BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 035568
(518 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3G4D|A Chain A, Crystal Structure Of (+)-Delta-Cadinene Synthase From
Gossypium Arboreum And Evolutionary Divergence Of Metal
Binding Motifs For Catalysis
pdb|3G4D|B Chain B, Crystal Structure Of (+)-Delta-Cadinene Synthase From
Gossypium Arboreum And Evolutionary Divergence Of Metal
Binding Motifs For Catalysis
pdb|3G4F|A Chain A, Crystal Structure Of (+)- -Cadinene Synthase From
Gossypium Arboreum In Complex With 2-Fluorofarnesyl
Diphosphate
pdb|3G4F|B Chain B, Crystal Structure Of (+)- -Cadinene Synthase From
Gossypium Arboreum In Complex With 2-Fluorofarnesyl
Diphosphate
Length = 554
Score = 514 bits (1324), Expect = e-146, Method: Compositional matrix adjust.
Identities = 258/498 (51%), Positives = 337/498 (67%), Gaps = 18/498 (3%)
Query: 28 VDSLSRLKLIDAILRLGVGYQFERELEEALQNLYDAFSNNFYNIEDNDLYHVALRFRILR 87
+S +L ID++ RLGV Y F +E+E+ L+N+Y NN N +NDLY ++RFR+LR
Sbjct: 68 ANSTQKLAFIDSVQRLGVSYHFTKEIEDELENIY---HNN--NDAENDLYTTSIRFRLLR 122
Query: 88 QRGYKVSCDIXXXXXXXXXXXXESLKTDVSGMLSLYEAAHLVVHGEDILNEAIAFTTAHL 147
+ GY VSCD+ S+ +DV G+L LY+A++L VHGEDIL+EAI+FTT HL
Sbjct: 123 EHGYNVSCDVFNKFKDEQGNFKSSVTSDVRGLLELYQASYLRVHGEDILDEAISFTTHHL 182
Query: 148 QSSMAP-------QVIHALRQPLYKGLPRIEARFFISLYQEHEPLHNXXXXXXXXXDFNQ 200
++A +V HAL+Q + +GLPR+EAR ++S+YQ+ E HN DFN
Sbjct: 183 SLAVASLDHPLSEEVSHALKQSIRRGLPRVEARHYLSVYQDIES-HNKALLEFAKIDFNM 241
Query: 201 VQSLYKIELSEISRWWKDLDFARKLPFARDRVVECYFWIVGVYFEPQYSLARKLLTKVIS 260
+Q L++ ELSEI RWWKDLDF RKLP+ARDRVVE YFWI GVYFEPQYSL RK+LTKVI+
Sbjct: 242 LQFLHRKELSEICRWWKDLDFQRKLPYARDRVVEGYFWISGVYFEPQYSLGRKMLTKVIA 301
Query: 261 MTSIIDDIYDVYGIPEELDLFTAAIDRWDVSCIDQLPEYMQTFYVALLDLYKEIEEELAT 320
M SI+DD YD Y EEL +T AI+RWD+ CID++PEYM+ Y ALLD+Y+E+ + +A
Sbjct: 302 MASIVDDTYDSYATYEELIPYTNAIERWDIKCIDEIPEYMKPSYKALLDVYEEMVQLVAE 361
Query: 321 KGWSYRVHYAKEEMKILVHGYHDESKWFHNNYVPTMEEYMRVSLVTSGYSMLTAASFLGM 380
G YRV YAK M L Y E+KW NY P+ EE+ +L T GY+ML SF+GM
Sbjct: 362 HGRQYRVEYAKNAMIRLAQSYLVEAKWTLQNYKPSFEEFKANALPTCGYAMLAITSFVGM 421
Query: 381 DSVVTKEAFDWVSGKPKIIRASTIIGRLMDDIKSHKFEQERGHAASAIECYMKEKEREGV 440
+VT E F W + PKII+ASTII R MDD+ HKF+ R SAIECYM+E
Sbjct: 422 GDIVTPETFKWAASDPKIIQASTIICRFMDDVAEHKFKHRREDDCSAIECYMEE-----Y 476
Query: 441 SVTEQEVHEELYKKVGDAWKDINEECLMPTEVPRPLLMRVLNLSRVIDVIYKEGDGYTHV 500
VT QE ++ K V AWKD+N+E L PTE+P +L R LNL+RV+DV+Y+EGDGYT+V
Sbjct: 477 GVTAQEAYDVFNKHVESAWKDLNQEFLKPTEMPTEVLNRSLNLARVMDVLYREGDGYTYV 536
Query: 501 GQVMKDNIASVLIHPVAI 518
G+ K I S+LI P+A+
Sbjct: 537 GKAAKGGITSLLIEPIAL 554
>pdb|3LZ9|A Chain A, The Crystal Structure Of 5-Epi-Aristolochene Synthase M4
Mut Complexed With (2-Trans,6-Trans)-2-Fluorofarnesyl
Diphospha
pdb|3M00|A Chain A, Crystal Structure Of 5-Epi-Aristolochene Synthase M4
Mutant Complexed With (2-Cis,6-Trans)-2-Fluorofarnesyl
Diphosphate
Length = 550
Score = 429 bits (1103), Expect = e-120, Method: Compositional matrix adjust.
Identities = 229/503 (45%), Positives = 320/503 (63%), Gaps = 22/503 (4%)
Query: 25 GSGVDSLSRLKLIDAILRLGVGYQFERELEEALQNLYDAFSNNFYNIEDNDLYHVALRFR 84
+G+ L LID I RLG+ Y FE+E+++ L +Y+ SN NDL AL+FR
Sbjct: 61 ATGMKLADTLNLIDTIERLGISYHFEKEIDDILDQIYNQNSNC------NDLCTSALQFR 114
Query: 85 ILRQRGYKVSCDIXXXXXXXXXXXXESLKTDVSGMLSLYEAAHLVVHGEDILNEAIAFTT 144
+LRQ G+ +S +I ESL +DV G+L+LYEA+H+ H +DIL +A+AF+T
Sbjct: 115 LLRQHGFNISPEIFSKFQDENGKFKESLASDVLGLLNLYEASHVRTHADDILEDALAFST 174
Query: 145 AHLQSSMAP--------QVIHALRQPLYKGLPRIEARFFISLYQEHEPLHNXXXXXXXXX 196
HL+S+ AP QV HAL Q L+KG+PR+E RFFIS + E N
Sbjct: 175 IHLESA-APHLKSPLREQVTHALEQCLHKGVPRVETRFFISSIYDKEQSKNNVLLRFAKL 233
Query: 197 DFNQVQSLYKIELSEISRWWKDLDFARKLPFARDRVVECYFWIVGVYFEPQYSLARKLLT 256
DFN +Q L+K EL+++SRWWKDLDF LP+ARDRVVECYFW +GVYFEPQYS AR +L
Sbjct: 234 DFNLLQMLHKQELAQVSRWWKDLDFVTTLPYARDRVVECYFWTLGVYFEPQYSQARVMLV 293
Query: 257 KVISMTSIIDDIYDVYGIPEELDLFTAAIDRWDVSCIDQLPEYMQTFYVALLDLYKEIEE 316
K ISM SI+DD +D YG +EL+ +T AI RWD++ ID+LP+YM+ Y A+LDLYK+ E+
Sbjct: 294 KTISMISIVDDTFDAYGTVKELEAYTDAIQRWDINEIDRLPDYMKISYKAILDLYKDYEK 353
Query: 317 ELATKGWSYRVHYAKEEMKILVHGYHDESKWFHNNYVPTMEEYMRVSLVTSGYSMLTAAS 376
EL++ G S+ V +A E MK +V Y+ ES WF Y P + EY+ +L T+ Y +L S
Sbjct: 354 ELSSAGRSHIVCHAIERMKEIVRNYNVESTWFIEGYTPPVSEYLSNALATTTYYLLATTS 413
Query: 377 FLGMDSVVTKEAFDWVSGKPKIIRASTIIGRLMDDIKSHKFEQERGHAASAIECYMKEKE 436
+LGM S T++ F+W+S PKI+ AS II R++DD +++ E+ RG A+ IEC M++
Sbjct: 414 YLGMKS-ATEQDFEWLSKNPKILEASVIICRVIDDTATYEVEKSRGQIATGIECCMRD-- 470
Query: 437 REGVSVTEQEVHEELYKKVGDAWKDINEECLMPTEVPRPLLMRVLNLSRVIDVIYKEG-D 495
++ +E + AWKDINE L PT V L +LNL+R+I+V Y D
Sbjct: 471 ---YGISTKEAMAKFQNMAETAWKDINEGLLRPTPVSTEFLTPILNLARIIEVTYIHNLD 527
Query: 496 GYTHVGQVMKDNIASVLIHPVAI 518
GYTH +V+K +I ++L+ + I
Sbjct: 528 GYTHPEKVLKPHIINLLVDSIKI 550
>pdb|5EAU|A Chain A, 5-Epi-Aristolochene Synthase From Nicotiana Tabacum
Length = 548
Score = 428 bits (1100), Expect = e-120, Method: Compositional matrix adjust.
Identities = 228/503 (45%), Positives = 319/503 (63%), Gaps = 22/503 (4%)
Query: 25 GSGVDSLSRLKLIDAILRLGVGYQFERELEEALQNLYDAFSNNFYNIEDNDLYHVALRFR 84
+G+ L LID I RLG+ Y FE+E+++ L +Y+ SN NDL AL+FR
Sbjct: 59 ATGMKLADTLNLIDTIERLGISYHFEKEIDDILDQIYNQNSNC------NDLCTSALQFR 112
Query: 85 ILRQRGYKVSCDIXXXXXXXXXXXXESLKTDVSGMLSLYEAAHLVVHGEDILNEAIAFTT 144
+LRQ G+ +S +I ESL +DV G+L+LYEA+H+ H +DIL +A+AF+T
Sbjct: 113 LLRQHGFNISPEIFSKFQDENGKFKESLASDVLGLLNLYEASHVRTHADDILEDALAFST 172
Query: 145 AHLQSSMAP--------QVIHALRQPLYKGLPRIEARFFISLYQEHEPLHNXXXXXXXXX 196
HL+S+ AP QV HAL Q L+KG+PR+E RFFIS + E N
Sbjct: 173 IHLESA-APHLKSPLREQVTHALEQCLHKGVPRVETRFFISSIYDKEQSKNNVLLRFAKL 231
Query: 197 DFNQVQSLYKIELSEISRWWKDLDFARKLPFARDRVVECYFWIVGVYFEPQYSLARKLLT 256
DFN +Q L+K EL+++SRWWKDLDF LP+ARDRVVECYFW +GVYFEPQYS AR +L
Sbjct: 232 DFNLLQMLHKQELAQVSRWWKDLDFVTTLPYARDRVVECYFWALGVYFEPQYSQARVMLV 291
Query: 257 KVISMTSIIDDIYDVYGIPEELDLFTAAIDRWDVSCIDQLPEYMQTFYVALLDLYKEIEE 316
K ISM SI+DD +D YG +EL+ +T AI RWD++ ID+LP+YM+ Y A+LDLYK+ E+
Sbjct: 292 KTISMISIVDDTFDAYGTVKELEAYTDAIQRWDINEIDRLPDYMKISYKAILDLYKDYEK 351
Query: 317 ELATKGWSYRVHYAKEEMKILVHGYHDESKWFHNNYVPTMEEYMRVSLVTSGYSMLTAAS 376
EL++ G S+ V +A E MK +V Y+ ES WF Y P + EY+ +L T+ Y L S
Sbjct: 352 ELSSAGRSHIVCHAIERMKEVVRNYNVESTWFIEGYTPPVSEYLSNALATTTYYYLATTS 411
Query: 377 FLGMDSVVTKEAFDWVSGKPKIIRASTIIGRLMDDIKSHKFEQERGHAASAIECYMKEKE 436
+LGM S T++ F+W+S PKI+ AS II R++DD +++ E+ RG A+ IEC M++
Sbjct: 412 YLGMKS-ATEQDFEWLSKNPKILEASVIICRVIDDTATYEVEKSRGQIATGIECCMRD-- 468
Query: 437 REGVSVTEQEVHEELYKKVGDAWKDINEECLMPTEVPRPLLMRVLNLSRVIDVIYKEG-D 495
++ +E + AWKDINE L PT V L +LNL+R+++V Y D
Sbjct: 469 ---YGISTKEAMAKFQNMAETAWKDINEGLLRPTPVSTEFLTPILNLARIVEVTYIHNLD 525
Query: 496 GYTHVGQVMKDNIASVLIHPVAI 518
GYTH +V+K +I ++L+ + I
Sbjct: 526 GYTHPEKVLKPHIINLLVDSIKI 548
>pdb|3M01|A Chain A, The Crystal Structure Of 5-Epi-Aristolochene Synthase
Complexed With (2-Trans,6-Trans)-2-Fluorofarnesyl
Diphosphate
pdb|3M02|A Chain A, The Crystal Structure Of 5-Epi-Aristolochene Synthase
Complexed With (2-Cis,6-Trans)-2-Fluorofarnesyl
Diphosphate
Length = 550
Score = 428 bits (1100), Expect = e-120, Method: Compositional matrix adjust.
Identities = 228/503 (45%), Positives = 319/503 (63%), Gaps = 22/503 (4%)
Query: 25 GSGVDSLSRLKLIDAILRLGVGYQFERELEEALQNLYDAFSNNFYNIEDNDLYHVALRFR 84
+G+ L LID I RLG+ Y FE+E+++ L +Y+ SN NDL AL+FR
Sbjct: 61 ATGMKLADTLNLIDTIERLGISYHFEKEIDDILDQIYNQNSNC------NDLCTSALQFR 114
Query: 85 ILRQRGYKVSCDIXXXXXXXXXXXXESLKTDVSGMLSLYEAAHLVVHGEDILNEAIAFTT 144
+LRQ G+ +S +I ESL +DV G+L+LYEA+H+ H +DIL +A+AF+T
Sbjct: 115 LLRQHGFNISPEIFSKFQDENGKFKESLASDVLGLLNLYEASHVRTHADDILEDALAFST 174
Query: 145 AHLQSSMAP--------QVIHALRQPLYKGLPRIEARFFISLYQEHEPLHNXXXXXXXXX 196
HL+S+ AP QV HAL Q L+KG+PR+E RFFIS + E N
Sbjct: 175 IHLESA-APHLKSPLREQVTHALEQCLHKGVPRVETRFFISSIYDKEQSKNNVLLRFAKL 233
Query: 197 DFNQVQSLYKIELSEISRWWKDLDFARKLPFARDRVVECYFWIVGVYFEPQYSLARKLLT 256
DFN +Q L+K EL+++SRWWKDLDF LP+ARDRVVECYFW +GVYFEPQYS AR +L
Sbjct: 234 DFNLLQMLHKQELAQVSRWWKDLDFVTTLPYARDRVVECYFWALGVYFEPQYSQARVMLV 293
Query: 257 KVISMTSIIDDIYDVYGIPEELDLFTAAIDRWDVSCIDQLPEYMQTFYVALLDLYKEIEE 316
K ISM SI+DD +D YG +EL+ +T AI RWD++ ID+LP+YM+ Y A+LDLYK+ E+
Sbjct: 294 KTISMISIVDDTFDAYGTVKELEAYTDAIQRWDINEIDRLPDYMKISYKAILDLYKDYEK 353
Query: 317 ELATKGWSYRVHYAKEEMKILVHGYHDESKWFHNNYVPTMEEYMRVSLVTSGYSMLTAAS 376
EL++ G S+ V +A E MK +V Y+ ES WF Y P + EY+ +L T+ Y L S
Sbjct: 354 ELSSAGRSHIVCHAIERMKEVVRNYNVESTWFIEGYTPPVSEYLSNALATTTYYYLATTS 413
Query: 377 FLGMDSVVTKEAFDWVSGKPKIIRASTIIGRLMDDIKSHKFEQERGHAASAIECYMKEKE 436
+LGM S T++ F+W+S PKI+ AS II R++DD +++ E+ RG A+ IEC M++
Sbjct: 414 YLGMKS-ATEQDFEWLSKNPKILEASVIICRVIDDTATYEVEKSRGQIATGIECCMRD-- 470
Query: 437 REGVSVTEQEVHEELYKKVGDAWKDINEECLMPTEVPRPLLMRVLNLSRVIDVIYKEG-D 495
++ +E + AWKDINE L PT V L +LNL+R+++V Y D
Sbjct: 471 ---YGISTKEAMAKFQNMAETAWKDINEGLLRPTPVSTEFLTPILNLARIVEVTYIHNLD 527
Query: 496 GYTHVGQVMKDNIASVLIHPVAI 518
GYTH +V+K +I ++L+ + I
Sbjct: 528 GYTHPEKVLKPHIINLLVDSIKI 550
>pdb|4DI5|A Chain A, Co-Crystal Structure Of Wt 5-Epi-Aristolochene Synthase
From Nicotiana Tobaccum With Geraniline
Length = 535
Score = 427 bits (1099), Expect = e-120, Method: Compositional matrix adjust.
Identities = 228/503 (45%), Positives = 319/503 (63%), Gaps = 22/503 (4%)
Query: 25 GSGVDSLSRLKLIDAILRLGVGYQFERELEEALQNLYDAFSNNFYNIEDNDLYHVALRFR 84
+G+ L LID I RLG+ Y FE+E+++ L +Y+ SN NDL AL+FR
Sbjct: 46 ATGMKLADTLNLIDTIERLGISYHFEKEIDDILDQIYNQNSNC------NDLCTSALQFR 99
Query: 85 ILRQRGYKVSCDIXXXXXXXXXXXXESLKTDVSGMLSLYEAAHLVVHGEDILNEAIAFTT 144
+LRQ G+ +S +I ESL +DV G+L+LYEA+H+ H +DIL +A+AF+T
Sbjct: 100 LLRQHGFNISPEIFSKFQDENGKFKESLASDVLGLLNLYEASHVRTHADDILEDALAFST 159
Query: 145 AHLQSSMAP--------QVIHALRQPLYKGLPRIEARFFISLYQEHEPLHNXXXXXXXXX 196
HL+S+ AP QV HAL Q L+KG+PR+E RFFIS + E N
Sbjct: 160 IHLESA-APHLKSPLREQVTHALEQCLHKGVPRVETRFFISSIYDKEQSKNNVLLRFAKL 218
Query: 197 DFNQVQSLYKIELSEISRWWKDLDFARKLPFARDRVVECYFWIVGVYFEPQYSLARKLLT 256
DFN +Q L+K EL+++SRWWKDLDF LP+ARDRVVECYFW +GVYFEPQYS AR +L
Sbjct: 219 DFNLLQMLHKQELAQVSRWWKDLDFVTTLPYARDRVVECYFWALGVYFEPQYSQARVMLV 278
Query: 257 KVISMTSIIDDIYDVYGIPEELDLFTAAIDRWDVSCIDQLPEYMQTFYVALLDLYKEIEE 316
K ISM SI+DD +D YG +EL+ +T AI RWD++ ID+LP+YM+ Y A+LDLYK+ E+
Sbjct: 279 KTISMISIVDDTFDAYGTVKELEAYTDAIQRWDINEIDRLPDYMKISYKAILDLYKDYEK 338
Query: 317 ELATKGWSYRVHYAKEEMKILVHGYHDESKWFHNNYVPTMEEYMRVSLVTSGYSMLTAAS 376
EL++ G S+ V +A E MK +V Y+ ES WF Y P + EY+ +L T+ Y L S
Sbjct: 339 ELSSAGRSHIVCHAIERMKEVVRNYNVESTWFIEGYTPPVSEYLSNALATTTYYYLATTS 398
Query: 377 FLGMDSVVTKEAFDWVSGKPKIIRASTIIGRLMDDIKSHKFEQERGHAASAIECYMKEKE 436
+LGM S T++ F+W+S PKI+ AS II R++DD +++ E+ RG A+ IEC M++
Sbjct: 399 YLGMKS-ATEQDFEWLSKNPKILEASVIICRVIDDTATYEVEKSRGQIATGIECCMRD-- 455
Query: 437 REGVSVTEQEVHEELYKKVGDAWKDINEECLMPTEVPRPLLMRVLNLSRVIDVIYKEG-D 495
++ +E + AWKDINE L PT V L +LNL+R+++V Y D
Sbjct: 456 ---YGISTKEAMAKFQNMAETAWKDINEGLLRPTPVSTEFLTPILNLARIVEVTYIHNLD 512
Query: 496 GYTHVGQVMKDNIASVLIHPVAI 518
GYTH +V+K +I ++L+ + I
Sbjct: 513 GYTHPEKVLKPHIINLLVDSIKI 535
>pdb|5EAS|A Chain A, 5-Epi-Aristolochene Synthase From Nicotiana Tabacum
Length = 548
Score = 427 bits (1099), Expect = e-120, Method: Compositional matrix adjust.
Identities = 229/503 (45%), Positives = 318/503 (63%), Gaps = 22/503 (4%)
Query: 25 GSGVDSLSRLKLIDAILRLGVGYQFERELEEALQNLYDAFSNNFYNIEDNDLYHVALRFR 84
+G L LID I RLG+ Y FE+E++E L +Y+ SN NDL AL+FR
Sbjct: 59 ATGRKLADTLNLIDIIERLGISYHFEKEIDEILDQIYNQNSNC------NDLCTSALQFR 112
Query: 85 ILRQRGYKVSCDIXXXXXXXXXXXXESLKTDVSGMLSLYEAAHLVVHGEDILNEAIAFTT 144
+LRQ G+ +S +I ESL +DV G+L+LYEA+H+ H +DIL +A+AF+T
Sbjct: 113 LLRQHGFNISPEIFSKFQDENGKFKESLASDVLGLLNLYEASHVRTHADDILEDALAFST 172
Query: 145 AHLQSSMAP--------QVIHALRQPLYKGLPRIEARFFISLYQEHEPLHNXXXXXXXXX 196
HL+S+ AP QV HAL Q L+KG+PR+E RFFIS + E N
Sbjct: 173 IHLESA-APHLKSPLREQVTHALEQCLHKGVPRVETRFFISSIYDKEQSKNNVLLRFAKL 231
Query: 197 DFNQVQSLYKIELSEISRWWKDLDFARKLPFARDRVVECYFWIVGVYFEPQYSLARKLLT 256
DFN +Q L+K EL+++SRWWKDLDF LP+ARDRVVECYFW +GVYFEPQYS AR +L
Sbjct: 232 DFNLLQMLHKQELAQVSRWWKDLDFVTTLPYARDRVVECYFWALGVYFEPQYSQARVMLV 291
Query: 257 KVISMTSIIDDIYDVYGIPEELDLFTAAIDRWDVSCIDQLPEYMQTFYVALLDLYKEIEE 316
K ISM SI+DD +D YG +EL+ +T AI RWD++ ID+LP+YM+ Y A+LDLYK+ E+
Sbjct: 292 KTISMISIVDDTFDAYGTVKELEAYTDAIQRWDINEIDRLPDYMKISYKAILDLYKDYEK 351
Query: 317 ELATKGWSYRVHYAKEEMKILVHGYHDESKWFHNNYVPTMEEYMRVSLVTSGYSMLTAAS 376
EL++ G S+ V +A E MK +V Y+ ES WF Y P + EY+ +L T+ Y L S
Sbjct: 352 ELSSAGRSHIVCHAIERMKEVVRNYNVESTWFIEGYTPPVSEYLSNALATTTYYYLATTS 411
Query: 377 FLGMDSVVTKEAFDWVSGKPKIIRASTIIGRLMDDIKSHKFEQERGHAASAIECYMKEKE 436
+LGM S T++ F+W+S PKI+ AS II R++DD +++ E+ RG A+ IEC M++
Sbjct: 412 YLGMKS-ATEQDFEWLSKNPKILEASVIICRVIDDTATYEVEKSRGQIATGIECCMRD-- 468
Query: 437 REGVSVTEQEVHEELYKKVGDAWKDINEECLMPTEVPRPLLMRVLNLSRVIDVIYKEG-D 495
++ +E + AWKDINE L PT V L +LNL+R+++V Y D
Sbjct: 469 ---YGISTKEAMAKFQNMAETAWKDINEGLLRPTPVSTEFLTPILNLARIVEVTYIHNLD 525
Query: 496 GYTHVGQVMKDNIASVLIHPVAI 518
GYTH +V+K +I ++L+ + I
Sbjct: 526 GYTHPEKVLKPHIINLLVDSIKI 548
>pdb|5EAT|A Chain A, 5-Epi-Aristolochene Synthase From Nicotiana Tabacum With
Substrate Analog Farnesyl Hydroxyphosphonate
Length = 548
Score = 427 bits (1098), Expect = e-120, Method: Compositional matrix adjust.
Identities = 229/503 (45%), Positives = 318/503 (63%), Gaps = 22/503 (4%)
Query: 25 GSGVDSLSRLKLIDAILRLGVGYQFERELEEALQNLYDAFSNNFYNIEDNDLYHVALRFR 84
+G L LID I RLG+ Y FE+E++E L +Y+ SN NDL AL+FR
Sbjct: 59 ATGRKLADTLNLIDIIERLGISYHFEKEIDEILDQIYNQNSNC------NDLCTSALQFR 112
Query: 85 ILRQRGYKVSCDIXXXXXXXXXXXXESLKTDVSGMLSLYEAAHLVVHGEDILNEAIAFTT 144
+LRQ G+ +S +I ESL +DV G+L+LYEA+H+ H +DIL +A+AF+T
Sbjct: 113 LLRQHGFNISPEIFSKFQDENGKFKESLASDVLGLLNLYEASHVRTHADDILEDALAFST 172
Query: 145 AHLQSSMAP--------QVIHALRQPLYKGLPRIEARFFISLYQEHEPLHNXXXXXXXXX 196
HL+S+ AP QV HAL Q L+KG+PR+E RFFIS + E N
Sbjct: 173 IHLESA-APHLKSPLREQVTHALEQCLHKGVPRVETRFFISSIYDKEQSKNNVLLRFAKL 231
Query: 197 DFNQVQSLYKIELSEISRWWKDLDFARKLPFARDRVVECYFWIVGVYFEPQYSLARKLLT 256
DFN +Q L+K EL+++SRWWKDLDF LP+ARDRVVECYFW +GVYFEPQYS AR +L
Sbjct: 232 DFNLLQMLHKQELAQVSRWWKDLDFVTTLPYARDRVVECYFWALGVYFEPQYSQARVMLV 291
Query: 257 KVISMTSIIDDIYDVYGIPEELDLFTAAIDRWDVSCIDQLPEYMQTFYVALLDLYKEIEE 316
K ISM SI+DD +D YG +EL+ +T AI RWD++ ID+LP+YM+ Y A+LDLYK+ E+
Sbjct: 292 KTISMISIVDDTFDAYGTVKELEAYTDAIQRWDINEIDRLPDYMKISYKAILDLYKDYEK 351
Query: 317 ELATKGWSYRVHYAKEEMKILVHGYHDESKWFHNNYVPTMEEYMRVSLVTSGYSMLTAAS 376
EL++ G S+ V +A E MK +V Y+ ES WF Y P + EY+ +L T+ Y L S
Sbjct: 352 ELSSAGRSHIVCHAIERMKEVVRNYNVESTWFIEGYTPPVSEYLSNALATTTYYYLATTS 411
Query: 377 FLGMDSVVTKEAFDWVSGKPKIIRASTIIGRLMDDIKSHKFEQERGHAASAIECYMKEKE 436
+LGM S T++ F+W+S PKI+ AS II R++DD +++ E+ RG A+ IEC M++
Sbjct: 412 YLGMKS-ATEQDFEWLSKNPKILEASVIICRVIDDTATYEVEKSRGQIATGIECCMRD-- 468
Query: 437 REGVSVTEQEVHEELYKKVGDAWKDINEECLMPTEVPRPLLMRVLNLSRVIDVIYKEG-D 495
++ +E + AWKDINE L PT V L +LNL+R+++V Y D
Sbjct: 469 ---YGISTKEAMAKFQNMAETAWKDINEGLLRPTPVSTEFLTPILNLARIVEVTYIHNLD 525
Query: 496 GYTHVGQVMKDNIASVLIHPVAI 518
GYTH +V+K +I ++L+ + I
Sbjct: 526 GYTHPEEVLKPHIINLLVDSIKI 548
>pdb|1HXC|A Chain A, Crystal Structure Of Teas C440w
Length = 548
Score = 427 bits (1097), Expect = e-120, Method: Compositional matrix adjust.
Identities = 228/503 (45%), Positives = 319/503 (63%), Gaps = 22/503 (4%)
Query: 25 GSGVDSLSRLKLIDAILRLGVGYQFERELEEALQNLYDAFSNNFYNIEDNDLYHVALRFR 84
+G+ L LID I RLG+ Y FE+E+++ L +Y+ SN NDL AL+FR
Sbjct: 59 ATGMKLADTLNLIDTIERLGISYHFEKEIDDILDQIYNQNSNC------NDLCTSALQFR 112
Query: 85 ILRQRGYKVSCDIXXXXXXXXXXXXESLKTDVSGMLSLYEAAHLVVHGEDILNEAIAFTT 144
+LRQ G+ +S +I ESL +DV G+L+LYEA+H+ H +DIL +A+AF+T
Sbjct: 113 LLRQHGFNISPEIFSKFQDENGKFKESLASDVLGLLNLYEASHVRTHADDILEDALAFST 172
Query: 145 AHLQSSMAP--------QVIHALRQPLYKGLPRIEARFFISLYQEHEPLHNXXXXXXXXX 196
HL+S+ AP QV HAL Q L+KG+PR+E RFFIS + E N
Sbjct: 173 IHLESA-APHLKSPLREQVTHALEQCLHKGVPRVETRFFISSIYDKEQSKNNVLLRFAKL 231
Query: 197 DFNQVQSLYKIELSEISRWWKDLDFARKLPFARDRVVECYFWIVGVYFEPQYSLARKLLT 256
DFN +Q L+K EL+++SRWWKDLDF LP+ARDRVVECYFW +GVYFEPQYS AR +L
Sbjct: 232 DFNLLQMLHKQELAQVSRWWKDLDFVTTLPYARDRVVECYFWALGVYFEPQYSQARVMLV 291
Query: 257 KVISMTSIIDDIYDVYGIPEELDLFTAAIDRWDVSCIDQLPEYMQTFYVALLDLYKEIEE 316
K ISM SI+DD +D YG +EL+ +T AI RWD++ ID+LP+YM+ Y A+LDLYK+ E+
Sbjct: 292 KTISMISIVDDTFDAYGTVKELEAYTDAIQRWDINEIDRLPDYMKISYKAILDLYKDYEK 351
Query: 317 ELATKGWSYRVHYAKEEMKILVHGYHDESKWFHNNYVPTMEEYMRVSLVTSGYSMLTAAS 376
EL++ G S+ V +A E MK +V Y+ ES WF Y P + EY+ +L T+ Y L S
Sbjct: 352 ELSSAGRSHIVCHAIERMKEVVRNYNVESTWFIEGYTPPVSEYLSNALATTTYYYLATTS 411
Query: 377 FLGMDSVVTKEAFDWVSGKPKIIRASTIIGRLMDDIKSHKFEQERGHAASAIECYMKEKE 436
+LGM S T++ F+W+S PKI+ AS II R++DD +++ E+ RG A+ IEC M++
Sbjct: 412 YLGMKS-ATEQDFEWLSKNPKILEASVIIWRVIDDTATYEVEKSRGQIATGIECCMRD-- 468
Query: 437 REGVSVTEQEVHEELYKKVGDAWKDINEECLMPTEVPRPLLMRVLNLSRVIDVIYKEG-D 495
++ +E + AWKDINE L PT V L +LNL+R+++V Y D
Sbjct: 469 ---YGISTKEAMAKFQNMAETAWKDINEGLLRPTPVSTEFLTPILNLARIVEVTYIHNLD 525
Query: 496 GYTHVGQVMKDNIASVLIHPVAI 518
GYTH +V+K +I ++L+ + I
Sbjct: 526 GYTHPEEVLKPHIINLLVDSIKI 548
>pdb|1HX9|A Chain A, Crystal Structure Of Teas W273s Form 1
pdb|1HXA|A Chain A, Crystal Structure Of Teas W273s Form 2
Length = 548
Score = 423 bits (1087), Expect = e-118, Method: Compositional matrix adjust.
Identities = 227/503 (45%), Positives = 318/503 (63%), Gaps = 22/503 (4%)
Query: 25 GSGVDSLSRLKLIDAILRLGVGYQFERELEEALQNLYDAFSNNFYNIEDNDLYHVALRFR 84
+G+ L LID I RLG+ Y FE+E+++ L +Y+ SN NDL AL+FR
Sbjct: 59 ATGMKLADTLNLIDTIERLGISYHFEKEIDDILDQIYNQNSNC------NDLCTSALQFR 112
Query: 85 ILRQRGYKVSCDIXXXXXXXXXXXXESLKTDVSGMLSLYEAAHLVVHGEDILNEAIAFTT 144
+LRQ G+ +S +I ESL +DV G+L+LYEA+H+ H +DIL +A+AF+T
Sbjct: 113 LLRQHGFNISPEIFSKFQDENGKFKESLASDVLGLLNLYEASHVRTHADDILEDALAFST 172
Query: 145 AHLQSSMAP--------QVIHALRQPLYKGLPRIEARFFISLYQEHEPLHNXXXXXXXXX 196
HL+S+ AP QV HAL Q L+KG+PR+E RFFIS + E N
Sbjct: 173 IHLESA-APHLKSPLREQVTHALEQCLHKGVPRVETRFFISSIYDKEQSKNNVLLRFAKL 231
Query: 197 DFNQVQSLYKIELSEISRWWKDLDFARKLPFARDRVVECYFWIVGVYFEPQYSLARKLLT 256
DFN +Q L+K EL+++SRWWKDLDF LP+ARDRVVECYF +GVYFEPQYS AR +L
Sbjct: 232 DFNLLQMLHKQELAQVSRWWKDLDFVTTLPYARDRVVECYFSALGVYFEPQYSQARVMLV 291
Query: 257 KVISMTSIIDDIYDVYGIPEELDLFTAAIDRWDVSCIDQLPEYMQTFYVALLDLYKEIEE 316
K ISM SI+DD +D YG +EL+ +T AI RWD++ ID+LP+YM+ Y A+LDLYK+ E+
Sbjct: 292 KTISMISIVDDTFDAYGTVKELEAYTDAIQRWDINEIDRLPDYMKISYKAILDLYKDYEK 351
Query: 317 ELATKGWSYRVHYAKEEMKILVHGYHDESKWFHNNYVPTMEEYMRVSLVTSGYSMLTAAS 376
EL++ G S+ V +A E MK +V Y+ ES WF Y P + EY+ +L T+ Y L S
Sbjct: 352 ELSSAGRSHIVCHAIERMKEVVRNYNVESTWFIEGYTPPVSEYLSNALATTTYYYLATTS 411
Query: 377 FLGMDSVVTKEAFDWVSGKPKIIRASTIIGRLMDDIKSHKFEQERGHAASAIECYMKEKE 436
+LGM S T++ F+W+S PKI+ AS II R++DD +++ E+ RG A+ IEC M++
Sbjct: 412 YLGMKS-ATEQDFEWLSKNPKILEASVIICRVIDDTATYEVEKSRGQIATGIECCMRD-- 468
Query: 437 REGVSVTEQEVHEELYKKVGDAWKDINEECLMPTEVPRPLLMRVLNLSRVIDVIYKEG-D 495
++ +E + AWKDINE L PT V L +LNL+R+++V Y D
Sbjct: 469 ---YGISTKEAMAKFQNMAETAWKDINEGLLRPTPVSTEFLTPILNLARIVEVTYIHNLD 525
Query: 496 GYTHVGQVMKDNIASVLIHPVAI 518
GYTH +V+K +I ++L+ + I
Sbjct: 526 GYTHPEEVLKPHIINLLVDSIKI 548
>pdb|1HXG|A Chain A, Crystal Structure Of Teas W273sC440W
Length = 548
Score = 422 bits (1085), Expect = e-118, Method: Compositional matrix adjust.
Identities = 227/503 (45%), Positives = 318/503 (63%), Gaps = 22/503 (4%)
Query: 25 GSGVDSLSRLKLIDAILRLGVGYQFERELEEALQNLYDAFSNNFYNIEDNDLYHVALRFR 84
+G+ L LID I RLG+ Y FE+E+++ L +Y+ SN NDL AL+FR
Sbjct: 59 ATGMKLADTLNLIDTIERLGISYHFEKEIDDILDQIYNQNSNC------NDLCTSALQFR 112
Query: 85 ILRQRGYKVSCDIXXXXXXXXXXXXESLKTDVSGMLSLYEAAHLVVHGEDILNEAIAFTT 144
+LRQ G+ +S +I ESL +DV G+L+LYEA+H+ H +DIL +A+AF+T
Sbjct: 113 LLRQHGFNISPEIFSKFQDENGKFKESLASDVLGLLNLYEASHVRTHADDILEDALAFST 172
Query: 145 AHLQSSMAP--------QVIHALRQPLYKGLPRIEARFFISLYQEHEPLHNXXXXXXXXX 196
HL+S+ AP QV HAL Q L+KG+PR+E RFFIS + E N
Sbjct: 173 IHLESA-APHLKSPLREQVTHALEQCLHKGVPRVETRFFISSIYDKEQSKNNVLLRFAKL 231
Query: 197 DFNQVQSLYKIELSEISRWWKDLDFARKLPFARDRVVECYFWIVGVYFEPQYSLARKLLT 256
DFN +Q L+K EL+++SRWWKDLDF LP+ARDRVVECYF +GVYFEPQYS AR +L
Sbjct: 232 DFNLLQMLHKQELAQVSRWWKDLDFVTTLPYARDRVVECYFSALGVYFEPQYSQARVMLV 291
Query: 257 KVISMTSIIDDIYDVYGIPEELDLFTAAIDRWDVSCIDQLPEYMQTFYVALLDLYKEIEE 316
K ISM SI+DD +D YG +EL+ +T AI RWD++ ID+LP+YM+ Y A+LDLYK+ E+
Sbjct: 292 KTISMISIVDDTFDAYGTVKELEAYTDAIQRWDINEIDRLPDYMKISYKAILDLYKDYEK 351
Query: 317 ELATKGWSYRVHYAKEEMKILVHGYHDESKWFHNNYVPTMEEYMRVSLVTSGYSMLTAAS 376
EL++ G S+ V +A E MK +V Y+ ES WF Y P + EY+ +L T+ Y L S
Sbjct: 352 ELSSAGRSHIVCHAIERMKEVVRNYNVESTWFIEGYTPPVSEYLSNALATTTYYYLATTS 411
Query: 377 FLGMDSVVTKEAFDWVSGKPKIIRASTIIGRLMDDIKSHKFEQERGHAASAIECYMKEKE 436
+LGM S T++ F+W+S PKI+ AS II R++DD +++ E+ RG A+ IEC M++
Sbjct: 412 YLGMKS-ATEQDFEWLSKNPKILEASVIIWRVIDDTATYEVEKSRGQIATGIECCMRD-- 468
Query: 437 REGVSVTEQEVHEELYKKVGDAWKDINEECLMPTEVPRPLLMRVLNLSRVIDVIYKEG-D 495
++ +E + AWKDINE L PT V L +LNL+R+++V Y D
Sbjct: 469 ---YGISTKEAMAKFQNMAETAWKDINEGLLRPTPVSTEFLTPILNLARIVEVTYIHNLD 525
Query: 496 GYTHVGQVMKDNIASVLIHPVAI 518
GYTH +V+K +I ++L+ + I
Sbjct: 526 GYTHPEEVLKPHIINLLVDSIKI 548
>pdb|3N0F|A Chain A, Crystal Structure Of Isoprene Synthase From Grey Poplar
Leaves (Populus X Canescens)
pdb|3N0F|B Chain B, Crystal Structure Of Isoprene Synthase From Grey Poplar
Leaves (Populus X Canescens)
pdb|3N0G|A Chain A, Crystal Structure Of Isoprene Synthase From Grey Poplar
Leaves (Populus X Canescens) In Complex With Three Mg2+
Ions And Dimethylallyl-S-Thiolodiphosphate
pdb|3N0G|B Chain B, Crystal Structure Of Isoprene Synthase From Grey Poplar
Leaves (Populus X Canescens) In Complex With Three Mg2+
Ions And Dimethylallyl-S-Thiolodiphosphate
Length = 555
Score = 303 bits (776), Expect = 2e-82, Method: Compositional matrix adjust.
Identities = 172/495 (34%), Positives = 271/495 (54%), Gaps = 18/495 (3%)
Query: 31 LSRLKLIDAILRLGVGYQFERELEEALQNLYDAFSNNFYNIEDNDLYHVALRFRILRQRG 90
L+ L+LID + RLG+GY+FE ++ AL S F + L+ AL FR+LRQ G
Sbjct: 65 LTLLELIDNVQRLGLGYRFESDIRRALDRFVS--SGGFDGVTKTSLHATALSFRLLRQHG 122
Query: 91 YKVSCDIXXXXXXXXXXXXESLKTDVSGMLSLYEAAHLVVHGEDILNEAIAFTTAHLQ-- 148
++VS + E+LK D +LSLYEA+ L + GE+IL+EA F +HL+
Sbjct: 123 FEVSQEAFSGFKDQNGNFLENLKEDTKAILSLYEASFLALEGENILDEARVFAISHLKEL 182
Query: 149 ------SSMAPQVIHALRQPLYKGLPRIEARFFISLYQEHEPLHNXXXXXXXXXDFNQVQ 202
+A QV HAL PL++ R+EA + I Y++ E N D+N +Q
Sbjct: 183 SEEKIGKELAEQVNHALELPLHRRTQRLEAVWSIEAYRKKEDA-NQVLLELAILDYNMIQ 241
Query: 203 SLYKIELSEISRWWKDLDFARKLPFARDRVVECYFWIVGVYFEPQYSLARKLLTKVISMT 262
S+Y+ +L E SRWW+ + A KL FARDR++E ++W VGV FEPQYS R + K+ S
Sbjct: 242 SVYQRDLRETSRWWRRVGLATKLHFARDRLIESFYWAVGVAFEPQYSDCRNSVAKMFSFV 301
Query: 263 SIIDDIYDVYGIPEELDLFTAAIDRWDVSCIDQLPEYMQTFYVALLDLYKEIE-EELATK 321
+IIDDIYDVYG +EL+LFT A++RWDV+ I+ LP+YM+ ++AL + EI + L K
Sbjct: 302 TIIDDIYDVYGTLDELELFTDAVERWDVNAINDLPDYMKLCFLALYNTINEIAYDNLKDK 361
Query: 322 GWSYRVHYAKEEMKILVHGYHDESKWFHNNYVPTMEEYMRVSLVTSGYSMLTAASFLGMD 381
G + + Y + L + + E+KW +N PT ++Y + +S + ++ +
Sbjct: 362 GENI-LPYLTKAWADLCNAFLQEAKWLYNKSTPTFDDYFGNAWKSSSGPLQLIFAYFAVV 420
Query: 382 SVVTKEAFDWVSGKPKIIRASTIIGRLMDDIKSHKFEQERGHAASAIECYMKEKEREGVS 441
+ KE + + II + I RL +D+ S E RG A+++ CYM+ K
Sbjct: 421 QNIKKEEIENLQKYHDIISRPSHIFRLCNDLASASAEIARGETANSVSCYMRTK-----G 475
Query: 442 VTEQEVHEELYKKVGDAWKDINEECLMPTEVPRPLLMRVLNLSRVIDVIYKEGDGYTHVG 501
++E+ E + + + WK +N+E L + +P + +NL+R Y GD +T
Sbjct: 476 ISEELATESVMNLIDETWKKMNKEKLGGSLFAKPFVETAINLARQSHCTYHNGDAHTSPD 535
Query: 502 QVMKDNIASVLIHPV 516
++ + + SV+ P+
Sbjct: 536 ELTRKRVLSVITEPI 550
>pdb|2J5C|A Chain A, Rational Conversion Of Substrate And Product Specificity
In A Monoterpene Synthase. Structural Insights Into The
Molecular Basis Of Rapid Evolution.
pdb|2J5C|B Chain B, Rational Conversion Of Substrate And Product Specificity
In A Monoterpene Synthase. Structural Insights Into The
Molecular Basis Of Rapid Evolution
Length = 569
Score = 282 bits (722), Expect = 3e-76, Method: Compositional matrix adjust.
Identities = 174/498 (34%), Positives = 264/498 (53%), Gaps = 23/498 (4%)
Query: 28 VDSLSRLKLIDAILRLGVGYQFERELEEALQNLYDAFSNNFYNIEDNDLYHVALRFRILR 87
VDS+ RL+LID + RLG+ FERE+ E L + Y ++NN I++ DLY ALRFR+LR
Sbjct: 81 VDSIRRLELIDDLRRLGISCHFEREIVEILNSKY--YTNN--EIDERDLYSTALRFRLLR 136
Query: 88 QRGYKVSCDIXXXXXXXXXXXXE-SLKTDVSGMLSLYEAAHLVVHGEDILNEAIAFTTAH 146
Q + VS ++ + SL D G+L LYEA+ L GE+ L A F T
Sbjct: 137 QYDFSVSQEVFDCFKNAKGTDFKPSLVDDTRGLLQLYEASFLSAQGEETLRLARDFATKF 196
Query: 147 LQS--------SMAPQVIHALRQPLYKGLPRIEARFFISLYQEHEPLHNXXXXXXXXXDF 198
LQ ++ + AL P + + AR FI Y+ P N DF
Sbjct: 197 LQKRVLVDKDINLLSSIERALELPTHWRVQMPNARSFIDAYKRR-PDMNPTVLELAKLDF 255
Query: 199 NQVQSLYKIELSEISRWWKDLDFARKLPFARDRVVECYFWIVGVYFEPQYSLARKLLTKV 258
N VQ+ ++ EL E SRWW +LPF RDR+VECY+W GV Q+ R +LTK+
Sbjct: 256 NMVQAQFQQELKEASRWWNSTGLVHELPFVRDRIVECYYWTTGVVERRQHGYERIMLTKI 315
Query: 259 ISMTSIIDDIYDVYGIPEELDLFTAAIDRWDVSCIDQLPEYMQTFYVALLDLYKEIE-EE 317
++ + IDD++D+YG EEL LFT AI RWD+ + QLP YMQ Y+AL + E+ +
Sbjct: 316 NALVTTIDDVFDIYGTLEELQLFTTAIQRWDIESMKQLPPYMQICYLALFNFVNEMAYDT 375
Query: 318 LATKGWSYRVHYAKEEMKILVHGYHDESKWFHNNYVPTMEEYMRVSLVTSGYSMLTAASF 377
L KG+ Y ++ L+ Y E+KW++ + P++EEYM+ S ++ G + + F
Sbjct: 376 LRDKGFD-STPYLRKVWVGLIESYLIEAKWYYKGHKPSLEEYMKNSWISIGGIPILSHLF 434
Query: 378 LGMDSVVTKEAFDWVSGKPKIIRASTIIGRLMDDIKSHKFEQERGHAASAIECYMKEKER 437
+ + +EA + + I+RAS I RL DD+ + E ERG +++CYM EK
Sbjct: 435 FRLTDSIEEEAAESMHKYHDIVRASCTILRLADDMGTSLDEVERGDVPKSVQCYMNEK-- 492
Query: 438 EGVSVTEQEVHEELYKKVGDAWKDINEECLMPTEVPRPLLMRVLNLSRVIDVIYK-EGDG 496
+ +E+E E + + WK +N+E +M + + + NL+R+ IY+ E DG
Sbjct: 493 ---NASEEEAREHVRSLIDQTWKMMNKE-MMTSSFSKYFVEVSANLARMAQWIYQHESDG 548
Query: 497 YTHVGQVMKDNIASVLIH 514
+ ++ + +L H
Sbjct: 549 FGMQHSLVNKMLRDLLFH 566
>pdb|1N1B|A Chain A, Crystal Structure Of (+)-bornyl Diphosphate Synthase From
Sage
pdb|1N1B|B Chain B, Crystal Structure Of (+)-bornyl Diphosphate Synthase From
Sage
pdb|1N1Z|A Chain A, (+)-Bornyl Diphosphate Synthase: Complex With Mg And
Pyrophosphate
pdb|1N1Z|B Chain B, (+)-Bornyl Diphosphate Synthase: Complex With Mg And
Pyrophosphate
pdb|1N20|A Chain A, (+)-bornyl Diphosphate Synthase: Complex With Mg And
3-aza- 2,3-dihydrogeranyl Diphosphate
pdb|1N20|B Chain B, (+)-bornyl Diphosphate Synthase: Complex With Mg And
3-aza- 2,3-dihydrogeranyl Diphosphate
pdb|1N21|A Chain A, (+)-Bornyl Diphosphate Synthase: Cocrystal With Mg And 3-
Aza-2,3-Dihydrogeranyl Diphosphate
pdb|1N22|A Chain A, (+)-Bornyl Diphosphate Synthase: Complex With Mg,
Pyrophosphate, And (4r)-7-Aza-7,8-Dihydrolimonene
pdb|1N22|B Chain B, (+)-Bornyl Diphosphate Synthase: Complex With Mg,
Pyrophosphate, And (4r)-7-Aza-7,8-Dihydrolimonene
pdb|1N23|A Chain A, (+)-Bornyl Diphosphate Synthase: Complex With Mg,
Pyrophosphate, And (1r,4s)-2-Azabornane
pdb|1N23|B Chain B, (+)-Bornyl Diphosphate Synthase: Complex With Mg,
Pyrophosphate, And (1r,4s)-2-Azabornane
pdb|1N24|A Chain A, (+)-Bornyl Diphosphate Synthase: Complex With Mg And
Product
pdb|1N24|B Chain B, (+)-Bornyl Diphosphate Synthase: Complex With Mg And
Product
Length = 549
Score = 268 bits (684), Expect = 7e-72, Method: Compositional matrix adjust.
Identities = 164/506 (32%), Positives = 258/506 (50%), Gaps = 24/506 (4%)
Query: 28 VDSLSRLKLIDAILRLGVGYQFERELEEALQNLYD---AFSNNFYNIEDNDLYHVALRFR 84
++ + +L+LI + LG+ F+ E++E L +Y+ F NN +E DLY AL FR
Sbjct: 52 MEPVQQLELIHDLKYLGLSDFFQDEIKEILGVIYNEHKCFHNN--EVEKMDLYFTALGFR 109
Query: 85 ILRQRGYKVSCDIXXXXXXXXXXXXE-SLKTDVSGMLSLYEAAHLVVHGEDILNEAIAFT 143
+LRQ G+ +S D+ + SL D GML LYEA+ L+ GED L A F
Sbjct: 110 LLRQHGFNISQDVFNCFKNEKGIDFKASLAQDTKGMLQLYEASFLLRKGEDTLELAREFA 169
Query: 144 TAHLQSSMAPQ-----------VIHALRQPLYKGLPRIEARFFISLYQEHEPLHNXXXXX 192
T LQ + + H+L PL+ + +EAR+FI Y P N
Sbjct: 170 TKCLQKKLDEGGNEIDENLLLWIRHSLDLPLHWRIQSVEARWFIDAYAR-RPDMNPLIFE 228
Query: 193 XXXXDFNQVQSLYKIELSEISRWWKDLDFARKLPFARDRVVECYFWIVGVYFEPQYSLAR 252
+FN +Q+ ++ EL ++SRWW L F KLPF RDR+VE +FW VG++ Q+ R
Sbjct: 229 LAKLNFNIIQATHQQELKDLSRWWSRLCFPEKLPFVRDRLVESFFWAVGMFEPHQHGYQR 288
Query: 253 KLLTKVISMTSIIDDIYDVYGIPEELDLFTAAIDRWDVSCIDQLPEYMQTFYVALLDLYK 312
K+ +I + ++IDDIYDVYG +EL+LFT RWD I +LP YMQ Y + +
Sbjct: 289 KMAATIIVLATVIDDIYDVYGTLDELELFTDTFKRWDTESITRLPYYMQLCYWGVHNYIS 348
Query: 313 EIEEELATKGWSYRVHYAKEEMKILVHGYHDESKWFHNNYVPTMEEYMRVSLVTSGYSML 372
+ ++ + + + Y ++ + LV Y E+KW+H+ Y P+++EY+ ++ ++ +
Sbjct: 349 DAAYDILKEHGFFCLQYLRKSVVDLVEAYFHEAKWYHSGYTPSLDEYLNIAKISVASPAI 408
Query: 373 TAASFLGMDSVVTKEA-FDWVSGKPKIIRASTIIGRLMDDIKSHKFEQERGHAASAIECY 431
+ ++ + A D + I+ + II RL DD+ + FE RG I+CY
Sbjct: 409 ISPTYFTFANASHDTAVIDSLYQYHDILCLAGIILRLPDDLGTSYFELARGDVPKTIQCY 468
Query: 432 MKEKEREGVSVTEQEVHEELYKKVGDAWKDINEECLMPTEVPRPLLMRVLNLSRVIDVIY 491
MKE + +E+E E + + +AWKD+N P ++ N+ RV IY
Sbjct: 469 MKE-----TNASEEEAVEHVKFLIREAWKDMNTAIAAGYPFPDGMVAGAANIGRVAQFIY 523
Query: 492 KEGDGYTHVGQVMKDNIASVLIHPVA 517
GDG+ ++IA +L P A
Sbjct: 524 LHGDGFGVQHSKTYEHIAGLLFEPYA 549
>pdb|2ONG|A Chain A, Crystal Structure Of Of Limonene Synthase With 2-
Fluorogeranyl Diphosphate (Fgpp).
pdb|2ONG|B Chain B, Crystal Structure Of Of Limonene Synthase With 2-
Fluorogeranyl Diphosphate (Fgpp).
pdb|2ONH|A Chain A, Crystal Structure Of Of Limonene Synthase With 2-
Fluorolinalyl Diphosphate(flpp)
pdb|2ONH|B Chain B, Crystal Structure Of Of Limonene Synthase With 2-
Fluorolinalyl Diphosphate(flpp)
Length = 543
Score = 266 bits (679), Expect = 3e-71, Method: Compositional matrix adjust.
Identities = 160/503 (31%), Positives = 263/503 (52%), Gaps = 20/503 (3%)
Query: 28 VDSLSRLKLIDAILRLGVGYQFERELEEALQNLY--DAFSNNFYNIEDNDLYHVALRFRI 85
D + +L+LID + R+G+ F+ E +E L ++Y + N + E+ DLY +L FR+
Sbjct: 48 TDQIRQLELIDDLQRMGLSDHFQNEFKEILSSIYLDHHYYKNPFPKEERDLYSTSLAFRL 107
Query: 86 LRQRGYKVSCDIXXXXXXXXXXXXESLKTDVSGMLSLYEAAHLVVHGEDILNEAIAFTTA 145
LR+ G++V+ ++ ESL D G+L LYEA+ L+ GE L A F T
Sbjct: 108 LREHGFQVAQEVFDSFKNEEGEFKESLSDDTRGLLQLYEASFLLTEGETTLESAREFATK 167
Query: 146 HLQ---------SSMAPQVIHALRQPLYKGLPRIEARFFISLYQEHEPLHNXXXXXXXXX 196
L+ + ++ ++L PL+ + R A +I Y++ P N
Sbjct: 168 FLEEKVNEGGVDGDLLTRIAYSLDIPLHWRIKRPNAPVWIEWYRKR-PDMNPVVLELAIL 226
Query: 197 DFNQVQSLYKIELSEISRWWKDLDFARKLPFARDRVVECYFWIVGVYFEPQYSLARKLLT 256
D N VQ+ ++ EL E RWW++ F KLPFARDR+VECYFW G+ Q++ AR ++
Sbjct: 227 DLNIVQAQFQEELKESFRWWRNTGFVEKLPFARDRLVECYFWNTGIIEPRQHASARIMMG 286
Query: 257 KVISMTSIIDDIYDVYGIPEELDLFTAAIDRWDVSCIDQLPEYMQTFYVALLDLYKEIEE 316
KV ++ ++IDDIYDVYG EEL+ FT I RWD++ IDQLP+YMQ ++AL + +
Sbjct: 287 KVNALITVIDDIYDVYGTLEELEQFTDLIRRWDINSIDQLPDYMQLCFLALNNFVDDTSY 346
Query: 317 ELATKGWSYRVHYAKEEMKILVHGYHDESKWFHNNYVPTMEEYMRVSLVT-SGYSMLTAA 375
++ + + Y ++ L Y E++WF+ + P++EEY+ S + SG MLT
Sbjct: 347 DVMKEKGVNVIPYLRQSWVDLADKYMVEARWFYGGHKPSLEEYLENSWQSISGPCMLTHI 406
Query: 376 SFLGMDSVVTKEAFDWVSGKPKIIRASTIIGRLMDDIKSHKFEQERGHAASAIECYMKEK 435
F DS TKE D + ++R S+ + RL DD+ + E RG +++CYM +
Sbjct: 407 FFRVTDS-FTKETVDSLYKYHDLVRWSSFVLRLADDLGTSVEEVSRGDVPKSLQCYMSD- 464
Query: 436 EREGVSVTEQEVHEELYKKVGDAWKDINEECLMP-TEVPRPLLMRVLNLSRVIDVIYKEG 494
+ +E E + + + + WK +N E + + + + ++L R+ ++Y G
Sbjct: 465 ----YNASEAEARKHVKWLIAEVWKKMNAERVSKDSPFGKDFIGCAVDLGRMAQLMYHNG 520
Query: 495 DGYTHVGQVMKDNIASVLIHPVA 517
DG+ ++ + L P A
Sbjct: 521 DGHGTQHPIIHQQMTRTLFEPFA 543
>pdb|3SAE|A Chain A, Structure Of A Three-Domain Sesquiterpene Synthase: A
Prospective Target For Advanced Biofuels Production
pdb|3SDQ|A Chain A, Structure Of A Three-Domain Sesquiterpene Synthase: A
Prospective Target For Advanced Biofuels Production
pdb|3SDR|A Chain A, Structure Of A Three-Domain Sesquiterpene Synthase: A
Prospective Target For Advanced Biofuels Production
pdb|3SDT|A Chain A, Structure Of A Three-Domain Sesquiterpene Synthase: A
Prospective Target For Advanced Biofuels Production
pdb|3SDU|A Chain A, Structure Of A Three-Domain Sesquiterpene Synthase: A
Prospective Target For Advanced Biofuels Production
pdb|3SDV|A Chain A, Structure Of A Three-Domain Sesquiterpene Synthase: A
Prospective Target For Advanced Biofuels Production
Length = 817
Score = 261 bits (666), Expect = 1e-69, Method: Compositional matrix adjust.
Identities = 166/527 (31%), Positives = 277/527 (52%), Gaps = 41/527 (7%)
Query: 28 VDSLSRLKLIDAILRLGVGYQFERELEEALQNLYDAFSNNFYNIED----NDLYHVALRF 83
VD L RL ++D I+RLG+ FE+E++EAL +Y ++ DL AL F
Sbjct: 296 VDLLERLLIVDNIVRLGIYRHFEKEIKEALDYVYRHWNERGIGWGRLNPIADLETTALGF 355
Query: 84 RILRQRGYKVSCDIXXXXXXXXXXXXES---LKTDVSGMLSLYEAAHLVVHGEDILNEAI 140
R+LR Y VS I S DV+ ML+LY A+ L GE+IL+EA
Sbjct: 356 RLLRLHRYNVSPAIFDNFKDANGKFICSTGQFNKDVASMLNLYRASQLAFPGENILDEAK 415
Query: 141 AFTTAHL---------------QSSMAPQVIHALRQPLYKGLPRIEARFFISLYQEHEP- 184
+F T +L + +++ ++ +AL+ + +PR+EA+ + +Y+
Sbjct: 416 SFATKYLREALEKSETSSAWNNKQNLSQEIKYALKTSWHASVPRVEAKRYCQVYRPDYAR 475
Query: 185 ----------LHNXXXXXXXXXDFNQVQSLYKIELSEISRWWKDLDFARKLPFARDRVVE 234
++N DFN +QS+++ E+ ++ W++D FAR+R +E
Sbjct: 476 IAKCVYKLPYVNNEKFLELGKLDFNIIQSIHQEEMKNVTSWFRDSGLPL-FTFARERPLE 534
Query: 235 CYFWIVGVYFEPQYSLARKLLTKVISMTSIIDDIYDVYGIPEELDLFTAAIDRWDVSCID 294
YF + +EPQY+ R L TKV + +++DD+YD YG +EL LFT A+ RWD+S +
Sbjct: 535 FYFLVAAGTYEPQYAKCRFLFTKVACLQTVLDDMYDTYGTLDELKLFTEAVRRWDLSFTE 594
Query: 295 QLPEYMQTFYVALLDLYKEIEEELATKGWSYRVHYAKEEMKILVHGYHDESKWFHNNYVP 354
LP+YM+ Y D+ E+ E + V + ++ + + GY++E++W YVP
Sbjct: 595 NLPDYMKLCYQIYYDIVHEVAWEAEKEQGRELVSFFRKGWEDYLLGYYEEAEWLAAEYVP 654
Query: 355 TMEEYMRVSLVTSGYSMLTAASFLGMDS-VVTKEAFDWV--SGKPKIIRASTIIGRLMDD 411
T++EY++ + + G +L + L MD ++++EA + V G+ + +++I RL DD
Sbjct: 655 TLDEYIKNGITSIGQRILLLSGVLIMDGQLLSQEALEKVDYPGRRVLTELNSLISRLADD 714
Query: 412 IKSHKFEQERGHAASAIECYMKEKEREGVSVTEQEVHEELYKKVGDAWKDINEECLMPTE 471
K++K E+ RG AS+IECYMK+ TE+E + +Y + A K++ E L P +
Sbjct: 715 TKTYKAEKARGELASSIECYMKDHPE----CTEEEALDHIYSILEPAVKELTREFLKPDD 770
Query: 472 VPRPLLMRVLNLSRVIDVIYKEGDGYTHVGQVMKDNIASVLIHPVAI 518
VP + +RV VI+K+GDG+ +KD+I LI P+ +
Sbjct: 771 VPFACKKMLFEETRVTMVIFKDGDGFGVSKLEVKDHIKECLIEPLPL 817
>pdb|3S9V|A Chain A, Abietadiene Synthase From Abies Grandis
pdb|3S9V|B Chain B, Abietadiene Synthase From Abies Grandis
pdb|3S9V|C Chain C, Abietadiene Synthase From Abies Grandis
pdb|3S9V|D Chain D, Abietadiene Synthase From Abies Grandis
Length = 785
Score = 237 bits (604), Expect = 1e-62, Method: Compositional matrix adjust.
Identities = 152/529 (28%), Positives = 267/529 (50%), Gaps = 50/529 (9%)
Query: 28 VDSLSRLKLIDAILRLGVGYQFERELEEALQNLYD---------AFSNNFYNIEDNDLYH 78
+D RL +D + RLG+ F+ E++EAL +Y A N +I+D
Sbjct: 268 LDLFERLWAVDTVERLGIDRHFKEEIKEALDYVYSHWDERGIGWARENPVPDIDD----- 322
Query: 79 VALRFRILRQRGYKVSCDIXXXXXXXXXXXXESL---KTDVSGMLSLYEAAHLVVHGEDI 135
A+ RILR GY VS D+ L + V+ ML++ +H+ GE I
Sbjct: 323 TAMGLRILRLHGYNVSSDVLKTFRDENGEFFCFLGQTQRGVTDMLNVNRCSHVSFPGETI 382
Query: 136 LNEAIAFTTAHLQSSMAP---------------QVIHALRQPLYKGLPRIEARFFISLYQ 180
+ EA T +L++++ +V +AL+ P +K +PR+EAR +I Y
Sbjct: 383 MEEAKLCTERYLRNALENVDAFDKWAFKKNIRGEVEYALKYPWHKSMPRLEARSYIENYG 442
Query: 181 EHEP-----------LHNXXXXXXXXXDFNQVQSLYKIELSEISRWWKDLDFARKLPFAR 229
+ + N DFN+VQS+++ EL ++ RWWK F L F R
Sbjct: 443 PDDVWLGKTVYMMPYISNEKYLELAKLDFNKVQSIHQTELQDLRRWWKSSGFT-DLNFTR 501
Query: 230 DRVVECYFWIVGVYFEPQYSLARKLLTKVISMTSIIDDIYDVYGIPEELDLFTAAIDRWD 289
+RV E YF FEP++S R++ TK + T I+DD+YD +G ++L LFT ++ RWD
Sbjct: 502 ERVTEIYFSPASFIFEPEFSKCREVYTKTSNFTVILDDLYDAHGSLDDLKLFTESVKRWD 561
Query: 290 VSCIDQLPEYMQTFYVALLDLYKEIEEELATKGWSYRVHYAKEEMKILVHGYHDESKWFH 349
+S +DQ+P+ M+ +V + + +I +E + + Y + K+ + Y E++W
Sbjct: 562 LSLVDQMPQQMKICFVGFYNTFNDIAKEGRERQGRDVLGYIQNVWKVQLEAYTKEAEWSE 621
Query: 350 NNYVPTMEEYMRVSLVTSGYSMLTAASFLGMDSVVTKEAFDWVSGKPKIIRASTIIGRLM 409
YVP+ EY+ + V+ + S L V+T E + + + ++ + GRL+
Sbjct: 622 AKYVPSFNEYIENASVSIALGTVVLISALFTGEVLTDEVLSKIDRESRFLQLMGLTGRLV 681
Query: 410 DDIKSHKFEQERGHAASAIECYMKEKEREGVSVTEQEVHEELYKKVGDAWKDINEECLMP 469
+D K+++ E+ +G ASAI+CYMK+ + ++E+E + +Y + +A +++N E +
Sbjct: 682 NDTKTYQAERGQGEVASAIQCYMKDHPK----ISEEEALQHVYSVMENALEELNRE-FVN 736
Query: 470 TEVPRPLLMRVLNLSRVIDVIYKEGDGYTHVGQV-MKDNIASVLIHPVA 517
++P V +R++ + Y +GDG T + +K+++ + L PVA
Sbjct: 737 NKIPDIYKRLVFETARIMQLFYMQGDGLTLSHDMEIKEHVKNCLFQPVA 785
>pdb|3P5P|A Chain A, Crystal Structure Of Taxadiene Synthase From Pacific Yew
(Taxus Brevifolia) In Complex With Mg2+ And
13-Aza-13,14-Dihydrocopalyl Diphosphate
pdb|3P5R|A Chain A, Crystal Structure Of Taxadiene Synthase From Pacific Yew
(Taxus Brevifolia) In Complex With Mg2+ And
2-Fluorogeranylgeranyl Diphosphate
pdb|3P5R|B Chain B, Crystal Structure Of Taxadiene Synthase From Pacific Yew
(Taxus Brevifolia) In Complex With Mg2+ And
2-Fluorogeranylgeranyl Diphosphate
Length = 764
Score = 215 bits (547), Expect = 5e-56, Method: Compositional matrix adjust.
Identities = 144/521 (27%), Positives = 244/521 (46%), Gaps = 36/521 (6%)
Query: 27 GVDSLSRLKLIDAILRLGVGYQFERELEEALQNLYDAFSNNFYNIEDN----DLYHVALR 82
+D L RL L+D I LG+G F++E++ AL +Y +S + DL AL
Sbjct: 243 SIDLLERLSLVDNIEHLGIGRHFKQEIKGALDYVYRHWSERGIGWGRDSLVPDLNTTALG 302
Query: 83 FRILRQRGYKVSCDIXXXXXXXXXXXXES---LKTDVSGMLSLYEAAHLVVHGEDILNEA 139
R LR GY VS D+ S ++ +++L+ A+ L E +++A
Sbjct: 303 LRTLRMHGYNVSSDVLNNFKDENGRFFSSAGQTHVELRSVVNLFRASDLAFPDERAMDDA 362
Query: 140 IAFTTAHLQSSMAPQVI----------HALRQPLYKGLPRIEARFFISLYQEH------- 182
F +L+ ++A ++ + + P + +PR+EAR +I Y ++
Sbjct: 363 RKFAEPYLREALATKISTNTKLFKEIEYVVEYPWHMSIPRLEARSYIDSYDDNYVWQRKT 422
Query: 183 ----EPLHNXXXXXXXXXDFNQVQSLYKIELSEISRWWKDLDFARKLPFARDRVVECYFW 238
L N DFN VQSL++ EL ++RWWK+ A + F R RV E YF
Sbjct: 423 LYRMPSLSNSKCLELAKLDFNIVQSLHQEELKLLTRWWKESGMA-DINFTRHRVAEVYF- 480
Query: 239 IVGVYFEPQYSLARKLLTKVISMTSIIDDIYDVYGIPEELDLFTAAIDRWDVSCIDQLPE 298
FEP+YS R TK+ + + DD+ D++ +EL FT + RWD S + ++PE
Sbjct: 481 -SSATFEPEYSATRIAFTKIGCLQVLFDDMADIFATLDELKSFTEGVKRWDTSLLHEIPE 539
Query: 299 YMQTFYVALLDLYKEIEEELATKGWSYRVHYAKEEMKILVHGYHDESKWFHNNYVPTMEE 358
MQT + L +E+ ++ + + ++ ++ + Y E +W Y+PT EE
Sbjct: 540 CMQTCFKVWFKLMEEVNNDVVKVQGRDMLAHIRKPWELYFNCYVQEREWLEAGYIPTFEE 599
Query: 359 YMRVSLVTSGYSMLTAASFLGMDSVVTKEAFDWVSGKPKIIRASTIIGRLMDDIKSHKFE 418
Y++ ++ G T L M +V + + V + ++ RL +D K+++ E
Sbjct: 600 YLKTYAISVGLGPCTLQPILLMGELVKDDVVEKVHYPSNMFELVSLSWRLTNDTKTYQAE 659
Query: 419 QERGHAASAIECYMKEKEREGVSVTEQEVHEELYKKVGDAWKDINEECLMPT-EVPRPLL 477
+ RG AS I CYMK+ TE++ + + + V A K+ + E P+ ++P
Sbjct: 660 KARGQQASGIACYMKDNP----GATEEDAIKHICRVVDRALKEASFEYFKPSNDIPMGCK 715
Query: 478 MRVLNLSRVIDVIYKEGDGYTHVGQVMKDNIASVLIHPVAI 518
+ NL + + YK DGY + +KD I V I P+ +
Sbjct: 716 SFIFNLRLCVQIFYKFIDGYGIANEEIKDYIRKVYIDPIQV 756
>pdb|3PYA|A Chain A, Crystal Structure Of Ent-Copalyl Diphosphate Synthase From
Arabidopsis Thaliana In Complex With
(S)-15-Aza-14,15-Dihydrogeranylgeranyl Thiolodiphosphate
pdb|3PYB|A Chain A, Crystal Structure Of Ent-Copalyl Diphosphate Synthase From
Arabidopsis Thaliana In Complex With
13-Aza-13,14-Dihydrocopalyl Diphosphate
pdb|3PYB|B Chain B, Crystal Structure Of Ent-Copalyl Diphosphate Synthase From
Arabidopsis Thaliana In Complex With
13-Aza-13,14-Dihydrocopalyl Diphosphate
pdb|3PYB|C Chain C, Crystal Structure Of Ent-Copalyl Diphosphate Synthase From
Arabidopsis Thaliana In Complex With
13-Aza-13,14-Dihydrocopalyl Diphosphate
Length = 727
Score = 82.4 bits (202), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 65/265 (24%), Positives = 116/265 (43%), Gaps = 38/265 (14%)
Query: 28 VDSLSRLKLIDAILRLGVGYQFERELEEALQNLYDAFSNN------FYNIEDNDLYHVAL 81
VD + ++D + RLG+ FE E++E L ++ +++N +++D D A+
Sbjct: 243 VDLFEHIWIVDRLQRLGISRYFEEEIKECLDYVHRYWTDNGICWARCSHVQDID--DTAM 300
Query: 82 RFRILRQRGYKVSCDIXXXXXXXXXXXXESLKTD--VSGMLSLYEAAHLVVHGEDILNEA 139
FR+LRQ GY+VS D+ +++ V+GM +LY A+ L E+IL A
Sbjct: 301 AFRLLRQHGYQVSADVFKNFEKEGEFFCFVGQSNQAVTGMFNLYRASQLAFPREEILKNA 360
Query: 140 IAFTTAHL---------------QSSMAPQVIHALRQPLYKGLPRIEARFFISLYQEHEP 184
F+ +L + ++ AL P Y LPR+E RF+I Y
Sbjct: 361 KEFSYNYLLEKREREELIDKWIIMKDLPGEIGFALEIPWYASLPRVETRFYIDQYGGEND 420
Query: 185 ------------LHNXXXXXXXXXDFNQVQSLYKIELSEISRWWKDLDFARKLPFARDRV 232
++N D+N Q+ +++E +W+++ + + R +
Sbjct: 421 VWIGKTLYRMPYVNNNGYLELAKQDYNNCQAQHQLEWDIFQKWYEENRLS-EWGVRRSEL 479
Query: 233 VECYFWIVGVYFEPQYSLARKLLTK 257
+ECY+ FE + S R + K
Sbjct: 480 LECYYLAAATIFESERSHERMVWAK 504
>pdb|3UGV|A Chain A, Crystal Structure Of An Enolase From Alpha Pretobacterium
Bal199 (Efi Target Efi-501650) With Bound Mg
pdb|3UGV|B Chain B, Crystal Structure Of An Enolase From Alpha Pretobacterium
Bal199 (Efi Target Efi-501650) With Bound Mg
pdb|3UGV|C Chain C, Crystal Structure Of An Enolase From Alpha Pretobacterium
Bal199 (Efi Target Efi-501650) With Bound Mg
pdb|3UGV|D Chain D, Crystal Structure Of An Enolase From Alpha Pretobacterium
Bal199 (Efi Target Efi-501650) With Bound Mg
pdb|3UGV|E Chain E, Crystal Structure Of An Enolase From Alpha Pretobacterium
Bal199 (Efi Target Efi-501650) With Bound Mg
pdb|3UGV|F Chain F, Crystal Structure Of An Enolase From Alpha Pretobacterium
Bal199 (Efi Target Efi-501650) With Bound Mg
pdb|3UGV|G Chain G, Crystal Structure Of An Enolase From Alpha Pretobacterium
Bal199 (Efi Target Efi-501650) With Bound Mg
pdb|3UGV|H Chain H, Crystal Structure Of An Enolase From Alpha Pretobacterium
Bal199 (Efi Target Efi-501650) With Bound Mg
Length = 390
Score = 30.8 bits (68), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 24/74 (32%), Positives = 32/74 (43%), Gaps = 2/74 (2%)
Query: 313 EIEEELATKGWSYRVHYAKEEMKILVHGYHDESKWFHNNYVPTMEEY--MRVSLVTSGYS 370
+IE E G +Y Y + MK LV HD S + E Y R SL GY+
Sbjct: 62 DIETEEGVPGRAYLEPYVPKAMKYLVPALHDMSDMLAGQPLAPAEIYDKTRKSLHFVGYA 121
Query: 371 MLTAASFLGMDSVV 384
L+ + G+D V
Sbjct: 122 GLSMIAASGVDMAV 135
>pdb|2CZ9|A Chain A, Crystal Structure Of Galactokinase From Pyrococcus
Horikoshi
pdb|2DEI|A Chain A, Crystal Structure Of Galaktokinase From Pyrococcus
Horikoshii With Amp-Pnp And Galactose
pdb|2DEJ|A Chain A, Crystal Structure Of Galaktokinase From Pyrococcus
Horikoshii With Amp-Pn And Galactose
Length = 350
Score = 29.3 bits (64), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 16/52 (30%), Positives = 28/52 (53%)
Query: 305 VALLDLYKEIEEELATKGWSYRVHYAKEEMKILVHGYHDESKWFHNNYVPTM 356
V++L Y + ELA+ ++ R H A+E +KIL G E + + +P +
Sbjct: 180 VSILVFYTGVRRELASSEYAERKHIAEESLKILGKGSSKEVREGELSKLPPL 231
>pdb|1G59|A Chain A, Glutamyl-Trna Synthetase Complexed With Trna(Glu).
pdb|1G59|C Chain C, Glutamyl-Trna Synthetase Complexed With Trna(Glu).
pdb|1GLN|A Chain A, Architectures Of Class-Defining And Specific Domains Of
Glutamyl-Trna Synthetase
Length = 468
Score = 28.9 bits (63), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 18/28 (64%)
Query: 308 LDLYKEIEEELATKGWSYRVHYAKEEMK 335
L LY++ EEL +GW+YR EE++
Sbjct: 86 LPLYQKYAEELLKRGWAYRAFETPEELE 113
>pdb|1J09|A Chain A, Crystal Structure Of Thermus Thermophilus Glutamyl-Trna
Synthetase Complexed With Atp And Glu
pdb|1N75|A Chain A, Crystal Structure Of Thermus Thermophilus Glutamyl-Trna
Synthetase Complexed With Atp.
pdb|1N77|A Chain A, Crystal Structure Of Thermus Thermophilus Glutamyl-Trna
Synthetase Complexed With Trna(Glu) And Atp.
pdb|1N77|B Chain B, Crystal Structure Of Thermus Thermophilus Glutamyl-Trna
Synthetase Complexed With Trna(Glu) And Atp.
pdb|1N78|A Chain A, Crystal Structure Of Thermus Thermophilus Glutamyl-Trna
Synthetase Complexed With Trna(Glu) And Glutamol-Amp.
pdb|1N78|B Chain B, Crystal Structure Of Thermus Thermophilus Glutamyl-Trna
Synthetase Complexed With Trna(Glu) And Glutamol-Amp.
pdb|2CUZ|A Chain A, Glutamyl-Trna Synthetase From Thermus Thermophilus In
Complex With L-Glutamate
pdb|2CV0|A Chain A, Glutamyl-Trna Synthetase From Thermus Thermophilus In
Complex With Trna(Glu) And L-Glutamate
pdb|2CV0|B Chain B, Glutamyl-Trna Synthetase From Thermus Thermophilus In
Complex With Trna(Glu) And L-Glutamate
pdb|2CV1|A Chain A, Glutamyl-Trna Synthetase From Thermus Thermophilus In
Complex With Trna(Glu), Atp, And An Analog Of
L-Glutamate: A Quaternary Complex
pdb|2CV1|B Chain B, Glutamyl-Trna Synthetase From Thermus Thermophilus In
Complex With Trna(Glu), Atp, And An Analog Of
L-Glutamate: A Quaternary Complex
pdb|2CV2|A Chain A, Glutamyl-Trna Synthetase From Thermus Thermophilus In
Complex With Trna(Glu) And An Enzyme Inhibitor, Glu-Ams
pdb|2CV2|B Chain B, Glutamyl-Trna Synthetase From Thermus Thermophilus In
Complex With Trna(Glu) And An Enzyme Inhibitor, Glu-Ams
pdb|2DXI|A Chain A, 2.2 A Crystal Structure Of Glutamyl-Trna Synthetase From
Thermus Thermophilus Complexed With Trna(Glu), Atp, And
L- Glutamol
pdb|2DXI|B Chain B, 2.2 A Crystal Structure Of Glutamyl-Trna Synthetase From
Thermus Thermophilus Complexed With Trna(Glu), Atp, And
L- Glutamol
Length = 468
Score = 28.9 bits (63), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 18/28 (64%)
Query: 308 LDLYKEIEEELATKGWSYRVHYAKEEMK 335
L LY++ EEL +GW+YR EE++
Sbjct: 86 LPLYQKYAEELLKRGWAYRAFETPEELE 113
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.137 0.407
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 14,418,861
Number of Sequences: 62578
Number of extensions: 578248
Number of successful extensions: 1518
Number of sequences better than 100.0: 27
Number of HSP's better than 100.0 without gapping: 22
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 1406
Number of HSP's gapped (non-prelim): 27
length of query: 518
length of database: 14,973,337
effective HSP length: 103
effective length of query: 415
effective length of database: 8,527,803
effective search space: 3539038245
effective search space used: 3539038245
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 54 (25.4 bits)