Query 035568
Match_columns 518
No_of_seqs 212 out of 892
Neff 6.8
Searched_HMMs 29240
Date Mon Mar 25 06:19:45 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/035568.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/035568hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3g4d_A (+)-delta-cadinene synt 100.0 1E-159 4E-164 1291.7 48.8 501 7-518 47-554 (554)
2 3m00_A Aristolochene synthase; 100.0 7E-159 2E-163 1285.0 48.5 499 7-518 43-550 (550)
3 3n0f_A Isoprene synthase; terp 100.0 2E-158 6E-163 1284.1 47.8 502 7-517 41-551 (555)
4 2ong_A 4S-limonene synthase; m 100.0 2E-152 5E-157 1243.9 49.8 503 7-517 28-543 (543)
5 1n1b_A (+)-bornyl diphosphate 100.0 2E-152 7E-157 1242.4 44.8 504 7-517 32-549 (549)
6 2j5c_A 1,8-cineole synthase; t 100.0 1E-151 3E-156 1240.6 44.7 498 7-517 61-569 (569)
7 3sdr_A Alpha-bisabolene syntha 100.0 3E-144 9E-149 1218.2 46.1 486 27-518 295-817 (817)
8 3p5p_A Taxadiene synthase; cla 100.0 7E-144 2E-148 1207.9 47.1 483 27-518 243-756 (764)
9 3s9v_A Abietadiene synthase, c 100.0 2E-143 5E-148 1207.9 46.6 483 27-517 267-785 (785)
10 3pya_A ENT-copalyl diphosphate 100.0 1E-108 3E-113 915.1 35.4 447 8-517 219-720 (727)
11 1ps1_A Pentalenene synthase; a 100.0 9.8E-52 3.4E-56 425.7 15.6 251 202-466 15-270 (337)
12 1di1_A Aristolochene synthase; 100.0 2.9E-49 9.9E-54 400.4 18.1 242 204-466 13-264 (300)
13 3bny_A Aristolochene synthase; 100.0 5.2E-48 1.8E-52 395.1 16.6 247 199-466 22-278 (320)
14 3kb9_A EPI-isozizaene synthase 100.0 5.6E-46 1.9E-50 390.2 16.7 245 210-466 64-312 (382)
15 3v1v_A 2-MIB synthase, 2-methy 100.0 4.8E-33 1.6E-37 295.5 18.1 243 210-466 133-390 (433)
16 1yyq_A Trichodiene synthase; t 99.7 1.1E-17 3.8E-22 174.2 15.6 244 210-485 33-293 (374)
17 3ipi_A Geranyltranstransferase 86.0 3.1 0.00011 41.4 9.7 143 326-486 128-278 (295)
18 3lmd_A Geranylgeranyl pyrophos 83.3 7.2 0.00025 39.8 11.3 103 325-435 160-275 (360)
19 3rmg_A Octaprenyl-diphosphate 78.3 33 0.0011 34.4 14.1 86 325-416 133-220 (334)
20 3oyr_A Trans-isoprenyl diphosp 72.1 56 0.0019 32.9 13.9 104 325-435 151-267 (345)
21 3acx_A Dehydrosqualene synthas 70.6 81 0.0028 30.6 17.9 180 250-464 38-231 (293)
22 3mzv_A Decaprenyl diphosphate 68.1 86 0.0029 31.4 14.3 104 325-435 139-255 (341)
23 4hd1_A Squalene synthase HPNC; 63.3 1.1E+02 0.0039 29.7 16.9 105 252-378 41-147 (294)
24 1wy0_A Geranylgeranyl pyrophos 62.3 53 0.0018 32.9 11.4 103 326-435 138-253 (342)
25 3pko_A Geranylgeranyl pyrophos 62.2 85 0.0029 31.4 12.8 102 326-434 144-258 (334)
26 3apz_A Geranyl diphosphate syn 61.1 74 0.0025 31.9 12.2 87 325-417 153-241 (348)
27 4dhd_A Polyprenyl synthetase; 59.1 54 0.0019 33.2 10.8 105 326-435 133-261 (358)
28 2ftz_A Geranyltranstransferase 53.2 81 0.0028 30.8 10.6 124 326-464 135-264 (284)
29 1wmw_A Geranylgeranyl diphosph 46.4 2.3E+02 0.0078 28.0 13.8 102 326-435 131-246 (330)
30 1pd3_A Nonstructural protein N 43.7 25 0.00084 25.5 3.6 33 10-43 16-48 (58)
31 3nf2_A Putative polyprenyl syn 42.4 1.1E+02 0.0039 30.7 10.0 103 326-435 144-259 (352)
32 1rtr_A Geranyltranstransferase 40.8 55 0.0019 32.3 7.2 112 335-464 148-271 (301)
33 3m0g_A Farnesyl diphosphate sy 38.3 57 0.0019 32.1 6.8 111 335-464 147-269 (297)
34 3llw_A Geranyltranstransferase 36.2 81 0.0028 31.3 7.6 114 334-464 158-281 (311)
35 3ts7_A Geranyltranstransferase 34.8 1.2E+02 0.004 30.3 8.6 113 335-463 158-281 (324)
36 1uby_A FPS, farnesyl diphospha 34.2 1.5E+02 0.0052 29.9 9.5 105 326-435 170-291 (367)
37 2qis_A Farnesyl pyrophosphate 33.7 1.9E+02 0.0064 29.3 10.1 105 326-435 177-298 (374)
38 3lsn_A Geranyltranstransferase 33.3 1.8E+02 0.0062 28.6 9.6 112 337-464 154-276 (304)
39 3p8l_A Geranyltranstransferase 33.2 1.1E+02 0.0038 30.1 8.0 112 335-464 156-279 (302)
40 3p8r_A Geranyltranstransferase 33.0 68 0.0023 31.6 6.4 113 335-464 158-282 (302)
41 3pde_A Farnesyl-diphosphate sy 31.7 1.3E+02 0.0043 29.8 8.2 110 336-464 156-278 (309)
42 2h8o_A Geranyltranstransferase 30.8 94 0.0032 31.1 7.1 112 335-464 192-315 (335)
43 2q80_A Geranylgeranyl pyrophos 29.6 2.2E+02 0.0074 27.9 9.4 84 325-416 111-195 (301)
44 3lom_A Geranyltranstransferase 28.5 1.6E+02 0.0054 29.1 8.3 114 335-463 158-282 (313)
45 4f62_A Geranyltranstransferase 27.2 2.6E+02 0.0088 27.7 9.5 113 336-464 152-275 (317)
46 3npk_A Geranyltranstransferase 26.4 2.7E+02 0.0093 27.1 9.5 114 334-464 144-266 (291)
47 1yhl_A Farnesyl pyrophosphate 26.1 1.6E+02 0.0056 29.5 8.0 105 326-435 152-284 (362)
48 2her_A Fragment, farnesyl pyro 25.5 3E+02 0.01 27.8 9.8 104 326-435 169-284 (368)
49 1rqj_A Geranyltranstransferase 25.1 2E+02 0.0067 28.1 8.2 114 335-464 152-276 (299)
50 1v4e_A Octoprenyl-diphosphate 24.5 2.2E+02 0.0075 27.8 8.4 100 325-435 127-238 (299)
51 2azj_A Geranylgeranyl pyrophos 24.4 2.8E+02 0.0097 26.9 9.2 117 326-464 136-258 (289)
52 3aqb_B Component B of hexapren 24.3 1.5E+02 0.0052 29.2 7.3 89 325-417 130-218 (325)
53 2e8v_A Geranylgeranyl pyrophos 23.9 1.2E+02 0.0041 30.3 6.4 103 326-435 132-249 (340)
54 2ee7_A Sperm flagellar protein 23.3 41 0.0014 29.0 2.4 28 203-230 11-39 (127)
55 3uca_A Geranyltranstransferase 21.9 2.3E+02 0.0078 28.2 7.9 117 335-464 180-304 (324)
56 3tc1_A Octaprenyl pyrophosphat 21.7 5.7E+02 0.02 25.0 12.3 100 326-435 123-235 (315)
57 2of3_A ZYG-9; multifunctional 21.4 48 0.0016 32.2 2.8 89 4-95 28-127 (266)
No 1
>3g4d_A (+)-delta-cadinene synthase isozyme XC1; cyclase, lyase, magnesium, metal-binding; 2.40A {Gossypium arboreum} PDB: 3g4f_A*
Probab=100.00 E-value=1.2e-159 Score=1291.69 Aligned_cols=501 Identities=55% Similarity=0.961 Sum_probs=475.7
Q ss_pred chHHHHHHHHHHHHHHhhccCcChhhhhHHHHHHHHhCCccccHHHHHHHHHHHHHhcccCcCCCCCCChhHHHHHHHHh
Q 035568 7 GQSQEIEELKEEVRRELLGSGVDSLSRLKLIDAILRLGVGYQFERELEEALQNLYDAFSNNFYNIEDNDLYHVALRFRIL 86 (518)
Q Consensus 7 ~~~~~~~~lk~~v~~~l~~~~~~~~~~l~liD~lqrLGi~~hF~~EI~~~L~~~~~~~~~~~~~~~~~dl~~~al~FRlL 86 (518)
.+.+|+++||+|||+||.++..|++++|+|||+||||||+|||++||+++|+++|++ . .....||++|||+||||
T Consensus 47 ~~~~~~e~Lk~eVr~~l~~~~~~~~~~l~lID~lqrLGi~~hF~~EI~~~L~~i~~~-~----~~~~~dl~~~al~FRlL 121 (554)
T 3g4d_A 47 ETEKRHQQLKEEVRKMIVAPMANSTQKLAFIDSVQRLGVSYHFTKEIEDELENIYHN-N----NDAENDLYTTSIRFRLL 121 (554)
T ss_dssp HHHHHHHHHHHHHHHHHHSCCSSHHHHHHHHHHHHHTTCGGGCHHHHHHHHHHHHHS-C----CCTTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHcCchhhhHHHHHHHHHHHHhc-c----CCCCCCHHHHHHHHHHH
Confidence 468899999999999997545799999999999999999999999999999999985 1 12237999999999999
Q ss_pred hhcCceechhhhhcccccccccccccccchhhhhhHhhhcccCCCCchHHHHHHHHHHhhcc-------cCcHHHHHHHc
Q 035568 87 RQRGYKVSCDIFNKFKDGKGNFKESLKTDVSGMLSLYEAAHLVVHGEDILNEAIAFTTAHLQ-------SSMAPQVIHAL 159 (518)
Q Consensus 87 R~hGy~vS~dvf~~F~d~~g~F~~~~~~dv~~lL~LyeAs~l~~~gE~iLdea~~ft~~~L~-------~~l~~~V~~aL 159 (518)
|||||+||||||++|+|++|+|++++.+||+||||||||||+++|||+|||||++||++||+ ++|+++|+|||
T Consensus 122 R~hGy~VS~dvf~~F~~~~g~F~~~l~~d~~glL~LYeAs~l~~~gE~iLdeA~~fs~~~L~~~~~~~~~~l~~~V~~aL 201 (554)
T 3g4d_A 122 REHGYNVSCDVFNKFKDEQGNFKSSVTSDVRGLLELYQASYLRVHGEDILDEAISFTTHHLSLAVASLDHPLSEEVSHAL 201 (554)
T ss_dssp HHTTCCCCGGGGGGGBCTTSSBCHHHHHCHHHHHHHHHHHTTCCTTCHHHHHHHHHHHHHHHHHSTTCCTTHHHHHHHHH
T ss_pred HhcCCCCChhHHhhhcccCCCcccccccchHHHHHHHHHHhCCCCCcHHHHHHHHHHHHHHHHHHhccCchHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999998 57999999999
Q ss_pred cCCccCCchhhHHhhhhhhhhccCCcccHHHHHHHhhhhHHHHHhhHHHHHHHHHHHHHhCCCCCCchhhhhhhHhHHHH
Q 035568 160 RQPLYKGLPRIEARFFISLYQEHEPLHNKALLKLAKLDFNQVQSLYKIELSEISRWWKDLDFARKLPFARDRVVECYFWI 239 (518)
Q Consensus 160 ~~P~~~~~~r~e~r~yI~~y~~~~~~~n~~ll~lAkldFn~~Q~~hq~El~~l~rWwk~~~l~~~l~faRdR~ve~yf~~ 239 (518)
+.|||+++||+|||+||++|++ ++++|++||||||||||+||++||+||++++||||++||.++|||||||++|||||+
T Consensus 202 ~~P~~~~l~rlear~yI~~Y~~-~~~~n~~lLelAkldFn~~Q~~hq~El~~l~rWwk~~~l~~~L~faRdr~ve~yfw~ 280 (554)
T 3g4d_A 202 KQSIRRGLPRVEARHYLSVYQD-IESHNKALLEFAKIDFNMLQFLHRKELSEICRWWKDLDFQRKLPYARDRVVEGYFWI 280 (554)
T ss_dssp HCCTTTSCHHHHHHHHHHHHHS-STTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHCTTCCCCHHHHHHHH
T ss_pred CCCccCCchHHHHHHHHHHhCc-CccccHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCcccCCchHHHHHHHHHHH
Confidence 9999999999999999999999 999999999999999999999999999999999999999889999999999999999
Q ss_pred hccccCcchhHHHHHHHHHhhhhhhhhcccccCCCHHHHHHHHHHhhhcCccccccCChhHHHHHHHHHHHHHHHHHHHH
Q 035568 240 VGVYFEPQYSLARKLLTKVISMTSIIDDIYDVYGIPEELDLFTAAIDRWDVSCIDQLPEYMQTFYVALLDLYKEIEEELA 319 (518)
Q Consensus 240 ~a~~feP~~s~~Rl~laK~~~l~~i~DD~fD~~gt~eEl~~~t~ai~rWd~~~~~~lpe~mk~~f~al~~~~~ei~~~~~ 319 (518)
+|++|||+||.+|+++||++++++++||+||+|||+|||++||+||+|||++++++||+|||+||.+|+|+++|++.++.
T Consensus 281 ~~~~feP~~s~~R~~~aK~~~l~tviDD~yD~ygTleEl~~ft~ai~RWD~~~~~~LPeymK~~f~al~~~~~e~~~~~~ 360 (554)
T 3g4d_A 281 SGVYFEPQYSLGRKMLTKVIAMASIVDDTYDSYATYEELIPYTNAIERWDIKCIDEIPEYMKPSYKALLDVYEEMVQLVA 360 (554)
T ss_dssp HHHCCSGGGHHHHHHHHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHCCGGGGGGSCGGGHHHHHHHHHHHHHHHHHHG
T ss_pred HHhhCCccccHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHhcCccccccCcHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999888
Q ss_pred hcCCcchHHHHHHHHHHHHHHHHHHHhHhcCCCCCChHHHHhhhhcccchhHHHHHHHHhcCCCCchHHHhhccCchHHH
Q 035568 320 TKGWSYRVHYAKEEMKILVHGYHDESKWFHNNYVPTMEEYMRVSLVTSGYSMLTAASFLGMDSVVTKEAFDWVSGKPKII 399 (518)
Q Consensus 320 ~~~~~~~~~~~k~~~~~~~~a~l~EA~W~~~g~vPt~eEYl~~~~~S~g~~~~~~~~~~~~g~~l~~ev~e~~~~~~~i~ 399 (518)
++||+++++|++++|+++++||++||+|+++||+||+||||+||++|+|+++++++++++||+.+|+++++|++++|+|+
T Consensus 361 ~~~~~~~~~ylk~~w~~l~~ayl~EAkW~~~gyvPT~EEYl~na~vSsg~~~l~~~~~~~mg~~lt~e~~e~~~~~p~i~ 440 (554)
T 3g4d_A 361 EHGRQYRVEYAKNAMIRLAQSYLVEAKWTLQNYKPSFEEFKANALPTCGYAMLAITSFVGMGDIVTPETFKWAASDPKII 440 (554)
T ss_dssp GGTCTHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCCHHHHHHHHGGGSCHHHHHHHHHHTSCTTSCHHHHHHHHTCCHHH
T ss_pred HcCCcchHHHHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHhccceeehHHHHHHHHHHhcCCCCCHHHHHhccccHHHH
Confidence 99998999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhhhhhccCccchhhhhhcCCCchHHHHHHhhcccCCcccCHHHHHHHHHHHHHHHHHHHHhhccCCCCCCHHHHHH
Q 035568 400 RASTIIGRLMDDIKSHKFEQERGHAASAIECYMKEKEREGVSVTEQEVHEELYKKVGDAWKDINEECLMPTEVPRPLLMR 479 (518)
Q Consensus 400 ~~~~~i~RL~NDI~S~~kE~~~G~~~n~V~cym~e~~~~g~~vS~eeA~~~i~~~i~~~~k~ln~~~l~~~~~p~~~~~~ 479 (518)
+++++|+||+|||+||++|+++|+++|+|+|||+|| | +|+|+|++++++||+++||+||+++++++++|++|+++
T Consensus 441 ~~~~~I~RL~NDI~S~k~E~~rG~van~V~cYMke~---G--vSeEeA~~~i~~~Ie~~wK~lN~e~l~~~~~p~~~~~~ 515 (554)
T 3g4d_A 441 QASTIICRFMDDVAEHKFKHRREDDCSAIECYMEEY---G--VTAQEAYDVFNKHVESAWKDLNQEFLKPTEMPTEVLNR 515 (554)
T ss_dssp HHHHHHHHHHHHHHHHCC------CCCHHHHHHHHH---T--CCHHHHHHHHHHHHHHHHHHHHHHHSSSCSSCHHHHHH
T ss_pred HHHHHHHHHhcccchhhhhhccCCccHHHHHHHHhc---C--CCHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHH
Confidence 999999999999999999999999999999999999 9 99999999999999999999999999988999999999
Q ss_pred HHHHHhhhhhhcccCCCCCCCChhHHHHHHHhcccccCC
Q 035568 480 VLNLSRVIDVIYKEGDGYTHVGQVMKDNIASVLIHPVAI 518 (518)
Q Consensus 480 ~~n~aR~~~~~Y~~~Dg~t~~~~~~k~~i~~ll~~pi~~ 518 (518)
++|+||++++||+++||||.|++.||++|++||++|||+
T Consensus 516 ~~NlaR~~~~~Y~~~Dg~t~~~~~~k~~i~~ll~~Pi~l 554 (554)
T 3g4d_A 516 SLNLARVMDVLYREGDGYTYVGKAAKGGITSLLIEPIAL 554 (554)
T ss_dssp HHHHHHHHHHHSCC-----CCCHHHHHHHHHHHTCCCCC
T ss_pred HHHHHHHHHHHhcCCCCCCCccHHHHHHHHHHhcCCCCC
Confidence 999999999999999999999878999999999999986
No 2
>3m00_A Aristolochene synthase; plant terpenoid cyclase, lyase binding domain, (2-CIS, 6-trans)-2-fluorofarnesyl diphospha magnesium, metal-binding; HET: 2CF; 2.10A {Nicotiana tabacum} PDB: 3lz9_A* 3m02_A* 3m01_A* 5eau_A* 1hxa_A* 1hx9_A* 1hxc_A* 5eas_A 1hxg_A 4di5_A* 5eat_A*
Probab=100.00 E-value=6.8e-159 Score=1284.95 Aligned_cols=499 Identities=50% Similarity=0.878 Sum_probs=480.7
Q ss_pred chHHHHHHHHHHHHHHhhccCcChhhhhHHHHHHHHhCCccccHHHHHHHHHHHHHhcccCcCCCCCCChhHHHHHHHHh
Q 035568 7 GQSQEIEELKEEVRRELLGSGVDSLSRLKLIDAILRLGVGYQFERELEEALQNLYDAFSNNFYNIEDNDLYHVALRFRIL 86 (518)
Q Consensus 7 ~~~~~~~~lk~~v~~~l~~~~~~~~~~l~liD~lqrLGi~~hF~~EI~~~L~~~~~~~~~~~~~~~~~dl~~~al~FRlL 86 (518)
.+.+|+++||+|||+||.++..|++++|+|||+||||||+|||++||+++|+++|++|.. ..||++|||+||||
T Consensus 43 ~~~~~~e~Lk~eVr~~l~~~~~~~~~~L~lID~lqrLGi~~hF~~EI~~~L~~i~~~~~~------~~dl~~~al~FRLL 116 (550)
T 3m00_A 43 KYAKEIEALKEQTRNMLLATGMKLADTLNLIDTIERLGISYHFEKEIDDILDQIYNQNSN------CNDLCTSALQFRLL 116 (550)
T ss_dssp HHHHHHHHHHHHHHHHHTCSSCCHHHHHHHHHHHHHTTCGGGCHHHHHHHHHHHHHHCCC------CSSHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHcCchhhhHHHHHHHHHHHHHhccc------CCCHHHHHHHHHHH
Confidence 467899999999999997545789999999999999999999999999999999998832 47999999999999
Q ss_pred hhcCceechhhhhcccccccccccccccchhhhhhHhhhcccCCCCchHHHHHHHHHHhhcc-------cCcHHHHHHHc
Q 035568 87 RQRGYKVSCDIFNKFKDGKGNFKESLKTDVSGMLSLYEAAHLVVHGEDILNEAIAFTTAHLQ-------SSMAPQVIHAL 159 (518)
Q Consensus 87 R~hGy~vS~dvf~~F~d~~g~F~~~~~~dv~~lL~LyeAs~l~~~gE~iLdea~~ft~~~L~-------~~l~~~V~~aL 159 (518)
|||||+||||||++|+|++|+|++++.+||+||||||||||+++|||+|||||++||++||+ ++|+++|+|||
T Consensus 117 R~hGy~VS~dvf~~F~~~~G~F~~~l~~d~~glL~LYeAs~l~~~gE~iLdeA~~fs~~~L~~~~~~~~~~l~~~V~~aL 196 (550)
T 3m00_A 117 RQHGFNISPEIFSKFQDENGKFKESLASDVLGLLNLYEASHVRTHADDILEDALAFSTIHLESAAPHLKSPLREQVTHAL 196 (550)
T ss_dssp HHTTCCCCGGGGGGGBCTTSCBCGGGGGCHHHHHHHHHHHTTCCTTCGGGTTHHHHHHHHHHHHGGGCCTTHHHHHHHHH
T ss_pred HhcCCCCChHHhhhccccCCCccccchhchHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHHHHHHhccCccHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999998 57999999999
Q ss_pred cCCccCCchhhHHhhhhh-hhhccCCcccHHHHHHHhhhhHHHHHhhHHHHHHHHHHHHHhCCCCCCchhhhhhhHhHHH
Q 035568 160 RQPLYKGLPRIEARFFIS-LYQEHEPLHNKALLKLAKLDFNQVQSLYKIELSEISRWWKDLDFARKLPFARDRVVECYFW 238 (518)
Q Consensus 160 ~~P~~~~~~r~e~r~yI~-~y~~~~~~~n~~ll~lAkldFn~~Q~~hq~El~~l~rWwk~~~l~~~l~faRdR~ve~yf~ 238 (518)
+.|||+++||+|||+||+ +|++ ++++|++||||||||||+||++||+||++++||||++||.++|||||||++|||||
T Consensus 197 ~~P~~~~l~rlear~yI~~~Y~~-~~~~n~~lLelAkldFn~~Q~~hq~EL~~l~rWwk~~~l~~~l~faRdr~ve~yfw 275 (550)
T 3m00_A 197 EQCLHKGVPRVETRFFISSIYDK-EQSKNNVLLRFAKLDFNLLQMLHKQELAQVSRWWKDLDFVTTLPYARDRVVECYFW 275 (550)
T ss_dssp HSCSTTSCHHHHHHHHHHHTGGG-CTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTHHHHSTTSCCCHHHHHHH
T ss_pred CCCccCCchHHHHHHHHHHHhcc-cccccHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCccccCcHHHhHHHHHHH
Confidence 999999999999999999 9999 99999999999999999999999999999999999999988999999999999999
Q ss_pred HhccccCcchhHHHHHHHHHhhhhhhhhcccccCCCHHHHHHHHHHhhhcCccccccCChhHHHHHHHHHHHHHHHHHHH
Q 035568 239 IVGVYFEPQYSLARKLLTKVISMTSIIDDIYDVYGIPEELDLFTAAIDRWDVSCIDQLPEYMQTFYVALLDLYKEIEEEL 318 (518)
Q Consensus 239 ~~a~~feP~~s~~Rl~laK~~~l~~i~DD~fD~~gt~eEl~~~t~ai~rWd~~~~~~lpe~mk~~f~al~~~~~ei~~~~ 318 (518)
++|++|||+||.+|+++||++++++++||+||+|||+|||++||+||+|||++++++||+|||+||.||+|+++|++.++
T Consensus 276 ~~~~~feP~~s~~R~~~aK~~~l~tviDD~yD~ygTleEl~~ft~ai~RWD~~~~~~LPeymK~~f~al~~~~~E~~~~~ 355 (550)
T 3m00_A 276 TLGVYFEPQYSQARVMLVKTISMISIVDDTFDAYGTVKELEAYTDAIQRWDINEIDRLPDYMKISYKAILDLYKDYEKEL 355 (550)
T ss_dssp HHHHCCSGGGHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHCCGGGGGGSCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhhCCccchHHHHHHHHHHHHHHHHHHHccccCCHHHHHHHHHHHHhcCccccccCcHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999988
Q ss_pred HhcCCcchHHHHHHHHHHHHHHHHHHHhHhcCCCCCChHHHHhhhhcccchhHHHHHHHHhcCCCCchHHHhhccCchHH
Q 035568 319 ATKGWSYRVHYAKEEMKILVHGYHDESKWFHNNYVPTMEEYMRVSLVTSGYSMLTAASFLGMDSVVTKEAFDWVSGKPKI 398 (518)
Q Consensus 319 ~~~~~~~~~~~~k~~~~~~~~a~l~EA~W~~~g~vPt~eEYl~~~~~S~g~~~~~~~~~~~~g~~l~~ev~e~~~~~~~i 398 (518)
.++||+++++|++++|+++++||++||+|+++||+||+||||+||++|+|++++++++++|+ +.+|+++++|+.++|+|
T Consensus 356 ~~~~~~~~~~ylk~~w~~l~~ayl~EAkW~~~gyvPT~EEYl~na~vSsg~~~l~~~~f~g~-~~lt~e~~e~~~~~p~i 434 (550)
T 3m00_A 356 SSAGRSHIVCHAIERMKEIVRNYNVESTWFIEGYTPPVSEYLSNALATTTYYLLATTSYLGM-KSATEQDFEWLSKNPKI 434 (550)
T ss_dssp HTTTCGGGHHHHHHHHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHTGGGSHHHHHHHHHHTC-TTCCHHHHHHHHTCCHH
T ss_pred HHcCCcccHHHHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHhccccchHHHHHHHHHHcC-CCCcHHHHHhhcccHHH
Confidence 89999899999999999999999999999999999999999999999999999999998877 67999999999999999
Q ss_pred HHHHhhhhhhccCccchhhhhhcCCCchHHHHHHhhcccCCcccCHHHHHHHHHHHHHHHHHHHHhhccCCCCCCHHHHH
Q 035568 399 IRASTIIGRLMDDIKSHKFEQERGHAASAIECYMKEKEREGVSVTEQEVHEELYKKVGDAWKDINEECLMPTEVPRPLLM 478 (518)
Q Consensus 399 ~~~~~~i~RL~NDI~S~~kE~~~G~~~n~V~cym~e~~~~g~~vS~eeA~~~i~~~i~~~~k~ln~~~l~~~~~p~~~~~ 478 (518)
++++++|+||+|||+||++|+++|+++|+|+|||+|| | +|+|+|++++++||+++||+||+++++++++|+||++
T Consensus 435 ~~~~~~I~RL~NDI~S~k~E~~rG~vas~V~cYMke~---G--vSeEeA~~~i~~~Ie~~wK~lN~e~l~~~~~p~~~~~ 509 (550)
T 3m00_A 435 LEASVIICRVIDDTATYEVEKSRGQIATGIECCMRDY---G--ISTKEAMAKFQNMAETAWKDINEGLLRPTPVSTEFLT 509 (550)
T ss_dssp HHHHHHHHHHHHHHHSHHHHHHTTCTTSHHHHHHHHH---T--CCHHHHHHHHHHHHHHHHHHHHHHTSSSCSSCGGGTH
T ss_pred HHHHhhhheeeccchhHHHHHhcCCcccHHHHHHHhc---C--CCHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHH
Confidence 9999999999999999999999999999999999999 9 9999999999999999999999999998899999999
Q ss_pred HHHHHHhhhhhhcccC-CCCCCCChhHHHHHHHhcccccCC
Q 035568 479 RVLNLSRVIDVIYKEG-DGYTHVGQVMKDNIASVLIHPVAI 518 (518)
Q Consensus 479 ~~~n~aR~~~~~Y~~~-Dg~t~~~~~~k~~i~~ll~~pi~~ 518 (518)
+++|+||++++||+++ ||||.|++.||++|++||++|||+
T Consensus 510 ~~~NlaR~~~~~Y~~~~Dg~t~~~~~~k~~i~~ll~~Pi~~ 550 (550)
T 3m00_A 510 PILNLARIIEVTYIHNLDGYTHPEKVLKPHIINLLVDSIKI 550 (550)
T ss_dssp HHHHHHHHHHHHTSCC-----CCHHHHHHHHHHHHTCCCCC
T ss_pred HHHHHHHHHHHHhCCCCCCCCCccHHHHHHHHHHhhCCCCC
Confidence 9999999999999998 999999778999999999999986
No 3
>3n0f_A Isoprene synthase; terpene cyclase fold, hemiterpene synthase, DDXXD motif, NSE motif, lyase; 2.70A {Populus tremula x populus alba} PDB: 3n0g_A*
Probab=100.00 E-value=1.8e-158 Score=1284.14 Aligned_cols=502 Identities=37% Similarity=0.657 Sum_probs=479.9
Q ss_pred chHHHHHHHHHHHHHHhhccCc-ChhhhhHHHHHHHHhCCccccHHHHHHHHHHHHHhcccCcCCCCCCChhHHHHHHHH
Q 035568 7 GQSQEIEELKEEVRRELLGSGV-DSLSRLKLIDAILRLGVGYQFERELEEALQNLYDAFSNNFYNIEDNDLYHVALRFRI 85 (518)
Q Consensus 7 ~~~~~~~~lk~~v~~~l~~~~~-~~~~~l~liD~lqrLGi~~hF~~EI~~~L~~~~~~~~~~~~~~~~~dl~~~al~FRl 85 (518)
.+++|+++||+|||+||.+ .. +++++|+|||+||||||+|||++||+++|++||+. ..++.+...||++|||+|||
T Consensus 41 ~~~~~~e~Lk~eVr~~l~~-~~~~~~~~L~lID~lqRLGi~~hF~~EI~~~L~~i~~~--~~~~~~~~~DL~~~Al~FRL 117 (555)
T 3n0f_A 41 VYKDKAKKLEAEVRREINN-EKAEFLTLLELIDNVQRLGLGYRFESDIRRALDRFVSS--GGFDGVTKTSLHATALSFRL 117 (555)
T ss_dssp HHHHHHHHHHHHHHHHHHC-TTSCHHHHHHHHHHHHHTTCGGGSHHHHHHHHHHHHHT--CHHHHHTTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHh-cccCHHHHHHHHHHHHHcCchhhhHHHHHHHHHHHHhh--ccccccccCCHHHHHHHHHH
Confidence 4688999999999999975 45 89999999999999999999999999999999974 11111134799999999999
Q ss_pred hhhcCceechhhhhcccccccccccccccchhhhhhHhhhcccCCCCchHHHHHHHHHHhhcc--------cCcHHHHHH
Q 035568 86 LRQRGYKVSCDIFNKFKDGKGNFKESLKTDVSGMLSLYEAAHLVVHGEDILNEAIAFTTAHLQ--------SSMAPQVIH 157 (518)
Q Consensus 86 LR~hGy~vS~dvf~~F~d~~g~F~~~~~~dv~~lL~LyeAs~l~~~gE~iLdea~~ft~~~L~--------~~l~~~V~~ 157 (518)
||||||+||||||++|+|++|+|++++.+||+||||||||||+++|||+|||||++||++||+ ++|+++|+|
T Consensus 118 LR~hGy~VS~dvF~~F~d~~G~F~~~l~~dv~glL~LYeAs~l~~~gE~iLdeA~~Fs~~~L~~~~~~~~~~~l~~~V~~ 197 (555)
T 3n0f_A 118 LRQHGFEVSQEAFSGFKDQNGNFLENLKEDTKAILSLYEASFLALEGENILDEARVFAISHLKELSEEKIGKELAEQVNH 197 (555)
T ss_dssp HHHTTCCCCGGGGGGGBCTTSCBCGGGGGCHHHHHHHHHHHTTCCTTCHHHHHHHHHHHHHHHTCCHHHHCHHHHHHHHH
T ss_pred HHhcCCCcChHHHhcccccCccchhhhhhhhHHHHHHHHHHhcccCCcHHHHHHHHHHHHHHHHHHhccCCchHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999998 458999999
Q ss_pred HccCCccCCchhhHHhhhhhhhhccCCcccHHHHHHHhhhhHHHHHhhHHHHHHHHHHHHHhCCCCCCchhhhhhhHhHH
Q 035568 158 ALRQPLYKGLPRIEARFFISLYQEHEPLHNKALLKLAKLDFNQVQSLYKIELSEISRWWKDLDFARKLPFARDRVVECYF 237 (518)
Q Consensus 158 aL~~P~~~~~~r~e~r~yI~~y~~~~~~~n~~ll~lAkldFn~~Q~~hq~El~~l~rWwk~~~l~~~l~faRdR~ve~yf 237 (518)
||++|||+++||||||+||++|++ ++++|++||||||||||+||++||+||++++||||++||+++|||||||++||||
T Consensus 198 aL~~P~~~~l~Rlear~yI~~Y~~-~~~~n~~lLelAKlDFN~~Q~~hq~EL~~lsrWwk~~~l~~~l~faRdr~ve~yf 276 (555)
T 3n0f_A 198 ALELPLHRRTQRLEAVWSIEAYRK-KEDANQVLLELAILDYNMIQSVYQRDLRETSRWWRRVGLATKLHFARDRLIESFY 276 (555)
T ss_dssp HHHSCTTTSCHHHHHHHHHHHHTT-CTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHCTTCCCCHHHHHH
T ss_pred HhcCCcccCchHHHHHHHHHHhcc-cccccHHHHHHHHHhHHHHHHHhHHHHHHHHHHHHHcCCcccCCchhhHHHHHHH
Confidence 999999999999999999999999 9999999999999999999999999999999999999998899999999999999
Q ss_pred HHhccccCcchhHHHHHHHHHhhhhhhhhcccccCCCHHHHHHHHHHhhhcCccccccCChhHHHHHHHHHHHHHHHHHH
Q 035568 238 WIVGVYFEPQYSLARKLLTKVISMTSIIDDIYDVYGIPEELDLFTAAIDRWDVSCIDQLPEYMQTFYVALLDLYKEIEEE 317 (518)
Q Consensus 238 ~~~a~~feP~~s~~Rl~laK~~~l~~i~DD~fD~~gt~eEl~~~t~ai~rWd~~~~~~lpe~mk~~f~al~~~~~ei~~~ 317 (518)
|++|++|||+||.+|+++||++++++++||+||+|||+|||+.||+||+|||++++++||+|||+||.+|+++++|++.+
T Consensus 277 w~~~~~feP~~s~~R~~~aK~~~l~tviDD~yD~ygt~eEl~~ft~ai~RWD~~~~~~LPeymk~~~~aL~~~~~e~~~~ 356 (555)
T 3n0f_A 277 WAVGVAFEPQYSDCRNSVAKMFSFVTIIDDIYDVYGTLDELELFTDAVERWDVNAINDLPDYMKLCFLALYNTINEIAYD 356 (555)
T ss_dssp HHHHHCCSGGGHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTCGGGGGGSCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhhcCccchHHHHHHHHHHHHHHHHHHhccccCCHHHHHHHHHHHHhcCccccccCcHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999988
Q ss_pred HHhcCCcchHHHHHHHHHHHHHHHHHHHhHhcCCCCCChHHHHhhhhcccchhHHHHHHHHhcCCCCchHHHhhccCchH
Q 035568 318 LATKGWSYRVHYAKEEMKILVHGYHDESKWFHNNYVPTMEEYMRVSLVTSGYSMLTAASFLGMDSVVTKEAFDWVSGKPK 397 (518)
Q Consensus 318 ~~~~~~~~~~~~~k~~~~~~~~a~l~EA~W~~~g~vPt~eEYl~~~~~S~g~~~~~~~~~~~~g~~l~~ev~e~~~~~~~ 397 (518)
+.++||.++++|++++|+++++||++||+|+++||+||+||||+||.+|+|+++++++++++||+.+|+++++|++++|+
T Consensus 357 ~~~~~g~~~~~~l~~~w~~l~~ayl~EAkW~~~gyvPT~EEYl~na~vSsg~~~l~~~~~~~mg~~lt~e~~e~~~~~p~ 436 (555)
T 3n0f_A 357 NLKDKGENILPYLTKAWADLCNAFLQEAKWLYNKSTPTFDDYFGNAWKSSSGPLQLIFAYFAVVQNIKKEEIENLQKYHD 436 (555)
T ss_dssp HHHHHSCCCHHHHHHHHHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHTSHHHHHHHHHHHHCSSCCHHHHHHHHTTCH
T ss_pred HHHhcCccHHHHHHHHHHHHHHHHHHHHHHHccCCCCCHHHHHHhcccchhHHHHHHHHHHhcCCCCCHHHHHhcccchH
Confidence 87776678899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhhhhhccCccchhhhhhcCCCchHHHHHHhhcccCCcccCHHHHHHHHHHHHHHHHHHHHhhccCCCCCCHHHH
Q 035568 398 IIRASTIIGRLMDDIKSHKFEQERGHAASAIECYMKEKEREGVSVTEQEVHEELYKKVGDAWKDINEECLMPTEVPRPLL 477 (518)
Q Consensus 398 i~~~~~~i~RL~NDI~S~~kE~~~G~~~n~V~cym~e~~~~g~~vS~eeA~~~i~~~i~~~~k~ln~~~l~~~~~p~~~~ 477 (518)
|++++++|+||+|||+||++|+++|+++|+|+|||+|| | +|+|+|++++++||+++||+||+++++++++|+||+
T Consensus 437 i~~~~~~i~RL~NDi~S~~~E~~rG~vas~V~cYMke~---G--vSeEeA~~~i~~~Ie~~wK~lN~e~l~~~~~p~~~~ 511 (555)
T 3n0f_A 437 IISRPSHIFRLCNDLASASAEIARGETANSVSCYMRTK---G--ISEELATESVMNLIDETWKKMNKEKLGGSLFAKPFV 511 (555)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTTCCCSHHHHHHHHH---T--CCHHHHHHHHHHHHHHHHHHHHHHHHSCCSSCHHHH
T ss_pred HHHHHHHHHHHhccchhhhhhhhcCCcchHHHHHHHHc---C--CCHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCHHHH
Confidence 99999999999999999999999999999999999999 9 999999999999999999999999999889999999
Q ss_pred HHHHHHHhhhhhhcccCCCCCCCChhHHHHHHHhcccccC
Q 035568 478 MRVLNLSRVIDVIYKEGDGYTHVGQVMKDNIASVLIHPVA 517 (518)
Q Consensus 478 ~~~~n~aR~~~~~Y~~~Dg~t~~~~~~k~~i~~ll~~pi~ 517 (518)
++++|+||++++||+++||||.|++.||++|++||++|||
T Consensus 512 ~~~~n~aR~~~~~Y~~~Dg~t~~~~~~k~~i~~ll~~Pi~ 551 (555)
T 3n0f_A 512 ETAINLARQSHCTYHNGDAHTSPDELTRKRVLSVITEPIL 551 (555)
T ss_dssp HHHHHHHHHHHHHSCCC---CCHHHHHHHHHHHHTTSCCC
T ss_pred HHHHHHHHHHHHHhcCCCCCCCccHHHHHHHHHHHhcCCC
Confidence 9999999999999999999999877899999999999997
No 4
>2ong_A 4S-limonene synthase; monoterpene synthase, monoterpene cyclase, geranyl diphosphate, 2 fluorogeranyl diphosphate linalyl diphosphate; HET: FPG BTB; 2.70A {Mentha spicata} PDB: 2onh_A*
Probab=100.00 E-value=1.5e-152 Score=1243.87 Aligned_cols=503 Identities=33% Similarity=0.599 Sum_probs=485.0
Q ss_pred chHHHHHHHHHHHHHHhhccCcChhhhhHHHHHHHHhCCccccHHHHHHHHHHHHHhcccCcCCC--C-CCChhHHHHHH
Q 035568 7 GQSQEIEELKEEVRRELLGSGVDSLSRLKLIDAILRLGVGYQFERELEEALQNLYDAFSNNFYNI--E-DNDLYHVALRF 83 (518)
Q Consensus 7 ~~~~~~~~lk~~v~~~l~~~~~~~~~~l~liD~lqrLGi~~hF~~EI~~~L~~~~~~~~~~~~~~--~-~~dl~~~al~F 83 (518)
.++++++.||++||+|+.++ .|++++|+|||+||||||+|||++||+++|+++|++|.+ |+.+ . ..||++|||+|
T Consensus 28 ~~~~~~~~Lk~~V~~~~~~~-~d~~~~l~liD~lqrLGi~~hF~~EI~~~L~~i~~~~~~-~~~~~~~~~~dl~~~al~F 105 (543)
T 2ong_A 28 KHVIRASELVTLVKMELEKE-TDQIRQLELIDDLQRMGLSDHFQNEFKEILSSIYLDHHY-YKNPFPKEERDLYSTSLAF 105 (543)
T ss_dssp HHHHHHHHHHHHHHHHHHHC-CCHHHHHHHHHHHHHTTGGGTTHHHHHHHHHHHHHTTTC-CCSSCCCCCCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhcc-cCHHHHHHHHHHHHhCCchhhhHHHHHHHHHHHHHhhcc-cccccccccCCHHHHHHHH
Confidence 46899999999999999864 589999999999999999999999999999999998843 3321 2 46999999999
Q ss_pred HHhhhcCceechhhhhcccccccccccccccchhhhhhHhhhcccCCCCchHHHHHHHHHHhhcc---------cCcHHH
Q 035568 84 RILRQRGYKVSCDIFNKFKDGKGNFKESLKTDVSGMLSLYEAAHLVVHGEDILNEAIAFTTAHLQ---------SSMAPQ 154 (518)
Q Consensus 84 RlLR~hGy~vS~dvf~~F~d~~g~F~~~~~~dv~~lL~LyeAs~l~~~gE~iLdea~~ft~~~L~---------~~l~~~ 154 (518)
||||||||+||||||++|||++|+|++++.+||+||||||||||+++|||+|||||++||++||+ ++|+++
T Consensus 106 RlLR~hGy~vs~dvf~~Fk~~~g~F~~~l~~d~~glL~Ly~As~l~~~gE~iL~eA~~Ft~~~L~~~~~~~~~~~~l~~~ 185 (543)
T 2ong_A 106 RLLREHGFQVAQEVFDSFKNEEGEFKESLSDDTRGLLQLYEASFLLTEGETTLESAREFATKFLEEKVNEGGVDGDLLTR 185 (543)
T ss_dssp HHHHHTTCCCCGGGGGGGBCTTSSBCTTGGGCHHHHHHHHHHHTTCCSSCHHHHHHHHHHHHHHHHHHHSSCSSSHHHHH
T ss_pred HHHHHcCCCccHHHHhcccCCCCCccchhhhccHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHHHHhccCCCCcHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999998 248999
Q ss_pred HHHHccCCccCCchhhHHhhhhhhhhccCCcccHHHHHHHhhhhHHHHHhhHHHHHHHHHHHHHhCCCCCCchhhhhhhH
Q 035568 155 VIHALRQPLYKGLPRIEARFFISLYQEHEPLHNKALLKLAKLDFNQVQSLYKIELSEISRWWKDLDFARKLPFARDRVVE 234 (518)
Q Consensus 155 V~~aL~~P~~~~~~r~e~r~yI~~y~~~~~~~n~~ll~lAkldFn~~Q~~hq~El~~l~rWwk~~~l~~~l~faRdR~ve 234 (518)
|+|||++|||+++||||||+||++|++ ++++|++||||||||||+||++||+||++++|||+++||.+++||||||+++
T Consensus 186 V~~aL~~P~~~~l~rlear~yI~~Y~~-~~~~n~~lLelAkldFn~~Q~~hq~El~~l~rWwk~~~l~~kl~faRdR~ve 264 (543)
T 2ong_A 186 IAYSLDIPLHWRIKRPNAPVWIEWYRK-RPDMNPVVLELAILDLNIVQAQFQEELKESFRWWRNTGFVEKLPFARDRLVE 264 (543)
T ss_dssp HHHHHHSCTTTSCSTTTHHHHHHHHHT-CSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHSCSSCCCHHH
T ss_pred HHHHHhhhHhccchHHHHHHHHHHhcc-CccccHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHcCCcccccHHHHHHHH
Confidence 999999999999999999999999999 9999999999999999999999999999999999999998889999999999
Q ss_pred hHHHHhccccCcchhHHHHHHHHHhhhhhhhhcccccCCCHHHHHHHHHHhhhcCccccccCChhHHHHHHHHHHHHHHH
Q 035568 235 CYFWIVGVYFEPQYSLARKLLTKVISMTSIIDDIYDVYGIPEELDLFTAAIDRWDVSCIDQLPEYMQTFYVALLDLYKEI 314 (518)
Q Consensus 235 ~yf~~~a~~feP~~s~~Rl~laK~~~l~~i~DD~fD~~gt~eEl~~~t~ai~rWd~~~~~~lpe~mk~~f~al~~~~~ei 314 (518)
||||++|++|+|++|.+|+++||+++|+|++||+||+|||++|++.||+||+|||+++++++|+|||+||.+++++++++
T Consensus 265 ~Yfw~~a~~feP~~s~~Rl~~aK~~~litviDD~fD~~gt~eEl~~ft~ai~rWD~~~~~~lPeymk~~~~aL~~~~~ei 344 (543)
T 2ong_A 265 CYFWNTGIIEPRQHASARIMMGKVNALITVIDDIYDVYGTLEELEQFTDLIRRWDINSIDQLPDYMQLCFLALNNFVDDT 344 (543)
T ss_dssp HHHTHHHHTCSTTCHHHHHHHHHHHHHHHHHHHHHHSSSCHHHHHHHHHHHHTTCSSTTTTSCSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhccCCCccHHHHHHHHHHHHHHHHHHHhccCCCHHHHHHHHHHHHhcCccccccCCchhHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhcCCcchHHHHHHHHHHHHHHHHHHHhHhcCCCCCChHHHHhhhhcccchhHHHHHHHHhcCCCCchHHHhhccC
Q 035568 315 EEELATKGWSYRVHYAKEEMKILVHGYHDESKWFHNNYVPTMEEYMRVSLVTSGYSMLTAASFLGMDSVVTKEAFDWVSG 394 (518)
Q Consensus 315 ~~~~~~~~~~~~~~~~k~~~~~~~~a~l~EA~W~~~g~vPt~eEYl~~~~~S~g~~~~~~~~~~~~g~~l~~ev~e~~~~ 394 (518)
+.++.+.|++++++|++++|++++++|++||+|+++||+||+||||+||.+|+|+++++++++++||+.+|+++++|+.+
T Consensus 345 ~~~~~~~~~~~~~~~l~~~w~~l~~ayl~EAkW~~~g~vPt~eEYl~~~~vS~g~~~l~~~~~~~~g~~~t~e~~e~~~~ 424 (543)
T 2ong_A 345 SYDVMKEKGVNVIPYLRQSWVDLADKYMVEARWFYGGHKPSLEEYLENSWQSISGPCMLTHIFFRVTDSFTKETVDSLYK 424 (543)
T ss_dssp HHHHHHHHSCCCHHHHHHHHHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHTCHHHHHHHHHHHHSSCCCHHHHHHHTT
T ss_pred HHHHHHhcCccHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHhcccccchHHHHHHHHHHHcCCCCCHHHHHHhcc
Confidence 98887877778899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred chHHHHHHhhhhhhccCccchhhhhhcCCCchHHHHHHhhcccCCcccCHHHHHHHHHHHHHHHHHHHHhhc-cCCCCCC
Q 035568 395 KPKIIRASTIIGRLMDDIKSHKFEQERGHAASAIECYMKEKEREGVSVTEQEVHEELYKKVGDAWKDINEEC-LMPTEVP 473 (518)
Q Consensus 395 ~~~i~~~~~~i~RL~NDI~S~~kE~~~G~~~n~V~cym~e~~~~g~~vS~eeA~~~i~~~i~~~~k~ln~~~-l~~~~~p 473 (518)
+|+++++++.|+||+|||+||++|+++|+++|+|+|||+|| | +|+|+|+++++++|+++||+||+++ ++++++|
T Consensus 425 ~p~i~~~~~~i~RL~NDi~S~~~E~~rG~~~n~V~cyMke~---g--~s~eeA~~~i~~~ie~~wk~ln~e~~l~~~~vp 499 (543)
T 2ong_A 425 YHDLVRWSSFVLRLADDLGTSVEEVSRGDVPKSLQCYMSDY---N--ASEAEARKHVKWLIAEVWKKMNAERVSKDSPFG 499 (543)
T ss_dssp TCHHHHHHHHHHHHHHHHHSSHHHHHTSCCCCHHHHHHHHT---C--CCHHHHHHHHHHHHHHHHHHHHHHHTCSSCSSC
T ss_pred cHHHHHHHHHHHHHhcccchhhhccccCCccHHHHHHHHHc---C--CCHHHHHHHHHHHHHHHHHHHHHHhccCCCCCC
Confidence 99999999999999999999999999999999999999999 9 9999999999999999999999999 9988899
Q ss_pred HHHHHHHHHHHhhhhhhcccCCCCCCCChhHHHHHHHhcccccC
Q 035568 474 RPLLMRVLNLSRVIDVIYKEGDGYTHVGQVMKDNIASVLIHPVA 517 (518)
Q Consensus 474 ~~~~~~~~n~aR~~~~~Y~~~Dg~t~~~~~~k~~i~~ll~~pi~ 517 (518)
++|+++++|+||+++++|+++||||.|++.||++|++||++|||
T Consensus 500 ~~~~~~~~n~aR~~~~~Y~~~D~~t~~~~~~k~~i~~l~~~pi~ 543 (543)
T 2ong_A 500 KDFIGCAVDLGRMAQLMYHNGDGHGTQHPIIHQQMTRTLFEPFA 543 (543)
T ss_dssp HHHHHHHHHHHHHHHHHTSSCSTTSSSCTTHHHHHHHHHTSCC-
T ss_pred HHHHHHHHHHHHeehhheeCCCCCCCccHHHHHHHHHHhccCCC
Confidence 99999999999999999999999999977899999999999997
No 5
>1n1b_A (+)-bornyl diphosphate synthase; terpene synthase fold, isomerase; 2.00A {Salvia officinalis} SCOP: a.102.4.1 a.128.1.3 PDB: 1n1z_A* 1n20_A* 1n21_A* 1n22_A* 1n23_A* 1n24_A*
Probab=100.00 E-value=2e-152 Score=1242.43 Aligned_cols=504 Identities=35% Similarity=0.627 Sum_probs=471.3
Q ss_pred chHHHHHHHHHHHHHHhhccCcChhhhhHHHHHHHHhCCccccHHHHHHHHHHHHHhcccCc-CCCCCCChhHHHHHHHH
Q 035568 7 GQSQEIEELKEEVRRELLGSGVDSLSRLKLIDAILRLGVGYQFERELEEALQNLYDAFSNNF-YNIEDNDLYHVALRFRI 85 (518)
Q Consensus 7 ~~~~~~~~lk~~v~~~l~~~~~~~~~~l~liD~lqrLGi~~hF~~EI~~~L~~~~~~~~~~~-~~~~~~dl~~~al~FRl 85 (518)
.++++++.||++||+|+.+ ..|++++|+|||+||||||+|||++||+++|+++|+++.... ......||++|||+|||
T Consensus 32 ~~~~~~~~Lk~~V~~~~~~-~~d~~~~l~lvD~lqrLGi~~hF~~EI~~~L~~i~~~~~~~~~~~~~~~dl~~~al~FRl 110 (549)
T 1n1b_A 32 RHLDRKAELIVQVRILLKE-KMEPVQQLELIHDLKYLGLSDFFQDEIKEILGVIYNEHKCFHNNEVEKMDLYFTALGFRL 110 (549)
T ss_dssp HHHHHHHHHHHHHHHHHHS-CCCHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHHHCHHHHHCCCCSCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhc-ccCHHHHHHhHHHHHhCCchhhhHHHHHHHHHHHHhhhccccccccccCChhhchhhhhH
Confidence 3688999999999999986 458999999999999999999999999999999998763210 01114699999999999
Q ss_pred hhhcCceechhhhhccccccc-ccccccccchhhhhhHhhhcccCCCCchHHHHHHHHHHhhcc---c--------CcHH
Q 035568 86 LRQRGYKVSCDIFNKFKDGKG-NFKESLKTDVSGMLSLYEAAHLVVHGEDILNEAIAFTTAHLQ---S--------SMAP 153 (518)
Q Consensus 86 LR~hGy~vS~dvf~~F~d~~g-~F~~~~~~dv~~lL~LyeAs~l~~~gE~iLdea~~ft~~~L~---~--------~l~~ 153 (518)
||||||+||||||++|||++| +|++++.+||+||||||||||+++|||+|||||++||++||+ + +|++
T Consensus 111 LR~hGy~Vs~dvf~~Fk~~~g~~F~~~l~~d~~glL~LY~As~l~~~gE~iL~eA~~Ft~~~L~~~~~~~~~~~~~~l~~ 190 (549)
T 1n1b_A 111 LRQHGFNISQDVFNCFKNEKGIDFKASLAQDTKGMLQLYEASFLLRKGEDTLELAREFATKCLQKKLDEGGNEIDENLLL 190 (549)
T ss_dssp HHHTTCCCCGGGGGGGBCTTSSSBCGGGGGCHHHHHHHHHHHTTCCTTCHHHHHHHHHHHHHHHHHTC------CHHHHH
T ss_pred HHhcCCCcCHHHHhhccCCCCCccchhhhhccHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHhcccccCCCcHHH
Confidence 999999999999999999999 999999999999999999999999999999999999999998 2 3899
Q ss_pred HHHHHccCCccCCchhhHHhhhhhhhhccCCcccHHHHHHHhhhhHHHHHhhHHHHHHHHHHHHHhCCCCCCchhhhhhh
Q 035568 154 QVIHALRQPLYKGLPRIEARFFISLYQEHEPLHNKALLKLAKLDFNQVQSLYKIELSEISRWWKDLDFARKLPFARDRVV 233 (518)
Q Consensus 154 ~V~~aL~~P~~~~~~r~e~r~yI~~y~~~~~~~n~~ll~lAkldFn~~Q~~hq~El~~l~rWwk~~~l~~~l~faRdR~v 233 (518)
+|+|||++|||+++||||||+||++|++ ++++|++||||||||||+||++||+||++++|||+++||.+++||||||++
T Consensus 191 ~V~~aL~~P~~~~l~rlear~yI~~Y~~-~~~~n~~lLelAkldFn~~Q~~hq~El~~l~rWwke~~l~~kl~faRdR~v 269 (549)
T 1n1b_A 191 WIRHSLDLPLHWRIQSVEARWFIDAYAR-RPDMNPLIFELAKLNFNIIQATHQQELKDLSRWWSRLCFPEKLPFVRDRLV 269 (549)
T ss_dssp HHHHHHHSCGGGCCTTTSHHHHHHHHHH-CTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHCTTSCCCHH
T ss_pred HHHHHhcCchhcCchHHHHHHHHHHhcc-cccccHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhCCcccccHHHHHHH
Confidence 9999999999999999999999999999 999999999999999999999999999999999999999878999999999
Q ss_pred HhHHHHhccccCcchhHHHHHHHHHhhhhhhhhcccccCCCHHHHHHHHHHhhhcCccccccCChhHHHHHHHHHHHHHH
Q 035568 234 ECYFWIVGVYFEPQYSLARKLLTKVISMTSIIDDIYDVYGIPEELDLFTAAIDRWDVSCIDQLPEYMQTFYVALLDLYKE 313 (518)
Q Consensus 234 e~yf~~~a~~feP~~s~~Rl~laK~~~l~~i~DD~fD~~gt~eEl~~~t~ai~rWd~~~~~~lpe~mk~~f~al~~~~~e 313 (518)
+||||++|++|+|++|.+|+++||+++|+|++||+||+|||++|++.||+||+|||+++++++|+|||+||.++++++++
T Consensus 270 e~Yfw~~a~~feP~~s~~Rl~~aK~~~l~tviDD~yD~~gt~eEl~~ft~ai~rWD~~~~~~lPeymk~~~~aL~d~~~e 349 (549)
T 1n1b_A 270 ESFFWAVGMFEPHQHGYQRKMAATIIVLATVIDDIYDVYGTLDELELFTDTFKRWDTESITRLPYYMQLCYWGVHNYISD 349 (549)
T ss_dssp HHHHHHHHHCCSTTCHHHHHHHHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHTCSSGGGGSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCCCcHHHHHHHHHHHHHHHHHHHhccCCCHHHHHHHHHHHHhcCccccccCccHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhcCCcchHHHHHHHHHHHHHHHHHHHhHhcCCCCCChHHHHhhhhcccchhHHHHHHHHhcCCCCchHH-Hhhc
Q 035568 314 IEEELATKGWSYRVHYAKEEMKILVHGYHDESKWFHNNYVPTMEEYMRVSLVTSGYSMLTAASFLGMDSVVTKEA-FDWV 392 (518)
Q Consensus 314 i~~~~~~~~~~~~~~~~k~~~~~~~~a~l~EA~W~~~g~vPt~eEYl~~~~~S~g~~~~~~~~~~~~g~~l~~ev-~e~~ 392 (518)
++.++.+.|++++++|++++|++++++|++||+|+++||+||+||||+||.+|+|+++++++++++||+.+|+++ ++|+
T Consensus 350 i~~~~~~~~~~~~~~~l~~~w~~l~~ayl~EAkW~~~g~vPt~eEYl~~~~vS~g~~~l~~~~~~~~g~~lt~e~~~e~~ 429 (549)
T 1n1b_A 350 AAYDILKEHGFFCLQYLRKSVVDLVEAYFHEAKWYHSGYTPSLDEYLNIAKISVASPAIISPTYFTFANASHDTAVIDSL 429 (549)
T ss_dssp HHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTCHHHHHHHHHTTSTTCCCCHHHHHHH
T ss_pred HHHHHHHhcCccHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHhcccchhHHHHHHHHHHHcCCCCcHHHHHhhh
Confidence 998887776778899999999999999999999999999999999999999999999999999999999999999 9999
Q ss_pred cCchHHHHHHhhhhhhccCccchhhhhhcCCCchHHHHHHhhcccCCcccCHHHHHHHHHHHHHHHHHHHHhhccCCCCC
Q 035568 393 SGKPKIIRASTIIGRLMDDIKSHKFEQERGHAASAIECYMKEKEREGVSVTEQEVHEELYKKVGDAWKDINEECLMPTEV 472 (518)
Q Consensus 393 ~~~~~i~~~~~~i~RL~NDI~S~~kE~~~G~~~n~V~cym~e~~~~g~~vS~eeA~~~i~~~i~~~~k~ln~~~l~~~~~ 472 (518)
.++|+++++++.++||+|||+||++|+++|+++|+|+|||+|| | +|+|+|++++++||+++||+||+++++++++
T Consensus 430 ~~~p~i~~~~~~i~RL~NDi~S~~~E~~rG~v~n~V~cyMke~---g--~s~eeA~~~i~~~i~~~wk~ln~e~l~~~~v 504 (549)
T 1n1b_A 430 YQYHDILCLAGIILRLPDDLGTSYFELARGDVPKTIQCYMKET---N--ASEEEAVEHVKFLIREAWKDMNTAIAAGYPF 504 (549)
T ss_dssp HTTCHHHHHHHHHHHHHHHHC---------CCCCHHHHHHHHH---C--CCHHHHHHHHHHHHHHHHHHHHHHHHTCCSS
T ss_pred cccHHHHHHHHHHHHHhcccchhhhhhccCCccHHHHHHHHHc---C--CCHHHHHHHHHHHHHHHHHHHHHHHhcCCCC
Confidence 9999999999999999999999999999999999999999999 9 9999999999999999999999999998899
Q ss_pred CHHHHHHHHHHHhhhhhhcccCCCCCCCChhHHHHHHHhcccccC
Q 035568 473 PRPLLMRVLNLSRVIDVIYKEGDGYTHVGQVMKDNIASVLIHPVA 517 (518)
Q Consensus 473 p~~~~~~~~n~aR~~~~~Y~~~Dg~t~~~~~~k~~i~~ll~~pi~ 517 (518)
|++|+++++|+||++++||+++||||.|++.||++|++||++|||
T Consensus 505 p~~~~~~~~n~~R~~~~~Y~~~Dg~t~~~~~~k~~i~~l~~~pi~ 549 (549)
T 1n1b_A 505 PDGMVAGAANIGRVAQFIYLHGDGFGVQHSKTYEHIAGLLFEPYA 549 (549)
T ss_dssp CHHHHHHHHHHHHHHHHHTTTSCCC----CHHHHHHHHHHTSCCC
T ss_pred CHHHHHHHHHHHHeeehheeCCCCCCCCcHHHHHHHHHHhcCCCC
Confidence 999999999999999999999999999987899999999999997
No 6
>2j5c_A 1,8-cineole synthase; terpene synthases, 1, monoterpene, lyase; 1.95A {Salvia fruticosa}
Probab=100.00 E-value=9.8e-152 Score=1240.65 Aligned_cols=498 Identities=36% Similarity=0.618 Sum_probs=463.7
Q ss_pred chHHHHHHHHHHHHHHhhccCcChhhhhHHHHHHHHhCCccccHHHHHHHHHHHH-HhcccCcCCCCCCChhHHHHHHHH
Q 035568 7 GQSQEIEELKEEVRRELLGSGVDSLSRLKLIDAILRLGVGYQFERELEEALQNLY-DAFSNNFYNIEDNDLYHVALRFRI 85 (518)
Q Consensus 7 ~~~~~~~~lk~~v~~~l~~~~~~~~~~l~liD~lqrLGi~~hF~~EI~~~L~~~~-~~~~~~~~~~~~~dl~~~al~FRl 85 (518)
.++++++.||++||+|+.++ .|++++|+|||+||||||+|||++||+++|++|| +++.+ ...||++|||+|||
T Consensus 61 ~~~~~~~~Lk~~Vr~~~~~~-~d~~~~l~lID~lqrLGi~~hFe~EI~~~L~~i~~~~~~~-----~~~Dl~~~al~FRl 134 (569)
T 2j5c_A 61 KHLMRAAGMIDQVKMMLQEE-VDSIRRLELIDDLRRLGISCHFEREIVEILNSKYYTNNEI-----DERDLYSTALRFRL 134 (569)
T ss_dssp -CHHHHHHHHHHHHHHHHHC-CCHHHHHHHHHHHHHHTCGGGGHHHHHHHHHHHTTSSCCS-----CTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhcc-ccHHHHHHHHHHHHhCCchhhhHHHHHHHHHHHHHhccCc-----ccCChhhhhHHhHH
Confidence 36899999999999999864 5899999999999999999999999999999999 76421 34699999999999
Q ss_pred hhhcCceechhhhhccccccc-ccccccccchhhhhhHhhhcccCCCCchHHHHHHHHHHhhcc--------cCcHHHHH
Q 035568 86 LRQRGYKVSCDIFNKFKDGKG-NFKESLKTDVSGMLSLYEAAHLVVHGEDILNEAIAFTTAHLQ--------SSMAPQVI 156 (518)
Q Consensus 86 LR~hGy~vS~dvf~~F~d~~g-~F~~~~~~dv~~lL~LyeAs~l~~~gE~iLdea~~ft~~~L~--------~~l~~~V~ 156 (518)
||||||+||||||++|||++| +|++++.+||+||||||||||+++|||+|||||++||++||+ ++|+++|+
T Consensus 135 LR~hGy~Vs~dvF~~Fkd~~G~~F~~~l~~dv~glL~LY~As~l~~~gE~iLdeA~~Ft~~~L~~~~~~~~~~~l~~~V~ 214 (569)
T 2j5c_A 135 LRQYDFSVSQEVFDCFKNAKGTDFKPSLVDDTRGLLQLYEASFLSAQGEETLRLARDFATKFLQKRVLVDKDINLLSSIE 214 (569)
T ss_dssp HHHTTCCCCGGGGGGGBCSSSSSBCGGGGGCHHHHHHHHHHHTTCCTTCHHHHHHHHHHHHTTSSCC----CHHHHHHHH
T ss_pred HHhcCCCcCHHHHhcccCCCCCccccchhhccHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHhhcCCCcHHHHHH
Confidence 999999999999999999999 999999999999999999999999999999999999999999 35899999
Q ss_pred HHccCCccCCchhhHHhhhhhhhhccCCcccHHHHHHHhhhhHHHHHhhHHHHHHHHHHHHHhCCCCCCchhhhhhhHhH
Q 035568 157 HALRQPLYKGLPRIEARFFISLYQEHEPLHNKALLKLAKLDFNQVQSLYKIELSEISRWWKDLDFARKLPFARDRVVECY 236 (518)
Q Consensus 157 ~aL~~P~~~~~~r~e~r~yI~~y~~~~~~~n~~ll~lAkldFn~~Q~~hq~El~~l~rWwk~~~l~~~l~faRdR~ve~y 236 (518)
|||++|||+++||||||+||++|++ ++++|++||||||||||+||++||+||++++|||+++||.+++||||+|+++||
T Consensus 215 ~aL~~P~~~~l~rlear~yI~~Y~~-~~~~n~~lLelAkldFn~~Q~~hq~EL~~l~rWwke~~L~~kl~faRdR~ve~Y 293 (569)
T 2j5c_A 215 RALELPTHWRVQMPNARSFIDAYKR-RPDMNPTVLELAKLDFNMVQAQFQQELKEASRWWNSTGLVHELPFVRDRIVECY 293 (569)
T ss_dssp HHHHSCGGGCCSHHHHHHHHHHHTT-CTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHCC--CCCHHHHH
T ss_pred HHhcCccccCcHHHHHHHHHHHhcc-CccccHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHcCCccccchHHHHHHHHH
Confidence 9999999999999999999999999 999999999999999999999999999999999999999888999999999999
Q ss_pred HHHhccccCcchhHHHHHHHHHhhhhhhhhcccccCCCHHHHHHHHHHhhhcCccccccCChhHHHHHHHHHHHHHHHHH
Q 035568 237 FWIVGVYFEPQYSLARKLLTKVISMTSIIDDIYDVYGIPEELDLFTAAIDRWDVSCIDQLPEYMQTFYVALLDLYKEIEE 316 (518)
Q Consensus 237 f~~~a~~feP~~s~~Rl~laK~~~l~~i~DD~fD~~gt~eEl~~~t~ai~rWd~~~~~~lpe~mk~~f~al~~~~~ei~~ 316 (518)
||++|++|+|++|.+|+++||+++|+|++||+||+|||++|++.||+||+|||+++++++|+|||+||.++++++++++.
T Consensus 294 fw~~a~~feP~~S~~Rl~~aK~~~litviDD~fD~ygT~eEl~~ft~ai~rWD~~~~~~lPeymk~~~~aL~~~~~ei~~ 373 (569)
T 2j5c_A 294 YWTTGVVERRQHGYERIMLTKINALVTTIDDVFDIYGTLEELQLFTTAIQRWDIESMKQLPPYMQICYLALFNFVNEMAY 373 (569)
T ss_dssp HHHHHHCCCGGGHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTSSGGGGGSCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhhcCCCccHHHHHHHHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHcCccccccCCchhHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhcCCcchHHHHHHHHHHHHHHHHHHHhHhcCCCCCChHHHHhhhhcccchhHHHHHHHHhcCCCCchHHHhhccCch
Q 035568 317 ELATKGWSYRVHYAKEEMKILVHGYHDESKWFHNNYVPTMEEYMRVSLVTSGYSMLTAASFLGMDSVVTKEAFDWVSGKP 396 (518)
Q Consensus 317 ~~~~~~~~~~~~~~k~~~~~~~~a~l~EA~W~~~g~vPt~eEYl~~~~~S~g~~~~~~~~~~~~g~~l~~ev~e~~~~~~ 396 (518)
++.+.|++++++|++++|++++++|++||+|+.+||+||+||||+||.+|+|+++++++++++||+.+|+++++|+.++|
T Consensus 374 ~~~~~~~~~~~~~l~~~w~~l~~ayl~EAkW~~~g~vPt~eEYl~~~~vSsg~~~l~~~~~~~~g~~lt~e~~e~l~~~p 453 (569)
T 2j5c_A 374 DTLRDKGFDSTPYLRKVWVGLIESYLIEAKWYYKGHKPSLEEYMKNSWISIGGIPILSHLFFRLTDSIEEEAAESMHKYH 453 (569)
T ss_dssp HHHHHHSCCCHHHHHHHHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTSCHHHHHHHHHHSCSSCCHHHHHHHTTTC
T ss_pred HHHHhcCccHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHhcccccchHHHHHHHHHHHcCCCCCHHHHHHhhccH
Confidence 88887777889999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhhhhhccCccchhhhhhcCCCchHHHHHHhhcccCCcccCHHHHHHHHHHHHHHHHHHHHhhccCCCCCCHHH
Q 035568 397 KIIRASTIIGRLMDDIKSHKFEQERGHAASAIECYMKEKEREGVSVTEQEVHEELYKKVGDAWKDINEECLMPTEVPRPL 476 (518)
Q Consensus 397 ~i~~~~~~i~RL~NDI~S~~kE~~~G~~~n~V~cym~e~~~~g~~vS~eeA~~~i~~~i~~~~k~ln~~~l~~~~~p~~~ 476 (518)
+|+++++.|+||+|||+||++|+++|+++|+|+|||+|+ | +|+|+|+++++++|+++||+||+++++ +++|++|
T Consensus 454 ~i~~~~~~i~RL~NDI~S~~~E~~rG~v~s~V~cyMke~---g--~s~eeA~~~i~~~ie~~wk~ln~e~l~-~~vp~~~ 527 (569)
T 2j5c_A 454 DIVRASCTILRLADDMGTSLDEVERGDVPKSVQCYMNEK---N--ASEEEAREHVRSLIDQTWKMMNKEMMT-SSFSKYF 527 (569)
T ss_dssp HHHHHHHHHHHHHHHHHC----------CCHHHHC-----------CCHHHHHHHHHHHHHHHHHHHHHHHH-CCSCHHH
T ss_pred HHHHHHHHHHHHhcccchhhhhcccCCccHHHHHHHHHc---C--CCHHHHHHHHHHHHHHHHHHHHHHHhc-cCCCHHH
Confidence 999999999999999999999999999999999999999 9 999999999999999999999999999 8899999
Q ss_pred HHHHHHHHhhhhhhcccC-CCCCCCChhHHHHHHHhcccccC
Q 035568 477 LMRVLNLSRVIDVIYKEG-DGYTHVGQVMKDNIASVLIHPVA 517 (518)
Q Consensus 477 ~~~~~n~aR~~~~~Y~~~-Dg~t~~~~~~k~~i~~ll~~pi~ 517 (518)
+++++|+||+++++|+++ ||||.|++.||++|++||++|||
T Consensus 528 ~~~~~nlaR~~~~~Y~~~~Dg~t~~~~~~k~~i~~ll~~pi~ 569 (569)
T 2j5c_A 528 VEVSANLARMAQWIYQHESDGFGMQHSLVNKMLRDLLFHRYE 569 (569)
T ss_dssp HHHHHHHHHHHHHHTGGGSCTTC-CCCHHHHHHHHHHTSCCC
T ss_pred HHHHHHHHheeehhccCCCcCCCCchHHHHHHHHHHhccCCC
Confidence 999999999999999999 99999977899999999999997
No 7
>3sdr_A Alpha-bisabolene synthase; lyase, terpene synthase; HET: 210; 1.86A {Abies grandis} PDB: 3sdq_A 3sae_A* 3sdt_A* 3sdu_A* 3sdv_A*
Probab=100.00 E-value=2.7e-144 Score=1218.24 Aligned_cols=486 Identities=36% Similarity=0.633 Sum_probs=456.8
Q ss_pred CcChhhhhHHHHHHHHhCCccccHHHHHHHHHHHHHhcccCcCCCC----CCChhHHHHHHHHhhhcCceechhhhhccc
Q 035568 27 GVDSLSRLKLIDAILRLGVGYQFERELEEALQNLYDAFSNNFYNIE----DNDLYHVALRFRILRQRGYKVSCDIFNKFK 102 (518)
Q Consensus 27 ~~~~~~~l~liD~lqrLGi~~hF~~EI~~~L~~~~~~~~~~~~~~~----~~dl~~~al~FRlLR~hGy~vS~dvf~~F~ 102 (518)
|.|++++|++||+||||||+|||++||+++|+++|++|.++|+... ..||++|||+|||||||||+||||||++|+
T Consensus 295 P~d~~e~l~lID~LqrLGi~~hF~~EI~~~L~~i~~~~~~~gi~~~~~~~~~Dl~~tAl~FRlLR~~Gy~VS~dvf~~F~ 374 (817)
T 3sdr_A 295 PVDLLERLLIVDNIVRLGIYRHFEKEIKEALDYVYRHWNERGIGWGRLNPIADLETTALGFRLLRLHRYNVSPAIFDNFK 374 (817)
T ss_dssp CCHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHHHCCTTCCCSSTTCSSCCHHHHHHHHHHHHHTTCCCCGGGGGGGB
T ss_pred CCcHHHHHHHHHHHHHcCCccccHHHHHHHHHHHHHHhhhcccccccCCCCCCHHHHHHHHHHHHHcCCCccHhHHHHHh
Confidence 6889999999999999999999999999999999999987766431 359999999999999999999999999999
Q ss_pred cccccccccc---ccchhhhhhHhhhcccCCCCchHHHHHHHHHHhhcc---------------cCcHHHHHHHccCCcc
Q 035568 103 DGKGNFKESL---KTDVSGMLSLYEAAHLVVHGEDILNEAIAFTTAHLQ---------------SSMAPQVIHALRQPLY 164 (518)
Q Consensus 103 d~~g~F~~~~---~~dv~~lL~LyeAs~l~~~gE~iLdea~~ft~~~L~---------------~~l~~~V~~aL~~P~~ 164 (518)
|++|+|++++ .+||+||||||||||+++|||+|||||++||++||+ ++|+++|+|||++|||
T Consensus 375 d~~g~F~~~~~~~~~dv~gmL~LYeAS~l~~~gE~iLdeA~~Ft~~~L~~~~~~~~~~~~~~~~~~L~~eV~~aL~~P~~ 454 (817)
T 3sdr_A 375 DANGKFICSTGQFNKDVASMLNLYRASQLAFPGENILDEAKSFATKYLREALEKSETSSAWNNKQNLSQEIKYALKTSWH 454 (817)
T ss_dssp CC--CBCCCSSCHHHHHHHHHHHHHHHTTCCTTCHHHHHHHHHHHHHHHHHHTSGGGGSHHHHHTTHHHHHHHHHHCCST
T ss_pred hcCCCceechhhhchhhHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHhccccccccccCCcHHHHHHHHhcCchh
Confidence 9999999966 699999999999999999999999999999999997 2489999999999999
Q ss_pred CCchhhHHhhhhhhhhccCCc------------ccHHHHHHHhhhhHHHHHhhHHHHHHHHHHHHHhCCCCCCchhhhhh
Q 035568 165 KGLPRIEARFFISLYQEHEPL------------HNKALLKLAKLDFNQVQSLYKIELSEISRWWKDLDFARKLPFARDRV 232 (518)
Q Consensus 165 ~~~~r~e~r~yI~~y~~~~~~------------~n~~ll~lAkldFn~~Q~~hq~El~~l~rWwk~~~l~~~l~faRdR~ 232 (518)
+++||||||+||++|++ ++. +|++||||||||||+||++||+||++++||||++|| .++||||||+
T Consensus 455 ~~l~Rlear~yI~~Y~~-~~~~i~Kt~yr~~~~~n~~lLelAKlDFN~~Q~~hq~EL~~lsrWwk~~~l-~~l~faRdr~ 532 (817)
T 3sdr_A 455 ASVPRVEAKRYCQVYRP-DYARIAKCVYKLPYVNNEKFLELGKLDFNIIQSIHQEEMKNVTSWFRDSGL-PLFTFARERP 532 (817)
T ss_dssp TCCHHHHHHHHHTTCCT-TCCEESSSEECCTTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSG-GGCTTSCCCH
T ss_pred ccChHHHHHHHHHHhCc-cchhhhhhcccccccccHHHHHHHHHHHHHHHHHhhhhhhhhceeHHhcCC-CcCccHHHHH
Confidence 99999999999999998 765 499999999999999999999999999999999999 6999999999
Q ss_pred hHhHHHHhccccCcchhHHHHHHHHHhhhhhhhhcccccCCCHHHHHHHHHHhhhcCccccccCChhHHHHHHHHHHHHH
Q 035568 233 VECYFWIVGVYFEPQYSLARKLLTKVISMTSIIDDIYDVYGIPEELDLFTAAIDRWDVSCIDQLPEYMQTFYVALLDLYK 312 (518)
Q Consensus 233 ve~yf~~~a~~feP~~s~~Rl~laK~~~l~~i~DD~fD~~gt~eEl~~~t~ai~rWd~~~~~~lpe~mk~~f~al~~~~~ 312 (518)
+|||||++|++|||+||.+|+++||++++++++||+||+|||+||++.||+||+|||++++++||+|||+||.+|+++++
T Consensus 533 ve~Yfw~~~~~feP~~s~~R~~~aK~~~l~tviDD~yD~ygT~eEl~~ft~ai~RWD~~~~~~LPeymk~~~~aL~~~~~ 612 (817)
T 3sdr_A 533 LEFYFLVAAGTYEPQYAKCRFLFTKVACLQTVLDDMYDTYGTLDELKLFTEAVRRWDLSFTENLPDYMKLCYQIYYDIVH 612 (817)
T ss_dssp HHHHHHHHTTSCCGGGHHHHHHHHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHTCGGGGGGSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccCccchHHHHHHHHHHHHHHHHHHHcccCCCHHHHHHHHHHHHHcCchhhhcCchHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhcCCcchHHHHHHHHHHHHHHHHHHHhHhcCCCCCChHHHHhhhhcccchhH-HHHHHHHhcCCCCchHHHhh
Q 035568 313 EIEEELATKGWSYRVHYAKEEMKILVHGYHDESKWFHNNYVPTMEEYMRVSLVTSGYSM-LTAASFLGMDSVVTKEAFDW 391 (518)
Q Consensus 313 ei~~~~~~~~~~~~~~~~k~~~~~~~~a~l~EA~W~~~g~vPt~eEYl~~~~~S~g~~~-~~~~~~~~~g~~l~~ev~e~ 391 (518)
|++.++.++++.++++|++++|++++++|++||+|+++||+||+||||+||++|+|+++ ++.++++++|+.+|+++++|
T Consensus 613 e~~~~~~~~~g~~~~~~l~~aw~~l~~ayl~EAkW~~~gyvPt~eEYl~na~vS~g~~~ll~~~~~~~~g~~lt~e~~e~ 692 (817)
T 3sdr_A 613 EVAWEAEKEQGRELVSFFRKGWEDYLLGYYEEAEWLAAEYVPTLDEYIKNGITSIGQRILLLSGVLIMDGQLLSQEALEK 692 (817)
T ss_dssp HHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHTCHHHHHHHHHTTCTTCCCCHHHHHT
T ss_pred HHHHHHHHhcCccHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHhccccccccHHHHHHHHHHcCCCCCHHHHhc
Confidence 99988877655588999999999999999999999999999999999999999999999 88888999999999999999
Q ss_pred cc--CchHHHHHHhhhhhhccCccchhhhhhcCCCchHHHHHHhhcccCCcccCHHHHHHHHHHHHHHHHHHHHhhccCC
Q 035568 392 VS--GKPKIIRASTIIGRLMDDIKSHKFEQERGHAASAIECYMKEKEREGVSVTEQEVHEELYKKVGDAWKDINEECLMP 469 (518)
Q Consensus 392 ~~--~~~~i~~~~~~i~RL~NDI~S~~kE~~~G~~~n~V~cym~e~~~~g~~vS~eeA~~~i~~~i~~~~k~ln~~~l~~ 469 (518)
+. +.|+|+++++.|+||+|||+||++|+++|+++|+|+|||+||| | +|+|+|+++++++|+++||+||++++++
T Consensus 693 ~~~~s~p~l~~~~~~I~RL~NDi~S~k~E~~rG~~assV~cYMke~~--g--vS~EeA~~~i~~~Ie~~wKeln~e~l~~ 768 (817)
T 3sdr_A 693 VDYPGRRVLTELNSLISRLADDTKTYKAEKARGELASSIECYMKDHP--E--CTEEEALDHIYSILEPAVKELTREFLKP 768 (817)
T ss_dssp TCCTTSCSHHHHHHHHHHHHHHHHSSCC------CCCHHHHHHHHST--T--SCHHHHHHHHHHHHHHHHHHHHHHHHSC
T ss_pred ccccchHHHHHHHHHHHHHhccchHHHHHHhcCCcchHHHHHHHhCC--C--CCHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 54 4459999999999999999999999999999999999999996 7 9999999999999999999999999998
Q ss_pred CCCCHHHHHHHHHHHhhhhhhcccCCCCCCCChhHHHHHHHhcccccCC
Q 035568 470 TEVPRPLLMRVLNLSRVIDVIYKEGDGYTHVGQVMKDNIASVLIHPVAI 518 (518)
Q Consensus 470 ~~~p~~~~~~~~n~aR~~~~~Y~~~Dg~t~~~~~~k~~i~~ll~~pi~~ 518 (518)
+++|++|+++++|++|++++||+++||||.|++.||++|++||++|||+
T Consensus 769 ~~~p~~~~~~~ln~aR~~~~~Y~~~Dg~t~~~~~~k~~i~~ll~~pi~l 817 (817)
T 3sdr_A 769 DDVPFACKKMLFEETRVTMVIFKDGDGFGVSKLEVKDHIKECLIEPLPL 817 (817)
T ss_dssp CSSCHHHHHHHHHHHHHHHHHTCSCCSSCCCHHHHHHHHHHHHTCCCCC
T ss_pred CCCCHHHHHHHHHHHHHHHHHhcCCCCCCCchHHHHHHHHHHhcCCCCC
Confidence 8999999999999999999999999999999778999999999999985
No 8
>3p5p_A Taxadiene synthase; class I and II terpene cyclase fold, diterpene cyclase, DDXX NSE/DTE motif, 3-azacopalyl diphosphate; HET: A3C; 1.82A {Taxus brevifolia} PDB: 3p5r_A*
Probab=100.00 E-value=6.6e-144 Score=1207.90 Aligned_cols=483 Identities=32% Similarity=0.568 Sum_probs=455.8
Q ss_pred CcChhhhhHHHHHHHHhCCccccHHHHHHHHHHHHHhcccCcCCCC----CCChhHHHHHHHHhhhcCceechhhhhccc
Q 035568 27 GVDSLSRLKLIDAILRLGVGYQFERELEEALQNLYDAFSNNFYNIE----DNDLYHVALRFRILRQRGYKVSCDIFNKFK 102 (518)
Q Consensus 27 ~~~~~~~l~liD~lqrLGi~~hF~~EI~~~L~~~~~~~~~~~~~~~----~~dl~~~al~FRlLR~hGy~vS~dvf~~F~ 102 (518)
|.|++++|++||+||||||+|||++||+++|+++|++|.++|+... ..||++|||+|||||||||+||||||++|+
T Consensus 243 P~d~~e~l~lID~LqrLGi~~hF~~EI~~~L~~i~~~~~~~gi~~~~~~~~~Dl~~tAl~FRlLR~~Gy~VS~dvf~~F~ 322 (764)
T 3p5p_A 243 SIDLLERLSLVDNIEHLGIGRHFKQEIKGALDYVYRHWSERGIGWGRDSLVPDLNTTALGLRTLRMHGYNVSSDVLNNFK 322 (764)
T ss_dssp CCHHHHHHHHHHHHHHHTCGGGGHHHHHHHHHHHHHTCCTTCCCSSTTCSSCCHHHHHHHHHHHHHTTCCCCGGGGGGGB
T ss_pred CCcHHHHHHHHHHHHHcCCccccHHHHHHHHHHHHHHhhhcccccccCCCCCCHHHHHHHHHHHHhcCCCccHhHHHhhh
Confidence 6889999999999999999999999999999999999987666432 359999999999999999999999999999
Q ss_pred ccccccccc---cccchhhhhhHhhhcccCCCCchHHHHHHHHHHhhcc----------cCcHHHHHHHccCCccCCchh
Q 035568 103 DGKGNFKES---LKTDVSGMLSLYEAAHLVVHGEDILNEAIAFTTAHLQ----------SSMAPQVIHALRQPLYKGLPR 169 (518)
Q Consensus 103 d~~g~F~~~---~~~dv~~lL~LyeAs~l~~~gE~iLdea~~ft~~~L~----------~~l~~~V~~aL~~P~~~~~~r 169 (518)
|++|+|+++ +.+||+||||||||||+++|||+|||||++||++||+ ++|+++|+|||++|||+++||
T Consensus 323 d~~g~F~~~~~~~~~dv~gmL~LYeAS~l~~~gE~iLdeA~~Fs~~~L~~~~~~~~~~~~~L~~eV~~aL~~P~~~~l~R 402 (764)
T 3p5p_A 323 DENGRFFSSAGQTHVELRSVVNLFRASDLAFPDERAMDDARKFAEPYLREALATKISTNTKLFKEIEYVVEYPWHMSIPR 402 (764)
T ss_dssp CTTSCBCSCTTCSCCCHHHHHHHHHHHTTCCTTCHHHHHHHHHHHHHHHHHHHHTSCSSSHHHHHHHHHHHSCGGGCCHH
T ss_pred cCCCCccccccccccccHHHHHHHHHHhCCCCCcHHHHHHHHHHHHHHHHHHhccCCCCccHHHHHHHHhcCchhccchH
Confidence 999999975 5899999999999999999999999999999999998 348999999999999999999
Q ss_pred hHHhhhhhhhhccCCc------------ccHHHHHHHhhhhHHHHHhhHHHHHHHHHHHHHhCCCCCCchhhhhhhHhHH
Q 035568 170 IEARFFISLYQEHEPL------------HNKALLKLAKLDFNQVQSLYKIELSEISRWWKDLDFARKLPFARDRVVECYF 237 (518)
Q Consensus 170 ~e~r~yI~~y~~~~~~------------~n~~ll~lAkldFn~~Q~~hq~El~~l~rWwk~~~l~~~l~faRdR~ve~yf 237 (518)
||||+||++|++ ++. +|++||||||||||+||++||+||++++||||++|| .++||||||++||||
T Consensus 403 lear~yI~~Y~~-~~~~i~Kt~yr~~~~~n~~lLelAKlDFN~~Q~~hq~EL~~l~rWwk~~~l-~~l~faRdr~ve~Yf 480 (764)
T 3p5p_A 403 LEARSYIDSYDD-NYVWQRKTLYRMPSLSNSKCLELAKLDFNIVQSLHQEELKLLTRWWKESGM-ADINFTRHRVAEVYF 480 (764)
T ss_dssp HHHHHHHHHCCT-TCCEESSSEECCTTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTST-TTTTCCHHHHHHHHH
T ss_pred HHHHHHHHHhcc-cchhhhcccccccccccHHHHHHHHHHHHHHHHHhHHHhhhhceeHHhcCC-CcCccHHHHHHHHHH
Confidence 999999999998 765 499999999999999999999999999999999999 599999999999999
Q ss_pred HHhccccCcchhHHHHHHHHHhhhhhhhhcccccCCCHHHHHHHHHHhhhcCccccccCChhHHHHHHHHHHHHHHHHHH
Q 035568 238 WIVGVYFEPQYSLARKLLTKVISMTSIIDDIYDVYGIPEELDLFTAAIDRWDVSCIDQLPEYMQTFYVALLDLYKEIEEE 317 (518)
Q Consensus 238 ~~~a~~feP~~s~~Rl~laK~~~l~~i~DD~fD~~gt~eEl~~~t~ai~rWd~~~~~~lpe~mk~~f~al~~~~~ei~~~ 317 (518)
|++| |||+||.+|+++||+++|++++||+||+|||+||++.||+||+|||++++++||+|||+||.+|+++++|++.+
T Consensus 481 w~~~--feP~~s~~R~~~aK~~~l~tviDD~yD~ygT~eEl~~ft~ai~RWD~~~~~~LPeymk~~f~aL~~~~~ei~~~ 558 (764)
T 3p5p_A 481 SSAT--FEPEYSATRIAFTKIGCLQVLFDDMADIFATLDELKSFTEGVKRWDTSLLHEIPECMQTCFKVWFKLMEEVNND 558 (764)
T ss_dssp HTCC--CCGGGHHHHHHHHHHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHTSSTTGGGSCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHh--CCccchHHHHHHHHHHHHHHHHHHHcccCCCHHHHHHHHHHHHHcCchhhhcCchHHHHHHHHHHHHHHHHHHH
Confidence 9999 99999999999999999999999999999999999999999999999999999999999999999999999988
Q ss_pred HHh-cCCcchHHHHHHHHHHHHHHHHHHHhHhcCCCCCChHHHHhhhhcccchhHHHHHHHHhcCCCCchHHHhhccCch
Q 035568 318 LAT-KGWSYRVHYAKEEMKILVHGYHDESKWFHNNYVPTMEEYMRVSLVTSGYSMLTAASFLGMDSVVTKEAFDWVSGKP 396 (518)
Q Consensus 318 ~~~-~~~~~~~~~~k~~~~~~~~a~l~EA~W~~~g~vPt~eEYl~~~~~S~g~~~~~~~~~~~~g~~l~~ev~e~~~~~~ 396 (518)
+.+ +|+ ++++|++++|++++++|++||+|+++||+||+||||+||.+|+|++++++.+++++|+.+|+++++|+..+|
T Consensus 559 ~~~~~g~-~~~~yl~~aw~~l~~ayl~EAkW~~~gyvPT~eEYl~na~vSsg~~~l~~~~~~~~G~~lt~e~~e~~~~~~ 637 (764)
T 3p5p_A 559 VVKVQGR-DMLAHIRKPWELYFNCYVQEREWLEAGYIPTFEEYLKTYAISVGLGPCTLQPILLMGELVKDDVVEKVHYPS 637 (764)
T ss_dssp HHHHHSS-CCHHHHHHHHHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHTCHHHHHHHHHHTSSSCCCGGGHHHHSTTS
T ss_pred HHHhcCc-chHHHHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHhcchhchHHHHHHHHHHHcCCCCcHHHHhhhhhhH
Confidence 776 566 789999999999999999999999999999999999999999999999999999999999999999965669
Q ss_pred HHHHHHhhhhhhccCccchhhhhhcCCCchHHHHHHhhcccCCcccCHHHHHHHHHHHHHHHHHHHHhhccC-CCCCCHH
Q 035568 397 KIIRASTIIGRLMDDIKSHKFEQERGHAASAIECYMKEKEREGVSVTEQEVHEELYKKVGDAWKDINEECLM-PTEVPRP 475 (518)
Q Consensus 397 ~i~~~~~~i~RL~NDI~S~~kE~~~G~~~n~V~cym~e~~~~g~~vS~eeA~~~i~~~i~~~~k~ln~~~l~-~~~~p~~ 475 (518)
+|+++++.|+||+|||+||++|+++|+++|+|+|||+||| | +|+|+|+++++++|+++||+||+++++ ++++|++
T Consensus 638 ~l~~~~~~I~RL~NDi~S~k~E~~rG~~as~V~cYMke~~--g--vSeEeA~~~i~~~Ie~~wKeln~e~l~~~~~~p~~ 713 (764)
T 3p5p_A 638 NMFELVSLSWRLTNDTKTYQAEKARGQQASGIACYMKDNP--G--ATEEDAIKHICRVVDRALKEASFEYFKPSNDIPMG 713 (764)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTTTCCCSHHHHHHHHST--T--CCHHHHHHHHHHHHHHHHHHHHHHHHSCCSSSCHH
T ss_pred HHHHHHHHHHHhhhcccchHHHHhcCCcchHHHHHHHhcC--C--CCHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCHH
Confidence 9999999999999999999999999999999999999996 7 999999999999999999999999997 7789999
Q ss_pred HHHHHHHHHhhhhhhcccCCCCCCCChhHHHHHHHhcccccCC
Q 035568 476 LLMRVLNLSRVIDVIYKEGDGYTHVGQVMKDNIASVLIHPVAI 518 (518)
Q Consensus 476 ~~~~~~n~aR~~~~~Y~~~Dg~t~~~~~~k~~i~~ll~~pi~~ 518 (518)
|+++++|+||++++||+++||||.|+..||++|++||++||++
T Consensus 714 ~~~~~~n~aR~~~~~Y~~~Dg~t~~~~~~k~~i~~ll~~Pi~~ 756 (764)
T 3p5p_A 714 CKSFIFNLRLCVQIFYKFIDGYGIANEEIKDYIRKVYIDPIQV 756 (764)
T ss_dssp HHHHHHHTHHHHHHHSCC-------CCCHHHHHHHHHTCCCCC
T ss_pred HHHHHHHHHHHHHHHhcCCCCCCCCcHHHHHHHHHHHhcCCcc
Confidence 9999999999999999999999998767999999999999974
No 9
>3s9v_A Abietadiene synthase, chloroplastic; alpha bundle/barrel, lyase, isomerase; 2.30A {Abies grandis}
Probab=100.00 E-value=1.5e-143 Score=1207.92 Aligned_cols=483 Identities=33% Similarity=0.601 Sum_probs=458.8
Q ss_pred CcChhhhhHHHHHHHHhCCccccHHHHHHHHHHHHHhcccCcCCC----CCCChhHHHHHHHHhhhcCceechhhhhccc
Q 035568 27 GVDSLSRLKLIDAILRLGVGYQFERELEEALQNLYDAFSNNFYNI----EDNDLYHVALRFRILRQRGYKVSCDIFNKFK 102 (518)
Q Consensus 27 ~~~~~~~l~liD~lqrLGi~~hF~~EI~~~L~~~~~~~~~~~~~~----~~~dl~~~al~FRlLR~hGy~vS~dvf~~F~ 102 (518)
|.|++++|++||+||||||+|||++||+++|+++|++|.++|+.. ...||++|||+|||||||||+||||||++|+
T Consensus 267 P~d~~e~l~lID~LqrLGi~~hF~~EI~~~L~~i~~~~~~~gi~~~~~~~~~Dl~~tAl~FRlLR~~Gy~VS~dvf~~F~ 346 (785)
T 3s9v_A 267 PLDLFERLWAVDTVERLGIDRHFKEEIKEALDYVYSHWDERGIGWARENPVPDIDDTAMGLRILRLHGYNVSSDVLKTFR 346 (785)
T ss_dssp CCHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTCCTTCCCSSTTCSSCCHHHHHHHHHHHHHTTCCCCGGGGGGGB
T ss_pred CCcHHHHHHHHHHHHHcCCccccHHHHHHHHHHHHHHhhhccccccccCCCCCHHHHHHHHHHHHhcCCCCCHHHHHHHH
Confidence 678999999999999999999999999999999999998766533 1359999999999999999999999999999
Q ss_pred cccccccccc---ccchhhhhhHhhhcccCCCCchHHHHHHHHHHhhcc---------------cCcHHHHHHHccCCcc
Q 035568 103 DGKGNFKESL---KTDVSGMLSLYEAAHLVVHGEDILNEAIAFTTAHLQ---------------SSMAPQVIHALRQPLY 164 (518)
Q Consensus 103 d~~g~F~~~~---~~dv~~lL~LyeAs~l~~~gE~iLdea~~ft~~~L~---------------~~l~~~V~~aL~~P~~ 164 (518)
|++|+|++++ .+||+||||||||||+++|||+|||||++||++||+ ++|+++|+|||++|||
T Consensus 347 d~~g~F~~~~~e~~~dv~g~L~LYeAS~l~~~gE~iLdeA~~Ft~~~L~~~~~~~~~~d~~~~~~~L~~eV~~aL~~P~~ 426 (785)
T 3s9v_A 347 DENGEFFCFLGQTQRGVTDMLNVNRCSHVSFPGETIMEEAKLCTERYLRNALENVDAFDKWAFKKNIRGEVEYALKYPWH 426 (785)
T ss_dssp CTTSCBCSSTTCCCCCHHHHHHHHHHHTSCCTTCHHHHHHHHHHHHHHHHHTTTCCTTCTTCSSSCHHHHHHHHHHSCGG
T ss_pred hcCCCeeeccccccccccccHHHHhHhhcCCCCcHHHHHHHHHHHHHHHHHHhccccccccccCCcHHHHHHHHhCCccc
Confidence 9999999876 699999999999999999999999999999999997 2489999999999999
Q ss_pred CCchhhHHhhhhhhhhccCCc------------ccHHHHHHHhhhhHHHHHhhHHHHHHHHHHHHHhCCCCCCchhhhhh
Q 035568 165 KGLPRIEARFFISLYQEHEPL------------HNKALLKLAKLDFNQVQSLYKIELSEISRWWKDLDFARKLPFARDRV 232 (518)
Q Consensus 165 ~~~~r~e~r~yI~~y~~~~~~------------~n~~ll~lAkldFn~~Q~~hq~El~~l~rWwk~~~l~~~l~faRdR~ 232 (518)
+++||||||+||++|++ ++. +|++||||||||||+||++||+||++++||||++|| .++||||||+
T Consensus 427 ~~l~RleaR~yI~~Y~~-~~~~i~Kt~yr~~~~~n~~lLelAKlDFN~~Q~~hq~EL~~lsrWwk~~~l-~~l~faRdr~ 504 (785)
T 3s9v_A 427 KSMPRLEARSYIENYGP-DDVWLGKTVYMMPYISNEKYLELAKLDFNKVQSIHQTELQDLRRWWKSSGF-TDLNFTRERV 504 (785)
T ss_dssp GCCHHHHHHHHHHHCCT-TCCEESSSEECCTTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTT-TSCSSSCCCH
T ss_pred cCchHHHHHHHHHHhcc-cchhhhcccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHcCC-CcCccHHHHH
Confidence 99999999999999998 775 499999999999999999999999999999999999 6999999999
Q ss_pred hHhHHHHhccccCcchhHHHHHHHHHhhhhhhhhcccccCCCHHHHHHHHHHhhhcCccccccCChhHHHHHHHHHHHHH
Q 035568 233 VECYFWIVGVYFEPQYSLARKLLTKVISMTSIIDDIYDVYGIPEELDLFTAAIDRWDVSCIDQLPEYMQTFYVALLDLYK 312 (518)
Q Consensus 233 ve~yf~~~a~~feP~~s~~Rl~laK~~~l~~i~DD~fD~~gt~eEl~~~t~ai~rWd~~~~~~lpe~mk~~f~al~~~~~ 312 (518)
+|||||++|++|||+||.+|+++||++++++++||+||+|||+|||+.||+||+|||++++++||+|||+||.+|+++++
T Consensus 505 ve~Yfw~~~~~feP~~s~~R~~~aK~~~l~tviDD~yD~ygT~eEl~~ft~ai~RWD~~~~~~Lpeymk~~f~aL~~~~n 584 (785)
T 3s9v_A 505 TEIYFSPASFIFEPEFSKCREVYTKTSNFTVILDDLYDAHGSLDDLKLFTESVKRWDLSLVDQMPQQMKICFVGFYNTFN 584 (785)
T ss_dssp HHHHHHHHHHSCSGGGHHHHHHHHHHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHTSSSSGGGSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCccchHHHHHHHHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHcCchhhhcCChhHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHh-cCCcchHHHHHHHHHHHHHHHHHHHhHhcCCCCCChHHHHhhhhcccchhHHHHHHHHhcCCCCchHHHhh
Q 035568 313 EIEEELAT-KGWSYRVHYAKEEMKILVHGYHDESKWFHNNYVPTMEEYMRVSLVTSGYSMLTAASFLGMDSVVTKEAFDW 391 (518)
Q Consensus 313 ei~~~~~~-~~~~~~~~~~k~~~~~~~~a~l~EA~W~~~g~vPt~eEYl~~~~~S~g~~~~~~~~~~~~g~~l~~ev~e~ 391 (518)
|++.++.+ +|+ ++++|++++|++++++|++||+|+++||+||+||||+||++|+|+++++++++++||+.+|+++++|
T Consensus 585 ei~~~~~~~~g~-~~~~ylk~aw~~l~~ayl~EAkW~~~gyvPT~eEYl~na~vS~g~~~l~~~~~~~~G~~lt~e~~e~ 663 (785)
T 3s9v_A 585 DIAKEGRERQGR-DVLGYIQNVWKVQLEAYTKEAEWSEAKYVPSFNEYIENASVSIALGTVVLISALFTGEVLTDEVLSK 663 (785)
T ss_dssp HHHHHHHHHHTS-CCHHHHHHHHHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHTCHHHHHHHHTTCSSSCCCHHHHTT
T ss_pred HHHHHHHHhcCc-cHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHhccccchHHHHHHHHHHHcCCCCCHHHHhc
Confidence 99988777 566 7899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCchHHHHHHhhhhhhccCccchhhhhhcCCCchHHHHHHhhcccCCcccCHHHHHHHHHHHHHHHHHHHHhhccCCCC
Q 035568 392 VSGKPKIIRASTIIGRLMDDIKSHKFEQERGHAASAIECYMKEKEREGVSVTEQEVHEELYKKVGDAWKDINEECLMPTE 471 (518)
Q Consensus 392 ~~~~~~i~~~~~~i~RL~NDI~S~~kE~~~G~~~n~V~cym~e~~~~g~~vS~eeA~~~i~~~i~~~~k~ln~~~l~~~~ 471 (518)
+..+|+|+++++.|+||+|||+||++|+++|+++|+|+|||+||| | +|+|+|+++++++|+++||+||+++++++
T Consensus 664 ~~~~~~l~~~~~~I~RL~NDi~S~k~E~~rG~~as~V~cYMke~~--g--vSeEeA~~~i~~~Ie~~wKeln~e~l~~~- 738 (785)
T 3s9v_A 664 IDRESRFLQLMGLTGRLVNDTKTYQAERGQGEVASAIQCYMKDHP--K--ISEEEALQHVYSVMENALEELNREFVNNK- 738 (785)
T ss_dssp TSTTSHHHHHHHHHHHHHHHHHHHHHHHHHSCCCSHHHHHHHHCT--T--SCHHHHHHHHHHHHHHHHHHHHHHHHHSC-
T ss_pred ccccHHHHHHHHHHHHHhcccchhhHHHhcCCcchHHHHHHHhCC--C--CCHHHHHHHHHHHHHHHHHHHHHHHhcCC-
Confidence 555599999999999999999999999999999999999999997 7 99999999999999999999999999877
Q ss_pred CCHHHHHHHHHHHhhhhhhcccCCCCCCCCh-hHHHHHHHhcccccC
Q 035568 472 VPRPLLMRVLNLSRVIDVIYKEGDGYTHVGQ-VMKDNIASVLIHPVA 517 (518)
Q Consensus 472 ~p~~~~~~~~n~aR~~~~~Y~~~Dg~t~~~~-~~k~~i~~ll~~pi~ 517 (518)
+|++|+++++|++|++++||+++||||.|+. .||++|++||++||.
T Consensus 739 ~p~~~~~~~~n~aR~~~~~Y~~~Dg~t~~~~~~~k~~i~~ll~~Pi~ 785 (785)
T 3s9v_A 739 IPDIYKRLVFETARIMQLFYMQGDGLTLSHDMEIKEHVKNCLFQPVA 785 (785)
T ss_dssp CCHHHHHHHHHHHHHHHHHTCCCC----CHHHHHHHHHHHHHTSCCC
T ss_pred CCHHHHHHHHHHHHHHHHHhcCCCCCCCCChHHHHHHHHHHhcccCC
Confidence 9999999999999999999999999999875 699999999999984
No 10
>3pya_A ENT-copalyl diphosphate synthase, chloroplastic; class I and II terpene cyclase fold, class II diterpene CYCL DXXDD motif; HET: AG8 1PE; 2.25A {Arabidopsis thaliana} PDB: 3pyb_A*
Probab=100.00 E-value=9.6e-109 Score=915.08 Aligned_cols=447 Identities=22% Similarity=0.325 Sum_probs=389.0
Q ss_pred hHHHHHHHHHHHHHHhhcc----CcChhhhhHHHHHHHHhCCccccHHHHHHHHHHHHHhcccCcCCC----CCCChhHH
Q 035568 8 QSQEIEELKEEVRRELLGS----GVDSLSRLKLIDAILRLGVGYQFERELEEALQNLYDAFSNNFYNI----EDNDLYHV 79 (518)
Q Consensus 8 ~~~~~~~lk~~v~~~l~~~----~~~~~~~l~liD~lqrLGi~~hF~~EI~~~L~~~~~~~~~~~~~~----~~~dl~~~ 79 (518)
..+..+-|+..|+++..+. |.|++++|++||+||||||+|||++||+++|+++|++|.++|+.+ ...||++|
T Consensus 219 d~~~l~YL~~~v~k~~g~VP~~yP~d~~e~L~lID~LqRLGIs~hFe~EI~~~L~~i~~~~~~~g~~~~~~~~~~DL~~t 298 (727)
T 3pya_A 219 DSNCLEYLRNAVKRFNGGVPNVFPVDLFEHIWIVDRLQRLGISRYFEEEIKECLDYVHRYWTDNGICWARCSHVQDIDDT 298 (727)
T ss_dssp CHHHHHHHHHHHHHTTTCCCSSCCCHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHHTCCTTCCCSSSSCSCCCHHHH
T ss_pred CHHHHHHHHHHHHHcCCCCCCCCCCcHHHHHHHHHHHHHcCCccccHHHHHHHHHHHHHHhhhcCcccccCCCCCCHHHH
Confidence 3566788999999876543 689999999999999999999999999999999999997766532 13599999
Q ss_pred HHHHHHhhhcCceechhhhhcccccccccccc---cccchhhhhhHhhhcccCCCCchHHHHHHHHHHhhcc--------
Q 035568 80 ALRFRILRQRGYKVSCDIFNKFKDGKGNFKES---LKTDVSGMLSLYEAAHLVVHGEDILNEAIAFTTAHLQ-------- 148 (518)
Q Consensus 80 al~FRlLR~hGy~vS~dvf~~F~d~~g~F~~~---~~~dv~~lL~LyeAs~l~~~gE~iLdea~~ft~~~L~-------- 148 (518)
||+|||||||||+||||||++|+ ++|+|++. +.+|++||||||||||+++|||+|||||++||++||+
T Consensus 299 AL~FRLLRqhGy~VS~DvF~~Fk-~~G~F~~~~~e~~~Dv~glLsLYeAS~l~~~gE~iLdeA~~Ft~~~L~~~~~~~~~ 377 (727)
T 3pya_A 299 AMAFRLLRQHGYQVSADVFKNFE-KEGEFFCFVGQSNQAVTGMFNLYRASQLAFPREEILKNAKEFSYNYLLEKREREEL 377 (727)
T ss_dssp HHHHHHHHHTTCCCCGGGGGGGE-ETTEECSSTTCCCCCHHHHHHHHHHHTTCCTTCHHHHHHHHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHhCCCCCCHHHHHhcc-CCCcccccccccccccHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHHHhcCCc
Confidence 99999999999999999999999 88999954 3689999999999999999999999999999999997
Q ss_pred -------cCcHHHHHHHccCCccCCchhhHHhhhhhhhhccCCc-------------ccHHHHHHHhhhhHHHHHhhHHH
Q 035568 149 -------SSMAPQVIHALRQPLYKGLPRIEARFFISLYQEHEPL-------------HNKALLKLAKLDFNQVQSLYKIE 208 (518)
Q Consensus 149 -------~~l~~~V~~aL~~P~~~~~~r~e~r~yI~~y~~~~~~-------------~n~~ll~lAkldFn~~Q~~hq~E 208 (518)
++|+++|+|||++|||+++||+|||+||++|++ +++ +|++||||||||||+||++||+|
T Consensus 378 ~dkw~~~~~L~~~V~~aL~~P~~~~l~RleaR~yI~~Y~~-~~~~~i~Kt~yr~~~~~n~~lLelAKlDFN~~Q~~hq~E 456 (727)
T 3pya_A 378 IDKWIIMKDLPGEIGFALEIPWYASLPRVETRFYIDQYGG-ENDVWIGKTLYRMPYVNNNGYLELAKQDYNNCQAQHQLE 456 (727)
T ss_dssp CCSSEECSCHHHHHHHHHHSCGGGCCHHHHHHHHHHHCCG-GGCEEESSSEECCTTTSCHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccccccCCcHHHHHHHHhcCcHhcCChHHHHHHHHHHhcc-CcchhhhhhhccccccccHHHHHHHHHhHHHHHHHhHHH
Confidence 248999999999999999999999999999997 554 69999999999999999999999
Q ss_pred HHHHHHHHHHhCCCCCCchhhhhhhHhHHHHhccccCcchhHHHHHHHHHhhhhhhhhcccccCCCHHHHHHHHHHhhhc
Q 035568 209 LSEISRWWKDLDFARKLPFARDRVVECYFWIVGVYFEPQYSLARKLLTKVISMTSIIDDIYDVYGIPEELDLFTAAIDRW 288 (518)
Q Consensus 209 l~~l~rWwk~~~l~~~l~faRdR~ve~yf~~~a~~feP~~s~~Rl~laK~~~l~~i~DD~fD~~gt~eEl~~~t~ai~rW 288 (518)
|++++||||++|| .+|||||||++|||||++|++|||+||.+|+++||.+++++++||+||+|| |||++||+||+||
T Consensus 457 L~~lsrWwk~~~l-~~l~faRdr~ve~Yfw~~~~~feP~~s~~R~~~aK~~~l~tviDD~yD~yG--eEl~~ft~av~rw 533 (727)
T 3pya_A 457 WDIFQKWYEENRL-SEWGVRRSELLECYYLAAATIFESERSHERMVWAKSSVLVKAISSSFGESS--DSRRSFSDQFHEY 533 (727)
T ss_dssp HHHHHHHHHHTTG-GGGTCCHHHHHHHHHHHHTTSCCGGGHHHHHHHHHHHHHHHHHHHHHCSSH--HHHHHHHHHHHHH
T ss_pred HhhhheeHHhcCc-ccCCchhhHHHHHHHHHHhccCCchhHHHHHHHHHHHHHHHHHHHHHhcch--HHHHHHHHHHHhc
Confidence 9999999999999 579999999999999999999999999999999999999999999999999 9999999999999
Q ss_pred Ccc---------cccc---CChh--HHHHHHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHHHHhHhcCCCCC
Q 035568 289 DVS---------CIDQ---LPEY--MQTFYVALLDLYKEIEEELATKGWSYRVHYAKEEMKILVHGYHDESKWFHNNYVP 354 (518)
Q Consensus 289 d~~---------~~~~---lpe~--mk~~f~al~~~~~ei~~~~~~~~~~~~~~~~k~~~~~~~~a~l~EA~W~~~g~vP 354 (518)
|.+ +.+. +|+| ||+||.||+|+++|++.++.+.+|.++++|++++|.++++++++|++ +
T Consensus 534 d~~~~~~~~~~~~~~~~~~~p~~~~mk~~f~aL~~t~nei~~~~~k~qg~~v~~~l~~~W~~~l~s~~~Ea~-~------ 606 (727)
T 3pya_A 534 IANARRSDHHFNDRNMRLDRPGSVQASRLAGVLIGTLNQMSFDLFMSHGRDVNNLLYLSWGDWMEKWKLYGD-E------ 606 (727)
T ss_dssp C-------------------CHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHSS-C------
T ss_pred ccccccccccccchhhcccCCCcHHHHHHHHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHHhcc-c------
Confidence 974 3333 2877 89999999999999997776655557899999999999999999998 2
Q ss_pred ChHHHHhhhhcccchhHHHHHHHHhcCCCCchHHHhhccCchHHHHHHhhhhhhccCccchhhhhhcCCCchHHHHHHhh
Q 035568 355 TMEEYMRVSLVTSGYSMLTAASFLGMDSVVTKEAFDWVSGKPKIIRASTIIGRLMDDIKSHKFEQERGHAASAIECYMKE 434 (518)
Q Consensus 355 t~eEYl~~~~~S~g~~~~~~~~~~~~g~~l~~ev~e~~~~~~~i~~~~~~i~RL~NDI~S~~kE~~~G~~~n~V~cym~e 434 (518)
+| +. .++.++..+ .|..+++ ++.+ +.|..|.++++.|+||+||+.+|++|+
T Consensus 607 --~E----Ae--llv~~I~l~----sG~~l~e-~l~~-~ey~~L~~ltn~icrllndl~~~~~E~--------------- 657 (727)
T 3pya_A 607 --GE----GE--LMVKMIILM----KNNDLTN-FFTH-THFVRLAEIINRICLPRQYLKARRNDE--------------- 657 (727)
T ss_dssp --CH----HH--HHHHHHHHH----SSSCGGG-GGSS-HHHHHHHHHHHHHSCCCC------CHH---------------
T ss_pred --cc----ee--eeeeeeecC----CCcchHh-hccC-hhHHHHHHHHHHHhHHHhHHHHHHHHH---------------
Confidence 34 21 333433333 2888998 8887 889999999999999999999999966
Q ss_pred cccCCcccCHHHHHHHHHHHHHHHHHHHHhhccCCC--CCCHHHHHHHHHHHhhhhhhcccCCCCCCCChhHHHHHHHhc
Q 035568 435 KEREGVSVTEQEVHEELYKKVGDAWKDINEECLMPT--EVPRPLLMRVLNLSRVIDVIYKEGDGYTHVGQVMKDNIASVL 512 (518)
Q Consensus 435 ~~~~g~~vS~eeA~~~i~~~i~~~~k~ln~~~l~~~--~~p~~~~~~~~n~aR~~~~~Y~~~Dg~t~~~~~~k~~i~~ll 512 (518)
++++.+.|+..|++|++.+++++ .+|++| |+++|++.||.. ||++|. |..+|.+||
T Consensus 658 -------------~~~~~~~IE~~mqEL~~lVl~~~~~~ip~~~-----tf~~V~ksFYy~--ay~~p~--i~~hI~kVl 715 (727)
T 3pya_A 658 -------------KEKTIKSMEKEMGKMVELALSESDTFRDVSI-----TFLDVAKAFYYF--ALCGDH--LQTHISKVL 715 (727)
T ss_dssp -------------HHHHHHHHHHHHHHHHHHHHSCCTTTHHHHH-----HHHHHHHHHHHH--HHHTTS--CHHHHHHHH
T ss_pred -------------HHHHHHHHHHHHHHHHHHHhccCCCCCCCcc-----cHHHHHHHHHhh--hcCCHH--HHHHHHHHH
Confidence 11466779999999999999854 699999 999999999986 999985 999999999
Q ss_pred ccccC
Q 035568 513 IHPVA 517 (518)
Q Consensus 513 ~~pi~ 517 (518)
++||.
T Consensus 716 ~~~~~ 720 (727)
T 3pya_A 716 FQKVG 720 (727)
T ss_dssp HSCCC
T ss_pred cCccc
Confidence 99984
No 11
>1ps1_A Pentalenene synthase; antibiotic biosynthesis, sesquiterpene cyclase, lyase; 2.60A {Streptomyces SP} SCOP: a.128.1.4 PDB: 1hm7_A 1hm4_A
Probab=100.00 E-value=9.8e-52 Score=425.70 Aligned_cols=251 Identities=17% Similarity=0.165 Sum_probs=227.7
Q ss_pred HHhhHHHHHHH-HHHHHHhCCCCCCchhhhhhhHhHHHHhccccCcchhHHHH-HHHHHhhhhhhhhcccccC--CCHHH
Q 035568 202 QSLYKIELSEI-SRWWKDLDFARKLPFARDRVVECYFWIVGVYFEPQYSLARK-LLTKVISMTSIIDDIYDVY--GIPEE 277 (518)
Q Consensus 202 Q~~hq~El~~l-~rWwk~~~l~~~l~faRdR~ve~yf~~~a~~feP~~s~~Rl-~laK~~~l~~i~DD~fD~~--gt~eE 277 (518)
++.|.+|++.. ++||+++|+.+ .||+|+|++++|||.++++++|+++.+|+ ++||+++|+|++||+||.+ ||++|
T Consensus 15 ~~p~~~e~~~~~~~W~~~~~l~~-~~~~r~r~~~~~~~~~~~~~~P~~~~~rl~~~ak~~~~~~~~DD~~D~~~~~~~ee 93 (337)
T 1ps1_A 15 QSPDHARAEAEQLAWPRSLGLIR-SDAAAERHLRGGYADLASRFYPHATGADLDLGVDLMSWFFLFDDLFDGPRGENPED 93 (337)
T ss_dssp CCTTHHHHHHSTTHHHHHTTSCC-SHHHHHHHHTTCHHHHHHHHCTTCCTHHHHHHHHHHHHHHHHHHTTSSGGGGCHHH
T ss_pred CCCCHHHHHHHHHHHHHHcCCCC-CHHHHHHHHhCCHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHhhccCCcCCCCHHH
Confidence 45566677655 67999999964 69999999999999999999999999999 9999999999999999998 69999
Q ss_pred HHHHHHHhhhcCccccccCChhHHHHHHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHHHHhHhcCCCCC-Ch
Q 035568 278 LDLFTAAIDRWDVSCIDQLPEYMQTFYVALLDLYKEIEEELATKGWSYRVHYAKEEMKILVHGYHDESKWFHNNYVP-TM 356 (518)
Q Consensus 278 l~~~t~ai~rWd~~~~~~lpe~mk~~f~al~~~~~ei~~~~~~~~~~~~~~~~k~~~~~~~~a~l~EA~W~~~g~vP-t~ 356 (518)
++.|++++.+|+.+ .+|+++++++.++.+++++++..+. .....++++.|+++++++++||+|+.+|++| |+
T Consensus 94 ~~~~~~~l~~~~~~---~~p~~~~~~~~~l~d~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~Ea~~~~~~~~P~s~ 166 (337)
T 1ps1_A 94 TKQLTDQVAAALDG---PLPDTAPPIAHGFADIWRRTCEGMT----PAWCARSARHWRNYFDGYVDEAESRFWNAPCDSA 166 (337)
T ss_dssp HHHHHHHHHGGGTS---CCCTTSCHHHHHHHHHHHHHHTTSC----HHHHHHHHHHHHHHHHHHHHHHTTC-------CH
T ss_pred HHHHHHHHHHHcCC---CCCCCCChHHHHHHHHHHHHhccCC----HHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCH
Confidence 99999999999864 4789999999999999999976532 3457899999999999999999999999999 99
Q ss_pred HHHHhhhhcccchhHHHHHHHHhcCCCCchHHHhhccCchHHHHHHhhhhhhccCccchhhhhhcCCCchHHHHHHhhcc
Q 035568 357 EEYMRVSLVTSGYSMLTAASFLGMDSVVTKEAFDWVSGKPKIIRASTIIGRLMDDIKSHKFEQERGHAASAIECYMKEKE 436 (518)
Q Consensus 357 eEYl~~~~~S~g~~~~~~~~~~~~g~~l~~ev~e~~~~~~~i~~~~~~i~RL~NDI~S~~kE~~~G~~~n~V~cym~e~~ 436 (518)
+|||++|++|+|++++++++++++|..+|++++++ +.+++|+++++.++||+|||+||+||+++|+++|+|.|||+++
T Consensus 167 eEYl~~r~~s~g~~~~~~~~~~~~g~~l~~~~~~~-p~~~~l~~~~~~i~rL~NDl~S~~kE~~~G~~~n~V~~~m~~~- 244 (337)
T 1ps1_A 167 AQYLAMRRHTIGVQPTVDLAERAGRFEVPHRVFDS-AVMSAMLQIAVDVNLLLNDIASLEKEEARGEQNNMVMILRREH- 244 (337)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHTCCCCHHHHTS-HHHHHHHHHHHHHHHHHHHHHTHHHHHHTTCCCSHHHHHHHHH-
T ss_pred HHHHHHcccccchhhHHHHHHHHcCCCCCHHHHhC-hHHHHHHHHHHHHHHHHHHHhhHHHHHhcCCcchHHHHHHHHc-
Confidence 99999999999999999999999999999999998 7778999999999999999999999999999999999999999
Q ss_pred cCCcccCHHHHHHHHHHHHHHHHHHHHhhc
Q 035568 437 REGVSVTEQEVHEELYKKVGDAWKDINEEC 466 (518)
Q Consensus 437 ~~g~~vS~eeA~~~i~~~i~~~~k~ln~~~ 466 (518)
| +|+|+|++++.++|+++||+||++.
T Consensus 245 --g--~s~eeA~~~v~~~i~~~~~~~~~~~ 270 (337)
T 1ps1_A 245 --G--WSKSRSVSHMQNEVRARLEQYLLLE 270 (337)
T ss_dssp --C--CCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred --C--CCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9 9999999999999999999999987
No 12
>1di1_A Aristolochene synthase; sesquiterpene cyclase, isoprenoid biosynthesis, lyase; 2.50A {Penicillium roqueforti} SCOP: a.128.1.4 PDB: 1dgp_A
Probab=100.00 E-value=2.9e-49 Score=400.43 Aligned_cols=242 Identities=14% Similarity=0.093 Sum_probs=221.2
Q ss_pred hhHHHHHHH-HHHHHHhCCCCCCchhhhhhhHhHHHHhccccCcchhHHHH-HHHHHhhhhhhhhcccccCCCHHHHHHH
Q 035568 204 LYKIELSEI-SRWWKDLDFARKLPFARDRVVECYFWIVGVYFEPQYSLARK-LLTKVISMTSIIDDIYDVYGIPEELDLF 281 (518)
Q Consensus 204 ~hq~El~~l-~rWwk~~~l~~~l~faRdR~ve~yf~~~a~~feP~~s~~Rl-~laK~~~l~~i~DD~fD~~gt~eEl~~~ 281 (518)
-|.+|++.. .+||+++|+. +.||+|+|++++|||.+++++.|+++.+|+ ++||+++|+|++||+||. |+.+|++.|
T Consensus 13 P~~~~~~~~~~~W~~~~~l~-~~~~~r~r~~~~~~~~~~~~~~P~~~~~rl~~~~k~~~~~~~~DD~~D~-~~~~e~~~~ 90 (300)
T 1di1_A 13 PRVKEVQDEVDGYFLENWKF-PSFKAVRTFLDAKFSEVTCLYFPLALDDRIHFACRLLTVLFLIDDVLEH-MSFADGEAY 90 (300)
T ss_dssp TTHHHHHHHHHHHHHHHSCC-SSHHHHHHHHHHCHHHHHHHHCTTSCTTTHHHHHHHHHHHHHHHHHHHH-SCHHHHHHH
T ss_pred cCHHHHHHHHHHHHHHcCCC-CCHHHHHHHHhcCcchhhhhcCCCCCHHHHHHHHHHHHHHHHHHhcccc-CCHHHHHHH
Confidence 356666665 6777999996 579999999999999998888899999999 999999999999999999 789999999
Q ss_pred HHHhhhcCccccccCChhHHHHHHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHHHHhHhcCCCCCChHHHHh
Q 035568 282 TAAIDRWDVSCIDQLPEYMQTFYVALLDLYKEIEEELATKGWSYRVHYAKEEMKILVHGYHDESKWFHNNYVPTMEEYMR 361 (518)
Q Consensus 282 t~ai~rWd~~~~~~lpe~mk~~f~al~~~~~ei~~~~~~~~~~~~~~~~k~~~~~~~~a~l~EA~W~~~g~vPt~eEYl~ 361 (518)
++++.||+.+ +.+|++|++++.++++++++++..++ .+.++.|+.++++++ ||+|+..|++||++|||+
T Consensus 91 ~~~~~~~~~~--~~lp~~~~~~~~~l~d~~~~~~~~~~--------~~~~~~~~~~~~~~~-ea~~~~~~~~Ps~eeYl~ 159 (300)
T 1di1_A 91 NNRLIPISRG--DVLPDRTKPEEFILYDLWESMRAHDA--------ELANEVLEPTFVFMR-AQTDRARLSIHELGHYLE 159 (300)
T ss_dssp HHHHHHHHHT--SSCCCTTCHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHH-TTTCCCCCCCCSHHHHHH
T ss_pred HHHHHHHccC--CCCCCCccHHHHHHHHHHHHHHhhCh--------HHHHHHHHHHHHHHH-HHhccccCCCCCHHHHHH
Confidence 9999999764 46899999999999999999987652 245677999999997 899999999999999999
Q ss_pred hhhcccchhHHHHHHHHhcCCCCchHHHhhccCchHHHHHHhhhhhhccCccchhhhhhcCC--------CchHHHHHHh
Q 035568 362 VSLVTSGYSMLTAASFLGMDSVVTKEAFDWVSGKPKIIRASTIIGRLMDDIKSHKFEQERGH--------AASAIECYMK 433 (518)
Q Consensus 362 ~~~~S~g~~~~~~~~~~~~g~~l~~ev~e~~~~~~~i~~~~~~i~RL~NDI~S~~kE~~~G~--------~~n~V~cym~ 433 (518)
+|++|+|++++++++++++|..+|+++++ ..++|+++++.++||+|||+||+||+++|+ ++|+|.|||+
T Consensus 160 ~r~~s~g~~~~~~~~~~~~g~~l~~e~~~---~~~~l~~~~~~~~~l~NDl~S~~kE~~~g~~~h~~~~~~~n~V~~~m~ 236 (300)
T 1di1_A 160 YREKDVGKALLSALMRFSMGLRLSADELQ---DMKALEANCAKQLSVVNDIYSYDKEEEASRTGHKEGAFLCSAVKVLAE 236 (300)
T ss_dssp HHHTCHHHHHHHHHHHHHHTCCCCHHHHH---TTHHHHHHHHHHHHHHHHHHHTTTTCCC----------CCCHHHHHHH
T ss_pred HHhhhccHHHHHHHHHHHcCCCCCHHHHH---HHHHHHHHHHHHHHHHhhhHHHHHHHHhhccccccccccchhHHHHHH
Confidence 99999999999999999999999999999 369999999999999999999999999999 7899999999
Q ss_pred hcccCCcccCHHHHHHHHHHHHHHHHHHHHhhc
Q 035568 434 EKEREGVSVTEQEVHEELYKKVGDAWKDINEEC 466 (518)
Q Consensus 434 e~~~~g~~vS~eeA~~~i~~~i~~~~k~ln~~~ 466 (518)
++ | +|+|+|++++.++|+++|+++|+..
T Consensus 237 ~~---g--~s~eeA~~~~~~~i~~~~~~~~~~~ 264 (300)
T 1di1_A 237 ES---K--LGIPATKRVLWSMTREWETVHDEIV 264 (300)
T ss_dssp HH---T--CCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred Hc---C--CCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99 9 9999999999999999999999865
No 13
>3bny_A Aristolochene synthase; sesquiterpene cyclase, isoprenoid, farnesyl diphosphate, magnesium, cyclization, lyase; HET: FPF; 1.89A {Aspergillus terreus} PDB: 2e4o_A 2oa6_A* 3bnx_A* 3cke_A*
Probab=100.00 E-value=5.2e-48 Score=395.15 Aligned_cols=247 Identities=14% Similarity=0.098 Sum_probs=220.5
Q ss_pred HHHHHhhHHHHHHH-HHHHHHhCCCCCCchhhhhhhHhHHHHhccccCcchhHHHH-HHHHHhhhhhhhhcccccCCCHH
Q 035568 199 NQVQSLYKIELSEI-SRWWKDLDFARKLPFARDRVVECYFWIVGVYFEPQYSLARK-LLTKVISMTSIIDDIYDVYGIPE 276 (518)
Q Consensus 199 n~~Q~~hq~El~~l-~rWwk~~~l~~~l~faRdR~ve~yf~~~a~~feP~~s~~Rl-~laK~~~l~~i~DD~fD~~gt~e 276 (518)
..-...|.+|++.. .+||+++|+..+ ||+|+|++++|||.+++++.|+++.+|+ ++||+++|+|++||+||. |+++
T Consensus 22 p~~~~p~~~e~~~~~~~W~~~~~l~~~-~~~r~r~~~~~~~~~~~~~~P~~~~~rl~~~ak~~~~~~~~DD~~D~-~~~~ 99 (320)
T 3bny_A 22 QPLCHPLVEEVSKEVDGYFLQHWNFPN-EKARKKFVAAGFSRVTCLYFPKALDDRIHFACRLLTVLFLIDDLLEY-MSFE 99 (320)
T ss_dssp CCCCCTTHHHHHHHHHHHHHHHSCCSS-HHHHHHHHHHCHHHHHHHHCTTSCTTTHHHHHHHHHHHHHHHHHHTT-SCHH
T ss_pred CCCCCcCHHHHHHHHHHHHHHcCCCCC-hHHHHHHHhcCchhhHhhhCCCCCHHHHHHHHHHHHHHHHhhccccc-CChh
Confidence 33345567777666 667799999755 9999999999999998888899999999 999999999999999999 8899
Q ss_pred HHHHHHHHhhhcCccccccCChhHHHHHHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHHHHhHhcCCCCCCh
Q 035568 277 ELDLFTAAIDRWDVSCIDQLPEYMQTFYVALLDLYKEIEEELATKGWSYRVHYAKEEMKILVHGYHDESKWFHNNYVPTM 356 (518)
Q Consensus 277 El~~~t~ai~rWd~~~~~~lpe~mk~~f~al~~~~~ei~~~~~~~~~~~~~~~~k~~~~~~~~a~l~EA~W~~~g~vPt~ 356 (518)
|++.|++++.+|+.+ +.+|++|++++.++++++++++... + .+.++.|+.++ ++++|++|+.+|++||+
T Consensus 100 e~~~~~~~l~~~~~~--~~~p~~~~~~~~al~d~~~e~~~~~-~-------~~~~~~~~~~~-~~~~e~~~~~~~~~Ps~ 168 (320)
T 3bny_A 100 EGSAYNEKLIPISRG--DVLPDRSIPVEYIIYDLWESMRAHD-R-------EMADEILEPVF-LFMRAQTDRTRARPMGL 168 (320)
T ss_dssp HHHHHHHHHHHHHHT--SSCCCTTSHHHHHHHHHHHHHHHHH-H-------HHHHHTHHHHH-HHHHHTSCCCCCCCCCH
T ss_pred hHHHHHHHHHHHhcC--CCCCCCcCHHHHHHHHHHHHHHhhC-H-------HHHHHHHHHHH-HHHHHHhhhccCCCCCH
Confidence 999999999999864 4679999999999999999998664 2 23455577777 59999999999999999
Q ss_pred HHHHhhhhcccchhHHHHHHHHhcCCCCchHHHhhccCchHHHHHHhhhhhhccCccchhhhhhcCC--------CchHH
Q 035568 357 EEYMRVSLVTSGYSMLTAASFLGMDSVVTKEAFDWVSGKPKIIRASTIIGRLMDDIKSHKFEQERGH--------AASAI 428 (518)
Q Consensus 357 eEYl~~~~~S~g~~~~~~~~~~~~g~~l~~ev~e~~~~~~~i~~~~~~i~RL~NDI~S~~kE~~~G~--------~~n~V 428 (518)
+|||++|++|+|++++++++++++|..+|+++++. +++|+++++.++||+|||+||+||+++|+ ++|+|
T Consensus 169 eeYl~~r~~s~g~~~~~~~~~~~~g~~l~~e~~~~---~~~l~~~~~~~~~L~NDl~S~~kE~~~g~~~~~~~~~~~N~V 245 (320)
T 3bny_A 169 GGYLEYRERDVGKELLAALMRFSMGLKLSPSELQR---VREIDANCSKHLSVVNDIYSYEKELYTSKTAHSEGGILCTSV 245 (320)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHTCCCCHHHHHH---THHHHHHHHHHHHHHHHHHHHHHHCC-----------CCSHH
T ss_pred HHHHHHhhhcccHHHHHHHHHHHcCCCCCHHHHHH---HHHHHHHHHHHHHHhcccchhHHHHHhhcccccccccccchH
Confidence 99999999999999999999999999999999994 69999999999999999999999999998 78999
Q ss_pred HHHHhhcccCCcccCHHHHHHHHHHHHHHHHHHHHhhc
Q 035568 429 ECYMKEKEREGVSVTEQEVHEELYKKVGDAWKDINEEC 466 (518)
Q Consensus 429 ~cym~e~~~~g~~vS~eeA~~~i~~~i~~~~k~ln~~~ 466 (518)
.|||+++ | +|+|+|++++.+++++.|+++|+..
T Consensus 246 ~~~m~~~---g--~s~eeA~~~~~~~i~~~~~~~~~l~ 278 (320)
T 3bny_A 246 QILAQEA---D--VTAEAAKRVLFVMCREWELRHQLLV 278 (320)
T ss_dssp HHHHHHH---T--CCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHc---C--CCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999 9 9999999999999999999999865
No 14
>3kb9_A EPI-isozizaene synthase; terpenoid cyclase, alpha-helical fold, farnesyl diphosphate, metal-binding, lyase, magnesium; HET: BTM; 1.60A {Streptomyces coelicolor} PDB: 3kbk_A 3lgk_A 3lg5_A*
Probab=100.00 E-value=5.6e-46 Score=390.19 Aligned_cols=245 Identities=10% Similarity=0.003 Sum_probs=225.1
Q ss_pred HHHHHHHHHhCCCCCCchhhhhhhHhHHHHhccccCcchhHHHH-HHHHHhhhhhhhhccccc--CC-CHHHHHHHHHHh
Q 035568 210 SEISRWWKDLDFARKLPFARDRVVECYFWIVGVYFEPQYSLARK-LLTKVISMTSIIDDIYDV--YG-IPEELDLFTAAI 285 (518)
Q Consensus 210 ~~l~rWwk~~~l~~~l~faRdR~ve~yf~~~a~~feP~~s~~Rl-~laK~~~l~~i~DD~fD~--~g-t~eEl~~~t~ai 285 (518)
+++.+||+++|+. .-+++|+|+++++||.+++++.|+++..|+ ++||+++|+|++||+||. +| ++++++.|++++
T Consensus 64 ~~~~~W~~~~gl~-~~~~~r~r~~~~~~~~laa~~~P~as~erL~l~a~~~~w~f~~DD~~D~~~~g~~~~~~~~~~~~l 142 (382)
T 3kb9_A 64 ETTRTWLLEKRLM-PADKVEEYADGLCYTDLMAGYYLGAPDEVLQAIADYSAWFFVWDDRHDRDIVHGRAGAWRRLRGLL 142 (382)
T ss_dssp HHHHHHHHHTTSS-CHHHHHHHHHHHCHHHHHHTTSTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCC-CCHHHHHHHHhCCHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhhcccccccccCHHHHHHHHHHH
Confidence 3568999999995 447899999999999999999999999999 999999999999999996 56 999999999999
Q ss_pred hhcCccccccCChhHHHHHHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHHHHhHhcCCCCCChHHHHhhhhc
Q 035568 286 DRWDVSCIDQLPEYMQTFYVALLDLYKEIEEELATKGWSYRVHYAKEEMKILVHGYHDESKWFHNNYVPTMEEYMRVSLV 365 (518)
Q Consensus 286 ~rWd~~~~~~lpe~mk~~f~al~~~~~ei~~~~~~~~~~~~~~~~k~~~~~~~~a~l~EA~W~~~g~vPt~eEYl~~~~~ 365 (518)
.++-.. ...+|++++++++++.+++++++..+.+ ....+++++|++++++|++||+|+.+|++||++|||++|++
T Consensus 143 ~~~l~~-~~~~p~~~~p~~~al~dl~~~~~~~~~~----~~~~r~~~~~~~~~~a~l~Ea~w~~~g~vPs~eEYl~~r~~ 217 (382)
T 3kb9_A 143 HTALDS-PGDHLHHEDTLVAGFADSVRRLYAFLPA----TWNARFARHFHTVIEAYDREFHNRTRGIVPGVEEYLELRRL 217 (382)
T ss_dssp HHHHHS-CGGGTTCSSHHHHHHHHHHHHHTTSSCH----HHHHHHHHHHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHHH
T ss_pred HHHhcC-CCCCCCCCChHHHHHHHHHHHHHccCCH----HHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHhh
Confidence 987211 2235889999999999999999754433 24789999999999999999999999999999999999999
Q ss_pred ccchhHHHHHHHHhcCCCCchHHHhhccCchHHHHHHhhhhhhccCccchhhhhhcCCCchHHHHHHhhcccCCcccCHH
Q 035568 366 TSGYSMLTAASFLGMDSVVTKEAFDWVSGKPKIIRASTIIGRLMDDIKSHKFEQERGHAASAIECYMKEKEREGVSVTEQ 445 (518)
Q Consensus 366 S~g~~~~~~~~~~~~g~~l~~ev~e~~~~~~~i~~~~~~i~RL~NDI~S~~kE~~~G~~~n~V~cym~e~~~~g~~vS~e 445 (518)
|+|+.++++++++++|..+|++++++ +.+++|++++++++||+|||+||+||+++|+++|+|.|||+++ | +|+|
T Consensus 218 s~g~~~~~~l~~~~~g~~l~~~~~~~-p~~~~l~~~~~~i~rL~NDi~S~~kE~~~G~~~N~V~~~m~~~---g--~s~e 291 (382)
T 3kb9_A 218 TFAHWIWTDLLEPSSGCELPDAVRKH-PAYRRAALLSQEFAAWYNDLCSLPKEIAGDEVHNLGISLITHH---S--LTLE 291 (382)
T ss_dssp HTTHHHHHHHHHHHHTCCCCHHHHTS-HHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCSHHHHHHHHS---C--CCHH
T ss_pred hcCHHHHHHHHHHHcCCCCCHHHHhC-hHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccHHHHHHHcC---C--CCHH
Confidence 99999999999999999999999998 7889999999999999999999999999999999999999999 9 9999
Q ss_pred HHHHHHHHHHHHHHHHHHhhc
Q 035568 446 EVHEELYKKVGDAWKDINEEC 466 (518)
Q Consensus 446 eA~~~i~~~i~~~~k~ln~~~ 466 (518)
+|++++.+||+++||+||+..
T Consensus 292 eA~~~v~~~i~~~~k~~~~~~ 312 (382)
T 3kb9_A 292 EAIGEVRRRVEECITEFLAVE 312 (382)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999843
No 15
>3v1v_A 2-MIB synthase, 2-methylisoborneol synthase; class I terpenoid cyclase fold, DDXXXXD motif, NDXXSXXXE MOT methylisoborneol biosynthesis; HET: GST; 1.80A {Streptomyces coelicolor} PDB: 3v1x_A*
Probab=100.00 E-value=4.8e-33 Score=295.45 Aligned_cols=243 Identities=13% Similarity=0.112 Sum_probs=190.2
Q ss_pred HHHHHHHHHhCCCCCCchhhhhhhHh-HHHHhccccCcch-hHHHH-HHHHHhhhhhhhhcc-cccCC-CHHHH-HHHHH
Q 035568 210 SEISRWWKDLDFARKLPFARDRVVEC-YFWIVGVYFEPQY-SLARK-LLTKVISMTSIIDDI-YDVYG-IPEEL-DLFTA 283 (518)
Q Consensus 210 ~~l~rWwk~~~l~~~l~faRdR~ve~-yf~~~a~~feP~~-s~~Rl-~laK~~~l~~i~DD~-fD~~g-t~eEl-~~~t~ 283 (518)
+++..|..+.++... +-.|.++..+ |-..+|.+| |.. +..|+ +.+||+.|+|++||. +|..| +.+.+ ..+..
T Consensus 133 ~~~~~W~~~~~~l~~-~~~~~~~~~~~~~llaa~~y-P~A~~~e~L~l~ad~~~W~F~~DD~~~D~~g~s~~~~~~~l~~ 210 (433)
T 3v1v_A 133 RRIKRWAEDEVQLYP-EEWEGQFDGFSVGRYMVGCH-PDAPTVDHLMLATRLMVAENAVDDCYCEDHGGSPVGLGGRLLL 210 (433)
T ss_dssp HHHHHHHHHTSCCCC-----CCSCHHHHHHHHHHHC-TTCSSHHHHHHHHHHHHHHHHHHHHHTC----CCTTHHHHHHH
T ss_pred HHHHHHHHHcCCCCC-HHHHHHHHhcCHHHHHHHhC-CCCCCHHHHHHHHHHHHHHHHHhhhhhhccCcchhhhHHHHHH
Confidence 577889999876433 2246777766 566666677 999 78888 999999999999999 59855 43321 12222
Q ss_pred ---HhhhcCccccccCCh-----hHHHHHHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHHHHhHhcCCCCCC
Q 035568 284 ---AIDRWDVSCIDQLPE-----YMQTFYVALLDLYKEIEEELATKGWSYRVHYAKEEMKILVHGYHDESKWFHNNYVPT 355 (518)
Q Consensus 284 ---ai~rWd~~~~~~lpe-----~mk~~f~al~~~~~ei~~~~~~~~~~~~~~~~k~~~~~~~~a~l~EA~W~~~g~vPt 355 (518)
++..... ..+.-|. .-.++..+++++++++.+.+.+ ....++++.|++++++|++||+|+..|++||
T Consensus 211 a~~~~d~l~~-~~~g~p~~~~~~~~dp~~~al~d~~~~l~~~a~~----~q~~r~~~~~~~~~~a~l~EA~W~~~g~vPs 285 (433)
T 3v1v_A 211 AHTAIDHFHS-TAEYTPTWQASLAADAPRRAYDSAMGYFVRAATP----SQSDRYRHDMARLHLGYLAEGAWAQTGHVPE 285 (433)
T ss_dssp HHTTTSCCCC-CTTTHHHHHHHTTSSHHHHHHHHHHHHHHHHSCH----HHHHHHHHHHHHHHHHHHHHHHHHHHTCCCC
T ss_pred HHHHHHhhhc-ccCCCCccccccCCchHHHHHHHHHHHHHhhcCH----HHHHHHHHHHHHHHHHHHHHHHHHhcCCCCC
Confidence 2222110 0110010 0124578999999999765443 3488999999999999999999999999999
Q ss_pred hHHHHhhhhcccchhHHHHHHHHhcCCCCchHHHhhccCchHHHHHHhhhhhhccCccchhhhhhcC-CCchHHHHHHhh
Q 035568 356 MEEYMRVSLVTSGYSMLTAASFLGMDSVVTKEAFDWVSGKPKIIRASTIIGRLMDDIKSHKFEQERG-HAASAIECYMKE 434 (518)
Q Consensus 356 ~eEYl~~~~~S~g~~~~~~~~~~~~g~~l~~ev~e~~~~~~~i~~~~~~i~RL~NDI~S~~kE~~~G-~~~n~V~cym~e 434 (518)
++|||++|++| |+.++++++.+++|..+|++++++ +.+++|++++++++||+|||+||+||+++| +++|+|.|||++
T Consensus 286 leEYl~~R~~s-g~~p~~~l~e~~~g~~lp~~v~~~-p~~~~L~~~~~~i~rL~NDI~Sy~kE~~~gg~~~N~V~~~mke 363 (433)
T 3v1v_A 286 VWEYLAMRQFN-NFRPCPTITDTVGGYELPADLHAR-PDMQRVIALAGNATTIVNDLYSYTKELNSPGRHLNLPVVIAER 363 (433)
T ss_dssp HHHHHHHHHHS-SSTTTGGGHHHHHTCCCCHHHHTS-HHHHHHHHHHHHHHHHHHHHHSHHHHTTSSSCCCCHHHHHHHH
T ss_pred HHHHHHHHHHH-hHHHHHHHHHHHcCCCCCHHHHhC-chHHHHHHHHHHHHHHhchHHHHHHHHhcCCCCCcHHHHHHHh
Confidence 99999999999 777777778899999999999998 778899999999999999999999999995 788999999999
Q ss_pred cccCCcccCHHHHHHHHHHHHHHHHHHHHhhc
Q 035568 435 KEREGVSVTEQEVHEELYKKVGDAWKDINEEC 466 (518)
Q Consensus 435 ~~~~g~~vS~eeA~~~i~~~i~~~~k~ln~~~ 466 (518)
+ | +|+|+|++++.+|+++++++|.+..
T Consensus 364 ~---g--~S~eeA~~~v~~~i~~~~~~F~~~~ 390 (433)
T 3v1v_A 364 E---Q--LCERDAYLKAVEVHNELQHSFEAAA 390 (433)
T ss_dssp H---T--CCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred c---C--CCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9 9 9999999999999999999987754
No 16
>1yyq_A Trichodiene synthase; terpenoid cyclase fold, site-directed mutant, pyrophosphate, lyase; 2.10A {Fusarium sporotrichioides} PDB: 1yj4_A 1yyr_A* 1yys_A* 1jfa_A 1jfg_A 2q9y_A* 2q9z_A 2ael_A* 2aek_A* 2aet_A 2ps7_A 2ps8_A 1kiy_A 1kiz_A 1yyt_A* 1yyu_A* 2ps5_A 2ps4_A 2ps6_A
Probab=99.75 E-value=1.1e-17 Score=174.18 Aligned_cols=244 Identities=12% Similarity=0.046 Sum_probs=178.3
Q ss_pred HHHHHHHHHhC------------CCCCCchhhhhhhHhHHHHhccccCcchhHHHH-HHHHHhhhhhhhhcccccCCCHH
Q 035568 210 SEISRWWKDLD------------FARKLPFARDRVVECYFWIVGVYFEPQYSLARK-LLTKVISMTSIIDDIYDVYGIPE 276 (518)
Q Consensus 210 ~~l~rWwk~~~------------l~~~l~faRdR~ve~yf~~~a~~feP~~s~~Rl-~laK~~~l~~i~DD~fD~~gt~e 276 (518)
.+..+|..+.| |. .-+-..++.+.+=.|.++..| |..+...+ .++++.+|+|++||.+|..+ +
T Consensus 33 ~~~l~w~~~~~~~~~~~~~~~~~l~-~~~~~l~~~~~t~~~laar~Y-P~a~~e~l~liad~~~~~F~lDD~~d~~~--~ 108 (374)
T 1yyq_A 33 IENLHYAYNKAAHHFAQPRQQQLLK-VDPKRLQASLQTIVGMVVYSW-AKVSKECMADLSIHYTYTLVLDDSKDDPY--P 108 (374)
T ss_dssp HHHHHHHHHHHHHHHTSHHHHHHSC-CCHHHHHHHHHHHHHHHHHHS-TTSCHHHHHHHHHHHHHHHHHTTCCSCSH--H
T ss_pred HHHHHHHHHhccchhcccccccccc-cCHHHHHHHHHHHHHHHhhcC-CCCCHHHHHHHHHHHHHHHhhcccccCcH--H
Confidence 45558888888 42 223345666666566777778 98888877 89999999999999999764 6
Q ss_pred HHHHHHHHhhhcCccccccCChhHHHHHHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHHHHhHhcCCCCCCh
Q 035568 277 ELDLFTAAIDRWDVSCIDQLPEYMQTFYVALLDLYKEIEEELATKGWSYRVHYAKEEMKILVHGYHDESKWFHNNYVPTM 356 (518)
Q Consensus 277 El~~~t~ai~rWd~~~~~~lpe~mk~~f~al~~~~~ei~~~~~~~~~~~~~~~~k~~~~~~~~a~l~EA~W~~~g~vPt~ 356 (518)
++..|.+.+-+ +.+ |+ .++..++.+.+.++.+. .+..+..++.+.|.+++.+++.|+.. .+..|+.
T Consensus 109 ~l~~~~~~ll~--G~~----~~--~Pl~~al~dl~~rl~~~----~~p~~~~rf~~s~~~~~~a~~~Ea~n--~~~~p~~ 174 (374)
T 1yyq_A 109 TMVNYFDDLQA--GRE----QA--HPWWALVNEHFPNVLRH----FGPFCSLNLIRSTLDFFEGCWIEQYN--FGGFPGS 174 (374)
T ss_dssp HHTTHHHHHHH--TCC----CS--SHHHHHHHHHHHHHHTT----SCHHHHHHHHHHHHHHHHHHHHHTTC--CCCCTTC
T ss_pred HHHHHHHHHhc--CCC----CC--ChHHHHHHHHHHHHHHh----cCHHHHHHHHHHHHHHHHHHHHHHhc--cCCCCCH
Confidence 66777766543 211 11 25667777777777543 33356788999999999999999874 6778999
Q ss_pred HHHHhhhhcccchhHHHHHHHHhcCCCCchHHHhh---ccCchHHHHHHhhhhhhccCccchhhhhh-cCCCchHHHHHH
Q 035568 357 EEYMRVSLVTSGYSMLTAASFLGMDSVVTKEAFDW---VSGKPKIIRASTIIGRLMDDIKSHKFEQE-RGHAASAIECYM 432 (518)
Q Consensus 357 eEYl~~~~~S~g~~~~~~~~~~~~g~~l~~ev~e~---~~~~~~i~~~~~~i~RL~NDI~S~~kE~~-~G~~~n~V~cym 432 (518)
++|...++.++|+.-.... -.+|..++.. .+.+..++.....++.|+|||.||.||.. .|+.+|.|.+++
T Consensus 175 ~~Y~~~rR~~sG~~E~~~~------~~~P~~~~~e~~~~~~~~~~i~am~~~i~~~NDIlSf~KE~~~~Gd~~NlV~vl~ 248 (374)
T 1yyq_A 175 HDYPQFLRRMNGLGHCVGA------SLWPKEQFNERSLFLEITSAIAQMENWMVWVNDLMSFYKEFDDERDQISLVKNYV 248 (374)
T ss_dssp TTHHHHHHHHHHCHHHHHH------TTCCTTTCCTTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSSCCCCHHHHHH
T ss_pred HHHHHHHHhhccHHHHHHH------hhccccccchhhcchhHHHHHHHHHHHHHhhhhhhccchhhhccCCccchhhheh
Confidence 9999998888887543322 2244444411 13345677788889999999999999998 599999999999
Q ss_pred hhcccCCcccCHHHHHHHHHHHHHHHHHHHHhhccCCCCCCHHHHHHHHHHHh
Q 035568 433 KEKEREGVSVTEQEVHEELYKKVGDAWKDINEECLMPTEVPRPLLMRVLNLSR 485 (518)
Q Consensus 433 ~e~~~~g~~vS~eeA~~~i~~~i~~~~k~ln~~~l~~~~~p~~~~~~~~n~aR 485 (518)
.++ | +|.++|++++..++..+..++.... . ...|. +++.+-+..|
T Consensus 249 ~~~---g--~S~~eAl~~v~~~~~~~~~r~~~~L-~-~~~~~-~l~al~~~ir 293 (374)
T 1yyq_A 249 VSD---E--ISLHEALEKLTQDTLHSSKQMVAVF-S-DKDPQ-VMDTIECFMH 293 (374)
T ss_dssp HHH---T--CCHHHHHHHHHHHHHHHHHHHHHHH-S-SSCHH-HHHHHHHHHH
T ss_pred hcC---C--CCHHHHHHHHHHHHHHHHHHHHHHh-c-cCCHH-HHHHHHHHHh
Confidence 999 9 9999999999999999988886633 2 22332 4444444444
No 17
>3ipi_A Geranyltranstransferase; isoprene biosynthesis, helical bundle, protein structure initiative II (PSI II), structural genomics, nysgxrc; 1.90A {Methanosarcina mazei}
Probab=86.00 E-value=3.1 Score=41.35 Aligned_cols=143 Identities=11% Similarity=0.041 Sum_probs=80.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHhHhcCCCCCChHHHHhhhhcccchhHHHHHHH--HhcCCCCchHHHhhccCchHHHHHHh
Q 035568 326 RVHYAKEEMKILVHGYHDESKWFHNNYVPTMEEYMRVSLVTSGYSMLTAASF--LGMDSVVTKEAFDWVSGKPKIIRAST 403 (518)
Q Consensus 326 ~~~~~k~~~~~~~~a~l~EA~W~~~g~vPt~eEYl~~~~~S~g~~~~~~~~~--~~~g~~l~~ev~e~~~~~~~i~~~~~ 403 (518)
.+..+.++...++.|-..+..|... .||.++|+..-..-+|.-+..++.. ...| .+++..+.+ .++-+..+
T Consensus 128 ~~~~~~~~~~~~~~GQ~~dl~~~~~--~~t~~~y~~~i~~KTg~L~~~a~~~ga~lag--~~~~~~~~l---~~~g~~lG 200 (295)
T 3ipi_A 128 VIQDFGKAGMDMAEGEVLDLKLEDE--SFGENDYFKCIYKKTASLFAISASIGAYTGG--AEEELAERF---SHFGNALG 200 (295)
T ss_dssp HHHHHHHHHHHHHHHHHHHHC---------CHHHHHHHHHHTHHHHHHHHHHHHHHTT--CCHHHHHHH---HHHHHHHH
T ss_pred HHHHHHHHHHHHHccchHHHHccCC--CCCHHHHHHHHHhhhHHHHHHHHHHHHHHcC--CCHHHHHHH---HHHHHHHH
Confidence 4566677778889998888888654 3899999988665555544332211 1123 355544442 55667778
Q ss_pred hhhhhccCccchhhhh-----hcCCCchHHHHHHhhcccCCcccCHHHHHHHHHHHHHHHHHHHHhhccCCCCCCH-HHH
Q 035568 404 IIGRLMDDIKSHKFEQ-----ERGHAASAIECYMKEKEREGVSVTEQEVHEELYKKVGDAWKDINEECLMPTEVPR-PLL 477 (518)
Q Consensus 404 ~i~RL~NDI~S~~kE~-----~~G~~~n~V~cym~e~~~~g~~vS~eeA~~~i~~~i~~~~k~ln~~~l~~~~~p~-~~~ 477 (518)
...-+.||+..+.... ..|.. +...+|..+. +.+-..+.|.+.+.+.++++.+.+.. +|. +-+
T Consensus 201 laFQI~DDilD~~~~~~gkd~~~gk~-Tlp~l~al~~---~~~~~le~a~~~a~~~~~~A~~~L~~-------lp~~~~~ 269 (295)
T 3ipi_A 201 TAYQIVDDILEFLEVVEGKESKFTSE-TLPHIYMKST---SKEEALKKSIDCVKLHVAAAKETLET-------FRECPAR 269 (295)
T ss_dssp HHHHHHHHHHHHHHHHHC-------C-CHHHHHTTTS---CHHHHHHHHHHHHHHHHHHHHHHHTT-------SCCSHHH
T ss_pred HHHHHHHHHHHhcCCccCCCcccCcc-cHHHHHHHhc---CchhHHHHHHHHHHHHHHHHHHHHHh-------CCCchHH
Confidence 8888899998875432 23443 6676777654 21012556666666666666665532 443 445
Q ss_pred HHHHHHHhh
Q 035568 478 MRVLNLSRV 486 (518)
Q Consensus 478 ~~~~n~aR~ 486 (518)
+...++++.
T Consensus 270 ~~L~~l~~~ 278 (295)
T 3ipi_A 270 DKLFQITDY 278 (295)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 555566543
No 18
>3lmd_A Geranylgeranyl pyrophosphate synthase; isoprenyl diphosphate synthase, structural genomics, PSI, protein structure initiative, nysgrc; 1.90A {Corynebacterium glutamicum} PDB: 3q2q_A*
Probab=83.32 E-value=7.2 Score=39.81 Aligned_cols=103 Identities=20% Similarity=0.156 Sum_probs=67.1
Q ss_pred chHHHHHHHHHHHHHHHHHHHhHhcCCCCCChHHHHhhhhcccchhHHHHHHH--HhcCCCCchHHHhhccCchHHHHHH
Q 035568 325 YRVHYAKEEMKILVHGYHDESKWFHNNYVPTMEEYMRVSLVTSGYSMLTAASF--LGMDSVVTKEAFDWVSGKPKIIRAS 402 (518)
Q Consensus 325 ~~~~~~k~~~~~~~~a~l~EA~W~~~g~vPt~eEYl~~~~~S~g~~~~~~~~~--~~~g~~l~~ev~e~~~~~~~i~~~~ 402 (518)
..+..+.+++..++.|-+.+..|.... ||.++|+..-..-+|..+..++.. ...| .+++..+.+ .++-...
T Consensus 160 ~~~~~~~~~~~~~~~GQ~ldl~~~~~~--~t~~~y~~~i~~KTg~L~~~a~~lga~lag--a~~~~~~~l---~~~g~~l 232 (360)
T 3lmd_A 160 DTVAHFAETFGELVTGQMRETVGPRDT--DPIEHYTNVIREKTGVLIASAGYLGAMHAG--AAPEHIDAL---KNFGAAV 232 (360)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHCCTTS--CHHHHHHHHHHHHTHHHHHHHHHHHHHHTT--CCHHHHHHH---HHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccCCC--CCHHHHHHHHHhhhHHHHHHHHHHHHHHcC--CCHHHHHHH---HHHHHHH
Confidence 356778888999999999999997655 999999998666555554333221 2223 355544442 5566777
Q ss_pred hhhhhhccCccchhhh-----------hhcCCCchHHHHHHhhc
Q 035568 403 TIIGRLMDDIKSHKFE-----------QERGHAASAIECYMKEK 435 (518)
Q Consensus 403 ~~i~RL~NDI~S~~kE-----------~~~G~~~n~V~cym~e~ 435 (518)
....-+.||+..+.-. ...|.. +...+|..++
T Consensus 233 G~aFQI~DDilD~~~d~~~~GK~~g~Dl~egK~-Tlp~l~al~~ 275 (360)
T 3lmd_A 233 GMIFQIVDDIIDIFSETHESGKTPGTDLREGVF-TLPVLYALRE 275 (360)
T ss_dssp HHHHHHHHHHHHHHC--------CCHHHHHTCC-CHHHHHHHHC
T ss_pred HHHHHHHHHHHHccCChhhhCCCchhHHhcCCc-hHHHHHHHHc
Confidence 8888888888777432 334544 5665665443
No 19
>3rmg_A Octaprenyl-diphosphate synthase; structural genomics, protein structure initiative, isoprene biosynthesis, transferase; 2.30A {Bacteroides thetaiotaomicron}
Probab=78.30 E-value=33 Score=34.38 Aligned_cols=86 Identities=16% Similarity=0.035 Sum_probs=57.9
Q ss_pred chHHHHHHHHHHHHHHHHHHHhHhcCCCCCChHHHHhhhhcccchhHHHHHHH--HhcCCCCchHHHhhccCchHHHHHH
Q 035568 325 YRVHYAKEEMKILVHGYHDESKWFHNNYVPTMEEYMRVSLVTSGYSMLTAASF--LGMDSVVTKEAFDWVSGKPKIIRAS 402 (518)
Q Consensus 325 ~~~~~~k~~~~~~~~a~l~EA~W~~~g~vPt~eEYl~~~~~S~g~~~~~~~~~--~~~g~~l~~ev~e~~~~~~~i~~~~ 402 (518)
..+..+.+....++.|-..+..|.. +..||.++|+..-..-+|..+..++.. ...| .+++..+. ...+-...
T Consensus 133 ~~~~~~~~~~~~~~~GQ~ldl~~~~-~~~~t~~~y~~~i~~KTa~L~~~~~~~ga~lag--~~~~~~~~---l~~~g~~l 206 (334)
T 3rmg_A 133 EIIRLVSSLGQKLAEGELLQLSNVS-NHSFSEEVYFDVIRKKTAALFAACAEAAALSVQ--VGEEEVAF---ARLLGEYI 206 (334)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHCCC-C--CCHHHHHHHHHHTHHHHHHHHHHHHHHHTT--CCHHHHHH---HHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCC-CCCCCHHHHHHHHcCChHHHHHHHHHHHHHHcC--CCHHHHHH---HHHHHHHH
Confidence 4567788889999999999999864 335899999998766666554333222 1222 35554443 25666777
Q ss_pred hhhhhhccCccchh
Q 035568 403 TIIGRLMDDIKSHK 416 (518)
Q Consensus 403 ~~i~RL~NDI~S~~ 416 (518)
+...-+.||+..+.
T Consensus 207 G~aFQi~DD~ld~~ 220 (334)
T 3rmg_A 207 GICFQIKDDIFDYF 220 (334)
T ss_dssp HHHHHHHHHHHTTS
T ss_pred HHHHHHHHHhccCC
Confidence 88888889888775
No 20
>3oyr_A Trans-isoprenyl diphosphate synthase; isoprenyl synthase, PSI, protein structure initiative; HET: IPE; 2.00A {Caulobacter crescentus}
Probab=72.09 E-value=56 Score=32.89 Aligned_cols=104 Identities=10% Similarity=0.005 Sum_probs=64.3
Q ss_pred chHHHHHHHHHHHHHHHHHHHhHhcCCCCCChHHHHhhhhcccchhHHHHHHH--HhcCCCCchHHHhhccCchHHHHHH
Q 035568 325 YRVHYAKEEMKILVHGYHDESKWFHNNYVPTMEEYMRVSLVTSGYSMLTAASF--LGMDSVVTKEAFDWVSGKPKIIRAS 402 (518)
Q Consensus 325 ~~~~~~k~~~~~~~~a~l~EA~W~~~g~vPt~eEYl~~~~~S~g~~~~~~~~~--~~~g~~l~~ev~e~~~~~~~i~~~~ 402 (518)
..+..+.++...++.|-+.+..|.. +..||.++|+..-..-+|..+..++.. ...| .+++..+.+ .++-...
T Consensus 151 ~~~~~~~~~~~~~~~GQ~~dl~~~~-~~~~~~~~y~~~i~~KTa~L~~~~~~~ga~lag--~~~~~~~~l---~~~g~~l 224 (345)
T 3oyr_A 151 KALEILARASRVIAEGEVLQLMRSH-DLNLSQAVYLEIIQAKTAELFAAASEAGAVSAG--VDVAKSEAL---RDYGLNL 224 (345)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTSS-CSSCCHHHHHHHHHHHTHHHHHHHHHHHHHHTT--CCHHHHHHH---HHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCC-CCCCCHHHHHHHHHcchHHHHHHHHHHHHHHcC--CCHHHHHHH---HHHHHHH
Confidence 4567778888899999999988854 345899999998666666554333222 1223 355544442 5566778
Q ss_pred hhhhhhccCccchhhh-----------hhcCCCchHHHHHHhhc
Q 035568 403 TIIGRLMDDIKSHKFE-----------QERGHAASAIECYMKEK 435 (518)
Q Consensus 403 ~~i~RL~NDI~S~~kE-----------~~~G~~~n~V~cym~e~ 435 (518)
+...-+.||+..+.-+ ...|.. +..-+|.-++
T Consensus 225 G~aFQi~DD~lD~~~d~~~~GK~~g~Dl~egK~-TlP~i~al~~ 267 (345)
T 3oyr_A 225 GLAFQLADDALDYGGATETLGKNAGDDFREGKA-TLPLLLAIAR 267 (345)
T ss_dssp HHHHHHHHHHTTC-------------------C-CHHHHHHHHH
T ss_pred HHHHHHHHHHHhccCChhhcCCCccchhhcCch-HHHHHHHHHh
Confidence 8888888998877532 223333 5666666554
No 21
>3acx_A Dehydrosqualene synthase; CRTM, carotenoid biosynthesis, staphyloxanthin biosynthesis, transferase, head-TO-head condensation, inhibitor; HET: 673; 1.31A {Staphylococcus aureus} PDB: 2zcp_A* 2zcq_A* 2zcr_A* 2zcs_A* 2zy1_A* 3acw_A* 2zco_A* 3acy_A* 3npr_A* 3nri_A* 3tfn_A* 3tfp_A* 3tfv_A* 3adz_A* 3lgz_B* 3vjd_A* 3vje_A* 3ae0_A* 4ea2_A* 4e9u_A* ...
Probab=70.63 E-value=81 Score=30.64 Aligned_cols=180 Identities=17% Similarity=0.102 Sum_probs=95.3
Q ss_pred HHHHHHHHHhhhhhhhhcccccCCCHHHHHHHHHHhhhc-Ccccc--ccCChhHHHHHHHHHHHHHHHHHHHHhcCCcch
Q 035568 250 LARKLLTKVISMTSIIDDIYDVYGIPEELDLFTAAIDRW-DVSCI--DQLPEYMQTFYVALLDLYKEIEEELATKGWSYR 326 (518)
Q Consensus 250 ~~Rl~laK~~~l~~i~DD~fD~~gt~eEl~~~t~ai~rW-d~~~~--~~lpe~mk~~f~al~~~~~ei~~~~~~~~~~~~ 326 (518)
..|-.+.-+-.|.-.+||+=|....+.+|+.+.+.+++- ++... ...|+ .++..++.+++.+. +..
T Consensus 38 ~~R~av~alYaf~R~~Ddi~D~~~~~~~L~~w~~~l~~~~~g~~~~~~~~~~--~pv~~al~~~~~~~--------~l~- 106 (293)
T 3acx_A 38 DQRKAVWAIYAVCRKIDDSIDVYGDIQFLNQIKEDIQSIEKYPYEYHHFQSD--RRIMMALQHVAQHK--------NIA- 106 (293)
T ss_dssp HHHHHHHHHHHHHHHHHHGGGGTSSTHHHHHHHHHHHHHHHCTTSCCCCSSC--HHHHHHHHHHHHHS--------CCC-
T ss_pred HHHHHHHHHHHHHHHHhhHhccCCCHHHHHHHHHHHHHHhCCCCcccCCCCC--CHHHHHHHHHHHHh--------CCC-
Confidence 456655667777888999999766555566655555442 11110 00022 36667777665443 111
Q ss_pred HHHHHHHHHHHHHHHHHHHhHhcCCCCCChHHHHhhhhcccchhHHHHHHHHhcCCCCchHHHhhccCchHHHHHHhhhh
Q 035568 327 VHYAKEEMKILVHGYHDESKWFHNNYVPTMEEYMRVSLVTSGYSMLTAASFLGMDSVVTKEAFDWVSGKPKIIRASTIIG 406 (518)
Q Consensus 327 ~~~~k~~~~~~~~a~l~EA~W~~~g~vPt~eEYl~~~~~S~g~~~~~~~~~~~~g~~l~~ev~e~~~~~~~i~~~~~~i~ 406 (518)
++.+.+++.|+-.. ......+|++|+..+...+.|.--.+++-.++..+ .++..+. ....+.-.
T Consensus 107 ----~~~~~~li~g~~~D---l~~~~~~t~~dL~~Yc~~vAg~VG~l~~~l~g~~~--~~~~~~~-------A~~lG~Al 170 (293)
T 3acx_A 107 ----FQSFYNLIDTVYKD---QHFTMFETDAELFGYCYGVAGTVGEVLTPILSDHE--THQTYDV-------ARRLGESL 170 (293)
T ss_dssp ----HHHHHHHHHHHHHH---TTCCCCSSHHHHHHHHHHHTHHHHHHHHHHHCSSC--CHHHHHH-------HHHHHHHH
T ss_pred ----HHHHHHHHHHHHHH---cCCCCCCCHHHHHHHHHHhhHHHHHHHHHHhCCCC--cHHHHHH-------HHHHHHHH
Confidence 34456677777533 33455789999988887777766555555554321 1222222 12222222
Q ss_pred hhccCccchhhhhhcCC--CchHHHHHHhhcccCCcccCHHHH---------HHHHHHHHHHHHHHHHh
Q 035568 407 RLMDDIKSHKFEQERGH--AASAIECYMKEKEREGVSVTEQEV---------HEELYKKVGDAWKDINE 464 (518)
Q Consensus 407 RL~NDI~S~~kE~~~G~--~~n~V~cym~e~~~~g~~vS~eeA---------~~~i~~~i~~~~k~ln~ 464 (518)
-|.|=+........+|- ++.- -|.++ | +|.++- .+-+..++..+..-+.+
T Consensus 171 QltNilRDv~eD~~~gR~YLP~d---~l~~~---g--v~~e~l~~~~~~~~~~~~~~~l~~~A~~~~~~ 231 (293)
T 3acx_A 171 QLINILRDVGEDFENERIYFSKQ---RLKQY---E--VDIAEVYQNGVNNHYIDLWEYYAAIAEKDFRD 231 (293)
T ss_dssp HHHHHHHCHHHHHHTTCCCSCHH---HHHHH---T--CCHHHHHHHCCCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCcEEeCHH---HHHHc---C--CCHHHhcccCCCHHHHHHHHHHHHHHHHHHHH
Confidence 22232222233345564 3433 36778 8 887762 23455566666655544
No 22
>3mzv_A Decaprenyl diphosphate synthase; transferase, structural genomics, PSI-2, protein structure initiative; 1.90A {Rhodobacter capsulatus}
Probab=68.15 E-value=86 Score=31.42 Aligned_cols=104 Identities=11% Similarity=-0.018 Sum_probs=65.0
Q ss_pred chHHHHHHHHHHHHHHHHHHHhHhcCCCCCChHHHHhhhhcccchhHHHHHHH--HhcCCCCchHHHhhccCchHHHHHH
Q 035568 325 YRVHYAKEEMKILVHGYHDESKWFHNNYVPTMEEYMRVSLVTSGYSMLTAASF--LGMDSVVTKEAFDWVSGKPKIIRAS 402 (518)
Q Consensus 325 ~~~~~~k~~~~~~~~a~l~EA~W~~~g~vPt~eEYl~~~~~S~g~~~~~~~~~--~~~g~~l~~ev~e~~~~~~~i~~~~ 402 (518)
..+..+.++...++.|-+.+..|.. +..||.++|+..-..-+|..+..++.. ...| .+++..+.+ ..+-...
T Consensus 139 ~~~~~~~~~~~~~~~GQ~~dl~~~~-~~~~t~~~y~~~i~~KTa~L~~~~~~~ga~lag--~~~~~~~~l---~~~g~~l 212 (341)
T 3mzv_A 139 RVMEILANASAVIAEGEVLQLTAAQ-NLATTEDIYLRVIRGKTAALFSAATEVGGIIGG--APEDQVQAL---FDYGDAL 212 (341)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTT-CTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHTT--CCHHHHHHH---HHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcc-CCCCCHHHHHHHHHcchHHHHHHHHHHHHHHcC--CCHHHHHHH---HHHHHHH
Confidence 4566778888899999999988864 346899999988666555544332211 1222 345444432 4566777
Q ss_pred hhhhhhccCccchhh-----------hhhcCCCchHHHHHHhhc
Q 035568 403 TIIGRLMDDIKSHKF-----------EQERGHAASAIECYMKEK 435 (518)
Q Consensus 403 ~~i~RL~NDI~S~~k-----------E~~~G~~~n~V~cym~e~ 435 (518)
+...-+.||+..+.- +...|.. +...+|..++
T Consensus 213 G~aFQI~DD~ld~~~d~~~~GK~~g~Dl~egK~-Tlp~i~al~~ 255 (341)
T 3mzv_A 213 GIAFQIVDDLLDYGGKSAEIGKNTGDDFRERKL-TMPVIKAVAL 255 (341)
T ss_dssp HHHHHHHHHHHHC----------CCHHHHTTCC-CHHHHHHHHT
T ss_pred HHHHHHHHHHHhccCChhhcCCCCCcccccCch-hHHHHHHHHh
Confidence 777888888877643 2344554 5555666543
No 23
>4hd1_A Squalene synthase HPNC; MCSG, structural genomics, PSI-biology, midwest center for S genomics, transferase; 2.40A {Alicyclobacillus acidocaldarius subsp}
Probab=63.31 E-value=1.1e+02 Score=29.66 Aligned_cols=105 Identities=13% Similarity=0.103 Sum_probs=57.5
Q ss_pred HHHHHHHhhhhhhhhcccccCCC--HHHHHHHHHHhhhcCccccccCChhHHHHHHHHHHHHHHHHHHHHhcCCcchHHH
Q 035568 252 RKLLTKVISMTSIIDDIYDVYGI--PEELDLFTAAIDRWDVSCIDQLPEYMQTFYVALLDLYKEIEEELATKGWSYRVHY 329 (518)
Q Consensus 252 Rl~laK~~~l~~i~DD~fD~~gt--~eEl~~~t~ai~rWd~~~~~~lpe~mk~~f~al~~~~~ei~~~~~~~~~~~~~~~ 329 (518)
|-.+.-+-.|.=.+||+-|.... ...|+.+.+.+++. ...-|. .+++.+|.+++.+.. -.
T Consensus 41 R~~~~alYaf~R~~Ddi~D~~~~~~~~~L~~~~~~l~~~----~~g~~~--~pv~~al~~~~~~~~-------l~----- 102 (294)
T 4hd1_A 41 RPHFYSVYAFCRGVDDLGDEFAGDRMAALDAYEEELRRA----FAGEAT--TPAFRALQFTIATCN-------LP----- 102 (294)
T ss_dssp HHHHHHHHHHHHHHHHTSTTCCSCHHHHHHHHHHHHHHH----HHTCCC--SHHHHHHHHHHHHHT-------CC-----
T ss_pred HHHHHHHHHHHHHHHHhccCCChhHHHHHHHHHHHHHHH----hcCCCC--CHHHHHHHHHHHHcC-------CC-----
Confidence 33334555666788999996542 23344444444332 111122 267777777766542 11
Q ss_pred HHHHHHHHHHHHHHHHhHhcCCCCCChHHHHhhhhcccchhHHHHHHHH
Q 035568 330 AKEEMKILVHGYHDESKWFHNNYVPTMEEYMRVSLVTSGYSMLTAASFL 378 (518)
Q Consensus 330 ~k~~~~~~~~a~l~EA~W~~~g~vPt~eEYl~~~~~S~g~~~~~~~~~~ 378 (518)
++.+.+++.|+..... ....+|++|+......+.|.--.+++..+
T Consensus 103 -~~~~~~li~g~~~Dl~---~~~~~t~~dL~~Y~~~vAg~VG~m~~~i~ 147 (294)
T 4hd1_A 103 -MEPFLRLIEANRRDQR---KHTYDTWEDLRDYCRYSADPVGRLVLGIF 147 (294)
T ss_dssp -SHHHHHHHHHHHHHHH---CSBCCSHHHHHHHHHHHTHHHHHHHHHHT
T ss_pred -HHHHHHHHHHHHhccc---cCCCCCHHHHHHHHHhccchHHHHHHHHh
Confidence 2335567777754443 34468998888887777665444444343
No 24
>1wy0_A Geranylgeranyl pyrophosphate synthetase; pyrococcus horikosh structural genomics, riken structural genomics/proteomics initiative, RSGI; 2.20A {Pyrococcus horikoshii}
Probab=62.34 E-value=53 Score=32.88 Aligned_cols=103 Identities=17% Similarity=0.138 Sum_probs=66.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHhHhcCCCCCChHHHHhhhhcccchhHHHHHHH--HhcCCCCchHHHhhccCchHHHHHHh
Q 035568 326 RVHYAKEEMKILVHGYHDESKWFHNNYVPTMEEYMRVSLVTSGYSMLTAASF--LGMDSVVTKEAFDWVSGKPKIIRAST 403 (518)
Q Consensus 326 ~~~~~k~~~~~~~~a~l~EA~W~~~g~vPt~eEYl~~~~~S~g~~~~~~~~~--~~~g~~l~~ev~e~~~~~~~i~~~~~ 403 (518)
.+..+.++...++.|-..+..|.... ..|.++|+..-..-+|..+..++.. ...| .+++..+.+ .++-...+
T Consensus 138 ~~~~~~~~~~~~~~GQ~~dl~~~~~~-~~~~~~y~~~i~~KTa~L~~~~~~~ga~lag--~~~~~~~~l---~~~g~~lG 211 (342)
T 1wy0_A 138 VLEVIVKASNELCEGQARDLEFEKKS-TVTIEEYMEMISGKTGALFEASAKVGGIIGT--DNEEYIKAL---SSWGRNVG 211 (342)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTCS-CCCHHHHHHHHHHHTHHHHHHHHHHHHHHHC--CCHHHHHHH---HHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHcccCC-CCCHHHHHHHHHHhhHHHHHHHHHHHHHHcC--CCHHHHHHH---HHHHHHHH
Confidence 45667778889999999999997543 4599999998666555554332222 1223 355554443 56677888
Q ss_pred hhhhhccCccchhhh-----------hhcCCCchHHHHHHhhc
Q 035568 404 IIGRLMDDIKSHKFE-----------QERGHAASAIECYMKEK 435 (518)
Q Consensus 404 ~i~RL~NDI~S~~kE-----------~~~G~~~n~V~cym~e~ 435 (518)
...-+.||+..+.-+ ...|.. +...+|.-++
T Consensus 212 ~aFQI~DD~lD~~~d~~~~GK~~g~Dl~egK~-Tlp~i~al~~ 253 (342)
T 1wy0_A 212 IAFQIWDDVLDLIADEKKLGKPVGSDIRKGKK-TLIVAHFFEN 253 (342)
T ss_dssp HHHHHHHHHHHHHSCHHHHTSCSCHHHHHTCC-CHHHHHHHHH
T ss_pred HHHHHHHHHHhccCChhhhCCCchhHHhCCCC-cHHHHHHHHh
Confidence 888889999877432 233444 5666666654
No 25
>3pko_A Geranylgeranyl pyrophosphate synthase; isoprenyl diphosphate synthase, structural genomics, PSI, PR structure initiative, nysgrc; HET: CIT; 1.98A {Lactobacillus brevis} PDB: 3n3d_A
Probab=62.18 E-value=85 Score=31.36 Aligned_cols=102 Identities=12% Similarity=-0.004 Sum_probs=62.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHhHhcCCCCCChHHHHhhhhcccchhHHHHHH--HHhcCCCCchHHHhhccCchHHHHHHh
Q 035568 326 RVHYAKEEMKILVHGYHDESKWFHNNYVPTMEEYMRVSLVTSGYSMLTAAS--FLGMDSVVTKEAFDWVSGKPKIIRAST 403 (518)
Q Consensus 326 ~~~~~k~~~~~~~~a~l~EA~W~~~g~vPt~eEYl~~~~~S~g~~~~~~~~--~~~~g~~l~~ev~e~~~~~~~i~~~~~ 403 (518)
.+..+.+....++.|-+.+..|.. +..||.++|+..-..-+|..+..++. -...| .+++..+.+ .++-...+
T Consensus 144 ~~~~~~~~~~~~~~Gq~~dl~~~~-~~~~~~~~yl~~i~~KTa~L~~~~~~~ga~lag--~~~~~~~~l---~~~g~~lG 217 (334)
T 3pko_A 144 LIQNHIDAMHRILQGELHQMDLNY-REDITLDAYLNEIAGKTAELFALSCYQGAQLAG--APQSVIDRT---RDIGIAIG 217 (334)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTT-CTTCCHHHHHHHHHHTTHHHHHHHHHHHHHHTT--CCHHHHHHH---HHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcc-CCCCCHHHHHHHHHcchHHHHHHHHHHHHHHcC--CCHHHHHHH---HHHHHHHH
Confidence 456677788889999888888754 34689999998755555544332221 12223 355544442 45556667
Q ss_pred hhhhhccCccchhh-----------hhhcCCCchHHHHHHhh
Q 035568 404 IIGRLMDDIKSHKF-----------EQERGHAASAIECYMKE 434 (518)
Q Consensus 404 ~i~RL~NDI~S~~k-----------E~~~G~~~n~V~cym~e 434 (518)
...-+.||+..+.. +...|.. +...+|..+
T Consensus 218 ~aFQi~DD~ld~~~~~~~~GK~~g~Dl~egK~-Tlp~i~al~ 258 (334)
T 3pko_A 218 CAYQMLDDILDYAGDPKRTQKPVLEDLRSGVY-SLPLLLSLS 258 (334)
T ss_dssp HHHHHHHHHHHHCSCTTSCCHHHHHHHHTTCC-CHHHHHHGG
T ss_pred HHHHHHHHHHhccCChhhcCCCCCCccccCch-hHHHHHHHH
Confidence 77777787766532 3455665 566566655
No 26
>3apz_A Geranyl diphosphate synthase; prenyltransferase, all alpha-helices fold, chroloplast, TRAN isoprenoid biosynthetic process; 2.60A {Arabidopsis thaliana} PDB: 3aq0_A*
Probab=61.14 E-value=74 Score=31.89 Aligned_cols=87 Identities=17% Similarity=0.044 Sum_probs=55.6
Q ss_pred chHHHHHHHHHHHHHHHHHHHhHhcCCCCCChHHHHhhhhcccchhHHHHHH--HHhcCCCCchHHHhhccCchHHHHHH
Q 035568 325 YRVHYAKEEMKILVHGYHDESKWFHNNYVPTMEEYMRVSLVTSGYSMLTAAS--FLGMDSVVTKEAFDWVSGKPKIIRAS 402 (518)
Q Consensus 325 ~~~~~~k~~~~~~~~a~l~EA~W~~~g~vPt~eEYl~~~~~S~g~~~~~~~~--~~~~g~~l~~ev~e~~~~~~~i~~~~ 402 (518)
..+..+.++...++.|-+.+..|... ..||.++|+..-..-+|..+..++. -...| .+++..+.+ .++-...
T Consensus 153 ~~~~~~~~~~~~~~~GQ~~dl~~~~~-~~~~~~~y~~~i~~KTa~L~~~~~~~ga~lag--~~~~~~~~l---~~~g~~l 226 (348)
T 3apz_A 153 EVVALLATAVEHLVTGETMEITSSTE-QRYSMDYYMQKTYYKTASLISNSCKAVAVLTG--QTAEVAVLA---FEYGRNL 226 (348)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTCCHH-HHTCHHHHHHHHHHHHTHHHHHHHHHHHHTTT--CCHHHHHHH---HHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccC-CCCCHHHHHHHHHcchHHHHHHHHHHHHHHcC--cCHHHHHHH---HHHHHHH
Confidence 35667778888899998888877532 3579999999855555544433221 12223 345544432 4566777
Q ss_pred hhhhhhccCccchhh
Q 035568 403 TIIGRLMDDIKSHKF 417 (518)
Q Consensus 403 ~~i~RL~NDI~S~~k 417 (518)
+...-+.||+..+--
T Consensus 227 G~aFQi~DD~lD~~g 241 (348)
T 3apz_A 227 GLAFQLIDDILDFTG 241 (348)
T ss_dssp HHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhhccC
Confidence 778888888887754
No 27
>4dhd_A Polyprenyl synthetase; isoprenoid synthesis, isoprenoid diphosphate synthase, trans; 1.65A {Pyrobaculum calidifontis} PDB: 4gp1_A* 4gp2_A*
Probab=59.13 E-value=54 Score=33.16 Aligned_cols=105 Identities=12% Similarity=0.133 Sum_probs=65.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHhHhc----------CCC-CCChHHHHhhhhcccchhHHHHHHH--HhcCCCCchHHHhhc
Q 035568 326 RVHYAKEEMKILVHGYHDESKWFH----------NNY-VPTMEEYMRVSLVTSGYSMLTAASF--LGMDSVVTKEAFDWV 392 (518)
Q Consensus 326 ~~~~~k~~~~~~~~a~l~EA~W~~----------~g~-vPt~eEYl~~~~~S~g~~~~~~~~~--~~~g~~l~~ev~e~~ 392 (518)
.+..+.++...++.|-..+..|.. .+. .||.++|+..-..-+|..+..++.. ...| .+++..+.+
T Consensus 133 ~~~~~~~~~~~~~~GQ~ldl~~~~~~~~dp~~~~~~~~~~t~~~y~~~i~~KTa~L~~~~~~~ga~lag--~~~~~~~~l 210 (358)
T 4dhd_A 133 FAKEVAEVIKAIDEGERLDILFEAAGRSDPYFVQARWREVTLDDYIKMVSLKTGALIAAAAKWGVLSVS--DDRGLAEAA 210 (358)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTBSSCCCCHHHHHTCCSCCCHHHHHHHHHHHTHHHHHHHHHHHHHHHC--CCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHccccccccccccccCCCCCCHHHHHHHHHcchHHHHHHHHHHHHHHcC--CCHHHHHHH
Confidence 466778888999999999999972 233 6799999998666555554332211 1123 344444432
Q ss_pred cCchHHHHHHhhhhhhccCccchhh-----------hhhcCCCchHHHHHHhhc
Q 035568 393 SGKPKIIRASTIIGRLMDDIKSHKF-----------EQERGHAASAIECYMKEK 435 (518)
Q Consensus 393 ~~~~~i~~~~~~i~RL~NDI~S~~k-----------E~~~G~~~n~V~cym~e~ 435 (518)
.++-...+...-+.||+..+-- +...|...+..-+|..++
T Consensus 211 ---~~~g~~lG~aFQI~DD~lD~~gd~~~~GK~~g~Dl~egK~~T~p~i~al~~ 261 (358)
T 4dhd_A 211 ---WNFGMAAGVAFQIIDDVLDIYGDPKKFGKEIGKDIKEHKRGNAVVAVALSH 261 (358)
T ss_dssp ---HHHHHHHHHHHHHHHHHHHHHC-------CTTHHHHTTBSCSHHHHHHHHH
T ss_pred ---HHHHHHHHHHHHHHHHHHHhcCChhhcCCCchhhHhcCChhhHHHHHHHHh
Confidence 4566777777888888877642 233455425555665554
No 28
>2ftz_A Geranyltranstransferase; TM0161, structural GE joint center for structural genomics, JCSG, protein structu initiative, PSI; HET: MLY; 1.90A {Thermotoga maritima}
Probab=53.24 E-value=81 Score=30.78 Aligned_cols=124 Identities=12% Similarity=0.007 Sum_probs=77.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHhHhcCCCCCChHHHHhhhhcccchhHHHHHH--HHhcCCCCchHHHhhccCchHHHHHHh
Q 035568 326 RVHYAKEEMKILVHGYHDESKWFHNNYVPTMEEYMRVSLVTSGYSMLTAAS--FLGMDSVVTKEAFDWVSGKPKIIRAST 403 (518)
Q Consensus 326 ~~~~~k~~~~~~~~a~l~EA~W~~~g~vPt~eEYl~~~~~S~g~~~~~~~~--~~~~g~~l~~ev~e~~~~~~~i~~~~~ 403 (518)
.+..+.++...++.|-..+..|......||.++|+..-..-+|..+..++. -...| .+++ ...++-...+
T Consensus 135 ~~~~l~~~~~~~~~GQ~ldl~~~~~~~~~~~~~y~~i~~~KTa~L~~~~~~~ga~lag--~~~~------~l~~~g~~lG 206 (284)
T 2ftz_A 135 IFEEFSETAYXLLLGEAMDVEFERRXMEVSQEMVERMYAFXTGALFAFCFSAPFILXG--XDHT------XMXLLGEXFG 206 (284)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHSCCCCCHHHHHHHHHHHTHHHHHHHHHHHHHHHT--CCCH------HHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhhHHHHHhccCcCCCCHHHHHHHHHhhhHHHHHHHHHHHHHHhC--CChh------HHHHHHHHHH
Confidence 566677777899999999999976554789999999866655554432221 12223 2333 1245667788
Q ss_pred hhhhhccCccchhhhh-hcCCC-chHHH--HHHhhcccCCcccCHHHHHHHHHHHHHHHHHHHHh
Q 035568 404 IIGRLMDDIKSHKFEQ-ERGHA-ASAIE--CYMKEKEREGVSVTEQEVHEELYKKVGDAWKDINE 464 (518)
Q Consensus 404 ~i~RL~NDI~S~~kE~-~~G~~-~n~V~--cym~e~~~~g~~vS~eeA~~~i~~~i~~~~k~ln~ 464 (518)
...-+.||+..+.-.. ..|+. .+=+. -|..=+ ..|.|.+.+.+.++++.+.+..
T Consensus 207 ~aFQI~DD~lD~~~d~~~~GK~~g~Dl~K~T~p~l~-------~l~~a~~~a~~~~~~A~~~L~~ 264 (284)
T 2ftz_A 207 VAFQIYDDLXDILGSFEKVGKDLGKDTEXVTLVXXV-------GIQXAREMADXYYEEVLXGIES 264 (284)
T ss_dssp HHHHHHHHHHHHHHHCCCC-----------CHHHHH-------CHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhhhhcCCHHhhCCCcchhccccchHHHH-------HHHHHHHHHHHHHHHHHHHHHh
Confidence 8888999999886542 23431 11111 011111 3577888888999989888765
No 29
>1wmw_A Geranylgeranyl diphosphate synthetase; GGPP, prenyl diphosphate synthase, structural genom riken structural genomics/proteomics initiative; 1.55A {Thermus thermophilus}
Probab=46.43 E-value=2.3e+02 Score=28.00 Aligned_cols=102 Identities=16% Similarity=0.111 Sum_probs=64.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHhH-hcCCCCCChHHHHhhhhcccchh-HHHH--HHHHhcCCCCchHHHhhccCchHHHHH
Q 035568 326 RVHYAKEEMKILVHGYHDESKW-FHNNYVPTMEEYMRVSLVTSGYS-MLTA--ASFLGMDSVVTKEAFDWVSGKPKIIRA 401 (518)
Q Consensus 326 ~~~~~k~~~~~~~~a~l~EA~W-~~~g~vPt~eEYl~~~~~S~g~~-~~~~--~~~~~~g~~l~~ev~e~~~~~~~i~~~ 401 (518)
.+..+.++...++.|-+.+..| ......||.++|+..-..-+|.. +..+ +.-...|. +++.. ..++-..
T Consensus 131 ~~~~~~~~~~~~~~GQ~~dl~~~~~~~~~~~~~~y~~~i~~KTa~Ls~~~~~~~ga~lag~--~~~~~-----l~~~g~~ 203 (330)
T 1wmw_A 131 VLLEFHEVVRRTAYGQHLDLLWTLGGTFDLRPEDYFRMVAHKAAYYTAVAPLRLGALLAGK--TPPAA-----YEEGGLR 203 (330)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHSSSCCCCHHHHHHHHHHHTHHHHHHHHHHHHHHHTTC--CCCHH-----HHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcccCCCCCCHHHHHHHHHccccHHHHHHHHHHHHHHcCC--CHHHH-----HHHHHHH
Confidence 4666778889999999999999 65435689999998866555544 3222 22222332 22222 2456677
Q ss_pred HhhhhhhccCccchhh----------hhhcCCCchHHHHHHhhc
Q 035568 402 STIIGRLMDDIKSHKF----------EQERGHAASAIECYMKEK 435 (518)
Q Consensus 402 ~~~i~RL~NDI~S~~k----------E~~~G~~~n~V~cym~e~ 435 (518)
.+...-+.||+..+.- +...|.. +...+|..++
T Consensus 204 lG~aFQi~DD~ld~~~d~~~GK~~g~Dl~egK~-T~p~i~al~~ 246 (330)
T 1wmw_A 204 LGTAFQIVDDVLNLEGGEAYGKERAGDLYEGKR-TLILLRFLEE 246 (330)
T ss_dssp HHHHHHHHHHHHHHSCSCCCSSSTTHHHHHTCC-CHHHHHHHHH
T ss_pred HHHHHHHHHccCcccCCcccCCCcCchhhCCCC-CHHHHHHHHh
Confidence 7777778888877642 3344554 5565666554
No 30
>1pd3_A Nonstructural protein NS2; influenza virus A, NEP/NS2, unknown function; 2.60A {Influenza a virus} SCOP: a.30.3.1
Probab=43.68 E-value=25 Score=25.54 Aligned_cols=33 Identities=33% Similarity=0.403 Sum_probs=26.4
Q ss_pred HHHHHHHHHHHHHhhccCcChhhhhHHHHHHHHh
Q 035568 10 QEIEELKEEVRRELLGSGVDSLSRLKLIDAILRL 43 (518)
Q Consensus 10 ~~~~~lk~~v~~~l~~~~~~~~~~l~liD~lqrL 43 (518)
+++.=|.+|||.-|+. +.+.++++-+..+||-|
T Consensus 16 EeIRwlIeE~Rh~Lk~-TensfeQItfmqalQLl 48 (58)
T 1pd3_A 16 EEIRWLIEEVRHRLKI-TENSFEQITFMQALQLL 48 (58)
T ss_dssp HHHHHHHHHHHHTCCC-CTTSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHh-hhchHHHHHHHHHHHHH
Confidence 4556678888888875 78899999999998865
No 31
>3nf2_A Putative polyprenyl synthetase; isoprenyl diphosphate synthase, structural genomics, PSI, PR structure initiative, nysgrc; 2.20A {Streptomyces coelicolor}
Probab=42.38 E-value=1.1e+02 Score=30.68 Aligned_cols=103 Identities=13% Similarity=0.039 Sum_probs=66.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHhHhcCCCCCChHHHHhhhhcccchhHHHHHHH--HhcCCCCchHHHhhccCchHHHHHHh
Q 035568 326 RVHYAKEEMKILVHGYHDESKWFHNNYVPTMEEYMRVSLVTSGYSMLTAASF--LGMDSVVTKEAFDWVSGKPKIIRAST 403 (518)
Q Consensus 326 ~~~~~k~~~~~~~~a~l~EA~W~~~g~vPt~eEYl~~~~~S~g~~~~~~~~~--~~~g~~l~~ev~e~~~~~~~i~~~~~ 403 (518)
.+..+.++...++.|-+.+..|... ..||.++|+..-..-+|..+..++.. ...| .+++..+.+ ..+-+..+
T Consensus 144 ~~~~~~~~~~~l~~GQ~~dl~~~~~-~~~t~~~y~~~i~~KTa~L~~~~~~~ga~lag--~~~~~~~~l---~~~g~~lG 217 (352)
T 3nf2_A 144 ATRRLTKASRSLIDGQAQDISYEHR-DRVSVEECLEMEGNKTGALLACASSIGAVLGG--ADERTADTL---EKYGYHLG 217 (352)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTC-SCCCHHHHHHHHHHHTHHHHHHHHHHHHHHTT--CCHHHHHHH---HHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHcccC-CCCCHHHHHHHHHcccHHHHHHHHHHHHHHcC--CCHHHHHHH---HHHHHHHH
Confidence 4566778888999999999998653 36899999998666555554333222 1223 355554442 55667778
Q ss_pred hhhhhccCccchhh-----------hhhcCCCchHHHHHHhhc
Q 035568 404 IIGRLMDDIKSHKF-----------EQERGHAASAIECYMKEK 435 (518)
Q Consensus 404 ~i~RL~NDI~S~~k-----------E~~~G~~~n~V~cym~e~ 435 (518)
...-+.||+..+-- +...|.. +..-+|.-++
T Consensus 218 ~aFQi~DD~ld~~gd~~~~GK~~g~Dl~egK~-Tlpvi~al~~ 259 (352)
T 3nf2_A 218 LAFQAVDDLLGIWGDPDATGKQTWSDLRQRKK-SLPVVAALAA 259 (352)
T ss_dssp HHHHHHHHHHHHHCCHHHHSSCTTHHHHTTCC-CHHHHHHHHH
T ss_pred HHHHHHHHHHhccCChhhhCCCcCcccccCCc-cHHHHHHHHh
Confidence 88888888877642 2234544 5555565554
No 32
>1rtr_A Geranyltranstransferase; 2.50A {Staphylococcus aureus} SCOP: a.128.1.1
Probab=40.84 E-value=55 Score=32.26 Aligned_cols=112 Identities=10% Similarity=0.027 Sum_probs=68.9
Q ss_pred HHHHHHHHHHHhHhcCCCCCChHHHHhhhhcccchhHHHHHHH--HhcCCCCchHHHhhccCchHHHHHHhhhhhhccCc
Q 035568 335 KILVHGYHDESKWFHNNYVPTMEEYMRVSLVTSGYSMLTAASF--LGMDSVVTKEAFDWVSGKPKIIRASTIIGRLMDDI 412 (518)
Q Consensus 335 ~~~~~a~l~EA~W~~~g~vPt~eEYl~~~~~S~g~~~~~~~~~--~~~g~~l~~ev~e~~~~~~~i~~~~~~i~RL~NDI 412 (518)
..++.|-..+..|... .||.++|+..-..-+|..+..++.. ...| .+++..+.+ .++-...+...-+.||+
T Consensus 148 ~~~~~GQ~~Dl~~~~~--~~~~~~y~~i~~~KTa~L~~~~~~~ga~lag--~~~~~~~~l---~~~g~~lG~aFQI~DDi 220 (301)
T 1rtr_A 148 VGMVGGQMLDMQSEGQ--PIDLETLEMIHKTKTGALLTFAVMSAADIAN--VDDTTKEHL---ESYSYHLGMMFQIKDDL 220 (301)
T ss_dssp TTHHHHHHHHHHTTTS--CCCHHHHHHHHHHHTHHHHHHHHHHHHHHHT--CCHHHHHHH---HHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHccCC--CCCHHHHHHHHHhchHHHHHHHHHHHHHHcC--CCHHHHHHH---HHHHHHHHHHHHHHHHH
Confidence 5577777878887543 7899999998666555544332211 1223 455555443 56677888888999999
Q ss_pred cchhhhh-hcCCC---------chHHHHHHhhcccCCcccCHHHHHHHHHHHHHHHHHHHHh
Q 035568 413 KSHKFEQ-ERGHA---------ASAIECYMKEKEREGVSVTEQEVHEELYKKVGDAWKDINE 464 (518)
Q Consensus 413 ~S~~kE~-~~G~~---------~n~V~cym~e~~~~g~~vS~eeA~~~i~~~i~~~~k~ln~ 464 (518)
..+.-.. ..|+. .+.+.+|. .+.|.+.+.+.++++.+.+..
T Consensus 221 lD~~~d~~~~GK~~g~Dl~~gK~T~p~l~a-----------l~~a~~~a~~~~~~A~~~L~~ 271 (301)
T 1rtr_A 221 LDCYGDEAKLGKKVGSDLENNKSTYVSLLG-----------KDGAEDKLTYHRDAAVDELTQ 271 (301)
T ss_dssp HHHHHHHCC-------------CCHHHHHH-----------HHHHHHHHHHHHHHHHHHHHT
T ss_pred HHhcCCHHHhCCCcchHHHcCCCcHHHHHH-----------HHHHHHHHHHHHHHHHHHHHh
Confidence 8875432 22321 12332221 466778888888888877754
No 33
>3m0g_A Farnesyl diphosphate synthase; structural genomics, protein structure initiative, NYSGXRC, biosynthesis, transferase, PSI-2; 1.90A {Rhodobacter capsulatus} PDB: 3lvs_A
Probab=38.32 E-value=57 Score=32.13 Aligned_cols=111 Identities=15% Similarity=0.073 Sum_probs=63.1
Q ss_pred HHHHHHHHHHHhHhcCCCCCChHHHHhhhhcccchhHHHHH--HHHhcCCCCchHHHhhccCchHHHHHHhhhhhhccCc
Q 035568 335 KILVHGYHDESKWFHNNYVPTMEEYMRVSLVTSGYSMLTAA--SFLGMDSVVTKEAFDWVSGKPKIIRASTIIGRLMDDI 412 (518)
Q Consensus 335 ~~~~~a~l~EA~W~~~g~vPt~eEYl~~~~~S~g~~~~~~~--~~~~~g~~l~~ev~e~~~~~~~i~~~~~~i~RL~NDI 412 (518)
..++.|-..+..|...+..||.++|+..-..-+|..+..++ .-...| .+++ ...++-...+...-+.||+
T Consensus 147 ~~~~~GQ~lDl~~~~~~~~~~~~~y~~i~~~KTg~L~~~~~~~ga~lag--~~~~------~l~~~g~~lG~aFQI~DDi 218 (297)
T 3m0g_A 147 EGMVYGQALDIAAETAAVPLTLDEIIRLQAGKTGALISFAAQAGAILAG--ADRG------PLTAYATALGLAFQIADDI 218 (297)
T ss_dssp TTHHHHHHHHHHHTTSSSCCCHHHHHHHHHHHTHHHHHHHHHHHHHHHT--CCCH------HHHHHHHHHHHHHHHHTTC
T ss_pred hHHHHhHHHHHHhhhcCCCCCHHHHHHHHccchHHHHHHHHHHHHHHcC--CCHH------HHHHHHHHHHHHHHHHHHH
Confidence 55778888888887656789999999975544444332221 111223 2333 1245667778888899999
Q ss_pred cchhhhh-hcCC-----Cc----hHHHHHHhhcccCCcccCHHHHHHHHHHHHHHHHHHHHh
Q 035568 413 KSHKFEQ-ERGH-----AA----SAIECYMKEKEREGVSVTEQEVHEELYKKVGDAWKDINE 464 (518)
Q Consensus 413 ~S~~kE~-~~G~-----~~----n~V~cym~e~~~~g~~vS~eeA~~~i~~~i~~~~k~ln~ 464 (518)
..+.-+. ..|+ .. +.+.+ + | .+.|.+.+.+.++++...+..
T Consensus 219 lD~~~~~~~~GK~~g~Dl~~gK~T~p~l----~---~----l~~a~~~~~~~~~~A~~~L~~ 269 (297)
T 3m0g_A 219 LDVEGNEEAAGKRLGKDAEAHKATFVSL----L---G----LAGAKSRAADLVAEAEAALAP 269 (297)
T ss_dssp C---------------------CCHHHH----H---C----SSHHHHHHHHHHHHHHHHTGG
T ss_pred HhccCCHHHhCCCccchhhcCCccHHHH----H---H----HHHHHHHHHHHHHHHHHHHHh
Confidence 9885432 2222 11 33322 2 3 366788888888888877754
No 34
>3llw_A Geranyltranstransferase (ISPA); structural genomics, PSI, protein structure initiative, nysgrc; 2.30A {Helicobacter pylori} PDB: 3q1o_A*
Probab=36.21 E-value=81 Score=31.25 Aligned_cols=114 Identities=11% Similarity=0.144 Sum_probs=65.5
Q ss_pred HHHHHHHHHHHHhHhcCCCCCChHHHHhhhhcccchhHHHHHH--HHhcCCCCchHHH-hhccCchHHHHHHhhhhhhcc
Q 035568 334 MKILVHGYHDESKWFHNNYVPTMEEYMRVSLVTSGYSMLTAAS--FLGMDSVVTKEAF-DWVSGKPKIIRASTIIGRLMD 410 (518)
Q Consensus 334 ~~~~~~a~l~EA~W~~~g~vPt~eEYl~~~~~S~g~~~~~~~~--~~~~g~~l~~ev~-e~~~~~~~i~~~~~~i~RL~N 410 (518)
...++.|-..+..|. +..||.++|+..-..-+|..+..++. -...| .+++.. +.+ .++-...+...-+.|
T Consensus 158 ~~~m~~GQ~lDl~~~--~~~~t~~~y~~i~~~KTg~L~~~a~~lga~lag--a~~~~~~~~l---~~~g~~lGlaFQI~D 230 (311)
T 3llw_A 158 IKGMILGQALDCYFE--NTPLNLEQLTFLHEHKTAKLISASLIMGLVASG--IKDEELFKWL---QAFGLKMGLCFQVLD 230 (311)
T ss_dssp TTTHHHHHHHHHHTT--TSCCCHHHHHHHHHHHTHHHHHHHHHHHHHHHC--CCCHHHHHHH---HHHHHHHHHHHHHHH
T ss_pred HHHHHHhHHHHHHhc--CCCCCHHHHHHHHHHhHHHHHHHHHHHHHHHcC--CCHHHHHHHH---HHHHHHHHHHHHHHH
Confidence 345677777777775 46789999998855444444332221 11113 334433 332 556677788888999
Q ss_pred Cccchhhh-hhcCCCchHHHHHHhhcccCCcccC------HHHHHHHHHHHHHHHHHHHHh
Q 035568 411 DIKSHKFE-QERGHAASAIECYMKEKEREGVSVT------EQEVHEELYKKVGDAWKDINE 464 (518)
Q Consensus 411 DI~S~~kE-~~~G~~~n~V~cym~e~~~~g~~vS------~eeA~~~i~~~i~~~~k~ln~ 464 (518)
|+..+.-+ ...|+.... ++. . .| .+.|.+..+++++++.+.+..
T Consensus 231 DiLD~~gd~~~~GK~~g~-----~~g---K--~T~p~l~~l~~a~~~~~~~~~~a~~~l~~ 281 (311)
T 3llw_A 231 DIIDVTQDEEESGKTTHL-----DSA---K--NSFVNLLGLERANNYAQTLKTEVLNDLDA 281 (311)
T ss_dssp HHHHHHC------------------C---C--SCHHHHHCHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHhccCChHHHCccccc-----ccC---c--chHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 99888653 334443221 222 2 33 578888888888888877753
No 35
>3ts7_A Geranyltranstransferase; isoprenoid synthesis, farnesyl diphosphate synthase; 1.94A {Methylococcus capsulatus}
Probab=34.75 E-value=1.2e+02 Score=30.26 Aligned_cols=113 Identities=12% Similarity=0.095 Sum_probs=65.7
Q ss_pred HHHHHHHHHHHhHhcCCCCCChHHHHhhhhcccchhHHHHHHHHh-cCCCCchHHHhhccCchHHHHHHhhhhhhccCcc
Q 035568 335 KILVHGYHDESKWFHNNYVPTMEEYMRVSLVTSGYSMLTAASFLG-MDSVVTKEAFDWVSGKPKIIRASTIIGRLMDDIK 413 (518)
Q Consensus 335 ~~~~~a~l~EA~W~~~g~vPt~eEYl~~~~~S~g~~~~~~~~~~~-~g~~l~~ev~e~~~~~~~i~~~~~~i~RL~NDI~ 413 (518)
..++.|-..+-.|... .||.++|+..-..-+|.-+..++..-+ ++...+++..+.+ .++-...+...-+.||+.
T Consensus 158 ~~m~~GQ~lDl~~~~~--~~t~~~y~~i~~~KTg~L~~~a~~~Ga~lag~a~~~~~~~l---~~~g~~lGlAFQI~DDiL 232 (324)
T 3ts7_A 158 AGMVGGQAIDLASVGK--KLDLPGLENMHIRKTGALIRASVRLACLARPGLPAEQFDRL---DHYAKCIGLAFQIQDDIL 232 (324)
T ss_dssp TTHHHHHHHHHHTTTC--CCCHHHHHHHHHHHTHHHHHHHHHHHHTTSTTCCHHHHHHH---HHHHHHHHHHHHHHHHHH
T ss_pred hHHHHhHHHHHHccCC--CCCHHHHHHHHHhhHHHHHHHHHHHHHHHcCCCCHHHHHHH---HHHHHHHHHHHHHHHHHH
Confidence 4567787777787643 789999999854444444333222111 1222455544442 556677788888889988
Q ss_pred chhhh-hhcCC-----C----chHHHHHHhhcccCCcccCHHHHHHHHHHHHHHHHHHHH
Q 035568 414 SHKFE-QERGH-----A----ASAIECYMKEKEREGVSVTEQEVHEELYKKVGDAWKDIN 463 (518)
Q Consensus 414 S~~kE-~~~G~-----~----~n~V~cym~e~~~~g~~vS~eeA~~~i~~~i~~~~k~ln 463 (518)
.+..+ ...|+ . .+.+.+ + | .|.|.+.+.+.++++...+.
T Consensus 233 D~~~d~~~~GK~~g~Dl~egK~T~p~l----~---g----le~a~~~a~~~~~~A~~~L~ 281 (324)
T 3ts7_A 233 DEESDTQTLGKTRGKDRDHNKPNYPAL----L---G----LSGAKEKAEEMHEAALESLA 281 (324)
T ss_dssp HHTCC---------------CCCHHHH----H---C----HHHHHHHHHHHHHHHHHTTT
T ss_pred hccCCHHHhCCCccchhhcCCccHHHH----H---H----HHHHHHHHHHHHHHHHHHHH
Confidence 77532 12222 1 123322 2 2 57888888888888876654
No 36
>1uby_A FPS, farnesyl diphosphate synthase; transferase, isoprene biosynthesis, cholesterol biosynthesis; HET: DMA; 2.40A {Gallus gallus} SCOP: a.128.1.1 PDB: 1ubw_A* 1ubv_A* 1ubx_A* 1fps_A
Probab=34.23 E-value=1.5e+02 Score=29.88 Aligned_cols=105 Identities=10% Similarity=-0.033 Sum_probs=67.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHhHhcCCC----CCChHHHHhhhhcccchh-HH--HHHHHHhcCCCCchHHHhhccCchHH
Q 035568 326 RVHYAKEEMKILVHGYHDESKWFHNNY----VPTMEEYMRVSLVTSGYS-ML--TAASFLGMDSVVTKEAFDWVSGKPKI 398 (518)
Q Consensus 326 ~~~~~k~~~~~~~~a~l~EA~W~~~g~----vPt~eEYl~~~~~S~g~~-~~--~~~~~~~~g~~l~~ev~e~~~~~~~i 398 (518)
.+..+.+....++.|-+.+..|...+. .+|.++|+..-..-+|.. +. +.+.....|. .+++..+.+ .++
T Consensus 170 ~~~~~~~~~~~~~~GQ~lDl~~~~~~~~d~~~~t~~~y~~ii~~KTa~Lsf~~~~~~ga~lag~-~~~~~~~~l---~~~ 245 (367)
T 1uby_A 170 LLELFLQTAYQTELGQMLDLITAPVSKVDLSHFSEERYKAIVKYKTAFYSFYLPVAAAMYMVGI-DSKEEHENA---KAI 245 (367)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHSCTTSCCCTTCCHHHHHHHHHHHTHHHHTHHHHHHHHHHHTC-CCHHHHHHH---HHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhcccccccccccCCHHHHHHHHHhCchHHHHHHHHHHHHHHcCC-ccHHHHHHH---HHH
Confidence 466677788889999999999976543 589999999866655554 22 2222222341 345544442 566
Q ss_pred HHHHhhhhhhccCccchhhh----------hhcCCCchHHHHHHhhc
Q 035568 399 IRASTIIGRLMDDIKSHKFE----------QERGHAASAIECYMKEK 435 (518)
Q Consensus 399 ~~~~~~i~RL~NDI~S~~kE----------~~~G~~~n~V~cym~e~ 435 (518)
-...+...-+.||+..+.-. ...|.. +.+.++.-++
T Consensus 246 g~~lG~aFQI~DD~LD~~gd~~~~GK~g~Dl~egK~-T~p~l~al~~ 291 (367)
T 1uby_A 246 LLEMGEYFQIQDDYLDCFGDPALTGAVGTDIQDNKC-SWLVVQCLQR 291 (367)
T ss_dssp HHHHHHHHHHHHHHHHHHCCTTCSSCCCCCSSSCCC-CHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhcCChhhcCCchhhHHcCCc-hHHHHHHHHh
Confidence 77888888889998877532 233443 6666666665
No 37
>2qis_A Farnesyl pyrophosphate synthetase; trans-prenyltransferase, structural genomics, structural GEN consortium, SGC, transferase; HET: RIS; 1.80A {Homo sapiens} PDB: 4dem_F* 1yv5_A* 1yq7_A* 2opm_A* 2opn_A* 3cp6_A* 2rah_A* 2vf6_A* 1zw5_A* 3b7l_A* 3s4j_A* 3rye_A* 3n45_F* 2f89_F* 2f7m_F* 2f8z_F* 2f8c_F* 2f92_F* 2f9k_F* 3n1v_F* ...
Probab=33.75 E-value=1.9e+02 Score=29.26 Aligned_cols=105 Identities=10% Similarity=-0.029 Sum_probs=68.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHhHhcCCC----CCChHHHHhhhhcccchh-HH--HHHHHHhcCCCCchHHHhhccCchHH
Q 035568 326 RVHYAKEEMKILVHGYHDESKWFHNNY----VPTMEEYMRVSLVTSGYS-ML--TAASFLGMDSVVTKEAFDWVSGKPKI 398 (518)
Q Consensus 326 ~~~~~k~~~~~~~~a~l~EA~W~~~g~----vPt~eEYl~~~~~S~g~~-~~--~~~~~~~~g~~l~~ev~e~~~~~~~i 398 (518)
.+..+.+....++.|-+.+..|...+. .||+++|+..-..-+|.. +. +.+.....| ..+++..+.+ .++
T Consensus 177 ~~~~~~~~~~~~~~GQ~lDl~~~~~~~~d~~~~t~~~y~~i~~~KTa~Lsf~~~~~~ga~lag-~a~~~~~~~l---~~~ 252 (374)
T 2qis_A 177 LIELFLQSSYQTEIGQTLDLLTAPQGNVDLVRFTEKRYKSIVKYKSAFYSFYLPIAAAMYMAG-IDGEKEHANA---KKI 252 (374)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHSCTTCCCGGGCCHHHHHHHHHHHTHHHHTHHHHHHHHHHTT-CCCHHHHHHH---HHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHcccccccccccCCHHHHHHHHHcCccHHHHHHHHHHHHHHcC-CCcHHHHHHH---HHH
Confidence 466677888889999999999876544 389999999876655554 22 222223223 1355555443 567
Q ss_pred HHHHhhhhhhccCccchhhh----------hhcCCCchHHHHHHhhc
Q 035568 399 IRASTIIGRLMDDIKSHKFE----------QERGHAASAIECYMKEK 435 (518)
Q Consensus 399 ~~~~~~i~RL~NDI~S~~kE----------~~~G~~~n~V~cym~e~ 435 (518)
-...+...-+.||+..+.-. ...|.. +.+.++.-+.
T Consensus 253 g~~lG~aFQI~DDiLD~~gd~~~~GK~g~Dl~~gK~-T~p~l~al~~ 298 (374)
T 2qis_A 253 LLEMGEFFQIQDDYLDLFGDPSVTGKIGTDIQDNKC-SWLVVQCLQR 298 (374)
T ss_dssp HHHHHHHHHHHHHHHHHHSCHHHHCSCCCTTTTTCC-CHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHccCChhhcCCchhHHHcCCc-cHHHHHHHHh
Confidence 77888888899999877532 233443 6666776665
No 38
>3lsn_A Geranyltranstransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium, nysgxrc; HET: MSE; 1.35A {Pseudomonas fluorescens} PDB: 3lji_A* 3p41_A*
Probab=33.30 E-value=1.8e+02 Score=28.56 Aligned_cols=112 Identities=12% Similarity=0.006 Sum_probs=65.8
Q ss_pred HHHHHHHHHhHhcCCCCCChHHHHhhhhcccchhHHHHHHHH-hcCCCCchHHHhhccCchHHHHHHhhhhhhccCccch
Q 035568 337 LVHGYHDESKWFHNNYVPTMEEYMRVSLVTSGYSMLTAASFL-GMDSVVTKEAFDWVSGKPKIIRASTIIGRLMDDIKSH 415 (518)
Q Consensus 337 ~~~a~l~EA~W~~~g~vPt~eEYl~~~~~S~g~~~~~~~~~~-~~g~~l~~ev~e~~~~~~~i~~~~~~i~RL~NDI~S~ 415 (518)
++.|-..+..|... .||.++|+..-..-+|..+..++..- .++...+++..+.+ .++-...+...-+.||+..+
T Consensus 154 ~~~GQ~lDl~~~~~--~~s~~~y~~i~~~KTg~L~~~~~~~ga~lag~~~~~~~~~l---~~~g~~lGlaFQI~DDilD~ 228 (304)
T 3lsn_A 154 MVGGQAIDLGSVGL--KLDQQALEYMHRHKTGALIEASVILGALASGRAEKGELKAL---QTYAQAIGLAFQVQDDILDV 228 (304)
T ss_dssp HHHHHHHHHHTTTC--CCCHHHHHHHHHHHTHHHHHHHHHHHHHHTTCCCHHHHHHH---HHHHHHHHHHHHHHHHHHHH
T ss_pred HhHhHHHHHHccCC--CCCHHHHHHHHHhhhHHHHHHHHHHHHHHcCCCCHHHHHHH---HHHHHHHHHHHHHHHHHHhc
Confidence 67777777787643 48999999885444443333222111 11222155544442 56677788888899999888
Q ss_pred hhhh-hcCCC-----c----hHHHHHHhhcccCCcccCHHHHHHHHHHHHHHHHHHHHh
Q 035568 416 KFEQ-ERGHA-----A----SAIECYMKEKEREGVSVTEQEVHEELYKKVGDAWKDINE 464 (518)
Q Consensus 416 ~kE~-~~G~~-----~----n~V~cym~e~~~~g~~vS~eeA~~~i~~~i~~~~k~ln~ 464 (518)
.-+. ..|+. . +.+.+ + | .+.|.+.+.+.++++.+.+..
T Consensus 229 ~~~~~~~GK~~g~Dl~egK~T~p~l----~---~----l~~a~~~a~~~~~~A~~~L~~ 276 (304)
T 3lsn_A 229 ESDTATLGKRQGADIARDKPTYPAL----L---G----LAAAKEYALELRDQALHALRP 276 (304)
T ss_dssp HHHHHHC------------CCHHHH----H---C----HHHHHHHHHHHHHHHHHHTTT
T ss_pred cCChHHhCCCcccHHhcCCccHHHH----H---H----HHHHHHHHHHHHHHHHHHHHh
Confidence 6532 22331 1 22221 2 2 578888888888888877653
No 39
>3p8l_A Geranyltranstransferase; isoprenyl synthase, structural genomics, PSI, protein struct initiative, nysgrc; 2.00A {Enterococcus faecalis}
Probab=33.22 E-value=1.1e+02 Score=30.10 Aligned_cols=112 Identities=13% Similarity=0.074 Sum_probs=64.3
Q ss_pred HHHHHHHHHHHhHhcCCCCCChHHHHhhhhcccchhHHHHHH--HHhcCCCCchHHHhhccCchHHHHHHhhhhhhccCc
Q 035568 335 KILVHGYHDESKWFHNNYVPTMEEYMRVSLVTSGYSMLTAAS--FLGMDSVVTKEAFDWVSGKPKIIRASTIIGRLMDDI 412 (518)
Q Consensus 335 ~~~~~a~l~EA~W~~~g~vPt~eEYl~~~~~S~g~~~~~~~~--~~~~g~~l~~ev~e~~~~~~~i~~~~~~i~RL~NDI 412 (518)
..++.|-..+..|.. ..||.++|...-..-+|..+..++. -...| .+++..+.+ .++-...+...-+.||+
T Consensus 156 ~~~~~GQ~lDl~~~~--~~~t~~~y~~i~~~KTg~L~~~~~~~ga~lag--a~~~~~~~l---~~~g~~lGlaFQI~DDi 228 (302)
T 3p8l_A 156 QGMVSGQMGDIEGEK--VSLTLEELAAVHEKKTGALIEFALIAGGVLAN--QTEEVIGLL---TQFAHHYGLAFQIRDDL 228 (302)
T ss_dssp TTHHHHHHHHHHTTT--SCCCHHHHHHHHHHHTHHHHHHHHHHHHHHTT--CCHHHHHHH---HHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHccC--CCCCHHHHHHHHHcCcHHHHHHHHHHHHHHcC--CCHHHHHHH---HHHHHHHHHHHHHHHHH
Confidence 346677777777753 3789999998744433433322221 12222 345544432 55667778888889998
Q ss_pred cchhhh-hhcCC-----Cc----hHHHHHHhhcccCCcccCHHHHHHHHHHHHHHHHHHHHh
Q 035568 413 KSHKFE-QERGH-----AA----SAIECYMKEKEREGVSVTEQEVHEELYKKVGDAWKDINE 464 (518)
Q Consensus 413 ~S~~kE-~~~G~-----~~----n~V~cym~e~~~~g~~vS~eeA~~~i~~~i~~~~k~ln~ 464 (518)
..+.-+ ...|+ .. +...+ + ..+.|.+.+.+.++++.+.+..
T Consensus 229 lD~~~d~~~~GK~~g~Dl~egK~T~p~l----~-------~l~~a~~~~~~~~~~A~~~L~~ 279 (302)
T 3p8l_A 229 LDATSTEADLGKKVGRDEALNKSTYPAL----L-------GIAGAKDALTHQLAEGSAVLEK 279 (302)
T ss_dssp HHTTC-----------------CCHHHH----H-------CHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhccCCHHHhCCChhhHHhcCCCcHHHH----H-------HHHHHHHHHHHHHHHHHHHHHh
Confidence 877432 11222 11 22221 2 2578888888888888887765
No 40
>3p8r_A Geranyltranstransferase; isoprenyl synthase, structural genomics, PSI, protein struct initiative, nysgrc; 2.50A {Vibrio cholerae} SCOP: a.128.1.1
Probab=33.05 E-value=68 Score=31.60 Aligned_cols=113 Identities=13% Similarity=0.069 Sum_probs=65.0
Q ss_pred HHHHHHHHHHHhHhcCCCCCChHHHHhhhhcccchhHHHHHHHHh--cCCCCchHHHhhccCchHHHHHHhhhhhhccCc
Q 035568 335 KILVHGYHDESKWFHNNYVPTMEEYMRVSLVTSGYSMLTAASFLG--MDSVVTKEAFDWVSGKPKIIRASTIIGRLMDDI 412 (518)
Q Consensus 335 ~~~~~a~l~EA~W~~~g~vPt~eEYl~~~~~S~g~~~~~~~~~~~--~g~~l~~ev~e~~~~~~~i~~~~~~i~RL~NDI 412 (518)
..++.|-..+..|. +..||.++|+..-..-+|..+..++ ..| ++...+++..+. ..++-...+...-+.||+
T Consensus 158 ~~~~~GQ~lDl~~~--~~~~s~~~y~~i~~~KTa~L~~~~~-~~ga~lag~~~~~~~~~---l~~~g~~lG~aFQI~DDi 231 (302)
T 3p8r_A 158 QGMCLGQALDLAAE--NRLISLEELETIHRNKTGALMRCAI-RLGALAAGEKGRAMLPH---LDRYAEAVGLAFQVQDDI 231 (302)
T ss_dssp TTHHHHHHHHHHTT--TSCCCHHHHHHHHHHHTHHHHHHHH-HHHHHTTTHHHHTTHHH---HHHHHHHHHHHHHHHHHH
T ss_pred hHHHHhHHHHHHcc--CCCCCHHHHHHHhccCcHHHHHHHH-HHHHHHcCCCCHHHHHH---HHHHHHHHHHHHHHHHHH
Confidence 45778888888886 3578999999985544444333222 221 121123333322 245667778888888998
Q ss_pred cchhhh-hhcCCC---------chHHHHHHhhcccCCcccCHHHHHHHHHHHHHHHHHHHHh
Q 035568 413 KSHKFE-QERGHA---------ASAIECYMKEKEREGVSVTEQEVHEELYKKVGDAWKDINE 464 (518)
Q Consensus 413 ~S~~kE-~~~G~~---------~n~V~cym~e~~~~g~~vS~eeA~~~i~~~i~~~~k~ln~ 464 (518)
..+.-+ ...|+. .+.+.+| ..+.|.+.+.+.++++.+.++.
T Consensus 232 lD~~~~~~~~GK~~g~Dl~egK~T~p~l~-----------~l~~a~~~a~~~~~~A~~~L~~ 282 (302)
T 3p8r_A 232 LDIISDTETLGKPQGSDQELNKSTYPALL-----------GLEGAQQKAHTLLQEALLALEA 282 (302)
T ss_dssp HHHTTC---------------CCCHHHHH-----------HHHHHHHHHHHHHHHHHHHHTT
T ss_pred HhccCCHHHhCCCcchHHhcCCchHHHHH-----------HHHHHHHHHHHHHHHHHHHHHh
Confidence 877542 222321 1233222 2477788888888888877754
No 41
>3pde_A Farnesyl-diphosphate synthase; isoprenyl diphosphate synthase, structural genomics, PSI, PR structure initiative; HET: IPE; 1.75A {Lactobacillus brevis} PDB: 3m9u_A*
Probab=31.68 E-value=1.3e+02 Score=29.81 Aligned_cols=110 Identities=8% Similarity=0.002 Sum_probs=64.4
Q ss_pred HHHHHHHHHHhHhcCCCCCChHHHHhhhhcccchhHHHHHH--HHhcCCCCchHHHhhccCchHHHHHHhhhhhhccCcc
Q 035568 336 ILVHGYHDESKWFHNNYVPTMEEYMRVSLVTSGYSMLTAAS--FLGMDSVVTKEAFDWVSGKPKIIRASTIIGRLMDDIK 413 (518)
Q Consensus 336 ~~~~a~l~EA~W~~~g~vPt~eEYl~~~~~S~g~~~~~~~~--~~~~g~~l~~ev~e~~~~~~~i~~~~~~i~RL~NDI~ 413 (518)
.++.|-..+..|. +..||.++|...-..-+|..+..++. -...| .+++..+. ..++-...+...-+.||+.
T Consensus 156 ~m~~GQ~lDl~~~--~~~~t~~~y~~i~~~KTg~L~~~a~~~ga~lag--a~~~~~~~---l~~~g~~lGlaFQI~DDiL 228 (309)
T 3pde_A 156 GMVAGQAKDIQSE--HVNLPLSQLRVLHKEKTGALLHYAVQAGLILGQ--APEAQWPA---YLQFADAFGLAFQIYDDIL 228 (309)
T ss_dssp THHHHHHHHHHTT--TCCCCHHHHHHHHHHHTHHHHHHHHHHHHHHTT--CCGGGHHH---HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhHHHHHHcc--CCCCCHHHHHHHHHhccHHHHHHHHHHHHHHcC--CCHHHHHH---HHHHHHHHHHHHHHHHHHH
Confidence 4566767777775 34689999998854444443332221 12223 34443333 2556677778888889988
Q ss_pred chhhh-----------hhcCCCchHHHHHHhhcccCCcccCHHHHHHHHHHHHHHHHHHHHh
Q 035568 414 SHKFE-----------QERGHAASAIECYMKEKEREGVSVTEQEVHEELYKKVGDAWKDINE 464 (518)
Q Consensus 414 S~~kE-----------~~~G~~~n~V~cym~e~~~~g~~vS~eeA~~~i~~~i~~~~k~ln~ 464 (518)
.+.-. ...|+. +.+.+| ..+.|.+...++++++...+..
T Consensus 229 D~~gd~~~~GK~~g~Dl~egK~-T~p~l~-----------al~~a~~~~~~~~~~a~~~l~~ 278 (309)
T 3pde_A 229 DVVSSPAEMGKATQKDADEAKN-TYPGKL-----------GLIGANQALIDTIHSGQAALQG 278 (309)
T ss_dssp HHHCC-----------CTTTSS-SHHHHH-----------CHHHHHHHHHHHHHHHHHHHHT
T ss_pred hccCCHHHhCCCccchhhcCCc-cHHHHH-----------HHHHhHHHHHHHHHHHHHHHHH
Confidence 77432 222332 333322 2466777888888888877754
No 42
>2h8o_A Geranyltranstransferase; geranyltransferase,agrobacterium tumefaciens, structural GEN PSI-2, protein structure initiative; 1.60A {Agrobacterium tumefaciens}
Probab=30.82 E-value=94 Score=31.10 Aligned_cols=112 Identities=13% Similarity=0.108 Sum_probs=68.3
Q ss_pred HHHHHHHHHHHhHhcCCCCCChHHHHhhhhcccchhHHHHHHH--HhcCCCCchHHHhhccCchHHHHHHhhhhhhccCc
Q 035568 335 KILVHGYHDESKWFHNNYVPTMEEYMRVSLVTSGYSMLTAASF--LGMDSVVTKEAFDWVSGKPKIIRASTIIGRLMDDI 412 (518)
Q Consensus 335 ~~~~~a~l~EA~W~~~g~vPt~eEYl~~~~~S~g~~~~~~~~~--~~~g~~l~~ev~e~~~~~~~i~~~~~~i~RL~NDI 412 (518)
..++.|-..+..|... .+|.++|+..-..-+|..+..++.. ...| .+++..+.+ .++-...+...-+.||+
T Consensus 192 ~~~~~GQ~lDl~~~~~--~~~~~~y~~i~~~KTa~L~~~a~~~Ga~lag--a~~~~~~~l---~~~g~~lGlAFQI~DDi 264 (335)
T 2h8o_A 192 GGMAGGQALDLAAEKK--APDEDGIITLQAMKTGALLRFACEAGAIIAG--SNQAERQRL---RLFGEKIGLSFQLADDL 264 (335)
T ss_dssp TSHHHHHHHHHHHHHS--CCCHHHHHHHHHHHTHHHHHHHHHHHHHHHT--CCHHHHHHH---HHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHccCC--CCCHHHHHHHHHhchHHHHHHHHHHHHHHhC--CCHHHHHHH---HHHHHHHHHHHHHHHHH
Confidence 5577787778888654 6899999998766555544322211 2223 455555443 56677788888899999
Q ss_pred cchhhhh-hcCCC---------chHHHHHHhhcccCCcccCHHHHHHHHHHHHHHHHHHHHh
Q 035568 413 KSHKFEQ-ERGHA---------ASAIECYMKEKEREGVSVTEQEVHEELYKKVGDAWKDINE 464 (518)
Q Consensus 413 ~S~~kE~-~~G~~---------~n~V~cym~e~~~~g~~vS~eeA~~~i~~~i~~~~k~ln~ 464 (518)
..+.-+. ..|+. .+...+ + | .|.|.+.+.+.++++.+.+..
T Consensus 265 LD~~gd~~~~GK~~g~Dl~egK~T~p~l----~---~----le~a~~~a~~~~~~A~~~L~~ 315 (335)
T 2h8o_A 265 LDLTADAATMGKATGKDAARGKGTLVAL----R---G----EAWAREKLQEQVAEASELLAP 315 (335)
T ss_dssp HHHC-----------------CCCHHHH----H---C----HHHHHHHHHHHHHHHHHHTGG
T ss_pred HHhcCCHHHhCCCcchHHhcCCccHHHH----H---H----HHHHHHHHHHHHHHHHHHHHh
Confidence 8875421 22221 123221 2 3 577888888888888877754
No 43
>2q80_A Geranylgeranyl pyrophosphate synthetase; isoprenoid pathway, isopentenyl transferase, structural GENO structural genomics consortium, SGC; HET: GRG; 2.70A {Homo sapiens} SCOP: a.128.1.1
Probab=29.58 E-value=2.2e+02 Score=27.85 Aligned_cols=84 Identities=18% Similarity=0.212 Sum_probs=57.2
Q ss_pred chHHHHHHHHHHHHHHHHHHHhHhcCCCCCChHHHHhhhhcccchhHHHHHHHHhc-CCCCchHHHhhccCchHHHHHHh
Q 035568 325 YRVHYAKEEMKILVHGYHDESKWFHNNYVPTMEEYMRVSLVTSGYSMLTAASFLGM-DSVVTKEAFDWVSGKPKIIRAST 403 (518)
Q Consensus 325 ~~~~~~k~~~~~~~~a~l~EA~W~~~g~vPt~eEYl~~~~~S~g~~~~~~~~~~~~-g~~l~~ev~e~~~~~~~i~~~~~ 403 (518)
.....+.+.+..++.|-..+..|......||.++|+..-..-+|..+..++..-+. +. .+ +...++-...+
T Consensus 111 ~~~~~~~~~~~~~~~GQ~~dl~~~~~~~~~~~~~y~~~i~~KTa~L~~~~~~~ga~~a~-~~-------~~l~~~g~~lG 182 (301)
T 2q80_A 111 DAVKLFTRQLLELHQGQGLDIYWRDNYTCPTEEEYKAMVLQKTGGLFGLAVGLMQLFSD-YK-------EDLKPLLNTLG 182 (301)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHHHHHHHHHTCC-CC-------SCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccCCCCCCHHHHHHHHHcccHHHHHHHHHHHHHHCC-Ch-------HHHHHHHHHHH
Confidence 34666788889999999999999876668999999998766555544333222111 11 12 12356667778
Q ss_pred hhhhhccCccchh
Q 035568 404 IIGRLMDDIKSHK 416 (518)
Q Consensus 404 ~i~RL~NDI~S~~ 416 (518)
...-+.||+..+.
T Consensus 183 ~aFQi~DD~ld~~ 195 (301)
T 2q80_A 183 LFFQIRDDYANLH 195 (301)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhhc
Confidence 8888888887764
No 44
>3lom_A Geranyltranstransferase; geranyltransferase, structural genomics, PSI, protein structure initiative, nysgrc; 2.30A {Legionella pneumophila subsp}
Probab=28.50 E-value=1.6e+02 Score=29.12 Aligned_cols=114 Identities=14% Similarity=0.082 Sum_probs=67.6
Q ss_pred HHHHHHHHHHHhHhcCCCCCChHHHHhhhhcccchhHHHHHHHHhcCCC-CchHHHhhccCchHHHHHHhhhhhhccCcc
Q 035568 335 KILVHGYHDESKWFHNNYVPTMEEYMRVSLVTSGYSMLTAASFLGMDSV-VTKEAFDWVSGKPKIIRASTIIGRLMDDIK 413 (518)
Q Consensus 335 ~~~~~a~l~EA~W~~~g~vPt~eEYl~~~~~S~g~~~~~~~~~~~~g~~-l~~ev~e~~~~~~~i~~~~~~i~RL~NDI~ 413 (518)
..++.|-..+..|... ..||.++|...-..-+|.-+..++....++.. .+++..+.+ .++-...+...-+.||+.
T Consensus 158 ~~m~~GQ~lDl~~~~~-~~~t~~~y~~i~~~KTg~L~~~a~~~a~lag~~a~~~~~~~l---~~~g~~lGlaFQI~DDil 233 (313)
T 3lom_A 158 SGMVSGQSLDLSELAK-SSVTEEQLREIHLLKTGKLILACFEMVLAAQHEVSEQIKSAL---RTYGKHIGLVFQMQDDYL 233 (313)
T ss_dssp TTHHHHHHHHHHTTTS-SCCCHHHHHHHHHHHTHHHHHHHHHHHHTTCSSCCHHHHHHH---HHHHHHHHHHHHHHHHHH
T ss_pred hHHHHhHHHHHHccCC-CCCCHHHHHHHHHcCcHHHHHHHHHHHHHhCCCCCHHHHHHH---HHHHHHHHHHHHHHHHHH
Confidence 3567787778887543 37899999988654444433332222223332 556555543 566777888888899998
Q ss_pred chhhhh-hcCC-----Cc----hHHHHHHhhcccCCcccCHHHHHHHHHHHHHHHHHHHH
Q 035568 414 SHKFEQ-ERGH-----AA----SAIECYMKEKEREGVSVTEQEVHEELYKKVGDAWKDIN 463 (518)
Q Consensus 414 S~~kE~-~~G~-----~~----n~V~cym~e~~~~g~~vS~eeA~~~i~~~i~~~~k~ln 463 (518)
.+.-+. ..|+ .. +.+.+ + ..+.|.+.+.+.++++.+.+.
T Consensus 234 D~~gd~~~~GK~~g~Dl~~gK~T~p~l----~-------~l~~a~~~a~~~~~~A~~~L~ 282 (313)
T 3lom_A 234 DLYAPTQILGKGRSSDQANQKTTFATL----F-------NKQQLEEEIAVHYQIAMDSLR 282 (313)
T ss_dssp HHHCC---------------CCCHHHH----S-------CHHHHHHHHHHHHHHHHHTTT
T ss_pred hccCCHHhhCCCCcchhhcCCccHHHH----H-------HHHHHHHHHHHHHHHHHHHHH
Confidence 875421 2222 11 22211 2 368888888888888887664
No 45
>4f62_A Geranyltranstransferase; enzyme function initiative, structural genomics; 2.10A {Marinomonas SP}
Probab=27.16 E-value=2.6e+02 Score=27.65 Aligned_cols=113 Identities=14% Similarity=0.078 Sum_probs=64.8
Q ss_pred HHHHHHHHHHhHhcCCCCCChHHHHhhhhcccchhHHHHHHHH-hcCCCCchHHHhhccCchHHHHHHhhhhhhccCccc
Q 035568 336 ILVHGYHDESKWFHNNYVPTMEEYMRVSLVTSGYSMLTAASFL-GMDSVVTKEAFDWVSGKPKIIRASTIIGRLMDDIKS 414 (518)
Q Consensus 336 ~~~~a~l~EA~W~~~g~vPt~eEYl~~~~~S~g~~~~~~~~~~-~~g~~l~~ev~e~~~~~~~i~~~~~~i~RL~NDI~S 414 (518)
.++.|-..+..|. +..||.++|+..-..-+|.-+..++..- .++...+++..+.+ .++-...+...-+.||+..
T Consensus 152 ~m~~GQ~lDl~~~--~~~~t~~~y~~i~~~KTg~L~~~a~~~Ga~lag~a~~~~~~~l---~~~g~~lGlAFQI~DDiLD 226 (317)
T 4f62_A 152 GMITGQMIDLSSE--NKNISLAELEQMHVHKTGALIKASVRMGALSTGQVKPEQLAKL---DAYAHAIGLAFQVQDDIID 226 (317)
T ss_dssp THHHHHHHHHHTS--SSCCCHHHHHHHHHHHTHHHHHHHHHHHHHTTTCCCHHHHHHH---HHHHHHHHHHHHHHHHHHH
T ss_pred hHHHhHHHHHhcc--CCCCCHHHHHHHHHhchHHHHHHHHHHHHHHcCCCCHHHHHHH---HHHHHHHHHHHHHHHHHHh
Confidence 4667777777775 3458999999985444444333222111 11222455544442 5566777888888999887
Q ss_pred hhhh-hhcCCC---------chHHHHHHhhcccCCcccCHHHHHHHHHHHHHHHHHHHHh
Q 035568 415 HKFE-QERGHA---------ASAIECYMKEKEREGVSVTEQEVHEELYKKVGDAWKDINE 464 (518)
Q Consensus 415 ~~kE-~~~G~~---------~n~V~cym~e~~~~g~~vS~eeA~~~i~~~i~~~~k~ln~ 464 (518)
+.-+ ...|+. .+.+.+| | .+.|.+.+.+.++++.+.+..
T Consensus 227 ~~gd~~~~GK~~g~Dl~egK~T~p~l~-------g----le~a~~~a~~~~~~A~~~L~~ 275 (317)
T 4f62_A 227 LTSDTETLGKTQFSDAEANKATYPKLL-------G----LDGAKALVVRLHEQAIAQISE 275 (317)
T ss_dssp TC----------------CCCCHHHHH-------H----HHHHHHHHHHHHHHHHHHHGG
T ss_pred ccCChHhhCCCcchHHhcCCCcHHHHH-------H----HHHHHHHHHHHHHHHHHHHHh
Confidence 7432 122221 1333222 2 577888888888888877764
No 46
>3npk_A Geranyltranstransferase; isoprene biosynthesis, SGX, structural genomics protein structure initiative; 1.50A {Campylobacter jejuni}
Probab=26.43 E-value=2.7e+02 Score=27.07 Aligned_cols=114 Identities=11% Similarity=0.055 Sum_probs=63.8
Q ss_pred HHHHHHHHHHHHhHhcCCCCCChHHHHhhhhcccchhHHHHHHHHh--cCCCCchHHHhhccCchHHHHHHhhhhhhccC
Q 035568 334 MKILVHGYHDESKWFHNNYVPTMEEYMRVSLVTSGYSMLTAASFLG--MDSVVTKEAFDWVSGKPKIIRASTIIGRLMDD 411 (518)
Q Consensus 334 ~~~~~~a~l~EA~W~~~g~vPt~eEYl~~~~~S~g~~~~~~~~~~~--~g~~l~~ev~e~~~~~~~i~~~~~~i~RL~ND 411 (518)
...++.|-..+..|.. ..||.++|...-..-+|..+..++ ..+ ++ ..+++..+. ..++-...+...-+.||
T Consensus 144 ~~~~~~GQ~lDl~~~~--~~~~~~~y~~i~~~KTg~L~~~a~-~~ga~la-ga~~~~~~~---l~~~g~~lGlaFQI~DD 216 (291)
T 3npk_A 144 LNGMVIGQAIDCFFED--KRLSLNELEFLHTHKTARLIAAAL-KMGCEIC-ELNNEESNQ---IYKLGLKLGLIFQINDD 216 (291)
T ss_dssp TTTHHHHHHHHHHTTT--SCCCHHHHHHHHHHHTHHHHHHHH-HHHHHHT-TCCHHHHHH---HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccC--CCCCHHHHHHHHHcccHHHHHHHH-HHHHHHc-CCCHHHHHH---HHHHHHHHHHHHHHHHH
Confidence 4556777777777753 468999999885544444433222 121 12 234544443 25667778888888999
Q ss_pred ccchhhh-hhcCCCchHHHHHHhhcccCCccc------CHHHHHHHHHHHHHHHHHHHHh
Q 035568 412 IKSHKFE-QERGHAASAIECYMKEKEREGVSV------TEQEVHEELYKKVGDAWKDINE 464 (518)
Q Consensus 412 I~S~~kE-~~~G~~~n~V~cym~e~~~~g~~v------S~eeA~~~i~~~i~~~~k~ln~ 464 (518)
+..+.-. ...|+... . .+. . . ..+.|.+...++++++.+.++.
T Consensus 217 iLD~~gd~~~~GK~~~-~----d~g---K--~T~p~l~~l~~a~~~~~~~~~~a~~~l~~ 266 (291)
T 3npk_A 217 IIDVTTSQEQSGKPTN-N----DIH---K--NSFVNLLGLEQAIKTKENLLNECEQDLEK 266 (291)
T ss_dssp HHHHC--------------------------CCHHHHHCHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHhccCChHHHCCccc-h----hcC---c--chHHHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence 9887643 23343321 0 121 1 2 2577778888888888877753
No 47
>1yhl_A Farnesyl pyrophosphate synthase; farnesyl diphosphate synthase, bisphosphonate, dimethyl ALLY pyrophosphate sulfate, FPPS, transferase; HET: DMA RIS; 1.95A {Trypanosoma cruzi} PDB: 1yhk_A* 1yhm_A* 3iba_A* 3ick_A* 3icm_A* 3icn_A* 3icz_A* 3id0_A*
Probab=26.06 E-value=1.6e+02 Score=29.46 Aligned_cols=105 Identities=10% Similarity=0.000 Sum_probs=65.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHhHh-----------cCCC----CCChHHHHhhhhcccchh-HH--HHHHHHhcCCCCchH
Q 035568 326 RVHYAKEEMKILVHGYHDESKWF-----------HNNY----VPTMEEYMRVSLVTSGYS-ML--TAASFLGMDSVVTKE 387 (518)
Q Consensus 326 ~~~~~k~~~~~~~~a~l~EA~W~-----------~~g~----vPt~eEYl~~~~~S~g~~-~~--~~~~~~~~g~~l~~e 387 (518)
.+..+.+....++.|-+.+..|. ..+. .||.++|+..-..-+|.. +. +.+.....|. .+++
T Consensus 152 ~~~~~~~~~~~~~~GQ~ldl~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~KTa~Ls~~~~~~~ga~lag~-~~~~ 230 (362)
T 1yhl_A 152 LLCLFQKVDYATAVGQMYDVTSMCDSNKLDPEVAQPMTTDFAEFTPAIYKRIVKYKTTFYTYLLPLVMGLFVSEA-AASV 230 (362)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTTBCGGGCCTTSCCCBCSSCTTCSHHHHHHHHHHHTHHHHTHHHHHHHHHHTTC-GGGS
T ss_pred HHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccCCHHHHHHHHHhcCcHHHHHHHHHHHHHHcCC-CCHH
Confidence 46667788889999999999987 3223 489999999866655554 22 2222233331 2333
Q ss_pred HHhhccCchHHHHHHhhhhhhccCccchhhh----------hhcCCCchHHHHHHhhc
Q 035568 388 AFDWVSGKPKIIRASTIIGRLMDDIKSHKFE----------QERGHAASAIECYMKEK 435 (518)
Q Consensus 388 v~e~~~~~~~i~~~~~~i~RL~NDI~S~~kE----------~~~G~~~n~V~cym~e~ 435 (518)
..+. ..++-...+...-+.||+..+.-. ...|.. +..-+|.-++
T Consensus 231 ~~~~---l~~~g~~lG~aFQi~DD~lD~~~d~~~~GK~g~Dl~egK~-T~p~l~al~~ 284 (362)
T 1yhl_A 231 EMNL---VERVAHLIGEYFQVQDDVMDCFTPPEQLGKVGTDIEDAKC-SWLAVTFLGK 284 (362)
T ss_dssp CHHH---HHHHHHHHHHHHHHHHHHHHHHSCHHHHSSCCCTTTTTCC-CHHHHHHHTT
T ss_pred HHHH---HHHHHHHHHHHHHHHHHHHhccCChHHhCCChhhHhcCCc-hHHHHHHHHh
Confidence 3332 245667778888889998877532 233444 6666676664
No 48
>2her_A Fragment, farnesyl pyrophosphate synthase; farnesyl diphosphate synthase, structural genomics, structural genomics consortium, SGC; HET: ZOL; 2.37A {Cryptosporidium parvum} PDB: 2o1o_A* 2q58_A*
Probab=25.50 E-value=3e+02 Score=27.80 Aligned_cols=104 Identities=11% Similarity=-0.014 Sum_probs=63.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHhHhcCCCCCCh-HHHHhhhhcccchh-H--HHHHHHHhcCCCCchHH--HhhccCchHHH
Q 035568 326 RVHYAKEEMKILVHGYHDESKWFHNNYVPTM-EEYMRVSLVTSGYS-M--LTAASFLGMDSVVTKEA--FDWVSGKPKII 399 (518)
Q Consensus 326 ~~~~~k~~~~~~~~a~l~EA~W~~~g~vPt~-eEYl~~~~~S~g~~-~--~~~~~~~~~g~~l~~ev--~e~~~~~~~i~ 399 (518)
.+..+.++...++.|-+.+..|...+..+++ ++|+..-..-+|.. + .+.+.....|. +++. .+ ...++-
T Consensus 169 ~~~~~~~~~~~~~~GQ~lDl~~~~~~~~~~~~~~y~~ii~~KTa~Lsf~~~~~lGa~lag~--~~~~~~~~---~l~~~g 243 (368)
T 2her_A 169 IQKIYNESIFFTVLGQHLDLSYFDLSKADKISERYFSMVEMKTSRYTFYMPVFFGLTLSEI--QVSSAQLN---LIEAIL 243 (368)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCSCCCSSCSSHHHHHHHHHHHHTHHHHTHHHHHHHHHHSCC--CCCCSSTT---THHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcccCCCCChHHHHHHHHHccchHHHHHHHHHHHHHHcCC--ChhHHHHH---HHHHHH
Confidence 4666788888999999999998776634445 99998865555544 2 22222333342 3322 22 235667
Q ss_pred HHHhhhhhhccCccchh------hhhhcCCCchHHHHHHhhc
Q 035568 400 RASTIIGRLMDDIKSHK------FEQERGHAASAIECYMKEK 435 (518)
Q Consensus 400 ~~~~~i~RL~NDI~S~~------kE~~~G~~~n~V~cym~e~ 435 (518)
...+...-+.||+..+- .+...|.. +..-++.-++
T Consensus 244 ~~lG~aFQI~DD~LD~~~~GK~g~Dl~egK~-T~pvi~al~~ 284 (368)
T 2her_A 244 YKLGEFYQVHNDVSDYLFNDSNADDICRFKL-TWPLQKSFEI 284 (368)
T ss_dssp HHHHHHHHHHHHHHHHHSCCSSSCTTTTTCC-CHHHHSSTTT
T ss_pred HHHHHHHHHHHHHHHHHhcCCCCChHhCCcc-cHHHHHHHHh
Confidence 77788888888887764 12334443 4554555543
No 49
>1rqj_A Geranyltranstransferase; bisphosphonate, isoprenyl synthase; HET: IPR RIS; 1.95A {Escherichia coli} SCOP: a.128.1.1 PDB: 1rqi_A* 2for_A*
Probab=25.13 E-value=2e+02 Score=28.12 Aligned_cols=114 Identities=11% Similarity=0.073 Sum_probs=68.6
Q ss_pred HHHHHHHHHHHhHhcCCCCCChHHHHhhhhcccchhHHHHHHHHhcC-CCCchHHHhhccCchHHHHHHhhhhhhccCcc
Q 035568 335 KILVHGYHDESKWFHNNYVPTMEEYMRVSLVTSGYSMLTAASFLGMD-SVVTKEAFDWVSGKPKIIRASTIIGRLMDDIK 413 (518)
Q Consensus 335 ~~~~~a~l~EA~W~~~g~vPt~eEYl~~~~~S~g~~~~~~~~~~~~g-~~l~~ev~e~~~~~~~i~~~~~~i~RL~NDI~ 413 (518)
..++.|-..+..|... .+|.++|+..-..-+|..+..++..-++- -..+++..+. ..++-...+...-+.||+.
T Consensus 152 ~~~~~GQ~~dl~~~~~--~~~~~~y~~i~~~KTa~L~~~~~~~ga~l~ag~~~~~~~~---l~~~g~~lG~aFQi~DD~l 226 (299)
T 1rqj_A 152 AGMCGGQALDLDAEGK--HVPLDALERIHRHKTGALIRAAVRLGALSAGDKGRRALPV---LDKYAESIGLAFQVQDDIL 226 (299)
T ss_dssp TTHHHHHHHHHHTTTT--CCCHHHHHHHHHHHTHHHHHHHHHHHHHTTTHHHHHHHHH---HHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHhHHHHHhccCC--CCCHHHHHHHHHhhhHHHHHHHHHHHHHHhCCCCHHHHHH---HHHHHHHHHHHHHHHHHHH
Confidence 4567888888888643 78999999986555554433222111110 1134444443 3566677888888999998
Q ss_pred chhhhh-hcCCC-c--------hHHHHHHhhcccCCcccCHHHHHHHHHHHHHHHHHHHHh
Q 035568 414 SHKFEQ-ERGHA-A--------SAIECYMKEKEREGVSVTEQEVHEELYKKVGDAWKDINE 464 (518)
Q Consensus 414 S~~kE~-~~G~~-~--------n~V~cym~e~~~~g~~vS~eeA~~~i~~~i~~~~k~ln~ 464 (518)
.+.-+. ..|+. . +...+| | .+.|.+.+.+.++++.+.+..
T Consensus 227 D~~~~~~~~GK~~g~Dl~~gK~T~p~l~-------~----l~~a~~~~~~~~~~A~~~L~~ 276 (299)
T 1rqj_A 227 DVVGDTATLGKRQGADQQLGKSTYPALL-------G----LEQARKKARDLIDDARQSLKQ 276 (299)
T ss_dssp HHHSCHHHHSSCTTHHHHHTCCCHHHHH-------C----HHHHHHHHHHHHHHHHHHHHH
T ss_pred hccCCHHHhCCChhhHHHcCCCcHHHHH-------H----HHHHHHHHHHHHHHHHHHHHh
Confidence 875432 23331 1 233221 2 466778888888888887765
No 50
>1v4e_A Octoprenyl-diphosphate synthase; trans-type prenyltransferase, thermophilic; 2.28A {Thermotoga maritima} SCOP: a.128.1.1 PDB: 1v4j_A 1wkz_A 1vg2_A 1wl3_A 1wl0_A 1wl2_A 1v4h_A 1v4i_A 1v4k_A 2azl_A 1wl1_A 1vg4_A 1vg3_A 1vg6_A 1vg7_A
Probab=24.45 E-value=2.2e+02 Score=27.80 Aligned_cols=100 Identities=20% Similarity=-0.038 Sum_probs=61.9
Q ss_pred chHHHHHHHHHHHHHHHHHHHhHhcCCCCCChHHHHhhhhcccchhHHHHH--HHHhcCCCCchHHHhhccCchHHHHHH
Q 035568 325 YRVHYAKEEMKILVHGYHDESKWFHNNYVPTMEEYMRVSLVTSGYSMLTAA--SFLGMDSVVTKEAFDWVSGKPKIIRAS 402 (518)
Q Consensus 325 ~~~~~~k~~~~~~~~a~l~EA~W~~~g~vPt~eEYl~~~~~S~g~~~~~~~--~~~~~g~~l~~ev~e~~~~~~~i~~~~ 402 (518)
..+..+.++...++.|-..+..|.... ||.++|+..-..-+|..+..++ .-...|. +++ . ..++-...
T Consensus 127 ~~~~~~~~~~~~~~~GQ~~dl~~~~~~--~~~~~y~~~i~~KTa~L~~~~~~~ga~lag~--~~~---~---l~~~g~~l 196 (299)
T 1v4e_A 127 KLRRAFLNVIGKMSEAELIEQLSRYKP--ITKEEYLRIVEGKSGALFGLALQLPALLEGE--LGE---D---LYNLGVTI 196 (299)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTTSC--CCHHHHHHHHHHHTHHHHHHHHHHHHHHHTC--CCH---H---HHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhHHHHHHccCCC--CCHHHHHHHHHhccHHHHHHHHHHHHHHcCC--CHH---H---HHHHHHHH
Confidence 456777888899999999999997654 9999999886665555433222 1122232 111 1 23455666
Q ss_pred hhhhhhccCccchhhh----------hhcCCCchHHHHHHhhc
Q 035568 403 TIIGRLMDDIKSHKFE----------QERGHAASAIECYMKEK 435 (518)
Q Consensus 403 ~~i~RL~NDI~S~~kE----------~~~G~~~n~V~cym~e~ 435 (518)
+...-+.||+..+.-+ ...|.. +...+|..++
T Consensus 197 G~aFQi~DD~lD~~~d~~~GK~~g~Dl~egK~-T~p~l~al~~ 238 (299)
T 1v4e_A 197 GTIYQMFDDIMDFAGMEKIGKDGFLDLKNGVA-SFPLVTAMEK 238 (299)
T ss_dssp HHHHHHHHHHHHHTTCCSCCTTSSCCCTTTTC-CHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCccccCCCcchHhhCCCc-hHHHHHHHHh
Confidence 6677777777766433 223443 5666666665
No 51
>2azj_A Geranylgeranyl pyrophosphate synthetase; hexpps, trans-prenyltransferase; 2.40A {Sulfolobus solfataricus} PDB: 2azk_A
Probab=24.44 E-value=2.8e+02 Score=26.85 Aligned_cols=117 Identities=12% Similarity=0.025 Sum_probs=69.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHhHhcCCCCCChHHHHhhhhcccchhHHHHHHHH-hcCCCCchHHHhhccCchHHHHHHhh
Q 035568 326 RVHYAKEEMKILVHGYHDESKWFHNNYVPTMEEYMRVSLVTSGYSMLTAASFL-GMDSVVTKEAFDWVSGKPKIIRASTI 404 (518)
Q Consensus 326 ~~~~~k~~~~~~~~a~l~EA~W~~~g~vPt~eEYl~~~~~S~g~~~~~~~~~~-~~g~~l~~ev~e~~~~~~~i~~~~~~ 404 (518)
.+..+.++...++.|-+.+..| .++|++.-..-+|..+..++..- .++ .+++..+.+ .++-...+.
T Consensus 136 ~~~~~~~~~~~~~~GQ~~dl~~--------~~~y~~~i~~KTa~L~~~a~~~ga~la--~~~~~~~~l---~~~g~~lG~ 202 (289)
T 2azj_A 136 ALNTSIELWKDTSVGALRDMYD--------NSDYIRTIELKTGSLFKLSTVLSAYAS--KHYNTKQQM---LDVGKYLGI 202 (289)
T ss_dssp HHHHHHHHHHHHHHHHHHTTTT--------TSCHHHHHHHHTHHHHHHHHHHHHHHT--TCGGGHHHH---HHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhh--------HHHHHHHHHcchHHHHHHHHHHHHHHc--CCHHHHHHH---HHHHHHHHH
Confidence 4566677777788887766654 68898876555555443322111 123 344444432 456677778
Q ss_pred hhhhccCccchhhh----hhcCCCchHHHHHHhhcccCCcccCHHHH-HHHHHHHHHHHHHHHHh
Q 035568 405 IGRLMDDIKSHKFE----QERGHAASAIECYMKEKEREGVSVTEQEV-HEELYKKVGDAWKDINE 464 (518)
Q Consensus 405 i~RL~NDI~S~~kE----~~~G~~~n~V~cym~e~~~~g~~vS~eeA-~~~i~~~i~~~~k~ln~ 464 (518)
..-+.||+..+..+ ...|. .+...+| +. .+.++| ...+.+.++++.+.+..
T Consensus 203 aFQi~DDilD~~~~~K~dl~~gk-~Tlp~l~--~~------~g~~~a~~~~a~~~~~~A~~~L~~ 258 (289)
T 2azj_A 203 IYQVIDDFVDYKTKKVEEIDGSA-KQLFKYY--RE------GKLEEYVRSVYLEYKQKYDELISN 258 (289)
T ss_dssp HHHHHHHHHHHTTSCTTTCCTTG-GGGHHHH--TT------TCHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHhhhhhcCCCChhhhcCc-ccHHHHH--Hc------CCHHHHHHHHHHHHHHHHHHHHHh
Confidence 88888888776432 22232 4677667 33 245777 44577777777776654
No 52
>3aqb_B Component B of hexaprenyl diphosphate synthase; prenyltransferase, transferase; 2.40A {Micrococcus luteus} PDB: 3aqc_B*
Probab=24.28 E-value=1.5e+02 Score=29.22 Aligned_cols=89 Identities=11% Similarity=0.081 Sum_probs=59.3
Q ss_pred chHHHHHHHHHHHHHHHHHHHhHhcCCCCCChHHHHhhhhcccchhHHHHHHHHhcCCCCchHHHhhccCchHHHHHHhh
Q 035568 325 YRVHYAKEEMKILVHGYHDESKWFHNNYVPTMEEYMRVSLVTSGYSMLTAASFLGMDSVVTKEAFDWVSGKPKIIRASTI 404 (518)
Q Consensus 325 ~~~~~~k~~~~~~~~a~l~EA~W~~~g~vPt~eEYl~~~~~S~g~~~~~~~~~~~~g~~l~~ev~e~~~~~~~i~~~~~~ 404 (518)
..+..+.++...++.|-..+..|... ..||.++|+..-..-+|..+..++..-++--..+++..+.+ .++-...+.
T Consensus 130 ~~~~~~~~~~~~~~~GQ~~dl~~~~~-~~~~~~~y~~~i~~KTa~L~~~~~~~ga~lag~~~~~~~~l---~~~g~~lG~ 205 (325)
T 3aqb_B 130 KFHQIFSKTILEVCFGEFDQMADRFN-YPVSFTAYLRRINRKTAILIEASCHLGALSSQLDEQSTYHI---KQFGHCIGM 205 (325)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTTC-CCCCHHHHHHHHHHHTHHHHHHHHHHHHHTTTCCHHHHHHH---HHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcccC-CCCCHHHHHHHHHhhHHHHHHHHHHHHHHHcCCCHHHHHHH---HHHHHHHHH
Confidence 35667778888999999999998653 35899999998766665554333222211112455544442 566777888
Q ss_pred hhhhccCccchhh
Q 035568 405 IGRLMDDIKSHKF 417 (518)
Q Consensus 405 i~RL~NDI~S~~k 417 (518)
..-+.||+..+.-
T Consensus 206 afQi~DD~ld~~~ 218 (325)
T 3aqb_B 206 SYQIIDDILDYTS 218 (325)
T ss_dssp HHHHHHHHHHHHS
T ss_pred HHHHHHHHHhccC
Confidence 8888999887753
No 53
>2e8v_A Geranylgeranyl pyrophosphate synthetase; prenyltransferase, farnesyl pyrophosphate, bisphosphonate; HET: GRG; 1.80A {Saccharomyces cerevisiae} PDB: 2e8t_A* 2e8u_A* 2dh4_A* 2e8w_A* 2e8x_A* 2e90_A* 2e91_A* 2e92_A* 2e93_A* 2e94_A* 2e95_A* 2z4v_A* 2z4w_A* 2z4x_A* 2z4y_A* 2z4z_A* 2z50_A* 2z52_A* 2z78_A* 2z7h_A* ...
Probab=23.95 E-value=1.2e+02 Score=30.30 Aligned_cols=103 Identities=18% Similarity=0.078 Sum_probs=64.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHhHhcCC--CCCChHHHHhhhhcccchhHHHHHHH--HhcCCCCchHHHhhccCchHHHHH
Q 035568 326 RVHYAKEEMKILVHGYHDESKWFHNN--YVPTMEEYMRVSLVTSGYSMLTAASF--LGMDSVVTKEAFDWVSGKPKIIRA 401 (518)
Q Consensus 326 ~~~~~k~~~~~~~~a~l~EA~W~~~g--~vPt~eEYl~~~~~S~g~~~~~~~~~--~~~g~~l~~ev~e~~~~~~~i~~~ 401 (518)
.+..+.+....++.|-..+..|.... ..||.++|+..-..-+|..+..++.. ...|. +++ . ....++-..
T Consensus 132 ~~~~~~~~~~~~~~GQ~ldl~~~~~~~~~~~t~~~y~~~i~~KTa~L~~~~~~~ga~lag~--~~~-~---~~l~~~g~~ 205 (340)
T 2e8v_A 132 LITIFNEELINLHRGQGLDIYWRDFLPEIIPTQEMYLNMVMNKTGGLFRLTLRLMEALSPS--SHH-G---HSLVPFINL 205 (340)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHSTTSCCCCHHHHHHHHHHHTHHHHHHHHHHHHHHCCC------------CHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhcccccCCCCHHHHHHHHHhhhHHHHHHHHHHHHHHcCC--cHH-H---HHHHHHHHH
Confidence 45566777888999999999998755 57899999998766555544333221 22232 221 1 334677788
Q ss_pred HhhhhhhccCccchhhh-----------hhcCCCchHHHHHHhhc
Q 035568 402 STIIGRLMDDIKSHKFE-----------QERGHAASAIECYMKEK 435 (518)
Q Consensus 402 ~~~i~RL~NDI~S~~kE-----------~~~G~~~n~V~cym~e~ 435 (518)
.+...-+.||+..+--+ ...|.. +..-+|..++
T Consensus 206 lG~aFQi~DD~ld~~~~~~~~GK~~g~Dl~egK~-Tlp~i~al~~ 249 (340)
T 2e8v_A 206 LGIIYQIRDDYLNLKDFQMSSEKGFAEDITEGKL-SFPIVHALNF 249 (340)
T ss_dssp HHHHHHHHHHHHHHHC-----CCCTTHHHHTTCC-CHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccCChhhhCCCchhhHhcCCc-hHHHHHHHHh
Confidence 88889999999877432 333444 5555665554
No 54
>2ee7_A Sperm flagellar protein 1; all alpha protein, CH domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=23.32 E-value=41 Score=29.01 Aligned_cols=28 Identities=21% Similarity=0.442 Sum_probs=20.4
Q ss_pred HhhHHHHHHHHHHHHHhCCCCCCc-hhhh
Q 035568 203 SLYKIELSEISRWWKDLDFARKLP-FARD 230 (518)
Q Consensus 203 ~~hq~El~~l~rWwk~~~l~~~l~-faRd 230 (518)
.+--+|++++.+|..+++|..... ..||
T Consensus 11 ~l~~ee~~el~~WL~~l~Ls~~~rn~rRD 39 (127)
T 2ee7_A 11 SVDEEALHQLYLWVDNIPLSRPKRNLSRD 39 (127)
T ss_dssp SCCHHHHHHHHHHHHHSCCSCCSSCHHHH
T ss_pred CCCHHHHHHHHHHHHcCCCCCCCCchhhh
Confidence 455789999999999999854433 4454
No 55
>3uca_A Geranyltranstransferase; isoprenoid synthesis, isoprenoid diphosphate synthase; 2.00A {Clostridium perfringens}
Probab=21.85 E-value=2.3e+02 Score=28.15 Aligned_cols=117 Identities=10% Similarity=0.032 Sum_probs=66.0
Q ss_pred HHHHHHHHHHHhHhcCCCCCChHHHHhhhhcccchhHHHHHHH--HhcCCCCchHHHhhccCchHHHHHHhhhhhhccCc
Q 035568 335 KILVHGYHDESKWFHNNYVPTMEEYMRVSLVTSGYSMLTAASF--LGMDSVVTKEAFDWVSGKPKIIRASTIIGRLMDDI 412 (518)
Q Consensus 335 ~~~~~a~l~EA~W~~~g~vPt~eEYl~~~~~S~g~~~~~~~~~--~~~g~~l~~ev~e~~~~~~~i~~~~~~i~RL~NDI 412 (518)
..++.|-..+..|... ..||.++|...-..-+|.-+..++.. ...| .+++..+.+ .++-...+...-+.||+
T Consensus 180 ~~m~~GQ~lDl~~~~~-~~~t~~~y~~i~~~KTa~L~~~a~~~Ga~lag--a~~~~~~~l---~~~g~~lGlAFQI~DDi 253 (324)
T 3uca_A 180 DGMIGGQIVDIINEDK-EEISLKELDYMHLKKTGELIKASIMSGAVLAE--ASEGDIKKL---EGFGYKLGLAFQIKDDI 253 (324)
T ss_dssp TTHHHHHHHHHHTSSC-SSCCHHHHHHHHHHHTHHHHHHHHHHHHHHTT--CCHHHHHHH---HHHHHHHHHHHHHHHHH
T ss_pred hHHHHhHHHHHHcCCC-CCCCHHHHHHHHhcchHHHHHHHHHHHHHHcC--CCHHHHHHH---HHHHHHHHHHHHHHHHH
Confidence 4577888888888643 36899999998544334333322211 1122 345544432 55667778888888998
Q ss_pred cchhhh-hhcCC-----CchHHHHHHhhcccCCcccCHHHHHHHHHHHHHHHHHHHHh
Q 035568 413 KSHKFE-QERGH-----AASAIECYMKEKEREGVSVTEQEVHEELYKKVGDAWKDINE 464 (518)
Q Consensus 413 ~S~~kE-~~~G~-----~~n~V~cym~e~~~~g~~vS~eeA~~~i~~~i~~~~k~ln~ 464 (518)
..+.-+ ...|+ ..+...-|..=+ | .+.|.+.+.+.++++.+.+..
T Consensus 254 LD~~gd~~~~GK~~g~Dl~egK~T~p~l~---a----l~~a~~~a~~~~~~A~~~L~~ 304 (324)
T 3uca_A 254 LDVVGNAKDLGKNVHKDQESNKNNYITIF---G----LEECKKKCVNITEECIEILSS 304 (324)
T ss_dssp HHHCCC-----------------CHHHHH---C----HHHHHHHHHHHHHHHHHHHHT
T ss_pred HhccCCHHHhCCCcchHhhcCCccHHHHH---H----HHHHHHHHHHHHHHHHHHHHh
Confidence 877432 11222 211111111112 3 588888899999988888764
No 56
>3tc1_A Octaprenyl pyrophosphate synthase; all alpha-helices fold, transferase; 2.00A {Helicobacter pylori}
Probab=21.70 E-value=5.7e+02 Score=24.97 Aligned_cols=100 Identities=9% Similarity=0.005 Sum_probs=61.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHhHhcCCCCCChHHHHhhhhcccchhHHHHH--HHHhcCCCCchHHHhhccCchHHHHHHh
Q 035568 326 RVHYAKEEMKILVHGYHDESKWFHNNYVPTMEEYMRVSLVTSGYSMLTAA--SFLGMDSVVTKEAFDWVSGKPKIIRAST 403 (518)
Q Consensus 326 ~~~~~k~~~~~~~~a~l~EA~W~~~g~vPt~eEYl~~~~~S~g~~~~~~~--~~~~~g~~l~~ev~e~~~~~~~i~~~~~ 403 (518)
....+.++...++.|-+.+..|.. +..||.++|+..-..-+|..+..++ .-...|.. . + ....+-...+
T Consensus 123 ~~~~~~~~~~~~~~GQ~~dl~~~~-~~~~~~~~y~~~i~~KTa~L~~~~~~~ga~lag~~--~---~---~l~~~g~~lG 193 (315)
T 3tc1_A 123 IAQALSNAVLRLSRGEIEDVFVGE-CFNSDKQKYWRILEDKTAHFIEASLKSMAILLNKD--A---K---IYADFGLNFG 193 (315)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTT-SCCCCHHHHHHHHHHHTHHHHHHHHHHHHHHTTSC--H---H---HHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCC-CCCCCHHHHHHHHhcchHHHHHHHHHHHHHHcCCC--H---H---HHHHHHHHHH
Confidence 456677888889999999999865 3468999999876555554443222 11222322 1 1 1245566677
Q ss_pred hhhhhccCccchhh-----------hhhcCCCchHHHHHHhhc
Q 035568 404 IIGRLMDDIKSHKF-----------EQERGHAASAIECYMKEK 435 (518)
Q Consensus 404 ~i~RL~NDI~S~~k-----------E~~~G~~~n~V~cym~e~ 435 (518)
...-+.||+..+-- +...|.. +...+|..++
T Consensus 194 ~aFQI~DD~ld~~~d~~~~GK~~g~Dl~egK~-T~p~i~al~~ 235 (315)
T 3tc1_A 194 MAFQIIDDLLDITQDAKTLGKPNFSDFKEGKT-TLPYLLLYEK 235 (315)
T ss_dssp HHHHHHHHHHTTSCCTTCCCCCCCCTGGGTCC-CHHHHHHHTT
T ss_pred HHHHHHHHHhcccCCHHHhCCChhhHHHcCCh-hHHHHHHHHh
Confidence 77777888776632 2233443 6666676665
No 57
>2of3_A ZYG-9; multifunctional macromolecule, kinetochore, microtubule, XMAP215, STU2, DIS1, microtubule associated protein, structural protein; 1.90A {Caenorhabditis elegans}
Probab=21.43 E-value=48 Score=32.23 Aligned_cols=89 Identities=16% Similarity=0.137 Sum_probs=54.3
Q ss_pred cccchHHHHHHHHHHHHHHhhcc------CcChhhhhHHHHHHHHhCCccccHHHHHHHHHHHHHhcccCcCCCCC----
Q 035568 4 YHGGQSQEIEELKEEVRRELLGS------GVDSLSRLKLIDAILRLGVGYQFERELEEALQNLYDAFSNNFYNIED---- 73 (518)
Q Consensus 4 ~~~~~~~~~~~lk~~v~~~l~~~------~~~~~~~l~liD~lqrLGi~~hF~~EI~~~L~~~~~~~~~~~~~~~~---- 73 (518)
|+..-.+.++.|++++...+... +.|..+++.-+|.|+.. ++. =.+|+-..||-+++..+- .+....
T Consensus 28 f~~p~~e~v~~L~~~~~~~~~~~~~~~lfs~d~k~~~~ale~L~~~-l~~-~~~~~~~~lDll~kw~~l-r~~d~N~~v~ 104 (266)
T 2of3_A 28 FQAPTDEHISQLQTLLGNQAKVSLMSQLFHKDFKQHLAALDSLVRL-ADT-SPRSLLSNSDLLLKWCTL-RFFETNPAAL 104 (266)
T ss_dssp CSSCCHHHHHHHHHHHHTTBCHHHHHHHTCSCHHHHHHHHHHHHHH-HHH-CHHHHHHTHHHHHHHHHH-HTTSCCHHHH
T ss_pred CCCCCHHHHHHHHHHHHHhccHHHHHHhcCCCHHHHHHHHHHHHHH-hhh-ChHHHHHHHHHHHHHHHH-HHhCCCHHHH
Confidence 34443567777887776554321 45777889888888884 322 345666777777762110 001010
Q ss_pred -CChhHHHHHHHHhhhcCceech
Q 035568 74 -NDLYHVALRFRILRQRGYKVSC 95 (518)
Q Consensus 74 -~dl~~~al~FRlLR~hGy~vS~ 95 (518)
.=|..+...|-.|++.||..+.
T Consensus 105 ~~~L~~L~~l~~~l~~~~y~~~~ 127 (266)
T 2of3_A 105 IKVLELCKVIVELIRDTETPMSQ 127 (266)
T ss_dssp HHHHHHHHHHHHHHHHTTCCCCH
T ss_pred HHHHHHHHHHHHHHHhccccchH
Confidence 1366677778889999999984
Done!