BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 035566
(238 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q09893|YAI5_SCHPO Uncharacterized protein C24B11.05 OS=Schizosaccharomyces pombe
(strain 972 / ATCC 24843) GN=SPAC24B11.05 PE=3 SV=1
Length = 226
Score = 86.7 bits (213), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 51/129 (39%), Positives = 71/129 (55%), Gaps = 4/129 (3%)
Query: 7 LLFDVDDTLYSHSYGFSNKCSKNIEEYMIQKLGIEESEVSEFNRVLYKNYGTSMAGLKAV 66
+ FD+D+ LY SY N + I + KLGI E V Y++YG ++ GL +
Sbjct: 8 IFFDLDNCLYPKSYKIHNMMAARITAFFSDKLGIPTEEAERLREVYYRHYGIAIRGL-VL 66
Query: 67 GYDFDNDDYHSFVHGRLPYEN-LKPDPVLRNLLLSL--PIRKVIFSNADEIHVAKVLRKL 123
++ D DY V LP E +K D VLR +LL L + IF+NA +H +VL+ L
Sbjct: 67 HHEIDAVDYDQRVDQSLPLEKVIKKDEVLREMLLELRKKYKCWIFTNAYIVHANRVLKYL 126
Query: 124 GLEDCFDGI 132
G+EDCFDGI
Sbjct: 127 GIEDCFDGI 135
>sp|P53078|SDT1_YEAST Suppressor of disruption of TFIIS OS=Saccharomyces cerevisiae
(strain ATCC 204508 / S288c) GN=SDT1 PE=1 SV=1
Length = 280
Score = 70.1 bits (170), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 56/196 (28%), Positives = 92/196 (46%), Gaps = 19/196 (9%)
Query: 5 ECLLFDVDDTLYSHSYGFSNKCSKNIEEYMIQKLGIEESEVSEFNRVLYKNYGTSMAGLK 64
+ FD+D+ LY S + ++I + L + + N YK YG ++ GL
Sbjct: 56 KVFFFDIDNCLYKSSTRIHDLMQQSILRFFQTHLKLSPEDAHVLNNSYYKEYGLAIRGL- 114
Query: 65 AVGYDFDNDDYHSFVHGRLPYEN-LKPDPVLRNLLLSL----PIRKV-IFSNADEIHVAK 118
+ + + +Y+ V LP ++ LKPD LRN+LL L I K+ +F+NA + H +
Sbjct: 115 VMFHKVNALEYNRLVDDSLPLQDILKPDIPLRNMLLRLRQSGKIDKLWLFTNAYKNHAIR 174
Query: 119 VLRKLGLEDCFDGIVNFE-------SLNPTNKTTGQELQLISMLRMVAHHFFQRLFFDDS 171
LR LG+ D FDG+ + P K + ++ + R + F DDS
Sbjct: 175 CLRLLGIADLFDGLTYCDYSRTDTLVCKPHVKAFEKAMKESGLAR-----YENAYFIDDS 229
Query: 172 TRNIECGKSIGLHTVL 187
+NIE G +G+ T +
Sbjct: 230 GKNIETGIKLGMKTCI 245
>sp|P40025|PHM8_YEAST Phosphate metabolism protein 8 OS=Saccharomyces cerevisiae (strain
ATCC 204508 / S288c) GN=PHM8 PE=1 SV=1
Length = 321
Score = 57.4 bits (137), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 61/232 (26%), Positives = 102/232 (43%), Gaps = 20/232 (8%)
Query: 5 ECLLFDVDDTLYSHSYGFSNKCSKNIEEYMIQKLGIEESEVSEFNRVLYKNYGTSMAGLK 64
+ FD+D+TLY S +++ + +LG ++ E Y+ YG S+ GL
Sbjct: 53 KVFFFDIDNTLYRKSTKVQLLMQQSLSNFFKYELGFDDDEAERLIESYYQEYGLSVKGLI 112
Query: 65 AVGYDFDNDDYHSFVHGRLPYEN-LKPDPVLRNLLLSLPIRKV-------IFSNADEIHV 116
D Y++F+ LP ++ LKPD LR LL++L +K+ +F+N+ + H
Sbjct: 113 KNKQIDDVLQYNTFIDDSLPLQDYLKPDWKLRELLINLKKKKLGKFDKLWLFTNSYKNHA 172
Query: 117 AKVLRKLGLEDCFDGIVNFESLNPTNK----TTGQELQLISMLRMVAHHFFQRLFFDDST 172
+ ++ LG+ D FDGI P + + + L+ F F DD+
Sbjct: 173 IRCVKILGIADLFDGITYCHYDRPIEEEFICKPDPKFFETAKLQSGLSSFANAWFIDDNE 232
Query: 173 RNIECGKSIGLHTVLVGTSRRTKGADYALENI----HNIREAFPELWDADEI 220
N+ S+G+ V+ + Y ENI H ++ F L D EI
Sbjct: 233 SNVRSALSMGMGHVI----HLIEDYQYESENIVTKDHKNKQQFSILKDILEI 280
>sp|Q9ZE95|Y050_RICPR Uncharacterized protein RP050 OS=Rickettsia prowazekii (strain
Madrid E) GN=RP050 PE=4 SV=2
Length = 188
Score = 32.0 bits (71), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 29/109 (26%), Positives = 49/109 (44%), Gaps = 19/109 (17%)
Query: 117 AKVLRKLGLEDCFDGI----VNFESLNPTNKTTGQELQLISMLRMVAHHFFQRLFFDDST 172
+K++++LGLED FD + + +N G+ ++ + H+ Q +F D
Sbjct: 65 SKLMKQLGLEDTFDKVSLPGASLALVNEKYTYWGKTIEDTIEILQALHNIEQIVFLDHR- 123
Query: 173 RNIECGKSIGLHTVLVG-----TSRRTKGADYALENIHN--IREAFPEL 214
ECG + +L+G T + K A + N IRE FP+L
Sbjct: 124 ---ECGA----YNILIGNEHLNTKEKEKVAHAEILNKARDIIREKFPQL 165
>sp|Q5G1T1|PP272_ARATH Pentatricopeptide repeat-containing protein At3g49170,
chloroplastic OS=Arabidopsis thaliana GN=EMB2261 PE=2
SV=1
Length = 850
Score = 32.0 bits (71), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 21/78 (26%), Positives = 40/78 (51%), Gaps = 6/78 (7%)
Query: 78 FVHGRLPYENLKPDPVLRNLLLSLPIRKVIFSNADEIHVAKVLRKLGLEDCFDGIVNFES 137
VH RL +++PD VL N L+SL + + A+++ + +R+ G D +V++ +
Sbjct: 83 LVHARLIEFDIEPDSVLYNSLISLYSKSGDSAKAEDVF--ETMRRFGKRD----VVSWSA 136
Query: 138 LNPTNKTTGQELQLISML 155
+ G+EL I +
Sbjct: 137 MMACYGNNGRELDAIKVF 154
>sp|A5VBZ8|RPOB_SPHWW DNA-directed RNA polymerase subunit beta OS=Sphingomonas wittichii
(strain RW1 / DSM 6014 / JCM 10273) GN=rpoB PE=3 SV=1
Length = 1455
Score = 32.0 bits (71), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 19/63 (30%), Positives = 35/63 (55%), Gaps = 8/63 (12%)
Query: 74 DYHSFVHGRLPYENLKPDPVLRNLLLSLPIRKVIFSNADEIHVAKVLRKLGLEDC----- 128
+YH+ + GR + ++ +L+N +P+ +F A E VA++LR+ GL++
Sbjct: 1254 EYHADIEGRSTDQIVEMAGLLKN---GVPMATPVFDGAREADVAEMLRRAGLDESGQVEL 1310
Query: 129 FDG 131
FDG
Sbjct: 1311 FDG 1313
>sp|P75290|Y497_MYCPN Uncharacterized protein MPN_497 OS=Mycoplasma pneumoniae (strain
ATCC 29342 / M129) GN=MPN_497 PE=1 SV=3
Length = 216
Score = 31.6 bits (70), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 15/32 (46%), Positives = 21/32 (65%), Gaps = 4/32 (12%)
Query: 104 RKVIFS----NADEIHVAKVLRKLGLEDCFDG 131
RK+ S N DE + AK++R+LG+ CFDG
Sbjct: 141 RKIQLSHLNKNPDEYYYAKIIRELGVTLCFDG 172
>sp|B9J194|Y4506_BACCQ UPF0354 protein BCQ_4506 OS=Bacillus cereus (strain Q1) GN=BCQ_4506
PE=3 SV=1
Length = 270
Score = 30.8 bits (68), Expect = 9.2, Method: Compositional matrix adjust.
Identities = 16/51 (31%), Positives = 28/51 (54%), Gaps = 10/51 (19%)
Query: 23 SNKCSKNIEEYMIQKLGIEESEVSEFNRVLYKNYGTSMAGLKAVGYDFDND 73
SNK + I+E ++QKLG+ E +V E ++ +++GY+F D
Sbjct: 122 SNKTYRLIDERLLQKLGLTEQQVREM----------ALFNARSLGYEFKQD 162
>sp|Q72Z34|Y4835_BACC1 UPF0354 protein BCE_4835 OS=Bacillus cereus (strain ATCC 10987)
GN=BCE_4835 PE=3 SV=1
Length = 270
Score = 30.8 bits (68), Expect = 9.4, Method: Compositional matrix adjust.
Identities = 16/51 (31%), Positives = 28/51 (54%), Gaps = 10/51 (19%)
Query: 23 SNKCSKNIEEYMIQKLGIEESEVSEFNRVLYKNYGTSMAGLKAVGYDFDND 73
SNK + I+E ++QKLG+ E +V E ++ +++GY+F D
Sbjct: 122 SNKTYRLIDERLLQKLGLTEQQVREM----------ALFNARSLGYEFKQD 162
>sp|C1EVW0|Y4815_BACC3 UPF0354 protein BCA_4815 OS=Bacillus cereus (strain 03BB102)
GN=BCA_4815 PE=3 SV=1
Length = 270
Score = 30.8 bits (68), Expect = 9.4, Method: Compositional matrix adjust.
Identities = 16/51 (31%), Positives = 28/51 (54%), Gaps = 10/51 (19%)
Query: 23 SNKCSKNIEEYMIQKLGIEESEVSEFNRVLYKNYGTSMAGLKAVGYDFDND 73
SNK + I+E ++QKLG+ E +V E ++ +++GY+F D
Sbjct: 122 SNKTYRLIDERLLQKLGLTEQQVREM----------ALFNARSLGYEFKQD 162
>sp|A0RJT1|Y4267_BACAH UPF0354 protein BALH_4267 OS=Bacillus thuringiensis (strain Al
Hakam) GN=BALH_4267 PE=3 SV=1
Length = 270
Score = 30.8 bits (68), Expect = 9.4, Method: Compositional matrix adjust.
Identities = 16/51 (31%), Positives = 28/51 (54%), Gaps = 10/51 (19%)
Query: 23 SNKCSKNIEEYMIQKLGIEESEVSEFNRVLYKNYGTSMAGLKAVGYDFDND 73
SNK + I+E ++QKLG+ E +V E ++ +++GY+F D
Sbjct: 122 SNKTYRLIDERLLQKLGLTEQQVREM----------ALFNARSLGYEFKQD 162
>sp|Q1ZXA5|ARLX_DICDI ADP-ribosylation factor-like protein DDB_G0292332 OS=Dictyostelium
discoideum GN=DDB_G0292332 PE=3 SV=1
Length = 186
Score = 30.4 bits (67), Expect = 9.9, Method: Compositional matrix adjust.
Identities = 19/71 (26%), Positives = 40/71 (56%), Gaps = 4/71 (5%)
Query: 29 NIEEYMIQKLGIEESEV--SEFNRVLYKNYGTSMAGLKAVGYDFDNDDYHSFVHGRLPYE 86
N+E +I+++ + ++ E NR+ Y++Y TS + ++ + FD+ D +S + Y+
Sbjct: 63 NVESIVIEQVKFDIWDIGGKETNRICYRHYLTS--EIDSIIFVFDSSDINSLEESKKEYQ 120
Query: 87 NLKPDPVLRNL 97
LK L+N+
Sbjct: 121 YLKNQISLKNV 131
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.320 0.137 0.403
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 90,543,332
Number of Sequences: 539616
Number of extensions: 3723062
Number of successful extensions: 8907
Number of sequences better than 100.0: 15
Number of HSP's better than 100.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 11
Number of HSP's that attempted gapping in prelim test: 8898
Number of HSP's gapped (non-prelim): 15
length of query: 238
length of database: 191,569,459
effective HSP length: 114
effective length of query: 124
effective length of database: 130,053,235
effective search space: 16126601140
effective search space used: 16126601140
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 59 (27.3 bits)