BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 035573
(95 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1K30|A Chain A, Crystal Structure Analysis Of Squash (Cucurbita Moschata)
Glycerol-3-Phosphate (1)-Acyltransferase
Length = 368
Score = 109 bits (273), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 46/61 (75%), Positives = 56/61 (91%)
Query: 14 VFQSGNSRADEIVLSNMAVAFDRVLLDIEEPFTFSSYHKSMREPFDYYMFGQNYIRPLVD 73
V +SGN +ADEIVLSNM VA DR+LLD+E+PF FSS+HK++REPFDYY+FGQNYIRPL+D
Sbjct: 49 VIESGNPKADEIVLSNMTVALDRILLDVEDPFVFSSHHKAIREPFDYYIFGQNYIRPLID 108
Query: 74 F 74
F
Sbjct: 109 F 109
>pdb|1IUQ|A Chain A, The 1.55 A Crystal Structure Of Glycerol-3-phosphate
Acyltransferase
Length = 367
Score = 109 bits (272), Expect = 5e-25, Method: Composition-based stats.
Identities = 45/61 (73%), Positives = 55/61 (90%)
Query: 14 VFQSGNSRADEIVLSNMAVAFDRVLLDIEEPFTFSSYHKSMREPFDYYMFGQNYIRPLVD 73
V +SGN +ADEIVLSN VA DR+LLD+E+PF FSS+HK++REPFDYY+FGQNYIRPL+D
Sbjct: 48 VIESGNPKADEIVLSNXTVALDRILLDVEDPFVFSSHHKAIREPFDYYIFGQNYIRPLID 107
Query: 74 F 74
F
Sbjct: 108 F 108
>pdb|3N1X|A Chain A, X-Ray Crystal Structure Of TolueneO-Xylene Monooxygenase
Hydroxylase T201c Mutant
Length = 498
Score = 27.3 bits (59), Expect = 2.1, Method: Composition-based stats.
Identities = 17/65 (26%), Positives = 30/65 (46%), Gaps = 2/65 (3%)
Query: 10 DMFQVFQSGNSRADEIVLSNMAVAFDRVLLD--IEEPFTFSSYHKSMREPFDYYMFGQNY 67
D + +S N E +L + F+R LLD +++P+ + + + + E G Y
Sbjct: 278 DYYTPLESRNQSFKEFMLEWIVAQFERQLLDLGLDKPWYWDQFMQDLDETHHGMHLGVWY 337
Query: 68 IRPLV 72
RP V
Sbjct: 338 WRPTV 342
>pdb|1T0Q|A Chain A, Structure Of The Toluene/o-xylene Monooxygenase
Hydroxylase
pdb|1T0R|A Chain A, Crystal Structure Of The TolueneO-Xylene Monooxygenase
Hydroxuylase From Pseudomonas Stutzeri-Azide Bound
pdb|1T0S|A Chain A, Structure Of The TolueneO-Xylene Monooxygenase Hydroxylase
With 4- Bromophenol Bound
Length = 498
Score = 27.3 bits (59), Expect = 2.1, Method: Composition-based stats.
Identities = 17/65 (26%), Positives = 30/65 (46%), Gaps = 2/65 (3%)
Query: 10 DMFQVFQSGNSRADEIVLSNMAVAFDRVLLD--IEEPFTFSSYHKSMREPFDYYMFGQNY 67
D + +S N E +L + F+R LLD +++P+ + + + + E G Y
Sbjct: 278 DYYTPLESRNQSFKEFMLEWIVAQFERQLLDLGLDKPWYWDQFMQDLDETHHGMHLGVWY 337
Query: 68 IRPLV 72
RP V
Sbjct: 338 WRPTV 342
>pdb|3RNB|A Chain A, Structure Of The TolueneO-Xylene Monooxygenase Hydroxylase
T201sF176W DOUBLE MUTANT
Length = 498
Score = 27.3 bits (59), Expect = 2.1, Method: Composition-based stats.
Identities = 17/65 (26%), Positives = 30/65 (46%), Gaps = 2/65 (3%)
Query: 10 DMFQVFQSGNSRADEIVLSNMAVAFDRVLLD--IEEPFTFSSYHKSMREPFDYYMFGQNY 67
D + +S N E +L + F+R LLD +++P+ + + + + E G Y
Sbjct: 278 DYYTPLESRNQSFKEFMLEWIVAQFERQLLDLGLDKPWYWDQFMQDLDETHHGMHLGVWY 337
Query: 68 IRPLV 72
RP V
Sbjct: 338 WRPTV 342
>pdb|2RDB|A Chain A, X-Ray Crystal Structure Of TolueneO-Xylene Monooxygenase
Hydroxylase I100w Mutant
Length = 498
Score = 27.3 bits (59), Expect = 2.1, Method: Composition-based stats.
Identities = 17/65 (26%), Positives = 30/65 (46%), Gaps = 2/65 (3%)
Query: 10 DMFQVFQSGNSRADEIVLSNMAVAFDRVLLD--IEEPFTFSSYHKSMREPFDYYMFGQNY 67
D + +S N E +L + F+R LLD +++P+ + + + + E G Y
Sbjct: 278 DYYTPLESRNQSFKEFMLEWIVAQFERQLLDLGLDKPWYWDQFMQDLDETHHGMHLGVWY 337
Query: 68 IRPLV 72
RP V
Sbjct: 338 WRPTV 342
>pdb|2QPT|A Chain A, Crystal Structure Of An Ehd Atpase Involved In Membrane
Remodelling
Length = 550
Score = 26.6 bits (57), Expect = 3.4, Method: Composition-based stats.
Identities = 16/55 (29%), Positives = 25/55 (45%), Gaps = 5/55 (9%)
Query: 11 MFQVFQSGNSR-----ADEIVLSNMAVAFDRVLLDIEEPFTFSSYHKSMREPFDY 60
MF + G +R A V S++ + LL +EE + F S+H E D+
Sbjct: 8 MFSWLKKGGARGQRPEAIRTVTSSLKELYRTKLLPLEEHYRFGSFHSPALEDADF 62
>pdb|3RNA|A Chain A, Structure Of The TolueneO-Xylene Monooxygenase Hydroxylase
T201sI100W DOUBLE MUTANT
Length = 498
Score = 26.6 bits (57), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 17/65 (26%), Positives = 30/65 (46%), Gaps = 2/65 (3%)
Query: 10 DMFQVFQSGNSRADEIVLSNMAVAFDRVLLD--IEEPFTFSSYHKSMREPFDYYMFGQNY 67
D + +S N E +L + F+R LLD +++P+ + + + + E G Y
Sbjct: 278 DYYTPLESRNQSFKEFMLEWIVAQFERQLLDLGLDKPWYWDQFMQDLDETHHGMHLGVWY 337
Query: 68 IRPLV 72
RP V
Sbjct: 338 WRPTV 342
>pdb|2INC|A Chain A, Native TolueneO-Xylene Monooxygenase Hydroxylase X-Ray
Crystal Structure
pdb|2IND|A Chain A, Mn(Ii) Reconstituted TolueneO-Xylene Monooxygenase
Hydroxylase X-Ray Crystal Structure
Length = 491
Score = 26.6 bits (57), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 17/65 (26%), Positives = 30/65 (46%), Gaps = 2/65 (3%)
Query: 10 DMFQVFQSGNSRADEIVLSNMAVAFDRVLLD--IEEPFTFSSYHKSMREPFDYYMFGQNY 67
D + +S N E +L + F+R LLD +++P+ + + + + E G Y
Sbjct: 277 DYYTPLESRNQSFKEFMLEWIVAQFERQLLDLGLDKPWYWDQFMQDLDETHHGMHLGVWY 336
Query: 68 IRPLV 72
RP V
Sbjct: 337 WRPTV 341
>pdb|3RNF|A Chain A, Structure Of The TolueneO-Xylene Monooxygenase Hydroxylase
T201sV271A DOUBLE MUTANT
Length = 498
Score = 26.6 bits (57), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 17/65 (26%), Positives = 30/65 (46%), Gaps = 2/65 (3%)
Query: 10 DMFQVFQSGNSRADEIVLSNMAVAFDRVLLD--IEEPFTFSSYHKSMREPFDYYMFGQNY 67
D + +S N E +L + F+R LLD +++P+ + + + + E G Y
Sbjct: 278 DYYTPLESRNQSFKEFMLEWIVAQFERQLLDLGLDKPWYWDQFMQDLDETHHGMHLGVWY 337
Query: 68 IRPLV 72
RP V
Sbjct: 338 WRPTV 342
>pdb|3RN9|A Chain A, Structure Of The TolueneO-Xylene Monooxygenase Hydroxylase
T201sL272E DOUBLE MUTANT
Length = 498
Score = 26.6 bits (57), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 17/65 (26%), Positives = 30/65 (46%), Gaps = 2/65 (3%)
Query: 10 DMFQVFQSGNSRADEIVLSNMAVAFDRVLLD--IEEPFTFSSYHKSMREPFDYYMFGQNY 67
D + +S N E +L + F+R LLD +++P+ + + + + E G Y
Sbjct: 278 DYYTPLESRNQSFKEFMLEWIVAQFERQLLDLGLDKPWYWDQFMQDLDETHHGMHLGVWY 337
Query: 68 IRPLV 72
RP V
Sbjct: 338 WRPTV 342
>pdb|3RNC|A Chain A, Structure Of The TolueneO-Xylene Monooxygenase Hydroxylase
T201sI100A DOUBLE MUTANT
Length = 498
Score = 26.6 bits (57), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 17/65 (26%), Positives = 30/65 (46%), Gaps = 2/65 (3%)
Query: 10 DMFQVFQSGNSRADEIVLSNMAVAFDRVLLD--IEEPFTFSSYHKSMREPFDYYMFGQNY 67
D + +S N E +L + F+R LLD +++P+ + + + + E G Y
Sbjct: 278 DYYTPLESRNQSFKEFMLEWIVAQFERQLLDLGLDKPWYWDQFMQDLDETHHGMHLGVWY 337
Query: 68 IRPLV 72
RP V
Sbjct: 338 WRPTV 342
>pdb|3N1Z|A Chain A, X-Ray Crystal Structure Of TolueneO-Xylene Monooxygenase
Hydroxylase T201s Mutant
Length = 498
Score = 26.6 bits (57), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 17/65 (26%), Positives = 30/65 (46%), Gaps = 2/65 (3%)
Query: 10 DMFQVFQSGNSRADEIVLSNMAVAFDRVLLD--IEEPFTFSSYHKSMREPFDYYMFGQNY 67
D + +S N E +L + F+R LLD +++P+ + + + + E G Y
Sbjct: 278 DYYTPLESRNQSFKEFMLEWIVAQFERQLLDLGLDKPWYWDQFMQDLDETHHGMHLGVWY 337
Query: 68 IRPLV 72
RP V
Sbjct: 338 WRPTV 342
>pdb|3N20|A Chain A, X-Ray Crystal Structure Of TolueneO-Xylene Monooxygenase
Hydroxylase T201v Mutant
Length = 498
Score = 26.6 bits (57), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 17/65 (26%), Positives = 30/65 (46%), Gaps = 2/65 (3%)
Query: 10 DMFQVFQSGNSRADEIVLSNMAVAFDRVLLD--IEEPFTFSSYHKSMREPFDYYMFGQNY 67
D + +S N E +L + F+R LLD +++P+ + + + + E G Y
Sbjct: 278 DYYTPLESRNQSFKEFMLEWIVAQFERQLLDLGLDKPWYWDQFMQDLDETHHGMHLGVWY 337
Query: 68 IRPLV 72
RP V
Sbjct: 338 WRPTV 342
>pdb|3RNE|A Chain A, Structure Of The TolueneO-Xylene Monooxygenase Hydroxylase
T201sI276E DOUBLE MUTANT
Length = 498
Score = 26.2 bits (56), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 17/65 (26%), Positives = 30/65 (46%), Gaps = 2/65 (3%)
Query: 10 DMFQVFQSGNSRADEIVLSNMAVAFDRVLLD--IEEPFTFSSYHKSMREPFDYYMFGQNY 67
D + +S N E +L + F+R LLD +++P+ + + + + E G Y
Sbjct: 278 DYYTPLESRNQSFKEFMLEWIVAQFERQLLDLGLDKPWYWDQFMQDLDETHHGMHLGVWY 337
Query: 68 IRPLV 72
RP V
Sbjct: 338 WRPTV 342
>pdb|3N1Y|A Chain A, X-Ray Crystal Structure Of TolueneO-Xylene Monooxygenase
Hydroxylase T201g Mutant
Length = 498
Score = 26.2 bits (56), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 17/65 (26%), Positives = 30/65 (46%), Gaps = 2/65 (3%)
Query: 10 DMFQVFQSGNSRADEIVLSNMAVAFDRVLLD--IEEPFTFSSYHKSMREPFDYYMFGQNY 67
D + +S N E +L + F+R LLD +++P+ + + + + E G Y
Sbjct: 278 DYYTPLESRNQSFKEFMLEWIVAQFERQLLDLGLDKPWYWDQFMQDLDETHHGMHLGVWY 337
Query: 68 IRPLV 72
RP V
Sbjct: 338 WRPTV 342
>pdb|3RNG|A Chain A, Structure Of The TolueneO-Xylene Monooxygenase Hydroxylase
T201sW167E DOUBLE MUTANT
Length = 498
Score = 26.2 bits (56), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 21/85 (24%), Positives = 37/85 (43%), Gaps = 6/85 (7%)
Query: 10 DMFQVFQSGNSRADEIVLSNMAVAFDRVLLD--IEEPFTFSSYHKSMREPFDYYMFGQNY 67
D + +S N E +L + F+R LLD +++P+ + + + + E G Y
Sbjct: 278 DYYTPLESRNQSFKEFMLEWIVAQFERQLLDLGLDKPWYWDQFMQDLDETHHGMHLGVWY 337
Query: 68 IRPLVDFRLANDFYAILIHQESSWF 92
RP V + D A + +E W
Sbjct: 338 WRPTVWW----DPAAGVSPEEREWL 358
>pdb|2DVT|A Chain A, Crystal Structure Of 2,6-Dihydroxybenzoate Decarboxylase
From Rhizobium
pdb|2DVT|B Chain B, Crystal Structure Of 2,6-Dihydroxybenzoate Decarboxylase
From Rhizobium
pdb|2DVT|C Chain C, Crystal Structure Of 2,6-Dihydroxybenzoate Decarboxylase
From Rhizobium
pdb|2DVT|D Chain D, Crystal Structure Of 2,6-Dihydroxybenzoate Decarboxylase
From Rhizobium
pdb|2DVU|A Chain A, Crystal Structure Of 2,6-Dihydroxybenzoate Decarboxylase
Complexed With 2,6-Dihydroxybenzoate
pdb|2DVU|B Chain B, Crystal Structure Of 2,6-Dihydroxybenzoate Decarboxylase
Complexed With 2,6-Dihydroxybenzoate
pdb|2DVU|C Chain C, Crystal Structure Of 2,6-Dihydroxybenzoate Decarboxylase
Complexed With 2,6-Dihydroxybenzoate
pdb|2DVU|D Chain D, Crystal Structure Of 2,6-Dihydroxybenzoate Decarboxylase
Complexed With 2,6-Dihydroxybenzoate
pdb|2DVX|A Chain A, Crystal Structure Of 2,6-Dihydroxybenzoate Decarboxylase
Complexed With Inhibitor 2,3-Dihydroxybenzaldehyde
pdb|2DVX|B Chain B, Crystal Structure Of 2,6-Dihydroxybenzoate Decarboxylase
Complexed With Inhibitor 2,3-Dihydroxybenzaldehyde
pdb|2DVX|C Chain C, Crystal Structure Of 2,6-Dihydroxybenzoate Decarboxylase
Complexed With Inhibitor 2,3-Dihydroxybenzaldehyde
pdb|2DVX|D Chain D, Crystal Structure Of 2,6-Dihydroxybenzoate Decarboxylase
Complexed With Inhibitor 2,3-Dihydroxybenzaldehyde
Length = 327
Score = 25.8 bits (55), Expect = 6.8, Method: Composition-based stats.
Identities = 10/34 (29%), Positives = 18/34 (52%)
Query: 12 FQVFQSGNSRADEIVLSNMAVAFDRVLLDIEEPF 45
F + SGN R ++ + + + DR+L + PF
Sbjct: 257 FHITTSGNFRTQTLIDAILEIGADRILFSTDWPF 290
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.328 0.140 0.428
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,856,428
Number of Sequences: 62578
Number of extensions: 100188
Number of successful extensions: 314
Number of sequences better than 100.0: 18
Number of HSP's better than 100.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 15
Number of HSP's that attempted gapping in prelim test: 311
Number of HSP's gapped (non-prelim): 18
length of query: 95
length of database: 14,973,337
effective HSP length: 62
effective length of query: 33
effective length of database: 11,093,501
effective search space: 366085533
effective search space used: 366085533
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 45 (21.9 bits)