Query 035561
Match_columns 979
No_of_seqs 544 out of 3739
Neff 5.6
Searched_HMMs 29240
Date Mon Mar 25 06:12:27 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/035561.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/035561hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2ce7_A Cell division protein F 100.0 7.6E-79 2.6E-83 707.4 42.2 441 449-950 10-458 (476)
2 2dhr_A FTSH; AAA+ protein, hex 100.0 4.1E-75 1.4E-79 679.6 38.8 441 450-953 26-471 (499)
3 4b4t_J 26S protease regulatory 100.0 3.5E-48 1.2E-52 439.9 21.4 235 444-682 137-372 (405)
4 2di4_A Zinc protease, cell div 100.0 3.2E-48 1.1E-52 412.0 16.7 197 748-952 1-203 (238)
5 4b4t_I 26S protease regulatory 100.0 5.6E-47 1.9E-51 431.5 22.2 233 446-682 173-406 (437)
6 4b4t_M 26S protease regulatory 100.0 1.2E-46 3.9E-51 432.3 22.6 257 445-709 171-428 (434)
7 4b4t_H 26S protease regulatory 100.0 2.6E-46 8.9E-51 429.6 25.3 231 446-680 200-431 (467)
8 4b4t_L 26S protease subunit RP 100.0 3.6E-46 1.2E-50 428.5 22.6 234 445-682 171-405 (437)
9 4b4t_K 26S protease regulatory 100.0 6.9E-45 2.4E-49 417.2 27.0 232 446-681 163-396 (428)
10 3cf2_A TER ATPase, transitiona 100.0 7.6E-46 2.6E-50 452.0 19.9 303 448-758 197-521 (806)
11 3cf2_A TER ATPase, transitiona 100.0 7.6E-43 2.6E-47 425.6 8.3 232 447-682 469-701 (806)
12 2x8a_A Nuclear valosin-contain 100.0 1.8E-36 6E-41 328.9 19.3 231 448-682 3-236 (274)
13 3cf0_A Transitional endoplasmi 100.0 4E-36 1.4E-40 329.0 21.9 231 448-682 8-239 (301)
14 3hu3_A Transitional endoplasmi 100.0 9.3E-36 3.2E-40 347.7 21.3 272 450-729 199-484 (489)
15 1xwi_A SKD1 protein; VPS4B, AA 100.0 7.6E-35 2.6E-39 322.6 23.8 226 448-682 5-233 (322)
16 1lv7_A FTSH; alpha/beta domain 100.0 4.8E-34 1.6E-38 303.7 24.4 228 448-679 5-232 (257)
17 3eie_A Vacuolar protein sortin 100.0 1.8E-34 6.1E-39 318.6 18.5 226 448-682 11-238 (322)
18 2qp9_X Vacuolar protein sortin 100.0 4.9E-34 1.7E-38 320.1 19.5 230 444-682 40-271 (355)
19 2qz4_A Paraplegin; AAA+, SPG7, 100.0 3.3E-33 1.1E-37 295.8 21.3 231 450-682 1-232 (262)
20 3h4m_A Proteasome-activating n 100.0 1.8E-32 6.2E-37 294.8 26.1 229 448-680 10-239 (285)
21 2zan_A Vacuolar protein sortin 100.0 1.2E-32 4.2E-37 317.7 22.4 229 445-682 124-355 (444)
22 1ixz_A ATP-dependent metallopr 100.0 7E-32 2.4E-36 286.6 24.1 239 448-690 9-249 (254)
23 2r62_A Cell division protease 100.0 7.5E-33 2.6E-37 295.6 7.6 252 448-709 4-259 (268)
24 3b9p_A CG5977-PA, isoform A; A 100.0 1.6E-30 5.4E-35 281.7 23.5 226 448-682 14-243 (297)
25 1iy2_A ATP-dependent metallopr 100.0 2.1E-30 7.2E-35 279.6 24.0 238 449-690 34-273 (278)
26 1ypw_A Transitional endoplasmi 100.0 1.6E-32 5.3E-37 337.9 -0.1 232 448-683 470-702 (806)
27 3d8b_A Fidgetin-like protein 1 100.0 3.9E-30 1.3E-34 288.4 19.2 226 447-681 76-304 (357)
28 1ypw_A Transitional endoplasmi 100.0 3.6E-30 1.2E-34 316.9 18.8 302 449-758 198-521 (806)
29 3vfd_A Spastin; ATPase, microt 100.0 1.9E-29 6.5E-34 285.4 20.8 227 447-682 107-336 (389)
30 3t15_A Ribulose bisphosphate c 100.0 2.1E-29 7.1E-34 275.4 12.6 178 483-671 31-223 (293)
31 2c9o_A RUVB-like 1; hexameric 99.9 1.1E-25 3.9E-30 260.1 0.4 206 448-674 30-262 (456)
32 3syl_A Protein CBBX; photosynt 99.8 1.3E-20 4.6E-25 204.3 18.0 206 456-676 32-259 (309)
33 1d2n_A N-ethylmaleimide-sensit 99.8 7.3E-19 2.5E-23 188.5 19.7 207 454-674 32-244 (272)
34 3uk6_A RUVB-like 2; hexameric 99.8 2.5E-18 8.5E-23 191.0 20.4 201 449-677 38-308 (368)
35 1ofh_A ATP-dependent HSL prote 99.8 1.6E-18 5.5E-23 187.0 17.2 179 455-637 15-213 (310)
36 1g41_A Heat shock protein HSLU 99.8 6.2E-20 2.1E-24 211.4 6.3 171 455-637 15-190 (444)
37 3pfi_A Holliday junction ATP-d 99.8 5.8E-18 2E-22 186.4 20.5 193 448-675 22-230 (338)
38 3hws_A ATP-dependent CLP prote 99.8 1.2E-18 4.1E-23 195.0 13.2 218 456-675 16-318 (363)
39 1hqc_A RUVB; extended AAA-ATPa 99.8 2.2E-17 7.5E-22 180.0 20.2 198 448-679 5-218 (324)
40 3u61_B DNA polymerase accessor 99.7 1.2E-17 4.2E-22 183.0 13.3 180 448-664 19-209 (324)
41 3m6a_A ATP-dependent protease 99.7 1.2E-17 4.1E-22 197.5 13.0 166 454-640 80-267 (543)
42 1jbk_A CLPB protein; beta barr 99.7 3.9E-17 1.3E-21 161.6 12.8 161 451-636 18-195 (195)
43 2chg_A Replication factor C sm 99.7 5.9E-16 2E-20 156.7 19.8 185 448-673 10-205 (226)
44 1sxj_A Activator 1 95 kDa subu 99.7 9.9E-17 3.4E-21 188.3 14.2 225 444-691 28-268 (516)
45 1r6b_X CLPA protein; AAA+, N-t 99.7 5E-16 1.7E-20 189.8 20.2 202 451-676 182-406 (758)
46 1um8_A ATP-dependent CLP prote 99.7 4E-16 1.4E-20 175.1 17.8 180 455-636 21-283 (376)
47 1njg_A DNA polymerase III subu 99.7 1.3E-15 4.4E-20 155.6 17.9 189 448-676 16-232 (250)
48 2v1u_A Cell division control p 99.7 1.6E-15 5.3E-20 167.9 18.8 207 452-678 16-255 (387)
49 3pvs_A Replication-associated 99.7 1.3E-15 4.3E-20 176.3 18.5 190 449-679 20-222 (447)
50 1l8q_A Chromosomal replication 99.7 1.4E-15 4.9E-20 166.9 17.5 195 449-674 5-210 (324)
51 4fcw_A Chaperone protein CLPB; 99.6 8.7E-16 3E-20 166.4 15.1 204 455-677 17-276 (311)
52 2p65_A Hypothetical protein PF 99.6 1E-15 3.4E-20 151.7 12.9 153 451-627 18-187 (187)
53 3pxg_A Negative regulator of g 99.6 5.5E-16 1.9E-20 180.0 12.6 175 449-664 174-365 (468)
54 2qby_B CDC6 homolog 3, cell di 99.6 6.5E-15 2.2E-19 163.7 19.6 211 454-691 19-264 (384)
55 2z4s_A Chromosomal replication 99.6 3.5E-15 1.2E-19 172.1 17.6 204 449-679 99-313 (440)
56 2chq_A Replication factor C sm 99.6 3.5E-15 1.2E-19 161.3 16.6 180 447-662 9-195 (319)
57 3bos_A Putative DNA replicatio 99.6 5.1E-15 1.7E-19 152.8 17.1 201 450-690 23-236 (242)
58 3pxi_A Negative regulator of g 99.6 4.9E-15 1.7E-19 181.3 19.8 185 449-674 174-380 (758)
59 1qvr_A CLPB protein; coiled co 99.6 2.7E-15 9.1E-20 186.1 16.7 202 450-676 165-389 (854)
60 1g8p_A Magnesium-chelatase 38 99.6 5.6E-15 1.9E-19 162.5 16.5 161 448-639 17-232 (350)
61 1iqp_A RFCS; clamp loader, ext 99.6 2.1E-14 7.3E-19 155.6 19.1 183 448-671 18-211 (327)
62 3pxi_A Negative regulator of g 99.6 7.4E-15 2.5E-19 179.7 17.1 192 455-674 491-719 (758)
63 2r44_A Uncharacterized protein 99.6 8.1E-15 2.8E-19 161.2 15.4 157 453-641 25-200 (331)
64 1sxj_B Activator 1 37 kDa subu 99.6 1.7E-14 5.7E-19 156.2 17.0 178 448-665 14-203 (323)
65 1r6b_X CLPA protein; AAA+, N-t 99.6 1E-14 3.5E-19 178.2 17.1 196 455-675 458-711 (758)
66 1sxj_D Activator 1 41 kDa subu 99.6 2.2E-14 7.5E-19 157.7 17.2 176 448-663 30-227 (353)
67 1jr3_A DNA polymerase III subu 99.6 1.2E-13 4.1E-18 153.0 22.2 188 448-675 9-224 (373)
68 2qby_A CDC6 homolog 1, cell di 99.6 5E-14 1.7E-18 155.5 18.4 207 450-678 15-251 (386)
69 1in4_A RUVB, holliday junction 99.5 1.3E-13 4.6E-18 152.8 20.7 194 450-678 20-229 (334)
70 1fnn_A CDC6P, cell division co 99.5 3.6E-13 1.2E-17 149.5 20.7 205 451-679 13-254 (389)
71 1sxj_E Activator 1 40 kDa subu 99.5 2.7E-13 9.2E-18 149.7 18.5 180 446-662 5-228 (354)
72 3te6_A Regulatory protein SIR3 99.5 7.6E-14 2.6E-18 154.7 14.0 141 485-642 42-214 (318)
73 2bjv_A PSP operon transcriptio 99.5 1.2E-13 4E-18 147.3 13.4 161 452-641 3-196 (265)
74 1qvr_A CLPB protein; coiled co 99.5 1.5E-13 5.1E-18 170.5 14.6 197 455-676 558-816 (854)
75 1sxj_C Activator 1 40 kDa subu 99.4 2.7E-12 9.3E-17 142.1 20.2 186 448-677 18-214 (340)
76 3nbx_X ATPase RAVA; AAA+ ATPas 99.4 3E-13 1E-17 158.4 10.0 153 455-639 22-196 (500)
77 1ojl_A Transcriptional regulat 99.4 1E-12 3.5E-17 144.3 12.5 157 455-641 2-192 (304)
78 3f9v_A Minichromosome maintena 99.4 8.3E-14 2.8E-18 166.4 1.8 166 455-642 295-493 (595)
79 3co5_A Putative two-component 99.3 7.4E-13 2.5E-17 129.3 6.3 132 456-626 5-142 (143)
80 3cmw_A Protein RECA, recombina 99.3 7.4E-13 2.5E-17 172.0 6.5 155 449-604 1014-1218(1706)
81 3n70_A Transport activator; si 99.3 3.8E-12 1.3E-16 124.4 9.6 111 456-603 2-115 (145)
82 1w5s_A Origin recognition comp 99.3 6.7E-11 2.3E-15 132.5 19.7 207 451-675 18-269 (412)
83 1a5t_A Delta prime, HOLB; zinc 99.3 5.3E-11 1.8E-15 132.0 18.3 147 486-662 22-196 (334)
84 3k1j_A LON protease, ATP-depen 99.2 8.8E-11 3E-15 140.4 12.8 53 447-513 33-85 (604)
85 2gno_A DNA polymerase III, gam 99.2 1.2E-10 4.2E-15 128.2 12.8 142 459-639 1-152 (305)
86 4akg_A Glutathione S-transfera 99.2 2.8E-10 9.7E-15 153.7 18.6 139 488-642 1267-1434(2695)
87 3ec2_A DNA replication protein 99.0 3.7E-10 1.3E-14 113.3 9.6 103 449-560 4-112 (180)
88 2w58_A DNAI, primosome compone 99.0 1.7E-09 5.7E-14 110.2 10.0 104 450-560 20-127 (202)
89 2fna_A Conserved hypothetical 98.8 5.5E-08 1.9E-12 105.9 16.9 190 449-674 7-252 (357)
90 2qen_A Walker-type ATPase; unk 98.8 2.6E-07 9.1E-12 100.4 20.1 193 450-673 7-247 (350)
91 2kjq_A DNAA-related protein; s 98.7 1.2E-08 4.1E-13 100.7 6.4 58 487-560 35-95 (149)
92 2vhj_A Ntpase P4, P4; non- hyd 98.7 4.7E-09 1.6E-13 116.4 3.7 122 484-611 119-242 (331)
93 1ny5_A Transcriptional regulat 98.7 4.9E-08 1.7E-12 110.7 10.4 122 454-603 136-281 (387)
94 2qgz_A Helicase loader, putati 98.6 4.4E-08 1.5E-12 107.8 8.1 101 451-560 120-226 (308)
95 3kw6_A 26S protease regulatory 98.6 6.6E-08 2.2E-12 85.3 7.5 55 624-681 1-55 (78)
96 2r2a_A Uncharacterized protein 98.6 6.2E-08 2.1E-12 100.5 8.3 128 489-629 6-156 (199)
97 1svm_A Large T antigen; AAA+ f 98.5 5.8E-08 2E-12 110.0 5.9 120 483-625 164-284 (377)
98 2krk_A 26S protease regulatory 98.5 2E-08 6.9E-13 90.8 1.7 58 622-682 7-64 (86)
99 4akg_A Glutathione S-transfera 98.5 8.2E-07 2.8E-11 120.6 17.4 128 488-637 645-791 (2695)
100 3f8t_A Predicted ATPase involv 98.4 9.7E-07 3.3E-11 102.2 13.4 146 457-631 215-386 (506)
101 3vlf_B 26S protease regulatory 98.4 2.2E-07 7.4E-12 84.2 6.1 52 627-681 2-53 (88)
102 3dzd_A Transcriptional regulat 98.4 9.2E-07 3.2E-11 99.7 12.7 157 455-641 129-318 (368)
103 3cmu_A Protein RECA, recombina 98.4 2.7E-07 9.2E-12 121.9 9.2 116 484-600 1423-1560(2050)
104 3aji_B S6C, proteasome (prosom 98.3 3.2E-07 1.1E-11 81.7 4.2 73 626-705 1-73 (83)
105 3cmw_A Protein RECA, recombina 98.2 1.5E-07 5.2E-12 122.9 -0.4 79 484-562 728-824 (1706)
106 3vkg_A Dynein heavy chain, cyt 98.2 4.1E-06 1.4E-10 114.7 12.3 138 488-641 1304-1471(3245)
107 1tue_A Replication protein E1; 98.2 1E-06 3.5E-11 92.0 4.5 33 484-516 54-86 (212)
108 3vkg_A Dynein heavy chain, cyt 98.0 1.5E-05 5.3E-10 109.2 12.5 127 489-637 605-751 (3245)
109 1ye8_A Protein THEP1, hypothet 98.0 3E-05 1E-09 78.6 11.2 28 490-517 2-29 (178)
110 1u0j_A DNA replication protein 97.9 3.3E-05 1.1E-09 83.6 10.0 27 488-514 104-130 (267)
111 1z6t_A APAF-1, apoptotic prote 97.8 0.00065 2.2E-08 80.0 20.1 180 451-673 120-329 (591)
112 1jr3_D DNA polymerase III, del 97.8 9E-05 3.1E-09 81.7 11.7 147 486-662 16-176 (343)
113 2dzn_B 26S protease regulatory 97.8 3E-06 1E-10 75.5 -0.2 52 629-683 1-52 (82)
114 2cvh_A DNA repair and recombin 97.7 3.9E-05 1.3E-09 78.1 7.1 40 484-523 16-55 (220)
115 1n0w_A DNA repair protein RAD5 97.6 5.1E-05 1.7E-09 78.5 6.6 79 484-562 20-133 (243)
116 3hr8_A Protein RECA; alpha and 97.6 9.5E-05 3.3E-09 83.1 8.0 117 484-600 57-194 (356)
117 2c9o_A RUVB-like 1; hexameric 97.6 0.00023 7.7E-09 82.2 11.3 122 549-692 296-432 (456)
118 2w0m_A SSO2452; RECA, SSPF, un 97.5 0.00013 4.4E-09 74.5 7.7 38 484-521 19-59 (235)
119 2zr9_A Protein RECA, recombina 97.5 7.8E-05 2.7E-09 83.5 6.2 79 484-562 57-153 (349)
120 1xp8_A RECA protein, recombina 97.5 0.00018 6.2E-09 81.2 9.1 117 484-600 70-207 (366)
121 3cmu_A Protein RECA, recombina 97.4 0.00017 5.8E-09 95.8 8.9 119 484-602 728-867 (2050)
122 3sfz_A APAF-1, apoptotic pepti 97.4 0.0011 3.8E-08 83.9 15.5 181 449-672 118-328 (1249)
123 1qhx_A CPT, protein (chloramph 97.4 0.00012 4E-09 72.5 5.0 38 488-525 3-40 (178)
124 1u94_A RECA protein, recombina 97.4 0.00022 7.6E-09 80.1 7.4 79 484-562 59-155 (356)
125 2z43_A DNA repair and recombin 97.3 0.00014 4.7E-09 80.2 5.3 116 484-600 103-254 (324)
126 2ehv_A Hypothetical protein PH 97.3 0.00043 1.5E-08 71.7 8.5 38 484-521 26-67 (251)
127 4a74_A DNA repair and recombin 97.3 0.00014 4.8E-09 74.4 4.7 29 484-512 21-49 (231)
128 3upu_A ATP-dependent DNA helic 97.3 0.00075 2.6E-08 77.8 10.6 128 447-603 16-166 (459)
129 1v5w_A DMC1, meiotic recombina 97.2 0.00037 1.3E-08 77.6 7.3 117 484-601 118-271 (343)
130 2orw_A Thymidine kinase; TMTK, 97.2 0.00025 8.4E-09 72.2 5.4 68 490-560 5-88 (184)
131 3trf_A Shikimate kinase, SK; a 97.2 0.00017 5.7E-09 71.9 3.9 33 488-520 5-37 (185)
132 2a5y_B CED-4; apoptosis; HET: 97.2 0.0033 1.1E-07 74.0 15.3 168 458-663 131-329 (549)
133 2rhm_A Putative kinase; P-loop 97.2 0.00019 6.5E-09 71.6 3.7 35 485-519 2-36 (193)
134 3lda_A DNA repair protein RAD5 97.1 0.00042 1.4E-08 79.1 6.7 119 484-603 174-327 (400)
135 3vaa_A Shikimate kinase, SK; s 97.1 0.00023 7.8E-09 72.4 4.1 35 486-520 23-57 (199)
136 3crm_A TRNA delta(2)-isopenten 97.1 0.00052 1.8E-08 76.2 7.1 37 488-524 5-41 (323)
137 1gvn_B Zeta; postsegregational 97.1 0.00058 2E-08 74.2 6.8 60 461-524 10-69 (287)
138 3io5_A Recombination and repai 97.1 0.00078 2.7E-08 74.7 7.8 116 484-600 25-168 (333)
139 1pzn_A RAD51, DNA repair and r 97.1 0.00045 1.5E-08 77.2 5.9 40 484-523 127-175 (349)
140 2p5t_B PEZT; postsegregational 97.0 0.00055 1.9E-08 72.6 5.8 60 461-524 9-68 (253)
141 3kb2_A SPBC2 prophage-derived 97.0 0.00044 1.5E-08 67.4 4.0 31 490-520 3-33 (173)
142 2iyv_A Shikimate kinase, SK; t 96.9 0.00041 1.4E-08 69.1 3.7 31 490-520 4-34 (184)
143 1zuh_A Shikimate kinase; alpha 96.9 0.00043 1.5E-08 68.1 3.7 31 489-519 8-38 (168)
144 3iij_A Coilin-interacting nucl 96.9 0.00045 1.5E-08 68.7 3.8 33 487-519 10-42 (180)
145 1zp6_A Hypothetical protein AT 96.9 0.00042 1.4E-08 69.2 3.6 40 485-524 6-45 (191)
146 1y63_A LMAJ004144AAA protein; 96.9 0.00043 1.5E-08 69.6 3.5 33 487-519 9-42 (184)
147 2i1q_A DNA repair and recombin 96.9 0.00052 1.8E-08 75.2 4.3 29 484-512 94-122 (322)
148 1via_A Shikimate kinase; struc 96.9 0.00044 1.5E-08 68.5 3.3 29 490-518 6-34 (175)
149 2dr3_A UPF0273 protein PH0284; 96.9 0.0047 1.6E-07 63.7 11.1 39 484-522 19-60 (247)
150 2r8r_A Sensor protein; KDPD, P 96.9 0.0043 1.5E-07 65.6 10.8 33 489-521 7-42 (228)
151 2cdn_A Adenylate kinase; phosp 96.9 0.00061 2.1E-08 69.1 4.2 34 486-519 18-51 (201)
152 2iut_A DNA translocase FTSK; n 96.9 0.0038 1.3E-07 74.2 11.4 74 550-636 345-420 (574)
153 1tev_A UMP-CMP kinase; ploop, 96.8 0.00052 1.8E-08 68.2 3.4 35 488-524 3-37 (196)
154 1kag_A SKI, shikimate kinase I 96.8 0.00071 2.4E-08 66.5 4.3 35 488-524 4-38 (173)
155 1qf9_A UMP/CMP kinase, protein 96.8 0.00059 2E-08 67.7 3.4 34 486-519 4-37 (194)
156 1nlf_A Regulatory protein REPA 96.8 0.0017 5.7E-08 69.6 7.1 29 484-512 26-54 (279)
157 1g41_A Heat shock protein HSLU 96.8 0.007 2.4E-07 69.9 12.6 95 536-636 240-346 (444)
158 3t61_A Gluconokinase; PSI-biol 96.8 0.00088 3E-08 67.9 4.4 31 488-518 18-48 (202)
159 3lw7_A Adenylate kinase relate 96.7 0.00064 2.2E-08 65.8 3.1 29 490-519 3-31 (179)
160 2c95_A Adenylate kinase 1; tra 96.7 0.00066 2.3E-08 67.8 3.3 34 487-520 8-41 (196)
161 3dm5_A SRP54, signal recogniti 96.7 0.0067 2.3E-07 70.0 11.8 72 487-558 99-192 (443)
162 1ly1_A Polynucleotide kinase; 96.7 0.0005 1.7E-08 67.6 2.1 30 488-517 2-32 (181)
163 2b8t_A Thymidine kinase; deoxy 96.7 0.0033 1.1E-07 66.2 8.2 70 490-560 14-101 (223)
164 2ze6_A Isopentenyl transferase 96.7 0.00093 3.2E-08 71.1 4.1 33 490-522 3-35 (253)
165 1aky_A Adenylate kinase; ATP:A 96.7 0.00086 2.9E-08 69.0 3.7 32 488-519 4-35 (220)
166 2pez_A Bifunctional 3'-phospho 96.7 0.0013 4.4E-08 65.4 4.8 38 487-524 4-44 (179)
167 1e6c_A Shikimate kinase; phosp 96.7 0.00077 2.6E-08 66.1 3.1 29 490-518 4-32 (173)
168 2zts_A Putative uncharacterize 96.6 0.0015 5.3E-08 67.4 5.5 38 484-521 26-67 (251)
169 2vli_A Antibiotic resistance p 96.6 0.00086 2.9E-08 66.4 3.4 30 488-517 5-34 (183)
170 1zd8_A GTP:AMP phosphotransfer 96.6 0.00074 2.5E-08 69.9 3.0 34 486-519 5-38 (227)
171 3cm0_A Adenylate kinase; ATP-b 96.6 0.00066 2.3E-08 67.5 2.5 31 488-518 4-34 (186)
172 1kht_A Adenylate kinase; phosp 96.6 0.00081 2.8E-08 66.7 2.9 25 489-513 4-28 (192)
173 2bwj_A Adenylate kinase 5; pho 96.6 0.00084 2.9E-08 67.2 3.0 32 488-519 12-43 (199)
174 3dl0_A Adenylate kinase; phosp 96.6 0.00098 3.4E-08 68.2 3.5 30 490-519 2-31 (216)
175 3fb4_A Adenylate kinase; psych 96.6 0.001 3.5E-08 67.9 3.5 29 491-519 3-31 (216)
176 2pt5_A Shikimate kinase, SK; a 96.6 0.0011 3.8E-08 64.8 3.5 30 490-519 2-31 (168)
177 1ukz_A Uridylate kinase; trans 96.6 0.0011 3.7E-08 67.1 3.6 34 487-520 14-47 (203)
178 3e1s_A Exodeoxyribonuclease V, 96.5 0.0027 9.3E-08 75.6 7.3 98 489-603 205-317 (574)
179 3jvv_A Twitching mobility prot 96.5 0.0013 4.5E-08 73.8 4.4 69 489-557 124-205 (356)
180 2ius_A DNA translocase FTSK; n 96.5 0.0061 2.1E-07 71.6 10.0 75 549-636 297-374 (512)
181 3tlx_A Adenylate kinase 2; str 96.5 0.0012 4E-08 69.8 3.6 34 486-519 27-60 (243)
182 2i3b_A HCR-ntpase, human cance 96.5 0.0045 1.5E-07 63.3 7.8 23 490-512 3-25 (189)
183 2eyu_A Twitching motility prot 96.5 0.0017 6E-08 69.6 4.9 72 486-557 23-107 (261)
184 1ak2_A Adenylate kinase isoenz 96.5 0.0013 4.5E-08 68.5 3.8 32 488-519 16-47 (233)
185 4gp7_A Metallophosphoesterase; 96.5 0.001 3.6E-08 66.2 2.9 22 486-507 7-28 (171)
186 3umf_A Adenylate kinase; rossm 96.5 0.0012 4.2E-08 69.2 3.5 39 485-525 26-64 (217)
187 1knq_A Gluconate kinase; ALFA/ 96.5 0.0016 5.5E-08 64.2 4.0 35 488-524 8-42 (175)
188 3be4_A Adenylate kinase; malar 96.5 0.001 3.5E-08 68.5 2.6 31 489-519 6-36 (217)
189 1zak_A Adenylate kinase; ATP:A 96.4 0.00086 2.9E-08 69.1 2.0 37 487-525 4-40 (222)
190 1vma_A Cell division protein F 96.4 0.014 4.9E-07 64.1 11.7 36 486-521 102-140 (306)
191 2px0_A Flagellar biosynthesis 96.4 0.02 6.9E-07 62.5 12.8 59 461-521 79-142 (296)
192 2r6a_A DNAB helicase, replicat 96.4 0.0047 1.6E-07 71.2 8.1 38 484-521 199-240 (454)
193 3kl4_A SRP54, signal recogniti 96.4 0.011 3.9E-07 68.0 11.1 73 487-559 96-190 (433)
194 4eun_A Thermoresistant glucoki 96.4 0.0021 7.2E-08 65.3 4.3 36 487-524 28-63 (200)
195 3foz_A TRNA delta(2)-isopenten 96.4 0.0068 2.3E-07 67.0 8.5 39 487-525 9-47 (316)
196 3bh0_A DNAB-like replicative h 96.3 0.0067 2.3E-07 66.6 8.5 38 484-521 64-104 (315)
197 3uie_A Adenylyl-sulfate kinase 96.3 0.0027 9.4E-08 64.4 4.9 39 486-524 23-64 (200)
198 2q6t_A DNAB replication FORK h 96.3 0.0053 1.8E-07 70.5 7.7 38 484-521 196-237 (444)
199 3a4m_A L-seryl-tRNA(SEC) kinas 96.3 0.0028 9.5E-08 67.5 4.9 37 488-524 4-43 (260)
200 2pbr_A DTMP kinase, thymidylat 96.3 0.0026 9E-08 63.1 4.4 30 491-520 3-35 (195)
201 1nks_A Adenylate kinase; therm 96.3 0.0019 6.7E-08 63.9 3.3 35 490-524 3-40 (194)
202 1e4v_A Adenylate kinase; trans 96.2 0.0019 6.3E-08 66.3 3.0 30 490-519 2-31 (214)
203 1cke_A CK, MSSA, protein (cyti 96.2 0.003 1E-07 64.7 4.4 30 489-518 6-35 (227)
204 2ewv_A Twitching motility prot 96.2 0.0047 1.6E-07 69.6 6.2 76 482-557 130-218 (372)
205 2v54_A DTMP kinase, thymidylat 96.2 0.0029 9.9E-08 63.7 4.0 33 488-520 4-37 (204)
206 1s96_A Guanylate kinase, GMP k 96.1 0.017 5.9E-07 60.2 9.9 28 486-513 14-41 (219)
207 3sr0_A Adenylate kinase; phosp 96.1 0.0029 9.8E-08 65.7 3.7 33 491-525 3-35 (206)
208 2bbw_A Adenylate kinase 4, AK4 96.1 0.0035 1.2E-07 65.8 4.3 31 488-518 27-57 (246)
209 2if2_A Dephospho-COA kinase; a 96.1 0.0022 7.5E-08 64.8 2.6 30 490-520 3-32 (204)
210 2jaq_A Deoxyguanosine kinase; 96.1 0.003 1E-07 63.2 3.6 29 490-518 2-30 (205)
211 2z0h_A DTMP kinase, thymidylat 96.0 0.004 1.4E-07 62.2 4.3 30 491-520 3-35 (197)
212 2xb4_A Adenylate kinase; ATP-b 96.0 0.0028 9.5E-08 65.7 3.2 33 491-525 3-35 (223)
213 1ex7_A Guanylate kinase; subst 96.0 0.011 3.8E-07 60.4 7.5 27 490-516 3-29 (186)
214 1uf9_A TT1252 protein; P-loop, 96.0 0.0031 1.1E-07 63.2 3.3 34 488-524 8-41 (203)
215 3ake_A Cytidylate kinase; CMP 96.0 0.004 1.4E-07 62.7 4.0 31 490-520 4-34 (208)
216 2fz4_A DNA repair protein RAD2 95.9 0.016 5.6E-07 60.8 8.6 33 490-522 110-142 (237)
217 1jjv_A Dephospho-COA kinase; P 95.9 0.0035 1.2E-07 63.5 3.2 32 490-524 4-35 (206)
218 2plr_A DTMP kinase, probable t 95.9 0.0059 2E-07 61.4 4.7 28 488-515 4-31 (213)
219 1uj2_A Uridine-cytidine kinase 95.8 0.006 2.1E-07 64.3 4.8 40 486-525 20-67 (252)
220 3r20_A Cytidylate kinase; stru 95.7 0.0056 1.9E-07 64.9 4.1 32 487-518 8-39 (233)
221 2grj_A Dephospho-COA kinase; T 95.7 0.0044 1.5E-07 63.5 3.1 34 489-524 13-46 (192)
222 2wwf_A Thymidilate kinase, put 95.7 0.0024 8.2E-08 64.6 1.1 31 487-517 9-39 (212)
223 3tau_A Guanylate kinase, GMP k 95.7 0.0093 3.2E-07 61.1 5.5 27 487-513 7-33 (208)
224 2ga8_A Hypothetical 39.9 kDa p 95.7 0.0039 1.3E-07 70.1 2.7 30 489-518 25-54 (359)
225 1vt4_I APAF-1 related killer D 95.7 0.021 7.3E-07 72.1 9.5 44 457-511 130-173 (1221)
226 2yvu_A Probable adenylyl-sulfa 95.7 0.0093 3.2E-07 59.5 5.2 39 486-524 11-52 (186)
227 1g5t_A COB(I)alamin adenosyltr 95.7 0.029 9.9E-07 58.0 8.9 69 490-559 30-131 (196)
228 1nn5_A Similar to deoxythymidy 95.6 0.0028 9.7E-08 64.1 1.3 28 487-514 8-35 (215)
229 3nwj_A ATSK2; P loop, shikimat 95.6 0.0055 1.9E-07 65.5 3.5 33 488-520 48-80 (250)
230 2pt7_A CAG-ALFA; ATPase, prote 95.6 0.0078 2.7E-07 66.7 4.9 70 489-558 172-250 (330)
231 1vht_A Dephospho-COA kinase; s 95.6 0.006 2E-07 62.5 3.7 31 488-519 4-34 (218)
232 2h92_A Cytidylate kinase; ross 95.6 0.0061 2.1E-07 62.3 3.5 32 488-519 3-34 (219)
233 1m7g_A Adenylylsulfate kinase; 95.6 0.0074 2.5E-07 61.7 4.1 40 485-524 22-65 (211)
234 3a8t_A Adenylate isopentenyltr 95.6 0.0051 1.8E-07 68.7 3.1 38 488-525 40-77 (339)
235 1ltq_A Polynucleotide kinase; 95.5 0.0046 1.6E-07 66.5 2.5 30 488-517 2-32 (301)
236 2qor_A Guanylate kinase; phosp 95.5 0.0095 3.2E-07 60.6 4.7 29 485-513 9-37 (204)
237 3bgw_A DNAB-like replicative h 95.4 0.024 8.2E-07 65.4 8.2 38 484-521 193-233 (444)
238 2qt1_A Nicotinamide riboside k 95.4 0.0052 1.8E-07 62.4 2.3 32 487-518 20-52 (207)
239 3c8u_A Fructokinase; YP_612366 95.4 0.012 4.2E-07 60.0 5.0 28 486-513 20-47 (208)
240 1q3t_A Cytidylate kinase; nucl 95.4 0.01 3.5E-07 61.9 4.4 33 486-518 14-46 (236)
241 3e70_C DPA, signal recognition 95.4 0.058 2E-06 59.8 10.6 27 486-512 127-153 (328)
242 2j41_A Guanylate kinase; GMP, 95.3 0.0092 3.2E-07 59.9 3.6 27 486-512 4-30 (207)
243 4e22_A Cytidylate kinase; P-lo 95.3 0.011 3.9E-07 62.5 4.4 29 489-517 28-56 (252)
244 2f6r_A COA synthase, bifunctio 95.2 0.0077 2.6E-07 65.0 3.0 34 488-524 75-108 (281)
245 3gmt_A Adenylate kinase; ssgci 95.2 0.034 1.2E-06 58.8 7.8 33 491-525 11-43 (230)
246 1kgd_A CASK, peripheral plasma 95.2 0.011 3.7E-07 59.2 3.8 26 488-513 5-30 (180)
247 2ged_A SR-beta, signal recogni 95.2 0.03 1E-06 55.3 7.0 47 460-512 26-72 (193)
248 3ney_A 55 kDa erythrocyte memb 95.2 0.018 6.3E-07 59.4 5.6 27 487-513 18-44 (197)
249 1x6v_B Bifunctional 3'-phospho 95.2 0.029 9.8E-07 67.5 7.9 38 487-524 51-91 (630)
250 3exa_A TRNA delta(2)-isopenten 95.2 0.012 4.1E-07 65.2 4.3 37 489-525 4-40 (322)
251 1q57_A DNA primase/helicase; d 95.1 0.028 9.7E-07 65.4 7.5 38 484-521 238-279 (503)
252 1w36_D RECD, exodeoxyribonucle 95.0 0.06 2E-06 64.4 10.0 24 489-512 165-188 (608)
253 3zvl_A Bifunctional polynucleo 94.9 0.0078 2.7E-07 68.7 2.0 32 486-517 256-287 (416)
254 2bdt_A BH3686; alpha-beta prot 94.9 0.015 5.1E-07 58.1 3.7 34 490-524 4-37 (189)
255 2xau_A PRE-mRNA-splicing facto 94.8 0.06 2.1E-06 66.3 9.6 57 451-511 71-132 (773)
256 1hv8_A Putative ATP-dependent 94.8 0.093 3.2E-06 56.7 10.2 69 451-521 5-82 (367)
257 3d3q_A TRNA delta(2)-isopenten 94.8 0.014 4.8E-07 65.2 3.6 34 489-522 8-41 (340)
258 1ls1_A Signal recognition part 94.8 0.12 4E-06 56.3 10.7 35 487-521 97-134 (295)
259 1t6n_A Probable ATP-dependent 94.7 0.17 5.9E-06 51.3 11.4 60 451-512 13-75 (220)
260 3tr0_A Guanylate kinase, GMP k 94.7 0.017 6E-07 57.9 3.8 33 488-522 7-39 (205)
261 3asz_A Uridine kinase; cytidin 94.7 0.012 4.1E-07 59.7 2.7 27 487-513 5-31 (211)
262 2gxq_A Heat resistant RNA depe 94.7 0.097 3.3E-06 52.4 9.3 57 453-511 2-62 (207)
263 2v3c_C SRP54, signal recogniti 94.7 0.074 2.5E-06 61.2 9.4 36 487-522 98-136 (432)
264 2oap_1 GSPE-2, type II secreti 94.7 0.019 6.6E-07 67.4 4.6 71 487-557 259-342 (511)
265 4a1f_A DNAB helicase, replicat 94.7 0.068 2.3E-06 59.6 8.7 38 484-521 42-82 (338)
266 1p9r_A General secretion pathw 94.6 0.098 3.3E-06 59.9 10.2 95 451-558 143-246 (418)
267 2j37_W Signal recognition part 94.6 0.093 3.2E-06 61.5 10.2 36 486-521 99-137 (504)
268 3b6e_A Interferon-induced heli 94.6 0.066 2.3E-06 53.7 7.8 24 489-512 49-72 (216)
269 2axn_A 6-phosphofructo-2-kinas 94.6 0.057 1.9E-06 63.5 8.2 39 487-525 34-75 (520)
270 1tf7_A KAIC; homohexamer, hexa 94.5 0.052 1.8E-06 63.6 7.7 115 484-607 35-188 (525)
271 1rz3_A Hypothetical protein rb 94.5 0.029 1E-06 56.9 4.9 38 486-523 20-60 (201)
272 3fdi_A Uncharacterized protein 94.5 0.019 6.5E-07 59.0 3.4 29 490-518 8-36 (201)
273 2qmh_A HPR kinase/phosphorylas 94.5 0.017 5.7E-07 60.1 2.9 36 488-524 34-69 (205)
274 3a00_A Guanylate kinase, GMP k 94.4 0.019 6.5E-07 57.6 3.2 25 489-513 2-26 (186)
275 1nrj_B SR-beta, signal recogni 94.3 0.095 3.2E-06 52.9 8.2 25 488-512 12-36 (218)
276 3llm_A ATP-dependent RNA helic 94.3 0.15 5E-06 53.0 9.8 22 489-510 77-98 (235)
277 2yhs_A FTSY, cell division pro 94.3 0.28 9.5E-06 57.5 13.0 28 485-512 290-317 (503)
278 3eph_A TRNA isopentenyltransfe 94.1 0.022 7.6E-07 65.0 3.2 37 488-524 2-38 (409)
279 1cr0_A DNA primase/helicase; R 94.1 0.035 1.2E-06 59.6 4.6 39 483-521 30-72 (296)
280 1lvg_A Guanylate kinase, GMP k 94.0 0.025 8.4E-07 57.6 3.1 26 488-513 4-29 (198)
281 3thx_B DNA mismatch repair pro 94.0 0.084 2.9E-06 66.1 8.3 24 487-510 672-695 (918)
282 1q0u_A Bstdead; DEAD protein, 93.9 0.065 2.2E-06 54.6 6.1 54 452-507 4-60 (219)
283 3iuy_A Probable ATP-dependent 93.9 0.16 5.6E-06 51.9 9.1 57 448-506 15-75 (228)
284 3thx_A DNA mismatch repair pro 93.9 0.1 3.5E-06 65.5 8.9 22 489-510 663-684 (934)
285 1tf7_A KAIC; homohexamer, hexa 93.9 0.095 3.2E-06 61.4 8.2 77 484-560 277-383 (525)
286 1qde_A EIF4A, translation init 93.9 0.16 5.6E-06 51.5 9.0 60 449-510 11-74 (224)
287 1z6g_A Guanylate kinase; struc 93.8 0.031 1.1E-06 57.8 3.4 27 486-512 21-47 (218)
288 1htw_A HI0065; nucleotide-bind 93.8 0.037 1.3E-06 54.9 3.8 28 485-512 30-57 (158)
289 2jeo_A Uridine-cytidine kinase 93.8 0.032 1.1E-06 58.4 3.5 30 486-515 23-52 (245)
290 1j8m_F SRP54, signal recogniti 93.7 0.083 2.8E-06 57.7 6.8 35 488-522 98-135 (297)
291 1zu4_A FTSY; GTPase, signal re 93.7 0.3 1E-05 53.8 11.3 37 485-521 102-141 (320)
292 1odf_A YGR205W, hypothetical 3 93.7 0.05 1.7E-06 59.2 4.9 29 485-513 28-56 (290)
293 1xx6_A Thymidine kinase; NESG, 93.7 0.063 2.2E-06 55.0 5.4 70 489-560 9-93 (191)
294 1a7j_A Phosphoribulokinase; tr 93.6 0.031 1.1E-06 60.7 3.2 37 489-525 6-45 (290)
295 3lnc_A Guanylate kinase, GMP k 93.6 0.026 8.7E-07 58.4 2.4 26 487-512 26-52 (231)
296 1znw_A Guanylate kinase, GMP k 93.5 0.039 1.3E-06 56.2 3.6 28 486-513 18-45 (207)
297 3b9q_A Chloroplast SRP recepto 93.4 0.058 2E-06 59.0 5.0 52 461-512 70-124 (302)
298 2xxa_A Signal recognition part 93.4 0.3 1E-05 56.1 11.1 37 486-522 98-138 (433)
299 1wb9_A DNA mismatch repair pro 93.3 0.21 7.1E-06 61.8 10.1 24 488-511 607-630 (800)
300 3pey_A ATP-dependent RNA helic 93.3 0.36 1.2E-05 52.6 11.0 56 452-509 5-65 (395)
301 2v9p_A Replication protein E1; 93.2 0.048 1.6E-06 60.0 3.9 30 483-512 121-150 (305)
302 1m8p_A Sulfate adenylyltransfe 93.1 0.05 1.7E-06 64.7 4.1 38 487-524 395-436 (573)
303 4eaq_A DTMP kinase, thymidylat 93.1 0.053 1.8E-06 56.7 3.8 33 487-519 25-59 (229)
304 4b3f_X DNA-binding protein smu 93.0 0.33 1.1E-05 58.2 11.1 32 491-522 208-242 (646)
305 3hdt_A Putative kinase; struct 93.0 0.044 1.5E-06 57.5 3.0 30 489-518 15-44 (223)
306 3bor_A Human initiation factor 93.0 0.1 3.4E-06 54.2 5.7 56 449-506 27-85 (237)
307 1c9k_A COBU, adenosylcobinamid 93.0 0.042 1.4E-06 56.0 2.7 32 491-523 2-33 (180)
308 3fe2_A Probable ATP-dependent 93.0 0.19 6.4E-06 52.2 7.8 57 448-506 25-84 (242)
309 1gtv_A TMK, thymidylate kinase 92.9 0.017 5.8E-07 58.4 -0.2 23 491-513 3-25 (214)
310 1vec_A ATP-dependent RNA helic 92.9 0.078 2.7E-06 53.1 4.6 52 453-506 4-58 (206)
311 3eiq_A Eukaryotic initiation f 92.8 0.33 1.1E-05 53.5 10.0 55 451-507 39-96 (414)
312 2og2_A Putative signal recogni 92.8 0.078 2.7E-06 59.6 4.9 52 461-512 127-181 (359)
313 3p32_A Probable GTPase RV1496/ 92.7 0.16 5.5E-06 56.5 7.2 34 488-521 79-115 (355)
314 1sq5_A Pantothenate kinase; P- 92.7 0.055 1.9E-06 59.0 3.3 28 486-513 78-105 (308)
315 1ewq_A DNA mismatch repair pro 92.7 0.2 6.9E-06 61.6 8.6 24 488-511 576-599 (765)
316 2gza_A Type IV secretion syste 92.6 0.1 3.5E-06 58.4 5.5 73 486-558 173-262 (361)
317 2pl3_A Probable ATP-dependent 92.5 0.18 6.3E-06 51.8 6.9 54 451-506 24-80 (236)
318 2o8b_B DNA mismatch repair pro 92.4 0.25 8.7E-06 62.6 9.2 22 488-509 789-810 (1022)
319 3tqc_A Pantothenate kinase; bi 92.3 0.071 2.4E-06 59.0 3.7 28 486-513 90-117 (321)
320 1s2m_A Putative ATP-dependent 92.2 0.46 1.6E-05 52.3 10.1 58 450-509 19-79 (400)
321 2oxc_A Probable ATP-dependent 92.1 0.71 2.4E-05 47.3 10.8 55 449-505 21-78 (230)
322 3aez_A Pantothenate kinase; tr 92.0 0.083 2.8E-06 58.1 3.8 28 486-513 88-115 (312)
323 2ocp_A DGK, deoxyguanosine kin 92.0 0.077 2.6E-06 55.3 3.4 26 488-513 2-27 (241)
324 2zj8_A DNA helicase, putative 92.0 0.45 1.5E-05 57.6 10.6 20 487-506 38-57 (720)
325 1w4r_A Thymidine kinase; type 92.0 0.13 4.5E-06 53.1 5.0 34 489-522 21-57 (195)
326 2ffh_A Protein (FFH); SRP54, s 91.9 0.97 3.3E-05 51.9 12.6 35 487-521 97-134 (425)
327 1zd9_A ADP-ribosylation factor 91.9 0.41 1.4E-05 47.1 8.3 23 489-511 23-45 (188)
328 1p5z_B DCK, deoxycytidine kina 91.8 0.04 1.4E-06 58.3 0.8 31 487-517 23-54 (263)
329 3pqc_A Probable GTP-binding pr 91.7 0.54 1.9E-05 45.8 8.9 23 489-511 24-46 (195)
330 1g8f_A Sulfate adenylyltransfe 91.6 0.11 3.9E-06 60.9 4.6 27 488-514 395-421 (511)
331 3dz8_A RAS-related protein RAB 91.6 0.26 8.9E-06 48.6 6.5 23 490-512 25-47 (191)
332 1xti_A Probable ATP-dependent 91.6 0.66 2.3E-05 50.7 10.4 58 452-511 8-68 (391)
333 1rj9_A FTSY, signal recognitio 91.6 0.094 3.2E-06 57.5 3.5 26 487-512 101-126 (304)
334 4i1u_A Dephospho-COA kinase; s 91.5 0.096 3.3E-06 54.6 3.3 31 489-520 10-40 (210)
335 1np6_A Molybdopterin-guanine d 91.4 0.11 3.8E-06 52.4 3.6 25 488-512 6-30 (174)
336 3def_A T7I23.11 protein; chlor 91.4 0.5 1.7E-05 49.9 8.9 25 488-512 36-60 (262)
337 3kta_A Chromosome segregation 91.3 0.097 3.3E-06 51.6 3.1 24 490-513 28-51 (182)
338 1sky_E F1-ATPase, F1-ATP synth 91.3 0.082 2.8E-06 61.4 2.9 24 489-512 152-175 (473)
339 3tif_A Uncharacterized ABC tra 91.3 0.065 2.2E-06 56.3 1.8 28 486-513 29-56 (235)
340 1bif_A 6-phosphofructo-2-kinas 91.3 0.058 2E-06 62.3 1.5 28 487-514 38-65 (469)
341 2cbz_A Multidrug resistance-as 91.2 0.066 2.3E-06 56.4 1.8 28 485-512 28-55 (237)
342 1r8s_A ADP-ribosylation factor 91.2 0.97 3.3E-05 42.7 9.9 23 490-512 2-24 (164)
343 3b85_A Phosphate starvation-in 91.2 0.085 2.9E-06 54.6 2.5 23 489-511 23-45 (208)
344 2j0s_A ATP-dependent RNA helic 91.1 0.51 1.7E-05 52.2 9.0 57 451-509 36-95 (410)
345 3ber_A Probable ATP-dependent 91.1 0.46 1.6E-05 49.8 8.2 53 452-506 43-98 (249)
346 3tqf_A HPR(Ser) kinase; transf 91.1 0.11 3.7E-06 53.0 3.1 28 488-516 16-43 (181)
347 2va8_A SSO2462, SKI2-type heli 91.0 0.61 2.1E-05 56.3 10.3 57 450-508 6-66 (715)
348 1fuu_A Yeast initiation factor 91.0 0.43 1.5E-05 52.1 8.1 56 449-506 18-76 (394)
349 2onk_A Molybdate/tungstate ABC 90.9 0.084 2.9E-06 55.8 2.3 27 485-512 22-48 (240)
350 3sqw_A ATP-dependent RNA helic 90.8 0.34 1.2E-05 57.1 7.5 19 487-505 59-77 (579)
351 1gm5_A RECG; helicase, replica 90.8 0.9 3.1E-05 56.0 11.5 37 486-522 387-426 (780)
352 3cr8_A Sulfate adenylyltranfer 90.7 0.072 2.5E-06 63.2 1.6 38 487-524 368-409 (552)
353 3fmo_B ATP-dependent RNA helic 90.7 1.1 3.8E-05 48.4 10.9 53 451-505 91-148 (300)
354 2qm8_A GTPase/ATPase; G protei 90.7 0.39 1.3E-05 53.1 7.4 27 486-512 53-79 (337)
355 2pcj_A ABC transporter, lipopr 90.6 0.062 2.1E-06 56.0 0.9 26 487-512 29-54 (224)
356 1b0u_A Histidine permease; ABC 90.6 0.083 2.8E-06 56.5 1.9 28 486-513 30-57 (262)
357 1mv5_A LMRA, multidrug resista 90.6 0.081 2.8E-06 55.8 1.7 28 485-512 25-52 (243)
358 4edh_A DTMP kinase, thymidylat 90.5 0.18 6.3E-06 52.2 4.3 32 488-519 6-40 (213)
359 3i5x_A ATP-dependent RNA helic 90.5 0.38 1.3E-05 56.0 7.5 18 487-504 110-127 (563)
360 1xjc_A MOBB protein homolog; s 90.4 0.15 5.1E-06 51.4 3.4 32 489-520 5-39 (169)
361 2f9l_A RAB11B, member RAS onco 90.3 0.13 4.3E-06 51.5 2.8 23 490-512 7-29 (199)
362 2zu0_C Probable ATP-dependent 90.3 0.11 3.7E-06 55.8 2.4 27 485-511 43-69 (267)
363 2ghi_A Transport protein; mult 90.2 0.093 3.2E-06 56.1 1.8 28 485-512 43-70 (260)
364 1z2a_A RAS-related protein RAB 90.2 0.13 4.5E-06 48.9 2.7 23 489-511 6-28 (168)
365 3lxx_A GTPase IMAP family memb 90.2 0.49 1.7E-05 48.9 7.3 24 489-512 30-53 (239)
366 4b4t_J 26S protease regulatory 90.1 0.057 2E-06 61.6 0.1 46 713-758 139-192 (405)
367 2ixe_A Antigen peptide transpo 90.1 0.096 3.3E-06 56.4 1.8 29 485-513 42-70 (271)
368 3oiy_A Reverse gyrase helicase 90.1 0.39 1.3E-05 53.6 6.9 22 489-510 37-58 (414)
369 1g6h_A High-affinity branched- 90.0 0.085 2.9E-06 56.2 1.3 26 488-513 33-58 (257)
370 2olj_A Amino acid ABC transpor 90.0 0.1 3.4E-06 56.1 1.9 28 485-512 47-74 (263)
371 2pze_A Cystic fibrosis transme 90.0 0.087 3E-06 55.1 1.4 27 486-512 32-58 (229)
372 2d2e_A SUFC protein; ABC-ATPas 90.0 0.1 3.4E-06 55.4 1.8 25 487-511 28-52 (250)
373 3vkw_A Replicase large subunit 90.0 0.3 1E-05 56.4 5.8 24 488-511 161-184 (446)
374 3v9p_A DTMP kinase, thymidylat 89.9 0.23 8E-06 52.2 4.6 25 488-512 25-49 (227)
375 2gks_A Bifunctional SAT/APS ki 89.9 0.2 6.8E-06 59.3 4.5 37 488-524 372-411 (546)
376 3ly5_A ATP-dependent RNA helic 89.9 0.51 1.7E-05 49.8 7.2 18 489-506 92-109 (262)
377 2dyk_A GTP-binding protein; GT 89.9 0.15 5.3E-06 48.1 2.9 23 490-512 3-25 (161)
378 1sgw_A Putative ABC transporte 89.9 0.088 3E-06 54.8 1.2 27 487-513 34-60 (214)
379 1ji0_A ABC transporter; ATP bi 89.9 0.09 3.1E-06 55.4 1.3 26 487-512 31-56 (240)
380 1oix_A RAS-related protein RAB 89.8 0.13 4.4E-06 51.4 2.4 23 490-512 31-53 (191)
381 2ff7_A Alpha-hemolysin translo 89.8 0.09 3.1E-06 55.8 1.3 28 486-513 33-60 (247)
382 1fzq_A ADP-ribosylation factor 89.8 0.69 2.3E-05 45.4 7.7 24 488-511 16-39 (181)
383 3fvq_A Fe(3+) IONS import ATP- 89.8 0.1 3.6E-06 58.6 1.8 26 487-512 29-54 (359)
384 2p6r_A Afuhel308 helicase; pro 89.8 0.43 1.5E-05 57.6 7.4 34 488-521 40-76 (702)
385 2yz2_A Putative ABC transporte 89.7 0.11 3.7E-06 55.7 1.8 27 486-512 31-57 (266)
386 1vpl_A ABC transporter, ATP-bi 89.7 0.11 3.7E-06 55.5 1.9 28 486-513 39-66 (256)
387 3lxw_A GTPase IMAP family memb 89.7 2.2 7.6E-05 44.6 12.0 25 488-512 21-45 (247)
388 2j9r_A Thymidine kinase; TK1, 89.7 0.36 1.2E-05 50.5 5.7 30 491-520 31-63 (214)
389 2it1_A 362AA long hypothetical 89.6 0.13 4.3E-06 57.9 2.4 26 487-512 28-53 (362)
390 2fwr_A DNA repair protein RAD2 89.6 0.68 2.3E-05 52.7 8.5 33 490-522 110-142 (472)
391 3gfo_A Cobalt import ATP-bindi 89.6 0.096 3.3E-06 56.6 1.4 27 487-513 33-59 (275)
392 2yyz_A Sugar ABC transporter, 89.6 0.13 4.3E-06 57.9 2.4 27 486-512 27-53 (359)
393 3fht_A ATP-dependent RNA helic 89.6 1.3 4.3E-05 48.7 10.4 53 451-505 24-81 (412)
394 3rlf_A Maltose/maltodextrin im 89.5 0.13 4.5E-06 58.3 2.4 27 486-512 27-53 (381)
395 1v43_A Sugar-binding transport 89.5 0.13 4.5E-06 58.0 2.4 27 486-512 35-61 (372)
396 2qi9_C Vitamin B12 import ATP- 89.5 0.1 3.5E-06 55.5 1.4 28 486-513 24-51 (249)
397 3sop_A Neuronal-specific septi 89.5 0.14 4.7E-06 55.1 2.4 23 490-512 4-26 (270)
398 1lw7_A Transcriptional regulat 89.5 0.14 4.7E-06 57.0 2.5 28 488-515 170-197 (365)
399 3fmp_B ATP-dependent RNA helic 89.3 1.2 4.2E-05 50.6 10.4 52 452-505 92-148 (479)
400 1kao_A RAP2A; GTP-binding prot 89.3 0.18 6.3E-06 47.6 2.9 24 489-512 4-27 (167)
401 1u8z_A RAS-related protein RAL 89.2 0.17 5.9E-06 47.8 2.7 24 489-512 5-28 (168)
402 2orv_A Thymidine kinase; TP4A 89.2 1.1 3.6E-05 47.6 8.9 69 489-560 20-102 (234)
403 4g1u_C Hemin import ATP-bindin 89.2 0.1 3.6E-06 56.0 1.3 27 486-512 35-61 (266)
404 1z47_A CYSA, putative ABC-tran 89.2 0.12 4.2E-06 57.9 1.8 26 487-512 40-65 (355)
405 4a2p_A RIG-I, retinoic acid in 89.2 1.1 3.8E-05 51.4 9.9 33 489-521 23-63 (556)
406 2ihy_A ABC transporter, ATP-bi 89.2 0.11 3.7E-06 56.2 1.4 28 486-513 45-72 (279)
407 2fh5_B SR-beta, signal recogni 89.1 0.7 2.4E-05 46.3 7.3 24 489-512 8-31 (214)
408 2nq2_C Hypothetical ABC transp 89.1 0.11 3.7E-06 55.3 1.3 27 486-512 29-55 (253)
409 3tmk_A Thymidylate kinase; pho 89.1 0.29 9.9E-06 51.0 4.5 29 488-516 5-33 (216)
410 1ek0_A Protein (GTP-binding pr 88.9 0.21 7.1E-06 47.4 3.0 24 489-512 4-27 (170)
411 2ce2_X GTPase HRAS; signaling 88.8 0.17 5.9E-06 47.6 2.3 23 490-512 5-27 (166)
412 1upt_A ARL1, ADP-ribosylation 88.8 0.24 8.2E-06 47.3 3.4 24 488-511 7-30 (171)
413 1g29_1 MALK, maltose transport 88.8 0.13 4.6E-06 57.9 1.8 26 487-512 28-53 (372)
414 1z0j_A RAB-22, RAS-related pro 88.8 0.21 7.1E-06 47.6 2.9 24 489-512 7-30 (170)
415 1ky3_A GTP-binding protein YPT 88.7 0.2 6.8E-06 48.3 2.8 25 488-512 8-32 (182)
416 2lkc_A Translation initiation 88.7 0.22 7.5E-06 48.0 3.1 25 487-511 7-31 (178)
417 3d31_A Sulfate/molybdate ABC t 88.7 0.11 3.8E-06 58.0 1.1 27 486-512 24-50 (348)
418 1oyw_A RECQ helicase, ATP-depe 88.7 0.63 2.2E-05 54.4 7.5 32 489-520 41-72 (523)
419 2v6i_A RNA helicase; membrane, 88.6 0.91 3.1E-05 51.6 8.6 33 489-521 3-39 (431)
420 1z08_A RAS-related protein RAB 88.6 0.22 7.5E-06 47.5 3.0 24 489-512 7-30 (170)
421 2gk6_A Regulator of nonsense t 88.6 0.19 6.5E-06 60.2 3.0 32 490-521 197-232 (624)
422 1wms_A RAB-9, RAB9, RAS-relate 88.5 0.23 7.8E-06 47.8 3.1 24 489-512 8-31 (177)
423 2zej_A Dardarin, leucine-rich 88.5 0.17 5.8E-06 49.9 2.2 21 490-510 4-24 (184)
424 2nzj_A GTP-binding protein REM 88.4 0.21 7.2E-06 47.9 2.7 23 489-511 5-27 (175)
425 2db3_A ATP-dependent RNA helic 88.4 2.3 7.7E-05 48.2 11.7 54 449-504 53-109 (434)
426 2wji_A Ferrous iron transport 88.4 0.21 7.1E-06 48.3 2.7 22 490-511 5-26 (165)
427 2ew1_A RAS-related protein RAB 88.4 0.57 1.9E-05 47.3 6.0 23 489-511 27-49 (201)
428 3q3j_B RHO-related GTP-binding 88.4 0.25 8.5E-06 50.2 3.4 23 489-511 28-50 (214)
429 2wsm_A Hydrogenase expression/ 88.3 0.3 1E-05 49.4 3.8 25 489-513 31-55 (221)
430 1r2q_A RAS-related protein RAB 88.2 0.23 8E-06 47.1 2.9 23 489-511 7-29 (170)
431 3dkp_A Probable ATP-dependent 88.2 1.3 4.6E-05 45.5 8.8 17 489-505 67-83 (245)
432 2erx_A GTP-binding protein DI- 88.1 0.2 7E-06 47.6 2.4 23 489-511 4-26 (172)
433 2pjz_A Hypothetical protein ST 88.1 0.16 5.4E-06 54.5 1.7 25 488-512 30-54 (263)
434 1c1y_A RAS-related protein RAP 88.1 0.24 8.2E-06 46.9 2.9 23 489-511 4-26 (167)
435 3clv_A RAB5 protein, putative; 88.0 0.28 9.5E-06 47.9 3.3 24 488-511 7-30 (208)
436 2f1r_A Molybdopterin-guanine d 88.0 0.12 4E-06 51.9 0.6 24 490-513 4-27 (171)
437 1g16_A RAS-related protein SEC 87.9 0.21 7.2E-06 47.5 2.3 23 489-511 4-26 (170)
438 3bc1_A RAS-related protein RAB 87.9 0.24 8.3E-06 48.1 2.9 23 489-511 12-34 (195)
439 2wjg_A FEOB, ferrous iron tran 87.9 0.21 7.1E-06 48.8 2.3 23 489-511 8-30 (188)
440 2f7s_A C25KG, RAS-related prot 87.9 1.6 5.6E-05 43.6 9.1 23 489-511 26-48 (217)
441 3b4r_A Putative zinc metallopr 87.9 0.26 8.7E-06 51.9 3.1 56 767-842 50-105 (224)
442 3gd7_A Fusion complex of cysti 87.8 0.17 5.8E-06 57.5 1.8 28 485-512 44-71 (390)
443 2atv_A RERG, RAS-like estrogen 87.8 0.28 9.7E-06 48.6 3.3 25 487-511 27-51 (196)
444 1wp9_A ATP-dependent RNA helic 87.8 1.1 3.9E-05 49.5 8.5 33 490-522 25-61 (494)
445 3q85_A GTP-binding protein REM 87.8 0.24 8.3E-06 47.2 2.7 21 490-510 4-24 (169)
446 4ag6_A VIRB4 ATPase, type IV s 87.7 0.41 1.4E-05 53.5 4.9 26 487-512 34-59 (392)
447 3lv8_A DTMP kinase, thymidylat 87.7 0.26 8.8E-06 52.1 3.0 25 488-512 27-51 (236)
448 3tbk_A RIG-I helicase domain; 87.7 1.7 6E-05 49.6 10.2 34 489-522 20-61 (555)
449 3ld9_A DTMP kinase, thymidylat 87.6 0.3 1E-05 51.2 3.5 27 488-514 21-47 (223)
450 1oxx_K GLCV, glucose, ABC tran 87.6 0.12 4E-06 58.0 0.3 27 486-512 29-55 (353)
451 1z0f_A RAB14, member RAS oncog 87.5 0.27 9.2E-06 47.2 2.9 24 489-512 16-39 (179)
452 2www_A Methylmalonic aciduria 87.5 0.73 2.5E-05 51.2 6.7 24 489-512 75-98 (349)
453 2hxs_A RAB-26, RAS-related pro 87.4 0.24 8.3E-06 47.7 2.5 23 489-511 7-29 (178)
454 2bbs_A Cystic fibrosis transme 87.4 0.16 5.5E-06 55.3 1.3 27 486-512 62-88 (290)
455 4dsu_A GTPase KRAS, isoform 2B 87.3 0.28 9.7E-06 47.6 2.9 24 489-512 5-28 (189)
456 1yrb_A ATP(GTP)binding protein 87.3 0.5 1.7E-05 49.1 4.9 34 488-521 14-49 (262)
457 2p67_A LAO/AO transport system 87.3 0.89 3.1E-05 50.2 7.2 26 487-512 55-80 (341)
458 2efe_B Small GTP-binding prote 87.2 0.3 1E-05 47.2 3.0 23 489-511 13-35 (181)
459 2a9k_A RAS-related protein RAL 87.2 0.29 9.9E-06 47.3 2.9 24 489-512 19-42 (187)
460 3con_A GTPase NRAS; structural 87.2 0.29 9.8E-06 48.0 2.9 24 489-512 22-45 (190)
461 2p5s_A RAS and EF-hand domain 87.1 0.3 1E-05 48.6 3.0 25 487-511 27-51 (199)
462 1wrb_A DJVLGB; RNA helicase, D 87.1 1.5 5.1E-05 45.5 8.5 18 489-506 61-78 (253)
463 2y8e_A RAB-protein 6, GH09086P 87.1 0.25 8.6E-06 47.4 2.3 23 489-511 15-37 (179)
464 2vp4_A Deoxynucleoside kinase; 87.0 0.3 1E-05 50.5 3.1 24 488-511 20-43 (230)
465 4dkx_A RAS-related protein RAB 87.0 0.59 2E-05 48.3 5.3 22 490-511 15-36 (216)
466 1pui_A ENGB, probable GTP-bind 86.9 0.15 5.1E-06 51.0 0.6 27 485-511 23-49 (210)
467 2oil_A CATX-8, RAS-related pro 86.9 0.3 1E-05 48.1 2.8 24 489-512 26-49 (193)
468 3t34_A Dynamin-related protein 86.9 1.8 6E-05 47.9 9.4 25 486-511 33-57 (360)
469 2fn4_A P23, RAS-related protei 86.8 0.27 9.2E-06 47.3 2.4 23 489-511 10-32 (181)
470 3tw8_B RAS-related protein RAB 86.8 0.29 1E-05 47.0 2.6 23 489-511 10-32 (181)
471 3t1o_A Gliding protein MGLA; G 86.7 0.31 1.1E-05 47.5 2.9 24 489-512 15-38 (198)
472 2npi_A Protein CLP1; CLP1-PCF1 86.7 0.25 8.6E-06 57.2 2.5 28 485-512 135-162 (460)
473 3q72_A GTP-binding protein RAD 86.7 0.24 8.3E-06 47.1 2.0 21 490-510 4-24 (166)
474 1mh1_A RAC1; GTP-binding, GTPa 86.6 0.3 1E-05 47.3 2.6 23 489-511 6-28 (186)
475 3l9o_A ATP-dependent RNA helic 86.6 0.99 3.4E-05 57.8 8.0 33 489-521 200-235 (1108)
476 3bwd_D RAC-like GTP-binding pr 86.6 0.38 1.3E-05 46.4 3.4 24 488-511 8-31 (182)
477 1dek_A Deoxynucleoside monopho 86.5 0.23 7.7E-06 52.8 1.8 26 491-516 4-29 (241)
478 3tui_C Methionine import ATP-b 86.5 0.26 9E-06 55.5 2.4 27 486-512 52-78 (366)
479 2g6b_A RAS-related protein RAB 86.4 0.33 1.1E-05 46.8 2.9 24 489-512 11-34 (180)
480 2bme_A RAB4A, RAS-related prot 86.4 0.28 9.7E-06 47.6 2.3 24 489-512 11-34 (186)
481 4b4t_L 26S protease subunit RP 86.4 0.15 5E-06 58.9 0.3 46 713-758 172-225 (437)
482 1m7b_A RND3/RHOE small GTP-bin 86.3 0.29 9.8E-06 48.0 2.3 23 489-511 8-30 (184)
483 3kkq_A RAS-related protein M-R 86.3 0.34 1.2E-05 47.0 2.9 23 489-511 19-41 (183)
484 1f2t_A RAD50 ABC-ATPase; DNA d 86.3 0.35 1.2E-05 47.1 2.9 23 490-512 25-47 (149)
485 1svi_A GTP-binding protein YSX 86.3 0.28 9.6E-06 48.2 2.3 24 488-511 23-46 (195)
486 2gj8_A MNME, tRNA modification 86.3 0.26 9E-06 48.2 2.0 23 489-511 5-27 (172)
487 2eyq_A TRCF, transcription-rep 86.2 3 0.0001 53.6 12.1 35 487-521 623-660 (1151)
488 2hf9_A Probable hydrogenase ni 86.1 0.35 1.2E-05 49.1 2.9 25 488-512 38-62 (226)
489 2gf9_A RAS-related protein RAB 86.1 0.35 1.2E-05 47.5 2.9 24 489-512 23-46 (189)
490 1moz_A ARL1, ADP-ribosylation 86.0 0.31 1.1E-05 47.2 2.4 25 486-510 16-40 (183)
491 3tkl_A RAS-related protein RAB 86.0 0.36 1.2E-05 47.3 2.9 24 489-512 17-40 (196)
492 2qag_B Septin-6, protein NEDD5 86.0 0.34 1.2E-05 55.7 3.0 21 491-511 45-65 (427)
493 3nh6_A ATP-binding cassette SU 85.9 0.17 5.7E-06 55.6 0.4 29 485-513 77-105 (306)
494 2wjy_A Regulator of nonsense t 85.9 0.33 1.1E-05 60.0 3.0 23 490-512 373-395 (800)
495 4tmk_A Protein (thymidylate ki 85.8 0.38 1.3E-05 49.9 3.1 24 489-512 4-27 (213)
496 1m2o_B GTP-binding protein SAR 85.8 0.34 1.2E-05 48.1 2.6 23 489-511 24-46 (190)
497 1ksh_A ARF-like protein 2; sma 85.7 0.31 1E-05 47.6 2.2 27 486-512 16-42 (186)
498 2dpy_A FLII, flagellum-specifi 85.7 0.54 1.9E-05 54.1 4.5 28 488-515 157-184 (438)
499 2bov_A RAla, RAS-related prote 85.7 0.38 1.3E-05 47.6 2.9 24 489-512 15-38 (206)
500 1x3s_A RAS-related protein RAB 85.7 0.38 1.3E-05 47.0 2.9 24 489-512 16-39 (195)
No 1
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=100.00 E-value=7.6e-79 Score=707.44 Aligned_cols=441 Identities=32% Similarity=0.494 Sum_probs=370.6
Q ss_pred CCCCCCCcccCcHHHHHHHHHHHHhhcChhHHHhcCCCCCceeEecCCCCCChHHHHHHHHHHcCCCEEEeechhhhhhh
Q 035561 449 NPPIPLKDFASVESMREEINEVVAFLQNPSAFQEMGARAPRGVLIVGERGTGKTSLALAIAAEARVPVVNVEAQELEAGL 528 (979)
Q Consensus 449 ~~~~~f~DIvGleevke~L~eiV~~L~~p~~f~~lG~~~P~gVLL~GPPGTGKTtLArAlA~elg~~~i~Is~sdL~~~~ 528 (979)
.+.++|+||+|+++++++|++++.++.++..|..+|.+.|+|+||+||||||||++|+++|++++.||+.++++++. +.
T Consensus 10 ~~~~~f~di~G~~~~~~~l~e~v~~l~~~~~~~~~g~~~p~gvLL~GppGtGKT~Laraia~~~~~~f~~is~~~~~-~~ 88 (476)
T 2ce7_A 10 NKRVTFKDVGGAEEAIEELKEVVEFLKDPSKFNRIGARMPKGILLVGPPGTGKTLLARAVAGEANVPFFHISGSDFV-EL 88 (476)
T ss_dssp SCCCCGGGCCSCHHHHHHHHHHHHHHHCTHHHHTTTCCCCSEEEEECCTTSSHHHHHHHHHHHHTCCEEEEEGGGTT-TC
T ss_pred CCCCCHHHhCCcHHHHHHHHHHHHHhhChHHHhhcCCCCCCeEEEECCCCCCHHHHHHHHHHHcCCCeeeCCHHHHH-HH
Confidence 56789999999999999999999999999999999999999999999999999999999999999999999999998 67
Q ss_pred hcccchhhHHHHHHHHHhcCCeEEEEcCccccccccccccCCCchhhHHHHHHHHhhhcccccCCeEEEEecccchhhch
Q 035561 529 WVGQSASNVRELFQTARDLAPVIIFVEDFDLFAGVRGQFIHTKQQDHESFINQLLVELDGFEKQDGVVLMATTRNIKQID 608 (979)
Q Consensus 529 ~vG~~~~~Ir~lF~~A~~~aP~ILfIDEIDaL~~~r~~~~~~~~~~~~~iln~LL~~LDg~~~~~~ViVIATTN~pe~LD 608 (979)
|.|.+..+++.+|..|+..+||||||||+|.++++++...++.+....+++++|+..||++....+++||+|||+++.||
T Consensus 89 ~~g~~~~~~r~lf~~A~~~~p~ILfIDEid~l~~~r~~~~~g~~~~~~~~l~~LL~~ld~~~~~~~viVIaaTn~~~~Ld 168 (476)
T 2ce7_A 89 FVGVGAARVRDLFAQAKAHAPCIVFIDEIDAVGRHRGAGLGGGHDEREQTLNQLLVEMDGFDSKEGIIVMAATNRPDILD 168 (476)
T ss_dssp CTTHHHHHHHHHHHHHHHTCSEEEEEETGGGTCCC---------CHHHHHHHHHHHHHHHSCGGGTEEEEEEESCGGGSC
T ss_pred HhcccHHHHHHHHHHHHhcCCCEEEEechhhhhhhcccccCcCcHHHHHHHHHHHHHHhccCCCCCEEEEEecCChhhhc
Confidence 89999999999999999999999999999999988765444556667889999999999998778899999999999999
Q ss_pred hhhhcCCceeeEeccCCCCHHHHHHHHHHHHHhccchhhhhhhhHHHHHHHcCCCCHHHHHHHHHHHhhhhhccCCCChH
Q 035561 609 EALQRPGRMDRIFNLQKPTQSEREKILRIAAQETMDEELIDLVDWRKVAEKTALLRPIELKLVPVALEGSAFRSKFLDTD 688 (979)
Q Consensus 609 pALlRpgRFd~~I~~~~Pd~eeR~~IL~~~l~~~~~~~l~~dvdL~~LA~~T~GfsgaDL~~Lv~aa~~aa~r~~~~s~~ 688 (979)
|+++|||||++.+.++.|+.++|.+|++.++++. +..+++++..+|..|+||+|+||.++|+.+...+.++
T Consensus 169 ~allR~gRFd~~i~i~~Pd~~~R~~Il~~~~~~~---~l~~~v~l~~la~~t~G~sgadL~~lv~~Aal~A~~~------ 239 (476)
T 2ce7_A 169 PALLRPGRFDKKIVVDPPDMLGRKKILEIHTRNK---PLAEDVNLEIIAKRTPGFVGADLENLVNEAALLAARE------ 239 (476)
T ss_dssp GGGGSTTSSCEEEECCCCCHHHHHHHHHHHHTTS---CBCTTCCHHHHHHTCTTCCHHHHHHHHHHHHHHHHHT------
T ss_pred hhhcccCcceeEeecCCCCHHHHHHHHHHHHHhC---CCcchhhHHHHHHhcCCCcHHHHHHHHHHHHHHHHHc------
Confidence 9999999999999999999999999999999875 4557788999999999999999999986654332211
Q ss_pred HHhhhcchhhhccCCCccccccchhhhhhhhhhhhhcCccccHHHHHHHHHhhhccccccccccccCCCCccccccccch
Q 035561 689 ELMSYCGWFATFSGVVPKWFRKTKIVKKISRMLVDHLGLTLTKEDLQNVVDLMEPYGQISNGIELLTPPLDWTRETKLPH 768 (979)
Q Consensus 689 ei~~~~d~~aAl~~~~P~~lR~~~llk~~~v~w~DiGGl~vtkedL~eAIe~~~kyg~i~aG~e~~sp~l~~~~eek~~i 768 (979)
+...++.+|+.++++. +..|.++++..+ +++++..+
T Consensus 240 ------------------------------------~~~~I~~~dl~~al~~------v~~~~~~~~~~~--~~~e~~~~ 275 (476)
T 2ce7_A 240 ------------------------------------GRDKITMKDFEEAIDR------VIAGPARKSLLI--SPAEKRII 275 (476)
T ss_dssp ------------------------------------TCSSBCHHHHHHHHHH------HC--------CC--CHHHHHHH
T ss_pred ------------------------------------CCCeecHHHHHHHHHH------HhcCccccchhh--hcchhhhh
Confidence 1235788999999986 456666665544 77889999
Q ss_pred hhhhhhHHHHHhhcCCCCccceEEeecCCcCcceeeeeccccccCCCCCCcccHHHHHHHHHHHhhhHHHHHhhcccccc
Q 035561 769 AVWAAGRGLIALLLPNFDTVDNLWLEPCAWEGIGCTKITKAEKEGSMSGNPESRSYLEKKLVFCFGSYAAAQLLLPFGEE 848 (979)
Q Consensus 769 AyHEAGHALVa~lLp~~dpV~kVtIiPrg~~alG~t~~~~~~~~~~~~~~~~Tk~~L~~~I~vlLgGRaAEElvlgfG~~ 848 (979)
||||+|||++++++|+.+|+++|||+|||+.++|||++.|.+ ++++.||++|+++|+++|||||||+++ ||++
T Consensus 276 a~~e~G~a~~~~~l~~~~~~~~~~i~prg~~alg~~~~~p~~-----~~~~~~~~~l~~~i~~~l~Gr~ae~~~--~g~~ 348 (476)
T 2ce7_A 276 AYHEAGHAVVSTVVPNGEPVHRISIIPRGYKALGYTLHLPEE-----DKYLVSRNELLDKLTALLGGRAAEEVV--FGDV 348 (476)
T ss_dssp HHHHHHHHHHHHHSTTCCCCCEEECC----------------------CCSCBHHHHHHHHHHHTHHHHHHHHH--HSSC
T ss_pred HHHHhhhHHHhhccCCccccceeeeecCcccccceEEEcCcc-----cccccCHHHHHHHHHHHHhHHHHHhhh--cCCC
Confidence 999999999999999999999999999998899999998753 456799999999999999999999999 8999
Q ss_pred cccChhHHHHHHHHHHHHHHHhCCCCCCCCccccccchh--------hhccCCCChHHHHHHHHHHHHHHHHHHHHHHHH
Q 035561 849 NLLSSSEIKQAQEIATRMVLQYGWGPDDSPAIYYSSNAA--------AAMSMGSNHEYEMATKVEKVYDLAYYKAKEMLQ 920 (979)
Q Consensus 849 stGAs~Dl~~AT~iAr~MV~~~GMs~~~g~l~~~~~~~~--------~~~~~s~~~~~~id~EV~kil~~Ay~rAk~IL~ 920 (979)
||||+|||++||+||+.||++||||+.+|++.|...+.. ....+|++++..+|.||++++++||++|++||+
T Consensus 349 ~~ga~~Dl~~at~~a~~mv~~~gm~~~~g~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~v~~~~~~~~~~~~~~l~ 428 (476)
T 2ce7_A 349 TSGAANDIERATEIARNMVCQLGMSEELGPLAWGKEEQEVFLGKEITRLRNYSEEVASKIDEEVKKIVTNCYERAKEIIR 428 (476)
T ss_dssp CGGGHHHHHHHHHHHHHHHHTSCCCTTTCSCCCCC-------------CCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CcccHHHHHHHHHHHHHHHHHhCCCCcCCceeecCCCccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999998765432 124578889999999999999999999999999
Q ss_pred HhHHHHHHHHHHHHHhcccCHHHHHHHHhh
Q 035561 921 KNRKVLEKVVEELLEYEILTGKDLERLMDS 950 (979)
Q Consensus 921 eNr~~L~~LAeaLLEkEtL~~eEi~~Il~~ 950 (979)
+|++.|++||++|+|+|||+++||++|+++
T Consensus 429 ~~~~~l~~~a~~l~~~e~l~~~~~~~~~~~ 458 (476)
T 2ce7_A 429 KYRKQLDNIVEILLEKETIEGDELRRILSE 458 (476)
T ss_dssp HTHHHHHHHHHHHHHHSEEEHHHHHHHTC-
T ss_pred HhHHHHHHHHHHHHHhCeeCHHHHHHHhcc
Confidence 999999999999999999999999999963
No 2
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=100.00 E-value=4.1e-75 Score=679.64 Aligned_cols=441 Identities=33% Similarity=0.496 Sum_probs=390.9
Q ss_pred CCCCCCcccCcHHHHHHHHHHHHhhcChhHHHhcCCCCCceeEecCCCCCChHHHHHHHHHHcCCCEEEeechhhhhhhh
Q 035561 450 PPIPLKDFASVESMREEINEVVAFLQNPSAFQEMGARAPRGVLIVGERGTGKTSLALAIAAEARVPVVNVEAQELEAGLW 529 (979)
Q Consensus 450 ~~~~f~DIvGleevke~L~eiV~~L~~p~~f~~lG~~~P~gVLL~GPPGTGKTtLArAlA~elg~~~i~Is~sdL~~~~~ 529 (979)
++++|+||+|+++++++|++++.++.++..|..+|.+.|+|+||+||||||||+||+++|++++.+++.++++++. +.+
T Consensus 26 ~~~~f~dv~G~~~~k~~l~~lv~~l~~~~~~~~lg~~ip~GvLL~GppGtGKTtLaraIa~~~~~~~i~i~g~~~~-~~~ 104 (499)
T 2dhr_A 26 PKVTFKDVAGAEEAKEELKEIVEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEARVPFITASGSDFV-EMF 104 (499)
T ss_dssp CCCCTTSSCSCHHHHHHHHHHHHHHHCGGGTTTTSCCCCSEEEEECSSSSSHHHHHHHHHHHTTCCEEEEEGGGGT-SSC
T ss_pred CCCCHHHcCCcHHHHHHHHHHHHHhhchhhhhhccCCCCceEEEECCCCCCHHHHHHHHHHHhCCCEEEEehhHHH-Hhh
Confidence 6789999999999999999999999999999999999999999999999999999999999999999999999997 678
Q ss_pred cccchhhHHHHHHHHHhcCCeEEEEcCccccccccccccCCCchhhHHHHHHHHhhhcccccCCeEEEEecccchhhchh
Q 035561 530 VGQSASNVRELFQTARDLAPVIIFVEDFDLFAGVRGQFIHTKQQDHESFINQLLVELDGFEKQDGVVLMATTRNIKQIDE 609 (979)
Q Consensus 530 vG~~~~~Ir~lF~~A~~~aP~ILfIDEIDaL~~~r~~~~~~~~~~~~~iln~LL~~LDg~~~~~~ViVIATTN~pe~LDp 609 (979)
.|.....++.+|+.+....|||+||||||.+++.++......++...+++++++.+|+++.....++++|+||+|+.||+
T Consensus 105 ~g~~~~~v~~lfq~a~~~~p~il~IDEId~l~~~r~~~~~~~~~e~~~~l~~LL~~Ldg~~~~~~viviAatn~p~~LD~ 184 (499)
T 2dhr_A 105 VGVGAARVRDLFETAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMDGFEKDTAIVVMAATNRPDILDP 184 (499)
T ss_dssp TTHHHHHHHHHTTTSSSSSSCEEEEECGGGTCCCSSSSTTTSSHHHHHHHHHHHHHGGGCCSSCCCEEEECCSCGGGSCT
T ss_pred hhhHHHHHHHHHHHHHhcCCCEEEEehHHHHHHhhccCcCCCcHHHHHHHHHHHHHhcccccCccEEEEEecCChhhcCc
Confidence 89999999999999988899999999999998776543233456677899999999999988888999999999999999
Q ss_pred hhhcCCceeeEeccCCCCHHHHHHHHHHHHHhccchhhhhhhhHHHHHHHcCCCCHHHHHHHHHHHhhhhhccCCCChHH
Q 035561 610 ALQRPGRMDRIFNLQKPTQSEREKILRIAAQETMDEELIDLVDWRKVAEKTALLRPIELKLVPVALEGSAFRSKFLDTDE 689 (979)
Q Consensus 610 ALlRpgRFd~~I~~~~Pd~eeR~~IL~~~l~~~~~~~l~~dvdL~~LA~~T~GfsgaDL~~Lv~aa~~aa~r~~~~s~~e 689 (979)
+++|||||++.|.|+.|+.++|.+||+.++++. .+.+++++..+|..|+||+|+||+++|+.+...+.++
T Consensus 185 aLlr~gRfdr~i~i~~Pd~~~R~~IL~~~~~~~---~l~~dv~l~~lA~~t~G~~gadL~~lv~~Aa~~A~~~------- 254 (499)
T 2dhr_A 185 ALLRPGRFDRQIAIDAPDVKGREQILRIHARGK---PLAEDVDLALLAKRTPGFVGADLENLLNEAALLAARE------- 254 (499)
T ss_dssp TTSSTTSSCCEEECCCCCHHHHHHHHHHTTSSS---CCCCSSTTHHHHTTSCSCCHHHHHHHHHHHHHHHTTT-------
T ss_pred ccccccccceEEecCCCCHHHHHHHHHHHHhcC---CCChHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHh-------
Confidence 999999999999999999999999999988654 4567889999999999999999999987654332211
Q ss_pred HhhhcchhhhccCCCccccccchhhhhhhhhhhhhcCccccHHHHHHHHHhhhccccccccccccCCCCccccccccchh
Q 035561 690 LMSYCGWFATFSGVVPKWFRKTKIVKKISRMLVDHLGLTLTKEDLQNVVDLMEPYGQISNGIELLTPPLDWTRETKLPHA 769 (979)
Q Consensus 690 i~~~~d~~aAl~~~~P~~lR~~~llk~~~v~w~DiGGl~vtkedL~eAIe~~~kyg~i~aG~e~~sp~l~~~~eek~~iA 769 (979)
+...++.+|+.++++. +..|.++++..+ ++++|+++|
T Consensus 255 -----------------------------------~~~~It~~dl~~al~~------v~~~~~~~~~~~--~~~e~~~~a 291 (499)
T 2dhr_A 255 -----------------------------------GRRKITMKDLEEAADR------VMMLPAKKSLVL--SPRDRRITA 291 (499)
T ss_dssp -----------------------------------CCSSCCSHHHHHHHHH------HTTCSSSSCCCC--CTTHHHHHH
T ss_pred -----------------------------------CCCccCHHHHHHHHHH------Hhcccccccchh--hHHHHhhhH
Confidence 1235678899999985 456777666554 788899999
Q ss_pred hhhhhHHHHHhhcCCCCccceEEeecCCcCcceeeeeccccccCCCCCCcccHHHHHHHHHHHhhhHHHHHhhccccccc
Q 035561 770 VWAAGRGLIALLLPNFDTVDNLWLEPCAWEGIGCTKITKAEKEGSMSGNPESRSYLEKKLVFCFGSYAAAQLLLPFGEEN 849 (979)
Q Consensus 770 yHEAGHALVa~lLp~~dpV~kVtIiPrg~~alG~t~~~~~~~~~~~~~~~~Tk~~L~~~I~vlLgGRaAEElvlgfG~~s 849 (979)
|||+|||+++++|++.++|+++||+||+ +++|||+ |... +.++.||++|+++|+++|||||||+++ ||++|
T Consensus 292 ~~e~g~av~~~~l~~~~~v~~~~i~pr~-~~~g~~~--p~q~----~~~~~t~~~l~~~i~~~lgGr~ae~~~--~g~~~ 362 (499)
T 2dhr_A 292 YHEAGHALAAHFLEHADGVHKVTIVPRG-RALGFMM--PRRE----DMLHWSRKRLLDQIAVALAGRAAEEIV--FDDVT 362 (499)
T ss_dssp HHHHHHHHHHCCSSSCCCCCCEESCCSS-CTTCSSH--HHHT----TCCCCCHHHHHHHHHHHHHHHHHHHHH--SCSCC
T ss_pred HHHHHHHHHHhhcCCCCeeeEEEeecCC-CcCcccc--cchh----hhhccCHHHHHHHHHHHhhhHhHHHhh--hcccC
Confidence 9999999999999999999999999999 6789997 3211 446689999999999999999999999 89999
Q ss_pred ccChhHHHHHHHHHHHHHHHhCCCCCCCCccccccchh-----hhccCCCChHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Q 035561 850 LLSSSEIKQAQEIATRMVLQYGWGPDDSPAIYYSSNAA-----AAMSMGSNHEYEMATKVEKVYDLAYYKAKEMLQKNRK 924 (979)
Q Consensus 850 tGAs~Dl~~AT~iAr~MV~~~GMs~~~g~l~~~~~~~~-----~~~~~s~~~~~~id~EV~kil~~Ay~rAk~IL~eNr~ 924 (979)
|||+|||++||+||+.||++||||+.+|++.|...+.. ....+|+.++..||.||++++++||++|++||++|++
T Consensus 363 ~ga~~Dl~~at~~a~~mv~~~gm~~~~g~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~v~~~~~~~~~~~~~~l~~~~~ 442 (499)
T 2dhr_A 363 TGAENDFRQATELARRMITEWGMHPEFGPVAYAVREDTYLGGYDVRQYSEETAKRIDEAVRRLIEEQYQRVKALLLEKRE 442 (499)
T ss_dssp BCCCHHHHHHHHHHHHHHTTSCCCSSSCSCCCCCCCCCSSCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHH
T ss_pred cccHHHHHHHHHHHHHHHHHhCCCCCCCceeecCCCccccccccccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999988765431 1245788889999999999999999999999999999
Q ss_pred HHHHHHHHHHHhcccCHHHHHHHHhhcCC
Q 035561 925 VLEKVVEELLEYEILTGKDLERLMDSNGG 953 (979)
Q Consensus 925 ~L~~LAeaLLEkEtL~~eEi~~Il~~~~~ 953 (979)
.|++||++|+|+|||+++||++|++....
T Consensus 443 ~l~~~a~~l~~~e~l~~~~~~~~~~~~~~ 471 (499)
T 2dhr_A 443 VLERVAETLLERETLTAEEFQRVVEGLPL 471 (499)
T ss_dssp HHHHHHHHHHHHSEECHHHHHHHHTTCCC
T ss_pred HHHHHHHHHHHhCeeCHHHHHHHhccCCC
Confidence 99999999999999999999999986543
No 3
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=3.5e-48 Score=439.85 Aligned_cols=235 Identities=32% Similarity=0.491 Sum_probs=219.6
Q ss_pred hcccCCCCCCCCcccCcHHHHHHHHHHHHh-hcChhHHHhcCCCCCceeEecCCCCCChHHHHHHHHHHcCCCEEEeech
Q 035561 444 MKRVKNPPIPLKDFASVESMREEINEVVAF-LQNPSAFQEMGARAPRGVLIVGERGTGKTSLALAIAAEARVPVVNVEAQ 522 (979)
Q Consensus 444 l~~v~~~~~~f~DIvGleevke~L~eiV~~-L~~p~~f~~lG~~~P~gVLL~GPPGTGKTtLArAlA~elg~~~i~Is~s 522 (979)
+...+.|+++|+||+|++++|++|++.|.+ +++|+.|..+|+++|+|+|||||||||||++|+|+|++++.+|+.++++
T Consensus 137 ~~~~~~p~v~~~dIgGl~~~k~~l~e~v~~Pl~~pe~f~~~gi~~prGvLL~GPPGTGKTllAkAiA~e~~~~f~~v~~s 216 (405)
T 4b4t_J 137 MMVEKVPDSTYDMVGGLTKQIKEIKEVIELPVKHPELFESLGIAQPKGVILYGPPGTGKTLLARAVAHHTDCKFIRVSGA 216 (405)
T ss_dssp CEEECSCSCCGGGSCSCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCCCEEEESCSSSSHHHHHHHHHHHHTCEEEEEEGG
T ss_pred ccccCCCCCCHHHhCCHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCceEEeCCCCCCHHHHHHHHHHhhCCCceEEEhH
Confidence 334467899999999999999999999988 9999999999999999999999999999999999999999999999999
Q ss_pred hhhhhhhcccchhhHHHHHHHHHhcCCeEEEEcCccccccccccccCCCchhhHHHHHHHHhhhcccccCCeEEEEeccc
Q 035561 523 ELEAGLWVGQSASNVRELFQTARDLAPVIIFVEDFDLFAGVRGQFIHTKQQDHESFINQLLVELDGFEKQDGVVLMATTR 602 (979)
Q Consensus 523 dL~~~~~vG~~~~~Ir~lF~~A~~~aP~ILfIDEIDaL~~~r~~~~~~~~~~~~~iln~LL~~LDg~~~~~~ViVIATTN 602 (979)
++. ++|+|+++..++.+|..|+.++||||||||+|+++++|+...++++....+++++||.+||++....+|+||||||
T Consensus 217 ~l~-sk~vGese~~vr~lF~~Ar~~aP~IIFiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~~~~~V~vIaATN 295 (405)
T 4b4t_J 217 ELV-QKYIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSTRVEGSGGGDSEVQRTMLELLNQLDGFETSKNIKIIMATN 295 (405)
T ss_dssp GGS-CSSTTHHHHHHHHHHHHHHHTCSEEEEEESSSCCTTSCSCSSSGGGGHHHHHHHHHHHHHHTTTCCCCEEEEEEES
T ss_pred Hhh-ccccchHHHHHHHHHHHHHHhCCceEeeecchhhccCCCCCCCCCcHHHHHHHHHHHHhhhccCCCCCeEEEeccC
Confidence 998 7899999999999999999999999999999999998876555566677889999999999999999999999999
Q ss_pred chhhchhhhhcCCceeeEeccCCCCHHHHHHHHHHHHHhccchhhhhhhhHHHHHHHcCCCCHHHHHHHHHHHhhhhhcc
Q 035561 603 NIKQIDEALQRPGRMDRIFNLQKPTQSEREKILRIAAQETMDEELIDLVDWRKVAEKTALLRPIELKLVPVALEGSAFRS 682 (979)
Q Consensus 603 ~pe~LDpALlRpgRFd~~I~~~~Pd~eeR~~IL~~~l~~~~~~~l~~dvdL~~LA~~T~GfsgaDL~~Lv~aa~~aa~r~ 682 (979)
+|+.|||||+||||||+.|+|+.||.++|.+||+.|+++. ++.+++|+..||+.|+||||+||+++|+.+...++++
T Consensus 296 rpd~LDpAllRpGRfD~~I~i~lPd~~~R~~Il~~~~~~~---~l~~dvdl~~lA~~t~G~SGADi~~l~~eA~~~Air~ 372 (405)
T 4b4t_J 296 RLDILDPALLRPGRIDRKIEFPPPSVAARAEILRIHSRKM---NLTRGINLRKVAEKMNGCSGADVKGVCTEAGMYALRE 372 (405)
T ss_dssp CSSSSCHHHHSTTSSCCEEECCCCCHHHHHHHHHHHHTTS---BCCSSCCHHHHHHHCCSCCHHHHHHHHHHHHHHHHHT
T ss_pred ChhhCCHhHcCCCcCceEEEcCCcCHHHHHHHHHHHhcCC---CCCccCCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHc
Confidence 9999999999999999999999999999999999999875 4567899999999999999999999998887776654
No 4
>2di4_A Zinc protease, cell division protein FTSH homolog; metalloproteinase, hexamer-ring, hydrolase; 2.79A {Aquifex aeolicus} SCOP: a.269.1.1
Probab=100.00 E-value=3.2e-48 Score=411.96 Aligned_cols=197 Identities=21% Similarity=0.283 Sum_probs=158.0
Q ss_pred cccccccCCCCccccccccchhhhhhhHHHHHhhcCCCCccceEEeecCCcCcceeeeeccccccCCCCCCcccHHHHHH
Q 035561 748 SNGIELLTPPLDWTRETKLPHAVWAAGRGLIALLLPNFDTVDNLWLEPCAWEGIGCTKITKAEKEGSMSGNPESRSYLEK 827 (979)
Q Consensus 748 ~aG~e~~sp~l~~~~eek~~iAyHEAGHALVa~lLp~~dpV~kVtIiPrg~~alG~t~~~~~~~~~~~~~~~~Tk~~L~~ 827 (979)
++|++++++.+ ++++|++||||||||||||++||+++||+||||+||| .++|||++.|.+ ++++.||++|++
T Consensus 1 ~~G~ekk~~~~--s~~ek~~vAyHEAGHAlva~~l~~~~pV~KVTIiPRG-~alG~t~~~P~e-----d~~~~tk~~l~~ 72 (238)
T 2di4_A 1 FQGPLGSHMTI--SPKEKEKIAIHEAGHALMGLVSDDDDKVHKISIIPRG-MALGVTQQLPIE-----DKHIYDKKDLYN 72 (238)
T ss_dssp ---------CC--CHHHHHHHHHHHHHHHHHHHHCSSCCCCCCEECC----------------------CCCCBHHHHHH
T ss_pred CCCccccCCCC--CHHHHHHHHHHHHHHHHHHHHcCCCCceeEEEEeecC-CcceEEEeCCcc-----cccccCHHHHHH
Confidence 36889988876 8999999999999999999999999999999999999 688999988753 457799999999
Q ss_pred HHHHHhhhHHHHHhhcccccccccChhHHHHHHHHHHHHHHHhCCCCCCCCccccccchh------hhccCCCChHHHHH
Q 035561 828 KLVFCFGSYAAAQLLLPFGEENLLSSSEIKQAQEIATRMVLQYGWGPDDSPAIYYSSNAA------AAMSMGSNHEYEMA 901 (979)
Q Consensus 828 ~I~vlLgGRaAEElvlgfG~~stGAs~Dl~~AT~iAr~MV~~~GMs~~~g~l~~~~~~~~------~~~~~s~~~~~~id 901 (979)
+|+|+|||||||+|+||.|++||||+|||++||+||+.||++||||+.+||+.|...+.. ...++|+.++..||
T Consensus 73 ~i~v~LgGRaAEelifG~g~vttGA~~Dl~~AT~iAr~MV~~~GMs~~lG~v~~~~~~~~flg~~~~~~~~Se~ta~~iD 152 (238)
T 2di4_A 73 KILVLLGGRAAEEVFFGKDGITTGAENDLQRATDLAYRMVSMWGMSDKVGPIAIRRVANPFLGGMTTAVDTSPDLLREID 152 (238)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCCGGGHHHHHHHHHHHHHHHHTSCCCTTTCSCCCCC----------CCCSCCHHHHHHHH
T ss_pred HHHHHHhHHHHHHHHhCCCCcccChHhHHHHHHHHHHHHHHHhCCCCCCCceeecCCccccccccccccccCHHHHHHHH
Confidence 999999999999999444899999999999999999999999999999999998754331 12457888999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhcccCHHHHHHHHhhcC
Q 035561 902 TKVEKVYDLAYYKAKEMLQKNRKVLEKVVEELLEYEILTGKDLERLMDSNG 952 (979)
Q Consensus 902 ~EV~kil~~Ay~rAk~IL~eNr~~L~~LAeaLLEkEtL~~eEi~~Il~~~~ 952 (979)
.||+++++.||++|++||++|++.|++||++|||+|||+++||.+|++..+
T Consensus 153 ~Ev~~il~~ay~~a~~iL~~nr~~L~~lA~~Lle~EtL~~~ei~~il~~~~ 203 (238)
T 2di4_A 153 EEVKRIITEQYEKAKAIVEEYKEPLKAVVKKLLEKETITCEEFVEVFKLYG 203 (238)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHSEECHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCeeCHHHHHHHHccCC
Confidence 999999999999999999999999999999999999999999999998764
No 5
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=5.6e-47 Score=431.53 Aligned_cols=233 Identities=29% Similarity=0.482 Sum_probs=218.6
Q ss_pred ccCCCCCCCCcccCcHHHHHHHHHHHHh-hcChhHHHhcCCCCCceeEecCCCCCChHHHHHHHHHHcCCCEEEeechhh
Q 035561 446 RVKNPPIPLKDFASVESMREEINEVVAF-LQNPSAFQEMGARAPRGVLIVGERGTGKTSLALAIAAEARVPVVNVEAQEL 524 (979)
Q Consensus 446 ~v~~~~~~f~DIvGleevke~L~eiV~~-L~~p~~f~~lG~~~P~gVLL~GPPGTGKTtLArAlA~elg~~~i~Is~sdL 524 (979)
..+.|+++|+||+|++++|++|++.+.+ +++|+.|..+|+++|+|||||||||||||++|+|+|++++.+|+.++++++
T Consensus 173 ~~~~p~v~~~DIgGld~~k~~L~e~v~~Pl~~pe~f~~~Gi~~prGvLLyGPPGTGKTlLAkAiA~e~~~~fi~v~~s~l 252 (437)
T 4b4t_I 173 MDKSPTESYSDIGGLESQIQEIKESVELPLTHPELYEEMGIKPPKGVILYGAPGTGKTLLAKAVANQTSATFLRIVGSEL 252 (437)
T ss_dssp EESSCCCCGGGTCSCHHHHHHHHHHHHHHHHCCHHHHHHTCCCCSEEEEESSTTTTHHHHHHHHHHHHTCEEEEEESGGG
T ss_pred eccCCCCcceecCcHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCCCceECCCCchHHHHHHHHHHHhCCCEEEEEHHHh
Confidence 3467899999999999999999999988 999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhcccchhhHHHHHHHHHhcCCeEEEEcCccccccccccccCCCchhhHHHHHHHHhhhcccccCCeEEEEecccch
Q 035561 525 EAGLWVGQSASNVRELFQTARDLAPVIIFVEDFDLFAGVRGQFIHTKQQDHESFINQLLVELDGFEKQDGVVLMATTRNI 604 (979)
Q Consensus 525 ~~~~~vG~~~~~Ir~lF~~A~~~aP~ILfIDEIDaL~~~r~~~~~~~~~~~~~iln~LL~~LDg~~~~~~ViVIATTN~p 604 (979)
. ++|+|+++..++.+|..|+.++||||||||+|+++++|+.....++....+++++||.+||++...++|+||||||+|
T Consensus 253 ~-sk~vGesek~ir~lF~~Ar~~aP~IIfiDEiDai~~~R~~~~~~~~~~~~~~l~~LL~~lDg~~~~~~ViVIaATNrp 331 (437)
T 4b4t_I 253 I-QKYLGDGPRLCRQIFKVAGENAPSIVFIDEIDAIGTKRYDSNSGGEREIQRTMLELLNQLDGFDDRGDVKVIMATNKI 331 (437)
T ss_dssp C-CSSSSHHHHHHHHHHHHHHHTCSEEEEEEEESSSSCCCSCSSCSSCCHHHHHHHHHHHHHHHCCCSSSEEEEEEESCS
T ss_pred h-hccCchHHHHHHHHHHHHHhcCCcEEEEehhhhhcccCCCCCCCccHHHHHHHHHHHHHhhCcCCCCCEEEEEeCCCh
Confidence 8 789999999999999999999999999999999999997665566667789999999999999999999999999999
Q ss_pred hhchhhhhcCCceeeEeccCCCCHHHHHHHHHHHHHhccchhhhhhhhHHHHHHHcCCCCHHHHHHHHHHHhhhhhcc
Q 035561 605 KQIDEALQRPGRMDRIFNLQKPTQSEREKILRIAAQETMDEELIDLVDWRKVAEKTALLRPIELKLVPVALEGSAFRS 682 (979)
Q Consensus 605 e~LDpALlRpgRFd~~I~~~~Pd~eeR~~IL~~~l~~~~~~~l~~dvdL~~LA~~T~GfsgaDL~~Lv~aa~~aa~r~ 682 (979)
+.|||||+||||||+.|+|+.||.++|.+||+.|+++. .+.+++|++.||+.|+||||+||+++|+.+...++++
T Consensus 332 d~LDpALlRpGRfD~~I~v~lPd~~~R~~Il~~~l~~~---~l~~dvdl~~LA~~T~GfSGADI~~l~~eA~~~Air~ 406 (437)
T 4b4t_I 332 ETLDPALIRPGRIDRKILFENPDLSTKKKILGIHTSKM---NLSEDVNLETLVTTKDDLSGADIQAMCTEAGLLALRE 406 (437)
T ss_dssp TTCCTTSSCTTTEEEEECCCCCCHHHHHHHHHHHHTTS---CBCSCCCHHHHHHHCCSCCHHHHHHHHHHHHHHHHHT
T ss_pred hhcCHHHhcCCceeEEEEcCCcCHHHHHHHHHHHhcCC---CCCCcCCHHHHHHhCCCCCHHHHHHHHHHHHHHHHHc
Confidence 99999999999999999999999999999999999875 4567899999999999999999999998887766654
No 6
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.2e-46 Score=432.28 Aligned_cols=257 Identities=29% Similarity=0.472 Sum_probs=229.7
Q ss_pred cccCCCCCCCCcccCcHHHHHHHHHHHHh-hcChhHHHhcCCCCCceeEecCCCCCChHHHHHHHHHHcCCCEEEeechh
Q 035561 445 KRVKNPPIPLKDFASVESMREEINEVVAF-LQNPSAFQEMGARAPRGVLIVGERGTGKTSLALAIAAEARVPVVNVEAQE 523 (979)
Q Consensus 445 ~~v~~~~~~f~DIvGleevke~L~eiV~~-L~~p~~f~~lG~~~P~gVLL~GPPGTGKTtLArAlA~elg~~~i~Is~sd 523 (979)
...+.|+++|+||+|++++|++|++.+.. +++|+.|..+|+++|+|||||||||||||++|+|+|++++.+|+.+++++
T Consensus 171 ~~~~~p~~t~~digGl~~~k~~l~e~v~~pl~~pe~f~~~g~~~prGvLLyGPPGTGKTllAkAiA~e~~~~f~~v~~s~ 250 (434)
T 4b4t_M 171 EVDEKPTETYSDVGGLDKQIEELVEAIVLPMKRADKFKDMGIRAPKGALMYGPPGTGKTLLARACAAQTNATFLKLAAPQ 250 (434)
T ss_dssp EEESSCSCCGGGSCSCHHHHHHHHHHTHHHHHCSHHHHHHCCCCCCEEEEESCTTSSHHHHHHHHHHHHTCEEEEEEGGG
T ss_pred ccCCCCCCChHhcCcHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCeeEEECcCCCCHHHHHHHHHHHhCCCEEEEehhh
Confidence 33467899999999999999999998776 99999999999999999999999999999999999999999999999999
Q ss_pred hhhhhhcccchhhHHHHHHHHHhcCCeEEEEcCccccccccccccCCCchhhHHHHHHHHhhhcccccCCeEEEEecccc
Q 035561 524 LEAGLWVGQSASNVRELFQTARDLAPVIIFVEDFDLFAGVRGQFIHTKQQDHESFINQLLVELDGFEKQDGVVLMATTRN 603 (979)
Q Consensus 524 L~~~~~vG~~~~~Ir~lF~~A~~~aP~ILfIDEIDaL~~~r~~~~~~~~~~~~~iln~LL~~LDg~~~~~~ViVIATTN~ 603 (979)
+. ++|+|++++.++.+|..|+.++||||||||+|+++++|+...+++.....+++++||.+||++...++|+||||||+
T Consensus 251 l~-~~~vGese~~ir~lF~~A~~~aP~IifiDEiDal~~~R~~~~~~~~~~~~~~~~~lL~~ldg~~~~~~ViVIaaTNr 329 (434)
T 4b4t_M 251 LV-QMYIGEGAKLVRDAFALAKEKAPTIIFIDELDAIGTKRFDSEKSGDREVQRTMLELLNQLDGFSSDDRVKVLAATNR 329 (434)
T ss_dssp GC-SSCSSHHHHHHHHHHHHHHHHCSEEEEEECTHHHHCCCSSGGGGTTHHHHHHHHHHHHHHTTSCSSCSSEEEEECSS
T ss_pred hh-hcccchHHHHHHHHHHHHHhcCCeEEeecchhhhhhccCCCCCCCchHHHHHHHHHHHHhhccCCCCCEEEEEeCCC
Confidence 98 78999999999999999999999999999999999998765555566778899999999999999899999999999
Q ss_pred hhhchhhhhcCCceeeEeccCCCCHHHHHHHHHHHHHhccchhhhhhhhHHHHHHHcCCCCHHHHHHHHHHHhhhhhccC
Q 035561 604 IKQIDEALQRPGRMDRIFNLQKPTQSEREKILRIAAQETMDEELIDLVDWRKVAEKTALLRPIELKLVPVALEGSAFRSK 683 (979)
Q Consensus 604 pe~LDpALlRpgRFd~~I~~~~Pd~eeR~~IL~~~l~~~~~~~l~~dvdL~~LA~~T~GfsgaDL~~Lv~aa~~aa~r~~ 683 (979)
|+.|||||+||||||+.|+|+.||.++|.+||+.|+++. ...+++|+..||+.|+||||+||.++|+.+...++++.
T Consensus 330 p~~LD~AllRpGRfD~~I~i~lPd~~~R~~Il~~~~~~~---~~~~dvdl~~lA~~t~G~sGADi~~l~~eA~~~a~r~~ 406 (434)
T 4b4t_M 330 VDVLDPALLRSGRLDRKIEFPLPSEDSRAQILQIHSRKM---TTDDDINWQELARSTDEFNGAQLKAVTVEAGMIALRNG 406 (434)
T ss_dssp CCCCCTTTCSTTSEEEEEECCCCCHHHHHHHHHHHHHHS---CBCSCCCHHHHHHHCSSCCHHHHHHHHHHHHHHHHHHT
T ss_pred chhcCHhHhcCCceeEEEEeCCcCHHHHHHHHHHHhcCC---CCCCcCCHHHHHHhCCCCCHHHHHHHHHHHHHHHHHcC
Confidence 999999999999999999999999999999999999876 45678999999999999999999999988877776653
Q ss_pred CCChHHHhhhcchhhhccCCCccccc
Q 035561 684 FLDTDELMSYCGWFATFSGVVPKWFR 709 (979)
Q Consensus 684 ~~s~~ei~~~~d~~aAl~~~~P~~lR 709 (979)
.. ..+..||..|++.++|+..+
T Consensus 407 ~~----~i~~~Df~~Al~~v~~~~~~ 428 (434)
T 4b4t_M 407 QS----SVKHEDFVEGISEVQARKSK 428 (434)
T ss_dssp CS----SBCHHHHHHHHHSCSSSCCC
T ss_pred CC----CcCHHHHHHHHHHHhCCCCc
Confidence 21 13445666666666664433
No 7
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2.6e-46 Score=429.56 Aligned_cols=231 Identities=29% Similarity=0.456 Sum_probs=215.0
Q ss_pred ccCCCCCCCCcccCcHHHHHHHHHHHHh-hcChhHHHhcCCCCCceeEecCCCCCChHHHHHHHHHHcCCCEEEeechhh
Q 035561 446 RVKNPPIPLKDFASVESMREEINEVVAF-LQNPSAFQEMGARAPRGVLIVGERGTGKTSLALAIAAEARVPVVNVEAQEL 524 (979)
Q Consensus 446 ~v~~~~~~f~DIvGleevke~L~eiV~~-L~~p~~f~~lG~~~P~gVLL~GPPGTGKTtLArAlA~elg~~~i~Is~sdL 524 (979)
..+.|+++|+||+|++++|++|++.|.+ +++|+.|..+|+++|+|||||||||||||++|+|+|++++.+|+.++++++
T Consensus 200 v~e~P~vt~~DIgGl~~~k~~L~e~V~~pl~~pe~f~~~Gi~pprGILLyGPPGTGKTlLAkAiA~e~~~~fi~vs~s~L 279 (467)
T 4b4t_H 200 VEEKPDVTYSDVGGCKDQIEKLREVVELPLLSPERFATLGIDPPKGILLYGPPGTGKTLCARAVANRTDATFIRVIGSEL 279 (467)
T ss_dssp EESSCSCCCSSCTTCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCSEEEECSCTTSSHHHHHHHHHHHHTCEEEEEEGGGG
T ss_pred ecCCCCCCHHHhccHHHHHHHHHHHHHHHhcCHHHHHHCCCCCCCceEeeCCCCCcHHHHHHHHHhccCCCeEEEEhHHh
Confidence 3467899999999999999999999887 999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhcccchhhHHHHHHHHHhcCCeEEEEcCccccccccccccCCCchhhHHHHHHHHhhhcccccCCeEEEEecccch
Q 035561 525 EAGLWVGQSASNVRELFQTARDLAPVIIFVEDFDLFAGVRGQFIHTKQQDHESFINQLLVELDGFEKQDGVVLMATTRNI 604 (979)
Q Consensus 525 ~~~~~vG~~~~~Ir~lF~~A~~~aP~ILfIDEIDaL~~~r~~~~~~~~~~~~~iln~LL~~LDg~~~~~~ViVIATTN~p 604 (979)
. ++|+|++++.++.+|..|+.++||||||||+|+++++|+....+......++++++|.+||++...++|+||||||+|
T Consensus 280 ~-sk~vGesek~ir~lF~~Ar~~aP~IIfiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~~~~~ViVIaATNrp 358 (467)
T 4b4t_H 280 V-QKYVGEGARMVRELFEMARTKKACIIFFDEIDAVGGARFDDGAGGDNEVQRTMLELITQLDGFDPRGNIKVMFATNRP 358 (467)
T ss_dssp C-CCSSSHHHHHHHHHHHHHHHTCSEEEEEECCTTTSBCCSSSSCGGGGHHHHHHHHHHHHHHSSCCTTTEEEEEECSCT
T ss_pred h-cccCCHHHHHHHHHHHHHHhcCCceEeecccccccccccCcCCCccHHHHHHHHHHHHHhhccCCCCcEEEEeCCCCc
Confidence 8 789999999999999999999999999999999999987655555566778999999999999999999999999999
Q ss_pred hhchhhhhcCCceeeEeccCCCCHHHHHHHHHHHHHhccchhhhhhhhHHHHHHHcCCCCHHHHHHHHHHHhhhhh
Q 035561 605 KQIDEALQRPGRMDRIFNLQKPTQSEREKILRIAAQETMDEELIDLVDWRKVAEKTALLRPIELKLVPVALEGSAF 680 (979)
Q Consensus 605 e~LDpALlRpgRFd~~I~~~~Pd~eeR~~IL~~~l~~~~~~~l~~dvdL~~LA~~T~GfsgaDL~~Lv~aa~~aa~ 680 (979)
+.|||||+||||||+.|+|+.|+.++|.+||+.|+++. .+..++|+..||+.|+||||+||+++|+.+...++
T Consensus 359 d~LDpALlRpGRFD~~I~i~lPd~~~R~~Ilk~~l~~~---~l~~dvdl~~LA~~T~GfSGADI~~l~~eAa~~Ai 431 (467)
T 4b4t_H 359 NTLDPALLRPGRIDRKVEFSLPDLEGRANIFRIHSKSM---SVERGIRWELISRLCPNSTGAELRSVCTEAGMFAI 431 (467)
T ss_dssp TSBCHHHHSTTTCCEEECCCCCCHHHHHHHHHHHHTTS---CBCSSCCHHHHHHHCCSCCHHHHHHHHHHHHHHHH
T ss_pred ccCChhhhccccccEEEEeCCcCHHHHHHHHHHHhcCC---CCCCCCCHHHHHHHCCCCCHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999876 45678999999999999999999999987655444
No 8
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=3.6e-46 Score=428.50 Aligned_cols=234 Identities=26% Similarity=0.453 Sum_probs=217.9
Q ss_pred cccCCCCCCCCcccCcHHHHHHHHHHHHh-hcChhHHHhcCCCCCceeEecCCCCCChHHHHHHHHHHcCCCEEEeechh
Q 035561 445 KRVKNPPIPLKDFASVESMREEINEVVAF-LQNPSAFQEMGARAPRGVLIVGERGTGKTSLALAIAAEARVPVVNVEAQE 523 (979)
Q Consensus 445 ~~v~~~~~~f~DIvGleevke~L~eiV~~-L~~p~~f~~lG~~~P~gVLL~GPPGTGKTtLArAlA~elg~~~i~Is~sd 523 (979)
...+.|+++|+||+|++++|++|++.+.+ +++|+.|..+|+++|+|+|||||||||||++|+|+|++++.+|+.+++++
T Consensus 171 ~~~~~p~v~~~digGl~~~k~~l~e~v~~pl~~p~~f~~~g~~~prGvLL~GPPGtGKTllAkAiA~e~~~~~~~v~~s~ 250 (437)
T 4b4t_L 171 TSFEQGEITFDGIGGLTEQIRELREVIELPLKNPEIFQRVGIKPPKGVLLYGPPGTGKTLLAKAVAATIGANFIFSPASG 250 (437)
T ss_dssp EEEESCSSCSGGGCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCCEEEEESCTTSSHHHHHHHHHHHHTCEEEEEEGGG
T ss_pred eeccCCCCChhHhCChHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCeEEEECCCCCcHHHHHHHHHHHhCCCEEEEehhh
Confidence 33467899999999999999999999988 99999999999999999999999999999999999999999999999999
Q ss_pred hhhhhhcccchhhHHHHHHHHHhcCCeEEEEcCccccccccccccCCCchhhHHHHHHHHhhhcccccCCeEEEEecccc
Q 035561 524 LEAGLWVGQSASNVRELFQTARDLAPVIIFVEDFDLFAGVRGQFIHTKQQDHESFINQLLVELDGFEKQDGVVLMATTRN 603 (979)
Q Consensus 524 L~~~~~vG~~~~~Ir~lF~~A~~~aP~ILfIDEIDaL~~~r~~~~~~~~~~~~~iln~LL~~LDg~~~~~~ViVIATTN~ 603 (979)
+. ++|+|+++..++.+|..|+.++||||||||+|+++++|+......+....+++++||.+||++...++|+||||||+
T Consensus 251 l~-sk~~Gese~~ir~~F~~A~~~~P~IifiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~~~~~vivI~ATNr 329 (437)
T 4b4t_L 251 IV-DKYIGESARIIREMFAYAKEHEPCIIFMDEVDAIGGRRFSEGTSADREIQRTLMELLTQMDGFDNLGQTKIIMATNR 329 (437)
T ss_dssp TC-CSSSSHHHHHHHHHHHHHHHSCSEEEEEECCCSSSCCCSSSCCSSTTHHHHHHHHHHHHHHSSSCTTSSEEEEEESS
T ss_pred hc-cccchHHHHHHHHHHHHHHhcCCceeeeecccccccccccCCCCcchHHHHHHHHHHHHhhcccCCCCeEEEEecCC
Confidence 98 78999999999999999999999999999999999998765555566678899999999999999899999999999
Q ss_pred hhhchhhhhcCCceeeEeccCCCCHHHHHHHHHHHHHhccchhhhhhhhHHHHHHHcCCCCHHHHHHHHHHHhhhhhcc
Q 035561 604 IKQIDEALQRPGRMDRIFNLQKPTQSEREKILRIAAQETMDEELIDLVDWRKVAEKTALLRPIELKLVPVALEGSAFRS 682 (979)
Q Consensus 604 pe~LDpALlRpgRFd~~I~~~~Pd~eeR~~IL~~~l~~~~~~~l~~dvdL~~LA~~T~GfsgaDL~~Lv~aa~~aa~r~ 682 (979)
|+.|||||+||||||+.|+||.||.++|.+||+.|+++. ....++|+..||+.|+||||+||.++|+.+...++++
T Consensus 330 p~~LDpAllRpGRfD~~I~i~lPd~~~R~~Il~~~~~~~---~~~~d~dl~~lA~~t~G~sGADi~~l~~eA~~~air~ 405 (437)
T 4b4t_L 330 PDTLDPALLRPGRLDRKVEIPLPNEAGRLEIFKIHTAKV---KKTGEFDFEAAVKMSDGFNGADIRNCATEAGFFAIRD 405 (437)
T ss_dssp TTSSCTTTTSTTSEEEEECCCCCCHHHHHHHHHHHHHTS---CBCSCCCHHHHHHTCCSCCHHHHHHHHHHHHHHHHHT
T ss_pred chhhCHHHhCCCccceeeecCCcCHHHHHHHHHHHhcCC---CCCcccCHHHHHHhCCCCCHHHHHHHHHHHHHHHHHc
Confidence 999999999999999999999999999999999999876 4567899999999999999999999998877666654
No 9
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=6.9e-45 Score=417.15 Aligned_cols=232 Identities=27% Similarity=0.460 Sum_probs=215.6
Q ss_pred ccCCCCCCCCcccCcHHHHHHHHHHHHh-hcChhHHHhcCCCCCceeEecCCCCCChHHHHHHHHHHcCCCEEEeechhh
Q 035561 446 RVKNPPIPLKDFASVESMREEINEVVAF-LQNPSAFQEMGARAPRGVLIVGERGTGKTSLALAIAAEARVPVVNVEAQEL 524 (979)
Q Consensus 446 ~v~~~~~~f~DIvGleevke~L~eiV~~-L~~p~~f~~lG~~~P~gVLL~GPPGTGKTtLArAlA~elg~~~i~Is~sdL 524 (979)
..+.|+++|+||+|++++|++|++.+.+ +++|+.|..+|+++|+|+|||||||||||++|+|+|++++.+|+.++++++
T Consensus 163 ~~~~p~v~~~digGl~~~k~~l~e~v~~pl~~p~~~~~~g~~~prGiLL~GPPGtGKT~lakAiA~~~~~~~~~v~~~~l 242 (428)
T 4b4t_K 163 ENEKPDVTYADVGGLDMQKQEIREAVELPLVQADLYEQIGIDPPRGVLLYGPPGTGKTMLVKAVANSTKAAFIRVNGSEF 242 (428)
T ss_dssp EESSCSCCGGGSCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCCEEEEESCTTTTHHHHHHHHHHHHTCEEEEEEGGGT
T ss_pred CCCCCCCCHHHhccHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCceEEEECCCCCCHHHHHHHHHHHhCCCeEEEecchh
Confidence 3467899999999999999999999887 999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhcccchhhHHHHHHHHHhcCCeEEEEcCccccccccccccCCCchhhHHHHHHHHhhhcccccCCeEEEEecccch
Q 035561 525 EAGLWVGQSASNVRELFQTARDLAPVIIFVEDFDLFAGVRGQFIHTKQQDHESFINQLLVELDGFEKQDGVVLMATTRNI 604 (979)
Q Consensus 525 ~~~~~vG~~~~~Ir~lF~~A~~~aP~ILfIDEIDaL~~~r~~~~~~~~~~~~~iln~LL~~LDg~~~~~~ViVIATTN~p 604 (979)
. ++|+|+++..++.+|..|+.++||||||||+|++++.|+.....++....+++++||++|||+....+|+||||||+|
T Consensus 243 ~-~~~~Ge~e~~ir~lF~~A~~~aP~IifiDEiD~i~~~R~~~~~~~~~~~~r~l~~lL~~ldg~~~~~~v~vI~aTN~~ 321 (428)
T 4b4t_K 243 V-HKYLGEGPRMVRDVFRLARENAPSIIFIDEVDSIATKRFDAQTGSDREVQRILIELLTQMDGFDQSTNVKVIMATNRA 321 (428)
T ss_dssp C-CSSCSHHHHHHHHHHHHHHHTCSEEEEEECTHHHHCSCSSSCSCCCCHHHHHHHHHHHHHHHSCSSCSEEEEEEESCS
T ss_pred h-ccccchhHHHHHHHHHHHHHcCCCeeechhhhhhhccccCCCCCCChHHHHHHHHHHHHhhCCCCCCCEEEEEecCCh
Confidence 8 789999999999999999999999999999999999987655566667789999999999999998999999999999
Q ss_pred hhchhhhhcCCceeeEeccC-CCCHHHHHHHHHHHHHhccchhhhhhhhHHHHHHHcCCCCHHHHHHHHHHHhhhhhc
Q 035561 605 KQIDEALQRPGRMDRIFNLQ-KPTQSEREKILRIAAQETMDEELIDLVDWRKVAEKTALLRPIELKLVPVALEGSAFR 681 (979)
Q Consensus 605 e~LDpALlRpgRFd~~I~~~-~Pd~eeR~~IL~~~l~~~~~~~l~~dvdL~~LA~~T~GfsgaDL~~Lv~aa~~aa~r 681 (979)
+.|||||+||||||+.|+|| .|+.++|..||+.++++. ...+++|+..||+.|+||||+||.++|+.+...+++
T Consensus 322 ~~LD~AllRpGRfd~~I~~p~lPd~~~R~~Il~~~~~~~---~l~~~~dl~~lA~~t~G~sgadi~~l~~eA~~~a~r 396 (428)
T 4b4t_K 322 DTLDPALLRPGRLDRKIEFPSLRDRRERRLIFGTIASKM---SLAPEADLDSLIIRNDSLSGAVIAAIMQEAGLRAVR 396 (428)
T ss_dssp SSCCHHHHSSSSEEEEEECCSSCCHHHHHHHHHHHHHSS---CBCTTCCHHHHHHHTTTCCHHHHHHHHHHHHHHHHH
T ss_pred hhcChhhhcCCcceEEEEcCCCCCHHHHHHHHHHHhcCC---CCCcccCHHHHHHHCCCCCHHHHHHHHHHHHHHHHH
Confidence 99999999999999999996 899999999999999875 456789999999999999999999999876655443
No 10
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=100.00 E-value=7.6e-46 Score=451.95 Aligned_cols=303 Identities=30% Similarity=0.424 Sum_probs=271.1
Q ss_pred CCCCCCCCcccCcHHHHHHHHHHHHh-hcChhHHHhcCCCCCceeEecCCCCCChHHHHHHHHHHcCCCEEEeechhhhh
Q 035561 448 KNPPIPLKDFASVESMREEINEVVAF-LQNPSAFQEMGARAPRGVLIVGERGTGKTSLALAIAAEARVPVVNVEAQELEA 526 (979)
Q Consensus 448 ~~~~~~f~DIvGleevke~L~eiV~~-L~~p~~f~~lG~~~P~gVLL~GPPGTGKTtLArAlA~elg~~~i~Is~sdL~~ 526 (979)
..+.++|+||+|+++++++|++.+.+ +++|+.|..+|+++|+|||||||||||||++|+++|++++.+++.++|+++.
T Consensus 197 ~~~~v~~~dIgGl~~~~~~l~e~v~~pl~~p~~f~~~g~~~p~GILL~GPPGTGKT~LAraiA~elg~~~~~v~~~~l~- 275 (806)
T 3cf2_A 197 SLNEVGYDDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANETGAFFFLINGPEIM- 275 (806)
T ss_dssp CSSSCCGGGCCSCCTTHHHHHHHHHHHHHCCGGGTSCCCCCCCEEEEECCTTSCHHHHHHHHHTTTTCEEEEEEHHHHH-
T ss_pred cCCCCChhhhcCHHHHHHHHHHHHHHHccCHHHHhhcCCCCCCeEEEECCCCCCHHHHHHHHHHHhCCeEEEEEhHHhh-
Confidence 35779999999999999999999988 9999999999999999999999999999999999999999999999999998
Q ss_pred hhhcccchhhHHHHHHHHHhcCCeEEEEcCccccccccccccCCCchhhHHHHHHHHhhhcccccCCeEEEEecccchhh
Q 035561 527 GLWVGQSASNVRELFQTARDLAPVIIFVEDFDLFAGVRGQFIHTKQQDHESFINQLLVELDGFEKQDGVVLMATTRNIKQ 606 (979)
Q Consensus 527 ~~~vG~~~~~Ir~lF~~A~~~aP~ILfIDEIDaL~~~r~~~~~~~~~~~~~iln~LL~~LDg~~~~~~ViVIATTN~pe~ 606 (979)
++|.|+++..++.+|+.|+.++||||||||||+|+++|+. ..++...+++++||.+||++....+|+||||||+++.
T Consensus 276 sk~~gese~~lr~lF~~A~~~~PsIIfIDEiDal~~~r~~---~~~~~~~riv~~LL~~mdg~~~~~~V~VIaaTN~~d~ 352 (806)
T 3cf2_A 276 SKLAGESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREK---THGEVERRIVSQLLTLMDGLKQRAHVIVMAATNRPNS 352 (806)
T ss_dssp SSCTTHHHHHHHHHHHHHTTSCSEEEEEESGGGTCCTTTT---CCCTTHHHHHHHHHTHHHHCCGGGCEEEEEECSSTTT
T ss_pred cccchHHHHHHHHHHHHHHHcCCeEEEEehhcccccccCC---CCChHHHHHHHHHHHHHhcccccCCEEEEEecCChhh
Confidence 7899999999999999999999999999999999998864 2344567899999999999988889999999999999
Q ss_pred chhhhhcCCceeeEeccCCCCHHHHHHHHHHHHHhccchhhhhhhhHHHHHHHcCCCCHHHHHHHHHHHhhhhhccC---
Q 035561 607 IDEALQRPGRMDRIFNLQKPTQSEREKILRIAAQETMDEELIDLVDWRKVAEKTALLRPIELKLVPVALEGSAFRSK--- 683 (979)
Q Consensus 607 LDpALlRpgRFd~~I~~~~Pd~eeR~~IL~~~l~~~~~~~l~~dvdL~~LA~~T~GfsgaDL~~Lv~aa~~aa~r~~--- 683 (979)
|||+|+||||||++|+++.||.++|.+||+.++++. ...+++|+..||.+|+||+|+||.+||+.+...++++.
T Consensus 353 LD~ALrR~GRFd~~I~i~~Pd~~~R~~IL~~~l~~~---~~~~dvdl~~lA~~T~GfsgaDL~~Lv~eA~~~A~~r~~~~ 429 (806)
T 3cf2_A 353 IDPALRRFGRFDREVDIGIPDATGRLEILQIHTKNM---KLADDVDLEQVANETHGHVGADLAALCSEAALQAIRKKMDL 429 (806)
T ss_dssp SCTTTTSTTSSCEEEECCCCCHHHHHHHHHHTCSSS---EECTTCCHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cCHHHhCCcccceEEecCCCCHHHHHHHHHHHhcCC---CCCcccCHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhcccc
Confidence 999999999999999999999999999999998875 55678999999999999999999999988776665542
Q ss_pred ------CCChHH----HhhhcchhhhccCCCccccccchhhhhhhhhhhhhcCccccHHHHHHHHHhhhcccc-------
Q 035561 684 ------FLDTDE----LMSYCGWFATFSGVVPKWFRKTKIVKKISRMLVDHLGLTLTKEDLQNVVDLMEPYGQ------- 746 (979)
Q Consensus 684 ------~~s~~e----i~~~~d~~aAl~~~~P~~lR~~~llk~~~v~w~DiGGl~vtkedL~eAIe~~~kyg~------- 746 (979)
....+. ..+..||..|++.++|+.+|.. .+..|++.|.|+||+...++.|++++++|.++..
T Consensus 430 i~~~~~~~~~e~~~~~~v~~~Df~~Al~~~~ps~~r~~-~~~~p~v~w~diggl~~~k~~l~e~v~~p~~~p~~f~~~g~ 508 (806)
T 3cf2_A 430 IDLEDETIDAEVMNSLAVTMDDFRWALSQSNPSALRET-VVEVPQVTWEDIGGLEDVKRELQELVQYPVEHPDKFLKFGM 508 (806)
T ss_dssp GGGTCCCCSHHHHHHCEECTTHHHHHHSSSSCCCCCCC-CCBCCCCCSTTCCSCHHHHHHHTTTTTTTTTCSGGGSSSCC
T ss_pred ccccccccchhhhccceeeHHHHHHHHHhCCCcccccc-cccCCCCCHHHhCCHHHHHHHHHHHHHhhhhCHHHHHhcCC
Confidence 111111 1345699999999999999987 4778999999999999999999999999876543
Q ss_pred -ccccccccCCCC
Q 035561 747 -ISNGIELLTPPL 758 (979)
Q Consensus 747 -i~aG~e~~sp~l 758 (979)
...|+.+++||.
T Consensus 509 ~~~~gvLl~GPPG 521 (806)
T 3cf2_A 509 TPSKGVLFYGPPG 521 (806)
T ss_dssp CCCSCCEEESSTT
T ss_pred CCCceEEEecCCC
Confidence 356788888888
No 11
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=100.00 E-value=7.6e-43 Score=425.61 Aligned_cols=232 Identities=31% Similarity=0.543 Sum_probs=184.8
Q ss_pred cCCCCCCCCcccCcHHHHHHHHHHHHh-hcChhHHHhcCCCCCceeEecCCCCCChHHHHHHHHHHcCCCEEEeechhhh
Q 035561 447 VKNPPIPLKDFASVESMREEINEVVAF-LQNPSAFQEMGARAPRGVLIVGERGTGKTSLALAIAAEARVPVVNVEAQELE 525 (979)
Q Consensus 447 v~~~~~~f~DIvGleevke~L~eiV~~-L~~p~~f~~lG~~~P~gVLL~GPPGTGKTtLArAlA~elg~~~i~Is~sdL~ 525 (979)
...|+++|+|++|++++|+.|++.+.+ +++|..|..+|.++|+|+|||||||||||++|+++|++++.+|+.+++++++
T Consensus 469 ~~~p~v~w~diggl~~~k~~l~e~v~~p~~~p~~f~~~g~~~~~gvLl~GPPGtGKT~lAkaiA~e~~~~f~~v~~~~l~ 548 (806)
T 3cf2_A 469 VEVPQVTWEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQANFISIKGPELL 548 (806)
T ss_dssp CBCCCCCSTTCCSCHHHHHHHTTTTTTTTTCSGGGSSSCCCCCSCCEEESSTTSSHHHHHHHHHHTTTCEEEECCHHHHH
T ss_pred ccCCCCCHHHhCCHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCceEEEecCCCCCchHHHHHHHHHhCCceEEeccchhh
Confidence 356889999999999999999999988 8999999999999999999999999999999999999999999999999998
Q ss_pred hhhhcccchhhHHHHHHHHHhcCCeEEEEcCccccccccccccCCCchhhHHHHHHHHhhhcccccCCeEEEEecccchh
Q 035561 526 AGLWVGQSASNVRELFQTARDLAPVIIFVEDFDLFAGVRGQFIHTKQQDHESFINQLLVELDGFEKQDGVVLMATTRNIK 605 (979)
Q Consensus 526 ~~~~vG~~~~~Ir~lF~~A~~~aP~ILfIDEIDaL~~~r~~~~~~~~~~~~~iln~LL~~LDg~~~~~~ViVIATTN~pe 605 (979)
++|+|++++.++.+|+.|+..+||||||||||+++++|+...+.++....+++++||.+||++....+|+||||||+|+
T Consensus 549 -s~~vGese~~vr~lF~~Ar~~~P~IifiDEiDsl~~~R~~~~~~~~~~~~rv~~~lL~~mdg~~~~~~V~vi~aTN~p~ 627 (806)
T 3cf2_A 549 -TMWFGESEANVREIFDKARQAAPCVLFFDELDSIAKARGGNIGDGGGAADRVINQILTEMDGMSTKKNVFIIGATNRPD 627 (806)
T ss_dssp -TTTCSSCHHHHHHHHHHHHTTCSEEEECSCGGGCC--------------CHHHHHHHHHHHSSCSSSSEEEECC-CCSS
T ss_pred -ccccchHHHHHHHHHHHHHHcCCceeechhhhHHhhccCCCCCCCchHHHHHHHHHHHHHhCCCCCCCEEEEEeCCCch
Confidence 7899999999999999999999999999999999999875444455667799999999999999989999999999999
Q ss_pred hchhhhhcCCceeeEeccCCCCHHHHHHHHHHHHHhccchhhhhhhhHHHHHHHcCCCCHHHHHHHHHHHhhhhhcc
Q 035561 606 QIDEALQRPGRMDRIFNLQKPTQSEREKILRIAAQETMDEELIDLVDWRKVAEKTALLRPIELKLVPVALEGSAFRS 682 (979)
Q Consensus 606 ~LDpALlRpgRFd~~I~~~~Pd~eeR~~IL~~~l~~~~~~~l~~dvdL~~LA~~T~GfsgaDL~~Lv~aa~~aa~r~ 682 (979)
.||||++||||||+.|+|+.||.++|.+||+.++++. +...++|+..||+.|+||||+||.++|+.+...++++
T Consensus 628 ~lD~AllRpgRfd~~i~v~lPd~~~R~~il~~~l~~~---~~~~~~dl~~la~~t~g~SGadi~~l~~~A~~~a~r~ 701 (806)
T 3cf2_A 628 IIDPAILRPGRLDQLIYIPLPDEKSRVAILKANLRKS---PVAKDVDLEFLAKMTNGFSGADLTEICQRACKLAIRE 701 (806)
T ss_dssp SSCHHHHSTTTSCCEEEC-----CHHHHTTTTTSSCC-----CCC----------------CHHHHHHHHHHHHHHH
T ss_pred hCCHhHcCCCcceEEEEECCcCHHHHHHHHHHHhcCC---CCCCCCCHHHHHHhCCCCCHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999765 5667899999999999999999999999888877764
No 12
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=100.00 E-value=1.8e-36 Score=328.87 Aligned_cols=231 Identities=31% Similarity=0.502 Sum_probs=193.2
Q ss_pred CCCCCCCCcccCcHHHHHHHHHHHH-hhcChhHHHhcCCCCCceeEecCCCCCChHHHHHHHHHHcCCCEEEeechhhhh
Q 035561 448 KNPPIPLKDFASVESMREEINEVVA-FLQNPSAFQEMGARAPRGVLIVGERGTGKTSLALAIAAEARVPVVNVEAQELEA 526 (979)
Q Consensus 448 ~~~~~~f~DIvGleevke~L~eiV~-~L~~p~~f~~lG~~~P~gVLL~GPPGTGKTtLArAlA~elg~~~i~Is~sdL~~ 526 (979)
..|+++|+||+|++++|+.|++.+. .+.++..+..+++..|+|++|+||||||||++++++|++++.+++.++++++.
T Consensus 3 ~~~~~~~~di~g~~~~~~~l~~~i~~~~~~~~~l~~~~l~~~~GvlL~Gp~GtGKTtLakala~~~~~~~i~i~g~~l~- 81 (274)
T 2x8a_A 3 TVPNVTWADIGALEDIREELTMAILAPVRNPDQFKALGLVTPAGVLLAGPPGCGKTLLAKAVANESGLNFISVKGPELL- 81 (274)
T ss_dssp ---------CCHHHHHHHHHHHHHTHHHHSHHHHHHTTCCCCSEEEEESSTTSCHHHHHHHHHHHTTCEEEEEETTTTC-
T ss_pred CCCCCCHHHhCCHHHHHHHHHHHHHHHhhCHHHHHHcCCCCCCeEEEECCCCCcHHHHHHHHHHHcCCCEEEEEcHHHH-
Confidence 4578999999999999999998654 59999999999999999999999999999999999999999999999999987
Q ss_pred hhhcccchhhHHHHHHHHHhcCCeEEEEcCccccccccccccCCCchhhHHHHHHHHhhhcccccCCeEEEEecccchhh
Q 035561 527 GLWVGQSASNVRELFQTARDLAPVIIFVEDFDLFAGVRGQFIHTKQQDHESFINQLLVELDGFEKQDGVVLMATTRNIKQ 606 (979)
Q Consensus 527 ~~~vG~~~~~Ir~lF~~A~~~aP~ILfIDEIDaL~~~r~~~~~~~~~~~~~iln~LL~~LDg~~~~~~ViVIATTN~pe~ 606 (979)
+.+.|..+..++.+|+.++...||++|+||+|.+++.++.. ......+.+++++.+|++......++++|+||+|+.
T Consensus 82 ~~~~~~~~~~i~~vf~~a~~~~p~i~~~Deid~~~~~r~~~---~~~~~~~~~~~~l~~Lsgg~~~~~~i~ia~tn~p~~ 158 (274)
T 2x8a_A 82 NMYVGESERAVRQVFQRAKNSAPCVIFFDEVDALCPRRSDR---ETGASVRVVNQLLTEMDGLEARQQVFIMAATNRPDI 158 (274)
T ss_dssp SSTTHHHHHHHHHHHHHHHHTCSEEEEEETCTTTCC------------CTTHHHHHHHHHHTCCSTTCEEEEEEESCGGG
T ss_pred hhhhhHHHHHHHHHHHHHHhcCCCeEeeehhhhhhcccCCC---cchHHHHHHHHHHHhhhcccccCCEEEEeecCChhh
Confidence 66788889999999999988899999999999988765421 122345678999999999988889999999999999
Q ss_pred chhhhhcCCceeeEeccCCCCHHHHHHHHHHHHHhccchhhhhhhhHHHHHHHc--CCCCHHHHHHHHHHHhhhhhcc
Q 035561 607 IDEALQRPGRMDRIFNLQKPTQSEREKILRIAAQETMDEELIDLVDWRKVAEKT--ALLRPIELKLVPVALEGSAFRS 682 (979)
Q Consensus 607 LDpALlRpgRFd~~I~~~~Pd~eeR~~IL~~~l~~~~~~~l~~dvdL~~LA~~T--~GfsgaDL~~Lv~aa~~aa~r~ 682 (979)
||++++||||||+.|+++.|+.++|.+||+.++++........++|+..+|..| +||||+||.++|+.+...++++
T Consensus 159 LD~al~r~gRfd~~i~~~~P~~~~r~~il~~~~~~~~~~~~~~~~~~~~la~~~~~~g~sgadl~~l~~~a~~~a~~~ 236 (274)
T 2x8a_A 159 IDPAILRPGRLDKTLFVGLPPPADRLAILKTITKNGTKPPLDADVNLEAIAGDLRCDCYTGADLSALVREASICALRQ 236 (274)
T ss_dssp SCHHHHSTTSSCEEEECCSCCHHHHHHHHHHHTTTTBTTBBCTTCCHHHHHTCSGGGSCCHHHHHHHHHHHHHHHHHH
T ss_pred CCHhhcCcccCCeEEEeCCcCHHHHHHHHHHHHhcccCCCCccccCHHHHHHhhccCCcCHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999998753323456789999999874 5999999999998887766654
No 13
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=100.00 E-value=4e-36 Score=329.04 Aligned_cols=231 Identities=31% Similarity=0.541 Sum_probs=208.0
Q ss_pred CCCCCCCCcccCcHHHHHHHHHHHHh-hcChhHHHhcCCCCCceeEecCCCCCChHHHHHHHHHHcCCCEEEeechhhhh
Q 035561 448 KNPPIPLKDFASVESMREEINEVVAF-LQNPSAFQEMGARAPRGVLIVGERGTGKTSLALAIAAEARVPVVNVEAQELEA 526 (979)
Q Consensus 448 ~~~~~~f~DIvGleevke~L~eiV~~-L~~p~~f~~lG~~~P~gVLL~GPPGTGKTtLArAlA~elg~~~i~Is~sdL~~ 526 (979)
..|+++|+||+|++++++.|++.+.. +.+|+.|..+|+++++++||+||||||||++|+++|++++.+++.++|+++.
T Consensus 8 ~~~~~~~~di~G~~~~~~~l~~~v~~~~~~~~~~~~~~~~~~~~vLL~Gp~GtGKT~la~ala~~~~~~~i~v~~~~l~- 86 (301)
T 3cf0_A 8 EVPQVTWEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQANFISIKGPELL- 86 (301)
T ss_dssp ECCCCCGGGSCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCSEEEEECSSSSSHHHHHHHHHHHTTCEEEEECHHHHH-
T ss_pred cCCCCCHHHhCCHHHHHHHHHHHHHHHhhCHHHHHHcCCCCCceEEEECCCCcCHHHHHHHHHHHhCCCEEEEEhHHHH-
Confidence 46789999999999999999999887 8999999999999999999999999999999999999999999999999997
Q ss_pred hhhcccchhhHHHHHHHHHhcCCeEEEEcCccccccccccccCCCchhhHHHHHHHHhhhcccccCCeEEEEecccchhh
Q 035561 527 GLWVGQSASNVRELFQTARDLAPVIIFVEDFDLFAGVRGQFIHTKQQDHESFINQLLVELDGFEKQDGVVLMATTRNIKQ 606 (979)
Q Consensus 527 ~~~vG~~~~~Ir~lF~~A~~~aP~ILfIDEIDaL~~~r~~~~~~~~~~~~~iln~LL~~LDg~~~~~~ViVIATTN~pe~ 606 (979)
+.+.|..+..++.+|..|....||||||||+|.+++.++...+.......+++++||..|+++....+++||+|||+++.
T Consensus 87 ~~~~g~~~~~~~~~f~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~~~~~~~~lL~~l~~~~~~~~v~vi~atn~~~~ 166 (301)
T 3cf0_A 87 TMWFGESEANVREIFDKARQAAPCVLFFDELDSIAKARGGNIGDGGGAADRVINQILTEMDGMSTKKNVFIIGATNRPDI 166 (301)
T ss_dssp HHHHTTCTTHHHHHHHHHHHTCSEEEEECSTTHHHHHHTTTTCCSSCSCCHHHHHHHHHHHSSCTTSSEEEEEEESCGGG
T ss_pred hhhcCchHHHHHHHHHHHHhcCCeEEEEEChHHHhhccCCCcCCcchHHHHHHHHHHHHhhcccCCCCEEEEEecCCccc
Confidence 67889999999999999999999999999999998876543223334456788999999999877788999999999999
Q ss_pred chhhhhcCCceeeEeccCCCCHHHHHHHHHHHHHhccchhhhhhhhHHHHHHHcCCCCHHHHHHHHHHHhhhhhcc
Q 035561 607 IDEALQRPGRMDRIFNLQKPTQSEREKILRIAAQETMDEELIDLVDWRKVAEKTALLRPIELKLVPVALEGSAFRS 682 (979)
Q Consensus 607 LDpALlRpgRFd~~I~~~~Pd~eeR~~IL~~~l~~~~~~~l~~dvdL~~LA~~T~GfsgaDL~~Lv~aa~~aa~r~ 682 (979)
||++++|||||+..++++.|+.++|.+|++.++++. ....++++..+|..|.||+|+||.++|+.+...+.++
T Consensus 167 ld~al~r~gRf~~~i~i~~p~~~~r~~il~~~l~~~---~~~~~~~~~~la~~~~g~sg~dl~~l~~~a~~~a~~~ 239 (301)
T 3cf0_A 167 IDPAILRPGRLDQLIYIPLPDEKSRVAILKANLRKS---PVAKDVDLEFLAKMTNGFSGADLTEICQRACKLAIRE 239 (301)
T ss_dssp SCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHHTTS---CBCSSCCHHHHHHTCSSCCHHHHHHHHHHHHHHHHHH
T ss_pred cChHHhcCCccceEEecCCcCHHHHHHHHHHHHccC---CCCccchHHHHHHHcCCCCHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999865 3446789999999999999999999998877766543
No 14
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=100.00 E-value=9.3e-36 Score=347.71 Aligned_cols=272 Identities=30% Similarity=0.431 Sum_probs=228.1
Q ss_pred CCCCCCcccCcHHHHHHHHHHHHh-hcChhHHHhcCCCCCceeEecCCCCCChHHHHHHHHHHcCCCEEEeechhhhhhh
Q 035561 450 PPIPLKDFASVESMREEINEVVAF-LQNPSAFQEMGARAPRGVLIVGERGTGKTSLALAIAAEARVPVVNVEAQELEAGL 528 (979)
Q Consensus 450 ~~~~f~DIvGleevke~L~eiV~~-L~~p~~f~~lG~~~P~gVLL~GPPGTGKTtLArAlA~elg~~~i~Is~sdL~~~~ 528 (979)
++++|++|+|++++++.|++.+.. +.+|..|..+|.+.|.++||+||||||||++|+++|++++.+|+.++|+++. +.
T Consensus 199 ~~~~~~~i~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLL~GppGtGKT~lAraia~~~~~~fv~vn~~~l~-~~ 277 (489)
T 3hu3_A 199 NEVGYDDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANETGAFFFLINGPEIM-SK 277 (489)
T ss_dssp TCCCGGGCCSCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCCEEEEECSTTSSHHHHHHHHHHHCSSEEEEEEHHHHH-TS
T ss_pred CCCCHHHcCCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCcEEEECcCCCCHHHHHHHHHHHhCCCEEEEEchHhh-hh
Confidence 457899999999999999999887 8999999999999999999999999999999999999999999999999998 66
Q ss_pred hcccchhhHHHHHHHHHhcCCeEEEEcCccccccccccccCCCchhhHHHHHHHHhhhcccccCCeEEEEecccchhhch
Q 035561 529 WVGQSASNVRELFQTARDLAPVIIFVEDFDLFAGVRGQFIHTKQQDHESFINQLLVELDGFEKQDGVVLMATTRNIKQID 608 (979)
Q Consensus 529 ~vG~~~~~Ir~lF~~A~~~aP~ILfIDEIDaL~~~r~~~~~~~~~~~~~iln~LL~~LDg~~~~~~ViVIATTN~pe~LD 608 (979)
+.|.....++.+|..|...+||||||||||.++++++. .......+++++|+..|++......++||+|||+++.||
T Consensus 278 ~~g~~~~~~~~~f~~A~~~~p~iLfLDEId~l~~~~~~---~~~~~~~~~~~~LL~~ld~~~~~~~v~vIaaTn~~~~Ld 354 (489)
T 3hu3_A 278 LAGESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREK---THGEVERRIVSQLLTLMDGLKQRAHVIVMAATNRPNSID 354 (489)
T ss_dssp CTTHHHHHHHHHHHHHHHTCSEEEEEESHHHHCBCTTS---CCCHHHHHHHHHHHHHHHHSCTTSCEEEEEEESCGGGBC
T ss_pred hcchhHHHHHHHHHHHHhcCCcEEEecchhhhcccccc---ccchHHHHHHHHHHHHhhccccCCceEEEEecCCccccC
Confidence 88999999999999999999999999999999887653 233455688899999999988888999999999999999
Q ss_pred hhhhcCCceeeEeccCCCCHHHHHHHHHHHHHhccchhhhhhhhHHHHHHHcCCCCHHHHHHHHHHHhhhhhccCCC---
Q 035561 609 EALQRPGRMDRIFNLQKPTQSEREKILRIAAQETMDEELIDLVDWRKVAEKTALLRPIELKLVPVALEGSAFRSKFL--- 685 (979)
Q Consensus 609 pALlRpgRFd~~I~~~~Pd~eeR~~IL~~~l~~~~~~~l~~dvdL~~LA~~T~GfsgaDL~~Lv~aa~~aa~r~~~~--- 685 (979)
++++|+|||+..++++.|+.++|.+||+.+++.. ....++++..+|..|.||+++||.+||+.+...+.++...
T Consensus 355 ~al~r~gRf~~~i~i~~P~~~eR~~IL~~~~~~~---~l~~~~~l~~la~~t~g~s~~dL~~L~~~A~~~a~r~~~~~i~ 431 (489)
T 3hu3_A 355 PALRRFGRFDREVDIGIPDATGRLEILQIHTKNM---KLADDVDLEQVANETHGHVGADLAALCSEAALQAIRKKMDLID 431 (489)
T ss_dssp GGGGSTTSSCEEEECCCCCHHHHHHHHHHHTTTS---CBCTTCCHHHHHHTCTTCCHHHHHHHHHHHHHHHHHTTTTTCC
T ss_pred HHHhCCCcCceEEEeCCCCHHHHHHHHHHHHhcC---CCcchhhHHHHHHHccCCcHHHHHHHHHHHHHHHHHhcccccc
Confidence 9999999999999999999999999999998765 4456788999999999999999999998887777665321
Q ss_pred ------ChHH----HhhhcchhhhccCCCccccccchhhhhhhhhhhhhcCccc
Q 035561 686 ------DTDE----LMSYCGWFATFSGVVPKWFRKTKIVKKISRMLVDHLGLTL 729 (979)
Q Consensus 686 ------s~~e----i~~~~d~~aAl~~~~P~~lR~~~llk~~~v~w~DiGGl~v 729 (979)
.... ..+..+|..|++.+.|+.+|.+ .++.|++.|+|+||...
T Consensus 432 ~~~~~~~~~~~~~~~vt~edf~~Al~~~~ps~~re~-~~e~p~v~W~dig~~~~ 484 (489)
T 3hu3_A 432 LEDETIDAEVMNSLAVTMDDFRWALSQSNPSALRET-VVEVPQVTWEDIGGRSH 484 (489)
T ss_dssp TTCSSCCHHHHHHCCBCHHHHHHHHTSHHHHHHHGG-GC---------------
T ss_pred ccccccchhhcccCcCCHHHHHHHHHhCCchhhhcc-cccCCCCCHHHcCCCcc
Confidence 1111 2456799999999999999988 58899999999999864
No 15
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=100.00 E-value=7.6e-35 Score=322.61 Aligned_cols=226 Identities=26% Similarity=0.481 Sum_probs=200.9
Q ss_pred CCCCCCCCcccCcHHHHHHHHHHHHh-hcChhHHHhcCCCCCceeEecCCCCCChHHHHHHHHHHc-CCCEEEeechhhh
Q 035561 448 KNPPIPLKDFASVESMREEINEVVAF-LQNPSAFQEMGARAPRGVLIVGERGTGKTSLALAIAAEA-RVPVVNVEAQELE 525 (979)
Q Consensus 448 ~~~~~~f~DIvGleevke~L~eiV~~-L~~p~~f~~lG~~~P~gVLL~GPPGTGKTtLArAlA~el-g~~~i~Is~sdL~ 525 (979)
+.|+++|+||+|++++|+.|++.+.+ +++|..|.. +..+|+|+|||||||||||++|+++|+++ +.+++.++++++.
T Consensus 5 ~~~~~~~~di~G~~~~k~~l~~~v~~p~~~~~~~~~-~~~~~~~iLL~GppGtGKT~la~ala~~~~~~~~~~i~~~~l~ 83 (322)
T 1xwi_A 5 ERPNVKWSDVAGLEGAKEALKEAVILPIKFPHLFTG-KRTPWRGILLFGPPGTGKSYLAKAVATEANNSTFFSISSSDLV 83 (322)
T ss_dssp ECCCCCGGGSCSCHHHHHHHHHHHHHHHHCGGGSCT-TCCCCSEEEEESSSSSCHHHHHHHHHHHTTSCEEEEEECCSSC
T ss_pred cCCCCCHHHhcCHHHHHHHHHHHHHHHHhCHHHHhC-CCCCCceEEEECCCCccHHHHHHHHHHHcCCCcEEEEEhHHHH
Confidence 56789999999999999999998876 888888763 35677999999999999999999999999 8999999999997
Q ss_pred hhhhcccchhhHHHHHHHHHhcCCeEEEEcCccccccccccccCCCchhhHHHHHHHHhhhcccc-cCCeEEEEecccch
Q 035561 526 AGLWVGQSASNVRELFQTARDLAPVIIFVEDFDLFAGVRGQFIHTKQQDHESFINQLLVELDGFE-KQDGVVLMATTRNI 604 (979)
Q Consensus 526 ~~~~vG~~~~~Ir~lF~~A~~~aP~ILfIDEIDaL~~~r~~~~~~~~~~~~~iln~LL~~LDg~~-~~~~ViVIATTN~p 604 (979)
+.+.|.++..++.+|..++..+||||||||+|.++++++. .......+++++|+..|+++. ...+++||+|||+|
T Consensus 84 -~~~~g~~~~~~~~lf~~a~~~~~~vl~iDEid~l~~~~~~---~~~~~~~~~~~~ll~~ld~~~~~~~~v~vI~atn~~ 159 (322)
T 1xwi_A 84 -SKWLGESEKLVKNLFQLARENKPSIIFIDEIDSLCGSRSE---NESEAARRIKTEFLVQMQGVGVDNDGILVLGATNIP 159 (322)
T ss_dssp -CSSCCSCHHHHHHHHHHHHHTSSEEEEEETTTGGGCCSSS---CCTTHHHHHHHHHHHHHHCSSSCCTTEEEEEEESCT
T ss_pred -hhhhhHHHHHHHHHHHHHHhcCCcEEEeecHHHhcccccc---ccchHHHHHHHHHHHHHhcccccCCCEEEEEecCCc
Confidence 6789999999999999999999999999999999887753 234456788999999999985 35789999999999
Q ss_pred hhchhhhhcCCceeeEeccCCCCHHHHHHHHHHHHHhccchhhhhhhhHHHHHHHcCCCCHHHHHHHHHHHhhhhhcc
Q 035561 605 KQIDEALQRPGRMDRIFNLQKPTQSEREKILRIAAQETMDEELIDLVDWRKVAEKTALLRPIELKLVPVALEGSAFRS 682 (979)
Q Consensus 605 e~LDpALlRpgRFd~~I~~~~Pd~eeR~~IL~~~l~~~~~~~l~~dvdL~~LA~~T~GfsgaDL~~Lv~aa~~aa~r~ 682 (979)
+.+|++++| ||+..++++.|+.++|.+|++.++++.. ...++.++..||+.|+||+|+||.++|+.+...++++
T Consensus 160 ~~ld~al~r--Rf~~~i~i~~P~~~~r~~il~~~l~~~~--~~l~~~~l~~la~~t~G~sgadl~~l~~~A~~~a~r~ 233 (322)
T 1xwi_A 160 WVLDSAIRR--RFEKRIYIPLPEPHARAAMFKLHLGTTQ--NSLTEADFRELGRKTDGYSGADISIIVRDALMQPVRK 233 (322)
T ss_dssp TTSCHHHHH--TCCEEEECCCCCHHHHHHHHHHHHTTCC--BCCCHHHHHHHHHTCTTCCHHHHHHHHHHHHTHHHHH
T ss_pred ccCCHHHHh--hcCeEEEeCCcCHHHHHHHHHHHHhcCC--CCCCHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHH
Confidence 999999999 9999999999999999999999997652 2236789999999999999999999998888777654
No 16
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=100.00 E-value=4.8e-34 Score=303.74 Aligned_cols=228 Identities=36% Similarity=0.586 Sum_probs=200.3
Q ss_pred CCCCCCCCcccCcHHHHHHHHHHHHhhcChhHHHhcCCCCCceeEecCCCCCChHHHHHHHHHHcCCCEEEeechhhhhh
Q 035561 448 KNPPIPLKDFASVESMREEINEVVAFLQNPSAFQEMGARAPRGVLIVGERGTGKTSLALAIAAEARVPVVNVEAQELEAG 527 (979)
Q Consensus 448 ~~~~~~f~DIvGleevke~L~eiV~~L~~p~~f~~lG~~~P~gVLL~GPPGTGKTtLArAlA~elg~~~i~Is~sdL~~~ 527 (979)
..++.+|+||+|++++++.|.+++.++.++..|..+|.+.|+++||+||||||||++|+++|++++.+++.++++++. +
T Consensus 5 ~~~~~~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~~~~~~~~i~~~~~~-~ 83 (257)
T 1lv7_A 5 DQIKTTFADVAGCDEAKEEVAELVEYLREPSRFQKLGGKIPKGVLMVGPPGTGKTLLAKAIAGEAKVPFFTISGSDFV-E 83 (257)
T ss_dssp CSSCCCGGGSCSCHHHHHHTHHHHHHHHCGGGC-----CCCCEEEEECCTTSCHHHHHHHHHHHHTCCEEEECSCSST-T
T ss_pred cCCCCCHHHhcCcHHHHHHHHHHHHHHhCHHHHHHcCCCCCCeEEEECcCCCCHHHHHHHHHHHcCCCEEEEeHHHHH-H
Confidence 567889999999999999999999999999999999999999999999999999999999999999999999999987 6
Q ss_pred hhcccchhhHHHHHHHHHhcCCeEEEEcCccccccccccccCCCchhhHHHHHHHHhhhcccccCCeEEEEecccchhhc
Q 035561 528 LWVGQSASNVRELFQTARDLAPVIIFVEDFDLFAGVRGQFIHTKQQDHESFINQLLVELDGFEKQDGVVLMATTRNIKQI 607 (979)
Q Consensus 528 ~~vG~~~~~Ir~lF~~A~~~aP~ILfIDEIDaL~~~r~~~~~~~~~~~~~iln~LL~~LDg~~~~~~ViVIATTN~pe~L 607 (979)
.+.|.+...++.+|+.+....||++||||+|.+.+.++....+......+.++.++..++++....+++||+|||+++.+
T Consensus 84 ~~~~~~~~~~~~~~~~a~~~~~~il~iDeid~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~vI~~tn~~~~l 163 (257)
T 1lv7_A 84 MFVGVGASRVRDMFEQAKKAAPCIIFIDEIDAVGRQRGAGLGGGHDEREQTLNQMLVEMDGFEGNEGIIVIAATNRPDVL 163 (257)
T ss_dssp SCCCCCHHHHHHHHHHHHTTCSEEEEETTHHHHTCCCSTTSCCTTCHHHHHHHHHHHHHHTCCSSSCEEEEEEESCTTTS
T ss_pred HhhhhhHHHHHHHHHHHHHcCCeeehhhhhhhhccCCCCCcCCCchHHHHHHHHHHHHhhCcccCCCEEEEEeeCCchhC
Confidence 67899999999999999998999999999999988765433334455567899999999998878889999999999999
Q ss_pred hhhhhcCCceeeEeccCCCCHHHHHHHHHHHHHhccchhhhhhhhHHHHHHHcCCCCHHHHHHHHHHHhhhh
Q 035561 608 DEALQRPGRMDRIFNLQKPTQSEREKILRIAAQETMDEELIDLVDWRKVAEKTALLRPIELKLVPVALEGSA 679 (979)
Q Consensus 608 DpALlRpgRFd~~I~~~~Pd~eeR~~IL~~~l~~~~~~~l~~dvdL~~LA~~T~GfsgaDL~~Lv~aa~~aa 679 (979)
|++++|+|||++.+.++.|+.++|.+|++.++++. ...+++++..+|..++||+++||.++|+.+...+
T Consensus 164 ~~~l~r~~rf~~~i~i~~P~~~~r~~il~~~~~~~---~l~~~~~~~~la~~~~G~~~~dl~~l~~~a~~~a 232 (257)
T 1lv7_A 164 DPALLRPGRFDRQVVVGLPDVRGREQILKVHMRRV---PLAPDIDAAIIARGTPGFSGADLANLVNEAALFA 232 (257)
T ss_dssp CGGGGSTTSSCEEEECCCCCHHHHHHHHHHHHTTS---CBCTTCCHHHHHHTCTTCCHHHHHHHHHHHHHHH
T ss_pred CHHHcCCCcCCeEEEeCCCCHHHHHHHHHHHHhcC---CCCccccHHHHHHHcCCCCHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999998764 4556788999999999999999999987655443
No 17
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=100.00 E-value=1.8e-34 Score=318.60 Aligned_cols=226 Identities=27% Similarity=0.495 Sum_probs=198.3
Q ss_pred CCCCCCCCcccCcHHHHHHHHHHHHh-hcChhHHHhcCCCCCceeEecCCCCCChHHHHHHHHHHcCCCEEEeechhhhh
Q 035561 448 KNPPIPLKDFASVESMREEINEVVAF-LQNPSAFQEMGARAPRGVLIVGERGTGKTSLALAIAAEARVPVVNVEAQELEA 526 (979)
Q Consensus 448 ~~~~~~f~DIvGleevke~L~eiV~~-L~~p~~f~~lG~~~P~gVLL~GPPGTGKTtLArAlA~elg~~~i~Is~sdL~~ 526 (979)
+.|+++|+||+|++++++.|++.+.+ +..|..|.. +..+++++|||||||||||++|+++|++++.+++.++++++.
T Consensus 11 ~~~~~~~~di~G~~~~~~~l~~~i~~~~~~~~~~~~-~~~~~~~vLl~GppGtGKT~la~aia~~~~~~~~~v~~~~l~- 88 (322)
T 3eie_A 11 EKPNVKWEDVAGLEGAKEALKEAVILPVKFPHLFKG-NRKPTSGILLYGPPGTGKSYLAKAVATEANSTFFSVSSSDLV- 88 (322)
T ss_dssp ECCCCCGGGSCSCHHHHHHHHHHTHHHHHCGGGCCT-TCCCCCEEEEECSSSSCHHHHHHHHHHHHTCEEEEEEHHHHH-
T ss_pred cCCCCCHHHhcChHHHHHHHHHHHHHHHhCHHHHhc-CCCCCCeEEEECCCCCcHHHHHHHHHHHHCCCEEEEchHHHh-
Confidence 67889999999999999999998876 778877765 556789999999999999999999999999999999999997
Q ss_pred hhhcccchhhHHHHHHHHHhcCCeEEEEcCccccccccccccCCCchhhHHHHHHHHhhhcccc-cCCeEEEEecccchh
Q 035561 527 GLWVGQSASNVRELFQTARDLAPVIIFVEDFDLFAGVRGQFIHTKQQDHESFINQLLVELDGFE-KQDGVVLMATTRNIK 605 (979)
Q Consensus 527 ~~~vG~~~~~Ir~lF~~A~~~aP~ILfIDEIDaL~~~r~~~~~~~~~~~~~iln~LL~~LDg~~-~~~~ViVIATTN~pe 605 (979)
+.+.|.++..++.+|..++..+|+||||||+|.+.+.++. ..+....++.++++..|+++. ...+++||+|||+++
T Consensus 89 ~~~~g~~~~~~~~~f~~a~~~~~~vl~iDEid~l~~~~~~---~~~~~~~~~~~~ll~~l~~~~~~~~~v~vi~atn~~~ 165 (322)
T 3eie_A 89 SKWMGESEKLVKQLFAMARENKPSIIFIDQVDALTGTRGE---GESEASRRIKTELLVQMNGVGNDSQGVLVLGATNIPW 165 (322)
T ss_dssp TTTGGGHHHHHHHHHHHHHHTSSEEEEEECGGGGSCC---------CCTHHHHHHHHHHHGGGGTSCCCEEEEEEESCGG
T ss_pred hcccchHHHHHHHHHHHHHhcCCeEEEechhhhhhccCCC---CcchHHHHHHHHHHHHhccccccCCceEEEEecCChh
Confidence 6789999999999999999999999999999999887653 233445778899999999884 456799999999999
Q ss_pred hchhhhhcCCceeeEeccCCCCHHHHHHHHHHHHHhccchhhhhhhhHHHHHHHcCCCCHHHHHHHHHHHhhhhhcc
Q 035561 606 QIDEALQRPGRMDRIFNLQKPTQSEREKILRIAAQETMDEELIDLVDWRKVAEKTALLRPIELKLVPVALEGSAFRS 682 (979)
Q Consensus 606 ~LDpALlRpgRFd~~I~~~~Pd~eeR~~IL~~~l~~~~~~~l~~dvdL~~LA~~T~GfsgaDL~~Lv~aa~~aa~r~ 682 (979)
.||++++| ||+..++++.|+.++|.+|++.++++.. ...++.++..||+.|+||+|+||.++|+.+...++++
T Consensus 166 ~ld~al~~--Rf~~~i~~~~p~~~~r~~il~~~~~~~~--~~~~~~~l~~la~~t~g~sg~di~~l~~~a~~~a~r~ 238 (322)
T 3eie_A 166 QLDSAIRR--RFERRIYIPLPDLAARTTMFEINVGDTP--CVLTKEDYRTLGAMTEGYSGSDIAVVVKDALMQPIRK 238 (322)
T ss_dssp GSCHHHHH--HCCEEEECCCCCHHHHHHHHHHHHTTCC--CCCCHHHHHHHHHTTTTCCHHHHHHHHHHHTTHHHHH
T ss_pred hCCHHHHc--ccCeEEEeCCCCHHHHHHHHHHHhccCC--CCCCHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHH
Confidence 99999999 9999999999999999999999998652 2346779999999999999999999998887777664
No 18
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=100.00 E-value=4.9e-34 Score=320.14 Aligned_cols=230 Identities=27% Similarity=0.483 Sum_probs=192.2
Q ss_pred hcccCCCCCCCCcccCcHHHHHHHHHHHHh-hcChhHHHhcCCCCCceeEecCCCCCChHHHHHHHHHHcCCCEEEeech
Q 035561 444 MKRVKNPPIPLKDFASVESMREEINEVVAF-LQNPSAFQEMGARAPRGVLIVGERGTGKTSLALAIAAEARVPVVNVEAQ 522 (979)
Q Consensus 444 l~~v~~~~~~f~DIvGleevke~L~eiV~~-L~~p~~f~~lG~~~P~gVLL~GPPGTGKTtLArAlA~elg~~~i~Is~s 522 (979)
......++++|+||+|++++++.|++.+.. +..|..|.. +..+++++|||||||||||++|+++|++++.+++.++++
T Consensus 40 ~~~~~~~~~~~~di~G~~~~~~~l~~~v~~~~~~~~~~~~-~~~~~~~iLL~GppGtGKT~la~ala~~~~~~~~~v~~~ 118 (355)
T 2qp9_X 40 AILSEKPNVKWEDVAGLEGAKEALKEAVILPVKFPHLFKG-NRKPTSGILLYGPPGTGKSYLAKAVATEANSTFFSVSSS 118 (355)
T ss_dssp -------CCCGGGSCCGGGHHHHHHHHTHHHHHCGGGGCS-SCCCCCCEEEECSTTSCHHHHHHHHHHHHTCEEEEEEHH
T ss_pred hhcccCCCCCHHHhCCHHHHHHHHHHHHHHHHhCHHHHhc-CCCCCceEEEECCCCCcHHHHHHHHHHHhCCCEEEeeHH
Confidence 344467889999999999999999998876 788888875 667789999999999999999999999999999999999
Q ss_pred hhhhhhhcccchhhHHHHHHHHHhcCCeEEEEcCccccccccccccCCCchhhHHHHHHHHhhhccccc-CCeEEEEecc
Q 035561 523 ELEAGLWVGQSASNVRELFQTARDLAPVIIFVEDFDLFAGVRGQFIHTKQQDHESFINQLLVELDGFEK-QDGVVLMATT 601 (979)
Q Consensus 523 dL~~~~~vG~~~~~Ir~lF~~A~~~aP~ILfIDEIDaL~~~r~~~~~~~~~~~~~iln~LL~~LDg~~~-~~~ViVIATT 601 (979)
++. +.+.|..+..++.+|..|+...||||||||+|.+.+.++. ..+....++.++|+..|+++.. ..+++||+||
T Consensus 119 ~l~-~~~~g~~~~~~~~~f~~a~~~~~~vl~iDEid~l~~~r~~---~~~~~~~~~~~~ll~~l~~~~~~~~~v~vI~at 194 (355)
T 2qp9_X 119 DLV-SKWMGESEKLVKQLFAMARENKPSIIFIDQVDALTGTRGE---GESEASRRIKTELLVQMNGVGNDSQGVLVLGAT 194 (355)
T ss_dssp HHH-SCC---CHHHHHHHHHHHHHTSSEEEEEECGGGGTC---------CTHHHHHHHHHHHHHHHCC---CCEEEEEEE
T ss_pred HHh-hhhcchHHHHHHHHHHHHHHcCCeEEEEechHhhcccCCC---CcchHHHHHHHHHHHHhhcccccCCCeEEEeec
Confidence 997 6789999999999999999999999999999999887653 2344567788999999998854 5679999999
Q ss_pred cchhhchhhhhcCCceeeEeccCCCCHHHHHHHHHHHHHhccchhhhhhhhHHHHHHHcCCCCHHHHHHHHHHHhhhhhc
Q 035561 602 RNIKQIDEALQRPGRMDRIFNLQKPTQSEREKILRIAAQETMDEELIDLVDWRKVAEKTALLRPIELKLVPVALEGSAFR 681 (979)
Q Consensus 602 N~pe~LDpALlRpgRFd~~I~~~~Pd~eeR~~IL~~~l~~~~~~~l~~dvdL~~LA~~T~GfsgaDL~~Lv~aa~~aa~r 681 (979)
|+++.||++++| ||+..++++.|+.++|.+||+.+++... ...++.++..||+.|+||+|+||.++|+.+...+++
T Consensus 195 n~~~~ld~al~r--Rf~~~i~i~~P~~~~r~~il~~~l~~~~--~~~~~~~l~~la~~t~G~sg~dl~~l~~~A~~~a~~ 270 (355)
T 2qp9_X 195 NIPWQLDSAIRR--RFERRIYIPLPDLAARTTMFEINVGDTP--SVLTKEDYRTLGAMTEGYSGSDIAVVVKDALMQPIR 270 (355)
T ss_dssp SCGGGSCHHHHH--TCCEEEECCCCCHHHHHHHHHHHHTTSC--BCCCHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHH
T ss_pred CCcccCCHHHHc--ccCEEEEeCCcCHHHHHHHHHHHHhhCC--CCCCHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHH
Confidence 999999999999 9999999999999999999999998652 224678999999999999999999999888777766
Q ss_pred c
Q 035561 682 S 682 (979)
Q Consensus 682 ~ 682 (979)
+
T Consensus 271 ~ 271 (355)
T 2qp9_X 271 K 271 (355)
T ss_dssp H
T ss_pred H
Confidence 4
No 19
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=100.00 E-value=3.3e-33 Score=295.77 Aligned_cols=231 Identities=32% Similarity=0.491 Sum_probs=185.3
Q ss_pred CCCCCCcccCcHHHHHHHHHHHHhhcChhHHHhcCCCCCceeEecCCCCCChHHHHHHHHHHcCCCEEEeechhhhhhhh
Q 035561 450 PPIPLKDFASVESMREEINEVVAFLQNPSAFQEMGARAPRGVLIVGERGTGKTSLALAIAAEARVPVVNVEAQELEAGLW 529 (979)
Q Consensus 450 ~~~~f~DIvGleevke~L~eiV~~L~~p~~f~~lG~~~P~gVLL~GPPGTGKTtLArAlA~elg~~~i~Is~sdL~~~~~ 529 (979)
|+++|+|++|++++++.|++++..+.++..|..+|...|+++||+||||||||++|+++|++++.+++.++|+++. +.+
T Consensus 1 ~~~~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~vll~G~~GtGKT~la~~la~~~~~~~~~~~~~~~~-~~~ 79 (262)
T 2qz4_A 1 MGVSFKDVAGMHEAKLEVREFVDYLKSPERFLQLGAKVPKGALLLGPPGCGKTLLAKAVATEAQVPFLAMAGAEFV-EVI 79 (262)
T ss_dssp CCCCTTSSCSCHHHHHHHHHHHHHHHCCC------CCCCCEEEEESCTTSSHHHHHHHHHHHHTCCEEEEETTTTS-SSS
T ss_pred CCCCHHHhCCHHHHHHHHHHHHHHHHCHHHHHHcCCCCCceEEEECCCCCCHHHHHHHHHHHhCCCEEEechHHHH-hhc
Confidence 4688999999999999999999999999999999999999999999999999999999999999999999999987 667
Q ss_pred cccchhhHHHHHHHHHhcCCeEEEEcCcccccccccccc-CCCchhhHHHHHHHHhhhcccccCCeEEEEecccchhhch
Q 035561 530 VGQSASNVRELFQTARDLAPVIIFVEDFDLFAGVRGQFI-HTKQQDHESFINQLLVELDGFEKQDGVVLMATTRNIKQID 608 (979)
Q Consensus 530 vG~~~~~Ir~lF~~A~~~aP~ILfIDEIDaL~~~r~~~~-~~~~~~~~~iln~LL~~LDg~~~~~~ViVIATTN~pe~LD 608 (979)
.|.+...++.+|..+....|+||||||+|.++++++... +..+......++.++..++++....++++|+|||.++.+|
T Consensus 80 ~~~~~~~~~~~~~~a~~~~~~vl~iDeid~l~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~~~vi~~tn~~~~ld 159 (262)
T 2qz4_A 80 GGLGAARVRSLFKEARARAPCIVYIDEIDAVGKKRSTTMSGFSNTEEEQTLNQLLVEMDGMGTTDHVIVLASTNRADILD 159 (262)
T ss_dssp TTHHHHHHHHHHHHHHHTCSEEEEEECC-------------------CHHHHHHHHHHHTCCTTCCEEEEEEESCGGGGG
T ss_pred cChhHHHHHHHHHHHHhcCCeEEEEeCcchhhccccccccCccchhHHHHHHHHHHHhhCcCCCCCEEEEecCCChhhcC
Confidence 888899999999999998999999999999987664321 1113344567889999999887778899999999999999
Q ss_pred hhhhcCCceeeEeccCCCCHHHHHHHHHHHHHhccchhhhhhhhHHHHHHHcCCCCHHHHHHHHHHHhhhhhcc
Q 035561 609 EALQRPGRMDRIFNLQKPTQSEREKILRIAAQETMDEELIDLVDWRKVAEKTALLRPIELKLVPVALEGSAFRS 682 (979)
Q Consensus 609 pALlRpgRFd~~I~~~~Pd~eeR~~IL~~~l~~~~~~~l~~dvdL~~LA~~T~GfsgaDL~~Lv~aa~~aa~r~ 682 (979)
++++|+|||+..++++.|+.++|.+|++.+++.... ....+..+..++..+.||+++||.++|+.+...+.++
T Consensus 160 ~~l~~~~R~~~~i~i~~p~~~~r~~il~~~~~~~~~-~~~~~~~~~~l~~~~~g~~~~~l~~l~~~a~~~a~~~ 232 (262)
T 2qz4_A 160 GALMRPGRLDRHVFIDLPTLQERREIFEQHLKSLKL-TQSSTFYSQRLAELTPGFSGADIANICNEAALHAARE 232 (262)
T ss_dssp SGGGSTTSCCEEEECCSCCHHHHHHHHHHHHHHTTC-CBTHHHHHHHHHHTCTTCCHHHHHHHHHHHHTC----
T ss_pred HHHhcCCcCCeEEEeCCcCHHHHHHHHHHHHHhCCC-CcchhhHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHc
Confidence 999999999999999999999999999999986532 2233445689999999999999999998877666543
No 20
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=100.00 E-value=1.8e-32 Score=294.81 Aligned_cols=229 Identities=32% Similarity=0.552 Sum_probs=206.4
Q ss_pred CCCCCCCCcccCcHHHHHHHHHHHHh-hcChhHHHhcCCCCCceeEecCCCCCChHHHHHHHHHHcCCCEEEeechhhhh
Q 035561 448 KNPPIPLKDFASVESMREEINEVVAF-LQNPSAFQEMGARAPRGVLIVGERGTGKTSLALAIAAEARVPVVNVEAQELEA 526 (979)
Q Consensus 448 ~~~~~~f~DIvGleevke~L~eiV~~-L~~p~~f~~lG~~~P~gVLL~GPPGTGKTtLArAlA~elg~~~i~Is~sdL~~ 526 (979)
..|+.+|++++|++++++.|.+.+.. +..+..+..+|...+.++||+||||||||++|+++|++++.+++.++++++.
T Consensus 10 ~~~~~~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ll~G~~GtGKT~la~~la~~~~~~~~~v~~~~~~- 88 (285)
T 3h4m_A 10 ERPNVRYEDIGGLEKQMQEIREVVELPLKHPELFEKVGIEPPKGILLYGPPGTGKTLLAKAVATETNATFIRVVGSELV- 88 (285)
T ss_dssp SSCCCCGGGSCSCHHHHHHHHHHTHHHHHCHHHHHHHCCCCCSEEEEESSSSSSHHHHHHHHHHHTTCEEEEEEGGGGC-
T ss_pred CCCCCCHHHhcCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCeEEEECCCCCcHHHHHHHHHHHhCCCEEEEehHHHH-
Confidence 56788999999999999999998877 8999999999999999999999999999999999999999999999999997
Q ss_pred hhhcccchhhHHHHHHHHHhcCCeEEEEcCccccccccccccCCCchhhHHHHHHHHhhhcccccCCeEEEEecccchhh
Q 035561 527 GLWVGQSASNVRELFQTARDLAPVIIFVEDFDLFAGVRGQFIHTKQQDHESFINQLLVELDGFEKQDGVVLMATTRNIKQ 606 (979)
Q Consensus 527 ~~~vG~~~~~Ir~lF~~A~~~aP~ILfIDEIDaL~~~r~~~~~~~~~~~~~iln~LL~~LDg~~~~~~ViVIATTN~pe~ 606 (979)
+.+.|.....++.+|..+....|+||||||+|.+++++..............+..++..++++....+++||+|||.++.
T Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~~~vI~ttn~~~~ 168 (285)
T 3h4m_A 89 KKFIGEGASLVKDIFKLAKEKAPSIIFIDEIDAIAAKRTDALTGGDREVQRTLMQLLAEMDGFDARGDVKIIGATNRPDI 168 (285)
T ss_dssp CCSTTHHHHHHHHHHHHHHHTCSEEEEEETTHHHHBCCSSSCCGGGGHHHHHHHHHHHHHHTTCSSSSEEEEEECSCGGG
T ss_pred HhccchHHHHHHHHHHHHHHcCCeEEEEECHHHhcccCccccCCccHHHHHHHHHHHHHhhCCCCCCCEEEEEeCCCchh
Confidence 66889999999999999999999999999999998877654344455567788889999998887788999999999999
Q ss_pred chhhhhcCCceeeEeccCCCCHHHHHHHHHHHHHhccchhhhhhhhHHHHHHHcCCCCHHHHHHHHHHHhhhhh
Q 035561 607 IDEALQRPGRMDRIFNLQKPTQSEREKILRIAAQETMDEELIDLVDWRKVAEKTALLRPIELKLVPVALEGSAF 680 (979)
Q Consensus 607 LDpALlRpgRFd~~I~~~~Pd~eeR~~IL~~~l~~~~~~~l~~dvdL~~LA~~T~GfsgaDL~~Lv~aa~~aa~ 680 (979)
+|++++|++||+..+.++.|+.++|.+|++.+++.. ....++++..++..+.|++++||..+|+.+...+.
T Consensus 169 l~~~l~~~~Rf~~~i~~~~p~~~~r~~il~~~~~~~---~~~~~~~~~~l~~~~~g~~~~~i~~l~~~a~~~a~ 239 (285)
T 3h4m_A 169 LDPAILRPGRFDRIIEVPAPDEKGRLEILKIHTRKM---NLAEDVNLEEIAKMTEGCVGAELKAICTEAGMNAI 239 (285)
T ss_dssp BCHHHHSTTSEEEEEECCCCCHHHHHHHHHHHHTTS---CBCTTCCHHHHHHHCTTCCHHHHHHHHHHHHHHHH
T ss_pred cCHHHcCCCcCCeEEEECCCCHHHHHHHHHHHHhcC---CCCCcCCHHHHHHHcCCCCHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999998765 34467889999999999999999999877665544
No 21
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=100.00 E-value=1.2e-32 Score=317.69 Aligned_cols=229 Identities=25% Similarity=0.469 Sum_probs=193.5
Q ss_pred cccCCCCCCCCcccCcHHHHHHHHHHHHh-hcChhHHHhcCCCCCceeEecCCCCCChHHHHHHHHHHc-CCCEEEeech
Q 035561 445 KRVKNPPIPLKDFASVESMREEINEVVAF-LQNPSAFQEMGARAPRGVLIVGERGTGKTSLALAIAAEA-RVPVVNVEAQ 522 (979)
Q Consensus 445 ~~v~~~~~~f~DIvGleevke~L~eiV~~-L~~p~~f~~lG~~~P~gVLL~GPPGTGKTtLArAlA~el-g~~~i~Is~s 522 (979)
.....|+++|+||+|++++++.|.+.+.. +.+|..|.. +..+|+++||+||||||||++|+++|+++ +.+|+.++++
T Consensus 124 i~~~~~~~~~~di~G~~~~k~~l~~~v~~p~~~~~~~~~-~~~~~~~vLL~GppGtGKT~lA~aia~~~~~~~~~~v~~~ 202 (444)
T 2zan_A 124 IVIERPNVKWSDVAGLEGAKEALKEAVILPIKFPHLFTG-KRTPWRGILLFGPPGTGKSYLAKAVATEANNSTFFSISSS 202 (444)
T ss_dssp CBCCCCCCCGGGSCSCHHHHHHHHHHHTHHHHCTTTTSG-GGCCCSEEEEECSTTSSHHHHHHHHHHHCCSSEEEEECCC
T ss_pred eeccCCCCCHHHhcCHHHHHHHHHHHHHHHhhCHHHhhc-cCCCCceEEEECCCCCCHHHHHHHHHHHcCCCCEEEEeHH
Confidence 44567889999999999999999998765 778877763 35677999999999999999999999999 8999999999
Q ss_pred hhhhhhhcccchhhHHHHHHHHHhcCCeEEEEcCccccccccccccCCCchhhHHHHHHHHhhhccccc-CCeEEEEecc
Q 035561 523 ELEAGLWVGQSASNVRELFQTARDLAPVIIFVEDFDLFAGVRGQFIHTKQQDHESFINQLLVELDGFEK-QDGVVLMATT 601 (979)
Q Consensus 523 dL~~~~~vG~~~~~Ir~lF~~A~~~aP~ILfIDEIDaL~~~r~~~~~~~~~~~~~iln~LL~~LDg~~~-~~~ViVIATT 601 (979)
++. +.+.|.++..++.+|..++..+||||||||+|.+++.++. ..+....+++++||..|+++.. ..+++||+||
T Consensus 203 ~l~-~~~~g~~~~~~~~~f~~a~~~~~~vl~iDEid~l~~~~~~---~~~~~~~~~~~~lL~~l~~~~~~~~~v~vI~at 278 (444)
T 2zan_A 203 DLV-SKWLGESEKLVKNLFQLARENKPSIIFIDEIDSLCGSRSE---NESEAARRIKTEFLVQMQGVGVDNDGILVLGAT 278 (444)
T ss_dssp ----------CCCTHHHHHHHHHHSCSEEEEESCTTTTCCCSSC---CCCGGGHHHHHHHHTTTTCSSCCCSSCEEEEEE
T ss_pred HHH-hhhcchHHHHHHHHHHHHHHcCCeEEEEechHhhccCCCC---ccccHHHHHHHHHHHHHhCcccCCCCEEEEecC
Confidence 997 6789999999999999999999999999999999887653 2344567889999999999753 5789999999
Q ss_pred cchhhchhhhhcCCceeeEeccCCCCHHHHHHHHHHHHHhccchhhhhhhhHHHHHHHcCCCCHHHHHHHHHHHhhhhhc
Q 035561 602 RNIKQIDEALQRPGRMDRIFNLQKPTQSEREKILRIAAQETMDEELIDLVDWRKVAEKTALLRPIELKLVPVALEGSAFR 681 (979)
Q Consensus 602 N~pe~LDpALlRpgRFd~~I~~~~Pd~eeR~~IL~~~l~~~~~~~l~~dvdL~~LA~~T~GfsgaDL~~Lv~aa~~aa~r 681 (979)
|+++.||++++| ||+..+.++.|+.++|..|++.++.... ...++.++..||+.|+||+|+||.++|+.+...+++
T Consensus 279 n~~~~ld~al~r--Rf~~~i~i~~P~~~~r~~il~~~l~~~~--~~l~~~~l~~la~~t~G~sgadl~~l~~~a~~~a~r 354 (444)
T 2zan_A 279 NIPWVLDSAIRR--RFEKRIYIPLPEAHARAAMFRLHLGSTQ--NSLTEADFQELGRKTDGYSGADISIIVRDALMQPVR 354 (444)
T ss_dssp SCGGGSCHHHHT--TCCEEEECCCCCHHHHHHHHHHHHTTSC--EECCHHHHHHHHHHTTTCCHHHHHHHHHHHHTHHHH
T ss_pred CCccccCHHHHh--hcceEEEeCCcCHHHHHHHHHHHHhcCC--CCCCHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHH
Confidence 999999999999 9999999999999999999999997652 223678999999999999999999999888877766
Q ss_pred c
Q 035561 682 S 682 (979)
Q Consensus 682 ~ 682 (979)
+
T Consensus 355 ~ 355 (444)
T 2zan_A 355 K 355 (444)
T ss_dssp H
T ss_pred H
Confidence 4
No 22
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=100.00 E-value=7e-32 Score=286.56 Aligned_cols=239 Identities=41% Similarity=0.650 Sum_probs=204.2
Q ss_pred CCCCCCCCcccCcHHHHHHHHHHHHhhcChhHHHhcCCCCCceeEecCCCCCChHHHHHHHHHHcCCCEEEeechhhhhh
Q 035561 448 KNPPIPLKDFASVESMREEINEVVAFLQNPSAFQEMGARAPRGVLIVGERGTGKTSLALAIAAEARVPVVNVEAQELEAG 527 (979)
Q Consensus 448 ~~~~~~f~DIvGleevke~L~eiV~~L~~p~~f~~lG~~~P~gVLL~GPPGTGKTtLArAlA~elg~~~i~Is~sdL~~~ 527 (979)
..|+.+|+|++|+++++.++++++..+.++..+...+...|+|++|+||||||||++++++|+.++.+++.+++.++. .
T Consensus 9 ~~~~~~~~~i~g~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~g~ll~G~~G~GKTtl~~~i~~~~~~~~i~~~~~~~~-~ 87 (254)
T 1ixz_A 9 EAPKVTFKDVAGAEEAKEELKEIVEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEARVPFITASGSDFV-E 87 (254)
T ss_dssp CCCSCCGGGCCSCHHHHHHHHHHHHHHHCHHHHHHTTCCCCSEEEEECCTTSSHHHHHHHHHHHTTCCEEEEEHHHHH-H
T ss_pred CCCCCCHHHhCCcHHHHHHHHHHHHHHHCHHHHHHcCCCCCCeEEEECCCCCCHHHHHHHHHHHhCCCEEEeeHHHHH-H
Confidence 467889999999999999999999888888999999999999999999999999999999999999999999999886 5
Q ss_pred hhcccchhhHHHHHHHHHhcCCeEEEEcCccccccccccccCCCchhhHHHHHHHHhhhcccccCCeEEEEecccchhhc
Q 035561 528 LWVGQSASNVRELFQTARDLAPVIIFVEDFDLFAGVRGQFIHTKQQDHESFINQLLVELDGFEKQDGVVLMATTRNIKQI 607 (979)
Q Consensus 528 ~~vG~~~~~Ir~lF~~A~~~aP~ILfIDEIDaL~~~r~~~~~~~~~~~~~iln~LL~~LDg~~~~~~ViVIATTN~pe~L 607 (979)
.+.+.....++.+|+.+....|+++|+||+|.++..+.......+....+.+++++..|++......++++|+||+|+.+
T Consensus 88 ~~~~~~~~~i~~~~~~~~~~~~~i~~~Deid~l~~~~~~~~~~~~~~~~~~~~~ll~~l~g~~~~~~~i~~a~t~~p~~l 167 (254)
T 1ixz_A 88 MFVGVGAARVRDLFETAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMDGFEKDTAIVVMAATNRPDIL 167 (254)
T ss_dssp SCTTHHHHHHHHHHHHHTTSSSEEEEEETHHHHHC---------CHHHHHHHHHHHHHHHTCCTTCCEEEEEEESCGGGS
T ss_pred HHhhHHHHHHHHHHHHHHhcCCeEEEehhhhhhhcccCccccccchHHHHHHHHHHHHHhCCCCCCCEEEEEccCCchhC
Confidence 56777888899999999888899999999999987664322223455678889999999998887889999999999999
Q ss_pred hhhhhcCCceeeEeccCCCCHHHHHHHHHHHHHhccchhhhhhhhHHHHHHHcCCCCHHHHHHHHHHHhhhhhcc--CCC
Q 035561 608 DEALQRPGRMDRIFNLQKPTQSEREKILRIAAQETMDEELIDLVDWRKVAEKTALLRPIELKLVPVALEGSAFRS--KFL 685 (979)
Q Consensus 608 DpALlRpgRFd~~I~~~~Pd~eeR~~IL~~~l~~~~~~~l~~dvdL~~LA~~T~GfsgaDL~~Lv~aa~~aa~r~--~~~ 685 (979)
|++++|+|||++.++++.|+.++|.+||+.+++.. ...+++++..+|..|+||+|+||.++|+.+...+.++ ..+
T Consensus 168 d~~l~r~~rf~~~i~i~~p~~~~r~~il~~~~~~~---~~~~~~~~~~la~~~~G~~~~dl~~~~~~a~~~a~~~~~~~I 244 (254)
T 1ixz_A 168 DPALLRPGRFDRQIAIDAPDVKGREQILRIHARGK---PLAEDVDLALLAKRTPGFVGADLENLLNEAALLAAREGRRKI 244 (254)
T ss_dssp CGGGGSTTSSCEEEECCSCCHHHHHHHHHHHHTTS---CBCTTCCHHHHHHTCTTCCHHHHHHHHHHHHHHHHHTTCSSB
T ss_pred CHHHcCCCcCCeEEeeCCcCHHHHHHHHHHHHcCC---CCCcccCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhcCCCc
Confidence 99999999999999999999999999999888654 4567788999999999999999999998776665543 234
Q ss_pred ChHHH
Q 035561 686 DTDEL 690 (979)
Q Consensus 686 s~~ei 690 (979)
+.+++
T Consensus 245 ~~~dl 249 (254)
T 1ixz_A 245 TMKDL 249 (254)
T ss_dssp CHHHH
T ss_pred CHHHH
Confidence 44443
No 23
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=99.97 E-value=7.5e-33 Score=295.59 Aligned_cols=252 Identities=35% Similarity=0.525 Sum_probs=207.0
Q ss_pred CCCCCCCCcccCcHHHHHHHHHHHHhhcChhHHHhcCCCCCceeEecCCCCCChHHHHHHHHHHcCCCEEEeechhhhhh
Q 035561 448 KNPPIPLKDFASVESMREEINEVVAFLQNPSAFQEMGARAPRGVLIVGERGTGKTSLALAIAAEARVPVVNVEAQELEAG 527 (979)
Q Consensus 448 ~~~~~~f~DIvGleevke~L~eiV~~L~~p~~f~~lG~~~P~gVLL~GPPGTGKTtLArAlA~elg~~~i~Is~sdL~~~ 527 (979)
+.++.+|++++|.+++++.|.+++.++.++..|..+|.+.|+++||+||||||||++|+++|++++.+++.++++++. +
T Consensus 4 ~~~~~~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~~~~~~~~v~~~~~~-~ 82 (268)
T 2r62_A 4 EKPNVRFKDMAGNEEAKEEVVEIVDFLKYPERYANLGAKIPKGVLLVGPPGTGKTLLAKAVAGEAHVPFFSMGGSSFI-E 82 (268)
T ss_dssp CCCCCCSTTSSSCTTTHHHHHHHHHHHHCHHHHHHHSCCCCSCCCCBCSSCSSHHHHHHHHHHHHTCCCCCCCSCTTT-T
T ss_pred cCCCCCHHHhCCcHHHHHHHHHHHHHHHChHHHHHCCCCCCceEEEECCCCCcHHHHHHHHHHHhCCCEEEechHHHH-H
Confidence 467789999999999999999999999999999999999999999999999999999999999999999999999987 5
Q ss_pred hhcccchhhHHHHHHHHHhcCCeEEEEcCccccccccccc-cCCCchhhHHHHHHHHhhhccccc-CCeEEEEecccchh
Q 035561 528 LWVGQSASNVRELFQTARDLAPVIIFVEDFDLFAGVRGQF-IHTKQQDHESFINQLLVELDGFEK-QDGVVLMATTRNIK 605 (979)
Q Consensus 528 ~~vG~~~~~Ir~lF~~A~~~aP~ILfIDEIDaL~~~r~~~-~~~~~~~~~~iln~LL~~LDg~~~-~~~ViVIATTN~pe 605 (979)
.+.|.+...++.+|+.+....|+||||||+|.+...+... ....+....+.++.|+..++++.. ...++||+|||.++
T Consensus 83 ~~~~~~~~~~~~~~~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~v~vi~ttn~~~ 162 (268)
T 2r62_A 83 MFVGLGASRVRDLFETAKKQAPSIIFIDEIDAIGKSRAAGGVVSGNDEREQTLNQLLAEMDGFGSENAPVIVLAATNRPE 162 (268)
T ss_dssp SCSSSCSSSSSTTHHHHHHSCSCEEEESCGGGTTC----------CCCSCSSTTTTTTTTTCSSCSCSCCEEEECBSCCT
T ss_pred hhcchHHHHHHHHHHHHHhcCCeEEEEeChhhhcccccccccCCCchhHHHHHHHHHHHhhCcccCCCCEEEEEecCCch
Confidence 6788888888999999999899999999999998765321 111223334567788888888754 34589999999999
Q ss_pred hchhhhhcCCceeeEeccCCCCHHHHHHHHHHHHHhccchhhhhhhhHHHHHHHcCCCCHHHHHHHHHHHhhhhhcc--C
Q 035561 606 QIDEALQRPGRMDRIFNLQKPTQSEREKILRIAAQETMDEELIDLVDWRKVAEKTALLRPIELKLVPVALEGSAFRS--K 683 (979)
Q Consensus 606 ~LDpALlRpgRFd~~I~~~~Pd~eeR~~IL~~~l~~~~~~~l~~dvdL~~LA~~T~GfsgaDL~~Lv~aa~~aa~r~--~ 683 (979)
.+|++++|+|||+..+.++.|+.++|.+||+.+++.. ...+++++..+++.+.||+|+||.++|+.+...+..+ .
T Consensus 163 ~ld~~l~r~~Rf~~~i~i~~p~~~~r~~il~~~~~~~---~~~~~~~~~~la~~~~g~~g~dl~~l~~~a~~~a~~~~~~ 239 (268)
T 2r62_A 163 ILDPALMRPGRFDRQVLVDKPDFNGRVEILKVHIKGV---KLANDVNLQEVAKLTAGLAGADLANIINEAALLAGRNNQK 239 (268)
T ss_dssp TSCGGGGSSSSSCCCCBCCCCCTTTHHHHHHHHTSSS---CCCSSCCTTTTTSSSCSSCHHHHHHHHHHHHHTTSSSCCC
T ss_pred hcCHhHcCCCCCCeEEEecCcCHHHHHHHHHHHHhcC---CCCCccCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhccC
Confidence 9999999999999999999999999999999988754 3346678899999999999999999998877766543 2
Q ss_pred CCChHHHhhhcchhhhccCCCccccc
Q 035561 684 FLDTDELMSYCGWFATFSGVVPKWFR 709 (979)
Q Consensus 684 ~~s~~ei~~~~d~~aAl~~~~P~~lR 709 (979)
.++.+ ++..+++...|...+
T Consensus 240 ~i~~~------~~~~a~~~~~~~~~~ 259 (268)
T 2r62_A 240 EVRQQ------HLKEAVERGIAGLEK 259 (268)
T ss_dssp SCCHH------HHHTSCTTCCCCCC-
T ss_pred CcCHH------HHHHHHHHHhhcchh
Confidence 34433 344555555554443
No 24
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=99.97 E-value=1.6e-30 Score=281.66 Aligned_cols=226 Identities=27% Similarity=0.431 Sum_probs=191.4
Q ss_pred CCCCCCCCcccCcHHHHHHHHHHHHh-hcChhHHHhcCCCCCceeEecCCCCCChHHHHHHHHHHcCCCEEEeechhhhh
Q 035561 448 KNPPIPLKDFASVESMREEINEVVAF-LQNPSAFQEMGARAPRGVLIVGERGTGKTSLALAIAAEARVPVVNVEAQELEA 526 (979)
Q Consensus 448 ~~~~~~f~DIvGleevke~L~eiV~~-L~~p~~f~~lG~~~P~gVLL~GPPGTGKTtLArAlA~elg~~~i~Is~sdL~~ 526 (979)
+.++++|++++|++++++.|.+.+.. +.+|..|...+ .++.++||+||||||||++|+++|++++.+++.++|+++.
T Consensus 14 ~~~~~~~~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~-~~~~~vll~Gp~GtGKT~la~~la~~~~~~~~~i~~~~l~- 91 (297)
T 3b9p_A 14 GGAKVEWTDIAGQDVAKQALQEMVILPSVRPELFTGLR-APAKGLLLFGPPGNGKTLLARAVATECSATFLNISAASLT- 91 (297)
T ss_dssp CSSCCCGGGSCCCHHHHHHHHHHTHHHHHCGGGSCGGG-CCCSEEEEESSSSSCHHHHHHHHHHHTTCEEEEEESTTTS-
T ss_pred CCCCCCHHHhCChHHHHHHHHHHHHhhhhCHHHHhcCC-CCCCeEEEECcCCCCHHHHHHHHHHHhCCCeEEeeHHHHh-
Confidence 56789999999999999999988766 67777776554 4578999999999999999999999999999999999987
Q ss_pred hhhcccchhhHHHHHHHHHhcCCeEEEEcCccccccccccccCCCchhhHHHHHHHHhhhcccccC---CeEEEEecccc
Q 035561 527 GLWVGQSASNVRELFQTARDLAPVIIFVEDFDLFAGVRGQFIHTKQQDHESFINQLLVELDGFEKQ---DGVVLMATTRN 603 (979)
Q Consensus 527 ~~~vG~~~~~Ir~lF~~A~~~aP~ILfIDEIDaL~~~r~~~~~~~~~~~~~iln~LL~~LDg~~~~---~~ViVIATTN~ 603 (979)
+.+.|.+...++.+|..+....|+||||||+|.+...+... .........+.|+..++++... .+++||+|||+
T Consensus 92 ~~~~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~---~~~~~~~~~~~ll~~l~~~~~~~~~~~v~vi~~tn~ 168 (297)
T 3b9p_A 92 SKYVGDGEKLVRALFAVARHMQPSIIFIDEVDSLLSERSSS---EHEASRRLKTEFLVEFDGLPGNPDGDRIVVLAATNR 168 (297)
T ss_dssp SSSCSCHHHHHHHHHHHHHHTCSEEEEEETGGGTSBCC--------CCSHHHHHHHHHHHHHCC------CEEEEEEESC
T ss_pred hcccchHHHHHHHHHHHHHHcCCcEEEeccHHHhccccccC---cchHHHHHHHHHHHHHhcccccCCCCcEEEEeecCC
Confidence 66889999999999999999999999999999998766431 2233456788899999887543 56999999999
Q ss_pred hhhchhhhhcCCceeeEeccCCCCHHHHHHHHHHHHHhccchhhhhhhhHHHHHHHcCCCCHHHHHHHHHHHhhhhhcc
Q 035561 604 IKQIDEALQRPGRMDRIFNLQKPTQSEREKILRIAAQETMDEELIDLVDWRKVAEKTALLRPIELKLVPVALEGSAFRS 682 (979)
Q Consensus 604 pe~LDpALlRpgRFd~~I~~~~Pd~eeR~~IL~~~l~~~~~~~l~~dvdL~~LA~~T~GfsgaDL~~Lv~aa~~aa~r~ 682 (979)
++.++++++| ||+..++++.|+.++|..|++.+++... ...++.++..+++.|.||+++||.++|+.+...++++
T Consensus 169 ~~~l~~~l~~--R~~~~i~~~~p~~~~r~~il~~~~~~~~--~~~~~~~~~~la~~~~g~~~~~l~~l~~~a~~~a~r~ 243 (297)
T 3b9p_A 169 PQELDEAALR--RFTKRVYVSLPDEQTRELLLNRLLQKQG--SPLDTEALRRLAKITDGYSGSDLTALAKDAALEPIRE 243 (297)
T ss_dssp GGGBCHHHHH--HCCEEEECCCCCHHHHHHHHHHHHGGGS--CCSCHHHHHHHHHHTTTCCHHHHHHHHHHHTTHHHHT
T ss_pred hhhCCHHHHh--hCCeEEEeCCcCHHHHHHHHHHHHHhcC--CCCCHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHH
Confidence 9999999999 9999999999999999999999987642 2235568899999999999999999998877666654
No 25
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=99.97 E-value=2.1e-30 Score=279.64 Aligned_cols=238 Identities=41% Similarity=0.651 Sum_probs=203.0
Q ss_pred CCCCCCCcccCcHHHHHHHHHHHHhhcChhHHHhcCCCCCceeEecCCCCCChHHHHHHHHHHcCCCEEEeechhhhhhh
Q 035561 449 NPPIPLKDFASVESMREEINEVVAFLQNPSAFQEMGARAPRGVLIVGERGTGKTSLALAIAAEARVPVVNVEAQELEAGL 528 (979)
Q Consensus 449 ~~~~~f~DIvGleevke~L~eiV~~L~~p~~f~~lG~~~P~gVLL~GPPGTGKTtLArAlA~elg~~~i~Is~sdL~~~~ 528 (979)
.++++|+|++|.+++++++++++..+.++..+...+...|+|++|+||||||||++++++|+.++.+++.+++.++. ..
T Consensus 34 ~~~~~~~~i~g~~~~~~~l~~l~~~~~~~~~l~~~~~~~~~gvll~Gp~GtGKTtl~~~i~~~~~~~~i~~~~~~~~-~~ 112 (278)
T 1iy2_A 34 APKVTFKDVAGAEEAKEELKEIVEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEARVPFITASGSDFV-EM 112 (278)
T ss_dssp CCCCCGGGSSSCHHHHHHHHHHHHHHHCHHHHHHTTCCCCCEEEEECCTTSSHHHHHHHHHHHTTCCEEEEEHHHHH-HS
T ss_pred CCCCCHHHhCChHHHHHHHHHHHHHHHCHHHHHHcCCCCCCeEEEECCCcChHHHHHHHHHHHcCCCEEEecHHHHH-HH
Confidence 47889999999999999999999988889999999999999999999999999999999999999999999999886 55
Q ss_pred hcccchhhHHHHHHHHHhcCCeEEEEcCccccccccccccCCCchhhHHHHHHHHhhhcccccCCeEEEEecccchhhch
Q 035561 529 WVGQSASNVRELFQTARDLAPVIIFVEDFDLFAGVRGQFIHTKQQDHESFINQLLVELDGFEKQDGVVLMATTRNIKQID 608 (979)
Q Consensus 529 ~vG~~~~~Ir~lF~~A~~~aP~ILfIDEIDaL~~~r~~~~~~~~~~~~~iln~LL~~LDg~~~~~~ViVIATTN~pe~LD 608 (979)
+.+.....++.+|+.+....|+++|+||+|.++..+............+.+++++.+|++......++++|+||+|+.||
T Consensus 113 ~~~~~~~~i~~~~~~~~~~~~~i~~iDeid~l~~~~~~~~~~~~~~~~~~~~~ll~~lsgg~~~~~~i~~a~t~~p~~ld 192 (278)
T 1iy2_A 113 FVGVGAARVRDLFETAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMDGFEKDTAIVVMAATNRPDILD 192 (278)
T ss_dssp TTTHHHHHHHHHHHHHHTSCSEEEEEETHHHHHCC--------CHHHHHHHHHHHHHHTTCCTTCCEEEEEEESCTTSSC
T ss_pred HhhHHHHHHHHHHHHHHhcCCcEEehhhhHhhhcccccccCCcchHHHHHHHHHHHHHhCCCCCCCEEEEEecCCchhCC
Confidence 67777888999999998888999999999998766543212234456778899999999988777899999999999999
Q ss_pred hhhhcCCceeeEeccCCCCHHHHHHHHHHHHHhccchhhhhhhhHHHHHHHcCCCCHHHHHHHHHHHhhhhhcc--CCCC
Q 035561 609 EALQRPGRMDRIFNLQKPTQSEREKILRIAAQETMDEELIDLVDWRKVAEKTALLRPIELKLVPVALEGSAFRS--KFLD 686 (979)
Q Consensus 609 pALlRpgRFd~~I~~~~Pd~eeR~~IL~~~l~~~~~~~l~~dvdL~~LA~~T~GfsgaDL~~Lv~aa~~aa~r~--~~~s 686 (979)
++++|++||++.++++.|+.++|.+||+.+++.. ...+++++..+|..++|++++||.++|+.+...+.+. ..++
T Consensus 193 ~~l~r~~rf~~~i~i~~p~~~~r~~il~~~~~~~---~~~~~~~~~~la~~~~G~~~~dl~~l~~~a~~~a~~~~~~~I~ 269 (278)
T 1iy2_A 193 PALLRPGRFDRQIAIDAPDVKGREQILRIHARGK---PLAEDVDLALLAKRTPGFVGADLENLLNEAALLAAREGRRKIT 269 (278)
T ss_dssp HHHHSTTSSCCEEECCCCCHHHHHHHHHHHHTTS---CBCTTCCHHHHHHTCTTCCHHHHHHHHHHHHHHHHHTTCCSBC
T ss_pred HhHcCCCcCCeEEEeCCcCHHHHHHHHHHHHccC---CCCcccCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhCCCCcC
Confidence 9999999999999999999999999999988654 4556788999999999999999999998776655443 2344
Q ss_pred hHHH
Q 035561 687 TDEL 690 (979)
Q Consensus 687 ~~ei 690 (979)
.+++
T Consensus 270 ~~dl 273 (278)
T 1iy2_A 270 MKDL 273 (278)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 4443
No 26
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=99.97 E-value=1.6e-32 Score=337.86 Aligned_cols=232 Identities=31% Similarity=0.539 Sum_probs=203.4
Q ss_pred CCCCCCCCcccCcHHHHHHHHHHHHh-hcChhHHHhcCCCCCceeEecCCCCCChHHHHHHHHHHcCCCEEEeechhhhh
Q 035561 448 KNPPIPLKDFASVESMREEINEVVAF-LQNPSAFQEMGARAPRGVLIVGERGTGKTSLALAIAAEARVPVVNVEAQELEA 526 (979)
Q Consensus 448 ~~~~~~f~DIvGleevke~L~eiV~~-L~~p~~f~~lG~~~P~gVLL~GPPGTGKTtLArAlA~elg~~~i~Is~sdL~~ 526 (979)
..+.++|+|++|++++|+.|.+.+.+ +.++..|..++..++.++||+||||||||++|+++|++++.+++.++++++.
T Consensus 470 ~~~~v~~~di~gl~~vk~~l~~~v~~~~~~~~~~~~~~~~~~~~vLL~GppGtGKT~Lakala~~~~~~~i~v~~~~l~- 548 (806)
T 1ypw_A 470 EVPQVTWEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQANFISIKGPELL- 548 (806)
T ss_dssp CCCCCSSCSSSCCCCHHHHHHTTTTSSSSSCTTTTCCCCCCCCCCCCBCCTTSSHHHHHHHHHHHHTCCCCCCCCSSST-
T ss_pred cCccccccccccchhhhhhHHHHHHhhhhchHHHHhcCCCCCceeEEECCCCCCHHHHHHHHHHHhCCCEEEEechHhh-
Confidence 45788999999999999999998887 7788888888999999999999999999999999999999999999999997
Q ss_pred hhhcccchhhHHHHHHHHHhcCCeEEEEcCccccccccccccCCCchhhHHHHHHHHhhhcccccCCeEEEEecccchhh
Q 035561 527 GLWVGQSASNVRELFQTARDLAPVIIFVEDFDLFAGVRGQFIHTKQQDHESFINQLLVELDGFEKQDGVVLMATTRNIKQ 606 (979)
Q Consensus 527 ~~~vG~~~~~Ir~lF~~A~~~aP~ILfIDEIDaL~~~r~~~~~~~~~~~~~iln~LL~~LDg~~~~~~ViVIATTN~pe~ 606 (979)
+.|+|+.+..++.+|+.|+...||||||||||.+++.++...+..+....+++++||..||++....+++||+|||+++.
T Consensus 549 ~~~~g~~~~~i~~~f~~a~~~~p~vl~iDEid~l~~~r~~~~~~~~~~~~~v~~~LL~~ld~~~~~~~v~vI~tTN~~~~ 628 (806)
T 1ypw_A 549 TMWFGESEANVREIFDKARQAAPCVLFFDELDSIAKARGGNIGDGGGAADRVINQILTEMDGMSTKKNVFIIGATNRPDI 628 (806)
T ss_dssp TCCTTTSSHHHHHHHHHHHHHCSBCCCCSSHHHHCCTTTTCCSHHHHHHHHHHHHHHTTCC------CCBCCCCCBSCGG
T ss_pred hhhcCccHHHHHHHHHHHHhcCCeEEEEEChhhhhhhccCCCCCcchhHHHHHHHHHHHHhcccccCCeEEEEecCCccc
Confidence 67899999999999999999999999999999999887643233344567899999999999988889999999999999
Q ss_pred chhhhhcCCceeeEeccCCCCHHHHHHHHHHHHHhccchhhhhhhhHHHHHHHcCCCCHHHHHHHHHHHhhhhhccC
Q 035561 607 IDEALQRPGRMDRIFNLQKPTQSEREKILRIAAQETMDEELIDLVDWRKVAEKTALLRPIELKLVPVALEGSAFRSK 683 (979)
Q Consensus 607 LDpALlRpgRFd~~I~~~~Pd~eeR~~IL~~~l~~~~~~~l~~dvdL~~LA~~T~GfsgaDL~~Lv~aa~~aa~r~~ 683 (979)
||++++|||||+..|+++.|+.++|.+||+.++++. +...++++..||+.|.||||+||.++|+.+...++++.
T Consensus 629 ld~allrpgRf~~~i~~~~p~~~~r~~Il~~~l~~~---~~~~~~~l~~la~~t~g~sgadi~~l~~~a~~~a~~~~ 702 (806)
T 1ypw_A 629 IDPAILRPGRLDQLIYIPLPDEKSRVAILKANLRKS---PVAKDVDLEFLAKMTNGFSGADLTEICQRACKLAIRES 702 (806)
T ss_dssp GSCTTSSGGGTTSCCCCCCCCCSHHHHHTTTTTSCC-------CCCCSCSCGGGSSSCCHHHHHHHHHHHHHHHSCC
T ss_pred CCHHHhCccccCceeecCCCCHHHHHHHHHHHhccC---CCCcccCHHHHHHhccccCHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999998765 45678899999999999999999999998888777754
No 27
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=99.97 E-value=3.9e-30 Score=288.38 Aligned_cols=226 Identities=25% Similarity=0.475 Sum_probs=192.4
Q ss_pred cCCCCCCCCcccCcHHHHHHHHHHHHh-hcChhHHHhcCCCCCceeEecCCCCCChHHHHHHHHHHcCCCEEEeechhhh
Q 035561 447 VKNPPIPLKDFASVESMREEINEVVAF-LQNPSAFQEMGARAPRGVLIVGERGTGKTSLALAIAAEARVPVVNVEAQELE 525 (979)
Q Consensus 447 v~~~~~~f~DIvGleevke~L~eiV~~-L~~p~~f~~lG~~~P~gVLL~GPPGTGKTtLArAlA~elg~~~i~Is~sdL~ 525 (979)
...++.+|+||+|++++++.|.+.+.. +.++..|...+ ..++++||+||||||||++|+++|++++.+++.++|+++.
T Consensus 76 ~~~~~~~~~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~-~~~~~vLl~GppGtGKT~la~aia~~~~~~~~~i~~~~l~ 154 (357)
T 3d8b_A 76 DHGPPVNWEDIAGVEFAKATIKEIVVWPMLRPDIFTGLR-GPPKGILLFGPPGTGKTLIGKCIASQSGATFFSISASSLT 154 (357)
T ss_dssp CCSCCCCGGGSCSCHHHHHHHHHHTHHHHHCTTTSCGGG-SCCSEEEEESSTTSSHHHHHHHHHHHTTCEEEEEEGGGGC
T ss_pred cCCCCCCHHHhCChHHHHHHHHHHHHHHhhChHhHhhcc-CCCceEEEECCCCCCHHHHHHHHHHHcCCeEEEEehHHhh
Confidence 356789999999999999999998876 77777776554 6789999999999999999999999999999999999997
Q ss_pred hhhhcccchhhHHHHHHHHHhcCCeEEEEcCccccccccccccCCCchhhHHHHHHHHhhhccccc--CCeEEEEecccc
Q 035561 526 AGLWVGQSASNVRELFQTARDLAPVIIFVEDFDLFAGVRGQFIHTKQQDHESFINQLLVELDGFEK--QDGVVLMATTRN 603 (979)
Q Consensus 526 ~~~~vG~~~~~Ir~lF~~A~~~aP~ILfIDEIDaL~~~r~~~~~~~~~~~~~iln~LL~~LDg~~~--~~~ViVIATTN~ 603 (979)
+.+.|.....++.+|..+....|+||||||+|.+.+.++. +.+....+++++|+..+++... ..+++||+|||.
T Consensus 155 -~~~~g~~~~~~~~~~~~a~~~~~~vl~iDEid~l~~~~~~---~~~~~~~~~~~~lL~~l~~~~~~~~~~v~vI~atn~ 230 (357)
T 3d8b_A 155 -SKWVGEGEKMVRALFAVARCQQPAVIFIDEIDSLLSQRGD---GEHESSRRIKTEFLVQLDGATTSSEDRILVVGATNR 230 (357)
T ss_dssp -CSSTTHHHHHHHHHHHHHHHTCSEEEEEETHHHHTBC---------CHHHHHHHHHHHHHHC----CCCCEEEEEEESC
T ss_pred -ccccchHHHHHHHHHHHHHhcCCeEEEEeCchhhhccCCC---CcchHHHHHHHHHHHHHhcccccCCCCEEEEEecCC
Confidence 6788999999999999999989999999999999876643 2344566788899999998643 467999999999
Q ss_pred hhhchhhhhcCCceeeEeccCCCCHHHHHHHHHHHHHhccchhhhhhhhHHHHHHHcCCCCHHHHHHHHHHHhhhhhc
Q 035561 604 IKQIDEALQRPGRMDRIFNLQKPTQSEREKILRIAAQETMDEELIDLVDWRKVAEKTALLRPIELKLVPVALEGSAFR 681 (979)
Q Consensus 604 pe~LDpALlRpgRFd~~I~~~~Pd~eeR~~IL~~~l~~~~~~~l~~dvdL~~LA~~T~GfsgaDL~~Lv~aa~~aa~r 681 (979)
++.++++++| ||+..++++.|+.++|.+|++.+++... ...++.++..|++.|.||+++||..+|+.+...+++
T Consensus 231 ~~~l~~~l~~--Rf~~~i~i~~p~~~~r~~il~~~~~~~~--~~l~~~~l~~la~~t~G~s~~dl~~l~~~a~~~~ir 304 (357)
T 3d8b_A 231 PQEIDEAARR--RLVKRLYIPLPEASARKQIVINLMSKEQ--CCLSEEEIEQIVQQSDAFSGADMTQLCREASLGPIR 304 (357)
T ss_dssp GGGBCHHHHT--TCCEEEECCCCCHHHHHHHHHHHHHTSC--BCCCHHHHHHHHHHTTTCCHHHHHHHHHHHHTHHHH
T ss_pred hhhCCHHHHh--hCceEEEeCCcCHHHHHHHHHHHHhhcC--CCccHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHH
Confidence 9999999999 9999999999999999999999987642 123566899999999999999999999877666655
No 28
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=99.97 E-value=3.6e-30 Score=316.91 Aligned_cols=302 Identities=30% Similarity=0.429 Sum_probs=255.4
Q ss_pred CCCCCCCcccCcHHHHHHHHHHHHh-hcChhHHHhcCCCCCceeEecCCCCCChHHHHHHHHHHcCCCEEEeechhhhhh
Q 035561 449 NPPIPLKDFASVESMREEINEVVAF-LQNPSAFQEMGARAPRGVLIVGERGTGKTSLALAIAAEARVPVVNVEAQELEAG 527 (979)
Q Consensus 449 ~~~~~f~DIvGleevke~L~eiV~~-L~~p~~f~~lG~~~P~gVLL~GPPGTGKTtLArAlA~elg~~~i~Is~sdL~~~ 527 (979)
.++++|+||+|++++++.|++.+.. +.+|..|..++++++.++||+||||||||++|+++|++++.+++.++|+++. +
T Consensus 198 ~~~v~~~di~G~~~~~~~l~e~i~~~l~~~~~~~~l~i~~~~~vLL~Gp~GtGKTtLarala~~l~~~~i~v~~~~l~-~ 276 (806)
T 1ypw_A 198 LNEVGYDDVGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANETGAFFFLINGPEIM-S 276 (806)
T ss_dssp SSSCCGGGCCSCSGGGGHHHHHHHHHHHCGGGGTSSCCCCCCEEEECSCTTSSHHHHHHHHHHTTTCEEEEEEHHHHS-S
T ss_pred cCCCCHHHhCChHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCeEEEECcCCCCHHHHHHHHHHHcCCcEEEEEchHhh-h
Confidence 4578999999999999999999987 9999999999999999999999999999999999999999999999999997 6
Q ss_pred hhcccchhhHHHHHHHHHhcCCeEEEEcCccccccccccccCCCchhhHHHHHHHHhhhcccccCCeEEEEecccchhhc
Q 035561 528 LWVGQSASNVRELFQTARDLAPVIIFVEDFDLFAGVRGQFIHTKQQDHESFINQLLVELDGFEKQDGVVLMATTRNIKQI 607 (979)
Q Consensus 528 ~~vG~~~~~Ir~lF~~A~~~aP~ILfIDEIDaL~~~r~~~~~~~~~~~~~iln~LL~~LDg~~~~~~ViVIATTN~pe~L 607 (979)
.+.|..+..++.+|..+....|+++||||+|.+++.++. .......+++++|+..++++.....+++|+|||+++.+
T Consensus 277 ~~~g~~~~~l~~vf~~a~~~~p~il~iDEid~l~~~~~~---~~~~~~~~~~~~Ll~ll~g~~~~~~v~vI~atn~~~~l 353 (806)
T 1ypw_A 277 KLAGESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREK---THGEVERRIVSQLLTLMDGLKQRAHVIVMAATNRPNSI 353 (806)
T ss_dssp SSTTHHHHHHHHHHHHHHHHCSEEEEEESGGGTSCTTSC---CCSHHHHHHHHHHHHHHHSSCTTSCCEEEEECSCTTTS
T ss_pred hhhhhHHHHHHHHHHHHHhcCCcEEEeccHHHhhhcccc---ccchHHHHHHHHHHHHhhhhcccccEEEecccCCchhc
Confidence 788999999999999999999999999999999887653 22344567888999999998888889999999999999
Q ss_pred hhhhhcCCceeeEeccCCCCHHHHHHHHHHHHHhccchhhhhhhhHHHHHHHcCCCCHHHHHHHHHHHhhhhhccCC--C
Q 035561 608 DEALQRPGRMDRIFNLQKPTQSEREKILRIAAQETMDEELIDLVDWRKVAEKTALLRPIELKLVPVALEGSAFRSKF--L 685 (979)
Q Consensus 608 DpALlRpgRFd~~I~~~~Pd~eeR~~IL~~~l~~~~~~~l~~dvdL~~LA~~T~GfsgaDL~~Lv~aa~~aa~r~~~--~ 685 (979)
|++++++|||++.+.++.|+.++|.+|++.++++. ....++++..++..++||+++|+..+|+.+...++++.. .
T Consensus 354 d~al~r~gRf~~~i~i~~p~~~~r~~il~~~~~~~---~l~~~~~l~~la~~t~g~~g~dl~~l~~ea~~~a~r~~~~~i 430 (806)
T 1ypw_A 354 DPALRRFGRFDREVDIGIPDATGRLEILQIHTKNM---KLADDVDLEQVANETHGHVGADLAALCSEAALQAIRKKMDLI 430 (806)
T ss_dssp CTTTTSTTSSCEEECCCCCCHHHHHHHHHHTTTTS---CCCTTCCTHHHHHSCSSCCHHHHHHHHHHHHHHHHHHTTTTT
T ss_pred CHHHhcccccccccccCCCCHHHHHHHHHHHHhcC---CCcccchhHHHHHhhcCcchHHHHHHHHHHHHHHHhhhcccc
Confidence 99999999999999999999999999999988765 455678899999999999999999999776665554321 1
Q ss_pred C-------hHH----HhhhcchhhhccCCCccccccchhhhhhhhhhhhhcCccccHHHHHHHHHhhhccccc-------
Q 035561 686 D-------TDE----LMSYCGWFATFSGVVPKWFRKTKIVKKISRMLVDHLGLTLTKEDLQNVVDLMEPYGQI------- 747 (979)
Q Consensus 686 s-------~~e----i~~~~d~~aAl~~~~P~~lR~~~llk~~~v~w~DiGGl~vtkedL~eAIe~~~kyg~i------- 747 (979)
. ... .....++..++....|+..+.. ....+++.|.+++|+...++.|.+++.++.++...
T Consensus 431 ~~~~~~~~~~~~~~~~v~~~d~~~al~~~~~s~~~~~-~~~~~~v~~~di~gl~~vk~~l~~~v~~~~~~~~~~~~~~~~ 509 (806)
T 1ypw_A 431 DLEDETIDAEVMNSLAVTMDDFRWALSQSNPSALRET-VVEVPQVTWEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMT 509 (806)
T ss_dssp SCHHHHCCHHHHTTCCCCTTHHHHHHHHSCCCCCCCC-CCCCCCCSSCSSSCCCCHHHHHHTTTTSSSSSCTTTTCCCCC
T ss_pred chhhhccchhhhhhhhhhhhhhhccccccCchhhhhh-cccCccccccccccchhhhhhHHHHHHhhhhchHHHHhcCCC
Confidence 1 100 1233467777777778777754 46678899999999999999999999886655422
Q ss_pred -cccccccCCCC
Q 035561 748 -SNGIELLTPPL 758 (979)
Q Consensus 748 -~aG~e~~sp~l 758 (979)
..++-+.+||.
T Consensus 510 ~~~~vLL~GppG 521 (806)
T 1ypw_A 510 PSKGVLFYGPPG 521 (806)
T ss_dssp CCCCCCCBCCTT
T ss_pred CCceeEEECCCC
Confidence 34566777777
No 29
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=99.96 E-value=1.9e-29 Score=285.39 Aligned_cols=227 Identities=26% Similarity=0.414 Sum_probs=184.8
Q ss_pred cCCCCCCCCcccCcHHHHHHHHHHHHh-hcChhHHHhcCCCCCceeEecCCCCCChHHHHHHHHHHcCCCEEEeechhhh
Q 035561 447 VKNPPIPLKDFASVESMREEINEVVAF-LQNPSAFQEMGARAPRGVLIVGERGTGKTSLALAIAAEARVPVVNVEAQELE 525 (979)
Q Consensus 447 v~~~~~~f~DIvGleevke~L~eiV~~-L~~p~~f~~lG~~~P~gVLL~GPPGTGKTtLArAlA~elg~~~i~Is~sdL~ 525 (979)
...++++|+||+|++++++.|.+.+.. +.++..|...+ .++.++||+||||||||++|+++|.+++.+|+.++|+++.
T Consensus 107 ~~~~~~~~~~iiG~~~~~~~l~~~~~~~~~~~~~~~~~~-~~~~~vLL~GppGtGKT~la~aia~~~~~~~~~v~~~~l~ 185 (389)
T 3vfd_A 107 DNGTAVKFDDIAGQDLAKQALQEIVILPSLRPELFTGLR-APARGLLLFGPPGNGKTMLAKAVAAESNATFFNISAASLT 185 (389)
T ss_dssp CCSCCCCGGGSCSCHHHHHHHHHHTHHHHHCTTTSCGGG-CCCSEEEEESSTTSCHHHHHHHHHHHTTCEEEEECSCCC-
T ss_pred ccCCCCChHHhCCHHHHHHHHHHHHHHhccCHHHhcccC-CCCceEEEECCCCCCHHHHHHHHHHhhcCcEEEeeHHHhh
Confidence 356788999999999999999988766 66777666555 4578999999999999999999999999999999999997
Q ss_pred hhhhcccchhhHHHHHHHHHhcCCeEEEEcCccccccccccccCCCchhhHHHHHHHHhhhccccc--CCeEEEEecccc
Q 035561 526 AGLWVGQSASNVRELFQTARDLAPVIIFVEDFDLFAGVRGQFIHTKQQDHESFINQLLVELDGFEK--QDGVVLMATTRN 603 (979)
Q Consensus 526 ~~~~vG~~~~~Ir~lF~~A~~~aP~ILfIDEIDaL~~~r~~~~~~~~~~~~~iln~LL~~LDg~~~--~~~ViVIATTN~ 603 (979)
+.+.|.....++.+|..+....|+||||||||.++..+.. ..+....++.+.|+..++++.. ...++||+|||+
T Consensus 186 -~~~~g~~~~~~~~~~~~a~~~~~~il~iDEid~l~~~~~~---~~~~~~~~~~~~ll~~l~~~~~~~~~~v~vI~atn~ 261 (389)
T 3vfd_A 186 -SKYVGEGEKLVRALFAVARELQPSIIFIDQVDSLLCERRE---GEHDASRRLKTEFLIEFDGVQSAGDDRVLVMGATNR 261 (389)
T ss_dssp -------CHHHHHHHHHHHHHSSSEEEEEETGGGGC-----------CTHHHHHHHHHHHHHHHC-----CEEEEEEESC
T ss_pred -ccccchHHHHHHHHHHHHHhcCCeEEEEECchhhcccCCC---ccchHHHHHHHHHHHHhhcccccCCCCEEEEEecCC
Confidence 6789999999999999999999999999999999876642 2334457788899999998754 457999999999
Q ss_pred hhhchhhhhcCCceeeEeccCCCCHHHHHHHHHHHHHhccchhhhhhhhHHHHHHHcCCCCHHHHHHHHHHHhhhhhcc
Q 035561 604 IKQIDEALQRPGRMDRIFNLQKPTQSEREKILRIAAQETMDEELIDLVDWRKVAEKTALLRPIELKLVPVALEGSAFRS 682 (979)
Q Consensus 604 pe~LDpALlRpgRFd~~I~~~~Pd~eeR~~IL~~~l~~~~~~~l~~dvdL~~LA~~T~GfsgaDL~~Lv~aa~~aa~r~ 682 (979)
++.||++++| ||+..++++.|+.++|.+||+.++.... ....+.++..|+..+.||+++||..||+.+...++++
T Consensus 262 ~~~l~~~l~~--R~~~~i~i~~p~~~~r~~il~~~~~~~~--~~l~~~~~~~la~~~~g~~~~~l~~L~~~a~~~~~re 336 (389)
T 3vfd_A 262 PQELDEAVLR--RFIKRVYVSLPNEETRLLLLKNLLCKQG--SPLTQKELAQLARMTDGYSGSDLTALAKDAALGPIRE 336 (389)
T ss_dssp GGGCCHHHHT--TCCEEEECCCCCHHHHHHHHHHHHTTSC--CCSCHHHHHHHHHHTTTCCHHHHHHHHHHHTTHHHHT
T ss_pred chhcCHHHHc--CcceEEEcCCcCHHHHHHHHHHHHHhcC--CCCCHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHh
Confidence 9999999999 9999999999999999999999987642 2234568899999999999999999998777666654
No 30
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=99.96 E-value=2.1e-29 Score=275.43 Aligned_cols=178 Identities=20% Similarity=0.245 Sum_probs=139.5
Q ss_pred cCCCCCceeEecCCCCCChHHHHHHHHHHcCCCEEEeechhhhhhhhcccchhhHHHHHHHH----HhcCCeEEEEcCcc
Q 035561 483 MGARAPRGVLIVGERGTGKTSLALAIAAEARVPVVNVEAQELEAGLWVGQSASNVRELFQTA----RDLAPVIIFVEDFD 558 (979)
Q Consensus 483 lG~~~P~gVLL~GPPGTGKTtLArAlA~elg~~~i~Is~sdL~~~~~vG~~~~~Ir~lF~~A----~~~aP~ILfIDEID 558 (979)
.+.+.|+++|||||||||||++|+++|++++.+++.++|+++. +.+.|.+...++.+|..| +..+||||||||||
T Consensus 31 ~~~~~p~~lLl~GppGtGKT~la~aiA~~l~~~~i~v~~~~l~-~~~~g~~~~~i~~~f~~a~~~~~~~~~~vl~iDEiD 109 (293)
T 3t15_A 31 PNIKVPLILGIWGGKGQGKSFQCELVFRKMGINPIMMSAGELE-SGNAGEPAKLIRQRYREAAEIIRKGNMCCLFINDLD 109 (293)
T ss_dssp TTCCCCSEEEEEECTTSCHHHHHHHHHHHHTCCCEEEEHHHHH-CC---HHHHHHHHHHHHHHHHHTTSSCCCEEEECCC
T ss_pred CCCCCCeEEEEECCCCCCHHHHHHHHHHHhCCCEEEEeHHHhh-hccCchhHHHHHHHHHHHHHHHhcCCCeEEEEechh
Confidence 3678899999999999999999999999999999999999997 678999999999999999 57789999999999
Q ss_pred ccccccccccCCCchhhHHHHHHHHhhhcccc-----------cCCeEEEEecccchhhchhhhhcCCceeeEeccCCCC
Q 035561 559 LFAGVRGQFIHTKQQDHESFINQLLVELDGFE-----------KQDGVVLMATTRNIKQIDEALQRPGRMDRIFNLQKPT 627 (979)
Q Consensus 559 aL~~~r~~~~~~~~~~~~~iln~LL~~LDg~~-----------~~~~ViVIATTN~pe~LDpALlRpgRFd~~I~~~~Pd 627 (979)
.+++.++.. .........+.+.|+..||+.. ...+++||+|||+++.||++++|||||++.+++ |+
T Consensus 110 ~~~~~~~~~-~~~~~~~~~v~~~Ll~~ld~~~~~~~~~~~~~~~~~~v~vI~ttN~~~~ld~al~R~~R~d~~i~~--P~ 186 (293)
T 3t15_A 110 AGAGRMGGT-TQYTVNNQMVNATLMNIADNPTNVQLPGMYNKQENARVPIIVTGNDFSTLYAPLIRDGRMEKFYWA--PT 186 (293)
T ss_dssp ---------------CHHHHHHHHHHHHHCCC-----------CCCCCCEEEECSSCCC--CHHHHHHHEEEEEEC--CC
T ss_pred hhcCCCCCC-ccccchHHHHHHHHHHHhccccccccccccccccCCCcEEEEecCCcccCCHHHhCCCCCceeEeC--cC
Confidence 998755421 1111233456688888887432 446799999999999999999999999999874 69
Q ss_pred HHHHHHHHHHHHHhccchhhhhhhhHHHHHHHcCCCCHHHHHHH
Q 035561 628 QSEREKILRIAAQETMDEELIDLVDWRKVAEKTALLRPIELKLV 671 (979)
Q Consensus 628 ~eeR~~IL~~~l~~~~~~~l~~dvdL~~LA~~T~GfsgaDL~~L 671 (979)
.++|.+|++.++.. .++++..+++.++||+++||..+
T Consensus 187 ~~~r~~Il~~~~~~-------~~~~~~~l~~~~~~~~~~~l~~~ 223 (293)
T 3t15_A 187 REDRIGVCTGIFRT-------DNVPAEDVVKIVDNFPGQSIDFF 223 (293)
T ss_dssp HHHHHHHHHHHHGG-------GCCCHHHHHHHHHHSCSCCHHHH
T ss_pred HHHHHHHHHHhccC-------CCCCHHHHHHHhCCCCcccHHHH
Confidence 99999999988753 35678999999999999998754
No 31
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=99.90 E-value=1.1e-25 Score=260.12 Aligned_cols=206 Identities=18% Similarity=0.176 Sum_probs=146.7
Q ss_pred CCCCCCCCcccCcHHHHHHHHHHHHhhcChhHHHhcCCCCCceeEecCCCCCChHHHHHHHHHHcC--CCEEEeechhhh
Q 035561 448 KNPPIPLKDFASVESMREEINEVVAFLQNPSAFQEMGARAPRGVLIVGERGTGKTSLALAIAAEAR--VPVVNVEAQELE 525 (979)
Q Consensus 448 ~~~~~~f~DIvGleevke~L~eiV~~L~~p~~f~~lG~~~P~gVLL~GPPGTGKTtLArAlA~elg--~~~i~Is~sdL~ 525 (979)
..+...|++++|++++++.+.+++..+.. |..+|+|+||+||||||||++|+++|++++ .+|+.++++++.
T Consensus 30 ~~~~~~~~~iiG~~~~~~~l~~~~~~~~~-------~~~~~~~iLl~GppGtGKT~la~ala~~l~~~~~~~~~~~~~~~ 102 (456)
T 2c9o_A 30 GLAKQAASGLVGQENAREACGVIVELIKS-------KKMAGRAVLLAGPPGTGKTALALAIAQELGSKVPFCPMVGSEVY 102 (456)
T ss_dssp SCBCSEETTEESCHHHHHHHHHHHHHHHT-------TCCTTCEEEEECCTTSSHHHHHHHHHHHHCTTSCEEEEEGGGGC
T ss_pred cChhhchhhccCHHHHHHHHHHHHHHHHh-------CCCCCCeEEEECCCcCCHHHHHHHHHHHhCCCceEEEEeHHHHH
Confidence 35667799999999999999988866532 556789999999999999999999999999 999999999998
Q ss_pred hhhhcccchhhHHHHHHHH---HhcCCeEEEEcCccccccccccccCCCch-hhH---------------HHHHHHHhhh
Q 035561 526 AGLWVGQSASNVRELFQTA---RDLAPVIIFVEDFDLFAGVRGQFIHTKQQ-DHE---------------SFINQLLVEL 586 (979)
Q Consensus 526 ~~~~vG~~~~~Ir~lF~~A---~~~aP~ILfIDEIDaL~~~r~~~~~~~~~-~~~---------------~iln~LL~~L 586 (979)
+.+.|.++. ++++|..| +...||||||||+|+++++|+....++.. ... ++.+.++..+
T Consensus 103 -~~~~~~~~~-~~~~f~~a~~~~~~~~~il~iDEid~l~~~r~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ll~~l 180 (456)
T 2c9o_A 103 -STEIKKTEV-LMENFRRAIGLRIKETKEVYEGEVTELTPCETENPMGGYGKTISHVIIGLKTAKGTKQLKLDPSIFESL 180 (456)
T ss_dssp -CSSSCHHHH-HHHHHHHTEEEEEEEEEEEEEEEEEEEEEC--------------CEEEEEEETTEEEEEEECHHHHHHH
T ss_pred -HHhhhhhHH-HHHHHHHHHhhhhcCCcEEEEechhhcccccCCCCCCCcchHHHHHHHHHhccccchhHhhhHHHHHHH
Confidence 678999887 99999999 77889999999999999887643111110 001 1223344444
Q ss_pred c--ccccCCeEEEEecccchhhchhhhhcCCceee--EeccCCC--CHHHHHHHHHHHHHhccchhhhhhhhHHHHHHHc
Q 035561 587 D--GFEKQDGVVLMATTRNIKQIDEALQRPGRMDR--IFNLQKP--TQSEREKILRIAAQETMDEELIDLVDWRKVAEKT 660 (979)
Q Consensus 587 D--g~~~~~~ViVIATTN~pe~LDpALlRpgRFd~--~I~~~~P--d~eeR~~IL~~~l~~~~~~~l~~dvdL~~LA~~T 660 (979)
+ ++..++.++|+||||+++.+|++++||||||+ .+.+|.| +.++|.+|++.+.. .|++.++..|
T Consensus 181 ~~~~~~~~~~v~i~attn~~~~ld~a~~r~~rfd~~~~~~v~~p~~~~~~R~~il~~~~~----------~dl~~~a~~t 250 (456)
T 2c9o_A 181 QKERVEAGDVIYIEANSGAVKRQGRCDTYATEFDLEAEEYVPLPKGDVHKKKEIIQDVTL----------HDLDVANARP 250 (456)
T ss_dssp HHTTCCTTEEEEEETTTCCEEEEEEETTSCCTTSCSSSSEECCCCSCSEEEEEEEEEEEH----------HHHHHTC---
T ss_pred hhccCCCCCEEEEEcCCCCcccCChhhcCCcccCcceeEecCCCchhHHHHHHHHHHHHH----------HHHHHHHHhC
Confidence 3 34455667888999999999999999999999 5566666 55788888775432 2688999999
Q ss_pred CCCCHHHHHHHHHH
Q 035561 661 ALLRPIELKLVPVA 674 (979)
Q Consensus 661 ~GfsgaDL~~Lv~a 674 (979)
+| |+||.++|..
T Consensus 251 ~g--gadl~~l~~~ 262 (456)
T 2c9o_A 251 QG--GQDILSMMGQ 262 (456)
T ss_dssp --------------
T ss_pred CC--hhHHHHHHhh
Confidence 99 9999999743
No 32
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=99.85 E-value=1.3e-20 Score=204.35 Aligned_cols=206 Identities=17% Similarity=0.241 Sum_probs=159.2
Q ss_pred cccCcHHHHHHHHHHHHhhcChhHHHhcCCCC---CceeEecCCCCCChHHHHHHHHHHc-------CCCEEEeechhhh
Q 035561 456 DFASVESMREEINEVVAFLQNPSAFQEMGARA---PRGVLIVGERGTGKTSLALAIAAEA-------RVPVVNVEAQELE 525 (979)
Q Consensus 456 DIvGleevke~L~eiV~~L~~p~~f~~lG~~~---P~gVLL~GPPGTGKTtLArAlA~el-------g~~~i~Is~sdL~ 525 (979)
+++|++++++.|.+++..+..+..+...|+.. +.++||+||||||||++|+++|+.+ +.+++.++++++.
T Consensus 32 ~i~G~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~vll~G~~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~l~ 111 (309)
T 3syl_A 32 ELIGLKPVKDRIRETAALLLVERARQKLGLAHETPTLHMSFTGNPGTGKTTVALKMAGLLHRLGYVRKGHLVSVTRDDLV 111 (309)
T ss_dssp HSSSCHHHHHHHHHHHHHHHHHHHHHHHTCCSSCCCCEEEEEECTTSSHHHHHHHHHHHHHHTTSSSSCCEEEECGGGTC
T ss_pred HccChHHHHHHHHHHHHHHHhHHHHHHcCCCCCCCCceEEEECCCCCCHHHHHHHHHHHHHhcCCcCCCcEEEEcHHHhh
Confidence 79999999999999998866677777777654 3579999999999999999999988 3489999999997
Q ss_pred hhhhcccchhhHHHHHHHHHhcCCeEEEEcCccccccccccccCCCchhhHHHHHHHHhhhcccccCCeEEEEecccchh
Q 035561 526 AGLWVGQSASNVRELFQTARDLAPVIIFVEDFDLFAGVRGQFIHTKQQDHESFINQLLVELDGFEKQDGVVLMATTRNIK 605 (979)
Q Consensus 526 ~~~~vG~~~~~Ir~lF~~A~~~aP~ILfIDEIDaL~~~r~~~~~~~~~~~~~iln~LL~~LDg~~~~~~ViVIATTN~pe 605 (979)
+.+.|.....++.+|..+ .++||||||+|.+++.++. +......++.|+..|+.. ..++++|+|||.++
T Consensus 112 -~~~~g~~~~~~~~~~~~~---~~~vl~iDEid~l~~~~~~-----~~~~~~~~~~Ll~~l~~~--~~~~~~i~~~~~~~ 180 (309)
T 3syl_A 112 -GQYIGHTAPKTKEVLKRA---MGGVLFIDEAYYLYRPDNE-----RDYGQEAIEILLQVMENN--RDDLVVILAGYADR 180 (309)
T ss_dssp -CSSTTCHHHHHHHHHHHH---TTSEEEEETGGGSCCCC--------CCTHHHHHHHHHHHHHC--TTTCEEEEEECHHH
T ss_pred -hhcccccHHHHHHHHHhc---CCCEEEEEChhhhccCCCc-----ccccHHHHHHHHHHHhcC--CCCEEEEEeCChHH
Confidence 667888888899999887 4689999999999765431 233456778888888753 34578888887753
Q ss_pred -----hchhhhhcCCceeeEeccCCCCHHHHHHHHHHHHHhccchhhhhhhhHHHHHHHc------CCC-CHHHHHHHHH
Q 035561 606 -----QIDEALQRPGRMDRIFNLQKPTQSEREKILRIAAQETMDEELIDLVDWRKVAEKT------ALL-RPIELKLVPV 673 (979)
Q Consensus 606 -----~LDpALlRpgRFd~~I~~~~Pd~eeR~~IL~~~l~~~~~~~l~~dvdL~~LA~~T------~Gf-sgaDL~~Lv~ 673 (979)
.++|+|++ ||+..+.|++|+.+++..|++.+++.... ..++..+..++... ..+ ++.++.+++.
T Consensus 181 ~~~~~~~~~~l~~--R~~~~i~~~~~~~~~~~~il~~~l~~~~~--~~~~~~~~~l~~~~~~~~~~~~~gn~r~l~~~l~ 256 (309)
T 3syl_A 181 MENFFQSNPGFRS--RIAHHIEFPDYSDEELFEIAGHMLDDQNY--QMTPEAETALRAYIGLRRNQPHFANARSIRNALD 256 (309)
T ss_dssp HHHHHHHSTTHHH--HEEEEEEECCCCHHHHHHHHHHHHHHTTC--EECHHHHHHHHHHHHHHTTSSSCCHHHHHHHHHH
T ss_pred HHHHHhhCHHHHH--hCCeEEEcCCcCHHHHHHHHHHHHHHcCC--CCCHHHHHHHHHHHHHhccCCCCCcHHHHHHHHH
Confidence 35799999 99999999999999999999999986421 22333455555542 222 3677777765
Q ss_pred HHh
Q 035561 674 ALE 676 (979)
Q Consensus 674 aa~ 676 (979)
.+.
T Consensus 257 ~a~ 259 (309)
T 3syl_A 257 RAR 259 (309)
T ss_dssp HHH
T ss_pred HHH
Confidence 443
No 33
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=99.80 E-value=7.3e-19 Score=188.51 Aligned_cols=207 Identities=14% Similarity=0.155 Sum_probs=143.9
Q ss_pred CCcccCcHHHHHHHHHHHHhhcChhHHHhcCCCCCceeEecCCCCCChHHHHHHHHHHcCCCEEEeechhhhhhhhcccc
Q 035561 454 LKDFASVESMREEINEVVAFLQNPSAFQEMGARAPRGVLIVGERGTGKTSLALAIAAEARVPVVNVEAQELEAGLWVGQS 533 (979)
Q Consensus 454 f~DIvGleevke~L~eiV~~L~~p~~f~~lG~~~P~gVLL~GPPGTGKTtLArAlA~elg~~~i~Is~sdL~~~~~vG~~ 533 (979)
.+.++|..+..+.+.+....+ .......+...+.++||+||||||||++|+++|++++.+++.+++++...+...+..
T Consensus 32 ~~~~i~~~~~~~~i~~~~~~l--~~~l~~~~~~~~~~vLl~G~~GtGKT~la~~ia~~~~~~~~~i~~~~~~~g~~~~~~ 109 (272)
T 1d2n_A 32 MNGIIKWGDPVTRVLDDGELL--VQQTKNSDRTPLVSVLLEGPPHSGKTALAAKIAEESNFPFIKICSPDKMIGFSETAK 109 (272)
T ss_dssp TTCCCCCSHHHHHHHHHHHHH--HHHHHHCSSCSEEEEEEECSTTSSHHHHHHHHHHHHTCSEEEEECGGGCTTCCHHHH
T ss_pred hcCCCCccHHHHHHHHHHHHH--HHHHhccCCCCCeEEEEECCCCCcHHHHHHHHHHHhCCCEEEEeCHHHhcCCchHHH
Confidence 457888887666655422111 112233356678899999999999999999999999999999998763322222333
Q ss_pred hhhHHHHHHHHHhcCCeEEEEcCccccccccccccCCCchhhHHHHHHHHhhhcccc-cCCeEEEEecccchhhchh-hh
Q 035561 534 ASNVRELFQTARDLAPVIIFVEDFDLFAGVRGQFIHTKQQDHESFINQLLVELDGFE-KQDGVVLMATTRNIKQIDE-AL 611 (979)
Q Consensus 534 ~~~Ir~lF~~A~~~aP~ILfIDEIDaL~~~r~~~~~~~~~~~~~iln~LL~~LDg~~-~~~~ViVIATTN~pe~LDp-AL 611 (979)
...++.+|+.+....+++|||||+|.+++.+.. +......+++.|+..+++.. ....++||+|||.++.+++ .+
T Consensus 110 ~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~----~~~~~~~~l~~L~~~~~~~~~~~~~~~ii~ttn~~~~l~~~~l 185 (272)
T 1d2n_A 110 CQAMKKIFDDAYKSQLSCVVVDDIERLLDYVPI----GPRFSNLVLQALLVLLKKAPPQGRKLLIIGTTSRKDVLQEMEM 185 (272)
T ss_dssp HHHHHHHHHHHHTSSEEEEEECCHHHHTTCBTT----TTBCCHHHHHHHHHHTTCCCSTTCEEEEEEEESCHHHHHHTTC
T ss_pred HHHHHHHHHHHHhcCCcEEEEEChhhhhccCCC----ChhHHHHHHHHHHHHhcCccCCCCCEEEEEecCChhhcchhhh
Confidence 467888999998878999999999999765432 12223456666766777654 3457889999999999998 56
Q ss_pred hcCCceeeEeccCCCCHHHHHHHHHHHHHhccchhhhhhhhHHHHHHHcCCC----CHHHHHHHHHH
Q 035561 612 QRPGRMDRIFNLQKPTQSEREKILRIAAQETMDEELIDLVDWRKVAEKTALL----RPIELKLVPVA 674 (979)
Q Consensus 612 lRpgRFd~~I~~~~Pd~eeR~~IL~~~l~~~~~~~l~~dvdL~~LA~~T~Gf----sgaDL~~Lv~a 674 (979)
++ ||+..+.+|+++. |.+|.+...... ..++.++..+++.+.|| +..++.++++.
T Consensus 186 ~~--rf~~~i~~p~l~~--r~~i~~i~~~~~----~~~~~~~~~l~~~~~g~~~~g~ir~l~~~l~~ 244 (272)
T 1d2n_A 186 LN--AFSTTIHVPNIAT--GEQLLEALELLG----NFKDKERTTIAQQVKGKKVWIGIKKLLMLIEM 244 (272)
T ss_dssp TT--TSSEEEECCCEEE--HHHHHHHHHHHT----CSCHHHHHHHHHHHTTSEEEECHHHHHHHHHH
T ss_pred hc--ccceEEcCCCccH--HHHHHHHHHhcC----CCCHHHHHHHHHHhcCCCccccHHHHHHHHHH
Confidence 66 9999998876665 334444333321 23456788999999997 45555555443
No 34
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=99.79 E-value=2.5e-18 Score=191.01 Aligned_cols=201 Identities=20% Similarity=0.227 Sum_probs=143.9
Q ss_pred CCCCCCCcccCcHHHHHHHHHHHHhhcChhHHHhcCCCCCceeEecCCCCCChHHHHHHHHHHcC--CCEEEeechhhhh
Q 035561 449 NPPIPLKDFASVESMREEINEVVAFLQNPSAFQEMGARAPRGVLIVGERGTGKTSLALAIAAEAR--VPVVNVEAQELEA 526 (979)
Q Consensus 449 ~~~~~f~DIvGleevke~L~eiV~~L~~p~~f~~lG~~~P~gVLL~GPPGTGKTtLArAlA~elg--~~~i~Is~sdL~~ 526 (979)
.|..+|++++|.+.+++.+..+...+.. |..++.++||+||||||||++|+++|++++ .+++.++|..+..
T Consensus 38 ~p~~~~~~ivG~~~~~~~l~~l~~~~~~-------~~~~~~~vLl~GppGtGKT~la~~la~~l~~~~~~~~~~~~~~~~ 110 (368)
T 3uk6_A 38 EPRQASQGMVGQLAARRAAGVVLEMIRE-------GKIAGRAVLIAGQPGTGKTAIAMGMAQALGPDTPFTAIAGSEIFS 110 (368)
T ss_dssp CBCSEETTEESCHHHHHHHHHHHHHHHT-------TCCTTCEEEEEESTTSSHHHHHHHHHHHHCSSCCEEEEEGGGGSC
T ss_pred CcCcchhhccChHHHHHHHHHHHHHHHc-------CCCCCCEEEEECCCCCCHHHHHHHHHHHhcccCCcccccchhhhh
Confidence 4555699999999999998877765533 344568999999999999999999999997 4888888866331
Q ss_pred h------------------------------------------------hhcccchhhHHHHHHHHHhc---------CC
Q 035561 527 G------------------------------------------------LWVGQSASNVRELFQTARDL---------AP 549 (979)
Q Consensus 527 ~------------------------------------------------~~vG~~~~~Ir~lF~~A~~~---------aP 549 (979)
. ...|.....++..|..+... .|
T Consensus 111 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ld~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~g~~~~~~ 190 (368)
T 3uk6_A 111 LEMSKTEALTQAFRRSIGVRIKAGAVHTVSLHEIDVINSRTQGFLALFSGDTGEIKSEVREQINAKVAEWREEGKAEIIP 190 (368)
T ss_dssp SSSCHHHHHHHHHHHSBEECC------CEEHHHHHHHTC----CCSCC-------CHHHHHHHHHHHHHHHHHTC---CB
T ss_pred cccchhHHHHHHHHHHHHHHhhhhccccccHhhhhhhhcccccchhhccCcccccHHHHHHHHHHHHHHhhhhccccccC
Confidence 0 01122245566666665431 27
Q ss_pred eEEEEcCccccccccccccCCCchhhHHHHHHHHhhhcccccCCeEEEEecc-----------cchhhchhhhhcCCcee
Q 035561 550 VIIFVEDFDLFAGVRGQFIHTKQQDHESFINQLLVELDGFEKQDGVVLMATT-----------RNIKQIDEALQRPGRMD 618 (979)
Q Consensus 550 ~ILfIDEIDaL~~~r~~~~~~~~~~~~~iln~LL~~LDg~~~~~~ViVIATT-----------N~pe~LDpALlRpgRFd 618 (979)
+||||||+|.+. ....+.|+..++... ..++++++. |.+..++++|++ ||.
T Consensus 191 ~vl~IDEi~~l~--------------~~~~~~L~~~le~~~--~~~~ii~t~~~~~~i~~t~~~~~~~l~~~l~s--R~~ 252 (368)
T 3uk6_A 191 GVLFIDEVHMLD--------------IESFSFLNRALESDM--APVLIMATNRGITRIRGTSYQSPHGIPIDLLD--RLL 252 (368)
T ss_dssp CEEEEESGGGSB--------------HHHHHHHHHHTTCTT--CCEEEEEESCSEEECBTSSCEEETTCCHHHHT--TEE
T ss_pred ceEEEhhccccC--------------hHHHHHHHHHhhCcC--CCeeeeecccceeeeeccCCCCcccCCHHHHh--hcc
Confidence 899999999873 234556666665432 234444443 457889999999 997
Q ss_pred eEeccCCCCHHHHHHHHHHHHHhccchhhhhhhhHHHHHHHcCCCCHHHHHHHHHHHhh
Q 035561 619 RIFNLQKPTQSEREKILRIAAQETMDEELIDLVDWRKVAEKTALLRPIELKLVPVALEG 677 (979)
Q Consensus 619 ~~I~~~~Pd~eeR~~IL~~~l~~~~~~~l~~dvdL~~LA~~T~GfsgaDL~~Lv~aa~~ 677 (979)
. +.|++|+.+++.+|++..+.... ...++..+..+++.+.+.+++++.++++.+..
T Consensus 253 ~-i~~~~~~~~e~~~il~~~~~~~~--~~~~~~~l~~l~~~~~~G~~r~~~~ll~~a~~ 308 (368)
T 3uk6_A 253 I-VSTTPYSEKDTKQILRIRCEEED--VEMSEDAYTVLTRIGLETSLRYAIQLITAASL 308 (368)
T ss_dssp E-EEECCCCHHHHHHHHHHHHHHTT--CCBCHHHHHHHHHHHHHSCHHHHHHHHHHHHH
T ss_pred E-EEecCCCHHHHHHHHHHHHHHcC--CCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHH
Confidence 6 89999999999999999887642 22345567888998885688888887755443
No 35
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=99.78 E-value=1.6e-18 Score=186.97 Aligned_cols=179 Identities=21% Similarity=0.312 Sum_probs=129.9
Q ss_pred CcccCcHHHHHHHHHHHHh-hcChhHHHhc-CCCCCceeEecCCCCCChHHHHHHHHHHcCCCEEEeechhhhhhhhccc
Q 035561 455 KDFASVESMREEINEVVAF-LQNPSAFQEM-GARAPRGVLIVGERGTGKTSLALAIAAEARVPVVNVEAQELEAGLWVGQ 532 (979)
Q Consensus 455 ~DIvGleevke~L~eiV~~-L~~p~~f~~l-G~~~P~gVLL~GPPGTGKTtLArAlA~elg~~~i~Is~sdL~~~~~vG~ 532 (979)
++++|++++++.|...+.. +..+...... +...|.++||+||||||||++|+++|+.++.+++.++|+++....|.|.
T Consensus 15 ~~i~G~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~l~~~~~~i~~~~~~~~~~~~~ 94 (310)
T 1ofh_A 15 QHIIGQADAKRAVAIALRNRWRRMQLQEPLRHEVTPKNILMIGPTGVGKTEIARRLAKLANAPFIKVEATKFTEVGYVGK 94 (310)
T ss_dssp TTCCSCHHHHHHHHHHHHHHHHTTSSCHHHHHHCCCCCEEEECCTTSSHHHHHHHHHHHHTCCEEEEEGGGGSSCCSGGG
T ss_pred hhcCChHHHHHHHHHHHHHHHhhhhhcccccccCCCceEEEECCCCCCHHHHHHHHHHHhCCCEEEEcchhcccCCccCc
Confidence 4699999999999876654 2211111100 1245789999999999999999999999999999999999864345554
Q ss_pred c-hhhHHHHHHHH-----HhcCCeEEEEcCccccccccccccCCCchhhHHHHHHHHhhhcccc--------cCCeEEEE
Q 035561 533 S-ASNVRELFQTA-----RDLAPVIIFVEDFDLFAGVRGQFIHTKQQDHESFINQLLVELDGFE--------KQDGVVLM 598 (979)
Q Consensus 533 ~-~~~Ir~lF~~A-----~~~aP~ILfIDEIDaL~~~r~~~~~~~~~~~~~iln~LL~~LDg~~--------~~~~ViVI 598 (979)
. ...++.++..+ ....++||||||+|.+.+.... .+.......+.+.|+..|++.. ...++++|
T Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~~~vl~iDEi~~l~~~~~~--~~~~~~~~~~~~~Ll~~le~~~~~~~~~~~~~~~~~~i 172 (310)
T 1ofh_A 95 EVDSIIRDLTDSAGGAIDAVEQNGIVFIDEIDKICKKGEY--SGADVSREGVQRDLLPLVEGSTVSTKHGMVKTDHILFI 172 (310)
T ss_dssp STTHHHHHHHHTTTTCHHHHHHHCEEEEECGGGGSCCSSC--CSSHHHHHHHHHHHHHHHHCCEEEETTEEEECTTCEEE
T ss_pred cHHHHHHHHHHHhhHHHhhccCCCEEEEEChhhcCccccc--cccchhHHHHHHHHHHHhcCCeEecccccccCCcEEEE
Confidence 3 34567776643 1124799999999999765432 1122223345677888777631 23457777
Q ss_pred ec----ccchhhchhhhhcCCceeeEeccCCCCHHHHHHHHHH
Q 035561 599 AT----TRNIKQIDEALQRPGRMDRIFNLQKPTQSEREKILRI 637 (979)
Q Consensus 599 AT----TN~pe~LDpALlRpgRFd~~I~~~~Pd~eeR~~IL~~ 637 (979)
+| ++.+..++|+|++ ||+..+.|++|+.+++.+|++.
T Consensus 173 ~~~~~~~~~~~~l~~~l~~--R~~~~i~~~~~~~~~~~~il~~ 213 (310)
T 1ofh_A 173 ASGAFQVARPSDLIPELQG--RLPIRVELTALSAADFERILTE 213 (310)
T ss_dssp EEECCSSSCGGGSCHHHHH--TCCEEEECCCCCHHHHHHHHHS
T ss_pred EcCCcccCCcccCCHHHHh--hCCceEEcCCcCHHHHHHHHHh
Confidence 77 5678899999999 9999999999999999999984
No 36
>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E*
Probab=99.78 E-value=6.2e-20 Score=211.37 Aligned_cols=171 Identities=16% Similarity=0.211 Sum_probs=80.7
Q ss_pred CcccCcHHHHHHHHHHHHh-hcChhHHHhcCC-CCCceeEecCCCCCChHHHHHHHHHHcCCCEEEeechhhhhhhhccc
Q 035561 455 KDFASVESMREEINEVVAF-LQNPSAFQEMGA-RAPRGVLIVGERGTGKTSLALAIAAEARVPVVNVEAQELEAGLWVGQ 532 (979)
Q Consensus 455 ~DIvGleevke~L~eiV~~-L~~p~~f~~lG~-~~P~gVLL~GPPGTGKTtLArAlA~elg~~~i~Is~sdL~~~~~vG~ 532 (979)
++|+|++++|+.|...+.. ++.+..+..++. .+|+++||+||||||||++|+++|+.++.+|+.++++.+....|+|.
T Consensus 15 ~~IvGqe~ak~~l~~av~~~~~r~~~~~~~~~~~~~~~iLl~GppGtGKT~lar~lA~~l~~~~~~v~~~~~~~~g~vG~ 94 (444)
T 1g41_A 15 QHIIGQADAKRAVAIALRNRWRRMQLQEPLRHEVTPKNILMIGPTGVGKTEIARRLAKLANAPFIKVEATKFTEVGYVGK 94 (444)
T ss_dssp TTCCSCHHHHHHHHHHHHHHHHHHHSCTTTTTTCCCCCEEEECCTTSSHHHHHHHHHHHTTCCEEEEEGGGGC----CCC
T ss_pred HHhCCHHHHHHHHHHHHHHHHhhhccccccccccCCceEEEEcCCCCCHHHHHHHHHHHcCCCceeecchhhcccceeec
Confidence 5799999999999877643 443333333333 25789999999999999999999999999999999999874358885
Q ss_pred -chhhHHHHHHHHHhcCCeEEEEcCccccccccccccCCCchhhHHHHHHHHhhhcccccCCeEEEEec-ccchhhchhh
Q 035561 533 -SASNVRELFQTARDLAPVIIFVEDFDLFAGVRGQFIHTKQQDHESFINQLLVELDGFEKQDGVVLMAT-TRNIKQIDEA 610 (979)
Q Consensus 533 -~~~~Ir~lF~~A~~~aP~ILfIDEIDaL~~~r~~~~~~~~~~~~~iln~LL~~LDg~~~~~~ViVIAT-TN~pe~LDpA 610 (979)
.+..++.+|..|.... ++||++.+.... .+....+++++||..||++.....+ +++ ||+++.||++
T Consensus 95 d~e~~lr~lf~~a~~~~----~~De~d~~~~~~------~~~~e~rvl~~LL~~~dg~~~~~~v--~a~~TN~~~~ld~a 162 (444)
T 1g41_A 95 EVDSIIRDLTDSAMKLV----RQQEIAKNRARA------EDVAEERILDALLPPAKNQWGEVEN--HDSHSSTRQAFRKK 162 (444)
T ss_dssp CTHHHHHHHHHHHHHHH----HHHHHHSCC--------------------------------------------------
T ss_pred cHHHHHHHHHHHHHhcc----hhhhhhhhhccc------hhhHHHHHHHHHHHHhhcccccccc--ccccccCHHHHHHH
Confidence 7899999999998743 589988774321 2234568999999999999766554 455 9999999999
Q ss_pred hhcCCceeeEeccCCCCHH-HHHHHHHH
Q 035561 611 LQRPGRMDRIFNLQKPTQS-EREKILRI 637 (979)
Q Consensus 611 LlRpgRFd~~I~~~~Pd~e-eR~~IL~~ 637 (979)
|+||||||+.|+++.|+.. .|.+|+..
T Consensus 163 L~rggr~D~~i~i~lP~~~~~~~ei~~~ 190 (444)
T 1g41_A 163 LREGQLDDKEIEIDVSAGVSMGVEIMAP 190 (444)
T ss_dssp ----------------------------
T ss_pred HHcCCCcceEEEEcCCCCccchhhhhcC
Confidence 9999999999999999998 78888754
No 37
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=99.77 E-value=5.8e-18 Score=186.38 Aligned_cols=193 Identities=18% Similarity=0.241 Sum_probs=144.8
Q ss_pred CCCCCCCCcccCcHHHHHHHHHHHHhhcChhHHHhcCCCCCceeEecCCCCCChHHHHHHHHHHcCCCEEEeechhhhhh
Q 035561 448 KNPPIPLKDFASVESMREEINEVVAFLQNPSAFQEMGARAPRGVLIVGERGTGKTSLALAIAAEARVPVVNVEAQELEAG 527 (979)
Q Consensus 448 ~~~~~~f~DIvGleevke~L~eiV~~L~~p~~f~~lG~~~P~gVLL~GPPGTGKTtLArAlA~elg~~~i~Is~sdL~~~ 527 (979)
+.++.+|++++|.+++++.|...+..... ....+.++||+||||||||++|+++|+.++.+++.++|+.+.
T Consensus 22 ~~~p~~~~~iiG~~~~~~~l~~~l~~~~~-------~~~~~~~vll~G~~GtGKT~la~~ia~~~~~~~~~~~~~~~~-- 92 (338)
T 3pfi_A 22 SLRPSNFDGYIGQESIKKNLNVFIAAAKK-------RNECLDHILFSGPAGLGKTTLANIISYEMSANIKTTAAPMIE-- 92 (338)
T ss_dssp -CCCCSGGGCCSCHHHHHHHHHHHHHHHH-------TTSCCCCEEEECSTTSSHHHHHHHHHHHTTCCEEEEEGGGCC--
T ss_pred ccCCCCHHHhCChHHHHHHHHHHHHHHHh-------cCCCCCeEEEECcCCCCHHHHHHHHHHHhCCCeEEecchhcc--
Confidence 45667999999999999999887765321 224567899999999999999999999999999999997753
Q ss_pred hhcccchhhHHHHHHHHHhcCCeEEEEcCccccccccccccCCCchhhHHHHHHHHhhhcccc----------------c
Q 035561 528 LWVGQSASNVRELFQTARDLAPVIIFVEDFDLFAGVRGQFIHTKQQDHESFINQLLVELDGFE----------------K 591 (979)
Q Consensus 528 ~~vG~~~~~Ir~lF~~A~~~aP~ILfIDEIDaL~~~r~~~~~~~~~~~~~iln~LL~~LDg~~----------------~ 591 (979)
....+...+.. ...+++|||||||.+. ....+.|+..|+... .
T Consensus 93 -----~~~~~~~~~~~--~~~~~vl~lDEi~~l~--------------~~~~~~Ll~~l~~~~~~~~~~~~~~~~~~~~~ 151 (338)
T 3pfi_A 93 -----KSGDLAAILTN--LSEGDILFIDEIHRLS--------------PAIEEVLYPAMEDYRLDIIIGSGPAAQTIKID 151 (338)
T ss_dssp -----SHHHHHHHHHT--CCTTCEEEEETGGGCC--------------HHHHHHHHHHHHTSCC---------CCCCCCC
T ss_pred -----chhHHHHHHHh--ccCCCEEEEechhhcC--------------HHHHHHHHHHHHhccchhhcccCccccceecC
Confidence 12233334433 2368999999999883 233445555555432 0
Q ss_pred CCeEEEEecccchhhchhhhhcCCceeeEeccCCCCHHHHHHHHHHHHHhccchhhhhhhhHHHHHHHcCCCCHHHHHHH
Q 035561 592 QDGVVLMATTRNIKQIDEALQRPGRMDRIFNLQKPTQSEREKILRIAAQETMDEELIDLVDWRKVAEKTALLRPIELKLV 671 (979)
Q Consensus 592 ~~~ViVIATTN~pe~LDpALlRpgRFd~~I~~~~Pd~eeR~~IL~~~l~~~~~~~l~~dvdL~~LA~~T~GfsgaDL~~L 671 (979)
.+++++|+|||+...++++|++ ||+..+.+++|+.+++..+++.++.... ...++..+..+++.++| ++.++.++
T Consensus 152 ~~~~~~i~atn~~~~l~~~L~~--R~~~~i~l~~~~~~e~~~il~~~~~~~~--~~~~~~~~~~l~~~~~G-~~r~l~~~ 226 (338)
T 3pfi_A 152 LPKFTLIGATTRAGMLSNPLRD--RFGMQFRLEFYKDSELALILQKAALKLN--KTCEEKAALEIAKRSRS-TPRIALRL 226 (338)
T ss_dssp CCCCEEEEEESCGGGSCHHHHT--TCSEEEECCCCCHHHHHHHHHHHHHHTT--CEECHHHHHHHHHTTTT-CHHHHHHH
T ss_pred CCCeEEEEeCCCccccCHHHHh--hcCEEeeCCCcCHHHHHHHHHHHHHhcC--CCCCHHHHHHHHHHHCc-CHHHHHHH
Confidence 1248999999999999999999 9999999999999999999999887642 22344567788887776 45667666
Q ss_pred HHHH
Q 035561 672 PVAL 675 (979)
Q Consensus 672 v~aa 675 (979)
+..+
T Consensus 227 l~~~ 230 (338)
T 3pfi_A 227 LKRV 230 (338)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 6544
No 38
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=99.77 E-value=1.2e-18 Score=194.95 Aligned_cols=218 Identities=17% Similarity=0.176 Sum_probs=144.9
Q ss_pred cccCcHHHHHHHHHHHHh-hcChhHH-H-hcCCCCCceeEecCCCCCChHHHHHHHHHHcCCCEEEeechhhhhhhhccc
Q 035561 456 DFASVESMREEINEVVAF-LQNPSAF-Q-EMGARAPRGVLIVGERGTGKTSLALAIAAEARVPVVNVEAQELEAGLWVGQ 532 (979)
Q Consensus 456 DIvGleevke~L~eiV~~-L~~p~~f-~-~lG~~~P~gVLL~GPPGTGKTtLArAlA~elg~~~i~Is~sdL~~~~~vG~ 532 (979)
.|+|++++++.|...+.. ....... . .....++.++||+||||||||++|+++|+.++.+|+.++|+++....|.|.
T Consensus 16 ~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~vll~GppGtGKT~la~~ia~~~~~~~~~~~~~~l~~~~~~g~ 95 (363)
T 3hws_A 16 YVIGQEQAKKVLAVAVYNHYKRLRNGDTSNGVELGKSNILLIGPTGSGKTLLAETLARLLDVPFTMADATTLTEAGYVGE 95 (363)
T ss_dssp HCCSCHHHHHHHHHHHHHHHHHHHTTSCSSSCCCCCCCEEEECCTTSSHHHHHHHHHHHTTCCEEEEEHHHHTTCHHHHH
T ss_pred hccCHHHHHHHHHHHHHHHHhhhccccccccccCCCCeEEEECCCCCCHHHHHHHHHHHcCCCEEEechHHhcccccccc
Confidence 379999999999877743 1111000 0 001135689999999999999999999999999999999999875557777
Q ss_pred c-hhhHHHHHHHH----HhcCCeEEEEcCccccccccccccCCCchhhHHHHHHHHhhhcccc-----------cCCeEE
Q 035561 533 S-ASNVRELFQTA----RDLAPVIIFVEDFDLFAGVRGQFIHTKQQDHESFINQLLVELDGFE-----------KQDGVV 596 (979)
Q Consensus 533 ~-~~~Ir~lF~~A----~~~aP~ILfIDEIDaL~~~r~~~~~~~~~~~~~iln~LL~~LDg~~-----------~~~~Vi 596 (979)
. ...++.+|..+ ....|+||||||+|.+.+.++....+.+.....+.+.||..|++.. ....++
T Consensus 96 ~~~~~~~~~~~~~~~~~~~~~~~vl~lDEid~l~~~~~~~~~~~~~~~~~~~~~Ll~~leg~~~~~~~~~~~~~~~~~~~ 175 (363)
T 3hws_A 96 DVENIIQKLLQKCDYDVQKAQRGIVYIDQIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTVAAVPPQGGRKHPQQEFL 175 (363)
T ss_dssp HHTHHHHHHHHHTTTCHHHHHHCEEEEECHHHHCCCSSCC---CHHHHHHHHHHHHHHHHCC----------------CC
T ss_pred cHHHHHHHHHHHhhhhHHhcCCcEEEEeChhhhcccccccccccccchHHHHHHHHHHhcCceeeccCccccccCCCceE
Confidence 6 66778888776 4456899999999999877654333333333458889999998531 011234
Q ss_pred EEecccc------------------------------------------------hhh-----chhhhhcCCceeeEecc
Q 035561 597 LMATTRN------------------------------------------------IKQ-----IDEALQRPGRMDRIFNL 623 (979)
Q Consensus 597 VIATTN~------------------------------------------------pe~-----LDpALlRpgRFd~~I~~ 623 (979)
+|+|||. ++. ++|+|++ ||+..+.|
T Consensus 176 ~i~tsn~~~i~~g~~~~l~~~i~~~~~~~~~~gf~~~~~~~~~~~~~~~l~~~v~~~~l~~~~~~~~l~~--R~~~~~~~ 253 (363)
T 3hws_A 176 QVDTSKILFICGGAFAGLDKVISHRVETGSGIGFGATVKAKSDKASEGELLAQVEPEDLIKFGLIPEFIG--RLPVVATL 253 (363)
T ss_dssp CCCTTSSEEEEEECCTTHHHHHHHHHCCCC------------CCSCHHHHHHTCCHHHHHHHTCCHHHHT--TCCEEEEC
T ss_pred EEECCCceEEecCCcHHHHHHHHHhhhccccCCccccccccccchhhHHHHHhCCHHHHHHcCCCHHHhc--ccCeeeec
Confidence 4455554 111 6788888 99999999
Q ss_pred CCCCHHHHHHHHHH----HHHhc-------cchhhhhhhhHHHHHHH--cCCCCHHHHHHHHHHH
Q 035561 624 QKPTQSEREKILRI----AAQET-------MDEELIDLVDWRKVAEK--TALLRPIELKLVPVAL 675 (979)
Q Consensus 624 ~~Pd~eeR~~IL~~----~l~~~-------~~~~l~~dvdL~~LA~~--T~GfsgaDL~~Lv~aa 675 (979)
++|+.+++.+|++. .++.. ......++..++.|++. ...+...+|++++..+
T Consensus 254 ~pl~~~~~~~I~~~~~~~l~~~~~~~~~~~~~~l~~~~~a~~~L~~~~~~~~~gaR~L~~~ie~~ 318 (363)
T 3hws_A 254 NELSEEALIQILKEPKNALTKQYQALFNLEGVDLEFRDEALDAIAKKAMARKTGARGLRSIVEAA 318 (363)
T ss_dssp CCCCHHHHHHHHHSSTTCHHHHHHHHHHTTTCEEEECHHHHHHHHHHHHHTTCTTTTHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHhcCceEEECHHHHHHHHHhhcCCccCchHHHHHHHHH
Confidence 99999999999986 33211 00011233345556542 2344556677665443
No 39
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=99.75 E-value=2.2e-17 Score=180.02 Aligned_cols=198 Identities=16% Similarity=0.163 Sum_probs=145.8
Q ss_pred CCCCCCCCcccCcHHHHHHHHHHHHhhcChhHHHhcCCCCCceeEecCCCCCChHHHHHHHHHHcCCCEEEeechhhhhh
Q 035561 448 KNPPIPLKDFASVESMREEINEVVAFLQNPSAFQEMGARAPRGVLIVGERGTGKTSLALAIAAEARVPVVNVEAQELEAG 527 (979)
Q Consensus 448 ~~~~~~f~DIvGleevke~L~eiV~~L~~p~~f~~lG~~~P~gVLL~GPPGTGKTtLArAlA~elg~~~i~Is~sdL~~~ 527 (979)
+.++.+|++++|.++.++.|.+.+..... ....+.++||+||||||||++|++++++++.+++.++|+.+..
T Consensus 5 ~~~p~~~~~~ig~~~~~~~l~~~l~~~~~-------~~~~~~~vll~G~~GtGKT~la~~i~~~~~~~~~~~~~~~~~~- 76 (324)
T 1hqc_A 5 ALRPKTLDEYIGQERLKQKLRVYLEAAKA-------RKEPLEHLLLFGPPGLGKTTLAHVIAHELGVNLRVTSGPAIEK- 76 (324)
T ss_dssp CCCCCSTTTCCSCHHHHHHHHHHHHHHHH-------HCSCCCCCEEECCTTCCCHHHHHHHHHHHTCCEEEECTTTCCS-
T ss_pred ccCcccHHHhhCHHHHHHHHHHHHHHHHc-------cCCCCCcEEEECCCCCCHHHHHHHHHHHhCCCEEEEeccccCC-
Confidence 45667899999999999999877754321 1234578999999999999999999999999999999987631
Q ss_pred hhcccchhhHHHHHHHHHhcCCeEEEEcCccccccccccccCCCchhhHHHHHHHHhhhcccc----------------c
Q 035561 528 LWVGQSASNVRELFQTARDLAPVIIFVEDFDLFAGVRGQFIHTKQQDHESFINQLLVELDGFE----------------K 591 (979)
Q Consensus 528 ~~vG~~~~~Ir~lF~~A~~~aP~ILfIDEIDaL~~~r~~~~~~~~~~~~~iln~LL~~LDg~~----------------~ 591 (979)
...+...|..+ ...+++|||||+|.+.. ...+.|+..++... .
T Consensus 77 ------~~~l~~~l~~~-~~~~~~l~lDEi~~l~~--------------~~~~~L~~~l~~~~~~~v~~~~~~~~~~~~~ 135 (324)
T 1hqc_A 77 ------PGDLAAILANS-LEEGDILFIDEIHRLSR--------------QAEEHLYPAMEDFVMDIVIGQGPAARTIRLE 135 (324)
T ss_dssp ------HHHHHHHHTTT-CCTTCEEEETTTTSCCH--------------HHHHHHHHHHHHSEEEECCSSSSSCCCEEEE
T ss_pred ------hHHHHHHHHHh-ccCCCEEEEECCccccc--------------chHHHHHHHHHhhhhHHhccccccccccccC
Confidence 12233333321 14689999999998732 12334444444321 1
Q ss_pred CCeEEEEecccchhhchhhhhcCCceeeEeccCCCCHHHHHHHHHHHHHhccchhhhhhhhHHHHHHHcCCCCHHHHHHH
Q 035561 592 QDGVVLMATTRNIKQIDEALQRPGRMDRIFNLQKPTQSEREKILRIAAQETMDEELIDLVDWRKVAEKTALLRPIELKLV 671 (979)
Q Consensus 592 ~~~ViVIATTN~pe~LDpALlRpgRFd~~I~~~~Pd~eeR~~IL~~~l~~~~~~~l~~dvdL~~LA~~T~GfsgaDL~~L 671 (979)
...+++|+|||.+..++++|++ ||+..+.+++|+.+++..+++.++.... ...++..+..|+..+.| .+.++.++
T Consensus 136 ~~~~~~i~~t~~~~~~~~~l~~--R~~~~i~l~~~~~~e~~~~l~~~~~~~~--~~~~~~~~~~l~~~~~G-~~r~l~~~ 210 (324)
T 1hqc_A 136 LPRFTLIGATTRPGLITAPLLS--RFGIVEHLEYYTPEELAQGVMRDARLLG--VRITEEAALEIGRRSRG-TMRVAKRL 210 (324)
T ss_dssp CCCCEEEEEESCCSSCSCSTTT--TCSCEEECCCCCHHHHHHHHHHHHHTTT--CCCCHHHHHHHHHHSCS-CHHHHHHH
T ss_pred CCCEEEEEeCCCcccCCHHHHh--cccEEEecCCCCHHHHHHHHHHHHHhcC--CCCCHHHHHHHHHHccC-CHHHHHHH
Confidence 1357899999999999999998 9988999999999999999999887542 12344567888999877 55788888
Q ss_pred HHHHhhhh
Q 035561 672 PVALEGSA 679 (979)
Q Consensus 672 v~aa~~aa 679 (979)
++.+...+
T Consensus 211 l~~~~~~a 218 (324)
T 1hqc_A 211 FRRVRDFA 218 (324)
T ss_dssp HHHHTTTS
T ss_pred HHHHHHHH
Confidence 76665444
No 40
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=99.73 E-value=1.2e-17 Score=182.97 Aligned_cols=180 Identities=17% Similarity=0.224 Sum_probs=131.5
Q ss_pred CCCCCCCCcccCcHHHHHHHHHHHHhhcChhHHHhcCCCCCceeEecCCCCCChHHHHHHHHHHcCCCEEEeechhhhhh
Q 035561 448 KNPPIPLKDFASVESMREEINEVVAFLQNPSAFQEMGARAPRGVLIVGERGTGKTSLALAIAAEARVPVVNVEAQELEAG 527 (979)
Q Consensus 448 ~~~~~~f~DIvGleevke~L~eiV~~L~~p~~f~~lG~~~P~gVLL~GPPGTGKTtLArAlA~elg~~~i~Is~sdL~~~ 527 (979)
+.++.+|++++|.+++++.|...+. ....|..+|++||||||||++|+++|++++.+++++++++..
T Consensus 19 k~rP~~~~~ivg~~~~~~~l~~~l~-----------~~~~~~~~L~~G~~G~GKT~la~~la~~l~~~~~~i~~~~~~-- 85 (324)
T 3u61_B 19 KYRPSTIDECILPAFDKETFKSITS-----------KGKIPHIILHSPSPGTGKTTVAKALCHDVNADMMFVNGSDCK-- 85 (324)
T ss_dssp HSCCCSTTTSCCCHHHHHHHHHHHH-----------TTCCCSEEEECSSTTSSHHHHHHHHHHHTTEEEEEEETTTCC--
T ss_pred hhCCCCHHHHhCcHHHHHHHHHHHH-----------cCCCCeEEEeeCcCCCCHHHHHHHHHHHhCCCEEEEcccccC--
Confidence 5677899999999999998887664 234567789999999999999999999999999999987642
Q ss_pred hhcccchhhHHHHHHHHHhc-----CCeEEEEcCccccccccccccCCCchhhHHHHHHHHhhhcccccCCeEEEEeccc
Q 035561 528 LWVGQSASNVRELFQTARDL-----APVIIFVEDFDLFAGVRGQFIHTKQQDHESFINQLLVELDGFEKQDGVVLMATTR 602 (979)
Q Consensus 528 ~~vG~~~~~Ir~lF~~A~~~-----aP~ILfIDEIDaL~~~r~~~~~~~~~~~~~iln~LL~~LDg~~~~~~ViVIATTN 602 (979)
...++..+...... .++||||||+|.+.+ ....+.|+..++... .++.+|+|||
T Consensus 86 ------~~~i~~~~~~~~~~~~~~~~~~vliiDEi~~l~~-------------~~~~~~L~~~le~~~--~~~~iI~~~n 144 (324)
T 3u61_B 86 ------IDFVRGPLTNFASAASFDGRQKVIVIDEFDRSGL-------------AESQRHLRSFMEAYS--SNCSIIITAN 144 (324)
T ss_dssp ------HHHHHTHHHHHHHBCCCSSCEEEEEEESCCCGGG-------------HHHHHHHHHHHHHHG--GGCEEEEEES
T ss_pred ------HHHHHHHHHHHHhhcccCCCCeEEEEECCcccCc-------------HHHHHHHHHHHHhCC--CCcEEEEEeC
Confidence 23455544443332 579999999998841 223445555555432 4567888999
Q ss_pred chhhchhhhhcCCceeeEeccCCCCHHHHHHHHHHHHHhccc-----hhhhhh-hhHHHHHHHcCCCC
Q 035561 603 NIKQIDEALQRPGRMDRIFNLQKPTQSEREKILRIAAQETMD-----EELIDL-VDWRKVAEKTALLR 664 (979)
Q Consensus 603 ~pe~LDpALlRpgRFd~~I~~~~Pd~eeR~~IL~~~l~~~~~-----~~l~~d-vdL~~LA~~T~Gfs 664 (979)
.+..+++++++ ||. .+.|++|+.++|.+|++..++.... ....++ ..+..+++.+.|-.
T Consensus 145 ~~~~l~~~l~s--R~~-~i~~~~~~~~e~~~il~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~gd~ 209 (324)
T 3u61_B 145 NIDGIIKPLQS--RCR-VITFGQPTDEDKIEMMKQMIRRLTEICKHEGIAIADMKVVAALVKKNFPDF 209 (324)
T ss_dssp SGGGSCTTHHH--HSE-EEECCCCCHHHHHHHHHHHHHHHHHHHHHHTCCBSCHHHHHHHHHHTCSCT
T ss_pred CccccCHHHHh--hCc-EEEeCCCCHHHHHHHHHHHHHHHHHHHHHcCCCCCcHHHHHHHHHhCCCCH
Confidence 99999999999 884 7999999999998887766543210 011222 45677888777633
No 41
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=99.72 E-value=1.2e-17 Score=197.48 Aligned_cols=166 Identities=23% Similarity=0.300 Sum_probs=119.8
Q ss_pred CCcccCcHHHHHHHHHHHHhh-cChhHHHhcCCCCCceeEecCCCCCChHHHHHHHHHHcCCCEEEeechhhhh------
Q 035561 454 LKDFASVESMREEINEVVAFL-QNPSAFQEMGARAPRGVLIVGERGTGKTSLALAIAAEARVPVVNVEAQELEA------ 526 (979)
Q Consensus 454 f~DIvGleevke~L~eiV~~L-~~p~~f~~lG~~~P~gVLL~GPPGTGKTtLArAlA~elg~~~i~Is~sdL~~------ 526 (979)
.+|++|++++++.+.+.+..- .+. .. .+.++||+||||||||++|+++|+.++.++..++++.+..
T Consensus 80 ~~di~G~~~vk~~i~~~~~l~~~~~------~~-~g~~vll~Gp~GtGKTtlar~ia~~l~~~~~~i~~~~~~~~~~~~g 152 (543)
T 3m6a_A 80 DEEHHGLEKVKERILEYLAVQKLTK------SL-KGPILCLAGPPGVGKTSLAKSIAKSLGRKFVRISLGGVRDESEIRG 152 (543)
T ss_dssp HHHCSSCHHHHHHHHHHHHHHHHSS------SC-CSCEEEEESSSSSSHHHHHHHHHHHHTCEEEEECCCC---------
T ss_pred HHHhccHHHHHHHHHHHHHHHHhcc------cC-CCCEEEEECCCCCCHHHHHHHHHHhcCCCeEEEEecccchhhhhhh
Confidence 357999999999997765431 111 11 4568999999999999999999999999999999876532
Q ss_pred --hhhcccchhhHHHHHHHHHhcCCeEEEEcCccccccccccccCCCchhhHHHHHHHHhhhccccc-------------
Q 035561 527 --GLWVGQSASNVRELFQTARDLAPVIIFVEDFDLFAGVRGQFIHTKQQDHESFINQLLVELDGFEK------------- 591 (979)
Q Consensus 527 --~~~vG~~~~~Ir~lF~~A~~~aP~ILfIDEIDaL~~~r~~~~~~~~~~~~~iln~LL~~LDg~~~------------- 591 (979)
..|+|.....+...|..+....| ||||||+|.+.+.+. ....+.|+..||....
T Consensus 153 ~~~~~ig~~~~~~~~~~~~a~~~~~-vl~lDEid~l~~~~~----------~~~~~~LL~~ld~~~~~~~~~~~~~~~~~ 221 (543)
T 3m6a_A 153 HRRTYVGAMPGRIIQGMKKAGKLNP-VFLLDEIDKMSSDFR----------GDPSSAMLEVLDPEQNSSFSDHYIEETFD 221 (543)
T ss_dssp -----------CHHHHHHTTCSSSE-EEEEEESSSCC-------------------CCGGGTCTTTTTBCCCSSSCCCCB
T ss_pred HHHHHhccCchHHHHHHHHhhccCC-EEEEhhhhhhhhhhc----------cCHHHHHHHHHhhhhcceeecccCCeeec
Confidence 14667777788888888876555 999999999965432 1234567777764321
Q ss_pred CCeEEEEecccchhhchhhhhcCCceeeEeccCCCCHHHHHHHHHHHHH
Q 035561 592 QDGVVLMATTRNIKQIDEALQRPGRMDRIFNLQKPTQSEREKILRIAAQ 640 (979)
Q Consensus 592 ~~~ViVIATTN~pe~LDpALlRpgRFd~~I~~~~Pd~eeR~~IL~~~l~ 640 (979)
...+++|+|||.++.+||+|++ ||+ .|.|+.|+.+++..|++.++.
T Consensus 222 ~~~v~iI~ttN~~~~l~~aL~~--R~~-vi~~~~~~~~e~~~Il~~~l~ 267 (543)
T 3m6a_A 222 LSKVLFIATANNLATIPGPLRD--RME-IINIAGYTEIEKLEIVKDHLL 267 (543)
T ss_dssp CSSCEEEEECSSTTTSCHHHHH--HEE-EEECCCCCHHHHHHHHHHTHH
T ss_pred ccceEEEeccCccccCCHHHHh--hcc-eeeeCCCCHHHHHHHHHHHHH
Confidence 1568999999999999999999 995 789999999999999999873
No 42
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=99.71 E-value=3.9e-17 Score=161.62 Aligned_cols=161 Identities=19% Similarity=0.309 Sum_probs=117.6
Q ss_pred CCCCCcccCcHHHHHHHHHHHHhhcChhHHHhcCCCCCceeEecCCCCCChHHHHHHHHHHc----------CCCEEEee
Q 035561 451 PIPLKDFASVESMREEINEVVAFLQNPSAFQEMGARAPRGVLIVGERGTGKTSLALAIAAEA----------RVPVVNVE 520 (979)
Q Consensus 451 ~~~f~DIvGleevke~L~eiV~~L~~p~~f~~lG~~~P~gVLL~GPPGTGKTtLArAlA~el----------g~~~i~Is 520 (979)
+.+|++++|.++..+.+.+.+ . ...+.+++|+||||||||++|+++++.+ +.+++.++
T Consensus 18 ~~~~~~~~g~~~~~~~l~~~l---~---------~~~~~~~ll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (195)
T 1jbk_A 18 QGKLDPVIGRDEEIRRTIQVL---Q---------RRTKNNPVLIGEPGVGKTAIVEGLAQRIINGEVPEGLKGRRVLALD 85 (195)
T ss_dssp TTCSCCCCSCHHHHHHHHHHH---T---------SSSSCEEEEECCTTSCHHHHHHHHHHHHHHTCSCGGGTTCEEEEEC
T ss_pred hccccccccchHHHHHHHHHH---h---------cCCCCceEEECCCCCCHHHHHHHHHHHHHhCCCchhhcCCcEEEee
Confidence 467999999998777666433 2 1346789999999999999999999986 78999999
Q ss_pred chhhhh-hhhcccchhhHHHHHHHHH-hcCCeEEEEcCccccccccccccCCCchhhHHHHHHHHhhhcccccCCeEEEE
Q 035561 521 AQELEA-GLWVGQSASNVRELFQTAR-DLAPVIIFVEDFDLFAGVRGQFIHTKQQDHESFINQLLVELDGFEKQDGVVLM 598 (979)
Q Consensus 521 ~sdL~~-~~~vG~~~~~Ir~lF~~A~-~~aP~ILfIDEIDaL~~~r~~~~~~~~~~~~~iln~LL~~LDg~~~~~~ViVI 598 (979)
+.++.. ..+.+.....++.++..+. ...|+||+|||+|.+.+.+.. .........+..++ + ..++.+|
T Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~iDe~~~l~~~~~~---~~~~~~~~~l~~~~---~----~~~~~~i 155 (195)
T 1jbk_A 86 MGALVAGAKYRGEFEERLKGVLNDLAKQEGNVILFIDELHTMVGAGKA---DGAMDAGNMLKPAL---A----RGELHCV 155 (195)
T ss_dssp HHHHHTTTCSHHHHHHHHHHHHHHHHHSTTTEEEEEETGGGGTT---------CCCCHHHHHHHH---H----TTSCCEE
T ss_pred HHHHhccCCccccHHHHHHHHHHHHhhcCCCeEEEEeCHHHHhccCcc---cchHHHHHHHHHhh---c----cCCeEEE
Confidence 988752 2345666677888888664 345899999999999754421 11122233343333 2 2456788
Q ss_pred ecccchh-----hchhhhhcCCceeeEeccCCCCHHHHHHHHH
Q 035561 599 ATTRNIK-----QIDEALQRPGRMDRIFNLQKPTQSEREKILR 636 (979)
Q Consensus 599 ATTN~pe-----~LDpALlRpgRFd~~I~~~~Pd~eeR~~IL~ 636 (979)
++||.++ .+++++++ ||+ .+.++.|+.++|.+||+
T Consensus 156 ~~~~~~~~~~~~~~~~~l~~--r~~-~i~~~~p~~~~~~~il~ 195 (195)
T 1jbk_A 156 GATTLDEYRQYIEKDAALER--RFQ-KVFVAEPSVEDTIAILR 195 (195)
T ss_dssp EEECHHHHHHHTTTCHHHHT--TEE-EEECCCCCHHHHHTTCC
T ss_pred EeCCHHHHHHHHhcCHHHHH--Hhc-eeecCCCCHHHHHHHhC
Confidence 8888876 68999999 998 69999999999998763
No 43
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=99.70 E-value=5.9e-16 Score=156.68 Aligned_cols=185 Identities=17% Similarity=0.186 Sum_probs=130.9
Q ss_pred CCCCCCCCcccCcHHHHHHHHHHHHhhcChhHHHhcCCCCCceeEecCCCCCChHHHHHHHHHHc-----CCCEEEeech
Q 035561 448 KNPPIPLKDFASVESMREEINEVVAFLQNPSAFQEMGARAPRGVLIVGERGTGKTSLALAIAAEA-----RVPVVNVEAQ 522 (979)
Q Consensus 448 ~~~~~~f~DIvGleevke~L~eiV~~L~~p~~f~~lG~~~P~gVLL~GPPGTGKTtLArAlA~el-----g~~~i~Is~s 522 (979)
+.++..|++++|.++.++.|.+.+.. ..+.+++|+||||||||++|+++++++ ..+++.++++
T Consensus 10 ~~~p~~~~~~~g~~~~~~~l~~~l~~------------~~~~~~ll~G~~G~GKT~l~~~l~~~~~~~~~~~~~~~~~~~ 77 (226)
T 2chg_A 10 KYRPRTLDEVVGQDEVIQRLKGYVER------------KNIPHLLFSGPPGTGKTATAIALARDLFGENWRDNFIEMNAS 77 (226)
T ss_dssp HTSCSSGGGCCSCHHHHHHHHHHHHT------------TCCCCEEEECSTTSSHHHHHHHHHHHHHGGGGGGGEEEEETT
T ss_pred hcCCCCHHHHcCcHHHHHHHHHHHhC------------CCCCeEEEECCCCCCHHHHHHHHHHHHhccccccceEEeccc
Confidence 35677899999999998888766532 123359999999999999999999986 4678888876
Q ss_pred hhhhhhhcccchhhHHHHHHHHH------hcCCeEEEEcCccccccccccccCCCchhhHHHHHHHHhhhcccccCCeEE
Q 035561 523 ELEAGLWVGQSASNVRELFQTAR------DLAPVIIFVEDFDLFAGVRGQFIHTKQQDHESFINQLLVELDGFEKQDGVV 596 (979)
Q Consensus 523 dL~~~~~vG~~~~~Ir~lF~~A~------~~aP~ILfIDEIDaL~~~r~~~~~~~~~~~~~iln~LL~~LDg~~~~~~Vi 596 (979)
+... ...++..+.... ...+++|+|||+|.+.. ...+.|+..++.. ..++.
T Consensus 78 ~~~~-------~~~~~~~~~~~~~~~~~~~~~~~vliiDe~~~l~~--------------~~~~~l~~~l~~~--~~~~~ 134 (226)
T 2chg_A 78 DERG-------IDVVRHKIKEFARTAPIGGAPFKIIFLDEADALTA--------------DAQAALRRTMEMY--SKSCR 134 (226)
T ss_dssp CTTC-------HHHHHHHHHHHHTSCCSTTCSCEEEEEETGGGSCH--------------HHHHHHHHHHHHT--TTTEE
T ss_pred cccC-------hHHHHHHHHHHhcccCCCccCceEEEEeChhhcCH--------------HHHHHHHHHHHhc--CCCCe
Confidence 5431 122222222222 24689999999998732 2234455555542 34567
Q ss_pred EEecccchhhchhhhhcCCceeeEeccCCCCHHHHHHHHHHHHHhccchhhhhhhhHHHHHHHcCCCCHHHHHHHHH
Q 035561 597 LMATTRNIKQIDEALQRPGRMDRIFNLQKPTQSEREKILRIAAQETMDEELIDLVDWRKVAEKTALLRPIELKLVPV 673 (979)
Q Consensus 597 VIATTN~pe~LDpALlRpgRFd~~I~~~~Pd~eeR~~IL~~~l~~~~~~~l~~dvdL~~LA~~T~GfsgaDL~~Lv~ 673 (979)
+|+|||.+..+++++.+ ||. .+.+++|+.+++.++++..+..... ..++..+..+++.+.| .+..+.++++
T Consensus 135 ~i~~~~~~~~~~~~l~~--r~~-~i~~~~~~~~~~~~~l~~~~~~~~~--~~~~~~~~~l~~~~~g-~~r~l~~~l~ 205 (226)
T 2chg_A 135 FILSCNYVSRIIEPIQS--RCA-VFRFKPVPKEAMKKRLLEICEKEGV--KITEDGLEALIYISGG-DFRKAINALQ 205 (226)
T ss_dssp EEEEESCGGGSCHHHHT--TSE-EEECCCCCHHHHHHHHHHHHHHHTC--CBCHHHHHHHHHHHTT-CHHHHHHHHH
T ss_pred EEEEeCChhhcCHHHHH--hCc-eeecCCCCHHHHHHHHHHHHHHcCC--CCCHHHHHHHHHHcCC-CHHHHHHHHH
Confidence 88889999999999999 887 8999999999999999998865321 2344567788888877 4444444443
No 44
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.68 E-value=9.9e-17 Score=188.28 Aligned_cols=225 Identities=16% Similarity=0.222 Sum_probs=146.4
Q ss_pred hcccCCCCCCCCcccCcHHHHHHHHHHHHhhc--ChhHHHhcCC---CCCceeEecCCCCCChHHHHHHHHHHcCCCEEE
Q 035561 444 MKRVKNPPIPLKDFASVESMREEINEVVAFLQ--NPSAFQEMGA---RAPRGVLIVGERGTGKTSLALAIAAEARVPVVN 518 (979)
Q Consensus 444 l~~v~~~~~~f~DIvGleevke~L~eiV~~L~--~p~~f~~lG~---~~P~gVLL~GPPGTGKTtLArAlA~elg~~~i~ 518 (979)
++..++++.+|+|++|.+++++.|.+.+.... .+..|...|. +.++++||+||||||||++|+++|++++.+++.
T Consensus 28 lW~ekyrP~~~~dliG~~~~~~~L~~~l~~~~~~~~~~~~~~g~~~~~~~~~lLL~GppGtGKTtla~~la~~l~~~~i~ 107 (516)
T 1sxj_A 28 LWTVKYAPTNLQQVCGNKGSVMKLKNWLANWENSKKNSFKHAGKDGSGVFRAAMLYGPPGIGKTTAAHLVAQELGYDILE 107 (516)
T ss_dssp CHHHHTCCSSGGGCCSCHHHHHHHHHHHHTHHHHHHTTTCCCCTTSTTSCSEEEEECSTTSSHHHHHHHHHHHTTCEEEE
T ss_pred CcccccCCCCHHHhcCCHHHHHHHHHHHHHhHhhchhhccccCccCCCCCcEEEEECCCCCCHHHHHHHHHHHcCCCEEE
Confidence 44557788899999999999999988776421 1222222333 356899999999999999999999999999999
Q ss_pred eechhhhhhhhcccc------hhhHHHHHHHH-----HhcCCeEEEEcCccccccccccccCCCchhhHHHHHHHHhhhc
Q 035561 519 VEAQELEAGLWVGQS------ASNVRELFQTA-----RDLAPVIIFVEDFDLFAGVRGQFIHTKQQDHESFINQLLVELD 587 (979)
Q Consensus 519 Is~sdL~~~~~vG~~------~~~Ir~lF~~A-----~~~aP~ILfIDEIDaL~~~r~~~~~~~~~~~~~iln~LL~~LD 587 (979)
++|+++......... ...++.+|..+ ....++||||||+|.+.... . ..++.|+..++
T Consensus 108 in~s~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~vliIDEid~l~~~~--------~---~~l~~L~~~l~ 176 (516)
T 1sxj_A 108 QNASDVRSKTLLNAGVKNALDNMSVVGYFKHNEEAQNLNGKHFVIIMDEVDGMSGGD--------R---GGVGQLAQFCR 176 (516)
T ss_dssp ECTTSCCCHHHHHHTGGGGTTBCCSTTTTTC----CCSSTTSEEEEECSGGGCCTTS--------T---THHHHHHHHHH
T ss_pred EeCCCcchHHHHHHHHHHHhccccHHHHHhhhhhhhhccCCCeEEEEECCCccchhh--------H---HHHHHHHHHHH
Confidence 999886422111000 01133344443 23468999999999985421 1 12344444444
Q ss_pred ccccCCeEEEEecccchhhchhhhhcCCceeeEeccCCCCHHHHHHHHHHHHHhccchhhhhhhhHHHHHHHcCCCCHHH
Q 035561 588 GFEKQDGVVLMATTRNIKQIDEALQRPGRMDRIFNLQKPTQSEREKILRIAAQETMDEELIDLVDWRKVAEKTALLRPIE 667 (979)
Q Consensus 588 g~~~~~~ViVIATTN~pe~LDpALlRpgRFd~~I~~~~Pd~eeR~~IL~~~l~~~~~~~l~~dvdL~~LA~~T~GfsgaD 667 (979)
. ....+++++++.....+++ ++| +...+.|++|+.+++.++|+..+..... ..++..+..|++.+.| |
T Consensus 177 ~--~~~~iIli~~~~~~~~l~~-l~~---r~~~i~f~~~~~~~~~~~L~~i~~~~~~--~i~~~~l~~la~~s~G----d 244 (516)
T 1sxj_A 177 K--TSTPLILICNERNLPKMRP-FDR---VCLDIQFRRPDANSIKSRLMTIAIREKF--KLDPNVIDRLIQTTRG----D 244 (516)
T ss_dssp H--CSSCEEEEESCTTSSTTGG-GTT---TSEEEECCCCCHHHHHHHHHHHHHHHTC--CCCTTHHHHHHHHTTT----C
T ss_pred h--cCCCEEEEEcCCCCccchh-hHh---ceEEEEeCCCCHHHHHHHHHHHHHHcCC--CCCHHHHHHHHHHcCC----c
Confidence 3 2334555555544445554 444 4468999999999999999887765321 1334457888988765 6
Q ss_pred HHHHHHHHhhhhhccCCCChHHHh
Q 035561 668 LKLVPVALEGSAFRSKFLDTDELM 691 (979)
Q Consensus 668 L~~Lv~aa~~aa~r~~~~s~~ei~ 691 (979)
+..+++.++..+.....++.+++.
T Consensus 245 iR~~i~~L~~~~~~~~~It~~~v~ 268 (516)
T 1sxj_A 245 IRQVINLLSTISTTTKTINHENIN 268 (516)
T ss_dssp HHHHHHHHTHHHHHSSCCCTTHHH
T ss_pred HHHHHHHHHHHHhcCCCCchHHHH
Confidence 666666666555555556655543
No 45
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=99.68 E-value=5e-16 Score=189.75 Aligned_cols=202 Identities=18% Similarity=0.199 Sum_probs=143.4
Q ss_pred CCCCCcccCcHHHHHHHHHHHHhhcChhHHHhcCCCCCceeEecCCCCCChHHHHHHHHHHc----------CCCEEEee
Q 035561 451 PIPLKDFASVESMREEINEVVAFLQNPSAFQEMGARAPRGVLIVGERGTGKTSLALAIAAEA----------RVPVVNVE 520 (979)
Q Consensus 451 ~~~f~DIvGleevke~L~eiV~~L~~p~~f~~lG~~~P~gVLL~GPPGTGKTtLArAlA~el----------g~~~i~Is 520 (979)
+-+|++++|.++..+.+.+++ . ...+.++||+||||||||++|+++|+.+ +.+++.++
T Consensus 182 ~~~~d~~iGr~~~i~~l~~~l---~---------~~~~~~vlL~G~~GtGKT~la~~la~~l~~~~v~~~~~~~~~~~~~ 249 (758)
T 1r6b_X 182 VGGIDPLIGREKELERAIQVL---C---------RRRKNNPLLVGESGVGKTAIAEGLAWRIVQGDVPEVMADCTIYSLD 249 (758)
T ss_dssp TTCSCCCCSCHHHHHHHHHHH---T---------SSSSCEEEEECCTTSSHHHHHHHHHHHHHHTCSCGGGTTCEEEECC
T ss_pred cCCCCCccCCHHHHHHHHHHH---h---------ccCCCCeEEEcCCCCCHHHHHHHHHHHHHhCCCChhhcCCEEEEEc
Confidence 457999999998777765443 2 2356789999999999999999999987 66788888
Q ss_pred chhhhh-hhhcccchhhHHHHHHHHHhcCCeEEEEcCccccccccccccCCCchhhHHHHHHHHhhhcccccCCeEEEEe
Q 035561 521 AQELEA-GLWVGQSASNVRELFQTARDLAPVIIFVEDFDLFAGVRGQFIHTKQQDHESFINQLLVELDGFEKQDGVVLMA 599 (979)
Q Consensus 521 ~sdL~~-~~~vG~~~~~Ir~lF~~A~~~aP~ILfIDEIDaL~~~r~~~~~~~~~~~~~iln~LL~~LDg~~~~~~ViVIA 599 (979)
++.+.. ..+.|..+..++.+|+.+....++||||||+|.+.+.++. ........+.|...+ ....+.+|+
T Consensus 250 ~~~l~~~~~~~g~~e~~l~~~~~~~~~~~~~iL~IDEi~~l~~~~~~-----~~~~~~~~~~L~~~l----~~~~~~~I~ 320 (758)
T 1r6b_X 250 IGSLLAGTKYRGDFEKRFKALLKQLEQDTNSILFIDEIHTIIGAGAA-----SGGQVDAANLIKPLL----SSGKIRVIG 320 (758)
T ss_dssp CC---CCCCCSSCHHHHHHHHHHHHSSSSCEEEEETTTTTTTTSCCS-----SSCHHHHHHHHSSCS----SSCCCEEEE
T ss_pred HHHHhccccccchHHHHHHHHHHHHHhcCCeEEEEechHHHhhcCCC-----CcchHHHHHHHHHHH----hCCCeEEEE
Confidence 887763 3578888999999999998888999999999999765432 111222333333333 345678888
Q ss_pred cccchh-----hchhhhhcCCceeeEeccCCCCHHHHHHHHHHHHHhccc--hhhhhhhhHHHHHHHcCC-----CCHHH
Q 035561 600 TTRNIK-----QIDEALQRPGRMDRIFNLQKPTQSEREKILRIAAQETMD--EELIDLVDWRKVAEKTAL-----LRPIE 667 (979)
Q Consensus 600 TTN~pe-----~LDpALlRpgRFd~~I~~~~Pd~eeR~~IL~~~l~~~~~--~~l~~dvdL~~LA~~T~G-----fsgaD 667 (979)
+||.++ .+|++|.| ||+ .+.|+.|+.++|.+||+.++..... .....+..+..++..+.| +.+..
T Consensus 321 at~~~~~~~~~~~d~aL~~--Rf~-~i~v~~p~~~e~~~il~~l~~~~~~~~~v~~~~~al~~~~~~s~~~i~~~~lp~~ 397 (758)
T 1r6b_X 321 STTYQEFSNIFEKDRALAR--RFQ-KIDITEPSIEETVQIINGLKPKYEAHHDVRYTAKAVRAAVELAVKYINDRHLPDK 397 (758)
T ss_dssp EECHHHHHCCCCCTTSSGG--GEE-EEECCCCCHHHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHCTTSCTTHH
T ss_pred EeCchHHhhhhhcCHHHHh--Cce-EEEcCCCCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhhhhcccccCchH
Confidence 888765 47899999 998 7999999999999999987764210 011223345666665554 45556
Q ss_pred HHHHHHHHh
Q 035561 668 LKLVPVALE 676 (979)
Q Consensus 668 L~~Lv~aa~ 676 (979)
+..++..+.
T Consensus 398 ~i~lld~a~ 406 (758)
T 1r6b_X 398 AIDVIDEAG 406 (758)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 666665443
No 46
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20
Probab=99.68 E-value=4e-16 Score=175.14 Aligned_cols=180 Identities=18% Similarity=0.237 Sum_probs=115.9
Q ss_pred CcccCcHHHHHHHHHHHHh-hcChhHH-----------------HhcCCCCCceeEecCCCCCChHHHHHHHHHHcCCCE
Q 035561 455 KDFASVESMREEINEVVAF-LQNPSAF-----------------QEMGARAPRGVLIVGERGTGKTSLALAIAAEARVPV 516 (979)
Q Consensus 455 ~DIvGleevke~L~eiV~~-L~~p~~f-----------------~~lG~~~P~gVLL~GPPGTGKTtLArAlA~elg~~~ 516 (979)
++|+|++++++.|...+.. +...... ..-....+.++||+||||||||++|+++|+.++.++
T Consensus 21 ~~viGq~~ak~~l~~~~~~~~~~~~~g~~~~~~~~~~~~~p~~~~~~~~~~~~~ill~Gp~GtGKT~la~~la~~l~~~~ 100 (376)
T 1um8_A 21 NYVIGQEQAKKVFSVAVYNHYKRLSFKEKLKKQDNQDSNVELEHLEEVELSKSNILLIGPTGSGKTLMAQTLAKHLDIPI 100 (376)
T ss_dssp TTCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHCSHHHHHHHHHHHHTTCCCCCEEEECCTTSSHHHHHHHHHHHTTCCE
T ss_pred hHccCcHHHHHHHHHHHHHHHHHHHhhhhhhhccccccccccccccccccCCCCEEEECCCCCCHHHHHHHHHHHhCCCE
Confidence 3589999999999877632 2111100 011234567899999999999999999999999999
Q ss_pred EEeechhhhhhhhcccc-hhhHHHHHHHHH----hcCCeEEEEcCccccccccccccCCCchhhHHHHHHHHhhhcccc-
Q 035561 517 VNVEAQELEAGLWVGQS-ASNVRELFQTAR----DLAPVIIFVEDFDLFAGVRGQFIHTKQQDHESFINQLLVELDGFE- 590 (979)
Q Consensus 517 i~Is~sdL~~~~~vG~~-~~~Ir~lF~~A~----~~aP~ILfIDEIDaL~~~r~~~~~~~~~~~~~iln~LL~~LDg~~- 590 (979)
+.++|+.+....+.|.. ...+..++..+. ...++||||||+|.+...++......+.....+.+.|+..|++..
T Consensus 101 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~vl~iDEi~~l~~~~~~~~~~~~~~~~~~~~~Ll~~le~~~~ 180 (376)
T 1um8_A 101 AISDATSLTEAGYVGEDVENILTRLLQASDWNVQKAQKGIVFIDEIDKISRLSENRSITRDVSGEGVQQALLKIVEGSLV 180 (376)
T ss_dssp EEEEGGGCC--------CTHHHHHHHHHTTTCHHHHTTSEEEEETGGGC--------------CHHHHHHHHHHHHCCEE
T ss_pred EEecchhhhhcCcCCccHHHHHHHHHhhccchhhhcCCeEEEEcCHHHHhhhcCCCceecccchHHHHHHHHHHhhccce
Confidence 99999987644455554 445666665542 346899999999999876543222222222346778888887531
Q ss_pred ------------------cCCeEEEEecccc-----------------------------------------hhhchhhh
Q 035561 591 ------------------KQDGVVLMATTRN-----------------------------------------IKQIDEAL 611 (979)
Q Consensus 591 ------------------~~~~ViVIATTN~-----------------------------------------pe~LDpAL 611 (979)
...++++|+|||. ...+.|.|
T Consensus 181 ~~~~~~~~~~~~~~~~~i~t~n~~~I~~~~~~~l~~~l~~R~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~~~~p~l 260 (376)
T 1um8_A 181 NIPPKGGRKHPEGNFIQIDTSDILFICAGAFDGLAEIIKKRTTQNVLGFTQEKMSKKEQEAILHLVQTHDLVTYGLIPEL 260 (376)
T ss_dssp C---------------CEECTTCEEEEEECCTTHHHHTTTSCSSCCCSCCCSSCCTTTTTTSGGGCCHHHHHHTTCCHHH
T ss_pred ecccccccccCCcceEEEecCCeEEEecCCHHHHHHHHHHHhcccccCCCchhhhccchhHHHhhcCHHHHhhcCCChHH
Confidence 1234567777762 11245777
Q ss_pred hcCCceeeEeccCCCCHHHHHHHHH
Q 035561 612 QRPGRMDRIFNLQKPTQSEREKILR 636 (979)
Q Consensus 612 lRpgRFd~~I~~~~Pd~eeR~~IL~ 636 (979)
++ ||+..+.|++++.++...|+.
T Consensus 261 ~~--R~~~~i~~~~l~~~~l~~i~~ 283 (376)
T 1um8_A 261 IG--RLPVLSTLDSISLEAMVDILQ 283 (376)
T ss_dssp HT--TCCEEEECCCCCHHHHHHHHH
T ss_pred hc--CCCceeeccCCCHHHHHHHHh
Confidence 77 898899999999999999997
No 47
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=99.66 E-value=1.3e-15 Score=155.56 Aligned_cols=189 Identities=16% Similarity=0.202 Sum_probs=135.4
Q ss_pred CCCCCCCCcccCcHHHHHHHHHHHHhhcChhHHHhcCCCCCceeEecCCCCCChHHHHHHHHHHcCCCE-----------
Q 035561 448 KNPPIPLKDFASVESMREEINEVVAFLQNPSAFQEMGARAPRGVLIVGERGTGKTSLALAIAAEARVPV----------- 516 (979)
Q Consensus 448 ~~~~~~f~DIvGleevke~L~eiV~~L~~p~~f~~lG~~~P~gVLL~GPPGTGKTtLArAlA~elg~~~----------- 516 (979)
+.++..|++++|.++.++.|.+.+.. ...|..++|+||||||||++++++++.++...
T Consensus 16 ~~~p~~~~~~~g~~~~~~~l~~~l~~-----------~~~~~~~ll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~~ 84 (250)
T 1njg_A 16 KWRPQTFADVVGQEHVLTALANGLSL-----------GRIHHAYLFSGTRGVGKTSIARLLAKGLNCETGITATPCGVCD 84 (250)
T ss_dssp HTCCCSGGGCCSCHHHHHHHHHHHHH-----------TCCCSEEEEECSTTSCHHHHHHHHHHHHHCTTCSCSSCCSCSH
T ss_pred ccCCccHHHHhCcHHHHHHHHHHHHc-----------CCCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCcccH
Confidence 45667899999999999888866532 12345799999999999999999999875321
Q ss_pred -------------EEeechhhhhhhhcccchhhHHHHHHHHH----hcCCeEEEEcCccccccccccccCCCchhhHHHH
Q 035561 517 -------------VNVEAQELEAGLWVGQSASNVRELFQTAR----DLAPVIIFVEDFDLFAGVRGQFIHTKQQDHESFI 579 (979)
Q Consensus 517 -------------i~Is~sdL~~~~~vG~~~~~Ir~lF~~A~----~~aP~ILfIDEIDaL~~~r~~~~~~~~~~~~~il 579 (979)
+.+++.. ......++.++..+. ...|.+|+|||+|.+. ....
T Consensus 85 ~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~vlviDe~~~l~--------------~~~~ 143 (250)
T 1njg_A 85 NCREIEQGRFVDLIEIDAAS-------RTKVEDTRDLLDNVQYAPARGRFKVYLIDEVHMLS--------------RHSF 143 (250)
T ss_dssp HHHHHHTTCCSSEEEEETTC-------GGGHHHHHHHHHSCCCSCSSSSSEEEEEETGGGSC--------------HHHH
T ss_pred HHHHHhccCCcceEEecCcc-------cccHHHHHHHHHHhhhchhcCCceEEEEECccccc--------------HHHH
Confidence 2221111 112334555665543 2347999999999772 2345
Q ss_pred HHHHhhhcccccCCeEEEEecccchhhchhhhhcCCceeeEeccCCCCHHHHHHHHHHHHHhccchhhhhhhhHHHHHHH
Q 035561 580 NQLLVELDGFEKQDGVVLMATTRNIKQIDEALQRPGRMDRIFNLQKPTQSEREKILRIAAQETMDEELIDLVDWRKVAEK 659 (979)
Q Consensus 580 n~LL~~LDg~~~~~~ViVIATTN~pe~LDpALlRpgRFd~~I~~~~Pd~eeR~~IL~~~l~~~~~~~l~~dvdL~~LA~~ 659 (979)
+.|+..++.. ..++.+|++||.+..+++++++ |+ ..+.+++|+.++..++++.++.... ...+...+..+++.
T Consensus 144 ~~l~~~l~~~--~~~~~~i~~t~~~~~~~~~l~~--r~-~~i~l~~l~~~e~~~~l~~~~~~~~--~~~~~~~~~~l~~~ 216 (250)
T 1njg_A 144 NALLKTLEEP--PEHVKFLLATTDPQKLPVTILS--RC-LQFHLKALDVEQIRHQLEHILNEEH--IAHEPRALQLLARA 216 (250)
T ss_dssp HHHHHHHHSC--CTTEEEEEEESCGGGSCHHHHT--TS-EEEECCCCCHHHHHHHHHHHHHHTT--CCBCHHHHHHHHHH
T ss_pred HHHHHHHhcC--CCceEEEEEeCChHhCCHHHHH--Hh-hhccCCCCCHHHHHHHHHHHHHhcC--CCCCHHHHHHHHHH
Confidence 5666666543 3467888889999999999988 65 6899999999999999999887542 12334457889999
Q ss_pred cCCCCHHHHHHHHHHHh
Q 035561 660 TALLRPIELKLVPVALE 676 (979)
Q Consensus 660 T~GfsgaDL~~Lv~aa~ 676 (979)
+.| .+..+.++++.+.
T Consensus 217 ~~G-~~~~~~~~~~~~~ 232 (250)
T 1njg_A 217 AEG-SLRDALSLTDQAI 232 (250)
T ss_dssp HTT-CHHHHHHHHHHHH
T ss_pred cCC-CHHHHHHHHHHHH
Confidence 988 7888888876553
No 48
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=99.66 E-value=1.6e-15 Score=167.91 Aligned_cols=207 Identities=17% Similarity=0.173 Sum_probs=139.0
Q ss_pred CCCCcccCcHHHHHHHHHHHHhhcChhHHHhcCCCCCceeEecCCCCCChHHHHHHHHHHc---------CCCEEEeech
Q 035561 452 IPLKDFASVESMREEINEVVAFLQNPSAFQEMGARAPRGVLIVGERGTGKTSLALAIAAEA---------RVPVVNVEAQ 522 (979)
Q Consensus 452 ~~f~DIvGleevke~L~eiV~~L~~p~~f~~lG~~~P~gVLL~GPPGTGKTtLArAlA~el---------g~~~i~Is~s 522 (979)
...++++|.++..+.|...+.... ....+.+++|+||||||||++|+++++++ +.+++.++|.
T Consensus 16 ~~p~~~~gr~~~~~~l~~~l~~~~--------~~~~~~~vll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~~i~~~ 87 (387)
T 2v1u_A 16 YVPDVLPHREAELRRLAEVLAPAL--------RGEKPSNALLYGLTGTGKTAVARLVLRRLEARASSLGVLVKPIYVNAR 87 (387)
T ss_dssp CCCSCCTTCHHHHHHHHHTTGGGT--------SSCCCCCEEECBCTTSSHHHHHHHHHHHHHHHHHHHTCCEEEEEEETT
T ss_pred cCCCCCCCHHHHHHHHHHHHHHHH--------cCCCCCcEEEECCCCCCHHHHHHHHHHHHHHHHhccCCCeEEEEEECC
Confidence 445899999988888876543221 12456789999999999999999999988 8899999987
Q ss_pred hhhhhh---------------hcccchhh-HHHHHHHHHhc-CCeEEEEcCccccccccccccCCCchhhHHHHHHHHhh
Q 035561 523 ELEAGL---------------WVGQSASN-VRELFQTARDL-APVIIFVEDFDLFAGVRGQFIHTKQQDHESFINQLLVE 585 (979)
Q Consensus 523 dL~~~~---------------~vG~~~~~-Ir~lF~~A~~~-aP~ILfIDEIDaL~~~r~~~~~~~~~~~~~iln~LL~~ 585 (979)
...+.. ..|.+... +..++...... .|+||||||+|.+...+ .....+..++..
T Consensus 88 ~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlilDEi~~l~~~~---------~~~~~l~~l~~~ 158 (387)
T 2v1u_A 88 HRETPYRVASAIAEAVGVRVPFTGLSVGEVYERLVKRLSRLRGIYIIVLDEIDFLPKRP---------GGQDLLYRITRI 158 (387)
T ss_dssp TSCSHHHHHHHHHHHHSCCCCSSCCCHHHHHHHHHHHHTTSCSEEEEEEETTTHHHHST---------THHHHHHHHHHG
T ss_pred cCCCHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHhccCCeEEEEEccHhhhcccC---------CCChHHHhHhhc
Confidence 532110 11222222 34444444333 48999999999885321 123556666666
Q ss_pred hcccccCCeEEEEecccch---hhchhhhhcCCceee-EeccCCCCHHHHHHHHHHHHHhccchhhhhhhhHHHHHHHcC
Q 035561 586 LDGFEKQDGVVLMATTRNI---KQIDEALQRPGRMDR-IFNLQKPTQSEREKILRIAAQETMDEELIDLVDWRKVAEKTA 661 (979)
Q Consensus 586 LDg~~~~~~ViVIATTN~p---e~LDpALlRpgRFd~-~I~~~~Pd~eeR~~IL~~~l~~~~~~~l~~dvdL~~LA~~T~ 661 (979)
++......++.+|++||.+ +.+++++++ ||.. .+.|++|+.+++.+|++.++.........++..+..+++.+.
T Consensus 159 ~~~~~~~~~~~~I~~t~~~~~~~~l~~~l~~--r~~~~~i~l~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~l~~~~~ 236 (387)
T 2v1u_A 159 NQELGDRVWVSLVGITNSLGFVENLEPRVKS--SLGEVELVFPPYTAPQLRDILETRAEEAFNPGVLDPDVVPLCAALAA 236 (387)
T ss_dssp GGCC-----CEEEEECSCSTTSSSSCHHHHT--TTTSEECCBCCCCHHHHHHHHHHHHHHHBCTTTBCSSHHHHHHHHHH
T ss_pred hhhcCCCceEEEEEEECCCchHhhhCHHHHh--cCCCeEEeeCCCCHHHHHHHHHHHHHhhccCCCCCHHHHHHHHHHHH
Confidence 5544314578888899887 678999998 8875 899999999999999999987522112334445677888877
Q ss_pred ---CCCHHHHHHHHHHHhhh
Q 035561 662 ---LLRPIELKLVPVALEGS 678 (979)
Q Consensus 662 ---GfsgaDL~~Lv~aa~~a 678 (979)
| .+..+.++++.+...
T Consensus 237 ~~~G-~~r~~~~~l~~a~~~ 255 (387)
T 2v1u_A 237 REHG-DARRALDLLRVAGEI 255 (387)
T ss_dssp SSSC-CHHHHHHHHHHHHHH
T ss_pred Hhcc-CHHHHHHHHHHHHHH
Confidence 6 445555665554433
No 49
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=99.65 E-value=1.3e-15 Score=176.27 Aligned_cols=190 Identities=21% Similarity=0.266 Sum_probs=132.1
Q ss_pred CCCCCCCcccCcHHHH---HHHHHHHHhhcChhHHHhcCCCCCceeEecCCCCCChHHHHHHHHHHcCCCEEEeechhhh
Q 035561 449 NPPIPLKDFASVESMR---EEINEVVAFLQNPSAFQEMGARAPRGVLIVGERGTGKTSLALAIAAEARVPVVNVEAQELE 525 (979)
Q Consensus 449 ~~~~~f~DIvGleevk---e~L~eiV~~L~~p~~f~~lG~~~P~gVLL~GPPGTGKTtLArAlA~elg~~~i~Is~sdL~ 525 (979)
.++.+|++++|++.++ ..|...+.. + .+.++||+||||||||++|+++|+.++.+++.+++...
T Consensus 20 ~rP~~l~~ivGq~~~~~~~~~L~~~i~~----------~--~~~~vLL~GppGtGKTtlAr~ia~~~~~~f~~l~a~~~- 86 (447)
T 3pvs_A 20 MRPENLAQYIGQQHLLAAGKPLPRAIEA----------G--HLHSMILWGPPGTGKTTLAEVIARYANADVERISAVTS- 86 (447)
T ss_dssp TCCCSTTTCCSCHHHHSTTSHHHHHHHH----------T--CCCEEEEECSTTSSHHHHHHHHHHHTTCEEEEEETTTC-
T ss_pred hCCCCHHHhCCcHHHHhchHHHHHHHHc----------C--CCcEEEEECCCCCcHHHHHHHHHHHhCCCeEEEEeccC-
Confidence 4567899999999998 556554432 1 12579999999999999999999999999999987542
Q ss_pred hhhhcccchhhHHHHHHHHHh----cCCeEEEEcCccccccccccccCCCchhhHHHHHHHHhhhcccccCCeEEEEecc
Q 035561 526 AGLWVGQSASNVRELFQTARD----LAPVIIFVEDFDLFAGVRGQFIHTKQQDHESFINQLLVELDGFEKQDGVVLMATT 601 (979)
Q Consensus 526 ~~~~vG~~~~~Ir~lF~~A~~----~aP~ILfIDEIDaL~~~r~~~~~~~~~~~~~iln~LL~~LDg~~~~~~ViVIATT 601 (979)
+...++.+|..+.. ..++||||||||.+... ..+.|+..++. ...++|.+||
T Consensus 87 -------~~~~ir~~~~~a~~~~~~~~~~iLfIDEI~~l~~~--------------~q~~LL~~le~---~~v~lI~att 142 (447)
T 3pvs_A 87 -------GVKEIREAIERARQNRNAGRRTILFVDEVHRFNKS--------------QQDAFLPHIED---GTITFIGATT 142 (447)
T ss_dssp -------CHHHHHHHHHHHHHHHHTTCCEEEEEETTTCC--------------------CCHHHHHT---TSCEEEEEES
T ss_pred -------CHHHHHHHHHHHHHhhhcCCCcEEEEeChhhhCHH--------------HHHHHHHHHhc---CceEEEecCC
Confidence 23456777777653 36899999999988431 12345555543 2334444444
Q ss_pred cc-hhhchhhhhcCCceeeEeccCCCCHHHHHHHHHHHHHhcc-----chhhhhhhhHHHHHHHcCCCCHHHHHHHHHHH
Q 035561 602 RN-IKQIDEALQRPGRMDRIFNLQKPTQSEREKILRIAAQETM-----DEELIDLVDWRKVAEKTALLRPIELKLVPVAL 675 (979)
Q Consensus 602 N~-pe~LDpALlRpgRFd~~I~~~~Pd~eeR~~IL~~~l~~~~-----~~~l~~dvdL~~LA~~T~GfsgaDL~~Lv~aa 675 (979)
.+ ...++++|++ |+. .+.+++|+.+++..+++..+.... .....++..+..|++.++| ....+.+++..+
T Consensus 143 ~n~~~~l~~aL~s--R~~-v~~l~~l~~edi~~il~~~l~~~~~~~~~~~~~i~~~al~~L~~~~~G-d~R~lln~Le~a 218 (447)
T 3pvs_A 143 ENPSFELNSALLS--RAR-VYLLKSLSTEDIEQVLTQAMEDKTRGYGGQDIVLPDETRRAIAELVNG-DARRALNTLEMM 218 (447)
T ss_dssp SCGGGSSCHHHHT--TEE-EEECCCCCHHHHHHHHHHHHHCTTTSSTTSSEECCHHHHHHHHHHHCS-CHHHHHHHHHHH
T ss_pred CCcccccCHHHhC--cee-EEeeCCcCHHHHHHHHHHHHHHHhhhhccccCcCCHHHHHHHHHHCCC-CHHHHHHHHHHH
Confidence 34 4589999999 875 778999999999999999987621 1122345568888998877 445555555444
Q ss_pred hhhh
Q 035561 676 EGSA 679 (979)
Q Consensus 676 ~~aa 679 (979)
...+
T Consensus 219 ~~~a 222 (447)
T 3pvs_A 219 ADMA 222 (447)
T ss_dssp HHHS
T ss_pred HHhc
Confidence 4333
No 50
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=99.65 E-value=1.4e-15 Score=166.94 Aligned_cols=195 Identities=18% Similarity=0.220 Sum_probs=130.1
Q ss_pred CCCCCCCccc-CcH--HHHHHHHHHHHhhcChhHHHhcCCCCCceeEecCCCCCChHHHHHHHHHHc---CCCEEEeech
Q 035561 449 NPPIPLKDFA-SVE--SMREEINEVVAFLQNPSAFQEMGARAPRGVLIVGERGTGKTSLALAIAAEA---RVPVVNVEAQ 522 (979)
Q Consensus 449 ~~~~~f~DIv-Gle--evke~L~eiV~~L~~p~~f~~lG~~~P~gVLL~GPPGTGKTtLArAlA~el---g~~~i~Is~s 522 (979)
.+..+|++++ |.. .....+..++ ..+ ...+.+++|+||||||||++|+++++++ +.+++++++.
T Consensus 5 ~~~~~f~~fv~g~~~~~a~~~~~~~~---~~~-------~~~~~~lll~G~~GtGKT~la~~i~~~~~~~~~~~~~i~~~ 74 (324)
T 1l8q_A 5 NPKYTLENFIVGEGNRLAYEVVKEAL---ENL-------GSLYNPIFIYGSVGTGKTHLLQAAGNEAKKRGYRVIYSSAD 74 (324)
T ss_dssp CTTCCSSSCCCCTTTHHHHHHHHHHH---HTT-------TTSCSSEEEECSSSSSHHHHHHHHHHHHHHTTCCEEEEEHH
T ss_pred CCCCCcccCCCCCcHHHHHHHHHHHH---hCc-------CCCCCeEEEECCCCCcHHHHHHHHHHHHHHCCCEEEEEEHH
Confidence 4567899997 533 3333333332 222 1345789999999999999999999998 8999999998
Q ss_pred hhhhhhhcccchhhHHHHHHHHHhcCCeEEEEcCccccccccccccCCCchhhHHHHHHHHhhhcccccCCeEEEEeccc
Q 035561 523 ELEAGLWVGQSASNVRELFQTARDLAPVIIFVEDFDLFAGVRGQFIHTKQQDHESFINQLLVELDGFEKQDGVVLMATTR 602 (979)
Q Consensus 523 dL~~~~~vG~~~~~Ir~lF~~A~~~aP~ILfIDEIDaL~~~r~~~~~~~~~~~~~iln~LL~~LDg~~~~~~ViVIATTN 602 (979)
++. ..+.+.........|..... .+++|||||++.+..++ .....++..++.....+..+|+++++
T Consensus 75 ~~~-~~~~~~~~~~~~~~~~~~~~-~~~vL~iDEi~~l~~~~------------~~~~~l~~~l~~~~~~~~~iii~~~~ 140 (324)
T 1l8q_A 75 DFA-QAMVEHLKKGTINEFRNMYK-SVDLLLLDDVQFLSGKE------------RTQIEFFHIFNTLYLLEKQIILASDR 140 (324)
T ss_dssp HHH-HHHHHHHHHTCHHHHHHHHH-TCSEEEEECGGGGTTCH------------HHHHHHHHHHHHHHHTTCEEEEEESS
T ss_pred HHH-HHHHHHHHcCcHHHHHHHhc-CCCEEEEcCcccccCCh------------HHHHHHHHHHHHHHHCCCeEEEEecC
Confidence 875 33333332222233433332 48999999999885321 11222333333322334567777777
Q ss_pred chh---hchhhhhcCCcee--eEeccCCCCHHHHHHHHHHHHHhccchhhhhhhhHHHHHHHcCCCCHHHHHHHHHH
Q 035561 603 NIK---QIDEALQRPGRMD--RIFNLQKPTQSEREKILRIAAQETMDEELIDLVDWRKVAEKTALLRPIELKLVPVA 674 (979)
Q Consensus 603 ~pe---~LDpALlRpgRFd--~~I~~~~Pd~eeR~~IL~~~l~~~~~~~l~~dvdL~~LA~~T~GfsgaDL~~Lv~a 674 (979)
.+. .++++|++ ||+ ..+.+++ +.++|.+|++.++.... ...++..+..|++.+ | ...++.+++..
T Consensus 141 ~~~~l~~l~~~L~s--R~~~~~~i~l~~-~~~e~~~il~~~~~~~~--~~l~~~~l~~l~~~~-g-~~r~l~~~l~~ 210 (324)
T 1l8q_A 141 HPQKLDGVSDRLVS--RFEGGILVEIEL-DNKTRFKIIKEKLKEFN--LELRKEVIDYLLENT-K-NVREIEGKIKL 210 (324)
T ss_dssp CGGGCTTSCHHHHH--HHHTSEEEECCC-CHHHHHHHHHHHHHHTT--CCCCHHHHHHHHHHC-S-SHHHHHHHHHH
T ss_pred ChHHHHHhhhHhhh--cccCceEEEeCC-CHHHHHHHHHHHHHhcC--CCCCHHHHHHHHHhC-C-CHHHHHHHHHH
Confidence 777 68999999 886 7899999 99999999999987542 123344578888888 5 55666665443
No 51
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=99.65 E-value=8.7e-16 Score=166.43 Aligned_cols=204 Identities=17% Similarity=0.176 Sum_probs=135.0
Q ss_pred CcccCcHHHHHHHHHHHHhhcChhHHHhcCCCCCceeEecCCCCCChHHHHHHHHHHc---CCCEEEeechhhhhhh---
Q 035561 455 KDFASVESMREEINEVVAFLQNPSAFQEMGARAPRGVLIVGERGTGKTSLALAIAAEA---RVPVVNVEAQELEAGL--- 528 (979)
Q Consensus 455 ~DIvGleevke~L~eiV~~L~~p~~f~~lG~~~P~gVLL~GPPGTGKTtLArAlA~el---g~~~i~Is~sdL~~~~--- 528 (979)
++++|++.+++.|...+......- ....+++.++||+||||||||++|+++|+.+ +.+++.++|+.+....
T Consensus 17 ~~i~G~~~~~~~l~~~i~~~~~~~---~~~~~~~~~~ll~G~~GtGKt~la~~la~~~~~~~~~~~~~~~~~~~~~~~~~ 93 (311)
T 4fcw_A 17 KRVVGQDEAIRAVADAIRRARAGL---KDPNRPIGSFLFLGPTGVGKTELAKTLAATLFDTEEAMIRIDMTEYMEKHAVS 93 (311)
T ss_dssp TTCCSCHHHHHHHHHHHHHHHHTC---SCTTSCSEEEEEESCSSSSHHHHHHHHHHHHHSCGGGEEEEEGGGCCSTTHHH
T ss_pred hhcCCHHHHHHHHHHHHHHHhcCC---CCCCCCceEEEEECCCCcCHHHHHHHHHHHHcCCCcceEEeecccccccccHH
Confidence 468899999999887765421000 0001223479999999999999999999998 5679999998764211
Q ss_pred -hcccc-----hhhHHHHHHHHHhcCCeEEEEcCccccccccccccCCCchhhHHHHHHHHhhhcccc--c-------CC
Q 035561 529 -WVGQS-----ASNVRELFQTARDLAPVIIFVEDFDLFAGVRGQFIHTKQQDHESFINQLLVELDGFE--K-------QD 593 (979)
Q Consensus 529 -~vG~~-----~~~Ir~lF~~A~~~aP~ILfIDEIDaL~~~r~~~~~~~~~~~~~iln~LL~~LDg~~--~-------~~ 593 (979)
..|.. ......+........++||||||+|.+. ....+.|+..|+... . -.
T Consensus 94 ~l~g~~~~~~~~~~~~~~~~~~~~~~~~vl~lDEi~~l~--------------~~~~~~Ll~~le~~~~~~~~~~~~~~~ 159 (311)
T 4fcw_A 94 RLIGAPPGYVGYEEGGQLTEAVRRRPYSVILFDAIEKAH--------------PDVFNILLQMLDDGRLTDSHGRTVDFR 159 (311)
T ss_dssp HHHCCCTTSTTTTTCCHHHHHHHHCSSEEEEEETGGGSC--------------HHHHHHHHHHHHHSEEECTTSCEEECT
T ss_pred HhcCCCCccccccccchHHHHHHhCCCeEEEEeChhhcC--------------HHHHHHHHHHHhcCEEEcCCCCEEECC
Confidence 11110 0000122233334455999999999872 235566666665421 1 13
Q ss_pred eEEEEecccc--------------------------hhhchhhhhcCCceeeEeccCCCCHHHHHHHHHHHHHhccc---
Q 035561 594 GVVLMATTRN--------------------------IKQIDEALQRPGRMDRIFNLQKPTQSEREKILRIAAQETMD--- 644 (979)
Q Consensus 594 ~ViVIATTN~--------------------------pe~LDpALlRpgRFd~~I~~~~Pd~eeR~~IL~~~l~~~~~--- 644 (979)
++++|+|||. ...++|+|++ ||+..+.+++|+.+++..|++.+++....
T Consensus 160 ~~iiI~ttn~~~~~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~--R~~~~~~~~p~~~~~~~~i~~~~l~~~~~~~~ 237 (311)
T 4fcw_A 160 NTVIIMTSNLGSPLILEGLQKGWPYERIRDEVFKVLQQHFRPEFLN--RLDEIVVFRPLTKEQIRQIVEIQMSYLRARLA 237 (311)
T ss_dssp TEEEEEEESTTHHHHHTTTTSCCCSSTHHHHTHHHHHHHSCHHHHT--TCSEEEECCCCCHHHHHHHHHHHTHHHHHHHH
T ss_pred CcEEEEecccCHHHHHhhhcccccHHHHHHHHHHHHHHhCCHHHHh--cCCeEEEeCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 5779999998 5678899998 99999999999999999999998765311
Q ss_pred ----hhhhhhhhHHHHHHHcC--CCCHHHHHHHHHHHhh
Q 035561 645 ----EELIDLVDWRKVAEKTA--LLRPIELKLVPVALEG 677 (979)
Q Consensus 645 ----~~l~~dvdL~~LA~~T~--GfsgaDL~~Lv~aa~~ 677 (979)
....++..+..|++..- ..+..+|.++++.+..
T Consensus 238 ~~~~~~~~~~~~~~~l~~~~~~~~gn~R~L~~~i~~~~~ 276 (311)
T 4fcw_A 238 EKRISLELTEAAKDFLAERGYDPVFGARPLRRVIQRELE 276 (311)
T ss_dssp TTTCEEEECHHHHHHHHHHSCBTTTBTTTHHHHHHHHTH
T ss_pred hCCcEEEeCHHHHHHHHHhCCCccCCchhHHHHHHHHHH
Confidence 11233445666766544 4567778777655443
No 52
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=99.64 E-value=1e-15 Score=151.66 Aligned_cols=153 Identities=18% Similarity=0.336 Sum_probs=111.0
Q ss_pred CCCCCcccCcHHHHHHHHHHHHhhcChhHHHhcCCCCCceeEecCCCCCChHHHHHHHHHHc----------CCCEEEee
Q 035561 451 PIPLKDFASVESMREEINEVVAFLQNPSAFQEMGARAPRGVLIVGERGTGKTSLALAIAAEA----------RVPVVNVE 520 (979)
Q Consensus 451 ~~~f~DIvGleevke~L~eiV~~L~~p~~f~~lG~~~P~gVLL~GPPGTGKTtLArAlA~el----------g~~~i~Is 520 (979)
+.+|++++|.++..+.+.+.+ .. ..+.++||+||||||||++|+++++.+ +.+++.++
T Consensus 18 ~~~~~~~~g~~~~~~~l~~~l---~~---------~~~~~vll~G~~G~GKT~la~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (187)
T 2p65_A 18 AGKLDPVIGRDTEIRRAIQIL---SR---------RTKNNPILLGDPGVGKTAIVEGLAIKIVQGDVPDSLKGRKLVSLD 85 (187)
T ss_dssp TTCSCCCCSCHHHHHHHHHHH---TS---------SSSCEEEEESCGGGCHHHHHHHHHHHHHTTCSCTTTTTCEEEEEC
T ss_pred ccccchhhcchHHHHHHHHHH---hC---------CCCCceEEECCCCCCHHHHHHHHHHHHHhcCCcchhcCCeEEEEe
Confidence 457999999998666665433 21 345789999999999999999999987 78899999
Q ss_pred chhhhhh-hhcccchhhHHHHHHHHHhc-CCeEEEEcCccccccccccccCCCchhhHHHHHHHHhhhcccccCCeEEEE
Q 035561 521 AQELEAG-LWVGQSASNVRELFQTARDL-APVIIFVEDFDLFAGVRGQFIHTKQQDHESFINQLLVELDGFEKQDGVVLM 598 (979)
Q Consensus 521 ~sdL~~~-~~vG~~~~~Ir~lF~~A~~~-aP~ILfIDEIDaL~~~r~~~~~~~~~~~~~iln~LL~~LDg~~~~~~ViVI 598 (979)
++.+... .+.+.....++.++..+... .|++|||||+|.+.+.+.. ....... .+.|...++ ...+++|
T Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~iDe~~~l~~~~~~--~~~~~~~---~~~l~~~~~----~~~~~ii 156 (187)
T 2p65_A 86 LSSLIAGAKYRGDFEERLKSILKEVQDAEGQVVMFIDEIHTVVGAGAV--AEGALDA---GNILKPMLA----RGELRCI 156 (187)
T ss_dssp HHHHHHHCCSHHHHHHHHHHHHHHHHHTTTSEEEEETTGGGGSSSSSS--CTTSCCT---HHHHHHHHH----TTCSCEE
T ss_pred HHHhhcCCCchhHHHHHHHHHHHHHHhcCCceEEEEeCHHHhcccccc--cccchHH---HHHHHHHHh----cCCeeEE
Confidence 8877532 24556666788888887665 6899999999999754431 1111222 233333332 2457888
Q ss_pred ecccchh-----hchhhhhcCCceeeEeccCCCC
Q 035561 599 ATTRNIK-----QIDEALQRPGRMDRIFNLQKPT 627 (979)
Q Consensus 599 ATTN~pe-----~LDpALlRpgRFd~~I~~~~Pd 627 (979)
++||.++ .+++++++ ||+. +.++.|+
T Consensus 157 ~~~~~~~~~~~~~~~~~l~~--R~~~-i~i~~p~ 187 (187)
T 2p65_A 157 GATTVSEYRQFIEKDKALER--RFQQ-ILVEQPS 187 (187)
T ss_dssp EEECHHHHHHHTTTCHHHHH--HEEE-EECCSCC
T ss_pred EecCHHHHHHHHhccHHHHH--hcCc-ccCCCCC
Confidence 8888876 58999999 9985 8999886
No 53
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=99.63 E-value=5.5e-16 Score=180.02 Aligned_cols=175 Identities=18% Similarity=0.241 Sum_probs=123.3
Q ss_pred CCCCCCCcccCcHHHHHHHHHHHHhhcChhHHHhcCCCCCceeEecCCCCCChHHHHHHHHHHc----------CCCEEE
Q 035561 449 NPPIPLKDFASVESMREEINEVVAFLQNPSAFQEMGARAPRGVLIVGERGTGKTSLALAIAAEA----------RVPVVN 518 (979)
Q Consensus 449 ~~~~~f~DIvGleevke~L~eiV~~L~~p~~f~~lG~~~P~gVLL~GPPGTGKTtLArAlA~el----------g~~~i~ 518 (979)
..+-++++|+|.++..+.+.+++.. +.+.++||+||||||||++|+++|..+ +.+++.
T Consensus 174 ~r~~~ld~iiGr~~~i~~l~~~l~r------------~~~~~~LL~G~pG~GKT~la~~la~~l~~~~~p~~l~~~~~~~ 241 (468)
T 3pxg_A 174 AKEDSLDPVIGRSKEIQRVIEVLSR------------RTKNNPVLIGEPGVGKTAIAEGLAQQIINNEVPEILRDKRVMT 241 (468)
T ss_dssp TTSSCSCCCCCCHHHHHHHHHHHHC------------SSSCEEEEESCTTTTTHHHHHHHHHHHHSSCSCTTTSSCCEEC
T ss_pred HhcCCCCCccCcHHHHHHHHHHHhc------------cCCCCeEEECCCCCCHHHHHHHHHHHHHhCCCChhhcCCeEEE
Confidence 4456899999999888877655421 334689999999999999999999996 788999
Q ss_pred eechhhhhhhhcccchhhHHHHHHHHHhcCCeEEEEcCccccccccccccCCCchhhHHHHHHHHhhhcccccCCeEEEE
Q 035561 519 VEAQELEAGLWVGQSASNVRELFQTARDLAPVIIFVEDFDLFAGVRGQFIHTKQQDHESFINQLLVELDGFEKQDGVVLM 598 (979)
Q Consensus 519 Is~sdL~~~~~vG~~~~~Ir~lF~~A~~~aP~ILfIDEIDaL~~~r~~~~~~~~~~~~~iln~LL~~LDg~~~~~~ViVI 598 (979)
++++ ..|.|..+..++.+|..+....|+||||| +. ....+.|+..|+ ...+.+|
T Consensus 242 l~~~----~~~~g~~e~~~~~~~~~~~~~~~~iLfiD-----~~-------------~~a~~~L~~~L~----~g~v~vI 295 (468)
T 3pxg_A 242 LDMG----TKYRGEFEDRLKKVMDEIRQAGNIILFID-----AA-------------IDASNILKPSLA----RGELQCI 295 (468)
T ss_dssp C--------------CTTHHHHHHHHHTCCCCEEEEC-----C---------------------CCCTT----SSSCEEE
T ss_pred eeCC----ccccchHHHHHHHHHHHHHhcCCeEEEEe-----Cc-------------hhHHHHHHHhhc----CCCEEEE
Confidence 9987 45788888999999999998889999999 10 112334444443 3467888
Q ss_pred ecccchh-----hchhhhhcCCceeeEeccCCCCHHHHHHHHHHHHHhccc--hhhhhhhhHHHHHHHcCCCC
Q 035561 599 ATTRNIK-----QIDEALQRPGRMDRIFNLQKPTQSEREKILRIAAQETMD--EELIDLVDWRKVAEKTALLR 664 (979)
Q Consensus 599 ATTN~pe-----~LDpALlRpgRFd~~I~~~~Pd~eeR~~IL~~~l~~~~~--~~l~~dvdL~~LA~~T~Gfs 664 (979)
+|||.++ .+|++++| ||. .|.|+.|+.+++..||+.++..... ....++..+..++..+.+|.
T Consensus 296 ~at~~~e~~~~~~~~~al~~--Rf~-~i~v~~p~~e~~~~iL~~~~~~~~~~~~~~i~~~al~~l~~~s~~~~ 365 (468)
T 3pxg_A 296 GATTLDEYRKYIEKDAALER--RFQ-PIQVDQPSVDESIQILQGLRDRYEAHHRVSITDDAIEAAVKLSDRYI 365 (468)
T ss_dssp EECCTTTTHHHHTTCSHHHH--SEE-EEECCCCCHHHHHHHHHHTTTTSGGGSSCSCCHHHHHHHHHHHHHSS
T ss_pred ecCCHHHHHHHhhcCHHHHH--hCc-cceeCCCCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHh
Confidence 8998876 68999999 997 5999999999999999987765210 11234455666776665554
No 54
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=99.63 E-value=6.5e-15 Score=163.74 Aligned_cols=211 Identities=15% Similarity=0.158 Sum_probs=141.0
Q ss_pred CCcccCcHHHHHHHHHHHHhhcChhHHHhcCCCCCceeEecCCCCCChHHHHHHHHHHc-----------CCCEEEeech
Q 035561 454 LKDFASVESMREEINEVVAFLQNPSAFQEMGARAPRGVLIVGERGTGKTSLALAIAAEA-----------RVPVVNVEAQ 522 (979)
Q Consensus 454 f~DIvGleevke~L~eiV~~L~~p~~f~~lG~~~P~gVLL~GPPGTGKTtLArAlA~el-----------g~~~i~Is~s 522 (979)
.++++|.++..+.|.+.+..... ...|.+++|+||||||||++|+++++++ +.+++.++|.
T Consensus 19 p~~l~gr~~~~~~l~~~l~~~~~--------~~~~~~vll~G~~G~GKT~la~~l~~~~~~~~~~~~~~~~~~~~~i~~~ 90 (384)
T 2qby_B 19 FKEIPFREDILRDAAIAIRYFVK--------NEVKFSNLFLGLTGTGKTFVSKYIFNEIEEVKKEDEEYKDVKQAYVNCR 90 (384)
T ss_dssp CSSCTTCHHHHHHHHHHHHHHHT--------TCCCCEEEEEECTTSSHHHHHHHHHHHHHHHHHHSSSSTTCEEEEEEHH
T ss_pred CCCCCChHHHHHHHHHHHHHHHc--------CCCCCcEEEECCCCCCHHHHHHHHHHHHHHHhhhhcCCCCceEEEEECc
Confidence 38899999999988877654211 2456789999999999999999999988 8999999987
Q ss_pred hhh-h---------hhh-------cccch-hhHHHHHHHHHhcCCeEEEEcCccccccccccccCCCchhhHHH-HHHHH
Q 035561 523 ELE-A---------GLW-------VGQSA-SNVRELFQTARDLAPVIIFVEDFDLFAGVRGQFIHTKQQDHESF-INQLL 583 (979)
Q Consensus 523 dL~-~---------~~~-------vG~~~-~~Ir~lF~~A~~~aP~ILfIDEIDaL~~~r~~~~~~~~~~~~~i-ln~LL 583 (979)
+.. . ... .+... ..+..++..+.. .++||||||+|.+...+ .... +..|+
T Consensus 91 ~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~l~~-~~~vlilDEi~~l~~~~----------~~~~~l~~l~ 159 (384)
T 2qby_B 91 EVGGTPQAVLSSLAGKLTGFSVPKHGINLGEYIDKIKNGTRN-IRAIIYLDEVDTLVKRR----------GGDIVLYQLL 159 (384)
T ss_dssp HHCSCHHHHHHHHHHHHHCSCCCSSSSCTHHHHHHHHHHHSS-SCEEEEEETTHHHHHST----------TSHHHHHHHH
T ss_pred cCCCCHHHHHHHHHHHhcCCCCCCCCCCHHHHHHHHHHHhcc-CCCEEEEECHHHhccCC----------CCceeHHHHh
Confidence 642 0 001 12212 224444444443 34499999999885321 1123 44554
Q ss_pred hhhcccccCCeEEEEecccch---hhchhhhhcCCceeeEeccCCCCHHHHHHHHHHHHHhccchhhhhhhhHHHHHHHc
Q 035561 584 VELDGFEKQDGVVLMATTRNI---KQIDEALQRPGRMDRIFNLQKPTQSEREKILRIAAQETMDEELIDLVDWRKVAEKT 660 (979)
Q Consensus 584 ~~LDg~~~~~~ViVIATTN~p---e~LDpALlRpgRFd~~I~~~~Pd~eeR~~IL~~~l~~~~~~~l~~dvdL~~LA~~T 660 (979)
... .++.+|+|||.+ +.+++++++ ||...+.|++|+.+++.+|++.++.........++..+..+++.+
T Consensus 160 ~~~------~~~~iI~~t~~~~~~~~l~~~l~s--r~~~~i~l~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~i~~~~ 231 (384)
T 2qby_B 160 RSD------ANISVIMISNDINVRDYMEPRVLS--SLGPSVIFKPYDAEQLKFILSKYAEYGLIKGTYDDEILSYIAAIS 231 (384)
T ss_dssp TSS------SCEEEEEECSSTTTTTTSCHHHHH--TCCCEEEECCCCHHHHHHHHHHHHHHTSCTTSCCSHHHHHHHHHH
T ss_pred cCC------cceEEEEEECCCchHhhhCHHHHh--cCCCeEEECCCCHHHHHHHHHHHHHhhcccCCcCHHHHHHHHHHH
Confidence 332 578888899886 678999998 888899999999999999999988742111223344577788888
Q ss_pred CCC--CHHHHHHHHHHHhhhhhccCCCChHHHh
Q 035561 661 ALL--RPIELKLVPVALEGSAFRSKFLDTDELM 691 (979)
Q Consensus 661 ~Gf--sgaDL~~Lv~aa~~aa~r~~~~s~~ei~ 691 (979)
.+. ....+.++++.+...+.....++.+++.
T Consensus 232 ~~~~G~~r~a~~~l~~a~~~a~~~~~i~~~~v~ 264 (384)
T 2qby_B 232 AKEHGDARKAVNLLFRAAQLASGGGIIRKEHVD 264 (384)
T ss_dssp HTTCCCHHHHHHHHHHHHHHTTSSSCCCHHHHH
T ss_pred HhccCCHHHHHHHHHHHHHHhcCCCccCHHHHH
Confidence 732 2333444554444333333445655543
No 55
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=99.62 E-value=3.5e-15 Score=172.07 Aligned_cols=204 Identities=17% Similarity=0.246 Sum_probs=135.6
Q ss_pred CCCCCCCccc-CcHHHHHHHHHHHHhhcChhHHHhcCCCCCceeEecCCCCCChHHHHHHHHHHc-----CCCEEEeech
Q 035561 449 NPPIPLKDFA-SVESMREEINEVVAFLQNPSAFQEMGARAPRGVLIVGERGTGKTSLALAIAAEA-----RVPVVNVEAQ 522 (979)
Q Consensus 449 ~~~~~f~DIv-Gleevke~L~eiV~~L~~p~~f~~lG~~~P~gVLL~GPPGTGKTtLArAlA~el-----g~~~i~Is~s 522 (979)
.+..+|++++ |..... .+..+......+ + . +.+++||||||||||++|+++|+++ +.+++++++.
T Consensus 99 ~~~~tfd~fv~g~~n~~-a~~~~~~~a~~~------~-~-~~~lll~Gp~G~GKTtLa~aia~~l~~~~~~~~v~~v~~~ 169 (440)
T 2z4s_A 99 NPDYTFENFVVGPGNSF-AYHAALEVAKHP------G-R-YNPLFIYGGVGLGKTHLLQSIGNYVVQNEPDLRVMYITSE 169 (440)
T ss_dssp CTTCSGGGCCCCTTTHH-HHHHHHHHHHST------T-S-SCCEEEECSSSSSHHHHHHHHHHHHHHHCCSSCEEEEEHH
T ss_pred CCCCChhhcCCCCchHH-HHHHHHHHHhCC------C-C-CCeEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEeeHH
Confidence 4566899988 644322 222222222222 1 2 5689999999999999999999988 8899999998
Q ss_pred hhhhhhhcccchhhHHHHHHHHHhcCCeEEEEcCccccccccccccCCCchhhHHHHHHHHhhhcccccCCeEEEEeccc
Q 035561 523 ELEAGLWVGQSASNVRELFQTARDLAPVIIFVEDFDLFAGVRGQFIHTKQQDHESFINQLLVELDGFEKQDGVVLMATTR 602 (979)
Q Consensus 523 dL~~~~~vG~~~~~Ir~lF~~A~~~aP~ILfIDEIDaL~~~r~~~~~~~~~~~~~iln~LL~~LDg~~~~~~ViVIATTN 602 (979)
++. ..+.+.........|.......|+||||||++.+.+.+ ...+.|+..++.+...+..+|++|.+
T Consensus 170 ~~~-~~~~~~~~~~~~~~~~~~~~~~~~vL~IDEi~~l~~~~------------~~q~~l~~~l~~l~~~~~~iIitt~~ 236 (440)
T 2z4s_A 170 KFL-NDLVDSMKEGKLNEFREKYRKKVDILLIDDVQFLIGKT------------GVQTELFHTFNELHDSGKQIVICSDR 236 (440)
T ss_dssp HHH-HHHHHHHHTTCHHHHHHHHTTTCSEEEEECGGGGSSCH------------HHHHHHHHHHHHHHTTTCEEEEEESS
T ss_pred HHH-HHHHHHHHcccHHHHHHHhcCCCCEEEEeCcccccCCh------------HHHHHHHHHHHHHHHCCCeEEEEECC
Confidence 875 33333222222223444333368999999999885321 11223333333333344566666666
Q ss_pred chhh---chhhhhcCCcee--eEeccCCCCHHHHHHHHHHHHHhccchhhhhhhhHHHHHHHcCCCCHHHHHHHHHHHhh
Q 035561 603 NIKQ---IDEALQRPGRMD--RIFNLQKPTQSEREKILRIAAQETMDEELIDLVDWRKVAEKTALLRPIELKLVPVALEG 677 (979)
Q Consensus 603 ~pe~---LDpALlRpgRFd--~~I~~~~Pd~eeR~~IL~~~l~~~~~~~l~~dvdL~~LA~~T~GfsgaDL~~Lv~aa~~ 677 (979)
.+.. ++++|++ ||. ..+.+++|+.++|.+|++..+..... . .++..+..||..+.| +..++.++++.+..
T Consensus 237 ~~~~l~~l~~~L~s--R~~~g~~i~l~~p~~e~r~~iL~~~~~~~~~-~-i~~e~l~~la~~~~g-n~R~l~~~L~~~~~ 311 (440)
T 2z4s_A 237 EPQKLSEFQDRLVS--RFQMGLVAKLEPPDEETRKSIARKMLEIEHG-E-LPEEVLNFVAENVDD-NLRRLRGAIIKLLV 311 (440)
T ss_dssp CGGGCSSCCHHHHH--HHHSSBCCBCCCCCHHHHHHHHHHHHHHHTC-C-CCTTHHHHHHHHCCS-CHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHh--hccCCeEEEeCCCCHHHHHHHHHHHHHHcCC-C-CCHHHHHHHHHhcCC-CHHHHHHHHHHHHH
Confidence 6665 7899999 886 78999999999999999998875321 1 233447889998877 77888887766554
Q ss_pred hh
Q 035561 678 SA 679 (979)
Q Consensus 678 aa 679 (979)
.+
T Consensus 312 ~a 313 (440)
T 2z4s_A 312 YK 313 (440)
T ss_dssp HH
T ss_pred HH
Confidence 44
No 56
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A
Probab=99.62 E-value=3.5e-15 Score=161.29 Aligned_cols=180 Identities=19% Similarity=0.268 Sum_probs=127.3
Q ss_pred cCCCCCCCCcccCcHHHHHHHHHHHHhhcChhHHHhcCCCCCceeEecCCCCCChHHHHHHHHHHc-----CCCEEEeec
Q 035561 447 VKNPPIPLKDFASVESMREEINEVVAFLQNPSAFQEMGARAPRGVLIVGERGTGKTSLALAIAAEA-----RVPVVNVEA 521 (979)
Q Consensus 447 v~~~~~~f~DIvGleevke~L~eiV~~L~~p~~f~~lG~~~P~gVLL~GPPGTGKTtLArAlA~el-----g~~~i~Is~ 521 (979)
.++++.+|++++|.+++++.|...+. . + ..| ++||+||||||||++|+++|+.+ +.+++.+++
T Consensus 9 ~k~~p~~~~~~~g~~~~~~~l~~~l~---~-------~-~~~-~~ll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~~~~ 76 (319)
T 2chq_A 9 EKYRPRTLDEVVGQDEVIQRLKGYVE---R-------K-NIP-HLLFSGPPGTGKTATAIALARDLFGENWRDNFIEMNA 76 (319)
T ss_dssp TTTSCSSGGGSCSCHHHHHHHHTTTT---T-------T-CCC-CEEEESSSSSSHHHHHHHHHHHHHTTCHHHHCEEEET
T ss_pred HhcCCCCHHHHhCCHHHHHHHHHHHh---C-------C-CCC-eEEEECcCCcCHHHHHHHHHHHhcCCcccCCeEEEeC
Confidence 35678899999999998888875432 1 1 222 49999999999999999999986 456888888
Q ss_pred hhhhhhhhcccchhhHHHHHHHHH--hcCCeEEEEcCccccccccccccCCCchhhHHHHHHHHhhhcccccCCeEEEEe
Q 035561 522 QELEAGLWVGQSASNVRELFQTAR--DLAPVIIFVEDFDLFAGVRGQFIHTKQQDHESFINQLLVELDGFEKQDGVVLMA 599 (979)
Q Consensus 522 sdL~~~~~vG~~~~~Ir~lF~~A~--~~aP~ILfIDEIDaL~~~r~~~~~~~~~~~~~iln~LL~~LDg~~~~~~ViVIA 599 (979)
++.. + .......+........ ...++||+|||+|.+.. ...+.|+..++.. ..++++|+
T Consensus 77 ~~~~-~--~~~~~~~~~~~~~~~~~~~~~~~vliiDe~~~l~~--------------~~~~~L~~~le~~--~~~~~~i~ 137 (319)
T 2chq_A 77 SDER-G--IDVVRHKIKEFARTAPIGGAPFKIIFLDEADALTA--------------DAQAALRRTMEMY--SKSCRFIL 137 (319)
T ss_dssp TSTT-C--TTTSSHHHHHHHHSCCSSSCCCEEEEEETGGGSCH--------------HHHHTTGGGTSSS--SSSEEEEE
T ss_pred cccc-C--hHHHHHHHHHHHhcCCCCCCCceEEEEeCCCcCCH--------------HHHHHHHHHHHhc--CCCCeEEE
Confidence 7642 1 1112222222211110 13579999999998732 2345566666643 34677888
Q ss_pred cccchhhchhhhhcCCceeeEeccCCCCHHHHHHHHHHHHHhccchhhhhhhhHHHHHHHcCC
Q 035561 600 TTRNIKQIDEALQRPGRMDRIFNLQKPTQSEREKILRIAAQETMDEELIDLVDWRKVAEKTAL 662 (979)
Q Consensus 600 TTN~pe~LDpALlRpgRFd~~I~~~~Pd~eeR~~IL~~~l~~~~~~~l~~dvdL~~LA~~T~G 662 (979)
+||.+..+++++++ |+. .+.|++|+.+++.++++..++.... ..++..+..|+..+.|
T Consensus 138 ~~~~~~~l~~~l~s--r~~-~i~~~~~~~~~~~~~l~~~~~~~~~--~i~~~~l~~l~~~~~G 195 (319)
T 2chq_A 138 SCNYVSRIIEPIQS--RCA-VFRFKPVPKEAMKKRLLEICEKEGV--KITEDGLEALIYISGG 195 (319)
T ss_dssp EESCGGGSCHHHHT--TCE-EEECCCCCHHHHHHHHHHHHHTTCC--CBCHHHHHHHHHTTTT
T ss_pred EeCChhhcchHHHh--hCe-EEEecCCCHHHHHHHHHHHHHHcCC--CCCHHHHHHHHHHcCC
Confidence 89999999999999 775 8999999999999999998875421 2344567778877766
No 57
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=99.62 E-value=5.1e-15 Score=152.84 Aligned_cols=201 Identities=13% Similarity=0.092 Sum_probs=129.9
Q ss_pred CCCCCCcccCc---HHHHHHHHHHHHhhcChhHHHhcCCCCCceeEecCCCCCChHHHHHHHHHHcC---CCEEEeechh
Q 035561 450 PPIPLKDFASV---ESMREEINEVVAFLQNPSAFQEMGARAPRGVLIVGERGTGKTSLALAIAAEAR---VPVVNVEAQE 523 (979)
Q Consensus 450 ~~~~f~DIvGl---eevke~L~eiV~~L~~p~~f~~lG~~~P~gVLL~GPPGTGKTtLArAlA~elg---~~~i~Is~sd 523 (979)
++.+|++++|. +.+.+.|..... ...+.+++|+||||||||++|+++++++. .+++.+++++
T Consensus 23 ~~~~~~~~~~~~~~~~~~~~l~~~~~------------~~~~~~~ll~G~~G~GKT~la~~l~~~~~~~~~~~~~~~~~~ 90 (242)
T 3bos_A 23 DDETFTSYYPAAGNDELIGALKSAAS------------GDGVQAIYLWGPVKSGRTHLIHAACARANELERRSFYIPLGI 90 (242)
T ss_dssp TTCSTTTSCC--CCHHHHHHHHHHHH------------TCSCSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEGGG
T ss_pred CCCChhhccCCCCCHHHHHHHHHHHh------------CCCCCeEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEEHHH
Confidence 44789999973 344444443321 12457899999999999999999999874 7899999988
Q ss_pred hhhhhhcccchhhHHHHHHHHHhcCCeEEEEcCccccccccccccCCCchhhHHHHHHHHhhhcccccCCeE-EEEeccc
Q 035561 524 LEAGLWVGQSASNVRELFQTARDLAPVIIFVEDFDLFAGVRGQFIHTKQQDHESFINQLLVELDGFEKQDGV-VLMATTR 602 (979)
Q Consensus 524 L~~~~~vG~~~~~Ir~lF~~A~~~aP~ILfIDEIDaL~~~r~~~~~~~~~~~~~iln~LL~~LDg~~~~~~V-iVIATTN 602 (979)
+. ..+. .. +.. ...+++|+|||+|.+.... ...+.|+..++.......+ +|+++++
T Consensus 91 ~~-~~~~----~~----~~~--~~~~~vliiDe~~~~~~~~------------~~~~~l~~~l~~~~~~~~~~ii~~~~~ 147 (242)
T 3bos_A 91 HA-SIST----AL----LEG--LEQFDLICIDDVDAVAGHP------------LWEEAIFDLYNRVAEQKRGSLIVSASA 147 (242)
T ss_dssp GG-GSCG----GG----GTT--GGGSSEEEEETGGGGTTCH------------HHHHHHHHHHHHHHHHCSCEEEEEESS
T ss_pred HH-HHHH----HH----HHh--ccCCCEEEEeccccccCCH------------HHHHHHHHHHHHHHHcCCCeEEEEcCC
Confidence 75 2211 11 111 1357999999999874211 1122333333333222333 5555555
Q ss_pred chh---hchhhhhcCCcee--eEeccCCCCHHHHHHHHHHHHHhccchhhhhhhhHHHHHHHcCCCCHHHHHHHHHHHhh
Q 035561 603 NIK---QIDEALQRPGRMD--RIFNLQKPTQSEREKILRIAAQETMDEELIDLVDWRKVAEKTALLRPIELKLVPVALEG 677 (979)
Q Consensus 603 ~pe---~LDpALlRpgRFd--~~I~~~~Pd~eeR~~IL~~~l~~~~~~~l~~dvdL~~LA~~T~GfsgaDL~~Lv~aa~~ 677 (979)
.+. .+++++.+ ||. ..+.+++|+.+++.++++.+++... ...++..+..+++.+.| +..++.+++..+..
T Consensus 148 ~~~~~~~~~~~l~~--r~~~~~~i~l~~~~~~~~~~~l~~~~~~~~--~~~~~~~~~~l~~~~~g-~~r~l~~~l~~~~~ 222 (242)
T 3bos_A 148 SPMEAGFVLPDLVS--RMHWGLTYQLQPMMDDEKLAALQRRAAMRG--LQLPEDVGRFLLNRMAR-DLRTLFDVLDRLDK 222 (242)
T ss_dssp CTTTTTCCCHHHHH--HHHHSEEEECCCCCGGGHHHHHHHHHHHTT--CCCCHHHHHHHHHHTTT-CHHHHHHHHHHHHH
T ss_pred CHHHHHHhhhhhhh--HhhcCceEEeCCCCHHHHHHHHHHHHHHcC--CCCCHHHHHHHHHHccC-CHHHHHHHHHHHHH
Confidence 554 45688888 775 8999999999999999999987542 12344557788888877 67777777665554
Q ss_pred hhh-ccCCCChHHH
Q 035561 678 SAF-RSKFLDTDEL 690 (979)
Q Consensus 678 aa~-r~~~~s~~ei 690 (979)
.+. ....++.+++
T Consensus 223 ~a~~~~~~It~~~v 236 (242)
T 3bos_A 223 ASMVHQRKLTIPFV 236 (242)
T ss_dssp HHHHHTCCCCHHHH
T ss_pred HHHHhCCCCcHHHH
Confidence 443 2333555444
No 58
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=99.62 E-value=4.9e-15 Score=181.33 Aligned_cols=185 Identities=18% Similarity=0.227 Sum_probs=127.3
Q ss_pred CCCCCCCcccCcHHHHHHHHHHHHhhcChhHHHhcCCCCCceeEecCCCCCChHHHHHHHHHHc----------CCCEEE
Q 035561 449 NPPIPLKDFASVESMREEINEVVAFLQNPSAFQEMGARAPRGVLIVGERGTGKTSLALAIAAEA----------RVPVVN 518 (979)
Q Consensus 449 ~~~~~f~DIvGleevke~L~eiV~~L~~p~~f~~lG~~~P~gVLL~GPPGTGKTtLArAlA~el----------g~~~i~ 518 (979)
..+-++++++|.++.++.+.+++. .+.+.++||+||||||||++|+++|+.+ +.+++.
T Consensus 174 ~~~~~ld~iiG~~~~i~~l~~~l~------------~~~~~~vLL~G~pGtGKT~la~~la~~l~~~~~p~~l~~~~~~~ 241 (758)
T 3pxi_A 174 AKEDSLDPVIGRSKEIQRVIEVLS------------RRTKNNPVLIGEPGVGKTAIAEGLAQQIINNEVPEILRDKRVMT 241 (758)
T ss_dssp TTSSCSCCCCCCHHHHHHHHHHHH------------CSSSCEEEEESCTTTTTHHHHHHHHHHHHSSCSCTTTSSCCEEC
T ss_pred HhhCCCCCccCchHHHHHHHHHHh------------CCCCCCeEEECCCCCCHHHHHHHHHHHHhcCCCChhhcCCeEEE
Confidence 345679999999988888775542 2345689999999999999999999997 889999
Q ss_pred eechhhhhhhhcccchhhHHHHHHHHHhcCCeEEEEcCccccccccccccCCCchhhHHHHHHHHhhhcccccCCeEEEE
Q 035561 519 VEAQELEAGLWVGQSASNVRELFQTARDLAPVIIFVEDFDLFAGVRGQFIHTKQQDHESFINQLLVELDGFEKQDGVVLM 598 (979)
Q Consensus 519 Is~sdL~~~~~vG~~~~~Ir~lF~~A~~~aP~ILfIDEIDaL~~~r~~~~~~~~~~~~~iln~LL~~LDg~~~~~~ViVI 598 (979)
+++ ...|.|+.+..++.+|..+....|+||||| + .....+.|+..|+ ...+.+|
T Consensus 242 ~~~----g~~~~G~~e~~l~~~~~~~~~~~~~iLfiD-----~-------------~~~~~~~L~~~l~----~~~v~~I 295 (758)
T 3pxi_A 242 LDM----GTKYRGEFEDRLKKVMDEIRQAGNIILFID-----A-------------AIDASNILKPSLA----RGELQCI 295 (758)
T ss_dssp C--------------CTTHHHHHHHHHTCCCCEEEEC-----C---------------------CCCTT----SSSCEEE
T ss_pred ecc----cccccchHHHHHHHHHHHHHhcCCEEEEEc-----C-------------chhHHHHHHHHHh----cCCEEEE
Confidence 888 256789999999999999999899999999 1 0112344554443 3467888
Q ss_pred ecccchh-----hchhhhhcCCceeeEeccCCCCHHHHHHHHHHHHHhccc--hhhhhhhhHHHHHHHcC-----CCCHH
Q 035561 599 ATTRNIK-----QIDEALQRPGRMDRIFNLQKPTQSEREKILRIAAQETMD--EELIDLVDWRKVAEKTA-----LLRPI 666 (979)
Q Consensus 599 ATTN~pe-----~LDpALlRpgRFd~~I~~~~Pd~eeR~~IL~~~l~~~~~--~~l~~dvdL~~LA~~T~-----Gfsga 666 (979)
+|||..+ .+|++++| || ..|.|+.|+.+++.+||+.++..... ....++..+..++..+. ++.+.
T Consensus 296 ~at~~~~~~~~~~~d~al~r--Rf-~~i~v~~p~~~~~~~il~~~~~~~~~~~~~~i~~~al~~~~~~s~~~i~~~~~p~ 372 (758)
T 3pxi_A 296 GATTLDEYRKYIEKDAALER--RF-QPIQVDQPSVDESIQILQGLRDRYEAHHRVSITDDAIEAAVKLSDRYISDRFLPD 372 (758)
T ss_dssp EECCTTTTHHHHTTCSHHHH--SE-EEEECCCCCHHHHHHHHHHTTTTSGGGSSCSCCHHHHHHHHHHHHHSSCCSCTTH
T ss_pred eCCChHHHHHHhhccHHHHh--hC-cEEEeCCCCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhhcccccCcCCc
Confidence 8998877 79999999 99 56999999999999999977654211 11123344555555443 45555
Q ss_pred HHHHHHHH
Q 035561 667 ELKLVPVA 674 (979)
Q Consensus 667 DL~~Lv~a 674 (979)
+...++..
T Consensus 373 ~ai~ll~~ 380 (758)
T 3pxi_A 373 KAIDLIDE 380 (758)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 55555443
No 59
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=99.62 E-value=2.7e-15 Score=186.06 Aligned_cols=202 Identities=19% Similarity=0.204 Sum_probs=129.2
Q ss_pred CCCCCCcccCcHHHHHHHHHHHHhhcChhHHHhcCCCCCceeEecCCCCCChHHHHHHHHHHc----------CCCEEEe
Q 035561 450 PPIPLKDFASVESMREEINEVVAFLQNPSAFQEMGARAPRGVLIVGERGTGKTSLALAIAAEA----------RVPVVNV 519 (979)
Q Consensus 450 ~~~~f~DIvGleevke~L~eiV~~L~~p~~f~~lG~~~P~gVLL~GPPGTGKTtLArAlA~el----------g~~~i~I 519 (979)
++.+|++++|.++..+.+.+++. .+.+.++||+||||||||++|+++|+.+ +.+++.+
T Consensus 165 r~~~ld~viGr~~~i~~l~~~l~------------~~~~~~vlL~G~pG~GKT~la~~la~~l~~~~~p~~l~~~~~~~l 232 (854)
T 1qvr_A 165 AEGKLDPVIGRDEEIRRVIQILL------------RRTKNNPVLIGEPGVGKTAIVEGLAQRIVKGDVPEGLKGKRIVSL 232 (854)
T ss_dssp HTTCSCCCCSCHHHHHHHHHHHH------------CSSCCCCEEEECTTSCHHHHHHHHHHHHHHTCSCTTSTTCEEEEE
T ss_pred hcCCCcccCCcHHHHHHHHHHHh------------cCCCCceEEEcCCCCCHHHHHHHHHHHHhcCCCchhhcCCeEEEe
Confidence 35689999999976666654431 1345679999999999999999999987 8899999
Q ss_pred echhhhh-hhhcccchhhHHHHHHHHHhc-CCeEEEEcCccccccccccccCCCchhhHHHHHHHHhhhcccccCCeEEE
Q 035561 520 EAQELEA-GLWVGQSASNVRELFQTARDL-APVIIFVEDFDLFAGVRGQFIHTKQQDHESFINQLLVELDGFEKQDGVVL 597 (979)
Q Consensus 520 s~sdL~~-~~~vG~~~~~Ir~lF~~A~~~-aP~ILfIDEIDaL~~~r~~~~~~~~~~~~~iln~LL~~LDg~~~~~~ViV 597 (979)
+++.+.. ..+.|..+..++.+|..+... .|+||||||+|.+.+.++. .+... ..+.|...++ ...+.+
T Consensus 233 ~~~~l~~g~~~~g~~~~~l~~~~~~~~~~~~~~iL~IDEi~~l~~~~~~---~g~~~---~~~~L~~~l~----~~~i~~ 302 (854)
T 1qvr_A 233 QMGSLLAGAKYRGEFEERLKAVIQEVVQSQGEVILFIDELHTVVGAGKA---EGAVD---AGNMLKPALA----RGELRL 302 (854)
T ss_dssp CC-----------CHHHHHHHHHHHHHTTCSSEEEEECCC-------------------------HHHHH----TTCCCE
T ss_pred ehHHhhccCccchHHHHHHHHHHHHHHhcCCCeEEEEecHHHHhccCCc---cchHH---HHHHHHHHHh----CCCeEE
Confidence 9998863 357888899999999999875 6899999999999765432 11122 2233333332 245678
Q ss_pred Eecccchh----hchhhhhcCCceeeEeccCCCCHHHHHHHHHHHHHhccc--hhhhhhhhHHHHHHHc-----CCCCHH
Q 035561 598 MATTRNIK----QIDEALQRPGRMDRIFNLQKPTQSEREKILRIAAQETMD--EELIDLVDWRKVAEKT-----ALLRPI 666 (979)
Q Consensus 598 IATTN~pe----~LDpALlRpgRFd~~I~~~~Pd~eeR~~IL~~~l~~~~~--~~l~~dvdL~~LA~~T-----~Gfsga 666 (979)
|++||.++ .+|++|.| ||+. +.|+.|+.+++.+||+.++..... .....+..+..+++.+ +.|.+.
T Consensus 303 I~at~~~~~~~~~~d~aL~r--Rf~~-i~l~~p~~~e~~~iL~~~~~~~~~~~~~~i~~~al~~~~~ls~r~i~~~~lp~ 379 (854)
T 1qvr_A 303 IGATTLDEYREIEKDPALER--RFQP-VYVDEPTVEETISILRGLKEKYEVHHGVRISDSAIIAAATLSHRYITERRLPD 379 (854)
T ss_dssp EEEECHHHHHHHTTCTTTCS--CCCC-EEECCCCHHHHHHHHHHHHHHHHHHTTCEECHHHHHHHHHHHHHHCCSSCTHH
T ss_pred EEecCchHHhhhccCHHHHh--CCce-EEeCCCCHHHHHHHHHhhhhhhhhhcCCCCCHHHHHHHHHHHhhhcccccChH
Confidence 88888765 47999999 9985 999999999999999987764310 0112333455555544 345566
Q ss_pred HHHHHHHHHh
Q 035561 667 ELKLVPVALE 676 (979)
Q Consensus 667 DL~~Lv~aa~ 676 (979)
....++..+.
T Consensus 380 kai~lldea~ 389 (854)
T 1qvr_A 380 KAIDLIDEAA 389 (854)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 6666654443
No 60
>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G
Probab=99.61 E-value=5.6e-15 Score=162.50 Aligned_cols=161 Identities=20% Similarity=0.335 Sum_probs=101.9
Q ss_pred CCCCCCCCcccCcHHHHHHHHHHHHhhcChhHHHhcCCCCCceeEecCCCCCChHHHHHHHHHHcCC-------C-----
Q 035561 448 KNPPIPLKDFASVESMREEINEVVAFLQNPSAFQEMGARAPRGVLIVGERGTGKTSLALAIAAEARV-------P----- 515 (979)
Q Consensus 448 ~~~~~~f~DIvGleevke~L~eiV~~L~~p~~f~~lG~~~P~gVLL~GPPGTGKTtLArAlA~elg~-------~----- 515 (979)
..++.+|++++|.+++++.+.... + . +.+.++||+||||||||++|+++|+.++. +
T Consensus 17 ~~~~~~f~~i~G~~~~~~~l~~~~--~-~---------~~~~~vLl~G~~GtGKT~la~~la~~~~~~~~~~~~~~~~~~ 84 (350)
T 1g8p_A 17 TRPVFPFSAIVGQEDMKLALLLTA--V-D---------PGIGGVLVFGDRGTGKSTAVRALAALLPEIEAVEGCPVSSPN 84 (350)
T ss_dssp -CCCCCGGGSCSCHHHHHHHHHHH--H-C---------GGGCCEEEECCGGGCTTHHHHHHHHHSCCEEEETTCTTCCSS
T ss_pred CCCCCCchhccChHHHHHHHHHHh--h-C---------CCCceEEEECCCCccHHHHHHHHHHhCccccccccccccccc
Confidence 346788999999998777643211 1 1 12346999999999999999999999863 2
Q ss_pred ---------------------EEEeechhhhhhhhcccchhhHHHHHHHH---------HhcCCeEEEEcCccccccccc
Q 035561 516 ---------------------VVNVEAQELEAGLWVGQSASNVRELFQTA---------RDLAPVIIFVEDFDLFAGVRG 565 (979)
Q Consensus 516 ---------------------~i~Is~sdL~~~~~vG~~~~~Ir~lF~~A---------~~~aP~ILfIDEIDaL~~~r~ 565 (979)
++.+..+... ....|. ..+...+..+ ....++||||||+|.+..
T Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~l~g~--~~~~~~~~~~~~~~~~g~~~~a~~~vl~iDEi~~l~~--- 158 (350)
T 1g8p_A 85 VEMIPDWATVLSTNVIRKPTPVVDLPLGVSE-DRVVGA--LDIERAISKGEKAFEPGLLARANRGYLYIDECNLLED--- 158 (350)
T ss_dssp GGGSCTTCCCSCCCEEEECCCEEEECTTCCH-HHHHCE--ECHHHHHHHCGGGEECCHHHHHTTEEEEETTGGGSCH---
T ss_pred cccccchhhhhccccccCCCcccccCCCcch-hhheee--chhhhhhcCCceeecCceeeecCCCEEEEeChhhCCH---
Confidence 1111111000 011111 0011222222 112379999999998732
Q ss_pred cccCCCchhhHHHHHHHHhhhcc----cc-------cCCeEEEEecccchh-hchhhhhcCCceeeEeccCCC-CHHHHH
Q 035561 566 QFIHTKQQDHESFINQLLVELDG----FE-------KQDGVVLMATTRNIK-QIDEALQRPGRMDRIFNLQKP-TQSERE 632 (979)
Q Consensus 566 ~~~~~~~~~~~~iln~LL~~LDg----~~-------~~~~ViVIATTN~pe-~LDpALlRpgRFd~~I~~~~P-d~eeR~ 632 (979)
...+.|+..|+. +. ....+++|+|||..+ .++++|++ ||+..+.+++| +.+++.
T Consensus 159 -----------~~~~~Ll~~le~~~~~~~~~g~~~~~~~~~~li~~~n~~~~~l~~~L~~--R~~~~~~l~~~~~~~~~~ 225 (350)
T 1g8p_A 159 -----------HIVDLLLDVAQSGENVVERDGLSIRHPARFVLVGSGNPEEGDLRPQLLD--RFGLSVEVLSPRDVETRV 225 (350)
T ss_dssp -----------HHHHHHHHHHHHSEEEECCTTCCEEEECCEEEEEEECSCSCCCCHHHHT--TCSEEEECCCCCSHHHHH
T ss_pred -----------HHHHHHHHHHhcCceEEEecceEEeeCCceEEEEEeCCCCCCCCHHHHh--hcceEEEcCCCCcHHHHH
Confidence 233455554442 11 113688999999744 89999999 99999999999 677888
Q ss_pred HHHHHHH
Q 035561 633 KILRIAA 639 (979)
Q Consensus 633 ~IL~~~l 639 (979)
+|++.++
T Consensus 226 ~il~~~~ 232 (350)
T 1g8p_A 226 EVIRRRD 232 (350)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 9998753
No 61
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=99.59 E-value=2.1e-14 Score=155.64 Aligned_cols=183 Identities=22% Similarity=0.259 Sum_probs=129.1
Q ss_pred CCCCCCCCcccCcHHHHHHHHHHHHhhcChhHHHhcCCCCCceeEecCCCCCChHHHHHHHHHHcC-----CCEEEeech
Q 035561 448 KNPPIPLKDFASVESMREEINEVVAFLQNPSAFQEMGARAPRGVLIVGERGTGKTSLALAIAAEAR-----VPVVNVEAQ 522 (979)
Q Consensus 448 ~~~~~~f~DIvGleevke~L~eiV~~L~~p~~f~~lG~~~P~gVLL~GPPGTGKTtLArAlA~elg-----~~~i~Is~s 522 (979)
+.++.+|++++|.+++++.|...+.. | + +.++||+||||||||++|+++|+.+. .+++.++++
T Consensus 18 k~~p~~~~~~~g~~~~~~~l~~~l~~----------~-~-~~~~ll~G~~G~GKT~la~~l~~~l~~~~~~~~~~~~~~~ 85 (327)
T 1iqp_A 18 KYRPQRLDDIVGQEHIVKRLKHYVKT----------G-S-MPHLLFAGPPGVGKTTAALALARELFGENWRHNFLELNAS 85 (327)
T ss_dssp HTCCCSTTTCCSCHHHHHHHHHHHHH----------T-C-CCEEEEESCTTSSHHHHHHHHHHHHHGGGHHHHEEEEETT
T ss_pred ccCCCCHHHhhCCHHHHHHHHHHHHc----------C-C-CCeEEEECcCCCCHHHHHHHHHHHhcCCcccCceEEeecc
Confidence 56778999999999999988866532 1 2 23599999999999999999999863 357888876
Q ss_pred hhhhhhhcccchhhHHHHHHHH-H-----hcCCeEEEEcCccccccccccccCCCchhhHHHHHHHHhhhcccccCCeEE
Q 035561 523 ELEAGLWVGQSASNVRELFQTA-R-----DLAPVIIFVEDFDLFAGVRGQFIHTKQQDHESFINQLLVELDGFEKQDGVV 596 (979)
Q Consensus 523 dL~~~~~vG~~~~~Ir~lF~~A-~-----~~aP~ILfIDEIDaL~~~r~~~~~~~~~~~~~iln~LL~~LDg~~~~~~Vi 596 (979)
+.. + . ..++..+... . ...++||+|||+|.+.. ...+.|+..++.. ..++.
T Consensus 86 ~~~-~--~----~~~~~~~~~~~~~~~~~~~~~~vliiDe~~~l~~--------------~~~~~L~~~le~~--~~~~~ 142 (327)
T 1iqp_A 86 DER-G--I----NVIREKVKEFARTKPIGGASFKIIFLDEADALTQ--------------DAQQALRRTMEMF--SSNVR 142 (327)
T ss_dssp CHH-H--H----HTTHHHHHHHHHSCCGGGCSCEEEEEETGGGSCH--------------HHHHHHHHHHHHT--TTTEE
T ss_pred ccC-c--h----HHHHHHHHHHHhhCCcCCCCCeEEEEeCCCcCCH--------------HHHHHHHHHHHhc--CCCCe
Confidence 642 1 1 1222222221 1 13579999999998731 2345566666643 34567
Q ss_pred EEecccchhhchhhhhcCCceeeEeccCCCCHHHHHHHHHHHHHhccchhhhhhhhHHHHHHHcCCCCHHHHHHH
Q 035561 597 LMATTRNIKQIDEALQRPGRMDRIFNLQKPTQSEREKILRIAAQETMDEELIDLVDWRKVAEKTALLRPIELKLV 671 (979)
Q Consensus 597 VIATTN~pe~LDpALlRpgRFd~~I~~~~Pd~eeR~~IL~~~l~~~~~~~l~~dvdL~~LA~~T~GfsgaDL~~L 671 (979)
+|.+||.++.+++++.+ |+. .+.|++|+.++...+++..++... ...++..+..+++.+.| +...+.++
T Consensus 143 ~i~~~~~~~~l~~~l~s--r~~-~~~~~~l~~~~~~~~l~~~~~~~~--~~~~~~~~~~l~~~~~g-~~r~~~~~ 211 (327)
T 1iqp_A 143 FILSCNYSSKIIEPIQS--RCA-IFRFRPLRDEDIAKRLRYIAENEG--LELTEEGLQAILYIAEG-DMRRAINI 211 (327)
T ss_dssp EEEEESCGGGSCHHHHH--TEE-EEECCCCCHHHHHHHHHHHHHTTT--CEECHHHHHHHHHHHTT-CHHHHHHH
T ss_pred EEEEeCCccccCHHHHh--hCc-EEEecCCCHHHHHHHHHHHHHhcC--CCCCHHHHHHHHHHCCC-CHHHHHHH
Confidence 77789999999999998 776 789999999999999998887542 12344567788888877 33333333
No 62
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=99.59 E-value=7.4e-15 Score=179.69 Aligned_cols=192 Identities=16% Similarity=0.198 Sum_probs=131.8
Q ss_pred CcccCcHHHHHHHHHHHHhhcChhHHHhcCCC---CCc-eeEecCCCCCChHHHHHHHHHHc---CCCEEEeechhhhhh
Q 035561 455 KDFASVESMREEINEVVAFLQNPSAFQEMGAR---APR-GVLIVGERGTGKTSLALAIAAEA---RVPVVNVEAQELEAG 527 (979)
Q Consensus 455 ~DIvGleevke~L~eiV~~L~~p~~f~~lG~~---~P~-gVLL~GPPGTGKTtLArAlA~el---g~~~i~Is~sdL~~~ 527 (979)
++++|++++++.+.+.+..... |.. .|. ++||+||||||||++|+++|+.+ +.+++.++|+++. +
T Consensus 491 ~~viGq~~a~~~l~~~i~~~~~-------~~~~~~~p~~~~Ll~Gp~GtGKT~lA~ala~~l~~~~~~~i~i~~s~~~-~ 562 (758)
T 3pxi_A 491 SRVIGQDEAVVAVAKAVRRARA-------GLKDPKRPIGSFIFLGPTGVGKTELARALAESIFGDEESMIRIDMSEYM-E 562 (758)
T ss_dssp TTSCSCHHHHHHHHHHHHHHTT-------TCSCTTSCSEEEEEESCTTSSHHHHHHHHHHHHHSCTTCEEEEEGGGGC-S
T ss_pred CcCcChHHHHHHHHHHHHHHHc-------ccCCCCCCceEEEEECCCCCCHHHHHHHHHHHhcCCCcceEEEechhcc-c
Confidence 5689999999998877765321 222 233 69999999999999999999997 7899999999987 3
Q ss_pred hhcccchhhHHHHHHHHHhcCCeEEEEcCccccccccccccCCCchhhHHHHHHHHhhhcccc---------cCCeEEEE
Q 035561 528 LWVGQSASNVRELFQTARDLAPVIIFVEDFDLFAGVRGQFIHTKQQDHESFINQLLVELDGFE---------KQDGVVLM 598 (979)
Q Consensus 528 ~~vG~~~~~Ir~lF~~A~~~aP~ILfIDEIDaL~~~r~~~~~~~~~~~~~iln~LL~~LDg~~---------~~~~ViVI 598 (979)
.+... ...++...+...++||||||||.+ ...+.+.|+..|+.-. ...++++|
T Consensus 563 ~~~~~----~~~l~~~~~~~~~~vl~lDEi~~~--------------~~~~~~~Ll~~le~g~~~~~~g~~~~~~~~~iI 624 (758)
T 3pxi_A 563 KHSTS----GGQLTEKVRRKPYSVVLLDAIEKA--------------HPDVFNILLQVLEDGRLTDSKGRTVDFRNTILI 624 (758)
T ss_dssp SCCCC-------CHHHHHHCSSSEEEEECGGGS--------------CHHHHHHHHHHHHHSBCC-----CCBCTTCEEE
T ss_pred ccccc----cchhhHHHHhCCCeEEEEeCcccc--------------CHHHHHHHHHHhccCeEEcCCCCEeccCCeEEE
Confidence 33332 122334445556799999999876 2356677777776521 12357899
Q ss_pred ecccchh------------hchhhhhcCCceeeEeccCCCCHHHHHHHHHHHHHhccc-------hhhhhhhhHHHHHHH
Q 035561 599 ATTRNIK------------QIDEALQRPGRMDRIFNLQKPTQSEREKILRIAAQETMD-------EELIDLVDWRKVAEK 659 (979)
Q Consensus 599 ATTN~pe------------~LDpALlRpgRFd~~I~~~~Pd~eeR~~IL~~~l~~~~~-------~~l~~dvdL~~LA~~ 659 (979)
+|||.+. .++|+|++ ||+..|.|++|+.+++..|++.++..... ....++..++.|++.
T Consensus 625 ~ttn~~~~~~~~~~~~~~~~f~p~l~~--Rl~~~i~~~~l~~~~~~~i~~~~l~~~~~~~~~~~~~~~~~~~a~~~l~~~ 702 (758)
T 3pxi_A 625 MTSNVGASEKDKVMGELKRAFRPEFIN--RIDEIIVFHSLEKKHLTEIVSLMSDQLTKRLKEQDLSIELTDAAKAKVAEE 702 (758)
T ss_dssp EEESSSTTCCHHHHHHHHHHSCHHHHT--TSSEEEECC--CHHHHHHHHHHHHHHHHHHHHTTTCEEEECHHHHHHHHGG
T ss_pred EeCCCChhhHHHHHHHHHhhCCHHHHh--hCCeEEecCCCCHHHHHHHHHHHHHHHHHHHHhCCCeEEECHHHHHHHHHh
Confidence 9999633 27889998 99999999999999999999998865311 011233345556553
Q ss_pred c--CCCCHHHHHHHHHH
Q 035561 660 T--ALLRPIELKLVPVA 674 (979)
Q Consensus 660 T--~GfsgaDL~~Lv~a 674 (979)
. ..+...+|+++++.
T Consensus 703 ~~~~~~~~R~L~~~i~~ 719 (758)
T 3pxi_A 703 GVDLEYGARPLRRAIQK 719 (758)
T ss_dssp GCCTTTTTTTHHHHHHH
T ss_pred CCCCCCCChHHHHHHHH
Confidence 2 23445566666543
No 63
>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}
Probab=99.59 E-value=8.1e-15 Score=161.20 Aligned_cols=157 Identities=14% Similarity=0.129 Sum_probs=107.3
Q ss_pred CCCcccCcHHHHHHHHHHHHhhcChhHHHhcCCCCCceeEecCCCCCChHHHHHHHHHHcCCCEEEeech-hhhhhhhcc
Q 035561 453 PLKDFASVESMREEINEVVAFLQNPSAFQEMGARAPRGVLIVGERGTGKTSLALAIAAEARVPVVNVEAQ-ELEAGLWVG 531 (979)
Q Consensus 453 ~f~DIvGleevke~L~eiV~~L~~p~~f~~lG~~~P~gVLL~GPPGTGKTtLArAlA~elg~~~i~Is~s-dL~~~~~vG 531 (979)
.+++++|.+++++.+...+.. +.++||+||||||||++|+++|+.++.+++.++|+ +...+...|
T Consensus 25 ~~~~i~g~~~~~~~l~~~l~~--------------~~~vll~G~pGtGKT~la~~la~~~~~~~~~i~~~~~~~~~~l~g 90 (331)
T 2r44_A 25 VGKVVVGQKYMINRLLIGICT--------------GGHILLEGVPGLAKTLSVNTLAKTMDLDFHRIQFTPDLLPSDLIG 90 (331)
T ss_dssp HTTTCCSCHHHHHHHHHHHHH--------------TCCEEEESCCCHHHHHHHHHHHHHTTCCEEEEECCTTCCHHHHHE
T ss_pred hccceeCcHHHHHHHHHHHHc--------------CCeEEEECCCCCcHHHHHHHHHHHhCCCeEEEecCCCCChhhcCC
Confidence 367899999988877644321 24799999999999999999999999999999884 111111111
Q ss_pred cchhh-HHHHHHHHHhcC---CeEEEEcCccccccccccccCCCchhhHHHHHHHHhhhccc---------ccCCeEEEE
Q 035561 532 QSASN-VRELFQTARDLA---PVIIFVEDFDLFAGVRGQFIHTKQQDHESFINQLLVELDGF---------EKQDGVVLM 598 (979)
Q Consensus 532 ~~~~~-Ir~lF~~A~~~a---P~ILfIDEIDaL~~~r~~~~~~~~~~~~~iln~LL~~LDg~---------~~~~~ViVI 598 (979)
..... -...|. .... .+||||||+|.+. ....+.|+..|+.. .....++++
T Consensus 91 ~~~~~~~~~~~~--~~~g~l~~~vl~iDEi~~~~--------------~~~~~~Ll~~l~~~~~~~~g~~~~~~~~~~vi 154 (331)
T 2r44_A 91 TMIYNQHKGNFE--VKKGPVFSNFILADEVNRSP--------------AKVQSALLECMQEKQVTIGDTTYPLDNPFLVL 154 (331)
T ss_dssp EEEEETTTTEEE--EEECTTCSSEEEEETGGGSC--------------HHHHHHHHHHHHHSEEEETTEEEECCSSCEEE
T ss_pred ceeecCCCCceE--eccCcccccEEEEEccccCC--------------HHHHHHHHHHHhcCceeeCCEEEECCCCEEEE
Confidence 11000 000000 0112 3799999999763 22344555555431 123457888
Q ss_pred ecccchh-----hchhhhhcCCceeeEeccCCCCHHHHHHHHHHHHHh
Q 035561 599 ATTRNIK-----QIDEALQRPGRMDRIFNLQKPTQSEREKILRIAAQE 641 (979)
Q Consensus 599 ATTN~pe-----~LDpALlRpgRFd~~I~~~~Pd~eeR~~IL~~~l~~ 641 (979)
+|+|..+ .+++++++ ||+..+.++.|+.+++.+|++.++..
T Consensus 155 at~np~~~~~~~~l~~~l~~--Rf~~~i~i~~p~~~~~~~il~~~~~~ 200 (331)
T 2r44_A 155 ATQNPVEQEGTYPLPEAQVD--RFMMKIHLTYLDKESELEVMRRVSNM 200 (331)
T ss_dssp EEECTTCCSCCCCCCHHHHT--TSSEEEECCCCCHHHHHHHHHHHHCT
T ss_pred EecCCCcccCcccCCHHHHh--heeEEEEcCCCCHHHHHHHHHhcccc
Confidence 8888543 38999999 99989999999999999999998764
No 64
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.58 E-value=1.7e-14 Score=156.20 Aligned_cols=178 Identities=16% Similarity=0.142 Sum_probs=128.7
Q ss_pred CCCCCCCCcccCcHHHHHHHHHHHHhhcChhHHHhcCCCCCceeEecCCCCCChHHHHHHHHHHc-----CCCEEEeech
Q 035561 448 KNPPIPLKDFASVESMREEINEVVAFLQNPSAFQEMGARAPRGVLIVGERGTGKTSLALAIAAEA-----RVPVVNVEAQ 522 (979)
Q Consensus 448 ~~~~~~f~DIvGleevke~L~eiV~~L~~p~~f~~lG~~~P~gVLL~GPPGTGKTtLArAlA~el-----g~~~i~Is~s 522 (979)
+.++.+|++++|.++.++.|...+.. .+.|. +||+||||||||++|+++|+.+ +.+++.++++
T Consensus 14 ~~~p~~~~~~~g~~~~~~~l~~~l~~-----------~~~~~-~ll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~~~~~ 81 (323)
T 1sxj_B 14 KYRPQVLSDIVGNKETIDRLQQIAKD-----------GNMPH-MIISGMPGIGKTTSVHCLAHELLGRSYADGVLELNAS 81 (323)
T ss_dssp HTCCSSGGGCCSCTHHHHHHHHHHHS-----------CCCCC-EEEECSTTSSHHHHHHHHHHHHHGGGHHHHEEEECTT
T ss_pred hcCCCCHHHHHCCHHHHHHHHHHHHc-----------CCCCe-EEEECcCCCCHHHHHHHHHHHhcCCcccCCEEEecCc
Confidence 45677899999999999988866531 12334 9999999999999999999986 3567888876
Q ss_pred hhhhhhhcccchhhHHHHHHHHH-------hcCCeEEEEcCccccccccccccCCCchhhHHHHHHHHhhhcccccCCeE
Q 035561 523 ELEAGLWVGQSASNVRELFQTAR-------DLAPVIIFVEDFDLFAGVRGQFIHTKQQDHESFINQLLVELDGFEKQDGV 595 (979)
Q Consensus 523 dL~~~~~vG~~~~~Ir~lF~~A~-------~~aP~ILfIDEIDaL~~~r~~~~~~~~~~~~~iln~LL~~LDg~~~~~~V 595 (979)
+.. +...+++++.... ...++||+|||+|.+.. ...+.|+..++.. ..++
T Consensus 82 ~~~-------~~~~i~~~~~~~~~~~~~~~~~~~~viiiDe~~~l~~--------------~~~~~L~~~le~~--~~~~ 138 (323)
T 1sxj_B 82 DDR-------GIDVVRNQIKHFAQKKLHLPPGKHKIVILDEADSMTA--------------GAQQALRRTMELY--SNST 138 (323)
T ss_dssp SCC-------SHHHHHTHHHHHHHBCCCCCTTCCEEEEEESGGGSCH--------------HHHHTTHHHHHHT--TTTE
T ss_pred ccc-------ChHHHHHHHHHHHhccccCCCCCceEEEEECcccCCH--------------HHHHHHHHHHhcc--CCCc
Confidence 532 1234555555544 22489999999998732 2234455555542 3456
Q ss_pred EEEecccchhhchhhhhcCCceeeEeccCCCCHHHHHHHHHHHHHhccchhhhhhhhHHHHHHHcCCCCH
Q 035561 596 VLMATTRNIKQIDEALQRPGRMDRIFNLQKPTQSEREKILRIAAQETMDEELIDLVDWRKVAEKTALLRP 665 (979)
Q Consensus 596 iVIATTN~pe~LDpALlRpgRFd~~I~~~~Pd~eeR~~IL~~~l~~~~~~~l~~dvdL~~LA~~T~Gfsg 665 (979)
.+|.+||.+..+++++++ |+. .+.|++|+.+++.++++..++... ...++..+..+++.+.|...
T Consensus 139 ~~il~~~~~~~l~~~l~s--r~~-~i~~~~~~~~~~~~~l~~~~~~~~--~~~~~~~~~~l~~~~~G~~r 203 (323)
T 1sxj_B 139 RFAFACNQSNKIIEPLQS--QCA-ILRYSKLSDEDVLKRLLQIIKLED--VKYTNDGLEAIIFTAEGDMR 203 (323)
T ss_dssp EEEEEESCGGGSCHHHHT--TSE-EEECCCCCHHHHHHHHHHHHHHHT--CCBCHHHHHHHHHHHTTCHH
T ss_pred eEEEEeCChhhchhHHHh--hce-EEeecCCCHHHHHHHHHHHHHHcC--CCCCHHHHHHHHHHcCCCHH
Confidence 677788999999999999 664 899999999999999999886532 12334457788888877433
No 65
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=99.58 E-value=1e-14 Score=178.19 Aligned_cols=196 Identities=16% Similarity=0.193 Sum_probs=135.3
Q ss_pred CcccCcHHHHHHHHHHHHhhcChhHHHhcCCC---CC-ceeEecCCCCCChHHHHHHHHHHcCCCEEEeechhhhhh---
Q 035561 455 KDFASVESMREEINEVVAFLQNPSAFQEMGAR---AP-RGVLIVGERGTGKTSLALAIAAEARVPVVNVEAQELEAG--- 527 (979)
Q Consensus 455 ~DIvGleevke~L~eiV~~L~~p~~f~~lG~~---~P-~gVLL~GPPGTGKTtLArAlA~elg~~~i~Is~sdL~~~--- 527 (979)
++++|++++++.+...+... ..|.. .| .++||+||||||||++|+++|+.++.+++.++|+++...
T Consensus 458 ~~v~g~~~~~~~l~~~i~~~-------~~g~~~~~~p~~~~ll~G~~GtGKT~la~~la~~l~~~~~~i~~s~~~~~~~~ 530 (758)
T 1r6b_X 458 MLVFGQDKAIEALTEAIKMA-------RAGLGHEHKPVGSFLFAGPTGVGKTEVTVQLSKALGIELLRFDMSEYMERHTV 530 (758)
T ss_dssp TTSCSCHHHHHHHHHHHHHH-------HTTCSCTTSCSEEEEEECSTTSSHHHHHHHHHHHHTCEEEEEEGGGCSSSSCC
T ss_pred hhccCHHHHHHHHHHHHHHH-------hcccCCCCCCceEEEEECCCCCcHHHHHHHHHHHhcCCEEEEechhhcchhhH
Confidence 35788888888877665432 22432 23 479999999999999999999999999999999987531
Q ss_pred -h-------hcccchhhHHHHHHHHHhcCCeEEEEcCccccccccccccCCCchhhHHHHHHHHhhhcccc--c------
Q 035561 528 -L-------WVGQSASNVRELFQTARDLAPVIIFVEDFDLFAGVRGQFIHTKQQDHESFINQLLVELDGFE--K------ 591 (979)
Q Consensus 528 -~-------~vG~~~~~Ir~lF~~A~~~aP~ILfIDEIDaL~~~r~~~~~~~~~~~~~iln~LL~~LDg~~--~------ 591 (979)
. |+|..... .+....+...++||||||||.+ ...+.+.|+..||.-. .
T Consensus 531 ~~l~g~~~g~~g~~~~~--~l~~~~~~~~~~vl~lDEi~~~--------------~~~~~~~Ll~~le~~~~~~~~g~~~ 594 (758)
T 1r6b_X 531 SRLIGAPPGYVGFDQGG--LLTDAVIKHPHAVLLLDEIEKA--------------HPDVFNILLQVMDNGTLTDNNGRKA 594 (758)
T ss_dssp SSSCCCCSCSHHHHHTT--HHHHHHHHCSSEEEEEETGGGS--------------CHHHHHHHHHHHHHSEEEETTTEEE
T ss_pred hhhcCCCCCCcCccccc--hHHHHHHhCCCcEEEEeCcccc--------------CHHHHHHHHHHhcCcEEEcCCCCEE
Confidence 1 33322221 2344445556799999999976 2446777777777421 0
Q ss_pred -CCeEEEEecccchh-------------------------hchhhhhcCCceeeEeccCCCCHHHHHHHHHHHHHhccc-
Q 035561 592 -QDGVVLMATTRNIK-------------------------QIDEALQRPGRMDRIFNLQKPTQSEREKILRIAAQETMD- 644 (979)
Q Consensus 592 -~~~ViVIATTN~pe-------------------------~LDpALlRpgRFd~~I~~~~Pd~eeR~~IL~~~l~~~~~- 644 (979)
-.+++||+|||... .++|+|++ ||+..|.|++|+.+++..|++.++.....
T Consensus 595 ~~~~~~iI~tsN~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~--R~~~~i~~~~l~~~~~~~i~~~~l~~~~~~ 672 (758)
T 1r6b_X 595 DFRNVVLVMTTNAGVRETERKSIGLIHQDNSTDAMEEIKKIFTPEFRN--RLDNIIWFDHLSTDVIHQVVDKFIVELQVQ 672 (758)
T ss_dssp ECTTEEEEEEECSSCC-----------------CHHHHHHHSCHHHHT--TCSEEEECCCCCHHHHHHHHHHHHHHHHHH
T ss_pred ecCCeEEEEecCcchhhhhhcccCccccchHHHHHHHHHHhcCHHHHh--hCCcceeeCCCCHHHHHHHHHHHHHHHHHH
Confidence 13578999999743 67899998 99999999999999999999998864310
Q ss_pred ------hhhhhhhhHHHHHHHc--CCCCHHHHHHHHHHH
Q 035561 645 ------EELIDLVDWRKVAEKT--ALLRPIELKLVPVAL 675 (979)
Q Consensus 645 ------~~l~~dvdL~~LA~~T--~GfsgaDL~~Lv~aa 675 (979)
....++..+..|++.. ..+...+|.++++.+
T Consensus 673 ~~~~~~~~~~~~~a~~~l~~~~~~~~~g~R~l~~~i~~~ 711 (758)
T 1r6b_X 673 LDQKGVSLEVSQEARNWLAEKGYDRAMGARPMARVIQDN 711 (758)
T ss_dssp HHHTTEEEEECHHHHHHHHHHHCBTTTBTTTHHHHHHHH
T ss_pred HHHCCcEEEeCHHHHHHHHHhCCCcCCCchHHHHHHHHH
Confidence 0112333455566543 344566777665443
No 66
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.58 E-value=2.2e-14 Score=157.69 Aligned_cols=176 Identities=18% Similarity=0.191 Sum_probs=124.3
Q ss_pred CCCCCCCCcccCcHHHHHHHHHHHHhhcChhHHHhcCCCCCceeEecCCCCCChHHHHHHHHHHcC------CCEEEeec
Q 035561 448 KNPPIPLKDFASVESMREEINEVVAFLQNPSAFQEMGARAPRGVLIVGERGTGKTSLALAIAAEAR------VPVVNVEA 521 (979)
Q Consensus 448 ~~~~~~f~DIvGleevke~L~eiV~~L~~p~~f~~lG~~~P~gVLL~GPPGTGKTtLArAlA~elg------~~~i~Is~ 521 (979)
++++.+|++++|.+++++.|...+. . ..+.++||+||||||||++|+++|+.++ ..++.+++
T Consensus 30 k~~p~~~~~i~g~~~~~~~l~~~l~---~---------~~~~~~ll~G~~G~GKT~la~~la~~l~~~~~~~~~~~~~~~ 97 (353)
T 1sxj_D 30 KYRPKNLDEVTAQDHAVTVLKKTLK---S---------ANLPHMLFYGPPGTGKTSTILALTKELYGPDLMKSRILELNA 97 (353)
T ss_dssp HTCCSSTTTCCSCCTTHHHHHHHTT---C---------TTCCCEEEECSTTSSHHHHHHHHHHHHHHHHHHTTSEEEECS
T ss_pred hcCCCCHHHhhCCHHHHHHHHHHHh---c---------CCCCEEEEECCCCCCHHHHHHHHHHHhCCCcccccceEEEcc
Confidence 5678899999999998888775431 1 1123499999999999999999999864 46888888
Q ss_pred hhhhhhhhcccchhhHHHHHHHHH----------------hcCCeEEEEcCccccccccccccCCCchhhHHHHHHHHhh
Q 035561 522 QELEAGLWVGQSASNVRELFQTAR----------------DLAPVIIFVEDFDLFAGVRGQFIHTKQQDHESFINQLLVE 585 (979)
Q Consensus 522 sdL~~~~~vG~~~~~Ir~lF~~A~----------------~~aP~ILfIDEIDaL~~~r~~~~~~~~~~~~~iln~LL~~ 585 (979)
++... . ..+++.+.... ...+.||||||+|.+.+ ...+.|+..
T Consensus 98 ~~~~~---~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vliiDE~~~l~~--------------~~~~~Ll~~ 156 (353)
T 1sxj_D 98 SDERG---I----SIVREKVKNFARLTVSKPSKHDLENYPCPPYKIIILDEADSMTA--------------DAQSALRRT 156 (353)
T ss_dssp SSCCC---H----HHHTTHHHHHHHSCCCCCCTTHHHHSCCCSCEEEEETTGGGSCH--------------HHHHHHHHH
T ss_pred ccccc---h----HHHHHHHHHHhhhcccccchhhcccCCCCCceEEEEECCCccCH--------------HHHHHHHHH
Confidence 76421 1 11222221111 12457999999998732 223556666
Q ss_pred hcccccCCeEEEEecccchhhchhhhhcCCceeeEeccCCCCHHHHHHHHHHHHHhccchhhhhhhhHHHHHHHcCCC
Q 035561 586 LDGFEKQDGVVLMATTRNIKQIDEALQRPGRMDRIFNLQKPTQSEREKILRIAAQETMDEELIDLVDWRKVAEKTALL 663 (979)
Q Consensus 586 LDg~~~~~~ViVIATTN~pe~LDpALlRpgRFd~~I~~~~Pd~eeR~~IL~~~l~~~~~~~l~~dvdL~~LA~~T~Gf 663 (979)
|+.... ...+|.+||.+..+++++++ |+. .+.+++|+.++...+++..+.... ...++..+..+++.+.|.
T Consensus 157 le~~~~--~~~~il~~~~~~~l~~~l~s--R~~-~i~~~~~~~~~~~~~l~~~~~~~~--~~i~~~~l~~l~~~~~G~ 227 (353)
T 1sxj_D 157 METYSG--VTRFCLICNYVTRIIDPLAS--QCS-KFRFKALDASNAIDRLRFISEQEN--VKCDDGVLERILDISAGD 227 (353)
T ss_dssp HHHTTT--TEEEEEEESCGGGSCHHHHH--HSE-EEECCCCCHHHHHHHHHHHHHTTT--CCCCHHHHHHHHHHTSSC
T ss_pred HHhcCC--CceEEEEeCchhhCcchhhc--cCc-eEEeCCCCHHHHHHHHHHHHHHhC--CCCCHHHHHHHHHHcCCC
Confidence 665432 34556678899999999999 875 889999999999999999886532 123445678899988874
No 67
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=99.57 E-value=1.2e-13 Score=152.95 Aligned_cols=188 Identities=16% Similarity=0.205 Sum_probs=135.2
Q ss_pred CCCCCCCCcccCcHHHHHHHHHHHHhhcChhHHHhcCCCCCceeEecCCCCCChHHHHHHHHHHcCCC------------
Q 035561 448 KNPPIPLKDFASVESMREEINEVVAFLQNPSAFQEMGARAPRGVLIVGERGTGKTSLALAIAAEARVP------------ 515 (979)
Q Consensus 448 ~~~~~~f~DIvGleevke~L~eiV~~L~~p~~f~~lG~~~P~gVLL~GPPGTGKTtLArAlA~elg~~------------ 515 (979)
++++.+|++++|.+++++.|...+.. .+.|..+||+||||||||++|+++|+.++..
T Consensus 9 k~rp~~~~~~vg~~~~~~~L~~~l~~-----------~~~~~~~ll~G~~G~GKT~la~~la~~l~~~~~~~~~~~~~~~ 77 (373)
T 1jr3_A 9 KWRPQTFADVVGQEHVLTALANGLSL-----------GRIHHAYLFSGTRGVGKTSIARLLAKGLNCETGITATPCGVCD 77 (373)
T ss_dssp HTCCCSTTTSCSCHHHHHHHHHHHHH-----------TCCCSEEEEESCTTSSHHHHHHHHHHHHSCTTCSCSSCCSSSH
T ss_pred hhCCCchhhccCcHHHHHHHHHHHHh-----------CCCCeEEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCcccH
Confidence 45677899999999999988876532 2345679999999999999999999988642
Q ss_pred ------------EEEeechhhhhhhhcccchhhHHHHHHHHHh----cCCeEEEEcCccccccccccccCCCchhhHHHH
Q 035561 516 ------------VVNVEAQELEAGLWVGQSASNVRELFQTARD----LAPVIIFVEDFDLFAGVRGQFIHTKQQDHESFI 579 (979)
Q Consensus 516 ------------~i~Is~sdL~~~~~vG~~~~~Ir~lF~~A~~----~aP~ILfIDEIDaL~~~r~~~~~~~~~~~~~il 579 (979)
++.++++. ......++.+++.+.. ..+.||+|||+|.+. ....
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~l~~~~~~~~~~~~~~vliiDe~~~l~--------------~~~~ 136 (373)
T 1jr3_A 78 NCREIEQGRFVDLIEIDAAS-------RTKVEDTRDLLDNVQYAPARGRFKVYLIDEVHMLS--------------RHSF 136 (373)
T ss_dssp HHHHHHTSCCSSCEEEETTC-------SCCSSCHHHHHHHTTSCCSSSSSEEEEEECGGGSC--------------HHHH
T ss_pred HHHHHhccCCCceEEecccc-------cCCHHHHHHHHHHHhhccccCCeEEEEEECcchhc--------------HHHH
Confidence 12222111 1223457777777653 247899999999872 2345
Q ss_pred HHHHhhhcccccCCeEEEEecccchhhchhhhhcCCceeeEeccCCCCHHHHHHHHHHHHHhccchhhhhhhhHHHHHHH
Q 035561 580 NQLLVELDGFEKQDGVVLMATTRNIKQIDEALQRPGRMDRIFNLQKPTQSEREKILRIAAQETMDEELIDLVDWRKVAEK 659 (979)
Q Consensus 580 n~LL~~LDg~~~~~~ViVIATTN~pe~LDpALlRpgRFd~~I~~~~Pd~eeR~~IL~~~l~~~~~~~l~~dvdL~~LA~~ 659 (979)
+.|+..++.. ...+++|.+|+.+..+++++++ |+ ..+.+++|+.++..++++..++.... ..++..+..+++.
T Consensus 137 ~~Ll~~le~~--~~~~~~Il~~~~~~~l~~~l~s--r~-~~i~~~~l~~~~~~~~l~~~~~~~~~--~~~~~a~~~l~~~ 209 (373)
T 1jr3_A 137 NALLKTLEEP--PEHVKFLLATTDPQKLPVTILS--RC-LQFHLKALDVEQIRHQLEHILNEEHI--AHEPRALQLLARA 209 (373)
T ss_dssp HHHHHHHHSC--CSSEEEEEEESCGGGSCHHHHT--TS-EEEECCCCCHHHHHHHHHHHHHHHTC--CBCHHHHHHHHHH
T ss_pred HHHHHHHhcC--CCceEEEEEeCChHhCcHHHHh--he-eEeeCCCCCHHHHHHHHHHHHHHcCC--CCCHHHHHHHHHH
Confidence 6677766643 3467788888888899999998 65 78999999999999999998875421 2234457788999
Q ss_pred cCCCCHHHHHHHHHHH
Q 035561 660 TALLRPIELKLVPVAL 675 (979)
Q Consensus 660 T~GfsgaDL~~Lv~aa 675 (979)
+.| ++.++.+++..+
T Consensus 210 ~~G-~~r~~~~~l~~~ 224 (373)
T 1jr3_A 210 AEG-SLRDALSLTDQA 224 (373)
T ss_dssp SSS-CHHHHHHHHHHH
T ss_pred CCC-CHHHHHHHHHHH
Confidence 988 566666665444
No 68
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=99.56 E-value=5e-14 Score=155.47 Aligned_cols=207 Identities=17% Similarity=0.227 Sum_probs=136.3
Q ss_pred CCCCCCcccCcHHHHHHHHHHHHhhcChhHHHhcCCCCCceeEecCCCCCChHHHHHHHHHHc------CCCEEEeechh
Q 035561 450 PPIPLKDFASVESMREEINEVVAFLQNPSAFQEMGARAPRGVLIVGERGTGKTSLALAIAAEA------RVPVVNVEAQE 523 (979)
Q Consensus 450 ~~~~f~DIvGleevke~L~eiV~~L~~p~~f~~lG~~~P~gVLL~GPPGTGKTtLArAlA~el------g~~~i~Is~sd 523 (979)
+...+++++|.++..+.|.+.+.... ....+.+++|+||||||||++++++++.+ +.+++.++|..
T Consensus 15 ~~~~p~~~~gr~~e~~~l~~~l~~~~--------~~~~~~~vli~G~~G~GKTtl~~~l~~~~~~~~~~~~~~~~i~~~~ 86 (386)
T 2qby_A 15 PDYIPDELPHREDQIRKIASILAPLY--------REEKPNNIFIYGLTGTGKTAVVKFVLSKLHKKFLGKFKHVYINTRQ 86 (386)
T ss_dssp SSCCCSCCTTCHHHHHHHHHSSGGGG--------GTCCCCCEEEEECTTSSHHHHHHHHHHHHHHHTCSSCEEEEEEHHH
T ss_pred CccCCCCCCChHHHHHHHHHHHHHHH--------cCCCCCeEEEECCCCCCHHHHHHHHHHHHHHHhcCCceEEEEECCC
Confidence 34456899999988887775443211 12446789999999999999999999988 88999999875
Q ss_pred hhhh-----h----------hcccchhh-HHHHHHHHHhcC-CeEEEEcCccccccccccccCCCchhhHHHHHHHHhhh
Q 035561 524 LEAG-----L----------WVGQSASN-VRELFQTARDLA-PVIIFVEDFDLFAGVRGQFIHTKQQDHESFINQLLVEL 586 (979)
Q Consensus 524 L~~~-----~----------~vG~~~~~-Ir~lF~~A~~~a-P~ILfIDEIDaL~~~r~~~~~~~~~~~~~iln~LL~~L 586 (979)
.... . ..+..... ...++....... |+||+|||++.+....+ ...+..|+..+
T Consensus 87 ~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlilDE~~~l~~~~~----------~~~l~~l~~~~ 156 (386)
T 2qby_A 87 IDTPYRVLADLLESLDVKVPFTGLSIAELYRRLVKAVRDYGSQVVIVLDEIDAFVKKYN----------DDILYKLSRIN 156 (386)
T ss_dssp HCSHHHHHHHHTTTTSCCCCSSSCCHHHHHHHHHHHHHTCCSCEEEEEETHHHHHHSSC----------STHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHhccCCeEEEEEcChhhhhccCc----------CHHHHHHhhch
Confidence 3210 0 01111222 344444444433 89999999998853211 23455666666
Q ss_pred cccccCCeEEEEecccch---hhchhhhhcCCcee-eEeccCCCCHHHHHHHHHHHHHhccchhhhhhhhHHHHHHHcC-
Q 035561 587 DGFEKQDGVVLMATTRNI---KQIDEALQRPGRMD-RIFNLQKPTQSEREKILRIAAQETMDEELIDLVDWRKVAEKTA- 661 (979)
Q Consensus 587 Dg~~~~~~ViVIATTN~p---e~LDpALlRpgRFd-~~I~~~~Pd~eeR~~IL~~~l~~~~~~~l~~dvdL~~LA~~T~- 661 (979)
+.+ ...++.+|++||.+ +.+++.+.+ ||. +.+.+++|+.+++.+|++..+.........++..+..+++.+.
T Consensus 157 ~~~-~~~~~~~I~~~~~~~~~~~~~~~~~~--r~~~~~i~l~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~l~~~~~~ 233 (386)
T 2qby_A 157 SEV-NKSKISFIGITNDVKFVDLLDPRVKS--SLSEEEIIFPPYNAEELEDILTKRAQMAFKPGVLPDNVIKLCAALAAR 233 (386)
T ss_dssp HSC-CC--EEEEEEESCGGGGGGCTTHHHH--TTTTEEEEECCCCHHHHHHHHHHHHHHHBCSSCSCHHHHHHHHHHHHH
T ss_pred hhc-CCCeEEEEEEECCCChHhhhCHHHhc--cCCCeeEEeCCCCHHHHHHHHHHHHHhhccCCCCCHHHHHHHHHHHHH
Confidence 544 34567888888876 567888888 665 5899999999999999999876432112233445667777776
Q ss_pred --CCCHHHHHHHHHHHhhh
Q 035561 662 --LLRPIELKLVPVALEGS 678 (979)
Q Consensus 662 --GfsgaDL~~Lv~aa~~a 678 (979)
| .+..+.++++.+...
T Consensus 234 ~~G-~~r~~~~ll~~a~~~ 251 (386)
T 2qby_A 234 EHG-DARRALDLLRVSGEI 251 (386)
T ss_dssp TTC-CHHHHHHHHHHHHHH
T ss_pred hcC-CHHHHHHHHHHHHHH
Confidence 6 344455565544433
No 69
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=99.55 E-value=1.3e-13 Score=152.85 Aligned_cols=194 Identities=18% Similarity=0.231 Sum_probs=135.4
Q ss_pred CCCCCCcccCcHHHHHHHHHHHHhhcChhHHHhcCCCCCceeEecCCCCCChHHHHHHHHHHcCCCEEEeechhhhhhhh
Q 035561 450 PPIPLKDFASVESMREEINEVVAFLQNPSAFQEMGARAPRGVLIVGERGTGKTSLALAIAAEARVPVVNVEAQELEAGLW 529 (979)
Q Consensus 450 ~~~~f~DIvGleevke~L~eiV~~L~~p~~f~~lG~~~P~gVLL~GPPGTGKTtLArAlA~elg~~~i~Is~sdL~~~~~ 529 (979)
.+.+|++++|.+.+++.|...+..-.. ....+.+++|+|||||||||+|+++|++++.++...+++.+..
T Consensus 20 r~~~l~~~~g~~~~~~~l~~~i~~~~~-------~~~~~~~~ll~Gp~G~GKTTLa~~ia~~l~~~~~~~sg~~~~~--- 89 (334)
T 1in4_A 20 RPKSLDEFIGQENVKKKLSLALEAAKM-------RGEVLDHVLLAGPPGLGKTTLAHIIASELQTNIHVTSGPVLVK--- 89 (334)
T ss_dssp SCSSGGGCCSCHHHHHHHHHHHHHHHH-------HTCCCCCEEEESSTTSSHHHHHHHHHHHHTCCEEEEETTTCCS---
T ss_pred CCccHHHccCcHHHHHHHHHHHHHHHh-------cCCCCCeEEEECCCCCcHHHHHHHHHHHhCCCEEEEechHhcC---
Confidence 445899999999888888765543211 1234577999999999999999999999999988777755431
Q ss_pred cccchhhHHHHHHHHHhcCCeEEEEcCccccccccccccCCCchhhHHHHHHHHhhhcccc----------------cCC
Q 035561 530 VGQSASNVRELFQTARDLAPVIIFVEDFDLFAGVRGQFIHTKQQDHESFINQLLVELDGFE----------------KQD 593 (979)
Q Consensus 530 vG~~~~~Ir~lF~~A~~~aP~ILfIDEIDaL~~~r~~~~~~~~~~~~~iln~LL~~LDg~~----------------~~~ 593 (979)
...+..++... ..++|+||||++.+.+. . .+.|+..++.+. .-.
T Consensus 90 ----~~~l~~~~~~~--~~~~v~~iDE~~~l~~~-----------~---~e~L~~~~~~~~~~i~~~~~~~~~~i~~~l~ 149 (334)
T 1in4_A 90 ----QGDMAAILTSL--ERGDVLFIDEIHRLNKA-----------V---EELLYSAIEDFQIDIMIGKGPSAKSIRIDIQ 149 (334)
T ss_dssp ----HHHHHHHHHHC--CTTCEEEEETGGGCCHH-----------H---HHHHHHHHHTSCCCC---------------C
T ss_pred ----HHHHHHHHHHc--cCCCEEEEcchhhcCHH-----------H---HHHHHHHHHhcccceeeccCcccccccccCC
Confidence 12233333321 25689999999988421 1 122222222211 012
Q ss_pred eEEEEecccchhhchhhhhcCCceeeEeccCCCCHHHHHHHHHHHHHhccchhhhhhhhHHHHHHHcCCCCHHHHHHHHH
Q 035561 594 GVVLMATTRNIKQIDEALQRPGRMDRIFNLQKPTQSEREKILRIAAQETMDEELIDLVDWRKVAEKTALLRPIELKLVPV 673 (979)
Q Consensus 594 ~ViVIATTN~pe~LDpALlRpgRFd~~I~~~~Pd~eeR~~IL~~~l~~~~~~~l~~dvdL~~LA~~T~GfsgaDL~~Lv~ 673 (979)
.+.++++|+++..|++++++ ||...+.+++|+.+++.+|++...+... ...++..+..||+++.| ++.++.++++
T Consensus 150 ~~~li~at~~~~~Ls~~l~s--R~~l~~~Ld~~~~~~l~~iL~~~~~~~~--~~~~~~~~~~ia~~~~G-~~R~a~~ll~ 224 (334)
T 1in4_A 150 PFTLVGATTRSGLLSSPLRS--RFGIILELDFYTVKELKEIIKRAASLMD--VEIEDAAAEMIAKRSRG-TPRIAIRLTK 224 (334)
T ss_dssp CCEEEEEESCGGGSCHHHHT--TCSEEEECCCCCHHHHHHHHHHHHHHTT--CCBCHHHHHHHHHTSTT-CHHHHHHHHH
T ss_pred CeEEEEecCCcccCCHHHHH--hcCceeeCCCCCHHHHHHHHHHHHHHcC--CCcCHHHHHHHHHhcCC-ChHHHHHHHH
Confidence 35677899999999999999 9988899999999999999998876532 12344457889999988 5567777766
Q ss_pred HHhhh
Q 035561 674 ALEGS 678 (979)
Q Consensus 674 aa~~a 678 (979)
.+...
T Consensus 225 ~~~~~ 229 (334)
T 1in4_A 225 RVRDM 229 (334)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 55433
No 70
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=99.52 E-value=3.6e-13 Score=149.55 Aligned_cols=205 Identities=13% Similarity=0.058 Sum_probs=136.1
Q ss_pred CCCCCcccCcHHHHHHHHHHHHhhcChhHHHhcCCCCCc--eeEecCCCCCChHHHHHHHHHHc----CCCEEEeechhh
Q 035561 451 PIPLKDFASVESMREEINEVVAFLQNPSAFQEMGARAPR--GVLIVGERGTGKTSLALAIAAEA----RVPVVNVEAQEL 524 (979)
Q Consensus 451 ~~~f~DIvGleevke~L~eiV~~L~~p~~f~~lG~~~P~--gVLL~GPPGTGKTtLArAlA~el----g~~~i~Is~sdL 524 (979)
...+++++|.++..+.|.+.+..... | ..+. +++|+||||||||++++++++.+ +.+++.++|+..
T Consensus 13 ~~~p~~l~gr~~~~~~l~~~l~~~~~-------~-~~~~~~~~li~G~~G~GKTtl~~~l~~~~~~~~~~~~~~i~~~~~ 84 (389)
T 1fnn_A 13 SYVPKRLPHREQQLQQLDILLGNWLR-------N-PGHHYPRATLLGRPGTGKTVTLRKLWELYKDKTTARFVYINGFIY 84 (389)
T ss_dssp TCCCSCCTTCHHHHHHHHHHHHHHHH-------S-TTSSCCEEEEECCTTSSHHHHHHHHHHHHTTSCCCEEEEEETTTC
T ss_pred ccCCCCCCChHHHHHHHHHHHHHHHc-------C-CCCCCCeEEEECCCCCCHHHHHHHHHHHHhhhcCeeEEEEeCccC
Confidence 34458999999988888876654211 1 2234 89999999999999999999998 678999998654
Q ss_pred hhh-hh--------------cccchhhHH-HHHHHHHh-cCCeEEEEcCccccccccccccCCCchhhHHHHHHHHhhhc
Q 035561 525 EAG-LW--------------VGQSASNVR-ELFQTARD-LAPVIIFVEDFDLFAGVRGQFIHTKQQDHESFINQLLVELD 587 (979)
Q Consensus 525 ~~~-~~--------------vG~~~~~Ir-~lF~~A~~-~aP~ILfIDEIDaL~~~r~~~~~~~~~~~~~iln~LL~~LD 587 (979)
... .. .+.....+. .+...... ..|.||+|||+|.+ ....++.|+..++
T Consensus 85 ~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlilDE~~~l--------------~~~~~~~L~~~~~ 150 (389)
T 1fnn_A 85 RNFTAIIGEIARSLNIPFPRRGLSRDEFLALLVEHLRERDLYMFLVLDDAFNL--------------APDILSTFIRLGQ 150 (389)
T ss_dssp CSHHHHHHHHHHHTTCCCCSSCCCHHHHHHHHHHHHHHTTCCEEEEEETGGGS--------------CHHHHHHHHHHTT
T ss_pred CCHHHHHHHHHHHhCccCCCCCCCHHHHHHHHHHHHhhcCCeEEEEEECcccc--------------chHHHHHHHHHHH
Confidence 210 00 111122222 22222222 35899999999977 1234556666665
Q ss_pred cccc--CCeEEEEecccch---hhchhhhhcCCceee-EeccCCCCHHHHHHHHHHHHHhccchhhhhhhhHHHHHHHcC
Q 035561 588 GFEK--QDGVVLMATTRNI---KQIDEALQRPGRMDR-IFNLQKPTQSEREKILRIAAQETMDEELIDLVDWRKVAEKTA 661 (979)
Q Consensus 588 g~~~--~~~ViVIATTN~p---e~LDpALlRpgRFd~-~I~~~~Pd~eeR~~IL~~~l~~~~~~~l~~dvdL~~LA~~T~ 661 (979)
.+.. ..++.+|++||.+ +.+++.+.+ ||.. .+.|++++.++..++++..+.........++..+..+++.+.
T Consensus 151 ~~~~~~~~~~~iI~~~~~~~~~~~l~~~~~~--r~~~~~i~~~pl~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~ 228 (389)
T 1fnn_A 151 EADKLGAFRIALVIVGHNDAVLNNLDPSTRG--IMGKYVIRFSPYTKDQIFDILLDRAKAGLAEGSYSEDILQMIADITG 228 (389)
T ss_dssp CHHHHSSCCEEEEEEESSTHHHHTSCHHHHH--HHTTCEEECCCCBHHHHHHHHHHHHHHHBCTTSSCHHHHHHHHHHHS
T ss_pred hCCCCCcCCEEEEEEECCchHHHHhCHHhhh--cCCCceEEeCCCCHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHh
Confidence 4432 1467888888887 677888888 8775 899999999999999999887522112345556788899884
Q ss_pred CC--------CHHHHHHHHHHHhhhh
Q 035561 662 LL--------RPIELKLVPVALEGSA 679 (979)
Q Consensus 662 Gf--------sgaDL~~Lv~aa~~aa 679 (979)
+. .+..+.++++.+...+
T Consensus 229 ~~~~~~~~~G~~r~~~~~l~~a~~~a 254 (389)
T 1fnn_A 229 AQTPLDTNRGDARLAIDILYRSAYAA 254 (389)
T ss_dssp BSSTTCTTSCCHHHHHHHHHHHHHHH
T ss_pred hcccCCCCCCcHHHHHHHHHHHHHHH
Confidence 22 4455566665544433
No 71
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.51 E-value=2.7e-13 Score=149.72 Aligned_cols=180 Identities=13% Similarity=0.211 Sum_probs=121.5
Q ss_pred ccCCCCCCCCcccCcHHHHHHHHHHHHhhcChhHHHhcCCCCCceeEecCCCCCChHHHHHHHHHHcCC-----------
Q 035561 446 RVKNPPIPLKDFASVESMREEINEVVAFLQNPSAFQEMGARAPRGVLIVGERGTGKTSLALAIAAEARV----------- 514 (979)
Q Consensus 446 ~v~~~~~~f~DIvGleevke~L~eiV~~L~~p~~f~~lG~~~P~gVLL~GPPGTGKTtLArAlA~elg~----------- 514 (979)
..+++|.+|++++|++++.+.|+..+. . ..+.|. ++|+|||||||||+++++|+++..
T Consensus 5 ~~kyrP~~~~~~vg~~~~~~~l~~~~~--~--------~~~~~~-~ll~Gp~G~GKTtl~~~la~~l~~~~~g~i~~~~~ 73 (354)
T 1sxj_E 5 VDKYRPKSLNALSHNEELTNFLKSLSD--Q--------PRDLPH-LLLYGPNGTGKKTRCMALLESIFGPGVYRLKIDVR 73 (354)
T ss_dssp TTTTCCCSGGGCCSCHHHHHHHHTTTT--C--------TTCCCC-EEEECSTTSSHHHHHHTHHHHHSCTTCCC------
T ss_pred hhccCCCCHHHhcCCHHHHHHHHHHHh--h--------CCCCCe-EEEECCCCCCHHHHHHHHHHHHcCCCCCeEEecce
Confidence 346788899999999998888774330 1 123344 999999999999999999996521
Q ss_pred ------------------CEEEeechhhhhhhhcccchhhHHHHHHHHH--------------hcCCeEEEEcCcccccc
Q 035561 515 ------------------PVVNVEAQELEAGLWVGQSASNVRELFQTAR--------------DLAPVIIFVEDFDLFAG 562 (979)
Q Consensus 515 ------------------~~i~Is~sdL~~~~~vG~~~~~Ir~lF~~A~--------------~~aP~ILfIDEIDaL~~ 562 (979)
+++.+++++.. ......+++.++.+. ...|.||+|||++.+.
T Consensus 74 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~i~~~~~~~~~~~~~~ls~l~~~~~vlilDE~~~L~- 147 (354)
T 1sxj_E 74 QFVTASNRKLELNVVSSPYHLEITPSDMG-----NNDRIVIQELLKEVAQMEQVDFQDSKDGLAHRYKCVIINEANSLT- 147 (354)
T ss_dssp ------------CCEECSSEEEECCC---------CCHHHHHHHHHHHTTTTC------------CCEEEEEECTTSSC-
T ss_pred eecccccccceeeeecccceEEecHhhcC-----CcchHHHHHHHHHHHHhccccccccccccCCCCeEEEEeCccccC-
Confidence 12233322210 001113555555542 2257799999999862
Q ss_pred ccccccCCCchhhHHHHHHHHhhhcccccCCeEEEEecccchhhchhhhhcCCceeeEeccCCCCHHHHHHHHHHHHHhc
Q 035561 563 VRGQFIHTKQQDHESFINQLLVELDGFEKQDGVVLMATTRNIKQIDEALQRPGRMDRIFNLQKPTQSEREKILRIAAQET 642 (979)
Q Consensus 563 ~r~~~~~~~~~~~~~iln~LL~~LDg~~~~~~ViVIATTN~pe~LDpALlRpgRFd~~I~~~~Pd~eeR~~IL~~~l~~~ 642 (979)
....+.|+..|+... .+..+|.+||.++.+++++++ |+ ..+.|++|+.+++.++++..++..
T Consensus 148 -------------~~~~~~L~~~le~~~--~~~~~Il~t~~~~~l~~~l~s--R~-~~~~~~~~~~~~~~~~l~~~~~~~ 209 (354)
T 1sxj_E 148 -------------KDAQAALRRTMEKYS--KNIRLIMVCDSMSPIIAPIKS--QC-LLIRCPAPSDSEISTILSDVVTNE 209 (354)
T ss_dssp -------------HHHHHHHHHHHHHST--TTEEEEEEESCSCSSCHHHHT--TS-EEEECCCCCHHHHHHHHHHHHHHH
T ss_pred -------------HHHHHHHHHHHHhhc--CCCEEEEEeCCHHHHHHHHHh--hc-eEEecCCcCHHHHHHHHHHHHHHc
Confidence 223445666665543 346777788888999999999 77 789999999999999999988754
Q ss_pred cchhhhh-hhhHHHHHHHcCC
Q 035561 643 MDEELID-LVDWRKVAEKTAL 662 (979)
Q Consensus 643 ~~~~l~~-dvdL~~LA~~T~G 662 (979)
.. ..+ +..+..+++.+.|
T Consensus 210 ~~--~~~~~~~l~~i~~~~~G 228 (354)
T 1sxj_E 210 RI--QLETKDILKRIAQASNG 228 (354)
T ss_dssp TC--EECCSHHHHHHHHHHTT
T ss_pred CC--CCCcHHHHHHHHHHcCC
Confidence 21 123 4567888888877
No 72
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=99.51 E-value=7.6e-14 Score=154.72 Aligned_cols=141 Identities=11% Similarity=0.112 Sum_probs=105.8
Q ss_pred CCCCceeEecCCCCCChHHHHHHHHHHc----------CCCEEEeechhhhhh---------hh------cccchhhHHH
Q 035561 485 ARAPRGVLIVGERGTGKTSLALAIAAEA----------RVPVVNVEAQELEAG---------LW------VGQSASNVRE 539 (979)
Q Consensus 485 ~~~P~gVLL~GPPGTGKTtLArAlA~el----------g~~~i~Is~sdL~~~---------~~------vG~~~~~Ir~ 539 (979)
...|.+++|+||||||||++++++++++ +..++++||..+.+. .. .+.....++.
T Consensus 42 ~~~~~~lli~GpPGTGKT~~v~~v~~~L~~~~~~~~~~~~~~v~INc~~~~t~~~~~~~I~~~L~g~~~~~~~~~~~L~~ 121 (318)
T 3te6_A 42 SSQNKLFYITNADDSTKFQLVNDVMDELITSSARKELPIFDYIHIDALELAGMDALYEKIWFAISKENLCGDISLEALNF 121 (318)
T ss_dssp TTCCCEEEEECCCSHHHHHHHHHHHHHHHHTTTTTSSCCEEEEEEETTCCC--HHHHHHHHHHHSCCC--CCCCHHHHHH
T ss_pred CCCCCeEEEECCCCCCHHHHHHHHHHHHHHHhhhccCCceEEEEEeccccCCHHHHHHHHHHHhcCCCCCchHHHHHHHH
Confidence 3567899999999999999999999998 356889998765321 11 2335567888
Q ss_pred HHHHH--HhcCCeEEEEcCccccccccccccCCCchhhHHHHHHHHhhhcccccCCeEEEEecccchh----hchhhhhc
Q 035561 540 LFQTA--RDLAPVIIFVEDFDLFAGVRGQFIHTKQQDHESFINQLLVELDGFEKQDGVVLMATTRNIK----QIDEALQR 613 (979)
Q Consensus 540 lF~~A--~~~aP~ILfIDEIDaL~~~r~~~~~~~~~~~~~iln~LL~~LDg~~~~~~ViVIATTN~pe----~LDpALlR 613 (979)
.|... ....++|++|||+|.|. ...++..|+.... .....++||+++|..+ .|++++++
T Consensus 122 ~f~~~~~~~~~~~ii~lDE~d~l~-------------~q~~L~~l~~~~~--~~~s~~~vI~i~n~~d~~~~~L~~~v~S 186 (318)
T 3te6_A 122 YITNVPKAKKRKTLILIQNPENLL-------------SEKILQYFEKWIS--SKNSKLSIICVGGHNVTIREQINIMPSL 186 (318)
T ss_dssp HHHHSCGGGSCEEEEEEECCSSSC-------------CTHHHHHHHHHHH--CSSCCEEEEEECCSSCCCHHHHHTCHHH
T ss_pred HHHHhhhccCCceEEEEecHHHhh-------------cchHHHHHHhccc--ccCCcEEEEEEecCcccchhhcchhhhc
Confidence 88875 34568999999999985 1234455544322 2345688888888864 46778888
Q ss_pred CCcee-eEeccCCCCHHHHHHHHHHHHHhc
Q 035561 614 PGRMD-RIFNLQKPTQSEREKILRIAAQET 642 (979)
Q Consensus 614 pgRFd-~~I~~~~Pd~eeR~~IL~~~l~~~ 642 (979)
||. ..|.|++++.++..+|++..++..
T Consensus 187 --R~~~~~i~F~pYt~~el~~Il~~Rl~~~ 214 (318)
T 3te6_A 187 --KAHFTEIKLNKVDKNELQQMIITRLKSL 214 (318)
T ss_dssp --HTTEEEEECCCCCHHHHHHHHHHHHHHH
T ss_pred --cCCceEEEeCCCCHHHHHHHHHHHHHhh
Confidence 886 689999999999999999999764
No 73
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=99.49 E-value=1.2e-13 Score=147.31 Aligned_cols=161 Identities=20% Similarity=0.213 Sum_probs=97.2
Q ss_pred CCCCcccCcHHHHHHHHHHHHhhcChhHHHhcCCCCCceeEecCCCCCChHHHHHHHHHHcC---CCEEEeechhhhhhh
Q 035561 452 IPLKDFASVESMREEINEVVAFLQNPSAFQEMGARAPRGVLIVGERGTGKTSLALAIAAEAR---VPVVNVEAQELEAGL 528 (979)
Q Consensus 452 ~~f~DIvGleevke~L~eiV~~L~~p~~f~~lG~~~P~gVLL~GPPGTGKTtLArAlA~elg---~~~i~Is~sdL~~~~ 528 (979)
.+|++++|.+.....+.+.+.... ..+.++||+||||||||++|++++..+. .+++.++|+.+....
T Consensus 3 ~~f~~~ig~~~~~~~~~~~~~~~~----------~~~~~vll~G~~GtGKt~la~~i~~~~~~~~~~~~~v~~~~~~~~~ 72 (265)
T 2bjv_A 3 EYKDNLLGEANSFLEVLEQVSHLA----------PLDKPVLIIGERGTGKELIASRLHYLSSRWQGPFISLNCAALNENL 72 (265)
T ss_dssp -------CCCHHHHHHHHHHHHHT----------TSCSCEEEECCTTSCHHHHHHHHHHTSTTTTSCEEEEEGGGSCHHH
T ss_pred cccccceeCCHHHHHHHHHHHHHh----------CCCCCEEEECCCCCcHHHHHHHHHHhcCccCCCeEEEecCCCChhH
Confidence 478999999988888776665432 2346799999999999999999999875 789999998763211
Q ss_pred ----hcccchh-------hHHHHHHHHHhcCCeEEEEcCccccccccccccCCCchhhHHHHHHHHhhhccc--------
Q 035561 529 ----WVGQSAS-------NVRELFQTARDLAPVIIFVEDFDLFAGVRGQFIHTKQQDHESFINQLLVELDGF-------- 589 (979)
Q Consensus 529 ----~vG~~~~-------~Ir~lF~~A~~~aP~ILfIDEIDaL~~~r~~~~~~~~~~~~~iln~LL~~LDg~-------- 589 (979)
..|.... .....|..+ .+++|||||+|.+.. ...+.|+..|+.-
T Consensus 73 ~~~~l~g~~~~~~~g~~~~~~~~l~~a---~~~~l~lDEi~~l~~--------------~~q~~Ll~~l~~~~~~~~g~~ 135 (265)
T 2bjv_A 73 LDSELFGHEAGAFTGAQKRHPGRFERA---DGGTLFLDELATAPM--------------MVQEKLLRVIEYGELERVGGS 135 (265)
T ss_dssp HHHHHHCCC---------CCCCHHHHT---TTSEEEEESGGGSCH--------------HHHHHHHHHHHHCEECCCCC-
T ss_pred HHHHhcCCcccccccccccccchhhhc---CCcEEEEechHhcCH--------------HHHHHHHHHHHhCCeecCCCc
Confidence 1111100 011223333 358999999998832 2234455555431
Q ss_pred -ccCCeEEEEecccch-h------hchhhhhcCCcee-eEeccCCCCH--HHHHHHHHHHHHh
Q 035561 590 -EKQDGVVLMATTRNI-K------QIDEALQRPGRMD-RIFNLQKPTQ--SEREKILRIAAQE 641 (979)
Q Consensus 590 -~~~~~ViVIATTN~p-e------~LDpALlRpgRFd-~~I~~~~Pd~--eeR~~IL~~~l~~ 641 (979)
.....+.+|+|||.+ . .+++.|.+ ||. ..+.+|+.+. ++...+++.+++.
T Consensus 136 ~~~~~~~~iI~atn~~~~~~~~~~~~~~~L~~--Rl~~~~i~lp~L~~R~~di~~l~~~~l~~ 196 (265)
T 2bjv_A 136 QPLQVNVRLVCATNADLPAMVNEGTFRADLLD--ALAFDVVQLPPLRERESDIMLMAEYFAIQ 196 (265)
T ss_dssp -CEECCCEEEEEESSCHHHHHHHTSSCHHHHH--HHCSEEEECCCGGGCHHHHHHHHHHHHHH
T ss_pred ccccCCeEEEEecCcCHHHHHHcCCccHHHHH--hhcCcEEeCCChhhhhHHHHHHHHHHHHH
Confidence 012346788888873 2 35688888 885 3566665544 4555566655543
No 74
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=99.47 E-value=1.5e-13 Score=170.47 Aligned_cols=197 Identities=19% Similarity=0.233 Sum_probs=133.6
Q ss_pred CcccCcHHHHHHHHHHHHhhcChhHHHhcCCC---CC-ceeEecCCCCCChHHHHHHHHHHc---CCCEEEeechhhhhh
Q 035561 455 KDFASVESMREEINEVVAFLQNPSAFQEMGAR---AP-RGVLIVGERGTGKTSLALAIAAEA---RVPVVNVEAQELEAG 527 (979)
Q Consensus 455 ~DIvGleevke~L~eiV~~L~~p~~f~~lG~~---~P-~gVLL~GPPGTGKTtLArAlA~el---g~~~i~Is~sdL~~~ 527 (979)
++|+|.+++++.+...+.... .|.. .| .++||+||||||||++|+++|..+ +.+++.++|+++...
T Consensus 558 ~~viG~~~a~~~l~~~i~~~~-------~g~~~~~~p~~~vLl~Gp~GtGKT~lA~~la~~~~~~~~~~i~i~~~~~~~~ 630 (854)
T 1qvr_A 558 KRVVGQDEAIRAVADAIRRAR-------AGLKDPNRPIGSFLFLGPTGVGKTELAKTLAATLFDTEEAMIRIDMTEYMEK 630 (854)
T ss_dssp HHSCSCHHHHHHHHHHHHHHG-------GGCSCSSSCSEEEEEBSCSSSSHHHHHHHHHHHHHSSGGGEEEECTTTCCSS
T ss_pred cccCCcHHHHHHHHHHHHHHh-------cccCCCCCCceEEEEECCCCCCHHHHHHHHHHHhcCCCCcEEEEechhccch
Confidence 578999999998887775432 1222 23 489999999999999999999998 789999999887532
Q ss_pred h-----------hcccchhhHHHHHHHHHhcCCeEEEEcCccccccccccccCCCchhhHHHHHHHHhhhcccc------
Q 035561 528 L-----------WVGQSASNVRELFQTARDLAPVIIFVEDFDLFAGVRGQFIHTKQQDHESFINQLLVELDGFE------ 590 (979)
Q Consensus 528 ~-----------~vG~~~~~Ir~lF~~A~~~aP~ILfIDEIDaL~~~r~~~~~~~~~~~~~iln~LL~~LDg~~------ 590 (979)
. |+|... ...+....+...++||||||+|.+ ...+.+.|+..|+.-.
T Consensus 631 ~~~s~l~g~~~~~~G~~~--~g~l~~~~~~~~~~vl~lDEi~~l--------------~~~~~~~Ll~~l~~~~~~~~~g 694 (854)
T 1qvr_A 631 HAVSRLIGAPPGYVGYEE--GGQLTEAVRRRPYSVILFDEIEKA--------------HPDVFNILLQILDDGRLTDSHG 694 (854)
T ss_dssp GGGGGC----------------CHHHHHHHCSSEEEEESSGGGS--------------CHHHHHHHHHHHTTTEECCSSS
T ss_pred hHHHHHcCCCCCCcCccc--cchHHHHHHhCCCeEEEEeccccc--------------CHHHHHHHHHHhccCceECCCC
Confidence 1 112221 122333444455799999999876 3456777888877421
Q ss_pred ---cCCeEEEEecccch--------------------------hhchhhhhcCCceeeEeccCCCCHHHHHHHHHHHHHh
Q 035561 591 ---KQDGVVLMATTRNI--------------------------KQIDEALQRPGRMDRIFNLQKPTQSEREKILRIAAQE 641 (979)
Q Consensus 591 ---~~~~ViVIATTN~p--------------------------e~LDpALlRpgRFd~~I~~~~Pd~eeR~~IL~~~l~~ 641 (979)
.-.+++||+|||.. ..+.|+|++ ||+..+.+++|+.+++..|++.++..
T Consensus 695 ~~vd~~~~iiI~tsn~~~~~~~~~~~~~~~~~~l~~~v~~~~~~~f~~~l~~--Rl~~~i~~~pl~~edi~~i~~~~l~~ 772 (854)
T 1qvr_A 695 RTVDFRNTVIILTSNLGSPLILEGLQKGWPYERIRDEVFKVLQQHFRPEFLN--RLDEIVVFRPLTKEQIRQIVEIQLSY 772 (854)
T ss_dssp CCEECTTEEEEEECCTTHHHHHHHHHTTCCHHHHHHHHHHHHHTTSCHHHHH--TCSBCCBCCCCCHHHHHHHHHHHHHH
T ss_pred CEeccCCeEEEEecCcChHHHhhhcccccchHHHHHHHHHHHHhhCCHHHHH--hcCeEEeCCCCCHHHHHHHHHHHHHH
Confidence 11357899999972 124577777 99999999999999999999998874
Q ss_pred ccc-------hhhhhhhhHHHHHHHcC--CCCHHHHHHHHHHHh
Q 035561 642 TMD-------EELIDLVDWRKVAEKTA--LLRPIELKLVPVALE 676 (979)
Q Consensus 642 ~~~-------~~l~~dvdL~~LA~~T~--GfsgaDL~~Lv~aa~ 676 (979)
... ....++..+..|++..- .+...+|.++++.+.
T Consensus 773 ~~~~~~~~~~~~~~~~~a~~~L~~~~~~~~gn~R~L~~~i~~~~ 816 (854)
T 1qvr_A 773 LRARLAEKRISLELTEAAKDFLAERGYDPVFGARPLRRVIQREL 816 (854)
T ss_dssp HHHHHHTTTCEEEECHHHHHHHHHHHCBTTTBTSTHHHHHHHHT
T ss_pred HHHHHHhCCceEEECHHHHHHHHHcCCCCCCChHHHHHHHHHHH
Confidence 311 01123344566666544 456677777765443
No 75
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.44 E-value=2.7e-12 Score=142.06 Aligned_cols=186 Identities=18% Similarity=0.210 Sum_probs=127.1
Q ss_pred CCCCCCCCcccCcHHHHHHHHHHHHhhcChhHHHhcCCCCCceeEecCCCCCChHHHHHHHHHHcCC-----CEEEeech
Q 035561 448 KNPPIPLKDFASVESMREEINEVVAFLQNPSAFQEMGARAPRGVLIVGERGTGKTSLALAIAAEARV-----PVVNVEAQ 522 (979)
Q Consensus 448 ~~~~~~f~DIvGleevke~L~eiV~~L~~p~~f~~lG~~~P~gVLL~GPPGTGKTtLArAlA~elg~-----~~i~Is~s 522 (979)
++++.+|++++|++++++.|...+.. | +.| ++||+||||||||++|+++|+.+.. .+..++++
T Consensus 18 k~rp~~~~~~~g~~~~~~~L~~~i~~----------g-~~~-~~ll~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~~~ 85 (340)
T 1sxj_C 18 KYRPETLDEVYGQNEVITTVRKFVDE----------G-KLP-HLLFYGPPGTGKTSTIVALAREIYGKNYSNMVLELNAS 85 (340)
T ss_dssp HTCCSSGGGCCSCHHHHHHHHHHHHT----------T-CCC-CEEEECSSSSSHHHHHHHHHHHHHTTSHHHHEEEECTT
T ss_pred HhCCCcHHHhcCcHHHHHHHHHHHhc----------C-CCc-eEEEECCCCCCHHHHHHHHHHHHcCCCccceEEEEcCc
Confidence 56788999999999998888765531 2 233 3999999999999999999998732 36666665
Q ss_pred hhhhhhhcccchhhHHHHHHHHHh------cCCeEEEEcCccccccccccccCCCchhhHHHHHHHHhhhcccccCCeEE
Q 035561 523 ELEAGLWVGQSASNVRELFQTARD------LAPVIIFVEDFDLFAGVRGQFIHTKQQDHESFINQLLVELDGFEKQDGVV 596 (979)
Q Consensus 523 dL~~~~~vG~~~~~Ir~lF~~A~~------~aP~ILfIDEIDaL~~~r~~~~~~~~~~~~~iln~LL~~LDg~~~~~~Vi 596 (979)
+.. +...+++....... ..+.|++|||+|.+.. ...+.|+..++... ..+.
T Consensus 86 ~~~-------~~~~ir~~i~~~~~~~~~~~~~~~viiiDe~~~l~~--------------~~~~~L~~~le~~~--~~~~ 142 (340)
T 1sxj_C 86 DDR-------GIDVVRNQIKDFASTRQIFSKGFKLIILDEADAMTN--------------AAQNALRRVIERYT--KNTR 142 (340)
T ss_dssp SCC-------SHHHHHTHHHHHHHBCCSSSCSCEEEEETTGGGSCH--------------HHHHHHHHHHHHTT--TTEE
T ss_pred ccc-------cHHHHHHHHHHHHhhcccCCCCceEEEEeCCCCCCH--------------HHHHHHHHHHhcCC--CCeE
Confidence 421 12334444433321 2368999999998732 23455666666543 3455
Q ss_pred EEecccchhhchhhhhcCCceeeEeccCCCCHHHHHHHHHHHHHhccchhhhhhhhHHHHHHHcCCCCHHHHHHHHHHHh
Q 035561 597 LMATTRNIKQIDEALQRPGRMDRIFNLQKPTQSEREKILRIAAQETMDEELIDLVDWRKVAEKTALLRPIELKLVPVALE 676 (979)
Q Consensus 597 VIATTN~pe~LDpALlRpgRFd~~I~~~~Pd~eeR~~IL~~~l~~~~~~~l~~dvdL~~LA~~T~GfsgaDL~~Lv~aa~ 676 (979)
+|.+||.+..+.+++++ |+. .+.|++++.++..++++..++... ...++..+..++..+.| |+..+.+.++
T Consensus 143 ~il~~n~~~~i~~~i~s--R~~-~~~~~~l~~~~~~~~l~~~~~~~~--~~i~~~~~~~i~~~s~G----~~r~~~~~l~ 213 (340)
T 1sxj_C 143 FCVLANYAHKLTPALLS--QCT-RFRFQPLPQEAIERRIANVLVHEK--LKLSPNAEKALIELSNG----DMRRVLNVLQ 213 (340)
T ss_dssp EEEEESCGGGSCHHHHT--TSE-EEECCCCCHHHHHHHHHHHHHTTT--CCBCHHHHHHHHHHHTT----CHHHHHHHTT
T ss_pred EEEEecCccccchhHHh--hce-eEeccCCCHHHHHHHHHHHHHHcC--CCCCHHHHHHHHHHcCC----CHHHHHHHHH
Confidence 66778999999999999 764 789999999999999998885432 11234456677777665 5555444443
Q ss_pred h
Q 035561 677 G 677 (979)
Q Consensus 677 ~ 677 (979)
.
T Consensus 214 ~ 214 (340)
T 1sxj_C 214 S 214 (340)
T ss_dssp T
T ss_pred H
Confidence 3
No 76
>3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold, hydro; HET: ADP; 2.91A {Escherichia coli}
Probab=99.41 E-value=3e-13 Score=158.42 Aligned_cols=153 Identities=17% Similarity=0.156 Sum_probs=96.0
Q ss_pred CcccCcHHHHHHHHHHHHhhcChhHHHhcCCCCCceeEecCCCCCChHHHHHHHHHHcC--CCEEEeech-----hhhhh
Q 035561 455 KDFASVESMREEINEVVAFLQNPSAFQEMGARAPRGVLIVGERGTGKTSLALAIAAEAR--VPVVNVEAQ-----ELEAG 527 (979)
Q Consensus 455 ~DIvGleevke~L~eiV~~L~~p~~f~~lG~~~P~gVLL~GPPGTGKTtLArAlA~elg--~~~i~Is~s-----dL~~~ 527 (979)
..++|.+++++.+...+. .+.++||+||||||||++|+++|+.++ .+|..+++. +++ +
T Consensus 22 ~~ivGq~~~i~~l~~al~--------------~~~~VLL~GpPGtGKT~LAraLa~~l~~~~~f~~~~~~~~t~~dL~-G 86 (500)
T 3nbx_X 22 KGLYERSHAIRLCLLAAL--------------SGESVFLLGPPGIAKSLIARRLKFAFQNARAFEYLMTRFSTPEEVF-G 86 (500)
T ss_dssp TTCSSCHHHHHHHHHHHH--------------HTCEEEEECCSSSSHHHHHHHGGGGBSSCCEEEEECCTTCCHHHHH-C
T ss_pred hhhHHHHHHHHHHHHHHh--------------cCCeeEeecCchHHHHHHHHHHHHHHhhhhHHHHHHHhcCCHHHhc-C
Confidence 458899988877653321 124799999999999999999999884 456655553 332 1
Q ss_pred hhcccchhhHHHHHHHHHhc---CCeEEEEcCccccccccccccCCCchhhHHHHHHHHhhhccc--------ccCCeEE
Q 035561 528 LWVGQSASNVRELFQTARDL---APVIIFVEDFDLFAGVRGQFIHTKQQDHESFINQLLVELDGF--------EKQDGVV 596 (979)
Q Consensus 528 ~~vG~~~~~Ir~lF~~A~~~---aP~ILfIDEIDaL~~~r~~~~~~~~~~~~~iln~LL~~LDg~--------~~~~~Vi 596 (979)
.+.+..... ...|..+... .++|||||||+.+. ..+.+.|+..|+.- ...+..+
T Consensus 87 ~~~~~~~~~-~g~~~~~~~g~l~~~~IL~IDEI~r~~--------------~~~q~~LL~~lee~~v~i~G~~~~~~~~~ 151 (500)
T 3nbx_X 87 PLSIQALKD-EGRYERLTSGYLPEAEIVFLDEIWKAG--------------PAILNTLLTAINERQFRNGAHVEKIPMRL 151 (500)
T ss_dssp CBC-----------CBCCTTSGGGCSEEEEESGGGCC--------------HHHHHHHHHHHHSSEEECSSSEEECCCCE
T ss_pred cccHHHHhh-chhHHhhhccCCCcceeeeHHhHhhhc--------------HHHHHHHHHHHHHHhccCCCCcCCcchhh
Confidence 111111111 2233322221 47899999998652 34456666666531 1112235
Q ss_pred EEecccch-h--hchhhhhcCCceeeEeccCCCCH-HHHHHHHHHHH
Q 035561 597 LMATTRNI-K--QIDEALQRPGRMDRIFNLQKPTQ-SEREKILRIAA 639 (979)
Q Consensus 597 VIATTN~p-e--~LDpALlRpgRFd~~I~~~~Pd~-eeR~~IL~~~l 639 (979)
+|+|||.+ + ...+++++ ||...+.+++|+. +++..|++.+.
T Consensus 152 iI~ATN~lpe~~~~~~aLld--RF~~~i~v~~p~~~ee~~~IL~~~~ 196 (500)
T 3nbx_X 152 LVAASNELPEADSSLEALYD--RMLIRLWLDKVQDKANFRSMLTSQQ 196 (500)
T ss_dssp EEEEESSCCCTTCTTHHHHT--TCCEEEECCSCCCHHHHHHHHTCCC
T ss_pred hhhccccCCCccccHHHHHH--HHHHHHHHHHhhhhhhHHHHHhccc
Confidence 67777763 2 24469999 9999999999987 77889998654
No 77
>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}
Probab=99.39 E-value=1e-12 Score=144.34 Aligned_cols=157 Identities=18% Similarity=0.247 Sum_probs=100.3
Q ss_pred CcccCcHHHHHHHHHHHHhhcChhHHHhcCCCCCceeEecCCCCCChHHHHHHHHHHc---CCCEEEeechhhhhhh---
Q 035561 455 KDFASVESMREEINEVVAFLQNPSAFQEMGARAPRGVLIVGERGTGKTSLALAIAAEA---RVPVVNVEAQELEAGL--- 528 (979)
Q Consensus 455 ~DIvGleevke~L~eiV~~L~~p~~f~~lG~~~P~gVLL~GPPGTGKTtLArAlA~el---g~~~i~Is~sdL~~~~--- 528 (979)
++++|.....+.+.+.+.... ..+.+|||+||||||||++|++++... +.||+.++|+.+..+.
T Consensus 2 ~~iig~s~~~~~~~~~~~~~a----------~~~~~vLi~Ge~GtGKt~lAr~i~~~~~~~~~~~v~v~~~~~~~~l~~~ 71 (304)
T 1ojl_A 2 SHMIGSSPAMQHLLNEIAMVA----------PSDATVLIHGDSGTGKELVARALHACSARSDRPLVTLNCAALNESLLES 71 (304)
T ss_dssp -CCCCCSHHHHHHHHHHHHHC----------STTSCEEEESCTTSCHHHHHHHHHHHSSCSSSCCCEEECSSCCHHHHHH
T ss_pred CCcEECCHHHHHHHHHHHHHh----------CCCCcEEEECCCCchHHHHHHHHHHhCcccCCCeEEEeCCCCChHHHHH
Confidence 468899888888776665432 345679999999999999999999976 6799999998764211
Q ss_pred ---------hcccchhhHHHHHHHHHhcCCeEEEEcCccccccccccccCCCchhhHHHHHHHHhhhcccc---------
Q 035561 529 ---------WVGQSASNVRELFQTARDLAPVIIFVEDFDLFAGVRGQFIHTKQQDHESFINQLLVELDGFE--------- 590 (979)
Q Consensus 529 ---------~vG~~~~~Ir~lF~~A~~~aP~ILfIDEIDaL~~~r~~~~~~~~~~~~~iln~LL~~LDg~~--------- 590 (979)
|.|... .....|..|. +++|||||||.+.. .....|+..|+...
T Consensus 72 ~lfg~~~g~~tg~~~-~~~g~~~~a~---~g~L~LDEi~~l~~--------------~~q~~Ll~~l~~~~~~~~g~~~~ 133 (304)
T 1ojl_A 72 ELFGHEKGAFTGADK-RREGRFVEAD---GGTLFLDEIGDISP--------------LMQVRLLRAIQEREVQRVGSNQT 133 (304)
T ss_dssp HHTCCCSSCCC---C-CCCCHHHHHT---TSEEEEESCTTCCH--------------HHHHHHHHHHHSSBCCBTTBCCC
T ss_pred HhcCccccccCchhh-hhcCHHHhcC---CCEEEEeccccCCH--------------HHHHHHHHHHhcCEeeecCCccc
Confidence 111111 1234455554 48999999998832 23345555555321
Q ss_pred cCCeEEEEecccch-h------hchhhhhcCCcee-eEeccCCCC--HHHHHHHHHHHHHh
Q 035561 591 KQDGVVLMATTRNI-K------QIDEALQRPGRMD-RIFNLQKPT--QSEREKILRIAAQE 641 (979)
Q Consensus 591 ~~~~ViVIATTN~p-e------~LDpALlRpgRFd-~~I~~~~Pd--~eeR~~IL~~~l~~ 641 (979)
....+.||+|||.+ + .+++.|.. ||. ..|.+|++. .++...+++.+++.
T Consensus 134 ~~~~~riI~atn~~l~~~v~~g~fr~~L~~--Rl~~~~i~lPpL~eR~edi~~l~~~~l~~ 192 (304)
T 1ojl_A 134 ISVDVRLIAATHRDLAEEVSAGRFRQDLYY--RLNVVAIEMPSLRQRREDIPLLADHFLRR 192 (304)
T ss_dssp CBCCCEEEEEESSCHHHHHHHTSSCHHHHH--HHSSEEEECCCSGGGGGGHHHHHHHHHHH
T ss_pred ccCCeEEEEecCccHHHHHHhCCcHHHHHh--hcCeeEEeccCHHHhHhhHHHHHHHHHHH
Confidence 12347888888874 2 24556666 664 335555555 35556677766654
No 78
>3f9v_A Minichromosome maintenance protein MCM; replicative helicase, DNA replication, MCM complex, AAA+ Pro ATP-binding, DNA-binding, helicase; 4.35A {Sulfolobus solfataricus}
Probab=99.37 E-value=8.3e-14 Score=166.39 Aligned_cols=166 Identities=14% Similarity=0.147 Sum_probs=102.5
Q ss_pred CcccCcHHHHHHHHHHHHhhcChhHHHhcCCCCCceeEecCCCCCChHHHHHHHHHHcCCCEEEe----echhhhhhh--
Q 035561 455 KDFASVESMREEINEVVAFLQNPSAFQEMGARAPRGVLIVGERGTGKTSLALAIAAEARVPVVNV----EAQELEAGL-- 528 (979)
Q Consensus 455 ~DIvGleevke~L~eiV~~L~~p~~f~~lG~~~P~gVLL~GPPGTGKTtLArAlA~elg~~~i~I----s~sdL~~~~-- 528 (979)
..|+|++++|+.+...+.- ..+........+...++||+||||||||++|+++|+.++..++.. ++.++....
T Consensus 295 ~~I~G~e~vk~al~~~l~~-g~~~~~~~~~~r~~~~vLL~GppGtGKT~LAr~la~~~~r~~~~~~~~~~~~~l~~~~~~ 373 (595)
T 3f9v_A 295 PSIYGHWELKEALALALFG-GVPKVLEDTRIRGDIHILIIGDPGTAKSQMLQFISRVAPRAVYTTGKGSTAAGLTAAVVR 373 (595)
T ss_dssp STTSCCHHHHHHHTTTTTC-CCCEETTTTEECCSCCEEEEESSCCTHHHHHHSSSTTCSCEECCCTTCSTTTTSEEECSS
T ss_pred chhcChHHHHHHHHHHHhC-CCcccccCCCcCCCcceEEECCCchHHHHHHHHHHHhCCCceecCCCccccccccceeee
Confidence 5689999988777421110 000000001123344899999999999999999999998765542 233332111
Q ss_pred --hcccchhhHHHHHHHHHhcCCeEEEEcCccccccccccccCCCchhhHHHHHHHHhhhccc-----------ccCCeE
Q 035561 529 --WVGQSASNVRELFQTARDLAPVIIFVEDFDLFAGVRGQFIHTKQQDHESFINQLLVELDGF-----------EKQDGV 595 (979)
Q Consensus 529 --~vG~~~~~Ir~lF~~A~~~aP~ILfIDEIDaL~~~r~~~~~~~~~~~~~iln~LL~~LDg~-----------~~~~~V 595 (979)
+.|.... -...+..| .++|+||||||.+.+ ...+.|+..|+.- ..+.++
T Consensus 374 ~~~~g~~~~-~~G~l~~A---~~gil~IDEid~l~~--------------~~q~~Ll~~le~~~i~i~~~g~~~~~~~~~ 435 (595)
T 3f9v_A 374 EKGTGEYYL-EAGALVLA---DGGIAVIDEIDKMRD--------------EDRVAIHEAMEQQTVSIAKAGIVAKLNARA 435 (595)
T ss_dssp GGGTSSCSE-EECHHHHH---SSSEECCTTTTCCCS--------------HHHHHHHHHHHSSSEEEESSSSEEEECCCC
T ss_pred ccccccccc-cCCeeEec---CCCcEEeehhhhCCH--------------hHhhhhHHHHhCCEEEEecCCcEEEecCce
Confidence 0110000 01123333 358999999998732 2334555555531 112457
Q ss_pred EEEecccchh-------------hchhhhhcCCceee-EeccCCCCHHHHHHHHHHHHHhc
Q 035561 596 VLMATTRNIK-------------QIDEALQRPGRMDR-IFNLQKPTQSEREKILRIAAQET 642 (979)
Q Consensus 596 iVIATTN~pe-------------~LDpALlRpgRFd~-~I~~~~Pd~eeR~~IL~~~l~~~ 642 (979)
.||||||.+. .|+++|++ |||. .+..+.|+.+ ...|.++.+...
T Consensus 436 ~vIaatNp~~G~~~~~~~~~~ni~l~~aLl~--RFDl~~~~~~~~~~e-~~~i~~~il~~~ 493 (595)
T 3f9v_A 436 AVIAAGNPKFGRYISERPVSDNINLPPTILS--RFDLIFILKDQPGEQ-DRELANYILDVH 493 (595)
T ss_dssp EEEEEECCTTCCSCTTSCSCTTTCSCSSSGG--GCSCCEEECCTTHHH-HHHHHHHHHTTT
T ss_pred EEEEEcCCcCCccCcccCchhccCCCHHHHh--hCeEEEEeCCCCCHH-HHHHHHHHHHHh
Confidence 8999999986 89999999 9984 5666777777 888888777643
No 79
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=99.34 E-value=7.4e-13 Score=129.26 Aligned_cols=132 Identities=17% Similarity=0.191 Sum_probs=88.2
Q ss_pred cccCcHHHHHHHHHHHHhhcChhHHHhcCCCCCceeEecCCCCCChHHHHHHHHHHcCCCEEEeechhhhhhhhcccchh
Q 035561 456 DFASVESMREEINEVVAFLQNPSAFQEMGARAPRGVLIVGERGTGKTSLALAIAAEARVPVVNVEAQELEAGLWVGQSAS 535 (979)
Q Consensus 456 DIvGleevke~L~eiV~~L~~p~~f~~lG~~~P~gVLL~GPPGTGKTtLArAlA~elg~~~i~Is~sdL~~~~~vG~~~~ 535 (979)
+++|.++..+.+.+.+.... ..+.+|||+||||||||++|++++...+ +++.++|+++.. .+
T Consensus 5 ~~iG~s~~~~~l~~~~~~~~----------~~~~~vll~G~~GtGKt~lA~~i~~~~~-~~~~~~~~~~~~-~~------ 66 (143)
T 3co5_A 5 DKLGNSAAIQEMNREVEAAA----------KRTSPVFLTGEAGSPFETVARYFHKNGT-PWVSPARVEYLI-DM------ 66 (143)
T ss_dssp ---CCCHHHHHHHHHHHHHH----------TCSSCEEEEEETTCCHHHHHGGGCCTTS-CEECCSSTTHHH-HC------
T ss_pred CceeCCHHHHHHHHHHHHHh----------CCCCcEEEECCCCccHHHHHHHHHHhCC-CeEEechhhCCh-Hh------
Confidence 57899888888877665431 2346799999999999999999999988 999999998752 21
Q ss_pred hHHHHHHHHHhcCCeEEEEcCccccccccccccCCCchhhHHHHHHHHhhhcccccCCeEEEEecccch-hh----chhh
Q 035561 536 NVRELFQTARDLAPVIIFVEDFDLFAGVRGQFIHTKQQDHESFINQLLVELDGFEKQDGVVLMATTRNI-KQ----IDEA 610 (979)
Q Consensus 536 ~Ir~lF~~A~~~aP~ILfIDEIDaL~~~r~~~~~~~~~~~~~iln~LL~~LDg~~~~~~ViVIATTN~p-e~----LDpA 610 (979)
....|+.+. +++|||||+|.+.. .....|+..++.-. ..++.+|+|||.+ +. +++.
T Consensus 67 -~~~~~~~a~---~~~l~lDei~~l~~--------------~~q~~Ll~~l~~~~-~~~~~iI~~tn~~~~~~~~~~~~~ 127 (143)
T 3co5_A 67 -PMELLQKAE---GGVLYVGDIAQYSR--------------NIQTGITFIIGKAE-RCRVRVIASCSYAAGSDGISCEEK 127 (143)
T ss_dssp -HHHHHHHTT---TSEEEEEECTTCCH--------------HHHHHHHHHHHHHT-TTTCEEEEEEEECTTTC--CHHHH
T ss_pred -hhhHHHhCC---CCeEEEeChHHCCH--------------HHHHHHHHHHHhCC-CCCEEEEEecCCCHHHHHhCccHH
Confidence 456677664 58999999998832 12233444444322 3446778888763 33 4455
Q ss_pred hhcCCcee-eEeccCCC
Q 035561 611 LQRPGRMD-RIFNLQKP 626 (979)
Q Consensus 611 LlRpgRFd-~~I~~~~P 626 (979)
|.. ||. ..|.+|+.
T Consensus 128 L~~--rl~~~~i~lPpL 142 (143)
T 3co5_A 128 LAG--LFSESVVRIPPL 142 (143)
T ss_dssp HHH--HSSSEEEEECCC
T ss_pred HHH--HhcCcEEeCCCC
Confidence 555 533 35666653
No 80
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=99.32 E-value=7.4e-13 Score=172.02 Aligned_cols=155 Identities=17% Similarity=0.177 Sum_probs=109.5
Q ss_pred CCCCCCCcccCcHHHHHHHHHHHHh-hcC----------hhHHHh------cCCC----------CCce--eEecCCCCC
Q 035561 449 NPPIPLKDFASVESMREEINEVVAF-LQN----------PSAFQE------MGAR----------APRG--VLIVGERGT 499 (979)
Q Consensus 449 ~~~~~f~DIvGleevke~L~eiV~~-L~~----------p~~f~~------lG~~----------~P~g--VLL~GPPGT 499 (979)
.+.++|+|+.|++++|+.+.+.+.+ +.. ++.|+. .|.. +|+| +|+||||||
T Consensus 1014 ~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tG~~glD~~lg~GG~p~g~~~l~~G~~g~ 1093 (1706)
T 3cmw_A 1014 ASGSSTGSMSAIDENKQKALAAALGQIEKQFGKGSIMRLGEDRSMDVETISTGSLSLDIALGAGGLPMGRIVEIYGPESS 1093 (1706)
T ss_dssp ----------CTTHHHHHHHHHHHHHHHHHHCGGGSEEGGGCGGGSCCEECCSCHHHHHHTSSSSEETTSEEEEECSTTS
T ss_pred cCCceeeecCCccHHHHHHHHHHHHHHhhccCcccchhchhhhhccccccccCchhHHHHhccCCCCCCCEEEEEcCCCC
Confidence 4558999999999999999888777 522 445554 2332 4555 999999999
Q ss_pred ChHHHHHHHHHHc---CCCEEEeechhhh----h-------hhhccc----chhhHHHHHHHHHhcCCeEEEEcCccccc
Q 035561 500 GKTSLALAIAAEA---RVPVVNVEAQELE----A-------GLWVGQ----SASNVRELFQTARDLAPVIIFVEDFDLFA 561 (979)
Q Consensus 500 GKTtLArAlA~el---g~~~i~Is~sdL~----~-------~~~vG~----~~~~Ir~lF~~A~~~aP~ILfIDEIDaL~ 561 (979)
|||++|+++|.+. |.|.+.|+..+.. . +.++++ ++..++.+|..|+..+||++|+|++|+|+
T Consensus 1094 GKT~la~~~~~~~~~~g~~~~fi~~~~~~~~~~~~~~G~d~~~~~~~~~~~~e~~l~~~~~~ar~~~~~~i~~d~~~al~ 1173 (1706)
T 3cmw_A 1094 GKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTGEQALEICDALARSGAVDVIVVDSVAALT 1173 (1706)
T ss_dssp SHHHHHHHHHHHHHHTTCCEEEECTTSCCCHHHHHHTTCCGGGCEEECCSSHHHHHHHHHHHHHHTCCSEEEESCGGGCC
T ss_pred ChHHHHHHHHHHhhhcCCceeEEEcccchHHHHHHHhCCCHHHHhhccccchHHHHHHHHHHHHhcCCeEEEeCchHhcC
Confidence 9999999999877 5666666665432 1 335566 88999999999999999999999999999
Q ss_pred cccc---cccCCCchhhHHHHHHHHhhhcccccCCeEEEEecccch
Q 035561 562 GVRG---QFIHTKQQDHESFINQLLVELDGFEKQDGVVLMATTRNI 604 (979)
Q Consensus 562 ~~r~---~~~~~~~~~~~~iln~LL~~LDg~~~~~~ViVIATTN~p 604 (979)
+.+. ...........+.++++|.+|++.....+|+|| +||+.
T Consensus 1174 ~~~~~~g~~~~~~~~~~~r~~~q~l~~~~~~~~~~~v~v~-~~n~~ 1218 (1706)
T 3cmw_A 1174 PKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKQSNTLLI-FINQI 1218 (1706)
T ss_dssp CHHHHHSCTTCCCTTHHHHHHHHHHHHHHHHHHHTTCEEE-EEECE
T ss_pred cccccccccccccccHHHHHHHHHHHHHHhhhccCCeEEE-Eeccc
Confidence 9853 211112244567899999999998777778887 67773
No 81
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=99.31 E-value=3.8e-12 Score=124.38 Aligned_cols=111 Identities=10% Similarity=0.098 Sum_probs=77.6
Q ss_pred cccCcHHHHHHHHHHHHhhcChhHHHhcCCCCCceeEecCCCCCChHHHHHHHHHHc---CCCEEEeechhhhhhhhccc
Q 035561 456 DFASVESMREEINEVVAFLQNPSAFQEMGARAPRGVLIVGERGTGKTSLALAIAAEA---RVPVVNVEAQELEAGLWVGQ 532 (979)
Q Consensus 456 DIvGleevke~L~eiV~~L~~p~~f~~lG~~~P~gVLL~GPPGTGKTtLArAlA~el---g~~~i~Is~sdL~~~~~vG~ 532 (979)
+++|..+..+.+.+.+..+ ...+.+|||+||||||||++|++++... +.||+ ++|+.+...
T Consensus 2 ~iiG~s~~~~~~~~~~~~~----------a~~~~~vll~G~~GtGKt~lA~~i~~~~~~~~~~~v-~~~~~~~~~----- 65 (145)
T 3n70_A 2 ELIGRSEWINQYRRRLQQL----------SETDIAVWLYGAPGTGRMTGARYLHQFGRNAQGEFV-YRELTPDNA----- 65 (145)
T ss_dssp --CCSSHHHHHHHHHHHHH----------TTCCSCEEEESSTTSSHHHHHHHHHHSSTTTTSCCE-EEECCTTTS-----
T ss_pred CceeCCHHHHHHHHHHHHH----------hCCCCCEEEECCCCCCHHHHHHHHHHhCCccCCCEE-EECCCCCcc-----
Confidence 5788888877777665443 2344679999999999999999999987 78999 999887522
Q ss_pred chhhHHHHHHHHHhcCCeEEEEcCccccccccccccCCCchhhHHHHHHHHhhhcccccCCeEEEEecccc
Q 035561 533 SASNVRELFQTARDLAPVIIFVEDFDLFAGVRGQFIHTKQQDHESFINQLLVELDGFEKQDGVVLMATTRN 603 (979)
Q Consensus 533 ~~~~Ir~lF~~A~~~aP~ILfIDEIDaL~~~r~~~~~~~~~~~~~iln~LL~~LDg~~~~~~ViVIATTN~ 603 (979)
......|..+. +++|||||+|.+.. .....|+..|.. ....+.+|+|||.
T Consensus 66 --~~~~~~~~~a~---~g~l~ldei~~l~~--------------~~q~~Ll~~l~~--~~~~~~~I~~t~~ 115 (145)
T 3n70_A 66 --PQLNDFIALAQ---GGTLVLSHPEHLTR--------------EQQYHLVQLQSQ--EHRPFRLIGIGDT 115 (145)
T ss_dssp --SCHHHHHHHHT---TSCEEEECGGGSCH--------------HHHHHHHHHHHS--SSCSSCEEEEESS
T ss_pred --hhhhcHHHHcC---CcEEEEcChHHCCH--------------HHHHHHHHHHhh--cCCCEEEEEECCc
Confidence 34556677764 48999999998832 122345555533 2234567777776
No 82
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*
Probab=99.29 E-value=6.7e-11 Score=132.46 Aligned_cols=207 Identities=13% Similarity=0.145 Sum_probs=130.3
Q ss_pred CCCCCcccCcHHHHHHHHHHH-HhhcChhHHHhcCC-CCCceeEe--cCCCCCChHHHHHHHHHHc---------CCCEE
Q 035561 451 PIPLKDFASVESMREEINEVV-AFLQNPSAFQEMGA-RAPRGVLI--VGERGTGKTSLALAIAAEA---------RVPVV 517 (979)
Q Consensus 451 ~~~f~DIvGleevke~L~eiV-~~L~~p~~f~~lG~-~~P~gVLL--~GPPGTGKTtLArAlA~el---------g~~~i 517 (979)
....++++|.++..+.|.+.+ ..... +. ..+..++| +||||||||++++++++.+ +.+++
T Consensus 18 ~~~p~~l~gR~~el~~l~~~l~~~~~~-------~~~~~~~~~li~i~G~~G~GKT~L~~~~~~~~~~~~~~~~~~~~~~ 90 (412)
T 1w5s_A 18 NYIPPELRVRRGEAEALARIYLNRLLS-------GAGLSDVNMIYGSIGRVGIGKTTLAKFTVKRVSEAAAKEGLTVKQA 90 (412)
T ss_dssp TCCCSSCSSSCHHHHHHHHHHHHHHHT-------SSCBCCEEEEEECTTCCSSSHHHHHHHHHHHHHHHHHHTTCCEEEE
T ss_pred ccCCCCCCChHHHHHHHHHHHhHHHhc-------CCCCCCCEEEEeCcCcCCCCHHHHHHHHHHHHHHHHhccCCceeEE
Confidence 344588999998888887766 43211 10 24568999 9999999999999999876 56788
Q ss_pred Eeechhhhh-----hh---hc-------ccchhh-HHHHHHHHH-hcCCeEEEEcCccccccccccccCCCchhhHHHHH
Q 035561 518 NVEAQELEA-----GL---WV-------GQSASN-VRELFQTAR-DLAPVIIFVEDFDLFAGVRGQFIHTKQQDHESFIN 580 (979)
Q Consensus 518 ~Is~sdL~~-----~~---~v-------G~~~~~-Ir~lF~~A~-~~aP~ILfIDEIDaL~~~r~~~~~~~~~~~~~iln 580 (979)
+++|..... .. .. +..... ...+..... ...|+||+|||+|.+...+. .....+.
T Consensus 91 ~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~llvlDe~~~l~~~~~--------~~~~~l~ 162 (412)
T 1w5s_A 91 YVNAFNAPNLYTILSLIVRQTGYPIQVRGAPALDILKALVDNLYVENHYLLVILDEFQSMLSSPR--------IAAEDLY 162 (412)
T ss_dssp EEEGGGCCSHHHHHHHHHHHHTCCCCCTTCCHHHHHHHHHHHHHHHTCEEEEEEESTHHHHSCTT--------SCHHHHH
T ss_pred EEECCCCCCHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHHhcCCeEEEEEeCHHHHhhccC--------cchHHHH
Confidence 888743210 00 00 111111 222222222 24589999999998843210 1123455
Q ss_pred HHHhhhccccc-C--CeEEEEecccchh---hch---hhhhcCCceeeEeccCCCCHHHHHHHHHHHHHhccchhhhhhh
Q 035561 581 QLLVELDGFEK-Q--DGVVLMATTRNIK---QID---EALQRPGRMDRIFNLQKPTQSEREKILRIAAQETMDEELIDLV 651 (979)
Q Consensus 581 ~LL~~LDg~~~-~--~~ViVIATTN~pe---~LD---pALlRpgRFd~~I~~~~Pd~eeR~~IL~~~l~~~~~~~l~~dv 651 (979)
.++..++.... . .++.+|++||.++ .++ +.+.+ +|...+.+++++.++..++++..+.........++.
T Consensus 163 ~l~~~~~~~~~~~~~~~v~lI~~~~~~~~~~~l~~~~~~~~~--~~~~~i~l~~l~~~e~~~ll~~~~~~~~~~~~~~~~ 240 (412)
T 1w5s_A 163 TLLRVHEEIPSRDGVNRIGFLLVASDVRALSYMREKIPQVES--QIGFKLHLPAYKSRELYTILEQRAELGLRDTVWEPR 240 (412)
T ss_dssp HHHTHHHHSCCTTSCCBEEEEEEEEETHHHHHHHHHCHHHHT--TCSEEEECCCCCHHHHHHHHHHHHHHHBCTTSCCHH
T ss_pred HHHHHHHhcccCCCCceEEEEEEeccccHHHHHhhhcchhhh--hcCCeeeeCCCCHHHHHHHHHHHHHhcCCCCCCChH
Confidence 55555544321 2 5688888887765 455 77777 666669999999999999999887643221223344
Q ss_pred hHHHHHHHcC------CCCHHHHHHHHHHH
Q 035561 652 DWRKVAEKTA------LLRPIELKLVPVAL 675 (979)
Q Consensus 652 dL~~LA~~T~------GfsgaDL~~Lv~aa 675 (979)
.+..+++.+. | .+..+..+++.+
T Consensus 241 ~~~~i~~~~~~~~~~~G-~p~~~~~l~~~a 269 (412)
T 1w5s_A 241 HLELISDVYGEDKGGDG-SARRAIVALKMA 269 (412)
T ss_dssp HHHHHHHHHCGGGTSCC-CHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccCCC-cHHHHHHHHHHH
Confidence 5777888888 7 455555665443
No 83
>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*
Probab=99.29 E-value=5.3e-11 Score=131.98 Aligned_cols=147 Identities=18% Similarity=0.200 Sum_probs=105.5
Q ss_pred CCCceeEecCCCCCChHHHHHHHHHHcCCC------------------------EEEeechhhhhhhhcccchhhHHHHH
Q 035561 486 RAPRGVLIVGERGTGKTSLALAIAAEARVP------------------------VVNVEAQELEAGLWVGQSASNVRELF 541 (979)
Q Consensus 486 ~~P~gVLL~GPPGTGKTtLArAlA~elg~~------------------------~i~Is~sdL~~~~~vG~~~~~Ir~lF 541 (979)
+.|.++||+||||||||++|+++|+.+..+ ++.+++.+- -...+...+|++.
T Consensus 22 ~~~~a~L~~G~~G~GKt~~a~~la~~l~~~~~~~~~~c~~c~~c~~~~~~~~~d~~~~~~~~~----~~~~~i~~ir~l~ 97 (334)
T 1a5t_A 22 RGHHALLIQALPGMGDDALIYALSRYLLCQQPQGHKSCGHCRGCQLMQAGTHPDYYTLAPEKG----KNTLGVDAVREVT 97 (334)
T ss_dssp CCCSEEEEECCTTSCHHHHHHHHHHHHTCSSCBTTBCCSCSHHHHHHHHTCCTTEEEECCCTT----CSSBCHHHHHHHH
T ss_pred CcceeEEEECCCCchHHHHHHHHHHHHhCCCCCCCCCCCCCHHHHHHhcCCCCCEEEEecccc----CCCCCHHHHHHHH
Confidence 456789999999999999999999988643 222222100 0122345678888
Q ss_pred HHHHhc----CCeEEEEcCccccccccccccCCCchhhHHHHHHHHhhhcccccCCeEEEEecccchhhchhhhhcCCce
Q 035561 542 QTARDL----APVIIFVEDFDLFAGVRGQFIHTKQQDHESFINQLLVELDGFEKQDGVVLMATTRNIKQIDEALQRPGRM 617 (979)
Q Consensus 542 ~~A~~~----aP~ILfIDEIDaL~~~r~~~~~~~~~~~~~iln~LL~~LDg~~~~~~ViVIATTN~pe~LDpALlRpgRF 617 (979)
+.+... .+.|++|||+|.+. ....|.|++.|+. ...++++|.+||.++.++|++++ |+
T Consensus 98 ~~~~~~~~~~~~kvviIdead~l~--------------~~a~naLLk~lEe--p~~~~~~Il~t~~~~~l~~ti~S--Rc 159 (334)
T 1a5t_A 98 EKLNEHARLGGAKVVWVTDAALLT--------------DAAANALLKTLEE--PPAETWFFLATREPERLLATLRS--RC 159 (334)
T ss_dssp HHTTSCCTTSSCEEEEESCGGGBC--------------HHHHHHHHHHHTS--CCTTEEEEEEESCGGGSCHHHHT--TS
T ss_pred HHHhhccccCCcEEEEECchhhcC--------------HHHHHHHHHHhcC--CCCCeEEEEEeCChHhCcHHHhh--cc
Confidence 877532 36899999999883 2346778888875 33457777788889999999999 65
Q ss_pred eeEeccCCCCHHHHHHHHHHHHHhccchhhhhhhhHHHHHHHcCC
Q 035561 618 DRIFNLQKPTQSEREKILRIAAQETMDEELIDLVDWRKVAEKTAL 662 (979)
Q Consensus 618 d~~I~~~~Pd~eeR~~IL~~~l~~~~~~~l~~dvdL~~LA~~T~G 662 (979)
..+.|++|+.++..++++... ..++..+..+++.+.|
T Consensus 160 -~~~~~~~~~~~~~~~~L~~~~-------~~~~~~~~~l~~~s~G 196 (334)
T 1a5t_A 160 -RLHYLAPPPEQYAVTWLSREV-------TMSQDALLAALRLSAG 196 (334)
T ss_dssp -EEEECCCCCHHHHHHHHHHHC-------CCCHHHHHHHHHHTTT
T ss_pred -eeeeCCCCCHHHHHHHHHHhc-------CCCHHHHHHHHHHcCC
Confidence 579999999999999988764 1123345667777766
No 84
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=99.16 E-value=8.8e-11 Score=140.44 Aligned_cols=53 Identities=30% Similarity=0.401 Sum_probs=43.8
Q ss_pred cCCCCCCCCcccCcHHHHHHHHHHHHhhcChhHHHhcCCCCCceeEecCCCCCChHHHHHHHHHHcC
Q 035561 447 VKNPPIPLKDFASVESMREEINEVVAFLQNPSAFQEMGARAPRGVLIVGERGTGKTSLALAIAAEAR 513 (979)
Q Consensus 447 v~~~~~~f~DIvGleevke~L~eiV~~L~~p~~f~~lG~~~P~gVLL~GPPGTGKTtLArAlA~elg 513 (979)
.+.++..|++++|.+.+++.+...+. ...+++|+||||||||++|+++|+.+.
T Consensus 33 ~~~rp~~l~~i~G~~~~l~~l~~~i~--------------~g~~vll~Gp~GtGKTtlar~ia~~l~ 85 (604)
T 3k1j_A 33 IEVPEKLIDQVIGQEHAVEVIKTAAN--------------QKRHVLLIGEPGTGKSMLGQAMAELLP 85 (604)
T ss_dssp SCCCSSHHHHCCSCHHHHHHHHHHHH--------------TTCCEEEECCTTSSHHHHHHHHHHTSC
T ss_pred ccccccccceEECchhhHhhcccccc--------------CCCEEEEEeCCCCCHHHHHHHHhccCC
Confidence 46677889999999998887765442 124799999999999999999999875
No 85
>2gno_A DNA polymerase III, gamma subunit-related protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: DNA; 2.00A {Thermotoga maritima} SCOP: a.80.1.1 c.37.1.20
Probab=99.16 E-value=1.2e-10 Score=128.22 Aligned_cols=142 Identities=13% Similarity=0.202 Sum_probs=102.9
Q ss_pred CcHHHHHHHHHHHHhhcChhHHHhcCCCCCceeEecCCCCCChHHHHHHHHHHc------CCCEEEeechhhhhhhhccc
Q 035561 459 SVESMREEINEVVAFLQNPSAFQEMGARAPRGVLIVGERGTGKTSLALAIAAEA------RVPVVNVEAQELEAGLWVGQ 532 (979)
Q Consensus 459 Gleevke~L~eiV~~L~~p~~f~~lG~~~P~gVLL~GPPGTGKTtLArAlA~el------g~~~i~Is~sdL~~~~~vG~ 532 (979)
|++++.+.|+..+.. | + +.++|||||||||||++|+++|+.+ ...++.+++++- ..
T Consensus 1 g~~~~~~~L~~~i~~----------~-~-~~~~Lf~Gp~G~GKtt~a~~la~~~~~~~~~~~d~~~l~~~~~------~~ 62 (305)
T 2gno_A 1 GAKDQLETLKRIIEK----------S-E-GISILINGEDLSYPREVSLELPEYVEKFPPKASDVLEIDPEGE------NI 62 (305)
T ss_dssp ---CHHHHHHHHHHT----------C-S-SEEEEEECSSSSHHHHHHHHHHHHHHTSCCCTTTEEEECCSSS------CB
T ss_pred ChHHHHHHHHHHHHC----------C-C-CcEEEEECCCCCCHHHHHHHHHHhCchhhccCCCEEEEcCCcC------CC
Confidence 566666666654421 1 2 3479999999999999999999874 346666665420 23
Q ss_pred chhhHHHHHHHHHhcC----CeEEEEcCccccccccccccCCCchhhHHHHHHHHhhhcccccCCeEEEEecccchhhch
Q 035561 533 SASNVRELFQTARDLA----PVIIFVEDFDLFAGVRGQFIHTKQQDHESFINQLLVELDGFEKQDGVVLMATTRNIKQID 608 (979)
Q Consensus 533 ~~~~Ir~lF~~A~~~a----P~ILfIDEIDaL~~~r~~~~~~~~~~~~~iln~LL~~LDg~~~~~~ViVIATTN~pe~LD 608 (979)
+...+|++.+.+.... ..|++|||+|.+. ....|.|++.|+.. .+.+++|.+||.++.|.
T Consensus 63 ~id~ir~li~~~~~~p~~~~~kvviIdead~lt--------------~~a~naLLk~LEep--~~~t~fIl~t~~~~kl~ 126 (305)
T 2gno_A 63 GIDDIRTIKDFLNYSPELYTRKYVIVHDCERMT--------------QQAANAFLKALEEP--PEYAVIVLNTRRWHYLL 126 (305)
T ss_dssp CHHHHHHHHHHHTSCCSSSSSEEEEETTGGGBC--------------HHHHHHTHHHHHSC--CTTEEEEEEESCGGGSC
T ss_pred CHHHHHHHHHHHhhccccCCceEEEeccHHHhC--------------HHHHHHHHHHHhCC--CCCeEEEEEECChHhCh
Confidence 4456888888886432 4799999999883 23467788888753 34566666678889999
Q ss_pred hhhhcCCceeeEeccCCCCHHHHHHHHHHHH
Q 035561 609 EALQRPGRMDRIFNLQKPTQSEREKILRIAA 639 (979)
Q Consensus 609 pALlRpgRFd~~I~~~~Pd~eeR~~IL~~~l 639 (979)
|++++ | .++|++|+.++..++++..+
T Consensus 127 ~tI~S--R---~~~f~~l~~~~i~~~L~~~~ 152 (305)
T 2gno_A 127 PTIKS--R---VFRVVVNVPKEFRDLVKEKI 152 (305)
T ss_dssp HHHHT--T---SEEEECCCCHHHHHHHHHHH
T ss_pred HHHHc--e---eEeCCCCCHHHHHHHHHHHh
Confidence 99999 7 88999999999999998776
No 86
>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A
Probab=99.16 E-value=2.8e-10 Score=153.73 Aligned_cols=139 Identities=19% Similarity=0.317 Sum_probs=98.6
Q ss_pred CceeEecCCCCCChHHHHHHH-HHHcCCCEEEeechhhhhhhhcccchhhHHHHHHHHH---------------hcCCeE
Q 035561 488 PRGVLIVGERGTGKTSLALAI-AAEARVPVVNVEAQELEAGLWVGQSASNVRELFQTAR---------------DLAPVI 551 (979)
Q Consensus 488 P~gVLL~GPPGTGKTtLArAl-A~elg~~~i~Is~sdL~~~~~vG~~~~~Ir~lF~~A~---------------~~aP~I 551 (979)
++++||+||||||||++|+.+ +...+.+++.++++...+ ...+...++... ...++|
T Consensus 1267 ~~~vLL~GPpGtGKT~la~~~l~~~~~~~~~~infsa~ts-------~~~~~~~i~~~~~~~~~~~g~~~~P~~~gk~~V 1339 (2695)
T 4akg_A 1267 KRGIILCGPPGSGKTMIMNNALRNSSLYDVVGINFSKDTT-------TEHILSALHRHTNYVTTSKGLTLLPKSDIKNLV 1339 (2695)
T ss_dssp TCEEEEECSTTSSHHHHHHHHHHSCSSCEEEEEECCTTCC-------HHHHHHHHHHHBCCEEETTTEEEEEBSSSSCEE
T ss_pred CCeEEEECCCCCCHHHHHHHHHhcCCCCceEEEEeecCCC-------HHHHHHHHHHHhhhccccCCccccCCCCCceEE
Confidence 468999999999999999554 444477888888876542 233444444331 123589
Q ss_pred EEEcCccccccccccccCCCchhhHHHHHHHHhhhccccc--------CCeEEEEecccchh-----hchhhhhcCCcee
Q 035561 552 IFVEDFDLFAGVRGQFIHTKQQDHESFINQLLVELDGFEK--------QDGVVLMATTRNIK-----QIDEALQRPGRMD 618 (979)
Q Consensus 552 LfIDEIDaL~~~r~~~~~~~~~~~~~iln~LL~~LDg~~~--------~~~ViVIATTN~pe-----~LDpALlRpgRFd 618 (979)
|||||++.-...+ .+.+.....+.+++. ..++-. -.++.+|||||.|. .|+|+++| ||
T Consensus 1340 lFiDEinmp~~d~-----yg~q~~lelLRq~le-~gg~yd~~~~~~~~~~~i~lIaA~Npp~~gGR~~l~~rllR--rf- 1410 (2695)
T 4akg_A 1340 LFCDEINLPKLDK-----YGSQNVVLFLRQLME-KQGFWKTPENKWVTIERIHIVGACNPPTDPGRIPMSERFTR--HA- 1410 (2695)
T ss_dssp EEEETTTCSCCCS-----SSCCHHHHHHHHHHH-TSSEECTTTCCEEEEESEEEEEEECCTTSTTCCCCCHHHHT--TE-
T ss_pred EEecccccccccc-----cCchhHHHHHHHHHh-cCCEEEcCCCcEEEecCEEEEEecCCCccCCCccCChhhhh--ee-
Confidence 9999998643222 123445566677652 233211 13589999999994 89999999 99
Q ss_pred eEeccCCCCHHHHHHHHHHHHHhc
Q 035561 619 RIFNLQKPTQSEREKILRIAAQET 642 (979)
Q Consensus 619 ~~I~~~~Pd~eeR~~IL~~~l~~~ 642 (979)
..+.++.|+.+++..|++.+++..
T Consensus 1411 ~vi~i~~P~~~~l~~I~~~il~~~ 1434 (2695)
T 4akg_A 1411 AILYLGYPSGKSLSQIYEIYYKAI 1434 (2695)
T ss_dssp EEEECCCCTTTHHHHHHHHHHHHH
T ss_pred eEEEeCCCCHHHHHHHHHHHHHHH
Confidence 789999999999999999988654
No 87
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=99.05 E-value=3.7e-10 Score=113.30 Aligned_cols=103 Identities=17% Similarity=0.238 Sum_probs=64.6
Q ss_pred CCCCCCCcccCc-HHHHHHHHHHHHhhcChhHHHhcCCCCCceeEecCCCCCChHHHHHHHHHHc----CCCEEEeechh
Q 035561 449 NPPIPLKDFASV-ESMREEINEVVAFLQNPSAFQEMGARAPRGVLIVGERGTGKTSLALAIAAEA----RVPVVNVEAQE 523 (979)
Q Consensus 449 ~~~~~f~DIvGl-eevke~L~eiV~~L~~p~~f~~lG~~~P~gVLL~GPPGTGKTtLArAlA~el----g~~~i~Is~sd 523 (979)
..+.+|+++++. ++.++.+..+..++.+ +....+.+++|+||||||||++++++++.+ |..++.+++.+
T Consensus 4 ~~~~~f~~~~~~~~~~~~~~~~~~~~~~~------~~~~~g~~~~l~G~~G~GKTtL~~~i~~~~~~~~g~~~~~~~~~~ 77 (180)
T 3ec2_A 4 YWNANLDTYHPKNVSQNRALLTIRVFVHN------FNPEEGKGLTFVGSPGVGKTHLAVATLKAIYEKKGIRGYFFDTKD 77 (180)
T ss_dssp CTTCCSSSCCCCSHHHHHHHHHHHHHHHS------CCGGGCCEEEECCSSSSSHHHHHHHHHHHHHHHSCCCCCEEEHHH
T ss_pred hhhCccccccCCCHHHHHHHHHHHHHHHh------ccccCCCEEEEECCCCCCHHHHHHHHHHHHHHHcCCeEEEEEHHH
Confidence 456789999873 3344444433333322 223346789999999999999999999987 67788888877
Q ss_pred hhhhhhcccc-hhhHHHHHHHHHhcCCeEEEEcCcccc
Q 035561 524 LEAGLWVGQS-ASNVRELFQTARDLAPVIIFVEDFDLF 560 (979)
Q Consensus 524 L~~~~~vG~~-~~~Ir~lF~~A~~~aP~ILfIDEIDaL 560 (979)
+.. .+.... ......+.... ..|.+|+|||++..
T Consensus 78 ~~~-~~~~~~~~~~~~~~~~~~--~~~~llilDE~~~~ 112 (180)
T 3ec2_A 78 LIF-RLKHLMDEGKDTKFLKTV--LNSPVLVLDDLGSE 112 (180)
T ss_dssp HHH-HHHHHHHHTCCSHHHHHH--HTCSEEEEETCSSS
T ss_pred HHH-HHHHHhcCchHHHHHHHh--cCCCEEEEeCCCCC
Confidence 752 211100 00001222222 26899999999854
No 88
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=98.95 E-value=1.7e-09 Score=110.18 Aligned_cols=104 Identities=21% Similarity=0.224 Sum_probs=64.7
Q ss_pred CCCCCCcccCcHH-HHHHHHHHHHhhcChhHHHhcCCCCCceeEecCCCCCChHHHHHHHHHHc---CCCEEEeechhhh
Q 035561 450 PPIPLKDFASVES-MREEINEVVAFLQNPSAFQEMGARAPRGVLIVGERGTGKTSLALAIAAEA---RVPVVNVEAQELE 525 (979)
Q Consensus 450 ~~~~f~DIvGlee-vke~L~eiV~~L~~p~~f~~lG~~~P~gVLL~GPPGTGKTtLArAlA~el---g~~~i~Is~sdL~ 525 (979)
.+.+|+++++... .++.+..+..++.+.. ....|.+++|+||||||||++|+++++++ +.+++.++++++.
T Consensus 20 ~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~l~G~~GtGKT~la~~i~~~~~~~~~~~~~~~~~~~~ 94 (202)
T 2w58_A 20 LRASLSDVDLNDDGRIKAIRFAERFVAEYE-----PGKKMKGLYLHGSFGVGKTYLLAAIANELAKRNVSSLIVYVPELF 94 (202)
T ss_dssp GCCCTTSSCCSSHHHHHHHHHHHHHHHHCC-----SSCCCCEEEEECSTTSSHHHHHHHHHHHHHTTTCCEEEEEHHHHH
T ss_pred HcCCHhhccCCChhHHHHHHHHHHHHHHhh-----hccCCCeEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEEhHHHH
Confidence 3568999998663 3333333333332110 01134789999999999999999999988 6789999998875
Q ss_pred hhhhcccchhhHHHHHHHHHhcCCeEEEEcCcccc
Q 035561 526 AGLWVGQSASNVRELFQTARDLAPVIIFVEDFDLF 560 (979)
Q Consensus 526 ~~~~vG~~~~~Ir~lF~~A~~~aP~ILfIDEIDaL 560 (979)
...........+..++..... +.+|+|||++..
T Consensus 95 ~~~~~~~~~~~~~~~~~~~~~--~~~lilDei~~~ 127 (202)
T 2w58_A 95 RELKHSLQDQTMNEKLDYIKK--VPVLMLDDLGAE 127 (202)
T ss_dssp HHHHHC---CCCHHHHHHHHH--SSEEEEEEECCC
T ss_pred HHHHHHhccchHHHHHHHhcC--CCEEEEcCCCCC
Confidence 321111111112333443333 469999999765
No 89
>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20
Probab=98.82 E-value=5.5e-08 Score=105.95 Aligned_cols=190 Identities=19% Similarity=0.230 Sum_probs=116.1
Q ss_pred CCCCCCCcccCcHHHHHHHHHHHHhhcChhHHHhcCCCCCceeEecCCCCCChHHHHHHHHHHcCCCEEEeechhh----
Q 035561 449 NPPIPLKDFASVESMREEINEVVAFLQNPSAFQEMGARAPRGVLIVGERGTGKTSLALAIAAEARVPVVNVEAQEL---- 524 (979)
Q Consensus 449 ~~~~~f~DIvGleevke~L~eiV~~L~~p~~f~~lG~~~P~gVLL~GPPGTGKTtLArAlA~elg~~~i~Is~sdL---- 524 (979)
.++...+.++|-++..+.|.+ + .. ..++|+||+|+|||++++.++++++.+++++++...
T Consensus 7 ~~~~~~~~~~gR~~el~~L~~-l---~~------------~~v~i~G~~G~GKT~L~~~~~~~~~~~~~~~~~~~~~~~~ 70 (357)
T 2fna_A 7 SPKDNRKDFFDREKEIEKLKG-L---RA------------PITLVLGLRRTGKSSIIKIGINELNLPYIYLDLRKFEERN 70 (357)
T ss_dssp SCCCSGGGSCCCHHHHHHHHH-T---CS------------SEEEEEESTTSSHHHHHHHHHHHHTCCEEEEEGGGGTTCS
T ss_pred CCCCCHHHhcChHHHHHHHHH-h---cC------------CcEEEECCCCCCHHHHHHHHHHhcCCCEEEEEchhhcccc
Confidence 344566789999977666664 2 21 379999999999999999999998877888887642
Q ss_pred -hh-hhhc-------------------------c-------c-------chhhHHHHHHHHHhc--CCeEEEEcCccccc
Q 035561 525 -EA-GLWV-------------------------G-------Q-------SASNVRELFQTARDL--APVIIFVEDFDLFA 561 (979)
Q Consensus 525 -~~-~~~v-------------------------G-------~-------~~~~Ir~lF~~A~~~--aP~ILfIDEIDaL~ 561 (979)
.. ..+. | . ....+..+++..... .|.+|+|||++.+.
T Consensus 71 ~~~~~~~~~~l~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~vlvlDe~~~~~ 150 (357)
T 2fna_A 71 YISYKDFLLELQKEINKLVKRLPSLLKALKNIQGIVIMGNEIKFNWNRKDRLSFANLLESFEQASKDNVIIVLDEAQELV 150 (357)
T ss_dssp CCCHHHHHHHHHHHHHHHHHHCTTHHHHTTTSTTEEECSSSEEEC-----CCCHHHHHHHHHHTCSSCEEEEEETGGGGG
T ss_pred CCCHHHHHHHHHHHHHHHhhhhhHHHHHhcccceEEecceEEEeccCCcchhhHHHHHHHHHhcCCCCeEEEEECHHHhh
Confidence 00 0000 0 0 012355555555443 39999999999874
Q ss_pred cccccccCCCchhhHHHHHHHHhhhcccccCCeEEEEecccchhhchh---------hhhcCCceeeEeccCCCCHHHHH
Q 035561 562 GVRGQFIHTKQQDHESFINQLLVELDGFEKQDGVVLMATTRNIKQIDE---------ALQRPGRMDRIFNLQKPTQSERE 632 (979)
Q Consensus 562 ~~r~~~~~~~~~~~~~iln~LL~~LDg~~~~~~ViVIATTN~pe~LDp---------ALlRpgRFd~~I~~~~Pd~eeR~ 632 (979)
... +......+..+. +.. .++.+|.|++....+.. .+ .||+...+.+++++.++..
T Consensus 151 ~~~-------~~~~~~~l~~~~---~~~---~~~~~i~~g~~~~~l~~~l~~~~~~~~l--~~r~~~~i~l~~l~~~e~~ 215 (357)
T 2fna_A 151 KLR-------GVNLLPALAYAY---DNL---KRIKFIMSGSEMGLLYDYLRVEDPESPL--FGRAFSTVELKPFSREEAI 215 (357)
T ss_dssp GCT-------TCCCHHHHHHHH---HHC---TTEEEEEEESSHHHHHHHTTTTCTTSTT--TTCCCEEEEECCCCHHHHH
T ss_pred ccC-------chhHHHHHHHHH---HcC---CCeEEEEEcCchHHHHHHHhccCCCCcc--ccCccceeecCCCCHHHHH
Confidence 310 112223333333 211 24455555554322221 12 2366678999999999999
Q ss_pred HHHHHHHHhccchhhhhhhhHHHHHHHcCCCCHHHHHHHHHH
Q 035561 633 KILRIAAQETMDEELIDLVDWRKVAEKTALLRPIELKLVPVA 674 (979)
Q Consensus 633 ~IL~~~l~~~~~~~l~~dvdL~~LA~~T~GfsgaDL~~Lv~a 674 (979)
++++..+..... . .+ +...+...|.|+. .-+..++..
T Consensus 216 ~~l~~~~~~~~~-~-~~--~~~~i~~~t~G~P-~~l~~~~~~ 252 (357)
T 2fna_A 216 EFLRRGFQEADI-D-FK--DYEVVYEKIGGIP-GWLTYFGFI 252 (357)
T ss_dssp HHHHHHHHHHTC-C-CC--CHHHHHHHHCSCH-HHHHHHHHH
T ss_pred HHHHHHHHHcCC-C-CC--cHHHHHHHhCCCH-HHHHHHHHH
Confidence 999987753211 1 11 2378889999954 456665543
No 90
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}
Probab=98.77 E-value=2.6e-07 Score=100.42 Aligned_cols=193 Identities=16% Similarity=0.162 Sum_probs=114.0
Q ss_pred CCCCCCcccCcHHHHHHHHHHHHhhcChhHHHhcCCCCCceeEecCCCCCChHHHHHHHHHHcCCCEEEeechhhh----
Q 035561 450 PPIPLKDFASVESMREEINEVVAFLQNPSAFQEMGARAPRGVLIVGERGTGKTSLALAIAAEARVPVVNVEAQELE---- 525 (979)
Q Consensus 450 ~~~~f~DIvGleevke~L~eiV~~L~~p~~f~~lG~~~P~gVLL~GPPGTGKTtLArAlA~elg~~~i~Is~sdL~---- 525 (979)
++..-+.++|-++..+.|.+.+.. | ..++|+||+|+|||++++.+++..+ .+++++....
T Consensus 7 ~~~~~~~~~gR~~el~~L~~~l~~----------~----~~v~i~G~~G~GKT~Ll~~~~~~~~--~~~~~~~~~~~~~~ 70 (350)
T 2qen_A 7 PKTRREDIFDREEESRKLEESLEN----------Y----PLTLLLGIRRVGKSSLLRAFLNERP--GILIDCRELYAERG 70 (350)
T ss_dssp CCCSGGGSCSCHHHHHHHHHHHHH----------C----SEEEEECCTTSSHHHHHHHHHHHSS--EEEEEHHHHHHTTT
T ss_pred CCCChHhcCChHHHHHHHHHHHhc----------C----CeEEEECCCcCCHHHHHHHHHHHcC--cEEEEeeccccccc
Confidence 445567899999888887765431 2 4799999999999999999999986 6777765431
Q ss_pred --h-----hhh---c-----------------cc----chhhHHHHHHHH----HhcCCeEEEEcCccccccccccccCC
Q 035561 526 --A-----GLW---V-----------------GQ----SASNVRELFQTA----RDLAPVIIFVEDFDLFAGVRGQFIHT 570 (979)
Q Consensus 526 --~-----~~~---v-----------------G~----~~~~Ir~lF~~A----~~~aP~ILfIDEIDaL~~~r~~~~~~ 570 (979)
. ..+ . |. ....+.++++.. ....|.+|+|||++.+....
T Consensus 71 ~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~vlvlDe~~~~~~~~------ 144 (350)
T 2qen_A 71 HITREELIKELQSTISPFQKFQSKFKISLNLKFLTLEPRKLSLREVFRELNDLGEELGEFIVAFDEAQYLRFYG------ 144 (350)
T ss_dssp CBCHHHHHHHHHHHSCSHHHHHHHHTCCCCCGGGTSCGGGCCHHHHHHHHHHHHHHHSCEEEEEETGGGGGGBT------
T ss_pred CCCHHHHHHHHHHHHHHHHhHhhhceeEEEecceeeccccchHHHHHHHHHHHHhccCCEEEEEeCHHHHhccC------
Confidence 0 000 0 00 012233333332 22249999999999874210
Q ss_pred CchhhHHHHHHHHhhhcccccCCeEEEEecccchhhch---------hhhhcCCceeeEeccCCCCHHHHHHHHHHHHHh
Q 035561 571 KQQDHESFINQLLVELDGFEKQDGVVLMATTRNIKQID---------EALQRPGRMDRIFNLQKPTQSEREKILRIAAQE 641 (979)
Q Consensus 571 ~~~~~~~iln~LL~~LDg~~~~~~ViVIATTN~pe~LD---------pALlRpgRFd~~I~~~~Pd~eeR~~IL~~~l~~ 641 (979)
.......+..|-..++.. .++.+|.|++....+. ..+. ||+...+.+++.+.++..++++..+..
T Consensus 145 -~~~~~~~~~~L~~~~~~~---~~~~~il~g~~~~~l~~~l~~~~~~~~l~--~~~~~~i~l~pl~~~e~~~~l~~~~~~ 218 (350)
T 2qen_A 145 -SRGGKELLALFAYAYDSL---PNLKIILTGSEVGLLHDFLKITDYESPLY--GRIAGEVLVKPFDKDTSVEFLKRGFRE 218 (350)
T ss_dssp -TTTTHHHHHHHHHHHHHC---TTEEEEEEESSHHHHHHHHCTTCTTSTTT--TCCCEEEECCCCCHHHHHHHHHHHHHT
T ss_pred -ccchhhHHHHHHHHHHhc---CCeEEEEECCcHHHHHHHHhhcCCCCccc--cCccceeeCCCCCHHHHHHHHHHHHHH
Confidence 001122233332223322 2444444444322122 1222 366678999999999999999887754
Q ss_pred ccchhhhhhhhHHHHHHHcCCCCHHHHHHHHH
Q 035561 642 TMDEELIDLVDWRKVAEKTALLRPIELKLVPV 673 (979)
Q Consensus 642 ~~~~~l~~dvdL~~LA~~T~GfsgaDL~~Lv~ 673 (979)
... ..+...+..+...|.|+. .-+..++.
T Consensus 219 ~~~--~~~~~~~~~i~~~tgG~P-~~l~~~~~ 247 (350)
T 2qen_A 219 VNL--DVPENEIEEAVELLDGIP-GWLVVFGV 247 (350)
T ss_dssp TTC--CCCHHHHHHHHHHHTTCH-HHHHHHHH
T ss_pred cCC--CCCHHHHHHHHHHhCCCH-HHHHHHHH
Confidence 321 123345678888898854 44555543
No 91
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=98.71 E-value=1.2e-08 Score=100.73 Aligned_cols=58 Identities=19% Similarity=0.271 Sum_probs=46.9
Q ss_pred CCceeEecCCCCCChHHHHHHHHHHc---CCCEEEeechhhhhhhhcccchhhHHHHHHHHHhcCCeEEEEcCcccc
Q 035561 487 APRGVLIVGERGTGKTSLALAIAAEA---RVPVVNVEAQELEAGLWVGQSASNVRELFQTARDLAPVIIFVEDFDLF 560 (979)
Q Consensus 487 ~P~gVLL~GPPGTGKTtLArAlA~el---g~~~i~Is~sdL~~~~~vG~~~~~Ir~lF~~A~~~aP~ILfIDEIDaL 560 (979)
....++|+||+|+|||+|++++++.+ |..++++++.++... +....|.+|+|||++.+
T Consensus 35 ~g~~~~l~G~~G~GKTtL~~~i~~~~~~~g~~~~~~~~~~~~~~----------------~~~~~~~lLilDE~~~~ 95 (149)
T 2kjq_A 35 HGQFIYVWGEEGAGKSHLLQAWVAQALEAGKNAAYIDAASMPLT----------------DAAFEAEYLAVDQVEKL 95 (149)
T ss_dssp CCSEEEEESSSTTTTCHHHHHHHHHHHTTTCCEEEEETTTSCCC----------------GGGGGCSEEEEESTTCC
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHHhcCCcEEEEcHHHhhHH----------------HHHhCCCEEEEeCcccc
Confidence 34679999999999999999999988 777889998877521 11235899999999876
No 92
>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*
Probab=98.71 E-value=4.7e-09 Score=116.38 Aligned_cols=122 Identities=16% Similarity=0.169 Sum_probs=72.9
Q ss_pred CCCCCceeEecCCCCCChHHHHHHHHHHcCCCEEEeec--hhhhhhhhcccchhhHHHHHHHHHhcCCeEEEEcCccccc
Q 035561 484 GARAPRGVLIVGERGTGKTSLALAIAAEARVPVVNVEA--QELEAGLWVGQSASNVRELFQTARDLAPVIIFVEDFDLFA 561 (979)
Q Consensus 484 G~~~P~gVLL~GPPGTGKTtLArAlA~elg~~~i~Is~--sdL~~~~~vG~~~~~Ir~lF~~A~~~aP~ILfIDEIDaL~ 561 (979)
|.+....++|+||||||||+||.++|.+.|.++++++. .+.+ +.+....+..+..+++..... + +|+||+++.+.
T Consensus 119 Gi~~gsviLI~GpPGsGKTtLAlqlA~~~G~~VlyIs~~~eE~v-~~~~~~le~~l~~i~~~l~~~-~-LLVIDsI~aL~ 195 (331)
T 2vhj_A 119 HRYASGMVIVTGKGNSGKTPLVHALGEALGGKDKYATVRFGEPL-SGYNTDFNVFVDDIARAMLQH-R-VIVIDSLKNVI 195 (331)
T ss_dssp EEEESEEEEEECSCSSSHHHHHHHHHHHHHTTSCCEEEEBSCSS-TTCBCCHHHHHHHHHHHHHHC-S-EEEEECCTTTC
T ss_pred CCCCCcEEEEEcCCCCCHHHHHHHHHHhCCCCEEEEEecchhhh-hhhhcCHHHHHHHHHHHHhhC-C-EEEEecccccc
Confidence 44555668999999999999999999876555444443 3322 222333444555556666553 3 99999999986
Q ss_pred cccccccCCCchhhHHHHHHHHhhhcccccCCeEEEEecccchhhchhhh
Q 035561 562 GVRGQFIHTKQQDHESFINQLLVELDGFEKQDGVVLMATTRNIKQIDEAL 611 (979)
Q Consensus 562 ~~r~~~~~~~~~~~~~iln~LL~~LDg~~~~~~ViVIATTN~pe~LDpAL 611 (979)
...... .......+.+++++..|.++....++.++++|| +...++++
T Consensus 196 ~~~~~~--s~~G~v~~~lrqlL~~L~~~~k~~gvtVIlttn-p~s~deal 242 (331)
T 2vhj_A 196 GAAGGN--TTSGGISRGAFDLLSDIGAMAASRGCVVIASLN-PTSNDDKI 242 (331)
T ss_dssp -------------CCHHHHHHHHHHHHHHHHHTCEEEEECC-CSSCSSSH
T ss_pred cccccc--cccchHHHHHHHHHHHHHHHHhhCCCEEEEEeC-CcccchhH
Confidence 533210 011112355666777776665555677888888 45555544
No 93
>1ny5_A Transcriptional regulator (NTRC family); AAA+ ATPase, sigma54 activator, bacterial transcription, DIM transcription; HET: ADP; 2.40A {Aquifex aeolicus} SCOP: c.23.1.1 c.37.1.20 PDB: 1ny6_A* 3m0e_A* 1zy2_A*
Probab=98.66 E-value=4.9e-08 Score=110.68 Aligned_cols=122 Identities=21% Similarity=0.310 Sum_probs=78.5
Q ss_pred CCcccCcHHHHHHHHHHHHhhcChhHHHhcCCCCCceeEecCCCCCChHHHHHHHHHHcC---CCEEEeechhhhhhh--
Q 035561 454 LKDFASVESMREEINEVVAFLQNPSAFQEMGARAPRGVLIVGERGTGKTSLALAIAAEAR---VPVVNVEAQELEAGL-- 528 (979)
Q Consensus 454 f~DIvGleevke~L~eiV~~L~~p~~f~~lG~~~P~gVLL~GPPGTGKTtLArAlA~elg---~~~i~Is~sdL~~~~-- 528 (979)
+++++|.....+.+.+.+..+. .....+||+|++|||||++|+++....+ .||+.++|+.+..+.
T Consensus 136 ~~~~ig~s~~m~~l~~~i~~~a----------~~~~~vli~Ge~GtGK~~lAr~ih~~s~r~~~~fv~v~~~~~~~~~~~ 205 (387)
T 1ny5_A 136 EEEYVFESPKMKEILEKIKKIS----------CAECPVLITGESGVGKEVVARLIHKLSDRSKEPFVALNVASIPRDIFE 205 (387)
T ss_dssp CCCCCCCSHHHHHHHHHHHHHT----------TCCSCEEEECSTTSSHHHHHHHHHHHSTTTTSCEEEEETTTSCHHHHH
T ss_pred chhhhhccHHhhHHHHHHHHhc----------CCCCCeEEecCCCcCHHHHHHHHHHhcCCCCCCeEEEecCCCCHHHHH
Confidence 4567887766666665554432 2235689999999999999999998764 699999998763211
Q ss_pred ----------hcccchhhHHHHHHHHHhcCCeEEEEcCccccccccccccCCCchhhHHHHHHHHhhhcc-----ccc--
Q 035561 529 ----------WVGQSASNVRELFQTARDLAPVIIFVEDFDLFAGVRGQFIHTKQQDHESFINQLLVELDG-----FEK-- 591 (979)
Q Consensus 529 ----------~vG~~~~~Ir~lF~~A~~~aP~ILfIDEIDaL~~~r~~~~~~~~~~~~~iln~LL~~LDg-----~~~-- 591 (979)
|.|.... ....|+.|.. ++||||||+.+. ......|+..|+. ...
T Consensus 206 ~elfg~~~g~~tga~~~-~~g~~~~a~~---gtlfldei~~l~--------------~~~q~~Ll~~l~~~~~~~~g~~~ 267 (387)
T 1ny5_A 206 AELFGYEKGAFTGAVSS-KEGFFELADG---GTLFLDEIGELS--------------LEAQAKLLRVIESGKFYRLGGRK 267 (387)
T ss_dssp HHHHCBCTTSSTTCCSC-BCCHHHHTTT---SEEEEESGGGCC--------------HHHHHHHHHHHHHSEECCBTCCS
T ss_pred HHhcCCCCCCCCCcccc-cCCceeeCCC---cEEEEcChhhCC--------------HHHHHHHHHHHhcCcEEeCCCCc
Confidence 1222111 2345666644 899999999883 2233345554442 111
Q ss_pred --CCeEEEEecccc
Q 035561 592 --QDGVVLMATTRN 603 (979)
Q Consensus 592 --~~~ViVIATTN~ 603 (979)
...+.||+|||.
T Consensus 268 ~~~~~~rii~at~~ 281 (387)
T 1ny5_A 268 EIEVNVRILAATNR 281 (387)
T ss_dssp BEECCCEEEEEESS
T ss_pred eeeccEEEEEeCCC
Confidence 124678888887
No 94
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=98.62 E-value=4.4e-08 Score=107.80 Aligned_cols=101 Identities=20% Similarity=0.307 Sum_probs=60.7
Q ss_pred CCCCCcccCcH-HHHHHHHHHHHhhcChhHHHhcCCCCCceeEecCCCCCChHHHHHHHHHHc----CCCEEEeechhhh
Q 035561 451 PIPLKDFASVE-SMREEINEVVAFLQNPSAFQEMGARAPRGVLIVGERGTGKTSLALAIAAEA----RVPVVNVEAQELE 525 (979)
Q Consensus 451 ~~~f~DIvGle-evke~L~eiV~~L~~p~~f~~lG~~~P~gVLL~GPPGTGKTtLArAlA~el----g~~~i~Is~sdL~ 525 (979)
+.+|+++.+.. .....+.....++.+ .+...+.+++|+||||||||+||+++|.++ +.+++.++++++.
T Consensus 120 ~~tfd~f~~~~~~~~~~~~~~~~~i~~------~~~~~~~~lll~G~~GtGKT~La~aia~~~~~~~g~~v~~~~~~~l~ 193 (308)
T 2qgz_A 120 HIHLSDIDVNNASRMEAFSAILDFVEQ------YPSAEQKGLYLYGDMGIGKSYLLAAMAHELSEKKGVSTTLLHFPSFA 193 (308)
T ss_dssp SCCGGGSCCCSHHHHHHHHHHHHHHHH------CSCSSCCEEEEECSTTSSHHHHHHHHHHHHHHHSCCCEEEEEHHHHH
T ss_pred hCCHhhCcCCChHHHHHHHHHHHHHHh------ccccCCceEEEECCCCCCHHHHHHHHHHHHHHhcCCcEEEEEHHHHH
Confidence 46899998754 322233323333321 111135789999999999999999999865 4789999988876
Q ss_pred hhhhcc-cchhhHHHHHHHHHhcCCeEEEEcCcccc
Q 035561 526 AGLWVG-QSASNVRELFQTARDLAPVIIFVEDFDLF 560 (979)
Q Consensus 526 ~~~~vG-~~~~~Ir~lF~~A~~~aP~ILfIDEIDaL 560 (979)
.. ... .....+...+.... .+.+|+|||++..
T Consensus 194 ~~-l~~~~~~~~~~~~~~~~~--~~~lLiiDdig~~ 226 (308)
T 2qgz_A 194 ID-VKNAISNGSVKEEIDAVK--NVPVLILDDIGAE 226 (308)
T ss_dssp HH-HHCCCC----CCTTHHHH--TSSEEEEETCCC-
T ss_pred HH-HHHHhccchHHHHHHHhc--CCCEEEEcCCCCC
Confidence 32 221 11111122222222 3579999999754
No 95
>3kw6_A 26S protease regulatory subunit 8; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Homo sapiens}
Probab=98.61 E-value=6.6e-08 Score=85.25 Aligned_cols=55 Identities=27% Similarity=0.277 Sum_probs=48.1
Q ss_pred CCCCHHHHHHHHHHHHHhccchhhhhhhhHHHHHHHcCCCCHHHHHHHHHHHhhhhhc
Q 035561 624 QKPTQSEREKILRIAAQETMDEELIDLVDWRKVAEKTALLRPIELKLVPVALEGSAFR 681 (979)
Q Consensus 624 ~~Pd~eeR~~IL~~~l~~~~~~~l~~dvdL~~LA~~T~GfsgaDL~~Lv~aa~~aa~r 681 (979)
|.||.++|.+||+.++++. +..+++|+..||+.|+||||+||.++|+.+...+++
T Consensus 1 plPd~~~R~~Il~~~l~~~---~~~~~~dl~~la~~t~G~SGADi~~l~~eA~~~a~~ 55 (78)
T 3kw6_A 1 PPPNEEARLDILKIHSRKM---NLTRGINLRKIAELMPGASGAEVKGVCTEAGMYALR 55 (78)
T ss_dssp CCCCHHHHHHHHHHHHTTS---EECTTCCHHHHHHTCTTCCHHHHHHHHHHHHHHHHH
T ss_pred CcCCHHHHHHHHHHHhcCC---CCCCccCHHHHHHHcCCCCHHHHHHHHHHHHHHHHH
Confidence 6899999999999999876 445789999999999999999999999877665544
No 96
>2r2a_A Uncharacterized protein; zonular occludens toxin, structural genomics, APC84050.2, PS protein structure initiative; HET: MSE; 1.82A {Neisseria meningitidis MC58}
Probab=98.60 E-value=6.2e-08 Score=100.46 Aligned_cols=128 Identities=17% Similarity=0.192 Sum_probs=81.8
Q ss_pred ceeEecCCCCCChHHHHHHHHHH--------cC-CCEEEeechhhhhhhh---------ccc-----chhhHHHHHHHHH
Q 035561 489 RGVLIVGERGTGKTSLALAIAAE--------AR-VPVVNVEAQELEAGLW---------VGQ-----SASNVRELFQTAR 545 (979)
Q Consensus 489 ~gVLL~GPPGTGKTtLArAlA~e--------lg-~~~i~Is~sdL~~~~~---------vG~-----~~~~Ir~lF~~A~ 545 (979)
--.|++|+||||||++|.+.+.. .| .+++..++.++..+.. ... ....+.+++..+.
T Consensus 6 mi~l~tG~pGsGKT~~a~~~~~~~~~~~~~~~g~r~v~~~~~~gL~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~ 85 (199)
T 2r2a_A 6 EICLITGTPGSGKTLKMVSMMANDEMFKPDENGIRRKVFTNIKGLKIPHTYIETDAKKLPKSTDEQLSAHDMYEWIKKPE 85 (199)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHCGGGSCCTTSCCCCEEECCTTBCSCCEEEECCTTTCSSCCSSCEEGGGHHHHTTSGG
T ss_pred eEEEEEeCCCCCHHHHHHHHHHHHHhhcccccCceEEEEecCCCccccccccchhhhhccccCcccccHHHHHHHhhccc
Confidence 45789999999999999886544 34 7777777776642221 011 1122333222122
Q ss_pred hcCCeEEEEcCccccccccccccCCCchhhHHHHHHHHhhhcccccCCeEEEEecccchhhchhhhhcCCceeeEeccCC
Q 035561 546 DLAPVIIFVEDFDLFAGVRGQFIHTKQQDHESFINQLLVELDGFEKQDGVVLMATTRNIKQIDEALQRPGRMDRIFNLQK 625 (979)
Q Consensus 546 ~~aP~ILfIDEIDaL~~~r~~~~~~~~~~~~~iln~LL~~LDg~~~~~~ViVIATTN~pe~LDpALlRpgRFd~~I~~~~ 625 (979)
..++||+|||++.+.+.+... .+.. .++..+.. ....++-||.+|+.++.|+.++++ |++..++++.
T Consensus 86 -~~~~vliIDEAq~l~~~~~~~-----~e~~----rll~~l~~-~r~~~~~iil~tq~~~~l~~~lr~--ri~~~~~l~~ 152 (199)
T 2r2a_A 86 -NIGSIVIVDEAQDVWPARSAG-----SKIP----ENVQWLNT-HRHQGIDIFVLTQGPKLLDQNLRT--LVRKHYHIAS 152 (199)
T ss_dssp -GTTCEEEETTGGGTSBCCCTT-----CCCC----HHHHGGGG-TTTTTCEEEEEESCGGGBCHHHHT--TEEEEEEEEE
T ss_pred -cCceEEEEEChhhhccCcccc-----chhH----HHHHHHHh-cCcCCeEEEEECCCHHHHhHHHHH--HhheEEEEcC
Confidence 357999999999997654321 1111 23444443 233456667778889999999998 9999999988
Q ss_pred CCHH
Q 035561 626 PTQS 629 (979)
Q Consensus 626 Pd~e 629 (979)
|...
T Consensus 153 ~~~~ 156 (199)
T 2r2a_A 153 NKMG 156 (199)
T ss_dssp CSSC
T ss_pred cccC
Confidence 6543
No 97
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=98.52 E-value=5.8e-08 Score=110.04 Aligned_cols=120 Identities=20% Similarity=0.190 Sum_probs=78.7
Q ss_pred cCCCCCceeEecCCCCCChHHHHHHHHHHcCCCEEEeechhhhhhhhcccchhhHHHHHHHHHhcCCeEEEEcCcccccc
Q 035561 483 MGARAPRGVLIVGERGTGKTSLALAIAAEARVPVVNVEAQELEAGLWVGQSASNVRELFQTARDLAPVIIFVEDFDLFAG 562 (979)
Q Consensus 483 lG~~~P~gVLL~GPPGTGKTtLArAlA~elg~~~i~Is~sdL~~~~~vG~~~~~Ir~lF~~A~~~aP~ILfIDEIDaL~~ 562 (979)
++++.+..++|+|||||||||+++++++..+..++.+...+- ... |......+.+++|+||++.+..
T Consensus 164 ~~i~~~~~i~l~G~~GsGKSTl~~~l~~~~~g~~~~~~~~~~-----------~~~--~~lg~~~q~~~~l~dd~~~~~~ 230 (377)
T 1svm_A 164 YNIPKKRYWLFKGPIDSGKTTLAAALLELCGGKALNVNLPLD-----------RLN--FELGVAIDQFLVVFEDVKGTGG 230 (377)
T ss_dssp HCCTTCCEEEEECSTTSSHHHHHHHHHHHHCCEEECCSSCTT-----------THH--HHHGGGTTCSCEEETTCCCSTT
T ss_pred cccCCCCEEEEECCCCCCHHHHHHHHHhhcCCcEEEEeccch-----------hHH--HHHHHhcchhHHHHHHHHHHHH
Confidence 477888899999999999999999999988776655433221 000 1111122457789999998865
Q ss_pred -ccccccCCCchhhHHHHHHHHhhhcccccCCeEEEEecccchhhchhhhhcCCceeeEeccCC
Q 035561 563 -VRGQFIHTKQQDHESFINQLLVELDGFEKQDGVVLMATTRNIKQIDEALQRPGRMDRIFNLQK 625 (979)
Q Consensus 563 -~r~~~~~~~~~~~~~iln~LL~~LDg~~~~~~ViVIATTN~pe~LDpALlRpgRFd~~I~~~~ 625 (979)
.++.. .+. .. .....+...+|| .+.|+++||+++.+ +++++|||++..+....
T Consensus 231 ~~r~l~--~~~-~~-~~~~~l~~~ldG-----~v~v~~~tn~~~~l-~alf~pg~ld~~~~~l~ 284 (377)
T 1svm_A 231 ESRDLP--SGQ-GI-NNLDNLRDYLDG-----SVKVNLEKKHLNKR-TQIFPPGIVTMNEYSVP 284 (377)
T ss_dssp TTTTCC--CCS-HH-HHHHTTHHHHHC-----SSCEEECCSSSCCE-EECCCCEEEEECSCCCC
T ss_pred HHhhcc--ccC-cc-hHHHHHHHHhcC-----CCeEeeccCchhhH-HHhhcCcccChhHHhhc
Confidence 22210 001 11 022334444554 34678889999999 79999999998877755
No 98
>2krk_A 26S protease regulatory subunit 8; structural genomics, northeast structural genomics consortium (NESG), target HR3102A, PSI-2; NMR {Homo sapiens}
Probab=98.52 E-value=2e-08 Score=90.76 Aligned_cols=58 Identities=26% Similarity=0.269 Sum_probs=50.1
Q ss_pred ccCCCCHHHHHHHHHHHHHhccchhhhhhhhHHHHHHHcCCCCHHHHHHHHHHHhhhhhcc
Q 035561 622 NLQKPTQSEREKILRIAAQETMDEELIDLVDWRKVAEKTALLRPIELKLVPVALEGSAFRS 682 (979)
Q Consensus 622 ~~~~Pd~eeR~~IL~~~l~~~~~~~l~~dvdL~~LA~~T~GfsgaDL~~Lv~aa~~aa~r~ 682 (979)
.-.+||.++|.+||+.++++. ++.+++|+..||+.|+||||+||.++|+.+...++++
T Consensus 7 ~~~~Pd~~~R~~IL~~~l~~~---~l~~dvdl~~LA~~T~G~SGADL~~l~~eAa~~alr~ 64 (86)
T 2krk_A 7 HHSHPNEEARLDILKIHSRKM---NLTRGINLRKIAELMPGASGAEVKGVCTEAGMYALRE 64 (86)
T ss_dssp CCCCCCHHHHHHHHHHHTTTS---EECTTCCCHHHHHTCSSCCHHHHHHHHHHHHHHHHHT
T ss_pred CCCCcCHHHHHHHHHHHHcCC---CCCcccCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHH
Confidence 346899999999999999876 4557899999999999999999999998877666554
No 99
>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A
Probab=98.51 E-value=8.2e-07 Score=120.61 Aligned_cols=128 Identities=16% Similarity=0.165 Sum_probs=93.9
Q ss_pred CceeEecCCCCCChHHHHHHHHHHcCCCEEEeechhhhhhhhcccchhhHHHHHHHHHhcCCeEEEEcCccccccccccc
Q 035561 488 PRGVLIVGERGTGKTSLALAIAAEARVPVVNVEAQELEAGLWVGQSASNVRELFQTARDLAPVIIFVEDFDLFAGVRGQF 567 (979)
Q Consensus 488 P~gVLL~GPPGTGKTtLArAlA~elg~~~i~Is~sdL~~~~~vG~~~~~Ir~lF~~A~~~aP~ILfIDEIDaL~~~r~~~ 567 (979)
..|+++.||||||||++++++|+.+|.+++.++|++-.. .+.+..+|..+.. .++.+++||++.+-+
T Consensus 645 ~~~~~l~GpaGtGKTe~vk~LA~~lg~~~v~~nc~e~ld-------~~~lg~~~~g~~~-~Gaw~~~DE~nr~~~----- 711 (2695)
T 4akg_A 645 KYGGCFFGPAGTGKTETVKAFGQNLGRVVVVFNCDDSFD-------YQVLSRLLVGITQ-IGAWGCFDEFNRLDE----- 711 (2695)
T ss_dssp TCEEEEECCTTSCHHHHHHHHHHTTTCCCEEEETTSSCC-------HHHHHHHHHHHHH-HTCEEEEETTTSSCH-----
T ss_pred CCCCcccCCCCCCcHHHHHHHHHHhCCcEEEEECCCCCC-------hhHhhHHHHHHHh-cCCEeeehhhhhcCh-----
Confidence 357999999999999999999999999999999987542 2455667777765 468999999997632
Q ss_pred cCCCchhhHHHHHHHH----hhhcc-----------cccCCeEEEEecccc----hhhchhhhhcCCceeeEeccCCCCH
Q 035561 568 IHTKQQDHESFINQLL----VELDG-----------FEKQDGVVLMATTRN----IKQIDEALQRPGRMDRIFNLQKPTQ 628 (979)
Q Consensus 568 ~~~~~~~~~~iln~LL----~~LDg-----------~~~~~~ViVIATTN~----pe~LDpALlRpgRFd~~I~~~~Pd~ 628 (979)
+....+++.+ ..+.. +.-++...|++|.|. ...||++|++ || +.+.+..||.
T Consensus 712 ------evLs~l~~~l~~i~~al~~~~~~i~~~g~~i~l~~~~~vfiT~NPgy~g~~eLP~~Lk~--~F-r~v~m~~Pd~ 782 (2695)
T 4akg_A 712 ------KVLSAVSANIQQIQNGLQVGKSHITLLEEETPLSPHTAVFITLNPGYNGRSELPENLKK--SF-REFSMKSPQS 782 (2695)
T ss_dssp ------HHHHHHHHHHHHHHHHHHHTCSEEECSSSEEECCTTCEEEEEECCCSSSSCCCCHHHHT--TE-EEEECCCCCH
T ss_pred ------HHHHHHHHHHHHHHHHHHcCCcEEeeCCcEEecCCCceEEEEeCCCccCcccccHHHHh--he-EEEEeeCCCH
Confidence 2223332222 22211 122345678888883 5679999999 88 7899999999
Q ss_pred HHHHHHHHH
Q 035561 629 SEREKILRI 637 (979)
Q Consensus 629 eeR~~IL~~ 637 (979)
+...+|+-.
T Consensus 783 ~~i~ei~l~ 791 (2695)
T 4akg_A 783 GTIAEMILQ 791 (2695)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 998888643
No 100
>3f8t_A Predicted ATPase involved in replication control, CDC46/MCM family; helicase, MCM homolog, DNA replication, ATP-binding, DNA-binding; 1.90A {Methanopyrus kandleri AV19}
Probab=98.44 E-value=9.7e-07 Score=102.21 Aligned_cols=146 Identities=15% Similarity=0.106 Sum_probs=82.1
Q ss_pred ccCcHHHHHHHHHHHHhhcChhHHHhcCCCCCceeEecCCCCCChHHHHHHH-HHHcCCCEEEeec-----hhhhhhhhc
Q 035561 457 FASVESMREEINEVVAFLQNPSAFQEMGARAPRGVLIVGERGTGKTSLALAI-AAEARVPVVNVEA-----QELEAGLWV 530 (979)
Q Consensus 457 IvGleevke~L~eiV~~L~~p~~f~~lG~~~P~gVLL~GPPGTGKTtLArAl-A~elg~~~i~Is~-----sdL~~~~~v 530 (979)
|.|++++|..|.-.+ +....+ .+...+|||.|+||| ||++|+++ ++.+....+ +++ ..+... +.
T Consensus 215 I~G~e~vK~aLll~L--~GG~~k-----~rgdihVLL~G~PGt-KS~Lar~i~~~i~pR~~f-t~g~~ss~~gLt~s-~r 284 (506)
T 3f8t_A 215 LPGAEEVGKMLALQL--FSCVGK-----NSERLHVLLAGYPVV-CSEILHHVLDHLAPRGVY-VDLRRTELTDLTAV-LK 284 (506)
T ss_dssp STTCHHHHHHHHHHH--TTCCSS-----GGGCCCEEEESCHHH-HHHHHHHHHHHTCSSEEE-EEGGGCCHHHHSEE-EE
T ss_pred cCCCHHHHHHHHHHH--cCCccc-----cCCceeEEEECCCCh-HHHHHHHHHHHhCCCeEE-ecCCCCCccCceEE-EE
Confidence 899999887775222 111000 122347999999999 99999999 665544332 222 112111 00
Q ss_pred cc-chhhHHHHHHHHHhcCCeEEEEcCccccccccccccCCCchhhHHHHHHHHhhhcc-------cccCCeEEEEeccc
Q 035561 531 GQ-SASNVRELFQTARDLAPVIIFVEDFDLFAGVRGQFIHTKQQDHESFINQLLVELDG-------FEKQDGVVLMATTR 602 (979)
Q Consensus 531 G~-~~~~Ir~lF~~A~~~aP~ILfIDEIDaL~~~r~~~~~~~~~~~~~iln~LL~~LDg-------~~~~~~ViVIATTN 602 (979)
+. +...-...+..|. .+|+|||||+.+- ......|+..|+. ..-...+.||||+|
T Consensus 285 ~~tG~~~~~G~l~LAd---gGvl~lDEIn~~~--------------~~~qsaLlEaMEe~~VtI~G~~lparf~VIAA~N 347 (506)
T 3f8t_A 285 EDRGWALRAGAAVLAD---GGILAVDHLEGAP--------------EPHRWALMEAMDKGTVTVDGIALNARCAVLAAIN 347 (506)
T ss_dssp ESSSEEEEECHHHHTT---TSEEEEECCTTCC--------------HHHHHHHHHHHHHSEEEETTEEEECCCEEEEEEC
T ss_pred cCCCcccCCCeeEEcC---CCeeehHhhhhCC--------------HHHHHHHHHHHhCCcEEECCEEcCCCeEEEEEeC
Confidence 00 0000011233332 4899999998762 3344555555542 11124588999999
Q ss_pred chh-----------hchhhhhcCCceeeE-eccCCCCHHHH
Q 035561 603 NIK-----------QIDEALQRPGRMDRI-FNLQKPTQSER 631 (979)
Q Consensus 603 ~pe-----------~LDpALlRpgRFd~~-I~~~~Pd~eeR 631 (979)
... .|++++++ |||.. +.++.|+.+.-
T Consensus 348 P~~~yd~~~s~~~~~Lp~alLD--RFDLi~i~~d~pd~e~d 386 (506)
T 3f8t_A 348 PGEQWPSDPPIARIDLDQDFLS--HFDLIAFLGVDPRPGEP 386 (506)
T ss_dssp CCC--CCSCGGGGCCSCHHHHT--TCSEEEETTC-------
T ss_pred cccccCCCCCccccCCChHHhh--heeeEEEecCCCChhHh
Confidence 864 78999999 99864 55677776553
No 101
>3vlf_B 26S protease regulatory subunit 7 homolog; heat repeat, chaperone, chaperone-protein binding complex; HET: DNA; 3.80A {Saccharomyces cerevisiae} PDB: 4a3v_B*
Probab=98.43 E-value=2.2e-07 Score=84.18 Aligned_cols=52 Identities=19% Similarity=0.208 Sum_probs=45.0
Q ss_pred CHHHHHHHHHHHHHhccchhhhhhhhHHHHHHHcCCCCHHHHHHHHHHHhhhhhc
Q 035561 627 TQSEREKILRIAAQETMDEELIDLVDWRKVAEKTALLRPIELKLVPVALEGSAFR 681 (979)
Q Consensus 627 d~eeR~~IL~~~l~~~~~~~l~~dvdL~~LA~~T~GfsgaDL~~Lv~aa~~aa~r 681 (979)
|.++|.+||+.|+++. +..+++|+..||+.|+||||+||.++|+.+...+++
T Consensus 2 d~~~R~~Il~~~~~~~---~~~~dvdl~~lA~~t~G~SGADl~~l~~eAa~~a~r 53 (88)
T 3vlf_B 2 DLEGRANIFRIHSKSM---SVERGIRWELISRLCPNSTGAELRSVCTEAGMFAIR 53 (88)
T ss_dssp CSSHHHHHHHHHHTTS---CBCSCCCHHHHHHTCSSCCHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHCCC---CCCCccCHHHHHHHcCCCcHHHHHHHHHHHHHHHHH
Confidence 6789999999999876 455789999999999999999999999877665554
No 102
>3dzd_A Transcriptional regulator (NTRC family); sigma43 activator, AAA+ ATPase, response regulator, transcriptional activator, ATP-binding; HET: ADP; 2.40A {Aquifex aeolicus} PDB: 1zit_A 2jrl_A
Probab=98.43 E-value=9.2e-07 Score=99.66 Aligned_cols=157 Identities=18% Similarity=0.279 Sum_probs=93.8
Q ss_pred CcccCcHHHHHHHHHHHHhhcChhHHHhcCCCCCceeEecCCCCCChHHHHHHHHHHcCC--CEEEeechhhhhhh----
Q 035561 455 KDFASVESMREEINEVVAFLQNPSAFQEMGARAPRGVLIVGERGTGKTSLALAIAAEARV--PVVNVEAQELEAGL---- 528 (979)
Q Consensus 455 ~DIvGleevke~L~eiV~~L~~p~~f~~lG~~~P~gVLL~GPPGTGKTtLArAlA~elg~--~~i~Is~sdL~~~~---- 528 (979)
.+++|.......+.+.+..+. +....+|++|++||||+++|+++....+. +|+.++|..+..+.
T Consensus 129 ~~~ig~s~~~~~~~~~~~~~a----------~~~~~vli~GesGtGKe~lAr~ih~~s~r~~~fv~vnc~~~~~~~~~~~ 198 (368)
T 3dzd_A 129 IEFVGEHPKILEIKRLIPKIA----------KSKAPVLITGESGTGKEIVARLIHRYSGRKGAFVDLNCASIPQELAESE 198 (368)
T ss_dssp CCCCCCSHHHHHHHHHHHHHH----------TSCSCEEEECCTTSSHHHHHHHHHHHHCCCSCEEEEESSSSCTTTHHHH
T ss_pred ccccccchHHHHHHhhhhhhh----------ccchhheEEeCCCchHHHHHHHHHHhccccCCcEEEEcccCChHHHHHH
Confidence 468888877777766554432 12345999999999999999999988754 39999998753211
Q ss_pred --------hcccchhhHHHHHHHHHhcCCeEEEEcCccccccccccccCCCchhhHHHHHHHHhhhcc--c---ccC---
Q 035561 529 --------WVGQSASNVRELFQTARDLAPVIIFVEDFDLFAGVRGQFIHTKQQDHESFINQLLVELDG--F---EKQ--- 592 (979)
Q Consensus 529 --------~vG~~~~~Ir~lF~~A~~~aP~ILfIDEIDaL~~~r~~~~~~~~~~~~~iln~LL~~LDg--~---~~~--- 592 (979)
|.|... .-...|+.|.. +.||||||+.+. ......||..|+. + ..+
T Consensus 199 lfg~~~g~~tga~~-~~~g~~~~a~~---gtlfldei~~l~--------------~~~Q~~Ll~~l~~~~~~~~g~~~~~ 260 (368)
T 3dzd_A 199 LFGHEKGAFTGALT-RKKGKLELADQ---GTLFLDEVGELD--------------QRVQAKLLRVLETGSFTRLGGNQKI 260 (368)
T ss_dssp HHEECSCSSSSCCC-CEECHHHHTTT---SEEEEETGGGSC--------------HHHHHHHHHHHHHSEECCBTCCCBE
T ss_pred hcCccccccCCccc-ccCChHhhcCC---CeEEecChhhCC--------------HHHHHHHHHHHHhCCcccCCCCcce
Confidence 111111 11235666644 899999999883 2233455555542 1 111
Q ss_pred -CeEEEEecccc-hh-hch-----hhhhcCCcee-eEeccCCCCH--HHHHHHHHHHHHh
Q 035561 593 -DGVVLMATTRN-IK-QID-----EALQRPGRMD-RIFNLQKPTQ--SEREKILRIAAQE 641 (979)
Q Consensus 593 -~~ViVIATTN~-pe-~LD-----pALlRpgRFd-~~I~~~~Pd~--eeR~~IL~~~l~~ 641 (979)
-.+.+|+|||. +. .+. +.|.. |+. ..|.+|+... ++...++++++++
T Consensus 261 ~~~~rii~at~~~l~~~v~~g~fr~dL~~--rl~~~~i~lPpLreR~~Di~~l~~~~l~~ 318 (368)
T 3dzd_A 261 EVDIRVISATNKNLEEEIKKGNFREDLYY--RLSVFQIYLPPLRERGKDVILLAEYFLKK 318 (368)
T ss_dssp ECCCEEEEEESSCHHHHHHTTSSCHHHHH--HHTSEEEECCCGGGSTTHHHHHHHHHHHH
T ss_pred eeeeEEEEecCCCHHHHHHcCCccHHHHH--HhCCeEEeCCChhhchhhHHHHHHHHHHH
Confidence 13567777775 22 122 23333 332 2466666655 5666677776654
No 103
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=98.42 E-value=2.7e-07 Score=121.87 Aligned_cols=116 Identities=22% Similarity=0.237 Sum_probs=82.1
Q ss_pred CCCCCceeEecCCCCCChHHHHHHHHHHc---CCCEEEeechhhhhh---hhcc------------cchhhHHHHHHHHH
Q 035561 484 GARAPRGVLIVGERGTGKTSLALAIAAEA---RVPVVNVEAQELEAG---LWVG------------QSASNVRELFQTAR 545 (979)
Q Consensus 484 G~~~P~gVLL~GPPGTGKTtLArAlA~el---g~~~i~Is~sdL~~~---~~vG------------~~~~~Ir~lF~~A~ 545 (979)
|++.+++++|+||||||||+||.+++.++ |..+..++..+.+.. ...| .++..++.++..++
T Consensus 1423 Gi~~g~~vll~GppGtGKT~LA~ala~ea~~~G~~v~Fi~~e~~~~~l~a~~~G~dl~~l~v~~~~~~E~~l~~~~~lvr 1502 (2050)
T 3cmu_A 1423 GLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTGEQALEICDALAR 1502 (2050)
T ss_dssp SEETTSEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEECTTSCCCHHHHHHTTCCTTTCEEECCSSHHHHHHHHHHHHH
T ss_pred CccCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEEEcccccCHHHHHHcCCCchhceeecCChHHHHHHHHHHHHh
Confidence 47888999999999999999999998876 556677776543211 1112 34566777788888
Q ss_pred hcCCeEEEEcCcccccccc---ccccCCCchh-hHHHHHHHHhhhcccccCCeEEEEec
Q 035561 546 DLAPVIIFVEDFDLFAGVR---GQFIHTKQQD-HESFINQLLVELDGFEKQDGVVLMAT 600 (979)
Q Consensus 546 ~~aP~ILfIDEIDaL~~~r---~~~~~~~~~~-~~~iln~LL~~LDg~~~~~~ViVIAT 600 (979)
..+|++||||+++++.+.+ +.. +..+.. ..+.++++|.+|.++....+++||.|
T Consensus 1503 ~~~~~lVVIDsi~al~p~~~~~g~~-~~~~~~~~~R~lsqlL~~L~~~~~~~~v~VI~t 1560 (2050)
T 3cmu_A 1503 SGAVDVIVVDSVAALTPKAEIEGEI-GDSHMGLAARMMSQAMRKLAGNLKQSNTLLIFI 1560 (2050)
T ss_dssp HTCCSEEEESCGGGCCCHHHHHSCT-TCCCTTHHHHHHHHHHHHHHHHHHTTTCEEEEE
T ss_pred cCCCCEEEEcChhHhcccccccccc-cccccchHHHHHHHHHHHHHHHHHhCCcEEEEE
Confidence 8899999999999998753 211 111111 35778888888888766666666654
No 104
>3aji_B S6C, proteasome (prosome, macropain) 26S subunit, ATPA; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dwz_B* 2dvw_B*
Probab=98.31 E-value=3.2e-07 Score=81.68 Aligned_cols=73 Identities=10% Similarity=0.115 Sum_probs=55.6
Q ss_pred CCHHHHHHHHHHHHHhccchhhhhhhhHHHHHHHcCCCCHHHHHHHHHHHhhhhhccCCCChHHHhhhcchhhhccCCCc
Q 035561 626 PTQSEREKILRIAAQETMDEELIDLVDWRKVAEKTALLRPIELKLVPVALEGSAFRSKFLDTDELMSYCGWFATFSGVVP 705 (979)
Q Consensus 626 Pd~eeR~~IL~~~l~~~~~~~l~~dvdL~~LA~~T~GfsgaDL~~Lv~aa~~aa~r~~~~s~~ei~~~~d~~aAl~~~~P 705 (979)
.|.++|.+||+.++++. +..+++|+..||+.|+||||+||.++|+.+...++++... ..+..||..|++.+.|
T Consensus 1 ~d~~~R~~Il~~~l~~~---~~~~~vdl~~la~~t~G~SGADi~~l~~eA~~~a~~~~~~----~i~~~df~~Al~~~~p 73 (83)
T 3aji_B 1 MDRRQKRLIFSTITSKM---NLSEEVDLEDYVARPDKISGADINSICQESGMLAVRENRY----IVLAKDFEKAYKTVIK 73 (83)
T ss_dssp CCHHHHHHHHHHHHTTS---CBCTTCCTHHHHTSSCCCCHHHHHHHHHHHHHGGGTSCCS----SBCHHHHHHHHHHHCC
T ss_pred CCHHHHHHHHHHHhCCC---CCCcccCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhccC----CcCHHHHHHHHHHHcc
Confidence 37899999999999875 4457899999999999999999999999888887775421 1334445555544444
No 105
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=98.21 E-value=1.5e-07 Score=122.91 Aligned_cols=79 Identities=22% Similarity=0.233 Sum_probs=56.0
Q ss_pred CCCCCceeEecCCCCCChHHHHHHHHHHc---CCCEEEeechhhhhh---hhcc--------cchhhHHHHHHHHH----
Q 035561 484 GARAPRGVLIVGERGTGKTSLALAIAAEA---RVPVVNVEAQELEAG---LWVG--------QSASNVRELFQTAR---- 545 (979)
Q Consensus 484 G~~~P~gVLL~GPPGTGKTtLArAlA~el---g~~~i~Is~sdL~~~---~~vG--------~~~~~Ir~lF~~A~---- 545 (979)
|+.++..++|+||||+|||+||..+|.++ +.++++++....... ...| .....+.+++..++
T Consensus 728 Gl~~G~lVlI~G~PG~GKTtLal~lA~~aa~~g~~VlyiS~Ees~~ql~A~~lGvd~~~L~i~~~~~leei~~~l~~lv~ 807 (1706)
T 3cmw_A 728 GLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTGEQALEICDALAR 807 (1706)
T ss_dssp SEETTSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEECTTSCCCHHHHHHTTCCGGGCEEECCSSHHHHHHHHHHHHH
T ss_pred CcCCCceEEEECCCCCCcHHHHHHHHHHHHHcCCCeEEEeccchHHHHHHHHcCCChhheEEecCCcHHHHHHHHHHHHH
Confidence 46777889999999999999999998875 457888887543211 1112 11223445555554
Q ss_pred hcCCeEEEEcCcccccc
Q 035561 546 DLAPVIIFVEDFDLFAG 562 (979)
Q Consensus 546 ~~aP~ILfIDEIDaL~~ 562 (979)
...|++|+||.+..+.+
T Consensus 808 ~~~~~lVVIDsLq~l~~ 824 (1706)
T 3cmw_A 808 SGAVDVIVVDSVAALTP 824 (1706)
T ss_dssp HTCCSEEEESCSTTCCC
T ss_pred ccCCCEEEEechhhhcc
Confidence 46899999999999874
No 106
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=98.18 E-value=4.1e-06 Score=114.69 Aligned_cols=138 Identities=19% Similarity=0.258 Sum_probs=91.9
Q ss_pred CceeEecCCCCCChHHHHHHHHHHc-CCCEEEeechhhhhhhhcccchhhHHHHHHHH----H------------hcCCe
Q 035561 488 PRGVLIVGERGTGKTSLALAIAAEA-RVPVVNVEAQELEAGLWVGQSASNVRELFQTA----R------------DLAPV 550 (979)
Q Consensus 488 P~gVLL~GPPGTGKTtLArAlA~el-g~~~i~Is~sdL~~~~~vG~~~~~Ir~lF~~A----~------------~~aP~ 550 (979)
.++|||+||||||||++++...+.+ +.+++.++++.-. +...+...++.. + ....+
T Consensus 1304 ~~pvLL~GptGtGKT~li~~~L~~l~~~~~~~infS~~T-------ta~~l~~~~e~~~e~~~~~~~G~~~~p~~~Gk~~ 1376 (3245)
T 3vkg_A 1304 HRPLILCGPPGSGKTMTLTSTLRAFPDFEVVSLNFSSAT-------TPELLLKTFDHHCEYKRTPSGETVLRPTQLGKWL 1376 (3245)
T ss_dssp TCCCEEESSTTSSHHHHHHHHGGGCTTEEEEEECCCTTC-------CHHHHHHHHHHHEEEEECTTSCEEEEESSTTCEE
T ss_pred CCcEEEECCCCCCHHHHHHHHHHhCCCCceEEEEeeCCC-------CHHHHHHHHhhcceEEeccCCCcccCCCcCCceE
Confidence 3569999999999998776655444 6678888887643 223444444431 1 01237
Q ss_pred EEEEcCccccccccccccCCCchhhHHHHHHHHhhhccc--------ccCCeEEEEecccch-----hhchhhhhcCCce
Q 035561 551 IIFVEDFDLFAGVRGQFIHTKQQDHESFINQLLVELDGF--------EKQDGVVLMATTRNI-----KQIDEALQRPGRM 617 (979)
Q Consensus 551 ILfIDEIDaL~~~r~~~~~~~~~~~~~iln~LL~~LDg~--------~~~~~ViVIATTN~p-----e~LDpALlRpgRF 617 (979)
|+||||++- +..+. .+.+..-..+.+++..- ++ ..-.++.+|||+|.| ..|+++++| ||
T Consensus 1377 VlFiDDiNm--p~~D~---yGtQ~~ielLrqlld~~-g~yd~~~~~~~~i~d~~~vaamnPp~~gGr~~l~~Rf~r--~F 1448 (3245)
T 3vkg_A 1377 VVFCDEINL--PSTDK---YGTQRVITFIRQMVEKG-GFWRTSDHTWIKLDKIQFVGACNPPTDAGRVQLTHRFLR--HA 1448 (3245)
T ss_dssp EEEETTTTC--CCCCT---TSCCHHHHHHHHHHHHS-EEEETTTTEEEEESSEEEEEEECCTTSTTCCCCCHHHHT--TC
T ss_pred EEEecccCC--CCccc---cccccHHHHHHHHHHcC-CeEECCCCeEEEecCeEEEEEcCCCCCCCCccCCHHHHh--hc
Confidence 999999984 22221 22334455566665331 11 112457899999987 369999999 99
Q ss_pred eeEeccCCCCHHHHHHHHHHHHHh
Q 035561 618 DRIFNLQKPTQSEREKILRIAAQE 641 (979)
Q Consensus 618 d~~I~~~~Pd~eeR~~IL~~~l~~ 641 (979)
. .+.++.|+.++...|+..++..
T Consensus 1449 ~-vi~i~~ps~esL~~If~til~~ 1471 (3245)
T 3vkg_A 1449 P-ILLVDFPSTSSLTQIYGTFNRA 1471 (3245)
T ss_dssp C-EEECCCCCHHHHHHHHHHHHHH
T ss_pred e-EEEeCCCCHHHHHHHHHHHHHH
Confidence 5 5899999999999998876653
No 107
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=98.16 E-value=1e-06 Score=91.97 Aligned_cols=33 Identities=18% Similarity=0.294 Sum_probs=27.5
Q ss_pred CCCCCceeEecCCCCCChHHHHHHHHHHcCCCE
Q 035561 484 GARAPRGVLIVGERGTGKTSLALAIAAEARVPV 516 (979)
Q Consensus 484 G~~~P~gVLL~GPPGTGKTtLArAlA~elg~~~ 516 (979)
+.+..+++|+|||||||||++|.++|+.++-.+
T Consensus 54 ~iPkkn~ili~GPPGtGKTt~a~ala~~l~g~i 86 (212)
T 1tue_A 54 GTPKKNCLVFCGPANTGKSYFGMSFIHFIQGAV 86 (212)
T ss_dssp TCTTCSEEEEESCGGGCHHHHHHHHHHHHTCEE
T ss_pred cCCcccEEEEECCCCCCHHHHHHHHHHHhCCCe
Confidence 344456899999999999999999999986543
No 108
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=98.01 E-value=1.5e-05 Score=109.20 Aligned_cols=127 Identities=17% Similarity=0.183 Sum_probs=90.8
Q ss_pred ceeEecCCCCCChHHHHHHHHHHcCCCEEEeechhhhhhhhcccchhhHHHHHHHHHhcCCeEEEEcCcccccccccccc
Q 035561 489 RGVLIVGERGTGKTSLALAIAAEARVPVVNVEAQELEAGLWVGQSASNVRELFQTARDLAPVIIFVEDFDLFAGVRGQFI 568 (979)
Q Consensus 489 ~gVLL~GPPGTGKTtLArAlA~elg~~~i~Is~sdL~~~~~vG~~~~~Ir~lF~~A~~~aP~ILfIDEIDaL~~~r~~~~ 568 (979)
.|..+.||+|||||.+++.+|+.+|.+++.++|++-.. ...+..+|.-+.. .++..++||++.+-.
T Consensus 605 ~gg~~~GPaGtGKTet~k~La~~lgr~~~vfnC~~~~d-------~~~~g~i~~G~~~-~GaW~cfDEfNrl~~------ 670 (3245)
T 3vkg_A 605 MGGNPFGPAGTGKTETVKALGSQLGRFVLVFCCDEGFD-------LQAMSRIFVGLCQ-CGAWGCFDEFNRLEE------ 670 (3245)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHTTCCEEEEECSSCCC-------HHHHHHHHHHHHH-HTCEEEEETTTSSCH------
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHhCCeEEEEeCCCCCC-------HHHHHHHHhhHhh-cCcEEEehhhhcCCH------
Confidence 46789999999999999999999999999999987542 2344556666654 478899999987621
Q ss_pred CCCchhhHHHHHHHHhh----h---------c-c--cccCCeEEEEecccc----hhhchhhhhcCCceeeEeccCCCCH
Q 035561 569 HTKQQDHESFINQLLVE----L---------D-G--FEKQDGVVLMATTRN----IKQIDEALQRPGRMDRIFNLQKPTQ 628 (979)
Q Consensus 569 ~~~~~~~~~iln~LL~~----L---------D-g--~~~~~~ViVIATTN~----pe~LDpALlRpgRFd~~I~~~~Pd~ 628 (979)
+.-.++.+.+.. + + | +.-+....|++|.|. ...||++|+. || +.|.+..||.
T Consensus 671 -----~vLSvv~~qi~~I~~a~~~~~~~~~~~~G~~i~l~~~~~vfiTmNpgY~gr~eLP~nLk~--lF-r~v~m~~Pd~ 742 (3245)
T 3vkg_A 671 -----RILSAVSQQIQTIQVALKENSKEVELLGGKNISLHQDMGIFVTMNPGYAGRSNLPDNLKK--LF-RSMAMIKPDR 742 (3245)
T ss_dssp -----HHHHHHHHHHHHHHHHHHHTCSEECCC---CEECCTTCEEEECBCCCGGGCCCSCHHHHT--TE-EEEECCSCCH
T ss_pred -----HHHHHHHHHHHHHHHHHHcCCCeEEecCCCEEeecCCeEEEEEeCCCccCcccChHHHHh--hc-EEEEEeCCCH
Confidence 122222222211 1 1 1 122345778889884 4589999999 88 6799999999
Q ss_pred HHHHHHHHH
Q 035561 629 SEREKILRI 637 (979)
Q Consensus 629 eeR~~IL~~ 637 (979)
+...+|+-.
T Consensus 743 ~~i~ei~L~ 751 (3245)
T 3vkg_A 743 EMIAQVMLY 751 (3245)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 998888643
No 109
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=97.98 E-value=3e-05 Score=78.63 Aligned_cols=28 Identities=32% Similarity=0.513 Sum_probs=24.3
Q ss_pred eeEecCCCCCChHHHHHHHHHHcCCCEE
Q 035561 490 GVLIVGERGTGKTSLALAIAAEARVPVV 517 (979)
Q Consensus 490 gVLL~GPPGTGKTtLArAlA~elg~~~i 517 (979)
.+.|.||+|+|||||++.+++.+++.+.
T Consensus 2 ~i~l~G~nGsGKTTLl~~l~g~l~i~~~ 29 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLVKKIVERLGKRAI 29 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHGGGEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCcCC
Confidence 4789999999999999999999875544
No 110
>1u0j_A DNA replication protein; AAA+ protein, P-loop atpases, helicase; HET: DNA ADP; 2.10A {Adeno-associated virus - 2} SCOP: c.37.1.20 PDB: 1s9h_A
Probab=97.88 E-value=3.3e-05 Score=83.61 Aligned_cols=27 Identities=33% Similarity=0.412 Sum_probs=24.3
Q ss_pred CceeEecCCCCCChHHHHHHHHHHcCC
Q 035561 488 PRGVLIVGERGTGKTSLALAIAAEARV 514 (979)
Q Consensus 488 P~gVLL~GPPGTGKTtLArAlA~elg~ 514 (979)
..+++||||||||||++|+++|+..+.
T Consensus 104 ~n~~~l~GppgtGKt~~a~ala~~~~l 130 (267)
T 1u0j_A 104 RNTIWLFGPATTGKTNIAEAIAHTVPF 130 (267)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHSSC
T ss_pred CcEEEEECCCCCCHHHHHHHHHhhhcc
Confidence 468999999999999999999998654
No 111
>1z6t_A APAF-1, apoptotic protease activating factor 1; caspase activation, ADP, nucleotide binding, CARD, apoptosis; HET: ADP; 2.21A {Homo sapiens}
Probab=97.80 E-value=0.00065 Score=80.04 Aligned_cols=180 Identities=16% Similarity=0.134 Sum_probs=98.5
Q ss_pred CCCCCcccCcHHHHHHHHHHHHhhcChhHHHhcCCCCCceeEecCCCCCChHHHHHHHHHH-------cCCCEEEeechh
Q 035561 451 PIPLKDFASVESMREEINEVVAFLQNPSAFQEMGARAPRGVLIVGERGTGKTSLALAIAAE-------ARVPVVNVEAQE 523 (979)
Q Consensus 451 ~~~f~DIvGleevke~L~eiV~~L~~p~~f~~lG~~~P~gVLL~GPPGTGKTtLArAlA~e-------lg~~~i~Is~sd 523 (979)
+.....++|-+...+.|.+.+... ...++-++|+||+|+|||+||+.++.. ....++.++.+.
T Consensus 120 P~~~~~~vGR~~~l~~L~~~L~~~----------~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~v~wv~~~~ 189 (591)
T 1z6t_A 120 PQRPVVFVTRKKLVNAIQQKLSKL----------KGEPGWVTIHGMAGCGKSVLAAEAVRDHSLLEGCFPGGVHWVSVGK 189 (591)
T ss_dssp CCCCSSCCCCHHHHHHHHHHHTTS----------TTSCEEEEEECCTTSSHHHHHHHHHCCHHHHHHHCTTCEEEEEEES
T ss_pred CCCCCeecccHHHHHHHHHHHhcc----------cCCCceEEEEcCCCCCHHHHHHHHHhchhHHHhhCCCceEEEECCC
Confidence 344577999998888777554211 123456899999999999999999743 212344444322
Q ss_pred h-----hhhh-----hcc----------cchhhHHHHHHHHHh--cCCeEEEEcCccccccccccccCCCchhhHHHHHH
Q 035561 524 L-----EAGL-----WVG----------QSASNVRELFQTARD--LAPVIIFVEDFDLFAGVRGQFIHTKQQDHESFINQ 581 (979)
Q Consensus 524 L-----~~~~-----~vG----------~~~~~Ir~lF~~A~~--~aP~ILfIDEIDaL~~~r~~~~~~~~~~~~~iln~ 581 (979)
. .... ..+ .....+...+..... ..|++|+||+++.. .
T Consensus 190 ~~~~~~~~~l~~l~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~LLVLDdv~~~----------------~---- 249 (591)
T 1z6t_A 190 QDKSGLLMKLQNLCTRLDQDESFSQRLPLNIEEAKDRLRILMLRKHPRSLLILDDVWDS----------------W---- 249 (591)
T ss_dssp CCHHHHHHHHHHHHHHHCSSCCSCSSCCCSHHHHHHHHHHHHHHTCTTCEEEEEEECCH----------------H----
T ss_pred CchHHHHHHHHHHHHHhccccccccCCCCCHHHHHHHHHHHHccCCCCeEEEEeCCCCH----------------H----
Confidence 1 1000 001 111122222332222 26899999999732 0
Q ss_pred HHhhhcccccCCeEEEEecccchhhchhhhhcCCceeeEec-cCCCCHHHHHHHHHHHHHhccchhhhhhhhHHHHHHHc
Q 035561 582 LLVELDGFEKQDGVVLMATTRNIKQIDEALQRPGRMDRIFN-LQKPTQSEREKILRIAAQETMDEELIDLVDWRKVAEKT 660 (979)
Q Consensus 582 LL~~LDg~~~~~~ViVIATTN~pe~LDpALlRpgRFd~~I~-~~~Pd~eeR~~IL~~~l~~~~~~~l~~dvdL~~LA~~T 660 (979)
.+ +.+ ..+..||.||+....... . . +.. ..+. ++..+.++-.+++...+... ..........|++.|
T Consensus 250 ~l---~~l--~~~~~ilvTsR~~~~~~~-~-~-~~~-~~v~~l~~L~~~ea~~L~~~~~~~~---~~~~~~~~~~i~~~~ 317 (591)
T 1z6t_A 250 VL---KAF--DSQCQILLTTRDKSVTDS-V-M-GPK-YVVPVESSLGKEKGLEILSLFVNMK---KADLPEQAHSIIKEC 317 (591)
T ss_dssp HH---HTT--CSSCEEEEEESCGGGGTT-C-C-SCE-EEEECCSSCCHHHHHHHHHHHHTSC---GGGSCTHHHHHHHHH
T ss_pred HH---HHh--cCCCeEEEECCCcHHHHh-c-C-CCc-eEeecCCCCCHHHHHHHHHHHhCCC---cccccHHHHHHHHHh
Confidence 11 222 234466667776443221 1 1 221 2222 24789999999998877542 111123467899999
Q ss_pred CCCCHHHHHHHHH
Q 035561 661 ALLRPIELKLVPV 673 (979)
Q Consensus 661 ~GfsgaDL~~Lv~ 673 (979)
.|. |.-|..+..
T Consensus 318 ~G~-PLal~~~a~ 329 (591)
T 1z6t_A 318 KGS-PLVVSLIGA 329 (591)
T ss_dssp TTC-HHHHHHHHH
T ss_pred CCC-cHHHHHHHH
Confidence 884 455555543
No 112
>1jr3_D DNA polymerase III, delta subunit; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1jqj_C* 1xxh_A* 1xxi_A* 3glf_A* 3glg_A* 3glh_A* 3gli_A*
Probab=97.78 E-value=9e-05 Score=81.70 Aligned_cols=147 Identities=11% Similarity=-0.000 Sum_probs=96.6
Q ss_pred CCCceeEecCCCCCChHHHHHHHHHHc---CC-CEEEeechhhhhhhhcccchhhHHHHHHHHHh----cCCeEEEEcCc
Q 035561 486 RAPRGVLIVGERGTGKTSLALAIAAEA---RV-PVVNVEAQELEAGLWVGQSASNVRELFQTARD----LAPVIIFVEDF 557 (979)
Q Consensus 486 ~~P~gVLL~GPPGTGKTtLArAlA~el---g~-~~i~Is~sdL~~~~~vG~~~~~Ir~lF~~A~~----~aP~ILfIDEI 557 (979)
+.+..+|||||+|+||++.++++++.+ +. ++..+. + .+ ...++++.+.+.. ....|++|||+
T Consensus 16 ~~~~~yl~~G~e~~~~~~~~~~l~~~~~~~~~~~~~~~~---~-----~~--~~~~~~l~~~~~~~plf~~~kvvii~~~ 85 (343)
T 1jr3_D 16 GLRAAYLLLGNDPLLLQESQDAVRQVAAAQGFEEHHTFS---I-----DP--NTDWNAIFSLCQAMSLFASRQTLLLLLP 85 (343)
T ss_dssp CCCSEEEEEESCHHHHHHHHHHHHHHHHHHTCCEEEEEE---C-----CT--TCCHHHHHHHHHHHHHCCSCEEEEEECC
T ss_pred CCCcEEEEECCcHHHHHHHHHHHHHHHHhCCCCeeEEEE---e-----cC--CCCHHHHHHHhcCcCCccCCeEEEEECC
Confidence 345679999999999999999998865 22 211111 1 11 2446666666643 23689999999
Q ss_pred cc-cccccccccCCCchhhHHHHHHHHhhhcccccCCeEEEEecccc-----hhhchhhhhcCCceeeEeccCCCCHHHH
Q 035561 558 DL-FAGVRGQFIHTKQQDHESFINQLLVELDGFEKQDGVVLMATTRN-----IKQIDEALQRPGRMDRIFNLQKPTQSER 631 (979)
Q Consensus 558 Da-L~~~r~~~~~~~~~~~~~iln~LL~~LDg~~~~~~ViVIATTN~-----pe~LDpALlRpgRFd~~I~~~~Pd~eeR 631 (979)
|. +. ....+.|+..++.... +.++|++|++. ...+.+++.+.| ..+.+.+|+.++.
T Consensus 86 ~~kl~--------------~~~~~aLl~~le~p~~-~~~~il~~~~~~~~~~~~k~~~~i~sr~---~~~~~~~l~~~~l 147 (343)
T 1jr3_D 86 ENGPN--------------AAINEQLLTLTGLLHD-DLLLIVRGNKLSKAQENAAWFTALANRS---VQVTCQTPEQAQL 147 (343)
T ss_dssp SSCCC--------------TTHHHHHHHHHTTCBT-TEEEEEEESCCCTTTTTSHHHHHHTTTC---EEEEECCCCTTHH
T ss_pred CCCCC--------------hHHHHHHHHHHhcCCC-CeEEEEEcCCCChhhHhhHHHHHHHhCc---eEEEeeCCCHHHH
Confidence 87 52 1234556666665432 34555555442 346888888844 6889999999999
Q ss_pred HHHHHHHHHhccchhhhhhhhHHHHHHHcCC
Q 035561 632 EKILRIAAQETMDEELIDLVDWRKVAEKTAL 662 (979)
Q Consensus 632 ~~IL~~~l~~~~~~~l~~dvdL~~LA~~T~G 662 (979)
...++..++... ...+...+..|++.+.|
T Consensus 148 ~~~l~~~~~~~g--~~i~~~a~~~l~~~~~g 176 (343)
T 1jr3_D 148 PRWVAARAKQLN--LELDDAANQVLCYCYEG 176 (343)
T ss_dssp HHHHHHHHHHTT--CEECHHHHHHHHHSSTT
T ss_pred HHHHHHHHHHcC--CCCCHHHHHHHHHHhch
Confidence 999998887653 12344456777877766
No 113
>2dzn_B 26S protease regulatory subunit 6B homolog; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} PDB: 2dzo_B
Probab=97.78 E-value=3e-06 Score=75.47 Aligned_cols=52 Identities=17% Similarity=0.107 Sum_probs=33.3
Q ss_pred HHHHHHHHHHHHhccchhhhhhhhHHHHHHHcCCCCHHHHHHHHHHHhhhhhccC
Q 035561 629 SEREKILRIAAQETMDEELIDLVDWRKVAEKTALLRPIELKLVPVALEGSAFRSK 683 (979)
Q Consensus 629 eeR~~IL~~~l~~~~~~~l~~dvdL~~LA~~T~GfsgaDL~~Lv~aa~~aa~r~~ 683 (979)
++|.+||+.|+++. +..+++|+..||+.|+||||+||.++|+.+...++++.
T Consensus 1 ~~R~~Il~~~l~~~---~~~~~vdl~~lA~~t~G~SGADi~~l~~eAa~~ai~~~ 52 (82)
T 2dzn_B 1 MERRLIFGTIASKM---SLAPEADLDSLIIRNDSLSGAVIAAIMQEAGLRAVRKN 52 (82)
T ss_dssp -------------C---EECTTCCSTTTTTSSCCCCHHHHHHHHHHHHHHHHHTT
T ss_pred CHHHHHHHHHHcCC---CCCCcCCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhc
Confidence 47999999999875 44578999999999999999999999998877777653
No 114
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=97.73 E-value=3.9e-05 Score=78.15 Aligned_cols=40 Identities=25% Similarity=0.253 Sum_probs=33.1
Q ss_pred CCCCCceeEecCCCCCChHHHHHHHHHHcCCCEEEeechh
Q 035561 484 GARAPRGVLIVGERGTGKTSLALAIAAEARVPVVNVEAQE 523 (979)
Q Consensus 484 G~~~P~gVLL~GPPGTGKTtLArAlA~elg~~~i~Is~sd 523 (979)
|++...-++|+||||+|||++++.+|...+.++++++...
T Consensus 16 gi~~G~~~~i~G~~GsGKTtl~~~l~~~~~~~v~~i~~~~ 55 (220)
T 2cvh_A 16 GFAPGVLTQVYGPYASGKTTLALQTGLLSGKKVAYVDTEG 55 (220)
T ss_dssp SBCTTSEEEEECSTTSSHHHHHHHHHHHHCSEEEEEESSC
T ss_pred CCcCCEEEEEECCCCCCHHHHHHHHHHHcCCcEEEEECCC
Confidence 4666677899999999999999999986677788877654
No 115
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=97.65 E-value=5.1e-05 Score=78.51 Aligned_cols=79 Identities=13% Similarity=0.140 Sum_probs=50.3
Q ss_pred CCCCCceeEecCCCCCChHHHHHHHHHH--c-------CCCEEEeechhhh-hh----h--hccc---------------
Q 035561 484 GARAPRGVLIVGERGTGKTSLALAIAAE--A-------RVPVVNVEAQELE-AG----L--WVGQ--------------- 532 (979)
Q Consensus 484 G~~~P~gVLL~GPPGTGKTtLArAlA~e--l-------g~~~i~Is~sdL~-~~----~--~vG~--------------- 532 (979)
|++...-++|+||||+|||++++.+|.. . +...+++++.+.. .. . ..|.
T Consensus 20 gi~~G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~g~~~~~~~~i~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~ 99 (243)
T 1n0w_A 20 GIETGSITEMFGEFRTGKTQICHTLAVTCQLPIDRGGGEGKAMYIDTEGTFRPERLLAVAERYGLSGSDVLDNVAYARAF 99 (243)
T ss_dssp SEETTSEEEEECCTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSSCCCHHHHHHHHHHTTCCHHHHHHTEEEEECC
T ss_pred CCcCCeEEEEECCCCCcHHHHHHHHHHHHhCchhcCCCCCeEEEEECCCCcCHHHHHHHHHHcCCCHHHHhhCeEEEecC
Confidence 4566677999999999999999999995 2 4567777765410 00 0 0110
Q ss_pred chhh----HHHHHHHHHhcCCeEEEEcCcccccc
Q 035561 533 SASN----VRELFQTARDLAPVIIFVEDFDLFAG 562 (979)
Q Consensus 533 ~~~~----Ir~lF~~A~~~aP~ILfIDEIDaL~~ 562 (979)
.... +..+...+....|.+|+||++..+..
T Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~lliiD~~~~~~~ 133 (243)
T 1n0w_A 100 NTDHQTQLLYQASAMMVESRYALLIVDSATALYR 133 (243)
T ss_dssp SHHHHHHHHHHHHHHHHHSCEEEEEEETSSGGGC
T ss_pred CHHHHHHHHHHHHHHHhcCCceEEEEeCchHHHH
Confidence 1111 22233344456799999999988754
No 116
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=97.58 E-value=9.5e-05 Score=83.15 Aligned_cols=117 Identities=21% Similarity=0.201 Sum_probs=66.6
Q ss_pred CCCCCceeEecCCCCCChHHHHHHHHHHc---CCCEEEeechhhhhhh---hccc--------chhhHHHHHHH----HH
Q 035561 484 GARAPRGVLIVGERGTGKTSLALAIAAEA---RVPVVNVEAQELEAGL---WVGQ--------SASNVRELFQT----AR 545 (979)
Q Consensus 484 G~~~P~gVLL~GPPGTGKTtLArAlA~el---g~~~i~Is~sdL~~~~---~vG~--------~~~~Ir~lF~~----A~ 545 (979)
|++...-++|+||||||||+|+..+|..+ +.++++++........ ..|. ....+.+++.. .+
T Consensus 57 Gi~~G~i~~I~GppGsGKSTLal~la~~~~~~gg~VlyId~E~s~~~~ra~rlgv~~~~l~i~~~~~~e~~l~~~~~l~~ 136 (356)
T 3hr8_A 57 GYPRGRIVEIFGQESSGKTTLALHAIAEAQKMGGVAAFIDAEHALDPVYAKNLGVDLKSLLISQPDHGEQALEIVDELVR 136 (356)
T ss_dssp SEETTEEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSCCCCHHHHHHHTCCGGGCEEECCSSHHHHHHHHHHHHH
T ss_pred CccCCcEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEecccccchHHHHHcCCchhhhhhhhccCHHHHHHHHHHHhh
Confidence 45556678999999999999999999875 5677788765421100 0010 01112222222 23
Q ss_pred hcCCeEEEEcCccccccc-cccccCCCch--hhHHHHHHHHhhhcccccCCeEEEEec
Q 035561 546 DLAPVIIFVEDFDLFAGV-RGQFIHTKQQ--DHESFINQLLVELDGFEKQDGVVLMAT 600 (979)
Q Consensus 546 ~~aP~ILfIDEIDaL~~~-r~~~~~~~~~--~~~~iln~LL~~LDg~~~~~~ViVIAT 600 (979)
...|.+++||.+..+.+. .-....+..+ ...+.+.+++..|..+....++.||.+
T Consensus 137 ~~~~dlvVIDSi~~l~~~~el~g~~G~~q~~~qar~la~~L~~L~~lak~~~~tVI~i 194 (356)
T 3hr8_A 137 SGVVDLIVVDSVAALVPRAEIEGAMGDMQVGLQARLMSQALRKIAGSVNKSKAVVIFT 194 (356)
T ss_dssp TSCCSEEEEECTTTCCCHHHHTTCCCSSCSSHHHHHHHHHHHHHHHHHHTSSCEEEEE
T ss_pred hcCCCeEEehHhhhhcChhhhcccchhhHHHHHHHHHHHHHHHHHHHHHhcCCEEEEE
Confidence 467899999999988752 1111011111 224556666666665544444444444
No 117
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=97.57 E-value=0.00023 Score=82.17 Aligned_cols=122 Identities=16% Similarity=0.116 Sum_probs=83.8
Q ss_pred CeEEEEcCccccccccccccCCCchhhHHHHHHHHhhhcccccCCeEEEEec---------cc---chhhchhhhhcCCc
Q 035561 549 PVIIFVEDFDLFAGVRGQFIHTKQQDHESFINQLLVELDGFEKQDGVVLMAT---------TR---NIKQIDEALQRPGR 616 (979)
Q Consensus 549 P~ILfIDEIDaL~~~r~~~~~~~~~~~~~iln~LL~~LDg~~~~~~ViVIAT---------TN---~pe~LDpALlRpgR 616 (979)
|.|+||||+|.+ .....+.|+..|+.... .++|++| |+ .+..|+|.+++ |
T Consensus 296 ~~VliIDEa~~l--------------~~~a~~aLlk~lEe~~~--~~~il~tn~~~~~i~~~~~~~~~~~l~~~i~s--R 357 (456)
T 2c9o_A 296 PGVLFVDEVHML--------------DIECFTYLHRALESSIA--PIVIFASNRGNCVIRGTEDITSPHGIPLDLLD--R 357 (456)
T ss_dssp ECEEEEESGGGC--------------BHHHHHHHHHHTTSTTC--CEEEEEECCSEEECBTTSSCEEETTCCHHHHT--T
T ss_pred ceEEEEechhhc--------------CHHHHHHHHHHhhccCC--CEEEEecCCccccccccccccccccCChhHHh--h
Confidence 579999999988 24567888888886433 3666666 44 27789999999 8
Q ss_pred eeeEeccCCCCHHHHHHHHHHHHHhccchhhhhhhhHHHHHHHc-CCCCHHHHHHHHHHHhhhhh--ccCCCChHHHhh
Q 035561 617 MDRIFNLQKPTQSEREKILRIAAQETMDEELIDLVDWRKVAEKT-ALLRPIELKLVPVALEGSAF--RSKFLDTDELMS 692 (979)
Q Consensus 617 Fd~~I~~~~Pd~eeR~~IL~~~l~~~~~~~l~~dvdL~~LA~~T-~GfsgaDL~~Lv~aa~~aa~--r~~~~s~~ei~~ 692 (979)
|.. +.|++|+.++..+||+..++... ...++..+..+++.+ .| ++.....+++.+...+. .+..++.+++..
T Consensus 358 ~~~-~~~~~~~~~e~~~iL~~~~~~~~--~~~~~~~~~~i~~~a~~g-~~r~a~~ll~~a~~~A~~~~~~~v~~~~v~~ 432 (456)
T 2c9o_A 358 VMI-IRTMLYTPQEMKQIIKIRAQTEG--INISEEALNHLGEIGTKT-TLRYSVQLLTPANLLAKINGKDSIEKEHVEE 432 (456)
T ss_dssp EEE-EECCCCCHHHHHHHHHHHHHHHT--CCBCHHHHHHHHHHHHHS-CHHHHHHTHHHHHHHHHHTTCSSBCHHHHHH
T ss_pred cce-eeCCCCCHHHHHHHHHHHHHHhC--CCCCHHHHHHHHHHccCC-CHHHHHHHHHHHHHHHhhcCCCccCHHHHHH
Confidence 876 69999999999999998876432 123344567777777 56 66665566555443333 233456555544
No 118
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=97.53 E-value=0.00013 Score=74.48 Aligned_cols=38 Identities=32% Similarity=0.424 Sum_probs=29.4
Q ss_pred CCCCCceeEecCCCCCChHHHHHHHHHHc---CCCEEEeec
Q 035561 484 GARAPRGVLIVGERGTGKTSLALAIAAEA---RVPVVNVEA 521 (979)
Q Consensus 484 G~~~P~gVLL~GPPGTGKTtLArAlA~el---g~~~i~Is~ 521 (979)
|++....++|+||||+|||++++.++..+ +.+++.++.
T Consensus 19 gi~~G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~v~~~~~ 59 (235)
T 2w0m_A 19 GIPQGFFIALTGEPGTGKTIFSLHFIAKGLRDGDPCIYVTT 59 (235)
T ss_dssp SEETTCEEEEECSTTSSHHHHHHHHHHHHHHHTCCEEEEES
T ss_pred CCcCCCEEEEEcCCCCCHHHHHHHHHHHHHHCCCeEEEEEc
Confidence 45556678999999999999999999754 456665553
No 119
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=97.52 E-value=7.8e-05 Score=83.50 Aligned_cols=79 Identities=22% Similarity=0.215 Sum_probs=50.6
Q ss_pred CCCCCceeEecCCCCCChHHHHHHHHHHc---CCCEEEeechhhhhhh---hcccch--------hhHHHHHH----HHH
Q 035561 484 GARAPRGVLIVGERGTGKTSLALAIAAEA---RVPVVNVEAQELEAGL---WVGQSA--------SNVRELFQ----TAR 545 (979)
Q Consensus 484 G~~~P~gVLL~GPPGTGKTtLArAlA~el---g~~~i~Is~sdL~~~~---~vG~~~--------~~Ir~lF~----~A~ 545 (979)
|++...-++|+||||+|||+||..+|..+ +.++++++...-.... ..|... ..+.++++ .++
T Consensus 57 Gl~~G~iv~I~G~pGsGKTtLal~la~~~~~~g~~vlyi~~E~~~~~~~a~~lG~~~~~l~i~~~~~~e~~l~~~~~l~~ 136 (349)
T 2zr9_A 57 GLPRGRVIEIYGPESSGKTTVALHAVANAQAAGGIAAFIDAEHALDPEYAKKLGVDTDSLLVSQPDTGEQALEIADMLVR 136 (349)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSCCCCHHHHHHTTCCGGGCEEECCSSHHHHHHHHHHHHT
T ss_pred CccCCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEECCCCcCHHHHHHcCCCHHHeEEecCCCHHHHHHHHHHHHh
Confidence 45566679999999999999999998765 5677777764321110 111110 11222222 233
Q ss_pred hcCCeEEEEcCcccccc
Q 035561 546 DLAPVIIFVEDFDLFAG 562 (979)
Q Consensus 546 ~~aP~ILfIDEIDaL~~ 562 (979)
...|.+|+||++..+.+
T Consensus 137 ~~~~~lIVIDsl~~l~~ 153 (349)
T 2zr9_A 137 SGALDIIVIDSVAALVP 153 (349)
T ss_dssp TTCCSEEEEECGGGCCC
T ss_pred cCCCCEEEEcChHhhcc
Confidence 55799999999999874
No 120
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=97.51 E-value=0.00018 Score=81.16 Aligned_cols=117 Identities=21% Similarity=0.198 Sum_probs=65.6
Q ss_pred CCCCCceeEecCCCCCChHHHHHHHHHHc---CCCEEEeechhhhhhh---hccc-----------chhhHHHHHHH-HH
Q 035561 484 GARAPRGVLIVGERGTGKTSLALAIAAEA---RVPVVNVEAQELEAGL---WVGQ-----------SASNVRELFQT-AR 545 (979)
Q Consensus 484 G~~~P~gVLL~GPPGTGKTtLArAlA~el---g~~~i~Is~sdL~~~~---~vG~-----------~~~~Ir~lF~~-A~ 545 (979)
|++....++|+||||+|||++|..+|..+ +.++++++...-.... ..|. +...+....+. .+
T Consensus 70 Gl~~G~li~I~G~pGsGKTtlal~la~~~~~~g~~vlyi~~E~s~~~~~a~~~g~d~~~l~i~~~~~~e~~l~~l~~l~~ 149 (366)
T 1xp8_A 70 GIPRGRITEIYGPESGGKTTLALAIVAQAQKAGGTCAFIDAEHALDPVYARALGVNTDELLVSQPDNGEQALEIMELLVR 149 (366)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSCCCCHHHHHHTTCCGGGCEEECCSSHHHHHHHHHHHHT
T ss_pred CccCCcEEEEEcCCCCChHHHHHHHHHHHHHCCCeEEEEECCCChhHHHHHHcCCCHHHceeecCCcHHHHHHHHHHHHh
Confidence 56666779999999999999999998765 6678888765321110 0111 11222223332 23
Q ss_pred hcCCeEEEEcCccccccccccccC-CCc--hhhHHHHHHHHhhhcccccCCeEEEEec
Q 035561 546 DLAPVIIFVEDFDLFAGVRGQFIH-TKQ--QDHESFINQLLVELDGFEKQDGVVLMAT 600 (979)
Q Consensus 546 ~~aP~ILfIDEIDaL~~~r~~~~~-~~~--~~~~~iln~LL~~LDg~~~~~~ViVIAT 600 (979)
...+++|+||.+..+.+...-... +.. ....+.+.+++..|..+-...++.||++
T Consensus 150 ~~~~~lVVIDsl~~l~~~~e~~g~~gd~~~~~~~r~~~~~lr~L~~~a~~~~~~VI~~ 207 (366)
T 1xp8_A 150 SGAIDVVVVDSVAALTPRAEIEGDMGDSLPGLQARLMSQALRKLTAILSKTGTAAIFI 207 (366)
T ss_dssp TTCCSEEEEECTTTCCCSTTC--------CCHHHHHHHHHHHHHHHHHTTTCCEEEEE
T ss_pred cCCCCEEEEeChHHhccccccccccccchhhHHHHHHHHHHHHHHHHHHHcCCEEEEE
Confidence 456899999999998742211000 000 0122445555555544434445555555
No 121
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=97.44 E-value=0.00017 Score=95.82 Aligned_cols=119 Identities=20% Similarity=0.216 Sum_probs=77.4
Q ss_pred CCCCCceeEecCCCCCChHHHHHHHHHHc---CCCEEEeechhhhhhh---hcc--------cchhhHHHHHHHHHh---
Q 035561 484 GARAPRGVLIVGERGTGKTSLALAIAAEA---RVPVVNVEAQELEAGL---WVG--------QSASNVRELFQTARD--- 546 (979)
Q Consensus 484 G~~~P~gVLL~GPPGTGKTtLArAlA~el---g~~~i~Is~sdL~~~~---~vG--------~~~~~Ir~lF~~A~~--- 546 (979)
|+.++..++|+|+||+|||+||..+|..+ +.+++++++....... ..| ..+..+..++..++.
T Consensus 728 Gl~~G~lilIaG~PG~GKTtLalqlA~~~a~~g~~VlyiS~Ees~~ql~A~rlG~~~~~l~i~~~~~i~~i~~~~r~l~~ 807 (2050)
T 3cmu_A 728 GLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTGEQALEICDALAR 807 (2050)
T ss_dssp SEETTSEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEECTTSCCCHHHHHHTTCCTTTCEEECCSSHHHHHHHHHHHHH
T ss_pred CcCCCcEEEEEcCCCCCHHHHHHHHHHHHHhcCCcEEEEECCCcHHHHHHHHcCCCccceEEecCCCHHHHHHHHHHHhh
Confidence 46777889999999999999999999877 4579999886543111 112 123345666666654
Q ss_pred -cCCeEEEEcCcccccc-ccccc-cCCCc-hhhHHHHHHHHhhhcccccCCeEEEEeccc
Q 035561 547 -LAPVIIFVEDFDLFAG-VRGQF-IHTKQ-QDHESFINQLLVELDGFEKQDGVVLMATTR 602 (979)
Q Consensus 547 -~aP~ILfIDEIDaL~~-~r~~~-~~~~~-~~~~~iln~LL~~LDg~~~~~~ViVIATTN 602 (979)
..|++|+||.++.+.+ ..... .+..+ .-..+.+++++..|..+....++.||++..
T Consensus 808 ~~~~~LVIIDsLq~i~~~~~~~~~~Gs~~q~La~Reis~ilr~Lk~lAke~~v~VI~l~Q 867 (2050)
T 3cmu_A 808 SGAVDVIVVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKQSNTLLIFINQ 867 (2050)
T ss_dssp HTCCSEEEESCGGGCCCHHHHHSCTTCCCTTHHHHHHHHHHHHHHHHHHTTTCEEEEEEC
T ss_pred ccCCCEEEEcchhhhcccccccCCCCchhhHHHHHHHHHHHHHHHHHHHHhCCEEEEecc
Confidence 6799999999999975 22110 01111 122445777777777765555666665543
No 122
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=97.41 E-value=0.0011 Score=83.85 Aligned_cols=181 Identities=14% Similarity=0.102 Sum_probs=103.2
Q ss_pred CCCCCCCcccCcHHHHHHHHHHHHhhcChhHHHhcCCCCCceeEecCCCCCChHHHHHHHHHHc---C----CCEEEeec
Q 035561 449 NPPIPLKDFASVESMREEINEVVAFLQNPSAFQEMGARAPRGVLIVGERGTGKTSLALAIAAEA---R----VPVVNVEA 521 (979)
Q Consensus 449 ~~~~~f~DIvGleevke~L~eiV~~L~~p~~f~~lG~~~P~gVLL~GPPGTGKTtLArAlA~el---g----~~~i~Is~ 521 (979)
..+.....++|.++..+.|.+.+... ...++-+.|+|++|+|||+||+.++... . ..++.++.
T Consensus 118 ~~p~~~~~~vgR~~~~~~l~~~l~~~----------~~~~~~v~i~G~gG~GKTtLa~~~~~~~~~~~~~~~~~~~~v~~ 187 (1249)
T 3sfz_A 118 GVPQRPVIFVTRKKLVHAIQQKLWKL----------NGEPGWVTIYGMAGCGKSVLAAEAVRDHSLLEGCFSGGVHWVSI 187 (1249)
T ss_dssp TCCCCCSSCCCCHHHHHHHHHHHHTT----------TTSCEEEEEECSTTSSHHHHHHHHTCCHHHHTTTSTTCEEEEEC
T ss_pred CCCCCCceeccHHHHHHHHHHHHhhc----------cCCCCEEEEEeCCCCCHHHHHHHHhcChhHHHhhCCCeEEEEEE
Confidence 34556678999998887777554211 1234568899999999999999988752 1 22334443
Q ss_pred hhh-----hh------hhh---------cccchhhHHHHHHHHHhc--CCeEEEEcCccccccccccccCCCchhhHHHH
Q 035561 522 QEL-----EA------GLW---------VGQSASNVRELFQTARDL--APVIIFVEDFDLFAGVRGQFIHTKQQDHESFI 579 (979)
Q Consensus 522 sdL-----~~------~~~---------vG~~~~~Ir~lF~~A~~~--aP~ILfIDEIDaL~~~r~~~~~~~~~~~~~il 579 (979)
+.. .. ... .......+.+.+...... .+.+|+||+++...
T Consensus 188 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~LlvlDd~~~~~------------------ 249 (1249)
T 3sfz_A 188 GKQDKSGLLMKLQNLCMRLDQEESFSQRLPLNIEEAKDRLRVLMLRKHPRSLLILDDVWDPW------------------ 249 (1249)
T ss_dssp CSCCHHHHHHHHHHHHHHHTTTCTTCSSCCSSHHHHHHHHHHHTSSSSCSCEEEEESCCCHH------------------
T ss_pred CCcCchHHHHHHHHHHHHhhhhcccccCCCCCHHHHHHHHHHHHhccCCCEEEEEecCCCHH------------------
Confidence 221 00 000 011122333333333333 38999999997420
Q ss_pred HHHHhhhcccccCCeEEEEecccchhhchhhhhcCCceeeEeccCC-CCHHHHHHHHHHHHHhccchhhhhhhhHHHHHH
Q 035561 580 NQLLVELDGFEKQDGVVLMATTRNIKQIDEALQRPGRMDRIFNLQK-PTQSEREKILRIAAQETMDEELIDLVDWRKVAE 658 (979)
Q Consensus 580 n~LL~~LDg~~~~~~ViVIATTN~pe~LDpALlRpgRFd~~I~~~~-Pd~eeR~~IL~~~l~~~~~~~l~~dvdL~~LA~ 658 (979)
.++.+ ..+..||.||+.+...... . .-...+.++. ++.++-.++|..+..... ........+|++
T Consensus 250 -----~~~~~--~~~~~ilvTtR~~~~~~~~-~---~~~~~~~~~~~l~~~~a~~l~~~~~~~~~---~~~~~~~~~i~~ 315 (1249)
T 3sfz_A 250 -----VLKAF--DNQCQILLTTRDKSVTDSV-M---GPKHVVPVESGLGREKGLEILSLFVNMKK---EDLPAEAHSIIK 315 (1249)
T ss_dssp -----HHTTT--CSSCEEEEEESSTTTTTTC-C---SCBCCEECCSSCCHHHHHHHHHHHHTSCS---TTCCTHHHHHHH
T ss_pred -----HHHhh--cCCCEEEEEcCCHHHHHhh-c---CCceEEEecCCCCHHHHHHHHHHhhCCCh---hhCcHHHHHHHH
Confidence 12222 2344677788765433211 1 1235677775 899999999987764321 111223678899
Q ss_pred HcCCCCHHHHHHHH
Q 035561 659 KTALLRPIELKLVP 672 (979)
Q Consensus 659 ~T~GfsgaDL~~Lv 672 (979)
.+.|. |-.|+.+.
T Consensus 316 ~~~gl-PLal~~~~ 328 (1249)
T 3sfz_A 316 ECKGS-PLVVSLIG 328 (1249)
T ss_dssp HTTTC-HHHHHHHH
T ss_pred HhCCC-HHHHHHHH
Confidence 99885 44555543
No 123
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=97.39 E-value=0.00012 Score=72.47 Aligned_cols=38 Identities=16% Similarity=0.295 Sum_probs=33.2
Q ss_pred CceeEecCCCCCChHHHHHHHHHHcCCCEEEeechhhh
Q 035561 488 PRGVLIVGERGTGKTSLALAIAAEARVPVVNVEAQELE 525 (979)
Q Consensus 488 P~gVLL~GPPGTGKTtLArAlA~elg~~~i~Is~sdL~ 525 (979)
|.-|+|+|+|||||||++++++..++.+++.++..++.
T Consensus 3 ~~~i~l~G~~GsGKST~a~~La~~l~~~~~~~~~D~~~ 40 (178)
T 1qhx_A 3 TRMIILNGGSSAGKSGIVRCLQSVLPEPWLAFGVDSLI 40 (178)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHSSSCEEEEEHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHhcCCCeEEeccchHh
Confidence 45699999999999999999999999999887776553
No 124
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=97.36 E-value=0.00022 Score=80.11 Aligned_cols=79 Identities=24% Similarity=0.285 Sum_probs=52.7
Q ss_pred CCCCCceeEecCCCCCChHHHHHHHHHHc---CCCEEEeechhhhhhh---hccc-----------chhhHHHHHHHH-H
Q 035561 484 GARAPRGVLIVGERGTGKTSLALAIAAEA---RVPVVNVEAQELEAGL---WVGQ-----------SASNVRELFQTA-R 545 (979)
Q Consensus 484 G~~~P~gVLL~GPPGTGKTtLArAlA~el---g~~~i~Is~sdL~~~~---~vG~-----------~~~~Ir~lF~~A-~ 545 (979)
|++....++|+||||+|||++|..+|.++ +.++++++...-.... ..|. +...+.++.+.. +
T Consensus 59 Gl~~G~ii~I~G~pGsGKTtLal~la~~~~~~g~~vlyid~E~s~~~~~a~~~g~~~~~l~i~~~~~~e~~~~~~~~l~~ 138 (356)
T 1u94_A 59 GLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTGEQALEICDALAR 138 (356)
T ss_dssp SEETTSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEESSCCCCHHHHHHTTCCGGGCEEECCSSHHHHHHHHHHHHH
T ss_pred CccCCeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEeCCCCccHHHHHHcCCChhheeeeCCCCHHHHHHHHHHHHh
Confidence 46666789999999999999999998764 6788888874321100 0111 122333333332 3
Q ss_pred hcCCeEEEEcCcccccc
Q 035561 546 DLAPVIIFVEDFDLFAG 562 (979)
Q Consensus 546 ~~aP~ILfIDEIDaL~~ 562 (979)
...+.+|+||.+..+.+
T Consensus 139 ~~~~~lVVIDsl~~l~~ 155 (356)
T 1u94_A 139 SGAVDVIVVDSVAALTP 155 (356)
T ss_dssp HTCCSEEEEECGGGCCC
T ss_pred ccCCCEEEEcCHHHhcc
Confidence 45789999999999874
No 125
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=97.34 E-value=0.00014 Score=80.25 Aligned_cols=116 Identities=16% Similarity=0.146 Sum_probs=65.4
Q ss_pred CCCCCceeEecCCCCCChHHHHHHHHHHc---------CCCEEEeechhhh-hhh------hccc---------------
Q 035561 484 GARAPRGVLIVGERGTGKTSLALAIAAEA---------RVPVVNVEAQELE-AGL------WVGQ--------------- 532 (979)
Q Consensus 484 G~~~P~gVLL~GPPGTGKTtLArAlA~el---------g~~~i~Is~sdL~-~~~------~vG~--------------- 532 (979)
|++...-++|+||||+|||++|..+|..+ +.++++++...-+ ... ..|.
T Consensus 103 Gl~~G~i~~i~G~~GsGKT~la~~la~~~~~~~~~gg~~~~vlyi~~e~~~~~~~l~~~~~~~g~~~~~~~~~l~~~~~~ 182 (324)
T 2z43_A 103 GIETRTMTEFFGEFGSGKTQLCHQLSVNVQLPPEKGGLSGKAVYIDTEGTFRWERIENMAKALGLDIDNVMNNIYYIRAI 182 (324)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSSCCCHHHHHHHHHHTTCCHHHHHHTEEEEECC
T ss_pred CCCCCcEEEEECCCCCCHhHHHHHHHHHHhcccccCCCCCeEEEEECCCCCCHHHHHHHHHHhCCCHHHHhccEEEEeCC
Confidence 55666779999999999999999999875 4567787765420 000 0010
Q ss_pred chh----hHHHHHHHHHh-cCCeEEEEcCccccccccccccCCCchhhHHHHHHHHhhhcccccCCeEEEEec
Q 035561 533 SAS----NVRELFQTARD-LAPVIIFVEDFDLFAGVRGQFIHTKQQDHESFINQLLVELDGFEKQDGVVLMAT 600 (979)
Q Consensus 533 ~~~----~Ir~lF~~A~~-~aP~ILfIDEIDaL~~~r~~~~~~~~~~~~~iln~LL~~LDg~~~~~~ViVIAT 600 (979)
+.. .+..+....+. ..+.+|+||.+..+....... .+......+.+.+++..|..+....++.||.+
T Consensus 183 ~~~~~~~~l~~l~~~~~~~~~~~lvVIDsl~~l~~~~~~~-~g~~~~r~~~~~~~l~~L~~la~~~~~~Vi~~ 254 (324)
T 2z43_A 183 NTDHQIAIVDDLQELVSKDPSIKLIVVDSVTSHFRAEYPG-RENLAVRQQKLNKHLHQLTRLAEVYDIAVIIT 254 (324)
T ss_dssp SHHHHHHHHHHHHHHHHHCTTEEEEEETTTTHHHHHHSCT-TTSHHHHHHHHHHHHHHHHHHHHHHTCEEEEE
T ss_pred CHHHHHHHHHHHHHHHHhccCCCEEEEeCcHHHhhhhhcC-cccHHHHHHHHHHHHHHHHHHHHHhCCEEEEE
Confidence 011 12233334444 678999999999886431110 01111222345555555554433334455544
No 126
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=97.31 E-value=0.00043 Score=71.73 Aligned_cols=38 Identities=34% Similarity=0.392 Sum_probs=28.1
Q ss_pred CCCCCceeEecCCCCCChHHHHHHHH--HH--cCCCEEEeec
Q 035561 484 GARAPRGVLIVGERGTGKTSLALAIA--AE--ARVPVVNVEA 521 (979)
Q Consensus 484 G~~~P~gVLL~GPPGTGKTtLArAlA--~e--lg~~~i~Is~ 521 (979)
|++...-+.|.||+|+|||||++.++ .. .+...+.++.
T Consensus 26 gi~~G~~~~l~GpnGsGKSTLl~~i~~~~~~~~~~~~~~~~~ 67 (251)
T 2ehv_A 26 GFPEGTTVLLTGGTGTGKTTFAAQFIYKGAEEYGEPGVFVTL 67 (251)
T ss_dssp SEETTCEEEEECCTTSSHHHHHHHHHHHHHHHHCCCEEEEES
T ss_pred CCCCCcEEEEEeCCCCCHHHHHHHHHHHHHHhCCCeEEEEEc
Confidence 45556679999999999999999998 33 3445555543
No 127
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=97.31 E-value=0.00014 Score=74.42 Aligned_cols=29 Identities=34% Similarity=0.438 Sum_probs=24.7
Q ss_pred CCCCCceeEecCCCCCChHHHHHHHHHHc
Q 035561 484 GARAPRGVLIVGERGTGKTSLALAIAAEA 512 (979)
Q Consensus 484 G~~~P~gVLL~GPPGTGKTtLArAlA~el 512 (979)
|++...-+.|.||+|+|||||++.++...
T Consensus 21 gi~~G~~~~l~G~nGsGKSTll~~l~g~~ 49 (231)
T 4a74_A 21 GIETQAITEVFGEFGSGKTQLAHTLAVMV 49 (231)
T ss_dssp SEESSEEEEEEESTTSSHHHHHHHHHHHT
T ss_pred CCCCCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 45555678999999999999999999854
No 128
>3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain, PIN-tower interface, coupling hydrolysis to DNA unwinding, ssDNA; 3.30A {Enterobacteria phage T4}
Probab=97.26 E-value=0.00075 Score=77.82 Aligned_cols=128 Identities=14% Similarity=0.253 Sum_probs=68.9
Q ss_pred cCCCCCCCCcccCcHHHHHHHHHHHHhhcChhHHHhcCCCCCceeEecCCCCCChHHHHHHHHHHc---CC-CEEEeech
Q 035561 447 VKNPPIPLKDFASVESMREEINEVVAFLQNPSAFQEMGARAPRGVLIVGERGTGKTSLALAIAAEA---RV-PVVNVEAQ 522 (979)
Q Consensus 447 v~~~~~~f~DIvGleevke~L~eiV~~L~~p~~f~~lG~~~P~gVLL~GPPGTGKTtLArAlA~el---g~-~~i~Is~s 522 (979)
.+.++.+|+++- ++.++.+..+...+... ...++|.|+||||||+++.+++..+ +. .++.+..+
T Consensus 16 ~~~~p~~~~~Ln--~~Q~~av~~~~~~i~~~----------~~~~li~G~aGTGKT~ll~~~~~~l~~~~~~~il~~a~T 83 (459)
T 3upu_A 16 PRGSHMTFDDLT--EGQKNAFNIVMKAIKEK----------KHHVTINGPAGTGATTLTKFIIEALISTGETGIILAAPT 83 (459)
T ss_dssp -----CCSSCCC--HHHHHHHHHHHHHHHSS----------SCEEEEECCTTSCHHHHHHHHHHHHHHTTCCCEEEEESS
T ss_pred cccCCCccccCC--HHHHHHHHHHHHHHhcC----------CCEEEEEeCCCCCHHHHHHHHHHHHHhcCCceEEEecCc
Confidence 356778898874 44555555555444331 1269999999999999999999876 33 44444332
Q ss_pred hhhh---hhhcccchhhHHHHHHHHH----------------hcCCeEEEEcCccccccccccccCCCchhhHHHHHHHH
Q 035561 523 ELEA---GLWVGQSASNVRELFQTAR----------------DLAPVIIFVEDFDLFAGVRGQFIHTKQQDHESFINQLL 583 (979)
Q Consensus 523 dL~~---~~~vG~~~~~Ir~lF~~A~----------------~~aP~ILfIDEIDaL~~~r~~~~~~~~~~~~~iln~LL 583 (979)
.-.. ....+.....+..++.... .....+|+|||+..+. ...+..|+
T Consensus 84 ~~Aa~~l~~~~~~~~~T~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiiDE~~~~~--------------~~~~~~l~ 149 (459)
T 3upu_A 84 HAAKKILSKLSGKEASTIHSILKINPVTYEENVLFEQKEVPDLAKCRVLICDEVSMYD--------------RKLFKILL 149 (459)
T ss_dssp HHHHHHHHHHHSSCEEEHHHHHTEEEEECSSCEEEEECSCCCCSSCSEEEESCGGGCC--------------HHHHHHHH
T ss_pred HHHHHHHHhhhccchhhHHHHhccCcccccccchhcccccccccCCCEEEEECchhCC--------------HHHHHHHH
Confidence 2110 0112333344444443110 0134799999997551 23444555
Q ss_pred hhhcccccCCeEEEEecccc
Q 035561 584 VELDGFEKQDGVVLMATTRN 603 (979)
Q Consensus 584 ~~LDg~~~~~~ViVIATTN~ 603 (979)
..+. ....+++++=.+.
T Consensus 150 ~~~~---~~~~~~~vGD~~Q 166 (459)
T 3upu_A 150 STIP---PWCTIIGIGDNKQ 166 (459)
T ss_dssp HHSC---TTCEEEEEECTTS
T ss_pred Hhcc---CCCEEEEECCHHH
Confidence 4443 3455667664443
No 129
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=97.23 E-value=0.00037 Score=77.58 Aligned_cols=117 Identities=13% Similarity=0.145 Sum_probs=63.9
Q ss_pred CCCCCceeEecCCCCCChHHHHHHHHHHc---------CCCEEEeechhhhh-h----h--hccc---------------
Q 035561 484 GARAPRGVLIVGERGTGKTSLALAIAAEA---------RVPVVNVEAQELEA-G----L--WVGQ--------------- 532 (979)
Q Consensus 484 G~~~P~gVLL~GPPGTGKTtLArAlA~el---------g~~~i~Is~sdL~~-~----~--~vG~--------------- 532 (979)
|++...-++|+||||+|||++|..+|... +.++++++...-+. . . ..|.
T Consensus 118 Gl~~G~i~~I~G~~GsGKTtla~~la~~~~~~~~~gg~~~~vlyi~~E~~~~~~~l~~~~~~~g~~~~~~l~~l~~~~~~ 197 (343)
T 1v5w_A 118 GIESMAITEAFGEFRTGKTQLSHTLCVTAQLPGAGGYPGGKIIFIDTENTFRPDRLRDIADRFNVDHDAVLDNVLYARAY 197 (343)
T ss_dssp SBCSSEEEEEECCTTCTHHHHHHHHHHHTTSCBTTTBCCCEEEEEESSSCCCHHHHHHHHHHTTCCHHHHHHTEEEEECC
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCeEEEEECCCCCCHHHHHHHHHHcCCCHHHHHhceeEeecC
Confidence 45555668999999999999999999873 45677777654210 0 0 0010
Q ss_pred chhh----HHHHHHHHHh--cCCeEEEEcCccccccccccccCCCchhhHHHHHHHHhhhcccccCCeEEEEecc
Q 035561 533 SASN----VRELFQTARD--LAPVIIFVEDFDLFAGVRGQFIHTKQQDHESFINQLLVELDGFEKQDGVVLMATT 601 (979)
Q Consensus 533 ~~~~----Ir~lF~~A~~--~aP~ILfIDEIDaL~~~r~~~~~~~~~~~~~iln~LL~~LDg~~~~~~ViVIATT 601 (979)
+... +..+...++. ..+.+|+||.+..+....-.. .+......+.+.+++..|..+....++.||.++
T Consensus 198 ~~e~~~~ll~~l~~~i~~~~~~~~lvVIDsl~~l~~~~~~~-~g~~~~r~~~l~~~l~~L~~la~~~~~~Vi~~n 271 (343)
T 1v5w_A 198 TSEHQMELLDYVAAKFHEEAGIFKLLIIDSIMALFRVDFSG-RGELAERQQKLAQMLSRLQKISEEYNVAVFVTN 271 (343)
T ss_dssp STTHHHHHHHHHHHHHHHSCSSEEEEEEETSGGGHHHHCCG-GGCHHHHHHHHHHHHHHHHHHHHHHTCEEEEEE
T ss_pred CHHHHHHHHHHHHHHHHhcCCCccEEEEechHHHHHHHhcc-cccHHHHHHHHHHHHHHHHHHHHHhCCEEEEEe
Confidence 0111 1122233444 578999999999886431100 011111122355555555444333344555443
No 130
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=97.23 E-value=0.00025 Score=72.18 Aligned_cols=68 Identities=16% Similarity=0.200 Sum_probs=38.1
Q ss_pred eeEecCCCCCChHHHHHHHHHHc---CCCEEEeechhhhhhhh--------cc-----cchhhHHHHHHHHHhcCCeEEE
Q 035561 490 GVLIVGERGTGKTSLALAIAAEA---RVPVVNVEAQELEAGLW--------VG-----QSASNVRELFQTARDLAPVIIF 553 (979)
Q Consensus 490 gVLL~GPPGTGKTtLArAlA~el---g~~~i~Is~sdL~~~~~--------vG-----~~~~~Ir~lF~~A~~~aP~ILf 553 (979)
-++++||||+||||++..++..+ +.+++.+....- ..+ .| .......++++.+. ..+.+|+
T Consensus 5 i~vi~G~~gsGKTT~ll~~~~~~~~~g~~v~~~~~~~d--~r~~~~~i~s~~g~~~~~~~~~~~~~~~~~~~-~~~dvvi 81 (184)
T 2orw_A 5 LTVITGPMYSGKTTELLSFVEIYKLGKKKVAVFKPKID--SRYHSTMIVSHSGNGVEAHVIERPEEMRKYIE-EDTRGVF 81 (184)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHHHTTCEEEEEEEC-------CCCEECC----CEECEEESSGGGGGGGCC-TTEEEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEeeccc--cccCcccEEecCCCceeeEEECCHHHHHHHhc-CCCCEEE
Confidence 47899999999999986666543 555554432200 010 01 01112223333332 2468999
Q ss_pred EcCcccc
Q 035561 554 VEDFDLF 560 (979)
Q Consensus 554 IDEIDaL 560 (979)
|||+..+
T Consensus 82 IDE~Q~~ 88 (184)
T 2orw_A 82 IDEVQFF 88 (184)
T ss_dssp ECCGGGS
T ss_pred EECcccC
Confidence 9999865
No 131
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=97.22 E-value=0.00017 Score=71.93 Aligned_cols=33 Identities=21% Similarity=0.365 Sum_probs=29.6
Q ss_pred CceeEecCCCCCChHHHHHHHHHHcCCCEEEee
Q 035561 488 PRGVLIVGERGTGKTSLALAIAAEARVPVVNVE 520 (979)
Q Consensus 488 P~gVLL~GPPGTGKTtLArAlA~elg~~~i~Is 520 (979)
++.|+|+|||||||||+++.+|..++.+++..+
T Consensus 5 ~~~i~l~G~~GsGKst~a~~La~~l~~~~i~~d 37 (185)
T 3trf_A 5 LTNIYLIGLMGAGKTSVGSQLAKLTKRILYDSD 37 (185)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHHCCCEEEHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHhCCCEEECh
Confidence 467999999999999999999999999987654
No 132
>2a5y_B CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis elegans} SCOP: a.4.5.80 a.77.1.3 c.37.1.20 PDB: 3lqq_A* 3lqr_A*
Probab=97.19 E-value=0.0033 Score=74.00 Aligned_cols=168 Identities=11% Similarity=0.024 Sum_probs=91.6
Q ss_pred cCcHHHHHHHHHHHHhhcChhHHHhcCCCCCceeEecCCCCCChHHHHHHHHH----HcCCCE---EEeechhh------
Q 035561 458 ASVESMREEINEVVAFLQNPSAFQEMGARAPRGVLIVGERGTGKTSLALAIAA----EARVPV---VNVEAQEL------ 524 (979)
Q Consensus 458 vGleevke~L~eiV~~L~~p~~f~~lG~~~P~gVLL~GPPGTGKTtLArAlA~----elg~~~---i~Is~sdL------ 524 (979)
+|.++.++.|.+.+..- +...++.|.|+|++|+|||+||+.+++ .....| +.++.+.-
T Consensus 131 ~GR~~~~~~l~~~L~~~---------~~~~~~vv~I~G~gGvGKTtLA~~v~~~~~~~~~~~F~~~~wv~vs~~~~~~~~ 201 (549)
T 2a5y_B 131 YIREYHVDRVIKKLDEM---------CDLDSFFLFLHGRAGSGKSVIASQALSKSDQLIGINYDSIVWLKDSGTAPKSTF 201 (549)
T ss_dssp CCCHHHHHHHHHHHHHH---------TTSSSEEEEEECSTTSSHHHHHHHHHHHCSSTBTTTBSEEEEEECCCCSTTHHH
T ss_pred CCchHHHHHHHHHHhcc---------cCCCceEEEEEcCCCCCHHHHHHHHHHhhhHHHhccCCcEEEEEECCCCCCCHH
Confidence 49998777776655221 122346788999999999999999997 232221 22232221
Q ss_pred --hhhh--hccc-------------chhhHHHHHHHHHhcC-CeEEEEcCccccccccccccCCCchhhHHHHHHHHhhh
Q 035561 525 --EAGL--WVGQ-------------SASNVRELFQTARDLA-PVIIFVEDFDLFAGVRGQFIHTKQQDHESFINQLLVEL 586 (979)
Q Consensus 525 --~~~~--~vG~-------------~~~~Ir~lF~~A~~~a-P~ILfIDEIDaL~~~r~~~~~~~~~~~~~iln~LL~~L 586 (979)
.... ..+. ....+...+...-... +++|+||+++.. .+. .+.
T Consensus 202 ~~~~~il~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~L~~~kr~LlVLDdv~~~---------------~~~--~~~--- 261 (549)
T 2a5y_B 202 DLFTDILLMLKSEDDLLNFPSVEHVTSVVLKRMICNALIDRPNTLFVFDDVVQE---------------ETI--RWA--- 261 (549)
T ss_dssp HHHHHHHHHHTTTSCCTTCCCCTTCCHHHHHHHHHHHHTTSTTEEEEEEEECCH---------------HHH--HHH---
T ss_pred HHHHHHHHHHhcCcccccccccccccHHHHHHHHHHHHcCCCcEEEEEECCCCc---------------hhh--ccc---
Confidence 0000 0010 0112333344443444 899999999742 111 111
Q ss_pred cccccCCeEEEEecccchhhchhhhhcCCceeeEeccCCCCHHHHHHHHHHHHHhccchhhhhhhhHHHHHHHcCCC
Q 035561 587 DGFEKQDGVVLMATTRNIKQIDEALQRPGRMDRIFNLQKPTQSEREKILRIAAQETMDEELIDLVDWRKVAEKTALL 663 (979)
Q Consensus 587 Dg~~~~~~ViVIATTN~pe~LDpALlRpgRFd~~I~~~~Pd~eeR~~IL~~~l~~~~~~~l~~dvdL~~LA~~T~Gf 663 (979)
+ ..+..||.||+...... .. +..+..+.++..+.++-.+++..+...... ..........+++.+.|.
T Consensus 262 -~---~~gs~ilvTTR~~~v~~-~~---~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~-~~~~~~~~~~I~~~c~Gl 329 (549)
T 2a5y_B 262 -Q---ELRLRCLVTTRDVEISN-AA---SQTCEFIEVTSLEIDECYDFLEAYGMPMPV-GEKEEDVLNKTIELSSGN 329 (549)
T ss_dssp -H---HTTCEEEEEESBGGGGG-GC---CSCEEEEECCCCCHHHHHHHHHHTSCCCC---CHHHHHHHHHHHHHTTC
T ss_pred -c---cCCCEEEEEcCCHHHHH-Hc---CCCCeEEECCCCCHHHHHHHHHHHhcCCCC-chhHHHHHHHHHHHhCCC
Confidence 1 13446777777644322 11 113357899999999999999887432210 011111346677778774
No 133
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=97.16 E-value=0.00019 Score=71.62 Aligned_cols=35 Identities=31% Similarity=0.596 Sum_probs=30.3
Q ss_pred CCCCceeEecCCCCCChHHHHHHHHHHcCCCEEEe
Q 035561 485 ARAPRGVLIVGERGTGKTSLALAIAAEARVPVVNV 519 (979)
Q Consensus 485 ~~~P~gVLL~GPPGTGKTtLArAlA~elg~~~i~I 519 (979)
.+.|.-|+|.|+|||||||+++.++..++.+++..
T Consensus 2 ~~~~~~I~l~G~~GsGKST~~~~L~~~l~~~~i~~ 36 (193)
T 2rhm_A 2 MQTPALIIVTGHPATGKTTLSQALATGLRLPLLSK 36 (193)
T ss_dssp CSCCEEEEEEESTTSSHHHHHHHHHHHHTCCEEEH
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHcCCeEecH
Confidence 44567799999999999999999999999887653
No 134
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=97.15 E-value=0.00042 Score=79.10 Aligned_cols=119 Identities=14% Similarity=0.126 Sum_probs=63.0
Q ss_pred CCCCCceeEecCCCCCChHHHHHHHHHHc---------CCCEEEeechhhhhh-------hhcccc--------------
Q 035561 484 GARAPRGVLIVGERGTGKTSLALAIAAEA---------RVPVVNVEAQELEAG-------LWVGQS-------------- 533 (979)
Q Consensus 484 G~~~P~gVLL~GPPGTGKTtLArAlA~el---------g~~~i~Is~sdL~~~-------~~vG~~-------------- 533 (979)
|++...-++|+||||||||+|++.+|... +...++++..+.... ...|..
T Consensus 174 GI~~Gei~~I~G~sGsGKTTLl~~la~~~~~p~~~Gg~~~~viyid~E~~~~~~rl~~~a~~~gl~~~~vleni~~~~~~ 253 (400)
T 3lda_A 174 GVETGSITELFGEFRTGKSQLCHTLAVTCQIPLDIGGGEGKCLYIDTEGTFRPVRLVSIAQRFGLDPDDALNNVAYARAY 253 (400)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSSCCCHHHHHHHHHHTTCCHHHHHHTEEEEECC
T ss_pred CcCCCcEEEEEcCCCCChHHHHHHHHHHhccCcccCCCCCcEEEEeCCCccCHHHHHHHHHHcCCChHhHhhcEEEeccC
Confidence 55556678999999999999999877543 234777776542100 001100
Q ss_pred -----hhhHHHHHHHHHhcCCeEEEEcCccccccccccccCCCchhhHHHHHHHHhhhcccccCCeEEEEecccc
Q 035561 534 -----ASNVRELFQTARDLAPVIIFVEDFDLFAGVRGQFIHTKQQDHESFINQLLVELDGFEKQDGVVLMATTRN 603 (979)
Q Consensus 534 -----~~~Ir~lF~~A~~~aP~ILfIDEIDaL~~~r~~~~~~~~~~~~~iln~LL~~LDg~~~~~~ViVIATTN~ 603 (979)
...+..+...+....|.+|+||++-.+......+ .++-....+.+..++..|..+....++.||.++..
T Consensus 254 ~~~~~~~~l~~~~~~l~~~~~~llVIDs~t~~~~~~~sg-~g~l~~Rq~~l~~il~~L~~lake~gitVIlv~Hv 327 (400)
T 3lda_A 254 NADHQLRLLDAAAQMMSESRFSLIVVDSVMALYRTDFSG-RGELSARQMHLAKFMRALQRLADQFGVAVVVTNQV 327 (400)
T ss_dssp SHHHHHHHHHHHHHHHHHSCEEEEEEETGGGGCC-------CCHHHHHHHHHHHHHHHHHHHHHHCCEEEEEEEC
T ss_pred ChHHHHHHHHHHHHHHHhcCCceEEecchhhhCchhhcC-ccchHHHHHHHHHHHHHHHHHHHHcCCEEEEEEee
Confidence 0112222233344579999999998876432110 01112223344555555554433334555555543
No 135
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=97.15 E-value=0.00023 Score=72.42 Aligned_cols=35 Identities=31% Similarity=0.545 Sum_probs=29.9
Q ss_pred CCCceeEecCCCCCChHHHHHHHHHHcCCCEEEee
Q 035561 486 RAPRGVLIVGERGTGKTSLALAIAAEARVPVVNVE 520 (979)
Q Consensus 486 ~~P~gVLL~GPPGTGKTtLArAlA~elg~~~i~Is 520 (979)
..+..++|.|||||||||+++++|+.++.+++..+
T Consensus 23 ~~~~~i~l~G~~GsGKsTl~~~La~~l~~~~i~~d 57 (199)
T 3vaa_A 23 NAMVRIFLTGYMGAGKTTLGKAFARKLNVPFIDLD 57 (199)
T ss_dssp -CCCEEEEECCTTSCHHHHHHHHHHHHTCCEEEHH
T ss_pred CCCCEEEEEcCCCCCHHHHHHHHHHHcCCCEEcch
Confidence 34567999999999999999999999999987543
No 136
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=97.13 E-value=0.00052 Score=76.20 Aligned_cols=37 Identities=27% Similarity=0.570 Sum_probs=32.4
Q ss_pred CceeEecCCCCCChHHHHHHHHHHcCCCEEEeechhh
Q 035561 488 PRGVLIVGERGTGKTSLALAIAAEARVPVVNVEAQEL 524 (979)
Q Consensus 488 P~gVLL~GPPGTGKTtLArAlA~elg~~~i~Is~sdL 524 (979)
+..++|+||+|||||++++.+|+.++.+++.++...+
T Consensus 5 ~~~i~i~GptGsGKTtla~~La~~l~~~iis~Ds~qv 41 (323)
T 3crm_A 5 PPAIFLMGPTAAGKTDLAMALADALPCELISVDSALI 41 (323)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHHSCEEEEEECTTTT
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHcCCcEEeccchhh
Confidence 4579999999999999999999999988888876544
No 137
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=97.08 E-value=0.00058 Score=74.19 Aligned_cols=60 Identities=25% Similarity=0.411 Sum_probs=43.0
Q ss_pred HHHHHHHHHHHHhhcChhHHHhcCCCCCceeEecCCCCCChHHHHHHHHHHcCCCEEEeechhh
Q 035561 461 ESMREEINEVVAFLQNPSAFQEMGARAPRGVLIVGERGTGKTSLALAIAAEARVPVVNVEAQEL 524 (979)
Q Consensus 461 eevke~L~eiV~~L~~p~~f~~lG~~~P~gVLL~GPPGTGKTtLArAlA~elg~~~i~Is~sdL 524 (979)
++..+.+.+++..+... ......|.-++|.|||||||||+++.++.+++...+.+++..+
T Consensus 10 ~~~~~~~~~~~~~~l~~----~~~~~~~~livl~G~sGsGKSTla~~L~~~~~~~~~~Is~D~~ 69 (287)
T 1gvn_B 10 KQFENRLNDNLEELIQG----KKAVESPTAFLLGGQPGSGKTSLRSAIFEETQGNVIVIDNDTF 69 (287)
T ss_dssp HHHHHHHHHHHHHHHTT----CCCCSSCEEEEEECCTTSCTHHHHHHHHHHTTTCCEEECTHHH
T ss_pred HHHHHHHHHHHHHHhcc----ccCCCCCeEEEEECCCCCCHHHHHHHHHHHhCCCeEEEechHh
Confidence 55666666666553221 1233456789999999999999999999998656677887555
No 138
>3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4}
Probab=97.08 E-value=0.00078 Score=74.70 Aligned_cols=116 Identities=9% Similarity=0.161 Sum_probs=61.7
Q ss_pred CCCCCceeEecCCCCCChHHHHHHHHHHc-----CCCEEEeechhhhhhh---hcccc--------hhhHHHH-H---HH
Q 035561 484 GARAPRGVLIVGERGTGKTSLALAIAAEA-----RVPVVNVEAQELEAGL---WVGQS--------ASNVREL-F---QT 543 (979)
Q Consensus 484 G~~~P~gVLL~GPPGTGKTtLArAlA~el-----g~~~i~Is~sdL~~~~---~vG~~--------~~~Ir~l-F---~~ 543 (979)
|++.. -++++||||||||+|+-.++.++ +..++++++..-.... -.|.. .....++ + +.
T Consensus 25 Gl~~G-iteI~G~pGsGKTtL~Lq~~~~~~~~g~g~~vlyId~E~s~~~~ra~~lGvd~d~llv~~~~~~E~~~l~i~~~ 103 (333)
T 3io5_A 25 GMQSG-LLILAGPSKSFKSNFGLTMVSSYMRQYPDAVCLFYDSEFGITPAYLRSMGVDPERVIHTPVQSLEQLRIDMVNQ 103 (333)
T ss_dssp CBCSE-EEEEEESSSSSHHHHHHHHHHHHHHHCTTCEEEEEESSCCCCHHHHHHTTCCGGGEEEEECSBHHHHHHHHHHH
T ss_pred CCcCC-eEEEECCCCCCHHHHHHHHHHHHHhcCCCceEEEEeccchhhHHHHHHhCCCHHHeEEEcCCCHHHHHHHHHHH
Confidence 34433 47899999999999988776654 5678888875321100 01111 1122222 2 22
Q ss_pred ---HHhcCCeEEEEcCccccccccc-cccCCC----chhhHHHHHHHHhhhcccccCCeEEEEec
Q 035561 544 ---ARDLAPVIIFVEDFDLFAGVRG-QFIHTK----QQDHESFINQLLVELDGFEKQDGVVLMAT 600 (979)
Q Consensus 544 ---A~~~aP~ILfIDEIDaL~~~r~-~~~~~~----~~~~~~iln~LL~~LDg~~~~~~ViVIAT 600 (979)
.+..+|.+|+||-|.++.+... .+..+. +....+.+++.|..|.++-+..++.+|.+
T Consensus 104 l~~i~~~~~~lvVIDSI~aL~~~~eieg~~gd~~~gsv~qaR~~s~~LrkL~~~ak~~~i~vi~t 168 (333)
T 3io5_A 104 LDAIERGEKVVVFIDSLGNLASKKETEDALNEKVVSDMTRAKTMKSLFRIVTPYFSTKNIPCIAI 168 (333)
T ss_dssp HHTCCTTCCEEEEEECSTTCBCC--------------CTHHHHHHHHHHHHHHHHHHTTCEEEEE
T ss_pred HHHhhccCceEEEEecccccccchhccCccccccccHHHHHHHHHHHHHHHHHHHHHhCCEEEEE
Confidence 2455799999999999975321 100010 01234556666655544433344444443
No 139
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=97.07 E-value=0.00045 Score=77.24 Aligned_cols=40 Identities=28% Similarity=0.405 Sum_probs=31.4
Q ss_pred CCCCCceeEecCCCCCChHHHHHHHHHHcC---------CCEEEeechh
Q 035561 484 GARAPRGVLIVGERGTGKTSLALAIAAEAR---------VPVVNVEAQE 523 (979)
Q Consensus 484 G~~~P~gVLL~GPPGTGKTtLArAlA~elg---------~~~i~Is~sd 523 (979)
|++...-+.|+||||||||+|++.+|.... -.+++++..+
T Consensus 127 gi~~G~i~~I~G~~GsGKTTL~~~l~~~~~~~~~~Gg~~G~vi~i~~e~ 175 (349)
T 1pzn_A 127 GIETQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTEN 175 (349)
T ss_dssp SEESSEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTSCSCEEEEEESSS
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHHHhccchhcCCCCCeEEEEeCCC
Confidence 555566789999999999999999999872 3457777643
No 140
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=97.03 E-value=0.00055 Score=72.56 Aligned_cols=60 Identities=17% Similarity=0.329 Sum_probs=42.1
Q ss_pred HHHHHHHHHHHHhhcChhHHHhcCCCCCceeEecCCCCCChHHHHHHHHHHcCCCEEEeechhh
Q 035561 461 ESMREEINEVVAFLQNPSAFQEMGARAPRGVLIVGERGTGKTSLALAIAAEARVPVVNVEAQEL 524 (979)
Q Consensus 461 eevke~L~eiV~~L~~p~~f~~lG~~~P~gVLL~GPPGTGKTtLArAlA~elg~~~i~Is~sdL 524 (979)
++.+..+.+++..+.... .....|..++|.|+|||||||+++.++..++.+.+.+++..+
T Consensus 9 ~~~~~~~~~~~~~~~~~~----~~~~~~~~i~l~G~~GsGKSTla~~L~~~l~~~~~~~~~D~~ 68 (253)
T 2p5t_B 9 SEFKHALARNLRSLTRGK----KSSKQPIAILLGGQSGAGKTTIHRIKQKEFQGNIVIIDGDSF 68 (253)
T ss_dssp HHHHHHHHHHHHHHHTTC----CCCSSCEEEEEESCGGGTTHHHHHHHHHHTTTCCEEECGGGG
T ss_pred HHHHHHHHHHHHHHHccC----CcccCCeEEEEECCCCCCHHHHHHHHHHhcCCCcEEEecHHH
Confidence 344455555544432221 134456789999999999999999999999877777777665
No 141
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=96.96 E-value=0.00044 Score=67.44 Aligned_cols=31 Identities=16% Similarity=0.306 Sum_probs=28.0
Q ss_pred eeEecCCCCCChHHHHHHHHHHcCCCEEEee
Q 035561 490 GVLIVGERGTGKTSLALAIAAEARVPVVNVE 520 (979)
Q Consensus 490 gVLL~GPPGTGKTtLArAlA~elg~~~i~Is 520 (979)
-|+|.|||||||||+++.+++.++.+++..+
T Consensus 3 ~i~l~G~~GsGKsT~~~~L~~~l~~~~i~~d 33 (173)
T 3kb2_A 3 LIILEGPDCCFKSTVAAKLSKELKYPIIKGS 33 (173)
T ss_dssp EEEEECSSSSSHHHHHHHHHHHHCCCEEECC
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCeeecCc
Confidence 4889999999999999999999999887655
No 142
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=96.94 E-value=0.00041 Score=69.14 Aligned_cols=31 Identities=23% Similarity=0.476 Sum_probs=27.7
Q ss_pred eeEecCCCCCChHHHHHHHHHHcCCCEEEee
Q 035561 490 GVLIVGERGTGKTSLALAIAAEARVPVVNVE 520 (979)
Q Consensus 490 gVLL~GPPGTGKTtLArAlA~elg~~~i~Is 520 (979)
.|+|+|+|||||||+|+.+|..+|.+++..+
T Consensus 4 ~I~l~G~~GsGKsT~a~~La~~lg~~~id~D 34 (184)
T 2iyv_A 4 KAVLVGLPGSGKSTIGRRLAKALGVGLLDTD 34 (184)
T ss_dssp SEEEECSTTSSHHHHHHHHHHHHTCCEEEHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHcCCCEEeCc
Confidence 4899999999999999999999999976543
No 143
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=96.94 E-value=0.00043 Score=68.07 Aligned_cols=31 Identities=26% Similarity=0.531 Sum_probs=28.4
Q ss_pred ceeEecCCCCCChHHHHHHHHHHcCCCEEEe
Q 035561 489 RGVLIVGERGTGKTSLALAIAAEARVPVVNV 519 (979)
Q Consensus 489 ~gVLL~GPPGTGKTtLArAlA~elg~~~i~I 519 (979)
.+|+|.|+|||||||+++.+|..+|.+++..
T Consensus 8 ~~i~l~G~~GsGKSTva~~La~~lg~~~id~ 38 (168)
T 1zuh_A 8 QHLVLIGFMGSGKSSLAQELGLALKLEVLDT 38 (168)
T ss_dssp CEEEEESCTTSSHHHHHHHHHHHHTCCEEEH
T ss_pred ceEEEECCCCCCHHHHHHHHHHHhCCCEEEC
Confidence 4799999999999999999999999998754
No 144
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=96.92 E-value=0.00045 Score=68.67 Aligned_cols=33 Identities=30% Similarity=0.529 Sum_probs=28.7
Q ss_pred CCceeEecCCCCCChHHHHHHHHHHcCCCEEEe
Q 035561 487 APRGVLIVGERGTGKTSLALAIAAEARVPVVNV 519 (979)
Q Consensus 487 ~P~gVLL~GPPGTGKTtLArAlA~elg~~~i~I 519 (979)
.+..|+|+|+|||||||+++.++..++.+++..
T Consensus 10 ~~~~i~i~G~~GsGKst~~~~l~~~~~~~~~~~ 42 (180)
T 3iij_A 10 LLPNILLTGTPGVGKTTLGKELASKSGLKYINV 42 (180)
T ss_dssp CCCCEEEECSTTSSHHHHHHHHHHHHCCEEEEH
T ss_pred cCCeEEEEeCCCCCHHHHHHHHHHHhCCeEEEH
Confidence 456799999999999999999999999877643
No 145
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=96.92 E-value=0.00042 Score=69.20 Aligned_cols=40 Identities=30% Similarity=0.468 Sum_probs=33.8
Q ss_pred CCCCceeEecCCCCCChHHHHHHHHHHcCCCEEEeechhh
Q 035561 485 ARAPRGVLIVGERGTGKTSLALAIAAEARVPVVNVEAQEL 524 (979)
Q Consensus 485 ~~~P~gVLL~GPPGTGKTtLArAlA~elg~~~i~Is~sdL 524 (979)
++.+.-+.|.||||+||||+++.+++..+.+.+.+++.++
T Consensus 6 i~~g~~i~l~G~~GsGKSTl~~~La~~~~~g~i~i~~d~~ 45 (191)
T 1zp6_A 6 DLGGNILLLSGHPGSGKSTIAEALANLPGVPKVHFHSDDL 45 (191)
T ss_dssp CCTTEEEEEEECTTSCHHHHHHHHHTCSSSCEEEECTTHH
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHhccCCCeEEEcccch
Confidence 4555678999999999999999999988778888877665
No 146
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=96.91 E-value=0.00043 Score=69.58 Aligned_cols=33 Identities=45% Similarity=0.537 Sum_probs=27.7
Q ss_pred CCceeEecCCCCCChHHHHHHHHHH-cCCCEEEe
Q 035561 487 APRGVLIVGERGTGKTSLALAIAAE-ARVPVVNV 519 (979)
Q Consensus 487 ~P~gVLL~GPPGTGKTtLArAlA~e-lg~~~i~I 519 (979)
.+..|+|+|+|||||||+++.+|.. +|.+++.+
T Consensus 9 ~~~~I~l~G~~GsGKSTv~~~La~~l~g~~~id~ 42 (184)
T 1y63_A 9 KGINILITGTPGTGKTSMAEMIAAELDGFQHLEV 42 (184)
T ss_dssp SSCEEEEECSTTSSHHHHHHHHHHHSTTEEEEEH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHhcCCCEEeeH
Confidence 3456999999999999999999999 68766543
No 147
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=96.89 E-value=0.00052 Score=75.19 Aligned_cols=29 Identities=21% Similarity=0.256 Sum_probs=24.6
Q ss_pred CCCCCceeEecCCCCCChHHHHHHHHHHc
Q 035561 484 GARAPRGVLIVGERGTGKTSLALAIAAEA 512 (979)
Q Consensus 484 G~~~P~gVLL~GPPGTGKTtLArAlA~el 512 (979)
|++...-++|+||||+|||++|..+|...
T Consensus 94 Gl~~g~i~~i~G~~gsGKT~la~~la~~~ 122 (322)
T 2i1q_A 94 GLESQSVTEFAGVFGSGKTQIMHQSCVNL 122 (322)
T ss_dssp SEETTEEEEEEESTTSSHHHHHHHHHHHT
T ss_pred CccCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 45656678999999999999999999763
No 148
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=96.88 E-value=0.00044 Score=68.51 Aligned_cols=29 Identities=28% Similarity=0.552 Sum_probs=26.7
Q ss_pred eeEecCCCCCChHHHHHHHHHHcCCCEEE
Q 035561 490 GVLIVGERGTGKTSLALAIAAEARVPVVN 518 (979)
Q Consensus 490 gVLL~GPPGTGKTtLArAlA~elg~~~i~ 518 (979)
.++|.|||||||||+++++|+.++.+++.
T Consensus 6 ~i~i~G~~GsGKsTla~~La~~l~~~~~d 34 (175)
T 1via_A 6 NIVFIGFMGSGKSTLARALAKDLDLVFLD 34 (175)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHHTCEEEE
T ss_pred EEEEEcCCCCCHHHHHHHHHHHcCCCEEc
Confidence 48999999999999999999999988764
No 149
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=96.86 E-value=0.0047 Score=63.68 Aligned_cols=39 Identities=28% Similarity=0.348 Sum_probs=30.1
Q ss_pred CCCCCceeEecCCCCCChHHHHHHHHHHc---CCCEEEeech
Q 035561 484 GARAPRGVLIVGERGTGKTSLALAIAAEA---RVPVVNVEAQ 522 (979)
Q Consensus 484 G~~~P~gVLL~GPPGTGKTtLArAlA~el---g~~~i~Is~s 522 (979)
|++...-++|+||||+|||+++..+|... +.++++++..
T Consensus 19 Gl~~G~~~~i~G~~GsGKTtl~~~~~~~~~~~~~~v~~~~~e 60 (247)
T 2dr3_A 19 GIPERNVVLLSGGPGTGKTIFSQQFLWNGLKMGEPGIYVALE 60 (247)
T ss_dssp SEETTCEEEEEECTTSSHHHHHHHHHHHHHHTTCCEEEEESS
T ss_pred CCCCCcEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEEcc
Confidence 55666778999999999999998887653 5667766643
No 150
>2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV}
Probab=96.86 E-value=0.0043 Score=65.64 Aligned_cols=33 Identities=27% Similarity=0.222 Sum_probs=26.7
Q ss_pred ceeEecCCCCCChHHHHHHHHHHc---CCCEEEeec
Q 035561 489 RGVLIVGERGTGKTSLALAIAAEA---RVPVVNVEA 521 (979)
Q Consensus 489 ~gVLL~GPPGTGKTtLArAlA~el---g~~~i~Is~ 521 (979)
..|++.|+||||||+++-.+|..+ |..++.++.
T Consensus 7 l~I~~~~kgGvGKTt~a~~la~~l~~~G~~V~v~d~ 42 (228)
T 2r8r_A 7 LKVFLGAAPGVGKTYAMLQAAHAQLRQGVRVMAGVV 42 (228)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHHHHHTTCCEEEEEC
T ss_pred EEEEEECCCCCcHHHHHHHHHHHHHHCCCCEEEEEe
Confidence 469999999999999999998775 666665554
No 151
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=96.85 E-value=0.00061 Score=69.06 Aligned_cols=34 Identities=26% Similarity=0.496 Sum_probs=29.2
Q ss_pred CCCceeEecCCCCCChHHHHHHHHHHcCCCEEEe
Q 035561 486 RAPRGVLIVGERGTGKTSLALAIAAEARVPVVNV 519 (979)
Q Consensus 486 ~~P~gVLL~GPPGTGKTtLArAlA~elg~~~i~I 519 (979)
..|..|+|.|+|||||||+|+.++..++.+++.+
T Consensus 18 ~~~~~I~l~G~~GsGKST~a~~La~~l~~~~i~~ 51 (201)
T 2cdn_A 18 GSHMRVLLLGPPGAGKGTQAVKLAEKLGIPQIST 51 (201)
T ss_dssp CSCCEEEEECCTTSSHHHHHHHHHHHHTCCEEEH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhCCcEEeh
Confidence 3455699999999999999999999999887654
No 152
>2iut_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- cell division, DNA translocation, KOPS, membrane; HET: DNA SAP; 2.25A {Pseudomonas aeruginosa} PDB: 2iuu_A*
Probab=96.85 E-value=0.0038 Score=74.16 Aligned_cols=74 Identities=15% Similarity=0.308 Sum_probs=53.1
Q ss_pred eEEEEcCccccccccccccCCCchhhHHHHHHHHhhhcccccCCeEEEEecccchh--hchhhhhcCCceeeEeccCCCC
Q 035561 550 VIIFVEDFDLFAGVRGQFIHTKQQDHESFINQLLVELDGFEKQDGVVLMATTRNIK--QIDEALQRPGRMDRIFNLQKPT 627 (979)
Q Consensus 550 ~ILfIDEIDaL~~~r~~~~~~~~~~~~~iln~LL~~LDg~~~~~~ViVIATTN~pe--~LDpALlRpgRFd~~I~~~~Pd 627 (979)
.+|+|||+..+.... .......+..+... ...-++.+|.+|.+|. .|+..++. -|...|.+...+
T Consensus 345 ivvVIDE~~~L~~~~-------~~~~~~~L~~Iar~----GRa~GIhLIlaTQRPs~d~I~~~Ira--n~~~RI~lrv~s 411 (574)
T 2iut_A 345 IVVVVDEFADMMMIV-------GKKVEELIARIAQK----ARAAGIHLILATQRPSVDVITGLIKA--NIPTRIAFQVSS 411 (574)
T ss_dssp EEEEESCCTTHHHHT-------CHHHHHHHHHHHHH----CTTTTEEEEEEESCCCTTTSCHHHHH--TCCEEEEECCSC
T ss_pred EEEEEeCHHHHhhhh-------hHHHHHHHHHHHHH----HhhCCeEEEEEecCcccccccHHHHh--hhccEEEEEcCC
Confidence 689999999886421 12233344444332 3456788999999987 78888887 788888899888
Q ss_pred HHHHHHHHH
Q 035561 628 QSEREKILR 636 (979)
Q Consensus 628 ~eeR~~IL~ 636 (979)
..+...||.
T Consensus 412 ~~Dsr~ILd 420 (574)
T 2iut_A 412 KIDSRTILD 420 (574)
T ss_dssp HHHHHHHHS
T ss_pred HHHHHHhcC
Confidence 888877764
No 153
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=96.83 E-value=0.00052 Score=68.20 Aligned_cols=35 Identities=29% Similarity=0.400 Sum_probs=29.3
Q ss_pred CceeEecCCCCCChHHHHHHHHHHcCCCEEEeechhh
Q 035561 488 PRGVLIVGERGTGKTSLALAIAAEARVPVVNVEAQEL 524 (979)
Q Consensus 488 P~gVLL~GPPGTGKTtLArAlA~elg~~~i~Is~sdL 524 (979)
|.-|+|.|+|||||||+|+.++..++.+++ +..++
T Consensus 3 ~~~I~l~G~~GsGKsT~a~~L~~~~~~~~i--~~d~~ 37 (196)
T 1tev_A 3 PLVVFVLGGPGAGKGTQCARIVEKYGYTHL--SAGEL 37 (196)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHCCEEE--EHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHhCCeEE--eHHHH
Confidence 556899999999999999999999998765 44444
No 154
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=96.83 E-value=0.00071 Score=66.46 Aligned_cols=35 Identities=20% Similarity=0.483 Sum_probs=28.6
Q ss_pred CceeEecCCCCCChHHHHHHHHHHcCCCEEEeechhh
Q 035561 488 PRGVLIVGERGTGKTSLALAIAAEARVPVVNVEAQEL 524 (979)
Q Consensus 488 P~gVLL~GPPGTGKTtLArAlA~elg~~~i~Is~sdL 524 (979)
+..+.|+|||||||||+++.+|+.++.+++ ++.++
T Consensus 4 ~~~i~l~G~~GsGKSTl~~~La~~l~~~~i--d~d~~ 38 (173)
T 1kag_A 4 KRNIFLVGPMGAGKSTIGRQLAQQLNMEFY--DSDQE 38 (173)
T ss_dssp CCCEEEECCTTSCHHHHHHHHHHHTTCEEE--EHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHhCCCEE--eccHH
Confidence 346999999999999999999999987655 44443
No 155
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=96.79 E-value=0.00059 Score=67.66 Aligned_cols=34 Identities=21% Similarity=0.337 Sum_probs=28.9
Q ss_pred CCCceeEecCCCCCChHHHHHHHHHHcCCCEEEe
Q 035561 486 RAPRGVLIVGERGTGKTSLALAIAAEARVPVVNV 519 (979)
Q Consensus 486 ~~P~gVLL~GPPGTGKTtLArAlA~elg~~~i~I 519 (979)
..|.-|+|.|+|||||||+++.++..++.+++..
T Consensus 4 ~~~~~I~l~G~~GsGKsT~~~~L~~~l~~~~i~~ 37 (194)
T 1qf9_A 4 SKPNVVFVLGGPGSGKGTQCANIVRDFGWVHLSA 37 (194)
T ss_dssp CCCEEEEEEESTTSSHHHHHHHHHHHHCCEEEEH
T ss_pred CcCcEEEEECCCCCCHHHHHHHHHHHhCCeEeeH
Confidence 3456799999999999999999999999766544
No 156
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=96.78 E-value=0.0017 Score=69.61 Aligned_cols=29 Identities=34% Similarity=0.362 Sum_probs=23.8
Q ss_pred CCCCCceeEecCCCCCChHHHHHHHHHHc
Q 035561 484 GARAPRGVLIVGERGTGKTSLALAIAAEA 512 (979)
Q Consensus 484 G~~~P~gVLL~GPPGTGKTtLArAlA~el 512 (979)
|++...-++|+||||+|||||++.++..+
T Consensus 26 gl~~G~i~~i~G~~GsGKTtl~~~l~~~~ 54 (279)
T 1nlf_A 26 NMVAGTVGALVSPGGAGKSMLALQLAAQI 54 (279)
T ss_dssp TEETTSEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CccCCCEEEEEcCCCCCHHHHHHHHHHHH
Confidence 34445668999999999999999998754
No 157
>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E*
Probab=96.77 E-value=0.007 Score=69.91 Aligned_cols=95 Identities=18% Similarity=0.258 Sum_probs=66.3
Q ss_pred hHHHHHHHHHhcCCeEEEEcCccccccccccccCCCchhhHHHHHHHHhhhcccc--------cCCeEEEEecc----cc
Q 035561 536 NVRELFQTARDLAPVIIFVEDFDLFAGVRGQFIHTKQQDHESFINQLLVELDGFE--------KQDGVVLMATT----RN 603 (979)
Q Consensus 536 ~Ir~lF~~A~~~aP~ILfIDEIDaL~~~r~~~~~~~~~~~~~iln~LL~~LDg~~--------~~~~ViVIATT----N~ 603 (979)
..++....|.. .+|||+||||.+++..+. .+.+-..+.+.+.||..||+-. ..+++++|+|. ++
T Consensus 240 ~~~~ai~~ae~--~~il~~DEidki~~~~~~--~~~D~s~egvq~aLL~~le~~~~~~~~~~~d~~~ilfI~~gaf~~~~ 315 (444)
T 1g41_A 240 LKQKAIDAVEQ--NGIVFIDEIDKICKKGEY--SGADVSREGVQRDLLPLVEGSTVSTKHGMVKTDHILFIASGAFQVAR 315 (444)
T ss_dssp HHHHHHHHHHH--HCEEEEETGGGGSCCSSC--SSSHHHHHHHHHHHHHHHHCCEEEETTEEEECTTCEEEEEECCSSCC
T ss_pred HHHHHHHHhcc--CCeeeHHHHHHHhhccCC--CCCCchHHHHHHHHHHHhcccccccccceecCCcEEEEeccccccCC
Confidence 34445555422 369999999999865331 1222223346678999998742 34568888886 34
Q ss_pred hhhchhhhhcCCceeeEeccCCCCHHHHHHHHH
Q 035561 604 IKQIDEALQRPGRMDRIFNLQKPTQSEREKILR 636 (979)
Q Consensus 604 pe~LDpALlRpgRFd~~I~~~~Pd~eeR~~IL~ 636 (979)
|.++.|.|++ ||+.++.++.++.++..+|+.
T Consensus 316 ~~dlipel~~--R~~i~i~l~~lt~~e~~~Il~ 346 (444)
T 1g41_A 316 PSDLIPELQG--RLPIRVELTALSAADFERILT 346 (444)
T ss_dssp GGGSCHHHHT--TCCEEEECCCCCHHHHHHHHH
T ss_pred hhhcchHHhc--ccceeeeCCCCCHHHHHHHHH
Confidence 5556678988 999999999999999999994
No 158
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=96.75 E-value=0.00088 Score=67.93 Aligned_cols=31 Identities=32% Similarity=0.657 Sum_probs=27.8
Q ss_pred CceeEecCCCCCChHHHHHHHHHHcCCCEEE
Q 035561 488 PRGVLIVGERGTGKTSLALAIAAEARVPVVN 518 (979)
Q Consensus 488 P~gVLL~GPPGTGKTtLArAlA~elg~~~i~ 518 (979)
+.-|+|.|+||+||||+++.+++.+|.+++.
T Consensus 18 ~~~I~l~G~~GsGKSTla~~L~~~lg~~~i~ 48 (202)
T 3t61_A 18 PGSIVVMGVSGSGKSSVGEAIAEACGYPFIE 48 (202)
T ss_dssp SSCEEEECSTTSCHHHHHHHHHHHHTCCEEE
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCCEEEe
Confidence 5579999999999999999999999887665
No 159
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=96.73 E-value=0.00064 Score=65.82 Aligned_cols=29 Identities=31% Similarity=0.484 Sum_probs=25.6
Q ss_pred eeEecCCCCCChHHHHHHHHHHcCCCEEEe
Q 035561 490 GVLIVGERGTGKTSLALAIAAEARVPVVNV 519 (979)
Q Consensus 490 gVLL~GPPGTGKTtLArAlA~elg~~~i~I 519 (979)
-|+|.|||||||||+|+.+ ..+|.+++.+
T Consensus 3 ~I~l~G~~GsGKsT~a~~L-~~~g~~~i~~ 31 (179)
T 3lw7_A 3 VILITGMPGSGKSEFAKLL-KERGAKVIVM 31 (179)
T ss_dssp EEEEECCTTSCHHHHHHHH-HHTTCEEEEH
T ss_pred EEEEECCCCCCHHHHHHHH-HHCCCcEEEH
Confidence 4889999999999999999 8889887654
No 160
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=96.72 E-value=0.00066 Score=67.81 Aligned_cols=34 Identities=18% Similarity=0.264 Sum_probs=28.9
Q ss_pred CCceeEecCCCCCChHHHHHHHHHHcCCCEEEee
Q 035561 487 APRGVLIVGERGTGKTSLALAIAAEARVPVVNVE 520 (979)
Q Consensus 487 ~P~gVLL~GPPGTGKTtLArAlA~elg~~~i~Is 520 (979)
.+.-|+|.|+|||||||+++.+|+.++.+++..+
T Consensus 8 ~~~~I~l~G~~GsGKsT~~~~La~~l~~~~i~~d 41 (196)
T 2c95_A 8 KTNIIFVVGGPGSGKGTQCEKIVQKYGYTHLSTG 41 (196)
T ss_dssp TSCEEEEEECTTSSHHHHHHHHHHHHCCEEEEHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHhCCeEEcHH
Confidence 3456999999999999999999999998766543
No 161
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=96.71 E-value=0.0067 Score=70.05 Aligned_cols=72 Identities=22% Similarity=0.241 Sum_probs=49.1
Q ss_pred CCceeEecCCCCCChHHHHHHHHHHc---CCCEEEeechhhhhh---------------hh----cccchhhHHHHHHHH
Q 035561 487 APRGVLIVGERGTGKTSLALAIAAEA---RVPVVNVEAQELEAG---------------LW----VGQSASNVRELFQTA 544 (979)
Q Consensus 487 ~P~gVLL~GPPGTGKTtLArAlA~el---g~~~i~Is~sdL~~~---------------~~----vG~~~~~Ir~lF~~A 544 (979)
.|.-+++.|++|+||||++..+|..+ |..+..+++..+-.. .+ .......++..+..+
T Consensus 99 ~p~vIlivG~~G~GKTTt~~kLA~~l~~~G~kVllv~~D~~R~aa~eqL~~~~~~~gvpv~~~~~~~dp~~i~~~al~~a 178 (443)
T 3dm5_A 99 KPTILLMVGIQGSGKTTTVAKLARYFQKRGYKVGVVCSDTWRPGAYHQLRQLLDRYHIEVFGNPQEKDAIKLAKEGVDYF 178 (443)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEECCCSSTHHHHHHHHHHGGGTCEEECCTTCCCHHHHHHHHHHHH
T ss_pred CCeEEEEECcCCCCHHHHHHHHHHHHHHCCCeEEEEeCCCcchhHHHHHHHHHHhcCCcEEecCCCCCHHHHHHHHHHHH
Confidence 46789999999999999999999765 566666665322100 00 112233456677777
Q ss_pred HhcCCeEEEEcCcc
Q 035561 545 RDLAPVIIFVEDFD 558 (979)
Q Consensus 545 ~~~aP~ILfIDEID 558 (979)
+.....+++||...
T Consensus 179 ~~~~~DvVIIDTaG 192 (443)
T 3dm5_A 179 KSKGVDIIIVDTAG 192 (443)
T ss_dssp HHTTCSEEEEECCC
T ss_pred HhCCCCEEEEECCC
Confidence 77678999999874
No 162
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=96.70 E-value=0.0005 Score=67.58 Aligned_cols=30 Identities=23% Similarity=0.346 Sum_probs=24.5
Q ss_pred CceeEecCCCCCChHHHHHHHHH-HcCCCEE
Q 035561 488 PRGVLIVGERGTGKTSLALAIAA-EARVPVV 517 (979)
Q Consensus 488 P~gVLL~GPPGTGKTtLArAlA~-elg~~~i 517 (979)
|.-|+|.|+|||||||+|+.+++ ..+.+++
T Consensus 2 ~~~I~i~G~~GsGKST~a~~L~~~~~~~~~i 32 (181)
T 1ly1_A 2 KKIILTIGCPGSGKSTWAREFIAKNPGFYNI 32 (181)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHSTTEEEE
T ss_pred CeEEEEecCCCCCHHHHHHHHHhhcCCcEEe
Confidence 55689999999999999999998 4554433
No 163
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=96.68 E-value=0.0033 Score=66.24 Aligned_cols=70 Identities=16% Similarity=0.143 Sum_probs=43.9
Q ss_pred eeEecCCCCCChHHHHHHHHHHc---CCCEEEeechh---h---hhhhhcccc-----hhhHHHHHHHHHh----cCCeE
Q 035561 490 GVLIVGERGTGKTSLALAIAAEA---RVPVVNVEAQE---L---EAGLWVGQS-----ASNVRELFQTARD----LAPVI 551 (979)
Q Consensus 490 gVLL~GPPGTGKTtLArAlA~el---g~~~i~Is~sd---L---~~~~~vG~~-----~~~Ir~lF~~A~~----~aP~I 551 (979)
-++++||||+||||++..++..+ +..++.++... . +.+. .|.. .....++++.+.. ..+.+
T Consensus 14 i~litG~mGsGKTT~ll~~~~r~~~~g~kVli~~~~~d~r~~~~i~sr-lG~~~~~~~~~~~~~i~~~i~~~~~~~~~dv 92 (223)
T 2b8t_A 14 IEFITGPMFAGKTAELIRRLHRLEYADVKYLVFKPKIDTRSIRNIQSR-TGTSLPSVEVESAPEILNYIMSNSFNDETKV 92 (223)
T ss_dssp EEEEECSTTSCHHHHHHHHHHHHHHTTCCEEEEEECCCGGGCSSCCCC-CCCSSCCEEESSTHHHHHHHHSTTSCTTCCE
T ss_pred EEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEEEeccCchHHHHHHHh-cCCCccccccCCHHHHHHHHHHHhhCCCCCE
Confidence 46778999999999998888765 56666664322 0 1011 1211 1123456666654 24889
Q ss_pred EEEcCcccc
Q 035561 552 IFVEDFDLF 560 (979)
Q Consensus 552 LfIDEIDaL 560 (979)
|+|||+..+
T Consensus 93 ViIDEaQ~l 101 (223)
T 2b8t_A 93 IGIDEVQFF 101 (223)
T ss_dssp EEECSGGGS
T ss_pred EEEecCccC
Confidence 999999765
No 164
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=96.67 E-value=0.00093 Score=71.09 Aligned_cols=33 Identities=39% Similarity=0.504 Sum_probs=29.5
Q ss_pred eeEecCCCCCChHHHHHHHHHHcCCCEEEeech
Q 035561 490 GVLIVGERGTGKTSLALAIAAEARVPVVNVEAQ 522 (979)
Q Consensus 490 gVLL~GPPGTGKTtLArAlA~elg~~~i~Is~s 522 (979)
-++|.|||||||||+|+++|+.++.+++..+..
T Consensus 3 li~I~G~~GSGKSTla~~La~~~~~~~i~~D~~ 35 (253)
T 2ze6_A 3 LHLIYGPTCSGKTDMAIQIAQETGWPVVALDRV 35 (253)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHCCCEEECCSG
T ss_pred EEEEECCCCcCHHHHHHHHHhcCCCeEEeccHH
Confidence 478999999999999999999999998877653
No 165
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=96.67 E-value=0.00086 Score=69.03 Aligned_cols=32 Identities=16% Similarity=0.296 Sum_probs=28.0
Q ss_pred CceeEecCCCCCChHHHHHHHHHHcCCCEEEe
Q 035561 488 PRGVLIVGERGTGKTSLALAIAAEARVPVVNV 519 (979)
Q Consensus 488 P~gVLL~GPPGTGKTtLArAlA~elg~~~i~I 519 (979)
+..|+|.|+|||||||+++.+|+.++.+++..
T Consensus 4 ~~~I~l~G~~GsGKsT~a~~La~~l~~~~i~~ 35 (220)
T 1aky_A 4 SIRMVLIGPPGAGKGTQAPNLQERFHAAHLAT 35 (220)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHHCCEEEEH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHcCceEEeh
Confidence 45699999999999999999999999876544
No 166
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=96.66 E-value=0.0013 Score=65.37 Aligned_cols=38 Identities=21% Similarity=0.442 Sum_probs=32.6
Q ss_pred CCceeEecCCCCCChHHHHHHHHHHc---CCCEEEeechhh
Q 035561 487 APRGVLIVGERGTGKTSLALAIAAEA---RVPVVNVEAQEL 524 (979)
Q Consensus 487 ~P~gVLL~GPPGTGKTtLArAlA~el---g~~~i~Is~sdL 524 (979)
.+.-+.|.|++||||||+++.++..+ |.+++.+++..+
T Consensus 4 ~g~~i~l~G~~GsGKST~~~~L~~~l~~~g~~~i~~d~~~~ 44 (179)
T 2pez_A 4 RGCTVWLTGLSGAGKTTVSMALEEYLVCHGIPCYTLDGDNI 44 (179)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHhhCCCcEEEECChHH
Confidence 34568899999999999999999987 999998886554
No 167
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=96.66 E-value=0.00077 Score=66.09 Aligned_cols=29 Identities=28% Similarity=0.491 Sum_probs=26.6
Q ss_pred eeEecCCCCCChHHHHHHHHHHcCCCEEE
Q 035561 490 GVLIVGERGTGKTSLALAIAAEARVPVVN 518 (979)
Q Consensus 490 gVLL~GPPGTGKTtLArAlA~elg~~~i~ 518 (979)
.|+|.|+|||||||+++.++..++.+++.
T Consensus 4 ~I~l~G~~GsGKsT~a~~La~~lg~~~id 32 (173)
T 1e6c_A 4 PIFMVGARGCGMTTVGRELARALGYEFVD 32 (173)
T ss_dssp CEEEESCTTSSHHHHHHHHHHHHTCEEEE
T ss_pred eEEEECCCCCCHHHHHHHHHHHhCCcEEc
Confidence 58999999999999999999999988764
No 168
>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}
Probab=96.65 E-value=0.0015 Score=67.38 Aligned_cols=38 Identities=34% Similarity=0.379 Sum_probs=29.5
Q ss_pred CCCCCceeEecCCCCCChHHHHHHHHHH----cCCCEEEeec
Q 035561 484 GARAPRGVLIVGERGTGKTSLALAIAAE----ARVPVVNVEA 521 (979)
Q Consensus 484 G~~~P~gVLL~GPPGTGKTtLArAlA~e----lg~~~i~Is~ 521 (979)
|+++..-++++|+||+|||++|..+|.+ .+.++++++.
T Consensus 26 Gl~~G~l~~i~G~pG~GKT~l~l~~~~~~~~~~~~~v~~~s~ 67 (251)
T 2zts_A 26 GFPEGTTVLLTGGTGTGKTTFAAQFIYKGAEEYGEPGVFVTL 67 (251)
T ss_dssp SEETTCEEEEECCTTSSHHHHHHHHHHHHHHHHCCCEEEEES
T ss_pred CCCCCeEEEEEeCCCCCHHHHHHHHHHHHHHhcCCCceeecc
Confidence 5566677999999999999999887643 3677777664
No 169
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=96.65 E-value=0.00086 Score=66.37 Aligned_cols=30 Identities=27% Similarity=0.241 Sum_probs=23.6
Q ss_pred CceeEecCCCCCChHHHHHHHHHHcCCCEE
Q 035561 488 PRGVLIVGERGTGKTSLALAIAAEARVPVV 517 (979)
Q Consensus 488 P~gVLL~GPPGTGKTtLArAlA~elg~~~i 517 (979)
|.-|+|.|+|||||||+|+.+++.++.+++
T Consensus 5 ~~~I~l~G~~GsGKST~a~~La~~l~~~~i 34 (183)
T 2vli_A 5 SPIIWINGPFGVGKTHTAHTLHERLPGSFV 34 (183)
T ss_dssp CCEEEEECCC----CHHHHHHHHHSTTCEE
T ss_pred CeEEEEECCCCCCHHHHHHHHHHhcCCCEE
Confidence 456899999999999999999999999877
No 170
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=96.64 E-value=0.00074 Score=69.94 Aligned_cols=34 Identities=18% Similarity=0.292 Sum_probs=28.3
Q ss_pred CCCceeEecCCCCCChHHHHHHHHHHcCCCEEEe
Q 035561 486 RAPRGVLIVGERGTGKTSLALAIAAEARVPVVNV 519 (979)
Q Consensus 486 ~~P~gVLL~GPPGTGKTtLArAlA~elg~~~i~I 519 (979)
..|.-|+|.|+|||||||+++.+|+.++.+++..
T Consensus 5 ~~~~~I~l~G~~GsGKsT~a~~La~~l~~~~i~~ 38 (227)
T 1zd8_A 5 ARLLRAVIMGAPGSGKGTVSSRITTHFELKHLSS 38 (227)
T ss_dssp --CCEEEEEECTTSSHHHHHHHHHHHSSSEEEEH
T ss_pred ccCcEEEEECCCCCCHHHHHHHHHHHcCCeEEec
Confidence 3456799999999999999999999999876644
No 171
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=96.63 E-value=0.00066 Score=67.48 Aligned_cols=31 Identities=26% Similarity=0.399 Sum_probs=26.6
Q ss_pred CceeEecCCCCCChHHHHHHHHHHcCCCEEE
Q 035561 488 PRGVLIVGERGTGKTSLALAIAAEARVPVVN 518 (979)
Q Consensus 488 P~gVLL~GPPGTGKTtLArAlA~elg~~~i~ 518 (979)
+..|+|.|+|||||||+++.+|+.++.+++.
T Consensus 4 g~~I~l~G~~GsGKST~~~~La~~l~~~~i~ 34 (186)
T 3cm0_A 4 GQAVIFLGPPGAGKGTQASRLAQELGFKKLS 34 (186)
T ss_dssp EEEEEEECCTTSCHHHHHHHHHHHHTCEEEC
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCCeEec
Confidence 3458999999999999999999999876543
No 172
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=96.61 E-value=0.00081 Score=66.71 Aligned_cols=25 Identities=24% Similarity=0.369 Sum_probs=23.2
Q ss_pred ceeEecCCCCCChHHHHHHHHHHcC
Q 035561 489 RGVLIVGERGTGKTSLALAIAAEAR 513 (979)
Q Consensus 489 ~gVLL~GPPGTGKTtLArAlA~elg 513 (979)
.-|+|.|+|||||||+++.++..++
T Consensus 4 ~~I~i~G~~GsGKsT~~~~L~~~l~ 28 (192)
T 1kht_A 4 KVVVVTGVPGVGSTTSSQLAMDNLR 28 (192)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHH
Confidence 4589999999999999999999887
No 173
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=96.60 E-value=0.00084 Score=67.24 Aligned_cols=32 Identities=16% Similarity=0.293 Sum_probs=27.5
Q ss_pred CceeEecCCCCCChHHHHHHHHHHcCCCEEEe
Q 035561 488 PRGVLIVGERGTGKTSLALAIAAEARVPVVNV 519 (979)
Q Consensus 488 P~gVLL~GPPGTGKTtLArAlA~elg~~~i~I 519 (979)
|.-|+|.|+|||||||+++.+++.++.+++..
T Consensus 12 ~~~I~l~G~~GsGKsT~a~~L~~~l~~~~i~~ 43 (199)
T 2bwj_A 12 CKIIFIIGGPGSGKGTQCEKLVEKYGFTHLST 43 (199)
T ss_dssp SCEEEEEECTTSSHHHHHHHHHHHHTCEEEEH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHhCCeEEcH
Confidence 45699999999999999999999999766543
No 174
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=96.60 E-value=0.00098 Score=68.19 Aligned_cols=30 Identities=20% Similarity=0.434 Sum_probs=26.7
Q ss_pred eeEecCCCCCChHHHHHHHHHHcCCCEEEe
Q 035561 490 GVLIVGERGTGKTSLALAIAAEARVPVVNV 519 (979)
Q Consensus 490 gVLL~GPPGTGKTtLArAlA~elg~~~i~I 519 (979)
.|+|.|||||||||+|+.+++.++.+++..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~~~~~i~~ 31 (216)
T 3dl0_A 2 NLVLMGLPGAGKGTQGERIVEKYGIPHIST 31 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHSSCCEEEH
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCcEEeH
Confidence 378999999999999999999999887654
No 175
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=96.57 E-value=0.001 Score=67.90 Aligned_cols=29 Identities=24% Similarity=0.492 Sum_probs=26.4
Q ss_pred eEecCCCCCChHHHHHHHHHHcCCCEEEe
Q 035561 491 VLIVGERGTGKTSLALAIAAEARVPVVNV 519 (979)
Q Consensus 491 VLL~GPPGTGKTtLArAlA~elg~~~i~I 519 (979)
|+|.|||||||||+|+.+++.++.+++..
T Consensus 3 I~l~G~~GsGKsT~a~~L~~~~~~~~i~~ 31 (216)
T 3fb4_A 3 IVLMGLPGAGKGTQAEQIIEKYEIPHIST 31 (216)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHCCCEEEH
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCcEeeH
Confidence 78999999999999999999999887654
No 176
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=96.57 E-value=0.0011 Score=64.76 Aligned_cols=30 Identities=17% Similarity=0.426 Sum_probs=26.9
Q ss_pred eeEecCCCCCChHHHHHHHHHHcCCCEEEe
Q 035561 490 GVLIVGERGTGKTSLALAIAAEARVPVVNV 519 (979)
Q Consensus 490 gVLL~GPPGTGKTtLArAlA~elg~~~i~I 519 (979)
.|+|.|+|||||||+++.+++.++.+++..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~l~~~~i~~ 31 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVGSLLSRSLNIPFYDV 31 (168)
T ss_dssp EEEEESCTTSCHHHHHHHHHHHHTCCEEEH
T ss_pred eEEEECCCCCCHHHHHHHHHHHhCCCEEEC
Confidence 388999999999999999999999887643
No 177
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=96.57 E-value=0.0011 Score=67.06 Aligned_cols=34 Identities=12% Similarity=0.233 Sum_probs=28.6
Q ss_pred CCceeEecCCCCCChHHHHHHHHHHcCCCEEEee
Q 035561 487 APRGVLIVGERGTGKTSLALAIAAEARVPVVNVE 520 (979)
Q Consensus 487 ~P~gVLL~GPPGTGKTtLArAlA~elg~~~i~Is 520 (979)
.+.-|+|.|+|||||||+++.+++.+|.+++..+
T Consensus 14 ~~~~I~l~G~~GsGKsT~~~~L~~~~g~~~i~~d 47 (203)
T 1ukz_A 14 QVSVIFVLGGPGAGKGTQCEKLVKDYSFVHLSAG 47 (203)
T ss_dssp TCEEEEEECSTTSSHHHHHHHHHHHSSCEEEEHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHcCceEEeHH
Confidence 3456899999999999999999999988665543
No 178
>3e1s_A Exodeoxyribonuclease V, subunit RECD; alpha and beta protein, ATP-binding, nucleotide-binding, HYD; 2.20A {Deinococcus radiodurans} PDB: 3gp8_A 3gpl_A*
Probab=96.54 E-value=0.0027 Score=75.61 Aligned_cols=98 Identities=23% Similarity=0.307 Sum_probs=56.7
Q ss_pred ceeEecCCCCCChHHHHHHHHHHc---CCCEEEeechhhhhh---hhcccchhhHHHHHHHHH---------hcCCeEEE
Q 035561 489 RGVLIVGERGTGKTSLALAIAAEA---RVPVVNVEAQELEAG---LWVGQSASNVRELFQTAR---------DLAPVIIF 553 (979)
Q Consensus 489 ~gVLL~GPPGTGKTtLArAlA~el---g~~~i~Is~sdL~~~---~~vG~~~~~Ir~lF~~A~---------~~aP~ILf 553 (979)
..++++||||||||+++++++..+ +.+++.+..+.-... ...+.....+..++.... .....+|+
T Consensus 205 ~~~~I~G~pGTGKTt~i~~l~~~l~~~g~~Vl~~ApT~~Aa~~L~e~~~~~a~Tih~ll~~~~~~~~~~~~~~~~~dvlI 284 (574)
T 3e1s_A 205 RLVVLTGGPGTGKSTTTKAVADLAESLGLEVGLCAPTGKAARRLGEVTGRTASTVHRLLGYGPQGFRHNHLEPAPYDLLI 284 (574)
T ss_dssp SEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEESSHHHHHHHHHHHTSCEEEHHHHTTEETTEESCSSSSCCSCSEEE
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEecCcHHHHHHhHhhhcccHHHHHHHHcCCcchhhhhhcccccCCEEE
Confidence 568999999999999999998754 566665543221101 012223334444432111 11347999
Q ss_pred EcCccccccccccccCCCchhhHHHHHHHHhhhcccccCCeEEEEecccc
Q 035561 554 VEDFDLFAGVRGQFIHTKQQDHESFINQLLVELDGFEKQDGVVLMATTRN 603 (979)
Q Consensus 554 IDEIDaL~~~r~~~~~~~~~~~~~iln~LL~~LDg~~~~~~ViVIATTN~ 603 (979)
|||+..+ ....+..|+..+ .....+++++-.+.
T Consensus 285 IDEasml--------------~~~~~~~Ll~~~---~~~~~lilvGD~~Q 317 (574)
T 3e1s_A 285 VDEVSMM--------------GDALMLSLLAAV---PPGARVLLVGDTDQ 317 (574)
T ss_dssp ECCGGGC--------------CHHHHHHHHTTS---CTTCEEEEEECTTS
T ss_pred EcCccCC--------------CHHHHHHHHHhC---cCCCEEEEEecccc
Confidence 9999655 223555565444 34456777766554
No 179
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=96.54 E-value=0.0013 Score=73.80 Aligned_cols=69 Identities=23% Similarity=0.284 Sum_probs=44.7
Q ss_pred ceeEecCCCCCChHHHHHHHHHHc----CCCEEEeech-hhhh--------hhhcccchhhHHHHHHHHHhcCCeEEEEc
Q 035561 489 RGVLIVGERGTGKTSLALAIAAEA----RVPVVNVEAQ-ELEA--------GLWVGQSASNVRELFQTARDLAPVIIFVE 555 (979)
Q Consensus 489 ~gVLL~GPPGTGKTtLArAlA~el----g~~~i~Is~s-dL~~--------~~~vG~~~~~Ir~lF~~A~~~aP~ILfID 555 (979)
..+++.||+||||||+++++++.. +..++.+.-. ++.. ....+.....+.+.+..|-...|.+|++|
T Consensus 124 g~i~I~GptGSGKTTlL~~l~g~~~~~~~~~i~t~ed~~e~~~~~~~~~v~q~~~~~~~~~~~~~La~aL~~~PdvillD 203 (356)
T 3jvv_A 124 GLVLVTGPTGSGKSTTLAAMLDYLNNTKYHHILTIEDPIEFVHESKKCLVNQREVHRDTLGFSEALRSALREDPDIILVG 203 (356)
T ss_dssp EEEEEECSTTSCHHHHHHHHHHHHHHHCCCEEEEEESSCCSCCCCSSSEEEEEEBTTTBSCHHHHHHHHTTSCCSEEEES
T ss_pred CEEEEECCCCCCHHHHHHHHHhcccCCCCcEEEEccCcHHhhhhccccceeeeeeccccCCHHHHHHHHhhhCcCEEecC
Confidence 358899999999999999999876 2333332211 1110 00112222345567777778899999999
Q ss_pred Cc
Q 035561 556 DF 557 (979)
Q Consensus 556 EI 557 (979)
|+
T Consensus 204 Ep 205 (356)
T 3jvv_A 204 EM 205 (356)
T ss_dssp CC
T ss_pred CC
Confidence 98
No 180
>2ius_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- binding, cell division, transmembrane, inner membrane; HET: DNA; 2.7A {Escherichia coli} PDB: 2j5p_A*
Probab=96.53 E-value=0.0061 Score=71.63 Aligned_cols=75 Identities=16% Similarity=0.285 Sum_probs=50.2
Q ss_pred Ce-EEEEcCccccccccccccCCCchhhHHHHHHHHhhhcccccCCeEEEEecccchh--hchhhhhcCCceeeEeccCC
Q 035561 549 PV-IIFVEDFDLFAGVRGQFIHTKQQDHESFINQLLVELDGFEKQDGVVLMATTRNIK--QIDEALQRPGRMDRIFNLQK 625 (979)
Q Consensus 549 P~-ILfIDEIDaL~~~r~~~~~~~~~~~~~iln~LL~~LDg~~~~~~ViVIATTN~pe--~LDpALlRpgRFd~~I~~~~ 625 (979)
|. +|+|||+..+.... .......+..+.. ....-++.+|.+|.+|. .++..++. -|...|-+..
T Consensus 297 P~ivlvIDE~~~ll~~~-------~~~~~~~l~~Lar----~gRa~GI~LIlaTQrp~~dvl~~~i~~--n~~~RI~lrv 363 (512)
T 2ius_A 297 PYIVVLVDEFADLMMTV-------GKKVEELIARLAQ----KARAAGIHLVLATQRPSVDVITGLIKA--NIPTRIAFTV 363 (512)
T ss_dssp CEEEEEEETHHHHHHHH-------HHHHHHHHHHHHH----HCGGGTEEEEEEESCCCTTTSCHHHHH--HCCEEEEECC
T ss_pred CcEEEEEeCHHHHHhhh-------hHHHHHHHHHHHH----HhhhCCcEEEEEecCCccccccHHHHh--hcCCeEEEEc
Confidence 54 89999998775311 1122333333322 23334678888888876 68888877 7888888988
Q ss_pred CCHHHHHHHHH
Q 035561 626 PTQSEREKILR 636 (979)
Q Consensus 626 Pd~eeR~~IL~ 636 (979)
.+..+...|+.
T Consensus 364 ~s~~dsr~ilg 374 (512)
T 2ius_A 364 SSKIDSRTILD 374 (512)
T ss_dssp SSHHHHHHHHS
T ss_pred CCHHHHHHhcC
Confidence 89988887774
No 181
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=96.53 E-value=0.0012 Score=69.75 Aligned_cols=34 Identities=15% Similarity=0.273 Sum_probs=29.1
Q ss_pred CCCceeEecCCCCCChHHHHHHHHHHcCCCEEEe
Q 035561 486 RAPRGVLIVGERGTGKTSLALAIAAEARVPVVNV 519 (979)
Q Consensus 486 ~~P~gVLL~GPPGTGKTtLArAlA~elg~~~i~I 519 (979)
..|..|+|.|||||||||+|+.+++.++.+.+++
T Consensus 27 ~~~~~I~l~G~~GsGKsT~a~~L~~~~g~~~is~ 60 (243)
T 3tlx_A 27 KPDGRYIFLGAPGSGKGTQSLNLKKSHCYCHLST 60 (243)
T ss_dssp SCCEEEEEECCTTSSHHHHHHHHHHHHCCEEEEH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHhCCeEEec
Confidence 3567799999999999999999999998766544
No 182
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=96.52 E-value=0.0045 Score=63.31 Aligned_cols=23 Identities=30% Similarity=0.443 Sum_probs=21.1
Q ss_pred eeEecCCCCCChHHHHHHHHHHc
Q 035561 490 GVLIVGERGTGKTSLALAIAAEA 512 (979)
Q Consensus 490 gVLL~GPPGTGKTtLArAlA~el 512 (979)
.+.|.||+|+||||+++.+++.+
T Consensus 3 ~i~i~G~nG~GKTTll~~l~g~~ 25 (189)
T 2i3b_A 3 HVFLTGPPGVGKTTLIHKASEVL 25 (189)
T ss_dssp CEEEESCCSSCHHHHHHHHHHHH
T ss_pred EEEEECCCCChHHHHHHHHHhhc
Confidence 37899999999999999999976
No 183
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=96.51 E-value=0.0017 Score=69.61 Aligned_cols=72 Identities=18% Similarity=0.251 Sum_probs=45.2
Q ss_pred CCCceeEecCCCCCChHHHHHHHHHHcC---CCEEEeechhh---h-------hhhhcccchhhHHHHHHHHHhcCCeEE
Q 035561 486 RAPRGVLIVGERGTGKTSLALAIAAEAR---VPVVNVEAQEL---E-------AGLWVGQSASNVRELFQTARDLAPVII 552 (979)
Q Consensus 486 ~~P~gVLL~GPPGTGKTtLArAlA~elg---~~~i~Is~sdL---~-------~~~~vG~~~~~Ir~lF~~A~~~aP~IL 552 (979)
++..-++|.||+|+||||+++++++... .--+.+....+ . ....+|.....++..+..+-...|.+|
T Consensus 23 ~~g~~v~i~Gp~GsGKSTll~~l~g~~~~~~~G~I~~~g~~i~~~~~~~~~~v~q~~~gl~~~~l~~~la~aL~~~p~il 102 (261)
T 2eyu_A 23 RKMGLILVTGPTGSGKSTTIASMIDYINQTKSYHIITIEDPIEYVFKHKKSIVNQREVGEDTKSFADALRAALREDPDVI 102 (261)
T ss_dssp CSSEEEEEECSTTCSHHHHHHHHHHHHHHHCCCEEEEEESSCCSCCCCSSSEEEEEEBTTTBSCHHHHHHHHHHHCCSEE
T ss_pred CCCCEEEEECCCCccHHHHHHHHHHhCCCCCCCEEEEcCCcceeecCCcceeeeHHHhCCCHHHHHHHHHHHHhhCCCEE
Confidence 3445688999999999999999998652 11222222111 0 000111122345667777777789999
Q ss_pred EEcCc
Q 035561 553 FVEDF 557 (979)
Q Consensus 553 fIDEI 557 (979)
++||.
T Consensus 103 llDEp 107 (261)
T 2eyu_A 103 FVGEM 107 (261)
T ss_dssp EESCC
T ss_pred EeCCC
Confidence 99997
No 184
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=96.50 E-value=0.0013 Score=68.48 Aligned_cols=32 Identities=22% Similarity=0.248 Sum_probs=28.0
Q ss_pred CceeEecCCCCCChHHHHHHHHHHcCCCEEEe
Q 035561 488 PRGVLIVGERGTGKTSLALAIAAEARVPVVNV 519 (979)
Q Consensus 488 P~gVLL~GPPGTGKTtLArAlA~elg~~~i~I 519 (979)
+..|+|.|+|||||||+++.+|+.++.+++..
T Consensus 16 ~~~I~l~G~~GsGKsT~a~~La~~l~~~~i~~ 47 (233)
T 1ak2_A 16 GVRAVLLGPPGAGKGTQAPKLAKNFCVCHLAT 47 (233)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHHTCEEEEH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCCceecH
Confidence 45699999999999999999999999776543
No 185
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=96.50 E-value=0.001 Score=66.20 Aligned_cols=22 Identities=27% Similarity=0.496 Sum_probs=18.4
Q ss_pred CCCceeEecCCCCCChHHHHHH
Q 035561 486 RAPRGVLIVGERGTGKTSLALA 507 (979)
Q Consensus 486 ~~P~gVLL~GPPGTGKTtLArA 507 (979)
+.+.-+.|.||+|+||||++++
T Consensus 7 ~~gei~~l~G~nGsGKSTl~~~ 28 (171)
T 4gp7_A 7 PELSLVVLIGSSGSGKSTFAKK 28 (171)
T ss_dssp ESSEEEEEECCTTSCHHHHHHH
T ss_pred CCCEEEEEECCCCCCHHHHHHH
Confidence 3445688999999999999994
No 186
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=96.50 E-value=0.0012 Score=69.19 Aligned_cols=39 Identities=13% Similarity=0.273 Sum_probs=32.4
Q ss_pred CCCCceeEecCCCCCChHHHHHHHHHHcCCCEEEeechhhh
Q 035561 485 ARAPRGVLIVGERGTGKTSLALAIAAEARVPVVNVEAQELE 525 (979)
Q Consensus 485 ~~~P~gVLL~GPPGTGKTtLArAlA~elg~~~i~Is~sdL~ 525 (979)
.+.|+-|+|.||||+||+|.|+.||+.+|.+. ++..+++
T Consensus 26 ~~k~kiI~llGpPGsGKgTqa~~L~~~~g~~h--IstGdll 64 (217)
T 3umf_A 26 LAKAKVIFVLGGPGSGKGTQCEKLVQKFHFNH--LSSGDLL 64 (217)
T ss_dssp TTSCEEEEEECCTTCCHHHHHHHHHHHHCCEE--ECHHHHH
T ss_pred ccCCcEEEEECCCCCCHHHHHHHHHHHHCCce--EcHHHHH
Confidence 45677899999999999999999999998764 5666665
No 187
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=96.46 E-value=0.0016 Score=64.23 Aligned_cols=35 Identities=20% Similarity=0.377 Sum_probs=28.1
Q ss_pred CceeEecCCCCCChHHHHHHHHHHcCCCEEEeechhh
Q 035561 488 PRGVLIVGERGTGKTSLALAIAAEARVPVVNVEAQEL 524 (979)
Q Consensus 488 P~gVLL~GPPGTGKTtLArAlA~elg~~~i~Is~sdL 524 (979)
+..++|.||||+||||+++.+++.+|.+++ ++.++
T Consensus 8 g~~i~l~G~~GsGKSTl~~~l~~~~g~~~i--~~d~~ 42 (175)
T 1knq_A 8 HHIYVLMGVSGSGKSAVASEVAHQLHAAFL--DGDFL 42 (175)
T ss_dssp SEEEEEECSTTSCHHHHHHHHHHHHTCEEE--EGGGG
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHhhCcEEE--eCccc
Confidence 346889999999999999999999886654 44444
No 188
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=96.45 E-value=0.001 Score=68.55 Aligned_cols=31 Identities=19% Similarity=0.385 Sum_probs=27.4
Q ss_pred ceeEecCCCCCChHHHHHHHHHHcCCCEEEe
Q 035561 489 RGVLIVGERGTGKTSLALAIAAEARVPVVNV 519 (979)
Q Consensus 489 ~gVLL~GPPGTGKTtLArAlA~elg~~~i~I 519 (979)
..|+|.|+|||||||+++.+|+.++.+++..
T Consensus 6 ~~I~l~G~~GsGKsT~a~~La~~l~~~~i~~ 36 (217)
T 3be4_A 6 HNLILIGAPGSGKGTQCEFIKKEYGLAHLST 36 (217)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHHCCEEEEH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhCceEEeh
Confidence 4589999999999999999999999877654
No 189
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=96.45 E-value=0.00086 Score=69.13 Aligned_cols=37 Identities=24% Similarity=0.356 Sum_probs=29.8
Q ss_pred CCceeEecCCCCCChHHHHHHHHHHcCCCEEEeechhhh
Q 035561 487 APRGVLIVGERGTGKTSLALAIAAEARVPVVNVEAQELE 525 (979)
Q Consensus 487 ~P~gVLL~GPPGTGKTtLArAlA~elg~~~i~Is~sdL~ 525 (979)
.|..|+|.|||||||||+++.+|+.++.++ ++.++++
T Consensus 4 ~~~~I~l~G~~GsGKsT~~~~La~~l~~~~--i~~d~~~ 40 (222)
T 1zak_A 4 DPLKVMISGAPASGKGTQCELIKTKYQLAH--ISAGDLL 40 (222)
T ss_dssp CSCCEEEEESTTSSHHHHHHHHHHHHCCEE--CCHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhCCce--ecHHHHH
Confidence 456699999999999999999999999755 4544443
No 190
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=96.43 E-value=0.014 Score=64.08 Aligned_cols=36 Identities=33% Similarity=0.374 Sum_probs=28.6
Q ss_pred CCCceeEecCCCCCChHHHHHHHHHHc---CCCEEEeec
Q 035561 486 RAPRGVLIVGERGTGKTSLALAIAAEA---RVPVVNVEA 521 (979)
Q Consensus 486 ~~P~gVLL~GPPGTGKTtLArAlA~el---g~~~i~Is~ 521 (979)
..|.-+++.||+|+||||++..+|..+ +..+..+++
T Consensus 102 ~~~~vi~ivG~~GsGKTTl~~~LA~~l~~~g~kV~lv~~ 140 (306)
T 1vma_A 102 EPPFVIMVVGVNGTGKTTSCGKLAKMFVDEGKSVVLAAA 140 (306)
T ss_dssp SSCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEE
T ss_pred CCCeEEEEEcCCCChHHHHHHHHHHHHHhcCCEEEEEcc
Confidence 456778999999999999999999875 455555554
No 191
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=96.42 E-value=0.02 Score=62.47 Aligned_cols=59 Identities=15% Similarity=0.277 Sum_probs=38.1
Q ss_pred HHHHHHHHHHHHhhcChhHHHhcC-CCCCceeEecCCCCCChHHHHHHHHHHc----CCCEEEeec
Q 035561 461 ESMREEINEVVAFLQNPSAFQEMG-ARAPRGVLIVGERGTGKTSLALAIAAEA----RVPVVNVEA 521 (979)
Q Consensus 461 eevke~L~eiV~~L~~p~~f~~lG-~~~P~gVLL~GPPGTGKTtLArAlA~el----g~~~i~Is~ 521 (979)
+.+++.+.+.+..+..+.. ... ...+..++|.||+|+||||++..+|..+ |..+..+++
T Consensus 79 ~~~~~~~~~~l~~~l~~~~--~~~~~~~g~vi~lvG~~GsGKTTl~~~LA~~l~~~~G~~V~lv~~ 142 (296)
T 2px0_A 79 ENVVGKLQEILCDMLPSAD--KWQEPIHSKYIVLFGSTGAGKTTTLAKLAAISMLEKHKKIAFITT 142 (296)
T ss_dssp TTHHHHHHHHHHTTSCCGG--GSCCCCCSSEEEEEESTTSSHHHHHHHHHHHHHHTTCCCEEEEEC
T ss_pred HHHHHHHHHHHHHHhCCcc--cccccCCCcEEEEECCCCCCHHHHHHHHHHHHHHhcCCEEEEEec
Confidence 4456666655554332221 112 2346678999999999999999999764 556666655
No 192
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=96.41 E-value=0.0047 Score=71.18 Aligned_cols=38 Identities=24% Similarity=0.321 Sum_probs=31.0
Q ss_pred CCCCCceeEecCCCCCChHHHHHHHHHHc----CCCEEEeec
Q 035561 484 GARAPRGVLIVGERGTGKTSLALAIAAEA----RVPVVNVEA 521 (979)
Q Consensus 484 G~~~P~gVLL~GPPGTGKTtLArAlA~el----g~~~i~Is~ 521 (979)
|+++..-++|.|+||+|||+++..+|..+ |.++++++.
T Consensus 199 Gl~~G~liiI~G~pG~GKTtl~l~ia~~~~~~~g~~Vl~~s~ 240 (454)
T 2r6a_A 199 GFQRSDLIIVAARPSVGKTAFALNIAQNVATKTNENVAIFSL 240 (454)
T ss_dssp SBCTTCEEEEECCTTSCHHHHHHHHHHHHHHHSSCCEEEEES
T ss_pred CCCCCCEEEEECCCCCCHHHHHHHHHHHHHHhCCCcEEEEEC
Confidence 66666779999999999999999998754 567777664
No 193
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=96.40 E-value=0.011 Score=67.99 Aligned_cols=73 Identities=22% Similarity=0.150 Sum_probs=46.1
Q ss_pred CCceeEecCCCCCChHHHHHHHHHHc---CCCEEEeechhhhhh---------hhcc----------cchhhHHHHHHHH
Q 035561 487 APRGVLIVGERGTGKTSLALAIAAEA---RVPVVNVEAQELEAG---------LWVG----------QSASNVRELFQTA 544 (979)
Q Consensus 487 ~P~gVLL~GPPGTGKTtLArAlA~el---g~~~i~Is~sdL~~~---------~~vG----------~~~~~Ir~lF~~A 544 (979)
.|.-+++.||+|+||||++..+|..+ |..+..+++.-.-.+ ...| ......+.....+
T Consensus 96 ~~~vI~lvG~~GsGKTTt~~kLA~~l~~~G~kVllv~~D~~r~~a~eqL~~~~~~~gv~~~~~~~~~dp~~i~~~al~~a 175 (433)
T 3kl4_A 96 LPFIIMLVGVQGSGKTTTAGKLAYFYKKRGYKVGLVAADVYRPAAYDQLLQLGNQIGVQVYGEPNNQNPIEIAKKGVDIF 175 (433)
T ss_dssp SSEEEEECCCTTSCHHHHHHHHHHHHHHTTCCEEEEEECCSCHHHHHHHHHHHHTTTCCEECCTTCSCHHHHHHHHHHHT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEecCccchhHHHHHHHHHHhcCCceeeccccCCHHHHHHHHHHHH
Confidence 46778999999999999999999766 566666554311000 0001 1112234455556
Q ss_pred HhcCCeEEEEcCccc
Q 035561 545 RDLAPVIIFVEDFDL 559 (979)
Q Consensus 545 ~~~aP~ILfIDEIDa 559 (979)
....+.+++||....
T Consensus 176 ~~~~~DvvIIDTaGr 190 (433)
T 3kl4_A 176 VKNKMDIIIVDTAGR 190 (433)
T ss_dssp TTTTCSEEEEEECCC
T ss_pred HhcCCCEEEEECCCC
Confidence 556789999998743
No 194
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=96.38 E-value=0.0021 Score=65.29 Aligned_cols=36 Identities=33% Similarity=0.580 Sum_probs=28.9
Q ss_pred CCceeEecCCCCCChHHHHHHHHHHcCCCEEEeechhh
Q 035561 487 APRGVLIVGERGTGKTSLALAIAAEARVPVVNVEAQEL 524 (979)
Q Consensus 487 ~P~gVLL~GPPGTGKTtLArAlA~elg~~~i~Is~sdL 524 (979)
.+.-+.|.||+||||||+++.+++.+|..+ +++.++
T Consensus 28 ~g~~i~l~G~~GsGKSTl~~~L~~~~g~~~--i~~d~~ 63 (200)
T 4eun_A 28 PTRHVVVMGVSGSGKTTIAHGVADETGLEF--AEADAF 63 (200)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHHHCCEE--EEGGGG
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHhhCCeE--Eccccc
Confidence 456689999999999999999999997654 455444
No 195
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=96.36 E-value=0.0068 Score=66.96 Aligned_cols=39 Identities=23% Similarity=0.510 Sum_probs=33.4
Q ss_pred CCceeEecCCCCCChHHHHHHHHHHcCCCEEEeechhhh
Q 035561 487 APRGVLIVGERGTGKTSLALAIAAEARVPVVNVEAQELE 525 (979)
Q Consensus 487 ~P~gVLL~GPPGTGKTtLArAlA~elg~~~i~Is~sdL~ 525 (979)
.|.-++|.||+|||||+||..+|+.++.++++.+.-.+.
T Consensus 9 ~~~~i~i~GptgsGKt~la~~La~~~~~~iis~Ds~qvY 47 (316)
T 3foz_A 9 LPKAIFLMGPTASGKTALAIELRKILPVELISVDSALIY 47 (316)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHHHSCEEEEECCTTTTB
T ss_pred CCcEEEEECCCccCHHHHHHHHHHhCCCcEEeccccccc
Confidence 456688999999999999999999999888877766554
No 196
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=96.35 E-value=0.0067 Score=66.58 Aligned_cols=38 Identities=29% Similarity=0.211 Sum_probs=30.8
Q ss_pred CCCCCceeEecCCCCCChHHHHHHHHHHc---CCCEEEeec
Q 035561 484 GARAPRGVLIVGERGTGKTSLALAIAAEA---RVPVVNVEA 521 (979)
Q Consensus 484 G~~~P~gVLL~GPPGTGKTtLArAlA~el---g~~~i~Is~ 521 (979)
|+++..-++|.|+||+|||+++..+|..+ +.++++++.
T Consensus 64 Gl~~G~l~li~G~pG~GKTtl~l~ia~~~a~~g~~vl~~sl 104 (315)
T 3bh0_A 64 GYKRRNFVLIAARPSMGKTAFALKQAKNMSDNDDVVNLHSL 104 (315)
T ss_dssp SBCTTCEEEEECCTTSSHHHHHHHHHHHHHTTTCEEEEEES
T ss_pred CCCCCcEEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEEEC
Confidence 66767779999999999999999998764 456776664
No 197
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=96.33 E-value=0.0027 Score=64.43 Aligned_cols=39 Identities=18% Similarity=0.259 Sum_probs=31.0
Q ss_pred CCCceeEecCCCCCChHHHHHHHHHHc---CCCEEEeechhh
Q 035561 486 RAPRGVLIVGERGTGKTSLALAIAAEA---RVPVVNVEAQEL 524 (979)
Q Consensus 486 ~~P~gVLL~GPPGTGKTtLArAlA~el---g~~~i~Is~sdL 524 (979)
..+.-+.|.||+||||||+++++|+.+ |...+.+++.++
T Consensus 23 ~~g~~i~l~G~sGsGKSTl~~~La~~l~~~G~~~~~~d~d~~ 64 (200)
T 3uie_A 23 QKGCVIWVTGLSGSGKSTLACALNQMLYQKGKLCYILDGDNV 64 (200)
T ss_dssp SCCEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHhcCceEEEecCchh
Confidence 445678899999999999999999988 555556666554
No 198
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}
Probab=96.30 E-value=0.0053 Score=70.52 Aligned_cols=38 Identities=29% Similarity=0.206 Sum_probs=31.0
Q ss_pred CCCCCceeEecCCCCCChHHHHHHHHHHc----CCCEEEeec
Q 035561 484 GARAPRGVLIVGERGTGKTSLALAIAAEA----RVPVVNVEA 521 (979)
Q Consensus 484 G~~~P~gVLL~GPPGTGKTtLArAlA~el----g~~~i~Is~ 521 (979)
|+++..-++|.|+||+|||++|..+|... |.++++++.
T Consensus 196 Gl~~G~l~ii~G~pg~GKT~lal~ia~~~a~~~g~~vl~~sl 237 (444)
T 2q6t_A 196 TLGPGSLNIIAARPAMGKTAFALTIAQNAALKEGVGVGIYSL 237 (444)
T ss_dssp CCCTTCEEEEEECTTSCHHHHHHHHHHHHHHTTCCCEEEEES
T ss_pred CcCCCcEEEEEeCCCCCHHHHHHHHHHHHHHhCCCeEEEEEC
Confidence 56666778999999999999999988754 567777765
No 199
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=96.30 E-value=0.0028 Score=67.47 Aligned_cols=37 Identities=16% Similarity=0.315 Sum_probs=31.0
Q ss_pred CceeEecCCCCCChHHHHHHHHHH---cCCCEEEeechhh
Q 035561 488 PRGVLIVGERGTGKTSLALAIAAE---ARVPVVNVEAQEL 524 (979)
Q Consensus 488 P~gVLL~GPPGTGKTtLArAlA~e---lg~~~i~Is~sdL 524 (979)
+.-|+|+|+|||||||+|+.++.. .|.+++.++...+
T Consensus 4 ~~lIvl~G~pGSGKSTla~~La~~L~~~g~~~i~~~~D~~ 43 (260)
T 3a4m_A 4 IMLIILTGLPGVGKSTFSKNLAKILSKNNIDVIVLGSDLI 43 (260)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEECTHHH
T ss_pred CEEEEEEcCCCCCHHHHHHHHHHHHHhCCCEEEEECchHH
Confidence 456899999999999999999998 7888876666544
No 200
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=96.29 E-value=0.0026 Score=63.14 Aligned_cols=30 Identities=23% Similarity=0.161 Sum_probs=27.3
Q ss_pred eEecCCCCCChHHHHHHHHHHc---CCCEEEee
Q 035561 491 VLIVGERGTGKTSLALAIAAEA---RVPVVNVE 520 (979)
Q Consensus 491 VLL~GPPGTGKTtLArAlA~el---g~~~i~Is 520 (979)
|.|.|+|||||||+++.+++.+ |.+++..+
T Consensus 3 I~l~G~~GsGKsT~~~~L~~~l~~~g~~~i~~d 35 (195)
T 2pbr_A 3 IAFEGIDGSGKTTQAKKLYEYLKQKGYFVSLYR 35 (195)
T ss_dssp EEEECSTTSCHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEe
Confidence 7899999999999999999988 88888765
No 201
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=96.27 E-value=0.0019 Score=63.90 Aligned_cols=35 Identities=11% Similarity=0.183 Sum_probs=27.8
Q ss_pred eeEecCCCCCChHHHHHHHHHHcC---CCEEEeechhh
Q 035561 490 GVLIVGERGTGKTSLALAIAAEAR---VPVVNVEAQEL 524 (979)
Q Consensus 490 gVLL~GPPGTGKTtLArAlA~elg---~~~i~Is~sdL 524 (979)
-|+|.|+|||||||+++.+++.++ .++..++.+++
T Consensus 3 ~I~i~G~~GsGKsT~~~~L~~~l~~~g~~~~~~~~~~~ 40 (194)
T 1nks_A 3 IGIVTGIPGVGKSTVLAKVKEILDNQGINNKIINYGDF 40 (194)
T ss_dssp EEEEEECTTSCHHHHHHHHHHHHHTTTCCEEEEEHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHhcCceEEEEECChH
Confidence 488999999999999999999875 34555565544
No 202
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=96.23 E-value=0.0019 Score=66.31 Aligned_cols=30 Identities=20% Similarity=0.380 Sum_probs=26.7
Q ss_pred eeEecCCCCCChHHHHHHHHHHcCCCEEEe
Q 035561 490 GVLIVGERGTGKTSLALAIAAEARVPVVNV 519 (979)
Q Consensus 490 gVLL~GPPGTGKTtLArAlA~elg~~~i~I 519 (979)
.|+|.|+|||||||+++.+++.++.+++..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~g~~~i~~ 31 (214)
T 1e4v_A 2 RIILLGAPVAGKGTQAQFIMEKYGIPQIST 31 (214)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHCCCEEEH
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCeEEeH
Confidence 388999999999999999999999877654
No 203
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=96.19 E-value=0.003 Score=64.70 Aligned_cols=30 Identities=27% Similarity=0.380 Sum_probs=26.6
Q ss_pred ceeEecCCCCCChHHHHHHHHHHcCCCEEE
Q 035561 489 RGVLIVGERGTGKTSLALAIAAEARVPVVN 518 (979)
Q Consensus 489 ~gVLL~GPPGTGKTtLArAlA~elg~~~i~ 518 (979)
..+.|.||+||||||+++.+++.+|.+++.
T Consensus 6 ~~i~i~G~~GsGKSTl~~~L~~~~g~~~~d 35 (227)
T 1cke_A 6 PVITIDGPSGAGKGTLCKAMAEALQWHLLD 35 (227)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHTCEEEE
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhCCCccc
Confidence 458899999999999999999999977653
No 204
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=96.17 E-value=0.0047 Score=69.61 Aligned_cols=76 Identities=21% Similarity=0.329 Sum_probs=46.9
Q ss_pred hcCCCCCceeEecCCCCCChHHHHHHHHHHcC----CCEEEeech-hhhhhh---hccc-----chhhHHHHHHHHHhcC
Q 035561 482 EMGARAPRGVLIVGERGTGKTSLALAIAAEAR----VPVVNVEAQ-ELEAGL---WVGQ-----SASNVRELFQTARDLA 548 (979)
Q Consensus 482 ~lG~~~P~gVLL~GPPGTGKTtLArAlA~elg----~~~i~Is~s-dL~~~~---~vG~-----~~~~Ir~lF~~A~~~a 548 (979)
.+...+...++|.||+|+||||+++++++... -.++.+... ++.... ++.+ ....++..+..+....
T Consensus 130 ~l~~~~g~~i~ivG~~GsGKTTll~~l~~~~~~~~~g~I~~~e~~~e~~~~~~~~~v~Q~~~g~~~~~~~~~l~~~L~~~ 209 (372)
T 2ewv_A 130 ELCHRKMGLILVTGPTGSGKSTTIASMIDYINQTKSYHIITIEDPIEYVFKHKKSIVNQREVGEDTKSFADALRAALRED 209 (372)
T ss_dssp HHTTSSSEEEEEECSSSSSHHHHHHHHHHHHHHHSCCEEEEEESSCCSCCCCSSSEEEEEEBTTTBSCSHHHHHHHTTSC
T ss_pred HHhhcCCCEEEEECCCCCCHHHHHHHHHhhcCcCCCcEEEEecccHhhhhccCceEEEeeecCCCHHHHHHHHHHHhhhC
Confidence 33344556689999999999999999998652 233332211 110000 1111 2234456666776778
Q ss_pred CeEEEEcCc
Q 035561 549 PVIIFVEDF 557 (979)
Q Consensus 549 P~ILfIDEI 557 (979)
|.+|++||+
T Consensus 210 pd~illdE~ 218 (372)
T 2ewv_A 210 PDVIFVGEM 218 (372)
T ss_dssp CSEEEESCC
T ss_pred cCEEEECCC
Confidence 999999998
No 205
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=96.17 E-value=0.0029 Score=63.65 Aligned_cols=33 Identities=15% Similarity=0.196 Sum_probs=28.6
Q ss_pred CceeEecCCCCCChHHHHHHHHHHc-CCCEEEee
Q 035561 488 PRGVLIVGERGTGKTSLALAIAAEA-RVPVVNVE 520 (979)
Q Consensus 488 P~gVLL~GPPGTGKTtLArAlA~el-g~~~i~Is 520 (979)
+.-|.|.|+|||||||+++.+++.+ |.+++.++
T Consensus 4 ~~~I~l~G~~GsGKsT~~~~L~~~l~g~~~~~~~ 37 (204)
T 2v54_A 4 GALIVFEGLDKSGKTTQCMNIMESIPANTIKYLN 37 (204)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHTSCGGGEEEEE
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHHHCCCceEEEe
Confidence 4568999999999999999999998 57777654
No 206
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=96.14 E-value=0.017 Score=60.24 Aligned_cols=28 Identities=21% Similarity=0.255 Sum_probs=23.3
Q ss_pred CCCceeEecCCCCCChHHHHHHHHHHcC
Q 035561 486 RAPRGVLIVGERGTGKTSLALAIAAEAR 513 (979)
Q Consensus 486 ~~P~gVLL~GPPGTGKTtLArAlA~elg 513 (979)
+...-+.|.||+|+|||||++++++...
T Consensus 14 ~~G~ii~l~GpsGsGKSTLlk~L~g~~~ 41 (219)
T 1s96_A 14 AQGTLYIVSAPSGAGKSSLIQALLKTQP 41 (219)
T ss_dssp -CCCEEEEECCTTSCHHHHHHHHHHHSC
T ss_pred CCCcEEEEECCCCCCHHHHHHHHhccCC
Confidence 3445678999999999999999999764
No 207
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=96.10 E-value=0.0029 Score=65.66 Aligned_cols=33 Identities=21% Similarity=0.365 Sum_probs=28.0
Q ss_pred eEecCCCCCChHHHHHHHHHHcCCCEEEeechhhh
Q 035561 491 VLIVGERGTGKTSLALAIAAEARVPVVNVEAQELE 525 (979)
Q Consensus 491 VLL~GPPGTGKTtLArAlA~elg~~~i~Is~sdL~ 525 (979)
|+|.||||+||+|.|+.||+.+|.+. ++..+++
T Consensus 3 Iil~GpPGsGKgTqa~~La~~~g~~~--istGdll 35 (206)
T 3sr0_A 3 LVFLGPPGAGKGTQAKRLAKEKGFVH--ISTGDIL 35 (206)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHCCEE--EEHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHHCCeE--EcHHHHH
Confidence 78899999999999999999998765 4555654
No 208
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=96.09 E-value=0.0035 Score=65.78 Aligned_cols=31 Identities=23% Similarity=0.344 Sum_probs=27.4
Q ss_pred CceeEecCCCCCChHHHHHHHHHHcCCCEEE
Q 035561 488 PRGVLIVGERGTGKTSLALAIAAEARVPVVN 518 (979)
Q Consensus 488 P~gVLL~GPPGTGKTtLArAlA~elg~~~i~ 518 (979)
|.-+.|.||||+||||+++.+++.+|...+.
T Consensus 27 ~~~i~l~G~~GsGKSTl~k~La~~lg~~~~~ 57 (246)
T 2bbw_A 27 LLRAVILGPPGSGKGTVCQRIAQNFGLQHLS 57 (246)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHHCCCCEE
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHhCCeEec
Confidence 6679999999999999999999999876543
No 209
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=96.07 E-value=0.0022 Score=64.84 Aligned_cols=30 Identities=20% Similarity=0.355 Sum_probs=25.8
Q ss_pred eeEecCCCCCChHHHHHHHHHHcCCCEEEee
Q 035561 490 GVLIVGERGTGKTSLALAIAAEARVPVVNVE 520 (979)
Q Consensus 490 gVLL~GPPGTGKTtLArAlA~elg~~~i~Is 520 (979)
.|.|.|++||||||+++.+++ +|.+++..+
T Consensus 3 ~i~i~G~~GsGKSTl~~~L~~-~g~~~i~~d 32 (204)
T 2if2_A 3 RIGLTGNIGCGKSTVAQMFRE-LGAYVLDAD 32 (204)
T ss_dssp EEEEEECTTSSHHHHHHHHHH-TTCEEEEHH
T ss_pred EEEEECCCCcCHHHHHHHHHH-CCCEEEEcc
Confidence 488999999999999999999 887766543
No 210
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=96.07 E-value=0.003 Score=63.20 Aligned_cols=29 Identities=21% Similarity=0.440 Sum_probs=26.0
Q ss_pred eeEecCCCCCChHHHHHHHHHHcCCCEEE
Q 035561 490 GVLIVGERGTGKTSLALAIAAEARVPVVN 518 (979)
Q Consensus 490 gVLL~GPPGTGKTtLArAlA~elg~~~i~ 518 (979)
.|.|.|+|||||||+++.+++.++.+++.
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~~l~~~~~~ 30 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISKKLGYEIFK 30 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHCCEEEC
T ss_pred EEEEECCCccCHHHHHHHHHHhcCCcEEc
Confidence 37899999999999999999999987664
No 211
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=96.04 E-value=0.004 Score=62.16 Aligned_cols=30 Identities=20% Similarity=0.226 Sum_probs=26.2
Q ss_pred eEecCCCCCChHHHHHHHHHHc---CCCEEEee
Q 035561 491 VLIVGERGTGKTSLALAIAAEA---RVPVVNVE 520 (979)
Q Consensus 491 VLL~GPPGTGKTtLArAlA~el---g~~~i~Is 520 (979)
|.|.|++||||||+++.+++.+ |.+++...
T Consensus 3 I~l~G~~GsGKsT~~~~L~~~l~~~g~~v~~~~ 35 (197)
T 2z0h_A 3 ITFEGIDGSGKSTQIQLLAQYLEKRGKKVILKR 35 (197)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHHHCCC-EEEEE
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHCCCeEEEee
Confidence 7899999999999999999998 99887654
No 212
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=96.03 E-value=0.0028 Score=65.75 Aligned_cols=33 Identities=21% Similarity=0.373 Sum_probs=27.4
Q ss_pred eEecCCCCCChHHHHHHHHHHcCCCEEEeechhhh
Q 035561 491 VLIVGERGTGKTSLALAIAAEARVPVVNVEAQELE 525 (979)
Q Consensus 491 VLL~GPPGTGKTtLArAlA~elg~~~i~Is~sdL~ 525 (979)
|+|.|+|||||||+++.++..++.+++ +..+++
T Consensus 3 I~l~G~~GsGKsT~a~~La~~lg~~~i--~~dd~~ 35 (223)
T 2xb4_A 3 ILIFGPNGSGKGTQGNLVKDKYSLAHI--ESGGIF 35 (223)
T ss_dssp EEEECCTTSCHHHHHHHHHHHHTCEEE--EHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCeEE--chHHHH
Confidence 789999999999999999999987654 444544
No 213
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=96.01 E-value=0.011 Score=60.41 Aligned_cols=27 Identities=33% Similarity=0.438 Sum_probs=23.1
Q ss_pred eeEecCCCCCChHHHHHHHHHHcCCCE
Q 035561 490 GVLIVGERGTGKTSLALAIAAEARVPV 516 (979)
Q Consensus 490 gVLL~GPPGTGKTtLArAlA~elg~~~ 516 (979)
-|+|.||+|+|||||++.+..+....+
T Consensus 3 pIVi~GPSG~GK~Tl~~~L~~~~~~~~ 29 (186)
T 1ex7_A 3 PIVISGPSGTGKSTLLKKLFAEYPDSF 29 (186)
T ss_dssp CEEEECCTTSSHHHHHHHHHHHCTTTE
T ss_pred EEEEECCCCCCHHHHHHHHHHhCCCCe
Confidence 489999999999999999998875433
No 214
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=96.00 E-value=0.0031 Score=63.21 Aligned_cols=34 Identities=29% Similarity=0.460 Sum_probs=28.3
Q ss_pred CceeEecCCCCCChHHHHHHHHHHcCCCEEEeechhh
Q 035561 488 PRGVLIVGERGTGKTSLALAIAAEARVPVVNVEAQEL 524 (979)
Q Consensus 488 P~gVLL~GPPGTGKTtLArAlA~elg~~~i~Is~sdL 524 (979)
|..|.|.|++||||||+++.+|+. |.+++. ..++
T Consensus 8 ~~~I~i~G~~GsGKST~~~~La~~-g~~~id--~d~~ 41 (203)
T 1uf9_A 8 PIIIGITGNIGSGKSTVAALLRSW-GYPVLD--LDAL 41 (203)
T ss_dssp CEEEEEEECTTSCHHHHHHHHHHT-TCCEEE--HHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHC-CCEEEc--ccHH
Confidence 567899999999999999999998 877664 4444
No 215
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=95.98 E-value=0.004 Score=62.68 Aligned_cols=31 Identities=35% Similarity=0.410 Sum_probs=27.7
Q ss_pred eeEecCCCCCChHHHHHHHHHHcCCCEEEee
Q 035561 490 GVLIVGERGTGKTSLALAIAAEARVPVVNVE 520 (979)
Q Consensus 490 gVLL~GPPGTGKTtLArAlA~elg~~~i~Is 520 (979)
.|.|.|++||||||+++.+|+.+|.+++..+
T Consensus 4 ~i~i~G~~GsGKst~~~~la~~lg~~~~d~d 34 (208)
T 3ake_A 4 IVTIDGPSASGKSSVARRVAAALGVPYLSSG 34 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHTCCEEEHH
T ss_pred EEEEECCCCCCHHHHHHHHHHhcCCceeccc
Confidence 5889999999999999999999998887544
No 216
>2fz4_A DNA repair protein RAD25; RECA-like domain, DNA damage recognition domain, DNA binding; HET: DNA; 2.40A {Archaeoglobus fulgidus} SCOP: c.37.1.19
Probab=95.93 E-value=0.016 Score=60.78 Aligned_cols=33 Identities=33% Similarity=0.353 Sum_probs=28.4
Q ss_pred eeEecCCCCCChHHHHHHHHHHcCCCEEEeech
Q 035561 490 GVLIVGERGTGKTSLALAIAAEARVPVVNVEAQ 522 (979)
Q Consensus 490 gVLL~GPPGTGKTtLArAlA~elg~~~i~Is~s 522 (979)
.++++||+|+|||.++.+++..++.+++.+...
T Consensus 110 ~~ll~~~tG~GKT~~a~~~~~~~~~~~liv~P~ 142 (237)
T 2fz4_A 110 RGCIVLPTGSGKTHVAMAAINELSTPTLIVVPT 142 (237)
T ss_dssp EEEEEESSSTTHHHHHHHHHHHSCSCEEEEESS
T ss_pred CEEEEeCCCCCHHHHHHHHHHHcCCCEEEEeCC
Confidence 489999999999999999999988777776654
No 217
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=95.89 E-value=0.0035 Score=63.51 Aligned_cols=32 Identities=34% Similarity=0.468 Sum_probs=26.5
Q ss_pred eeEecCCCCCChHHHHHHHHHHcCCCEEEeechhh
Q 035561 490 GVLIVGERGTGKTSLALAIAAEARVPVVNVEAQEL 524 (979)
Q Consensus 490 gVLL~GPPGTGKTtLArAlA~elg~~~i~Is~sdL 524 (979)
.+.|.||+||||||+++.+++ +|.+++ ++.++
T Consensus 4 ~i~l~G~~GsGKST~~~~La~-lg~~~i--d~d~~ 35 (206)
T 1jjv_A 4 IVGLTGGIGSGKTTIANLFTD-LGVPLV--DADVV 35 (206)
T ss_dssp EEEEECSTTSCHHHHHHHHHT-TTCCEE--EHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH-CCCccc--chHHH
Confidence 478999999999999999998 888876 44444
No 218
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=95.88 E-value=0.0059 Score=61.43 Aligned_cols=28 Identities=21% Similarity=0.182 Sum_probs=24.7
Q ss_pred CceeEecCCCCCChHHHHHHHHHHcCCC
Q 035561 488 PRGVLIVGERGTGKTSLALAIAAEARVP 515 (979)
Q Consensus 488 P~gVLL~GPPGTGKTtLArAlA~elg~~ 515 (979)
+.-|+|.|+|||||||+++.+++.++..
T Consensus 4 ~~~I~i~G~~GsGKsT~~~~L~~~l~~~ 31 (213)
T 2plr_A 4 GVLIAFEGIDGSGKSSQATLLKDWIELK 31 (213)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHTTT
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHHHhhc
Confidence 3468999999999999999999998763
No 219
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=95.85 E-value=0.006 Score=64.34 Aligned_cols=40 Identities=20% Similarity=0.204 Sum_probs=32.2
Q ss_pred CCCceeEecCCCCCChHHHHHHHHHHcCCC--------EEEeechhhh
Q 035561 486 RAPRGVLIVGERGTGKTSLALAIAAEARVP--------VVNVEAQELE 525 (979)
Q Consensus 486 ~~P~gVLL~GPPGTGKTtLArAlA~elg~~--------~i~Is~sdL~ 525 (979)
..|.-|.|.|++||||||+|+.++..++.+ +..++..++.
T Consensus 20 ~~~~iI~I~G~~GSGKST~a~~L~~~lg~~~~d~~~~~~~~i~~D~~~ 67 (252)
T 1uj2_A 20 GEPFLIGVSGGTASGKSSVCAKIVQLLGQNEVDYRQKQVVILSQDSFY 67 (252)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHHHHTTGGGSCGGGCSEEEEEGGGGB
T ss_pred CCcEEEEEECCCCCCHHHHHHHHHHHhhhhcccccCCceEEEecCccc
Confidence 345678999999999999999999999876 3456776664
No 220
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=95.75 E-value=0.0056 Score=64.85 Aligned_cols=32 Identities=25% Similarity=0.331 Sum_probs=27.5
Q ss_pred CCceeEecCCCCCChHHHHHHHHHHcCCCEEE
Q 035561 487 APRGVLIVGERGTGKTSLALAIAAEARVPVVN 518 (979)
Q Consensus 487 ~P~gVLL~GPPGTGKTtLArAlA~elg~~~i~ 518 (979)
.|..+.|.|||||||||+++.+|+.++.+++.
T Consensus 8 ~~~~i~i~G~~GsGKsTla~~la~~lg~~~~d 39 (233)
T 3r20_A 8 GSLVVAVDGPAGTGKSSVSRGLARALGARYLD 39 (233)
T ss_dssp -CCEEEEECCTTSSHHHHHHHHHHHHTCEEEE
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhCCCccc
Confidence 35679999999999999999999999977654
No 221
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=95.73 E-value=0.0044 Score=63.49 Aligned_cols=34 Identities=24% Similarity=0.361 Sum_probs=28.3
Q ss_pred ceeEecCCCCCChHHHHHHHHHHcCCCEEEeechhh
Q 035561 489 RGVLIVGERGTGKTSLALAIAAEARVPVVNVEAQEL 524 (979)
Q Consensus 489 ~gVLL~GPPGTGKTtLArAlA~elg~~~i~Is~sdL 524 (979)
.-|.|+|++||||||+++.+++.+|.+++. +.++
T Consensus 13 ~iIgltG~~GSGKSTva~~L~~~lg~~vid--~D~~ 46 (192)
T 2grj_A 13 MVIGVTGKIGTGKSTVCEILKNKYGAHVVN--VDRI 46 (192)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHHCCEEEE--HHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHhcCCEEEE--CcHH
Confidence 347899999999999999999998987765 4444
No 222
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=95.72 E-value=0.0024 Score=64.63 Aligned_cols=31 Identities=13% Similarity=0.134 Sum_probs=25.9
Q ss_pred CCceeEecCCCCCChHHHHHHHHHHcCCCEE
Q 035561 487 APRGVLIVGERGTGKTSLALAIAAEARVPVV 517 (979)
Q Consensus 487 ~P~gVLL~GPPGTGKTtLArAlA~elg~~~i 517 (979)
.|.-|.|.|+|||||||+++.+++.++.+.+
T Consensus 9 ~~~~I~l~G~~GsGKST~~~~L~~~l~~~~~ 39 (212)
T 2wwf_A 9 KGKFIVFEGLDRSGKSTQSKLLVEYLKNNNV 39 (212)
T ss_dssp CSCEEEEEESTTSSHHHHHHHHHHHHHHTTC
T ss_pred cCCEEEEEcCCCCCHHHHHHHHHHHHHHcCC
Confidence 3566899999999999999999998765433
No 223
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=95.72 E-value=0.0093 Score=61.11 Aligned_cols=27 Identities=19% Similarity=0.313 Sum_probs=23.4
Q ss_pred CCceeEecCCCCCChHHHHHHHHHHcC
Q 035561 487 APRGVLIVGERGTGKTSLALAIAAEAR 513 (979)
Q Consensus 487 ~P~gVLL~GPPGTGKTtLArAlA~elg 513 (979)
.+.-+.|.||+|+||||+++.+++...
T Consensus 7 ~g~~i~l~GpsGsGKsTl~~~L~~~~~ 33 (208)
T 3tau_A 7 RGLLIVLSGPSGVGKGTVREAVFKDPE 33 (208)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHSTT
T ss_pred CCcEEEEECcCCCCHHHHHHHHHhhCC
Confidence 345688999999999999999999874
No 224
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=95.70 E-value=0.0039 Score=70.09 Aligned_cols=30 Identities=23% Similarity=0.361 Sum_probs=27.2
Q ss_pred ceeEecCCCCCChHHHHHHHHHHcCCCEEE
Q 035561 489 RGVLIVGERGTGKTSLALAIAAEARVPVVN 518 (979)
Q Consensus 489 ~gVLL~GPPGTGKTtLArAlA~elg~~~i~ 518 (979)
.+++|.||||+||||+++++|+.++.+|+.
T Consensus 25 ~~i~l~G~~G~GKTTl~~~la~~l~~~f~~ 54 (359)
T 2ga8_A 25 VCVILVGSPGSGKSTIAEELCQIINEKYHT 54 (359)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCcHHHHHHHHHHHhCCCeee
Confidence 369999999999999999999999988855
No 225
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A*
Probab=95.70 E-value=0.021 Score=72.06 Aligned_cols=44 Identities=30% Similarity=0.315 Sum_probs=33.6
Q ss_pred ccCcHHHHHHHHHHHHhhcChhHHHhcCCCCCceeEecCCCCCChHHHHHHHHHH
Q 035561 457 FASVESMREEINEVVAFLQNPSAFQEMGARAPRGVLIVGERGTGKTSLALAIAAE 511 (979)
Q Consensus 457 IvGleevke~L~eiV~~L~~p~~f~~lG~~~P~gVLL~GPPGTGKTtLArAlA~e 511 (979)
.+|-++..+.|.+.+... ...+-+.|+||+|+|||+||+.+++.
T Consensus 130 ~VGRe~eLeeL~elL~~~-----------d~~RVV~IvGmGGIGKTTLAk~Vy~d 173 (1221)
T 1vt4_I 130 NVSRLQPYLKLRQALLEL-----------RPAKNVLIDGVLGSGKTWVALDVCLS 173 (1221)
T ss_dssp CCCCHHHHHHHHHHHHHC-----------CSSCEEEECCSTTSSHHHHHHHHHHH
T ss_pred CCCcHHHHHHHHHHHhcc-----------CCCeEEEEEcCCCccHHHHHHHHHHh
Confidence 389998888887655321 12456899999999999999999864
No 226
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=95.68 E-value=0.0093 Score=59.50 Aligned_cols=39 Identities=23% Similarity=0.206 Sum_probs=29.9
Q ss_pred CCCceeEecCCCCCChHHHHHHHHHHc---CCCEEEeechhh
Q 035561 486 RAPRGVLIVGERGTGKTSLALAIAAEA---RVPVVNVEAQEL 524 (979)
Q Consensus 486 ~~P~gVLL~GPPGTGKTtLArAlA~el---g~~~i~Is~sdL 524 (979)
..+.-++|.|+||+||||+++.+|..+ +.++..+++..+
T Consensus 11 ~~~~~i~l~G~~GsGKsT~~~~L~~~l~~~~~~~~~~~~d~~ 52 (186)
T 2yvu_A 11 EKGIVVWLTGLPGSGKTTIATRLADLLQKEGYRVEVLDGDWA 52 (186)
T ss_dssp SCCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEHHHH
T ss_pred CCCcEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEeeHHHH
Confidence 345678999999999999999999987 445555655443
No 227
>1g5t_A COB(I)alamin adenosyltransferase; P-loop protein, cobalamin biosynthesis, RECA fold; HET: ATP; 1.80A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1g5r_A* 1g64_A*
Probab=95.67 E-value=0.029 Score=58.01 Aligned_cols=69 Identities=17% Similarity=0.220 Sum_probs=45.6
Q ss_pred eeEecCCCCCChHHHHHHHHHHc---CCCEEEeech---------hhhhhhhc-------------c----cchhhHHHH
Q 035561 490 GVLIVGERGTGKTSLALAIAAEA---RVPVVNVEAQ---------ELEAGLWV-------------G----QSASNVREL 540 (979)
Q Consensus 490 gVLL~GPPGTGKTtLArAlA~el---g~~~i~Is~s---------dL~~~~~v-------------G----~~~~~Ir~l 540 (979)
.|++|+++|.||||+|-.+|-.+ |..+..+... .++ ..+. . ......+..
T Consensus 30 ~i~v~tG~GkGKTTaA~GlalRA~g~G~rV~~vQF~Kg~~~~gE~~~l-~~L~v~~~~~g~gf~~~~~~~~~~~~~a~~~ 108 (196)
T 1g5t_A 30 IIIVFTGNGKGKTTAAFGTAARAVGHGKNVGVVQFIKGTWPNGERNLL-EPHGVEFQVMATGFTWETQNREADTAACMAV 108 (196)
T ss_dssp CEEEEESSSSCHHHHHHHHHHHHHHTTCCEEEEESSCCSSCCHHHHHH-GGGTCEEEECCTTCCCCGGGHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEEeeCCCCCccHHHHH-HhCCcEEEEcccccccCCCCcHHHHHHHHHH
Confidence 58999999999999999998765 7777776322 122 2210 0 012345566
Q ss_pred HHHHHhc----CCeEEEEcCccc
Q 035561 541 FQTARDL----APVIIFVEDFDL 559 (979)
Q Consensus 541 F~~A~~~----aP~ILfIDEIDa 559 (979)
+..++.. ...+|+|||+-.
T Consensus 109 l~~a~~~l~~~~yDlvILDEi~~ 131 (196)
T 1g5t_A 109 WQHGKRMLADPLLDMVVLDELTY 131 (196)
T ss_dssp HHHHHHHTTCTTCSEEEEETHHH
T ss_pred HHHHHHHHhcCCCCEEEEeCCCc
Confidence 6666543 468999999954
No 228
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=95.65 E-value=0.0028 Score=64.13 Aligned_cols=28 Identities=11% Similarity=0.144 Sum_probs=24.4
Q ss_pred CCceeEecCCCCCChHHHHHHHHHHcCC
Q 035561 487 APRGVLIVGERGTGKTSLALAIAAEARV 514 (979)
Q Consensus 487 ~P~gVLL~GPPGTGKTtLArAlA~elg~ 514 (979)
.|.-|+|.|+|||||||+++.+++.++.
T Consensus 8 ~~~~I~l~G~~GsGKsT~~~~L~~~l~~ 35 (215)
T 1nn5_A 8 RGALIVLEGVDRAGKSTQSRKLVEALCA 35 (215)
T ss_dssp CCCEEEEEESTTSSHHHHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 3567999999999999999999998753
No 229
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=95.64 E-value=0.0055 Score=65.50 Aligned_cols=33 Identities=24% Similarity=0.424 Sum_probs=28.7
Q ss_pred CceeEecCCCCCChHHHHHHHHHHcCCCEEEee
Q 035561 488 PRGVLIVGERGTGKTSLALAIAAEARVPVVNVE 520 (979)
Q Consensus 488 P~gVLL~GPPGTGKTtLArAlA~elg~~~i~Is 520 (979)
...|.|.|++||||||+++.+|+.+|.+++..+
T Consensus 48 g~~i~l~G~~GsGKSTl~~~La~~lg~~~~d~d 80 (250)
T 3nwj_A 48 GRSMYLVGMMGSGKTTVGKIMARSLGYTFFDCD 80 (250)
T ss_dssp TCCEEEECSTTSCHHHHHHHHHHHHTCEEEEHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhcCCcEEeCc
Confidence 346999999999999999999999998877543
No 230
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=95.63 E-value=0.0078 Score=66.70 Aligned_cols=70 Identities=16% Similarity=0.240 Sum_probs=48.2
Q ss_pred ceeEecCCCCCChHHHHHHHHHHcC--CCEEEeechhhhh-h---h---hcccchhhHHHHHHHHHhcCCeEEEEcCcc
Q 035561 489 RGVLIVGERGTGKTSLALAIAAEAR--VPVVNVEAQELEA-G---L---WVGQSASNVRELFQTARDLAPVIIFVEDFD 558 (979)
Q Consensus 489 ~gVLL~GPPGTGKTtLArAlA~elg--~~~i~Is~sdL~~-~---~---~vG~~~~~Ir~lF~~A~~~aP~ILfIDEID 558 (979)
..+++.||+|+||||+++++++... ...+.++...... . . +...+....+..+..|....|.+|++||.-
T Consensus 172 ~~v~i~G~~GsGKTTll~~l~g~~~~~~g~i~i~~~~e~~~~~~~~~i~~~~ggg~~~r~~la~aL~~~p~ilildE~~ 250 (330)
T 2pt7_A 172 KNVIVCGGTGSGKTTYIKSIMEFIPKEERIISIEDTEEIVFKHHKNYTQLFFGGNITSADCLKSCLRMRPDRIILGELR 250 (330)
T ss_dssp CCEEEEESTTSCHHHHHHHGGGGSCTTSCEEEEESSCCCCCSSCSSEEEEECBTTBCHHHHHHHHTTSCCSEEEECCCC
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCcCCCcEEEECCeeccccccchhEEEEEeCCChhHHHHHHHHhhhCCCEEEEcCCC
Confidence 4699999999999999999999864 3345555432110 0 0 110033456777788878899999999974
No 231
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=95.63 E-value=0.006 Score=62.49 Aligned_cols=31 Identities=29% Similarity=0.405 Sum_probs=26.3
Q ss_pred CceeEecCCCCCChHHHHHHHHHHcCCCEEEe
Q 035561 488 PRGVLIVGERGTGKTSLALAIAAEARVPVVNV 519 (979)
Q Consensus 488 P~gVLL~GPPGTGKTtLArAlA~elg~~~i~I 519 (979)
|.-|.|.|++||||||+++.++. +|.+++..
T Consensus 4 ~~~I~i~G~~GSGKST~~~~L~~-lg~~~id~ 34 (218)
T 1vht_A 4 RYIVALTGGIGSGKSTVANAFAD-LGINVIDA 34 (218)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHH-TTCEEEEH
T ss_pred ceEEEEECCCCCCHHHHHHHHHH-cCCEEEEc
Confidence 45688999999999999999998 88766543
No 232
>2h92_A Cytidylate kinase; rossmann fold, transferase; HET: C5P PG4; 2.30A {Staphylococcus aureus}
Probab=95.59 E-value=0.0061 Score=62.29 Aligned_cols=32 Identities=22% Similarity=0.359 Sum_probs=27.9
Q ss_pred CceeEecCCCCCChHHHHHHHHHHcCCCEEEe
Q 035561 488 PRGVLIVGERGTGKTSLALAIAAEARVPVVNV 519 (979)
Q Consensus 488 P~gVLL~GPPGTGKTtLArAlA~elg~~~i~I 519 (979)
|..+.|.|++||||||+++.++..+|.+++..
T Consensus 3 ~~~i~i~G~~gsGkst~~~~l~~~~g~~~~~~ 34 (219)
T 2h92_A 3 AINIALDGPAAAGKSTIAKRVASELSMIYVDT 34 (219)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHHHTTCEEEEH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHhcCCceecC
Confidence 44689999999999999999999999877654
No 233
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=95.58 E-value=0.0074 Score=61.75 Aligned_cols=40 Identities=18% Similarity=0.384 Sum_probs=32.1
Q ss_pred CCCCceeEecCCCCCChHHHHHHHHHHc----CCCEEEeechhh
Q 035561 485 ARAPRGVLIVGERGTGKTSLALAIAAEA----RVPVVNVEAQEL 524 (979)
Q Consensus 485 ~~~P~gVLL~GPPGTGKTtLArAlA~el----g~~~i~Is~sdL 524 (979)
...+.-++|.|+||+||||+++.+++.+ |.+++.+++..+
T Consensus 22 ~~~~~~i~~~G~~GsGKsT~~~~l~~~l~~~~g~~~~~~~~d~~ 65 (211)
T 1m7g_A 22 NQRGLTIWLTGLSASGKSTLAVELEHQLVRDRRVHAYRLDGDNI 65 (211)
T ss_dssp TSSCEEEEEECSTTSSHHHHHHHHHHHHHHHHCCCEEEECHHHH
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHHHHhccccCCcEEEECChHH
Confidence 3445678999999999999999999876 466888876554
No 234
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=95.57 E-value=0.0051 Score=68.65 Aligned_cols=38 Identities=26% Similarity=0.505 Sum_probs=32.8
Q ss_pred CceeEecCCCCCChHHHHHHHHHHcCCCEEEeechhhh
Q 035561 488 PRGVLIVGERGTGKTSLALAIAAEARVPVVNVEAQELE 525 (979)
Q Consensus 488 P~gVLL~GPPGTGKTtLArAlA~elg~~~i~Is~sdL~ 525 (979)
++-|+|.||+|||||+|+..||+.++.++++.+.-.+.
T Consensus 40 ~~lIvI~GPTgsGKTtLa~~LA~~l~~eiIs~Ds~qvY 77 (339)
T 3a8t_A 40 EKLLVLMGATGTGKSRLSIDLAAHFPLEVINSDKMQVY 77 (339)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHTTSCEEEEECCSSTTB
T ss_pred CceEEEECCCCCCHHHHHHHHHHHCCCcEEcccccccc
Confidence 45689999999999999999999999888887766543
No 235
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=95.54 E-value=0.0046 Score=66.48 Aligned_cols=30 Identities=23% Similarity=0.342 Sum_probs=24.7
Q ss_pred CceeEecCCCCCChHHHHHHHHHHc-CCCEE
Q 035561 488 PRGVLIVGERGTGKTSLALAIAAEA-RVPVV 517 (979)
Q Consensus 488 P~gVLL~GPPGTGKTtLArAlA~el-g~~~i 517 (979)
|.-|+|.|+|||||||+++.++..+ +.+++
T Consensus 2 ~~~I~l~G~~GsGKST~a~~L~~~~~~~~~i 32 (301)
T 1ltq_A 2 KKIILTIGCPGSGKSTWAREFIAKNPGFYNI 32 (301)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHSTTEEEE
T ss_pred CeEEEEECCCCCCHHHHHHHHHHhCCCcEEe
Confidence 4568999999999999999999974 54443
No 236
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=95.52 E-value=0.0095 Score=60.60 Aligned_cols=29 Identities=21% Similarity=0.306 Sum_probs=25.1
Q ss_pred CCCCceeEecCCCCCChHHHHHHHHHHcC
Q 035561 485 ARAPRGVLIVGERGTGKTSLALAIAAEAR 513 (979)
Q Consensus 485 ~~~P~gVLL~GPPGTGKTtLArAlA~elg 513 (979)
...+.-++|.||||+||||+++.++..++
T Consensus 9 ~~~~~~i~l~G~sGsGKsTl~~~L~~~~~ 37 (204)
T 2qor_A 9 MARIPPLVVCGPSGVGKGTLIKKVLSEFP 37 (204)
T ss_dssp CCCCCCEEEECCTTSCHHHHHHHHHHHCT
T ss_pred cccCCEEEEECCCCCCHHHHHHHHHHhCc
Confidence 34556789999999999999999999885
No 237
>3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1}
Probab=95.43 E-value=0.024 Score=65.38 Aligned_cols=38 Identities=29% Similarity=0.211 Sum_probs=31.1
Q ss_pred CCCCCceeEecCCCCCChHHHHHHHHHHc---CCCEEEeec
Q 035561 484 GARAPRGVLIVGERGTGKTSLALAIAAEA---RVPVVNVEA 521 (979)
Q Consensus 484 G~~~P~gVLL~GPPGTGKTtLArAlA~el---g~~~i~Is~ 521 (979)
|+.+..-++|.|+||+|||++|..+|..+ |.++++++.
T Consensus 193 Gl~~G~liiIaG~pG~GKTtlal~ia~~~a~~g~~vl~fSl 233 (444)
T 3bgw_A 193 GYKRRNFVLIAARPSMGKTAFALKQAKNMSDNDDVVNLHSL 233 (444)
T ss_dssp SBCSSCEEEEEECSSSSHHHHHHHHHHHHHHTTCEEEEECS
T ss_pred CCCCCcEEEEEeCCCCChHHHHHHHHHHHHHcCCEEEEEEC
Confidence 56666679999999999999999888765 667777765
No 238
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=95.42 E-value=0.0052 Score=62.40 Aligned_cols=32 Identities=25% Similarity=0.287 Sum_probs=25.7
Q ss_pred CCceeEecCCCCCChHHHHHHHHHHc-CCCEEE
Q 035561 487 APRGVLIVGERGTGKTSLALAIAAEA-RVPVVN 518 (979)
Q Consensus 487 ~P~gVLL~GPPGTGKTtLArAlA~el-g~~~i~ 518 (979)
.+.-+.|.|+||+||||+++.+++.+ +++++.
T Consensus 20 ~~~~i~i~G~~GsGKSTl~~~L~~~~~~~~~i~ 52 (207)
T 2qt1_A 20 KTFIIGISGVTNSGKTTLAKNLQKHLPNCSVIS 52 (207)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHTTSTTEEEEE
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHhcCCcEEEe
Confidence 34457899999999999999999987 555443
No 239
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=95.39 E-value=0.012 Score=60.02 Aligned_cols=28 Identities=29% Similarity=0.418 Sum_probs=24.0
Q ss_pred CCCceeEecCCCCCChHHHHHHHHHHcC
Q 035561 486 RAPRGVLIVGERGTGKTSLALAIAAEAR 513 (979)
Q Consensus 486 ~~P~gVLL~GPPGTGKTtLArAlA~elg 513 (979)
+.+.-+.|.||+|+|||||++++++.+.
T Consensus 20 ~~g~~v~I~G~sGsGKSTl~~~l~~~~~ 47 (208)
T 3c8u_A 20 PGRQLVALSGAPGSGKSTLSNPLAAALS 47 (208)
T ss_dssp CSCEEEEEECCTTSCTHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHh
Confidence 3445678999999999999999999875
No 240
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=95.38 E-value=0.01 Score=61.88 Aligned_cols=33 Identities=21% Similarity=0.280 Sum_probs=28.4
Q ss_pred CCCceeEecCCCCCChHHHHHHHHHHcCCCEEE
Q 035561 486 RAPRGVLIVGERGTGKTSLALAIAAEARVPVVN 518 (979)
Q Consensus 486 ~~P~gVLL~GPPGTGKTtLArAlA~elg~~~i~ 518 (979)
..+..+.|.|++||||||+++.+|+.+|.+++.
T Consensus 14 ~~~~~i~i~G~~gsGKst~~~~l~~~lg~~~~d 46 (236)
T 1q3t_A 14 MKTIQIAIDGPASSGKSTVAKIIAKDFGFTYLD 46 (236)
T ss_dssp CCCCEEEEECSSCSSHHHHHHHHHHHHCCEEEE
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHHHcCCceec
Confidence 345568999999999999999999999987654
No 241
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=95.35 E-value=0.058 Score=59.82 Aligned_cols=27 Identities=30% Similarity=0.414 Sum_probs=24.0
Q ss_pred CCCceeEecCCCCCChHHHHHHHHHHc
Q 035561 486 RAPRGVLIVGERGTGKTSLALAIAAEA 512 (979)
Q Consensus 486 ~~P~gVLL~GPPGTGKTtLArAlA~el 512 (979)
..|.-+.|.||+|+||||+++.+|+.+
T Consensus 127 ~~g~vi~lvG~nGaGKTTll~~Lag~l 153 (328)
T 3e70_C 127 EKPYVIMFVGFNGSGKTTTIAKLANWL 153 (328)
T ss_dssp CSSEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 456778999999999999999999876
No 242
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=95.29 E-value=0.0092 Score=59.95 Aligned_cols=27 Identities=19% Similarity=0.303 Sum_probs=23.6
Q ss_pred CCCceeEecCCCCCChHHHHHHHHHHc
Q 035561 486 RAPRGVLIVGERGTGKTSLALAIAAEA 512 (979)
Q Consensus 486 ~~P~gVLL~GPPGTGKTtLArAlA~el 512 (979)
..+.-+.|.||+||||||+++.+++..
T Consensus 4 ~~g~~i~l~G~~GsGKSTl~~~L~~~~ 30 (207)
T 2j41_A 4 EKGLLIVLSGPSGVGKGTVRKRIFEDP 30 (207)
T ss_dssp CCCCEEEEECSTTSCHHHHHHHHHHCT
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHhh
Confidence 345668899999999999999999876
No 243
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=95.27 E-value=0.011 Score=62.49 Aligned_cols=29 Identities=24% Similarity=0.352 Sum_probs=26.2
Q ss_pred ceeEecCCCCCChHHHHHHHHHHcCCCEE
Q 035561 489 RGVLIVGERGTGKTSLALAIAAEARVPVV 517 (979)
Q Consensus 489 ~gVLL~GPPGTGKTtLArAlA~elg~~~i 517 (979)
..|.|.||+||||||+++.+|+.+|.+++
T Consensus 28 ~~I~I~G~~GsGKSTl~k~La~~Lg~~~~ 56 (252)
T 4e22_A 28 PVITVDGPSGAGKGTLCKALAESLNWRLL 56 (252)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHTTCEEE
T ss_pred cEEEEECCCCCCHHHHHHHHHHhcCCCcC
Confidence 45889999999999999999999998765
No 244
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=95.23 E-value=0.0077 Score=65.03 Aligned_cols=34 Identities=21% Similarity=0.330 Sum_probs=27.5
Q ss_pred CceeEecCCCCCChHHHHHHHHHHcCCCEEEeechhh
Q 035561 488 PRGVLIVGERGTGKTSLALAIAAEARVPVVNVEAQEL 524 (979)
Q Consensus 488 P~gVLL~GPPGTGKTtLArAlA~elg~~~i~Is~sdL 524 (979)
|.-|.|+|+|||||||+|+.++ .+|.+++ ++.++
T Consensus 75 ~~iI~I~G~~GSGKSTva~~La-~lg~~~i--d~D~~ 108 (281)
T 2f6r_A 75 LYVLGLTGISGSGKSSVAQRLK-NLGAYII--DSDHL 108 (281)
T ss_dssp CEEEEEEECTTSCHHHHHHHHH-HHTCEEE--EHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHHH-HCCCcEE--ehhHH
Confidence 4568999999999999999999 6787665 44444
No 245
>3gmt_A Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucleotide biosynthesis, nucleotide-BIND transferase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B}
Probab=95.21 E-value=0.034 Score=58.80 Aligned_cols=33 Identities=21% Similarity=0.447 Sum_probs=27.6
Q ss_pred eEecCCCCCChHHHHHHHHHHcCCCEEEeechhhh
Q 035561 491 VLIVGERGTGKTSLALAIAAEARVPVVNVEAQELE 525 (979)
Q Consensus 491 VLL~GPPGTGKTtLArAlA~elg~~~i~Is~sdL~ 525 (979)
+-|.||||+||||+|+.+++.++.+.+ +..+++
T Consensus 11 ~~~~G~pGsGKsT~a~~L~~~~g~~~i--s~gdll 43 (230)
T 3gmt_A 11 LILLGAPGAGKGTQANFIKEKFGIPQI--STGDML 43 (230)
T ss_dssp EEEECCTTSCHHHHHHHHHHHHTCCEE--CHHHHH
T ss_pred eeeECCCCCCHHHHHHHHHHHhCCCee--echHHH
Confidence 668999999999999999999998866 444544
No 246
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=95.21 E-value=0.011 Score=59.15 Aligned_cols=26 Identities=12% Similarity=0.433 Sum_probs=22.8
Q ss_pred CceeEecCCCCCChHHHHHHHHHHcC
Q 035561 488 PRGVLIVGERGTGKTSLALAIAAEAR 513 (979)
Q Consensus 488 P~gVLL~GPPGTGKTtLArAlA~elg 513 (979)
.+-+.|.||+|+|||||++.+++...
T Consensus 5 g~~i~i~GpsGsGKSTL~~~L~~~~~ 30 (180)
T 1kgd_A 5 RKTLVLLGAHGVGRRHIKNTLITKHP 30 (180)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHCT
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhCC
Confidence 35688999999999999999999764
No 247
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=95.20 E-value=0.03 Score=55.28 Aligned_cols=47 Identities=26% Similarity=0.373 Sum_probs=29.2
Q ss_pred cHHHHHHHHHHHHhhcChhHHHhcCCCCCceeEecCCCCCChHHHHHHHHHHc
Q 035561 460 VESMREEINEVVAFLQNPSAFQEMGARAPRGVLIVGERGTGKTSLALAIAAEA 512 (979)
Q Consensus 460 leevke~L~eiV~~L~~p~~f~~lG~~~P~gVLL~GPPGTGKTtLArAlA~el 512 (979)
...+.+.+.+.+..+... ....+..|++.|++|+|||+|+.++++..
T Consensus 26 ~~~l~~~l~~~~~~~~~~------~~~~~~~i~vvG~~g~GKSsll~~l~~~~ 72 (193)
T 2ged_A 26 ISQWREWIDEKLGGGSGG------GGSYQPSIIIAGPQNSGKTSLLTLLTTDS 72 (193)
T ss_dssp CHHHHHHHHHHC--------------CCCCEEEEECCTTSSHHHHHHHHHHSS
T ss_pred HHHHHHHHHHHHHhhcCC------CCCCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 455555555444332211 12334579999999999999999998754
No 248
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=95.20 E-value=0.018 Score=59.42 Aligned_cols=27 Identities=15% Similarity=0.486 Sum_probs=23.4
Q ss_pred CCceeEecCCCCCChHHHHHHHHHHcC
Q 035561 487 APRGVLIVGERGTGKTSLALAIAAEAR 513 (979)
Q Consensus 487 ~P~gVLL~GPPGTGKTtLArAlA~elg 513 (979)
.++-+.|.||+|+|||||++++++...
T Consensus 18 ~g~~ivl~GPSGaGKsTL~~~L~~~~~ 44 (197)
T 3ney_A 18 GRKTLVLIGASGVGRSHIKNALLSQNP 44 (197)
T ss_dssp SCCEEEEECCTTSSHHHHHHHHHHHCT
T ss_pred CCCEEEEECcCCCCHHHHHHHHHhhCC
Confidence 345688999999999999999998764
No 249
>1x6v_B Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthethase 1; transferase, ATP sulfurylase, APS kinase, PAPS; HET: ADP; 1.75A {Homo sapiens} SCOP: b.122.1.3 c.26.1.5 c.37.1.4 PDB: 1xjq_B* 1xnj_B* 2qjf_A* 2ofx_A* 2ofw_A*
Probab=95.17 E-value=0.029 Score=67.48 Aligned_cols=38 Identities=21% Similarity=0.442 Sum_probs=33.4
Q ss_pred CCceeEecCCCCCChHHHHHHHHHHc---CCCEEEeechhh
Q 035561 487 APRGVLIVGERGTGKTSLALAIAAEA---RVPVVNVEAQEL 524 (979)
Q Consensus 487 ~P~gVLL~GPPGTGKTtLArAlA~el---g~~~i~Is~sdL 524 (979)
.+.-|+|+|+|||||||+|++++..+ |.+++.+++..+
T Consensus 51 ~g~lIvLtGlsGSGKSTlAr~La~~L~~~G~~~v~lDgD~i 91 (630)
T 1x6v_B 51 RGCTVWLTGLSGAGKTTVSMALEEYLVCHGIPCYTLDGDNI 91 (630)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEESHHHH
T ss_pred CCCEEEEEeCCCCCHHHHHHHHHHHHHhcCCeEEEechHHh
Confidence 45679999999999999999999998 999999886544
No 250
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=95.16 E-value=0.012 Score=65.18 Aligned_cols=37 Identities=24% Similarity=0.324 Sum_probs=31.0
Q ss_pred ceeEecCCCCCChHHHHHHHHHHcCCCEEEeechhhh
Q 035561 489 RGVLIVGERGTGKTSLALAIAAEARVPVVNVEAQELE 525 (979)
Q Consensus 489 ~gVLL~GPPGTGKTtLArAlA~elg~~~i~Is~sdL~ 525 (979)
.-++|.||+|||||+|+..+|..++..+++.+.-.+.
T Consensus 4 ~~i~i~GptgsGKt~la~~La~~~~~~iis~Ds~QvY 40 (322)
T 3exa_A 4 KLVAIVGPTAVGKTKTSVMLAKRLNGEVISGDSMQVY 40 (322)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHTTTEEEEECCGGGGB
T ss_pred cEEEEECCCcCCHHHHHHHHHHhCccceeecCcccce
Confidence 4578999999999999999999998877777665554
No 251
>1q57_A DNA primase/helicase; dntpase, DNA replication, transferase; HET: DNA; 3.45A {Enterobacteria phage T7} SCOP: c.37.1.11 e.13.1.2
Probab=95.11 E-value=0.028 Score=65.36 Aligned_cols=38 Identities=16% Similarity=0.092 Sum_probs=31.1
Q ss_pred CCCCCceeEecCCCCCChHHHHHHHHHHc----CCCEEEeec
Q 035561 484 GARAPRGVLIVGERGTGKTSLALAIAAEA----RVPVVNVEA 521 (979)
Q Consensus 484 G~~~P~gVLL~GPPGTGKTtLArAlA~el----g~~~i~Is~ 521 (979)
|+....-++|.|+||+|||+++..+|..+ |.++++++.
T Consensus 238 Gl~~G~l~li~G~pG~GKT~lal~~a~~~a~~~g~~vl~~s~ 279 (503)
T 1q57_A 238 GARGGEVIMVTSGSGMVMSTFVRQQALQWGTAMGKKVGLAML 279 (503)
T ss_dssp CCCTTCEEEEEESSCHHHHHHHHHHHHHHTTTSCCCEEEEES
T ss_pred ccCCCeEEEEeecCCCCchHHHHHHHHHHHHhcCCcEEEEec
Confidence 56666779999999999999999998765 457777765
No 252
>1w36_D RECD, exodeoxyribonuclease V alpha chain; recombination, helicase, hydrolase, DNA repair; HET: DNA; 3.1A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19 PDB: 3k70_D*
Probab=95.00 E-value=0.06 Score=64.45 Aligned_cols=24 Identities=38% Similarity=0.443 Sum_probs=20.1
Q ss_pred ceeEecCCCCCChHHHHHHHHHHc
Q 035561 489 RGVLIVGERGTGKTSLALAIAAEA 512 (979)
Q Consensus 489 ~gVLL~GPPGTGKTtLArAlA~el 512 (979)
+.++++||||||||+++..+...+
T Consensus 165 ~~~vi~G~pGTGKTt~l~~ll~~l 188 (608)
T 1w36_D 165 RISVISGGPGTGKTTTVAKLLAAL 188 (608)
T ss_dssp SEEEEECCTTSTHHHHHHHHHHHH
T ss_pred CCEEEEeCCCCCHHHHHHHHHHHH
Confidence 459999999999999888776554
No 253
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=94.93 E-value=0.0078 Score=68.68 Aligned_cols=32 Identities=28% Similarity=0.309 Sum_probs=27.2
Q ss_pred CCCceeEecCCCCCChHHHHHHHHHHcCCCEE
Q 035561 486 RAPRGVLIVGERGTGKTSLALAIAAEARVPVV 517 (979)
Q Consensus 486 ~~P~gVLL~GPPGTGKTtLArAlA~elg~~~i 517 (979)
..|.-|+|+|+|||||||+|+.++..++..++
T Consensus 256 ~~~~lIil~G~pGSGKSTla~~L~~~~~~~~i 287 (416)
T 3zvl_A 256 PNPEVVVAVGFPGAGKSTFIQEHLVSAGYVHV 287 (416)
T ss_dssp SSCCEEEEESCTTSSHHHHHHHHTGGGTCEEC
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHhcCcEEE
Confidence 34667999999999999999999999876544
No 254
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=94.87 E-value=0.015 Score=58.07 Aligned_cols=34 Identities=24% Similarity=0.337 Sum_probs=25.9
Q ss_pred eeEecCCCCCChHHHHHHHHHHcCCCEEEeechhh
Q 035561 490 GVLIVGERGTGKTSLALAIAAEARVPVVNVEAQEL 524 (979)
Q Consensus 490 gVLL~GPPGTGKTtLArAlA~elg~~~i~Is~sdL 524 (979)
-+.|.||+|+||||+++.+++..+. .+.+++.++
T Consensus 4 ii~l~G~~GaGKSTl~~~L~~~~~g-~~~i~~d~~ 37 (189)
T 2bdt_A 4 LYIITGPAGVGKSTTCKRLAAQLDN-SAYIEGDII 37 (189)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHSSS-EEEEEHHHH
T ss_pred EEEEECCCCCcHHHHHHHHhcccCC-eEEEcccch
Confidence 4789999999999999999986543 244555544
No 255
>2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B*
Probab=94.82 E-value=0.06 Score=66.27 Aligned_cols=57 Identities=18% Similarity=0.155 Sum_probs=34.3
Q ss_pred CCCCCcccCcHHHHHHHHHHHHhhcChh-----HHHhcCCCCCceeEecCCCCCChHHHHHHHHHH
Q 035561 451 PIPLKDFASVESMREEINEVVAFLQNPS-----AFQEMGARAPRGVLIVGERGTGKTSLALAIAAE 511 (979)
Q Consensus 451 ~~~f~DIvGleevke~L~eiV~~L~~p~-----~f~~lG~~~P~gVLL~GPPGTGKTtLArAlA~e 511 (979)
..+|+++.-.+...+.|.+.- ..|. .+.. .+.....+++.||+|||||+++..++..
T Consensus 71 ~~~f~~~~l~~~~~~~l~~r~---~lP~~~q~~~i~~-~l~~~~~vii~gpTGSGKTtllp~ll~~ 132 (773)
T 2xau_A 71 INPFTGREFTPKYVDILKIRR---ELPVHAQRDEFLK-LYQNNQIMVFVGETGSGKTTQIPQFVLF 132 (773)
T ss_dssp BCTTTCSBCCHHHHHHHHHHT---TSGGGGGHHHHHH-HHHHCSEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCCccccCCCHHHHHHHHHhh---cCChHHHHHHHHH-HHhCCCeEEEECCCCCCHHHHHHHHHHH
Confidence 346888776666666655332 1121 1100 1122346999999999999987777654
No 256
>1hv8_A Putative ATP-dependent RNA helicase MJ0669; RNA-binding protein, ATPase, RNA binding protein; 3.00A {Methanocaldococcus jannaschii} SCOP: c.37.1.19 c.37.1.19
Probab=94.82 E-value=0.093 Score=56.67 Aligned_cols=69 Identities=12% Similarity=0.164 Sum_probs=41.1
Q ss_pred CCCCCcccCcHHHHHHHHHHHHhhcChhHHHhcCC----CCCceeEecCCCCCChHHHHHHHHHHc-----CCCEEEeec
Q 035561 451 PIPLKDFASVESMREEINEVVAFLQNPSAFQEMGA----RAPRGVLIVGERGTGKTSLALAIAAEA-----RVPVVNVEA 521 (979)
Q Consensus 451 ~~~f~DIvGleevke~L~eiV~~L~~p~~f~~lG~----~~P~gVLL~GPPGTGKTtLArAlA~el-----g~~~i~Is~ 521 (979)
..+|+++.-.+.+.+.|.+. -+..+..++...+ ...+++++.+|+|+|||+.+-..+.+. +...+.+..
T Consensus 5 ~~~f~~~~l~~~~~~~l~~~--g~~~~~~~Q~~~i~~~~~~~~~~l~~~~TGsGKT~~~~~~~~~~~~~~~~~~~lil~P 82 (367)
T 1hv8_A 5 YMNFNELNLSDNILNAIRNK--GFEKPTDIQMKVIPLFLNDEYNIVAQARTGSGKTASFAIPLIELVNENNGIEAIILTP 82 (367)
T ss_dssp CCCGGGSSCCHHHHHHHHHH--TCCSCCHHHHHHHHHHHHTCSEEEEECCSSSSHHHHHHHHHHHHSCSSSSCCEEEECS
T ss_pred cCchhhcCCCHHHHHHHHHc--CCCCCCHHHHHHHHHHhCCCCCEEEECCCCChHHHHHHHHHHHHhcccCCCcEEEEcC
Confidence 35688887777777777642 1222322222211 123689999999999999866555443 444555443
No 257
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=94.80 E-value=0.014 Score=65.16 Aligned_cols=34 Identities=24% Similarity=0.394 Sum_probs=28.9
Q ss_pred ceeEecCCCCCChHHHHHHHHHHcCCCEEEeech
Q 035561 489 RGVLIVGERGTGKTSLALAIAAEARVPVVNVEAQ 522 (979)
Q Consensus 489 ~gVLL~GPPGTGKTtLArAlA~elg~~~i~Is~s 522 (979)
.-|+|.||+|||||++|+.+|..++..+++.+.-
T Consensus 8 ~lI~I~GptgSGKTtla~~La~~l~~~iis~Ds~ 41 (340)
T 3d3q_A 8 FLIVIVGPTASGKTELSIEVAKKFNGEIISGDSM 41 (340)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHTTEEEEECCSS
T ss_pred ceEEEECCCcCcHHHHHHHHHHHcCCceeccccc
Confidence 4688999999999999999999999766665543
No 258
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=94.76 E-value=0.12 Score=56.34 Aligned_cols=35 Identities=29% Similarity=0.240 Sum_probs=27.1
Q ss_pred CCceeEecCCCCCChHHHHHHHHHHc---CCCEEEeec
Q 035561 487 APRGVLIVGERGTGKTSLALAIAAEA---RVPVVNVEA 521 (979)
Q Consensus 487 ~P~gVLL~GPPGTGKTtLArAlA~el---g~~~i~Is~ 521 (979)
.+..+.+.|++|+||||++..+|..+ +..+..+++
T Consensus 97 ~~~~i~i~g~~G~GKTT~~~~la~~~~~~~~~v~l~~~ 134 (295)
T 1ls1_A 97 DRNLWFLVGLQGSGKTTTAAKLALYYKGKGRRPLLVAA 134 (295)
T ss_dssp SSEEEEEECCTTTTHHHHHHHHHHHHHHTTCCEEEEEC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEecC
Confidence 45668888999999999999999865 455555544
No 259
>1t6n_A Probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; HET: FLC; 1.94A {Homo sapiens} SCOP: c.37.1.19
Probab=94.75 E-value=0.17 Score=51.32 Aligned_cols=60 Identities=20% Similarity=0.227 Sum_probs=37.0
Q ss_pred CCCCCcccCcHHHHHHHHHHHHhhcChhHHHhcCC---CCCceeEecCCCCCChHHHHHHHHHHc
Q 035561 451 PIPLKDFASVESMREEINEVVAFLQNPSAFQEMGA---RAPRGVLIVGERGTGKTSLALAIAAEA 512 (979)
Q Consensus 451 ~~~f~DIvGleevke~L~eiV~~L~~p~~f~~lG~---~~P~gVLL~GPPGTGKTtLArAlA~el 512 (979)
..+|+|+.-.+++.+.|.+. -+..+..++...+ ...+.+++.+|+|+|||..+-..+-..
T Consensus 13 ~~~f~~~~l~~~l~~~l~~~--g~~~~~~~Q~~~i~~~~~~~~~li~~~TGsGKT~~~~~~~~~~ 75 (220)
T 1t6n_A 13 SSGFRDFLLKPELLRAIVDC--GFEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLATLQQ 75 (220)
T ss_dssp -CCSTTSCCCHHHHHHHHHT--TCCCCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCCHhhcCCCHHHHHHHHHC--CCCCCCHHHHHHHHHHhCCCCEEEECCCCCchhhhhhHHHHHh
Confidence 35699987777777777641 1333333332211 123569999999999998766555443
No 260
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=94.73 E-value=0.017 Score=57.91 Aligned_cols=33 Identities=24% Similarity=0.338 Sum_probs=25.7
Q ss_pred CceeEecCCCCCChHHHHHHHHHHcCCCEEEeech
Q 035561 488 PRGVLIVGERGTGKTSLALAIAAEARVPVVNVEAQ 522 (979)
Q Consensus 488 P~gVLL~GPPGTGKTtLArAlA~elg~~~i~Is~s 522 (979)
+.-+.|.||+|+||||+++.+++... -+.++..
T Consensus 7 g~ii~l~Gp~GsGKSTl~~~L~~~~~--~~~~~~~ 39 (205)
T 3tr0_A 7 ANLFIISAPSGAGKTSLVRALVKALA--EIKISIS 39 (205)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHSS--SEEECCC
T ss_pred CcEEEEECcCCCCHHHHHHHHHhhCC--CeEEece
Confidence 34578999999999999999999863 3444443
No 261
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=94.73 E-value=0.012 Score=59.68 Aligned_cols=27 Identities=37% Similarity=0.426 Sum_probs=23.8
Q ss_pred CCceeEecCCCCCChHHHHHHHHHHcC
Q 035561 487 APRGVLIVGERGTGKTSLALAIAAEAR 513 (979)
Q Consensus 487 ~P~gVLL~GPPGTGKTtLArAlA~elg 513 (979)
.+.-+.|.||+||||||+++.+++.++
T Consensus 5 ~~~~i~i~G~~GsGKSTl~~~l~~~~~ 31 (211)
T 3asz_A 5 KPFVIGIAGGTASGKTTLAQALARTLG 31 (211)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHHHHG
T ss_pred CcEEEEEECCCCCCHHHHHHHHHHHhC
Confidence 345578999999999999999999887
No 262
>2gxq_A Heat resistant RNA dependent ATPase; RNA helicase, atomic resolution, AMP complex, ribosome biogenesis, thermophilic, hydrolase; HET: AMP; 1.20A {Thermus thermophilus HB27} PDB: 2gxs_A* 2gxu_A 3mwj_A 3mwk_A* 3mwl_A* 3nbf_A* 3nej_A
Probab=94.72 E-value=0.097 Score=52.37 Aligned_cols=57 Identities=25% Similarity=0.286 Sum_probs=30.3
Q ss_pred CCCcccCcHHHHHHHHHHHHhhcChhHHHhcCC---CCCceeEecCCCCCChHHHHH-HHHHH
Q 035561 453 PLKDFASVESMREEINEVVAFLQNPSAFQEMGA---RAPRGVLIVGERGTGKTSLAL-AIAAE 511 (979)
Q Consensus 453 ~f~DIvGleevke~L~eiV~~L~~p~~f~~lG~---~~P~gVLL~GPPGTGKTtLAr-AlA~e 511 (979)
+|+++.-.+++.+.|.+. -+..+..++...+ ...+++++.+|+|+|||..+- .+...
T Consensus 2 ~f~~~~l~~~l~~~l~~~--~~~~~~~~Q~~~i~~~~~~~~~li~~~TGsGKT~~~~~~~~~~ 62 (207)
T 2gxq_A 2 EFKDFPLKPEILEALHGR--GLTTPTPIQAAALPLALEGKDLIGQARTGTGKTLAFALPIAER 62 (207)
T ss_dssp CGGGSCCCHHHHHHHHHT--TCCSCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHH
T ss_pred ChhhcCCCHHHHHHHHHc--CCCCCCHHHHHHHHHHcCCCCEEEECCCCChHHHHHHHHHHHH
Confidence 356665555555555431 1222222222111 113569999999999998643 34443
No 263
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=94.70 E-value=0.074 Score=61.15 Aligned_cols=36 Identities=28% Similarity=0.367 Sum_probs=29.1
Q ss_pred CCceeEecCCCCCChHHHHHHHHHHc---CCCEEEeech
Q 035561 487 APRGVLIVGERGTGKTSLALAIAAEA---RVPVVNVEAQ 522 (979)
Q Consensus 487 ~P~gVLL~GPPGTGKTtLArAlA~el---g~~~i~Is~s 522 (979)
.|..|+++|+||+||||++..+|..+ |..+..+++.
T Consensus 98 ~~~vI~ivG~~GvGKTTla~~La~~l~~~G~kVllv~~D 136 (432)
T 2v3c_C 98 KQNVILLVGIQGSGKTTTAAKLARYIQKRGLKPALIAAD 136 (432)
T ss_dssp SCCCEEEECCSSSSTTHHHHHHHHHHHHHHCCEEEECCS
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEecc
Confidence 35679999999999999999999876 4566666653
No 264
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=94.70 E-value=0.019 Score=67.37 Aligned_cols=71 Identities=25% Similarity=0.388 Sum_probs=47.6
Q ss_pred CCceeEecCCCCCChHHHHHHHHHHcC--CCEEEeechh-hhhh--hh--------cccchhhHHHHHHHHHhcCCeEEE
Q 035561 487 APRGVLIVGERGTGKTSLALAIAAEAR--VPVVNVEAQE-LEAG--LW--------VGQSASNVRELFQTARDLAPVIIF 553 (979)
Q Consensus 487 ~P~gVLL~GPPGTGKTtLArAlA~elg--~~~i~Is~sd-L~~~--~~--------vG~~~~~Ir~lF~~A~~~aP~ILf 553 (979)
.+.++++.||+||||||+++++++... ...+.+.... +... .. .+...-.+.++...+....|.+++
T Consensus 259 ~g~~i~I~GptGSGKTTlL~aL~~~i~~~~giitied~~E~~~~~~~~v~~~~r~~~~~~~~~~~~~l~~~LR~~PD~ii 338 (511)
T 2oap_1 259 HKFSAIVVGETASGKTTTLNAIMMFIPPDAKVVSIEDTREIKLYHENWIAEVTRTGMGEGEIDMYDLLRAALRQRPDYII 338 (511)
T ss_dssp TTCCEEEEESTTSSHHHHHHHHGGGSCTTCCEEEEESSCCCCCCCSSEEEEECBCCSSSCCBCHHHHHHTTGGGCCSEEE
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhCCCCCCEEEEcCcccccCCCCCeEEEEeecccccCCcCHHHHHHHhhccCCCeEE
Confidence 345699999999999999999999874 3455555432 2100 00 011223455666677778999999
Q ss_pred EcCc
Q 035561 554 VEDF 557 (979)
Q Consensus 554 IDEI 557 (979)
++|+
T Consensus 339 vgEi 342 (511)
T 2oap_1 339 VGEV 342 (511)
T ss_dssp ESCC
T ss_pred eCCc
Confidence 9997
No 265
>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}
Probab=94.66 E-value=0.068 Score=59.60 Aligned_cols=38 Identities=26% Similarity=0.225 Sum_probs=30.6
Q ss_pred CCCCCceeEecCCCCCChHHHHHHHHHHc---CCCEEEeec
Q 035561 484 GARAPRGVLIVGERGTGKTSLALAIAAEA---RVPVVNVEA 521 (979)
Q Consensus 484 G~~~P~gVLL~GPPGTGKTtLArAlA~el---g~~~i~Is~ 521 (979)
|+.+..-++|.|+||+|||++|..+|..+ +.++.+++.
T Consensus 42 Gl~~G~LiiIaG~pG~GKTt~al~ia~~~a~~g~~Vl~fSl 82 (338)
T 4a1f_A 42 GFNKGSLVIIGARPSMGKTSLMMNMVLSALNDDRGVAVFSL 82 (338)
T ss_dssp SBCTTCEEEEEECTTSCHHHHHHHHHHHHHHTTCEEEEEES
T ss_pred CCCCCcEEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEEeC
Confidence 66666779999999999999999998764 667666654
No 266
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=94.65 E-value=0.098 Score=59.92 Aligned_cols=95 Identities=15% Similarity=0.252 Sum_probs=53.6
Q ss_pred CCCCCcccCcHHHHHHHHHHHHhhcChhHHHhcCCCCCceeEecCCCCCChHHHHHHHHHHcCC---CEEEeech-hhhh
Q 035561 451 PIPLKDFASVESMREEINEVVAFLQNPSAFQEMGARAPRGVLIVGERGTGKTSLALAIAAEARV---PVVNVEAQ-ELEA 526 (979)
Q Consensus 451 ~~~f~DIvGleevke~L~eiV~~L~~p~~f~~lG~~~P~gVLL~GPPGTGKTtLArAlA~elg~---~~i~Is~s-dL~~ 526 (979)
..+++++.-..+.+..|+.++ . ....-+++.||+|+||||+++++++.... .++.+.-. ++..
T Consensus 143 ~~~l~~Lg~~~~~~~~L~~l~---~----------~~ggii~I~GpnGSGKTTlL~allg~l~~~~g~I~~~ed~ie~~~ 209 (418)
T 1p9r_A 143 RLDLHSLGMTAHNHDNFRRLI---K----------RPHGIILVTGPTGSGKSTTLYAGLQELNSSERNILTVEDPIEFDI 209 (418)
T ss_dssp CCCGGGSCCCHHHHHHHHHHH---T----------SSSEEEEEECSTTSCHHHHHHHHHHHHCCTTSCEEEEESSCCSCC
T ss_pred CCCHHHcCCCHHHHHHHHHHH---H----------hcCCeEEEECCCCCCHHHHHHHHHhhcCCCCCEEEEecccchhcc
Confidence 456777765555555555431 1 11234789999999999999999998742 33332211 1100
Q ss_pred h-----hhcccchhhHHHHHHHHHhcCCeEEEEcCcc
Q 035561 527 G-----LWVGQSASNVRELFQTARDLAPVIIFVEDFD 558 (979)
Q Consensus 527 ~-----~~vG~~~~~Ir~lF~~A~~~aP~ILfIDEID 558 (979)
. .......-........+-...|.++++.|+-
T Consensus 210 ~~~~q~~v~~~~g~~f~~~lr~~Lrq~pd~i~vgEiR 246 (418)
T 1p9r_A 210 DGIGQTQVNPRVDMTFARGLRAILRQDPDVVMVGEIR 246 (418)
T ss_dssp SSSEEEECBGGGTBCHHHHHHHHGGGCCSEEEESCCC
T ss_pred CCcceEEEccccCcCHHHHHHHHhccCCCeEEEcCcC
Confidence 0 0000111123344455555689999999973
No 267
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=94.64 E-value=0.093 Score=61.54 Aligned_cols=36 Identities=22% Similarity=0.215 Sum_probs=28.4
Q ss_pred CCCceeEecCCCCCChHHHHHHHHHHc---CCCEEEeec
Q 035561 486 RAPRGVLIVGERGTGKTSLALAIAAEA---RVPVVNVEA 521 (979)
Q Consensus 486 ~~P~gVLL~GPPGTGKTtLArAlA~el---g~~~i~Is~ 521 (979)
..|..|+++|+||+||||++..+|..+ |..+..+++
T Consensus 99 ~~~~vI~ivG~~GvGKTTl~~kLA~~l~~~G~kVllVd~ 137 (504)
T 2j37_W 99 GKQNVIMFVGLQGSGKTTTCSKLAYYYQRKGWKTCLICA 137 (504)
T ss_dssp S--EEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEE
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEec
Confidence 346789999999999999999999765 666766666
No 268
>3b6e_A Interferon-induced helicase C domain-containing P; DECH, DEXD/H RNA-binding helicase, innate immunity, IFIH1, S genomics; 1.60A {Homo sapiens}
Probab=94.64 E-value=0.066 Score=53.67 Aligned_cols=24 Identities=33% Similarity=0.553 Sum_probs=20.4
Q ss_pred ceeEecCCCCCChHHHHHHHHHHc
Q 035561 489 RGVLIVGERGTGKTSLALAIAAEA 512 (979)
Q Consensus 489 ~gVLL~GPPGTGKTtLArAlA~el 512 (979)
+++++.+|+|+|||+++-..+...
T Consensus 49 ~~~li~~~tGsGKT~~~~~~~~~~ 72 (216)
T 3b6e_A 49 KNIIICLPTGSGKTRVAVYIAKDH 72 (216)
T ss_dssp CCEEEECSCHHHHHHHHHHHHHHH
T ss_pred CCEEEEcCCCCCHHHHHHHHHHHH
Confidence 469999999999999888777653
No 269
>2axn_A 6-phosphofructo-2-kinase/fructose-2,6- biphosphatase 3 (6PF-2-K/FRU- 2,6-P2ASE brain/placenta-type...; bifunctional enzyme, EDTA complex; HET: F6P EDT ADP; 2.10A {Homo sapiens} PDB: 2dwo_A* 2dwp_A* 2i1v_B* 3qpu_A* 3qpv_A* 3qpw_A*
Probab=94.57 E-value=0.057 Score=63.52 Aligned_cols=39 Identities=23% Similarity=0.344 Sum_probs=31.1
Q ss_pred CCceeEecCCCCCChHHHHHHHHHHc---CCCEEEeechhhh
Q 035561 487 APRGVLIVGERGTGKTSLALAIAAEA---RVPVVNVEAQELE 525 (979)
Q Consensus 487 ~P~gVLL~GPPGTGKTtLArAlA~el---g~~~i~Is~sdL~ 525 (979)
.|.-|+|+|.||+||||+|+.+|..+ +.+...++..++.
T Consensus 34 ~~~lIvlvGlpGSGKSTia~~La~~L~~~~~d~~v~s~D~~r 75 (520)
T 2axn_A 34 SPTVIVMVGLPARGKTYISKKLTRYLNWIGVPTKVFNVGEYR 75 (520)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHhhcCCCeEEecccHHH
Confidence 35568999999999999999999988 4566666666543
No 270
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=94.53 E-value=0.052 Score=63.64 Aligned_cols=115 Identities=17% Similarity=0.174 Sum_probs=62.9
Q ss_pred CCCCCceeEecCCCCCChHHHHHH--HHHHc--CCCEEEeechhhhhh-----hhccc----------------------
Q 035561 484 GARAPRGVLIVGERGTGKTSLALA--IAAEA--RVPVVNVEAQELEAG-----LWVGQ---------------------- 532 (979)
Q Consensus 484 G~~~P~gVLL~GPPGTGKTtLArA--lA~el--g~~~i~Is~sdL~~~-----~~vG~---------------------- 532 (979)
+++....++|.||+|||||||++. +++.. +...+++++.+.... ...|.
T Consensus 35 ~i~~Ge~~~l~G~nGsGKSTL~~~~ll~Gl~~~~~g~i~v~g~~~~~~~~~~~~~~g~~~q~~~~~~~l~~~~~~~~~~~ 114 (525)
T 1tf7_A 35 GLPIGRSTLVSGTSGTGKTLFSIQFLYNGIIEFDEPGVFVTFEETPQDIIKNARSFGWDLAKLVDEGKLFILDASPDPEG 114 (525)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHHHHHHHHCCCEEEEESSSCHHHHHHHHGGGTCCHHHHHHTTSEEEEECCCCSSC
T ss_pred CCCCCeEEEEEcCCCCCHHHHHHHHHHHHHHhCCCCEEEEEEeCCHHHHHHHHHHcCCChHHhhccCcEEEEecCcccch
Confidence 455567799999999999999999 44543 445666655331000 00000
Q ss_pred --------chhhHHHHHHHHHhcCCeEEEEcCccccccccccccCCCchhhHHHHHHHHhhhcccccCCeEEEEecccch
Q 035561 533 --------SASNVRELFQTARDLAPVIIFVEDFDLFAGVRGQFIHTKQQDHESFINQLLVELDGFEKQDGVVLMATTRNI 604 (979)
Q Consensus 533 --------~~~~Ir~lF~~A~~~aP~ILfIDEIDaL~~~r~~~~~~~~~~~~~iln~LL~~LDg~~~~~~ViVIATTN~p 604 (979)
................|.+|+|||.-++.+.- ..+......+..++..+. . .++.+|.+|.+.
T Consensus 115 ~~~l~~~~l~~~~~~~~~~LS~g~~~~lilDe~t~~~~~~-----~lD~~~~~~l~~ll~~l~---~-~g~tvl~itH~~ 185 (525)
T 1tf7_A 115 QEVVGGFDLSALIERINYAIQKYRARRVSIDSVTSVFQQY-----DASSVVRRELFRLVARLK---Q-IGATTVMTTERI 185 (525)
T ss_dssp CSCCSSHHHHHHHHHHHHHHHHHTCSEEEEECSTTTSTTT-----CCHHHHHHHHHHHHHHHH---H-HTCEEEEEEECS
T ss_pred hhhhcccCHHHHHHHHHHHHHHcCCCEEEECCHHHHHHhc-----CCHHHHHHHHHHHHHHHH---H-CCCEEEEEecCC
Confidence 01122233344445678999999997664321 111223334445554443 2 244566667776
Q ss_pred hhc
Q 035561 605 KQI 607 (979)
Q Consensus 605 e~L 607 (979)
+.+
T Consensus 186 ~~~ 188 (525)
T 1tf7_A 186 EEY 188 (525)
T ss_dssp SSS
T ss_pred CCc
Confidence 655
No 271
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=94.51 E-value=0.029 Score=56.94 Aligned_cols=38 Identities=21% Similarity=0.200 Sum_probs=29.3
Q ss_pred CCCceeEecCCCCCChHHHHHHHHHHc---CCCEEEeechh
Q 035561 486 RAPRGVLIVGERGTGKTSLALAIAAEA---RVPVVNVEAQE 523 (979)
Q Consensus 486 ~~P~gVLL~GPPGTGKTtLArAlA~el---g~~~i~Is~sd 523 (979)
..+.-+.|.||+|+||||+++.+++.+ +.+++..+...
T Consensus 20 ~~~~~i~i~G~~GsGKstl~~~l~~~~~~~~~~v~~~~~d~ 60 (201)
T 1rz3_A 20 AGRLVLGIDGLSRSGKTTLANQLSQTLREQGISVCVFHMDD 60 (201)
T ss_dssp SSSEEEEEEECTTSSHHHHHHHHHHHHHHTTCCEEEEEGGG
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHhhcCCeEEEeccCc
Confidence 344568899999999999999999976 66666554443
No 272
>3fdi_A Uncharacterized protein; cytidylate kinase like protein, PSI, MCSG, PRK04182 class ME structural genomics, protein structure initiative; 2.20A {Eubacterium ventriosum}
Probab=94.48 E-value=0.019 Score=58.97 Aligned_cols=29 Identities=24% Similarity=0.305 Sum_probs=27.0
Q ss_pred eeEecCCCCCChHHHHHHHHHHcCCCEEE
Q 035561 490 GVLIVGERGTGKTSLALAIAAEARVPVVN 518 (979)
Q Consensus 490 gVLL~GPPGTGKTtLArAlA~elg~~~i~ 518 (979)
-|.|.|++|||||++++.+|+.+|.+++.
T Consensus 8 iI~i~g~~GsGk~ti~~~la~~lg~~~~D 36 (201)
T 3fdi_A 8 IIAIGREFGSGGHLVAKKLAEHYNIPLYS 36 (201)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHTTCCEEC
T ss_pred EEEEeCCCCCCHHHHHHHHHHHhCcCEEC
Confidence 58899999999999999999999999883
No 273
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=94.47 E-value=0.017 Score=60.14 Aligned_cols=36 Identities=28% Similarity=0.525 Sum_probs=29.5
Q ss_pred CceeEecCCCCCChHHHHHHHHHHcCCCEEEeechhh
Q 035561 488 PRGVLIVGERGTGKTSLALAIAAEARVPVVNVEAQEL 524 (979)
Q Consensus 488 P~gVLL~GPPGTGKTtLArAlA~elg~~~i~Is~sdL 524 (979)
+++++|.||+|+|||++|..++...+ +++..+.-.+
T Consensus 34 g~~ilI~GpsGsGKStLA~~La~~g~-~iIsdDs~~v 69 (205)
T 2qmh_A 34 GLGVLITGDSGVGKSETALELVQRGH-RLIADDRVDV 69 (205)
T ss_dssp TEEEEEECCCTTTTHHHHHHHHTTTC-EEEESSEEEE
T ss_pred CEEEEEECCCCCCHHHHHHHHHHhCC-eEEecchhhe
Confidence 56899999999999999999998876 6666555443
No 274
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=94.41 E-value=0.019 Score=57.56 Aligned_cols=25 Identities=40% Similarity=0.567 Sum_probs=22.1
Q ss_pred ceeEecCCCCCChHHHHHHHHHHcC
Q 035561 489 RGVLIVGERGTGKTSLALAIAAEAR 513 (979)
Q Consensus 489 ~gVLL~GPPGTGKTtLArAlA~elg 513 (979)
+-+.|.||+|+||||+++.+++...
T Consensus 2 ~ii~l~GpsGaGKsTl~~~L~~~~~ 26 (186)
T 3a00_A 2 RPIVISGPSGTGKSTLLKKLFAEYP 26 (186)
T ss_dssp CCEEEESSSSSSHHHHHHHHHHHCG
T ss_pred CEEEEECCCCCCHHHHHHHHHhhCC
Confidence 4478999999999999999998764
No 275
>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=94.33 E-value=0.095 Score=52.89 Aligned_cols=25 Identities=28% Similarity=0.553 Sum_probs=22.3
Q ss_pred CceeEecCCCCCChHHHHHHHHHHc
Q 035561 488 PRGVLIVGERGTGKTSLALAIAAEA 512 (979)
Q Consensus 488 P~gVLL~GPPGTGKTtLArAlA~el 512 (979)
+..|++.|++|+|||+|+.++++..
T Consensus 12 ~~~i~~~G~~g~GKTsl~~~l~~~~ 36 (218)
T 1nrj_B 12 QPSIIIAGPQNSGKTSLLTLLTTDS 36 (218)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHSS
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCC
Confidence 4569999999999999999999865
No 276
>3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens}
Probab=94.31 E-value=0.15 Score=52.97 Aligned_cols=22 Identities=32% Similarity=0.395 Sum_probs=17.9
Q ss_pred ceeEecCCCCCChHHHHHHHHH
Q 035561 489 RGVLIVGERGTGKTSLALAIAA 510 (979)
Q Consensus 489 ~gVLL~GPPGTGKTtLArAlA~ 510 (979)
..+++.||+|||||++...+.-
T Consensus 77 ~~~~i~g~TGsGKTt~~~~~~~ 98 (235)
T 3llm_A 77 SVVIIRGATGCGKTTQVPQFIL 98 (235)
T ss_dssp SEEEEECCTTSSHHHHHHHHHH
T ss_pred CEEEEEeCCCCCcHHhHHHHHh
Confidence 5699999999999987665543
No 277
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=94.30 E-value=0.28 Score=57.46 Aligned_cols=28 Identities=36% Similarity=0.503 Sum_probs=24.1
Q ss_pred CCCCceeEecCCCCCChHHHHHHHHHHc
Q 035561 485 ARAPRGVLIVGERGTGKTSLALAIAAEA 512 (979)
Q Consensus 485 ~~~P~gVLL~GPPGTGKTtLArAlA~el 512 (979)
+..+.-+.|.||+|+||||+++.||+.+
T Consensus 290 i~~GeVI~LVGpNGSGKTTLl~~LAgll 317 (503)
T 2yhs_A 290 GKAPFVILMVGVNGVGKTTTIGKLARQF 317 (503)
T ss_dssp SCTTEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred ccCCeEEEEECCCcccHHHHHHHHHHHh
Confidence 3456678899999999999999999875
No 278
>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*
Probab=94.10 E-value=0.022 Score=64.98 Aligned_cols=37 Identities=24% Similarity=0.504 Sum_probs=30.2
Q ss_pred CceeEecCCCCCChHHHHHHHHHHcCCCEEEeechhh
Q 035561 488 PRGVLIVGERGTGKTSLALAIAAEARVPVVNVEAQEL 524 (979)
Q Consensus 488 P~gVLL~GPPGTGKTtLArAlA~elg~~~i~Is~sdL 524 (979)
+.-|+|.||+|+|||+|+..+|..++..+++.+...+
T Consensus 2 ~~~i~i~GptgsGKttla~~La~~~~~~iis~Ds~Qv 38 (409)
T 3eph_A 2 KKVIVIAGTTGVGKSQLSIQLAQKFNGEVINSDSMQV 38 (409)
T ss_dssp CEEEEEEECSSSSHHHHHHHHHHHHTEEEEECCTTTT
T ss_pred CcEEEEECcchhhHHHHHHHHHHHCCCeEeecCccce
Confidence 3457899999999999999999999887766655444
No 279
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=94.06 E-value=0.035 Score=59.63 Aligned_cols=39 Identities=21% Similarity=0.237 Sum_probs=30.5
Q ss_pred cCCCCCceeEecCCCCCChHHHHHHHHHHc----CCCEEEeec
Q 035561 483 MGARAPRGVLIVGERGTGKTSLALAIAAEA----RVPVVNVEA 521 (979)
Q Consensus 483 lG~~~P~gVLL~GPPGTGKTtLArAlA~el----g~~~i~Is~ 521 (979)
.|++...-++|.||||+|||||++.+|..+ |.+++.++.
T Consensus 30 ~~l~~G~~~~i~G~~G~GKTTl~~~ia~~~~~~~G~~v~~~~~ 72 (296)
T 1cr0_A 30 LGARGGEVIMVTSGSGMGKSTFVRQQALQWGTAMGKKVGLAML 72 (296)
T ss_dssp CSBCTTCEEEEEESTTSSHHHHHHHHHHHHHHTSCCCEEEEES
T ss_pred cCCCCCeEEEEEeCCCCCHHHHHHHHHHHHHHHcCCeEEEEeC
Confidence 356666779999999999999999999875 445655554
No 280
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=94.02 E-value=0.025 Score=57.62 Aligned_cols=26 Identities=35% Similarity=0.600 Sum_probs=22.4
Q ss_pred CceeEecCCCCCChHHHHHHHHHHcC
Q 035561 488 PRGVLIVGERGTGKTSLALAIAAEAR 513 (979)
Q Consensus 488 P~gVLL~GPPGTGKTtLArAlA~elg 513 (979)
++-+.|.||+|+|||||++.+++...
T Consensus 4 g~~i~lvGpsGaGKSTLl~~L~~~~~ 29 (198)
T 1lvg_A 4 PRPVVLSGPSGAGKSTLLKKLFQEHS 29 (198)
T ss_dssp -CCEEEECCTTSSHHHHHHHHHHHHT
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhCc
Confidence 45689999999999999999998763
No 281
>3thx_B DNA mismatch repair protein MSH3; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 3thw_B* 3thy_B* 3thz_B*
Probab=93.98 E-value=0.084 Score=66.10 Aligned_cols=24 Identities=29% Similarity=0.375 Sum_probs=20.8
Q ss_pred CCceeEecCCCCCChHHHHHHHHH
Q 035561 487 APRGVLIVGERGTGKTSLALAIAA 510 (979)
Q Consensus 487 ~P~gVLL~GPPGTGKTtLArAlA~ 510 (979)
...-++|.||.|+||||+.|.++.
T Consensus 672 ~g~i~~ItGPNGaGKSTlLr~i~~ 695 (918)
T 3thx_B 672 SERVMIITGPNMGGKSSYIKQVAL 695 (918)
T ss_dssp SCCEEEEESCCCHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCchHHHHHHHHH
Confidence 345689999999999999999875
No 282
>1q0u_A Bstdead; DEAD protein, RNA binding protein; 1.85A {Geobacillus stearothermophilus} SCOP: c.37.1.19
Probab=93.92 E-value=0.065 Score=54.61 Aligned_cols=54 Identities=22% Similarity=0.215 Sum_probs=30.7
Q ss_pred CCCCcccCcHHHHHHHHHHHHhhcChhHHHhcCC---CCCceeEecCCCCCChHHHHHH
Q 035561 452 IPLKDFASVESMREEINEVVAFLQNPSAFQEMGA---RAPRGVLIVGERGTGKTSLALA 507 (979)
Q Consensus 452 ~~f~DIvGleevke~L~eiV~~L~~p~~f~~lG~---~~P~gVLL~GPPGTGKTtLArA 507 (979)
.+|+++.-.+.+.+.|.+. -+..+..++...+ ...+.+++.+|+|+|||..+-.
T Consensus 4 ~~f~~~~l~~~l~~~l~~~--g~~~~~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~~ 60 (219)
T 1q0u_A 4 TQFTRFPFQPFIIEAIKTL--RFYKPTEIQERIIPGALRGESMVGQSQTGTGKTHAYLL 60 (219)
T ss_dssp CCGGGSCCCHHHHHHHHHT--TCCSCCHHHHHHHHHHHHTCCEEEECCSSHHHHHHHHH
T ss_pred CCHhhCCCCHHHHHHHHHC--CCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHH
Confidence 4577776666666665431 1222322222111 1125699999999999986433
No 283
>3iuy_A Probable ATP-dependent RNA helicase DDX53; REC-A-like, DEAD-BOX, structural genomics, structural genomi consortium, SGC, ATP-binding, hydrolase; HET: AMP; 2.40A {Homo sapiens}
Probab=93.91 E-value=0.16 Score=51.88 Aligned_cols=57 Identities=25% Similarity=0.301 Sum_probs=32.4
Q ss_pred CCCCCCCCcc-cCcHHHHHHHHHHHHhhcChhHHHhcCC---CCCceeEecCCCCCChHHHHH
Q 035561 448 KNPPIPLKDF-ASVESMREEINEVVAFLQNPSAFQEMGA---RAPRGVLIVGERGTGKTSLAL 506 (979)
Q Consensus 448 ~~~~~~f~DI-vGleevke~L~eiV~~L~~p~~f~~lG~---~~P~gVLL~GPPGTGKTtLAr 506 (979)
..|..+|+|. .-.+++.+.|.+. -+..+..++...+ ...+.+++.+|+|+|||..+-
T Consensus 15 p~p~~~f~~~~~l~~~l~~~l~~~--g~~~~~~~Q~~~i~~~~~~~~~l~~apTGsGKT~~~~ 75 (228)
T 3iuy_A 15 PKPTCRFKDAFQQYPDLLKSIIRV--GILKPTPIQSQAWPIILQGIDLIVVAQTGTGKTLSYL 75 (228)
T ss_dssp CCCCCSHHHHHTTCHHHHHHHHHH--TCCSCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHH
T ss_pred CCChhhHhhhhccCHHHHHHHHHC--CCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHH
Confidence 4556678884 3444555555432 1333333332211 123579999999999998544
No 284
>3thx_A DNA mismatch repair protein MSH2; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 2o8c_A* 2o8d_A* 2o8f_A* 3thw_A* 2o8b_A* 3thy_A* 3thz_A* 2o8e_A*
Probab=93.91 E-value=0.1 Score=65.54 Aligned_cols=22 Identities=18% Similarity=0.143 Sum_probs=19.3
Q ss_pred ceeEecCCCCCChHHHHHHHHH
Q 035561 489 RGVLIVGERGTGKTSLALAIAA 510 (979)
Q Consensus 489 ~gVLL~GPPGTGKTtLArAlA~ 510 (979)
.-++|+||.|+||||+.|.+|.
T Consensus 663 ~i~~ItGpNGsGKSTlLr~ial 684 (934)
T 3thx_A 663 MFHIITGPNMGGKSTYIRQTGV 684 (934)
T ss_dssp CEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4588999999999999999954
No 285
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=93.89 E-value=0.095 Score=61.40 Aligned_cols=77 Identities=21% Similarity=0.253 Sum_probs=49.6
Q ss_pred CCCCCceeEecCCCCCChHHHHHHHHHHc---CCCEEEeechh----hhhhh-hcc----------------------cc
Q 035561 484 GARAPRGVLIVGERGTGKTSLALAIAAEA---RVPVVNVEAQE----LEAGL-WVG----------------------QS 533 (979)
Q Consensus 484 G~~~P~gVLL~GPPGTGKTtLArAlA~el---g~~~i~Is~sd----L~~~~-~vG----------------------~~ 533 (979)
++.....++|.||||||||||++.++... |.+++++...+ +.... ..| .+
T Consensus 277 ~i~~G~i~~i~G~~GsGKSTLl~~l~g~~~~~G~~vi~~~~ee~~~~l~~~~~~~g~~~~~~~~~g~~~~~~~~p~~LS~ 356 (525)
T 1tf7_A 277 GFFKDSIILATGATGTGKTLLVSRFVENACANKERAILFAYEESRAQLLRNAYSWGMDFEEMERQNLLKIVCAYPESAGL 356 (525)
T ss_dssp SEESSCEEEEEECTTSSHHHHHHHHHHHHHTTTCCEEEEESSSCHHHHHHHHHTTSCCHHHHHHTTSEEECCCCGGGSCH
T ss_pred CCCCCcEEEEEeCCCCCHHHHHHHHHHHHHhCCCCEEEEEEeCCHHHHHHHHHHcCCCHHHHHhCCCEEEEEeccccCCH
Confidence 45556678999999999999999999765 44555554322 11000 000 12
Q ss_pred hhhHHHHHHHHHhcCCeEEEEcCcccc
Q 035561 534 ASNVRELFQTARDLAPVIIFVEDFDLF 560 (979)
Q Consensus 534 ~~~Ir~lF~~A~~~aP~ILfIDEIDaL 560 (979)
....+.+...+....|.+|+||=+..|
T Consensus 357 g~~q~~~~a~~l~~~p~llilDp~~~L 383 (525)
T 1tf7_A 357 EDHLQIIKSEINDFKPARIAIDSLSAL 383 (525)
T ss_dssp HHHHHHHHHHHHTTCCSEEEEECHHHH
T ss_pred HHHHHHHHHHHHhhCCCEEEEcChHHH
Confidence 334556667777778999999955444
No 286
>1qde_A EIF4A, translation initiation factor 4A; DEAD box protein family, gene regulation; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 1qva_A
Probab=93.86 E-value=0.16 Score=51.51 Aligned_cols=60 Identities=23% Similarity=0.257 Sum_probs=36.5
Q ss_pred CCCCCCCcccCcHHHHHHHHHHHHhhcChhHHHhcC---CCCCceeEecCCCCCChHHH-HHHHHH
Q 035561 449 NPPIPLKDFASVESMREEINEVVAFLQNPSAFQEMG---ARAPRGVLIVGERGTGKTSL-ALAIAA 510 (979)
Q Consensus 449 ~~~~~f~DIvGleevke~L~eiV~~L~~p~~f~~lG---~~~P~gVLL~GPPGTGKTtL-ArAlA~ 510 (979)
.+..+|+++.-.+.+.+.|.+. -+..+..++... +...+++++.+|+|+|||.. +-.+..
T Consensus 11 ~~~~~f~~l~l~~~l~~~l~~~--g~~~~~~~Q~~~i~~~~~~~~~lv~~pTGsGKT~~~~~~~l~ 74 (224)
T 1qde_A 11 KVVYKFDDMELDENLLRGVFGY--GFEEPSAIQQRAIMPIIEGHDVLAQAQSGTGKTGTFSIAALQ 74 (224)
T ss_dssp CCCCCGGGGTCCHHHHHHHHHH--TCCSCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHH
T ss_pred cccCChhhcCCCHHHHHHHHHC--CCCCCcHHHHHHHHHHhcCCCEEEECCCCCcHHHHHHHHHHH
Confidence 3446799987777777777642 133333332221 11235799999999999986 333443
No 287
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=93.79 E-value=0.031 Score=57.78 Aligned_cols=27 Identities=26% Similarity=0.342 Sum_probs=22.9
Q ss_pred CCCceeEecCCCCCChHHHHHHHHHHc
Q 035561 486 RAPRGVLIVGERGTGKTSLALAIAAEA 512 (979)
Q Consensus 486 ~~P~gVLL~GPPGTGKTtLArAlA~el 512 (979)
+.+.-+.|.||+|+|||||++.+++..
T Consensus 21 ~~G~~~~lvGpsGsGKSTLl~~L~g~~ 47 (218)
T 1z6g_A 21 NNIYPLVICGPSGVGKGTLIKKLLNEF 47 (218)
T ss_dssp -CCCCEEEECSTTSSHHHHHHHHHHHS
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhhC
Confidence 334558899999999999999999977
No 288
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=93.79 E-value=0.037 Score=54.92 Aligned_cols=28 Identities=25% Similarity=0.353 Sum_probs=24.1
Q ss_pred CCCCceeEecCCCCCChHHHHHHHHHHc
Q 035561 485 ARAPRGVLIVGERGTGKTSLALAIAAEA 512 (979)
Q Consensus 485 ~~~P~gVLL~GPPGTGKTtLArAlA~el 512 (979)
++...-+.|.||.|+|||||++++++.+
T Consensus 30 i~~Ge~v~L~G~nGaGKTTLlr~l~g~l 57 (158)
T 1htw_A 30 TEKAIMVYLNGDLGAGKTTLTRGMLQGI 57 (158)
T ss_dssp CSSCEEEEEECSTTSSHHHHHHHHHHHT
T ss_pred cCCCCEEEEECCCCCCHHHHHHHHHHhC
Confidence 4444558899999999999999999987
No 289
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=93.77 E-value=0.032 Score=58.44 Aligned_cols=30 Identities=17% Similarity=0.156 Sum_probs=24.7
Q ss_pred CCCceeEecCCCCCChHHHHHHHHHHcCCC
Q 035561 486 RAPRGVLIVGERGTGKTSLALAIAAEARVP 515 (979)
Q Consensus 486 ~~P~gVLL~GPPGTGKTtLArAlA~elg~~ 515 (979)
+.+.-+-|.||+|+||||+++.+++.+|..
T Consensus 23 ~~g~iigI~G~~GsGKSTl~k~L~~~lG~~ 52 (245)
T 2jeo_A 23 MRPFLIGVSGGTASGKSTVCEKIMELLGQN 52 (245)
T ss_dssp CCSEEEEEECSTTSSHHHHHHHHHHHHTGG
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHhchh
Confidence 334457799999999999999999988754
No 290
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=93.73 E-value=0.083 Score=57.69 Aligned_cols=35 Identities=37% Similarity=0.367 Sum_probs=28.1
Q ss_pred CceeEecCCCCCChHHHHHHHHHHc---CCCEEEeech
Q 035561 488 PRGVLIVGERGTGKTSLALAIAAEA---RVPVVNVEAQ 522 (979)
Q Consensus 488 P~gVLL~GPPGTGKTtLArAlA~el---g~~~i~Is~s 522 (979)
+.-+++.|++|+||||++..+|..+ +..+..+++.
T Consensus 98 ~~vi~i~G~~G~GKTT~~~~la~~~~~~g~~v~l~~~D 135 (297)
T 1j8m_F 98 PYVIMLVGVQGTGKTTTAGKLAYFYKKKGFKVGLVGAD 135 (297)
T ss_dssp SEEEEEECSSCSSTTHHHHHHHHHHHHTTCCEEEEECC
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEecC
Confidence 6678889999999999999999776 5666666553
No 291
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=93.71 E-value=0.3 Score=53.80 Aligned_cols=37 Identities=27% Similarity=0.247 Sum_probs=29.3
Q ss_pred CCCCceeEecCCCCCChHHHHHHHHHHc---CCCEEEeec
Q 035561 485 ARAPRGVLIVGERGTGKTSLALAIAAEA---RVPVVNVEA 521 (979)
Q Consensus 485 ~~~P~gVLL~GPPGTGKTtLArAlA~el---g~~~i~Is~ 521 (979)
...|.-++++||+|+||||++..+|..+ +..+..+++
T Consensus 102 ~~~~~vI~ivG~~G~GKTT~~~~LA~~l~~~g~kVllid~ 141 (320)
T 1zu4_A 102 ENRLNIFMLVGVNGTGKTTSLAKMANYYAELGYKVLIAAA 141 (320)
T ss_dssp TTSCEEEEEESSTTSSHHHHHHHHHHHHHHTTCCEEEEEC
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEeC
Confidence 3456778999999999999999999865 556666654
No 292
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=93.68 E-value=0.05 Score=59.24 Aligned_cols=29 Identities=21% Similarity=0.390 Sum_probs=24.9
Q ss_pred CCCCceeEecCCCCCChHHHHHHHHHHcC
Q 035561 485 ARAPRGVLIVGERGTGKTSLALAIAAEAR 513 (979)
Q Consensus 485 ~~~P~gVLL~GPPGTGKTtLArAlA~elg 513 (979)
...|.-|.|.||+||||||+++.+++.++
T Consensus 28 ~~~~~ii~I~G~sGsGKSTla~~L~~~l~ 56 (290)
T 1odf_A 28 NKCPLFIFFSGPQGSGKSFTSIQIYNHLM 56 (290)
T ss_dssp CCSCEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHhh
Confidence 34566788999999999999999999875
No 293
>1xx6_A Thymidine kinase; NESG, northeast structural genomics consortium, protein STRU initiative, PSI, structural genomics, DNA synthesis; HET: ADP; 2.00A {Clostridium acetobutylicum} SCOP: c.37.1.24 g.39.1.14
Probab=93.66 E-value=0.063 Score=54.98 Aligned_cols=70 Identities=17% Similarity=0.260 Sum_probs=41.3
Q ss_pred ceeEecCCCCCChHHHHHHHHHHc---CCCEEEeechhh-------hhhhhcccc-----hhhHHHHHHHHHhcCCeEEE
Q 035561 489 RGVLIVGERGTGKTSLALAIAAEA---RVPVVNVEAQEL-------EAGLWVGQS-----ASNVRELFQTARDLAPVIIF 553 (979)
Q Consensus 489 ~gVLL~GPPGTGKTtLArAlA~el---g~~~i~Is~sdL-------~~~~~vG~~-----~~~Ir~lF~~A~~~aP~ILf 553 (979)
+-.+++||+|+||||.+-.++..+ +..++.+....- +.+ ..|.. .....++++.+.. ...+|+
T Consensus 9 ~i~v~~G~mgsGKTT~ll~~a~r~~~~g~kV~v~k~~~d~r~~~~~i~s-~~g~~~~a~~~~~~~~i~~~~~~-~~dvVi 86 (191)
T 1xx6_A 9 WVEVIVGPMYSGKSEELIRRIRRAKIAKQKIQVFKPEIDNRYSKEDVVS-HMGEKEQAVAIKNSREILKYFEE-DTEVIA 86 (191)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEEC-------CEEEC-TTSCEEECEEESSSTHHHHHCCT-TCSEEE
T ss_pred EEEEEECCCCCcHHHHHHHHHHHHHHCCCEEEEEEeccCccchHHHHHh-hcCCceeeEeeCCHHHHHHHHhc-cCCEEE
Confidence 346789999999999888887765 666655532110 001 11211 1112345555442 357999
Q ss_pred EcCcccc
Q 035561 554 VEDFDLF 560 (979)
Q Consensus 554 IDEIDaL 560 (979)
|||+.-+
T Consensus 87 IDEaqfl 93 (191)
T 1xx6_A 87 IDEVQFF 93 (191)
T ss_dssp ECSGGGS
T ss_pred EECCCCC
Confidence 9998765
No 294
>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6
Probab=93.63 E-value=0.031 Score=60.72 Aligned_cols=37 Identities=19% Similarity=0.363 Sum_probs=26.0
Q ss_pred ceeEecCCCCCChHHHHHHHHHHcC---CCEEEeechhhh
Q 035561 489 RGVLIVGERGTGKTSLALAIAAEAR---VPVVNVEAQELE 525 (979)
Q Consensus 489 ~gVLL~GPPGTGKTtLArAlA~elg---~~~i~Is~sdL~ 525 (979)
.-|.|.||+||||||+|+.++..++ ..+..+++.++.
T Consensus 6 ~iIgItG~sGSGKSTva~~L~~~lg~~~~~~~vI~~D~~~ 45 (290)
T 1a7j_A 6 PIISVTGSSGAGTSTVKHTFDQIFRREGVKAVSIEGDAFH 45 (290)
T ss_dssp CEEEEESCC---CCTHHHHHHHHHHHHTCCEEEEEGGGGB
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHhhcCCCeeEeecchhh
Confidence 4588999999999999999999776 445556665553
No 295
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=93.60 E-value=0.026 Score=58.44 Aligned_cols=26 Identities=19% Similarity=0.262 Sum_probs=16.4
Q ss_pred CCceeEecCCCCCChHHHHHHHH-HHc
Q 035561 487 APRGVLIVGERGTGKTSLALAIA-AEA 512 (979)
Q Consensus 487 ~P~gVLL~GPPGTGKTtLArAlA-~el 512 (979)
.+.-+.|.||+|+||||+++.++ +..
T Consensus 26 ~G~ii~l~Gp~GsGKSTl~~~L~~~~~ 52 (231)
T 3lnc_A 26 VGVILVLSSPSGCGKTTVANKLLEKQK 52 (231)
T ss_dssp CCCEEEEECSCC----CHHHHHHC---
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhcCC
Confidence 34557899999999999999999 765
No 296
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=93.53 E-value=0.039 Score=56.22 Aligned_cols=28 Identities=18% Similarity=0.318 Sum_probs=23.3
Q ss_pred CCCceeEecCCCCCChHHHHHHHHHHcC
Q 035561 486 RAPRGVLIVGERGTGKTSLALAIAAEAR 513 (979)
Q Consensus 486 ~~P~gVLL~GPPGTGKTtLArAlA~elg 513 (979)
....-+.|.||+|+||||+++++++...
T Consensus 18 ~~Gei~~l~GpnGsGKSTLl~~l~gl~~ 45 (207)
T 1znw_A 18 AVGRVVVLSGPSAVGKSTVVRCLRERIP 45 (207)
T ss_dssp -CCCEEEEECSTTSSHHHHHHHHHHHST
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhhCC
Confidence 3345578999999999999999999874
No 297
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=93.44 E-value=0.058 Score=59.02 Aligned_cols=52 Identities=29% Similarity=0.432 Sum_probs=33.0
Q ss_pred HHHHHHHHHHHHh-hcChhHHHhc--CCCCCceeEecCCCCCChHHHHHHHHHHc
Q 035561 461 ESMREEINEVVAF-LQNPSAFQEM--GARAPRGVLIVGERGTGKTSLALAIAAEA 512 (979)
Q Consensus 461 eevke~L~eiV~~-L~~p~~f~~l--G~~~P~gVLL~GPPGTGKTtLArAlA~el 512 (979)
+.+++.+.+.+.. +........+ ....+.-+.|.||+|+||||+++.+|+.+
T Consensus 70 ~~~~~~~~~~l~~~l~~~~~~~~l~~~~~~g~vi~lvG~nGsGKTTll~~Lag~l 124 (302)
T 3b9q_A 70 SEIKDALKESVLEMLAKKNSKTELQLGFRKPAVIMIVGVNGGGKTTSLGKLAHRL 124 (302)
T ss_dssp HHHHHHHHHHHHHHHCC--CCCSCCCCSSSCEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCcccccccccccCCCcEEEEEcCCCCCHHHHHHHHHHHH
Confidence 4556666554443 3221100112 23456678899999999999999999876
No 298
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=93.40 E-value=0.3 Score=56.11 Aligned_cols=37 Identities=30% Similarity=0.390 Sum_probs=30.1
Q ss_pred CCCceeEecCCCCCChHHHHHHHHHHc----CCCEEEeech
Q 035561 486 RAPRGVLIVGERGTGKTSLALAIAAEA----RVPVVNVEAQ 522 (979)
Q Consensus 486 ~~P~gVLL~GPPGTGKTtLArAlA~el----g~~~i~Is~s 522 (979)
..|+.+++.|++|+||||++-.+|..+ |..+..+++.
T Consensus 98 ~~~~vI~ivG~~GvGKTT~a~~LA~~l~~~~G~kVllvd~D 138 (433)
T 2xxa_A 98 QPPAVVLMAGLQGAGKTTSVGKLGKFLREKHKKKVLVVSAD 138 (433)
T ss_dssp SSSEEEEEECSTTSSHHHHHHHHHHHHHHTSCCCEEEEECC
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHHhcCCeEEEEecC
Confidence 356789999999999999999888665 6777777764
No 299
>1wb9_A DNA mismatch repair protein MUTS; DNA-binding, ATP-binding, DNA binding, DNA repair, mismatch recognition; HET: DNA ADP; 2.10A {Escherichia coli} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1wbb_A* 1e3m_A* 1oh5_A* 1oh6_A* 1oh7_A* 1oh8_A* 1w7a_A* 2wtu_A* 1wbd_A* 1ng9_A* 3k0s_A*
Probab=93.31 E-value=0.21 Score=61.80 Aligned_cols=24 Identities=25% Similarity=0.256 Sum_probs=21.2
Q ss_pred CceeEecCCCCCChHHHHHHHHHH
Q 035561 488 PRGVLIVGERGTGKTSLALAIAAE 511 (979)
Q Consensus 488 P~gVLL~GPPGTGKTtLArAlA~e 511 (979)
..-++|+||.|+||||+.|.++..
T Consensus 607 g~i~~ItGpNGsGKSTlLr~iagl 630 (800)
T 1wb9_A 607 RRMLIITGPNMGGKSTYMRQTALI 630 (800)
T ss_dssp SCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CcEEEEECCCCCChHHHHHHHHHH
Confidence 356889999999999999999875
No 300
>3pey_A ATP-dependent RNA helicase DBP5; RECA, DEAD-BOX, ATPase, helicase, mRNA-export, nuclear pore, hydrolase-RNA complex; HET: ADP; 1.40A {Saccharomyces cerevisiae} PDB: 3pew_A* 3pex_A* 3pez_A* 3rrm_A* 3rrn_A* 2kbe_A 3gfp_A 2kbf_A 3pev_A* 3peu_A*
Probab=93.28 E-value=0.36 Score=52.59 Aligned_cols=56 Identities=23% Similarity=0.344 Sum_probs=34.2
Q ss_pred CCCCcccCcHHHHHHHHHHHHhhcChhHHHhcC-----CCCCceeEecCCCCCChHHHHHHHH
Q 035561 452 IPLKDFASVESMREEINEVVAFLQNPSAFQEMG-----ARAPRGVLIVGERGTGKTSLALAIA 509 (979)
Q Consensus 452 ~~f~DIvGleevke~L~eiV~~L~~p~~f~~lG-----~~~P~gVLL~GPPGTGKTtLArAlA 509 (979)
.+|+++.-.+++.+.|... -+..|..++... ...++++++.+|+|+|||+.+-..+
T Consensus 5 ~~f~~~~l~~~l~~~l~~~--~~~~~~~~Q~~~i~~~~~~~~~~~lv~a~TGsGKT~~~~~~~ 65 (395)
T 3pey_A 5 KSFDELGLAPELLKGIYAM--KFQKPSKIQERALPLLLHNPPRNMIAQSQSGTGKTAAFSLTM 65 (395)
T ss_dssp CSSTTSCCCHHHHHHHHHT--TCCSCCHHHHHHHHHHHCSSCCCEEEECCTTSCHHHHHHHHH
T ss_pred cCHhhCCCCHHHHHHHHHC--CCCCCCHHHHHHHHHHHcCCCCeEEEECCCCCcHHHHHHHHH
Confidence 4688887777777766541 122232222211 1234789999999999998655433
No 301
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=93.23 E-value=0.048 Score=60.00 Aligned_cols=30 Identities=20% Similarity=0.248 Sum_probs=25.9
Q ss_pred cCCCCCceeEecCCCCCChHHHHHHHHHHc
Q 035561 483 MGARAPRGVLIVGERGTGKTSLALAIAAEA 512 (979)
Q Consensus 483 lG~~~P~gVLL~GPPGTGKTtLArAlA~el 512 (979)
+.+++...+.|+||+|+|||||+++|++.+
T Consensus 121 l~i~~Ge~vaIvGpsGsGKSTLl~lL~gl~ 150 (305)
T 2v9p_A 121 KGIPKKNCLAFIGPPNTGKSMLCNSLIHFL 150 (305)
T ss_dssp HTCTTCSEEEEECSSSSSHHHHHHHHHHHH
T ss_pred EEecCCCEEEEECCCCCcHHHHHHHHhhhc
Confidence 345666678999999999999999999987
No 302
>1m8p_A Sulfate adenylyltransferase; rossmann fold, phosphosulfate binding, T-state; HET: PPS; 2.60A {Penicillium chrysogenum} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1i2d_A*
Probab=93.12 E-value=0.05 Score=64.74 Aligned_cols=38 Identities=16% Similarity=0.211 Sum_probs=31.7
Q ss_pred CCceeEecCCCCCChHHHHHHHHHHcC----CCEEEeechhh
Q 035561 487 APRGVLIVGERGTGKTSLALAIAAEAR----VPVVNVEAQEL 524 (979)
Q Consensus 487 ~P~gVLL~GPPGTGKTtLArAlA~elg----~~~i~Is~sdL 524 (979)
.+..|+|.|+|||||||+|++++..++ .+++.++...+
T Consensus 395 ~~~~I~l~GlsGSGKSTiA~~La~~L~~~G~~~~~~lD~D~i 436 (573)
T 1m8p_A 395 QGFTIFLTGYMNSGKDAIARALQVTLNQQGGRSVSLLLGDTV 436 (573)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHHHHHCSSCEEEEEHHHH
T ss_pred cceEEEeecCCCCCHHHHHHHHHHHhcccCCceEEEECcHHH
Confidence 345689999999999999999999986 78888876543
No 303
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=93.09 E-value=0.053 Score=56.69 Aligned_cols=33 Identities=18% Similarity=0.214 Sum_probs=26.3
Q ss_pred CCceeEecCCCCCChHHHHHHHHHHcC--CCEEEe
Q 035561 487 APRGVLIVGERGTGKTSLALAIAAEAR--VPVVNV 519 (979)
Q Consensus 487 ~P~gVLL~GPPGTGKTtLArAlA~elg--~~~i~I 519 (979)
.+.-|.|.||||+||||+++.+++.++ .+++..
T Consensus 25 ~g~~i~i~G~~GsGKsT~~~~l~~~l~~~~~~~~~ 59 (229)
T 4eaq_A 25 MSAFITFEGPEGSGKTTVINEVYHRLVKDYDVIMT 59 (229)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHHHHTTTSCEEEE
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHhcCCCceee
Confidence 344578899999999999999999986 455443
No 304
>4b3f_X DNA-binding protein smubp-2; hydrolase, helicase; 2.50A {Homo sapiens} PDB: 4b3g_A
Probab=93.04 E-value=0.33 Score=58.23 Aligned_cols=32 Identities=31% Similarity=0.457 Sum_probs=21.5
Q ss_pred eEecCCCCCChHHHHHHHHHHc---CCCEEEeech
Q 035561 491 VLIVGERGTGKTSLALAIAAEA---RVPVVNVEAQ 522 (979)
Q Consensus 491 VLL~GPPGTGKTtLArAlA~el---g~~~i~Is~s 522 (979)
.|+.||||||||+++-.+...+ +.+++.+..+
T Consensus 208 ~lI~GPPGTGKT~ti~~~I~~l~~~~~~ILv~a~T 242 (646)
T 4b3f_X 208 AIIHGPPGTGKTTTVVEIILQAVKQGLKVLCCAPS 242 (646)
T ss_dssp EEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEESS
T ss_pred eEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEcCc
Confidence 7899999999997555444433 5555555543
No 305
>3hdt_A Putative kinase; structura genomics, PSI-2, protein structure initiative, midwest CENT structural genomics, MCSG; 2.79A {Clostridium symbiosum atcc 14940}
Probab=93.01 E-value=0.044 Score=57.49 Aligned_cols=30 Identities=20% Similarity=0.215 Sum_probs=27.2
Q ss_pred ceeEecCCCCCChHHHHHHHHHHcCCCEEE
Q 035561 489 RGVLIVGERGTGKTSLALAIAAEARVPVVN 518 (979)
Q Consensus 489 ~gVLL~GPPGTGKTtLArAlA~elg~~~i~ 518 (979)
.-|.+.|++|||||++++.+|+.+|.+++.
T Consensus 15 ~iI~i~g~~gsGk~~i~~~la~~lg~~~~d 44 (223)
T 3hdt_A 15 LIITIEREYGSGGRIVGKKLAEELGIHFYD 44 (223)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHHHTCEEEC
T ss_pred eEEEEeCCCCCCHHHHHHHHHHHcCCcEEc
Confidence 357899999999999999999999999864
No 306
>3bor_A Human initiation factor 4A-II; translation initiation, DEAD BOX, structural genomics, helic binding, HOST-virus interaction, hydrolase; 1.85A {Homo sapiens} PDB: 2g9n_A*
Probab=92.99 E-value=0.1 Score=54.16 Aligned_cols=56 Identities=25% Similarity=0.218 Sum_probs=34.5
Q ss_pred CCCCCCCcccCcHHHHHHHHHHHHhhcChhHHHhcCC---CCCceeEecCCCCCChHHHHH
Q 035561 449 NPPIPLKDFASVESMREEINEVVAFLQNPSAFQEMGA---RAPRGVLIVGERGTGKTSLAL 506 (979)
Q Consensus 449 ~~~~~f~DIvGleevke~L~eiV~~L~~p~~f~~lG~---~~P~gVLL~GPPGTGKTtLAr 506 (979)
.+..+|+++.-.+.+.+.|... -+..+..++...+ ...+.+++.+|+|+|||..+-
T Consensus 27 ~~~~~f~~l~l~~~l~~~l~~~--g~~~~~~~Q~~ai~~i~~~~~~li~apTGsGKT~~~~ 85 (237)
T 3bor_A 27 EIVDNFDDMNLKESLLRGIYAY--GFEKPSAIQQRAIIPCIKGYDVIAQAQSGTGKTATFA 85 (237)
T ss_dssp CCCCSGGGSCCCHHHHHHHHHH--TCCSCCHHHHHHHHHHHTTCCEEECCCSSHHHHHHHH
T ss_pred CccCChhhcCCCHHHHHHHHHC--CCCCCCHHHHHHHHHHhCCCCEEEECCCCCcHHHHHH
Confidence 3456799997777777666532 1333333332211 123579999999999998643
No 307
>1c9k_A COBU, adenosylcobinamide kinase; alpha/beta structure rossmann fold P-loop, transferase; HET: 5GP; 2.20A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1cbu_A
Probab=92.96 E-value=0.042 Score=56.02 Aligned_cols=32 Identities=22% Similarity=0.408 Sum_probs=28.4
Q ss_pred eEecCCCCCChHHHHHHHHHHcCCCEEEeechh
Q 035561 491 VLIVGERGTGKTSLALAIAAEARVPVVNVEAQE 523 (979)
Q Consensus 491 VLL~GPPGTGKTtLArAlA~elg~~~i~Is~sd 523 (979)
+|++|++|+|||++|..+|.. +.+.+++....
T Consensus 2 ilV~Gg~~SGKS~~A~~la~~-~~~~~yiaT~~ 33 (180)
T 1c9k_A 2 ILVTGGARSGKSRHAEALIGD-APQVLYIATSQ 33 (180)
T ss_dssp EEEEECTTSSHHHHHHHHHCS-CSSEEEEECCC
T ss_pred EEEECCCCCcHHHHHHHHHhc-CCCeEEEecCC
Confidence 789999999999999999988 88888887644
No 308
>3fe2_A Probable ATP-dependent RNA helicase DDX5; DEAD, ADP, ATP-binding, hydrolase, nucleotide- RNA-binding, methylation, mRNA processing, mRNA S nucleus; HET: ADP; 2.60A {Homo sapiens} PDB: 4a4d_A
Probab=92.95 E-value=0.19 Score=52.16 Aligned_cols=57 Identities=21% Similarity=0.247 Sum_probs=35.0
Q ss_pred CCCCCCCCcccCcHHHHHHHHHHHHhhcChhHHHhcCC---CCCceeEecCCCCCChHHHHH
Q 035561 448 KNPPIPLKDFASVESMREEINEVVAFLQNPSAFQEMGA---RAPRGVLIVGERGTGKTSLAL 506 (979)
Q Consensus 448 ~~~~~~f~DIvGleevke~L~eiV~~L~~p~~f~~lG~---~~P~gVLL~GPPGTGKTtLAr 506 (979)
..+..+|+++.-.+.+.+.|.+. -+..+..++...+ ...+.+++.+|+|+|||..+-
T Consensus 25 p~~~~~f~~~~l~~~l~~~l~~~--g~~~~~~~Q~~~i~~~~~g~~~l~~apTGsGKT~~~~ 84 (242)
T 3fe2_A 25 PKPVLNFYEANFPANVMDVIARQ--NFTEPTAIQAQGWPVALSGLDMVGVAQTGSGKTLSYL 84 (242)
T ss_dssp CCCCSSTTTTTCCHHHHHHHHTT--TCCSCCHHHHHHHHHHHHTCCEEEEECTTSCHHHHHH
T ss_pred CCccCCHhhcCCCHHHHHHHHHC--CCCCCCHHHHHHHHHHhCCCCEEEECCCcCHHHHHHH
Confidence 44567899887777666666531 1333333322211 123579999999999998643
No 309
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=92.93 E-value=0.017 Score=58.39 Aligned_cols=23 Identities=30% Similarity=0.499 Sum_probs=21.5
Q ss_pred eEecCCCCCChHHHHHHHHHHcC
Q 035561 491 VLIVGERGTGKTSLALAIAAEAR 513 (979)
Q Consensus 491 VLL~GPPGTGKTtLArAlA~elg 513 (979)
|.|.|++||||||+++.++..++
T Consensus 3 I~i~G~~GsGKsTl~~~L~~~l~ 25 (214)
T 1gtv_A 3 IAIEGVDGAGKRTLVEKLSGAFR 25 (214)
T ss_dssp EEEEEEEEEEHHHHHHHHHHHHH
T ss_pred EEEEcCCCCCHHHHHHHHHHHHH
Confidence 78999999999999999999885
No 310
>1vec_A ATP-dependent RNA helicase P54; DEAD-box protein, RNA binding protein; HET: TLA; 2.01A {Homo sapiens} SCOP: c.37.1.19
Probab=92.87 E-value=0.078 Score=53.14 Aligned_cols=52 Identities=27% Similarity=0.355 Sum_probs=28.4
Q ss_pred CCCcccCcHHHHHHHHHHHHhhcChhHHHhcCC---CCCceeEecCCCCCChHHHHH
Q 035561 453 PLKDFASVESMREEINEVVAFLQNPSAFQEMGA---RAPRGVLIVGERGTGKTSLAL 506 (979)
Q Consensus 453 ~f~DIvGleevke~L~eiV~~L~~p~~f~~lG~---~~P~gVLL~GPPGTGKTtLAr 506 (979)
+|+++.-.+++.+.|.+. -+..+..++...+ ...+++++.+|+|+|||..+-
T Consensus 4 ~f~~~~l~~~l~~~l~~~--g~~~~~~~Q~~~i~~~~~~~~~lv~apTGsGKT~~~~ 58 (206)
T 1vec_A 4 EFEDYCLKRELLMGIFEM--GWEKPSPIQEESIPIALSGRDILARAKNGTGKSGAYL 58 (206)
T ss_dssp SGGGSCCCHHHHHHHHTT--TCCSCCHHHHHHHHHHHTTCCEEEECCSSSTTHHHHH
T ss_pred ChhhcCCCHHHHHHHHHC--CCCCCCHHHHHHHHHHccCCCEEEECCCCCchHHHHH
Confidence 466665555555555431 0222222222111 123579999999999997554
No 311
>3eiq_A Eukaryotic initiation factor 4A-I; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Homo sapiens}
Probab=92.82 E-value=0.33 Score=53.50 Aligned_cols=55 Identities=25% Similarity=0.240 Sum_probs=33.0
Q ss_pred CCCCCcccCcHHHHHHHHHHHHhhcChhHHHhcCC---CCCceeEecCCCCCChHHHHHH
Q 035561 451 PIPLKDFASVESMREEINEVVAFLQNPSAFQEMGA---RAPRGVLIVGERGTGKTSLALA 507 (979)
Q Consensus 451 ~~~f~DIvGleevke~L~eiV~~L~~p~~f~~lG~---~~P~gVLL~GPPGTGKTtLArA 507 (979)
..+|+++.-.+.+.+.|.+. -+..+..++...+ ...+.+++.+|+|+|||+.+-.
T Consensus 39 ~~~f~~~~l~~~~~~~l~~~--~~~~~~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~~ 96 (414)
T 3eiq_A 39 VDSFDDMNLSESLLRGIYAY--GFEKPSAIQQRAILPCIKGYDVIAQAQSGTGKTATFAI 96 (414)
T ss_dssp CCCGGGGCCCHHHHHHHHHT--TCCSCCHHHHHHHHHHHTTCCEEECCCSCSSSHHHHHH
T ss_pred hcCHhhCCCCHHHHHHHHHc--CCCCCCHHHHHHhHHHhCCCCEEEECCCCCcccHHHHH
Confidence 35677777777776666541 1333333322211 1235699999999999987443
No 312
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=92.81 E-value=0.078 Score=59.59 Aligned_cols=52 Identities=29% Similarity=0.432 Sum_probs=33.5
Q ss_pred HHHHHHHHHHHHh-hcChhHHHhc--CCCCCceeEecCCCCCChHHHHHHHHHHc
Q 035561 461 ESMREEINEVVAF-LQNPSAFQEM--GARAPRGVLIVGERGTGKTSLALAIAAEA 512 (979)
Q Consensus 461 eevke~L~eiV~~-L~~p~~f~~l--G~~~P~gVLL~GPPGTGKTtLArAlA~el 512 (979)
+.+++.+.+.+.. +........+ ....|.-+.|.||+|+||||+++.+|+.+
T Consensus 127 ~~~~~~l~~~l~~~l~~~~~~~~l~l~~~~g~vi~lvG~nGsGKTTll~~Lag~l 181 (359)
T 2og2_A 127 SEIKDALKESVLEMLAKKNSKTELQLGFRKPAVIMIVGVNGGGKTTSLGKLAHRL 181 (359)
T ss_dssp HHHHHHHHHHHHHHHCCC---CSCCCCSSSSEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCcccCCCcceecCCCeEEEEEcCCCChHHHHHHHHHhhc
Confidence 4566666554443 3322100112 23456678999999999999999999976
No 313
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=92.71 E-value=0.16 Score=56.45 Aligned_cols=34 Identities=24% Similarity=0.245 Sum_probs=26.4
Q ss_pred CceeEecCCCCCChHHHHHHHHHHc---CCCEEEeec
Q 035561 488 PRGVLIVGERGTGKTSLALAIAAEA---RVPVVNVEA 521 (979)
Q Consensus 488 P~gVLL~GPPGTGKTtLArAlA~el---g~~~i~Is~ 521 (979)
+..|.|.|+||+||||++.+++..+ |..+..+++
T Consensus 79 ~~~I~i~G~~G~GKSTl~~~L~~~l~~~g~kV~vi~~ 115 (355)
T 3p32_A 79 AHRVGITGVPGVGKSTAIEALGMHLIERGHRVAVLAV 115 (355)
T ss_dssp SEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEEE
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHHHhCCCceEEEec
Confidence 4568999999999999999999875 555444443
No 314
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=92.67 E-value=0.055 Score=59.04 Aligned_cols=28 Identities=29% Similarity=0.337 Sum_probs=23.8
Q ss_pred CCCceeEecCCCCCChHHHHHHHHHHcC
Q 035561 486 RAPRGVLIVGERGTGKTSLALAIAAEAR 513 (979)
Q Consensus 486 ~~P~gVLL~GPPGTGKTtLArAlA~elg 513 (979)
..+.-+-|.||+|+||||+++.+++.++
T Consensus 78 ~~g~iigI~G~~GsGKSTl~~~L~~~l~ 105 (308)
T 1sq5_A 78 RIPYIISIAGSVAVGKSTTARVLQALLS 105 (308)
T ss_dssp CCCEEEEEEECTTSSHHHHHHHHHHHHT
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHh
Confidence 3345578999999999999999999875
No 315
>1ewq_A DNA mismatch repair protein MUTS; multiple domains of protein, mostly mixed alpha-beta structures, one domain is entirely helical; HET: DNA; 2.20A {Thermus aquaticus} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1nne_A* 1fw6_A* 1ewr_A*
Probab=92.66 E-value=0.2 Score=61.57 Aligned_cols=24 Identities=29% Similarity=0.264 Sum_probs=21.2
Q ss_pred CceeEecCCCCCChHHHHHHHHHH
Q 035561 488 PRGVLIVGERGTGKTSLALAIAAE 511 (979)
Q Consensus 488 P~gVLL~GPPGTGKTtLArAlA~e 511 (979)
..-++|.||.|+||||+.|.++.-
T Consensus 576 g~i~~I~GpNGsGKSTlLr~iagl 599 (765)
T 1ewq_A 576 HELVLITGPNMAGKSTFLRQTALI 599 (765)
T ss_dssp SCEEEEESCSSSSHHHHHHHHHHH
T ss_pred CcEEEEECCCCCChHHHHHHHHhh
Confidence 456889999999999999999874
No 316
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=92.62 E-value=0.1 Score=58.37 Aligned_cols=73 Identities=22% Similarity=0.360 Sum_probs=46.7
Q ss_pred CCCceeEecCCCCCChHHHHHHHHHHcC--CCEEEeech-hhhhh---h---hcc-------c-chhhHHHHHHHHHhcC
Q 035561 486 RAPRGVLIVGERGTGKTSLALAIAAEAR--VPVVNVEAQ-ELEAG---L---WVG-------Q-SASNVRELFQTARDLA 548 (979)
Q Consensus 486 ~~P~gVLL~GPPGTGKTtLArAlA~elg--~~~i~Is~s-dL~~~---~---~vG-------~-~~~~Ir~lF~~A~~~a 548 (979)
+....++|.||+|+||||+++++++... ...+.++.. ++... . ++. . ....+++.+..+....
T Consensus 173 ~~G~~i~ivG~sGsGKSTll~~l~~~~~~~~g~I~ie~~~e~~~~~~~~~v~~v~~q~~~~~~~~~~t~~~~i~~~l~~~ 252 (361)
T 2gza_A 173 QLERVIVVAGETGSGKTTLMKALMQEIPFDQRLITIEDVPELFLPDHPNHVHLFYPSEAKEEENAPVTAATLLRSCLRMK 252 (361)
T ss_dssp HTTCCEEEEESSSSCHHHHHHHHHTTSCTTSCEEEEESSSCCCCTTCSSEEEEECC----------CCHHHHHHHHTTSC
T ss_pred hcCCEEEEECCCCCCHHHHHHHHHhcCCCCceEEEECCccccCccccCCEEEEeecCccccccccccCHHHHHHHHHhcC
Confidence 3445699999999999999999999764 334444432 11000 0 111 0 2234667777777778
Q ss_pred CeEEEEcCcc
Q 035561 549 PVIIFVEDFD 558 (979)
Q Consensus 549 P~ILfIDEID 558 (979)
|.+++++|+.
T Consensus 253 pd~~l~~e~r 262 (361)
T 2gza_A 253 PTRILLAELR 262 (361)
T ss_dssp CSEEEESCCC
T ss_pred CCEEEEcCch
Confidence 9999999974
No 317
>2pl3_A Probable ATP-dependent RNA helicase DDX10; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; HET: ADP; 2.15A {Homo sapiens}
Probab=92.51 E-value=0.18 Score=51.78 Aligned_cols=54 Identities=22% Similarity=0.223 Sum_probs=33.3
Q ss_pred CCCCCcccCcHHHHHHHHHHHHhhcChhHHHhcC---CCCCceeEecCCCCCChHHHHH
Q 035561 451 PIPLKDFASVESMREEINEVVAFLQNPSAFQEMG---ARAPRGVLIVGERGTGKTSLAL 506 (979)
Q Consensus 451 ~~~f~DIvGleevke~L~eiV~~L~~p~~f~~lG---~~~P~gVLL~GPPGTGKTtLAr 506 (979)
..+|+++.-.+.+.+.|.+. -+..+..++... +...+++++.+|+|+|||+.+-
T Consensus 24 ~~~f~~~~l~~~l~~~l~~~--~~~~~~~~Q~~~i~~~~~~~~~li~a~TGsGKT~~~~ 80 (236)
T 2pl3_A 24 ITRFSDFPLSKKTLKGLQEA--QYRLVTEIQKQTIGLALQGKDVLGAAKTGSGKTLAFL 80 (236)
T ss_dssp CSBGGGSCCCHHHHHHHHHT--TCCBCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHH
T ss_pred cCCHhhcCCCHHHHHHHHHC--CCCCCCHHHHHHHHHHhCCCCEEEEeCCCCcHHHHHH
Confidence 34688887777777777532 123333332211 1123579999999999998543
No 318
>2o8b_B DNA mismatch repair protein MSH6; DNA damage response, somatic hypermutat protein-DNA complex, DNA mispair, cancer; HET: DNA ADP; 2.75A {Homo sapiens} PDB: 2o8c_B* 2o8d_B* 2o8e_B* 2o8f_B*
Probab=92.36 E-value=0.25 Score=62.60 Aligned_cols=22 Identities=27% Similarity=0.338 Sum_probs=19.6
Q ss_pred CceeEecCCCCCChHHHHHHHH
Q 035561 488 PRGVLIVGERGTGKTSLALAIA 509 (979)
Q Consensus 488 P~gVLL~GPPGTGKTtLArAlA 509 (979)
..-++|+||.|+||||+.|.++
T Consensus 789 g~i~~ItGpNgsGKSTlLr~iG 810 (1022)
T 2o8b_B 789 AYCVLVTGPNMGGKSTLMRQAG 810 (1022)
T ss_dssp CCEEEEECCTTSSHHHHHHHHH
T ss_pred CcEEEEECCCCCChHHHHHHHH
Confidence 3668999999999999999994
No 319
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=92.33 E-value=0.071 Score=59.04 Aligned_cols=28 Identities=21% Similarity=0.279 Sum_probs=24.1
Q ss_pred CCCceeEecCCCCCChHHHHHHHHHHcC
Q 035561 486 RAPRGVLIVGERGTGKTSLALAIAAEAR 513 (979)
Q Consensus 486 ~~P~gVLL~GPPGTGKTtLArAlA~elg 513 (979)
..|.-+-|.||+||||||+++.++..++
T Consensus 90 ~~p~iigI~GpsGSGKSTl~~~L~~ll~ 117 (321)
T 3tqc_A 90 KVPYIIGIAGSVAVGKSTTSRVLKALLS 117 (321)
T ss_dssp CCCEEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHhc
Confidence 3455688999999999999999999875
No 320
>1s2m_A Putative ATP-dependent RNA helicase DHH1; ATP-binding, RNA-binding, RNA binding protein; 2.10A {Saccharomyces cerevisiae} SCOP: c.37.1.19 c.37.1.19 PDB: 2wax_A* 2way_A
Probab=92.18 E-value=0.46 Score=52.27 Aligned_cols=58 Identities=26% Similarity=0.281 Sum_probs=34.3
Q ss_pred CCCCCCcccCcHHHHHHHHHHHHhhcChhHHHhcCCC---CCceeEecCCCCCChHHHHHHHH
Q 035561 450 PPIPLKDFASVESMREEINEVVAFLQNPSAFQEMGAR---APRGVLIVGERGTGKTSLALAIA 509 (979)
Q Consensus 450 ~~~~f~DIvGleevke~L~eiV~~L~~p~~f~~lG~~---~P~gVLL~GPPGTGKTtLArAlA 509 (979)
...+|+++.-.+++.+.|.+. -+..+..++...++ ..+++++.+|+|+|||+.+-..+
T Consensus 19 ~~~~f~~~~l~~~l~~~l~~~--g~~~~~~~Q~~~i~~i~~~~~~li~a~TGsGKT~~~~~~~ 79 (400)
T 1s2m_A 19 KGNTFEDFYLKRELLMGIFEA--GFEKPSPIQEEAIPVAITGRDILARAKNGTGKTAAFVIPT 79 (400)
T ss_dssp --CCGGGGCCCHHHHHHHHHT--TCCSCCHHHHHHHHHHHHTCCEEEECCTTSCHHHHHHHHH
T ss_pred ccCChhhcCCCHHHHHHHHHC--CCCCCCHHHHHHHHHHhcCCCEEEECCCCcHHHHHHHHHH
Confidence 345799988777777776541 12223322222111 12569999999999998655444
No 321
>2oxc_A Probable ATP-dependent RNA helicase DDX20; DEAD, structural genomics, structural genomics consortium, SGC, hydrolase; HET: ADP; 1.30A {Homo sapiens} PDB: 3b7g_A*
Probab=92.10 E-value=0.71 Score=47.35 Aligned_cols=55 Identities=20% Similarity=0.306 Sum_probs=32.9
Q ss_pred CCCCCCCcccCcHHHHHHHHHHHHhhcChhHHHhcCC---CCCceeEecCCCCCChHHHH
Q 035561 449 NPPIPLKDFASVESMREEINEVVAFLQNPSAFQEMGA---RAPRGVLIVGERGTGKTSLA 505 (979)
Q Consensus 449 ~~~~~f~DIvGleevke~L~eiV~~L~~p~~f~~lG~---~~P~gVLL~GPPGTGKTtLA 505 (979)
.+..+|+++.-.+.+.+.|.+. -+..+..++...+ ...+++++.+|+|+|||..+
T Consensus 21 ~~~~~f~~l~l~~~l~~~l~~~--g~~~~~~~Q~~~i~~~~~~~~~l~~a~TGsGKT~~~ 78 (230)
T 2oxc_A 21 AEPADFESLLLSRPVLEGLRAA--GFERPSPVQLKAIPLGRCGLDLIVQAKSGTGKTCVF 78 (230)
T ss_dssp ---CCGGGGTCCHHHHHHHHHT--TCCSCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHH
T ss_pred CCCCCHhhcCCCHHHHHHHHHC--CCCCCCHHHHHHHHHHhCCCCEEEECCCCCcHHHHH
Confidence 3456799987677777776531 1333333332211 12367999999999999863
No 322
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=92.05 E-value=0.083 Score=58.06 Aligned_cols=28 Identities=21% Similarity=0.222 Sum_probs=23.7
Q ss_pred CCCceeEecCCCCCChHHHHHHHHHHcC
Q 035561 486 RAPRGVLIVGERGTGKTSLALAIAAEAR 513 (979)
Q Consensus 486 ~~P~gVLL~GPPGTGKTtLArAlA~elg 513 (979)
..+.-+.|.||+|+|||||++.|++.+.
T Consensus 88 ~~g~ivgI~G~sGsGKSTL~~~L~gll~ 115 (312)
T 3aez_A 88 PVPFIIGVAGSVAVGKSTTARVLQALLA 115 (312)
T ss_dssp CCCEEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred CCCEEEEEECCCCchHHHHHHHHHhhcc
Confidence 4455678999999999999999999763
No 323
>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1
Probab=92.04 E-value=0.077 Score=55.26 Aligned_cols=26 Identities=23% Similarity=0.387 Sum_probs=23.5
Q ss_pred CceeEecCCCCCChHHHHHHHHHHcC
Q 035561 488 PRGVLIVGERGTGKTSLALAIAAEAR 513 (979)
Q Consensus 488 P~gVLL~GPPGTGKTtLArAlA~elg 513 (979)
|.-|.+.|++|+||||+++.+++.++
T Consensus 2 ~~~i~~~G~~g~GKtt~~~~l~~~l~ 27 (241)
T 2ocp_A 2 PRRLSIEGNIAVGKSTFVKLLTKTYP 27 (241)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHHHCT
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHHcC
Confidence 45688999999999999999999984
No 324
>2zj8_A DNA helicase, putative SKI2-type helicase; RECA fold, ATP-binding, hydrolase, nucleotide- binding; 2.00A {Pyrococcus furiosus} PDB: 2zj5_A* 2zj2_A 2zja_A*
Probab=92.04 E-value=0.45 Score=57.63 Aligned_cols=20 Identities=30% Similarity=0.302 Sum_probs=17.3
Q ss_pred CCceeEecCCCCCChHHHHH
Q 035561 487 APRGVLIVGERGTGKTSLAL 506 (979)
Q Consensus 487 ~P~gVLL~GPPGTGKTtLAr 506 (979)
...++++.||+|+|||+.+-
T Consensus 38 ~~~~~lv~apTGsGKT~~~~ 57 (720)
T 2zj8_A 38 EGKNALISIPTASGKTLIAE 57 (720)
T ss_dssp GTCEEEEECCGGGCHHHHHH
T ss_pred CCCcEEEEcCCccHHHHHHH
Confidence 35789999999999999873
No 325
>1w4r_A Thymidine kinase; type II, human, cytosolic, phosphorylation, transferase; HET: TTP; 1.83A {Homo sapiens} PDB: 1xbt_A* 2wvj_A* 2j87_A*
Probab=92.00 E-value=0.13 Score=53.06 Aligned_cols=34 Identities=18% Similarity=0.173 Sum_probs=26.0
Q ss_pred ceeEecCCCCCChH-HHHHHHHHH--cCCCEEEeech
Q 035561 489 RGVLIVGERGTGKT-SLALAIAAE--ARVPVVNVEAQ 522 (979)
Q Consensus 489 ~gVLL~GPPGTGKT-tLArAlA~e--lg~~~i~Is~s 522 (979)
+=.++|||.|+||| .|.+++.+. .+..++.+...
T Consensus 21 ~l~fiyG~MgsGKTt~Ll~~i~n~~~~~~kvl~~kp~ 57 (195)
T 1w4r_A 21 QIQVILGPMFSGKSTELMRRVRRFQIAQYKCLVIKYA 57 (195)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHHHHHTTCCEEEEEET
T ss_pred EEEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEEccc
Confidence 34678999999999 788888764 46777777643
No 326
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=91.93 E-value=0.97 Score=51.87 Aligned_cols=35 Identities=29% Similarity=0.240 Sum_probs=27.9
Q ss_pred CCceeEecCCCCCChHHHHHHHHHHc---CCCEEEeec
Q 035561 487 APRGVLIVGERGTGKTSLALAIAAEA---RVPVVNVEA 521 (979)
Q Consensus 487 ~P~gVLL~GPPGTGKTtLArAlA~el---g~~~i~Is~ 521 (979)
.|..+++.|++|+||||++..+|..+ +..+..+++
T Consensus 97 ~~~vi~i~G~~GsGKTT~~~~LA~~l~~~g~~Vllvd~ 134 (425)
T 2ffh_A 97 DRNLWFLVGLQGSGKTTTAAKLALYYKGKGRRPLLVAA 134 (425)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEEC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEeec
Confidence 46678889999999999999999876 455555554
No 327
>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*
Probab=91.87 E-value=0.41 Score=47.13 Aligned_cols=23 Identities=30% Similarity=0.388 Sum_probs=20.8
Q ss_pred ceeEecCCCCCChHHHHHHHHHH
Q 035561 489 RGVLIVGERGTGKTSLALAIAAE 511 (979)
Q Consensus 489 ~gVLL~GPPGTGKTtLArAlA~e 511 (979)
..|++.|++|+|||+|+.++.+.
T Consensus 23 ~ki~v~G~~~~GKSsli~~l~~~ 45 (188)
T 1zd9_A 23 MELTLVGLQYSGKTTFVNVIASG 45 (188)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred cEEEEECCCCCCHHHHHHHHHcC
Confidence 46999999999999999999874
No 328
>1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ...
Probab=91.79 E-value=0.04 Score=58.32 Aligned_cols=31 Identities=19% Similarity=0.239 Sum_probs=25.4
Q ss_pred CCceeEecCCCCCChHHHHHHHHHHc-CCCEE
Q 035561 487 APRGVLIVGERGTGKTSLALAIAAEA-RVPVV 517 (979)
Q Consensus 487 ~P~gVLL~GPPGTGKTtLArAlA~el-g~~~i 517 (979)
.+.-|.|.|++||||||+++.+++.+ +..++
T Consensus 23 ~~~~I~ieG~~GsGKST~~~~L~~~l~~~~~i 54 (263)
T 1p5z_B 23 RIKKISIEGNIAAGKSTFVNILKQLCEDWEVV 54 (263)
T ss_dssp CCEEEEEECSTTSSHHHHHTTTGGGCTTEEEE
T ss_pred CceEEEEECCCCCCHHHHHHHHHHhcCCCEEE
Confidence 34568899999999999999999998 44333
No 329
>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A
Probab=91.69 E-value=0.54 Score=45.78 Aligned_cols=23 Identities=35% Similarity=0.411 Sum_probs=20.8
Q ss_pred ceeEecCCCCCChHHHHHHHHHH
Q 035561 489 RGVLIVGERGTGKTSLALAIAAE 511 (979)
Q Consensus 489 ~gVLL~GPPGTGKTtLArAlA~e 511 (979)
..|++.|++|+|||+|+.++.+.
T Consensus 24 ~~i~v~G~~~~GKSsli~~l~~~ 46 (195)
T 3pqc_A 24 GEVAFVGRSNVGKSSLLNALFNR 46 (195)
T ss_dssp CEEEEEEBTTSSHHHHHHHHHTS
T ss_pred eEEEEECCCCCCHHHHHHHHHcC
Confidence 35999999999999999999875
No 330
>1g8f_A Sulfate adenylyltransferase; alpha-beta protein, beta-barrel, rossmann-fold, kinase fold; 1.95A {Saccharomyces cerevisiae} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1g8g_A* 1g8h_A* 1j70_A 1jec_A 1jed_A* 1jee_A*
Probab=91.65 E-value=0.11 Score=60.90 Aligned_cols=27 Identities=7% Similarity=0.094 Sum_probs=24.6
Q ss_pred CceeEecCCCCCChHHHHHHHHHHcCC
Q 035561 488 PRGVLIVGERGTGKTSLALAIAAEARV 514 (979)
Q Consensus 488 P~gVLL~GPPGTGKTtLArAlA~elg~ 514 (979)
+..|.|.|.+||||||+++++|+.++.
T Consensus 395 ~~~I~l~GlsGsGKSTIa~~La~~L~~ 421 (511)
T 1g8f_A 395 GFSIVLGNSLTVSREQLSIALLSTFLQ 421 (511)
T ss_dssp CEEEEECTTCCSCHHHHHHHHHHHHTT
T ss_pred ceEEEecccCCCCHHHHHHHHHHHHHH
Confidence 357899999999999999999999975
No 331
>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=91.59 E-value=0.26 Score=48.61 Aligned_cols=23 Identities=35% Similarity=0.593 Sum_probs=21.1
Q ss_pred eeEecCCCCCChHHHHHHHHHHc
Q 035561 490 GVLIVGERGTGKTSLALAIAAEA 512 (979)
Q Consensus 490 gVLL~GPPGTGKTtLArAlA~el 512 (979)
.|++.|++|+|||+|+.++.+..
T Consensus 25 ki~v~G~~~~GKSsli~~l~~~~ 47 (191)
T 3dz8_A 25 KLLIIGNSSVGKTSFLFRYADDT 47 (191)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHT
T ss_pred EEEEECCCCcCHHHHHHHHhcCC
Confidence 59999999999999999999865
No 332
>1xti_A Probable ATP-dependent RNA helicase P47; alpha-beta fold, gene regulation; 1.95A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 1xtj_A* 1xtk_A
Probab=91.57 E-value=0.66 Score=50.66 Aligned_cols=58 Identities=22% Similarity=0.252 Sum_probs=34.8
Q ss_pred CCCCcccCcHHHHHHHHHHHHhhcChhHHHhcC---CCCCceeEecCCCCCChHHHHHHHHHH
Q 035561 452 IPLKDFASVESMREEINEVVAFLQNPSAFQEMG---ARAPRGVLIVGERGTGKTSLALAIAAE 511 (979)
Q Consensus 452 ~~f~DIvGleevke~L~eiV~~L~~p~~f~~lG---~~~P~gVLL~GPPGTGKTtLArAlA~e 511 (979)
.+|+++.-.+.+.+.|.+. -+..+..++... +...+++++.+|+|+|||..+-..+-.
T Consensus 8 ~~f~~~~l~~~l~~~l~~~--g~~~~~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~~~~~~ 68 (391)
T 1xti_A 8 SGFRDFLLKPELLRAIVDC--GFEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLATLQ 68 (391)
T ss_dssp -CGGGGCCCHHHHHHHHHH--SCCSCCHHHHHHHHHHTTTCCEEEECSSCSSHHHHHHHHHHH
T ss_pred CChhhcCCCHHHHHHHHHC--CCCCCCHHHHHHHHHHhcCCcEEEECCCCCcHHHHHHHHHHH
Confidence 4588887777777776542 133333332221 112367999999999999876544443
No 333
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=91.56 E-value=0.094 Score=57.45 Aligned_cols=26 Identities=35% Similarity=0.422 Sum_probs=23.1
Q ss_pred CCceeEecCCCCCChHHHHHHHHHHc
Q 035561 487 APRGVLIVGERGTGKTSLALAIAAEA 512 (979)
Q Consensus 487 ~P~gVLL~GPPGTGKTtLArAlA~el 512 (979)
.|.-+.|.||+||||||+++.+|+.+
T Consensus 101 ~g~vi~lvG~nGsGKTTll~~Lagll 126 (304)
T 1rj9_A 101 KGRVVLVVGVNGVGKTTTIAKLGRYY 126 (304)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHH
Confidence 45678899999999999999999876
No 334
>4i1u_A Dephospho-COA kinase; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.05A {Burkholderia vietnamiensis} PDB: 4i1v_A*
Probab=91.47 E-value=0.096 Score=54.60 Aligned_cols=31 Identities=29% Similarity=0.424 Sum_probs=26.6
Q ss_pred ceeEecCCCCCChHHHHHHHHHHcCCCEEEee
Q 035561 489 RGVLIVGERGTGKTSLALAIAAEARVPVVNVE 520 (979)
Q Consensus 489 ~gVLL~GPPGTGKTtLArAlA~elg~~~i~Is 520 (979)
..|-|+|..||||||+++.++. +|.+++..+
T Consensus 10 ~~iglTGgigsGKStv~~~l~~-~g~~vidaD 40 (210)
T 4i1u_A 10 YAIGLTGGIGSGKTTVADLFAA-RGASLVDTD 40 (210)
T ss_dssp CEEEEECCTTSCHHHHHHHHHH-TTCEEEEHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH-CCCcEEECc
Confidence 3588999999999999999998 998887544
No 335
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=91.42 E-value=0.11 Score=52.37 Aligned_cols=25 Identities=24% Similarity=0.190 Sum_probs=21.8
Q ss_pred CceeEecCCCCCChHHHHHHHHHHc
Q 035561 488 PRGVLIVGERGTGKTSLALAIAAEA 512 (979)
Q Consensus 488 P~gVLL~GPPGTGKTtLArAlA~el 512 (979)
..-+.|.|++|+||||+++.++..+
T Consensus 6 ~~~i~i~G~sGsGKTTl~~~l~~~l 30 (174)
T 1np6_A 6 IPLLAFAAWSGTGKTTLLKKLIPAL 30 (174)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred ceEEEEEeCCCCCHHHHHHHHHHhc
Confidence 3458899999999999999999874
No 336
>3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A* 2j3e_A*
Probab=91.40 E-value=0.5 Score=49.86 Aligned_cols=25 Identities=32% Similarity=0.529 Sum_probs=22.1
Q ss_pred CceeEecCCCCCChHHHHHHHHHHc
Q 035561 488 PRGVLIVGERGTGKTSLALAIAAEA 512 (979)
Q Consensus 488 P~gVLL~GPPGTGKTtLArAlA~el 512 (979)
+..|++.|.+|+|||+|+.++.+.-
T Consensus 36 ~~~I~lvG~~g~GKSSLin~l~~~~ 60 (262)
T 3def_A 36 SMTVLVLGKGGVGKSSTVNSLIGEQ 60 (262)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHTSC
T ss_pred CcEEEEECCCCCCHHHHHHHHhCCC
Confidence 4569999999999999999998754
No 337
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=91.34 E-value=0.097 Score=51.64 Aligned_cols=24 Identities=33% Similarity=0.367 Sum_probs=21.7
Q ss_pred eeEecCCCCCChHHHHHHHHHHcC
Q 035561 490 GVLIVGERGTGKTSLALAIAAEAR 513 (979)
Q Consensus 490 gVLL~GPPGTGKTtLArAlA~elg 513 (979)
-.+|+||.|+|||++++||+..++
T Consensus 28 ~~~i~G~NGsGKStll~ai~~~l~ 51 (182)
T 3kta_A 28 FTAIVGANGSGKSNIGDAILFVLG 51 (182)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHTT
T ss_pred cEEEECCCCCCHHHHHHHHHHHHc
Confidence 467999999999999999998775
No 338
>1sky_E F1-ATPase, F1-ATP synthase; F1FO ATP synthase, alpha3BETA3 SUBC F1-ATPase, hydrolase; 3.20A {Bacillus SP} SCOP: a.69.1.1 b.49.1.1 c.37.1.11
Probab=91.34 E-value=0.082 Score=61.44 Aligned_cols=24 Identities=25% Similarity=0.356 Sum_probs=20.9
Q ss_pred ceeEecCCCCCChHHHHHHHHHHc
Q 035561 489 RGVLIVGERGTGKTSLALAIAAEA 512 (979)
Q Consensus 489 ~gVLL~GPPGTGKTtLArAlA~el 512 (979)
..++|.||||+|||+|+..++...
T Consensus 152 q~~~i~G~sGvGKTtL~~~l~~~~ 175 (473)
T 1sky_E 152 GKIGLFGGAGVGKTVLIQELIHNI 175 (473)
T ss_dssp CEEEEECCSSSCHHHHHHHHHHHH
T ss_pred CEEEEECCCCCCccHHHHHHHhhh
Confidence 358999999999999999887754
No 339
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=91.29 E-value=0.065 Score=56.34 Aligned_cols=28 Identities=25% Similarity=0.387 Sum_probs=23.2
Q ss_pred CCCceeEecCCCCCChHHHHHHHHHHcC
Q 035561 486 RAPRGVLIVGERGTGKTSLALAIAAEAR 513 (979)
Q Consensus 486 ~~P~gVLL~GPPGTGKTtLArAlA~elg 513 (979)
....-+.|.||+|+|||||++++++...
T Consensus 29 ~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~ 56 (235)
T 3tif_A 29 KEGEFVSIMGPSGSGKSTMLNIIGCLDK 56 (235)
T ss_dssp CTTCEEEEECSTTSSHHHHHHHHTTSSC
T ss_pred cCCCEEEEECCCCCcHHHHHHHHhcCCC
Confidence 4445688999999999999999997653
No 340
>1bif_A 6-phosphofructo-2-kinase/ fructose-2,6-bisphospha; transferase (phospho), phosphatase, hydrolase (phosp glycolysis, bifunctional enzyme; HET: AGS; 2.00A {Rattus norvegicus} SCOP: c.37.1.7 c.60.1.4 PDB: 3bif_A* 2bif_A* 1k6m_A* 1c80_A* 1c7z_A* 1c81_A* 1tip_A* 1fbt_A
Probab=91.26 E-value=0.058 Score=62.31 Aligned_cols=28 Identities=21% Similarity=0.342 Sum_probs=24.5
Q ss_pred CCceeEecCCCCCChHHHHHHHHHHcCC
Q 035561 487 APRGVLIVGERGTGKTSLALAIAAEARV 514 (979)
Q Consensus 487 ~P~gVLL~GPPGTGKTtLArAlA~elg~ 514 (979)
.|..|+|.|.||+||||+++.++..++.
T Consensus 38 ~~~~IvlvGlpGsGKSTia~~La~~l~~ 65 (469)
T 1bif_A 38 CPTLIVMVGLPARGKTYISKKLTRYLNF 65 (469)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHHH
T ss_pred CcEEEEEECCCCCCHHHHHHHHHHHHhc
Confidence 4567999999999999999999998753
No 341
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=91.25 E-value=0.066 Score=56.37 Aligned_cols=28 Identities=39% Similarity=0.433 Sum_probs=23.2
Q ss_pred CCCCceeEecCCCCCChHHHHHHHHHHc
Q 035561 485 ARAPRGVLIVGERGTGKTSLALAIAAEA 512 (979)
Q Consensus 485 ~~~P~gVLL~GPPGTGKTtLArAlA~el 512 (979)
++...-+.|.||+|+|||||++++++..
T Consensus 28 i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 55 (237)
T 2cbz_A 28 IPEGALVAVVGQVGCGKSSLLSALLAEM 55 (237)
T ss_dssp ECTTCEEEEECSTTSSHHHHHHHHTTCS
T ss_pred ECCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 3444568899999999999999999754
No 342
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...
Probab=91.20 E-value=0.97 Score=42.71 Aligned_cols=23 Identities=26% Similarity=0.465 Sum_probs=20.3
Q ss_pred eeEecCCCCCChHHHHHHHHHHc
Q 035561 490 GVLIVGERGTGKTSLALAIAAEA 512 (979)
Q Consensus 490 gVLL~GPPGTGKTtLArAlA~el 512 (979)
.|++.|++|+|||+|+.++....
T Consensus 2 ki~~~G~~~~GKssl~~~l~~~~ 24 (164)
T 1r8s_A 2 RILMVGLDAAGKTTILYKLKLGE 24 (164)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 38999999999999999998753
No 343
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=91.16 E-value=0.085 Score=54.58 Aligned_cols=23 Identities=43% Similarity=0.518 Sum_probs=20.6
Q ss_pred ceeEecCCCCCChHHHHHHHHHH
Q 035561 489 RGVLIVGERGTGKTSLALAIAAE 511 (979)
Q Consensus 489 ~gVLL~GPPGTGKTtLArAlA~e 511 (979)
.-+.|.||+|+|||||++++++.
T Consensus 23 e~~~liG~nGsGKSTLl~~l~Gl 45 (208)
T 3b85_A 23 TIVFGLGPAGSGKTYLAMAKAVQ 45 (208)
T ss_dssp SEEEEECCTTSSTTHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHhcC
Confidence 34789999999999999999985
No 344
>2j0s_A ATP-dependent RNA helicase DDX48; mRNA processing, phosphorylation, rRNA processing, mRNA splicing, mRNA transport; HET: ANP; 2.21A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 2j0q_A* 2hyi_C* 3ex7_C* 2xb2_A* 2hxy_A 2j0u_A 2j0u_B 2zu6_A
Probab=91.12 E-value=0.51 Score=52.22 Aligned_cols=57 Identities=23% Similarity=0.232 Sum_probs=34.8
Q ss_pred CCCCCcccCcHHHHHHHHHHHHhhcChhHHHhcCC---CCCceeEecCCCCCChHHHHHHHH
Q 035561 451 PIPLKDFASVESMREEINEVVAFLQNPSAFQEMGA---RAPRGVLIVGERGTGKTSLALAIA 509 (979)
Q Consensus 451 ~~~f~DIvGleevke~L~eiV~~L~~p~~f~~lG~---~~P~gVLL~GPPGTGKTtLArAlA 509 (979)
..+|+++.-.+.+.+.|... -+..+..++...+ ...+++++.+|+|+|||..+-..+
T Consensus 36 ~~~f~~~~l~~~l~~~l~~~--g~~~~~~~Q~~ai~~i~~~~~~lv~a~TGsGKT~~~~~~~ 95 (410)
T 2j0s_A 36 TPTFDTMGLREDLLRGIYAY--GFEKPSAIQQRAIKQIIKGRDVIAQSQSGTGKTATFSISV 95 (410)
T ss_dssp CCSGGGGCCCHHHHHHHHHH--TCCSCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHH
T ss_pred CCCHhhcCCCHHHHHHHHHc--CCCCCCHHHHHHHHHHhCCCCEEEECCCCCCchHHHHHHH
Confidence 45788887777777776532 1333333332211 123579999999999997655443
No 345
>3ber_A Probable ATP-dependent RNA helicase DDX47; DEAD, AMP, structural genomics, structural GEN consortium, SGC, ATP-binding, hydrolase; HET: AMP PGE; 1.40A {Homo sapiens}
Probab=91.11 E-value=0.46 Score=49.77 Aligned_cols=53 Identities=23% Similarity=0.324 Sum_probs=32.4
Q ss_pred CCCCcccCcHHHHHHHHHHHHhhcChhHHHhcC---CCCCceeEecCCCCCChHHHHH
Q 035561 452 IPLKDFASVESMREEINEVVAFLQNPSAFQEMG---ARAPRGVLIVGERGTGKTSLAL 506 (979)
Q Consensus 452 ~~f~DIvGleevke~L~eiV~~L~~p~~f~~lG---~~~P~gVLL~GPPGTGKTtLAr 506 (979)
.+|+++.-.+.+.+.|...- +..+..++... +...+++++.+|+|+|||+.+-
T Consensus 43 ~~f~~l~l~~~l~~~l~~~g--~~~~~~~Q~~~i~~i~~~~~~lv~a~TGsGKT~~~~ 98 (249)
T 3ber_A 43 KTFKDLGVTDVLCEACDQLG--WTKPTKIQIEAIPLALQGRDIIGLAETGSGKTGAFA 98 (249)
T ss_dssp CCTGGGTCCHHHHHHHHHTT--CCSCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHH
T ss_pred CCHHHcCCCHHHHHHHHHcC--CCCCCHHHHHHHHHHhCCCCEEEEcCCCCCchhHhH
Confidence 56888876676666665311 22333333221 1123679999999999998643
No 346
>3tqf_A HPR(Ser) kinase; transferase, hydrolase; 2.80A {Coxiella burnetii}
Probab=91.11 E-value=0.11 Score=53.02 Aligned_cols=28 Identities=39% Similarity=0.582 Sum_probs=23.4
Q ss_pred CceeEecCCCCCChHHHHHHHHHHcCCCE
Q 035561 488 PRGVLIVGERGTGKTSLALAIAAEARVPV 516 (979)
Q Consensus 488 P~gVLL~GPPGTGKTtLArAlA~elg~~~ 516 (979)
..|+||.|++|+||||+|.++... |..+
T Consensus 16 G~gvli~G~SGaGKStlal~L~~r-G~~l 43 (181)
T 3tqf_A 16 KMGVLITGEANIGKSELSLALIDR-GHQL 43 (181)
T ss_dssp TEEEEEEESSSSSHHHHHHHHHHT-TCEE
T ss_pred CEEEEEEcCCCCCHHHHHHHHHHc-CCeE
Confidence 468999999999999999999874 4433
No 347
>2va8_A SSO2462, SKI2-type helicase; hydrolase, DNA repair, ATP-bindin nucleotide-binding; 2.30A {Sulfolobus solfataricus}
Probab=91.03 E-value=0.61 Score=56.28 Aligned_cols=57 Identities=21% Similarity=0.269 Sum_probs=34.3
Q ss_pred CCCCCCcccCcHHHHHHHHHHHHhhcChhHHHh--c--CCCCCceeEecCCCCCChHHHHHHH
Q 035561 450 PPIPLKDFASVESMREEINEVVAFLQNPSAFQE--M--GARAPRGVLIVGERGTGKTSLALAI 508 (979)
Q Consensus 450 ~~~~f~DIvGleevke~L~eiV~~L~~p~~f~~--l--G~~~P~gVLL~GPPGTGKTtLArAl 508 (979)
.+.+|+++.-.+.+++.+... . +..+..++. + ++....++++.||+|+|||+.+-..
T Consensus 6 ~~~~~~~l~l~~~~~~~l~~~-g-~~~l~~~Q~~~i~~~~~~~~~~lv~apTGsGKT~~~~l~ 66 (715)
T 2va8_A 6 EWMPIEDLKLPSNVIEIIKKR-G-IKKLNPPQTEAVKKGLLEGNRLLLTSPTGSGKTLIAEMG 66 (715)
T ss_dssp CCCBGGGSSSCHHHHHHHHTT-S-CCBCCHHHHHHHHTTTTTTCCEEEECCTTSCHHHHHHHH
T ss_pred ccCcHHHcCCCHHHHHHHHhC-C-CCCCCHHHHHHHHHHhcCCCcEEEEcCCCCcHHHHHHHH
Confidence 345788887666666655531 1 211111111 1 2344678999999999999987433
No 348
>1fuu_A Yeast initiation factor 4A; IF4A, helicase, DEAD-box protein, translation; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 2vso_A* 2vsx_A*
Probab=90.96 E-value=0.43 Score=52.13 Aligned_cols=56 Identities=23% Similarity=0.224 Sum_probs=34.7
Q ss_pred CCCCCCCcccCcHHHHHHHHHHHHhhcChhHHHhcCC---CCCceeEecCCCCCChHHHHH
Q 035561 449 NPPIPLKDFASVESMREEINEVVAFLQNPSAFQEMGA---RAPRGVLIVGERGTGKTSLAL 506 (979)
Q Consensus 449 ~~~~~f~DIvGleevke~L~eiV~~L~~p~~f~~lG~---~~P~gVLL~GPPGTGKTtLAr 506 (979)
.+..+|+++.-.+.+.+.|... -+..+..++...+ ...+++++.+|+|+|||..+-
T Consensus 18 ~~~~~f~~~~l~~~l~~~l~~~--g~~~~~~~Q~~~i~~i~~~~~~lv~~~TGsGKT~~~~ 76 (394)
T 1fuu_A 18 KVVYKFDDMELDENLLRGVFGY--GFEEPSAIQQRAIMPIIEGHDVLAQAQSGTGKTGTFS 76 (394)
T ss_dssp CCCCSSGGGCCCHHHHHHHHHH--TCCSCCHHHHHHHHHHHHTCCEEECCCSSHHHHHHHH
T ss_pred cccCChhhcCCCHHHHHHHHHc--CCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHH
Confidence 4456799987777777777642 1223332322211 113569999999999998743
No 349
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=90.95 E-value=0.084 Score=55.84 Aligned_cols=27 Identities=22% Similarity=0.302 Sum_probs=23.0
Q ss_pred CCCCceeEecCCCCCChHHHHHHHHHHc
Q 035561 485 ARAPRGVLIVGERGTGKTSLALAIAAEA 512 (979)
Q Consensus 485 ~~~P~gVLL~GPPGTGKTtLArAlA~el 512 (979)
++. .-+.|.||+|+|||||++++++-.
T Consensus 22 i~~-e~~~liG~nGsGKSTLl~~l~Gl~ 48 (240)
T 2onk_A 22 MGR-DYCVLLGPTGAGKSVFLELIAGIV 48 (240)
T ss_dssp ECS-SEEEEECCTTSSHHHHHHHHHTSS
T ss_pred ECC-EEEEEECCCCCCHHHHHHHHhCCC
Confidence 445 667899999999999999999864
No 350
>3sqw_A ATP-dependent RNA helicase MSS116, mitochondrial; RECA fold, RNA dependent ATPase, RNA helicase; HET: ANP; 1.91A {Saccharomyces cerevisiae S288C}
Probab=90.82 E-value=0.34 Score=57.08 Aligned_cols=19 Identities=32% Similarity=0.352 Sum_probs=15.9
Q ss_pred CCceeEecCCCCCChHHHH
Q 035561 487 APRGVLIVGERGTGKTSLA 505 (979)
Q Consensus 487 ~P~gVLL~GPPGTGKTtLA 505 (979)
..+.+++.+|+|+|||+.+
T Consensus 59 ~~~dvlv~apTGsGKTl~~ 77 (579)
T 3sqw_A 59 EDHDVIARAKTGTGKTFAF 77 (579)
T ss_dssp SSEEEEEECCTTSCHHHHH
T ss_pred CCCeEEEEcCCCcHHHHHH
Confidence 3568999999999999853
No 351
>1gm5_A RECG; helicase, replication restart; HET: DNA ADP; 3.24A {Thermotoga maritima} SCOP: a.24.21.1 b.40.4.9 c.37.1.19 c.37.1.19
Probab=90.80 E-value=0.9 Score=55.99 Aligned_cols=37 Identities=22% Similarity=0.301 Sum_probs=26.1
Q ss_pred CCCceeEecCCCCCChHHHHHHHHHHc---CCCEEEeech
Q 035561 486 RAPRGVLIVGERGTGKTSLALAIAAEA---RVPVVNVEAQ 522 (979)
Q Consensus 486 ~~P~gVLL~GPPGTGKTtLArAlA~el---g~~~i~Is~s 522 (979)
..|.++|+.||.|+|||..+-..+-.. |...+.+...
T Consensus 387 ~~~~~~Ll~a~TGSGKTlvall~il~~l~~g~qvlvlaPt 426 (780)
T 1gm5_A 387 EKPMNRLLQGDVGSGKTVVAQLAILDNYEAGFQTAFMVPT 426 (780)
T ss_dssp SSCCCCEEECCSSSSHHHHHHHHHHHHHHHTSCEEEECSC
T ss_pred cCCCcEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEEEeCc
Confidence 345689999999999999776554433 5555555543
No 352
>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}
Probab=90.72 E-value=0.072 Score=63.18 Aligned_cols=38 Identities=29% Similarity=0.316 Sum_probs=29.5
Q ss_pred CCceeEecCCCCCChHHHHHHHHHHcC----CCEEEeechhh
Q 035561 487 APRGVLIVGERGTGKTSLALAIAAEAR----VPVVNVEAQEL 524 (979)
Q Consensus 487 ~P~gVLL~GPPGTGKTtLArAlA~elg----~~~i~Is~sdL 524 (979)
.+..+.|.|++||||||++++||+.++ .++..+++.++
T Consensus 368 ~G~iI~LiG~sGSGKSTLar~La~~L~~~~G~~i~~lDgD~~ 409 (552)
T 3cr8_A 368 QGFTVFFTGLSGAGKSTLARALAARLMEMGGRCVTLLDGDIV 409 (552)
T ss_dssp SCEEEEEEESSCHHHHHHHHHHHHHHHTTCSSCEEEESSHHH
T ss_pred cceEEEEECCCCChHHHHHHHHHHhhcccCCceEEEECCcHH
Confidence 345688999999999999999999885 34545666554
No 353
>3fmo_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 2.51A {Homo sapiens}
Probab=90.67 E-value=1.1 Score=48.38 Aligned_cols=53 Identities=21% Similarity=0.305 Sum_probs=33.4
Q ss_pred CCCCCcccCcHHHHHHHHHHHHhhcChhHHHhc-----CCCCCceeEecCCCCCChHHHH
Q 035561 451 PIPLKDFASVESMREEINEVVAFLQNPSAFQEM-----GARAPRGVLIVGERGTGKTSLA 505 (979)
Q Consensus 451 ~~~f~DIvGleevke~L~eiV~~L~~p~~f~~l-----G~~~P~gVLL~GPPGTGKTtLA 505 (979)
..+|+++.-.+.+.+.|... -+..|..++.. -...++++++++|+|||||...
T Consensus 91 ~~~f~~l~l~~~l~~~l~~~--g~~~pt~iQ~~ai~~il~~~~~~~l~~a~TGsGKT~a~ 148 (300)
T 3fmo_B 91 VKSFEELRLKPQLLQGVYAM--GFNRPSKIQENALPLMLAEPPQNLIAQSQSGTGKTAAF 148 (300)
T ss_dssp CCCSGGGTCCHHHHHHHHHT--TCCSCCHHHHHHHHHHTSSSCCCEEEECCTTSSHHHHH
T ss_pred cCCHhhcCCCHHHHHHHHHc--CCCCCCHHHHHHHHHHHcCCCCeEEEECCCCCCccHHH
Confidence 35788887777776666531 13333333221 1123578999999999999864
No 354
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=90.66 E-value=0.39 Score=53.14 Aligned_cols=27 Identities=26% Similarity=0.227 Sum_probs=22.6
Q ss_pred CCCceeEecCCCCCChHHHHHHHHHHc
Q 035561 486 RAPRGVLIVGERGTGKTSLALAIAAEA 512 (979)
Q Consensus 486 ~~P~gVLL~GPPGTGKTtLArAlA~el 512 (979)
....-+.|.||||+|||||.+++++.+
T Consensus 53 ~~g~~v~i~G~~GaGKSTLl~~l~g~~ 79 (337)
T 2qm8_A 53 GRAIRVGITGVPGVGKSTTIDALGSLL 79 (337)
T ss_dssp CCSEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHhh
Confidence 334558899999999999999999865
No 355
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=90.64 E-value=0.062 Score=56.04 Aligned_cols=26 Identities=27% Similarity=0.385 Sum_probs=22.0
Q ss_pred CCceeEecCCCCCChHHHHHHHHHHc
Q 035561 487 APRGVLIVGERGTGKTSLALAIAAEA 512 (979)
Q Consensus 487 ~P~gVLL~GPPGTGKTtLArAlA~el 512 (979)
...-+.|.||+|+|||||++++++-.
T Consensus 29 ~Ge~~~iiG~nGsGKSTLl~~l~Gl~ 54 (224)
T 2pcj_A 29 KGEFVSIIGASGSGKSTLLYILGLLD 54 (224)
T ss_dssp TTCEEEEEECTTSCHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 34457899999999999999999755
No 356
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=90.61 E-value=0.083 Score=56.50 Aligned_cols=28 Identities=29% Similarity=0.452 Sum_probs=23.0
Q ss_pred CCCceeEecCCCCCChHHHHHHHHHHcC
Q 035561 486 RAPRGVLIVGERGTGKTSLALAIAAEAR 513 (979)
Q Consensus 486 ~~P~gVLL~GPPGTGKTtLArAlA~elg 513 (979)
+...-+.|.||+|+|||||++++++-..
T Consensus 30 ~~Ge~~~liG~nGsGKSTLlk~l~Gl~~ 57 (262)
T 1b0u_A 30 RAGDVISIIGSSGSGKSTFLRCINFLEK 57 (262)
T ss_dssp CTTCEEEEECCTTSSHHHHHHHHTTSSC
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence 3444578999999999999999998653
No 357
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=90.57 E-value=0.081 Score=55.83 Aligned_cols=28 Identities=18% Similarity=0.229 Sum_probs=23.2
Q ss_pred CCCCceeEecCCCCCChHHHHHHHHHHc
Q 035561 485 ARAPRGVLIVGERGTGKTSLALAIAAEA 512 (979)
Q Consensus 485 ~~~P~gVLL~GPPGTGKTtLArAlA~el 512 (979)
++...-+.|.||+|+|||||++++++..
T Consensus 25 i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 52 (243)
T 1mv5_A 25 AQPNSIIAFAGPSGGGKSTIFSLLERFY 52 (243)
T ss_dssp ECTTEEEEEECCTTSSHHHHHHHHTTSS
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 3444568899999999999999999754
No 358
>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*
Probab=90.51 E-value=0.18 Score=52.23 Aligned_cols=32 Identities=22% Similarity=0.164 Sum_probs=25.3
Q ss_pred CceeEecCCCCCChHHHHHHHHHHc---CCCEEEe
Q 035561 488 PRGVLIVGERGTGKTSLALAIAAEA---RVPVVNV 519 (979)
Q Consensus 488 P~gVLL~GPPGTGKTtLArAlA~el---g~~~i~I 519 (979)
+.-|.|.|++|+||||+++.++..+ +.+++.+
T Consensus 6 g~~i~~eG~~gsGKsT~~~~l~~~l~~~~~~v~~~ 40 (213)
T 4edh_A 6 GLFVTLEGPEGAGKSTNRDYLAERLRERGIEVQLT 40 (213)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHHHTTTCCEEEE
T ss_pred ceEEEEEcCCCCCHHHHHHHHHHHHHHcCCCcccc
Confidence 3457788999999999999999987 4555543
No 359
>3i5x_A ATP-dependent RNA helicase MSS116; protein-RNA complex, RNA helicase, DEAD-BOX, ATP-binding, HE hydrolase, mitochondrion; HET: ANP; 1.90A {Saccharomyces cerevisiae} PDB: 3i5y_A* 3i61_A* 3i62_A* 3sqx_A* 4db2_A 4db4_A
Probab=90.49 E-value=0.38 Score=56.03 Aligned_cols=18 Identities=33% Similarity=0.414 Sum_probs=15.7
Q ss_pred CCceeEecCCCCCChHHH
Q 035561 487 APRGVLIVGERGTGKTSL 504 (979)
Q Consensus 487 ~P~gVLL~GPPGTGKTtL 504 (979)
..+.+|+.+|+|+|||+.
T Consensus 110 ~~~~~lv~apTGsGKTl~ 127 (563)
T 3i5x_A 110 EDHDVIARAKTGTGKTFA 127 (563)
T ss_dssp SSEEEEEECCTTSCHHHH
T ss_pred CCCeEEEECCCCCCccHH
Confidence 357899999999999985
No 360
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=90.38 E-value=0.15 Score=51.39 Aligned_cols=32 Identities=31% Similarity=0.249 Sum_probs=25.0
Q ss_pred ceeEecCCCCCChHHHHHHHHHHc---CCCEEEee
Q 035561 489 RGVLIVGERGTGKTSLALAIAAEA---RVPVVNVE 520 (979)
Q Consensus 489 ~gVLL~GPPGTGKTtLArAlA~el---g~~~i~Is 520 (979)
.-+.+.|++|+||||++..++..+ |..+..+.
T Consensus 5 ~~i~i~G~sGsGKTTl~~~L~~~l~~~g~~v~~ik 39 (169)
T 1xjc_A 5 NVWQVVGYKHSGKTTLMEKWVAAAVREGWRVGTVK 39 (169)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred EEEEEECCCCCCHHHHHHHHHHhhHhcCCeeeEEE
Confidence 458899999999999999999875 44444443
No 361
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=90.29 E-value=0.13 Score=51.47 Aligned_cols=23 Identities=26% Similarity=0.579 Sum_probs=20.9
Q ss_pred eeEecCCCCCChHHHHHHHHHHc
Q 035561 490 GVLIVGERGTGKTSLALAIAAEA 512 (979)
Q Consensus 490 gVLL~GPPGTGKTtLArAlA~el 512 (979)
.+.|.|++|+|||||++++++..
T Consensus 7 kv~lvG~~g~GKSTLl~~l~~~~ 29 (199)
T 2f9l_A 7 KVVLIGDSGVGKSNLLSRFTRNE 29 (199)
T ss_dssp EEEEESSTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHhcCC
Confidence 48999999999999999999863
No 362
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=90.29 E-value=0.11 Score=55.79 Aligned_cols=27 Identities=26% Similarity=0.455 Sum_probs=22.8
Q ss_pred CCCCceeEecCCCCCChHHHHHHHHHH
Q 035561 485 ARAPRGVLIVGERGTGKTSLALAIAAE 511 (979)
Q Consensus 485 ~~~P~gVLL~GPPGTGKTtLArAlA~e 511 (979)
++...-+.|.||.|+|||||++.+++.
T Consensus 43 i~~Ge~~~l~G~NGsGKSTLlk~l~Gl 69 (267)
T 2zu0_C 43 VHPGEVHAIMGPNGSGKSTLSATLAGR 69 (267)
T ss_dssp ECTTCEEEEECCTTSSHHHHHHHHHTC
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 344456889999999999999999985
No 363
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=90.21 E-value=0.093 Score=56.05 Aligned_cols=28 Identities=21% Similarity=0.299 Sum_probs=23.5
Q ss_pred CCCCceeEecCCCCCChHHHHHHHHHHc
Q 035561 485 ARAPRGVLIVGERGTGKTSLALAIAAEA 512 (979)
Q Consensus 485 ~~~P~gVLL~GPPGTGKTtLArAlA~el 512 (979)
++...-+.|.||+|+|||||++++++..
T Consensus 43 i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 70 (260)
T 2ghi_A 43 IPSGTTCALVGHTGSGKSTIAKLLYRFY 70 (260)
T ss_dssp ECTTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred ECCCCEEEEECCCCCCHHHHHHHHhccC
Confidence 3445568899999999999999999765
No 364
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=90.21 E-value=0.13 Score=48.89 Aligned_cols=23 Identities=22% Similarity=0.368 Sum_probs=20.8
Q ss_pred ceeEecCCCCCChHHHHHHHHHH
Q 035561 489 RGVLIVGERGTGKTSLALAIAAE 511 (979)
Q Consensus 489 ~gVLL~GPPGTGKTtLArAlA~e 511 (979)
..|++.|++|+|||+|+.++.+.
T Consensus 6 ~~i~v~G~~~~GKssl~~~l~~~ 28 (168)
T 1z2a_A 6 IKMVVVGNGAVGKSSMIQRYCKG 28 (168)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHC
T ss_pred EEEEEECcCCCCHHHHHHHHHcC
Confidence 45899999999999999999874
No 365
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}
Probab=90.16 E-value=0.49 Score=48.87 Aligned_cols=24 Identities=25% Similarity=0.497 Sum_probs=21.4
Q ss_pred ceeEecCCCCCChHHHHHHHHHHc
Q 035561 489 RGVLIVGERGTGKTSLALAIAAEA 512 (979)
Q Consensus 489 ~gVLL~GPPGTGKTtLArAlA~el 512 (979)
..|+|.|++|+|||+|+.++.+..
T Consensus 30 ~~i~lvG~~g~GKStlin~l~g~~ 53 (239)
T 3lxx_A 30 LRIVLVGKTGAGKSATGNSILGRK 53 (239)
T ss_dssp EEEEEECCTTSSHHHHHHHHHTSC
T ss_pred eEEEEECCCCCCHHHHHHHHcCCC
Confidence 469999999999999999998743
No 366
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=90.14 E-value=0.057 Score=61.63 Aligned_cols=46 Identities=22% Similarity=0.218 Sum_probs=39.6
Q ss_pred hhhhhhhhhhhhcCccccHHHHHHHHHhhhccc--------cccccccccCCCC
Q 035561 713 IVKKISRMLVDHLGLTLTKEDLQNVVDLMEPYG--------QISNGIELLTPPL 758 (979)
Q Consensus 713 llk~~~v~w~DiGGl~vtkedL~eAIe~~~kyg--------~i~aG~e~~sp~l 758 (979)
..++|++.|+|+||+...+++|+++|++|.+++ +...|+.+++||+
T Consensus 139 ~~~~p~v~~~dIgGl~~~k~~l~e~v~~Pl~~pe~f~~~gi~~prGvLL~GPPG 192 (405)
T 4b4t_J 139 VEKVPDSTYDMVGGLTKQIKEIKEVIELPVKHPELFESLGIAQPKGVILYGPPG 192 (405)
T ss_dssp EECSCSCCGGGSCSCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCCCEEEESCSS
T ss_pred ccCCCCCCHHHhCCHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCceEEeCCCC
Confidence 456799999999999999999999999876553 3367999999998
No 367
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=90.12 E-value=0.096 Score=56.35 Aligned_cols=29 Identities=21% Similarity=0.323 Sum_probs=23.8
Q ss_pred CCCCceeEecCCCCCChHHHHHHHHHHcC
Q 035561 485 ARAPRGVLIVGERGTGKTSLALAIAAEAR 513 (979)
Q Consensus 485 ~~~P~gVLL~GPPGTGKTtLArAlA~elg 513 (979)
++...-+.|.||+|+|||||++++++...
T Consensus 42 i~~Ge~~~i~G~nGsGKSTLlk~l~Gl~~ 70 (271)
T 2ixe_A 42 LYPGKVTALVGPNGSGKSTVAALLQNLYQ 70 (271)
T ss_dssp ECTTCEEEEECSTTSSHHHHHHHHTTSSC
T ss_pred ECCCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence 34445688999999999999999998653
No 368
>3oiy_A Reverse gyrase helicase domain; topoisomerase, DNA supercoiling, archaea, isomeras; 2.35A {Thermotoga maritima} PDB: 3p4y_A 3p4x_A*
Probab=90.07 E-value=0.39 Score=53.56 Aligned_cols=22 Identities=27% Similarity=0.504 Sum_probs=17.1
Q ss_pred ceeEecCCCCCChHHHHHHHHH
Q 035561 489 RGVLIVGERGTGKTSLALAIAA 510 (979)
Q Consensus 489 ~gVLL~GPPGTGKTtLArAlA~ 510 (979)
+++++.+|+|+|||+.+-..+.
T Consensus 37 ~~~lv~apTGsGKT~~~l~~~~ 58 (414)
T 3oiy_A 37 KSFTMVAPTGVGKTTFGMMTAL 58 (414)
T ss_dssp CCEECCSCSSSSHHHHHHHHHH
T ss_pred CCEEEEeCCCCCHHHHHHHHHH
Confidence 5799999999999995544433
No 369
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=90.04 E-value=0.085 Score=56.18 Aligned_cols=26 Identities=31% Similarity=0.465 Sum_probs=22.1
Q ss_pred CceeEecCCCCCChHHHHHHHHHHcC
Q 035561 488 PRGVLIVGERGTGKTSLALAIAAEAR 513 (979)
Q Consensus 488 P~gVLL~GPPGTGKTtLArAlA~elg 513 (979)
..-+.|.||.|+|||||++++++-..
T Consensus 33 Ge~~~liG~nGsGKSTLlk~l~Gl~~ 58 (257)
T 1g6h_A 33 GDVTLIIGPNGSGKSTLINVITGFLK 58 (257)
T ss_dssp TCEEEEECSTTSSHHHHHHHHTTSSC
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 34578999999999999999998653
No 370
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=90.03 E-value=0.1 Score=56.08 Aligned_cols=28 Identities=21% Similarity=0.420 Sum_probs=23.1
Q ss_pred CCCCceeEecCCCCCChHHHHHHHHHHc
Q 035561 485 ARAPRGVLIVGERGTGKTSLALAIAAEA 512 (979)
Q Consensus 485 ~~~P~gVLL~GPPGTGKTtLArAlA~el 512 (979)
+....-+.|.||+|+|||||++++++..
T Consensus 47 i~~Gei~~liG~NGsGKSTLlk~l~Gl~ 74 (263)
T 2olj_A 47 IREGEVVVVIGPSGSGKSTFLRCLNLLE 74 (263)
T ss_dssp ECTTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred EcCCCEEEEEcCCCCcHHHHHHHHHcCC
Confidence 3444558899999999999999999865
No 371
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=90.01 E-value=0.087 Score=55.12 Aligned_cols=27 Identities=33% Similarity=0.476 Sum_probs=22.7
Q ss_pred CCCceeEecCCCCCChHHHHHHHHHHc
Q 035561 486 RAPRGVLIVGERGTGKTSLALAIAAEA 512 (979)
Q Consensus 486 ~~P~gVLL~GPPGTGKTtLArAlA~el 512 (979)
+...-+.|.||.|+|||||++++++..
T Consensus 32 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 58 (229)
T 2pze_A 32 ERGQLLAVAGSTGAGKTSLLMMIMGEL 58 (229)
T ss_dssp ETTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 344568899999999999999999765
No 372
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=90.00 E-value=0.1 Score=55.40 Aligned_cols=25 Identities=24% Similarity=0.437 Sum_probs=21.7
Q ss_pred CCceeEecCCCCCChHHHHHHHHHH
Q 035561 487 APRGVLIVGERGTGKTSLALAIAAE 511 (979)
Q Consensus 487 ~P~gVLL~GPPGTGKTtLArAlA~e 511 (979)
...-+.|.||+|+|||||++++++.
T Consensus 28 ~Ge~~~l~G~nGsGKSTLlk~l~Gl 52 (250)
T 2d2e_A 28 KGEVHALMGPNGAGKSTLGKILAGD 52 (250)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHHTC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 3445789999999999999999985
No 373
>3vkw_A Replicase large subunit; alpha/beta domain, helicase, transferase; 1.90A {Tomato mosaic virus}
Probab=89.96 E-value=0.3 Score=56.44 Aligned_cols=24 Identities=33% Similarity=0.343 Sum_probs=19.8
Q ss_pred CceeEecCCCCCChHHHHHHHHHH
Q 035561 488 PRGVLIVGERGTGKTSLALAIAAE 511 (979)
Q Consensus 488 P~gVLL~GPPGTGKTtLArAlA~e 511 (979)
.+-.++.|+||||||++.+.++..
T Consensus 161 ~~v~~I~G~aGsGKTt~I~~~~~~ 184 (446)
T 3vkw_A 161 AKVVLVDGVPGCGKTKEILSRVNF 184 (446)
T ss_dssp SEEEEEEECTTSCHHHHHHHHCCT
T ss_pred ccEEEEEcCCCCCHHHHHHHHhcc
Confidence 345789999999999999888753
No 374
>3v9p_A DTMP kinase, thymidylate kinase; ssgcid, STRU genomics, seattle structural genomics center for infectious transferase; 1.90A {Burkholderia thailandensis}
Probab=89.93 E-value=0.23 Score=52.15 Aligned_cols=25 Identities=20% Similarity=0.182 Sum_probs=18.9
Q ss_pred CceeEecCCCCCChHHHHHHHHHHc
Q 035561 488 PRGVLIVGERGTGKTSLALAIAAEA 512 (979)
Q Consensus 488 P~gVLL~GPPGTGKTtLArAlA~el 512 (979)
+.-|.|.||+|+||||+++.+++.+
T Consensus 25 g~~I~~eG~~GsGKsT~~~~l~~~l 49 (227)
T 3v9p_A 25 GKFITFEGIDGAGKTTHLQWFCDRL 49 (227)
T ss_dssp CCEEEEECCC---CHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHH
Confidence 3447888999999999999999987
No 375
>2gks_A Bifunctional SAT/APS kinase; transferase, sulfurylase; HET: ADP; 2.31A {Aquifex aeolicus}
Probab=89.90 E-value=0.2 Score=59.28 Aligned_cols=37 Identities=19% Similarity=0.180 Sum_probs=29.5
Q ss_pred CceeEecCCCCCChHHHHHHHHHHc---CCCEEEeechhh
Q 035561 488 PRGVLIVGERGTGKTSLALAIAAEA---RVPVVNVEAQEL 524 (979)
Q Consensus 488 P~gVLL~GPPGTGKTtLArAlA~el---g~~~i~Is~sdL 524 (979)
+..|+|+|+||+||||+|+.+++.+ |.++..+++..+
T Consensus 372 ~~~I~l~G~~GsGKSTia~~La~~L~~~G~~~~~ld~D~i 411 (546)
T 2gks_A 372 GFCVWLTGLPCAGKSTIAEILATMLQARGRKVTLLDGDVV 411 (546)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEECHHHH
T ss_pred ceEEEccCCCCCCHHHHHHHHHHHhhhcCCeEEEECchHh
Confidence 4568999999999999999999876 456666665443
No 376
>3ly5_A ATP-dependent RNA helicase DDX18; alpha-beta, structural genomics, structural genomics consort ATP-binding, hydrolase, nucleotide-binding, RNA-B; 2.80A {Homo sapiens}
Probab=89.89 E-value=0.51 Score=49.80 Aligned_cols=18 Identities=39% Similarity=0.560 Sum_probs=15.5
Q ss_pred ceeEecCCCCCChHHHHH
Q 035561 489 RGVLIVGERGTGKTSLAL 506 (979)
Q Consensus 489 ~gVLL~GPPGTGKTtLAr 506 (979)
+.+++.+|+|+|||..+-
T Consensus 92 ~~~lv~a~TGsGKT~~~~ 109 (262)
T 3ly5_A 92 RDLLAAAKTGSGKTLAFL 109 (262)
T ss_dssp CCCEECCCTTSCHHHHHH
T ss_pred CcEEEEccCCCCchHHHH
Confidence 569999999999998654
No 377
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=89.87 E-value=0.15 Score=48.10 Aligned_cols=23 Identities=35% Similarity=0.456 Sum_probs=20.5
Q ss_pred eeEecCCCCCChHHHHHHHHHHc
Q 035561 490 GVLIVGERGTGKTSLALAIAAEA 512 (979)
Q Consensus 490 gVLL~GPPGTGKTtLArAlA~el 512 (979)
.+++.|++|+|||+++.++++..
T Consensus 3 ki~v~G~~~~GKSsli~~l~~~~ 25 (161)
T 2dyk_A 3 KVVIVGRPNVGKSSLFNRLLKKR 25 (161)
T ss_dssp EEEEECCTTSSHHHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 48999999999999999998753
No 378
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=89.86 E-value=0.088 Score=54.80 Aligned_cols=27 Identities=30% Similarity=0.327 Sum_probs=22.5
Q ss_pred CCceeEecCCCCCChHHHHHHHHHHcC
Q 035561 487 APRGVLIVGERGTGKTSLALAIAAEAR 513 (979)
Q Consensus 487 ~P~gVLL~GPPGTGKTtLArAlA~elg 513 (979)
...-+.|.||.|+|||||++++++...
T Consensus 34 ~Ge~~~iiG~NGsGKSTLlk~l~Gl~~ 60 (214)
T 1sgw_A 34 KGNVVNFHGPNGIGKTTLLKTISTYLK 60 (214)
T ss_dssp TTCCEEEECCTTSSHHHHHHHHTTSSC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence 334578999999999999999998653
No 379
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=89.85 E-value=0.09 Score=55.42 Aligned_cols=26 Identities=35% Similarity=0.420 Sum_probs=22.2
Q ss_pred CCceeEecCCCCCChHHHHHHHHHHc
Q 035561 487 APRGVLIVGERGTGKTSLALAIAAEA 512 (979)
Q Consensus 487 ~P~gVLL~GPPGTGKTtLArAlA~el 512 (979)
...-+.|.||.|+|||||++++++..
T Consensus 31 ~Ge~~~l~G~nGsGKSTLl~~l~Gl~ 56 (240)
T 1ji0_A 31 RGQIVTLIGANGAGKTTTLSAIAGLV 56 (240)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 34457899999999999999999865
No 380
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=89.85 E-value=0.13 Score=51.36 Aligned_cols=23 Identities=26% Similarity=0.579 Sum_probs=20.9
Q ss_pred eeEecCCCCCChHHHHHHHHHHc
Q 035561 490 GVLIVGERGTGKTSLALAIAAEA 512 (979)
Q Consensus 490 gVLL~GPPGTGKTtLArAlA~el 512 (979)
-+.|.|++|+|||||++.+++..
T Consensus 31 kv~lvG~~g~GKSTLl~~l~~~~ 53 (191)
T 1oix_A 31 KVVLIGDSGVGKSNLLSRFTRNE 53 (191)
T ss_dssp EEEEEECTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHhcCC
Confidence 48899999999999999999864
No 381
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=89.84 E-value=0.09 Score=55.75 Aligned_cols=28 Identities=29% Similarity=0.332 Sum_probs=23.1
Q ss_pred CCCceeEecCCCCCChHHHHHHHHHHcC
Q 035561 486 RAPRGVLIVGERGTGKTSLALAIAAEAR 513 (979)
Q Consensus 486 ~~P~gVLL~GPPGTGKTtLArAlA~elg 513 (979)
+...-+.|.||+|+|||||++++++...
T Consensus 33 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~ 60 (247)
T 2ff7_A 33 KQGEVIGIVGRSGSGKSTLTKLIQRFYI 60 (247)
T ss_dssp ETTCEEEEECSTTSSHHHHHHHHTTSSC
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence 3445588999999999999999998653
No 382
>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*
Probab=89.80 E-value=0.69 Score=45.38 Aligned_cols=24 Identities=33% Similarity=0.513 Sum_probs=21.3
Q ss_pred CceeEecCCCCCChHHHHHHHHHH
Q 035561 488 PRGVLIVGERGTGKTSLALAIAAE 511 (979)
Q Consensus 488 P~gVLL~GPPGTGKTtLArAlA~e 511 (979)
+..|++.|++|+|||+|.+++++.
T Consensus 16 ~~ki~ivG~~~vGKSsL~~~l~~~ 39 (181)
T 1fzq_A 16 EVRILLLGLDNAGKTTLLKQLASE 39 (181)
T ss_dssp CEEEEEEESTTSSHHHHHHHHCCS
T ss_pred ceEEEEECCCCCCHHHHHHHHhcC
Confidence 456999999999999999999865
No 383
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=89.78 E-value=0.1 Score=58.60 Aligned_cols=26 Identities=31% Similarity=0.446 Sum_probs=22.2
Q ss_pred CCceeEecCCCCCChHHHHHHHHHHc
Q 035561 487 APRGVLIVGERGTGKTSLALAIAAEA 512 (979)
Q Consensus 487 ~P~gVLL~GPPGTGKTtLArAlA~el 512 (979)
...-+.|.||+|||||||.++||+-.
T Consensus 29 ~Ge~~~llGpsGsGKSTLLr~iaGl~ 54 (359)
T 3fvq_A 29 PGEILFIIGASGCGKTTLLRCLAGFE 54 (359)
T ss_dssp TTCEEEEEESTTSSHHHHHHHHHTSS
T ss_pred CCCEEEEECCCCchHHHHHHHHhcCC
Confidence 33457899999999999999999865
No 384
>2p6r_A Afuhel308 helicase; protein-DNA complex, SF2 helicase, archaeal helicase, DNA repair,, DNA binding protein/DNA complex; 3.00A {Archaeoglobus fulgidus} SCOP: a.4.5.43 a.289.1.2 c.37.1.19 c.37.1.19 PDB: 2p6u_A
Probab=89.76 E-value=0.43 Score=57.63 Aligned_cols=34 Identities=26% Similarity=0.202 Sum_probs=22.6
Q ss_pred CceeEecCCCCCChHHHHHHHH-HHc--CCCEEEeec
Q 035561 488 PRGVLIVGERGTGKTSLALAIA-AEA--RVPVVNVEA 521 (979)
Q Consensus 488 P~gVLL~GPPGTGKTtLArAlA-~el--g~~~i~Is~ 521 (979)
.+++++.||+|+|||+.+-..+ ..+ +...+.+..
T Consensus 40 ~~~~lv~apTGsGKT~~~~l~il~~~~~~~~~l~i~P 76 (702)
T 2p6r_A 40 GKNLLLAMPTAAGKTLLAEMAMVREAIKGGKSLYVVP 76 (702)
T ss_dssp CSCEEEECSSHHHHHHHHHHHHHHHHHTTCCEEEEES
T ss_pred CCcEEEEcCCccHHHHHHHHHHHHHHHhCCcEEEEeC
Confidence 4579999999999999874332 222 445555443
No 385
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=89.74 E-value=0.11 Score=55.73 Aligned_cols=27 Identities=26% Similarity=0.459 Sum_probs=22.7
Q ss_pred CCCceeEecCCCCCChHHHHHHHHHHc
Q 035561 486 RAPRGVLIVGERGTGKTSLALAIAAEA 512 (979)
Q Consensus 486 ~~P~gVLL~GPPGTGKTtLArAlA~el 512 (979)
....-+.|.||.|+|||||++++++-.
T Consensus 31 ~~Ge~~~liG~nGsGKSTLl~~i~Gl~ 57 (266)
T 2yz2_A 31 NEGECLLVAGNTGSGKSTLLQIVAGLI 57 (266)
T ss_dssp CTTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred cCCCEEEEECCCCCcHHHHHHHHhCCC
Confidence 344557899999999999999999865
No 386
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=89.73 E-value=0.11 Score=55.52 Aligned_cols=28 Identities=21% Similarity=0.275 Sum_probs=23.1
Q ss_pred CCCceeEecCCCCCChHHHHHHHHHHcC
Q 035561 486 RAPRGVLIVGERGTGKTSLALAIAAEAR 513 (979)
Q Consensus 486 ~~P~gVLL~GPPGTGKTtLArAlA~elg 513 (979)
....-+.|.||.|+|||||++++++...
T Consensus 39 ~~Gei~~l~G~NGsGKSTLlk~l~Gl~~ 66 (256)
T 1vpl_A 39 EEGEIFGLIGPNGAGKTTTLRIISTLIK 66 (256)
T ss_dssp CTTCEEEEECCTTSSHHHHHHHHTTSSC
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhcCCC
Confidence 3445588999999999999999998653
No 387
>3lxw_A GTPase IMAP family member 1; immunity, structural genomics consortium, SGC, immune system; HET: GDP; 2.21A {Homo sapiens} PDB: 3v70_A*
Probab=89.71 E-value=2.2 Score=44.60 Aligned_cols=25 Identities=28% Similarity=0.570 Sum_probs=21.7
Q ss_pred CceeEecCCCCCChHHHHHHHHHHc
Q 035561 488 PRGVLIVGERGTGKTSLALAIAAEA 512 (979)
Q Consensus 488 P~gVLL~GPPGTGKTtLArAlA~el 512 (979)
+..|+|.|.||+|||+|+.++.+..
T Consensus 21 ~l~I~lvG~~g~GKSSlin~l~~~~ 45 (247)
T 3lxw_A 21 TRRLILVGRTGAGKSATGNSILGQR 45 (247)
T ss_dssp EEEEEEESSTTSSHHHHHHHHHTSC
T ss_pred ceEEEEECCCCCcHHHHHHHHhCCC
Confidence 4569999999999999999998643
No 388
>2j9r_A Thymidine kinase; TK1, DNK, lasso, transferase, ATP-binding, deoxyribonucleoside kinase, DNA synthesis, phosphate accept nucleotide-binding; HET: THM; 2.7A {Bacillus anthracis} PDB: 2ja1_A*
Probab=89.66 E-value=0.36 Score=50.46 Aligned_cols=30 Identities=13% Similarity=0.174 Sum_probs=23.0
Q ss_pred eEecCCCCCChHHHHHHHHHHc---CCCEEEee
Q 035561 491 VLIVGERGTGKTSLALAIAAEA---RVPVVNVE 520 (979)
Q Consensus 491 VLL~GPPGTGKTtLArAlA~el---g~~~i~Is 520 (979)
.+++||.|+||||.+-.++..+ +..++.+.
T Consensus 31 ~vitG~MgsGKTT~lL~~a~r~~~~g~kVli~k 63 (214)
T 2j9r_A 31 EVICGSMFSGKSEELIRRVRRTQFAKQHAIVFK 63 (214)
T ss_dssp EEEECSTTSCHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred EEEECCCCCcHHHHHHHHHHHHHHCCCEEEEEE
Confidence 4588999999999888777654 66666654
No 389
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}
Probab=89.65 E-value=0.13 Score=57.94 Aligned_cols=26 Identities=27% Similarity=0.392 Sum_probs=22.2
Q ss_pred CCceeEecCCCCCChHHHHHHHHHHc
Q 035561 487 APRGVLIVGERGTGKTSLALAIAAEA 512 (979)
Q Consensus 487 ~P~gVLL~GPPGTGKTtLArAlA~el 512 (979)
...-+.|.||+|||||||.+++|+-.
T Consensus 28 ~Ge~~~llGpnGsGKSTLLr~iaGl~ 53 (362)
T 2it1_A 28 DGEFMALLGPSGSGKSTLLYTIAGIY 53 (362)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHTSS
T ss_pred CCCEEEEECCCCchHHHHHHHHhcCC
Confidence 33457799999999999999999865
No 390
>2fwr_A DNA repair protein RAD25; DNA unwinding, XPB, DNA binding protein; HET: DNA; 2.60A {Archaeoglobus fulgidus} SCOP: c.37.1.19 c.37.1.19 PDB: 2fzl_A*
Probab=89.65 E-value=0.68 Score=52.65 Aligned_cols=33 Identities=33% Similarity=0.353 Sum_probs=28.3
Q ss_pred eeEecCCCCCChHHHHHHHHHHcCCCEEEeech
Q 035561 490 GVLIVGERGTGKTSLALAIAAEARVPVVNVEAQ 522 (979)
Q Consensus 490 gVLL~GPPGTGKTtLArAlA~elg~~~i~Is~s 522 (979)
.++|++|+|+|||..+-.++...+.+++.+-..
T Consensus 110 ~~ll~~~TGsGKT~~~l~~i~~~~~~~Lvl~P~ 142 (472)
T 2fwr_A 110 RGCIVLPTGSGKTHVAMAAINELSTPTLIVVPT 142 (472)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHCSCEEEEESS
T ss_pred CEEEEeCCCCCHHHHHHHHHHHcCCCEEEEECC
Confidence 499999999999999988888888777777655
No 391
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=89.64 E-value=0.096 Score=56.61 Aligned_cols=27 Identities=22% Similarity=0.308 Sum_probs=22.7
Q ss_pred CCceeEecCCCCCChHHHHHHHHHHcC
Q 035561 487 APRGVLIVGERGTGKTSLALAIAAEAR 513 (979)
Q Consensus 487 ~P~gVLL~GPPGTGKTtLArAlA~elg 513 (979)
...-+.|.||+|+|||||++++++-..
T Consensus 33 ~Ge~~~iiGpnGsGKSTLl~~l~Gl~~ 59 (275)
T 3gfo_A 33 RGEVTAILGGNGVGKSTLFQNFNGILK 59 (275)
T ss_dssp TTSEEEEECCTTSSHHHHHHHHTTSSC
T ss_pred CCCEEEEECCCCCCHHHHHHHHHcCCC
Confidence 344588999999999999999998653
No 392
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}
Probab=89.62 E-value=0.13 Score=57.89 Aligned_cols=27 Identities=30% Similarity=0.374 Sum_probs=22.6
Q ss_pred CCCceeEecCCCCCChHHHHHHHHHHc
Q 035561 486 RAPRGVLIVGERGTGKTSLALAIAAEA 512 (979)
Q Consensus 486 ~~P~gVLL~GPPGTGKTtLArAlA~el 512 (979)
+...-+.|.||+|||||||.+++|+-.
T Consensus 27 ~~Ge~~~llGpnGsGKSTLLr~iaGl~ 53 (359)
T 2yyz_A 27 KDGEFVALLGPSGCGKTTTLLMLAGIY 53 (359)
T ss_dssp CTTCEEEEECSTTSSHHHHHHHHHTSS
T ss_pred cCCCEEEEEcCCCchHHHHHHHHHCCC
Confidence 334457899999999999999999865
No 393
>3fht_A ATP-dependent RNA helicase DDX19B; DBP5, DEAD-box helicase, RNA dependent ATPase, mRNA export, nucleocytoplasmic transport, NUP214, CAN; HET: ANP; 2.20A {Homo sapiens} PDB: 3ews_A* 3g0h_A* 3fhc_B
Probab=89.61 E-value=1.3 Score=48.73 Aligned_cols=53 Identities=21% Similarity=0.335 Sum_probs=33.9
Q ss_pred CCCCCcccCcHHHHHHHHHHHHhhcChhHHHhcC-----CCCCceeEecCCCCCChHHHH
Q 035561 451 PIPLKDFASVESMREEINEVVAFLQNPSAFQEMG-----ARAPRGVLIVGERGTGKTSLA 505 (979)
Q Consensus 451 ~~~f~DIvGleevke~L~eiV~~L~~p~~f~~lG-----~~~P~gVLL~GPPGTGKTtLA 505 (979)
..+|+++.-.+.+.+.|.+. -+..|..++... ...++.+++.+|+|+|||+.+
T Consensus 24 ~~~f~~~~l~~~l~~~l~~~--g~~~~~~~Q~~~i~~~~~~~~~~~lv~apTGsGKT~~~ 81 (412)
T 3fht_A 24 VKSFEELRLKPQLLQGVYAM--GFNRPSKIQENALPLMLAEPPQNLIAQSQSGTGKTAAF 81 (412)
T ss_dssp SSCTGGGTCCHHHHHHHHHT--TCCSCCHHHHHHHHHHHSSSCCCEEEECCTTSCHHHHH
T ss_pred cCCHhhCCCCHHHHHHHHHc--CCCCCCHHHHHHHHHHhcCCCCeEEEECCCCchHHHHH
Confidence 45788887777777777642 123333322211 123578999999999999875
No 394
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=89.54 E-value=0.13 Score=58.26 Aligned_cols=27 Identities=33% Similarity=0.404 Sum_probs=22.6
Q ss_pred CCCceeEecCCCCCChHHHHHHHHHHc
Q 035561 486 RAPRGVLIVGERGTGKTSLALAIAAEA 512 (979)
Q Consensus 486 ~~P~gVLL~GPPGTGKTtLArAlA~el 512 (979)
+...-+.|.||+|||||||.++||+-.
T Consensus 27 ~~Ge~~~llGpsGsGKSTLLr~iaGl~ 53 (381)
T 3rlf_A 27 HEGEFVVFVGPSGCGKSTLLRMIAGLE 53 (381)
T ss_dssp CTTCEEEEECCTTSSHHHHHHHHHTSS
T ss_pred CCCCEEEEEcCCCchHHHHHHHHHcCC
Confidence 334457899999999999999999865
No 395
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*
Probab=89.49 E-value=0.13 Score=58.00 Aligned_cols=27 Identities=26% Similarity=0.356 Sum_probs=22.6
Q ss_pred CCCceeEecCCCCCChHHHHHHHHHHc
Q 035561 486 RAPRGVLIVGERGTGKTSLALAIAAEA 512 (979)
Q Consensus 486 ~~P~gVLL~GPPGTGKTtLArAlA~el 512 (979)
+...-+.|.||+|||||||.+++|+-.
T Consensus 35 ~~Ge~~~llGpnGsGKSTLLr~iaGl~ 61 (372)
T 1v43_A 35 KDGEFLVLLGPSGCGKTTTLRMIAGLE 61 (372)
T ss_dssp CTTCEEEEECCTTSSHHHHHHHHHTSS
T ss_pred CCCCEEEEECCCCChHHHHHHHHHcCC
Confidence 334457899999999999999999865
No 396
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=89.46 E-value=0.1 Score=55.54 Aligned_cols=28 Identities=32% Similarity=0.462 Sum_probs=23.1
Q ss_pred CCCceeEecCCCCCChHHHHHHHHHHcC
Q 035561 486 RAPRGVLIVGERGTGKTSLALAIAAEAR 513 (979)
Q Consensus 486 ~~P~gVLL~GPPGTGKTtLArAlA~elg 513 (979)
....-+.|.||.|+|||||++++++...
T Consensus 24 ~~Ge~~~liG~NGsGKSTLlk~l~Gl~~ 51 (249)
T 2qi9_C 24 RAGEILHLVGPNGAGKSTLLARMAGMTS 51 (249)
T ss_dssp ETTCEEEEECCTTSSHHHHHHHHTTSSC
T ss_pred cCCCEEEEECCCCCcHHHHHHHHhCCCC
Confidence 3344588999999999999999998653
No 397
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=89.46 E-value=0.14 Score=55.08 Aligned_cols=23 Identities=26% Similarity=0.592 Sum_probs=21.2
Q ss_pred eeEecCCCCCChHHHHHHHHHHc
Q 035561 490 GVLIVGERGTGKTSLALAIAAEA 512 (979)
Q Consensus 490 gVLL~GPPGTGKTtLArAlA~el 512 (979)
.+.|.||+|+|||||.+++++..
T Consensus 4 ~v~lvG~nGaGKSTLln~L~g~~ 26 (270)
T 3sop_A 4 NIMVVGQSGLGKSTLVNTLFKSQ 26 (270)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 47899999999999999999876
No 398
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1
Probab=89.46 E-value=0.14 Score=57.02 Aligned_cols=28 Identities=29% Similarity=0.392 Sum_probs=24.0
Q ss_pred CceeEecCCCCCChHHHHHHHHHHcCCC
Q 035561 488 PRGVLIVGERGTGKTSLALAIAAEARVP 515 (979)
Q Consensus 488 P~gVLL~GPPGTGKTtLArAlA~elg~~ 515 (979)
..-+.|.||+|||||||++.+++.....
T Consensus 170 g~k~~IvG~nGsGKSTLlk~L~gl~~~~ 197 (365)
T 1lw7_A 170 AKTVAILGGESSGKSVLVNKLAAVFNTT 197 (365)
T ss_dssp CEEEEEECCTTSHHHHHHHHHHHHTTCE
T ss_pred hCeEEEECCCCCCHHHHHHHHHHHhCCC
Confidence 3458899999999999999999987543
No 399
>3fmp_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 3.19A {Homo sapiens}
Probab=89.30 E-value=1.2 Score=50.64 Aligned_cols=52 Identities=21% Similarity=0.322 Sum_probs=32.6
Q ss_pred CCCCcccCcHHHHHHHHHHHHhhcChhHHHhc-----CCCCCceeEecCCCCCChHHHH
Q 035561 452 IPLKDFASVESMREEINEVVAFLQNPSAFQEM-----GARAPRGVLIVGERGTGKTSLA 505 (979)
Q Consensus 452 ~~f~DIvGleevke~L~eiV~~L~~p~~f~~l-----G~~~P~gVLL~GPPGTGKTtLA 505 (979)
.+|+++.-.+.+.+.|... -+..|..++.. -...++.+|+.||+|+|||..+
T Consensus 92 ~~f~~~~l~~~l~~~l~~~--g~~~p~~~Q~~ai~~il~~~~~~~l~~a~TGsGKT~~~ 148 (479)
T 3fmp_B 92 KSFEELRLKPQLLQGVYAM--GFNRPSKIQENALPLMLAEPPQNLIAQSQSGTGKTAAF 148 (479)
T ss_dssp CCSGGGTCCHHHHHHHHHT--TCCSCCHHHHHHHHHHTSBSCCEEEEECCSSSSHHHHH
T ss_pred CCHHHcCCCHHHHHHHHHc--CCCCCCHHHHHHHHHHHcCCCCcEEEEcCCCCchhHHH
Confidence 4688887777776666531 13333322221 1123578999999999999874
No 400
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=89.26 E-value=0.18 Score=47.56 Aligned_cols=24 Identities=25% Similarity=0.552 Sum_probs=21.0
Q ss_pred ceeEecCCCCCChHHHHHHHHHHc
Q 035561 489 RGVLIVGERGTGKTSLALAIAAEA 512 (979)
Q Consensus 489 ~gVLL~GPPGTGKTtLArAlA~el 512 (979)
..|++.|++|+|||+|+.++....
T Consensus 4 ~~i~v~G~~~~GKSsli~~l~~~~ 27 (167)
T 1kao_A 4 YKVVVLGSGGVGKSALTVQFVTGT 27 (167)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEEEECCCCCCHHHHHHHHHcCC
Confidence 359999999999999999998753
No 401
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=89.24 E-value=0.17 Score=47.80 Aligned_cols=24 Identities=33% Similarity=0.634 Sum_probs=21.2
Q ss_pred ceeEecCCCCCChHHHHHHHHHHc
Q 035561 489 RGVLIVGERGTGKTSLALAIAAEA 512 (979)
Q Consensus 489 ~gVLL~GPPGTGKTtLArAlA~el 512 (979)
..|++.|++|+|||+|+.++....
T Consensus 5 ~~i~v~G~~~~GKssl~~~l~~~~ 28 (168)
T 1u8z_A 5 HKVIMVGSGGVGKSALTLQFMYDE 28 (168)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEEECCCCCCHHHHHHHHHhCc
Confidence 469999999999999999998753
No 402
>2orv_A Thymidine kinase; TP4A (P1-(5'-adenosyl)P4-(5'- (2'deoxythymidil))tetraphosphate, transferase; HET: 4TA; 2.30A {Homo sapiens} SCOP: c.37.1.24 g.39.1.14
Probab=89.23 E-value=1.1 Score=47.61 Aligned_cols=69 Identities=16% Similarity=0.163 Sum_probs=36.2
Q ss_pred ceeEecCCCCCChHHHHHHHHHHc---CCCEEEeechh------hhhhhhcccc-----hhhHHHHHHHHHhcCCeEEEE
Q 035561 489 RGVLIVGERGTGKTSLALAIAAEA---RVPVVNVEAQE------LEAGLWVGQS-----ASNVRELFQTARDLAPVIIFV 554 (979)
Q Consensus 489 ~gVLL~GPPGTGKTtLArAlA~el---g~~~i~Is~sd------L~~~~~vG~~-----~~~Ir~lF~~A~~~aP~ILfI 554 (979)
.=.++|||.|+||||.+-..+..+ |..++.+.... -+.+. .|.. .....++++.+ ....+|+|
T Consensus 20 ~l~v~~G~MgsGKTT~lL~~~~r~~~~g~kvli~kp~~D~Ryg~~i~sr-~G~~~~a~~i~~~~di~~~~--~~~dvViI 96 (234)
T 2orv_A 20 QIQVILGPMFSGKSTELMRRVRRFQIAQYKCLVIKYAKDTRYSSSFCTH-DRNTMEALPACLLRDVAQEA--LGVAVIGI 96 (234)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHHHTTTCCEEEEEETTCCCC------------CEEEEESSGGGGHHHH--TTCSEEEE
T ss_pred EEEEEECCCCCcHHHHHHHHHHHHHHCCCeEEEEeecCCccchHHHHhh-cCCeeEEEecCCHHHHHHHh--ccCCEEEE
Confidence 335678999999997665555433 55555554221 00011 0110 01112344444 23579999
Q ss_pred cCcccc
Q 035561 555 EDFDLF 560 (979)
Q Consensus 555 DEIDaL 560 (979)
||+.-+
T Consensus 97 DEaQF~ 102 (234)
T 2orv_A 97 DEGQFF 102 (234)
T ss_dssp SSGGGC
T ss_pred Echhhh
Confidence 999755
No 403
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=89.22 E-value=0.1 Score=55.96 Aligned_cols=27 Identities=26% Similarity=0.383 Sum_probs=22.8
Q ss_pred CCCceeEecCCCCCChHHHHHHHHHHc
Q 035561 486 RAPRGVLIVGERGTGKTSLALAIAAEA 512 (979)
Q Consensus 486 ~~P~gVLL~GPPGTGKTtLArAlA~el 512 (979)
+...-+.|.||+|+|||||++++++-.
T Consensus 35 ~~Ge~~~liG~nGsGKSTLl~~l~Gl~ 61 (266)
T 4g1u_C 35 ASGEMVAIIGPNGAGKSTLLRLLTGYL 61 (266)
T ss_dssp ETTCEEEEECCTTSCHHHHHHHHTSSS
T ss_pred cCCCEEEEECCCCCcHHHHHHHHhcCC
Confidence 334557899999999999999999865
No 404
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=89.21 E-value=0.12 Score=57.94 Aligned_cols=26 Identities=31% Similarity=0.373 Sum_probs=22.1
Q ss_pred CCceeEecCCCCCChHHHHHHHHHHc
Q 035561 487 APRGVLIVGERGTGKTSLALAIAAEA 512 (979)
Q Consensus 487 ~P~gVLL~GPPGTGKTtLArAlA~el 512 (979)
...-+.|.||+|||||||.+++|+-.
T Consensus 40 ~Ge~~~llGpnGsGKSTLLr~iaGl~ 65 (355)
T 1z47_A 40 EGEMVGLLGPSGSGKTTILRLIAGLE 65 (355)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHHTSS
T ss_pred CCCEEEEECCCCCcHHHHHHHHhCCC
Confidence 33457899999999999999999865
No 405
>4a2p_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.00A {Anas platyrhynchos} PDB: 4a36_A*
Probab=89.17 E-value=1.1 Score=51.42 Aligned_cols=33 Identities=27% Similarity=0.461 Sum_probs=23.9
Q ss_pred ceeEecCCCCCChHHHHHHHHHHc--------CCCEEEeec
Q 035561 489 RGVLIVGERGTGKTSLALAIAAEA--------RVPVVNVEA 521 (979)
Q Consensus 489 ~gVLL~GPPGTGKTtLArAlA~el--------g~~~i~Is~ 521 (979)
+++++.+|+|+|||..+-..+... +..++.+..
T Consensus 23 ~~~l~~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~~lil~P 63 (556)
T 4a2p_A 23 KNALICAPTGSGKTFVSILICEHHFQNMPAGRKAKVVFLAT 63 (556)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHHHHHTCCSSCCCCEEEECS
T ss_pred CCEEEEcCCCChHHHHHHHHHHHHHHhCcccCCCeEEEEeC
Confidence 469999999999999876665443 455555544
No 406
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=89.16 E-value=0.11 Score=56.21 Aligned_cols=28 Identities=25% Similarity=0.279 Sum_probs=23.0
Q ss_pred CCCceeEecCCCCCChHHHHHHHHHHcC
Q 035561 486 RAPRGVLIVGERGTGKTSLALAIAAEAR 513 (979)
Q Consensus 486 ~~P~gVLL~GPPGTGKTtLArAlA~elg 513 (979)
+...-+.|.||.|+|||||++++++...
T Consensus 45 ~~Ge~~~liG~NGsGKSTLlk~l~Gl~~ 72 (279)
T 2ihy_A 45 AKGDKWILYGLNGAGKTTLLNILNAYEP 72 (279)
T ss_dssp ETTCEEEEECCTTSSHHHHHHHHTTSSC
T ss_pred cCCCEEEEECCCCCcHHHHHHHHhCCCC
Confidence 3344588999999999999999998653
No 407
>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2
Probab=89.12 E-value=0.7 Score=46.29 Aligned_cols=24 Identities=38% Similarity=0.480 Sum_probs=21.3
Q ss_pred ceeEecCCCCCChHHHHHHHHHHc
Q 035561 489 RGVLIVGERGTGKTSLALAIAAEA 512 (979)
Q Consensus 489 ~gVLL~GPPGTGKTtLArAlA~el 512 (979)
..|++.|++|+|||+|+.++....
T Consensus 8 ~ki~vvG~~~~GKTsli~~l~~~~ 31 (214)
T 2fh5_B 8 RAVLFVGLCDSGKTLLFVRLLTGQ 31 (214)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHSC
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC
Confidence 469999999999999999998753
No 408
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=89.11 E-value=0.11 Score=55.33 Aligned_cols=27 Identities=19% Similarity=0.282 Sum_probs=22.6
Q ss_pred CCCceeEecCCCCCChHHHHHHHHHHc
Q 035561 486 RAPRGVLIVGERGTGKTSLALAIAAEA 512 (979)
Q Consensus 486 ~~P~gVLL~GPPGTGKTtLArAlA~el 512 (979)
+...-+.|.||+|+|||||++++++..
T Consensus 29 ~~Ge~~~l~G~nGsGKSTLl~~l~Gl~ 55 (253)
T 2nq2_C 29 NKGDILAVLGQNGCGKSTLLDLLLGIH 55 (253)
T ss_dssp ETTCEEEEECCSSSSHHHHHHHHTTSS
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 334458899999999999999999865
No 409
>3tmk_A Thymidylate kinase; phosphotransferase; HET: T5A; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 2tmk_A* 1tmk_A*
Probab=89.10 E-value=0.29 Score=51.03 Aligned_cols=29 Identities=24% Similarity=0.218 Sum_probs=25.1
Q ss_pred CceeEecCCCCCChHHHHHHHHHHcCCCE
Q 035561 488 PRGVLIVGERGTGKTSLALAIAAEARVPV 516 (979)
Q Consensus 488 P~gVLL~GPPGTGKTtLArAlA~elg~~~ 516 (979)
+.-|.+.|++|+||||+++.+++.++.+.
T Consensus 5 g~~i~~eG~~g~GKst~~~~l~~~l~~~~ 33 (216)
T 3tmk_A 5 GKLILIEGLDRTGKTTQCNILYKKLQPNC 33 (216)
T ss_dssp CCEEEEEECSSSSHHHHHHHHHHHHCSSE
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhcccc
Confidence 34588899999999999999999998643
No 410
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=88.86 E-value=0.21 Score=47.42 Aligned_cols=24 Identities=25% Similarity=0.520 Sum_probs=21.0
Q ss_pred ceeEecCCCCCChHHHHHHHHHHc
Q 035561 489 RGVLIVGERGTGKTSLALAIAAEA 512 (979)
Q Consensus 489 ~gVLL~GPPGTGKTtLArAlA~el 512 (979)
..|++.|++|+|||+|+.++.+..
T Consensus 4 ~~i~v~G~~~~GKssli~~l~~~~ 27 (170)
T 1ek0_A 4 IKLVLLGEAAVGKSSIVLRFVSND 27 (170)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEEECCCCCCHHHHHHHHhcCC
Confidence 358999999999999999998754
No 411
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=88.82 E-value=0.17 Score=47.60 Aligned_cols=23 Identities=26% Similarity=0.619 Sum_probs=20.7
Q ss_pred eeEecCCCCCChHHHHHHHHHHc
Q 035561 490 GVLIVGERGTGKTSLALAIAAEA 512 (979)
Q Consensus 490 gVLL~GPPGTGKTtLArAlA~el 512 (979)
.|++.|++|+|||+|+.++++..
T Consensus 5 ~i~v~G~~~~GKssl~~~l~~~~ 27 (166)
T 2ce2_X 5 KLVVVGAGGVGKSALTIQLIQNH 27 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHHhCc
Confidence 58999999999999999998753
No 412
>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*
Probab=88.82 E-value=0.24 Score=47.26 Aligned_cols=24 Identities=29% Similarity=0.516 Sum_probs=21.3
Q ss_pred CceeEecCCCCCChHHHHHHHHHH
Q 035561 488 PRGVLIVGERGTGKTSLALAIAAE 511 (979)
Q Consensus 488 P~gVLL~GPPGTGKTtLArAlA~e 511 (979)
+..|++.|++|+|||+|+.++...
T Consensus 7 ~~~i~v~G~~~~GKssl~~~l~~~ 30 (171)
T 1upt_A 7 EMRILILGLDGAGKTTILYRLQVG 30 (171)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHS
T ss_pred ccEEEEECCCCCCHHHHHHHHhcC
Confidence 456999999999999999999764
No 413
>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A
Probab=88.81 E-value=0.13 Score=57.90 Aligned_cols=26 Identities=27% Similarity=0.345 Sum_probs=22.2
Q ss_pred CCceeEecCCCCCChHHHHHHHHHHc
Q 035561 487 APRGVLIVGERGTGKTSLALAIAAEA 512 (979)
Q Consensus 487 ~P~gVLL~GPPGTGKTtLArAlA~el 512 (979)
...-+.|.||+|||||||.++||+-.
T Consensus 28 ~Ge~~~llGpnGsGKSTLLr~iaGl~ 53 (372)
T 1g29_1 28 DGEFMILLGPSGCGKTTTLRMIAGLE 53 (372)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHHTSS
T ss_pred CCCEEEEECCCCcHHHHHHHHHHcCC
Confidence 33457899999999999999999865
No 414
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=88.77 E-value=0.21 Score=47.56 Aligned_cols=24 Identities=25% Similarity=0.530 Sum_probs=21.3
Q ss_pred ceeEecCCCCCChHHHHHHHHHHc
Q 035561 489 RGVLIVGERGTGKTSLALAIAAEA 512 (979)
Q Consensus 489 ~gVLL~GPPGTGKTtLArAlA~el 512 (979)
..|++.|++|+|||+|++++.+..
T Consensus 7 ~~i~v~G~~~~GKSsli~~l~~~~ 30 (170)
T 1z0j_A 7 LKVCLLGDTGVGKSSIMWRFVEDS 30 (170)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHSC
T ss_pred eEEEEECcCCCCHHHHHHHHHcCC
Confidence 359999999999999999998764
No 415
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Probab=88.71 E-value=0.2 Score=48.27 Aligned_cols=25 Identities=36% Similarity=0.514 Sum_probs=21.6
Q ss_pred CceeEecCCCCCChHHHHHHHHHHc
Q 035561 488 PRGVLIVGERGTGKTSLALAIAAEA 512 (979)
Q Consensus 488 P~gVLL~GPPGTGKTtLArAlA~el 512 (979)
+..|++.|++|+|||+|+.++.+..
T Consensus 8 ~~~i~v~G~~~~GKSsli~~l~~~~ 32 (182)
T 1ky3_A 8 ILKVIILGDSGVGKTSLMHRYVNDK 32 (182)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHHSC
T ss_pred eEEEEEECCCCCCHHHHHHHHHhCc
Confidence 3469999999999999999998753
No 416
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=88.69 E-value=0.22 Score=47.96 Aligned_cols=25 Identities=40% Similarity=0.442 Sum_probs=21.5
Q ss_pred CCceeEecCCCCCChHHHHHHHHHH
Q 035561 487 APRGVLIVGERGTGKTSLALAIAAE 511 (979)
Q Consensus 487 ~P~gVLL~GPPGTGKTtLArAlA~e 511 (979)
.+..|++.|++|+|||+|+.++.+.
T Consensus 7 ~~~~i~v~G~~~~GKssl~~~l~~~ 31 (178)
T 2lkc_A 7 RPPVVTIMGHVDHGKTTLLDAIRHS 31 (178)
T ss_dssp CCCEEEEESCTTTTHHHHHHHHHTT
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 3456999999999999999999763
No 417
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12
Probab=88.68 E-value=0.11 Score=58.04 Aligned_cols=27 Identities=30% Similarity=0.326 Sum_probs=22.6
Q ss_pred CCCceeEecCCCCCChHHHHHHHHHHc
Q 035561 486 RAPRGVLIVGERGTGKTSLALAIAAEA 512 (979)
Q Consensus 486 ~~P~gVLL~GPPGTGKTtLArAlA~el 512 (979)
+...-+.|.||+|||||||.+++|+-.
T Consensus 24 ~~Ge~~~llGpnGsGKSTLLr~iaGl~ 50 (348)
T 3d31_A 24 ESGEYFVILGPTGAGKTLFLELIAGFH 50 (348)
T ss_dssp CTTCEEEEECCCTHHHHHHHHHHHTSS
T ss_pred cCCCEEEEECCCCccHHHHHHHHHcCC
Confidence 334457899999999999999999865
No 418
>1oyw_A RECQ helicase, ATP-dependent DNA helicase; winged helix, helix-turn-helix, ATP binding, Zn(2+) binding, hydrolase; 1.80A {Escherichia coli} SCOP: a.4.5.43 c.37.1.19 c.37.1.19 PDB: 1oyy_A*
Probab=88.68 E-value=0.63 Score=54.44 Aligned_cols=32 Identities=28% Similarity=0.146 Sum_probs=21.0
Q ss_pred ceeEecCCCCCChHHHHHHHHHHcCCCEEEee
Q 035561 489 RGVLIVGERGTGKTSLALAIAAEARVPVVNVE 520 (979)
Q Consensus 489 ~gVLL~GPPGTGKTtLArAlA~elg~~~i~Is 520 (979)
+.+|+.+|+|+|||+.+..-+-..+-..+.+.
T Consensus 41 ~d~lv~apTGsGKTl~~~lp~l~~~g~~lvi~ 72 (523)
T 1oyw_A 41 RDCLVVMPTGGGKSLCYQIPALLLNGLTVVVS 72 (523)
T ss_dssp CCEEEECSCHHHHHHHHHHHHHHSSSEEEEEC
T ss_pred CCEEEECCCCcHHHHHHHHHHHHhCCCEEEEC
Confidence 46999999999999866544443333333333
No 419
>2v6i_A RNA helicase; membrane, hydrolase, transmembrane, RNA replication, viral replication, nucleotide-binding; 2.10A {Kokobera virus} PDB: 2v6j_A
Probab=88.64 E-value=0.91 Score=51.65 Aligned_cols=33 Identities=18% Similarity=0.193 Sum_probs=21.8
Q ss_pred ceeEecCCCCCChHHHH-HHHHH---HcCCCEEEeec
Q 035561 489 RGVLIVGERGTGKTSLA-LAIAA---EARVPVVNVEA 521 (979)
Q Consensus 489 ~gVLL~GPPGTGKTtLA-rAlA~---elg~~~i~Is~ 521 (979)
+.+|+.||+|+|||+.+ -++.. ..+...+.+..
T Consensus 3 ~~~lv~a~TGsGKT~~~l~~~l~~~~~~g~~~lvl~P 39 (431)
T 2v6i_A 3 ELTVLDLHPGAGKTRRVLPQLVREAVKKRLRTVILAP 39 (431)
T ss_dssp CEEEEECCTTSCTTTTHHHHHHHHHHHTTCCEEEEES
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHHHHhCCCCEEEECc
Confidence 57999999999999975 43432 23444444443
No 420
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Probab=88.61 E-value=0.22 Score=47.50 Aligned_cols=24 Identities=38% Similarity=0.487 Sum_probs=21.2
Q ss_pred ceeEecCCCCCChHHHHHHHHHHc
Q 035561 489 RGVLIVGERGTGKTSLALAIAAEA 512 (979)
Q Consensus 489 ~gVLL~GPPGTGKTtLArAlA~el 512 (979)
..|++.|++|+|||+|+.++.+..
T Consensus 7 ~~i~v~G~~~~GKssli~~l~~~~ 30 (170)
T 1z08_A 7 FKVVLLGEGCVGKTSLVLRYCENK 30 (170)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHCC
T ss_pred eEEEEECcCCCCHHHHHHHHHcCC
Confidence 459999999999999999998753
No 421
>2gk6_A Regulator of nonsense transcripts 1; UPF1, helicase, NMD, hydrolase; HET: ADP; 2.40A {Homo sapiens} PDB: 2gjk_A* 2gk7_A 2xzo_A* 2xzp_A
Probab=88.56 E-value=0.19 Score=60.18 Aligned_cols=32 Identities=34% Similarity=0.365 Sum_probs=23.1
Q ss_pred eeEecCCCCCChHHHHHHHHHHc----CCCEEEeec
Q 035561 490 GVLIVGERGTGKTSLALAIAAEA----RVPVVNVEA 521 (979)
Q Consensus 490 gVLL~GPPGTGKTtLArAlA~el----g~~~i~Is~ 521 (979)
..++.||||||||+++..++..+ +.+++.+..
T Consensus 197 ~~li~GppGTGKT~~~~~~i~~l~~~~~~~ilv~a~ 232 (624)
T 2gk6_A 197 LSLIQGPPGTGKTVTSATIVYHLARQGNGPVLVCAP 232 (624)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHHTSSSCCEEEEES
T ss_pred CeEEECCCCCCHHHHHHHHHHHHHHcCCCeEEEEeC
Confidence 47899999999999887776654 344444443
No 422
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*
Probab=88.53 E-value=0.23 Score=47.82 Aligned_cols=24 Identities=29% Similarity=0.488 Sum_probs=21.1
Q ss_pred ceeEecCCCCCChHHHHHHHHHHc
Q 035561 489 RGVLIVGERGTGKTSLALAIAAEA 512 (979)
Q Consensus 489 ~gVLL~GPPGTGKTtLArAlA~el 512 (979)
..|++.|++|+|||+|+.++....
T Consensus 8 ~~i~v~G~~~~GKSsli~~l~~~~ 31 (177)
T 1wms_A 8 FKVILLGDGGVGKSSLMNRYVTNK 31 (177)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHSC
T ss_pred eEEEEECCCCCCHHHHHHHHHcCC
Confidence 459999999999999999998643
No 423
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=88.51 E-value=0.17 Score=49.86 Aligned_cols=21 Identities=38% Similarity=0.680 Sum_probs=19.5
Q ss_pred eeEecCCCCCChHHHHHHHHH
Q 035561 490 GVLIVGERGTGKTSLALAIAA 510 (979)
Q Consensus 490 gVLL~GPPGTGKTtLArAlA~ 510 (979)
-|+|.|++|+|||+|++.+++
T Consensus 4 kv~ivG~~gvGKStLl~~l~~ 24 (184)
T 2zej_A 4 KLMIVGNTGSGKTTLLQQLMK 24 (184)
T ss_dssp EEEEESCTTSSHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHhc
Confidence 489999999999999999986
No 424
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=88.45 E-value=0.21 Score=47.86 Aligned_cols=23 Identities=43% Similarity=0.648 Sum_probs=20.4
Q ss_pred ceeEecCCCCCChHHHHHHHHHH
Q 035561 489 RGVLIVGERGTGKTSLALAIAAE 511 (979)
Q Consensus 489 ~gVLL~GPPGTGKTtLArAlA~e 511 (979)
..|++.|++|+|||+|++++.+.
T Consensus 5 ~ki~i~G~~~vGKSsl~~~l~~~ 27 (175)
T 2nzj_A 5 YRVVLLGDPGVGKTSLASLFAGK 27 (175)
T ss_dssp EEEEEECCTTSSHHHHHHHHHCC
T ss_pred EEEEEECCCCccHHHHHHHHhcC
Confidence 45999999999999999999754
No 425
>2db3_A ATP-dependent RNA helicase VASA; DEAD-BOX, protein-RNA complex, ATPase, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.20A {Drosophila melanogaster}
Probab=88.42 E-value=2.3 Score=48.16 Aligned_cols=54 Identities=17% Similarity=0.292 Sum_probs=33.5
Q ss_pred CCCCCCCcccCcHHHHHHHHHHHHhhcChhHHHhcCC---CCCceeEecCCCCCChHHH
Q 035561 449 NPPIPLKDFASVESMREEINEVVAFLQNPSAFQEMGA---RAPRGVLIVGERGTGKTSL 504 (979)
Q Consensus 449 ~~~~~f~DIvGleevke~L~eiV~~L~~p~~f~~lG~---~~P~gVLL~GPPGTGKTtL 504 (979)
.+-.+|+++.-.+.+.+.|... -+..|..++...+ ...+.+++.+|+|+|||+.
T Consensus 53 ~~~~~f~~~~l~~~l~~~l~~~--g~~~pt~iQ~~ai~~i~~g~d~i~~a~TGsGKT~a 109 (434)
T 2db3_A 53 QPIQHFTSADLRDIIIDNVNKS--GYKIPTPIQKCSIPVISSGRDLMACAQTGSGKTAA 109 (434)
T ss_dssp CCCCCGGGSCCCHHHHHHHHHT--TCCSCCHHHHHHHHHHHTTCCEEEECCTTSSHHHH
T ss_pred CCcCChhhcCCCHHHHHHHHHc--CCCCCCHHHHHHHHHHhcCCCEEEECCCCCCchHH
Confidence 3456798887666666666431 1333433333221 1246799999999999984
No 426
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=88.40 E-value=0.21 Score=48.30 Aligned_cols=22 Identities=23% Similarity=0.519 Sum_probs=19.9
Q ss_pred eeEecCCCCCChHHHHHHHHHH
Q 035561 490 GVLIVGERGTGKTSLALAIAAE 511 (979)
Q Consensus 490 gVLL~GPPGTGKTtLArAlA~e 511 (979)
-+.|.|++|+|||+|.+++++.
T Consensus 5 ~v~lvG~~gvGKStL~~~l~~~ 26 (165)
T 2wji_A 5 EIALIGNPNVGKSTIFNALTGE 26 (165)
T ss_dssp EEEEECSTTSSHHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 4899999999999999999863
No 427
>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=88.39 E-value=0.57 Score=47.28 Aligned_cols=23 Identities=26% Similarity=0.498 Sum_probs=20.7
Q ss_pred ceeEecCCCCCChHHHHHHHHHH
Q 035561 489 RGVLIVGERGTGKTSLALAIAAE 511 (979)
Q Consensus 489 ~gVLL~GPPGTGKTtLArAlA~e 511 (979)
..|++.|++|+|||+|++++...
T Consensus 27 ~ki~lvG~~~vGKSsLi~~l~~~ 49 (201)
T 2ew1_A 27 FKIVLIGNAGVGKTCLVRRFTQG 49 (201)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHS
T ss_pred eEEEEECcCCCCHHHHHHHHHhC
Confidence 46999999999999999999874
No 428
>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A*
Probab=88.39 E-value=0.25 Score=50.24 Aligned_cols=23 Identities=26% Similarity=0.484 Sum_probs=20.8
Q ss_pred ceeEecCCCCCChHHHHHHHHHH
Q 035561 489 RGVLIVGERGTGKTSLALAIAAE 511 (979)
Q Consensus 489 ~gVLL~GPPGTGKTtLArAlA~e 511 (979)
..|++.|++|+|||+|+..+...
T Consensus 28 ~ki~vvG~~~vGKSsL~~~l~~~ 50 (214)
T 3q3j_B 28 CKLVLVGDVQCGKTAMLQVLAKD 50 (214)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEEECcCCCCHHHHHHHHhcC
Confidence 45999999999999999999875
No 429
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=88.26 E-value=0.3 Score=49.40 Aligned_cols=25 Identities=32% Similarity=0.321 Sum_probs=22.3
Q ss_pred ceeEecCCCCCChHHHHHHHHHHcC
Q 035561 489 RGVLIVGERGTGKTSLALAIAAEAR 513 (979)
Q Consensus 489 ~gVLL~GPPGTGKTtLArAlA~elg 513 (979)
..+++.|++|+||||++..++..+.
T Consensus 31 ~~i~i~G~~g~GKTTl~~~l~~~~~ 55 (221)
T 2wsm_A 31 VAVNIMGAIGSGKTLLIERTIERIG 55 (221)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHHHT
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHhc
Confidence 4689999999999999999998864
No 430
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*
Probab=88.19 E-value=0.23 Score=47.07 Aligned_cols=23 Identities=30% Similarity=0.512 Sum_probs=20.6
Q ss_pred ceeEecCCCCCChHHHHHHHHHH
Q 035561 489 RGVLIVGERGTGKTSLALAIAAE 511 (979)
Q Consensus 489 ~gVLL~GPPGTGKTtLArAlA~e 511 (979)
..|++.|++|+|||+|+.++...
T Consensus 7 ~~i~v~G~~~~GKssli~~l~~~ 29 (170)
T 1r2q_A 7 FKLVLLGESAVGKSSLVLRFVKG 29 (170)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHHcC
Confidence 45899999999999999999874
No 431
>3dkp_A Probable ATP-dependent RNA helicase DDX52; DEAD, ADP, structural genomics, structural GEN consortium, SGC, rRNA, ATP-binding, hydrolase; HET: ADP; 2.10A {Homo sapiens}
Probab=88.15 E-value=1.3 Score=45.48 Aligned_cols=17 Identities=35% Similarity=0.442 Sum_probs=15.0
Q ss_pred ceeEecCCCCCChHHHH
Q 035561 489 RGVLIVGERGTGKTSLA 505 (979)
Q Consensus 489 ~gVLL~GPPGTGKTtLA 505 (979)
+++++.+|+|+|||..+
T Consensus 67 ~~~l~~a~TGsGKT~~~ 83 (245)
T 3dkp_A 67 RELLASAPTGSGKTLAF 83 (245)
T ss_dssp CCEEEECCTTSCHHHHH
T ss_pred CCEEEECCCCCcHHHHH
Confidence 56999999999999864
No 432
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Probab=88.14 E-value=0.2 Score=47.60 Aligned_cols=23 Identities=35% Similarity=0.518 Sum_probs=20.4
Q ss_pred ceeEecCCCCCChHHHHHHHHHH
Q 035561 489 RGVLIVGERGTGKTSLALAIAAE 511 (979)
Q Consensus 489 ~gVLL~GPPGTGKTtLArAlA~e 511 (979)
..|++.|++|+|||+|+.++.+.
T Consensus 4 ~~i~v~G~~~~GKssli~~l~~~ 26 (172)
T 2erx_A 4 YRVAVFGAGGVGKSSLVLRFVKG 26 (172)
T ss_dssp EEEEEECCTTSSHHHHHHHHHTC
T ss_pred eEEEEECCCCCCHHHHHHHHHcC
Confidence 35899999999999999999863
No 433
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=88.11 E-value=0.16 Score=54.51 Aligned_cols=25 Identities=40% Similarity=0.569 Sum_probs=22.1
Q ss_pred CceeEecCCCCCChHHHHHHHHHHc
Q 035561 488 PRGVLIVGERGTGKTSLALAIAAEA 512 (979)
Q Consensus 488 P~gVLL~GPPGTGKTtLArAlA~el 512 (979)
..-+.|.||+|+|||||++++++..
T Consensus 30 Ge~~~i~G~NGsGKSTLlk~l~Gl~ 54 (263)
T 2pjz_A 30 GEKVIILGPNGSGKTTLLRAISGLL 54 (263)
T ss_dssp SSEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CEEEEEECCCCCCHHHHHHHHhCCC
Confidence 4458899999999999999999865
No 434
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*
Probab=88.08 E-value=0.24 Score=46.95 Aligned_cols=23 Identities=22% Similarity=0.533 Sum_probs=20.6
Q ss_pred ceeEecCCCCCChHHHHHHHHHH
Q 035561 489 RGVLIVGERGTGKTSLALAIAAE 511 (979)
Q Consensus 489 ~gVLL~GPPGTGKTtLArAlA~e 511 (979)
..|++.|++|+|||+|++++...
T Consensus 4 ~ki~v~G~~~~GKssli~~l~~~ 26 (167)
T 1c1y_A 4 YKLVVLGSGGVGKSALTVQFVQG 26 (167)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHC
T ss_pred eEEEEECCCCCCHHHHHHHHHcC
Confidence 35899999999999999999874
No 435
>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}
Probab=88.00 E-value=0.28 Score=47.88 Aligned_cols=24 Identities=25% Similarity=0.553 Sum_probs=21.5
Q ss_pred CceeEecCCCCCChHHHHHHHHHH
Q 035561 488 PRGVLIVGERGTGKTSLALAIAAE 511 (979)
Q Consensus 488 P~gVLL~GPPGTGKTtLArAlA~e 511 (979)
+-.|++.|++|+|||+|+.++.+.
T Consensus 7 ~~ki~v~G~~~~GKSsli~~l~~~ 30 (208)
T 3clv_A 7 SYKTVLLGESSVGKSSIVLRLTKD 30 (208)
T ss_dssp SEEEEEECCTTSSHHHHHHHHHHS
T ss_pred ceEEEEECCCCCCHHHHHHHHHhC
Confidence 356999999999999999999985
No 436
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=87.99 E-value=0.12 Score=51.94 Aligned_cols=24 Identities=33% Similarity=0.397 Sum_probs=21.6
Q ss_pred eeEecCCCCCChHHHHHHHHHHcC
Q 035561 490 GVLIVGERGTGKTSLALAIAAEAR 513 (979)
Q Consensus 490 gVLL~GPPGTGKTtLArAlA~elg 513 (979)
.+.|.|++|||||||++.+++.+.
T Consensus 4 ~v~IvG~SGsGKSTL~~~L~~~~~ 27 (171)
T 2f1r_A 4 ILSIVGTSDSGKTTLITRMMPILR 27 (171)
T ss_dssp EEEEEESCHHHHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHhh
Confidence 578999999999999999999763
No 437
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A
Probab=87.95 E-value=0.21 Score=47.52 Aligned_cols=23 Identities=26% Similarity=0.654 Sum_probs=20.5
Q ss_pred ceeEecCCCCCChHHHHHHHHHH
Q 035561 489 RGVLIVGERGTGKTSLALAIAAE 511 (979)
Q Consensus 489 ~gVLL~GPPGTGKTtLArAlA~e 511 (979)
..|++.|++|+|||+|+.++.+.
T Consensus 4 ~~i~v~G~~~~GKssli~~l~~~ 26 (170)
T 1g16_A 4 MKILLIGDSGVGKSCLLVRFVED 26 (170)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHC
T ss_pred eEEEEECcCCCCHHHHHHHHHhC
Confidence 35899999999999999999864
No 438
>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*
Probab=87.93 E-value=0.24 Score=48.09 Aligned_cols=23 Identities=30% Similarity=0.450 Sum_probs=20.9
Q ss_pred ceeEecCCCCCChHHHHHHHHHH
Q 035561 489 RGVLIVGERGTGKTSLALAIAAE 511 (979)
Q Consensus 489 ~gVLL~GPPGTGKTtLArAlA~e 511 (979)
..|++.|++|+|||+|+.++...
T Consensus 12 ~ki~v~G~~~~GKSsli~~l~~~ 34 (195)
T 3bc1_A 12 IKFLALGDSGVGKTSVLYQYTDG 34 (195)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHhcC
Confidence 46999999999999999999874
No 439
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=87.93 E-value=0.21 Score=48.84 Aligned_cols=23 Identities=22% Similarity=0.471 Sum_probs=20.7
Q ss_pred ceeEecCCCCCChHHHHHHHHHH
Q 035561 489 RGVLIVGERGTGKTSLALAIAAE 511 (979)
Q Consensus 489 ~gVLL~GPPGTGKTtLArAlA~e 511 (979)
..|.|.|++|+|||+|++++++.
T Consensus 8 ~~i~lvG~~gvGKStL~~~l~~~ 30 (188)
T 2wjg_A 8 YEIALIGNPNVGKSTIFNALTGE 30 (188)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTT
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 46899999999999999999874
No 440
>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A*
Probab=87.90 E-value=1.6 Score=43.64 Aligned_cols=23 Identities=26% Similarity=0.486 Sum_probs=20.5
Q ss_pred ceeEecCCCCCChHHHHHHHHHH
Q 035561 489 RGVLIVGERGTGKTSLALAIAAE 511 (979)
Q Consensus 489 ~gVLL~GPPGTGKTtLArAlA~e 511 (979)
..|+|.|++|+|||+|+.++...
T Consensus 26 ~ki~vvG~~~~GKSsLi~~l~~~ 48 (217)
T 2f7s_A 26 IKLLALGDSGVGKTTFLYRYTDN 48 (217)
T ss_dssp EEEEEESCTTSSHHHHHHHHHCS
T ss_pred EEEEEECcCCCCHHHHHHHHhcC
Confidence 35999999999999999999864
No 441
>3b4r_A Putative zinc metalloprotease MJ0392; intramembrane protease, CBS domain, hydrolase, metal-binding, transmembrane; 3.30A {Methanocaldococcus jannaschii}
Probab=87.90 E-value=0.26 Score=51.88 Aligned_cols=56 Identities=14% Similarity=0.228 Sum_probs=42.4
Q ss_pred chhhhhhhHHHHHhhcCCCCccceEEeecCCcCcceeeeeccccccCCCCCCcccHHHHHHHHHHHhhhHHHHHhh
Q 035561 767 PHAVWAAGRGLIALLLPNFDTVDNLWLEPCAWEGIGCTKITKAEKEGSMSGNPESRSYLEKKLVFCFGSYAAAQLL 842 (979)
Q Consensus 767 ~iAyHEAGHALVa~lLp~~dpV~kVtIiPrg~~alG~t~~~~~~~~~~~~~~~~Tk~~L~~~I~vlLgGRaAEElv 842 (979)
.+..||.||+++|..+. +++.++++.|-| |++.+.. . ++ .+++.+.+||-.+.-++
T Consensus 50 ~v~~HElgH~~~A~~~G--~~~~~i~l~p~G----g~~~~~~---------~--~~---~~~~~ValAGPl~nl~l 105 (224)
T 3b4r_A 50 SVVLHELGHSYVAKKYG--VKIEKILLLPIG----GVAMMDK---------I--PK---EGELRIGIAGPLVSFII 105 (224)
T ss_dssp HHHHHHHHHHHHHHHHH--CCCCCEEECSSS----CBCCCCC---------C--CS---SSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcC--CccccEEEEEee----eEEEccc---------C--Cc---cceeeeeeeHHHHHHHH
Confidence 36789999999999985 588899999965 5664321 1 12 45788999999998765
No 442
>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}
Probab=87.82 E-value=0.17 Score=57.47 Aligned_cols=28 Identities=25% Similarity=0.332 Sum_probs=23.2
Q ss_pred CCCCceeEecCCCCCChHHHHHHHHHHc
Q 035561 485 ARAPRGVLIVGERGTGKTSLALAIAAEA 512 (979)
Q Consensus 485 ~~~P~gVLL~GPPGTGKTtLArAlA~el 512 (979)
++...-+.|.||+|||||||+++||+-.
T Consensus 44 i~~Ge~~~llGpsGsGKSTLLr~iaGl~ 71 (390)
T 3gd7_A 44 ISPGQRVGLLGRTGSGKSTLLSAFLRLL 71 (390)
T ss_dssp ECTTCEEEEEESTTSSHHHHHHHHHTCS
T ss_pred EcCCCEEEEECCCCChHHHHHHHHhCCC
Confidence 3444568899999999999999999754
No 443
>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=87.79 E-value=0.28 Score=48.58 Aligned_cols=25 Identities=28% Similarity=0.478 Sum_probs=22.0
Q ss_pred CCceeEecCCCCCChHHHHHHHHHH
Q 035561 487 APRGVLIVGERGTGKTSLALAIAAE 511 (979)
Q Consensus 487 ~P~gVLL~GPPGTGKTtLArAlA~e 511 (979)
....|++.|++|+|||+|+.++...
T Consensus 27 ~~~ki~v~G~~~vGKSsli~~l~~~ 51 (196)
T 2atv_A 27 AEVKLAIFGRAGVGKSALVVRFLTK 51 (196)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHS
T ss_pred CceEEEEECCCCCCHHHHHHHHHhC
Confidence 3456999999999999999999875
No 444
>1wp9_A ATP-dependent RNA helicase, putative; ATPase, DNA replication, DNA repair, DNA recombina hydrolase; 2.90A {Pyrococcus furiosus} SCOP: c.37.1.19 c.37.1.19
Probab=87.79 E-value=1.1 Score=49.50 Aligned_cols=33 Identities=33% Similarity=0.333 Sum_probs=25.6
Q ss_pred eeEecCCCCCChHHHHHHHHHHc----CCCEEEeech
Q 035561 490 GVLIVGERGTGKTSLALAIAAEA----RVPVVNVEAQ 522 (979)
Q Consensus 490 gVLL~GPPGTGKTtLArAlA~el----g~~~i~Is~s 522 (979)
++++.+|+|+|||..+-+++... +.+++.+...
T Consensus 25 ~~ll~~~tG~GKT~~~~~~~~~~~~~~~~~~liv~P~ 61 (494)
T 1wp9_A 25 NCLIVLPTGLGKTLIAMMIAEYRLTKYGGKVLMLAPT 61 (494)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHHHHHSCSCEEEECSS
T ss_pred CEEEEcCCCCCHHHHHHHHHHHHHhcCCCeEEEEECC
Confidence 69999999999999888776664 5566665543
No 445
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*
Probab=87.76 E-value=0.24 Score=47.23 Aligned_cols=21 Identities=43% Similarity=0.719 Sum_probs=19.0
Q ss_pred eeEecCCCCCChHHHHHHHHH
Q 035561 490 GVLIVGERGTGKTSLALAIAA 510 (979)
Q Consensus 490 gVLL~GPPGTGKTtLArAlA~ 510 (979)
.|++.|++|+|||+|+.++.+
T Consensus 4 ki~ivG~~~~GKSsli~~l~~ 24 (169)
T 3q85_A 4 KVMLVGESGVGKSTLAGTFGG 24 (169)
T ss_dssp EEEEECSTTSSHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHh
Confidence 389999999999999999974
No 446
>4ag6_A VIRB4 ATPase, type IV secretory pathway VIRB4 components-like P; hydrolase, type IV secretion, conjugation; 2.35A {Thermoanaerobacter pseudethanolicus} PDB: 4ag5_A
Probab=87.75 E-value=0.41 Score=53.54 Aligned_cols=26 Identities=19% Similarity=0.225 Sum_probs=22.4
Q ss_pred CCceeEecCCCCCChHHHHHHHHHHc
Q 035561 487 APRGVLIVGERGTGKTSLALAIAAEA 512 (979)
Q Consensus 487 ~P~gVLL~GPPGTGKTtLArAlA~el 512 (979)
...++++.||+|+|||++++.++..+
T Consensus 34 ~~~~~~i~G~~G~GKs~~~~~~~~~~ 59 (392)
T 4ag6_A 34 TNSNWTILAKPGAGKSFTAKMLLLRE 59 (392)
T ss_dssp CCCCEEEECCTTSSHHHHHHHHHHHH
T ss_pred ccCceEEEcCCCCCHHHHHHHHHHHH
Confidence 34579999999999999999998654
No 447
>3lv8_A DTMP kinase, thymidylate kinase; structural genomics, in diseases, center for structural genomics of infectious DISE ATP-binding; HET: ADP TMP TYD; 1.80A {Vibrio cholerae o1 biovar eltor} PDB: 3n2i_A*
Probab=87.69 E-value=0.26 Score=52.14 Aligned_cols=25 Identities=20% Similarity=0.367 Sum_probs=22.3
Q ss_pred CceeEecCCCCCChHHHHHHHHHHc
Q 035561 488 PRGVLIVGERGTGKTSLALAIAAEA 512 (979)
Q Consensus 488 P~gVLL~GPPGTGKTtLArAlA~el 512 (979)
+.-|.|.|++|+||||+++.++..+
T Consensus 27 ~~~i~~eG~~GsGKsT~~~~l~~~l 51 (236)
T 3lv8_A 27 AKFIVIEGLEGAGKSTAIQVVVETL 51 (236)
T ss_dssp CCEEEEEESTTSCHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHH
Confidence 4568899999999999999999877
No 448
>3tbk_A RIG-I helicase domain; DECH helicase, ATP binding, hydrolase; HET: ANP; 2.14A {Mus musculus}
Probab=87.67 E-value=1.7 Score=49.56 Aligned_cols=34 Identities=29% Similarity=0.394 Sum_probs=24.6
Q ss_pred ceeEecCCCCCChHHHHHHHHHHc--------CCCEEEeech
Q 035561 489 RGVLIVGERGTGKTSLALAIAAEA--------RVPVVNVEAQ 522 (979)
Q Consensus 489 ~gVLL~GPPGTGKTtLArAlA~el--------g~~~i~Is~s 522 (979)
+++++.+|+|+|||..+-..+.+. +..++.+...
T Consensus 20 ~~~l~~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~~lil~P~ 61 (555)
T 3tbk_A 20 KNTIICAPTGCGKTFVSLLICEHHLKKFPCGQKGKVVFFANQ 61 (555)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHHHHHTCCSSCCCCEEEECSS
T ss_pred CCEEEEeCCCChHHHHHHHHHHHHHHhcccCCCCEEEEEeCC
Confidence 469999999999999876666543 5555555543
No 449
>3ld9_A DTMP kinase, thymidylate kinase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ehrlich chaffeensis; 2.15A {Ehrlichia chaffeensis}
Probab=87.59 E-value=0.3 Score=51.23 Aligned_cols=27 Identities=22% Similarity=0.193 Sum_probs=22.9
Q ss_pred CceeEecCCCCCChHHHHHHHHHHcCC
Q 035561 488 PRGVLIVGERGTGKTSLALAIAAEARV 514 (979)
Q Consensus 488 P~gVLL~GPPGTGKTtLArAlA~elg~ 514 (979)
+.-|.|.|++|+||||+++.+++.++.
T Consensus 21 ~~~i~~~G~~g~GKst~~~~l~~~l~~ 47 (223)
T 3ld9_A 21 SMFITFEGIDGSGKTTQSHLLAEYLSE 47 (223)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHhh
Confidence 455778899999999999999987643
No 450
>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*
Probab=87.56 E-value=0.12 Score=57.96 Aligned_cols=27 Identities=30% Similarity=0.352 Sum_probs=22.5
Q ss_pred CCCceeEecCCCCCChHHHHHHHHHHc
Q 035561 486 RAPRGVLIVGERGTGKTSLALAIAAEA 512 (979)
Q Consensus 486 ~~P~gVLL~GPPGTGKTtLArAlA~el 512 (979)
+...-+.|.||+|||||||.+++|+-.
T Consensus 29 ~~Ge~~~llGpnGsGKSTLLr~iaGl~ 55 (353)
T 1oxx_K 29 ENGERFGILGPSGAGKTTFMRIIAGLD 55 (353)
T ss_dssp CTTCEEEEECSCHHHHHHHHHHHHTSS
T ss_pred CCCCEEEEECCCCCcHHHHHHHHhCCC
Confidence 334457899999999999999999865
No 451
>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*
Probab=87.53 E-value=0.27 Score=47.18 Aligned_cols=24 Identities=25% Similarity=0.462 Sum_probs=21.4
Q ss_pred ceeEecCCCCCChHHHHHHHHHHc
Q 035561 489 RGVLIVGERGTGKTSLALAIAAEA 512 (979)
Q Consensus 489 ~gVLL~GPPGTGKTtLArAlA~el 512 (979)
..|++.|++|+|||+|+.++.+..
T Consensus 16 ~~i~v~G~~~~GKSsli~~l~~~~ 39 (179)
T 1z0f_A 16 FKYIIIGDMGVGKSCLLHQFTEKK 39 (179)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSC
T ss_pred eEEEEECCCCCCHHHHHHHHHcCC
Confidence 469999999999999999998754
No 452
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=87.45 E-value=0.73 Score=51.18 Aligned_cols=24 Identities=21% Similarity=0.223 Sum_probs=21.2
Q ss_pred ceeEecCCCCCChHHHHHHHHHHc
Q 035561 489 RGVLIVGERGTGKTSLALAIAAEA 512 (979)
Q Consensus 489 ~gVLL~GPPGTGKTtLArAlA~el 512 (979)
.-+.|.|+||+|||||..++++.+
T Consensus 75 ~~v~lvG~pgaGKSTLln~L~~~~ 98 (349)
T 2www_A 75 FRVGLSGPPGAGKSTFIEYFGKML 98 (349)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHH
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHh
Confidence 458899999999999999999864
No 453
>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*
Probab=87.45 E-value=0.24 Score=47.65 Aligned_cols=23 Identities=35% Similarity=0.608 Sum_probs=20.5
Q ss_pred ceeEecCCCCCChHHHHHHHHHH
Q 035561 489 RGVLIVGERGTGKTSLALAIAAE 511 (979)
Q Consensus 489 ~gVLL~GPPGTGKTtLArAlA~e 511 (979)
..|++.|++|+|||+|+.++...
T Consensus 7 ~ki~v~G~~~~GKssl~~~l~~~ 29 (178)
T 2hxs_A 7 LKIVVLGDGASGKTSLTTCFAQE 29 (178)
T ss_dssp EEEEEECCTTSSHHHHHHHHHGG
T ss_pred EEEEEECcCCCCHHHHHHHHHhC
Confidence 46999999999999999999854
No 454
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=87.44 E-value=0.16 Score=55.25 Aligned_cols=27 Identities=33% Similarity=0.476 Sum_probs=22.5
Q ss_pred CCCceeEecCCCCCChHHHHHHHHHHc
Q 035561 486 RAPRGVLIVGERGTGKTSLALAIAAEA 512 (979)
Q Consensus 486 ~~P~gVLL~GPPGTGKTtLArAlA~el 512 (979)
+...-+.|.||.|+|||||++++++..
T Consensus 62 ~~Ge~~~i~G~NGsGKSTLlk~l~Gl~ 88 (290)
T 2bbs_A 62 ERGQLLAVAGSTGAGKTSLLMMIMGEL 88 (290)
T ss_dssp CTTCEEEEEESTTSSHHHHHHHHTTSS
T ss_pred cCCCEEEEECCCCCcHHHHHHHHhcCC
Confidence 344558899999999999999999754
No 455
>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*
Probab=87.34 E-value=0.28 Score=47.58 Aligned_cols=24 Identities=25% Similarity=0.578 Sum_probs=21.2
Q ss_pred ceeEecCCCCCChHHHHHHHHHHc
Q 035561 489 RGVLIVGERGTGKTSLALAIAAEA 512 (979)
Q Consensus 489 ~gVLL~GPPGTGKTtLArAlA~el 512 (979)
-.|++.|++|+|||+|+.++.+..
T Consensus 5 ~ki~v~G~~~~GKSsli~~l~~~~ 28 (189)
T 4dsu_A 5 YKLVVVGADGVGKSALTIQLIQNH 28 (189)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHSS
T ss_pred EEEEEECCCCCCHHHHHHHHHhCC
Confidence 359999999999999999998754
No 456
>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*
Probab=87.30 E-value=0.5 Score=49.13 Aligned_cols=34 Identities=29% Similarity=0.321 Sum_probs=26.5
Q ss_pred CceeEecCCCCCChHHHHHHHHHHc--CCCEEEeec
Q 035561 488 PRGVLIVGERGTGKTSLALAIAAEA--RVPVVNVEA 521 (979)
Q Consensus 488 P~gVLL~GPPGTGKTtLArAlA~el--g~~~i~Is~ 521 (979)
+..+++.|.+|+||||++..+|..+ |..+..+++
T Consensus 14 ~~i~~~~GkgGvGKTTl~~~La~~l~~g~~v~vvd~ 49 (262)
T 1yrb_A 14 SMIVVFVGTAGSGKTTLTGEFGRYLEDNYKVAYVNL 49 (262)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHHTTTSCEEEEEC
T ss_pred eEEEEEeCCCCCCHHHHHHHHHHHHHCCCeEEEEeC
Confidence 4568889999999999999999765 555555553
No 457
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=87.30 E-value=0.89 Score=50.17 Aligned_cols=26 Identities=19% Similarity=0.257 Sum_probs=22.3
Q ss_pred CCceeEecCCCCCChHHHHHHHHHHc
Q 035561 487 APRGVLIVGERGTGKTSLALAIAAEA 512 (979)
Q Consensus 487 ~P~gVLL~GPPGTGKTtLArAlA~el 512 (979)
.+..+.+.|+||+||||++.+++..+
T Consensus 55 ~~~~i~i~G~~g~GKSTl~~~l~~~~ 80 (341)
T 2p67_A 55 NTLRLGVTGTPGAGKSTFLEAFGMLL 80 (341)
T ss_dssp CSEEEEEEECTTSCHHHHHHHHHHHH
T ss_pred CCEEEEEEcCCCCCHHHHHHHHHHHH
Confidence 34568899999999999999998765
No 458
>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*
Probab=87.23 E-value=0.3 Score=47.19 Aligned_cols=23 Identities=30% Similarity=0.658 Sum_probs=20.8
Q ss_pred ceeEecCCCCCChHHHHHHHHHH
Q 035561 489 RGVLIVGERGTGKTSLALAIAAE 511 (979)
Q Consensus 489 ~gVLL~GPPGTGKTtLArAlA~e 511 (979)
..|++.|++|+|||+|+.++...
T Consensus 13 ~ki~v~G~~~~GKSsli~~l~~~ 35 (181)
T 2efe_B 13 AKLVLLGDVGAGKSSLVLRFVKD 35 (181)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHC
T ss_pred eEEEEECcCCCCHHHHHHHHHcC
Confidence 46999999999999999999875
No 459
>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*
Probab=87.16 E-value=0.29 Score=47.31 Aligned_cols=24 Identities=33% Similarity=0.634 Sum_probs=21.3
Q ss_pred ceeEecCCCCCChHHHHHHHHHHc
Q 035561 489 RGVLIVGERGTGKTSLALAIAAEA 512 (979)
Q Consensus 489 ~gVLL~GPPGTGKTtLArAlA~el 512 (979)
..|++.|++|+|||+|+.+++...
T Consensus 19 ~ki~v~G~~~~GKSsli~~l~~~~ 42 (187)
T 2a9k_A 19 HKVIMVGSGGVGKSALTLQFMYDE 42 (187)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSC
T ss_pred eEEEEECCCCCCHHHHHHHHhhCC
Confidence 469999999999999999998743
No 460
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=87.16 E-value=0.29 Score=47.99 Aligned_cols=24 Identities=25% Similarity=0.569 Sum_probs=21.3
Q ss_pred ceeEecCCCCCChHHHHHHHHHHc
Q 035561 489 RGVLIVGERGTGKTSLALAIAAEA 512 (979)
Q Consensus 489 ~gVLL~GPPGTGKTtLArAlA~el 512 (979)
..|++.|++|+|||+|+.+++...
T Consensus 22 ~ki~vvG~~~~GKSsli~~l~~~~ 45 (190)
T 3con_A 22 YKLVVVGAGGVGKSALTIQLIQNH 45 (190)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSS
T ss_pred eEEEEECcCCCCHHHHHHHHHcCC
Confidence 368999999999999999998753
No 461
>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}
Probab=87.15 E-value=0.3 Score=48.62 Aligned_cols=25 Identities=16% Similarity=0.458 Sum_probs=21.4
Q ss_pred CCceeEecCCCCCChHHHHHHHHHH
Q 035561 487 APRGVLIVGERGTGKTSLALAIAAE 511 (979)
Q Consensus 487 ~P~gVLL~GPPGTGKTtLArAlA~e 511 (979)
.+..|++.|++|+|||+|+.++...
T Consensus 27 ~~~ki~v~G~~~~GKSsli~~l~~~ 51 (199)
T 2p5s_A 27 KAYKIVLAGDAAVGKSSFLMRLCKN 51 (199)
T ss_dssp -CEEEEEESSTTSSHHHHHHHHHHC
T ss_pred CCeEEEEECcCCCCHHHHHHHHHhC
Confidence 3456999999999999999999864
No 462
>1wrb_A DJVLGB; RNA helicase, DEAD BOX, VASA, structural genomics, NPPSFA, N project on protein structural and functional analyses; 2.40A {Dugesia japonica} SCOP: c.37.1.19
Probab=87.11 E-value=1.5 Score=45.46 Aligned_cols=18 Identities=33% Similarity=0.628 Sum_probs=15.2
Q ss_pred ceeEecCCCCCChHHHHH
Q 035561 489 RGVLIVGERGTGKTSLAL 506 (979)
Q Consensus 489 ~gVLL~GPPGTGKTtLAr 506 (979)
+++++.+|+|+|||..+-
T Consensus 61 ~~~l~~a~TGsGKT~~~~ 78 (253)
T 1wrb_A 61 RDIMACAQTGSGKTAAFL 78 (253)
T ss_dssp CCEEEECCTTSSHHHHHH
T ss_pred CCEEEECCCCChHHHHHH
Confidence 569999999999998543
No 463
>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*
Probab=87.06 E-value=0.25 Score=47.38 Aligned_cols=23 Identities=30% Similarity=0.447 Sum_probs=20.6
Q ss_pred ceeEecCCCCCChHHHHHHHHHH
Q 035561 489 RGVLIVGERGTGKTSLALAIAAE 511 (979)
Q Consensus 489 ~gVLL~GPPGTGKTtLArAlA~e 511 (979)
..|++.|++|+|||+|+.++...
T Consensus 15 ~~i~v~G~~~~GKssli~~l~~~ 37 (179)
T 2y8e_A 15 FKLVFLGEQSVGKTSLITRFMYD 37 (179)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHcC
Confidence 46999999999999999999864
No 464
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=87.04 E-value=0.3 Score=50.53 Aligned_cols=24 Identities=38% Similarity=0.455 Sum_probs=21.1
Q ss_pred CceeEecCCCCCChHHHHHHHHHH
Q 035561 488 PRGVLIVGERGTGKTSLALAIAAE 511 (979)
Q Consensus 488 P~gVLL~GPPGTGKTtLArAlA~e 511 (979)
+.-+.|.||.|+||||+++.+++.
T Consensus 20 g~~i~i~G~~GsGKSTl~~~L~~~ 43 (230)
T 2vp4_A 20 PFTVLIEGNIGSGKTTYLNHFEKY 43 (230)
T ss_dssp CEEEEEECSTTSCHHHHHHTTGGG
T ss_pred ceEEEEECCCCCCHHHHHHHHHhc
Confidence 345778999999999999999987
No 465
>4dkx_A RAS-related protein RAB-6A; GTP binding fold, membrane trafficking, GTP, cytosol, protei transport; HET: GDP; 1.90A {Homo sapiens} PDB: 3bbp_A*
Probab=87.03 E-value=0.59 Score=48.32 Aligned_cols=22 Identities=32% Similarity=0.516 Sum_probs=19.7
Q ss_pred eeEecCCCCCChHHHHHHHHHH
Q 035561 490 GVLIVGERGTGKTSLALAIAAE 511 (979)
Q Consensus 490 gVLL~GPPGTGKTtLArAlA~e 511 (979)
-|+|.|.+|+|||+|+..+...
T Consensus 15 KivlvGd~~VGKTsLi~r~~~~ 36 (216)
T 4dkx_A 15 KLVFLGEQSVGKTSLITRFMYD 36 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCcCHHHHHHHHHhC
Confidence 4899999999999999998864
No 466
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=86.89 E-value=0.15 Score=51.03 Aligned_cols=27 Identities=19% Similarity=0.263 Sum_probs=22.1
Q ss_pred CCCCceeEecCCCCCChHHHHHHHHHH
Q 035561 485 ARAPRGVLIVGERGTGKTSLALAIAAE 511 (979)
Q Consensus 485 ~~~P~gVLL~GPPGTGKTtLArAlA~e 511 (979)
.....-+.|.|++|+|||||.+++++.
T Consensus 23 ~~~~~~v~lvG~~g~GKSTLl~~l~g~ 49 (210)
T 1pui_A 23 SDTGIEVAFAGRSNAGKSSALNTLTNQ 49 (210)
T ss_dssp CSCSEEEEEEECTTSSHHHHHTTTCCC
T ss_pred CCCCcEEEEECCCCCCHHHHHHHHhCC
Confidence 444456899999999999999998754
No 467
>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}
Probab=86.89 E-value=0.3 Score=48.10 Aligned_cols=24 Identities=33% Similarity=0.537 Sum_probs=21.3
Q ss_pred ceeEecCCCCCChHHHHHHHHHHc
Q 035561 489 RGVLIVGERGTGKTSLALAIAAEA 512 (979)
Q Consensus 489 ~gVLL~GPPGTGKTtLArAlA~el 512 (979)
..|++.|++|+|||+|+.++...-
T Consensus 26 ~ki~v~G~~~~GKSsLi~~l~~~~ 49 (193)
T 2oil_A 26 FKVVLIGESGVGKTNLLSRFTRNE 49 (193)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHSC
T ss_pred eEEEEECcCCCCHHHHHHHHhcCC
Confidence 469999999999999999998753
No 468
>3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A*
Probab=86.86 E-value=1.8 Score=47.89 Aligned_cols=25 Identities=28% Similarity=0.567 Sum_probs=21.7
Q ss_pred CCCceeEecCCCCCChHHHHHHHHHH
Q 035561 486 RAPRGVLIVGERGTGKTSLALAIAAE 511 (979)
Q Consensus 486 ~~P~gVLL~GPPGTGKTtLArAlA~e 511 (979)
..| -|.+.|++|+|||++..++.+.
T Consensus 33 ~lp-~I~vvG~~~sGKSSLln~l~g~ 57 (360)
T 3t34_A 33 SLP-AIAVVGGQSSGKSSVLESIVGK 57 (360)
T ss_dssp CCC-EEEEECBTTSSHHHHHHHHHTS
T ss_pred cCC-EEEEECCCCCcHHHHHHHHhCC
Confidence 444 5899999999999999999984
No 469
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*
Probab=86.83 E-value=0.27 Score=47.28 Aligned_cols=23 Identities=26% Similarity=0.592 Sum_probs=21.0
Q ss_pred ceeEecCCCCCChHHHHHHHHHH
Q 035561 489 RGVLIVGERGTGKTSLALAIAAE 511 (979)
Q Consensus 489 ~gVLL~GPPGTGKTtLArAlA~e 511 (979)
..|++.|++|+|||+|+.++.+.
T Consensus 10 ~~i~v~G~~~~GKssli~~l~~~ 32 (181)
T 2fn4_A 10 HKLVVVGGGGVGKSALTIQFIQS 32 (181)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHhC
Confidence 46999999999999999999876
No 470
>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}
Probab=86.77 E-value=0.29 Score=47.02 Aligned_cols=23 Identities=43% Similarity=0.696 Sum_probs=20.3
Q ss_pred ceeEecCCCCCChHHHHHHHHHH
Q 035561 489 RGVLIVGERGTGKTSLALAIAAE 511 (979)
Q Consensus 489 ~gVLL~GPPGTGKTtLArAlA~e 511 (979)
..|++.|++|+|||+|+.++.+.
T Consensus 10 ~~i~v~G~~~~GKssl~~~l~~~ 32 (181)
T 3tw8_B 10 FKLLIIGDSGVGKSSLLLRFADN 32 (181)
T ss_dssp EEEEEECCTTSCHHHHHHHHCSC
T ss_pred eEEEEECCCCCCHHHHHHHHhcC
Confidence 45999999999999999999753
No 471
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*
Probab=86.73 E-value=0.31 Score=47.53 Aligned_cols=24 Identities=21% Similarity=0.128 Sum_probs=21.0
Q ss_pred ceeEecCCCCCChHHHHHHHHHHc
Q 035561 489 RGVLIVGERGTGKTSLALAIAAEA 512 (979)
Q Consensus 489 ~gVLL~GPPGTGKTtLArAlA~el 512 (979)
..|++.|++|+|||+|++.+.+..
T Consensus 15 ~ki~vvG~~~~GKssL~~~l~~~~ 38 (198)
T 3t1o_A 15 FKIVYYGPGLSGKTTNLKWIYSKV 38 (198)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHTS
T ss_pred cEEEEECCCCCCHHHHHHHHHhhc
Confidence 359999999999999999888754
No 472
>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}
Probab=86.71 E-value=0.25 Score=57.21 Aligned_cols=28 Identities=39% Similarity=0.415 Sum_probs=23.2
Q ss_pred CCCCceeEecCCCCCChHHHHHHHHHHc
Q 035561 485 ARAPRGVLIVGERGTGKTSLALAIAAEA 512 (979)
Q Consensus 485 ~~~P~gVLL~GPPGTGKTtLArAlA~el 512 (979)
+....-+.|.||.|||||||+|.+++..
T Consensus 135 i~~Ge~v~IvGpnGsGKSTLlr~L~Gl~ 162 (460)
T 2npi_A 135 NFEGPRVVIVGGSQTGKTSLSRTLCSYA 162 (460)
T ss_dssp SSSCCCEEEEESTTSSHHHHHHHHHHTT
T ss_pred eCCCCEEEEECCCCCCHHHHHHHHhCcc
Confidence 3344458999999999999999999865
No 473
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*
Probab=86.70 E-value=0.24 Score=47.07 Aligned_cols=21 Identities=38% Similarity=0.651 Sum_probs=19.0
Q ss_pred eeEecCCCCCChHHHHHHHHH
Q 035561 490 GVLIVGERGTGKTSLALAIAA 510 (979)
Q Consensus 490 gVLL~GPPGTGKTtLArAlA~ 510 (979)
.|++.|++|+|||+|++++.+
T Consensus 4 ki~~vG~~~~GKSsli~~l~~ 24 (166)
T 3q72_A 4 KVLLLGAPGVGKSALARIFGG 24 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHcC
Confidence 489999999999999999864
No 474
>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...
Probab=86.64 E-value=0.3 Score=47.29 Aligned_cols=23 Identities=26% Similarity=0.495 Sum_probs=20.5
Q ss_pred ceeEecCCCCCChHHHHHHHHHH
Q 035561 489 RGVLIVGERGTGKTSLALAIAAE 511 (979)
Q Consensus 489 ~gVLL~GPPGTGKTtLArAlA~e 511 (979)
..|++.|++|+|||+|+.++...
T Consensus 6 ~~i~~~G~~~~GKssl~~~l~~~ 28 (186)
T 1mh1_A 6 IKCVVVGDGAVGKTCLLISYTTN 28 (186)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHHcC
Confidence 35899999999999999999864
No 475
>3l9o_A ATP-dependent RNA helicase DOB1; REC-A fold, winged-helix-turn-helix, antiparallel-coiled-COI domain, ATP-binding, helicase, hydrolase; 3.39A {Saccharomyces cerevisiae}
Probab=86.64 E-value=0.99 Score=57.76 Aligned_cols=33 Identities=24% Similarity=0.325 Sum_probs=23.4
Q ss_pred ceeEecCCCCCChHHHHHHHHHHc---CCCEEEeec
Q 035561 489 RGVLIVGERGTGKTSLALAIAAEA---RVPVVNVEA 521 (979)
Q Consensus 489 ~gVLL~GPPGTGKTtLArAlA~el---g~~~i~Is~ 521 (979)
..+|++||+|+|||+.+-..+... +...+.+..
T Consensus 200 ~dvLV~ApTGSGKTlva~l~i~~~l~~g~rvlvl~P 235 (1108)
T 3l9o_A 200 ESVLVSAHTSAGKTVVAEYAIAQSLKNKQRVIYTSP 235 (1108)
T ss_dssp CCEEEECCSSSHHHHHHHHHHHHHHHTTCEEEEEES
T ss_pred CCEEEECCCCCChHHHHHHHHHHHHhcCCeEEEEcC
Confidence 579999999999999776554443 445555544
No 476
>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C
Probab=86.63 E-value=0.38 Score=46.43 Aligned_cols=24 Identities=25% Similarity=0.378 Sum_probs=21.2
Q ss_pred CceeEecCCCCCChHHHHHHHHHH
Q 035561 488 PRGVLIVGERGTGKTSLALAIAAE 511 (979)
Q Consensus 488 P~gVLL~GPPGTGKTtLArAlA~e 511 (979)
+..|++.|++|+|||+|+.++...
T Consensus 8 ~~ki~v~G~~~~GKssl~~~~~~~ 31 (182)
T 3bwd_D 8 FIKCVTVGDGAVGKTCLLISYTSN 31 (182)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEEECCCCCCHHHHHHHHhcC
Confidence 456999999999999999999864
No 477
>1dek_A Deoxynucleoside monophosphate kinase; transferase, phosphotransferase; HET: DGP; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1 PDB: 1del_A*
Probab=86.54 E-value=0.23 Score=52.80 Aligned_cols=26 Identities=19% Similarity=0.263 Sum_probs=23.7
Q ss_pred eEecCCCCCChHHHHHHHHHHcCCCE
Q 035561 491 VLIVGERGTGKTSLALAIAAEARVPV 516 (979)
Q Consensus 491 VLL~GPPGTGKTtLArAlA~elg~~~ 516 (979)
+.|+|++||||||+++.++..+|.+.
T Consensus 4 i~ltG~~~sGK~tv~~~l~~~~g~~~ 29 (241)
T 1dek_A 4 IFLSGVKRSGKDTTADFIMSNYSAVK 29 (241)
T ss_dssp EEEECCTTSSHHHHHHHHHHHSCEEE
T ss_pred EEEECCCCCCHHHHHHHHHHhcCCeE
Confidence 67999999999999999999888775
No 478
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=86.49 E-value=0.26 Score=55.47 Aligned_cols=27 Identities=22% Similarity=0.302 Sum_probs=22.7
Q ss_pred CCCceeEecCCCCCChHHHHHHHHHHc
Q 035561 486 RAPRGVLIVGERGTGKTSLALAIAAEA 512 (979)
Q Consensus 486 ~~P~gVLL~GPPGTGKTtLArAlA~el 512 (979)
+...-+-|.||+|+|||||++++++-.
T Consensus 52 ~~Gei~~IiGpnGaGKSTLlr~i~GL~ 78 (366)
T 3tui_C 52 PAGQIYGVIGASGAGKSTLIRCVNLLE 78 (366)
T ss_dssp CTTCEEEEECCTTSSHHHHHHHHHTSS
T ss_pred cCCCEEEEEcCCCchHHHHHHHHhcCC
Confidence 344557899999999999999999865
No 479
>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=86.45 E-value=0.33 Score=46.76 Aligned_cols=24 Identities=38% Similarity=0.585 Sum_probs=21.3
Q ss_pred ceeEecCCCCCChHHHHHHHHHHc
Q 035561 489 RGVLIVGERGTGKTSLALAIAAEA 512 (979)
Q Consensus 489 ~gVLL~GPPGTGKTtLArAlA~el 512 (979)
..|++.|++|+|||+|+.++....
T Consensus 11 ~~i~v~G~~~~GKssli~~l~~~~ 34 (180)
T 2g6b_A 11 FKVMLVGDSGVGKTCLLVRFKDGA 34 (180)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSC
T ss_pred eEEEEECcCCCCHHHHHHHHHhCC
Confidence 469999999999999999998753
No 480
>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*
Probab=86.40 E-value=0.28 Score=47.63 Aligned_cols=24 Identities=29% Similarity=0.488 Sum_probs=21.2
Q ss_pred ceeEecCCCCCChHHHHHHHHHHc
Q 035561 489 RGVLIVGERGTGKTSLALAIAAEA 512 (979)
Q Consensus 489 ~gVLL~GPPGTGKTtLArAlA~el 512 (979)
..|++.|++|+|||+|+.++.+..
T Consensus 11 ~ki~v~G~~~~GKSsli~~l~~~~ 34 (186)
T 2bme_A 11 FKFLVIGNAGTGKSCLLHQFIEKK 34 (186)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHSS
T ss_pred eEEEEECCCCCCHHHHHHHHHcCC
Confidence 469999999999999999998753
No 481
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=86.38 E-value=0.15 Score=58.87 Aligned_cols=46 Identities=22% Similarity=0.213 Sum_probs=39.5
Q ss_pred hhhhhhhhhhhhcCccccHHHHHHHHHhhhccc--------cccccccccCCCC
Q 035561 713 IVKKISRMLVDHLGLTLTKEDLQNVVDLMEPYG--------QISNGIELLTPPL 758 (979)
Q Consensus 713 llk~~~v~w~DiGGl~vtkedL~eAIe~~~kyg--------~i~aG~e~~sp~l 758 (979)
+.++|++.|+|+||+...+++|.+++++|.+++ +...|+.+++||+
T Consensus 172 ~~~~p~v~~~digGl~~~k~~l~e~v~~pl~~p~~f~~~g~~~prGvLL~GPPG 225 (437)
T 4b4t_L 172 SFEQGEITFDGIGGLTEQIRELREVIELPLKNPEIFQRVGIKPPKGVLLYGPPG 225 (437)
T ss_dssp EEESCSSCSGGGCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCCEEEEESCTT
T ss_pred eccCCCCChhHhCChHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCeEEEECCCC
Confidence 456789999999999999999999999876553 3367999999998
No 482
>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*
Probab=86.34 E-value=0.29 Score=48.01 Aligned_cols=23 Identities=30% Similarity=0.520 Sum_probs=20.9
Q ss_pred ceeEecCCCCCChHHHHHHHHHH
Q 035561 489 RGVLIVGERGTGKTSLALAIAAE 511 (979)
Q Consensus 489 ~gVLL~GPPGTGKTtLArAlA~e 511 (979)
..|++.|++|+|||+|+++++..
T Consensus 8 ~ki~v~G~~~vGKSsli~~l~~~ 30 (184)
T 1m7b_A 8 CKIVVVGDSQCGKTALLHVFAKD 30 (184)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHhcC
Confidence 45899999999999999999875
No 483
>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*
Probab=86.33 E-value=0.34 Score=47.04 Aligned_cols=23 Identities=26% Similarity=0.601 Sum_probs=20.9
Q ss_pred ceeEecCCCCCChHHHHHHHHHH
Q 035561 489 RGVLIVGERGTGKTSLALAIAAE 511 (979)
Q Consensus 489 ~gVLL~GPPGTGKTtLArAlA~e 511 (979)
..|++.|++|+|||+|+.++...
T Consensus 19 ~ki~v~G~~~~GKSsl~~~l~~~ 41 (183)
T 3kkq_A 19 YKLVVVGDGGVGKSALTIQFFQK 41 (183)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHhC
Confidence 46899999999999999999975
No 484
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*
Probab=86.33 E-value=0.35 Score=47.11 Aligned_cols=23 Identities=43% Similarity=0.533 Sum_probs=20.3
Q ss_pred eeEecCCCCCChHHHHHHHHHHc
Q 035561 490 GVLIVGERGTGKTSLALAIAAEA 512 (979)
Q Consensus 490 gVLL~GPPGTGKTtLArAlA~el 512 (979)
-.+|+||.|+|||++..|++-.+
T Consensus 25 ~~~I~G~NGsGKStil~Ai~~~l 47 (149)
T 1f2t_A 25 INLIIGQNGSGKSSLLDAILVGL 47 (149)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHH
Confidence 46899999999999999998655
No 485
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*
Probab=86.32 E-value=0.28 Score=48.18 Aligned_cols=24 Identities=17% Similarity=0.320 Sum_probs=21.2
Q ss_pred CceeEecCCCCCChHHHHHHHHHH
Q 035561 488 PRGVLIVGERGTGKTSLALAIAAE 511 (979)
Q Consensus 488 P~gVLL~GPPGTGKTtLArAlA~e 511 (979)
+..|++.|++|+|||+|+.++.+.
T Consensus 23 ~~~i~v~G~~~~GKSsli~~l~~~ 46 (195)
T 1svi_A 23 LPEIALAGRSNVGKSSFINSLINR 46 (195)
T ss_dssp CCEEEEEEBTTSSHHHHHHHHHTC
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 456999999999999999999864
No 486
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=86.30 E-value=0.26 Score=48.17 Aligned_cols=23 Identities=39% Similarity=0.514 Sum_probs=20.7
Q ss_pred ceeEecCCCCCChHHHHHHHHHH
Q 035561 489 RGVLIVGERGTGKTSLALAIAAE 511 (979)
Q Consensus 489 ~gVLL~GPPGTGKTtLArAlA~e 511 (979)
.-|.|.|+||+|||+|.+++++.
T Consensus 5 ~ki~ivG~~g~GKStLl~~l~~~ 27 (172)
T 2gj8_A 5 MKVVIAGRPNAGKSSLLNALAGR 27 (172)
T ss_dssp EEEEEEESTTSSHHHHHHHHHTS
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 45899999999999999999875
No 487
>2eyq_A TRCF, transcription-repair coupling factor; MFD, SF2 ATPase, hydrolase; HET: EPE; 3.20A {Escherichia coli} SCOP: b.34.18.1 c.37.1.19 c.37.1.19 c.37.1.19 c.37.1.19 d.315.1.1
Probab=86.15 E-value=3 Score=53.57 Aligned_cols=35 Identities=26% Similarity=0.336 Sum_probs=23.7
Q ss_pred CCceeEecCCCCCChHHHHHHHHH---HcCCCEEEeec
Q 035561 487 APRGVLIVGERGTGKTSLALAIAA---EARVPVVNVEA 521 (979)
Q Consensus 487 ~P~gVLL~GPPGTGKTtLArAlA~---elg~~~i~Is~ 521 (979)
.|..+|++||.|+|||.++-..|- ..+..++.+..
T Consensus 623 ~p~d~ll~~~TGsGKT~val~aa~~~~~~g~~vlvlvP 660 (1151)
T 2eyq_A 623 LAMDRLVCGDVGFGKTEVAMRAAFLAVDNHKQVAVLVP 660 (1151)
T ss_dssp SCCEEEEECCCCTTTHHHHHHHHHHHHTTTCEEEEECS
T ss_pred CcCcEEEECCCCCCHHHHHHHHHHHHHHhCCeEEEEec
Confidence 456899999999999987654432 22445555544
No 488
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=86.12 E-value=0.35 Score=49.08 Aligned_cols=25 Identities=24% Similarity=0.259 Sum_probs=22.0
Q ss_pred CceeEecCCCCCChHHHHHHHHHHc
Q 035561 488 PRGVLIVGERGTGKTSLALAIAAEA 512 (979)
Q Consensus 488 P~gVLL~GPPGTGKTtLArAlA~el 512 (979)
+..+++.|++|+|||+++..++...
T Consensus 38 ~~~i~ivG~~gvGKTtl~~~l~~~~ 62 (226)
T 2hf9_A 38 VVAFDFMGAIGSGKTLLIEKLIDNL 62 (226)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHHh
Confidence 3458888999999999999999876
No 489
>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*
Probab=86.09 E-value=0.35 Score=47.48 Aligned_cols=24 Identities=29% Similarity=0.515 Sum_probs=21.2
Q ss_pred ceeEecCCCCCChHHHHHHHHHHc
Q 035561 489 RGVLIVGERGTGKTSLALAIAAEA 512 (979)
Q Consensus 489 ~gVLL~GPPGTGKTtLArAlA~el 512 (979)
..|++.|++|+|||+|+.++.+.-
T Consensus 23 ~ki~vvG~~~~GKSsli~~l~~~~ 46 (189)
T 2gf9_A 23 FKLLLIGNSSVGKTSFLFRYADDS 46 (189)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSC
T ss_pred eEEEEECCCCCCHHHHHHHHHcCC
Confidence 369999999999999999998753
No 490
>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=86.03 E-value=0.31 Score=47.23 Aligned_cols=25 Identities=28% Similarity=0.486 Sum_probs=21.4
Q ss_pred CCCceeEecCCCCCChHHHHHHHHH
Q 035561 486 RAPRGVLIVGERGTGKTSLALAIAA 510 (979)
Q Consensus 486 ~~P~gVLL~GPPGTGKTtLArAlA~ 510 (979)
+.+..|++.|++|+|||+|+.++..
T Consensus 16 ~~~~~i~v~G~~~~GKssli~~l~~ 40 (183)
T 1moz_A 16 NKELRILILGLDGAGKTTILYRLQI 40 (183)
T ss_dssp SSCEEEEEEEETTSSHHHHHHHTCC
T ss_pred CCccEEEEECCCCCCHHHHHHHHhc
Confidence 3456799999999999999998874
No 491
>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}
Probab=86.01 E-value=0.36 Score=47.33 Aligned_cols=24 Identities=33% Similarity=0.654 Sum_probs=21.4
Q ss_pred ceeEecCCCCCChHHHHHHHHHHc
Q 035561 489 RGVLIVGERGTGKTSLALAIAAEA 512 (979)
Q Consensus 489 ~gVLL~GPPGTGKTtLArAlA~el 512 (979)
..|++.|++|+|||+|+.++....
T Consensus 17 ~ki~v~G~~~~GKSsli~~l~~~~ 40 (196)
T 3tkl_A 17 FKLLLIGDSGVGKSCLLLRFADDT 40 (196)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSC
T ss_pred eEEEEECcCCCCHHHHHHHHHcCC
Confidence 469999999999999999999753
No 492
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=85.98 E-value=0.34 Score=55.65 Aligned_cols=21 Identities=38% Similarity=0.596 Sum_probs=19.8
Q ss_pred eEecCCCCCChHHHHHHHHHH
Q 035561 491 VLIVGERGTGKTSLALAIAAE 511 (979)
Q Consensus 491 VLL~GPPGTGKTtLArAlA~e 511 (979)
+.|.||+|+|||||++++++.
T Consensus 45 vaLvG~nGaGKSTLln~L~G~ 65 (427)
T 2qag_B 45 ILCVGETGLGKSTLMDTLFNT 65 (427)
T ss_dssp EEEECSTTSSSHHHHHHHHTS
T ss_pred EEEECCCCCCHHHHHHHHhCc
Confidence 789999999999999999976
No 493
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=85.92 E-value=0.17 Score=55.62 Aligned_cols=29 Identities=17% Similarity=0.253 Sum_probs=24.0
Q ss_pred CCCCceeEecCCCCCChHHHHHHHHHHcC
Q 035561 485 ARAPRGVLIVGERGTGKTSLALAIAAEAR 513 (979)
Q Consensus 485 ~~~P~gVLL~GPPGTGKTtLArAlA~elg 513 (979)
++...-+.|.||+|+|||||++++++...
T Consensus 77 i~~Ge~vaivG~sGsGKSTLl~ll~gl~~ 105 (306)
T 3nh6_A 77 VMPGQTLALVGPSGAGKSTILRLLFRFYD 105 (306)
T ss_dssp ECTTCEEEEESSSCHHHHHHHHHHTTSSC
T ss_pred EcCCCEEEEECCCCchHHHHHHHHHcCCC
Confidence 34456688999999999999999997653
No 494
>2wjy_A Regulator of nonsense transcripts 1; nonsense mediated decay, zinc-finger, ATP-binding, metal-BIN UPF2, UPF1, helicase, hydrolase; 2.50A {Homo sapiens} PDB: 2wjv_A 2iyk_A
Probab=85.87 E-value=0.33 Score=60.00 Aligned_cols=23 Identities=39% Similarity=0.393 Sum_probs=19.3
Q ss_pred eeEecCCCCCChHHHHHHHHHHc
Q 035561 490 GVLIVGERGTGKTSLALAIAAEA 512 (979)
Q Consensus 490 gVLL~GPPGTGKTtLArAlA~el 512 (979)
..++.||||||||+++..++..+
T Consensus 373 ~~lI~GppGTGKT~ti~~~i~~l 395 (800)
T 2wjy_A 373 LSLIQGPPGTGKTVTSATIVYHL 395 (800)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHH
T ss_pred eEEEEcCCCCCHHHHHHHHHHHH
Confidence 47899999999999888777654
No 495
>4tmk_A Protein (thymidylate kinase); ATP:DTMP phosphotransferase, transferase; HET: T5A; 1.98A {Escherichia coli} SCOP: c.37.1.1 PDB: 5tmp_A*
Probab=85.80 E-value=0.38 Score=49.89 Aligned_cols=24 Identities=25% Similarity=0.392 Sum_probs=21.4
Q ss_pred ceeEecCCCCCChHHHHHHHHHHc
Q 035561 489 RGVLIVGERGTGKTSLALAIAAEA 512 (979)
Q Consensus 489 ~gVLL~GPPGTGKTtLArAlA~el 512 (979)
.-|.|.|++|+||||+++.++..+
T Consensus 4 ~~i~~eG~~gsGKsT~~~~l~~~l 27 (213)
T 4tmk_A 4 KYIVIEGLEGAGKTTARNVVVETL 27 (213)
T ss_dssp CEEEEEECTTSCHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHH
Confidence 347889999999999999999877
No 496
>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*
Probab=85.75 E-value=0.34 Score=48.07 Aligned_cols=23 Identities=26% Similarity=0.433 Sum_probs=20.8
Q ss_pred ceeEecCCCCCChHHHHHHHHHH
Q 035561 489 RGVLIVGERGTGKTSLALAIAAE 511 (979)
Q Consensus 489 ~gVLL~GPPGTGKTtLArAlA~e 511 (979)
..|++.|++|+|||+|++++++.
T Consensus 24 ~ki~~vG~~~vGKSsli~~l~~~ 46 (190)
T 1m2o_B 24 GKLLFLGLDNAGKTTLLHMLKND 46 (190)
T ss_dssp CEEEEEESTTSSHHHHHHHHHHS
T ss_pred cEEEEECCCCCCHHHHHHHHhcC
Confidence 46999999999999999999874
No 497
>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*
Probab=85.74 E-value=0.31 Score=47.62 Aligned_cols=27 Identities=22% Similarity=0.348 Sum_probs=22.2
Q ss_pred CCCceeEecCCCCCChHHHHHHHHHHc
Q 035561 486 RAPRGVLIVGERGTGKTSLALAIAAEA 512 (979)
Q Consensus 486 ~~P~gVLL~GPPGTGKTtLArAlA~el 512 (979)
+.+..|++.|++|+|||+|+.++.+.-
T Consensus 16 ~~~~~i~v~G~~~~GKssl~~~l~~~~ 42 (186)
T 1ksh_A 16 ERELRLLMLGLDNAGKTTILKKFNGED 42 (186)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHTTCC
T ss_pred CCeeEEEEECCCCCCHHHHHHHHhcCC
Confidence 345679999999999999999998643
No 498
>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}
Probab=85.70 E-value=0.54 Score=54.06 Aligned_cols=28 Identities=21% Similarity=0.233 Sum_probs=24.0
Q ss_pred CceeEecCCCCCChHHHHHHHHHHcCCC
Q 035561 488 PRGVLIVGERGTGKTSLALAIAAEARVP 515 (979)
Q Consensus 488 P~gVLL~GPPGTGKTtLArAlA~elg~~ 515 (979)
..-+.|.||+|||||||++.+++.....
T Consensus 157 Gq~~~IvG~sGsGKSTLl~~Iag~~~~~ 184 (438)
T 2dpy_A 157 GQRMGLFAGSGVGKSVLLGMMARYTRAD 184 (438)
T ss_dssp TCEEEEEECTTSSHHHHHHHHHHHSCCS
T ss_pred CCEEEEECCCCCCHHHHHHHHhcccCCC
Confidence 3458899999999999999999987643
No 499
>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}
Probab=85.69 E-value=0.38 Score=47.57 Aligned_cols=24 Identities=33% Similarity=0.634 Sum_probs=21.2
Q ss_pred ceeEecCCCCCChHHHHHHHHHHc
Q 035561 489 RGVLIVGERGTGKTSLALAIAAEA 512 (979)
Q Consensus 489 ~gVLL~GPPGTGKTtLArAlA~el 512 (979)
..|++.|++|+|||+|+.++....
T Consensus 15 ~ki~v~G~~~~GKSsli~~l~~~~ 38 (206)
T 2bov_A 15 HKVIMVGSGGVGKSALTLQFMYDE 38 (206)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEEECCCCCCHHHHHHHHHhCC
Confidence 469999999999999999998753
No 500
>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8
Probab=85.68 E-value=0.38 Score=46.99 Aligned_cols=24 Identities=42% Similarity=0.720 Sum_probs=21.3
Q ss_pred ceeEecCCCCCChHHHHHHHHHHc
Q 035561 489 RGVLIVGERGTGKTSLALAIAAEA 512 (979)
Q Consensus 489 ~gVLL~GPPGTGKTtLArAlA~el 512 (979)
..|++.|++|+|||+|+.++....
T Consensus 16 ~~i~v~G~~~~GKssli~~l~~~~ 39 (195)
T 1x3s_A 16 LKILIIGESGVGKSSLLLRFTDDT 39 (195)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSC
T ss_pred eEEEEECCCCCCHHHHHHHHHcCC
Confidence 469999999999999999998753
Done!