~li~G~~G~GKt~l~~~f~~~~~~~ge~~~y~s~eEs~~~i~~~~~~lg~~~~~~~~~g~l~~~~~~p~~~~~ 338 (484)
T TIGR02655 259 GFFKDSIILATGATGTGKTLLVSKFLENACANKERAILFAYEESRAQLLRNAYSWGIDFEEMEQQGLLKIICAYPESAGL 338 (484)
T ss_pred CccCCcEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEEeeCCHHHHHHHHHHcCCChHHHhhCCcEEEEEcccccCCh
Confidence 56667789999999999999999888865 6677777754321 000 0110 1
Q ss_pred hhhHHHHHHHHHhcCCeEEEEcCccccc
Q 035561 534 ASNVRELFQTARDLAPVIIFVEDFDLFA 561 (979)
Q Consensus 534 ~~~Ir~lF~~A~~~aP~ILfIDEIDaL~ 561 (979)
...+..+.+......|.+|+||-+..+.
T Consensus 339 ~~~~~~i~~~i~~~~~~~vvIDsi~~~~ 366 (484)
T TIGR02655 339 EDHLQIIKSEIADFKPARIAIDSLSALA 366 (484)
T ss_pred HHHHHHHHHHHHHcCCCEEEEcCHHHHH
Confidence 3445566666777789999999998764
No 443
>PRK04182 cytidylate kinase; Provisional
Probab=96.07 E-value=0.0051 Score=62.45 Aligned_cols=28 Identities=32% Similarity=0.482 Sum_probs=26.2
Q ss_pred eEecCCCCCChHHHHHHHHHHcCCCEEE
Q 035561 491 VLIVGERGTGKTSLALAIAAEARVPVVN 518 (979)
Q Consensus 491 VLL~GPPGTGKTtLArAlA~elg~~~i~ 518 (979)
|+|.|+|||||||+++.+|..+|.+++.
T Consensus 3 I~i~G~~GsGKstia~~la~~lg~~~id 30 (180)
T PRK04182 3 ITISGPPGSGKTTVARLLAEKLGLKHVS 30 (180)
T ss_pred EEEECCCCCCHHHHHHHHHHHcCCcEec
Confidence 7899999999999999999999998765
No 444
>TIGR02239 recomb_RAD51 DNA repair protein RAD51. This eukaryotic sequence family consists of RAD51, a protein involved in DNA homologous recombination and repair. It is similar in sequence the exclusively meiotic recombinase DMC1 (TIGR02238), to archaeal families RadA (TIGR02236) and RadB (TIGR02237), and to bacterial RecA (TIGR02012).
Probab=96.07 E-value=0.012 Score=66.80 Aligned_cols=116 Identities=15% Similarity=0.147 Sum_probs=62.0
Q ss_pred CCCCCceeEecCCCCCChHHHHHHHHHHcC---------CCEEEeechhhhhh-hh------cccc--------------
Q 035561 484 GARAPRGVLIVGERGTGKTSLALAIAAEAR---------VPVVNVEAQELEAG-LW------VGQS-------------- 533 (979)
Q Consensus 484 G~~~P~gVLL~GPPGTGKTtLArAlA~elg---------~~~i~Is~sdL~~~-~~------vG~~-------------- 533 (979)
|++...-+.++||||+|||+++..+|.... ..+++++..+-+.. .. .+..
T Consensus 92 Gi~~g~i~~i~G~~g~GKT~l~~~~~~~~~~~~~~Gg~~~~vvyIdtE~~f~~~Rl~~ia~~~~~~~~~~l~~i~~~~~~ 171 (316)
T TIGR02239 92 GIETGSITEIFGEFRTGKTQLCHTLAVTCQLPIDQGGGEGKALYIDTEGTFRPERLLAIAERYGLNPEDVLDNVAYARAY 171 (316)
T ss_pred CCCCCeEEEEECCCCCCcCHHHHHHHHHHhhhhhcCCCCceEEEEECCCCCCHHHHHHHHHHcCCChHHhhccEEEEecC
Confidence 556666688999999999999999886321 35677776552110 00 0100
Q ss_pred -hh----hHHHHHHHHHhcCCeEEEEcCccccccccccccCCCchhhHHHHHHHHhhhcccccCCeEEEEec
Q 035561 534 -AS----NVRELFQTARDLAPVIIFVEDFDLFAGVRGQFIHTKQQDHESFINQLLVELDGFEKQDGVVLMAT 600 (979)
Q Consensus 534 -~~----~Ir~lF~~A~~~aP~ILfIDEIDaL~~~r~~~~~~~~~~~~~iln~LL~~LDg~~~~~~ViVIAT 600 (979)
.. .+..+........+.+|+||-|-++.+..-.. .+........+.+++..|..+....++.|+.|
T Consensus 172 ~~~~~~~~l~~~~~~~~~~~~~LvVIDSI~al~r~~~~~-~~~~~~rq~~l~~~~~~L~~la~~~~vavv~t 242 (316)
T TIGR02239 172 NTDHQLQLLQQAAAMMSESRFALLIVDSATALYRTDFSG-RGELSARQMHLARFLRSLQRLADEFGVAVVIT 242 (316)
T ss_pred ChHHHHHHHHHHHHhhccCCccEEEEECcHHHhhhhcCC-cchHHHHHHHHHHHHHHHHHHHHHhCCEEEEE
Confidence 00 11111122233468999999998885432110 01111122345566666655544445555554
No 445
>PRK13833 conjugal transfer protein TrbB; Provisional
Probab=96.07 E-value=0.0081 Score=68.21 Aligned_cols=71 Identities=27% Similarity=0.385 Sum_probs=48.1
Q ss_pred CCceeEecCCCCCChHHHHHHHHHHc-----CCCEEEee-chhhhhh--h---hcccchhhHHHHHHHHHhcCCeEEEEc
Q 035561 487 APRGVLIVGERGTGKTSLALAIAAEA-----RVPVVNVE-AQELEAG--L---WVGQSASNVRELFQTARDLAPVIIFVE 555 (979)
Q Consensus 487 ~P~gVLL~GPPGTGKTtLArAlA~el-----g~~~i~Is-~sdL~~~--~---~vG~~~~~Ir~lF~~A~~~aP~ILfID 555 (979)
...++|++|++||||||++++++... +..++.+. ..++... . +.....-...+++..+....|..|++.
T Consensus 143 ~~~nilI~G~tGSGKTTll~aL~~~i~~~~~~~rivtiEd~~El~~~~~n~v~l~~~~~~~~~~lv~~aLR~~PD~IivG 222 (323)
T PRK13833 143 SRLNIVISGGTGSGKTTLANAVIAEIVASAPEDRLVILEDTAEIQCAAENAVALHTSDTVDMARLLKSTMRLRPDRIIVG 222 (323)
T ss_pred cCCeEEEECCCCCCHHHHHHHHHHHHhcCCCCceEEEecCCcccccCCCCEEEeccCCCcCHHHHHHHHhCCCCCEEEEe
Confidence 35689999999999999999999876 23344432 1122100 0 111122346778888888999999999
Q ss_pred Cc
Q 035561 556 DF 557 (979)
Q Consensus 556 EI 557 (979)
|+
T Consensus 223 Ei 224 (323)
T PRK13833 223 EV 224 (323)
T ss_pred ec
Confidence 98
No 446
>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra
Probab=96.04 E-value=0.021 Score=58.57 Aligned_cols=27 Identities=30% Similarity=0.454 Sum_probs=23.2
Q ss_pred CCCceeEecCCCCCChHHHHHHHHHHc
Q 035561 486 RAPRGVLIVGERGTGKTSLALAIAAEA 512 (979)
Q Consensus 486 ~~P~gVLL~GPPGTGKTtLArAlA~el 512 (979)
....-+.|.||+|+|||||++.+++..
T Consensus 26 ~~Ge~~~i~G~nGsGKStLl~~l~G~~ 52 (173)
T cd03246 26 EPGESLAIIGPSGSGKSTLARLILGLL 52 (173)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhcc
Confidence 344568899999999999999999975
No 447
>cd03280 ABC_MutS2 MutS2 homologs in bacteria and eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, a
Probab=96.04 E-value=0.034 Score=58.48 Aligned_cols=21 Identities=29% Similarity=0.404 Sum_probs=19.5
Q ss_pred ceeEecCCCCCChHHHHHHHH
Q 035561 489 RGVLIVGERGTGKTSLALAIA 509 (979)
Q Consensus 489 ~gVLL~GPPGTGKTtLArAlA 509 (979)
+.++|+||.|+||||+.+.++
T Consensus 29 ~~~~ltG~Ng~GKStll~~i~ 49 (200)
T cd03280 29 RVLVITGPNAGGKTVTLKTLG 49 (200)
T ss_pred eEEEEECCCCCChHHHHHHHH
Confidence 359999999999999999998
No 448
>cd00544 CobU Adenosylcobinamide kinase / adenosylcobinamide phosphate guanyltransferase (CobU). CobU is bifunctional cobalbumin biosynthesis enzymes which display adenosylcobinamide kinase and adenosylcobinamide phosphate guanyltransferase activity. This enzyme is a homotrimer with a propeller-like shape.
Probab=96.04 E-value=0.022 Score=58.89 Aligned_cols=71 Identities=17% Similarity=0.265 Sum_probs=45.5
Q ss_pred eEecCCCCCChHHHHHHHHHHcCCCEEEeechhhhhh----h------------hcccchhhHHHHHHHHHhcCCeEEEE
Q 035561 491 VLIVGERGTGKTSLALAIAAEARVPVVNVEAQELEAG----L------------WVGQSASNVRELFQTARDLAPVIIFV 554 (979)
Q Consensus 491 VLL~GPPGTGKTtLArAlA~elg~~~i~Is~sdL~~~----~------------~vG~~~~~Ir~lF~~A~~~aP~ILfI 554 (979)
+|++|+||+|||++|..++...+.+.+++....-... + ...+....+.+.+.... .+.+++|
T Consensus 2 ~li~G~~~sGKS~~a~~~~~~~~~~~~y~at~~~~d~em~~rI~~H~~~R~~~w~t~E~~~~l~~~l~~~~--~~~~VLI 79 (169)
T cd00544 2 ILVTGGARSGKSRFAERLAAELGGPVTYIATAEAFDDEMAERIARHRKRRPAHWRTIETPRDLVSALKELD--PGDVVLI 79 (169)
T ss_pred EEEECCCCCCHHHHHHHHHHhcCCCeEEEEccCcCCHHHHHHHHHHHHhCCCCceEeecHHHHHHHHHhcC--CCCEEEE
Confidence 6899999999999999999988878887765432100 0 01112223333332221 4679999
Q ss_pred cCccccccc
Q 035561 555 EDFDLFAGV 563 (979)
Q Consensus 555 DEIDaL~~~ 563 (979)
|-+..+...
T Consensus 80 Dclt~~~~n 88 (169)
T cd00544 80 DCLTLWVTN 88 (169)
T ss_pred EcHhHHHHH
Confidence 999876543
No 449
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=96.04 E-value=0.057 Score=63.60 Aligned_cols=37 Identities=24% Similarity=0.235 Sum_probs=29.7
Q ss_pred CCCceeEecCCCCCChHHHHHHHHHHc---CCCEEEeech
Q 035561 486 RAPRGVLIVGERGTGKTSLALAIAAEA---RVPVVNVEAQ 522 (979)
Q Consensus 486 ~~P~gVLL~GPPGTGKTtLArAlA~el---g~~~i~Is~s 522 (979)
..|.-++|+|++|+||||++..+|..+ |..+..+++.
T Consensus 98 ~~~~vi~lvG~~GvGKTTtaaKLA~~l~~~G~kV~lV~~D 137 (429)
T TIGR01425 98 GKQNVIMFVGLQGSGKTTTCTKLAYYYQRKGFKPCLVCAD 137 (429)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEcCc
Confidence 346779999999999999999999776 6666666663
No 450
>TIGR03881 KaiC_arch_4 KaiC domain protein, PAE1156 family. Members of this protein family are archaeal single-domain KaiC_related proteins, homologous to the Cyanobacterial circadian clock cycle protein KaiC, an autokinase/autophosphorylase that has two copies of the domain.
Probab=95.98 E-value=0.027 Score=60.03 Aligned_cols=40 Identities=38% Similarity=0.460 Sum_probs=31.6
Q ss_pred CCCCCceeEecCCCCCChHHHHHHHHHHc---CCCEEEeechh
Q 035561 484 GARAPRGVLIVGERGTGKTSLALAIAAEA---RVPVVNVEAQE 523 (979)
Q Consensus 484 G~~~P~gVLL~GPPGTGKTtLArAlA~el---g~~~i~Is~sd 523 (979)
|++....++++||||||||+++..++.+. +.++++++...
T Consensus 16 Gi~~G~~~~i~G~~G~GKT~l~~~~~~~~~~~g~~~~~is~e~ 58 (229)
T TIGR03881 16 GIPRGFFVAVTGEPGTGKTIFCLHFAYKGLRDGDPVIYVTTEE 58 (229)
T ss_pred CCcCCeEEEEECCCCCChHHHHHHHHHHHHhcCCeEEEEEccC
Confidence 67777889999999999999999876532 66777777643
No 451
>PF13245 AAA_19: Part of AAA domain
Probab=95.98 E-value=0.0088 Score=53.83 Aligned_cols=31 Identities=35% Similarity=0.432 Sum_probs=21.4
Q ss_pred eEecCCCCCChH-HHHHHHHHHc------CCCEEEeec
Q 035561 491 VLIVGERGTGKT-SLALAIAAEA------RVPVVNVEA 521 (979)
Q Consensus 491 VLL~GPPGTGKT-tLArAlA~el------g~~~i~Is~ 521 (979)
+++.|||||||| ++++.++... +..++.+..
T Consensus 13 ~vv~g~pGtGKT~~~~~~i~~l~~~~~~~~~~vlv~a~ 50 (76)
T PF13245_consen 13 FVVQGPPGTGKTTTLAARIAELLAARADPGKRVLVLAP 50 (76)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHHhcCCCCeEEEECC
Confidence 556999999999 5666666655 445555544
No 452
>COG2804 PulE Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=95.98 E-value=0.013 Score=69.26 Aligned_cols=95 Identities=18% Similarity=0.281 Sum_probs=58.9
Q ss_pred CCCCCCcccCcHHHHHHHHHHHHhhcChhHHHhcCCCCCce-eEecCCCCCChHHHHHHHHHHcCCCEEE-eechhhhhh
Q 035561 450 PPIPLKDFASVESMREEINEVVAFLQNPSAFQEMGARAPRG-VLIVGERGTGKTSLALAIAAEARVPVVN-VEAQELEAG 527 (979)
Q Consensus 450 ~~~~f~DIvGleevke~L~eiV~~L~~p~~f~~lG~~~P~g-VLL~GPPGTGKTtLArAlA~elg~~~i~-Is~sdL~~~ 527 (979)
...+|++++......+.+..++ ..|.| +|++||.|+||||...++.++++.+... ++..|-+.-
T Consensus 233 ~~l~l~~Lg~~~~~~~~~~~~~--------------~~p~GliLvTGPTGSGKTTTLY~~L~~ln~~~~nI~TiEDPVE~ 298 (500)
T COG2804 233 VILDLEKLGMSPFQLARLLRLL--------------NRPQGLILVTGPTGSGKTTTLYAALSELNTPERNIITIEDPVEY 298 (500)
T ss_pred ccCCHHHhCCCHHHHHHHHHHH--------------hCCCeEEEEeCCCCCCHHHHHHHHHHHhcCCCceEEEeeCCeee
Confidence 4567888888877766666443 33555 5677999999999999999998754432 222222110
Q ss_pred hhcccc--------hhhHHHHHHHHHhcCCeEEEEcCcc
Q 035561 528 LWVGQS--------ASNVRELFQTARDLAPVIIFVEDFD 558 (979)
Q Consensus 528 ~~vG~~--------~~~Ir~lF~~A~~~aP~ILfIDEID 558 (979)
...|.. .-.....++..-.+.|.||.+.||-
T Consensus 299 ~~~gI~Q~qVN~k~gltfa~~LRa~LRqDPDvImVGEIR 337 (500)
T COG2804 299 QLPGINQVQVNPKIGLTFARALRAILRQDPDVIMVGEIR 337 (500)
T ss_pred ecCCcceeecccccCCCHHHHHHHHhccCCCeEEEeccC
Confidence 111111 1112334455566789999999994
No 453
>KOG0481 consensus DNA replication licensing factor, MCM5 component [Replication, recombination and repair]
Probab=95.98 E-value=0.0085 Score=70.28 Aligned_cols=170 Identities=17% Similarity=0.249 Sum_probs=90.7
Q ss_pred cccCcHHHHHHHHHHHHhhcChhHH-HhcCCCCCceeEecCCCCCChHHHHHHHHHHcCCCEEEeechhhhhhhhcccch
Q 035561 456 DFASVESMREEINEVVAFLQNPSAF-QEMGARAPRGVLIVGERGTGKTSLALAIAAEARVPVVNVEAQELEAGLWVGQSA 534 (979)
Q Consensus 456 DIvGleevke~L~eiV~~L~~p~~f-~~lG~~~P~gVLL~GPPGTGKTtLArAlA~elg~~~i~Is~sdL~~~~~vG~~~ 534 (979)
.|-|.+++|+.+.=++ +-...+.. ..+..+-.-+|||.|.|||.||-|.|-+-+-..+-++. ++.. +.-.|-++
T Consensus 332 SIfG~~DiKkAiaClL-FgGsrK~LpDg~~lRGDINVLLLGDPgtAKSQlLKFvEkvsPIaVYT-SGKG---SSAAGLTA 406 (729)
T KOG0481|consen 332 SIFGHEDIKKAIACLL-FGGSRKRLPDGVTLRGDINVLLLGDPGTAKSQLLKFVEKVSPIAVYT-SGKG---SSAAGLTA 406 (729)
T ss_pred hhcCchhHHHHHHHHh-hcCccccCCCcceeccceeEEEecCCchhHHHHHHHHHhcCceEEEe-cCCC---ccccccee
Confidence 5789999999876322 11111100 00112223579999999999999999998776555443 2211 11233333
Q ss_pred hhHHHHHH-----HHHh---cCCeEEEEcCccccccccccccCCCchhhHHHHHHHHhh-hccc--ccCCeEEEEecccc
Q 035561 535 SNVRELFQ-----TARD---LAPVIIFVEDFDLFAGVRGQFIHTKQQDHESFINQLLVE-LDGF--EKQDGVVLMATTRN 603 (979)
Q Consensus 535 ~~Ir~lF~-----~A~~---~aP~ILfIDEIDaL~~~r~~~~~~~~~~~~~iln~LL~~-LDg~--~~~~~ViVIATTN~ 603 (979)
+-+|+--. +-.. ...+|++|||+|.+-.... -.-++.+++ |-+.. -.|+ .-+.+.-|+||+|.
T Consensus 407 SV~RD~~tReFylEGGAMVLADgGVvCIDEFDKMre~DR---VAIHEAMEQ---QTISIAKAGITT~LNSRtSVLAAANp 480 (729)
T KOG0481|consen 407 SVIRDPSTREFYLEGGAMVLADGGVVCIDEFDKMREDDR---VAIHEAMEQ---QTISIAKAGITTTLNSRTSVLAAANP 480 (729)
T ss_pred eEEecCCcceEEEecceEEEecCCEEEeehhhccCchhh---hHHHHHHHh---hhHHHhhhcceeeecchhhhhhhcCC
Confidence 33332111 1000 1358999999998721100 001111111 11111 0122 12345678899888
Q ss_pred h-----------hh--chhhhhcCCceeeEeccCCCCHHHHHHHHHHH
Q 035561 604 I-----------KQ--IDEALQRPGRMDRIFNLQKPTQSEREKILRIA 638 (979)
Q Consensus 604 p-----------e~--LDpALlRpgRFd~~I~~~~Pd~eeR~~IL~~~ 638 (979)
+ +. +-|.+++ |||-++-+..--.++|-..|-.|
T Consensus 481 vfGRyDd~Kt~~dNIDf~~TILS--RFDmIFIVKD~h~~~~D~~lAkH 526 (729)
T KOG0481|consen 481 VFGRYDDTKTGEDNIDFMPTILS--RFDMIFIVKDEHDEERDITLAKH 526 (729)
T ss_pred ccccccccCCcccccchhhhHhh--hccEEEEEeccCcchhhhHHHHH
Confidence 3 22 3478999 99998888776666565544444
No 454
>PRK05541 adenylylsulfate kinase; Provisional
Probab=95.98 E-value=0.0078 Score=61.65 Aligned_cols=28 Identities=29% Similarity=0.378 Sum_probs=24.9
Q ss_pred CCCceeEecCCCCCChHHHHHHHHHHcC
Q 035561 486 RAPRGVLIVGERGTGKTSLALAIAAEAR 513 (979)
Q Consensus 486 ~~P~gVLL~GPPGTGKTtLArAlA~elg 513 (979)
+.|.-++|.|+|||||||+|+++++.+.
T Consensus 5 ~~~~~I~i~G~~GsGKst~a~~l~~~l~ 32 (176)
T PRK05541 5 PNGYVIWITGLAGSGKTTIAKALYERLK 32 (176)
T ss_pred CCCCEEEEEcCCCCCHHHHHHHHHHHHH
Confidence 3466799999999999999999999885
No 455
>PHA02530 pseT polynucleotide kinase; Provisional
Probab=95.97 E-value=0.0059 Score=67.74 Aligned_cols=36 Identities=36% Similarity=0.498 Sum_probs=27.5
Q ss_pred CceeEecCCCCCChHHHHHHHHHHcCCCEEEeechhh
Q 035561 488 PRGVLIVGERGTGKTSLALAIAAEARVPVVNVEAQEL 524 (979)
Q Consensus 488 P~gVLL~GPPGTGKTtLArAlA~elg~~~i~Is~sdL 524 (979)
+.-+++.|+|||||||+|+.+++.+. .++.++..++
T Consensus 2 ~~liil~G~pGSGKSTla~~L~~~~~-~~~~l~~D~~ 37 (300)
T PHA02530 2 MKIILTVGVPGSGKSTWAREFAAKNP-KAVNVNRDDL 37 (300)
T ss_pred cEEEEEEcCCCCCHHHHHHHHHHHCC-CCEEEeccHH
Confidence 34588999999999999999999983 3344454443
No 456
>PRK00889 adenylylsulfate kinase; Provisional
Probab=95.97 E-value=0.022 Score=58.35 Aligned_cols=37 Identities=30% Similarity=0.422 Sum_probs=29.5
Q ss_pred CceeEecCCCCCChHHHHHHHHHHc---CCCEEEeechhh
Q 035561 488 PRGVLIVGERGTGKTSLALAIAAEA---RVPVVNVEAQEL 524 (979)
Q Consensus 488 P~gVLL~GPPGTGKTtLArAlA~el---g~~~i~Is~sdL 524 (979)
+.-+.|.|+||+||||+|+.++..+ +..+..+++..+
T Consensus 4 g~~i~~~G~~GsGKST~a~~la~~l~~~g~~v~~id~D~~ 43 (175)
T PRK00889 4 GVTVWFTGLSGAGKTTIARALAEKLREAGYPVEVLDGDAV 43 (175)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEcCccH
Confidence 4568899999999999999999987 445666666544
No 457
>PF02562 PhoH: PhoH-like protein; InterPro: IPR003714 PhoH is a cytoplasmic protein and predicted ATPase that is induced by phosphate starvation and belongings to the phosphate regulon (pho) in Escherichia coli [].; GO: 0005524 ATP binding; PDB: 3B85_A.
Probab=95.96 E-value=0.0075 Score=64.31 Aligned_cols=23 Identities=57% Similarity=0.615 Sum_probs=18.7
Q ss_pred eeEecCCCCCChHHHHHHHHHHc
Q 035561 490 GVLIVGERGTGKTSLALAIAAEA 512 (979)
Q Consensus 490 gVLL~GPPGTGKTtLArAlA~el 512 (979)
-+.+.||+|||||++|-+.|.++
T Consensus 21 ~v~~~G~AGTGKT~LA~a~Al~~ 43 (205)
T PF02562_consen 21 LVIVNGPAGTGKTFLALAAALEL 43 (205)
T ss_dssp EEEEE--TTSSTTHHHHHHHHHH
T ss_pred eEEEECCCCCcHHHHHHHHHHHH
Confidence 48899999999999999999765
No 458
>PRK08233 hypothetical protein; Provisional
Probab=95.94 E-value=0.007 Score=61.63 Aligned_cols=33 Identities=18% Similarity=0.299 Sum_probs=26.2
Q ss_pred ceeEecCCCCCChHHHHHHHHHHcC-CCEEEeec
Q 035561 489 RGVLIVGERGTGKTSLALAIAAEAR-VPVVNVEA 521 (979)
Q Consensus 489 ~gVLL~GPPGTGKTtLArAlA~elg-~~~i~Is~ 521 (979)
.-|.+.|+||+||||+|+.++..++ .+++..+.
T Consensus 4 ~iI~I~G~~GsGKtTla~~L~~~l~~~~~~~~d~ 37 (182)
T PRK08233 4 KIITIAAVSGGGKTTLTERLTHKLKNSKALYFDR 37 (182)
T ss_pred eEEEEECCCCCCHHHHHHHHHhhCCCCceEEECC
Confidence 3477889999999999999999986 44544444
No 459
>PRK12608 transcription termination factor Rho; Provisional
Probab=95.93 E-value=0.022 Score=65.69 Aligned_cols=24 Identities=42% Similarity=0.397 Sum_probs=21.6
Q ss_pred ceeEecCCCCCChHHHHHHHHHHc
Q 035561 489 RGVLIVGERGTGKTSLALAIAAEA 512 (979)
Q Consensus 489 ~gVLL~GPPGTGKTtLArAlA~el 512 (979)
.-.+|+||||||||++++.+|+.+
T Consensus 134 QR~LIvG~pGtGKTTLl~~la~~i 157 (380)
T PRK12608 134 QRGLIVAPPRAGKTVLLQQIAAAV 157 (380)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHH
Confidence 347999999999999999999876
No 460
>cd02019 NK Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates to nucleosides/nucleotides, nucleoside monophosphates, or sugars. Members of this family play a wide variety of essential roles in nucleotide metabolism, the biosynthesis of coenzymes and aromatic compounds, as well as the metabolism of sugar and sulfate.
Probab=95.90 E-value=0.0099 Score=52.12 Aligned_cols=22 Identities=32% Similarity=0.604 Sum_probs=20.5
Q ss_pred eEecCCCCCChHHHHHHHHHHc
Q 035561 491 VLIVGERGTGKTSLALAIAAEA 512 (979)
Q Consensus 491 VLL~GPPGTGKTtLArAlA~el 512 (979)
+.+.|+||+|||+++++++..+
T Consensus 2 i~i~G~~gsGKst~~~~l~~~l 23 (69)
T cd02019 2 IAITGGSGSGKSTVAKKLAEQL 23 (69)
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 6789999999999999999986
No 461
>PLN03186 DNA repair protein RAD51 homolog; Provisional
Probab=95.90 E-value=0.014 Score=66.72 Aligned_cols=117 Identities=15% Similarity=0.165 Sum_probs=64.3
Q ss_pred CCCCCceeEecCCCCCChHHHHHHHHHHc---------CCCEEEeechhh-hhhh------hccc---------------
Q 035561 484 GARAPRGVLIVGERGTGKTSLALAIAAEA---------RVPVVNVEAQEL-EAGL------WVGQ--------------- 532 (979)
Q Consensus 484 G~~~P~gVLL~GPPGTGKTtLArAlA~el---------g~~~i~Is~sdL-~~~~------~vG~--------------- 532 (979)
|++...-++++|+||||||+++..+|-.. +.++++++...- ..++ ..+.
T Consensus 119 G~~~g~i~~i~G~~g~GKT~l~~~l~~~~~~~~~~gg~~g~vlyIdtE~~f~~eRl~qia~~~~~~~~~~l~~i~~~~~~ 198 (342)
T PLN03186 119 GIETGSITEIYGEFRTGKTQLCHTLCVTCQLPLDQGGGEGKAMYIDTEGTFRPQRLIQIAERFGLNGADVLENVAYARAY 198 (342)
T ss_pred CCcCceEEEEECCCCCCccHHHHHHHHHhhcchhhCCCCceEEEEECCCCccHHHHHHHHHHcCCChhhhccceEEEecC
Confidence 45555667899999999999999887543 136778876541 1000 0000
Q ss_pred chhh----HHHHHHHHHhcCCeEEEEcCccccccccccccCCCchhhHHHHHHHHhhhcccccCCeEEEEecc
Q 035561 533 SASN----VRELFQTARDLAPVIIFVEDFDLFAGVRGQFIHTKQQDHESFINQLLVELDGFEKQDGVVLMATT 601 (979)
Q Consensus 533 ~~~~----Ir~lF~~A~~~aP~ILfIDEIDaL~~~r~~~~~~~~~~~~~iln~LL~~LDg~~~~~~ViVIATT 601 (979)
.... +..+........+.+|+||=|-++.+..-.. .+......+.+.+++..|..+....++.|+.|.
T Consensus 199 ~~e~~~~ll~~~~~~~~~~~~~LIVIDSI~alfr~~~~~-~g~l~~r~~~L~~~l~~L~~lA~~~~vaVviTN 270 (342)
T PLN03186 199 NTDHQSELLLEAASMMAETRFALMIVDSATALYRTEFSG-RGELSARQMHLGKFLRSLQRLADEFGVAVVITN 270 (342)
T ss_pred CHHHHHHHHHHHHHHhhccCCCEEEEeCcHHHHHHHhcC-CccHHHHHHHHHHHHHHHHHHHHHcCCEEEEEc
Confidence 0011 1111122234568999999999886532110 111122334566676666655444556666553
No 462
>cd01125 repA Hexameric Replicative Helicase RepA. RepA is encoded by a plasmid, which is found in most Gram negative bacteria. RepA is a 5'-3' DNA helicase which can utilize ATP, GTP and CTP to a lesser extent.
Probab=95.90 E-value=0.024 Score=61.22 Aligned_cols=21 Identities=43% Similarity=0.580 Sum_probs=18.8
Q ss_pred eEecCCCCCChHHHHHHHHHH
Q 035561 491 VLIVGERGTGKTSLALAIAAE 511 (979)
Q Consensus 491 VLL~GPPGTGKTtLArAlA~e 511 (979)
-+|+||||+|||+|+-.+|-.
T Consensus 4 ~ll~g~~G~GKS~lal~la~~ 24 (239)
T cd01125 4 SALVAPGGTGKSSLLLVLALA 24 (239)
T ss_pred eEEEcCCCCCHHHHHHHHHHH
Confidence 589999999999999998864
No 463
>TIGR02173 cyt_kin_arch cytidylate kinase, putative. Proteins in this family are believed to be cytidylate kinase. Members of this family are found in the archaea and in spirochaetes, and differ considerably from the common bacterial form of cytidylate kinase described by TIGR00017.
Probab=95.90 E-value=0.0067 Score=61.14 Aligned_cols=29 Identities=28% Similarity=0.521 Sum_probs=26.3
Q ss_pred eEecCCCCCChHHHHHHHHHHcCCCEEEe
Q 035561 491 VLIVGERGTGKTSLALAIAAEARVPVVNV 519 (979)
Q Consensus 491 VLL~GPPGTGKTtLArAlA~elg~~~i~I 519 (979)
|.++|++|||||++|+.+|+.+|.+++..
T Consensus 3 I~i~G~~GSGKstia~~la~~lg~~~~~~ 31 (171)
T TIGR02173 3 ITISGPPGSGKTTVAKILAEKLSLKLISA 31 (171)
T ss_pred EEEECCCCCCHHHHHHHHHHHcCCceecH
Confidence 78999999999999999999999987653
No 464
>COG4178 ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only]
Probab=95.88 E-value=0.03 Score=67.98 Aligned_cols=29 Identities=45% Similarity=0.528 Sum_probs=24.9
Q ss_pred CCCCCceeEecCCCCCChHHHHHHHHHHc
Q 035561 484 GARAPRGVLIVGERGTGKTSLALAIAAEA 512 (979)
Q Consensus 484 G~~~P~gVLL~GPPGTGKTtLArAlA~el 512 (979)
.+++...+|+.||+|||||+|.|++|+-.
T Consensus 415 ~v~~G~~llI~G~SG~GKTsLlRaiaGLW 443 (604)
T COG4178 415 EVRPGERLLITGESGAGKTSLLRALAGLW 443 (604)
T ss_pred eeCCCCEEEEECCCCCCHHHHHHHHhccC
Confidence 34556779999999999999999999854
No 465
>PRK13808 adenylate kinase; Provisional
Probab=95.88 E-value=0.044 Score=62.52 Aligned_cols=33 Identities=15% Similarity=0.362 Sum_probs=27.8
Q ss_pred eEecCCCCCChHHHHHHHHHHcCCCEEEeechhhh
Q 035561 491 VLIVGERGTGKTSLALAIAAEARVPVVNVEAQELE 525 (979)
Q Consensus 491 VLL~GPPGTGKTtLArAlA~elg~~~i~Is~sdL~ 525 (979)
|+|+||||+||||+++.||..+|++.+ +..+++
T Consensus 3 Iiv~GpPGSGK~T~a~~LA~~ygl~~i--s~gdlL 35 (333)
T PRK13808 3 LILLGPPGAGKGTQAQRLVQQYGIVQL--STGDML 35 (333)
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCcee--cccHHH
Confidence 899999999999999999999987554 445554
No 466
>PRK13894 conjugal transfer ATPase TrbB; Provisional
Probab=95.87 E-value=0.0091 Score=67.72 Aligned_cols=72 Identities=29% Similarity=0.424 Sum_probs=48.2
Q ss_pred CCceeEecCCCCCChHHHHHHHHHHc-----CCCEEEeec-hhhhh--hh---hcccchhhHHHHHHHHHhcCCeEEEEc
Q 035561 487 APRGVLIVGERGTGKTSLALAIAAEA-----RVPVVNVEA-QELEA--GL---WVGQSASNVRELFQTARDLAPVIIFVE 555 (979)
Q Consensus 487 ~P~gVLL~GPPGTGKTtLArAlA~el-----g~~~i~Is~-sdL~~--~~---~vG~~~~~Ir~lF~~A~~~aP~ILfID 555 (979)
...++++.|++|+||||++++++.+. ...++.+.- .++.. .. +.....-...+++..+....|..|++.
T Consensus 147 ~~~~ilI~G~tGSGKTTll~aL~~~~~~~~~~~rivtIEd~~El~~~~~~~v~~~~~~~~~~~~ll~~aLR~~PD~IivG 226 (319)
T PRK13894 147 AHRNILVIGGTGSGKTTLVNAIINEMVIQDPTERVFIIEDTGEIQCAAENYVQYHTSIDVNMTALLKTTLRMRPDRILVG 226 (319)
T ss_pred cCCeEEEECCCCCCHHHHHHHHHHhhhhcCCCceEEEEcCCCccccCCCCEEEEecCCCCCHHHHHHHHhcCCCCEEEEe
Confidence 45679999999999999999999874 223333221 12210 00 111123357788888988999999999
Q ss_pred Ccc
Q 035561 556 DFD 558 (979)
Q Consensus 556 EID 558 (979)
|+-
T Consensus 227 EiR 229 (319)
T PRK13894 227 EVR 229 (319)
T ss_pred ccC
Confidence 983
No 467
>TIGR00959 ffh signal recognition particle protein. This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.
Probab=95.84 E-value=0.071 Score=62.90 Aligned_cols=37 Identities=30% Similarity=0.402 Sum_probs=29.4
Q ss_pred CCCceeEecCCCCCChHHHHHHHHHHc----CCCEEEeech
Q 035561 486 RAPRGVLIVGERGTGKTSLALAIAAEA----RVPVVNVEAQ 522 (979)
Q Consensus 486 ~~P~gVLL~GPPGTGKTtLArAlA~el----g~~~i~Is~s 522 (979)
..|.-++++|++|+||||++..+|..+ |..+..++|.
T Consensus 97 ~~p~vi~~vG~~GsGKTTtaakLA~~l~~~~g~kV~lV~~D 137 (428)
T TIGR00959 97 KPPTVILMVGLQGSGKTTTCGKLAYYLKKKQGKKVLLVACD 137 (428)
T ss_pred CCCEEEEEECCCCCcHHHHHHHHHHHHHHhCCCeEEEEecc
Confidence 347889999999999999988887763 5667777765
No 468
>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt
Probab=95.84 E-value=0.037 Score=56.55 Aligned_cols=28 Identities=39% Similarity=0.463 Sum_probs=24.1
Q ss_pred CCCCceeEecCCCCCChHHHHHHHHHHc
Q 035561 485 ARAPRGVLIVGERGTGKTSLALAIAAEA 512 (979)
Q Consensus 485 ~~~P~gVLL~GPPGTGKTtLArAlA~el 512 (979)
+.+..-+.|.||+|+|||||++.+++..
T Consensus 24 i~~Ge~~~i~G~nGsGKSTLl~~l~G~~ 51 (166)
T cd03223 24 IKPGDRLLITGPSGTGKSSLFRALAGLW 51 (166)
T ss_pred ECCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 3445668999999999999999999975
No 469
>cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.81 E-value=0.021 Score=58.73 Aligned_cols=27 Identities=33% Similarity=0.444 Sum_probs=22.9
Q ss_pred CCCceeEecCCCCCChHHHHHHHHHHc
Q 035561 486 RAPRGVLIVGERGTGKTSLALAIAAEA 512 (979)
Q Consensus 486 ~~P~gVLL~GPPGTGKTtLArAlA~el 512 (979)
....-+.|.||+|+|||||++++++..
T Consensus 24 ~~G~~~~i~G~nGsGKSTLl~~l~G~~ 50 (178)
T cd03229 24 EAGEIVALLGPSGSGKSTLLRCIAGLE 50 (178)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 344568899999999999999999864
No 470
>KOG0477 consensus DNA replication licensing factor, MCM2 component [Replication, recombination and repair]
Probab=95.80 E-value=0.0029 Score=75.38 Aligned_cols=171 Identities=18% Similarity=0.248 Sum_probs=90.0
Q ss_pred cccCcHHHHHHHHHHHHh--hcChhHHHhcCCCCCceeEecCCCCCChHHHHHHHHHHcCCCEEEeechhhhhhhhcccc
Q 035561 456 DFASVESMREEINEVVAF--LQNPSAFQEMGARAPRGVLIVGERGTGKTSLALAIAAEARVPVVNVEAQELEAGLWVGQS 533 (979)
Q Consensus 456 DIvGleevke~L~eiV~~--L~~p~~f~~lG~~~P~gVLL~GPPGTGKTtLArAlA~elg~~~i~Is~sdL~~~~~vG~~ 533 (979)
.|-|.+++|..+.-.+-- -+++..- ..++--.++||+|-||||||-+.|.+++-....++..--.. .-+|-+
T Consensus 450 sIyGh~~VK~AvAlaLfGGv~kn~~~k--hkvRGDinvLL~GDPGTaKSQFLKY~eK~s~RAV~tTGqGA----SavGLT 523 (854)
T KOG0477|consen 450 SIYGHEDVKRAVALALFGGVPKNPGGK--HKVRGDINVLLLGDPGTAKSQFLKYAEKTSPRAVFTTGQGA----SAVGLT 523 (854)
T ss_pred hhhchHHHHHHHHHHHhcCCccCCCCC--ceeccceeEEEecCCCccHHHHHHHHHhcCcceeEeccCCc----ccccee
Confidence 578999999888633321 2222110 11223357999999999999999999998877766542211 113333
Q ss_pred hhhHH-----HHHHHHHh---cCCeEEEEcCccccccccccccCCCchhhHHH---HH--HHHhhhcccccCCeEEEEec
Q 035561 534 ASNVR-----ELFQTARD---LAPVIIFVEDFDLFAGVRGQFIHTKQQDHESF---IN--QLLVELDGFEKQDGVVLMAT 600 (979)
Q Consensus 534 ~~~Ir-----~lF~~A~~---~aP~ILfIDEIDaL~~~r~~~~~~~~~~~~~i---ln--~LL~~LDg~~~~~~ViVIAT 600 (979)
+...+ ++--+|.+ ...+|-+|||+|.+..+... .-++.+++. ++ -+.+.| +....||||
T Consensus 524 a~v~KdPvtrEWTLEaGALVLADkGvClIDEFDKMndqDRt---SIHEAMEQQSISISKAGIVtsL-----qArctvIAA 595 (854)
T KOG0477|consen 524 AYVRKDPVTREWTLEAGALVLADKGVCLIDEFDKMNDQDRT---SIHEAMEQQSISISKAGIVTSL-----QARCTVIAA 595 (854)
T ss_pred EEEeeCCccceeeeccCeEEEccCceEEeehhhhhcccccc---hHHHHHHhcchhhhhhhHHHHH-----Hhhhhhhee
Confidence 32222 11112211 12478889999988432111 111111111 00 012222 234678888
Q ss_pred ccch-----------h--hchhhhhcCCceeeEeccC---CCCHHHH--HHHHHHHHHhc
Q 035561 601 TRNI-----------K--QIDEALQRPGRMDRIFNLQ---KPTQSER--EKILRIAAQET 642 (979)
Q Consensus 601 TN~p-----------e--~LDpALlRpgRFd~~I~~~---~Pd~eeR--~~IL~~~l~~~ 642 (979)
+|.. + .|-..+++ |||.--.+. .|-.+++ .-++..|.+..
T Consensus 596 anPigGRY~~s~tFaqNV~ltePIlS--RFDiLcVvkD~vd~~~De~lA~fVV~Sh~r~h 653 (854)
T KOG0477|consen 596 ANPIGGRYNPSLTFAQNVDLTEPILS--RFDILCVVKDTVDPVQDEKLAKFVVGSHVRHH 653 (854)
T ss_pred cCCCCCccCCccchhhccccccchhh--hcceeeeeecccCchhHHHHHHHHHHhHhhcC
Confidence 8872 1 34556778 999643332 2333333 34566666654
No 471
>cd03284 ABC_MutS1 MutS1 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clam
Probab=95.77 E-value=0.026 Score=60.41 Aligned_cols=22 Identities=27% Similarity=0.362 Sum_probs=19.8
Q ss_pred ceeEecCCCCCChHHHHHHHHH
Q 035561 489 RGVLIVGERGTGKTSLALAIAA 510 (979)
Q Consensus 489 ~gVLL~GPPGTGKTtLArAlA~ 510 (979)
.-++|+||.|+|||++.+.++.
T Consensus 31 ~~~~l~Gpn~sGKstllr~i~~ 52 (216)
T cd03284 31 QILLITGPNMAGKSTYLRQVAL 52 (216)
T ss_pred eEEEEECCCCCChHHHHHHHHH
Confidence 4588999999999999999974
No 472
>PRK14526 adenylate kinase; Provisional
Probab=95.72 E-value=0.0087 Score=64.00 Aligned_cols=34 Identities=21% Similarity=0.363 Sum_probs=28.0
Q ss_pred eeEecCCCCCChHHHHHHHHHHcCCCEEEeechhhh
Q 035561 490 GVLIVGERGTGKTSLALAIAAEARVPVVNVEAQELE 525 (979)
Q Consensus 490 gVLL~GPPGTGKTtLArAlA~elg~~~i~Is~sdL~ 525 (979)
.++|.|||||||||+++.+|+.++.+.+ ++.+++
T Consensus 2 ~i~l~G~pGsGKsT~a~~La~~~~~~~i--s~G~ll 35 (211)
T PRK14526 2 KLVFLGPPGSGKGTIAKILSNELNYYHI--STGDLF 35 (211)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCcee--ecChHH
Confidence 3889999999999999999999987654 455554
No 473
>PRK06731 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=95.71 E-value=0.072 Score=59.19 Aligned_cols=110 Identities=9% Similarity=0.122 Sum_probs=62.0
Q ss_pred CCceeEecCCCCCChHHHHHHHHHHc---CCCEEEeechhhhh---h---hh---------cccchhhHHHHHHHHHh-c
Q 035561 487 APRGVLIVGERGTGKTSLALAIAAEA---RVPVVNVEAQELEA---G---LW---------VGQSASNVRELFQTARD-L 547 (979)
Q Consensus 487 ~P~gVLL~GPPGTGKTtLArAlA~el---g~~~i~Is~sdL~~---~---~~---------vG~~~~~Ir~lF~~A~~-~ 547 (979)
++..++|+||+|+|||++++.++..+ +..+..+++..... . .+ .......+.+..+.+.. .
T Consensus 74 ~~~~i~~~G~~g~GKTtl~~~l~~~l~~~~~~v~~i~~D~~ri~~~~ql~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~ 153 (270)
T PRK06731 74 EVQTIALIGPTGVGKTTTLAKMAWQFHGKKKTVGFITTDHSRIGTVQQLQDYVKTIGFEVIAVRDEAAMTRALTYFKEEA 153 (270)
T ss_pred CCCEEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHHhhhcCceEEecCCHHHHHHHHHHHHhcC
Confidence 44679999999999999999998876 33344444421100 0 01 11233445555554443 2
Q ss_pred CCeEEEEcCccccccccccccCCCchhhHHHHHHHHhhhcccccCCeEEEEecccchhhch
Q 035561 548 APVIIFVEDFDLFAGVRGQFIHTKQQDHESFINQLLVELDGFEKQDGVVLMATTRNIKQID 608 (979)
Q Consensus 548 aP~ILfIDEIDaL~~~r~~~~~~~~~~~~~iln~LL~~LDg~~~~~~ViVIATTN~pe~LD 608 (979)
...+++||-.... ......+.+|...++.......++|+.+|...+.+.
T Consensus 154 ~~D~ViIDt~Gr~------------~~~~~~l~el~~~~~~~~~~~~~LVl~a~~~~~d~~ 202 (270)
T PRK06731 154 RVDYILIDTAGKN------------YRASETVEEMIETMGQVEPDYICLTLSASMKSKDMI 202 (270)
T ss_pred CCCEEEEECCCCC------------cCCHHHHHHHHHHHhhhCCCeEEEEEcCccCHHHHH
Confidence 4578898886432 112344555555555444444566776665554443
No 474
>PF01583 APS_kinase: Adenylylsulphate kinase; InterPro: IPR002891 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases. Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. This domain contains an ATP binding P-loop motif [].; GO: 0005524 ATP binding, 0016301 kinase activity, 0016772 transferase activity, transferring phosphorus-containing groups, 0000103 sulfate assimilation; PDB: 1M7H_B 1M7G_B 3CR7_B 1D6J_A 2OFW_G 1X6V_B 1XNJ_A 1XJQ_B 2PEY_A 2PEZ_B ....
Probab=95.71 E-value=0.011 Score=60.55 Aligned_cols=38 Identities=26% Similarity=0.375 Sum_probs=31.8
Q ss_pred CceeEecCCCCCChHHHHHHHHHHc---CCCEEEeechhhh
Q 035561 488 PRGVLIVGERGTGKTSLALAIAAEA---RVPVVNVEAQELE 525 (979)
Q Consensus 488 P~gVLL~GPPGTGKTtLArAlA~el---g~~~i~Is~sdL~ 525 (979)
|..|.|+|.||+||||+|+++...+ |.+++.+++..+-
T Consensus 2 g~vIwltGlsGsGKtTlA~~L~~~L~~~g~~~~~LDgD~lR 42 (156)
T PF01583_consen 2 GFVIWLTGLSGSGKTTLARALERRLFARGIKVYLLDGDNLR 42 (156)
T ss_dssp -EEEEEESSTTSSHHHHHHHHHHHHHHTTS-EEEEEHHHHC
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEecCcchh
Confidence 4568999999999999999999877 7889999987764
No 475
>PRK14729 miaA tRNA delta(2)-isopentenylpyrophosphate transferase; Provisional
Probab=95.69 E-value=0.11 Score=58.63 Aligned_cols=162 Identities=12% Similarity=0.142 Sum_probs=81.3
Q ss_pred CceeEecCCCCCChHHHHHHHHHHcCCCEEEeechhhhhhhhcccchhhHHHHHHHHHhcCCeEEEEcCccccccccccc
Q 035561 488 PRGVLIVGERGTGKTSLALAIAAEARVPVVNVEAQELEAGLWVGQSASNVRELFQTARDLAPVIIFVEDFDLFAGVRGQF 567 (979)
Q Consensus 488 P~gVLL~GPPGTGKTtLArAlA~elg~~~i~Is~sdL~~~~~vG~~~~~Ir~lF~~A~~~aP~ILfIDEIDaL~~~r~~~ 567 (979)
++-+++.||.|||||.||-.+|.. +..+++++.-.+..+.-+|...-... + +..-|.= +||-+|--
T Consensus 4 ~~ii~I~GpTasGKS~LAl~LA~~-~~eIIsaDS~QvYr~ldIgTaKpt~e----E-~~~i~Hh-lid~~~p~------- 69 (300)
T PRK14729 4 NKIVFIFGPTAVGKSNILFHFPKG-KAEIINVDSIQVYKEFDIASCKPSKE----L-RKHIKHH-LVDFLEPI------- 69 (300)
T ss_pred CcEEEEECCCccCHHHHHHHHHHh-CCcEEeccHHHHHCCCceecCCCCHH----H-HcCCCee-eeeccCCC-------
Confidence 346899999999999999999999 55777777666654433443332221 1 1122332 34544411
Q ss_pred cCCCchhhHHHHHHHHhhhccccc-C-CeEEEEecccchhhchhhhhcCCceeeEeccCCCCHHHHHHHHHHHHHhccch
Q 035561 568 IHTKQQDHESFINQLLVELDGFEK-Q-DGVVLMATTRNIKQIDEALQRPGRMDRIFNLQKPTQSEREKILRIAAQETMDE 645 (979)
Q Consensus 568 ~~~~~~~~~~iln~LL~~LDg~~~-~-~~ViVIATTN~pe~LDpALlRpgRFd~~I~~~~Pd~eeR~~IL~~~l~~~~~~ 645 (979)
..-...+..+.....++.+.. + -.++|-||.=..+.| +. | ....|.++.+.|..+-+.. ...+..
T Consensus 70 ---e~~sv~~f~~~a~~~i~~i~~~gk~PilvGGTglYi~al----l~-g----l~~~p~~~~~~r~~~~~~~-~~~g~~ 136 (300)
T PRK14729 70 ---KEYNLGIFYKEALKIIKELRQQKKIPIFVGGSAFYFKHL----KY-G----LPSTPPVSSKIRIYVNNLF-TLKGKS 136 (300)
T ss_pred ---CceeHHHHHHHHHHHHHHHHHCCCCEEEEeCchHHHHHH----Hc-C----CCCCCCCCHHHHHHHHHHH-HhcCHH
Confidence 111123344444444444322 2 234444444334433 22 1 1234666777776654433 221111
Q ss_pred h---hhhhhhHHHHHHHcCCCCHHHHHHHHHHHhhhhh
Q 035561 646 E---LIDLVDWRKVAEKTALLRPIELKLVPVALEGSAF 680 (979)
Q Consensus 646 ~---l~~dvdL~~LA~~T~GfsgaDL~~Lv~aa~~aa~ 680 (979)
. ....+|.. ..+.+.+.|...+++++.-...
T Consensus 137 ~l~~~L~~~DP~----~A~~i~pnd~~Ri~RALEv~~~ 170 (300)
T PRK14729 137 YLLEELKRVDFI----RYESINKNDIYRIKRSLEVYYQ 170 (300)
T ss_pred HHHHHHHhcCHH----HHhhCCcCCHHHHHHHHHHHHH
Confidence 1 11122221 2234566788888887766543
No 476
>PF08433 KTI12: Chromatin associated protein KTI12 ; InterPro: IPR013641 This is a family of chromatin associated proteins which interact with the Elongator complex, a component of the elongating form of RNA polymerase II []. The Elongator complex has histone acetyltransferase activity. ; PDB: 3ADB_B 3ADC_B 3A4M_B 3A4N_B 3AM1_A 3A4L_B 3ADD_A.
Probab=95.66 E-value=0.021 Score=63.34 Aligned_cols=70 Identities=17% Similarity=0.254 Sum_probs=39.0
Q ss_pred eEecCCCCCChHHHHHHHHHHc---CCCEEEeechhhhhh--hh-cccchhhHHHHHHHHHh---cCCeEEEEcCcccc
Q 035561 491 VLIVGERGTGKTSLALAIAAEA---RVPVVNVEAQELEAG--LW-VGQSASNVRELFQTARD---LAPVIIFVEDFDLF 560 (979)
Q Consensus 491 VLL~GPPGTGKTtLArAlA~el---g~~~i~Is~sdL~~~--~~-vG~~~~~Ir~lF~~A~~---~aP~ILfIDEIDaL 560 (979)
|+|+|.||+|||++|+.|+..+ +..+..++..++... .| ....++.+|..+..+-. ....|+++|+...+
T Consensus 4 iil~G~P~SGKTt~a~~L~~~~~~~~~~v~~i~~~~~~~~~~~y~~~~~Ek~~R~~l~s~v~r~ls~~~iVI~Dd~nYi 82 (270)
T PF08433_consen 4 IILCGLPCSGKTTRAKELKKYLEEKGKEVVIISDDSLGIDRNDYADSKKEKEARGSLKSAVERALSKDTIVILDDNNYI 82 (270)
T ss_dssp EEEE--TTSSHHHHHHHHHHHHHHTT--EEEE-THHHH-TTSSS--GGGHHHHHHHHHHHHHHHHTT-SEEEE-S---S
T ss_pred EEEEcCCCCcHHHHHHHHHHHHHhcCCEEEEEcccccccchhhhhchhhhHHHHHHHHHHHHHhhccCeEEEEeCCchH
Confidence 7899999999999999999875 567777775554311 12 23345555555444421 23578899998655
No 477
>PRK08099 bifunctional DNA-binding transcriptional repressor/ NMN adenylyltransferase; Provisional
Probab=95.65 E-value=0.022 Score=66.51 Aligned_cols=37 Identities=24% Similarity=0.256 Sum_probs=29.9
Q ss_pred CceeEecCCCCCChHHHHHHHHHHcCCCEEEeechhh
Q 035561 488 PRGVLIVGERGTGKTSLALAIAAEARVPVVNVEAQEL 524 (979)
Q Consensus 488 P~gVLL~GPPGTGKTtLArAlA~elg~~~i~Is~sdL 524 (979)
.+.|.|.|++|||||||+++||..+|.+.+.--+-+.
T Consensus 219 ~~~IvI~G~~gsGKTTL~~~La~~~g~~~v~E~~R~~ 255 (399)
T PRK08099 219 VRTVAILGGESSGKSTLVNKLANIFNTTSAWEYGREY 255 (399)
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHHhCCCeeeeccHHH
Confidence 3569999999999999999999999987655433333
No 478
>PRK10436 hypothetical protein; Provisional
Probab=95.60 E-value=0.034 Score=66.17 Aligned_cols=94 Identities=15% Similarity=0.315 Sum_probs=58.4
Q ss_pred CCCCCcccCcHHHHHHHHHHHHhhcChhHHHhcCCCCCc-eeEecCCCCCChHHHHHHHHHHcC---CCEEEeech-hhh
Q 035561 451 PIPLKDFASVESMREEINEVVAFLQNPSAFQEMGARAPR-GVLIVGERGTGKTSLALAIAAEAR---VPVVNVEAQ-ELE 525 (979)
Q Consensus 451 ~~~f~DIvGleevke~L~eiV~~L~~p~~f~~lG~~~P~-gVLL~GPPGTGKTtLArAlA~elg---~~~i~Is~s-dL~ 525 (979)
..+++++.-.++..+.+++.+ ..|. -+|++||+|+||||+..++..+.+ .+++.+--. ++.
T Consensus 194 ~~~L~~LG~~~~~~~~l~~~~--------------~~~~GliLvtGpTGSGKTTtL~a~l~~~~~~~~~i~TiEDPvE~~ 259 (462)
T PRK10436 194 ALDLETLGMTPAQLAQFRQAL--------------QQPQGLILVTGPTGSGKTVTLYSALQTLNTAQINICSVEDPVEIP 259 (462)
T ss_pred CCCHHHcCcCHHHHHHHHHHH--------------HhcCCeEEEECCCCCChHHHHHHHHHhhCCCCCEEEEecCCcccc
Confidence 357888877776666666443 1123 388999999999999988877764 334443211 211
Q ss_pred hh----hhcc-cchhhHHHHHHHHHhcCCeEEEEcCcc
Q 035561 526 AG----LWVG-QSASNVRELFQTARDLAPVIIFVEDFD 558 (979)
Q Consensus 526 ~~----~~vG-~~~~~Ir~lF~~A~~~aP~ILfIDEID 558 (979)
-. .-++ ............+....|.||++.||-
T Consensus 260 l~gi~Q~~v~~~~g~~f~~~lr~~LR~dPDvI~vGEIR 297 (462)
T PRK10436 260 LAGINQTQIHPKAGLTFQRVLRALLRQDPDVIMVGEIR 297 (462)
T ss_pred CCCcceEeeCCccCcCHHHHHHHHhcCCCCEEEECCCC
Confidence 00 0011 112345666777777899999999983
No 479
>PF01926 MMR_HSR1: 50S ribosome-binding GTPase; InterPro: IPR002917 Human HSR1, has been localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has both prokaryote and eukaryote members [].; GO: 0005525 GTP binding, 0005622 intracellular; PDB: 2DWQ_B 2DBY_A 3CNN_A 3CNO_A 3CNL_A 3IBY_A 1PUI_B 1WXQ_A 1LNZ_A 3GEE_A ....
Probab=95.58 E-value=0.034 Score=52.72 Aligned_cols=21 Identities=33% Similarity=0.577 Sum_probs=19.6
Q ss_pred eEecCCCCCChHHHHHHHHHH
Q 035561 491 VLIVGERGTGKTSLALAIAAE 511 (979)
Q Consensus 491 VLL~GPPGTGKTtLArAlA~e 511 (979)
|+|.|+||+|||||..++.+.
T Consensus 2 V~iiG~~~~GKSTlin~l~~~ 22 (116)
T PF01926_consen 2 VAIIGRPNVGKSTLINALTGK 22 (116)
T ss_dssp EEEEESTTSSHHHHHHHHHTS
T ss_pred EEEECCCCCCHHHHHHHHhcc
Confidence 789999999999999999974
No 480
>PRK14737 gmk guanylate kinase; Provisional
Probab=95.57 E-value=0.018 Score=60.42 Aligned_cols=26 Identities=27% Similarity=0.466 Sum_probs=23.0
Q ss_pred CCceeEecCCCCCChHHHHHHHHHHc
Q 035561 487 APRGVLIVGERGTGKTSLALAIAAEA 512 (979)
Q Consensus 487 ~P~gVLL~GPPGTGKTtLArAlA~el 512 (979)
.|+-++|+||||+|||+|++.+.+..
T Consensus 3 ~~~~ivl~GpsG~GK~tl~~~l~~~~ 28 (186)
T PRK14737 3 SPKLFIISSVAGGGKSTIIQALLEEH 28 (186)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHhcC
Confidence 35668999999999999999998876
No 481
>PRK12339 2-phosphoglycerate kinase; Provisional
Probab=95.57 E-value=0.011 Score=62.53 Aligned_cols=35 Identities=29% Similarity=0.303 Sum_probs=28.7
Q ss_pred CceeEecCCCCCChHHHHHHHHHHcCCCEEEeechhh
Q 035561 488 PRGVLIVGERGTGKTSLALAIAAEARVPVVNVEAQEL 524 (979)
Q Consensus 488 P~gVLL~GPPGTGKTtLArAlA~elg~~~i~Is~sdL 524 (979)
|.-++++|+||+||||+|+.+|.+++.++ +..+|+
T Consensus 3 ~~~i~i~G~~G~GKst~a~~l~~~~~~~~--~~~~D~ 37 (197)
T PRK12339 3 STIHFIGGIPGVGKTSISGYIARHRAIDI--VLSGDY 37 (197)
T ss_pred ceEEEEECCCCCCHHHHHHHHHHhcCCeE--EehhHH
Confidence 45689999999999999999999998765 344444
No 482
>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
Probab=95.56 E-value=0.042 Score=58.94 Aligned_cols=25 Identities=28% Similarity=0.517 Sum_probs=21.3
Q ss_pred CCCceeEecCCCCCChHHHHHHHHH
Q 035561 486 RAPRGVLIVGERGTGKTSLALAIAA 510 (979)
Q Consensus 486 ~~P~gVLL~GPPGTGKTtLArAlA~ 510 (979)
....-+.+.||+||||||+.|++..
T Consensus 26 ~~Gevv~iiGpSGSGKSTlLRclN~ 50 (240)
T COG1126 26 EKGEVVVIIGPSGSGKSTLLRCLNG 50 (240)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHC
Confidence 3445688999999999999999976
No 483
>TIGR00150 HI0065_YjeE ATPase, YjeE family. Members of this family have a conserved nucleotide-binding motif GXXGXGKT and a nucleotide-binding fold. Member protein YjeE of Haemophilus influenzae (HI0065) was shown to have ATPase activity.
Probab=95.55 E-value=0.013 Score=58.46 Aligned_cols=30 Identities=27% Similarity=0.370 Sum_probs=26.1
Q ss_pred CCCceeEecCCCCCChHHHHHHHHHHcCCC
Q 035561 486 RAPRGVLIVGERGTGKTSLALAIAAEARVP 515 (979)
Q Consensus 486 ~~P~gVLL~GPPGTGKTtLArAlA~elg~~ 515 (979)
+...-++|.|+.|+|||+++|.+++.++..
T Consensus 20 ~~~~~i~l~G~lGaGKTtl~~~l~~~lg~~ 49 (133)
T TIGR00150 20 DFGTVVLLKGDLGAGKTTLVQGLLQGLGIQ 49 (133)
T ss_pred CCCCEEEEEcCCCCCHHHHHHHHHHHcCCC
Confidence 344568999999999999999999999865
No 484
>TIGR02655 circ_KaiC circadian clock protein KaiC. Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor.
Probab=95.53 E-value=0.043 Score=65.67 Aligned_cols=39 Identities=31% Similarity=0.394 Sum_probs=32.0
Q ss_pred CCCCCceeEecCCCCCChHHHHHHHHHH----cCCCEEEeech
Q 035561 484 GARAPRGVLIVGERGTGKTSLALAIAAE----ARVPVVNVEAQ 522 (979)
Q Consensus 484 G~~~P~gVLL~GPPGTGKTtLArAlA~e----lg~~~i~Is~s 522 (979)
|++..+.+|++||||||||++|..++.+ .|.+.++++..
T Consensus 17 Glp~g~~~Li~G~pGsGKT~la~qfl~~g~~~~ge~~lyvs~e 59 (484)
T TIGR02655 17 GLPIGRSTLVSGTSGTGKTLFSIQFLYNGIIHFDEPGVFVTFE 59 (484)
T ss_pred CCCCCeEEEEEcCCCCCHHHHHHHHHHHHHHhCCCCEEEEEEe
Confidence 6777888999999999999999988543 26788888764
No 485
>TIGR01448 recD_rel helicase, putative, RecD/TraA family. This model describes a family similar to RecD, the exodeoxyribonuclease V alpha chain of TIGR01447. Members of this family, however, are not found in a context of RecB and RecC and are longer by about 200 amino acids at the amino end. Chlamydia muridarum has both a member of this family and a RecD.
Probab=95.53 E-value=0.037 Score=69.33 Aligned_cols=98 Identities=24% Similarity=0.345 Sum_probs=56.8
Q ss_pred eeEecCCCCCChHHHHHHHHHHc---C--CCEEEeechhhhh---hhhcccchhhHHHHHHHHH----------hcCCeE
Q 035561 490 GVLIVGERGTGKTSLALAIAAEA---R--VPVVNVEAQELEA---GLWVGQSASNVRELFQTAR----------DLAPVI 551 (979)
Q Consensus 490 gVLL~GPPGTGKTtLArAlA~el---g--~~~i~Is~sdL~~---~~~vG~~~~~Ir~lF~~A~----------~~aP~I 551 (979)
-++|.|+||||||++++++...+ + .+++.+..+.-.+ ....|..+..+..++.... .....+
T Consensus 340 ~~iitGgpGTGKTt~l~~i~~~~~~~~~~~~v~l~ApTg~AA~~L~e~~g~~a~Tih~lL~~~~~~~~~~~~~~~~~~~l 419 (720)
T TIGR01448 340 VVILTGGPGTGKTTITRAIIELAEELGGLLPVGLAAPTGRAAKRLGEVTGLTASTIHRLLGYGPDTFRHNHLEDPIDCDL 419 (720)
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHHcCCCceEEEEeCchHHHHHHHHhcCCccccHHHHhhccCCccchhhhhccccCCE
Confidence 58999999999999999987755 3 3444333221100 1113444455555554311 123579
Q ss_pred EEEcCccccccccccccCCCchhhHHHHHHHHhhhcccccCCeEEEEecccch
Q 035561 552 IFVEDFDLFAGVRGQFIHTKQQDHESFINQLLVELDGFEKQDGVVLMATTRNI 604 (979)
Q Consensus 552 LfIDEIDaL~~~r~~~~~~~~~~~~~iln~LL~~LDg~~~~~~ViVIATTN~p 604 (979)
|++||+.-+ ....+..|+..+ ..+..+++++=.+..
T Consensus 420 lIvDEaSMv--------------d~~~~~~Ll~~~---~~~~rlilvGD~~QL 455 (720)
T TIGR01448 420 LIVDESSMM--------------DTWLALSLLAAL---PDHARLLLVGDTDQL 455 (720)
T ss_pred EEEeccccC--------------CHHHHHHHHHhC---CCCCEEEEECccccc
Confidence 999998654 223445555543 345567777755553
No 486
>PF05970 PIF1: PIF1-like helicase; InterPro: IPR010285 This entry represents PIF1 helicase and related proteins. The PIF1 helicase inhibits telomerase activity and is cell cycle regulated [, ].
Probab=95.53 E-value=0.051 Score=62.66 Aligned_cols=39 Identities=26% Similarity=0.305 Sum_probs=29.1
Q ss_pred CCCceeEecCCCCCChHHHHHHHHHHcC---CCEEEeechhh
Q 035561 486 RAPRGVLIVGERGTGKTSLALAIAAEAR---VPVVNVEAQEL 524 (979)
Q Consensus 486 ~~P~gVLL~GPPGTGKTtLArAlA~elg---~~~i~Is~sdL 524 (979)
..|..+.+.||.|||||++.+++...+. ..++.+..+.+
T Consensus 20 ~~~~~~fv~G~~GtGKs~l~~~i~~~~~~~~~~~~~~a~tg~ 61 (364)
T PF05970_consen 20 EEGLNFFVTGPAGTGKSFLIKAIIDYLRSRGKKVLVTAPTGI 61 (364)
T ss_pred cCCcEEEEEcCCCCChhHHHHHHHHHhccccceEEEecchHH
Confidence 4567899999999999999999988774 33444443333
No 487
>PLN02459 probable adenylate kinase
Probab=95.52 E-value=0.013 Score=64.69 Aligned_cols=36 Identities=22% Similarity=0.314 Sum_probs=29.1
Q ss_pred CceeEecCCCCCChHHHHHHHHHHcCCCEEEeechhhh
Q 035561 488 PRGVLIVGERGTGKTSLALAIAAEARVPVVNVEAQELE 525 (979)
Q Consensus 488 P~gVLL~GPPGTGKTtLArAlA~elg~~~i~Is~sdL~ 525 (979)
|..++|.||||+||||+++.+|+.++.+. +++.+++
T Consensus 29 ~~~ii~~G~PGsGK~T~a~~la~~~~~~~--is~gdll 64 (261)
T PLN02459 29 NVNWVFLGCPGVGKGTYASRLSKLLGVPH--IATGDLV 64 (261)
T ss_pred ccEEEEECCCCCCHHHHHHHHHHHhCCcE--EeCcHHH
Confidence 34588899999999999999999998654 4555554
No 488
>COG0529 CysC Adenylylsulfate kinase and related kinases [Inorganic ion transport and metabolism]
Probab=95.52 E-value=0.045 Score=57.04 Aligned_cols=41 Identities=17% Similarity=0.298 Sum_probs=35.6
Q ss_pred CCCCceeEecCCCCCChHHHHHHHHHHc---CCCEEEeechhhh
Q 035561 485 ARAPRGVLIVGERGTGKTSLALAIAAEA---RVPVVNVEAQELE 525 (979)
Q Consensus 485 ~~~P~gVLL~GPPGTGKTtLArAlA~el---g~~~i~Is~sdL~ 525 (979)
...|..+.|+|.+|+||||+|.++...+ |.+++.+++..+-
T Consensus 20 ~~~~~viW~TGLSGsGKSTiA~ale~~L~~~G~~~y~LDGDnvR 63 (197)
T COG0529 20 GQKGAVIWFTGLSGSGKSTIANALEEKLFAKGYHVYLLDGDNVR 63 (197)
T ss_pred CCCCeEEEeecCCCCCHHHHHHHHHHHHHHcCCeEEEecChhHh
Confidence 3456779999999999999999999977 8999999987764
No 489
>TIGR02524 dot_icm_DotB Dot/Icm secretion system ATPase DotB. Members of this protein family are the DotB component of Dot/Icm secretion systems, as found in obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii. While this system resembles type IV secretion systems and has been called a form of type IV, the liturature now seems to favor calling this the Dot/Icm system. This family is most closely related to TraJ proteins of plasmid transfer, rather than to proteins of other type IV secretion systems.
Probab=95.52 E-value=0.028 Score=64.78 Aligned_cols=70 Identities=26% Similarity=0.260 Sum_probs=43.0
Q ss_pred ceeEecCCCCCChHHHHHHHHHHcC------CCEEEeec-hhhhhhh-----------hcccchhhHHHHHHHHHhcCCe
Q 035561 489 RGVLIVGERGTGKTSLALAIAAEAR------VPVVNVEA-QELEAGL-----------WVGQSASNVRELFQTARDLAPV 550 (979)
Q Consensus 489 ~gVLL~GPPGTGKTtLArAlA~elg------~~~i~Is~-sdL~~~~-----------~vG~~~~~Ir~lF~~A~~~aP~ 550 (979)
..++++||+|+||||+++++++... ..++.+.- .++.... -++............+....|.
T Consensus 135 glilI~GpTGSGKTTtL~aLl~~i~~~~~~~~~Ivt~EdpiE~~~~~~~~~~~~v~Q~~v~~~~~~~~~~l~~aLR~~Pd 214 (358)
T TIGR02524 135 GIVFITGATGSGKSTLLAAIIRELAEAPDSHRKILTYEAPIEFVYDEIETISASVCQSEIPRHLNNFAAGVRNALRRKPH 214 (358)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHhhcCCCCcEEEEeCCCceEeccccccccceeeeeeccccccCHHHHHHHHhccCCC
Confidence 4589999999999999999998762 22333211 1111000 0111112344555667777999
Q ss_pred EEEEcCcc
Q 035561 551 IIFVEDFD 558 (979)
Q Consensus 551 ILfIDEID 558 (979)
++++.|+-
T Consensus 215 ~i~vGEiR 222 (358)
T TIGR02524 215 AILVGEAR 222 (358)
T ss_pred EEeeeeeC
Confidence 99999973
No 490
>PRK10078 ribose 1,5-bisphosphokinase; Provisional
Probab=95.50 E-value=0.012 Score=61.20 Aligned_cols=29 Identities=24% Similarity=0.488 Sum_probs=24.8
Q ss_pred ceeEecCCCCCChHHHHHHHHHHcCCCEE
Q 035561 489 RGVLIVGERGTGKTSLALAIAAEARVPVV 517 (979)
Q Consensus 489 ~gVLL~GPPGTGKTtLArAlA~elg~~~i 517 (979)
..+.|.||+|+||||+++.++...+.+++
T Consensus 3 ~~i~l~G~sGsGKsTl~~~l~~~~~~~~~ 31 (186)
T PRK10078 3 KLIWLMGPSGSGKDSLLAALRQREQTQLL 31 (186)
T ss_pred cEEEEECCCCCCHHHHHHHHhccCCCeEE
Confidence 35889999999999999999998876543
No 491
>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]
Probab=95.50 E-value=0.028 Score=61.95 Aligned_cols=26 Identities=27% Similarity=0.328 Sum_probs=21.9
Q ss_pred CCceeEecCCCCCChHHHHHHHHHHc
Q 035561 487 APRGVLIVGERGTGKTSLALAIAAEA 512 (979)
Q Consensus 487 ~P~gVLL~GPPGTGKTtLArAlA~el 512 (979)
...-+-|.||.|||||||.|++++-+
T Consensus 27 ~G~i~~iiGpNG~GKSTLLk~l~g~l 52 (258)
T COG1120 27 KGEITGILGPNGSGKSTLLKCLAGLL 52 (258)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhccC
Confidence 33457789999999999999999955
No 492
>PRK12727 flagellar biosynthesis regulator FlhF; Provisional
Probab=95.48 E-value=0.065 Score=64.47 Aligned_cols=26 Identities=27% Similarity=0.359 Sum_probs=22.1
Q ss_pred CCceeEecCCCCCChHHHHHHHHHHc
Q 035561 487 APRGVLIVGERGTGKTSLALAIAAEA 512 (979)
Q Consensus 487 ~P~gVLL~GPPGTGKTtLArAlA~el 512 (979)
....+.|+||+|+||||++..+|..+
T Consensus 349 ~G~vIaLVGPtGvGKTTtaakLAa~l 374 (559)
T PRK12727 349 RGGVIALVGPTGAGKTTTIAKLAQRF 374 (559)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHH
Confidence 34678899999999999999998754
No 493
>PF13479 AAA_24: AAA domain
Probab=95.48 E-value=0.021 Score=60.92 Aligned_cols=68 Identities=21% Similarity=0.297 Sum_probs=39.2
Q ss_pred CceeEecCCCCCChHHHHHHHHHHcCCCEEEeechhh---hh-----hhhcccchhhHHHHHHHHH--hcCCeEEEEcCc
Q 035561 488 PRGVLIVGERGTGKTSLALAIAAEARVPVVNVEAQEL---EA-----GLWVGQSASNVRELFQTAR--DLAPVIIFVEDF 557 (979)
Q Consensus 488 P~gVLL~GPPGTGKTtLArAlA~elg~~~i~Is~sdL---~~-----~~~vG~~~~~Ir~lF~~A~--~~aP~ILfIDEI 557 (979)
|..++|||+||+|||++|..+ +.+ +.+++..= .. ..+.-.+-..+.+.+..+. ...-..|+||-+
T Consensus 3 ~~~~lIyG~~G~GKTt~a~~~----~k~-l~id~E~g~~~~~~~~~~~~i~i~s~~~~~~~~~~l~~~~~~y~tiVIDsi 77 (213)
T PF13479_consen 3 PIKILIYGPPGSGKTTLAASL----PKP-LFIDTENGSDSLKFLDDGDVIPITSWEDFLEALDELEEDEADYDTIVIDSI 77 (213)
T ss_pred ceEEEEECCCCCCHHHHHHhC----CCe-EEEEeCCCccchhhhcCCCeeCcCCHHHHHHHHHHHHhccCCCCEEEEECH
Confidence 456999999999999999888 333 23333211 00 0011113334555554432 234579999988
Q ss_pred ccc
Q 035561 558 DLF 560 (979)
Q Consensus 558 DaL 560 (979)
+.+
T Consensus 78 s~~ 80 (213)
T PF13479_consen 78 SWL 80 (213)
T ss_pred HHH
Confidence 764
No 494
>PF13086 AAA_11: AAA domain; PDB: 2XZL_A 2XZO_A 2WJY_A 2WJV_A 2XZP_A 2GK6_A 2GK7_A 2GJK_A.
Probab=95.44 E-value=0.0093 Score=62.24 Aligned_cols=22 Identities=45% Similarity=0.578 Sum_probs=17.4
Q ss_pred eEecCCCCCChHHHHHHHHHHc
Q 035561 491 VLIVGERGTGKTSLALAIAAEA 512 (979)
Q Consensus 491 VLL~GPPGTGKTtLArAlA~el 512 (979)
.++.||||||||+++..++..+
T Consensus 20 ~~i~GpPGTGKT~~l~~~i~~~ 41 (236)
T PF13086_consen 20 TLIQGPPGTGKTTTLASIIAQL 41 (236)
T ss_dssp EEEE-STTSSHHHHHHHHHHHH
T ss_pred EEEECCCCCChHHHHHHHHHHh
Confidence 8899999999998777766655
No 495
>PRK05480 uridine/cytidine kinase; Provisional
Probab=95.44 E-value=0.017 Score=60.93 Aligned_cols=38 Identities=26% Similarity=0.348 Sum_probs=29.6
Q ss_pred CCceeEecCCCCCChHHHHHHHHHHcC-CCEEEeechhh
Q 035561 487 APRGVLIVGERGTGKTSLALAIAAEAR-VPVVNVEAQEL 524 (979)
Q Consensus 487 ~P~gVLL~GPPGTGKTtLArAlA~elg-~~~i~Is~sdL 524 (979)
.|.-|.|.|++|||||||+++|++.++ ..+..++..++
T Consensus 5 ~~~iI~I~G~sGsGKTTl~~~l~~~l~~~~~~~i~~D~~ 43 (209)
T PRK05480 5 KPIIIGIAGGSGSGKTTVASTIYEELGDESIAVIPQDSY 43 (209)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHhCCCceEEEeCCcc
Confidence 456689999999999999999999984 34555555444
No 496
>PF08423 Rad51: Rad51; InterPro: IPR013632 This domain is found at the C terminus of the DNA repair and recombination protein Rad51. It is critical for DNA binding []. Rad51 is a homologue of the bacterial RecA protein. Rad51 and RecA share a core ATPase domain.; PDB: 2ZUC_A 2Z43_C 2ZUD_B 2DFL_A 2ZUB_A 2BKE_A 2KZ3_A 2CVH_B 2CVF_B 1SZP_D ....
Probab=95.42 E-value=0.024 Score=62.39 Aligned_cols=116 Identities=18% Similarity=0.271 Sum_probs=63.1
Q ss_pred EecCCCCCChHHHHHHHHHHcC---------CCEEEeechh-hhhhh-------hcccc--------------hhhHHHH
Q 035561 492 LIVGERGTGKTSLALAIAAEAR---------VPVVNVEAQE-LEAGL-------WVGQS--------------ASNVREL 540 (979)
Q Consensus 492 LL~GPPGTGKTtLArAlA~elg---------~~~i~Is~sd-L~~~~-------~vG~~--------------~~~Ir~l 540 (979)
=|+||||||||.++-.+|-... ..+++|+... |...+ +.-.. ...+..+
T Consensus 42 Ei~G~~gsGKTql~l~l~~~~~l~~~~~g~~~~vvyidTe~~f~~~Rl~~i~~~~~~~~~~~l~~I~v~~~~~~~~l~~~ 121 (256)
T PF08423_consen 42 EIVGESGSGKTQLCLQLAVNVQLPEEIGGLGGKVVYIDTEGTFSPERLQQIAERFGLDPEEILDNIFVIRVFDLEELLEL 121 (256)
T ss_dssp EEEESTTSSHHHHHHHHHHHTTSGGCTTSSSSEEEEEESSSSS-HHHHHHHHHHTTS-HHHHHHTEEEEE-SSHHHHHHH
T ss_pred EEEEecccccchHHHHHHHHhhcccccccCCCceEEEeCCCCCCHHHHHHHhhccccccchhhhceeeeecCCHHHHHHH
Confidence 3999999999999998887653 3478887643 21111 10000 0011111
Q ss_pred H----HHHHhcCCeEEEEcCccccccccccccCCCchhhHHHHHHHHhhhcccccCCeEEEEecccchhhch
Q 035561 541 F----QTARDLAPVIIFVEDFDLFAGVRGQFIHTKQQDHESFINQLLVELDGFEKQDGVVLMATTRNIKQID 608 (979)
Q Consensus 541 F----~~A~~~aP~ILfIDEIDaL~~~r~~~~~~~~~~~~~iln~LL~~LDg~~~~~~ViVIATTN~pe~LD 608 (979)
. .......-.+|+||-|-++.+..-.. .+......+.+..++..|..+....++.|+.|..-...++
T Consensus 122 L~~l~~~l~~~~ikLIVIDSIaalfr~e~~~-~~~~~~R~~~L~~~~~~L~~lA~~~~iaVvvTNqv~~~~~ 192 (256)
T PF08423_consen 122 LEQLPKLLSESKIKLIVIDSIAALFRSEFSG-RGDLAERQRMLARLARILKRLARKYNIAVVVTNQVTTKID 192 (256)
T ss_dssp HHHHHHHHHHSCEEEEEEETSSHHHHHHSGS-TTTHHHHHHHHHHHHHHHHHHHHHTT-EEEEEEEECSSTT
T ss_pred HHHHHhhccccceEEEEecchHHHHHHHHcc-chhhHHHHHHHHHHHHHHHHHHHhCCceEEeeceeeecCC
Confidence 1 11223356899999999987632111 1122334566777766666665555566665543333443
No 497
>COG0467 RAD55 RecA-superfamily ATPases implicated in signal transduction [Signal transduction mechanisms]
Probab=95.38 E-value=0.018 Score=62.91 Aligned_cols=41 Identities=41% Similarity=0.495 Sum_probs=34.3
Q ss_pred CCCCCceeEecCCCCCChHHHHHHHHHHc---CCCEEEeechhh
Q 035561 484 GARAPRGVLIVGERGTGKTSLALAIAAEA---RVPVVNVEAQEL 524 (979)
Q Consensus 484 G~~~P~gVLL~GPPGTGKTtLArAlA~el---g~~~i~Is~sdL 524 (979)
|++..+.+|++|+||||||+++..++.+. |.|+++++..+-
T Consensus 19 G~p~g~~~lI~G~pGsGKT~f~~qfl~~~~~~ge~vlyvs~~e~ 62 (260)
T COG0467 19 GLPRGSVVLITGPPGTGKTIFALQFLYEGAREGEPVLYVSTEES 62 (260)
T ss_pred CCcCCcEEEEEcCCCCcHHHHHHHHHHHHHhcCCcEEEEEecCC
Confidence 67777889999999999999998887654 788999887653
No 498
>PRK04220 2-phosphoglycerate kinase; Provisional
Probab=95.38 E-value=0.034 Score=62.58 Aligned_cols=32 Identities=25% Similarity=0.500 Sum_probs=28.8
Q ss_pred CCCCceeEecCCCCCChHHHHHHHHHHcCCCE
Q 035561 485 ARAPRGVLIVGERGTGKTSLALAIAAEARVPV 516 (979)
Q Consensus 485 ~~~P~gVLL~GPPGTGKTtLArAlA~elg~~~ 516 (979)
.+.|.-+++.|++|||||++|+.+|..+|.+.
T Consensus 89 ~~~p~iIlI~G~sgsGKStlA~~La~~l~~~~ 120 (301)
T PRK04220 89 SKEPIIILIGGASGVGTSTIAFELASRLGIRS 120 (301)
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHHhCCCE
Confidence 35678899999999999999999999999884
No 499
>TIGR02538 type_IV_pilB type IV-A pilus assembly ATPase PilB. This model describes a protein of type IV pilus biogenesis designated PilB in Pseudomonas aeruginosa but PilF in Neisseria gonorrhoeae; the more common usage, reflected here, is PilB. This protein is an ATPase involved in protein export for pilin assembly and is closely related to GspE (TIGR02533) of type II secretion, also called the main terminal branch of the general secretion pathway. Note that type IV pilus systems are often divided into type IV-A and IV-B, with the latter group including bundle-forming pilus, mannose-sensitive hemagglutinin, etc. Members of this family are found in type IV-A systems.
Probab=95.37 E-value=0.033 Score=67.93 Aligned_cols=94 Identities=18% Similarity=0.242 Sum_probs=58.4
Q ss_pred CCCCCcccCcHHHHHHHHHHHHhhcChhHHHhcCCCCCc-eeEecCCCCCChHHHHHHHHHHcC---CCEEEeech-hhh
Q 035561 451 PIPLKDFASVESMREEINEVVAFLQNPSAFQEMGARAPR-GVLIVGERGTGKTSLALAIAAEAR---VPVVNVEAQ-ELE 525 (979)
Q Consensus 451 ~~~f~DIvGleevke~L~eiV~~L~~p~~f~~lG~~~P~-gVLL~GPPGTGKTtLArAlA~elg---~~~i~Is~s-dL~ 525 (979)
..+++++.-.++..+.+.+.+. .|. .||++||+|+||||+..++.+.++ .+++.+--. ++.
T Consensus 292 ~~~l~~lg~~~~~~~~l~~~~~--------------~~~Glilv~G~tGSGKTTtl~a~l~~~~~~~~~i~tiEdpvE~~ 357 (564)
T TIGR02538 292 QLDIDKLGFEPDQKALFLEAIH--------------KPQGMVLVTGPTGSGKTVSLYTALNILNTEEVNISTAEDPVEIN 357 (564)
T ss_pred cCCHHHcCCCHHHHHHHHHHHH--------------hcCCeEEEECCCCCCHHHHHHHHHHhhCCCCceEEEecCCceec
Confidence 3567888777766666654431 122 378999999999999988888774 234433211 110
Q ss_pred h----hhhc-ccchhhHHHHHHHHHhcCCeEEEEcCcc
Q 035561 526 A----GLWV-GQSASNVRELFQTARDLAPVIIFVEDFD 558 (979)
Q Consensus 526 ~----~~~v-G~~~~~Ir~lF~~A~~~aP~ILfIDEID 558 (979)
- ..-+ .............+....|.||++.|+-
T Consensus 358 ~~~~~q~~v~~~~g~~~~~~l~~~LR~dPDvI~vGEiR 395 (564)
T TIGR02538 358 LPGINQVNVNPKIGLTFAAALRSFLRQDPDIIMVGEIR 395 (564)
T ss_pred CCCceEEEeccccCCCHHHHHHHHhccCCCEEEeCCCC
Confidence 0 0001 1112345666777778899999999984
No 500
>PF09848 DUF2075: Uncharacterized conserved protein (DUF2075); InterPro: IPR018647 This domain, found in putative ATP/GTP binding proteins, has no known function. It is found in some proteins described as Schlafen family members, which may have a role in hematopoeitic cell differentiation [].
Probab=95.34 E-value=0.022 Score=65.26 Aligned_cols=23 Identities=57% Similarity=0.735 Sum_probs=21.4
Q ss_pred eeEecCCCCCChHHHHHHHHHHc
Q 035561 490 GVLIVGERGTGKTSLALAIAAEA 512 (979)
Q Consensus 490 gVLL~GPPGTGKTtLArAlA~el 512 (979)
-+++.|.||||||.||-.++.++
T Consensus 3 v~~I~G~aGTGKTvla~~l~~~l 25 (352)
T PF09848_consen 3 VILITGGAGTGKTVLALNLAKEL 25 (352)
T ss_pred EEEEEecCCcCHHHHHHHHHHHh
Confidence 47899999999999999999988
Done!