Query 035573
Match_columns 95
No_of_seqs 42 out of 44
Neff 2.7
Searched_HMMs 29240
Date Mon Mar 25 06:23:33 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/035573.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/035573hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1iuq_A Glycerol-3-phosphate ac 99.9 5.1E-27 1.8E-31 189.5 5.4 71 11-81 45-115 (367)
2 2dkw_A Hypothetical protein KI 79.0 1.5 5.3E-05 29.7 3.0 47 20-66 3-56 (131)
3 2izx_A CAMP-dependent protein 59.5 2.9 9.8E-05 23.1 0.7 18 56-73 22-39 (41)
4 2kyg_A CAMP-dependent protein 51.2 5.1 0.00017 23.3 0.9 18 56-73 30-47 (50)
5 2izy_A CAMP-dependent protein 49.8 5.3 0.00018 23.9 0.8 19 55-73 24-42 (54)
6 3dai_A ATPase family AAA domai 46.3 15 0.00053 24.2 2.8 23 43-65 36-58 (130)
7 3k2j_A Protein polybromo-1; PB 42.2 26 0.0009 23.3 3.5 48 18-65 10-71 (130)
8 2fkn_A Urocanate hydratase; ro 31.5 19 0.00063 31.1 1.6 28 57-84 335-362 (552)
9 2dat_A Possible global transcr 30.7 47 0.0016 21.6 3.2 40 26-65 14-67 (123)
10 3nxb_A CAT eye syndrome critic 30.3 43 0.0015 21.4 2.9 39 28-66 19-65 (116)
11 3tlp_A Protein polybromo-1; PB 28.3 24 0.00083 23.7 1.5 37 29-65 28-79 (150)
12 3mb4_A Protein polybromo-1; PB 26.9 34 0.0011 22.3 2.0 21 46-66 50-70 (124)
13 3rcw_A Bromodomain-containing 26.2 13 0.00045 24.6 -0.1 21 46-66 42-62 (135)
14 3ljw_A Protein polybromo-1; al 24.8 50 0.0017 21.3 2.5 23 44-66 41-63 (120)
15 3q2e_A Bromodomain and WD repe 24.3 17 0.00057 23.8 0.1 27 39-65 32-58 (123)
16 3d7c_A General control of amin 23.4 80 0.0027 20.0 3.3 28 38-65 28-55 (112)
17 3k32_A Uncharacterized protein 22.6 16 0.00055 25.2 -0.3 17 64-80 131-147 (203)
18 2grc_A Probable global transcr 21.7 39 0.0013 22.3 1.5 19 47-65 48-66 (129)
No 1
>1iuq_A Glycerol-3-phosphate acyltransferase; open twisted alpha/beta, four helix bundle; 1.55A {Cucurbita moschata} SCOP: c.112.1.1 PDB: 1k30_A
Probab=99.93 E-value=5.1e-27 Score=189.53 Aligned_cols=71 Identities=65% Similarity=1.041 Sum_probs=68.5
Q ss_pred hhhhhhcCCcchhHHHHHhHHHHHHHHHhccCCCcccCcccccccCCchhhHhhhhhhhhccccCcchhee
Q 035573 11 MFQVFQSGNSRADEIVLSNMAVAFDRVLLDIEEPFTFSSYHKSMREPFDYYMFGQNYIRPLVDFRLANDFY 81 (95)
Q Consensus 11 ~~AV~~Sg~p~A~e~vl~nM~~~lDrvlldvedPF~F~pyHkaiRePfDYY~FGq~YIrpLVDf~nS~~~y 81 (95)
-+||++||+|+|+|+|+++|.+++|||++|+++||+|+|||||||+|||||+||++|+|||+|+.+|+|.-
T Consensus 45 ~~a~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~p~~f~~~h~~~~~p~d~y~~~~~~ir~li~~~~s~V~G 115 (367)
T 1iuq_A 45 RNAVIESGNPKADEIVLSNMTVALDRILLDVEDPFVFSSHHKAIREPFDYYIFGQNYIRPLIDFGNSFVGN 115 (367)
T ss_dssp HHHHHHTTCTTHHHHHHHHHHHHHHHHHHHHHSCCCCCSEECCCCSSSCHHHHHHHHHGGGBCGGGCEEEC
T ss_pred HHHHHhcCCCChHHHHHHHHHHHHHHHhhcccCCccCCchhhhhcCchhHHHHHHHHHHHHHhhcCCEeec
Confidence 37999999999999999999999999999999999999999999999999999999999999999999644
No 2
>2dkw_A Hypothetical protein KIAA1240; bromodomain-like, five-helix, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=78.96 E-value=1.5 Score=29.69 Aligned_cols=47 Identities=19% Similarity=0.298 Sum_probs=30.0
Q ss_pred cchhHHHHHhHHHHHHHHHhccC-----CCcc--cCcccccccCCchhhHhhhh
Q 035573 20 SRADEIVLSNMAVAFDRVLLDIE-----EPFT--FSSYHKSMREPFDYYMFGQN 66 (95)
Q Consensus 20 p~A~e~vl~nM~~~lDrvlldve-----dPF~--F~pyHkaiRePfDYY~FGq~ 66 (95)
++.++..+..+..++..|+..+. .||. .|-|++-|..|.|+=+....
T Consensus 3 ~~~e~~~~~~L~~~~~~il~~l~~~~~~~~F~~P~pdY~~iIk~PmDL~tI~~k 56 (131)
T 2dkw_A 3 SGSSGNTLRELRLFLRDVTKRLATDKRFNIFSKPVSDYLEVIKEPMDLSTVITK 56 (131)
T ss_dssp SSCTTHHHHHHHHHHHHHHHHHHHSGGGCTTSSCCSSCTTSCSSCCCHHHHHHH
T ss_pred chhhHHHHHHHHHHHHHHHHHHHhCccchhhcCcCccHHhHcCCCcCHHHHHHH
Confidence 34444555555555555554432 4554 79999999999998766543
No 3
>2izx_A CAMP-dependent protein kinase type II-alpha regulatory subunit; CAMP-binding, phosphorylation, nucleotide-binding, PKA, CAMP, anchor, kinase, acetylation; 1.3A {Homo sapiens} PDB: 2hwn_A
Probab=59.50 E-value=2.9 Score=23.10 Aligned_cols=18 Identities=28% Similarity=0.490 Sum_probs=15.7
Q ss_pred CCchhhHhhhhhhhhccc
Q 035573 56 EPFDYYMFGQNYIRPLVD 73 (95)
Q Consensus 56 ePfDYY~FGq~YIrpLVD 73 (95)
.|=|.++|+.+|+..|.+
T Consensus 22 qP~di~~f~a~yF~~l~~ 39 (41)
T 2izx_A 22 QPPDLVEFAVEYFTRLRE 39 (41)
T ss_dssp CCSCHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHhh
Confidence 678999999999998764
No 4
>2kyg_A CAMP-dependent protein kinase type II-alpha regul subunit; protein/protein, homodimer bound to monomer, protein binding; NMR {Homo sapiens}
Probab=51.21 E-value=5.1 Score=23.31 Aligned_cols=18 Identities=28% Similarity=0.490 Sum_probs=15.9
Q ss_pred CCchhhHhhhhhhhhccc
Q 035573 56 EPFDYYMFGQNYIRPLVD 73 (95)
Q Consensus 56 ePfDYY~FGq~YIrpLVD 73 (95)
.|=|.++|+.+|+..|.+
T Consensus 30 qP~Di~~Faa~yF~~l~~ 47 (50)
T 2kyg_A 30 QPPDLVEFAVEYFTRLRE 47 (50)
T ss_dssp CCSCHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHH
Confidence 678999999999998865
No 5
>2izy_A CAMP-dependent protein kinase regulatory subunit II; D/D, RII, PKA, acetylation, transferase, CAMP- binding, phosphorylation, nucleotide-binding; 2.2A {Mus musculus} SCOP: a.31.1.1 PDB: 1l6e_A 1r2a_A 2drn_A 2h9r_A
Probab=49.77 E-value=5.3 Score=23.87 Aligned_cols=19 Identities=26% Similarity=0.473 Sum_probs=16.6
Q ss_pred cCCchhhHhhhhhhhhccc
Q 035573 55 REPFDYYMFGQNYIRPLVD 73 (95)
Q Consensus 55 RePfDYY~FGq~YIrpLVD 73 (95)
+.|=|.++|+.+|+..|..
T Consensus 24 ~qP~Di~~Faa~YF~~L~~ 42 (54)
T 2izy_A 24 QQPPDLVDFAVEYFTRLRE 42 (54)
T ss_dssp HCCSCHHHHHHHHHHHHHH
T ss_pred HCCCCHHHHHHHHHHHHHH
Confidence 3688999999999998876
No 6
>3dai_A ATPase family AAA domain-containing protein 2; ancca, AAA+ nuclear coregulator cancer-associated Pro2000 protein, two AAA DOMA containing protein; 1.95A {Homo sapiens} PDB: 3lxj_A
Probab=46.31 E-value=15 Score=24.22 Aligned_cols=23 Identities=17% Similarity=0.362 Sum_probs=18.0
Q ss_pred CCcccCcccccccCCchhhHhhh
Q 035573 43 EPFTFSSYHKSMREPFDYYMFGQ 65 (95)
Q Consensus 43 dPF~F~pyHkaiRePfDYY~FGq 65 (95)
+|=..|-|++-|..|.|+=+...
T Consensus 36 ~~~~~pdY~~iI~~PmdL~tI~~ 58 (130)
T 3dai_A 36 DPDEVPDYVTVIKQPMDLSSVIS 58 (130)
T ss_dssp CTTTCTTHHHHCSSCCCHHHHHH
T ss_pred ChhhcCCHHHHcCCCCCHHHHHH
Confidence 44567889999999999876654
No 7
>3k2j_A Protein polybromo-1; PB1, polybromo 1 isoform 1, BAF180, polybromo01D, PBRM1, BRG associated factor 180, structural genomics consortium, SGC; 2.20A {Homo sapiens}
Probab=42.22 E-value=26 Score=23.33 Aligned_cols=48 Identities=19% Similarity=0.252 Sum_probs=32.3
Q ss_pred CCcchhHHHHHhHHHHHHHHHhcc-------CCCccc-------CcccccccCCchhhHhhh
Q 035573 18 GNSRADEIVLSNMAVAFDRVLLDI-------EEPFTF-------SSYHKSMREPFDYYMFGQ 65 (95)
Q Consensus 18 g~p~A~e~vl~nM~~~lDrvlldv-------edPF~F-------~pyHkaiRePfDYY~FGq 65 (95)
|.....+.+.+.+..+++.|..-. -.||.- |-|++-|..|.|+=+.-.
T Consensus 10 ~~~~~~~kl~~~~~~l~~~l~~~~d~~g~~~s~~F~~pv~~~~~PdY~~iIk~PMdL~tI~~ 71 (130)
T 3k2j_A 10 GVDLGTENLYFQSMQLYDTVRSCRNNQGQLIAEPFYHLPSKKKYPDYYQQIKMPISLQQIRT 71 (130)
T ss_dssp CCSCHHHHHHHHHHHHHHHHHTCBCSSSCBTTGGGSSCCCTTTCHHHHHHCSSCCCHHHHHH
T ss_pred CCccchHHHHHHHHHHHHHHHHHhcccCCCccHhhcCCCChhhCccHHHHcCCCCCHHHHHH
Confidence 444455666667777888776532 246654 458999999999876654
No 8
>2fkn_A Urocanate hydratase; rossman fold, lyase; HET: NAD; 2.20A {Bacillus subtilis}
Probab=31.47 E-value=19 Score=31.05 Aligned_cols=28 Identities=36% Similarity=0.397 Sum_probs=20.1
Q ss_pred CchhhHhhhhhhhhccccCcchheeeee
Q 035573 57 PFDYYMFGQNYIRPLVDFRLANDFYAIL 84 (95)
Q Consensus 57 PfDYY~FGq~YIrpLVDf~nS~~~y~~~ 84 (95)
.|+|=-|-++|||||.+...--.|++-|
T Consensus 335 aF~~P~fV~~~irPlF~~G~GPFRWval 362 (552)
T 2fkn_A 335 AFDFPGFVPAYIRPLFCEGKGPFRWAAL 362 (552)
T ss_dssp GGGSCBHHHHTTHHHHTTTCCCEEEEET
T ss_pred cCCCCccHHHHhhhHhhcCCCCceeEEc
Confidence 3555558899999998777666666554
No 9
>2dat_A Possible global transcription activator SNF2L2; bromodomain, all alpha protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=30.68 E-value=47 Score=21.60 Aligned_cols=40 Identities=23% Similarity=0.443 Sum_probs=25.2
Q ss_pred HHHhHHHHHHHHHhc-------cCCCcc-------cCcccccccCCchhhHhhh
Q 035573 26 VLSNMAVAFDRVLLD-------IEEPFT-------FSSYHKSMREPFDYYMFGQ 65 (95)
Q Consensus 26 vl~nM~~~lDrvlld-------vedPF~-------F~pyHkaiRePfDYY~FGq 65 (95)
+.+.+..+++.+..- +-.||. .|-|++-|..|.|+=+.-+
T Consensus 14 l~~~~~~il~~l~~~~d~~g~~~s~~F~~pv~~~~~pdY~~iIk~PmdL~tI~~ 67 (123)
T 2dat_A 14 LTKQMNAIIDTVINYKDSSGRQLSEVFIQLPSRKELPEYYELIRKPVDFKKIKE 67 (123)
T ss_dssp HHHHHHHHHHHHHHCBCSSSCBSGGGGTSCCCTTTSCHHHHHCSSCCCHHHHHH
T ss_pred HHHHHHHHHHHHHhhhcccCCeeeHHhcCCCCcccCCCHHHHcCCCCCHHHHHH
Confidence 334455567666543 123554 5669999999999765543
No 10
>3nxb_A CAT eye syndrome critical region protein 2; structural genomics consortium, SGC, CECR2, CAT eye syndrome chromosome region candidate 2, bromodomain; 1.83A {Homo sapiens} SCOP: a.29.2.0
Probab=30.32 E-value=43 Score=21.37 Aligned_cols=39 Identities=15% Similarity=0.213 Sum_probs=24.7
Q ss_pred HhHHHHHHHHHh--------ccCCCcccCcccccccCCchhhHhhhh
Q 035573 28 SNMAVAFDRVLL--------DIEEPFTFSSYHKSMREPFDYYMFGQN 66 (95)
Q Consensus 28 ~nM~~~lDrvll--------dvedPF~F~pyHkaiRePfDYY~FGq~ 66 (95)
+.|..+++.+.. ...+|=..|-|++-|..|.|+=+....
T Consensus 19 ~~~~~il~~l~~~~~s~~F~~pv~~~~~pdY~~~I~~Pmdl~tI~~k 65 (116)
T 3nxb_A 19 TAMYKVLDVVKAHKDSWPFLEPVDESYAPNYYQIIKAPMDISSMEKK 65 (116)
T ss_dssp HHHHHHHHHHHHSTTCGGGSSCCCTTTSTTHHHHCSSCCCHHHHHHH
T ss_pred HHHHHHHHHHHhCCCcHhhcCcCChhhccChHHHcCCCCCHHHHHHH
Confidence 344446655533 223333567899999999998776554
No 11
>3tlp_A Protein polybromo-1; PB1, polybromo 1 isoform 1, BAF180, polybromo-1D, PBRM1, BRG associated factor 180, structural genomics consortium, SGC; 2.13A {Homo sapiens}
Probab=28.34 E-value=24 Score=23.65 Aligned_cols=37 Identities=30% Similarity=0.530 Sum_probs=25.9
Q ss_pred hHHHHHHHHHhccC--------CCc-------ccCcccccccCCchhhHhhh
Q 035573 29 NMAVAFDRVLLDIE--------EPF-------TFSSYHKSMREPFDYYMFGQ 65 (95)
Q Consensus 29 nM~~~lDrvlldve--------dPF-------~F~pyHkaiRePfDYY~FGq 65 (95)
.|..+++.++.-.+ .|| ..|-|++-|..|.|+=+.-.
T Consensus 28 ~~k~ll~~l~~~~~~~~~~~~~~~F~~~~~~~~~pdY~~iIk~PmdL~tI~~ 79 (150)
T 3tlp_A 28 RMKILFNVVLEAREPGSGRRLCDLFMVKPSKKDYPDYYKIILEPMDLKIIEH 79 (150)
T ss_dssp HHHHHHHHHHHCBCTTTCCBGGGGGSSCCCTTTCHHHHHHCSSCCCHHHHHH
T ss_pred HHHHHHHHHHHHHhcccCCcccHHhcCCCchhhCcCHHHHhCCCCCHHHHHH
Confidence 55567777765432 466 56779999999999866544
No 12
>3mb4_A Protein polybromo-1; PB1, polybromo 1 isoform 1, BAF180, polybromo-1D, PBRM1, BRG associated factor 180, structural genomics consortium, SGC; 1.66A {Homo sapiens} PDB: 3g0j_A 2yqd_A
Probab=26.87 E-value=34 Score=22.30 Aligned_cols=21 Identities=14% Similarity=0.401 Sum_probs=16.1
Q ss_pred ccCcccccccCCchhhHhhhh
Q 035573 46 TFSSYHKSMREPFDYYMFGQN 66 (95)
Q Consensus 46 ~F~pyHkaiRePfDYY~FGq~ 66 (95)
..|-|++-|..|.|+=+....
T Consensus 50 ~~pdY~~iI~~PmdL~tI~~k 70 (124)
T 3mb4_A 50 ELPDYYLTIKKPMDMEKIRSH 70 (124)
T ss_dssp TCHHHHHHCSSCCCHHHHHHH
T ss_pred ccCCHHHHcCCCCCHHHHHHH
Confidence 355699999999998776543
No 13
>3rcw_A Bromodomain-containing protein 1; transcription, structural genomics, structural consortium, SGC; 2.21A {Homo sapiens}
Probab=26.25 E-value=13 Score=24.57 Aligned_cols=21 Identities=14% Similarity=0.498 Sum_probs=16.3
Q ss_pred ccCcccccccCCchhhHhhhh
Q 035573 46 TFSSYHKSMREPFDYYMFGQN 66 (95)
Q Consensus 46 ~F~pyHkaiRePfDYY~FGq~ 66 (95)
..|-|++-|..|.|+=+...+
T Consensus 42 ~~pdY~~iI~~PmdL~tI~~k 62 (135)
T 3rcw_A 42 EVPDYLDHIKHPMDFATMRKR 62 (135)
T ss_dssp TCTTHHHHCSSCCCHHHHHHH
T ss_pred hcCCHHHHhCCCCCHHHHHHH
Confidence 466799999999998766543
No 14
>3ljw_A Protein polybromo-1; alpha helix, alternative splicing, bromodomain, chromatin RE DNA-binding, nucleus, phosphoprotein, transcription; 1.50A {Homo sapiens} PDB: 2ktb_B* 3hmf_A
Probab=24.78 E-value=50 Score=21.33 Aligned_cols=23 Identities=22% Similarity=0.476 Sum_probs=17.3
Q ss_pred CcccCcccccccCCchhhHhhhh
Q 035573 44 PFTFSSYHKSMREPFDYYMFGQN 66 (95)
Q Consensus 44 PF~F~pyHkaiRePfDYY~FGq~ 66 (95)
+-..|-|++-|..|.|+=+....
T Consensus 41 ~~~~pdY~~iIk~PmdL~tI~~k 63 (120)
T 3ljw_A 41 KVQYPDYYAIIKEPIDLKTIAQR 63 (120)
T ss_dssp TTTCHHHHHHCSSCCCHHHHHHH
T ss_pred cccCCChHHHcCCCCCHHHHHHH
Confidence 33567799999999998776543
No 15
>3q2e_A Bromodomain and WD repeat-containing protein 1; structural genomics consortium, SGC, cell cycle progression, signal transduction, apoptosis; 1.74A {Homo sapiens}
Probab=24.29 E-value=17 Score=23.77 Aligned_cols=27 Identities=11% Similarity=0.310 Sum_probs=19.9
Q ss_pred hccCCCcccCcccccccCCchhhHhhh
Q 035573 39 LDIEEPFTFSSYHKSMREPFDYYMFGQ 65 (95)
Q Consensus 39 ldvedPF~F~pyHkaiRePfDYY~FGq 65 (95)
....+|=..|-|++-|..|.|+=+...
T Consensus 32 ~~pv~~~~~pdY~~~I~~PmdL~tI~~ 58 (123)
T 3q2e_A 32 RQPVDLVEYPDYRDIIDTPMDFGTVRE 58 (123)
T ss_dssp SSCCCTTTCTTHHHHCSSCCCHHHHHH
T ss_pred cCCCChhhcCCHHHHcCCCCCHHHHHH
Confidence 344455567889999999999876644
No 16
>3d7c_A General control of amino acid synthesis protein 5; GCN5, bromodomain, structural genomics consortium, SGC, HOST-virus interaction, nucleus; 2.06A {Homo sapiens} SCOP: a.29.2.1 PDB: 1f68_A 1jm4_B* 1n72_A 1wug_A* 1wum_A* 1zs5_A* 2rnw_A* 2rnx_A* 3gg3_A
Probab=23.43 E-value=80 Score=20.01 Aligned_cols=28 Identities=14% Similarity=0.254 Sum_probs=19.8
Q ss_pred HhccCCCcccCcccccccCCchhhHhhh
Q 035573 38 LLDIEEPFTFSSYHKSMREPFDYYMFGQ 65 (95)
Q Consensus 38 lldvedPF~F~pyHkaiRePfDYY~FGq 65 (95)
+....+|=..|-|++-|..|.|+=+...
T Consensus 28 F~~pvd~~~~pdY~~iIk~PmdL~tI~~ 55 (112)
T 3d7c_A 28 FMEPVKKSEAPDYYEVIRFPIDLKTMTE 55 (112)
T ss_dssp GSSCCCTTTSTTHHHHCSSCCCHHHHHH
T ss_pred hcCCCCcccccCHHHHccCCcCHHHHHH
Confidence 3344445567889999999999866544
No 17
>3k32_A Uncharacterized protein MJ0690; predicted subunit of tRNA methyltransferase, methanocaldococcus jannaschii DSM , PSI- 2; 2.50A {Methanocaldococcus jannaschii}
Probab=22.58 E-value=16 Score=25.24 Aligned_cols=17 Identities=29% Similarity=0.452 Sum_probs=14.6
Q ss_pred hhhhhhhccccCcchhe
Q 035573 64 GQNYIRPLVDFRLANDF 80 (95)
Q Consensus 64 Gq~YIrpLVDf~nS~~~ 80 (95)
|..++|||+.+.++.++
T Consensus 131 ~~~iirPLl~~~k~eI~ 147 (203)
T 3k32_A 131 NIQYITPLMGFGYKTLR 147 (203)
T ss_dssp TCEEECGGGGCCHHHHH
T ss_pred CCeEEeccCCCCHHHHH
Confidence 67899999999988764
No 18
>2grc_A Probable global transcription activator SNF2L4; bromodomain, BRG1, chromatin remodelling, acely-lysine binding, protein-protein interactions; 1.50A {Homo sapiens} PDB: 3uvd_A 2h60_A
Probab=21.75 E-value=39 Score=22.25 Aligned_cols=19 Identities=21% Similarity=0.550 Sum_probs=14.1
Q ss_pred cCcccccccCCchhhHhhh
Q 035573 47 FSSYHKSMREPFDYYMFGQ 65 (95)
Q Consensus 47 F~pyHkaiRePfDYY~FGq 65 (95)
.|-|++-|..|.|+=+.-+
T Consensus 48 ~pdY~~iIk~PmdL~tI~~ 66 (129)
T 2grc_A 48 LPEYYELIRKPVDFKKIKE 66 (129)
T ss_dssp CHHHHHHCSSCCCHHHHHH
T ss_pred CCCHHHHcCCCCCHHHHHH
Confidence 4558889999999765543
Done!