BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 035574
         (156 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|3OC3|A Chain A, Crystal Structure Of The Mot1 N-Terminal Domain In Complex
           With Tbp
 pdb|3OC3|B Chain B, Crystal Structure Of The Mot1 N-Terminal Domain In Complex
           With Tbp
          Length = 800

 Score = 32.0 bits (71), Expect = 0.14,   Method: Compositional matrix adjust.
 Identities = 16/38 (42%), Positives = 26/38 (68%), Gaps = 1/38 (2%)

Query: 81  DNQNGSRVLITLT-QIKMVTSFQLEDRENIRLDLVPTG 117
           D +NG+R+L +L  Q K+VT F++E +E+  + L  TG
Sbjct: 78  DRRNGARILRSLMFQFKLVTDFKIEYKESSSIYLSSTG 115


>pdb|2XKL|A Chain A, Crystal Structure Of Mouse Apolipoprotein M
          Length = 171

 Score = 28.5 bits (62), Expect = 1.7,   Method: Compositional matrix adjust.
 Identities = 22/69 (31%), Positives = 31/69 (44%), Gaps = 4/69 (5%)

Query: 92  LTQIKMVTSFQLEDRENIRLDL----VPTGGPLRATYQGWPFLILYHGSISLEENIEEVF 147
           LT+ K     + E R +++ DL     P G  L+ T QG+   +LY+ S    E   E F
Sbjct: 85  LTEGKGNMELRTEGRPDMKTDLFSSSCPGGIMLKETGQGYQRFLLYNRSPHPPEKCVEEF 144

Query: 148 NIPTGNLTF 156
              T  L F
Sbjct: 145 QSLTSCLDF 153


>pdb|4EQ4|A Chain A, Crystal Structure Of Seleno-Methionine Derivatized Gh3.12
 pdb|4EQ4|B Chain B, Crystal Structure Of Seleno-Methionine Derivatized Gh3.12
          Length = 581

 Score = 27.3 bits (59), Expect = 3.6,   Method: Composition-based stats.
 Identities = 13/29 (44%), Positives = 18/29 (62%)

Query: 20  ILDSIGLDKTAFTAEAYNSSYMKHYFDYL 48
           +L+S GLD   FT+ A  S++  HY  YL
Sbjct: 450 VLESSGLDLKDFTSYADTSTFPGHYVVYL 478


>pdb|4EWV|A Chain A, Crystal Structure Of Gh3.12 In Complex With Ampcpp
 pdb|4EWV|B Chain B, Crystal Structure Of Gh3.12 In Complex With Ampcpp
 pdb|4EPM|A Chain A, Crystal Structure Of Arabidopsis Gh3.12 (Pbs3) In Complex
           With Amp
 pdb|4EQL|A Chain A, Crystal Structure Of Gh3.12 In Complex With Amp And
           Salicylate
 pdb|4EQL|B Chain B, Crystal Structure Of Gh3.12 In Complex With Amp And
           Salicylate
          Length = 581

 Score = 27.3 bits (59), Expect = 4.0,   Method: Composition-based stats.
 Identities = 13/29 (44%), Positives = 18/29 (62%)

Query: 20  ILDSIGLDKTAFTAEAYNSSYMKHYFDYL 48
           +L+S GLD   FT+ A  S++  HY  YL
Sbjct: 450 VLESSGLDLKDFTSYADTSTFPGHYVVYL 478


>pdb|3P3K|A Chain A, The Crystal Structure Of Translationally Controlled Tumor
           Protein (Tctp) Of Plasmodium Falciparum
          Length = 183

 Score = 26.9 bits (58), Expect = 4.4,   Method: Compositional matrix adjust.
 Identities = 15/39 (38%), Positives = 23/39 (58%), Gaps = 1/39 (2%)

Query: 11  GPTQLSVVAILDSIGLDKTAFTAEAYNSSYMKHYFDYLA 49
           G     V+ I+DS  L  TAF+ + Y S+Y+K+Y   +A
Sbjct: 66  GADVEHVIDIVDSFQLTSTAFSKKEY-SAYIKNYMQKVA 103


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.322    0.141    0.419 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,866,574
Number of Sequences: 62578
Number of extensions: 192494
Number of successful extensions: 337
Number of sequences better than 100.0: 6
Number of HSP's better than 100.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 335
Number of HSP's gapped (non-prelim): 6
length of query: 156
length of database: 14,973,337
effective HSP length: 91
effective length of query: 65
effective length of database: 9,278,739
effective search space: 603118035
effective search space used: 603118035
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 47 (22.7 bits)