Query 035574
Match_columns 156
No_of_seqs 169 out of 1701
Neff 7.9
Searched_HMMs 29240
Date Mon Mar 25 06:25:10 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/035574.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/035574hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2a5y_B CED-4; apoptosis; HET: 99.9 3.3E-23 1.1E-27 177.1 10.7 137 2-140 138-342 (549)
2 3sfz_A APAF-1, apoptotic pepti 99.8 2.6E-18 9E-23 155.7 10.8 135 2-138 134-331 (1249)
3 1vt4_I APAF-1 related killer D 99.7 1.6E-18 5.6E-23 156.9 4.2 130 3-138 139-337 (1221)
4 1z6t_A APAF-1, apoptotic prote 99.6 6.3E-16 2.2E-20 132.1 9.7 130 4-137 136-330 (591)
5 1w5s_A Origin recognition comp 97.7 5.6E-05 1.9E-09 60.9 6.2 56 15-70 50-111 (412)
6 2qby_B CDC6 homolog 3, cell di 97.6 6.9E-05 2.4E-09 59.9 5.6 56 13-70 43-107 (384)
7 2chg_A Replication factor C sm 97.6 0.0004 1.4E-08 50.4 8.9 49 17-66 40-89 (226)
8 2v1u_A Cell division control p 97.6 0.0001 3.5E-09 58.6 5.9 55 13-69 42-102 (387)
9 2fna_A Conserved hypothetical 97.5 0.00021 7.1E-09 56.1 7.4 61 1-68 18-83 (357)
10 1fnn_A CDC6P, cell division co 97.5 0.00042 1.4E-08 55.2 8.6 54 15-70 44-98 (389)
11 2qby_A CDC6 homolog 1, cell di 97.4 6.1E-05 2.1E-09 59.8 2.6 40 13-54 43-85 (386)
12 2qen_A Walker-type ATPase; unk 97.3 0.00011 3.9E-09 57.5 2.5 32 16-54 32-63 (350)
13 2w58_A DNAI, primosome compone 97.1 0.00068 2.3E-08 49.6 5.4 36 16-53 55-90 (202)
14 3c8u_A Fructokinase; YP_612366 97.0 0.00059 2E-08 50.5 4.0 26 12-37 19-44 (208)
15 1jbk_A CLPB protein; beta barr 96.9 0.00093 3.2E-08 47.3 4.6 24 15-38 43-66 (195)
16 3te6_A Regulatory protein SIR3 96.9 0.0024 8.3E-08 51.0 7.2 59 12-71 42-106 (318)
17 3lw7_A Adenylate kinase relate 96.9 0.00059 2E-08 47.9 3.1 20 16-35 2-21 (179)
18 3kb2_A SPBC2 prophage-derived 96.8 0.0007 2.4E-08 47.8 3.0 22 16-37 2-23 (173)
19 1njg_A DNA polymerase III subu 96.8 0.001 3.5E-08 48.7 3.9 23 16-38 46-68 (250)
20 1qhx_A CPT, protein (chloramph 96.8 0.00078 2.7E-08 48.1 2.9 22 16-37 4-25 (178)
21 3bos_A Putative DNA replicatio 96.7 0.002 6.8E-08 47.6 5.0 24 14-37 51-74 (242)
22 1rz3_A Hypothetical protein rb 96.7 0.0022 7.6E-08 47.2 5.2 35 3-37 9-44 (201)
23 2p65_A Hypothetical protein PF 96.7 0.0015 5E-08 46.3 4.1 23 15-37 43-65 (187)
24 1ly1_A Polynucleotide kinase; 96.7 0.0011 3.7E-08 47.1 3.3 22 16-37 3-24 (181)
25 1zp6_A Hypothetical protein AT 96.7 0.0013 4.5E-08 47.4 3.8 25 14-38 8-32 (191)
26 1odf_A YGR205W, hypothetical 3 96.7 0.0022 7.5E-08 50.5 5.1 26 12-37 28-53 (290)
27 1nks_A Adenylate kinase; therm 96.6 0.0012 4.2E-08 47.3 3.3 22 16-37 2-23 (194)
28 3vaa_A Shikimate kinase, SK; s 96.6 0.0011 3.8E-08 48.6 3.1 24 14-37 24-47 (199)
29 3ec2_A DNA replication protein 96.6 0.0011 3.6E-08 47.8 2.6 24 15-38 38-61 (180)
30 1kag_A SKI, shikimate kinase I 96.5 0.0012 4.1E-08 46.9 2.4 22 16-37 5-26 (173)
31 2rhm_A Putative kinase; P-loop 96.5 0.002 6.7E-08 46.4 3.6 23 15-37 5-27 (193)
32 2cvh_A DNA repair and recombin 96.5 0.0076 2.6E-07 44.1 6.8 46 13-63 18-63 (220)
33 1knq_A Gluconate kinase; ALFA/ 96.4 0.0027 9.1E-08 45.2 4.0 24 14-37 7-30 (175)
34 3trf_A Shikimate kinase, SK; a 96.4 0.0015 5.2E-08 46.9 2.7 23 15-37 5-27 (185)
35 1kht_A Adenylate kinase; phosp 96.4 0.0018 6.2E-08 46.4 3.1 22 16-37 4-25 (192)
36 2jaq_A Deoxyguanosine kinase; 96.4 0.0018 6.2E-08 46.9 3.1 21 17-37 2-22 (205)
37 1kgd_A CASK, peripheral plasma 96.4 0.0018 6.3E-08 46.8 3.0 23 15-37 5-27 (180)
38 3uie_A Adenylyl-sulfate kinase 96.4 0.0024 8.3E-08 46.8 3.6 24 14-37 24-47 (200)
39 1uf9_A TT1252 protein; P-loop, 96.4 0.0025 8.5E-08 46.2 3.6 25 13-37 6-30 (203)
40 1ukz_A Uridylate kinase; trans 96.4 0.0027 9.1E-08 46.3 3.8 25 13-37 13-37 (203)
41 3t61_A Gluconokinase; PSI-biol 96.4 0.0015 5.1E-08 47.8 2.3 23 15-37 18-40 (202)
42 1zuh_A Shikimate kinase; alpha 96.4 0.002 6.9E-08 45.7 3.0 25 13-37 5-29 (168)
43 2if2_A Dephospho-COA kinase; a 96.3 0.0022 7.4E-08 46.9 3.0 22 16-37 2-23 (204)
44 1tev_A UMP-CMP kinase; ploop, 96.3 0.0026 8.9E-08 45.6 3.3 23 15-37 3-25 (196)
45 2c95_A Adenylate kinase 1; tra 96.3 0.0025 8.6E-08 45.9 3.2 23 15-37 9-31 (196)
46 2bdt_A BH3686; alpha-beta prot 96.3 0.0028 9.6E-08 45.8 3.5 22 16-37 3-24 (189)
47 4eun_A Thermoresistant glucoki 96.3 0.0023 7.7E-08 46.9 3.0 23 15-37 29-51 (200)
48 2qt1_A Nicotinamide riboside k 96.3 0.003 1E-07 46.4 3.5 25 13-37 19-43 (207)
49 4gp7_A Metallophosphoesterase; 96.3 0.0029 9.9E-08 45.4 3.4 23 15-37 9-31 (171)
50 3tr0_A Guanylate kinase, GMP k 96.3 0.0027 9.3E-08 46.1 3.2 23 15-37 7-29 (205)
51 2j41_A Guanylate kinase; GMP, 96.2 0.0029 9.8E-08 46.0 3.3 23 15-37 6-28 (207)
52 3iij_A Coilin-interacting nucl 96.2 0.0022 7.4E-08 46.0 2.6 23 15-37 11-33 (180)
53 3asz_A Uridine kinase; cytidin 96.2 0.0031 1.1E-07 46.3 3.5 24 14-37 5-28 (211)
54 3a4m_A L-seryl-tRNA(SEC) kinas 96.2 0.0029 1E-07 48.5 3.5 23 15-37 4-26 (260)
55 1via_A Shikimate kinase; struc 96.2 0.002 6.9E-08 46.0 2.4 22 16-37 5-26 (175)
56 2yvu_A Probable adenylyl-sulfa 96.2 0.003 1E-07 45.6 3.3 24 14-37 12-35 (186)
57 2plr_A DTMP kinase, probable t 96.2 0.003 1E-07 46.0 3.3 22 16-37 5-26 (213)
58 1n0w_A DNA repair protein RAD5 96.2 0.016 5.4E-07 43.0 7.4 50 13-62 22-75 (243)
59 2ze6_A Isopentenyl transferase 96.2 0.003 1E-07 48.4 3.4 22 16-37 2-23 (253)
60 3fwy_A Light-independent proto 96.2 0.003 1E-07 50.2 3.5 23 13-35 46-68 (314)
61 1qf9_A UMP/CMP kinase, protein 96.2 0.0033 1.1E-07 45.0 3.3 23 15-37 6-28 (194)
62 3cm0_A Adenylate kinase; ATP-b 96.2 0.0034 1.2E-07 45.0 3.3 22 16-37 5-26 (186)
63 2qor_A Guanylate kinase; phosp 96.2 0.0026 8.8E-08 46.8 2.7 24 14-37 11-34 (204)
64 3p32_A Probable GTPase RV1496/ 96.1 0.0059 2E-07 49.0 5.0 33 5-37 69-101 (355)
65 1cke_A CK, MSSA, protein (cyti 96.1 0.0031 1.1E-07 46.7 3.1 22 16-37 6-27 (227)
66 1e6c_A Shikimate kinase; phosp 96.1 0.0025 8.4E-08 45.1 2.4 22 16-37 3-24 (173)
67 1jjv_A Dephospho-COA kinase; P 96.1 0.0037 1.3E-07 45.7 3.5 22 16-37 3-24 (206)
68 3n70_A Transport activator; si 96.1 0.0026 9E-08 44.4 2.5 22 17-38 26-47 (145)
69 2bwj_A Adenylate kinase 5; pho 96.1 0.0033 1.1E-07 45.4 3.1 23 15-37 12-34 (199)
70 1y63_A LMAJ004144AAA protein; 96.1 0.0037 1.3E-07 45.2 3.3 24 14-37 9-32 (184)
71 2pbr_A DTMP kinase, thymidylat 96.1 0.0034 1.2E-07 45.0 3.1 21 17-37 2-22 (195)
72 2qz4_A Paraplegin; AAA+, SPG7, 96.1 0.006 2.1E-07 45.9 4.6 23 15-37 39-61 (262)
73 1sxj_B Activator 1 37 kDa subu 96.1 0.0088 3E-07 46.2 5.6 20 18-37 45-64 (323)
74 2pt5_A Shikimate kinase, SK; a 96.1 0.0037 1.3E-07 44.1 3.1 21 17-37 2-22 (168)
75 1l8q_A Chromosomal replication 96.1 0.0047 1.6E-07 48.4 3.9 24 14-37 36-59 (324)
76 3a00_A Guanylate kinase, GMP k 96.0 0.003 1E-07 45.8 2.5 22 16-37 2-23 (186)
77 2bbw_A Adenylate kinase 4, AK4 96.0 0.0039 1.3E-07 47.2 3.2 23 15-37 27-49 (246)
78 3tau_A Guanylate kinase, GMP k 96.0 0.0041 1.4E-07 46.0 3.3 23 15-37 8-30 (208)
79 4a74_A DNA repair and recombin 96.0 0.018 6.2E-07 42.2 6.8 48 13-60 23-74 (231)
80 2vli_A Antibiotic resistance p 96.0 0.0024 8.1E-08 45.6 1.9 23 15-37 5-27 (183)
81 2cdn_A Adenylate kinase; phosp 96.0 0.0039 1.3E-07 45.5 3.1 23 15-37 20-42 (201)
82 2iyv_A Shikimate kinase, SK; t 96.0 0.0038 1.3E-07 44.8 2.9 21 17-37 4-24 (184)
83 1aky_A Adenylate kinase; ATP:A 96.0 0.0042 1.4E-07 46.0 3.1 23 15-37 4-26 (220)
84 1gtv_A TMK, thymidylate kinase 96.0 0.0022 7.5E-08 47.0 1.5 21 17-37 2-22 (214)
85 3bh0_A DNAB-like replicative h 96.0 0.027 9.1E-07 44.4 7.9 53 13-69 66-118 (315)
86 1nn5_A Similar to deoxythymidy 96.0 0.0046 1.6E-07 45.2 3.3 23 15-37 9-31 (215)
87 3uk6_A RUVB-like 2; hexameric 95.9 0.0082 2.8E-07 47.6 4.8 33 6-38 61-93 (368)
88 2wwf_A Thymidilate kinase, put 95.9 0.0046 1.6E-07 45.2 3.1 23 15-37 10-32 (212)
89 1zd8_A GTP:AMP phosphotransfer 95.9 0.0045 1.5E-07 46.2 3.0 23 15-37 7-29 (227)
90 1xjc_A MOBB protein homolog; s 95.9 0.0047 1.6E-07 45.0 3.0 24 14-37 3-26 (169)
91 3tlx_A Adenylate kinase 2; str 95.9 0.0071 2.4E-07 45.9 4.1 25 13-37 27-51 (243)
92 2kjq_A DNAA-related protein; s 95.9 0.0037 1.3E-07 44.2 2.3 25 14-38 35-59 (149)
93 2pez_A Bifunctional 3'-phospho 95.9 0.006 2E-07 43.6 3.5 23 15-37 5-27 (179)
94 1ye8_A Protein THEP1, hypothet 95.9 0.0053 1.8E-07 44.7 3.2 22 17-38 2-23 (178)
95 1uj2_A Uridine-cytidine kinase 95.9 0.0056 1.9E-07 46.5 3.5 25 13-37 20-44 (252)
96 1lvg_A Guanylate kinase, GMP k 95.9 0.0039 1.3E-07 45.9 2.5 22 16-37 5-26 (198)
97 3t15_A Ribulose bisphosphate c 95.9 0.0048 1.7E-07 48.2 3.2 26 13-38 34-59 (293)
98 2z0h_A DTMP kinase, thymidylat 95.9 0.0052 1.8E-07 44.2 3.1 21 17-37 2-22 (197)
99 2hf9_A Probable hydrogenase ni 95.8 0.0064 2.2E-07 44.8 3.6 26 13-38 36-61 (226)
100 3aez_A Pantothenate kinase; tr 95.8 0.0065 2.2E-07 48.2 3.8 26 12-37 87-112 (312)
101 1ex7_A Guanylate kinase; subst 95.8 0.004 1.4E-07 46.0 2.3 22 16-37 2-23 (186)
102 1znw_A Guanylate kinase, GMP k 95.8 0.0055 1.9E-07 45.1 3.1 23 15-37 20-42 (207)
103 1gvn_B Zeta; postsegregational 95.8 0.0097 3.3E-07 46.5 4.7 25 13-37 31-55 (287)
104 2v54_A DTMP kinase, thymidylat 95.8 0.0058 2E-07 44.3 3.1 22 16-37 5-26 (204)
105 1m7g_A Adenylylsulfate kinase; 95.8 0.0071 2.4E-07 44.6 3.6 23 15-37 25-47 (211)
106 2jeo_A Uridine-cytidine kinase 95.8 0.0071 2.4E-07 45.8 3.7 24 14-37 24-47 (245)
107 2f6r_A COA synthase, bifunctio 95.8 0.0072 2.5E-07 47.0 3.7 24 13-36 73-96 (281)
108 1zu4_A FTSY; GTPase, signal re 95.8 0.01 3.6E-07 47.2 4.7 24 14-37 104-127 (320)
109 4e22_A Cytidylate kinase; P-lo 95.8 0.006 2E-07 46.6 3.2 22 15-36 27-48 (252)
110 2p5t_B PEZT; postsegregational 95.7 0.009 3.1E-07 45.5 4.1 25 13-37 30-54 (253)
111 1vht_A Dephospho-COA kinase; s 95.7 0.0079 2.7E-07 44.4 3.6 23 15-37 4-26 (218)
112 1zak_A Adenylate kinase; ATP:A 95.7 0.0054 1.8E-07 45.5 2.7 23 15-37 5-27 (222)
113 3e70_C DPA, signal recognition 95.7 0.011 3.7E-07 47.4 4.5 24 14-37 128-151 (328)
114 1v5w_A DMC1, meiotic recombina 95.7 0.056 1.9E-06 43.1 8.7 52 13-64 120-175 (343)
115 1iqp_A RFCS; clamp loader, ext 95.7 0.011 3.7E-07 45.8 4.4 22 17-38 48-69 (327)
116 3fb4_A Adenylate kinase; psych 95.7 0.0069 2.4E-07 44.5 3.1 21 17-37 2-22 (216)
117 2grj_A Dephospho-COA kinase; T 95.6 0.0077 2.6E-07 44.4 3.3 25 13-37 10-34 (192)
118 2wsm_A Hydrogenase expression/ 95.6 0.0081 2.8E-07 44.1 3.5 26 13-38 28-53 (221)
119 1d2n_A N-ethylmaleimide-sensit 95.6 0.014 4.7E-07 44.6 4.9 27 12-38 61-87 (272)
120 2z43_A DNA repair and recombin 95.6 0.035 1.2E-06 43.8 7.4 56 14-70 106-165 (324)
121 2ehv_A Hypothetical protein PH 95.6 0.0069 2.3E-07 45.2 3.1 23 14-36 29-51 (251)
122 1rj9_A FTSY, signal recognitio 95.6 0.0081 2.8E-07 47.5 3.6 24 14-37 101-124 (304)
123 3ake_A Cytidylate kinase; CMP 95.6 0.0073 2.5E-07 43.9 3.1 21 17-37 4-24 (208)
124 2z4s_A Chromosomal replication 95.6 0.0062 2.1E-07 50.4 3.0 23 15-37 130-152 (440)
125 1in4_A RUVB, holliday junction 95.6 0.0059 2E-07 48.5 2.7 24 15-38 51-74 (334)
126 2i1q_A DNA repair and recombin 95.6 0.042 1.4E-06 43.1 7.6 53 13-65 96-162 (322)
127 1z6g_A Guanylate kinase; struc 95.6 0.0059 2E-07 45.6 2.5 23 15-37 23-45 (218)
128 3end_A Light-independent proto 95.6 0.0087 3E-07 46.6 3.6 25 13-37 39-63 (307)
129 3dl0_A Adenylate kinase; phosp 95.6 0.0077 2.6E-07 44.3 3.1 21 17-37 2-22 (216)
130 1fzq_A ADP-ribosylation factor 95.6 0.012 4.1E-07 42.0 4.0 33 6-38 7-39 (181)
131 3pfi_A Holliday junction ATP-d 95.6 0.0099 3.4E-07 46.7 3.9 25 13-37 53-77 (338)
132 2ga8_A Hypothetical 39.9 kDa p 95.5 0.015 5.2E-07 47.2 4.9 26 12-37 21-46 (359)
133 3h4m_A Proteasome-activating n 95.5 0.0075 2.5E-07 46.2 2.9 24 14-37 50-73 (285)
134 1ixz_A ATP-dependent metallopr 95.5 0.0074 2.5E-07 45.6 2.9 21 18-38 52-72 (254)
135 1sxj_D Activator 1 41 kDa subu 95.5 0.013 4.4E-07 46.0 4.3 21 18-38 61-81 (353)
136 1cr0_A DNA primase/helicase; R 95.5 0.048 1.7E-06 42.1 7.5 53 13-69 33-86 (296)
137 1yrb_A ATP(GTP)binding protein 95.5 0.012 4.3E-07 44.3 4.0 24 14-37 13-36 (262)
138 3be4_A Adenylate kinase; malar 95.5 0.0074 2.5E-07 44.7 2.7 22 16-37 6-27 (217)
139 2f1r_A Molybdopterin-guanine d 95.5 0.006 2.1E-07 44.3 2.1 23 15-37 2-24 (171)
140 2afh_E Nitrogenase iron protei 95.5 0.01 3.5E-07 45.8 3.6 23 15-37 2-24 (289)
141 1htw_A HI0065; nucleotide-bind 95.5 0.011 3.7E-07 42.3 3.5 25 13-37 31-55 (158)
142 2wji_A Ferrous iron transport 95.4 0.013 4.6E-07 41.0 3.9 23 16-38 4-26 (165)
143 1lv7_A FTSH; alpha/beta domain 95.4 0.008 2.7E-07 45.5 2.9 23 16-38 46-68 (257)
144 1cp2_A CP2, nitrogenase iron p 95.4 0.01 3.5E-07 45.1 3.5 22 16-37 2-23 (269)
145 3ney_A 55 kDa erythrocyte memb 95.4 0.0086 3E-07 44.6 3.0 24 14-37 18-41 (197)
146 1ltq_A Polynucleotide kinase; 95.4 0.0095 3.3E-07 46.1 3.3 22 16-37 3-24 (301)
147 2xxa_A Signal recognition part 95.4 0.017 5.7E-07 48.0 4.9 24 14-37 99-122 (433)
148 1sq5_A Pantothenate kinase; P- 95.4 0.011 3.7E-07 46.6 3.6 25 13-37 78-102 (308)
149 1e4v_A Adenylate kinase; trans 95.4 0.0087 3E-07 44.1 2.8 21 17-37 2-22 (214)
150 3b9q_A Chloroplast SRP recepto 95.4 0.012 4E-07 46.5 3.7 24 14-37 99-122 (302)
151 3co5_A Putative two-component 95.4 0.0026 9E-08 44.3 -0.0 22 17-38 29-50 (143)
152 3nwj_A ATSK2; P loop, shikimat 95.4 0.0073 2.5E-07 46.5 2.4 23 15-37 48-70 (250)
153 2dyk_A GTP-binding protein; GT 95.4 0.013 4.4E-07 40.3 3.5 23 16-38 2-24 (161)
154 1s96_A Guanylate kinase, GMP k 95.4 0.01 3.4E-07 44.7 3.1 24 14-37 15-38 (219)
155 2px0_A Flagellar biosynthesis 95.3 0.01 3.5E-07 46.7 3.3 24 14-37 104-127 (296)
156 3syl_A Protein CBBX; photosynt 95.3 0.01 3.4E-07 45.9 3.2 25 13-37 65-89 (309)
157 3cf0_A Transitional endoplasmi 95.3 0.0092 3.1E-07 46.6 3.0 24 14-37 48-71 (301)
158 3tqc_A Pantothenate kinase; bi 95.3 0.014 4.8E-07 46.6 4.1 26 12-37 89-114 (321)
159 1ak2_A Adenylate kinase isoenz 95.3 0.011 3.8E-07 44.3 3.3 23 15-37 16-38 (233)
160 2xb4_A Adenylate kinase; ATP-b 95.3 0.011 3.6E-07 44.2 3.1 21 17-37 2-22 (223)
161 2i3b_A HCR-ntpase, human cance 95.3 0.0092 3.1E-07 43.9 2.7 21 17-37 3-23 (189)
162 2qgz_A Helicase loader, putati 95.3 0.023 7.8E-07 44.8 5.1 24 15-38 152-175 (308)
163 3lnc_A Guanylate kinase, GMP k 95.3 0.0066 2.3E-07 45.3 1.9 21 16-36 28-48 (231)
164 2x8a_A Nuclear valosin-contain 95.3 0.0096 3.3E-07 46.1 2.9 20 18-37 47-66 (274)
165 3b9p_A CG5977-PA, isoform A; A 95.3 0.01 3.5E-07 45.7 3.0 23 15-37 54-76 (297)
166 1oix_A RAS-related protein RAB 95.2 0.012 3.9E-07 42.6 3.1 24 15-38 29-52 (191)
167 2zej_A Dardarin, leucine-rich 95.2 0.011 3.7E-07 42.3 2.8 22 17-38 4-25 (184)
168 2onk_A Molybdate/tungstate ABC 95.2 0.012 4.1E-07 44.9 3.2 22 16-37 25-46 (240)
169 2bjv_A PSP operon transcriptio 95.2 0.018 6.3E-07 43.7 4.3 23 16-38 30-52 (265)
170 1np6_A Molybdopterin-guanine d 95.2 0.012 4.1E-07 42.8 3.0 23 15-37 6-28 (174)
171 1pzn_A RAD51, DNA repair and r 95.2 0.039 1.3E-06 44.3 6.3 49 13-61 129-181 (349)
172 1iy2_A ATP-dependent metallopr 95.2 0.011 3.6E-07 45.5 2.9 21 18-38 76-96 (278)
173 2w0m_A SSO2452; RECA, SSPF, un 95.2 0.012 4.2E-07 43.1 3.1 24 14-37 22-45 (235)
174 3umf_A Adenylate kinase; rossm 95.2 0.015 5.3E-07 43.8 3.6 25 13-37 27-51 (217)
175 2ce2_X GTPase HRAS; signaling 95.2 0.015 5.3E-07 39.7 3.4 22 17-38 5-26 (166)
176 2pcj_A ABC transporter, lipopr 95.1 0.012 4.2E-07 44.2 3.0 23 15-37 30-52 (224)
177 3eie_A Vacuolar protein sortin 95.1 0.012 4.3E-07 46.2 3.2 23 15-37 51-73 (322)
178 2lkc_A Translation initiation 95.1 0.023 7.8E-07 39.7 4.3 25 14-38 7-31 (178)
179 3tif_A Uncharacterized ABC tra 95.1 0.013 4.3E-07 44.5 3.1 23 15-37 31-53 (235)
180 1vma_A Cell division protein F 95.1 0.016 5.4E-07 45.9 3.7 24 14-37 103-126 (306)
181 2zr9_A Protein RECA, recombina 95.1 0.025 8.5E-07 45.5 4.9 45 13-59 59-103 (349)
182 1q3t_A Cytidylate kinase; nucl 95.1 0.014 4.9E-07 43.7 3.3 25 13-37 14-38 (236)
183 1hqc_A RUVB; extended AAA-ATPa 95.1 0.0078 2.7E-07 46.8 1.9 23 15-37 38-60 (324)
184 2f9l_A RAB11B, member RAS onco 95.1 0.013 4.3E-07 42.4 2.9 24 15-38 5-28 (199)
185 2wjg_A FEOB, ferrous iron tran 95.1 0.015 5.2E-07 41.2 3.3 24 15-38 7-30 (188)
186 2nzj_A GTP-binding protein REM 95.1 0.015 5E-07 40.6 3.1 23 16-38 5-27 (175)
187 3pvs_A Replication-associated 95.0 0.017 5.7E-07 48.1 3.8 23 15-37 50-72 (447)
188 4eaq_A DTMP kinase, thymidylat 95.0 0.039 1.3E-06 41.5 5.6 25 14-38 25-49 (229)
189 2vp4_A Deoxynucleoside kinase; 95.0 0.013 4.3E-07 44.0 2.8 25 13-37 18-42 (230)
190 4fcw_A Chaperone protein CLPB; 95.0 0.015 5.2E-07 44.9 3.4 23 15-37 47-69 (311)
191 3zvl_A Bifunctional polynucleo 95.0 0.015 5.2E-07 47.7 3.5 24 14-37 257-280 (416)
192 2ocp_A DGK, deoxyguanosine kin 95.0 0.017 5.7E-07 43.4 3.5 23 15-37 2-24 (241)
193 1z08_A RAS-related protein RAB 95.0 0.02 6.7E-07 39.7 3.6 23 16-38 7-29 (170)
194 2p67_A LAO/AO transport system 95.0 0.028 9.6E-07 44.8 4.9 26 12-37 53-78 (341)
195 2og2_A Putative signal recogni 95.0 0.018 6E-07 46.7 3.7 24 14-37 156-179 (359)
196 2cbz_A Multidrug resistance-as 95.0 0.015 5E-07 44.2 3.1 23 15-37 31-53 (237)
197 1u8z_A RAS-related protein RAL 95.0 0.019 6.4E-07 39.5 3.4 24 16-39 5-28 (168)
198 3con_A GTPase NRAS; structural 95.0 0.015 5.2E-07 41.3 3.0 24 16-39 22-45 (190)
199 1b0u_A Histidine permease; ABC 95.0 0.014 4.9E-07 45.0 3.0 23 15-37 32-54 (262)
200 1mv5_A LMRA, multidrug resista 95.0 0.016 5.6E-07 44.0 3.3 23 15-37 28-50 (243)
201 1c1y_A RAS-related protein RAP 95.0 0.019 6.5E-07 39.5 3.4 22 17-38 5-26 (167)
202 2qm8_A GTPase/ATPase; G protei 94.9 0.03 1E-06 44.7 5.0 26 12-37 52-77 (337)
203 1g6h_A High-affinity branched- 94.9 0.015 5.2E-07 44.6 3.1 23 15-37 33-55 (257)
204 1ji0_A ABC transporter; ATP bi 94.9 0.015 5.3E-07 44.1 3.1 23 15-37 32-54 (240)
205 3kl4_A SRP54, signal recogniti 94.9 0.024 8.4E-07 47.1 4.5 24 14-37 96-119 (433)
206 4a1f_A DNAB helicase, replicat 94.9 0.081 2.8E-06 42.5 7.4 54 13-70 44-97 (338)
207 2d2e_A SUFC protein; ABC-ATPas 94.9 0.017 5.7E-07 44.2 3.2 23 15-37 29-51 (250)
208 3d3q_A TRNA delta(2)-isopenten 94.9 0.017 5.7E-07 46.6 3.3 22 16-37 8-29 (340)
209 2chq_A Replication factor C sm 94.9 0.026 9E-07 43.4 4.4 21 17-37 40-60 (319)
210 2erx_A GTP-binding protein DI- 94.9 0.023 8E-07 39.2 3.7 22 17-38 5-26 (172)
211 3d8b_A Fidgetin-like protein 1 94.9 0.013 4.4E-07 47.0 2.6 23 15-37 117-139 (357)
212 1z2a_A RAS-related protein RAB 94.9 0.022 7.7E-07 39.2 3.6 24 15-38 5-28 (168)
213 1svm_A Large T antigen; AAA+ f 94.9 0.027 9.3E-07 45.9 4.6 26 12-37 166-191 (377)
214 2pze_A Cystic fibrosis transme 94.9 0.016 5.3E-07 43.8 2.9 23 15-37 34-56 (229)
215 2dr3_A UPF0273 protein PH0284; 94.9 0.026 8.8E-07 41.8 4.1 49 14-66 22-70 (247)
216 3hr8_A Protein RECA; alpha and 94.9 0.046 1.6E-06 44.2 5.9 45 13-59 59-103 (356)
217 1u94_A RECA protein, recombina 94.8 0.03 1E-06 45.2 4.7 44 14-59 62-105 (356)
218 3gfo_A Cobalt import ATP-bindi 94.8 0.016 5.6E-07 45.1 3.0 23 15-37 34-56 (275)
219 2c9o_A RUVB-like 1; hexameric 94.8 0.031 1E-06 46.3 4.9 34 5-38 53-86 (456)
220 1jr3_A DNA polymerase III subu 94.8 0.022 7.5E-07 45.0 3.8 23 16-38 39-61 (373)
221 1nlf_A Regulatory protein REPA 94.8 0.016 5.5E-07 44.5 3.0 23 15-37 30-52 (279)
222 1z0j_A RAB-22, RAS-related pro 94.8 0.018 6.3E-07 39.8 3.0 24 16-39 7-30 (170)
223 3q72_A GTP-binding protein RAD 94.8 0.017 5.7E-07 40.0 2.8 21 17-37 4-24 (166)
224 1ek0_A Protein (GTP-binding pr 94.8 0.019 6.4E-07 39.6 3.0 23 17-39 5-27 (170)
225 1ls1_A Signal recognition part 94.8 0.021 7.2E-07 44.8 3.6 24 14-37 97-120 (295)
226 2zu0_C Probable ATP-dependent 94.8 0.018 6.2E-07 44.5 3.2 24 15-38 46-69 (267)
227 3r20_A Cytidylate kinase; stru 94.8 0.018 6.1E-07 44.0 3.1 23 15-37 9-31 (233)
228 4g1u_C Hemin import ATP-bindin 94.8 0.017 5.9E-07 44.7 3.1 23 15-37 37-59 (266)
229 3hws_A ATP-dependent CLP prote 94.8 0.019 6.5E-07 45.8 3.4 23 15-37 51-73 (363)
230 1h65_A Chloroplast outer envel 94.8 0.039 1.3E-06 42.2 5.1 32 8-39 32-63 (270)
231 2ff7_A Alpha-hemolysin translo 94.8 0.018 6.1E-07 44.0 3.1 22 16-37 36-57 (247)
232 1kao_A RAP2A; GTP-binding prot 94.8 0.023 7.7E-07 39.0 3.4 22 17-38 5-26 (167)
233 2olj_A Amino acid ABC transpor 94.8 0.018 6E-07 44.6 3.0 23 15-37 50-72 (263)
234 3q85_A GTP-binding protein REM 94.8 0.019 6.6E-07 39.7 3.0 21 17-37 4-24 (169)
235 3lda_A DNA repair protein RAD5 94.8 0.093 3.2E-06 43.0 7.5 50 13-62 176-229 (400)
236 3t1o_A Gliding protein MGLA; G 94.8 0.018 6.1E-07 40.9 2.9 23 15-37 14-36 (198)
237 3b85_A Phosphate starvation-in 94.7 0.013 4.4E-07 43.8 2.2 22 16-37 23-44 (208)
238 1sxj_E Activator 1 40 kDa subu 94.7 0.025 8.4E-07 44.5 3.9 20 18-37 39-58 (354)
239 2ged_A SR-beta, signal recogni 94.7 0.019 6.5E-07 40.9 3.0 25 14-38 47-71 (193)
240 1sxj_A Activator 1 95 kDa subu 94.7 0.031 1.1E-06 47.0 4.7 24 15-38 77-100 (516)
241 2ixe_A Antigen peptide transpo 94.7 0.019 6.3E-07 44.6 3.1 23 15-37 45-67 (271)
242 1m7b_A RND3/RHOE small GTP-bin 94.7 0.023 7.8E-07 40.4 3.4 24 15-38 7-30 (184)
243 1vpl_A ABC transporter, ATP-bi 94.7 0.019 6.3E-07 44.3 3.0 23 15-37 41-63 (256)
244 2ghi_A Transport protein; mult 94.7 0.019 6.4E-07 44.3 3.1 23 15-37 46-68 (260)
245 1svi_A GTP-binding protein YSX 94.7 0.026 8.8E-07 40.2 3.7 26 13-38 21-46 (195)
246 2gj8_A MNME, tRNA modification 94.7 0.02 6.8E-07 40.6 3.0 23 16-38 5-27 (172)
247 3t5g_A GTP-binding protein RHE 94.7 0.023 8E-07 39.9 3.4 24 15-38 6-29 (181)
248 1ky3_A GTP-binding protein YPT 94.7 0.02 6.9E-07 40.0 3.0 25 14-38 7-31 (182)
249 3pqc_A Probable GTP-binding pr 94.7 0.028 9.5E-07 39.8 3.8 26 14-39 22-47 (195)
250 3kkq_A RAS-related protein M-R 94.7 0.024 8.2E-07 39.9 3.4 24 15-38 18-41 (183)
251 2yz2_A Putative ABC transporte 94.7 0.019 6.6E-07 44.3 3.1 23 15-37 33-55 (266)
252 2r62_A Cell division protease 94.7 0.01 3.5E-07 45.0 1.5 21 18-38 47-67 (268)
253 4dsu_A GTPase KRAS, isoform 2B 94.7 0.024 8.2E-07 39.9 3.4 23 17-39 6-28 (189)
254 3tw8_B RAS-related protein RAB 94.7 0.028 9.6E-07 39.2 3.7 27 13-39 7-33 (181)
255 1r2q_A RAS-related protein RAB 94.7 0.021 7.3E-07 39.3 3.0 23 16-38 7-29 (170)
256 1sxj_C Activator 1 40 kDa subu 94.6 0.037 1.3E-06 43.6 4.8 20 18-37 49-68 (340)
257 1sgw_A Putative ABC transporte 94.6 0.016 5.5E-07 43.5 2.5 22 16-37 36-57 (214)
258 1p5z_B DCK, deoxycytidine kina 94.6 0.014 4.7E-07 44.5 2.1 25 13-37 22-46 (263)
259 2hxs_A RAB-26, RAS-related pro 94.6 0.023 8E-07 39.7 3.2 23 16-38 7-29 (178)
260 3hjn_A DTMP kinase, thymidylat 94.6 0.056 1.9E-06 39.8 5.4 20 18-37 3-22 (197)
261 1z0f_A RAB14, member RAS oncog 94.6 0.022 7.4E-07 39.7 3.0 26 14-39 14-39 (179)
262 2j37_W Signal recognition part 94.6 0.035 1.2E-06 47.0 4.8 24 14-37 100-123 (504)
263 2yhs_A FTSY, cell division pro 94.6 0.024 8.3E-07 48.0 3.7 24 14-37 292-315 (503)
264 3tkl_A RAS-related protein RAB 94.6 0.037 1.3E-06 39.3 4.3 26 14-39 15-40 (196)
265 2v3c_C SRP54, signal recogniti 94.6 0.015 5.1E-07 48.3 2.4 23 15-37 99-121 (432)
266 4dzz_A Plasmid partitioning pr 94.6 0.022 7.5E-07 41.2 3.1 23 15-37 1-24 (206)
267 3crm_A TRNA delta(2)-isopenten 94.6 0.022 7.6E-07 45.6 3.3 22 16-37 6-27 (323)
268 1j8m_F SRP54, signal recogniti 94.6 0.027 9.3E-07 44.3 3.8 23 15-37 98-120 (297)
269 2cxx_A Probable GTP-binding pr 94.6 0.022 7.6E-07 40.2 3.0 23 17-39 3-25 (190)
270 2qi9_C Vitamin B12 import ATP- 94.6 0.021 7.2E-07 43.8 3.0 22 16-37 27-48 (249)
271 1g16_A RAS-related protein SEC 94.6 0.022 7.7E-07 39.3 3.0 23 16-38 4-26 (170)
272 1xwi_A SKD1 protein; VPS4B, AA 94.6 0.021 7.3E-07 45.1 3.2 23 15-37 45-67 (322)
273 2ihy_A ABC transporter, ATP-bi 94.6 0.021 7.2E-07 44.5 3.0 23 15-37 47-69 (279)
274 2nq2_C Hypothetical ABC transp 94.6 0.021 7.3E-07 43.8 3.0 22 16-37 32-53 (253)
275 1ofh_A ATP-dependent HSL prote 94.5 0.02 6.8E-07 44.0 2.9 22 16-37 51-72 (310)
276 2fn4_A P23, RAS-related protei 94.5 0.038 1.3E-06 38.5 4.1 26 13-38 7-32 (181)
277 2a9k_A RAS-related protein RAL 94.5 0.027 9.4E-07 39.5 3.4 25 15-39 18-42 (187)
278 1wms_A RAB-9, RAB9, RAS-relate 94.5 0.023 7.9E-07 39.6 3.0 24 15-38 7-30 (177)
279 3a8t_A Adenylate isopentenyltr 94.5 0.024 8.1E-07 45.7 3.3 22 16-37 41-62 (339)
280 3sop_A Neuronal-specific septi 94.5 0.023 7.8E-07 44.1 3.1 21 17-37 4-24 (270)
281 1mh1_A RAC1; GTP-binding, GTPa 94.5 0.029 9.8E-07 39.4 3.4 23 16-38 6-28 (186)
282 3c5c_A RAS-like protein 12; GD 94.5 0.024 8.1E-07 40.6 3.0 24 15-38 21-44 (187)
283 2v9p_A Replication protein E1; 94.5 0.04 1.4E-06 43.7 4.5 25 13-37 124-148 (305)
284 4edh_A DTMP kinase, thymidylat 94.5 0.082 2.8E-06 39.4 6.0 23 15-37 6-28 (213)
285 1upt_A ARL1, ADP-ribosylation 94.5 0.025 8.6E-07 39.2 3.0 24 15-38 7-30 (171)
286 4hlc_A DTMP kinase, thymidylat 94.4 0.034 1.2E-06 41.3 3.9 30 16-47 3-32 (205)
287 1nrj_B SR-beta, signal recogni 94.4 0.029 9.9E-07 40.9 3.4 27 13-39 10-36 (218)
288 2bme_A RAB4A, RAS-related prot 94.4 0.025 8.4E-07 39.9 3.0 24 15-38 10-33 (186)
289 1r8s_A ADP-ribosylation factor 94.4 0.024 8.3E-07 39.0 2.9 21 18-38 3-23 (164)
290 2iwr_A Centaurin gamma 1; ANK 94.4 0.02 6.9E-07 40.2 2.5 23 16-38 8-30 (178)
291 3ihw_A Centg3; RAS, centaurin, 94.4 0.025 8.5E-07 40.5 3.0 24 15-38 20-43 (184)
292 2y8e_A RAB-protein 6, GH09086P 94.4 0.026 8.7E-07 39.3 3.0 23 16-38 15-37 (179)
293 2bov_A RAla, RAS-related prote 94.4 0.03 1E-06 40.2 3.4 26 14-39 13-38 (206)
294 2eyu_A Twitching motility prot 94.4 0.029 9.8E-07 43.3 3.4 24 14-37 24-47 (261)
295 1m2o_B GTP-binding protein SAR 94.4 0.025 8.7E-07 40.6 3.0 23 16-38 24-46 (190)
296 2q6t_A DNAB replication FORK h 94.4 0.14 4.7E-06 42.2 7.8 60 8-70 193-252 (444)
297 3bc1_A RAS-related protein RAB 94.4 0.034 1.2E-06 39.2 3.6 24 15-38 11-34 (195)
298 2efe_B Small GTP-binding prote 94.4 0.034 1.2E-06 38.9 3.6 23 16-38 13-35 (181)
299 3bwd_D RAC-like GTP-binding pr 94.3 0.028 9.5E-07 39.4 3.0 23 16-38 9-31 (182)
300 2oil_A CATX-8, RAS-related pro 94.3 0.027 9.3E-07 40.1 3.0 24 15-38 25-48 (193)
301 2g6b_A RAS-related protein RAB 94.3 0.036 1.2E-06 38.7 3.6 25 15-39 10-34 (180)
302 1nij_A Hypothetical protein YJ 94.3 0.024 8.3E-07 44.7 2.9 25 14-38 3-27 (318)
303 1f6b_A SAR1; gtpases, N-termin 94.3 0.021 7.3E-07 41.4 2.4 24 15-38 25-48 (198)
304 2fh5_B SR-beta, signal recogni 94.3 0.032 1.1E-06 40.5 3.4 25 15-39 7-31 (214)
305 3def_A T7I23.11 protein; chlor 94.3 0.061 2.1E-06 41.0 5.1 28 12-39 33-60 (262)
306 1tq4_A IIGP1, interferon-induc 94.3 0.023 8E-07 46.9 2.8 24 14-37 68-91 (413)
307 3clv_A RAB5 protein, putative; 94.3 0.028 9.7E-07 39.8 3.0 24 15-38 7-30 (208)
308 1xp8_A RECA protein, recombina 94.3 0.05 1.7E-06 44.1 4.7 44 14-59 73-116 (366)
309 3kta_A Chromosome segregation 94.3 0.031 1.1E-06 39.8 3.2 22 16-37 27-48 (182)
310 4bas_A ADP-ribosylation factor 94.3 0.034 1.2E-06 39.6 3.4 27 13-39 15-41 (199)
311 2qp9_X Vacuolar protein sortin 94.2 0.021 7E-07 45.8 2.4 23 16-38 85-107 (355)
312 1a7j_A Phosphoribulokinase; tr 94.2 0.013 4.3E-07 46.0 1.1 24 14-37 4-27 (290)
313 1um8_A ATP-dependent CLP prote 94.2 0.024 8.2E-07 45.4 2.8 23 15-37 72-94 (376)
314 3llu_A RAS-related GTP-binding 94.2 0.029 9.8E-07 40.4 3.0 23 15-37 20-42 (196)
315 2vhj_A Ntpase P4, P4; non- hyd 94.2 0.031 1.1E-06 44.9 3.4 50 16-70 124-180 (331)
316 2qu8_A Putative nucleolar GTP- 94.2 0.041 1.4E-06 40.6 3.9 26 13-38 27-52 (228)
317 1zbd_A Rabphilin-3A; G protein 94.2 0.031 1.1E-06 40.2 3.2 25 15-39 8-32 (203)
318 1q57_A DNA primase/helicase; d 94.2 0.16 5.5E-06 42.4 7.9 58 10-70 237-294 (503)
319 1pui_A ENGB, probable GTP-bind 94.2 0.018 6.2E-07 41.7 1.8 25 14-38 25-49 (210)
320 2pjz_A Hypothetical protein ST 94.2 0.029 9.8E-07 43.4 3.0 22 16-37 31-52 (263)
321 2www_A Methylmalonic aciduria 94.2 0.035 1.2E-06 44.5 3.7 25 13-37 72-96 (349)
322 2fg5_A RAB-22B, RAS-related pr 94.2 0.03 1E-06 40.1 3.0 25 15-39 23-47 (192)
323 1moz_A ARL1, ADP-ribosylation 94.2 0.037 1.3E-06 38.8 3.4 26 13-38 16-41 (183)
324 2atv_A RERG, RAS-like estrogen 94.2 0.036 1.2E-06 39.7 3.4 24 15-38 28-51 (196)
325 1vg8_A RAS-related protein RAB 94.2 0.039 1.3E-06 39.6 3.6 26 14-39 7-32 (207)
326 2h92_A Cytidylate kinase; ross 94.1 0.025 8.5E-07 41.6 2.5 22 16-37 4-25 (219)
327 1ksh_A ARF-like protein 2; sma 94.1 0.031 1.1E-06 39.5 3.0 26 14-39 17-42 (186)
328 1zd9_A ADP-ribosylation factor 94.1 0.041 1.4E-06 39.2 3.6 24 15-38 22-45 (188)
329 1lw7_A Transcriptional regulat 94.1 0.032 1.1E-06 44.7 3.3 23 15-37 170-192 (365)
330 3oes_A GTPase rhebl1; small GT 94.1 0.036 1.2E-06 39.9 3.4 25 15-39 24-48 (201)
331 3cbq_A GTP-binding protein REM 94.1 0.024 8.1E-07 41.1 2.4 23 14-36 22-44 (195)
332 2q3h_A RAS homolog gene family 94.1 0.032 1.1E-06 40.0 3.0 24 15-38 20-43 (201)
333 3sr0_A Adenylate kinase; phosp 94.1 0.032 1.1E-06 41.5 3.1 21 17-37 2-22 (206)
334 1x3s_A RAS-related protein RAB 94.1 0.033 1.1E-06 39.5 3.0 23 16-38 16-38 (195)
335 3io5_A Recombination and repai 94.1 0.13 4.3E-06 41.4 6.6 42 17-60 30-73 (333)
336 3nh6_A ATP-binding cassette SU 94.1 0.026 8.9E-07 44.7 2.6 23 15-37 80-102 (306)
337 3reg_A RHO-like small GTPase; 94.0 0.043 1.5E-06 39.2 3.6 24 16-39 24-47 (194)
338 1gwn_A RHO-related GTP-binding 94.0 0.038 1.3E-06 40.4 3.4 24 15-38 28-51 (205)
339 1ojl_A Transcriptional regulat 94.0 0.025 8.6E-07 44.4 2.5 23 16-38 26-48 (304)
340 2gf9_A RAS-related protein RAB 94.0 0.034 1.2E-06 39.5 3.0 25 15-39 22-46 (189)
341 2gf0_A GTP-binding protein DI- 94.0 0.043 1.5E-06 39.0 3.6 24 15-38 8-31 (199)
342 1z06_A RAS-related protein RAB 94.0 0.034 1.2E-06 39.6 3.0 24 15-38 20-43 (189)
343 2a5j_A RAS-related protein RAB 94.0 0.035 1.2E-06 39.6 3.0 24 15-38 21-44 (191)
344 1zj6_A ADP-ribosylation factor 94.0 0.038 1.3E-06 39.3 3.1 25 14-38 15-39 (187)
345 1tue_A Replication protein E1; 93.9 0.047 1.6E-06 41.2 3.7 23 15-37 58-80 (212)
346 3fkq_A NTRC-like two-domain pr 93.9 0.048 1.6E-06 43.9 4.1 26 12-37 140-166 (373)
347 2bbs_A Cystic fibrosis transme 93.9 0.034 1.2E-06 43.6 3.0 23 15-37 64-86 (290)
348 2p5s_A RAS and EF-hand domain 93.9 0.036 1.2E-06 39.9 3.0 25 14-38 27-51 (199)
349 2o52_A RAS-related protein RAB 93.9 0.036 1.2E-06 40.0 3.0 24 15-38 25-48 (200)
350 2x77_A ADP-ribosylation factor 93.9 0.05 1.7E-06 38.6 3.7 26 13-38 20-45 (189)
351 3kjh_A CO dehydrogenase/acetyl 93.9 0.033 1.1E-06 41.3 2.8 20 18-37 3-22 (254)
352 2r6a_A DNAB helicase, replicat 93.9 0.11 3.7E-06 43.0 6.2 52 13-67 201-252 (454)
353 2il1_A RAB12; G-protein, GDP, 93.9 0.033 1.1E-06 39.9 2.7 24 16-39 27-50 (192)
354 2b6h_A ADP-ribosylation factor 93.9 0.034 1.2E-06 40.0 2.8 24 15-38 29-52 (192)
355 3dz8_A RAS-related protein RAB 93.9 0.035 1.2E-06 39.6 2.8 23 16-38 24-46 (191)
356 2axn_A 6-phosphofructo-2-kinas 93.9 0.041 1.4E-06 46.6 3.6 24 14-37 34-57 (520)
357 3exa_A TRNA delta(2)-isopenten 93.9 0.039 1.3E-06 44.1 3.3 23 15-37 3-25 (322)
358 2cjw_A GTP-binding protein GEM 93.9 0.038 1.3E-06 39.9 3.0 23 15-37 6-28 (192)
359 2ew1_A RAS-related protein RAB 93.8 0.048 1.7E-06 39.7 3.6 24 15-38 26-49 (201)
360 4gzl_A RAS-related C3 botulinu 93.8 0.044 1.5E-06 39.8 3.3 24 15-38 30-53 (204)
361 3pxg_A Negative regulator of g 93.8 0.041 1.4E-06 45.8 3.4 21 17-37 203-223 (468)
362 3cph_A RAS-related protein SEC 93.8 0.051 1.8E-06 39.1 3.6 24 15-38 20-43 (213)
363 2j1l_A RHO-related GTP-binding 93.8 0.039 1.3E-06 40.4 3.0 23 16-38 35-57 (214)
364 1ega_A Protein (GTP-binding pr 93.8 0.044 1.5E-06 42.9 3.5 25 14-38 7-31 (301)
365 2bcg_Y Protein YP2, GTP-bindin 93.8 0.039 1.3E-06 39.8 3.0 24 15-38 8-31 (206)
366 3iev_A GTP-binding protein ERA 93.8 0.048 1.6E-06 42.8 3.7 27 12-38 7-33 (308)
367 3lxx_A GTPase IMAP family memb 93.8 0.059 2E-06 40.2 4.0 26 14-39 28-53 (239)
368 3dm5_A SRP54, signal recogniti 93.7 0.045 1.6E-06 45.6 3.6 24 14-37 99-122 (443)
369 2h17_A ADP-ribosylation factor 93.7 0.037 1.3E-06 39.1 2.7 24 15-38 21-44 (181)
370 2qnr_A Septin-2, protein NEDD5 93.7 0.032 1.1E-06 43.8 2.6 20 18-37 21-40 (301)
371 3foz_A TRNA delta(2)-isopenten 93.7 0.043 1.5E-06 43.8 3.3 24 14-37 9-32 (316)
372 2fv8_A H6, RHO-related GTP-bin 93.7 0.041 1.4E-06 39.9 3.0 23 16-38 26-48 (207)
373 2j0v_A RAC-like GTP-binding pr 93.7 0.049 1.7E-06 39.4 3.4 24 15-38 9-32 (212)
374 1u0j_A DNA replication protein 93.7 0.07 2.4E-06 41.6 4.4 34 4-37 93-126 (267)
375 2atx_A Small GTP binding prote 93.7 0.05 1.7E-06 38.7 3.3 23 16-38 19-41 (194)
376 3tui_C Methionine import ATP-b 93.7 0.042 1.4E-06 44.7 3.2 23 15-37 54-76 (366)
377 2gno_A DNA polymerase III, gam 93.6 0.4 1.4E-05 37.6 8.8 54 15-70 18-74 (305)
378 2gco_A H9, RHO-related GTP-bin 93.6 0.044 1.5E-06 39.5 3.0 23 16-38 26-48 (201)
379 2h57_A ADP-ribosylation factor 93.6 0.034 1.2E-06 39.6 2.3 25 15-39 21-45 (190)
380 3cr8_A Sulfate adenylyltranfer 93.6 0.038 1.3E-06 47.2 3.0 23 15-37 369-391 (552)
381 4dhe_A Probable GTP-binding pr 93.6 0.04 1.4E-06 40.2 2.7 27 13-39 27-53 (223)
382 3q3j_B RHO-related GTP-binding 93.6 0.058 2E-06 39.6 3.6 24 16-39 28-51 (214)
383 2hup_A RAS-related protein RAB 93.6 0.045 1.5E-06 39.6 3.0 24 15-38 29-52 (201)
384 2f7s_A C25KG, RAS-related prot 93.5 0.048 1.6E-06 39.6 3.1 24 15-38 25-48 (217)
385 3fdi_A Uncharacterized protein 93.5 0.046 1.6E-06 40.3 3.0 22 16-37 7-28 (201)
386 3bgw_A DNAB-like replicative h 93.5 0.12 4.2E-06 42.7 5.9 56 10-69 192-247 (444)
387 1ypw_A Transitional endoplasmi 93.5 0.053 1.8E-06 48.2 3.9 24 14-37 237-260 (806)
388 3k53_A Ferrous iron transport 93.5 0.057 1.9E-06 41.3 3.6 24 15-38 3-26 (271)
389 1bif_A 6-phosphofructo-2-kinas 93.5 0.05 1.7E-06 45.2 3.5 23 15-37 39-61 (469)
390 3ea0_A ATPase, para family; al 93.5 0.059 2E-06 40.0 3.6 24 14-37 3-27 (245)
391 3m6a_A ATP-dependent protease 93.5 0.036 1.2E-06 47.1 2.7 24 14-37 107-130 (543)
392 3v9p_A DTMP kinase, thymidylat 93.5 0.079 2.7E-06 40.1 4.3 23 15-37 25-47 (227)
393 2ffh_A Protein (FFH); SRP54, s 93.5 0.054 1.9E-06 44.9 3.6 24 14-37 97-120 (425)
394 2r44_A Uncharacterized protein 93.5 0.035 1.2E-06 43.4 2.4 21 17-37 48-68 (331)
395 3fvq_A Fe(3+) IONS import ATP- 93.4 0.048 1.6E-06 44.2 3.2 23 15-37 30-52 (359)
396 4b4t_K 26S protease regulatory 93.4 0.035 1.2E-06 46.0 2.4 24 14-37 205-228 (428)
397 3vfd_A Spastin; ATPase, microt 93.4 0.039 1.4E-06 44.5 2.7 23 15-37 148-170 (389)
398 2fu5_C RAS-related protein RAB 93.4 0.027 9.2E-07 39.7 1.5 24 15-38 8-31 (183)
399 1z47_A CYSA, putative ABC-tran 93.4 0.05 1.7E-06 44.0 3.2 23 15-37 41-63 (355)
400 2zan_A Vacuolar protein sortin 93.4 0.048 1.7E-06 45.0 3.2 24 15-38 167-190 (444)
401 2aka_B Dynamin-1; fusion prote 93.4 0.1 3.5E-06 39.9 4.9 26 14-39 25-50 (299)
402 4b4t_M 26S protease regulatory 93.3 0.037 1.3E-06 46.0 2.4 25 13-37 213-237 (434)
403 3lv8_A DTMP kinase, thymidylat 93.3 0.13 4.5E-06 39.1 5.3 23 15-37 27-49 (236)
404 1a5t_A Delta prime, HOLB; zinc 93.3 0.44 1.5E-05 37.5 8.6 23 15-37 24-46 (334)
405 3gmt_A Adenylate kinase; ssgci 93.3 0.05 1.7E-06 41.5 2.9 22 16-37 9-30 (230)
406 4tmk_A Protein (thymidylate ki 93.2 0.15 5.1E-06 38.0 5.5 22 16-37 4-25 (213)
407 3nbx_X ATPase RAVA; AAA+ ATPas 93.2 0.036 1.2E-06 46.8 2.2 23 16-38 42-64 (500)
408 3hu3_A Transitional endoplasmi 93.2 0.044 1.5E-06 46.0 2.8 23 15-37 238-260 (489)
409 3ug7_A Arsenical pump-driving 93.2 0.11 3.8E-06 41.5 5.0 26 12-37 23-48 (349)
410 2yyz_A Sugar ABC transporter, 93.2 0.056 1.9E-06 43.8 3.2 23 15-37 29-51 (359)
411 2g3y_A GTP-binding protein GEM 93.2 0.056 1.9E-06 40.1 3.0 23 15-37 37-59 (211)
412 3k9g_A PF-32 protein; ssgcid, 93.2 0.059 2E-06 40.8 3.2 25 13-37 25-50 (267)
413 1g29_1 MALK, maltose transport 93.2 0.056 1.9E-06 43.9 3.2 23 15-37 29-51 (372)
414 2it1_A 362AA long hypothetical 93.1 0.057 1.9E-06 43.8 3.2 23 15-37 29-51 (362)
415 2dhr_A FTSH; AAA+ protein, hex 93.1 0.048 1.6E-06 46.1 2.8 20 18-37 67-86 (499)
416 4b4t_L 26S protease subunit RP 93.1 0.042 1.4E-06 45.7 2.4 25 13-37 213-237 (437)
417 3ld9_A DTMP kinase, thymidylat 93.1 0.076 2.6E-06 40.1 3.7 24 14-37 20-43 (223)
418 2ce7_A Cell division protein F 93.1 0.045 1.5E-06 46.0 2.6 21 17-37 51-71 (476)
419 3d31_A Sulfate/molybdate ABC t 93.1 0.051 1.7E-06 43.8 2.8 23 15-37 26-48 (348)
420 3rlf_A Maltose/maltodextrin im 93.1 0.059 2E-06 44.0 3.2 23 15-37 29-51 (381)
421 2xtp_A GTPase IMAP family memb 93.1 0.075 2.6E-06 40.1 3.6 26 14-39 21-46 (260)
422 2yv5_A YJEQ protein; hydrolase 93.0 0.059 2E-06 42.2 3.1 21 16-36 166-186 (302)
423 1v43_A Sugar-binding transport 93.0 0.06 2.1E-06 43.8 3.2 23 15-37 37-59 (372)
424 3b1v_A Ferrous iron uptake tra 93.0 0.099 3.4E-06 40.4 4.3 24 15-38 3-26 (272)
425 3cwq_A Para family chromosome 93.0 0.065 2.2E-06 39.5 3.1 21 17-37 2-23 (209)
426 2obl_A ESCN; ATPase, hydrolase 93.0 0.059 2E-06 43.3 3.1 24 15-38 71-94 (347)
427 4b4t_J 26S protease regulatory 93.0 0.045 1.5E-06 45.1 2.4 23 15-37 182-204 (405)
428 3eph_A TRNA isopentenyltransfe 93.0 0.063 2.2E-06 44.3 3.3 22 16-37 3-24 (409)
429 2ewv_A Twitching motility prot 93.0 0.065 2.2E-06 43.3 3.3 24 14-37 135-158 (372)
430 4dkx_A RAS-related protein RAB 93.0 0.066 2.3E-06 39.9 3.1 22 17-38 15-36 (216)
431 1oxx_K GLCV, glucose, ABC tran 92.9 0.044 1.5E-06 44.2 2.3 23 15-37 31-53 (353)
432 1wf3_A GTP-binding protein; GT 92.9 0.079 2.7E-06 41.5 3.6 25 14-38 6-30 (301)
433 3q9l_A Septum site-determining 92.9 0.077 2.6E-06 39.7 3.5 22 16-37 3-25 (260)
434 2gza_A Type IV secretion syste 92.9 0.053 1.8E-06 43.6 2.7 23 15-37 175-197 (361)
435 3iby_A Ferrous iron transport 92.8 0.069 2.4E-06 40.8 3.2 23 16-38 2-24 (256)
436 1g8p_A Magnesium-chelatase 38 92.8 0.032 1.1E-06 43.7 1.3 20 18-37 48-67 (350)
437 3cpj_B GTP-binding protein YPT 92.8 0.067 2.3E-06 39.3 3.0 24 15-38 13-36 (223)
438 3t5d_A Septin-7; GTP-binding p 92.8 0.062 2.1E-06 41.2 2.9 22 17-38 10-31 (274)
439 3ez2_A Plasmid partition prote 92.8 0.084 2.9E-06 42.6 3.8 26 12-37 105-131 (398)
440 2rcn_A Probable GTPase ENGC; Y 92.8 0.069 2.3E-06 43.3 3.2 23 16-38 216-238 (358)
441 1m8p_A Sulfate adenylyltransfe 92.8 0.077 2.6E-06 45.5 3.6 23 15-37 396-418 (573)
442 1x6v_B Bifunctional 3'-phospho 92.7 0.069 2.4E-06 46.4 3.3 24 14-37 51-74 (630)
443 2oze_A ORF delta'; para, walke 92.7 0.052 1.8E-06 41.8 2.4 23 15-37 34-59 (298)
444 3lxw_A GTPase IMAP family memb 92.7 0.073 2.5E-06 40.3 3.2 25 15-39 21-45 (247)
445 2zts_A Putative uncharacterize 92.7 0.075 2.6E-06 39.3 3.1 51 14-67 29-79 (251)
446 3a1s_A Iron(II) transport prot 92.6 0.084 2.9E-06 40.3 3.4 24 15-38 5-28 (258)
447 3io3_A DEHA2D07832P; chaperone 92.6 0.085 2.9E-06 42.4 3.6 25 13-37 16-40 (348)
448 1r6b_X CLPA protein; AAA+, N-t 92.6 0.11 3.9E-06 45.4 4.6 23 15-37 207-229 (758)
449 2r8r_A Sensor protein; KDPD, P 92.6 0.075 2.6E-06 40.5 3.0 21 17-37 8-28 (228)
450 3zq6_A Putative arsenical pump 92.6 0.19 6.6E-06 39.5 5.5 26 12-37 10-36 (324)
451 1wcv_1 SOJ, segregation protei 92.6 0.059 2E-06 40.7 2.4 24 14-37 5-29 (257)
452 1byi_A Dethiobiotin synthase; 92.6 0.092 3.2E-06 38.5 3.4 22 16-37 2-24 (224)
453 3gd7_A Fusion complex of cysti 92.5 0.077 2.6E-06 43.4 3.2 23 15-37 47-69 (390)
454 3ch4_B Pmkase, phosphomevalona 92.5 0.11 3.8E-06 38.8 3.7 25 13-37 9-33 (202)
455 3u61_B DNA polymerase accessor 92.5 0.11 3.6E-06 40.5 3.8 23 15-37 48-70 (324)
456 2qmh_A HPR kinase/phosphorylas 92.4 0.081 2.8E-06 39.7 3.0 23 15-37 34-56 (205)
457 1f5n_A Interferon-induced guan 92.4 0.15 5.1E-06 44.0 4.9 36 4-39 27-62 (592)
458 2qag_B Septin-6, protein NEDD5 92.4 0.064 2.2E-06 44.5 2.6 21 18-38 45-65 (427)
459 2npi_A Protein CLP1; CLP1-PCF1 92.4 0.063 2.2E-06 44.8 2.5 23 15-37 138-160 (460)
460 3ozx_A RNAse L inhibitor; ATP 92.3 0.082 2.8E-06 45.0 3.3 24 14-37 24-47 (538)
461 1u0l_A Probable GTPase ENGC; p 92.3 0.084 2.9E-06 41.3 3.1 23 16-38 170-192 (301)
462 2qtf_A Protein HFLX, GTP-bindi 92.3 0.081 2.8E-06 42.7 3.1 26 14-39 178-203 (364)
463 2pt7_A CAG-ALFA; ATPase, prote 92.3 0.058 2E-06 42.9 2.2 22 16-37 172-193 (330)
464 1yqt_A RNAse L inhibitor; ATP- 92.3 0.081 2.8E-06 44.9 3.2 23 16-38 313-335 (538)
465 1g41_A Heat shock protein HSLU 92.3 0.072 2.5E-06 44.4 2.8 23 15-37 50-72 (444)
466 3jvv_A Twitching mobility prot 92.3 0.091 3.1E-06 42.4 3.3 22 16-37 124-145 (356)
467 3ozx_A RNAse L inhibitor; ATP 92.3 0.078 2.7E-06 45.1 3.0 23 16-38 295-317 (538)
468 3pxi_A Negative regulator of g 92.2 0.088 3E-06 46.2 3.4 20 18-37 204-223 (758)
469 2qag_C Septin-7; cell cycle, c 92.2 0.076 2.6E-06 43.8 2.8 21 18-38 34-54 (418)
470 3k1j_A LON protease, ATP-depen 92.2 0.15 5.2E-06 43.6 4.8 22 16-37 61-82 (604)
471 4b4t_H 26S protease regulatory 92.2 0.055 1.9E-06 45.4 2.0 25 13-37 241-265 (467)
472 1yqt_A RNAse L inhibitor; ATP- 92.2 0.086 3E-06 44.8 3.2 23 15-37 47-69 (538)
473 2e87_A Hypothetical protein PH 92.1 0.095 3.2E-06 41.8 3.2 26 13-38 165-190 (357)
474 3upu_A ATP-dependent DNA helic 92.1 0.17 5.9E-06 41.7 4.9 21 17-37 47-67 (459)
475 3iqw_A Tail-anchored protein t 92.1 0.24 8.2E-06 39.5 5.5 24 14-37 15-38 (334)
476 1t9h_A YLOQ, probable GTPase E 92.1 0.048 1.6E-06 43.2 1.4 22 16-37 174-195 (307)
477 2yc2_C IFT27, small RAB-relate 92.1 0.035 1.2E-06 39.8 0.5 23 16-38 21-43 (208)
478 3tmk_A Thymidylate kinase; pho 92.0 0.099 3.4E-06 39.2 3.1 23 15-37 5-27 (216)
479 1qvr_A CLPB protein; coiled co 92.0 0.077 2.6E-06 47.3 2.8 21 17-37 193-213 (854)
480 4b4t_I 26S protease regulatory 92.0 0.073 2.5E-06 44.3 2.4 24 14-37 215-238 (437)
481 3pg5_A Uncharacterized protein 91.9 0.069 2.3E-06 42.9 2.2 23 15-37 1-24 (361)
482 2dpy_A FLII, flagellum-specifi 91.9 0.16 5.4E-06 42.1 4.3 25 14-38 156-180 (438)
483 1ni3_A YCHF GTPase, YCHF GTP-b 91.8 0.13 4.5E-06 42.1 3.8 24 15-38 20-43 (392)
484 3llm_A ATP-dependent RNA helic 91.8 0.3 1E-05 36.3 5.5 20 16-35 77-96 (235)
485 1f2t_A RAD50 ABC-ATPase; DNA d 91.7 0.14 4.8E-06 35.8 3.4 23 15-37 23-45 (149)
486 2orw_A Thymidine kinase; TMTK, 91.7 0.11 3.8E-06 37.7 3.0 22 16-37 4-25 (184)
487 3bk7_A ABC transporter ATP-bin 91.7 0.1 3.5E-06 45.0 3.2 24 15-38 382-405 (607)
488 4djt_A GTP-binding nuclear pro 91.7 0.042 1.4E-06 40.0 0.6 23 15-37 11-33 (218)
489 2qag_A Septin-2, protein NEDD5 91.7 0.083 2.8E-06 42.5 2.4 22 17-38 39-60 (361)
490 3j16_B RLI1P; ribosome recycli 91.6 0.11 3.7E-06 44.9 3.2 23 16-38 379-401 (608)
491 2ph1_A Nucleotide-binding prot 91.6 0.12 3.9E-06 39.3 3.1 22 15-36 18-40 (262)
492 3euj_A Chromosome partition pr 91.6 0.11 3.8E-06 43.7 3.2 22 16-37 30-51 (483)
493 1p6x_A Thymidine kinase; P-loo 91.6 0.13 4.5E-06 41.2 3.5 23 15-37 7-29 (334)
494 2xj4_A MIPZ; replication, cell 91.5 0.12 4E-06 39.9 3.0 22 16-37 5-27 (286)
495 1dek_A Deoxynucleoside monopho 91.5 0.14 4.8E-06 39.1 3.4 22 16-37 2-23 (241)
496 3hdt_A Putative kinase; struct 91.4 0.14 4.7E-06 38.6 3.3 23 15-37 14-36 (223)
497 1mky_A Probable GTP-binding pr 91.4 0.18 6.3E-06 41.3 4.3 26 14-39 179-204 (439)
498 3th5_A RAS-related C3 botulinu 90.8 0.036 1.2E-06 40.0 0.0 24 15-38 30-53 (204)
499 1g8f_A Sulfate adenylyltransfe 91.4 0.11 3.6E-06 44.1 2.9 24 14-37 394-417 (511)
500 1jwy_B Dynamin A GTPase domain 91.4 0.13 4.4E-06 39.8 3.2 27 13-39 22-48 (315)
No 1
>2a5y_B CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis elegans} SCOP: a.4.5.80 a.77.1.3 c.37.1.20 PDB: 3lqq_A* 3lqr_A*
Probab=99.89 E-value=3.3e-23 Score=177.14 Aligned_cols=137 Identities=11% Similarity=0.091 Sum_probs=104.2
Q ss_pred HHHHHHHhcC-CCCcEEEEEEcCCCccHHHHHHHHhc--cccccccCceEEEEEcCCCC--CHHHHHHHHHHHhCCCC--
Q 035574 2 EELLDLLIEG-PTQLSVVAILDSIGLDKTAFTAEAYN--SSYMKHYFDYLAWIPAPYHY--DPDQILDIVAVILLPFS-- 74 (156)
Q Consensus 2 ~~l~~~L~~~-~~~~~vi~I~G~gGvGKTtLa~~vy~--~~~v~~~F~~~~wv~vs~~~--~~~~l~~~il~~l~~~~-- 74 (156)
++|.++|..+ +...++|+|+||||+||||||+++|+ |.+++.+|+.++||++++.+ +...+++.|+.++....
T Consensus 138 ~~l~~~L~~~~~~~~~vv~I~G~gGvGKTtLA~~v~~~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~~~il~~l~~~~~~ 217 (549)
T 2a5y_B 138 DRVIKKLDEMCDLDSFFLFLHGRAGSGKSVIASQALSKSDQLIGINYDSIVWLKDSGTAPKSTFDLFTDILLMLKSEDDL 217 (549)
T ss_dssp HHHHHHHHHHTTSSSEEEEEECSTTSSHHHHHHHHHHHCSSTBTTTBSEEEEEECCCCSTTHHHHHHHHHHHHHTTTSCC
T ss_pred HHHHHHHhcccCCCceEEEEEcCCCCCHHHHHHHHHHhhhHHHhccCCcEEEEEECCCCCCCHHHHHHHHHHHHhcCccc
Confidence 4567777554 45689999999999999999999998 77899999999999999985 88899999999886320
Q ss_pred -------c----------------c-c--------------cCCCCCCCeEEEEEcCCHHHHhhcCcCccccccccc---
Q 035574 75 -------M----------------F-K--------------ILPDNQNGSRVLITLTQIKMVTSFQLEDRENIRLDL--- 113 (156)
Q Consensus 75 -------~----------------~-~--------------~l~~~~~gsrIivTTR~~~Va~~~~~~~~~~~~l~~--- 113 (156)
. + . .++. .+||+||||||+..|+..++... ..++++.
T Consensus 218 ~~~~~~~~~~~~~l~~~l~~~L~~~kr~LlVLDdv~~~~~~~~~~-~~gs~ilvTTR~~~v~~~~~~~~-~~~~l~~L~~ 295 (549)
T 2a5y_B 218 LNFPSVEHVTSVVLKRMICNALIDRPNTLFVFDDVVQEETIRWAQ-ELRLRCLVTTRDVEISNAASQTC-EFIEVTSLEI 295 (549)
T ss_dssp TTCCCCTTCCHHHHHHHHHHHHTTSTTEEEEEEEECCHHHHHHHH-HTTCEEEEEESBGGGGGGCCSCE-EEEECCCCCH
T ss_pred ccccccccccHHHHHHHHHHHHcCCCcEEEEEECCCCchhhcccc-cCCCEEEEEcCCHHHHHHcCCCC-eEEECCCCCH
Confidence 0 1 1 1221 27999999999999998875211 1122221
Q ss_pred --------------------cCChhhHhhhcCChHHHHHHHhCCCCc
Q 035574 114 --------------------VPTGGPLRATYQGWPFLILYHGSISLE 140 (156)
Q Consensus 114 --------------------~~~~~~i~~~~~g~pl~~~~~gs~~~~ 140 (156)
...+..|+++|+|+|||+.++|+....
T Consensus 296 ~ea~~Lf~~~a~~~~~~~~~~~~~~~I~~~c~GlPLAl~~~g~~l~~ 342 (549)
T 2a5y_B 296 DECYDFLEAYGMPMPVGEKEEDVLNKTIELSSGNPATLMMFFKSCEP 342 (549)
T ss_dssp HHHHHHHHHTSCCCC--CHHHHHHHHHHHHHTTCHHHHHHHHTTCCS
T ss_pred HHHHHHHHHHhcCCCCchhHHHHHHHHHHHhCCChHHHHHHHHHhcc
Confidence 224677999999999999999997533
No 2
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=99.75 E-value=2.6e-18 Score=155.69 Aligned_cols=135 Identities=16% Similarity=0.182 Sum_probs=91.6
Q ss_pred HHHHHHHhcCCCCcEEEEEEcCCCccHHHHHHHHhccccc-cccCc-eEEEEEcCCCCCH--HHHHHHHHHHhCCCC---
Q 035574 2 EELLDLLIEGPTQLSVVAILDSIGLDKTAFTAEAYNSSYM-KHYFD-YLAWIPAPYHYDP--DQILDIVAVILLPFS--- 74 (156)
Q Consensus 2 ~~l~~~L~~~~~~~~vi~I~G~gGvGKTtLa~~vy~~~~v-~~~F~-~~~wv~vs~~~~~--~~l~~~il~~l~~~~--- 74 (156)
++|.++|...+...++++|+||||+||||||+++|++.+. ..+|. .++|+++++..+. ...+..++..+....
T Consensus 134 ~~l~~~l~~~~~~~~~v~i~G~gG~GKTtLa~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 213 (1249)
T 3sfz_A 134 HAIQQKLWKLNGEPGWVTIYGMAGCGKSVLAAEAVRDHSLLEGCFSGGVHWVSIGKQDKSGLLMKLQNLCMRLDQEESFS 213 (1249)
T ss_dssp HHHHHHHHTTTTSCEEEEEECSTTSSHHHHHHHHTCCHHHHTTTSTTCEEEEECCSCCHHHHHHHHHHHHHHHTTTCTTC
T ss_pred HHHHHHHhhccCCCCEEEEEeCCCCCHHHHHHHHhcChhHHHhhCCCeEEEEEECCcCchHHHHHHHHHHHHhhhhcccc
Confidence 3455666556677899999999999999999999997544 45554 5789999886543 333555555553211
Q ss_pred -----c----------------------------cccCCCCCCCeEEEEEcCCHHHHhhc-CcCccccccc---------
Q 035574 75 -----M----------------------------FKILPDNQNGSRVLITLTQIKMVTSF-QLEDRENIRL--------- 111 (156)
Q Consensus 75 -----~----------------------------~~~l~~~~~gsrIivTTR~~~Va~~~-~~~~~~~~~l--------- 111 (156)
. ...+..-.+||+||||||++.|+..+ +... .+.+
T Consensus 214 ~~~~~~~~~~~~~l~~~l~~~~~~~LlvlDd~~~~~~~~~~~~~~~ilvTtR~~~~~~~~~~~~~--~~~~~~~l~~~~a 291 (1249)
T 3sfz_A 214 QRLPLNIEEAKDRLRVLMLRKHPRSLLILDDVWDPWVLKAFDNQCQILLTTRDKSVTDSVMGPKH--VVPVESGLGREKG 291 (1249)
T ss_dssp SSCCSSHHHHHHHHHHHTSSSSCSCEEEEESCCCHHHHTTTCSSCEEEEEESSTTTTTTCCSCBC--CEECCSSCCHHHH
T ss_pred cCCCCCHHHHHHHHHHHHhccCCCEEEEEecCCCHHHHHhhcCCCEEEEEcCCHHHHHhhcCCce--EEEecCCCCHHHH
Confidence 0 00112225799999999999998643 2211 1111
Q ss_pred -------------cccCChhhHhhhcCChHHHHHHHhCCC
Q 035574 112 -------------DLVPTGGPLRATYQGWPFLILYHGSIS 138 (156)
Q Consensus 112 -------------~~~~~~~~i~~~~~g~pl~~~~~gs~~ 138 (156)
+..+.+.+|+++|+|+|||+..+|+..
T Consensus 292 ~~l~~~~~~~~~~~~~~~~~~i~~~~~glPLal~~~~~~l 331 (1249)
T 3sfz_A 292 LEILSLFVNMKKEDLPAEAHSIIKECKGSPLVVSLIGALL 331 (1249)
T ss_dssp HHHHHHHHTSCSTTCCTHHHHHHHHTTTCHHHHHHHHHHH
T ss_pred HHHHHHhhCCChhhCcHHHHHHHHHhCCCHHHHHHHHHHh
Confidence 222346789999999999999999853
No 3
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A*
Probab=99.72 E-value=1.6e-18 Score=156.88 Aligned_cols=130 Identities=15% Similarity=0.191 Sum_probs=91.0
Q ss_pred HHHHHHhcCCCCcEEEEEEcCCCccHHHHHHHHhccccccccCce-EEEEEcCCCCCHHHHHHHHHHHhC---C------
Q 035574 3 ELLDLLIEGPTQLSVVAILDSIGLDKTAFTAEAYNSSYMKHYFDY-LAWIPAPYHYDPDQILDIVAVILL---P------ 72 (156)
Q Consensus 3 ~l~~~L~~~~~~~~vi~I~G~gGvGKTtLa~~vy~~~~v~~~F~~-~~wv~vs~~~~~~~l~~~il~~l~---~------ 72 (156)
+|.++|.+. ...++|+|+||||+||||||+++|++.+++.+|+. ++|+++++.++...++..+++.+. +
T Consensus 139 eL~elL~~~-d~~RVV~IvGmGGIGKTTLAk~Vy~d~rV~~~Fd~gV~WVsVs~~~d~~~IL~~Ll~lL~~i~~~~~~~~ 217 (1221)
T 1vt4_I 139 KLRQALLEL-RPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRS 217 (1221)
T ss_dssp HHHHHHHHC-CSSCEEEECCSTTSSHHHHHHHHHHHCHHHHHHSSCEEEEECCCSSSHHHHHHHHHHHHHHHCSSSTTTS
T ss_pred HHHHHHhcc-CCCeEEEEEcCCCccHHHHHHHHHHhhHHHHhCCCcEEEEEeCCCCCHHHHHHHHHHHHhhcCccccccc
Confidence 455555542 34799999999999999999999998889999997 999999999998887777666421 0
Q ss_pred CC------------------------c--------------cccCCCCCCCeEEEEEcCCHHHHhhcCcCcccccccc--
Q 035574 73 FS------------------------M--------------FKILPDNQNGSRVLITLTQIKMVTSFQLEDRENIRLD-- 112 (156)
Q Consensus 73 ~~------------------------~--------------~~~l~~~~~gsrIivTTR~~~Va~~~~~~~~~~~~l~-- 112 (156)
.. . ...|+ +||+||||||++.++..+.... .+.++
T Consensus 218 d~~~~ip~~leeL~e~Lr~lL~~l~~KRvLLVLDDVwd~eqLe~f~---pGSRILVTTRd~~Va~~l~g~~--vy~LeL~ 292 (1221)
T 1vt4_I 218 DHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFN---LSCKILLTTRFKQVTDFLSAAT--TTHISLD 292 (1221)
T ss_dssp CCCSSHHHHHHHHHHHHHHHHHHSTTSSCEEEEESCCCHHHHHHHH---SSCCEEEECSCSHHHHHHHHHS--SCEEEEC
T ss_pred ccccCCCCCHHHHHHHHHHHHHhhcCCCEEEEEeCcChHHHHHhhC---CCeEEEEeccChHHHHhcCCCe--EEEecCc
Confidence 00 0 11222 6999999999999986443211 12222
Q ss_pred ----ccCC---------------hhhHhhhcCChHHHHHHHhCCC
Q 035574 113 ----LVPT---------------GGPLRATYQGWPFLILYHGSIS 138 (156)
Q Consensus 113 ----~~~~---------------~~~i~~~~~g~pl~~~~~gs~~ 138 (156)
.++. .....+-|+|||||+.++|+..
T Consensus 293 d~dL~LS~eEA~eLF~~~~g~~~eeL~~eICgGLPLALkLaGs~L 337 (1221)
T 1vt4_I 293 HHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESI 337 (1221)
T ss_dssp SSSSCCCHHHHHHHHHHHHCCCTTTHHHHHCCCCHHHHHHHHHHH
T ss_pred cccCCcCHHHHHHHHHHHcCCCHHHHHHHHhCCCHHHHHHHHHHH
Confidence 1221 1123345999999999999863
No 4
>1z6t_A APAF-1, apoptotic protease activating factor 1; caspase activation, ADP, nucleotide binding, CARD, apoptosis; HET: ADP; 2.21A {Homo sapiens}
Probab=99.63 E-value=6.3e-16 Score=132.07 Aligned_cols=130 Identities=17% Similarity=0.197 Sum_probs=85.7
Q ss_pred HHHHHhcCCCCcEEEEEEcCCCccHHHHHHHHhccccc-cccCc-eEEEEEcCCCCCHHHHHHHHH---HHhCC-----C
Q 035574 4 LLDLLIEGPTQLSVVAILDSIGLDKTAFTAEAYNSSYM-KHYFD-YLAWIPAPYHYDPDQILDIVA---VILLP-----F 73 (156)
Q Consensus 4 l~~~L~~~~~~~~vi~I~G~gGvGKTtLa~~vy~~~~v-~~~F~-~~~wv~vs~~~~~~~l~~~il---~~l~~-----~ 73 (156)
|.++|.....+.++++|+||||+||||||.++|++.++ ..+|+ .++|+++++. +...++..+. ..+.. .
T Consensus 136 L~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~v~wv~~~~~-~~~~~~~~l~~l~~~l~~~~~~~~ 214 (591)
T 1z6t_A 136 IQQKLSKLKGEPGWVTIHGMAGCGKSVLAAEAVRDHSLLEGCFPGGVHWVSVGKQ-DKSGLLMKLQNLCTRLDQDESFSQ 214 (591)
T ss_dssp HHHHHTTSTTSCEEEEEECCTTSSHHHHHHHHHCCHHHHHHHCTTCEEEEEEESC-CHHHHHHHHHHHHHHHCSSCCSCS
T ss_pred HHHHHhcccCCCceEEEEcCCCCCHHHHHHHHHhchhHHHhhCCCceEEEECCCC-chHHHHHHHHHHHHHhcccccccc
Confidence 44444433456899999999999999999999997666 78895 7999999775 3333443332 23321 0
Q ss_pred -C--c-------------------------------cccCCCCCCCeEEEEEcCCHHHHhhcCcCccccc----------
Q 035574 74 -S--M-------------------------------FKILPDNQNGSRVLITLTQIKMVTSFQLEDRENI---------- 109 (156)
Q Consensus 74 -~--~-------------------------------~~~l~~~~~gsrIivTTR~~~Va~~~~~~~~~~~---------- 109 (156)
. . ..++ .+||+||||||+..++..++....+..
T Consensus 215 ~~~~~~~~~~~~l~~~l~~~~~~~LLVLDdv~~~~~l~~l---~~~~~ilvTsR~~~~~~~~~~~~~~v~~l~~L~~~ea 291 (591)
T 1z6t_A 215 RLPLNIEEAKDRLRILMLRKHPRSLLILDDVWDSWVLKAF---DSQCQILLTTRDKSVTDSVMGPKYVVPVESSLGKEKG 291 (591)
T ss_dssp SCCCSHHHHHHHHHHHHHHTCTTCEEEEEEECCHHHHHTT---CSSCEEEEEESCGGGGTTCCSCEEEEECCSSCCHHHH
T ss_pred CCCCCHHHHHHHHHHHHccCCCCeEEEEeCCCCHHHHHHh---cCCCeEEEECCCcHHHHhcCCCceEeecCCCCCHHHH
Confidence 0 0 1122 468999999999998876431110000
Q ss_pred -----------cccccCChhhHhhhcCChHHHHHHHhCC
Q 035574 110 -----------RLDLVPTGGPLRATYQGWPFLILYHGSI 137 (156)
Q Consensus 110 -----------~l~~~~~~~~i~~~~~g~pl~~~~~gs~ 137 (156)
.....+....|.++|+|||||+..+|+.
T Consensus 292 ~~L~~~~~~~~~~~~~~~~~~i~~~~~G~PLal~~~a~~ 330 (591)
T 1z6t_A 292 LEILSLFVNMKKADLPEQAHSIIKECKGSPLVVSLIGAL 330 (591)
T ss_dssp HHHHHHHHTSCGGGSCTHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHhCCCcccccHHHHHHHHHhCCCcHHHHHHHHH
Confidence 0011233467899999999999988874
No 5
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*
Probab=97.70 E-value=5.6e-05 Score=60.90 Aligned_cols=56 Identities=13% Similarity=0.072 Sum_probs=37.8
Q ss_pred cEEEEE--EcCCCccHHHHHHHHhcccccc---ccCce-EEEEEcCCCCCHHHHHHHHHHHh
Q 035574 15 LSVVAI--LDSIGLDKTAFTAEAYNSSYMK---HYFDY-LAWIPAPYHYDPDQILDIVAVIL 70 (156)
Q Consensus 15 ~~vi~I--~G~gGvGKTtLa~~vy~~~~v~---~~F~~-~~wv~vs~~~~~~~l~~~il~~l 70 (156)
...+-| +|++|+|||||++.+++...-. ..|+. .+|+...+..+...++..++.++
T Consensus 50 ~~~~li~i~G~~G~GKT~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l 111 (412)
T 1w5s_A 50 DVNMIYGSIGRVGIGKTTLAKFTVKRVSEAAAKEGLTVKQAYVNAFNAPNLYTILSLIVRQT 111 (412)
T ss_dssp CEEEEEECTTCCSSSHHHHHHHHHHHHHHHHHHTTCCEEEEEEEGGGCCSHHHHHHHHHHHH
T ss_pred CCEEEEeCcCcCCCCHHHHHHHHHHHHHHHHhccCCceeEEEEECCCCCCHHHHHHHHHHHh
Confidence 445556 9999999999999999842211 01333 57777666667777776666655
No 6
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=97.62 E-value=6.9e-05 Score=59.91 Aligned_cols=56 Identities=18% Similarity=0.094 Sum_probs=37.8
Q ss_pred CCcEEEEEEcCCCccHHHHHHHHhcccccccc--------CceEEEEEcCCCC-CHHHHHHHHHHHh
Q 035574 13 TQLSVVAILDSIGLDKTAFTAEAYNSSYMKHY--------FDYLAWIPAPYHY-DPDQILDIVAVIL 70 (156)
Q Consensus 13 ~~~~vi~I~G~gGvGKTtLa~~vy~~~~v~~~--------F~~~~wv~vs~~~-~~~~l~~~il~~l 70 (156)
...+.+-|+|.+|+|||+||+.+++. .... ....+|+..+... +...++..++..+
T Consensus 43 ~~~~~vll~G~~G~GKT~la~~l~~~--~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~l~~~l 107 (384)
T 2qby_B 43 EVKFSNLFLGLTGTGKTFVSKYIFNE--IEEVKKEDEEYKDVKQAYVNCREVGGTPQAVLSSLAGKL 107 (384)
T ss_dssp CCCCEEEEEECTTSSHHHHHHHHHHH--HHHHHHHSSSSTTCEEEEEEHHHHCSCHHHHHHHHHHHH
T ss_pred CCCCcEEEECCCCCCHHHHHHHHHHH--HHHHhhhhcCCCCceEEEEECccCCCCHHHHHHHHHHHh
Confidence 34568999999999999999999883 3211 2236777765544 5555555555544
No 7
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=97.59 E-value=0.0004 Score=50.40 Aligned_cols=49 Identities=12% Similarity=0.049 Sum_probs=30.3
Q ss_pred EEEEEcCCCccHHHHHHHHhccccccccCc-eEEEEEcCCCCCHHHHHHHH
Q 035574 17 VVAILDSIGLDKTAFTAEAYNSSYMKHYFD-YLAWIPAPYHYDPDQILDIV 66 (156)
Q Consensus 17 vi~I~G~gGvGKTtLa~~vy~~~~v~~~F~-~~~wv~vs~~~~~~~l~~~i 66 (156)
.+-|+|.+|+|||+||+.+++... ...+. ....+..+.......+...+
T Consensus 40 ~~ll~G~~G~GKT~l~~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 89 (226)
T 2chg_A 40 HLLFSGPPGTGKTATAIALARDLF-GENWRDNFIEMNASDERGIDVVRHKI 89 (226)
T ss_dssp CEEEECSTTSSHHHHHHHHHHHHH-GGGGGGGEEEEETTCTTCHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHHh-ccccccceEEeccccccChHHHHHHH
Confidence 388999999999999999987321 11222 23444555555554444333
No 8
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=97.57 E-value=0.0001 Score=58.61 Aligned_cols=55 Identities=15% Similarity=0.097 Sum_probs=37.0
Q ss_pred CCcEEEEEEcCCCccHHHHHHHHhcccccccc-----Cc-eEEEEEcCCCCCHHHHHHHHHHH
Q 035574 13 TQLSVVAILDSIGLDKTAFTAEAYNSSYMKHY-----FD-YLAWIPAPYHYDPDQILDIVAVI 69 (156)
Q Consensus 13 ~~~~vi~I~G~gGvGKTtLa~~vy~~~~v~~~-----F~-~~~wv~vs~~~~~~~l~~~il~~ 69 (156)
...+.+-|+|.+|+||||||+.+++. .... .+ ..+|+......+...++..++.+
T Consensus 42 ~~~~~vll~G~~G~GKT~l~~~~~~~--~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~l~~~ 102 (387)
T 2v1u_A 42 EKPSNALLYGLTGTGKTAVARLVLRR--LEARASSLGVLVKPIYVNARHRETPYRVASAIAEA 102 (387)
T ss_dssp CCCCCEEECBCTTSSHHHHHHHHHHH--HHHHHHHHTCCEEEEEEETTTSCSHHHHHHHHHHH
T ss_pred CCCCcEEEECCCCCCHHHHHHHHHHH--HHHHHhccCCCeEEEEEECCcCCCHHHHHHHHHHH
Confidence 44567899999999999999999883 3221 12 35677766655555555544443
No 9
>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20
Probab=97.55 E-value=0.00021 Score=56.07 Aligned_cols=61 Identities=10% Similarity=0.045 Sum_probs=39.7
Q ss_pred CHHHHHHHhcCCCCcEEEEEEcCCCccHHHHHHHHhccccccccCceEEEEEcCCC-----CCHHHHHHHHHH
Q 035574 1 MEELLDLLIEGPTQLSVVAILDSIGLDKTAFTAEAYNSSYMKHYFDYLAWIPAPYH-----YDPDQILDIVAV 68 (156)
Q Consensus 1 r~~l~~~L~~~~~~~~vi~I~G~gGvGKTtLa~~vy~~~~v~~~F~~~~wv~vs~~-----~~~~~l~~~il~ 68 (156)
|++.++.|.+ -.. +++.|+|+.|+|||+|++++.+. ... ..+|+..... .+...+...+.+
T Consensus 18 R~~el~~L~~-l~~-~~v~i~G~~G~GKT~L~~~~~~~--~~~---~~~~~~~~~~~~~~~~~~~~~~~~l~~ 83 (357)
T 2fna_A 18 REKEIEKLKG-LRA-PITLVLGLRRTGKSSIIKIGINE--LNL---PYIYLDLRKFEERNYISYKDFLLELQK 83 (357)
T ss_dssp CHHHHHHHHH-TCS-SEEEEEESTTSSHHHHHHHHHHH--HTC---CEEEEEGGGGTTCSCCCHHHHHHHHHH
T ss_pred hHHHHHHHHH-hcC-CcEEEECCCCCCHHHHHHHHHHh--cCC---CEEEEEchhhccccCCCHHHHHHHHHH
Confidence 4555566654 333 69999999999999999999884 322 2578876532 344444444433
No 10
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=97.49 E-value=0.00042 Score=55.22 Aligned_cols=54 Identities=17% Similarity=0.136 Sum_probs=38.7
Q ss_pred cEEEEEEcCCCccHHHHHHHHhccccccccC-ceEEEEEcCCCCCHHHHHHHHHHHh
Q 035574 15 LSVVAILDSIGLDKTAFTAEAYNSSYMKHYF-DYLAWIPAPYHYDPDQILDIVAVIL 70 (156)
Q Consensus 15 ~~vi~I~G~gGvGKTtLa~~vy~~~~v~~~F-~~~~wv~vs~~~~~~~l~~~il~~l 70 (156)
.+.+.|+|.+|+|||||++.+++ ...... ...+|+..+...+...+...++..+
T Consensus 44 ~~~~li~G~~G~GKTtl~~~l~~--~~~~~~~~~~~~i~~~~~~~~~~~~~~l~~~l 98 (389)
T 1fnn_A 44 YPRATLLGRPGTGKTVTLRKLWE--LYKDKTTARFVYINGFIYRNFTAIIGEIARSL 98 (389)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHH--HHTTSCCCEEEEEETTTCCSHHHHHHHHHHHT
T ss_pred CCeEEEECCCCCCHHHHHHHHHH--HHhhhcCeeEEEEeCccCCCHHHHHHHHHHHh
Confidence 34889999999999999999988 333321 2356777667666666666666554
No 11
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=97.41 E-value=6.1e-05 Score=59.82 Aligned_cols=40 Identities=18% Similarity=0.132 Sum_probs=29.1
Q ss_pred CCcEEEEEEcCCCccHHHHHHHHhccccccccC---ceEEEEEcC
Q 035574 13 TQLSVVAILDSIGLDKTAFTAEAYNSSYMKHYF---DYLAWIPAP 54 (156)
Q Consensus 13 ~~~~vi~I~G~gGvGKTtLa~~vy~~~~v~~~F---~~~~wv~vs 54 (156)
.....+.|+|.+|+|||||++.+++ .....+ ...+|+...
T Consensus 43 ~~~~~vli~G~~G~GKTtl~~~l~~--~~~~~~~~~~~~~~i~~~ 85 (386)
T 2qby_A 43 EKPNNIFIYGLTGTGKTAVVKFVLS--KLHKKFLGKFKHVYINTR 85 (386)
T ss_dssp CCCCCEEEEECTTSSHHHHHHHHHH--HHHHHTCSSCEEEEEEHH
T ss_pred CCCCeEEEECCCCCCHHHHHHHHHH--HHHHHhcCCceEEEEECC
Confidence 4456889999999999999999988 443332 235666643
No 12
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}
Probab=97.25 E-value=0.00011 Score=57.52 Aligned_cols=32 Identities=13% Similarity=0.089 Sum_probs=26.0
Q ss_pred EEEEEEcCCCccHHHHHHHHhccccccccCceEEEEEcC
Q 035574 16 SVVAILDSIGLDKTAFTAEAYNSSYMKHYFDYLAWIPAP 54 (156)
Q Consensus 16 ~vi~I~G~gGvGKTtLa~~vy~~~~v~~~F~~~~wv~vs 54 (156)
+++.|+|+.|+|||||++++++.. + .+|+.+.
T Consensus 32 ~~v~i~G~~G~GKT~Ll~~~~~~~------~-~~~~~~~ 63 (350)
T 2qen_A 32 PLTLLLGIRRVGKSSLLRAFLNER------P-GILIDCR 63 (350)
T ss_dssp SEEEEECCTTSSHHHHHHHHHHHS------S-EEEEEHH
T ss_pred CeEEEECCCcCCHHHHHHHHHHHc------C-cEEEEee
Confidence 689999999999999999998732 2 5677654
No 13
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=97.12 E-value=0.00068 Score=49.56 Aligned_cols=36 Identities=17% Similarity=0.022 Sum_probs=26.9
Q ss_pred EEEEEEcCCCccHHHHHHHHhccccccccCceEEEEEc
Q 035574 16 SVVAILDSIGLDKTAFTAEAYNSSYMKHYFDYLAWIPA 53 (156)
Q Consensus 16 ~vi~I~G~gGvGKTtLa~~vy~~~~v~~~F~~~~wv~v 53 (156)
..+-|+|.+|+|||+||+.+++ .........+|+..
T Consensus 55 ~~~~l~G~~GtGKT~la~~i~~--~~~~~~~~~~~~~~ 90 (202)
T 2w58_A 55 KGLYLHGSFGVGKTYLLAAIAN--ELAKRNVSSLIVYV 90 (202)
T ss_dssp CEEEEECSTTSSHHHHHHHHHH--HHHTTTCCEEEEEH
T ss_pred CeEEEECCCCCCHHHHHHHHHH--HHHHcCCeEEEEEh
Confidence 6788999999999999999998 33333334556654
No 14
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=96.99 E-value=0.00059 Score=50.53 Aligned_cols=26 Identities=15% Similarity=0.165 Sum_probs=22.7
Q ss_pred CCCcEEEEEEcCCCccHHHHHHHHhc
Q 035574 12 PTQLSVVAILDSIGLDKTAFTAEAYN 37 (156)
Q Consensus 12 ~~~~~vi~I~G~gGvGKTtLa~~vy~ 37 (156)
.....+++|+|..|.|||||++.+..
T Consensus 19 ~~~g~~v~I~G~sGsGKSTl~~~l~~ 44 (208)
T 3c8u_A 19 QPGRQLVALSGAPGSGKSTLSNPLAA 44 (208)
T ss_dssp CCSCEEEEEECCTTSCTHHHHHHHHH
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHH
Confidence 34568999999999999999998866
No 15
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=96.94 E-value=0.00093 Score=47.28 Aligned_cols=24 Identities=17% Similarity=0.170 Sum_probs=20.7
Q ss_pred cEEEEEEcCCCccHHHHHHHHhcc
Q 035574 15 LSVVAILDSIGLDKTAFTAEAYNS 38 (156)
Q Consensus 15 ~~vi~I~G~gGvGKTtLa~~vy~~ 38 (156)
.+.+-|+|.+|+|||+||+.+++.
T Consensus 43 ~~~~ll~G~~G~GKT~l~~~~~~~ 66 (195)
T 1jbk_A 43 KNNPVLIGEPGVGKTAIVEGLAQR 66 (195)
T ss_dssp SCEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCceEEECCCCCCHHHHHHHHHHH
Confidence 455789999999999999999873
No 16
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=96.91 E-value=0.0024 Score=51.03 Aligned_cols=59 Identities=12% Similarity=0.054 Sum_probs=39.8
Q ss_pred CCCcEEEEEEcCCCccHHHHHHHHhccccccc------cCceEEEEEcCCCCCHHHHHHHHHHHhC
Q 035574 12 PTQLSVVAILDSIGLDKTAFTAEAYNSSYMKH------YFDYLAWIPAPYHYDPDQILDIVAVILL 71 (156)
Q Consensus 12 ~~~~~vi~I~G~gGvGKTtLa~~vy~~~~v~~------~F~~~~wv~vs~~~~~~~l~~~il~~l~ 71 (156)
......+-|+|.+|+|||++++.+.++..-.. .| ..+.+......+...+...|++++.
T Consensus 42 ~~~~~~lli~GpPGTGKT~~v~~v~~~L~~~~~~~~~~~~-~~v~INc~~~~t~~~~~~~I~~~L~ 106 (318)
T 3te6_A 42 SSQNKLFYITNADDSTKFQLVNDVMDELITSSARKELPIF-DYIHIDALELAGMDALYEKIWFAIS 106 (318)
T ss_dssp TTCCCEEEEECCCSHHHHHHHHHHHHHHHHTTTTTSSCCE-EEEEEETTCCC--HHHHHHHHHHHS
T ss_pred CCCCCeEEEECCCCCCHHHHHHHHHHHHHHHhhhccCCce-EEEEEeccccCCHHHHHHHHHHHhc
Confidence 34566788999999999999999988432111 12 2456665666677777777777774
No 17
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=96.88 E-value=0.00059 Score=47.95 Aligned_cols=20 Identities=25% Similarity=0.280 Sum_probs=18.6
Q ss_pred EEEEEEcCCCccHHHHHHHH
Q 035574 16 SVVAILDSIGLDKTAFTAEA 35 (156)
Q Consensus 16 ~vi~I~G~gGvGKTtLa~~v 35 (156)
.+|.|.|++|+||||+|+.+
T Consensus 2 ~~I~l~G~~GsGKsT~a~~L 21 (179)
T 3lw7_A 2 KVILITGMPGSGKSEFAKLL 21 (179)
T ss_dssp CEEEEECCTTSCHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHH
Confidence 37899999999999999999
No 18
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=96.81 E-value=0.0007 Score=47.81 Aligned_cols=22 Identities=9% Similarity=0.027 Sum_probs=20.1
Q ss_pred EEEEEEcCCCccHHHHHHHHhc
Q 035574 16 SVVAILDSIGLDKTAFTAEAYN 37 (156)
Q Consensus 16 ~vi~I~G~gGvGKTtLa~~vy~ 37 (156)
.+|.|.|+.|+||||+++.+..
T Consensus 2 ~~i~l~G~~GsGKsT~~~~L~~ 23 (173)
T 3kb2_A 2 TLIILEGPDCCFKSTVAAKLSK 23 (173)
T ss_dssp CEEEEECSSSSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4789999999999999999876
No 19
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=96.79 E-value=0.001 Score=48.66 Aligned_cols=23 Identities=13% Similarity=0.104 Sum_probs=20.6
Q ss_pred EEEEEEcCCCccHHHHHHHHhcc
Q 035574 16 SVVAILDSIGLDKTAFTAEAYNS 38 (156)
Q Consensus 16 ~vi~I~G~gGvGKTtLa~~vy~~ 38 (156)
..+-|+|.+|+||||||+.+++.
T Consensus 46 ~~~ll~G~~G~GKT~l~~~~~~~ 68 (250)
T 1njg_A 46 HAYLFSGTRGVGKTSIARLLAKG 68 (250)
T ss_dssp SEEEEECSTTSCHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 47889999999999999999873
No 20
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=96.76 E-value=0.00078 Score=48.11 Aligned_cols=22 Identities=5% Similarity=0.034 Sum_probs=20.1
Q ss_pred EEEEEEcCCCccHHHHHHHHhc
Q 035574 16 SVVAILDSIGLDKTAFTAEAYN 37 (156)
Q Consensus 16 ~vi~I~G~gGvGKTtLa~~vy~ 37 (156)
.+|-+.|++|+||||+|+.+.+
T Consensus 4 ~~i~l~G~~GsGKST~a~~La~ 25 (178)
T 1qhx_A 4 RMIILNGGSSAGKSGIVRCLQS 25 (178)
T ss_dssp CEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4788999999999999999977
No 21
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=96.72 E-value=0.002 Score=47.56 Aligned_cols=24 Identities=8% Similarity=0.158 Sum_probs=21.3
Q ss_pred CcEEEEEEcCCCccHHHHHHHHhc
Q 035574 14 QLSVVAILDSIGLDKTAFTAEAYN 37 (156)
Q Consensus 14 ~~~vi~I~G~gGvGKTtLa~~vy~ 37 (156)
..+.+-|+|.+|+||||||+.+++
T Consensus 51 ~~~~~ll~G~~G~GKT~la~~l~~ 74 (242)
T 3bos_A 51 GVQAIYLWGPVKSGRTHLIHAACA 74 (242)
T ss_dssp SCSEEEEECSTTSSHHHHHHHHHH
T ss_pred CCCeEEEECCCCCCHHHHHHHHHH
Confidence 456788999999999999999977
No 22
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=96.70 E-value=0.0022 Score=47.15 Aligned_cols=35 Identities=14% Similarity=0.013 Sum_probs=26.7
Q ss_pred HHHHHHhcC-CCCcEEEEEEcCCCccHHHHHHHHhc
Q 035574 3 ELLDLLIEG-PTQLSVVAILDSIGLDKTAFTAEAYN 37 (156)
Q Consensus 3 ~l~~~L~~~-~~~~~vi~I~G~gGvGKTtLa~~vy~ 37 (156)
++.+.+... .....+++|.|..|.|||||++.+..
T Consensus 9 ~l~~~~~~~~~~~~~~i~i~G~~GsGKstl~~~l~~ 44 (201)
T 1rz3_A 9 FLCKTILAIKTAGRLVLGIDGLSRSGKTTLANQLSQ 44 (201)
T ss_dssp HHHHHHHTSCCSSSEEEEEEECTTSSHHHHHHHHHH
T ss_pred HHHHHHHHhccCCCeEEEEECCCCCCHHHHHHHHHH
Confidence 344555442 34568999999999999999999876
No 23
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=96.70 E-value=0.0015 Score=46.26 Aligned_cols=23 Identities=22% Similarity=0.138 Sum_probs=20.2
Q ss_pred cEEEEEEcCCCccHHHHHHHHhc
Q 035574 15 LSVVAILDSIGLDKTAFTAEAYN 37 (156)
Q Consensus 15 ~~vi~I~G~gGvGKTtLa~~vy~ 37 (156)
...+-|+|.+|+|||+||+.+++
T Consensus 43 ~~~vll~G~~G~GKT~la~~~~~ 65 (187)
T 2p65_A 43 KNNPILLGDPGVGKTAIVEGLAI 65 (187)
T ss_dssp SCEEEEESCGGGCHHHHHHHHHH
T ss_pred CCceEEECCCCCCHHHHHHHHHH
Confidence 45567999999999999999987
No 24
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=96.69 E-value=0.0011 Score=47.15 Aligned_cols=22 Identities=14% Similarity=0.285 Sum_probs=20.2
Q ss_pred EEEEEEcCCCccHHHHHHHHhc
Q 035574 16 SVVAILDSIGLDKTAFTAEAYN 37 (156)
Q Consensus 16 ~vi~I~G~gGvGKTtLa~~vy~ 37 (156)
.+|.|.|++|+||||+|+.+..
T Consensus 3 ~~I~i~G~~GsGKST~a~~L~~ 24 (181)
T 1ly1_A 3 KIILTIGCPGSGKSTWAREFIA 24 (181)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEecCCCCCHHHHHHHHHh
Confidence 5789999999999999999976
No 25
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=96.69 E-value=0.0013 Score=47.43 Aligned_cols=25 Identities=12% Similarity=0.096 Sum_probs=22.0
Q ss_pred CcEEEEEEcCCCccHHHHHHHHhcc
Q 035574 14 QLSVVAILDSIGLDKTAFTAEAYNS 38 (156)
Q Consensus 14 ~~~vi~I~G~gGvGKTtLa~~vy~~ 38 (156)
.-.++.|+|+.|.|||||++.+...
T Consensus 8 ~g~~i~l~G~~GsGKSTl~~~La~~ 32 (191)
T 1zp6_A 8 GGNILLLSGHPGSGKSTIAEALANL 32 (191)
T ss_dssp TTEEEEEEECTTSCHHHHHHHHHTC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHhc
Confidence 3468999999999999999999873
No 26
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=96.65 E-value=0.0022 Score=50.46 Aligned_cols=26 Identities=15% Similarity=0.115 Sum_probs=22.7
Q ss_pred CCCcEEEEEEcCCCccHHHHHHHHhc
Q 035574 12 PTQLSVVAILDSIGLDKTAFTAEAYN 37 (156)
Q Consensus 12 ~~~~~vi~I~G~gGvGKTtLa~~vy~ 37 (156)
.....+|+|+|..|+||||||+.+..
T Consensus 28 ~~~~~ii~I~G~sGsGKSTla~~L~~ 53 (290)
T 1odf_A 28 NKCPLFIFFSGPQGSGKSFTSIQIYN 53 (290)
T ss_dssp CCSCEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHH
Confidence 45678999999999999999998765
No 27
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=96.64 E-value=0.0012 Score=47.28 Aligned_cols=22 Identities=14% Similarity=0.179 Sum_probs=20.2
Q ss_pred EEEEEEcCCCccHHHHHHHHhc
Q 035574 16 SVVAILDSIGLDKTAFTAEAYN 37 (156)
Q Consensus 16 ~vi~I~G~gGvGKTtLa~~vy~ 37 (156)
..|.|.|+.|+||||+++.+..
T Consensus 2 ~~I~i~G~~GsGKsT~~~~L~~ 23 (194)
T 1nks_A 2 KIGIVTGIPGVGKSTVLAKVKE 23 (194)
T ss_dssp EEEEEEECTTSCHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 5789999999999999999977
No 28
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=96.64 E-value=0.0011 Score=48.57 Aligned_cols=24 Identities=13% Similarity=0.151 Sum_probs=21.4
Q ss_pred CcEEEEEEcCCCccHHHHHHHHhc
Q 035574 14 QLSVVAILDSIGLDKTAFTAEAYN 37 (156)
Q Consensus 14 ~~~vi~I~G~gGvGKTtLa~~vy~ 37 (156)
....|.|+|+.|+||||+++.+..
T Consensus 24 ~~~~i~l~G~~GsGKsTl~~~La~ 47 (199)
T 3vaa_A 24 AMVRIFLTGYMGAGKTTLGKAFAR 47 (199)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHH
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHH
Confidence 356899999999999999999976
No 29
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=96.57 E-value=0.0011 Score=47.76 Aligned_cols=24 Identities=17% Similarity=0.223 Sum_probs=21.6
Q ss_pred cEEEEEEcCCCccHHHHHHHHhcc
Q 035574 15 LSVVAILDSIGLDKTAFTAEAYNS 38 (156)
Q Consensus 15 ~~vi~I~G~gGvGKTtLa~~vy~~ 38 (156)
-..+.++|..|+|||||++.+++.
T Consensus 38 g~~~~l~G~~G~GKTtL~~~i~~~ 61 (180)
T 3ec2_A 38 GKGLTFVGSPGVGKTHLAVATLKA 61 (180)
T ss_dssp CCEEEECCSSSSSHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHH
Confidence 468899999999999999999883
No 30
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=96.49 E-value=0.0012 Score=46.88 Aligned_cols=22 Identities=9% Similarity=0.231 Sum_probs=20.2
Q ss_pred EEEEEEcCCCccHHHHHHHHhc
Q 035574 16 SVVAILDSIGLDKTAFTAEAYN 37 (156)
Q Consensus 16 ~vi~I~G~gGvGKTtLa~~vy~ 37 (156)
.+|.|+|+.|.|||||++.+..
T Consensus 5 ~~i~l~G~~GsGKSTl~~~La~ 26 (173)
T 1kag_A 5 RNIFLVGPMGAGKSTIGRQLAQ 26 (173)
T ss_dssp CCEEEECCTTSCHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHH
Confidence 4689999999999999999977
No 31
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=96.49 E-value=0.002 Score=46.40 Aligned_cols=23 Identities=9% Similarity=0.118 Sum_probs=20.8
Q ss_pred cEEEEEEcCCCccHHHHHHHHhc
Q 035574 15 LSVVAILDSIGLDKTAFTAEAYN 37 (156)
Q Consensus 15 ~~vi~I~G~gGvGKTtLa~~vy~ 37 (156)
..+|.|.|+.|+||||+++.+..
T Consensus 5 ~~~I~l~G~~GsGKST~~~~L~~ 27 (193)
T 2rhm_A 5 PALIIVTGHPATGKTTLSQALAT 27 (193)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 46889999999999999999876
No 32
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=96.48 E-value=0.0076 Score=44.07 Aligned_cols=46 Identities=9% Similarity=0.130 Sum_probs=33.6
Q ss_pred CCcEEEEEEcCCCccHHHHHHHHhccccccccCceEEEEEcCCCCCHHHHH
Q 035574 13 TQLSVVAILDSIGLDKTAFTAEAYNSSYMKHYFDYLAWIPAPYHYDPDQIL 63 (156)
Q Consensus 13 ~~~~vi~I~G~gGvGKTtLa~~vy~~~~v~~~F~~~~wv~vs~~~~~~~l~ 63 (156)
..-.++.|+|.+|.|||||+..+.. . .-...+|+.....++...+.
T Consensus 18 ~~G~~~~i~G~~GsGKTtl~~~l~~-~----~~~~v~~i~~~~~~~~~~~~ 63 (220)
T 2cvh_A 18 APGVLTQVYGPYASGKTTLALQTGL-L----SGKKVAYVDTEGGFSPERLV 63 (220)
T ss_dssp CTTSEEEEECSTTSSHHHHHHHHHH-H----HCSEEEEEESSCCCCHHHHH
T ss_pred cCCEEEEEECCCCCCHHHHHHHHHH-H----cCCcEEEEECCCCCCHHHHH
Confidence 4456899999999999999999876 1 12357777776655665544
No 33
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=96.45 E-value=0.0027 Score=45.25 Aligned_cols=24 Identities=17% Similarity=0.279 Sum_probs=21.3
Q ss_pred CcEEEEEEcCCCccHHHHHHHHhc
Q 035574 14 QLSVVAILDSIGLDKTAFTAEAYN 37 (156)
Q Consensus 14 ~~~vi~I~G~gGvGKTtLa~~vy~ 37 (156)
...++.|+|+.|.||||+++.+..
T Consensus 7 ~g~~i~l~G~~GsGKSTl~~~l~~ 30 (175)
T 1knq_A 7 DHHIYVLMGVSGSGKSAVASEVAH 30 (175)
T ss_dssp TSEEEEEECSTTSCHHHHHHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHH
Confidence 357899999999999999999865
No 34
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=96.44 E-value=0.0015 Score=46.89 Aligned_cols=23 Identities=17% Similarity=0.317 Sum_probs=20.5
Q ss_pred cEEEEEEcCCCccHHHHHHHHhc
Q 035574 15 LSVVAILDSIGLDKTAFTAEAYN 37 (156)
Q Consensus 15 ~~vi~I~G~gGvGKTtLa~~vy~ 37 (156)
...|.++|+.|+||||+|+.+..
T Consensus 5 ~~~i~l~G~~GsGKst~a~~La~ 27 (185)
T 3trf_A 5 LTNIYLIGLMGAGKTSVGSQLAK 27 (185)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHH
Confidence 45788999999999999999976
No 35
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=96.44 E-value=0.0018 Score=46.40 Aligned_cols=22 Identities=23% Similarity=0.261 Sum_probs=20.1
Q ss_pred EEEEEEcCCCccHHHHHHHHhc
Q 035574 16 SVVAILDSIGLDKTAFTAEAYN 37 (156)
Q Consensus 16 ~vi~I~G~gGvGKTtLa~~vy~ 37 (156)
..|.|.|+.|+||||+++.+..
T Consensus 4 ~~I~i~G~~GsGKsT~~~~L~~ 25 (192)
T 1kht_A 4 KVVVVTGVPGVGSTTSSQLAMD 25 (192)
T ss_dssp CEEEEECCTTSCHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4789999999999999999876
No 36
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=96.43 E-value=0.0018 Score=46.90 Aligned_cols=21 Identities=29% Similarity=0.507 Sum_probs=19.4
Q ss_pred EEEEEcCCCccHHHHHHHHhc
Q 035574 17 VVAILDSIGLDKTAFTAEAYN 37 (156)
Q Consensus 17 vi~I~G~gGvGKTtLa~~vy~ 37 (156)
.|.|.|+.|+||||+++.+..
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~ 22 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISK 22 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEECCCccCHHHHHHHHHH
Confidence 588999999999999999977
No 37
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=96.40 E-value=0.0018 Score=46.77 Aligned_cols=23 Identities=9% Similarity=0.221 Sum_probs=20.8
Q ss_pred cEEEEEEcCCCccHHHHHHHHhc
Q 035574 15 LSVVAILDSIGLDKTAFTAEAYN 37 (156)
Q Consensus 15 ~~vi~I~G~gGvGKTtLa~~vy~ 37 (156)
-+++.|+|..|+|||||++.+..
T Consensus 5 g~~i~i~GpsGsGKSTL~~~L~~ 27 (180)
T 1kgd_A 5 RKTLVLLGAHGVGRRHIKNTLIT 27 (180)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHh
Confidence 36899999999999999999876
No 38
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=96.39 E-value=0.0024 Score=46.78 Aligned_cols=24 Identities=13% Similarity=0.130 Sum_probs=21.7
Q ss_pred CcEEEEEEcCCCccHHHHHHHHhc
Q 035574 14 QLSVVAILDSIGLDKTAFTAEAYN 37 (156)
Q Consensus 14 ~~~vi~I~G~gGvGKTtLa~~vy~ 37 (156)
...+|.|+|+.|.|||||++.+..
T Consensus 24 ~g~~i~l~G~sGsGKSTl~~~La~ 47 (200)
T 3uie_A 24 KGCVIWVTGLSGSGKSTLACALNQ 47 (200)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 357899999999999999999877
No 39
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=96.39 E-value=0.0025 Score=46.22 Aligned_cols=25 Identities=20% Similarity=0.264 Sum_probs=22.1
Q ss_pred CCcEEEEEEcCCCccHHHHHHHHhc
Q 035574 13 TQLSVVAILDSIGLDKTAFTAEAYN 37 (156)
Q Consensus 13 ~~~~vi~I~G~gGvGKTtLa~~vy~ 37 (156)
....+|.|.|+.|.||||+++.+..
T Consensus 6 ~~~~~I~i~G~~GsGKST~~~~La~ 30 (203)
T 1uf9_A 6 KHPIIIGITGNIGSGKSTVAALLRS 30 (203)
T ss_dssp CCCEEEEEEECTTSCHHHHHHHHHH
T ss_pred cCceEEEEECCCCCCHHHHHHHHHH
Confidence 4567899999999999999999866
No 40
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=96.38 E-value=0.0027 Score=46.35 Aligned_cols=25 Identities=24% Similarity=0.278 Sum_probs=22.2
Q ss_pred CCcEEEEEEcCCCccHHHHHHHHhc
Q 035574 13 TQLSVVAILDSIGLDKTAFTAEAYN 37 (156)
Q Consensus 13 ~~~~vi~I~G~gGvGKTtLa~~vy~ 37 (156)
....+|.|.|+.|+||||+++.+..
T Consensus 13 ~~~~~I~l~G~~GsGKsT~~~~L~~ 37 (203)
T 1ukz_A 13 DQVSVIFVLGGPGAGKGTQCEKLVK 37 (203)
T ss_dssp TTCEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHH
Confidence 4567899999999999999999876
No 41
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=96.37 E-value=0.0015 Score=47.84 Aligned_cols=23 Identities=9% Similarity=0.159 Sum_probs=20.7
Q ss_pred cEEEEEEcCCCccHHHHHHHHhc
Q 035574 15 LSVVAILDSIGLDKTAFTAEAYN 37 (156)
Q Consensus 15 ~~vi~I~G~gGvGKTtLa~~vy~ 37 (156)
..+|.|.|..|.||||+|+.+..
T Consensus 18 ~~~I~l~G~~GsGKSTla~~L~~ 40 (202)
T 3t61_A 18 PGSIVVMGVSGSGKSSVGEAIAE 40 (202)
T ss_dssp SSCEEEECSTTSCHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 45899999999999999999876
No 42
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=96.37 E-value=0.002 Score=45.66 Aligned_cols=25 Identities=12% Similarity=0.234 Sum_probs=20.6
Q ss_pred CCcEEEEEEcCCCccHHHHHHHHhc
Q 035574 13 TQLSVVAILDSIGLDKTAFTAEAYN 37 (156)
Q Consensus 13 ~~~~vi~I~G~gGvGKTtLa~~vy~ 37 (156)
..+..|.|.|+.|+||||+++.+..
T Consensus 5 ~~~~~i~l~G~~GsGKSTva~~La~ 29 (168)
T 1zuh_A 5 HHMQHLVLIGFMGSGKSSLAQELGL 29 (168)
T ss_dssp ---CEEEEESCTTSSHHHHHHHHHH
T ss_pred cccceEEEECCCCCCHHHHHHHHHH
Confidence 3567899999999999999999876
No 43
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=96.32 E-value=0.0022 Score=46.88 Aligned_cols=22 Identities=14% Similarity=0.214 Sum_probs=19.7
Q ss_pred EEEEEEcCCCccHHHHHHHHhc
Q 035574 16 SVVAILDSIGLDKTAFTAEAYN 37 (156)
Q Consensus 16 ~vi~I~G~gGvGKTtLa~~vy~ 37 (156)
.+|.|.|+.|+||||+++.+..
T Consensus 2 ~~i~i~G~~GsGKSTl~~~L~~ 23 (204)
T 2if2_A 2 KRIGLTGNIGCGKSTVAQMFRE 23 (204)
T ss_dssp CEEEEEECTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCcCHHHHHHHHHH
Confidence 4689999999999999999865
No 44
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=96.31 E-value=0.0026 Score=45.63 Aligned_cols=23 Identities=26% Similarity=0.176 Sum_probs=20.4
Q ss_pred cEEEEEEcCCCccHHHHHHHHhc
Q 035574 15 LSVVAILDSIGLDKTAFTAEAYN 37 (156)
Q Consensus 15 ~~vi~I~G~gGvGKTtLa~~vy~ 37 (156)
..+|.|.|+.|+||||+|+.+..
T Consensus 3 ~~~I~l~G~~GsGKsT~a~~L~~ 25 (196)
T 1tev_A 3 PLVVFVLGGPGAGKGTQCARIVE 25 (196)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHH
Confidence 35789999999999999998866
No 45
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=96.30 E-value=0.0025 Score=45.93 Aligned_cols=23 Identities=9% Similarity=0.154 Sum_probs=20.8
Q ss_pred cEEEEEEcCCCccHHHHHHHHhc
Q 035574 15 LSVVAILDSIGLDKTAFTAEAYN 37 (156)
Q Consensus 15 ~~vi~I~G~gGvGKTtLa~~vy~ 37 (156)
..+|.|.|+.|+||||+++.+..
T Consensus 9 ~~~I~l~G~~GsGKsT~~~~La~ 31 (196)
T 2c95_A 9 TNIIFVVGGPGSGKGTQCEKIVQ 31 (196)
T ss_dssp SCEEEEEECTTSSHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHH
Confidence 46899999999999999999876
No 46
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=96.30 E-value=0.0028 Score=45.77 Aligned_cols=22 Identities=14% Similarity=0.151 Sum_probs=19.9
Q ss_pred EEEEEEcCCCccHHHHHHHHhc
Q 035574 16 SVVAILDSIGLDKTAFTAEAYN 37 (156)
Q Consensus 16 ~vi~I~G~gGvGKTtLa~~vy~ 37 (156)
.++.|+|..|.|||||++.+..
T Consensus 3 ~ii~l~G~~GaGKSTl~~~L~~ 24 (189)
T 2bdt_A 3 KLYIITGPAGVGKSTTCKRLAA 24 (189)
T ss_dssp EEEEEECSTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCcHHHHHHHHhc
Confidence 4789999999999999999975
No 47
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=96.30 E-value=0.0023 Score=46.95 Aligned_cols=23 Identities=17% Similarity=0.208 Sum_probs=20.9
Q ss_pred cEEEEEEcCCCccHHHHHHHHhc
Q 035574 15 LSVVAILDSIGLDKTAFTAEAYN 37 (156)
Q Consensus 15 ~~vi~I~G~gGvGKTtLa~~vy~ 37 (156)
..++.|+|+.|.|||||++.+..
T Consensus 29 g~~i~l~G~~GsGKSTl~~~L~~ 51 (200)
T 4eun_A 29 TRHVVVMGVSGSGKTTIAHGVAD 51 (200)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 46899999999999999999876
No 48
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=96.28 E-value=0.003 Score=46.37 Aligned_cols=25 Identities=12% Similarity=0.158 Sum_probs=22.2
Q ss_pred CCcEEEEEEcCCCccHHHHHHHHhc
Q 035574 13 TQLSVVAILDSIGLDKTAFTAEAYN 37 (156)
Q Consensus 13 ~~~~vi~I~G~gGvGKTtLa~~vy~ 37 (156)
....+|.|+|..|.||||+++.+..
T Consensus 19 ~~~~~i~i~G~~GsGKSTl~~~L~~ 43 (207)
T 2qt1_A 19 SKTFIIGISGVTNSGKTTLAKNLQK 43 (207)
T ss_dssp CCCEEEEEEESTTSSHHHHHHHHHT
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHH
Confidence 3457899999999999999999976
No 49
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=96.27 E-value=0.0029 Score=45.42 Aligned_cols=23 Identities=30% Similarity=0.595 Sum_probs=19.9
Q ss_pred cEEEEEEcCCCccHHHHHHHHhc
Q 035574 15 LSVVAILDSIGLDKTAFTAEAYN 37 (156)
Q Consensus 15 ~~vi~I~G~gGvGKTtLa~~vy~ 37 (156)
-.++.|+|..|.|||||++.++.
T Consensus 9 gei~~l~G~nGsGKSTl~~~~~~ 31 (171)
T 4gp7_A 9 LSLVVLIGSSGSGKSTFAKKHFK 31 (171)
T ss_dssp SEEEEEECCTTSCHHHHHHHHSC
T ss_pred CEEEEEECCCCCCHHHHHHHHcc
Confidence 46899999999999999997553
No 50
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=96.26 E-value=0.0027 Score=46.15 Aligned_cols=23 Identities=17% Similarity=0.193 Sum_probs=20.7
Q ss_pred cEEEEEEcCCCccHHHHHHHHhc
Q 035574 15 LSVVAILDSIGLDKTAFTAEAYN 37 (156)
Q Consensus 15 ~~vi~I~G~gGvGKTtLa~~vy~ 37 (156)
-.+++|+|..|.|||||++.+..
T Consensus 7 g~ii~l~Gp~GsGKSTl~~~L~~ 29 (205)
T 3tr0_A 7 ANLFIISAPSGAGKTSLVRALVK 29 (205)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHH
T ss_pred CcEEEEECcCCCCHHHHHHHHHh
Confidence 35899999999999999999876
No 51
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=96.25 E-value=0.0029 Score=46.02 Aligned_cols=23 Identities=9% Similarity=0.208 Sum_probs=20.7
Q ss_pred cEEEEEEcCCCccHHHHHHHHhc
Q 035574 15 LSVVAILDSIGLDKTAFTAEAYN 37 (156)
Q Consensus 15 ~~vi~I~G~gGvGKTtLa~~vy~ 37 (156)
..++.|+|..|.|||||++.+..
T Consensus 6 g~~i~l~G~~GsGKSTl~~~L~~ 28 (207)
T 2j41_A 6 GLLIVLSGPSGVGKGTVRKRIFE 28 (207)
T ss_dssp CCEEEEECSTTSCHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHH
Confidence 35899999999999999999876
No 52
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=96.25 E-value=0.0022 Score=46.02 Aligned_cols=23 Identities=22% Similarity=0.306 Sum_probs=20.3
Q ss_pred cEEEEEEcCCCccHHHHHHHHhc
Q 035574 15 LSVVAILDSIGLDKTAFTAEAYN 37 (156)
Q Consensus 15 ~~vi~I~G~gGvGKTtLa~~vy~ 37 (156)
...|.|+|+.|+||||+++.+..
T Consensus 11 ~~~i~i~G~~GsGKst~~~~l~~ 33 (180)
T 3iij_A 11 LPNILLTGTPGVGKTTLGKELAS 33 (180)
T ss_dssp CCCEEEECSTTSSHHHHHHHHHH
T ss_pred CCeEEEEeCCCCCHHHHHHHHHH
Confidence 45688999999999999999875
No 53
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=96.25 E-value=0.0031 Score=46.29 Aligned_cols=24 Identities=17% Similarity=0.144 Sum_probs=21.5
Q ss_pred CcEEEEEEcCCCccHHHHHHHHhc
Q 035574 14 QLSVVAILDSIGLDKTAFTAEAYN 37 (156)
Q Consensus 14 ~~~vi~I~G~gGvGKTtLa~~vy~ 37 (156)
...+++|+|..|.|||||++.+..
T Consensus 5 ~~~~i~i~G~~GsGKSTl~~~l~~ 28 (211)
T 3asz_A 5 KPFVIGIAGGTASGKTTLAQALAR 28 (211)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHH
T ss_pred CcEEEEEECCCCCCHHHHHHHHHH
Confidence 357899999999999999999876
No 54
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=96.24 E-value=0.0029 Score=48.49 Aligned_cols=23 Identities=13% Similarity=0.329 Sum_probs=20.9
Q ss_pred cEEEEEEcCCCccHHHHHHHHhc
Q 035574 15 LSVVAILDSIGLDKTAFTAEAYN 37 (156)
Q Consensus 15 ~~vi~I~G~gGvGKTtLa~~vy~ 37 (156)
..+|.|+|++|+||||+|+.+..
T Consensus 4 ~~lIvl~G~pGSGKSTla~~La~ 26 (260)
T 3a4m_A 4 IMLIILTGLPGVGKSTFSKNLAK 26 (260)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHH
T ss_pred CEEEEEEcCCCCCHHHHHHHHHH
Confidence 46899999999999999999876
No 55
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=96.24 E-value=0.002 Score=46.03 Aligned_cols=22 Identities=9% Similarity=0.214 Sum_probs=19.8
Q ss_pred EEEEEEcCCCccHHHHHHHHhc
Q 035574 16 SVVAILDSIGLDKTAFTAEAYN 37 (156)
Q Consensus 16 ~vi~I~G~gGvGKTtLa~~vy~ 37 (156)
..|.|.|++|.||||+|+.+..
T Consensus 5 ~~i~i~G~~GsGKsTla~~La~ 26 (175)
T 1via_A 5 KNIVFIGFMGSGKSTLARALAK 26 (175)
T ss_dssp CCEEEECCTTSCHHHHHHHHHH
T ss_pred CEEEEEcCCCCCHHHHHHHHHH
Confidence 3589999999999999999876
No 56
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=96.24 E-value=0.003 Score=45.59 Aligned_cols=24 Identities=21% Similarity=0.109 Sum_probs=21.6
Q ss_pred CcEEEEEEcCCCccHHHHHHHHhc
Q 035574 14 QLSVVAILDSIGLDKTAFTAEAYN 37 (156)
Q Consensus 14 ~~~vi~I~G~gGvGKTtLa~~vy~ 37 (156)
...+|.++|+.|.||||+++.+..
T Consensus 12 ~~~~i~l~G~~GsGKsT~~~~L~~ 35 (186)
T 2yvu_A 12 KGIVVWLTGLPGSGKTTIATRLAD 35 (186)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHH
Confidence 457899999999999999999877
No 57
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=96.23 E-value=0.003 Score=45.99 Aligned_cols=22 Identities=14% Similarity=0.065 Sum_probs=20.4
Q ss_pred EEEEEEcCCCccHHHHHHHHhc
Q 035574 16 SVVAILDSIGLDKTAFTAEAYN 37 (156)
Q Consensus 16 ~vi~I~G~gGvGKTtLa~~vy~ 37 (156)
..|.|.|+.|+||||+++.+..
T Consensus 5 ~~I~i~G~~GsGKsT~~~~L~~ 26 (213)
T 2plr_A 5 VLIAFEGIDGSGKSSQATLLKD 26 (213)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEEcCCCCCHHHHHHHHHH
Confidence 5789999999999999999977
No 58
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=96.23 E-value=0.016 Score=42.99 Aligned_cols=50 Identities=10% Similarity=0.100 Sum_probs=34.5
Q ss_pred CCcEEEEEEcCCCccHHHHHHHHhccccccc----cCceEEEEEcCCCCCHHHH
Q 035574 13 TQLSVVAILDSIGLDKTAFTAEAYNSSYMKH----YFDYLAWIPAPYHYDPDQI 62 (156)
Q Consensus 13 ~~~~vi~I~G~gGvGKTtLa~~vy~~~~v~~----~F~~~~wv~vs~~~~~~~l 62 (156)
..-.++.|+|.+|.|||||+..+........ .-...+|+.....++..++
T Consensus 22 ~~G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~g~~~~~~~~i~~~~~~~~~~~ 75 (243)
T 1n0w_A 22 ETGSITEMFGEFRTGKTQICHTLAVTCQLPIDRGGGEGKAMYIDTEGTFRPERL 75 (243)
T ss_dssp ETTSEEEEECCTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSSCCCHHHH
T ss_pred cCCeEEEEECCCCCcHHHHHHHHHHHHhCchhcCCCCCeEEEEECCCCcCHHHH
Confidence 3456899999999999999999876321211 1245788877666555544
No 59
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=96.22 E-value=0.003 Score=48.44 Aligned_cols=22 Identities=14% Similarity=0.042 Sum_probs=19.8
Q ss_pred EEEEEEcCCCccHHHHHHHHhc
Q 035574 16 SVVAILDSIGLDKTAFTAEAYN 37 (156)
Q Consensus 16 ~vi~I~G~gGvGKTtLa~~vy~ 37 (156)
.++.|+|+.|+||||||+.+..
T Consensus 2 ~li~I~G~~GSGKSTla~~La~ 23 (253)
T 2ze6_A 2 LLHLIYGPTCSGKTDMAIQIAQ 23 (253)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCcCHHHHHHHHHh
Confidence 5789999999999999999865
No 60
>3fwy_A Light-independent protochlorophyllide reductase I ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2}
Probab=96.21 E-value=0.003 Score=50.23 Aligned_cols=23 Identities=22% Similarity=0.291 Sum_probs=19.0
Q ss_pred CCcEEEEEEcCCCccHHHHHHHH
Q 035574 13 TQLSVVAILDSIGLDKTAFTAEA 35 (156)
Q Consensus 13 ~~~~vi~I~G~gGvGKTtLa~~v 35 (156)
.+.+||+|.|-|||||||.+-.+
T Consensus 46 ~~aKVIAIaGKGGVGKTTtavNL 68 (314)
T 3fwy_A 46 TGAKVFAVYGKGGIGKSTTSSNL 68 (314)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHH
T ss_pred CCceEEEEECCCccCHHHHHHHH
Confidence 45789999999999999966654
No 61
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=96.18 E-value=0.0033 Score=44.96 Aligned_cols=23 Identities=26% Similarity=0.205 Sum_probs=20.8
Q ss_pred cEEEEEEcCCCccHHHHHHHHhc
Q 035574 15 LSVVAILDSIGLDKTAFTAEAYN 37 (156)
Q Consensus 15 ~~vi~I~G~gGvGKTtLa~~vy~ 37 (156)
..+|.|.|+.|+||||+++.+..
T Consensus 6 ~~~I~l~G~~GsGKsT~~~~L~~ 28 (194)
T 1qf9_A 6 PNVVFVLGGPGSGKGTQCANIVR 28 (194)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 46899999999999999999876
No 62
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=96.18 E-value=0.0034 Score=45.00 Aligned_cols=22 Identities=18% Similarity=0.166 Sum_probs=20.0
Q ss_pred EEEEEEcCCCccHHHHHHHHhc
Q 035574 16 SVVAILDSIGLDKTAFTAEAYN 37 (156)
Q Consensus 16 ~vi~I~G~gGvGKTtLa~~vy~ 37 (156)
..|.+.|+.|+||||+++.+.+
T Consensus 5 ~~I~l~G~~GsGKST~~~~La~ 26 (186)
T 3cm0_A 5 QAVIFLGPPGAGKGTQASRLAQ 26 (186)
T ss_dssp EEEEEECCTTSCHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 5789999999999999999876
No 63
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=96.17 E-value=0.0026 Score=46.80 Aligned_cols=24 Identities=8% Similarity=0.272 Sum_probs=21.3
Q ss_pred CcEEEEEEcCCCccHHHHHHHHhc
Q 035574 14 QLSVVAILDSIGLDKTAFTAEAYN 37 (156)
Q Consensus 14 ~~~vi~I~G~gGvGKTtLa~~vy~ 37 (156)
...+|.|+|+.|+|||||++.+..
T Consensus 11 ~~~~i~l~G~sGsGKsTl~~~L~~ 34 (204)
T 2qor_A 11 RIPPLVVCGPSGVGKGTLIKKVLS 34 (204)
T ss_dssp CCCCEEEECCTTSCHHHHHHHHHH
T ss_pred cCCEEEEECCCCCCHHHHHHHHHH
Confidence 356889999999999999999876
No 64
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=96.15 E-value=0.0059 Score=49.02 Aligned_cols=33 Identities=18% Similarity=0.077 Sum_probs=25.1
Q ss_pred HHHHhcCCCCcEEEEEEcCCCccHHHHHHHHhc
Q 035574 5 LDLLIEGPTQLSVVAILDSIGLDKTAFTAEAYN 37 (156)
Q Consensus 5 ~~~L~~~~~~~~vi~I~G~gGvGKTtLa~~vy~ 37 (156)
+..+........+|.|+|.+|+|||||+..+..
T Consensus 69 ~~~~~~~~~~~~~I~i~G~~G~GKSTl~~~L~~ 101 (355)
T 3p32_A 69 LLRLLPDSGNAHRVGITGVPGVGKSTAIEALGM 101 (355)
T ss_dssp HHHHGGGCCCSEEEEEECCTTSSHHHHHHHHHH
T ss_pred HHHhHhhcCCceEEEEECCCCCCHHHHHHHHHH
Confidence 333333345678999999999999999988754
No 65
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=96.15 E-value=0.0031 Score=46.66 Aligned_cols=22 Identities=18% Similarity=0.206 Sum_probs=19.5
Q ss_pred EEEEEEcCCCccHHHHHHHHhc
Q 035574 16 SVVAILDSIGLDKTAFTAEAYN 37 (156)
Q Consensus 16 ~vi~I~G~gGvGKTtLa~~vy~ 37 (156)
.+|.|+|..|.||||+++.+..
T Consensus 6 ~~i~i~G~~GsGKSTl~~~L~~ 27 (227)
T 1cke_A 6 PVITIDGPSGAGKGTLCKAMAE 27 (227)
T ss_dssp CEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4799999999999999998754
No 66
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=96.15 E-value=0.0025 Score=45.13 Aligned_cols=22 Identities=14% Similarity=0.125 Sum_probs=19.9
Q ss_pred EEEEEEcCCCccHHHHHHHHhc
Q 035574 16 SVVAILDSIGLDKTAFTAEAYN 37 (156)
Q Consensus 16 ~vi~I~G~gGvGKTtLa~~vy~ 37 (156)
..|.|.|+.|+||||+|+.+..
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~ 24 (173)
T 1e6c_A 3 EPIFMVGARGCGMTTVGRELAR 24 (173)
T ss_dssp CCEEEESCTTSSHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHH
Confidence 4689999999999999999876
No 67
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=96.15 E-value=0.0037 Score=45.72 Aligned_cols=22 Identities=23% Similarity=0.282 Sum_probs=20.0
Q ss_pred EEEEEEcCCCccHHHHHHHHhc
Q 035574 16 SVVAILDSIGLDKTAFTAEAYN 37 (156)
Q Consensus 16 ~vi~I~G~gGvGKTtLa~~vy~ 37 (156)
.+|+|.|+.|.||||+++.+..
T Consensus 3 ~~i~l~G~~GsGKST~~~~La~ 24 (206)
T 1jjv_A 3 YIVGLTGGIGSGKTTIANLFTD 24 (206)
T ss_dssp EEEEEECSTTSCHHHHHHHHHT
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 4789999999999999999865
No 68
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=96.14 E-value=0.0026 Score=44.35 Aligned_cols=22 Identities=9% Similarity=-0.058 Sum_probs=19.7
Q ss_pred EEEEEcCCCccHHHHHHHHhcc
Q 035574 17 VVAILDSIGLDKTAFTAEAYNS 38 (156)
Q Consensus 17 vi~I~G~gGvGKTtLa~~vy~~ 38 (156)
-+-|+|..|+|||++|+.+++.
T Consensus 26 ~vll~G~~GtGKt~lA~~i~~~ 47 (145)
T 3n70_A 26 AVWLYGAPGTGRMTGARYLHQF 47 (145)
T ss_dssp CEEEESSTTSSHHHHHHHHHHS
T ss_pred CEEEECCCCCCHHHHHHHHHHh
Confidence 3679999999999999999884
No 69
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=96.12 E-value=0.0033 Score=45.40 Aligned_cols=23 Identities=13% Similarity=0.164 Sum_probs=20.7
Q ss_pred cEEEEEEcCCCccHHHHHHHHhc
Q 035574 15 LSVVAILDSIGLDKTAFTAEAYN 37 (156)
Q Consensus 15 ~~vi~I~G~gGvGKTtLa~~vy~ 37 (156)
..+|.|.|+.|+||||+|+.+..
T Consensus 12 ~~~I~l~G~~GsGKsT~a~~L~~ 34 (199)
T 2bwj_A 12 CKIIFIIGGPGSGKGTQCEKLVE 34 (199)
T ss_dssp SCEEEEEECTTSSHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHH
Confidence 35899999999999999999876
No 70
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=96.12 E-value=0.0037 Score=45.22 Aligned_cols=24 Identities=17% Similarity=0.083 Sum_probs=21.0
Q ss_pred CcEEEEEEcCCCccHHHHHHHHhc
Q 035574 14 QLSVVAILDSIGLDKTAFTAEAYN 37 (156)
Q Consensus 14 ~~~vi~I~G~gGvGKTtLa~~vy~ 37 (156)
....|.|+|+.|+||||+++.+.+
T Consensus 9 ~~~~I~l~G~~GsGKSTv~~~La~ 32 (184)
T 1y63_A 9 KGINILITGTPGTGKTSMAEMIAA 32 (184)
T ss_dssp SSCEEEEECSTTSSHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHH
Confidence 346799999999999999998876
No 71
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=96.12 E-value=0.0034 Score=45.01 Aligned_cols=21 Identities=24% Similarity=0.275 Sum_probs=19.5
Q ss_pred EEEEEcCCCccHHHHHHHHhc
Q 035574 17 VVAILDSIGLDKTAFTAEAYN 37 (156)
Q Consensus 17 vi~I~G~gGvGKTtLa~~vy~ 37 (156)
+|.|.|+.|+||||+++.+.+
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~ 22 (195)
T 2pbr_A 2 LIAFEGIDGSGKTTQAKKLYE 22 (195)
T ss_dssp EEEEECSTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 588999999999999999977
No 72
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=96.11 E-value=0.006 Score=45.92 Aligned_cols=23 Identities=17% Similarity=0.124 Sum_probs=20.4
Q ss_pred cEEEEEEcCCCccHHHHHHHHhc
Q 035574 15 LSVVAILDSIGLDKTAFTAEAYN 37 (156)
Q Consensus 15 ~~vi~I~G~gGvGKTtLa~~vy~ 37 (156)
.+-+-++|.+|+|||+||+.+++
T Consensus 39 ~~~vll~G~~GtGKT~la~~la~ 61 (262)
T 2qz4_A 39 PKGALLLGPPGCGKTLLAKAVAT 61 (262)
T ss_dssp CCEEEEESCTTSSHHHHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHHHHH
Confidence 45577999999999999999987
No 73
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=96.10 E-value=0.0088 Score=46.19 Aligned_cols=20 Identities=20% Similarity=0.099 Sum_probs=19.0
Q ss_pred EEEEcCCCccHHHHHHHHhc
Q 035574 18 VAILDSIGLDKTAFTAEAYN 37 (156)
Q Consensus 18 i~I~G~gGvGKTtLa~~vy~ 37 (156)
+-++|.+|+|||++|+.+++
T Consensus 45 ~ll~G~~G~GKt~la~~l~~ 64 (323)
T 1sxj_B 45 MIISGMPGIGKTTSVHCLAH 64 (323)
T ss_dssp EEEECSTTSSHHHHHHHHHH
T ss_pred EEEECcCCCCHHHHHHHHHH
Confidence 88999999999999999987
No 74
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=96.09 E-value=0.0037 Score=44.06 Aligned_cols=21 Identities=5% Similarity=0.004 Sum_probs=19.2
Q ss_pred EEEEEcCCCccHHHHHHHHhc
Q 035574 17 VVAILDSIGLDKTAFTAEAYN 37 (156)
Q Consensus 17 vi~I~G~gGvGKTtLa~~vy~ 37 (156)
.|.|.|+.|+||||+|+.+.+
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~ 22 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVGSLLSR 22 (168)
T ss_dssp EEEEESCTTSCHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHH
Confidence 578999999999999999876
No 75
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=96.06 E-value=0.0047 Score=48.45 Aligned_cols=24 Identities=29% Similarity=0.289 Sum_probs=21.5
Q ss_pred CcEEEEEEcCCCccHHHHHHHHhc
Q 035574 14 QLSVVAILDSIGLDKTAFTAEAYN 37 (156)
Q Consensus 14 ~~~vi~I~G~gGvGKTtLa~~vy~ 37 (156)
....+-|+|.+|+||||||+.+++
T Consensus 36 ~~~~lll~G~~GtGKT~la~~i~~ 59 (324)
T 1l8q_A 36 LYNPIFIYGSVGTGKTHLLQAAGN 59 (324)
T ss_dssp SCSSEEEECSSSSSHHHHHHHHHH
T ss_pred CCCeEEEECCCCCcHHHHHHHHHH
Confidence 456788999999999999999988
No 76
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=96.05 E-value=0.003 Score=45.80 Aligned_cols=22 Identities=14% Similarity=0.268 Sum_probs=20.0
Q ss_pred EEEEEEcCCCccHHHHHHHHhc
Q 035574 16 SVVAILDSIGLDKTAFTAEAYN 37 (156)
Q Consensus 16 ~vi~I~G~gGvGKTtLa~~vy~ 37 (156)
++++|+|..|.|||||++.+..
T Consensus 2 ~ii~l~GpsGaGKsTl~~~L~~ 23 (186)
T 3a00_A 2 RPIVISGPSGTGKSTLLKKLFA 23 (186)
T ss_dssp CCEEEESSSSSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHh
Confidence 4689999999999999999876
No 77
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=96.04 E-value=0.0039 Score=47.16 Aligned_cols=23 Identities=22% Similarity=0.159 Sum_probs=20.9
Q ss_pred cEEEEEEcCCCccHHHHHHHHhc
Q 035574 15 LSVVAILDSIGLDKTAFTAEAYN 37 (156)
Q Consensus 15 ~~vi~I~G~gGvGKTtLa~~vy~ 37 (156)
..++.|+|..|.|||||++.+..
T Consensus 27 ~~~i~l~G~~GsGKSTl~k~La~ 49 (246)
T 2bbw_A 27 LLRAVILGPPGSGKGTVCQRIAQ 49 (246)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 46899999999999999999983
No 78
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=96.04 E-value=0.0041 Score=45.96 Aligned_cols=23 Identities=9% Similarity=0.219 Sum_probs=21.1
Q ss_pred cEEEEEEcCCCccHHHHHHHHhc
Q 035574 15 LSVVAILDSIGLDKTAFTAEAYN 37 (156)
Q Consensus 15 ~~vi~I~G~gGvGKTtLa~~vy~ 37 (156)
..++.|+|..|+|||||++.+..
T Consensus 8 g~~i~l~GpsGsGKsTl~~~L~~ 30 (208)
T 3tau_A 8 GLLIVLSGPSGVGKGTVREAVFK 30 (208)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHH
T ss_pred CcEEEEECcCCCCHHHHHHHHHh
Confidence 46899999999999999999977
No 79
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=96.03 E-value=0.018 Score=42.24 Aligned_cols=48 Identities=13% Similarity=0.274 Sum_probs=31.5
Q ss_pred CCcEEEEEEcCCCccHHHHHHHHhccccccc----cCceEEEEEcCCCCCHH
Q 035574 13 TQLSVVAILDSIGLDKTAFTAEAYNSSYMKH----YFDYLAWIPAPYHYDPD 60 (156)
Q Consensus 13 ~~~~vi~I~G~gGvGKTtLa~~vy~~~~v~~----~F~~~~wv~vs~~~~~~ 60 (156)
..-.++.|+|..|.|||||++.+........ .-...+|+.-...+...
T Consensus 23 ~~G~~~~l~G~nGsGKSTll~~l~g~~~~~~~~g~~~~~~i~~~~~~~~~~~ 74 (231)
T 4a74_A 23 ETQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTENTFRPE 74 (231)
T ss_dssp ESSEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSSCCCHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCEEEEEECCCCCCHH
Confidence 3457999999999999999999976211111 12346777655444443
No 80
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=96.03 E-value=0.0024 Score=45.64 Aligned_cols=23 Identities=17% Similarity=0.173 Sum_probs=16.6
Q ss_pred cEEEEEEcCCCccHHHHHHHHhc
Q 035574 15 LSVVAILDSIGLDKTAFTAEAYN 37 (156)
Q Consensus 15 ~~vi~I~G~gGvGKTtLa~~vy~ 37 (156)
..+|.|.|+.|+||||+|+.+..
T Consensus 5 ~~~I~l~G~~GsGKST~a~~La~ 27 (183)
T 2vli_A 5 SPIIWINGPFGVGKTHTAHTLHE 27 (183)
T ss_dssp CCEEEEECCC----CHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 45789999999999999999876
No 81
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=96.03 E-value=0.0039 Score=45.49 Aligned_cols=23 Identities=17% Similarity=0.098 Sum_probs=20.6
Q ss_pred cEEEEEEcCCCccHHHHHHHHhc
Q 035574 15 LSVVAILDSIGLDKTAFTAEAYN 37 (156)
Q Consensus 15 ~~vi~I~G~gGvGKTtLa~~vy~ 37 (156)
...|.|.|+.|+||||+|+.+..
T Consensus 20 ~~~I~l~G~~GsGKST~a~~La~ 42 (201)
T 2cdn_A 20 HMRVLLLGPPGAGKGTQAVKLAE 42 (201)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 35789999999999999999876
No 82
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=96.00 E-value=0.0038 Score=44.78 Aligned_cols=21 Identities=10% Similarity=0.090 Sum_probs=19.2
Q ss_pred EEEEEcCCCccHHHHHHHHhc
Q 035574 17 VVAILDSIGLDKTAFTAEAYN 37 (156)
Q Consensus 17 vi~I~G~gGvGKTtLa~~vy~ 37 (156)
+|.|.|++|+||||+|+.+..
T Consensus 4 ~I~l~G~~GsGKsT~a~~La~ 24 (184)
T 2iyv_A 4 KAVLVGLPGSGKSTIGRRLAK 24 (184)
T ss_dssp SEEEECSTTSSHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHH
Confidence 588999999999999999866
No 83
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=95.98 E-value=0.0042 Score=46.03 Aligned_cols=23 Identities=9% Similarity=0.071 Sum_probs=20.5
Q ss_pred cEEEEEEcCCCccHHHHHHHHhc
Q 035574 15 LSVVAILDSIGLDKTAFTAEAYN 37 (156)
Q Consensus 15 ~~vi~I~G~gGvGKTtLa~~vy~ 37 (156)
...|.+.|+.|+||||+++.+..
T Consensus 4 ~~~I~l~G~~GsGKsT~a~~La~ 26 (220)
T 1aky_A 4 SIRMVLIGPPGAGKGTQAPNLQE 26 (220)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 35789999999999999999876
No 84
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=95.98 E-value=0.0022 Score=46.99 Aligned_cols=21 Identities=19% Similarity=0.215 Sum_probs=19.2
Q ss_pred EEEEEcCCCccHHHHHHHHhc
Q 035574 17 VVAILDSIGLDKTAFTAEAYN 37 (156)
Q Consensus 17 vi~I~G~gGvGKTtLa~~vy~ 37 (156)
+|.|.|..|+||||+++.+..
T Consensus 2 ~I~i~G~~GsGKsTl~~~L~~ 22 (214)
T 1gtv_A 2 LIAIEGVDGAGKRTLVEKLSG 22 (214)
T ss_dssp EEEEEEEEEEEHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHH
Confidence 689999999999999999865
No 85
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=95.97 E-value=0.027 Score=44.44 Aligned_cols=53 Identities=15% Similarity=0.127 Sum_probs=37.6
Q ss_pred CCcEEEEEEcCCCccHHHHHHHHhccccccccCceEEEEEcCCCCCHHHHHHHHHHH
Q 035574 13 TQLSVVAILDSIGLDKTAFTAEAYNSSYMKHYFDYLAWIPAPYHYDPDQILDIVAVI 69 (156)
Q Consensus 13 ~~~~vi~I~G~gGvGKTtLa~~vy~~~~v~~~F~~~~wv~vs~~~~~~~l~~~il~~ 69 (156)
..-.++-|.|.+|+||||||.++..+..... ...+|++.. .+..++...++..
T Consensus 66 ~~G~l~li~G~pG~GKTtl~l~ia~~~a~~g--~~vl~~slE--~s~~~l~~R~~~~ 118 (315)
T 3bh0_A 66 KRRNFVLIAARPSMGKTAFALKQAKNMSDND--DVVNLHSLE--MGKKENIKRLIVT 118 (315)
T ss_dssp CTTCEEEEECCTTSSHHHHHHHHHHHHHTTT--CEEEEEESS--SCHHHHHHHHHHH
T ss_pred CCCcEEEEEeCCCCCHHHHHHHHHHHHHHcC--CeEEEEECC--CCHHHHHHHHHHH
Confidence 4457889999999999999999876432222 457777654 5667777776654
No 86
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=95.97 E-value=0.0046 Score=45.17 Aligned_cols=23 Identities=4% Similarity=-0.022 Sum_probs=20.9
Q ss_pred cEEEEEEcCCCccHHHHHHHHhc
Q 035574 15 LSVVAILDSIGLDKTAFTAEAYN 37 (156)
Q Consensus 15 ~~vi~I~G~gGvGKTtLa~~vy~ 37 (156)
...|.|.|+.|+||||+++.+.+
T Consensus 9 ~~~I~l~G~~GsGKsT~~~~L~~ 31 (215)
T 1nn5_A 9 GALIVLEGVDRAGKSTQSRKLVE 31 (215)
T ss_dssp CCEEEEEESTTSSHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 35799999999999999999977
No 87
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=95.94 E-value=0.0082 Score=47.59 Aligned_cols=33 Identities=24% Similarity=0.258 Sum_probs=24.9
Q ss_pred HHHhcCCCCcEEEEEEcCCCccHHHHHHHHhcc
Q 035574 6 DLLIEGPTQLSVVAILDSIGLDKTAFTAEAYNS 38 (156)
Q Consensus 6 ~~L~~~~~~~~vi~I~G~gGvGKTtLa~~vy~~ 38 (156)
+.+..+....+.+-++|.+|+|||+||+.+.+.
T Consensus 61 ~~~~~~~~~~~~vLl~GppGtGKT~la~~la~~ 93 (368)
T 3uk6_A 61 EMIREGKIAGRAVLIAGQPGTGKTAIAMGMAQA 93 (368)
T ss_dssp HHHHTTCCTTCEEEEEESTTSSHHHHHHHHHHH
T ss_pred HHHHcCCCCCCEEEEECCCCCCHHHHHHHHHHH
Confidence 333333333467889999999999999999873
No 88
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=95.93 E-value=0.0046 Score=45.16 Aligned_cols=23 Identities=4% Similarity=-0.171 Sum_probs=21.0
Q ss_pred cEEEEEEcCCCccHHHHHHHHhc
Q 035574 15 LSVVAILDSIGLDKTAFTAEAYN 37 (156)
Q Consensus 15 ~~vi~I~G~gGvGKTtLa~~vy~ 37 (156)
..+|.|.|..|+||||+++.+..
T Consensus 10 ~~~I~l~G~~GsGKST~~~~L~~ 32 (212)
T 2wwf_A 10 GKFIVFEGLDRSGKSTQSKLLVE 32 (212)
T ss_dssp SCEEEEEESTTSSHHHHHHHHHH
T ss_pred CCEEEEEcCCCCCHHHHHHHHHH
Confidence 46899999999999999999977
No 89
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=95.91 E-value=0.0045 Score=46.16 Aligned_cols=23 Identities=17% Similarity=0.200 Sum_probs=20.7
Q ss_pred cEEEEEEcCCCccHHHHHHHHhc
Q 035574 15 LSVVAILDSIGLDKTAFTAEAYN 37 (156)
Q Consensus 15 ~~vi~I~G~gGvGKTtLa~~vy~ 37 (156)
...|.|.|+.|+||||+++.+..
T Consensus 7 ~~~I~l~G~~GsGKsT~a~~La~ 29 (227)
T 1zd8_A 7 LLRAVIMGAPGSGKGTVSSRITT 29 (227)
T ss_dssp CCEEEEEECTTSSHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 46789999999999999999876
No 90
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=95.90 E-value=0.0047 Score=44.96 Aligned_cols=24 Identities=13% Similarity=0.080 Sum_probs=21.2
Q ss_pred CcEEEEEEcCCCccHHHHHHHHhc
Q 035574 14 QLSVVAILDSIGLDKTAFTAEAYN 37 (156)
Q Consensus 14 ~~~vi~I~G~gGvGKTtLa~~vy~ 37 (156)
.+.++.|.|..|+|||||+..+..
T Consensus 3 ~~~~i~i~G~sGsGKTTl~~~L~~ 26 (169)
T 1xjc_A 3 AMNVWQVVGYKHSGKTTLMEKWVA 26 (169)
T ss_dssp -CCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHH
Confidence 467899999999999999999877
No 91
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=95.89 E-value=0.0071 Score=45.89 Aligned_cols=25 Identities=12% Similarity=-0.005 Sum_probs=21.9
Q ss_pred CCcEEEEEEcCCCccHHHHHHHHhc
Q 035574 13 TQLSVVAILDSIGLDKTAFTAEAYN 37 (156)
Q Consensus 13 ~~~~vi~I~G~gGvGKTtLa~~vy~ 37 (156)
.....|.|.|.+|+||||+|+.+.+
T Consensus 27 ~~~~~I~l~G~~GsGKsT~a~~L~~ 51 (243)
T 3tlx_A 27 KPDGRYIFLGAPGSGKGTQSLNLKK 51 (243)
T ss_dssp SCCEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHH
Confidence 3567899999999999999999865
No 92
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=95.88 E-value=0.0037 Score=44.17 Aligned_cols=25 Identities=8% Similarity=0.044 Sum_probs=21.8
Q ss_pred CcEEEEEEcCCCccHHHHHHHHhcc
Q 035574 14 QLSVVAILDSIGLDKTAFTAEAYNS 38 (156)
Q Consensus 14 ~~~vi~I~G~gGvGKTtLa~~vy~~ 38 (156)
.-..+.|+|..|.|||||++.++..
T Consensus 35 ~g~~~~l~G~~G~GKTtL~~~i~~~ 59 (149)
T 2kjq_A 35 HGQFIYVWGEEGAGKSHLLQAWVAQ 59 (149)
T ss_dssp CCSEEEEESSSTTTTCHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHH
Confidence 3467899999999999999999873
No 93
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=95.88 E-value=0.006 Score=43.65 Aligned_cols=23 Identities=17% Similarity=0.044 Sum_probs=20.6
Q ss_pred cEEEEEEcCCCccHHHHHHHHhc
Q 035574 15 LSVVAILDSIGLDKTAFTAEAYN 37 (156)
Q Consensus 15 ~~vi~I~G~gGvGKTtLa~~vy~ 37 (156)
-.+|.+.|+.|.||||+++.+..
T Consensus 5 g~~i~l~G~~GsGKST~~~~L~~ 27 (179)
T 2pez_A 5 GCTVWLTGLSGAGKTTVSMALEE 27 (179)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 46789999999999999999876
No 94
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=95.88 E-value=0.0053 Score=44.69 Aligned_cols=22 Identities=18% Similarity=0.265 Sum_probs=19.2
Q ss_pred EEEEEcCCCccHHHHHHHHhcc
Q 035574 17 VVAILDSIGLDKTAFTAEAYNS 38 (156)
Q Consensus 17 vi~I~G~gGvGKTtLa~~vy~~ 38 (156)
.+.|+|..|.|||||++.+...
T Consensus 2 ~i~l~G~nGsGKTTLl~~l~g~ 23 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLVKKIVER 23 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 4789999999999999988653
No 95
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=95.88 E-value=0.0056 Score=46.51 Aligned_cols=25 Identities=8% Similarity=0.110 Sum_probs=21.6
Q ss_pred CCcEEEEEEcCCCccHHHHHHHHhc
Q 035574 13 TQLSVVAILDSIGLDKTAFTAEAYN 37 (156)
Q Consensus 13 ~~~~vi~I~G~gGvGKTtLa~~vy~ 37 (156)
....+|+|.|..|.||||+|+.+..
T Consensus 20 ~~~~iI~I~G~~GSGKST~a~~L~~ 44 (252)
T 1uj2_A 20 GEPFLIGVSGGTASGKSSVCAKIVQ 44 (252)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCcEEEEEECCCCCCHHHHHHHHHH
Confidence 3467899999999999999998866
No 96
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=95.88 E-value=0.0039 Score=45.86 Aligned_cols=22 Identities=14% Similarity=0.271 Sum_probs=19.8
Q ss_pred EEEEEEcCCCccHHHHHHHHhc
Q 035574 16 SVVAILDSIGLDKTAFTAEAYN 37 (156)
Q Consensus 16 ~vi~I~G~gGvGKTtLa~~vy~ 37 (156)
+.+.|+|..|.|||||++.+..
T Consensus 5 ~~i~lvGpsGaGKSTLl~~L~~ 26 (198)
T 1lvg_A 5 RPVVLSGPSGAGKSTLLKKLFQ 26 (198)
T ss_dssp CCEEEECCTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHh
Confidence 5789999999999999998865
No 97
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=95.87 E-value=0.0048 Score=48.19 Aligned_cols=26 Identities=12% Similarity=0.111 Sum_probs=21.8
Q ss_pred CCcEEEEEEcCCCccHHHHHHHHhcc
Q 035574 13 TQLSVVAILDSIGLDKTAFTAEAYNS 38 (156)
Q Consensus 13 ~~~~vi~I~G~gGvGKTtLa~~vy~~ 38 (156)
...+.+-++|.+|+|||+||+.+++.
T Consensus 34 ~~p~~lLl~GppGtGKT~la~aiA~~ 59 (293)
T 3t15_A 34 KVPLILGIWGGKGQGKSFQCELVFRK 59 (293)
T ss_dssp CCCSEEEEEECTTSCHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 33467788999999999999999883
No 98
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=95.86 E-value=0.0052 Score=44.24 Aligned_cols=21 Identities=10% Similarity=-0.037 Sum_probs=19.4
Q ss_pred EEEEEcCCCccHHHHHHHHhc
Q 035574 17 VVAILDSIGLDKTAFTAEAYN 37 (156)
Q Consensus 17 vi~I~G~gGvGKTtLa~~vy~ 37 (156)
.|.|.|..|+||||+++.+.+
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~ 22 (197)
T 2z0h_A 2 FITFEGIDGSGKSTQIQLLAQ 22 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 588999999999999999977
No 99
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=95.85 E-value=0.0064 Score=44.82 Aligned_cols=26 Identities=15% Similarity=0.275 Sum_probs=22.3
Q ss_pred CCcEEEEEEcCCCccHHHHHHHHhcc
Q 035574 13 TQLSVVAILDSIGLDKTAFTAEAYNS 38 (156)
Q Consensus 13 ~~~~vi~I~G~gGvGKTtLa~~vy~~ 38 (156)
.....|.|+|.+|+|||||+..+...
T Consensus 36 ~~~~~i~ivG~~gvGKTtl~~~l~~~ 61 (226)
T 2hf9_A 36 HGVVAFDFMGAIGSGKTLLIEKLIDN 61 (226)
T ss_dssp TTCEEEEEEESTTSSHHHHHHHHHHH
T ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHH
Confidence 35788999999999999999988764
No 100
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=95.82 E-value=0.0065 Score=48.20 Aligned_cols=26 Identities=8% Similarity=0.092 Sum_probs=22.7
Q ss_pred CCCcEEEEEEcCCCccHHHHHHHHhc
Q 035574 12 PTQLSVVAILDSIGLDKTAFTAEAYN 37 (156)
Q Consensus 12 ~~~~~vi~I~G~gGvGKTtLa~~vy~ 37 (156)
.....+++|+|..|.|||||++.+..
T Consensus 87 ~~~g~ivgI~G~sGsGKSTL~~~L~g 112 (312)
T 3aez_A 87 RPVPFIIGVAGSVAVGKSTTARVLQA 112 (312)
T ss_dssp SCCCEEEEEECCTTSCHHHHHHHHHH
T ss_pred CCCCEEEEEECCCCchHHHHHHHHHh
Confidence 34567999999999999999998876
No 101
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=95.82 E-value=0.004 Score=45.97 Aligned_cols=22 Identities=14% Similarity=0.268 Sum_probs=19.8
Q ss_pred EEEEEEcCCCccHHHHHHHHhc
Q 035574 16 SVVAILDSIGLDKTAFTAEAYN 37 (156)
Q Consensus 16 ~vi~I~G~gGvGKTtLa~~vy~ 37 (156)
|.|.|+|..|+|||||++.+..
T Consensus 2 RpIVi~GPSG~GK~Tl~~~L~~ 23 (186)
T 1ex7_A 2 RPIVISGPSGTGKSTLLKKLFA 23 (186)
T ss_dssp CCEEEECCTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 4578999999999999999876
No 102
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=95.81 E-value=0.0055 Score=45.14 Aligned_cols=23 Identities=13% Similarity=0.057 Sum_probs=20.7
Q ss_pred cEEEEEEcCCCccHHHHHHHHhc
Q 035574 15 LSVVAILDSIGLDKTAFTAEAYN 37 (156)
Q Consensus 15 ~~vi~I~G~gGvGKTtLa~~vy~ 37 (156)
-.+++|+|..|.|||||++.+..
T Consensus 20 Gei~~l~GpnGsGKSTLl~~l~g 42 (207)
T 1znw_A 20 GRVVVLSGPSAVGKSTVVRCLRE 42 (207)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHh
Confidence 46899999999999999999865
No 103
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=95.81 E-value=0.0097 Score=46.46 Aligned_cols=25 Identities=12% Similarity=0.187 Sum_probs=21.9
Q ss_pred CCcEEEEEEcCCCccHHHHHHHHhc
Q 035574 13 TQLSVVAILDSIGLDKTAFTAEAYN 37 (156)
Q Consensus 13 ~~~~vi~I~G~gGvGKTtLa~~vy~ 37 (156)
....+|-+.|++|+||||+|+.+..
T Consensus 31 ~~~~livl~G~sGsGKSTla~~L~~ 55 (287)
T 1gvn_B 31 ESPTAFLLGGQPGSGKTSLRSAIFE 55 (287)
T ss_dssp SSCEEEEEECCTTSCTHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHH
Confidence 3457889999999999999999976
No 104
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=95.78 E-value=0.0058 Score=44.33 Aligned_cols=22 Identities=9% Similarity=-0.017 Sum_probs=20.5
Q ss_pred EEEEEEcCCCccHHHHHHHHhc
Q 035574 16 SVVAILDSIGLDKTAFTAEAYN 37 (156)
Q Consensus 16 ~vi~I~G~gGvGKTtLa~~vy~ 37 (156)
..|.|.|+.|+||||+++.+.+
T Consensus 5 ~~I~l~G~~GsGKsT~~~~L~~ 26 (204)
T 2v54_A 5 ALIVFEGLDKSGKTTQCMNIME 26 (204)
T ss_dssp CEEEEECCTTSSHHHHHHHHHH
T ss_pred cEEEEEcCCCCCHHHHHHHHHH
Confidence 5789999999999999999987
No 105
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=95.78 E-value=0.0071 Score=44.59 Aligned_cols=23 Identities=9% Similarity=-0.025 Sum_probs=20.9
Q ss_pred cEEEEEEcCCCccHHHHHHHHhc
Q 035574 15 LSVVAILDSIGLDKTAFTAEAYN 37 (156)
Q Consensus 15 ~~vi~I~G~gGvGKTtLa~~vy~ 37 (156)
..+|.|.|+.|.||||+++.+..
T Consensus 25 ~~~i~~~G~~GsGKsT~~~~l~~ 47 (211)
T 1m7g_A 25 GLTIWLTGLSASGKSTLAVELEH 47 (211)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHH
Confidence 46899999999999999999876
No 106
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=95.78 E-value=0.0071 Score=45.77 Aligned_cols=24 Identities=4% Similarity=0.102 Sum_probs=21.3
Q ss_pred CcEEEEEEcCCCccHHHHHHHHhc
Q 035574 14 QLSVVAILDSIGLDKTAFTAEAYN 37 (156)
Q Consensus 14 ~~~vi~I~G~gGvGKTtLa~~vy~ 37 (156)
...+++|.|..|.|||||++.+..
T Consensus 24 ~g~iigI~G~~GsGKSTl~k~L~~ 47 (245)
T 2jeo_A 24 RPFLIGVSGGTASGKSTVCEKIME 47 (245)
T ss_dssp CSEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHH
Confidence 457899999999999999998865
No 107
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=95.77 E-value=0.0072 Score=47.00 Aligned_cols=24 Identities=17% Similarity=0.200 Sum_probs=21.2
Q ss_pred CCcEEEEEEcCCCccHHHHHHHHh
Q 035574 13 TQLSVVAILDSIGLDKTAFTAEAY 36 (156)
Q Consensus 13 ~~~~vi~I~G~gGvGKTtLa~~vy 36 (156)
....+|.|.|+.|+||||+|+.+.
T Consensus 73 ~~~~iI~I~G~~GSGKSTva~~La 96 (281)
T 2f6r_A 73 SGLYVLGLTGISGSGKSSVAQRLK 96 (281)
T ss_dssp TTCEEEEEEECTTSCHHHHHHHHH
T ss_pred CCCEEEEEECCCCCCHHHHHHHHH
Confidence 346789999999999999999886
No 108
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=95.76 E-value=0.01 Score=47.21 Aligned_cols=24 Identities=25% Similarity=0.306 Sum_probs=20.9
Q ss_pred CcEEEEEEcCCCccHHHHHHHHhc
Q 035574 14 QLSVVAILDSIGLDKTAFTAEAYN 37 (156)
Q Consensus 14 ~~~vi~I~G~gGvGKTtLa~~vy~ 37 (156)
..+++.|+|.+|+||||++..+..
T Consensus 104 ~~~vI~ivG~~G~GKTT~~~~LA~ 127 (320)
T 1zu4_A 104 RLNIFMLVGVNGTGKTTSLAKMAN 127 (320)
T ss_dssp SCEEEEEESSTTSSHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 467999999999999999888755
No 109
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=95.76 E-value=0.006 Score=46.58 Aligned_cols=22 Identities=14% Similarity=0.154 Sum_probs=20.1
Q ss_pred cEEEEEEcCCCccHHHHHHHHh
Q 035574 15 LSVVAILDSIGLDKTAFTAEAY 36 (156)
Q Consensus 15 ~~vi~I~G~gGvGKTtLa~~vy 36 (156)
..+|+|+|+.|.||||+++.+.
T Consensus 27 g~~I~I~G~~GsGKSTl~k~La 48 (252)
T 4e22_A 27 APVITVDGPSGAGKGTLCKALA 48 (252)
T ss_dssp SCEEEEECCTTSSHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHH
Confidence 4689999999999999999887
No 110
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=95.74 E-value=0.009 Score=45.50 Aligned_cols=25 Identities=16% Similarity=0.076 Sum_probs=21.9
Q ss_pred CCcEEEEEEcCCCccHHHHHHHHhc
Q 035574 13 TQLSVVAILDSIGLDKTAFTAEAYN 37 (156)
Q Consensus 13 ~~~~vi~I~G~gGvGKTtLa~~vy~ 37 (156)
....+|.++|.+|.||||+|+.+..
T Consensus 30 ~~~~~i~l~G~~GsGKSTla~~L~~ 54 (253)
T 2p5t_B 30 KQPIAILLGGQSGAGKTTIHRIKQK 54 (253)
T ss_dssp SSCEEEEEESCGGGTTHHHHHHHHH
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHH
Confidence 3457899999999999999999876
No 111
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=95.72 E-value=0.0079 Score=44.40 Aligned_cols=23 Identities=22% Similarity=0.274 Sum_probs=20.4
Q ss_pred cEEEEEEcCCCccHHHHHHHHhc
Q 035574 15 LSVVAILDSIGLDKTAFTAEAYN 37 (156)
Q Consensus 15 ~~vi~I~G~gGvGKTtLa~~vy~ 37 (156)
..+|.|.|+.|.||||+++.+..
T Consensus 4 ~~~I~i~G~~GSGKST~~~~L~~ 26 (218)
T 1vht_A 4 RYIVALTGGIGSGKSTVANAFAD 26 (218)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHH
Confidence 36899999999999999999854
No 112
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=95.70 E-value=0.0054 Score=45.49 Aligned_cols=23 Identities=13% Similarity=-0.142 Sum_probs=20.4
Q ss_pred cEEEEEEcCCCccHHHHHHHHhc
Q 035574 15 LSVVAILDSIGLDKTAFTAEAYN 37 (156)
Q Consensus 15 ~~vi~I~G~gGvGKTtLa~~vy~ 37 (156)
...|.|.|+.|+||||+++.+..
T Consensus 5 ~~~I~l~G~~GsGKsT~~~~La~ 27 (222)
T 1zak_A 5 PLKVMISGAPASGKGTQCELIKT 27 (222)
T ss_dssp SCCEEEEESTTSSHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 35689999999999999999876
No 113
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=95.67 E-value=0.011 Score=47.36 Aligned_cols=24 Identities=25% Similarity=0.176 Sum_probs=21.7
Q ss_pred CcEEEEEEcCCCccHHHHHHHHhc
Q 035574 14 QLSVVAILDSIGLDKTAFTAEAYN 37 (156)
Q Consensus 14 ~~~vi~I~G~gGvGKTtLa~~vy~ 37 (156)
...++.++|..|+||||+++.+..
T Consensus 128 ~g~vi~lvG~nGaGKTTll~~Lag 151 (328)
T 3e70_C 128 KPYVIMFVGFNGSGKTTTIAKLAN 151 (328)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 468999999999999999998876
No 114
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=95.67 E-value=0.056 Score=43.13 Aligned_cols=52 Identities=12% Similarity=0.221 Sum_probs=38.0
Q ss_pred CCcEEEEEEcCCCccHHHHHHHHhccccccc----cCceEEEEEcCCCCCHHHHHH
Q 035574 13 TQLSVVAILDSIGLDKTAFTAEAYNSSYMKH----YFDYLAWIPAPYHYDPDQILD 64 (156)
Q Consensus 13 ~~~~vi~I~G~gGvGKTtLa~~vy~~~~v~~----~F~~~~wv~vs~~~~~~~l~~ 64 (156)
..-.++-|.|.+|+||||||.++........ .=...+|++....++..++..
T Consensus 120 ~~G~i~~I~G~~GsGKTtla~~la~~~~~~~~~gg~~~~vlyi~~E~~~~~~~l~~ 175 (343)
T 1v5w_A 120 ESMAITEAFGEFRTGKTQLSHTLCVTAQLPGAGGYPGGKIIFIDTENTFRPDRLRD 175 (343)
T ss_dssp CSSEEEEEECCTTCTHHHHHHHHHHHTTSCBTTTBCCCEEEEEESSSCCCHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCeEEEEECCCCCCHHHHHH
Confidence 4457899999999999999999877422211 123588998888888776654
No 115
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=95.66 E-value=0.011 Score=45.79 Aligned_cols=22 Identities=14% Similarity=0.083 Sum_probs=19.7
Q ss_pred EEEEEcCCCccHHHHHHHHhcc
Q 035574 17 VVAILDSIGLDKTAFTAEAYNS 38 (156)
Q Consensus 17 vi~I~G~gGvGKTtLa~~vy~~ 38 (156)
.+-++|.+|+||||+|+.+++.
T Consensus 48 ~~ll~G~~G~GKT~la~~l~~~ 69 (327)
T 1iqp_A 48 HLLFAGPPGVGKTTAALALARE 69 (327)
T ss_dssp EEEEESCTTSSHHHHHHHHHHH
T ss_pred eEEEECcCCCCHHHHHHHHHHH
Confidence 3889999999999999999873
No 116
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=95.66 E-value=0.0069 Score=44.51 Aligned_cols=21 Identities=10% Similarity=0.150 Sum_probs=18.7
Q ss_pred EEEEEcCCCccHHHHHHHHhc
Q 035574 17 VVAILDSIGLDKTAFTAEAYN 37 (156)
Q Consensus 17 vi~I~G~gGvGKTtLa~~vy~ 37 (156)
.|.|.|+.|+||||+|+.+..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~ 22 (216)
T 3fb4_A 2 NIVLMGLPGAGKGTQAEQIIE 22 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 377899999999999999866
No 117
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=95.65 E-value=0.0077 Score=44.44 Aligned_cols=25 Identities=20% Similarity=0.251 Sum_probs=22.1
Q ss_pred CCcEEEEEEcCCCccHHHHHHHHhc
Q 035574 13 TQLSVVAILDSIGLDKTAFTAEAYN 37 (156)
Q Consensus 13 ~~~~vi~I~G~gGvGKTtLa~~vy~ 37 (156)
....+|+|.|+.|.||||+++.+..
T Consensus 10 ~~~~iIgltG~~GSGKSTva~~L~~ 34 (192)
T 2grj_A 10 HHHMVIGVTGKIGTGKSTVCEILKN 34 (192)
T ss_dssp CCEEEEEEECSTTSSHHHHHHHHHH
T ss_pred ccceEEEEECCCCCCHHHHHHHHHH
Confidence 4567999999999999999998866
No 118
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=95.65 E-value=0.0081 Score=44.09 Aligned_cols=26 Identities=23% Similarity=0.321 Sum_probs=22.5
Q ss_pred CCcEEEEEEcCCCccHHHHHHHHhcc
Q 035574 13 TQLSVVAILDSIGLDKTAFTAEAYNS 38 (156)
Q Consensus 13 ~~~~vi~I~G~gGvGKTtLa~~vy~~ 38 (156)
....++.|+|.+|+|||||+..+...
T Consensus 28 ~~~~~i~i~G~~g~GKTTl~~~l~~~ 53 (221)
T 2wsm_A 28 SGTVAVNIMGAIGSGKTLLIERTIER 53 (221)
T ss_dssp HTCEEEEEEECTTSCHHHHHHHHHHH
T ss_pred cCceEEEEEcCCCCCHHHHHHHHHHH
Confidence 35789999999999999999988763
No 119
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=95.64 E-value=0.014 Score=44.63 Aligned_cols=27 Identities=26% Similarity=0.156 Sum_probs=22.9
Q ss_pred CCCcEEEEEEcCCCccHHHHHHHHhcc
Q 035574 12 PTQLSVVAILDSIGLDKTAFTAEAYNS 38 (156)
Q Consensus 12 ~~~~~vi~I~G~gGvGKTtLa~~vy~~ 38 (156)
.....-+-++|.+|+|||+||+.+++.
T Consensus 61 ~~~~~~vLl~G~~GtGKT~la~~ia~~ 87 (272)
T 1d2n_A 61 RTPLVSVLLEGPPHSGKTALAAKIAEE 87 (272)
T ss_dssp SCSEEEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCCeEEEEECCCCCcHHHHHHHHHHH
Confidence 345677889999999999999999883
No 120
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=95.64 E-value=0.035 Score=43.82 Aligned_cols=56 Identities=13% Similarity=0.122 Sum_probs=38.9
Q ss_pred CcEEEEEEcCCCccHHHHHHHHhcccccccc----CceEEEEEcCCCCCHHHHHHHHHHHh
Q 035574 14 QLSVVAILDSIGLDKTAFTAEAYNSSYMKHY----FDYLAWIPAPYHYDPDQILDIVAVIL 70 (156)
Q Consensus 14 ~~~vi~I~G~gGvGKTtLa~~vy~~~~v~~~----F~~~~wv~vs~~~~~~~l~~~il~~l 70 (156)
.-.++-|+|.+|+||||||.++..+...... =...+|++....++..++... ++.+
T Consensus 106 ~G~i~~i~G~~GsGKT~la~~la~~~~~~~~~gg~~~~vlyi~~e~~~~~~~l~~~-~~~~ 165 (324)
T 2z43_A 106 TRTMTEFFGEFGSGKTQLCHQLSVNVQLPPEKGGLSGKAVYIDTEGTFRWERIENM-AKAL 165 (324)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSSCCCHHHHHHH-HHHT
T ss_pred CCcEEEEECCCCCCHhHHHHHHHHHHhcccccCCCCCeEEEEECCCCCCHHHHHHH-HHHh
Confidence 3468899999999999999998763221111 135789988888877766543 3443
No 121
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=95.64 E-value=0.0069 Score=45.16 Aligned_cols=23 Identities=26% Similarity=0.332 Sum_probs=20.4
Q ss_pred CcEEEEEEcCCCccHHHHHHHHh
Q 035574 14 QLSVVAILDSIGLDKTAFTAEAY 36 (156)
Q Consensus 14 ~~~vi~I~G~gGvGKTtLa~~vy 36 (156)
.-.++.|+|..|.|||||++.+.
T Consensus 29 ~G~~~~l~GpnGsGKSTLl~~i~ 51 (251)
T 2ehv_A 29 EGTTVLLTGGTGTGKTTFAAQFI 51 (251)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHH
T ss_pred CCcEEEEEeCCCCCHHHHHHHHH
Confidence 34789999999999999999876
No 122
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=95.64 E-value=0.0081 Score=47.51 Aligned_cols=24 Identities=25% Similarity=0.202 Sum_probs=21.4
Q ss_pred CcEEEEEEcCCCccHHHHHHHHhc
Q 035574 14 QLSVVAILDSIGLDKTAFTAEAYN 37 (156)
Q Consensus 14 ~~~vi~I~G~gGvGKTtLa~~vy~ 37 (156)
...++.|+|..|+|||||++.+..
T Consensus 101 ~g~vi~lvG~nGsGKTTll~~Lag 124 (304)
T 1rj9_A 101 KGRVVLVVGVNGVGKTTTIAKLGR 124 (304)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHHH
T ss_pred CCeEEEEECCCCCcHHHHHHHHHH
Confidence 457999999999999999998875
No 123
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=95.63 E-value=0.0073 Score=43.85 Aligned_cols=21 Identities=14% Similarity=0.132 Sum_probs=19.4
Q ss_pred EEEEEcCCCccHHHHHHHHhc
Q 035574 17 VVAILDSIGLDKTAFTAEAYN 37 (156)
Q Consensus 17 vi~I~G~gGvGKTtLa~~vy~ 37 (156)
+|+|.|..|.||||+++.+..
T Consensus 4 ~i~i~G~~GsGKst~~~~la~ 24 (208)
T 3ake_A 4 IVTIDGPSASGKSSVARRVAA 24 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 799999999999999998865
No 124
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=95.61 E-value=0.0062 Score=50.40 Aligned_cols=23 Identities=26% Similarity=0.313 Sum_probs=21.4
Q ss_pred cEEEEEEcCCCccHHHHHHHHhc
Q 035574 15 LSVVAILDSIGLDKTAFTAEAYN 37 (156)
Q Consensus 15 ~~vi~I~G~gGvGKTtLa~~vy~ 37 (156)
...+-|+|.+|+||||||+.+++
T Consensus 130 ~~~lll~Gp~G~GKTtLa~aia~ 152 (440)
T 2z4s_A 130 YNPLFIYGGVGLGKTHLLQSIGN 152 (440)
T ss_dssp SCCEEEECSSSSSHHHHHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHHH
Confidence 66789999999999999999988
No 125
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=95.61 E-value=0.0059 Score=48.49 Aligned_cols=24 Identities=25% Similarity=0.257 Sum_probs=21.1
Q ss_pred cEEEEEEcCCCccHHHHHHHHhcc
Q 035574 15 LSVVAILDSIGLDKTAFTAEAYNS 38 (156)
Q Consensus 15 ~~vi~I~G~gGvGKTtLa~~vy~~ 38 (156)
...+.++|.+|+||||||+.+.+.
T Consensus 51 ~~~~ll~Gp~G~GKTTLa~~ia~~ 74 (334)
T 1in4_A 51 LDHVLLAGPPGLGKTTLAHIIASE 74 (334)
T ss_dssp CCCEEEESSTTSSHHHHHHHHHHH
T ss_pred CCeEEEECCCCCcHHHHHHHHHHH
Confidence 466899999999999999999873
No 126
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=95.59 E-value=0.042 Score=43.12 Aligned_cols=53 Identities=15% Similarity=0.187 Sum_probs=38.4
Q ss_pred CCcEEEEEEcCCCccHHHHHHHHhccccccc---------cC-----ceEEEEEcCCCCCHHHHHHH
Q 035574 13 TQLSVVAILDSIGLDKTAFTAEAYNSSYMKH---------YF-----DYLAWIPAPYHYDPDQILDI 65 (156)
Q Consensus 13 ~~~~vi~I~G~gGvGKTtLa~~vy~~~~v~~---------~F-----~~~~wv~vs~~~~~~~l~~~ 65 (156)
..-.++-|.|.+|+|||+||.++..+..... .. ...+|++....++..++.+.
T Consensus 96 ~~g~i~~i~G~~gsGKT~la~~la~~~~l~~~~~~~~~~~~~gg~~~~~v~yi~~e~~~~~~~l~~~ 162 (322)
T 2i1q_A 96 ESQSVTEFAGVFGSGKTQIMHQSCVNLQNPEFLFYDEEAVSKGEVAQPKAVYIDTEGTFRPERIMQM 162 (322)
T ss_dssp ETTEEEEEEESTTSSHHHHHHHHHHHTTCGGGEECCTTTSCTTTTSSEEEEEEESSSCCCHHHHHHH
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHHHhccccccccccccccCCCCCceEEEEECCCCCCHHHHHHH
Confidence 3457899999999999999999876322211 11 35889998888888776643
No 127
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=95.59 E-value=0.0059 Score=45.61 Aligned_cols=23 Identities=17% Similarity=0.265 Sum_probs=20.5
Q ss_pred cEEEEEEcCCCccHHHHHHHHhc
Q 035574 15 LSVVAILDSIGLDKTAFTAEAYN 37 (156)
Q Consensus 15 ~~vi~I~G~gGvGKTtLa~~vy~ 37 (156)
-.+++|+|..|.|||||++.+..
T Consensus 23 G~~~~lvGpsGsGKSTLl~~L~g 45 (218)
T 1z6g_A 23 IYPLVICGPSGVGKGTLIKKLLN 45 (218)
T ss_dssp CCCEEEECSTTSSHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHh
Confidence 46789999999999999998865
No 128
>3end_A Light-independent protochlorophyllide reductase iron-sulfur ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2} PDB: 3fwy_A*
Probab=95.59 E-value=0.0087 Score=46.60 Aligned_cols=25 Identities=20% Similarity=0.239 Sum_probs=20.7
Q ss_pred CCcEEEEEEcCCCccHHHHHHHHhc
Q 035574 13 TQLSVVAILDSIGLDKTAFTAEAYN 37 (156)
Q Consensus 13 ~~~~vi~I~G~gGvGKTtLa~~vy~ 37 (156)
...++|+|+|-||+||||+|..+..
T Consensus 39 ~~~~vI~v~~KGGvGKTT~a~nLA~ 63 (307)
T 3end_A 39 TGAKVFAVYGKGGIGKSTTSSNLSA 63 (307)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCceEEEEECCCCccHHHHHHHHHH
Confidence 4578999999999999998877654
No 129
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=95.57 E-value=0.0077 Score=44.32 Aligned_cols=21 Identities=10% Similarity=0.075 Sum_probs=18.7
Q ss_pred EEEEEcCCCccHHHHHHHHhc
Q 035574 17 VVAILDSIGLDKTAFTAEAYN 37 (156)
Q Consensus 17 vi~I~G~gGvGKTtLa~~vy~ 37 (156)
.|.|.|++|+||||+|+.+..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~ 22 (216)
T 3dl0_A 2 NLVLMGLPGAGKGTQGERIVE 22 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 378899999999999999866
No 130
>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*
Probab=95.56 E-value=0.012 Score=41.98 Aligned_cols=33 Identities=18% Similarity=0.132 Sum_probs=25.0
Q ss_pred HHHhcCCCCcEEEEEEcCCCccHHHHHHHHhcc
Q 035574 6 DLLIEGPTQLSVVAILDSIGLDKTAFTAEAYNS 38 (156)
Q Consensus 6 ~~L~~~~~~~~vi~I~G~gGvGKTtLa~~vy~~ 38 (156)
..+...+.....|.++|.+|+|||||...+.++
T Consensus 7 ~~~~~~~~~~~ki~ivG~~~vGKSsL~~~l~~~ 39 (181)
T 1fzq_A 7 RKLKSAPDQEVRILLLGLDNAGKTTLLKQLASE 39 (181)
T ss_dssp HHCSSCCSSCEEEEEEESTTSSHHHHHHHHCCS
T ss_pred HHHhccCCCceEEEEECCCCCCHHHHHHHHhcC
Confidence 333333345667899999999999999998764
No 131
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=95.56 E-value=0.0099 Score=46.67 Aligned_cols=25 Identities=20% Similarity=0.175 Sum_probs=21.3
Q ss_pred CCcEEEEEEcCCCccHHHHHHHHhc
Q 035574 13 TQLSVVAILDSIGLDKTAFTAEAYN 37 (156)
Q Consensus 13 ~~~~vi~I~G~gGvGKTtLa~~vy~ 37 (156)
.....+-|+|.+|+|||+||+.+.+
T Consensus 53 ~~~~~vll~G~~GtGKT~la~~ia~ 77 (338)
T 3pfi_A 53 ECLDHILFSGPAGLGKTTLANIISY 77 (338)
T ss_dssp SCCCCEEEECSTTSSHHHHHHHHHH
T ss_pred CCCCeEEEECcCCCCHHHHHHHHHH
Confidence 3445678999999999999999977
No 132
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=95.53 E-value=0.015 Score=47.24 Aligned_cols=26 Identities=19% Similarity=0.206 Sum_probs=21.9
Q ss_pred CCCcEEEEEEcCCCccHHHHHHHHhc
Q 035574 12 PTQLSVVAILDSIGLDKTAFTAEAYN 37 (156)
Q Consensus 12 ~~~~~vi~I~G~gGvGKTtLa~~vy~ 37 (156)
......|.++|+.|.||||+++.+..
T Consensus 21 ~g~~~~i~l~G~~G~GKTTl~~~la~ 46 (359)
T 2ga8_A 21 DNYRVCVILVGSPGSGKSTIAEELCQ 46 (359)
T ss_dssp TCSCEEEEEECCTTSSHHHHHHHHHH
T ss_pred cCCeeEEEEECCCCCcHHHHHHHHHH
Confidence 34456789999999999999998876
No 133
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=95.52 E-value=0.0075 Score=46.19 Aligned_cols=24 Identities=13% Similarity=0.105 Sum_probs=21.2
Q ss_pred CcEEEEEEcCCCccHHHHHHHHhc
Q 035574 14 QLSVVAILDSIGLDKTAFTAEAYN 37 (156)
Q Consensus 14 ~~~vi~I~G~gGvGKTtLa~~vy~ 37 (156)
..+-+-|+|.+|+|||+||+.+++
T Consensus 50 ~~~~~ll~G~~GtGKT~la~~la~ 73 (285)
T 3h4m_A 50 PPKGILLYGPPGTGKTLLAKAVAT 73 (285)
T ss_dssp CCSEEEEESSSSSSHHHHHHHHHH
T ss_pred CCCeEEEECCCCCcHHHHHHHHHH
Confidence 345688999999999999999988
No 134
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=95.50 E-value=0.0074 Score=45.60 Aligned_cols=21 Identities=19% Similarity=0.297 Sum_probs=19.4
Q ss_pred EEEEcCCCccHHHHHHHHhcc
Q 035574 18 VAILDSIGLDKTAFTAEAYNS 38 (156)
Q Consensus 18 i~I~G~gGvGKTtLa~~vy~~ 38 (156)
+.|+|..|+|||||++.++..
T Consensus 52 ~ll~G~~G~GKTtl~~~i~~~ 72 (254)
T 1ixz_A 52 VLLVGPPGVGKTHLARAVAGE 72 (254)
T ss_dssp EEEECCTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 889999999999999999873
No 135
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=95.48 E-value=0.013 Score=45.97 Aligned_cols=21 Identities=14% Similarity=0.088 Sum_probs=19.2
Q ss_pred EEEEcCCCccHHHHHHHHhcc
Q 035574 18 VAILDSIGLDKTAFTAEAYNS 38 (156)
Q Consensus 18 i~I~G~gGvGKTtLa~~vy~~ 38 (156)
+-++|.+|+||||+|+.+.+.
T Consensus 61 ~ll~G~~G~GKT~la~~la~~ 81 (353)
T 1sxj_D 61 MLFYGPPGTGKTSTILALTKE 81 (353)
T ss_dssp EEEECSTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 789999999999999999873
No 136
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=95.48 E-value=0.048 Score=42.08 Aligned_cols=53 Identities=8% Similarity=0.043 Sum_probs=33.6
Q ss_pred CCcEEEEEEcCCCccHHHHHHHHhccccccccCc-eEEEEEcCCCCCHHHHHHHHHHH
Q 035574 13 TQLSVVAILDSIGLDKTAFTAEAYNSSYMKHYFD-YLAWIPAPYHYDPDQILDIVAVI 69 (156)
Q Consensus 13 ~~~~vi~I~G~gGvGKTtLa~~vy~~~~v~~~F~-~~~wv~vs~~~~~~~l~~~il~~ 69 (156)
..-.++.|.|.+|+|||||++.+.... ...-. .+.|+... .+..++.+.+...
T Consensus 33 ~~G~~~~i~G~~G~GKTTl~~~ia~~~--~~~~G~~v~~~~~e--~~~~~~~~r~~~~ 86 (296)
T 1cr0_A 33 RGGEVIMVTSGSGMGKSTFVRQQALQW--GTAMGKKVGLAMLE--ESVEETAEDLIGL 86 (296)
T ss_dssp CTTCEEEEEESTTSSHHHHHHHHHHHH--HHTSCCCEEEEESS--SCHHHHHHHHHHH
T ss_pred CCCeEEEEEeCCCCCHHHHHHHHHHHH--HHHcCCeEEEEeCc--CCHHHHHHHHHHH
Confidence 344689999999999999999987732 22212 35565543 3445555554443
No 137
>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*
Probab=95.47 E-value=0.012 Score=44.28 Aligned_cols=24 Identities=25% Similarity=0.279 Sum_probs=20.7
Q ss_pred CcEEEEEEcCCCccHHHHHHHHhc
Q 035574 14 QLSVVAILDSIGLDKTAFTAEAYN 37 (156)
Q Consensus 14 ~~~vi~I~G~gGvGKTtLa~~vy~ 37 (156)
...++.+.|.||+||||++..+..
T Consensus 13 ~~~i~~~~GkgGvGKTTl~~~La~ 36 (262)
T 1yrb_A 13 ASMIVVFVGTAGSGKTTLTGEFGR 36 (262)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHH
T ss_pred ceEEEEEeCCCCCCHHHHHHHHHH
Confidence 456778899999999999999874
No 138
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=95.47 E-value=0.0074 Score=44.74 Aligned_cols=22 Identities=9% Similarity=0.018 Sum_probs=19.8
Q ss_pred EEEEEEcCCCccHHHHHHHHhc
Q 035574 16 SVVAILDSIGLDKTAFTAEAYN 37 (156)
Q Consensus 16 ~vi~I~G~gGvGKTtLa~~vy~ 37 (156)
..|.+.|+.|+||||+|+.+..
T Consensus 6 ~~I~l~G~~GsGKsT~a~~La~ 27 (217)
T 3be4_A 6 HNLILIGAPGSGKGTQCEFIKK 27 (217)
T ss_dssp CEEEEEECTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4688999999999999999876
No 139
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=95.46 E-value=0.006 Score=44.28 Aligned_cols=23 Identities=13% Similarity=0.182 Sum_probs=19.9
Q ss_pred cEEEEEEcCCCccHHHHHHHHhc
Q 035574 15 LSVVAILDSIGLDKTAFTAEAYN 37 (156)
Q Consensus 15 ~~vi~I~G~gGvGKTtLa~~vy~ 37 (156)
..++.|+|..|.|||||++.+..
T Consensus 2 ~~~v~IvG~SGsGKSTL~~~L~~ 24 (171)
T 2f1r_A 2 SLILSIVGTSDSGKTTLITRMMP 24 (171)
T ss_dssp -CEEEEEESCHHHHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHH
Confidence 35789999999999999998865
No 140
>2afh_E Nitrogenase iron protein 1; nitrogen fixation, iron-sulfur, metal-binding, molybdenum, oxidoreductase; HET: HCA CFN CLF PGE PG4 P6G 1PE; 2.10A {Azotobacter vinelandii} SCOP: c.37.1.10 PDB: 1g1m_A 1g5p_A 1m1y_E* 1m34_E* 1n2c_E* 1nip_A* 1fp6_A* 2afi_E* 2afk_E* 2nip_A 1de0_A 1xcp_A* 1xdb_A 1xd8_A 1xd9_A* 1g20_E* 1g21_E* 2c8v_A* 1rw4_A
Probab=95.46 E-value=0.01 Score=45.79 Aligned_cols=23 Identities=22% Similarity=0.239 Sum_probs=19.6
Q ss_pred cEEEEEEcCCCccHHHHHHHHhc
Q 035574 15 LSVVAILDSIGLDKTAFTAEAYN 37 (156)
Q Consensus 15 ~~vi~I~G~gGvGKTtLa~~vy~ 37 (156)
+++|+|.|-||+||||+|..+..
T Consensus 2 MkvIavs~KGGvGKTT~a~nLA~ 24 (289)
T 2afh_E 2 MRQCAIYGKGGIGKSTTTQNLVA 24 (289)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHH
T ss_pred ceEEEEeCCCcCcHHHHHHHHHH
Confidence 57888999999999998887654
No 141
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=95.46 E-value=0.011 Score=42.30 Aligned_cols=25 Identities=20% Similarity=0.259 Sum_probs=21.7
Q ss_pred CCcEEEEEEcCCCccHHHHHHHHhc
Q 035574 13 TQLSVVAILDSIGLDKTAFTAEAYN 37 (156)
Q Consensus 13 ~~~~vi~I~G~gGvGKTtLa~~vy~ 37 (156)
..-.+++++|..|.|||||++.+..
T Consensus 31 ~~Ge~v~L~G~nGaGKTTLlr~l~g 55 (158)
T 1htw_A 31 EKAIMVYLNGDLGAGKTTLTRGMLQ 55 (158)
T ss_dssp SSCEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHH
Confidence 4457899999999999999998866
No 142
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=95.45 E-value=0.013 Score=40.99 Aligned_cols=23 Identities=9% Similarity=0.137 Sum_probs=20.4
Q ss_pred EEEEEEcCCCccHHHHHHHHhcc
Q 035574 16 SVVAILDSIGLDKTAFTAEAYNS 38 (156)
Q Consensus 16 ~vi~I~G~gGvGKTtLa~~vy~~ 38 (156)
..+.++|.+|+|||||...+...
T Consensus 4 ~~v~lvG~~gvGKStL~~~l~~~ 26 (165)
T 2wji_A 4 YEIALIGNPNVGKSTIFNALTGE 26 (165)
T ss_dssp EEEEEECSTTSSHHHHHHHHHCC
T ss_pred cEEEEECCCCCCHHHHHHHHhCC
Confidence 46899999999999999998763
No 143
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=95.45 E-value=0.008 Score=45.51 Aligned_cols=23 Identities=17% Similarity=0.160 Sum_probs=20.1
Q ss_pred EEEEEEcCCCccHHHHHHHHhcc
Q 035574 16 SVVAILDSIGLDKTAFTAEAYNS 38 (156)
Q Consensus 16 ~vi~I~G~gGvGKTtLa~~vy~~ 38 (156)
+-+-++|.+|+||||||+.+.+.
T Consensus 46 ~~vll~G~~GtGKT~la~~la~~ 68 (257)
T 1lv7_A 46 KGVLMVGPPGTGKTLLAKAIAGE 68 (257)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHH
T ss_pred CeEEEECcCCCCHHHHHHHHHHH
Confidence 34779999999999999999873
No 144
>1cp2_A CP2, nitrogenase iron protein; oxidoreductase; 1.93A {Clostridium pasteurianum} SCOP: c.37.1.10
Probab=95.44 E-value=0.01 Score=45.10 Aligned_cols=22 Identities=27% Similarity=0.265 Sum_probs=18.9
Q ss_pred EEEEEEcCCCccHHHHHHHHhc
Q 035574 16 SVVAILDSIGLDKTAFTAEAYN 37 (156)
Q Consensus 16 ~vi~I~G~gGvGKTtLa~~vy~ 37 (156)
++|+|.|-||+||||+|..+..
T Consensus 2 ~vI~vs~KGGvGKTT~a~nLA~ 23 (269)
T 1cp2_A 2 RQVAIYGKGGIGKSTTTQNLTS 23 (269)
T ss_dssp EEEEEEECTTSSHHHHHHHHHH
T ss_pred cEEEEecCCCCcHHHHHHHHHH
Confidence 6788899999999998887654
No 145
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=95.44 E-value=0.0086 Score=44.60 Aligned_cols=24 Identities=4% Similarity=0.227 Sum_probs=21.5
Q ss_pred CcEEEEEEcCCCccHHHHHHHHhc
Q 035574 14 QLSVVAILDSIGLDKTAFTAEAYN 37 (156)
Q Consensus 14 ~~~vi~I~G~gGvGKTtLa~~vy~ 37 (156)
..+++.|+|..|+|||||++.+..
T Consensus 18 ~g~~ivl~GPSGaGKsTL~~~L~~ 41 (197)
T 3ney_A 18 GRKTLVLIGASGVGRSHIKNALLS 41 (197)
T ss_dssp SCCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCCEEEEECcCCCCHHHHHHHHHh
Confidence 457899999999999999999876
No 146
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=95.43 E-value=0.0095 Score=46.07 Aligned_cols=22 Identities=14% Similarity=0.285 Sum_probs=20.1
Q ss_pred EEEEEEcCCCccHHHHHHHHhc
Q 035574 16 SVVAILDSIGLDKTAFTAEAYN 37 (156)
Q Consensus 16 ~vi~I~G~gGvGKTtLa~~vy~ 37 (156)
.+|.|.|++|+||||+|+.+..
T Consensus 3 ~~I~l~G~~GsGKST~a~~L~~ 24 (301)
T 1ltq_A 3 KIILTIGCPGSGKSTWAREFIA 24 (301)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 5789999999999999999876
No 147
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=95.42 E-value=0.017 Score=47.96 Aligned_cols=24 Identities=21% Similarity=0.112 Sum_probs=21.1
Q ss_pred CcEEEEEEcCCCccHHHHHHHHhc
Q 035574 14 QLSVVAILDSIGLDKTAFTAEAYN 37 (156)
Q Consensus 14 ~~~vi~I~G~gGvGKTtLa~~vy~ 37 (156)
..++|.++|.+|+||||++..+..
T Consensus 99 ~~~vI~ivG~~GvGKTT~a~~LA~ 122 (433)
T 2xxa_A 99 PPAVVLMAGLQGAGKTTSVGKLGK 122 (433)
T ss_dssp SSEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 468999999999999999888764
No 148
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=95.42 E-value=0.011 Score=46.56 Aligned_cols=25 Identities=12% Similarity=0.130 Sum_probs=22.2
Q ss_pred CCcEEEEEEcCCCccHHHHHHHHhc
Q 035574 13 TQLSVVAILDSIGLDKTAFTAEAYN 37 (156)
Q Consensus 13 ~~~~vi~I~G~gGvGKTtLa~~vy~ 37 (156)
....+++|.|..|.|||||++.+..
T Consensus 78 ~~g~iigI~G~~GsGKSTl~~~L~~ 102 (308)
T 1sq5_A 78 RIPYIISIAGSVAVGKSTTARVLQA 102 (308)
T ss_dssp CCCEEEEEEECTTSSHHHHHHHHHH
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHH
Confidence 4457999999999999999999876
No 149
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=95.39 E-value=0.0087 Score=44.15 Aligned_cols=21 Identities=10% Similarity=-0.032 Sum_probs=18.9
Q ss_pred EEEEEcCCCccHHHHHHHHhc
Q 035574 17 VVAILDSIGLDKTAFTAEAYN 37 (156)
Q Consensus 17 vi~I~G~gGvGKTtLa~~vy~ 37 (156)
.|.|.|+.|+||||+|+.+..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~ 22 (214)
T 1e4v_A 2 RIILLGAPVAGKGTQAQFIME 22 (214)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 378999999999999999876
No 150
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=95.39 E-value=0.012 Score=46.52 Aligned_cols=24 Identities=21% Similarity=0.171 Sum_probs=21.3
Q ss_pred CcEEEEEEcCCCccHHHHHHHHhc
Q 035574 14 QLSVVAILDSIGLDKTAFTAEAYN 37 (156)
Q Consensus 14 ~~~vi~I~G~gGvGKTtLa~~vy~ 37 (156)
...++.++|..|+||||+++.+..
T Consensus 99 ~g~vi~lvG~nGsGKTTll~~Lag 122 (302)
T 3b9q_A 99 KPAVIMIVGVNGGGKTTSLGKLAH 122 (302)
T ss_dssp SCEEEEEECCTTSCHHHHHHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHH
Confidence 347999999999999999998876
No 151
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=95.39 E-value=0.0026 Score=44.30 Aligned_cols=22 Identities=9% Similarity=-0.059 Sum_probs=19.4
Q ss_pred EEEEEcCCCccHHHHHHHHhcc
Q 035574 17 VVAILDSIGLDKTAFTAEAYNS 38 (156)
Q Consensus 17 vi~I~G~gGvGKTtLa~~vy~~ 38 (156)
-+-|+|..|+|||++|+.+++.
T Consensus 29 ~vll~G~~GtGKt~lA~~i~~~ 50 (143)
T 3co5_A 29 PVFLTGEAGSPFETVARYFHKN 50 (143)
T ss_dssp CEEEEEETTCCHHHHHGGGCCT
T ss_pred cEEEECCCCccHHHHHHHHHHh
Confidence 3668999999999999999874
No 152
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=95.36 E-value=0.0073 Score=46.48 Aligned_cols=23 Identities=13% Similarity=0.057 Sum_probs=20.6
Q ss_pred cEEEEEEcCCCccHHHHHHHHhc
Q 035574 15 LSVVAILDSIGLDKTAFTAEAYN 37 (156)
Q Consensus 15 ~~vi~I~G~gGvGKTtLa~~vy~ 37 (156)
-..|.|+|+.|.||||+++.+..
T Consensus 48 g~~i~l~G~~GsGKSTl~~~La~ 70 (250)
T 3nwj_A 48 GRSMYLVGMMGSGKTTVGKIMAR 70 (250)
T ss_dssp TCCEEEECSTTSCHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHH
Confidence 35799999999999999999876
No 153
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=95.36 E-value=0.013 Score=40.27 Aligned_cols=23 Identities=13% Similarity=0.182 Sum_probs=20.1
Q ss_pred EEEEEEcCCCccHHHHHHHHhcc
Q 035574 16 SVVAILDSIGLDKTAFTAEAYNS 38 (156)
Q Consensus 16 ~vi~I~G~gGvGKTtLa~~vy~~ 38 (156)
.-|.++|.+|+|||||...+.+.
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~~ 24 (161)
T 2dyk_A 2 HKVVIVGRPNVGKSSLFNRLLKK 24 (161)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHC
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 45789999999999999998764
No 154
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=95.35 E-value=0.01 Score=44.70 Aligned_cols=24 Identities=13% Similarity=0.156 Sum_probs=21.4
Q ss_pred CcEEEEEEcCCCccHHHHHHHHhc
Q 035574 14 QLSVVAILDSIGLDKTAFTAEAYN 37 (156)
Q Consensus 14 ~~~vi~I~G~gGvGKTtLa~~vy~ 37 (156)
.-.++.|+|..|+|||||.+.+..
T Consensus 15 ~G~ii~l~GpsGsGKSTLlk~L~g 38 (219)
T 1s96_A 15 QGTLYIVSAPSGAGKSSLIQALLK 38 (219)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHhc
Confidence 457899999999999999999876
No 155
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=95.35 E-value=0.01 Score=46.69 Aligned_cols=24 Identities=21% Similarity=0.224 Sum_probs=21.1
Q ss_pred CcEEEEEEcCCCccHHHHHHHHhc
Q 035574 14 QLSVVAILDSIGLDKTAFTAEAYN 37 (156)
Q Consensus 14 ~~~vi~I~G~gGvGKTtLa~~vy~ 37 (156)
...++.++|.+|+||||++..+..
T Consensus 104 ~g~vi~lvG~~GsGKTTl~~~LA~ 127 (296)
T 2px0_A 104 HSKYIVLFGSTGAGKTTTLAKLAA 127 (296)
T ss_dssp CSSEEEEEESTTSSHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 457999999999999999998865
No 156
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=95.34 E-value=0.01 Score=45.91 Aligned_cols=25 Identities=16% Similarity=0.104 Sum_probs=20.8
Q ss_pred CCcEEEEEEcCCCccHHHHHHHHhc
Q 035574 13 TQLSVVAILDSIGLDKTAFTAEAYN 37 (156)
Q Consensus 13 ~~~~vi~I~G~gGvGKTtLa~~vy~ 37 (156)
.....+-++|.+|+|||+||+.+.+
T Consensus 65 ~~~~~vll~G~~GtGKT~la~~la~ 89 (309)
T 3syl_A 65 TPTLHMSFTGNPGTGKTTVALKMAG 89 (309)
T ss_dssp CCCCEEEEEECTTSSHHHHHHHHHH
T ss_pred CCCceEEEECCCCCCHHHHHHHHHH
Confidence 3445688999999999999997766
No 157
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=95.34 E-value=0.0092 Score=46.62 Aligned_cols=24 Identities=21% Similarity=0.117 Sum_probs=21.4
Q ss_pred CcEEEEEEcCCCccHHHHHHHHhc
Q 035574 14 QLSVVAILDSIGLDKTAFTAEAYN 37 (156)
Q Consensus 14 ~~~vi~I~G~gGvGKTtLa~~vy~ 37 (156)
..+.+-++|.+|+|||+||+.+++
T Consensus 48 ~~~~vLL~Gp~GtGKT~la~ala~ 71 (301)
T 3cf0_A 48 PSKGVLFYGPPGCGKTLLAKAIAN 71 (301)
T ss_dssp CCSEEEEECSSSSSHHHHHHHHHH
T ss_pred CCceEEEECCCCcCHHHHHHHHHH
Confidence 346788999999999999999988
No 158
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=95.34 E-value=0.014 Score=46.63 Aligned_cols=26 Identities=15% Similarity=0.230 Sum_probs=22.3
Q ss_pred CCCcEEEEEEcCCCccHHHHHHHHhc
Q 035574 12 PTQLSVVAILDSIGLDKTAFTAEAYN 37 (156)
Q Consensus 12 ~~~~~vi~I~G~gGvGKTtLa~~vy~ 37 (156)
.....+++|.|..|.|||||++.+..
T Consensus 89 ~~~p~iigI~GpsGSGKSTl~~~L~~ 114 (321)
T 3tqc_A 89 PKVPYIIGIAGSVAVGKSTTSRVLKA 114 (321)
T ss_dssp CCCCEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHH
Confidence 34567999999999999999998855
No 159
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=95.32 E-value=0.011 Score=44.26 Aligned_cols=23 Identities=13% Similarity=0.040 Sum_probs=20.6
Q ss_pred cEEEEEEcCCCccHHHHHHHHhc
Q 035574 15 LSVVAILDSIGLDKTAFTAEAYN 37 (156)
Q Consensus 15 ~~vi~I~G~gGvGKTtLa~~vy~ 37 (156)
...|.+.|+.|+||||+|+.+.+
T Consensus 16 ~~~I~l~G~~GsGKsT~a~~La~ 38 (233)
T 1ak2_A 16 GVRAVLLGPPGAGKGTQAPKLAK 38 (233)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 45789999999999999999977
No 160
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=95.30 E-value=0.011 Score=44.17 Aligned_cols=21 Identities=14% Similarity=0.067 Sum_probs=19.0
Q ss_pred EEEEEcCCCccHHHHHHHHhc
Q 035574 17 VVAILDSIGLDKTAFTAEAYN 37 (156)
Q Consensus 17 vi~I~G~gGvGKTtLa~~vy~ 37 (156)
.|.|.|+.|+||||+++.+..
T Consensus 2 ~I~l~G~~GsGKsT~a~~La~ 22 (223)
T 2xb4_A 2 NILIFGPNGSGKGTQGNLVKD 22 (223)
T ss_dssp EEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 478999999999999999876
No 161
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=95.29 E-value=0.0092 Score=43.91 Aligned_cols=21 Identities=24% Similarity=0.264 Sum_probs=19.0
Q ss_pred EEEEEcCCCccHHHHHHHHhc
Q 035574 17 VVAILDSIGLDKTAFTAEAYN 37 (156)
Q Consensus 17 vi~I~G~gGvGKTtLa~~vy~ 37 (156)
++.|+|..|+|||||++.+..
T Consensus 3 ~i~i~G~nG~GKTTll~~l~g 23 (189)
T 2i3b_A 3 HVFLTGPPGVGKTTLIHKASE 23 (189)
T ss_dssp CEEEESCCSSCHHHHHHHHHH
T ss_pred EEEEECCCCChHHHHHHHHHh
Confidence 589999999999999998876
No 162
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=95.29 E-value=0.023 Score=44.78 Aligned_cols=24 Identities=13% Similarity=0.201 Sum_probs=21.3
Q ss_pred cEEEEEEcCCCccHHHHHHHHhcc
Q 035574 15 LSVVAILDSIGLDKTAFTAEAYNS 38 (156)
Q Consensus 15 ~~vi~I~G~gGvGKTtLa~~vy~~ 38 (156)
...+-++|..|+|||+||..+++.
T Consensus 152 ~~~lll~G~~GtGKT~La~aia~~ 175 (308)
T 2qgz_A 152 QKGLYLYGDMGIGKSYLLAAMAHE 175 (308)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHHHHHH
Confidence 467889999999999999999883
No 163
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=95.28 E-value=0.0066 Score=45.34 Aligned_cols=21 Identities=14% Similarity=0.251 Sum_probs=15.9
Q ss_pred EEEEEEcCCCccHHHHHHHHh
Q 035574 16 SVVAILDSIGLDKTAFTAEAY 36 (156)
Q Consensus 16 ~vi~I~G~gGvGKTtLa~~vy 36 (156)
.+++|+|..|.|||||++.+.
T Consensus 28 ~ii~l~Gp~GsGKSTl~~~L~ 48 (231)
T 3lnc_A 28 VILVLSSPSGCGKTTVANKLL 48 (231)
T ss_dssp CEEEEECSCC----CHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHH
Confidence 689999999999999999998
No 164
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=95.28 E-value=0.0096 Score=46.14 Aligned_cols=20 Identities=25% Similarity=0.257 Sum_probs=19.2
Q ss_pred EEEEcCCCccHHHHHHHHhc
Q 035574 18 VAILDSIGLDKTAFTAEAYN 37 (156)
Q Consensus 18 i~I~G~gGvGKTtLa~~vy~ 37 (156)
+.++|.+|.|||||++.+..
T Consensus 47 vlL~Gp~GtGKTtLakala~ 66 (274)
T 2x8a_A 47 VLLAGPPGCGKTLLAKAVAN 66 (274)
T ss_dssp EEEESSTTSCHHHHHHHHHH
T ss_pred EEEECCCCCcHHHHHHHHHH
Confidence 89999999999999999987
No 165
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=95.25 E-value=0.01 Score=45.74 Aligned_cols=23 Identities=13% Similarity=0.111 Sum_probs=20.8
Q ss_pred cEEEEEEcCCCccHHHHHHHHhc
Q 035574 15 LSVVAILDSIGLDKTAFTAEAYN 37 (156)
Q Consensus 15 ~~vi~I~G~gGvGKTtLa~~vy~ 37 (156)
.+.+-++|.+|+|||+||+.+++
T Consensus 54 ~~~vll~Gp~GtGKT~la~~la~ 76 (297)
T 3b9p_A 54 AKGLLLFGPPGNGKTLLARAVAT 76 (297)
T ss_dssp CSEEEEESSSSSCHHHHHHHHHH
T ss_pred CCeEEEECcCCCCHHHHHHHHHH
Confidence 45778999999999999999988
No 166
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=95.25 E-value=0.012 Score=42.57 Aligned_cols=24 Identities=17% Similarity=0.272 Sum_probs=21.1
Q ss_pred cEEEEEEcCCCccHHHHHHHHhcc
Q 035574 15 LSVVAILDSIGLDKTAFTAEAYNS 38 (156)
Q Consensus 15 ~~vi~I~G~gGvGKTtLa~~vy~~ 38 (156)
.-.+.|+|..|+|||||.+.+...
T Consensus 29 ~~kv~lvG~~g~GKSTLl~~l~~~ 52 (191)
T 1oix_A 29 LFKVVLIGDSGVGKSNLLSRFTRN 52 (191)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHHS
T ss_pred ceEEEEECcCCCCHHHHHHHHhcC
Confidence 457899999999999999998764
No 167
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=95.23 E-value=0.011 Score=42.27 Aligned_cols=22 Identities=18% Similarity=0.299 Sum_probs=19.5
Q ss_pred EEEEEcCCCccHHHHHHHHhcc
Q 035574 17 VVAILDSIGLDKTAFTAEAYNS 38 (156)
Q Consensus 17 vi~I~G~gGvGKTtLa~~vy~~ 38 (156)
-|.|+|.+|+|||||...+...
T Consensus 4 kv~ivG~~gvGKStLl~~l~~~ 25 (184)
T 2zej_A 4 KLMIVGNTGSGKTTLLQQLMKT 25 (184)
T ss_dssp EEEEESCTTSSHHHHHHHHTCC
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4789999999999999998773
No 168
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=95.23 E-value=0.012 Score=44.88 Aligned_cols=22 Identities=18% Similarity=0.256 Sum_probs=20.5
Q ss_pred EEEEEEcCCCccHHHHHHHHhc
Q 035574 16 SVVAILDSIGLDKTAFTAEAYN 37 (156)
Q Consensus 16 ~vi~I~G~gGvGKTtLa~~vy~ 37 (156)
.+++|+|..|.|||||.+.+..
T Consensus 25 e~~~liG~nGsGKSTLl~~l~G 46 (240)
T 2onk_A 25 DYCVLLGPTGAGKSVFLELIAG 46 (240)
T ss_dssp SEEEEECCTTSSHHHHHHHHHT
T ss_pred EEEEEECCCCCCHHHHHHHHhC
Confidence 7899999999999999999876
No 169
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=95.22 E-value=0.018 Score=43.66 Aligned_cols=23 Identities=17% Similarity=0.128 Sum_probs=20.1
Q ss_pred EEEEEEcCCCccHHHHHHHHhcc
Q 035574 16 SVVAILDSIGLDKTAFTAEAYNS 38 (156)
Q Consensus 16 ~vi~I~G~gGvGKTtLa~~vy~~ 38 (156)
..+-|+|..|+|||+||+.+++.
T Consensus 30 ~~vll~G~~GtGKt~la~~i~~~ 52 (265)
T 2bjv_A 30 KPVLIIGERGTGKELIASRLHYL 52 (265)
T ss_dssp SCEEEECCTTSCHHHHHHHHHHT
T ss_pred CCEEEECCCCCcHHHHHHHHHHh
Confidence 45678999999999999999883
No 170
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=95.20 E-value=0.012 Score=42.80 Aligned_cols=23 Identities=17% Similarity=0.205 Sum_probs=20.8
Q ss_pred cEEEEEEcCCCccHHHHHHHHhc
Q 035574 15 LSVVAILDSIGLDKTAFTAEAYN 37 (156)
Q Consensus 15 ~~vi~I~G~gGvGKTtLa~~vy~ 37 (156)
..++.|+|..|+|||||++.+..
T Consensus 6 ~~~i~i~G~sGsGKTTl~~~l~~ 28 (174)
T 1np6_A 6 IPLLAFAAWSGTGKTTLLKKLIP 28 (174)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHH
T ss_pred ceEEEEEeCCCCCHHHHHHHHHH
Confidence 57899999999999999998876
No 171
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=95.20 E-value=0.039 Score=44.27 Aligned_cols=49 Identities=12% Similarity=0.255 Sum_probs=32.4
Q ss_pred CCcEEEEEEcCCCccHHHHHHHHhccccccccC---ce-EEEEEcCCCCCHHH
Q 035574 13 TQLSVVAILDSIGLDKTAFTAEAYNSSYMKHYF---DY-LAWIPAPYHYDPDQ 61 (156)
Q Consensus 13 ~~~~vi~I~G~gGvGKTtLa~~vy~~~~v~~~F---~~-~~wv~vs~~~~~~~ 61 (156)
..-.++.|+|..|.|||||+.++.......... .. .+|+.....+...+
T Consensus 129 ~~G~i~~I~G~~GsGKTTL~~~l~~~~~~~~~~Gg~~G~vi~i~~e~~~~~~~ 181 (349)
T 1pzn_A 129 ETQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTENTFRPER 181 (349)
T ss_dssp ESSEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTSCSCEEEEEESSSCCCHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhccchhcCCCCCeEEEEeCCCCCCHHH
Confidence 345799999999999999999987632112111 22 47887655554433
No 172
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=95.20 E-value=0.011 Score=45.53 Aligned_cols=21 Identities=19% Similarity=0.297 Sum_probs=19.3
Q ss_pred EEEEcCCCccHHHHHHHHhcc
Q 035574 18 VAILDSIGLDKTAFTAEAYNS 38 (156)
Q Consensus 18 i~I~G~gGvGKTtLa~~vy~~ 38 (156)
+.|+|..|+|||||++.+...
T Consensus 76 vll~Gp~GtGKTtl~~~i~~~ 96 (278)
T 1iy2_A 76 VLLVGPPGVGKTHLARAVAGE 96 (278)
T ss_dssp EEEECCTTSSHHHHHHHHHHH
T ss_pred EEEECCCcChHHHHHHHHHHH
Confidence 889999999999999999873
No 173
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=95.19 E-value=0.012 Score=43.09 Aligned_cols=24 Identities=25% Similarity=0.210 Sum_probs=21.1
Q ss_pred CcEEEEEEcCCCccHHHHHHHHhc
Q 035574 14 QLSVVAILDSIGLDKTAFTAEAYN 37 (156)
Q Consensus 14 ~~~vi~I~G~gGvGKTtLa~~vy~ 37 (156)
.-.++.|.|..|.|||||++.+..
T Consensus 22 ~G~~~~i~G~~GsGKTtl~~~l~~ 45 (235)
T 2w0m_A 22 QGFFIALTGEPGTGKTIFSLHFIA 45 (235)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHHH
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHH
Confidence 346889999999999999999875
No 174
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=95.17 E-value=0.015 Score=43.79 Aligned_cols=25 Identities=16% Similarity=0.189 Sum_probs=22.6
Q ss_pred CCcEEEEEEcCCCccHHHHHHHHhc
Q 035574 13 TQLSVVAILDSIGLDKTAFTAEAYN 37 (156)
Q Consensus 13 ~~~~vi~I~G~gGvGKTtLa~~vy~ 37 (156)
...++|-|.|.+|+||+|.|+.+.+
T Consensus 27 ~k~kiI~llGpPGsGKgTqa~~L~~ 51 (217)
T 3umf_A 27 AKAKVIFVLGGPGSGKGTQCEKLVQ 51 (217)
T ss_dssp TSCEEEEEECCTTCCHHHHHHHHHH
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHH
Confidence 5678999999999999999999877
No 175
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=95.15 E-value=0.015 Score=39.75 Aligned_cols=22 Identities=18% Similarity=0.342 Sum_probs=19.3
Q ss_pred EEEEEcCCCccHHHHHHHHhcc
Q 035574 17 VVAILDSIGLDKTAFTAEAYNS 38 (156)
Q Consensus 17 vi~I~G~gGvGKTtLa~~vy~~ 38 (156)
-|.++|.+|+|||||...+..+
T Consensus 5 ~i~v~G~~~~GKssl~~~l~~~ 26 (166)
T 2ce2_X 5 KLVVVGAGGVGKSALTIQLIQN 26 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 4789999999999999998764
No 176
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=95.15 E-value=0.012 Score=44.24 Aligned_cols=23 Identities=17% Similarity=0.062 Sum_probs=20.6
Q ss_pred cEEEEEEcCCCccHHHHHHHHhc
Q 035574 15 LSVVAILDSIGLDKTAFTAEAYN 37 (156)
Q Consensus 15 ~~vi~I~G~gGvGKTtLa~~vy~ 37 (156)
-.+++|+|..|.|||||.+.+..
T Consensus 30 Ge~~~iiG~nGsGKSTLl~~l~G 52 (224)
T 2pcj_A 30 GEFVSIIGASGSGKSTLLYILGL 52 (224)
T ss_dssp TCEEEEEECTTSCHHHHHHHHTT
T ss_pred CCEEEEECCCCCCHHHHHHHHhc
Confidence 35789999999999999999876
No 177
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=95.15 E-value=0.012 Score=46.24 Aligned_cols=23 Identities=13% Similarity=0.128 Sum_probs=20.7
Q ss_pred cEEEEEEcCCCccHHHHHHHHhc
Q 035574 15 LSVVAILDSIGLDKTAFTAEAYN 37 (156)
Q Consensus 15 ~~vi~I~G~gGvGKTtLa~~vy~ 37 (156)
.+-+-++|.+|+|||+||+.+++
T Consensus 51 ~~~vLl~GppGtGKT~la~aia~ 73 (322)
T 3eie_A 51 TSGILLYGPPGTGKSYLAKAVAT 73 (322)
T ss_dssp CCEEEEECSSSSCHHHHHHHHHH
T ss_pred CCeEEEECCCCCcHHHHHHHHHH
Confidence 45678999999999999999988
No 178
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=95.14 E-value=0.023 Score=39.72 Aligned_cols=25 Identities=24% Similarity=0.303 Sum_probs=21.4
Q ss_pred CcEEEEEEcCCCccHHHHHHHHhcc
Q 035574 14 QLSVVAILDSIGLDKTAFTAEAYNS 38 (156)
Q Consensus 14 ~~~vi~I~G~gGvGKTtLa~~vy~~ 38 (156)
....|.++|..|+|||||...+.++
T Consensus 7 ~~~~i~v~G~~~~GKssl~~~l~~~ 31 (178)
T 2lkc_A 7 RPPVVTIMGHVDHGKTTLLDAIRHS 31 (178)
T ss_dssp CCCEEEEESCTTTTHHHHHHHHHTT
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 4567899999999999999998764
No 179
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=95.13 E-value=0.013 Score=44.52 Aligned_cols=23 Identities=17% Similarity=0.096 Sum_probs=20.8
Q ss_pred cEEEEEEcCCCccHHHHHHHHhc
Q 035574 15 LSVVAILDSIGLDKTAFTAEAYN 37 (156)
Q Consensus 15 ~~vi~I~G~gGvGKTtLa~~vy~ 37 (156)
-.+++|+|..|.|||||.+.+..
T Consensus 31 Ge~~~iiG~nGsGKSTLl~~l~G 53 (235)
T 3tif_A 31 GEFVSIMGPSGSGKSTMLNIIGC 53 (235)
T ss_dssp TCEEEEECSTTSSHHHHHHHHTT
T ss_pred CCEEEEECCCCCcHHHHHHHHhc
Confidence 46889999999999999999876
No 180
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=95.12 E-value=0.016 Score=45.92 Aligned_cols=24 Identities=17% Similarity=0.130 Sum_probs=21.3
Q ss_pred CcEEEEEEcCCCccHHHHHHHHhc
Q 035574 14 QLSVVAILDSIGLDKTAFTAEAYN 37 (156)
Q Consensus 14 ~~~vi~I~G~gGvGKTtLa~~vy~ 37 (156)
...++.|+|.+|+||||++..+..
T Consensus 103 ~~~vi~ivG~~GsGKTTl~~~LA~ 126 (306)
T 1vma_A 103 PPFVIMVVGVNGTGKTTSCGKLAK 126 (306)
T ss_dssp SCEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCeEEEEEcCCCChHHHHHHHHHH
Confidence 457999999999999999998866
No 181
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=95.11 E-value=0.025 Score=45.51 Aligned_cols=45 Identities=22% Similarity=0.186 Sum_probs=31.2
Q ss_pred CCcEEEEEEcCCCccHHHHHHHHhccccccccCceEEEEEcCCCCCH
Q 035574 13 TQLSVVAILDSIGLDKTAFTAEAYNSSYMKHYFDYLAWIPAPYHYDP 59 (156)
Q Consensus 13 ~~~~vi~I~G~gGvGKTtLa~~vy~~~~v~~~F~~~~wv~vs~~~~~ 59 (156)
..-+++.|.|.+|+||||||.++.... ...=...+|++....++.
T Consensus 59 ~~G~iv~I~G~pGsGKTtLal~la~~~--~~~g~~vlyi~~E~~~~~ 103 (349)
T 2zr9_A 59 PRGRVIEIYGPESSGKTTVALHAVANA--QAAGGIAAFIDAEHALDP 103 (349)
T ss_dssp ETTSEEEEEESTTSSHHHHHHHHHHHH--HHTTCCEEEEESSCCCCH
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHHH--HhCCCeEEEEECCCCcCH
Confidence 345789999999999999999987522 211124677777665553
No 182
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=95.09 E-value=0.014 Score=43.72 Aligned_cols=25 Identities=12% Similarity=0.011 Sum_probs=21.4
Q ss_pred CCcEEEEEEcCCCccHHHHHHHHhc
Q 035574 13 TQLSVVAILDSIGLDKTAFTAEAYN 37 (156)
Q Consensus 13 ~~~~vi~I~G~gGvGKTtLa~~vy~ 37 (156)
....+|+|.|+.|.||||+++.+..
T Consensus 14 ~~~~~i~i~G~~gsGKst~~~~l~~ 38 (236)
T 1q3t_A 14 MKTIQIAIDGPASSGKSTVAKIIAK 38 (236)
T ss_dssp CCCCEEEEECSSCSSHHHHHHHHHH
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHH
Confidence 4456899999999999999998765
No 183
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=95.09 E-value=0.0078 Score=46.79 Aligned_cols=23 Identities=22% Similarity=0.300 Sum_probs=20.6
Q ss_pred cEEEEEEcCCCccHHHHHHHHhc
Q 035574 15 LSVVAILDSIGLDKTAFTAEAYN 37 (156)
Q Consensus 15 ~~vi~I~G~gGvGKTtLa~~vy~ 37 (156)
...+-|+|.+|+|||+||+.+++
T Consensus 38 ~~~vll~G~~GtGKT~la~~i~~ 60 (324)
T 1hqc_A 38 LEHLLLFGPPGLGKTTLAHVIAH 60 (324)
T ss_dssp CCCCEEECCTTCCCHHHHHHHHH
T ss_pred CCcEEEECCCCCCHHHHHHHHHH
Confidence 45678999999999999999987
No 184
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=95.08 E-value=0.013 Score=42.44 Aligned_cols=24 Identities=17% Similarity=0.272 Sum_probs=20.9
Q ss_pred cEEEEEEcCCCccHHHHHHHHhcc
Q 035574 15 LSVVAILDSIGLDKTAFTAEAYNS 38 (156)
Q Consensus 15 ~~vi~I~G~gGvGKTtLa~~vy~~ 38 (156)
...+.|+|..|+|||||.+.+...
T Consensus 5 ~~kv~lvG~~g~GKSTLl~~l~~~ 28 (199)
T 2f9l_A 5 LFKVVLIGDSGVGKSNLLSRFTRN 28 (199)
T ss_dssp EEEEEEESSTTSSHHHHHHHHHHS
T ss_pred eEEEEEECcCCCCHHHHHHHHhcC
Confidence 356799999999999999998774
No 185
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=95.08 E-value=0.015 Score=41.17 Aligned_cols=24 Identities=8% Similarity=0.102 Sum_probs=21.0
Q ss_pred cEEEEEEcCCCccHHHHHHHHhcc
Q 035574 15 LSVVAILDSIGLDKTAFTAEAYNS 38 (156)
Q Consensus 15 ~~vi~I~G~gGvGKTtLa~~vy~~ 38 (156)
...|.++|..|+|||||...+...
T Consensus 7 ~~~i~lvG~~gvGKStL~~~l~~~ 30 (188)
T 2wjg_A 7 SYEIALIGNPNVGKSTIFNALTGE 30 (188)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHTT
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 357899999999999999999874
No 186
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=95.08 E-value=0.015 Score=40.56 Aligned_cols=23 Identities=22% Similarity=0.242 Sum_probs=20.1
Q ss_pred EEEEEEcCCCccHHHHHHHHhcc
Q 035574 16 SVVAILDSIGLDKTAFTAEAYNS 38 (156)
Q Consensus 16 ~vi~I~G~gGvGKTtLa~~vy~~ 38 (156)
--|.|+|.+|+|||||...+.+.
T Consensus 5 ~ki~i~G~~~vGKSsl~~~l~~~ 27 (175)
T 2nzj_A 5 YRVVLLGDPGVGKTSLASLFAGK 27 (175)
T ss_dssp EEEEEECCTTSSHHHHHHHHHCC
T ss_pred EEEEEECCCCccHHHHHHHHhcC
Confidence 45789999999999999998764
No 187
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=95.04 E-value=0.017 Score=48.07 Aligned_cols=23 Identities=17% Similarity=0.195 Sum_probs=21.0
Q ss_pred cEEEEEEcCCCccHHHHHHHHhc
Q 035574 15 LSVVAILDSIGLDKTAFTAEAYN 37 (156)
Q Consensus 15 ~~vi~I~G~gGvGKTtLa~~vy~ 37 (156)
...+-++|.+|+||||||+.+.+
T Consensus 50 ~~~vLL~GppGtGKTtlAr~ia~ 72 (447)
T 3pvs_A 50 LHSMILWGPPGTGKTTLAEVIAR 72 (447)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHH
T ss_pred CcEEEEECCCCCcHHHHHHHHHH
Confidence 36788999999999999999988
No 188
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=95.04 E-value=0.039 Score=41.51 Aligned_cols=25 Identities=20% Similarity=0.274 Sum_probs=22.1
Q ss_pred CcEEEEEEcCCCccHHHHHHHHhcc
Q 035574 14 QLSVVAILDSIGLDKTAFTAEAYNS 38 (156)
Q Consensus 14 ~~~vi~I~G~gGvGKTtLa~~vy~~ 38 (156)
....|.|.|..|+||||+++.+.+.
T Consensus 25 ~g~~i~i~G~~GsGKsT~~~~l~~~ 49 (229)
T 4eaq_A 25 MSAFITFEGPEGSGKTTVINEVYHR 49 (229)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHH
Confidence 4568999999999999999999883
No 189
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=95.04 E-value=0.013 Score=43.97 Aligned_cols=25 Identities=32% Similarity=0.256 Sum_probs=22.2
Q ss_pred CCcEEEEEEcCCCccHHHHHHHHhc
Q 035574 13 TQLSVVAILDSIGLDKTAFTAEAYN 37 (156)
Q Consensus 13 ~~~~vi~I~G~gGvGKTtLa~~vy~ 37 (156)
..-.+|+|.|..|.|||||++.+..
T Consensus 18 ~~g~~i~i~G~~GsGKSTl~~~L~~ 42 (230)
T 2vp4_A 18 TQPFTVLIEGNIGSGKTTYLNHFEK 42 (230)
T ss_dssp CCCEEEEEECSTTSCHHHHHHTTGG
T ss_pred CCceEEEEECCCCCCHHHHHHHHHh
Confidence 3457999999999999999999877
No 190
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=95.03 E-value=0.015 Score=44.85 Aligned_cols=23 Identities=17% Similarity=0.271 Sum_probs=20.9
Q ss_pred cEEEEEEcCCCccHHHHHHHHhc
Q 035574 15 LSVVAILDSIGLDKTAFTAEAYN 37 (156)
Q Consensus 15 ~~vi~I~G~gGvGKTtLa~~vy~ 37 (156)
...+-++|.+|+|||++|+.++.
T Consensus 47 ~~~~ll~G~~GtGKt~la~~la~ 69 (311)
T 4fcw_A 47 IGSFLFLGPTGVGKTELAKTLAA 69 (311)
T ss_dssp SEEEEEESCSSSSHHHHHHHHHH
T ss_pred ceEEEEECCCCcCHHHHHHHHHH
Confidence 45789999999999999999987
No 191
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=95.02 E-value=0.015 Score=47.73 Aligned_cols=24 Identities=25% Similarity=0.263 Sum_probs=21.8
Q ss_pred CcEEEEEEcCCCccHHHHHHHHhc
Q 035574 14 QLSVVAILDSIGLDKTAFTAEAYN 37 (156)
Q Consensus 14 ~~~vi~I~G~gGvGKTtLa~~vy~ 37 (156)
...+|-++|++|.||||+|+.+..
T Consensus 257 ~~~lIil~G~pGSGKSTla~~L~~ 280 (416)
T 3zvl_A 257 NPEVVVAVGFPGAGKSTFIQEHLV 280 (416)
T ss_dssp SCCEEEEESCTTSSHHHHHHHHTG
T ss_pred CCEEEEEECCCCCCHHHHHHHHHH
Confidence 467899999999999999999977
No 192
>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1
Probab=95.02 E-value=0.017 Score=43.44 Aligned_cols=23 Identities=17% Similarity=0.202 Sum_probs=20.8
Q ss_pred cEEEEEEcCCCccHHHHHHHHhc
Q 035574 15 LSVVAILDSIGLDKTAFTAEAYN 37 (156)
Q Consensus 15 ~~vi~I~G~gGvGKTtLa~~vy~ 37 (156)
...|.|.|..|+||||+++.+.+
T Consensus 2 ~~~i~~~G~~g~GKtt~~~~l~~ 24 (241)
T 2ocp_A 2 PRRLSIEGNIAVGKSTFVKLLTK 24 (241)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHH
T ss_pred CeEEEEEcCCCCCHHHHHHHHHH
Confidence 35789999999999999999987
No 193
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Probab=95.01 E-value=0.02 Score=39.70 Aligned_cols=23 Identities=17% Similarity=0.127 Sum_probs=20.0
Q ss_pred EEEEEEcCCCccHHHHHHHHhcc
Q 035574 16 SVVAILDSIGLDKTAFTAEAYNS 38 (156)
Q Consensus 16 ~vi~I~G~gGvGKTtLa~~vy~~ 38 (156)
--|.++|.+|+|||||...+..+
T Consensus 7 ~~i~v~G~~~~GKssli~~l~~~ 29 (170)
T 1z08_A 7 FKVVLLGEGCVGKTSLVLRYCEN 29 (170)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHC
T ss_pred eEEEEECcCCCCHHHHHHHHHcC
Confidence 45789999999999999998764
No 194
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=94.99 E-value=0.028 Score=44.81 Aligned_cols=26 Identities=12% Similarity=0.031 Sum_probs=22.3
Q ss_pred CCCcEEEEEEcCCCccHHHHHHHHhc
Q 035574 12 PTQLSVVAILDSIGLDKTAFTAEAYN 37 (156)
Q Consensus 12 ~~~~~vi~I~G~gGvGKTtLa~~vy~ 37 (156)
.....+++|+|.+|+|||||+..+..
T Consensus 53 ~~~~~~i~i~G~~g~GKSTl~~~l~~ 78 (341)
T 2p67_A 53 CGNTLRLGVTGTPGAGKSTFLEAFGM 78 (341)
T ss_dssp CSCSEEEEEEECTTSCHHHHHHHHHH
T ss_pred cCCCEEEEEEcCCCCCHHHHHHHHHH
Confidence 45578999999999999999998854
No 195
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=94.99 E-value=0.018 Score=46.73 Aligned_cols=24 Identities=21% Similarity=0.171 Sum_probs=21.5
Q ss_pred CcEEEEEEcCCCccHHHHHHHHhc
Q 035574 14 QLSVVAILDSIGLDKTAFTAEAYN 37 (156)
Q Consensus 14 ~~~vi~I~G~gGvGKTtLa~~vy~ 37 (156)
...++.++|..|+||||+++.+..
T Consensus 156 ~g~vi~lvG~nGsGKTTll~~Lag 179 (359)
T 2og2_A 156 KPAVIMIVGVNGGGKTTSLGKLAH 179 (359)
T ss_dssp SSEEEEEECCTTSCHHHHHHHHHH
T ss_pred CCeEEEEEcCCCChHHHHHHHHHh
Confidence 357999999999999999998876
No 196
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=94.98 E-value=0.015 Score=44.22 Aligned_cols=23 Identities=17% Similarity=0.348 Sum_probs=20.9
Q ss_pred cEEEEEEcCCCccHHHHHHHHhc
Q 035574 15 LSVVAILDSIGLDKTAFTAEAYN 37 (156)
Q Consensus 15 ~~vi~I~G~gGvGKTtLa~~vy~ 37 (156)
-.+++|+|..|.|||||.+.+..
T Consensus 31 Ge~~~i~G~nGsGKSTLl~~l~G 53 (237)
T 2cbz_A 31 GALVAVVGQVGCGKSSLLSALLA 53 (237)
T ss_dssp TCEEEEECSTTSSHHHHHHHHTT
T ss_pred CCEEEEECCCCCCHHHHHHHHhc
Confidence 35889999999999999999977
No 197
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=94.98 E-value=0.019 Score=39.48 Aligned_cols=24 Identities=25% Similarity=0.282 Sum_probs=20.3
Q ss_pred EEEEEEcCCCccHHHHHHHHhccc
Q 035574 16 SVVAILDSIGLDKTAFTAEAYNSS 39 (156)
Q Consensus 16 ~vi~I~G~gGvGKTtLa~~vy~~~ 39 (156)
.-|.++|.+|+|||||...+.+..
T Consensus 5 ~~i~v~G~~~~GKssl~~~l~~~~ 28 (168)
T 1u8z_A 5 HKVIMVGSGGVGKSALTLQFMYDE 28 (168)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEEECCCCCCHHHHHHHHHhCc
Confidence 457899999999999999987643
No 198
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=94.98 E-value=0.015 Score=41.34 Aligned_cols=24 Identities=17% Similarity=0.285 Sum_probs=20.2
Q ss_pred EEEEEEcCCCccHHHHHHHHhccc
Q 035574 16 SVVAILDSIGLDKTAFTAEAYNSS 39 (156)
Q Consensus 16 ~vi~I~G~gGvGKTtLa~~vy~~~ 39 (156)
--|.++|.+|+|||||+..+....
T Consensus 22 ~ki~vvG~~~~GKSsli~~l~~~~ 45 (190)
T 3con_A 22 YKLVVVGAGGVGKSALTIQLIQNH 45 (190)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSS
T ss_pred eEEEEECcCCCCHHHHHHHHHcCC
Confidence 357889999999999999987643
No 199
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=94.97 E-value=0.014 Score=44.96 Aligned_cols=23 Identities=26% Similarity=0.258 Sum_probs=20.6
Q ss_pred cEEEEEEcCCCccHHHHHHHHhc
Q 035574 15 LSVVAILDSIGLDKTAFTAEAYN 37 (156)
Q Consensus 15 ~~vi~I~G~gGvGKTtLa~~vy~ 37 (156)
-.+++|+|..|.|||||.+.+..
T Consensus 32 Ge~~~liG~nGsGKSTLlk~l~G 54 (262)
T 1b0u_A 32 GDVISIIGSSGSGKSTFLRCINF 54 (262)
T ss_dssp TCEEEEECCTTSSHHHHHHHHTT
T ss_pred CCEEEEECCCCCCHHHHHHHHhc
Confidence 46889999999999999999865
No 200
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=94.95 E-value=0.016 Score=44.04 Aligned_cols=23 Identities=17% Similarity=0.109 Sum_probs=20.7
Q ss_pred cEEEEEEcCCCccHHHHHHHHhc
Q 035574 15 LSVVAILDSIGLDKTAFTAEAYN 37 (156)
Q Consensus 15 ~~vi~I~G~gGvGKTtLa~~vy~ 37 (156)
-.+++|+|..|.|||||.+.+..
T Consensus 28 Ge~~~i~G~nGsGKSTLl~~l~G 50 (243)
T 1mv5_A 28 NSIIAFAGPSGGGKSTIFSLLER 50 (243)
T ss_dssp TEEEEEECCTTSSHHHHHHHHTT
T ss_pred CCEEEEECCCCCCHHHHHHHHhc
Confidence 46899999999999999999865
No 201
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*
Probab=94.95 E-value=0.019 Score=39.54 Aligned_cols=22 Identities=27% Similarity=0.376 Sum_probs=19.4
Q ss_pred EEEEEcCCCccHHHHHHHHhcc
Q 035574 17 VVAILDSIGLDKTAFTAEAYNS 38 (156)
Q Consensus 17 vi~I~G~gGvGKTtLa~~vy~~ 38 (156)
-|.++|..|+|||||...+.++
T Consensus 5 ki~v~G~~~~GKssli~~l~~~ 26 (167)
T 1c1y_A 5 KLVVLGSGGVGKSALTVQFVQG 26 (167)
T ss_dssp EEEEECSTTSSHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 4789999999999999998764
No 202
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=94.94 E-value=0.03 Score=44.68 Aligned_cols=26 Identities=15% Similarity=0.066 Sum_probs=22.4
Q ss_pred CCCcEEEEEEcCCCccHHHHHHHHhc
Q 035574 12 PTQLSVVAILDSIGLDKTAFTAEAYN 37 (156)
Q Consensus 12 ~~~~~vi~I~G~gGvGKTtLa~~vy~ 37 (156)
-....+++|+|..|+|||||.+.+..
T Consensus 52 ~~~g~~v~i~G~~GaGKSTLl~~l~g 77 (337)
T 2qm8_A 52 TGRAIRVGITGVPGVGKSTTIDALGS 77 (337)
T ss_dssp CCCSEEEEEECCTTSCHHHHHHHHHH
T ss_pred cCCCeEEEEECCCCCCHHHHHHHHHH
Confidence 34568999999999999999999864
No 203
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=94.94 E-value=0.015 Score=44.64 Aligned_cols=23 Identities=17% Similarity=0.141 Sum_probs=20.6
Q ss_pred cEEEEEEcCCCccHHHHHHHHhc
Q 035574 15 LSVVAILDSIGLDKTAFTAEAYN 37 (156)
Q Consensus 15 ~~vi~I~G~gGvGKTtLa~~vy~ 37 (156)
-.+++|+|..|.|||||.+.+..
T Consensus 33 Ge~~~liG~nGsGKSTLlk~l~G 55 (257)
T 1g6h_A 33 GDVTLIIGPNGSGKSTLINVITG 55 (257)
T ss_dssp TCEEEEECSTTSSHHHHHHHHTT
T ss_pred CCEEEEECCCCCCHHHHHHHHhC
Confidence 35889999999999999999876
No 204
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=94.93 E-value=0.015 Score=44.14 Aligned_cols=23 Identities=17% Similarity=0.200 Sum_probs=20.6
Q ss_pred cEEEEEEcCCCccHHHHHHHHhc
Q 035574 15 LSVVAILDSIGLDKTAFTAEAYN 37 (156)
Q Consensus 15 ~~vi~I~G~gGvGKTtLa~~vy~ 37 (156)
-.+++|+|..|.|||||.+.+..
T Consensus 32 Ge~~~l~G~nGsGKSTLl~~l~G 54 (240)
T 1ji0_A 32 GQIVTLIGANGAGKTTTLSAIAG 54 (240)
T ss_dssp TCEEEEECSTTSSHHHHHHHHTT
T ss_pred CCEEEEECCCCCCHHHHHHHHhC
Confidence 35789999999999999999876
No 205
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=94.92 E-value=0.024 Score=47.06 Aligned_cols=24 Identities=13% Similarity=0.097 Sum_probs=21.1
Q ss_pred CcEEEEEEcCCCccHHHHHHHHhc
Q 035574 14 QLSVVAILDSIGLDKTAFTAEAYN 37 (156)
Q Consensus 14 ~~~vi~I~G~gGvGKTtLa~~vy~ 37 (156)
..+++.++|.+|+||||++..+..
T Consensus 96 ~~~vI~lvG~~GsGKTTt~~kLA~ 119 (433)
T 3kl4_A 96 LPFIIMLVGVQGSGKTTTAGKLAY 119 (433)
T ss_dssp SSEEEEECCCTTSCHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 468999999999999999888764
No 206
>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}
Probab=94.92 E-value=0.081 Score=42.49 Aligned_cols=54 Identities=17% Similarity=-0.006 Sum_probs=37.7
Q ss_pred CCcEEEEEEcCCCccHHHHHHHHhccccccccCceEEEEEcCCCCCHHHHHHHHHHHh
Q 035574 13 TQLSVVAILDSIGLDKTAFTAEAYNSSYMKHYFDYLAWIPAPYHYDPDQILDIVAVIL 70 (156)
Q Consensus 13 ~~~~vi~I~G~gGvGKTtLa~~vy~~~~v~~~F~~~~wv~vs~~~~~~~l~~~il~~l 70 (156)
..-.++-|.|.+|+||||||..+..+... +=..++|++. +.+..++...++...
T Consensus 44 ~~G~LiiIaG~pG~GKTt~al~ia~~~a~--~g~~Vl~fSl--Ems~~ql~~Rlls~~ 97 (338)
T 4a1f_A 44 NKGSLVIIGARPSMGKTSLMMNMVLSALN--DDRGVAVFSL--EMSAEQLALRALSDL 97 (338)
T ss_dssp CTTCEEEEEECTTSCHHHHHHHHHHHHHH--TTCEEEEEES--SSCHHHHHHHHHHHH
T ss_pred CCCcEEEEEeCCCCCHHHHHHHHHHHHHH--cCCeEEEEeC--CCCHHHHHHHHHHHh
Confidence 44578899999999999999998774322 1124566654 566778877776653
No 207
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=94.91 E-value=0.017 Score=44.22 Aligned_cols=23 Identities=17% Similarity=0.125 Sum_probs=20.9
Q ss_pred cEEEEEEcCCCccHHHHHHHHhc
Q 035574 15 LSVVAILDSIGLDKTAFTAEAYN 37 (156)
Q Consensus 15 ~~vi~I~G~gGvGKTtLa~~vy~ 37 (156)
-.+++|+|..|.|||||.+.+..
T Consensus 29 Ge~~~l~G~nGsGKSTLlk~l~G 51 (250)
T 2d2e_A 29 GEVHALMGPNGAGKSTLGKILAG 51 (250)
T ss_dssp TCEEEEECSTTSSHHHHHHHHHT
T ss_pred CCEEEEECCCCCCHHHHHHHHhC
Confidence 35789999999999999999987
No 208
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=94.90 E-value=0.017 Score=46.61 Aligned_cols=22 Identities=18% Similarity=0.261 Sum_probs=20.2
Q ss_pred EEEEEEcCCCccHHHHHHHHhc
Q 035574 16 SVVAILDSIGLDKTAFTAEAYN 37 (156)
Q Consensus 16 ~vi~I~G~gGvGKTtLa~~vy~ 37 (156)
.+|.|.|..|+||||||..+..
T Consensus 8 ~lI~I~GptgSGKTtla~~La~ 29 (340)
T 3d3q_A 8 FLIVIVGPTASGKTELSIEVAK 29 (340)
T ss_dssp EEEEEECSTTSSHHHHHHHHHH
T ss_pred ceEEEECCCcCcHHHHHHHHHH
Confidence 5899999999999999998876
No 209
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A
Probab=94.90 E-value=0.026 Score=43.37 Aligned_cols=21 Identities=19% Similarity=0.056 Sum_probs=19.2
Q ss_pred EEEEEcCCCccHHHHHHHHhc
Q 035574 17 VVAILDSIGLDKTAFTAEAYN 37 (156)
Q Consensus 17 vi~I~G~gGvGKTtLa~~vy~ 37 (156)
.+-++|.+|+|||++|+.+.+
T Consensus 40 ~~ll~G~~G~GKt~la~~l~~ 60 (319)
T 2chq_A 40 HLLFSGPPGTGKTATAIALAR 60 (319)
T ss_dssp CEEEESSSSSSHHHHHHHHHH
T ss_pred eEEEECcCCcCHHHHHHHHHH
Confidence 378999999999999999887
No 210
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Probab=94.90 E-value=0.023 Score=39.21 Aligned_cols=22 Identities=18% Similarity=0.288 Sum_probs=19.4
Q ss_pred EEEEEcCCCccHHHHHHHHhcc
Q 035574 17 VVAILDSIGLDKTAFTAEAYNS 38 (156)
Q Consensus 17 vi~I~G~gGvGKTtLa~~vy~~ 38 (156)
-|.++|.+|+|||||...+.+.
T Consensus 5 ~i~v~G~~~~GKssli~~l~~~ 26 (172)
T 2erx_A 5 RVAVFGAGGVGKSSLVLRFVKG 26 (172)
T ss_dssp EEEEECCTTSSHHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 4789999999999999998764
No 211
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=94.88 E-value=0.013 Score=46.99 Aligned_cols=23 Identities=13% Similarity=0.052 Sum_probs=20.8
Q ss_pred cEEEEEEcCCCccHHHHHHHHhc
Q 035574 15 LSVVAILDSIGLDKTAFTAEAYN 37 (156)
Q Consensus 15 ~~vi~I~G~gGvGKTtLa~~vy~ 37 (156)
.+-+-++|.+|+|||+||+.+++
T Consensus 117 ~~~vLl~GppGtGKT~la~aia~ 139 (357)
T 3d8b_A 117 PKGILLFGPPGTGKTLIGKCIAS 139 (357)
T ss_dssp CSEEEEESSTTSSHHHHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHHHHH
Confidence 45688999999999999999987
No 212
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=94.87 E-value=0.022 Score=39.22 Aligned_cols=24 Identities=4% Similarity=0.090 Sum_probs=20.3
Q ss_pred cEEEEEEcCCCccHHHHHHHHhcc
Q 035574 15 LSVVAILDSIGLDKTAFTAEAYNS 38 (156)
Q Consensus 15 ~~vi~I~G~gGvGKTtLa~~vy~~ 38 (156)
.--|.++|.+|+|||||...+.++
T Consensus 5 ~~~i~v~G~~~~GKssl~~~l~~~ 28 (168)
T 1z2a_A 5 AIKMVVVGNGAVGKSSMIQRYCKG 28 (168)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHC
T ss_pred eEEEEEECcCCCCHHHHHHHHHcC
Confidence 345789999999999999998764
No 213
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=94.87 E-value=0.027 Score=45.89 Aligned_cols=26 Identities=15% Similarity=0.058 Sum_probs=22.5
Q ss_pred CCCcEEEEEEcCCCccHHHHHHHHhc
Q 035574 12 PTQLSVVAILDSIGLDKTAFTAEAYN 37 (156)
Q Consensus 12 ~~~~~vi~I~G~gGvGKTtLa~~vy~ 37 (156)
-...+.+.|+|..|.|||||++.+..
T Consensus 166 i~~~~~i~l~G~~GsGKSTl~~~l~~ 191 (377)
T 1svm_A 166 IPKKRYWLFKGPIDSGKTTLAAALLE 191 (377)
T ss_dssp CTTCCEEEEECSTTSSHHHHHHHHHH
T ss_pred cCCCCEEEEECCCCCCHHHHHHHHHh
Confidence 34457899999999999999999876
No 214
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=94.87 E-value=0.016 Score=43.80 Aligned_cols=23 Identities=22% Similarity=0.221 Sum_probs=20.8
Q ss_pred cEEEEEEcCCCccHHHHHHHHhc
Q 035574 15 LSVVAILDSIGLDKTAFTAEAYN 37 (156)
Q Consensus 15 ~~vi~I~G~gGvGKTtLa~~vy~ 37 (156)
-.+++|+|..|.|||||.+.+..
T Consensus 34 Ge~~~i~G~nGsGKSTLl~~l~G 56 (229)
T 2pze_A 34 GQLLAVAGSTGAGKTSLLMMIMG 56 (229)
T ss_dssp TCEEEEECCTTSSHHHHHHHHTT
T ss_pred CCEEEEECCCCCCHHHHHHHHhC
Confidence 35789999999999999999977
No 215
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=94.86 E-value=0.026 Score=41.85 Aligned_cols=49 Identities=16% Similarity=0.133 Sum_probs=31.1
Q ss_pred CcEEEEEEcCCCccHHHHHHHHhccccccccCceEEEEEcCCCCCHHHHHHHH
Q 035574 14 QLSVVAILDSIGLDKTAFTAEAYNSSYMKHYFDYLAWIPAPYHYDPDQILDIV 66 (156)
Q Consensus 14 ~~~vi~I~G~gGvGKTtLa~~vy~~~~v~~~F~~~~wv~vs~~~~~~~l~~~i 66 (156)
.-.++.|.|.+|+|||||+.++.... ...=...+|++... ...++.+.+
T Consensus 22 ~G~~~~i~G~~GsGKTtl~~~~~~~~--~~~~~~v~~~~~e~--~~~~~~~~~ 70 (247)
T 2dr3_A 22 ERNVVLLSGGPGTGKTIFSQQFLWNG--LKMGEPGIYVALEE--HPVQVRQNM 70 (247)
T ss_dssp TTCEEEEEECTTSSHHHHHHHHHHHH--HHTTCCEEEEESSS--CHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHH--HhcCCeEEEEEccC--CHHHHHHHH
Confidence 34688999999999999988876522 11112466766443 345554443
No 216
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=94.86 E-value=0.046 Score=44.23 Aligned_cols=45 Identities=22% Similarity=0.234 Sum_probs=31.3
Q ss_pred CCcEEEEEEcCCCccHHHHHHHHhccccccccCceEEEEEcCCCCCH
Q 035574 13 TQLSVVAILDSIGLDKTAFTAEAYNSSYMKHYFDYLAWIPAPYHYDP 59 (156)
Q Consensus 13 ~~~~vi~I~G~gGvGKTtLa~~vy~~~~v~~~F~~~~wv~vs~~~~~ 59 (156)
..-+++.|.|.+|+|||||+.++.... ...=...+|+.....++.
T Consensus 59 ~~G~i~~I~GppGsGKSTLal~la~~~--~~~gg~VlyId~E~s~~~ 103 (356)
T 3hr8_A 59 PRGRIVEIFGQESSGKTTLALHAIAEA--QKMGGVAAFIDAEHALDP 103 (356)
T ss_dssp ETTEEEEEEESTTSSHHHHHHHHHHHH--HHTTCCEEEEESSCCCCH
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHHHH--HhcCCeEEEEecccccch
Confidence 345799999999999999999987632 211123567776655554
No 217
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=94.83 E-value=0.03 Score=45.21 Aligned_cols=44 Identities=23% Similarity=0.195 Sum_probs=31.6
Q ss_pred CcEEEEEEcCCCccHHHHHHHHhccccccccCceEEEEEcCCCCCH
Q 035574 14 QLSVVAILDSIGLDKTAFTAEAYNSSYMKHYFDYLAWIPAPYHYDP 59 (156)
Q Consensus 14 ~~~vi~I~G~gGvGKTtLa~~vy~~~~v~~~F~~~~wv~vs~~~~~ 59 (156)
.-+++-|.|.+|+||||||.++.... ...=...+|++....++.
T Consensus 62 ~G~ii~I~G~pGsGKTtLal~la~~~--~~~g~~vlyid~E~s~~~ 105 (356)
T 1u94_A 62 MGRIVEIYGPESSGKTTLTLQVIAAA--QREGKTCAFIDAEHALDP 105 (356)
T ss_dssp TTSEEEEECSTTSSHHHHHHHHHHHH--HHTTCCEEEEESSCCCCH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH--HHCCCeEEEEeCCCCccH
Confidence 45688999999999999999887632 211124778887666654
No 218
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=94.83 E-value=0.016 Score=45.11 Aligned_cols=23 Identities=26% Similarity=0.267 Sum_probs=20.5
Q ss_pred cEEEEEEcCCCccHHHHHHHHhc
Q 035574 15 LSVVAILDSIGLDKTAFTAEAYN 37 (156)
Q Consensus 15 ~~vi~I~G~gGvGKTtLa~~vy~ 37 (156)
-.+++|+|..|.|||||.+.+..
T Consensus 34 Ge~~~iiGpnGsGKSTLl~~l~G 56 (275)
T 3gfo_A 34 GEVTAILGGNGVGKSTLFQNFNG 56 (275)
T ss_dssp TSEEEEECCTTSSHHHHHHHHTT
T ss_pred CCEEEEECCCCCCHHHHHHHHHc
Confidence 35789999999999999999865
No 219
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=94.83 E-value=0.031 Score=46.28 Aligned_cols=34 Identities=18% Similarity=0.168 Sum_probs=24.9
Q ss_pred HHHHhcCCCCcEEEEEEcCCCccHHHHHHHHhcc
Q 035574 5 LDLLIEGPTQLSVVAILDSIGLDKTAFTAEAYNS 38 (156)
Q Consensus 5 ~~~L~~~~~~~~vi~I~G~gGvGKTtLa~~vy~~ 38 (156)
++++..+....+-+-++|.+|+|||+||+.+.+.
T Consensus 53 ~~~~~~~~~~~~~iLl~GppGtGKT~la~ala~~ 86 (456)
T 2c9o_A 53 VELIKSKKMAGRAVLLAGPPGTGKTALALAIAQE 86 (456)
T ss_dssp HHHHHTTCCTTCEEEEECCTTSSHHHHHHHHHHH
T ss_pred HHHHHhCCCCCCeEEEECCCcCCHHHHHHHHHHH
Confidence 3444444333455778999999999999999883
No 220
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=94.82 E-value=0.022 Score=44.96 Aligned_cols=23 Identities=13% Similarity=0.104 Sum_probs=20.0
Q ss_pred EEEEEEcCCCccHHHHHHHHhcc
Q 035574 16 SVVAILDSIGLDKTAFTAEAYNS 38 (156)
Q Consensus 16 ~vi~I~G~gGvGKTtLa~~vy~~ 38 (156)
..+-++|..|+||||+|+.+.+.
T Consensus 39 ~~~ll~G~~G~GKT~la~~la~~ 61 (373)
T 1jr3_A 39 HAYLFSGTRGVGKTSIARLLAKG 61 (373)
T ss_dssp SEEEEESCTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 46789999999999999998763
No 221
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=94.81 E-value=0.016 Score=44.53 Aligned_cols=23 Identities=17% Similarity=0.140 Sum_probs=20.6
Q ss_pred cEEEEEEcCCCccHHHHHHHHhc
Q 035574 15 LSVVAILDSIGLDKTAFTAEAYN 37 (156)
Q Consensus 15 ~~vi~I~G~gGvGKTtLa~~vy~ 37 (156)
-.++.|+|.+|.|||||+.++..
T Consensus 30 G~i~~i~G~~GsGKTtl~~~l~~ 52 (279)
T 1nlf_A 30 GTVGALVSPGGAGKSMLALQLAA 52 (279)
T ss_dssp TSEEEEEESTTSSHHHHHHHHHH
T ss_pred CCEEEEEcCCCCCHHHHHHHHHH
Confidence 46889999999999999998875
No 222
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=94.81 E-value=0.018 Score=39.76 Aligned_cols=24 Identities=21% Similarity=0.260 Sum_probs=20.2
Q ss_pred EEEEEEcCCCccHHHHHHHHhccc
Q 035574 16 SVVAILDSIGLDKTAFTAEAYNSS 39 (156)
Q Consensus 16 ~vi~I~G~gGvGKTtLa~~vy~~~ 39 (156)
--|.++|..|+|||||...+.++.
T Consensus 7 ~~i~v~G~~~~GKSsli~~l~~~~ 30 (170)
T 1z0j_A 7 LKVCLLGDTGVGKSSIMWRFVEDS 30 (170)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHSC
T ss_pred eEEEEECcCCCCHHHHHHHHHcCC
Confidence 357889999999999999987643
No 223
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*
Probab=94.80 E-value=0.017 Score=39.97 Aligned_cols=21 Identities=24% Similarity=0.238 Sum_probs=18.7
Q ss_pred EEEEEcCCCccHHHHHHHHhc
Q 035574 17 VVAILDSIGLDKTAFTAEAYN 37 (156)
Q Consensus 17 vi~I~G~gGvGKTtLa~~vy~ 37 (156)
-|.++|.+|+|||||...+.+
T Consensus 4 ki~~vG~~~~GKSsli~~l~~ 24 (166)
T 3q72_A 4 KVLLLGAPGVGKSALARIFGG 24 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHcC
Confidence 478999999999999999865
No 224
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=94.80 E-value=0.019 Score=39.64 Aligned_cols=23 Identities=9% Similarity=0.202 Sum_probs=19.5
Q ss_pred EEEEEcCCCccHHHHHHHHhccc
Q 035574 17 VVAILDSIGLDKTAFTAEAYNSS 39 (156)
Q Consensus 17 vi~I~G~gGvGKTtLa~~vy~~~ 39 (156)
-|.++|..|+|||||...+.++.
T Consensus 5 ~i~v~G~~~~GKssli~~l~~~~ 27 (170)
T 1ek0_A 5 KLVLLGEAAVGKSSIVLRFVSND 27 (170)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 47889999999999999887643
No 225
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=94.80 E-value=0.021 Score=44.77 Aligned_cols=24 Identities=17% Similarity=0.054 Sum_probs=21.1
Q ss_pred CcEEEEEEcCCCccHHHHHHHHhc
Q 035574 14 QLSVVAILDSIGLDKTAFTAEAYN 37 (156)
Q Consensus 14 ~~~vi~I~G~gGvGKTtLa~~vy~ 37 (156)
...++.++|.+|+||||++..+..
T Consensus 97 ~~~~i~i~g~~G~GKTT~~~~la~ 120 (295)
T 1ls1_A 97 DRNLWFLVGLQGSGKTTTAAKLAL 120 (295)
T ss_dssp SSEEEEEECCTTTTHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 457999999999999999998765
No 226
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=94.80 E-value=0.018 Score=44.51 Aligned_cols=24 Identities=25% Similarity=0.232 Sum_probs=21.3
Q ss_pred cEEEEEEcCCCccHHHHHHHHhcc
Q 035574 15 LSVVAILDSIGLDKTAFTAEAYNS 38 (156)
Q Consensus 15 ~~vi~I~G~gGvGKTtLa~~vy~~ 38 (156)
-.+++|+|..|.|||||.+.++.-
T Consensus 46 Ge~~~l~G~NGsGKSTLlk~l~Gl 69 (267)
T 2zu0_C 46 GEVHAIMGPNGSGKSTLSATLAGR 69 (267)
T ss_dssp TCEEEEECCTTSSHHHHHHHHHTC
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 358899999999999999999873
No 227
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=94.80 E-value=0.018 Score=43.96 Aligned_cols=23 Identities=22% Similarity=0.177 Sum_probs=20.2
Q ss_pred cEEEEEEcCCCccHHHHHHHHhc
Q 035574 15 LSVVAILDSIGLDKTAFTAEAYN 37 (156)
Q Consensus 15 ~~vi~I~G~gGvGKTtLa~~vy~ 37 (156)
..+|.|.|..|.||||+++.+..
T Consensus 9 ~~~i~i~G~~GsGKsTla~~la~ 31 (233)
T 3r20_A 9 SLVVAVDGPAGTGKSSVSRGLAR 31 (233)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 35799999999999999998864
No 228
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=94.79 E-value=0.017 Score=44.69 Aligned_cols=23 Identities=22% Similarity=0.192 Sum_probs=20.7
Q ss_pred cEEEEEEcCCCccHHHHHHHHhc
Q 035574 15 LSVVAILDSIGLDKTAFTAEAYN 37 (156)
Q Consensus 15 ~~vi~I~G~gGvGKTtLa~~vy~ 37 (156)
-.+++|+|..|.|||||.+.+..
T Consensus 37 Ge~~~liG~nGsGKSTLl~~l~G 59 (266)
T 4g1u_C 37 GEMVAIIGPNGAGKSTLLRLLTG 59 (266)
T ss_dssp TCEEEEECCTTSCHHHHHHHHTS
T ss_pred CCEEEEECCCCCcHHHHHHHHhc
Confidence 36789999999999999999876
No 229
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=94.79 E-value=0.019 Score=45.84 Aligned_cols=23 Identities=17% Similarity=0.202 Sum_probs=20.6
Q ss_pred cEEEEEEcCCCccHHHHHHHHhc
Q 035574 15 LSVVAILDSIGLDKTAFTAEAYN 37 (156)
Q Consensus 15 ~~vi~I~G~gGvGKTtLa~~vy~ 37 (156)
...+-++|.+|+|||++|+.+++
T Consensus 51 ~~~vll~GppGtGKT~la~~ia~ 73 (363)
T 3hws_A 51 KSNILLIGPTGSGKTLLAETLAR 73 (363)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHHH
Confidence 45688999999999999999987
No 230
>1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET: GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A*
Probab=94.79 E-value=0.039 Score=42.17 Aligned_cols=32 Identities=9% Similarity=0.138 Sum_probs=24.4
Q ss_pred HhcCCCCcEEEEEEcCCCccHHHHHHHHhccc
Q 035574 8 LIEGPTQLSVVAILDSIGLDKTAFTAEAYNSS 39 (156)
Q Consensus 8 L~~~~~~~~vi~I~G~gGvGKTtLa~~vy~~~ 39 (156)
+.......-.|.++|..|+|||||...+.+..
T Consensus 32 ~~~~~~~~~~I~vvG~~g~GKSSLin~l~~~~ 63 (270)
T 1h65_A 32 LKQEDVNSLTILVMGKGGVGKSSTVNSIIGER 63 (270)
T ss_dssp HHHTTCCEEEEEEEESTTSSHHHHHHHHHTSC
T ss_pred HhhcCCCCeEEEEECCCCCCHHHHHHHHhCCC
Confidence 33334445678899999999999999988754
No 231
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=94.77 E-value=0.018 Score=44.05 Aligned_cols=22 Identities=23% Similarity=0.306 Sum_probs=20.1
Q ss_pred EEEEEEcCCCccHHHHHHHHhc
Q 035574 16 SVVAILDSIGLDKTAFTAEAYN 37 (156)
Q Consensus 16 ~vi~I~G~gGvGKTtLa~~vy~ 37 (156)
.+++|+|..|.|||||.+.+..
T Consensus 36 e~~~i~G~nGsGKSTLl~~l~G 57 (247)
T 2ff7_A 36 EVIGIVGRSGSGKSTLTKLIQR 57 (247)
T ss_dssp CEEEEECSTTSSHHHHHHHHTT
T ss_pred CEEEEECCCCCCHHHHHHHHhc
Confidence 5789999999999999999866
No 232
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=94.77 E-value=0.023 Score=39.00 Aligned_cols=22 Identities=32% Similarity=0.397 Sum_probs=19.2
Q ss_pred EEEEEcCCCccHHHHHHHHhcc
Q 035574 17 VVAILDSIGLDKTAFTAEAYNS 38 (156)
Q Consensus 17 vi~I~G~gGvGKTtLa~~vy~~ 38 (156)
-|.++|..|+|||||...+.++
T Consensus 5 ~i~v~G~~~~GKSsli~~l~~~ 26 (167)
T 1kao_A 5 KVVVLGSGGVGKSALTVQFVTG 26 (167)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 4789999999999999888754
No 233
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=94.77 E-value=0.018 Score=44.63 Aligned_cols=23 Identities=22% Similarity=0.200 Sum_probs=20.6
Q ss_pred cEEEEEEcCCCccHHHHHHHHhc
Q 035574 15 LSVVAILDSIGLDKTAFTAEAYN 37 (156)
Q Consensus 15 ~~vi~I~G~gGvGKTtLa~~vy~ 37 (156)
-.+++|+|..|.|||||.+.+..
T Consensus 50 Gei~~liG~NGsGKSTLlk~l~G 72 (263)
T 2olj_A 50 GEVVVVIGPSGSGKSTFLRCLNL 72 (263)
T ss_dssp TCEEEEECCTTSSHHHHHHHHTT
T ss_pred CCEEEEEcCCCCcHHHHHHHHHc
Confidence 46889999999999999999876
No 234
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*
Probab=94.76 E-value=0.019 Score=39.74 Aligned_cols=21 Identities=14% Similarity=0.240 Sum_probs=18.5
Q ss_pred EEEEEcCCCccHHHHHHHHhc
Q 035574 17 VVAILDSIGLDKTAFTAEAYN 37 (156)
Q Consensus 17 vi~I~G~gGvGKTtLa~~vy~ 37 (156)
-|.++|.+|+|||||...+..
T Consensus 4 ki~ivG~~~~GKSsli~~l~~ 24 (169)
T 3q85_A 4 KVMLVGESGVGKSTLAGTFGG 24 (169)
T ss_dssp EEEEECSTTSSHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHh
Confidence 478999999999999998854
No 235
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=94.76 E-value=0.093 Score=43.01 Aligned_cols=50 Identities=8% Similarity=0.059 Sum_probs=33.3
Q ss_pred CCcEEEEEEcCCCccHHHHHHHHhccccccc----cCceEEEEEcCCCCCHHHH
Q 035574 13 TQLSVVAILDSIGLDKTAFTAEAYNSSYMKH----YFDYLAWIPAPYHYDPDQI 62 (156)
Q Consensus 13 ~~~~vi~I~G~gGvGKTtLa~~vy~~~~v~~----~F~~~~wv~vs~~~~~~~l 62 (156)
..-.++.|+|.+|+|||||+..+.-.-.... .-...+|+.....++...+
T Consensus 176 ~~Gei~~I~G~sGsGKTTLl~~la~~~~~p~~~Gg~~~~viyid~E~~~~~~rl 229 (400)
T 3lda_A 176 ETGSITELFGEFRTGKSQLCHTLAVTCQIPLDIGGGEGKCLYIDTEGTFRPVRL 229 (400)
T ss_dssp ETTSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSSCCCHHHH
T ss_pred CCCcEEEEEcCCCCChHHHHHHHHHHhccCcccCCCCCcEEEEeCCCccCHHHH
Confidence 3457899999999999999997653111111 1234788877666665544
No 236
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*
Probab=94.75 E-value=0.018 Score=40.86 Aligned_cols=23 Identities=13% Similarity=-0.146 Sum_probs=19.3
Q ss_pred cEEEEEEcCCCccHHHHHHHHhc
Q 035574 15 LSVVAILDSIGLDKTAFTAEAYN 37 (156)
Q Consensus 15 ~~vi~I~G~gGvGKTtLa~~vy~ 37 (156)
.--|.++|.+|+|||||.+.+.+
T Consensus 14 ~~ki~vvG~~~~GKssL~~~l~~ 36 (198)
T 3t1o_A 14 NFKIVYYGPGLSGKTTNLKWIYS 36 (198)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHH
T ss_pred ccEEEEECCCCCCHHHHHHHHHh
Confidence 34578999999999999987765
No 237
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=94.75 E-value=0.013 Score=43.75 Aligned_cols=22 Identities=23% Similarity=0.155 Sum_probs=19.9
Q ss_pred EEEEEEcCCCccHHHHHHHHhc
Q 035574 16 SVVAILDSIGLDKTAFTAEAYN 37 (156)
Q Consensus 16 ~vi~I~G~gGvGKTtLa~~vy~ 37 (156)
.+++|+|..|.|||||.+.+..
T Consensus 23 e~~~liG~nGsGKSTLl~~l~G 44 (208)
T 3b85_A 23 TIVFGLGPAGSGKTYLAMAKAV 44 (208)
T ss_dssp SEEEEECCTTSSTTHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHhc
Confidence 5789999999999999998875
No 238
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=94.73 E-value=0.025 Score=44.53 Aligned_cols=20 Identities=10% Similarity=0.097 Sum_probs=18.3
Q ss_pred EEEEcCCCccHHHHHHHHhc
Q 035574 18 VAILDSIGLDKTAFTAEAYN 37 (156)
Q Consensus 18 i~I~G~gGvGKTtLa~~vy~ 37 (156)
+-++|..|+||||+++.+..
T Consensus 39 ~ll~Gp~G~GKTtl~~~la~ 58 (354)
T 1sxj_E 39 LLLYGPNGTGKKTRCMALLE 58 (354)
T ss_dssp EEEECSTTSSHHHHHHTHHH
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 88999999999999998766
No 239
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=94.73 E-value=0.019 Score=40.93 Aligned_cols=25 Identities=12% Similarity=0.021 Sum_probs=21.4
Q ss_pred CcEEEEEEcCCCccHHHHHHHHhcc
Q 035574 14 QLSVVAILDSIGLDKTAFTAEAYNS 38 (156)
Q Consensus 14 ~~~vi~I~G~gGvGKTtLa~~vy~~ 38 (156)
....|.++|.+|+|||||...+...
T Consensus 47 ~~~~i~vvG~~g~GKSsll~~l~~~ 71 (193)
T 2ged_A 47 YQPSIIIAGPQNSGKTSLLTLLTTD 71 (193)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcC
Confidence 3457899999999999999998774
No 240
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=94.73 E-value=0.031 Score=47.03 Aligned_cols=24 Identities=13% Similarity=0.159 Sum_probs=21.6
Q ss_pred cEEEEEEcCCCccHHHHHHHHhcc
Q 035574 15 LSVVAILDSIGLDKTAFTAEAYNS 38 (156)
Q Consensus 15 ~~vi~I~G~gGvGKTtLa~~vy~~ 38 (156)
.+.+-++|.+|+||||||+.+++.
T Consensus 77 ~~~lLL~GppGtGKTtla~~la~~ 100 (516)
T 1sxj_A 77 FRAAMLYGPPGIGKTTAAHLVAQE 100 (516)
T ss_dssp CSEEEEECSTTSSHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHH
Confidence 468899999999999999999883
No 241
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=94.72 E-value=0.019 Score=44.59 Aligned_cols=23 Identities=26% Similarity=0.218 Sum_probs=20.6
Q ss_pred cEEEEEEcCCCccHHHHHHHHhc
Q 035574 15 LSVVAILDSIGLDKTAFTAEAYN 37 (156)
Q Consensus 15 ~~vi~I~G~gGvGKTtLa~~vy~ 37 (156)
-.+++|+|..|.|||||.+.+..
T Consensus 45 Ge~~~i~G~nGsGKSTLlk~l~G 67 (271)
T 2ixe_A 45 GKVTALVGPNGSGKSTVAALLQN 67 (271)
T ss_dssp TCEEEEECSTTSSHHHHHHHHTT
T ss_pred CCEEEEECCCCCCHHHHHHHHhc
Confidence 35789999999999999999876
No 242
>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*
Probab=94.72 E-value=0.023 Score=40.37 Aligned_cols=24 Identities=13% Similarity=0.054 Sum_probs=20.4
Q ss_pred cEEEEEEcCCCccHHHHHHHHhcc
Q 035574 15 LSVVAILDSIGLDKTAFTAEAYNS 38 (156)
Q Consensus 15 ~~vi~I~G~gGvGKTtLa~~vy~~ 38 (156)
.--|.++|.+|+|||||...+.++
T Consensus 7 ~~ki~v~G~~~vGKSsli~~l~~~ 30 (184)
T 1m7b_A 7 KCKIVVVGDSQCGKTALLHVFAKD 30 (184)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEEEECCCCCCHHHHHHHHhcC
Confidence 345789999999999999998764
No 243
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=94.71 E-value=0.019 Score=44.28 Aligned_cols=23 Identities=13% Similarity=0.083 Sum_probs=20.8
Q ss_pred cEEEEEEcCCCccHHHHHHHHhc
Q 035574 15 LSVVAILDSIGLDKTAFTAEAYN 37 (156)
Q Consensus 15 ~~vi~I~G~gGvGKTtLa~~vy~ 37 (156)
-.+++|+|..|.|||||.+.+..
T Consensus 41 Gei~~l~G~NGsGKSTLlk~l~G 63 (256)
T 1vpl_A 41 GEIFGLIGPNGAGKTTTLRIIST 63 (256)
T ss_dssp TCEEEEECCTTSSHHHHHHHHTT
T ss_pred CcEEEEECCCCCCHHHHHHHHhc
Confidence 35889999999999999999876
No 244
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=94.71 E-value=0.019 Score=44.26 Aligned_cols=23 Identities=17% Similarity=0.271 Sum_probs=20.6
Q ss_pred cEEEEEEcCCCccHHHHHHHHhc
Q 035574 15 LSVVAILDSIGLDKTAFTAEAYN 37 (156)
Q Consensus 15 ~~vi~I~G~gGvGKTtLa~~vy~ 37 (156)
-.+++|+|..|.|||||.+.+..
T Consensus 46 Ge~~~i~G~nGsGKSTLl~~l~G 68 (260)
T 2ghi_A 46 GTTCALVGHTGSGKSTIAKLLYR 68 (260)
T ss_dssp TCEEEEECSTTSSHHHHHHHHTT
T ss_pred CCEEEEECCCCCCHHHHHHHHhc
Confidence 35889999999999999999866
No 245
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*
Probab=94.71 E-value=0.026 Score=40.19 Aligned_cols=26 Identities=19% Similarity=0.280 Sum_probs=22.1
Q ss_pred CCcEEEEEEcCCCccHHHHHHHHhcc
Q 035574 13 TQLSVVAILDSIGLDKTAFTAEAYNS 38 (156)
Q Consensus 13 ~~~~vi~I~G~gGvGKTtLa~~vy~~ 38 (156)
.....|.++|..|+|||||...+.+.
T Consensus 21 ~~~~~i~v~G~~~~GKSsli~~l~~~ 46 (195)
T 1svi_A 21 GGLPEIALAGRSNVGKSSFINSLINR 46 (195)
T ss_dssp SCCCEEEEEEBTTSSHHHHHHHHHTC
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 34567899999999999999998764
No 246
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=94.70 E-value=0.02 Score=40.57 Aligned_cols=23 Identities=13% Similarity=0.043 Sum_probs=20.3
Q ss_pred EEEEEEcCCCccHHHHHHHHhcc
Q 035574 16 SVVAILDSIGLDKTAFTAEAYNS 38 (156)
Q Consensus 16 ~vi~I~G~gGvGKTtLa~~vy~~ 38 (156)
..|.|+|.+|+|||||...+...
T Consensus 5 ~ki~ivG~~g~GKStLl~~l~~~ 27 (172)
T 2gj8_A 5 MKVVIAGRPNAGKSSLLNALAGR 27 (172)
T ss_dssp EEEEEEESTTSSHHHHHHHHHTS
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 45789999999999999999764
No 247
>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*
Probab=94.69 E-value=0.023 Score=39.92 Aligned_cols=24 Identities=21% Similarity=0.234 Sum_probs=20.5
Q ss_pred cEEEEEEcCCCccHHHHHHHHhcc
Q 035574 15 LSVVAILDSIGLDKTAFTAEAYNS 38 (156)
Q Consensus 15 ~~vi~I~G~gGvGKTtLa~~vy~~ 38 (156)
..-|.++|..|+|||||...+.++
T Consensus 6 ~~ki~~~G~~~~GKSsli~~l~~~ 29 (181)
T 3t5g_A 6 SRKIAILGYRSVGKSSLTIQFVEG 29 (181)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHS
T ss_pred eEEEEEECcCCCCHHHHHHHHHcC
Confidence 456789999999999999998754
No 248
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Probab=94.69 E-value=0.02 Score=40.00 Aligned_cols=25 Identities=28% Similarity=0.353 Sum_probs=21.0
Q ss_pred CcEEEEEEcCCCccHHHHHHHHhcc
Q 035574 14 QLSVVAILDSIGLDKTAFTAEAYNS 38 (156)
Q Consensus 14 ~~~vi~I~G~gGvGKTtLa~~vy~~ 38 (156)
...-|.++|..|+|||||...+..+
T Consensus 7 ~~~~i~v~G~~~~GKSsli~~l~~~ 31 (182)
T 1ky3_A 7 NILKVIILGDSGVGKTSLMHRYVND 31 (182)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHHS
T ss_pred ceEEEEEECCCCCCHHHHHHHHHhC
Confidence 3456889999999999999988764
No 249
>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A
Probab=94.68 E-value=0.028 Score=39.80 Aligned_cols=26 Identities=15% Similarity=0.227 Sum_probs=22.0
Q ss_pred CcEEEEEEcCCCccHHHHHHHHhccc
Q 035574 14 QLSVVAILDSIGLDKTAFTAEAYNSS 39 (156)
Q Consensus 14 ~~~vi~I~G~gGvGKTtLa~~vy~~~ 39 (156)
....|.++|..|+|||||...+....
T Consensus 22 ~~~~i~v~G~~~~GKSsli~~l~~~~ 47 (195)
T 3pqc_A 22 LKGEVAFVGRSNVGKSSLLNALFNRK 47 (195)
T ss_dssp TTCEEEEEEBTTSSHHHHHHHHHTSC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHcCc
Confidence 34578899999999999999987753
No 250
>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*
Probab=94.68 E-value=0.024 Score=39.95 Aligned_cols=24 Identities=17% Similarity=0.315 Sum_probs=20.7
Q ss_pred cEEEEEEcCCCccHHHHHHHHhcc
Q 035574 15 LSVVAILDSIGLDKTAFTAEAYNS 38 (156)
Q Consensus 15 ~~vi~I~G~gGvGKTtLa~~vy~~ 38 (156)
.--|.++|..|+|||||...+.+.
T Consensus 18 ~~ki~v~G~~~~GKSsl~~~l~~~ 41 (183)
T 3kkq_A 18 TYKLVVVGDGGVGKSALTIQFFQK 41 (183)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHS
T ss_pred ceEEEEECCCCCCHHHHHHHHHhC
Confidence 456789999999999999998864
No 251
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=94.68 E-value=0.019 Score=44.31 Aligned_cols=23 Identities=9% Similarity=0.070 Sum_probs=20.6
Q ss_pred cEEEEEEcCCCccHHHHHHHHhc
Q 035574 15 LSVVAILDSIGLDKTAFTAEAYN 37 (156)
Q Consensus 15 ~~vi~I~G~gGvGKTtLa~~vy~ 37 (156)
-.+++|+|..|.|||||.+.++.
T Consensus 33 Ge~~~liG~nGsGKSTLl~~i~G 55 (266)
T 2yz2_A 33 GECLLVAGNTGSGKSTLLQIVAG 55 (266)
T ss_dssp TCEEEEECSTTSSHHHHHHHHTT
T ss_pred CCEEEEECCCCCcHHHHHHHHhC
Confidence 45889999999999999999866
No 252
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=94.67 E-value=0.01 Score=45.05 Aligned_cols=21 Identities=19% Similarity=0.245 Sum_probs=18.9
Q ss_pred EEEEcCCCccHHHHHHHHhcc
Q 035574 18 VAILDSIGLDKTAFTAEAYNS 38 (156)
Q Consensus 18 i~I~G~gGvGKTtLa~~vy~~ 38 (156)
+-++|.+|+|||+||+.+++.
T Consensus 47 vll~G~~GtGKT~la~~la~~ 67 (268)
T 2r62_A 47 VLLVGPPGTGKTLLAKAVAGE 67 (268)
T ss_dssp CCCBCSSCSSHHHHHHHHHHH
T ss_pred EEEECCCCCcHHHHHHHHHHH
Confidence 568999999999999999873
No 253
>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*
Probab=94.67 E-value=0.024 Score=39.94 Aligned_cols=23 Identities=17% Similarity=0.335 Sum_probs=19.9
Q ss_pred EEEEEcCCCccHHHHHHHHhccc
Q 035574 17 VVAILDSIGLDKTAFTAEAYNSS 39 (156)
Q Consensus 17 vi~I~G~gGvGKTtLa~~vy~~~ 39 (156)
-|.++|..|+|||||...+.++.
T Consensus 6 ki~v~G~~~~GKSsli~~l~~~~ 28 (189)
T 4dsu_A 6 KLVVVGADGVGKSALTIQLIQNH 28 (189)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHHhCC
Confidence 47899999999999999987643
No 254
>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}
Probab=94.66 E-value=0.028 Score=39.21 Aligned_cols=27 Identities=15% Similarity=0.263 Sum_probs=22.1
Q ss_pred CCcEEEEEEcCCCccHHHHHHHHhccc
Q 035574 13 TQLSVVAILDSIGLDKTAFTAEAYNSS 39 (156)
Q Consensus 13 ~~~~vi~I~G~gGvGKTtLa~~vy~~~ 39 (156)
...--|.|+|..|+|||||...+.++.
T Consensus 7 ~~~~~i~v~G~~~~GKssl~~~l~~~~ 33 (181)
T 3tw8_B 7 DHLFKLLIIGDSGVGKSSLLLRFADNT 33 (181)
T ss_dssp CEEEEEEEECCTTSCHHHHHHHHCSCC
T ss_pred CcceEEEEECCCCCCHHHHHHHHhcCC
Confidence 344567899999999999999987643
No 255
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*
Probab=94.65 E-value=0.021 Score=39.32 Aligned_cols=23 Identities=9% Similarity=0.146 Sum_probs=19.6
Q ss_pred EEEEEEcCCCccHHHHHHHHhcc
Q 035574 16 SVVAILDSIGLDKTAFTAEAYNS 38 (156)
Q Consensus 16 ~vi~I~G~gGvGKTtLa~~vy~~ 38 (156)
--|.++|..|+|||||...+..+
T Consensus 7 ~~i~v~G~~~~GKssli~~l~~~ 29 (170)
T 1r2q_A 7 FKLVLLGESAVGKSSLVLRFVKG 29 (170)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHHcC
Confidence 35788999999999999998753
No 256
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=94.65 E-value=0.037 Score=43.64 Aligned_cols=20 Identities=15% Similarity=0.101 Sum_probs=18.7
Q ss_pred EEEEcCCCccHHHHHHHHhc
Q 035574 18 VAILDSIGLDKTAFTAEAYN 37 (156)
Q Consensus 18 i~I~G~gGvGKTtLa~~vy~ 37 (156)
+-++|..|+||||+|+.+..
T Consensus 49 ~ll~Gp~G~GKTtla~~la~ 68 (340)
T 1sxj_C 49 LLFYGPPGTGKTSTIVALAR 68 (340)
T ss_dssp EEEECSSSSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 78999999999999999877
No 257
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=94.64 E-value=0.016 Score=43.49 Aligned_cols=22 Identities=23% Similarity=0.274 Sum_probs=20.2
Q ss_pred EEEEEEcCCCccHHHHHHHHhc
Q 035574 16 SVVAILDSIGLDKTAFTAEAYN 37 (156)
Q Consensus 16 ~vi~I~G~gGvGKTtLa~~vy~ 37 (156)
.+++|+|..|.|||||.+.++.
T Consensus 36 e~~~iiG~NGsGKSTLlk~l~G 57 (214)
T 1sgw_A 36 NVVNFHGPNGIGKTTLLKTIST 57 (214)
T ss_dssp CCEEEECCTTSSHHHHHHHHTT
T ss_pred CEEEEECCCCCCHHHHHHHHhc
Confidence 4789999999999999999977
No 258
>1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ...
Probab=94.64 E-value=0.014 Score=44.55 Aligned_cols=25 Identities=20% Similarity=0.291 Sum_probs=21.7
Q ss_pred CCcEEEEEEcCCCccHHHHHHHHhc
Q 035574 13 TQLSVVAILDSIGLDKTAFTAEAYN 37 (156)
Q Consensus 13 ~~~~vi~I~G~gGvGKTtLa~~vy~ 37 (156)
.....|.|.|..|+||||+++.+.+
T Consensus 22 ~~~~~I~ieG~~GsGKST~~~~L~~ 46 (263)
T 1p5z_B 22 TRIKKISIEGNIAAGKSTFVNILKQ 46 (263)
T ss_dssp -CCEEEEEECSTTSSHHHHHTTTGG
T ss_pred cCceEEEEECCCCCCHHHHHHHHHH
Confidence 3457899999999999999999877
No 259
>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*
Probab=94.64 E-value=0.023 Score=39.68 Aligned_cols=23 Identities=17% Similarity=0.095 Sum_probs=19.8
Q ss_pred EEEEEEcCCCccHHHHHHHHhcc
Q 035574 16 SVVAILDSIGLDKTAFTAEAYNS 38 (156)
Q Consensus 16 ~vi~I~G~gGvGKTtLa~~vy~~ 38 (156)
--|.++|.+|+|||||...+.++
T Consensus 7 ~ki~v~G~~~~GKssl~~~l~~~ 29 (178)
T 2hxs_A 7 LKIVVLGDGASGKTSLTTCFAQE 29 (178)
T ss_dssp EEEEEECCTTSSHHHHHHHHHGG
T ss_pred EEEEEECcCCCCHHHHHHHHHhC
Confidence 45789999999999999988764
No 260
>3hjn_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynth nucleotide-binding, transferase, structural genomics; HET: ADP TYD; 2.10A {Thermotoga maritima}
Probab=94.63 E-value=0.056 Score=39.76 Aligned_cols=20 Identities=10% Similarity=-0.040 Sum_probs=18.6
Q ss_pred EEEEcCCCccHHHHHHHHhc
Q 035574 18 VAILDSIGLDKTAFTAEAYN 37 (156)
Q Consensus 18 i~I~G~gGvGKTtLa~~vy~ 37 (156)
|+|-|.-|+||||.++.+++
T Consensus 3 I~~EG~DGsGKsTq~~~L~~ 22 (197)
T 3hjn_A 3 ITFEGIDGSGKSTQIQLLAQ 22 (197)
T ss_dssp EEEECSTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 78889999999999999988
No 261
>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*
Probab=94.62 E-value=0.022 Score=39.72 Aligned_cols=26 Identities=12% Similarity=0.217 Sum_probs=21.6
Q ss_pred CcEEEEEEcCCCccHHHHHHHHhccc
Q 035574 14 QLSVVAILDSIGLDKTAFTAEAYNSS 39 (156)
Q Consensus 14 ~~~vi~I~G~gGvGKTtLa~~vy~~~ 39 (156)
...-|.|+|..|+|||||...+.+..
T Consensus 14 ~~~~i~v~G~~~~GKSsli~~l~~~~ 39 (179)
T 1z0f_A 14 YIFKYIIIGDMGVGKSCLLHQFTEKK 39 (179)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHSC
T ss_pred cceEEEEECCCCCCHHHHHHHHHcCC
Confidence 34568899999999999999987644
No 262
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=94.62 E-value=0.035 Score=46.96 Aligned_cols=24 Identities=17% Similarity=0.158 Sum_probs=20.0
Q ss_pred CcEEEEEEcCCCccHHHHHHHHhc
Q 035574 14 QLSVVAILDSIGLDKTAFTAEAYN 37 (156)
Q Consensus 14 ~~~vi~I~G~gGvGKTtLa~~vy~ 37 (156)
..++|.|+|.+|+||||++..+..
T Consensus 100 ~~~vI~ivG~~GvGKTTl~~kLA~ 123 (504)
T 2j37_W 100 KQNVIMFVGLQGSGKTTTCSKLAY 123 (504)
T ss_dssp --EEEEEECSTTSSHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 467999999999999999988863
No 263
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=94.61 E-value=0.024 Score=47.98 Aligned_cols=24 Identities=17% Similarity=0.158 Sum_probs=21.6
Q ss_pred CcEEEEEEcCCCccHHHHHHHHhc
Q 035574 14 QLSVVAILDSIGLDKTAFTAEAYN 37 (156)
Q Consensus 14 ~~~vi~I~G~gGvGKTtLa~~vy~ 37 (156)
...++.|+|..|+|||||++.+..
T Consensus 292 ~GeVI~LVGpNGSGKTTLl~~LAg 315 (503)
T 2yhs_A 292 APFVILMVGVNGVGKTTTIGKLAR 315 (503)
T ss_dssp TTEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCeEEEEECCCcccHHHHHHHHHH
Confidence 457999999999999999999876
No 264
>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}
Probab=94.61 E-value=0.037 Score=39.29 Aligned_cols=26 Identities=12% Similarity=0.208 Sum_probs=21.7
Q ss_pred CcEEEEEEcCCCccHHHHHHHHhccc
Q 035574 14 QLSVVAILDSIGLDKTAFTAEAYNSS 39 (156)
Q Consensus 14 ~~~vi~I~G~gGvGKTtLa~~vy~~~ 39 (156)
..--|.|+|..|+|||||...+.++.
T Consensus 15 ~~~ki~v~G~~~~GKSsli~~l~~~~ 40 (196)
T 3tkl_A 15 YLFKLLLIGDSGVGKSCLLLRFADDT 40 (196)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHSC
T ss_pred cceEEEEECcCCCCHHHHHHHHHcCC
Confidence 34568999999999999999987643
No 265
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=94.60 E-value=0.015 Score=48.25 Aligned_cols=23 Identities=22% Similarity=0.225 Sum_probs=20.3
Q ss_pred cEEEEEEcCCCccHHHHHHHHhc
Q 035574 15 LSVVAILDSIGLDKTAFTAEAYN 37 (156)
Q Consensus 15 ~~vi~I~G~gGvGKTtLa~~vy~ 37 (156)
.++|.|+|.+|+||||++..+..
T Consensus 99 ~~vI~ivG~~GvGKTTla~~La~ 121 (432)
T 2v3c_C 99 QNVILLVGIQGSGKTTTAAKLAR 121 (432)
T ss_dssp CCCEEEECCSSSSTTHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 46999999999999999888765
No 266
>4dzz_A Plasmid partitioning protein PARF; deviant walker BOX, DNA segregation, unknown function; HET: ADP; 1.80A {Escherichia coli} PDB: 4e03_A* 4e07_A* 4e09_A*
Probab=94.60 E-value=0.022 Score=41.17 Aligned_cols=23 Identities=22% Similarity=0.242 Sum_probs=18.8
Q ss_pred cEEEEEE-cCCCccHHHHHHHHhc
Q 035574 15 LSVVAIL-DSIGLDKTAFTAEAYN 37 (156)
Q Consensus 15 ~~vi~I~-G~gGvGKTtLa~~vy~ 37 (156)
+++|+|+ +-||+||||+|..+..
T Consensus 1 M~vi~v~s~kgG~GKTt~a~~la~ 24 (206)
T 4dzz_A 1 MKVISFLNPKGGSGKTTAVINIAT 24 (206)
T ss_dssp CEEEEECCSSTTSSHHHHHHHHHH
T ss_pred CeEEEEEeCCCCccHHHHHHHHHH
Confidence 3688888 6689999999888755
No 267
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=94.59 E-value=0.022 Score=45.55 Aligned_cols=22 Identities=9% Similarity=0.188 Sum_probs=20.1
Q ss_pred EEEEEEcCCCccHHHHHHHHhc
Q 035574 16 SVVAILDSIGLDKTAFTAEAYN 37 (156)
Q Consensus 16 ~vi~I~G~gGvGKTtLa~~vy~ 37 (156)
.+|.|+|..|+||||||+.+..
T Consensus 6 ~~i~i~GptGsGKTtla~~La~ 27 (323)
T 3crm_A 6 PAIFLMGPTAAGKTDLAMALAD 27 (323)
T ss_dssp EEEEEECCTTSCHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 5789999999999999999876
No 268
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=94.59 E-value=0.027 Score=44.28 Aligned_cols=23 Identities=17% Similarity=0.153 Sum_probs=20.6
Q ss_pred cEEEEEEcCCCccHHHHHHHHhc
Q 035574 15 LSVVAILDSIGLDKTAFTAEAYN 37 (156)
Q Consensus 15 ~~vi~I~G~gGvGKTtLa~~vy~ 37 (156)
..++.++|.+|+||||++..+..
T Consensus 98 ~~vi~i~G~~G~GKTT~~~~la~ 120 (297)
T 1j8m_F 98 PYVIMLVGVQGTGKTTTAGKLAY 120 (297)
T ss_dssp SEEEEEECSSCSSTTHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 57999999999999999988765
No 269
>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8
Probab=94.58 E-value=0.022 Score=40.22 Aligned_cols=23 Identities=4% Similarity=0.073 Sum_probs=19.8
Q ss_pred EEEEEcCCCccHHHHHHHHhccc
Q 035574 17 VVAILDSIGLDKTAFTAEAYNSS 39 (156)
Q Consensus 17 vi~I~G~gGvGKTtLa~~vy~~~ 39 (156)
-|.++|.+|+|||||...+.+..
T Consensus 3 ki~v~G~~~~GKSsli~~l~~~~ 25 (190)
T 2cxx_A 3 TIIFAGRSNVGKSTLIYRLTGKK 25 (190)
T ss_dssp EEEEEEBTTSSHHHHHHHHHSCC
T ss_pred EEEEECCCCCCHHHHHHHHhCcC
Confidence 47899999999999999987753
No 270
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=94.58 E-value=0.021 Score=43.81 Aligned_cols=22 Identities=14% Similarity=0.280 Sum_probs=20.2
Q ss_pred EEEEEEcCCCccHHHHHHHHhc
Q 035574 16 SVVAILDSIGLDKTAFTAEAYN 37 (156)
Q Consensus 16 ~vi~I~G~gGvGKTtLa~~vy~ 37 (156)
.+++|+|..|.|||||.+.+..
T Consensus 27 e~~~liG~NGsGKSTLlk~l~G 48 (249)
T 2qi9_C 27 EILHLVGPNGAGKSTLLARMAG 48 (249)
T ss_dssp CEEEEECCTTSSHHHHHHHHTT
T ss_pred CEEEEECCCCCcHHHHHHHHhC
Confidence 5789999999999999999876
No 271
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A
Probab=94.58 E-value=0.022 Score=39.30 Aligned_cols=23 Identities=9% Similarity=0.235 Sum_probs=19.8
Q ss_pred EEEEEEcCCCccHHHHHHHHhcc
Q 035574 16 SVVAILDSIGLDKTAFTAEAYNS 38 (156)
Q Consensus 16 ~vi~I~G~gGvGKTtLa~~vy~~ 38 (156)
--|.++|..|+|||||...+..+
T Consensus 4 ~~i~v~G~~~~GKssli~~l~~~ 26 (170)
T 1g16_A 4 MKILLIGDSGVGKSCLLVRFVED 26 (170)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHC
T ss_pred eEEEEECcCCCCHHHHHHHHHhC
Confidence 45789999999999999998754
No 272
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=94.58 E-value=0.021 Score=45.11 Aligned_cols=23 Identities=9% Similarity=0.131 Sum_probs=20.8
Q ss_pred cEEEEEEcCCCccHHHHHHHHhc
Q 035574 15 LSVVAILDSIGLDKTAFTAEAYN 37 (156)
Q Consensus 15 ~~vi~I~G~gGvGKTtLa~~vy~ 37 (156)
.+-+-++|.+|+|||+||+.+++
T Consensus 45 ~~~iLL~GppGtGKT~la~ala~ 67 (322)
T 1xwi_A 45 WRGILLFGPPGTGKSYLAKAVAT 67 (322)
T ss_dssp CSEEEEESSSSSCHHHHHHHHHH
T ss_pred CceEEEECCCCccHHHHHHHHHH
Confidence 46678999999999999999988
No 273
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=94.56 E-value=0.021 Score=44.54 Aligned_cols=23 Identities=13% Similarity=-0.061 Sum_probs=20.6
Q ss_pred cEEEEEEcCCCccHHHHHHHHhc
Q 035574 15 LSVVAILDSIGLDKTAFTAEAYN 37 (156)
Q Consensus 15 ~~vi~I~G~gGvGKTtLa~~vy~ 37 (156)
-.+++|+|..|.|||||.+.+..
T Consensus 47 Ge~~~liG~NGsGKSTLlk~l~G 69 (279)
T 2ihy_A 47 GDKWILYGLNGAGKTTLLNILNA 69 (279)
T ss_dssp TCEEEEECCTTSSHHHHHHHHTT
T ss_pred CCEEEEECCCCCcHHHHHHHHhC
Confidence 35789999999999999999876
No 274
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=94.56 E-value=0.021 Score=43.80 Aligned_cols=22 Identities=18% Similarity=0.300 Sum_probs=20.3
Q ss_pred EEEEEEcCCCccHHHHHHHHhc
Q 035574 16 SVVAILDSIGLDKTAFTAEAYN 37 (156)
Q Consensus 16 ~vi~I~G~gGvGKTtLa~~vy~ 37 (156)
.+++|+|..|.|||||.+.+..
T Consensus 32 e~~~l~G~nGsGKSTLl~~l~G 53 (253)
T 2nq2_C 32 DILAVLGQNGCGKSTLLDLLLG 53 (253)
T ss_dssp CEEEEECCSSSSHHHHHHHHTT
T ss_pred CEEEEECCCCCCHHHHHHHHhC
Confidence 5789999999999999999976
No 275
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=94.54 E-value=0.02 Score=43.96 Aligned_cols=22 Identities=14% Similarity=0.274 Sum_probs=19.6
Q ss_pred EEEEEEcCCCccHHHHHHHHhc
Q 035574 16 SVVAILDSIGLDKTAFTAEAYN 37 (156)
Q Consensus 16 ~vi~I~G~gGvGKTtLa~~vy~ 37 (156)
.-+-++|.+|+|||++|+.+.+
T Consensus 51 ~~vll~G~~GtGKT~la~~la~ 72 (310)
T 1ofh_A 51 KNILMIGPTGVGKTEIARRLAK 72 (310)
T ss_dssp CCEEEECCTTSSHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHH
Confidence 4567999999999999999987
No 276
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*
Probab=94.54 E-value=0.038 Score=38.53 Aligned_cols=26 Identities=19% Similarity=0.305 Sum_probs=21.8
Q ss_pred CCcEEEEEEcCCCccHHHHHHHHhcc
Q 035574 13 TQLSVVAILDSIGLDKTAFTAEAYNS 38 (156)
Q Consensus 13 ~~~~vi~I~G~gGvGKTtLa~~vy~~ 38 (156)
....-|.++|..|+|||||...+.+.
T Consensus 7 ~~~~~i~v~G~~~~GKssli~~l~~~ 32 (181)
T 2fn4_A 7 SETHKLVVVGGGGVGKSALTIQFIQS 32 (181)
T ss_dssp SCEEEEEEEECTTSSHHHHHHHHHHS
T ss_pred CCceEEEEECCCCCCHHHHHHHHHhC
Confidence 34557899999999999999998765
No 277
>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*
Probab=94.53 E-value=0.027 Score=39.47 Aligned_cols=25 Identities=28% Similarity=0.324 Sum_probs=20.8
Q ss_pred cEEEEEEcCCCccHHHHHHHHhccc
Q 035574 15 LSVVAILDSIGLDKTAFTAEAYNSS 39 (156)
Q Consensus 15 ~~vi~I~G~gGvGKTtLa~~vy~~~ 39 (156)
..-|.++|..|+|||||...+.++.
T Consensus 18 ~~ki~v~G~~~~GKSsli~~l~~~~ 42 (187)
T 2a9k_A 18 LHKVIMVGSGGVGKSALTLQFMYDE 42 (187)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSC
T ss_pred ceEEEEECCCCCCHHHHHHHHhhCC
Confidence 3467899999999999999987643
No 278
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*
Probab=94.53 E-value=0.023 Score=39.65 Aligned_cols=24 Identities=21% Similarity=0.264 Sum_probs=20.4
Q ss_pred cEEEEEEcCCCccHHHHHHHHhcc
Q 035574 15 LSVVAILDSIGLDKTAFTAEAYNS 38 (156)
Q Consensus 15 ~~vi~I~G~gGvGKTtLa~~vy~~ 38 (156)
.--|.++|.+|+|||||...+...
T Consensus 7 ~~~i~v~G~~~~GKSsli~~l~~~ 30 (177)
T 1wms_A 7 LFKVILLGDGGVGKSSLMNRYVTN 30 (177)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHHS
T ss_pred eeEEEEECCCCCCHHHHHHHHHcC
Confidence 346789999999999999998754
No 279
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=94.51 E-value=0.024 Score=45.71 Aligned_cols=22 Identities=9% Similarity=0.323 Sum_probs=20.5
Q ss_pred EEEEEEcCCCccHHHHHHHHhc
Q 035574 16 SVVAILDSIGLDKTAFTAEAYN 37 (156)
Q Consensus 16 ~vi~I~G~gGvGKTtLa~~vy~ 37 (156)
.+|.|+|+.|+|||||+..+..
T Consensus 41 ~lIvI~GPTgsGKTtLa~~LA~ 62 (339)
T 3a8t_A 41 KLLVLMGATGTGKSRLSIDLAA 62 (339)
T ss_dssp EEEEEECSTTSSHHHHHHHHHT
T ss_pred ceEEEECCCCCCHHHHHHHHHH
Confidence 5899999999999999999987
No 280
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=94.49 E-value=0.023 Score=44.06 Aligned_cols=21 Identities=14% Similarity=0.412 Sum_probs=18.8
Q ss_pred EEEEEcCCCccHHHHHHHHhc
Q 035574 17 VVAILDSIGLDKTAFTAEAYN 37 (156)
Q Consensus 17 vi~I~G~gGvGKTtLa~~vy~ 37 (156)
.++|+|..|.|||||.+.++.
T Consensus 4 ~v~lvG~nGaGKSTLln~L~g 24 (270)
T 3sop_A 4 NIMVVGQSGLGKSTLVNTLFK 24 (270)
T ss_dssp EEEEEESSSSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhC
Confidence 478999999999999998875
No 281
>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...
Probab=94.48 E-value=0.029 Score=39.42 Aligned_cols=23 Identities=9% Similarity=0.055 Sum_probs=19.5
Q ss_pred EEEEEEcCCCccHHHHHHHHhcc
Q 035574 16 SVVAILDSIGLDKTAFTAEAYNS 38 (156)
Q Consensus 16 ~vi~I~G~gGvGKTtLa~~vy~~ 38 (156)
--|.++|.+|+|||||...+.++
T Consensus 6 ~~i~~~G~~~~GKssl~~~l~~~ 28 (186)
T 1mh1_A 6 IKCVVVGDGAVGKTCLLISYTTN 28 (186)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHHcC
Confidence 35788999999999999988754
No 282
>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}
Probab=94.47 E-value=0.024 Score=40.60 Aligned_cols=24 Identities=29% Similarity=0.285 Sum_probs=20.1
Q ss_pred cEEEEEEcCCCccHHHHHHHHhcc
Q 035574 15 LSVVAILDSIGLDKTAFTAEAYNS 38 (156)
Q Consensus 15 ~~vi~I~G~gGvGKTtLa~~vy~~ 38 (156)
.--|.++|.+|+|||||...+.++
T Consensus 21 ~~ki~vvG~~~vGKTsLi~~l~~~ 44 (187)
T 3c5c_A 21 EVNLAILGRRGAGKSALTVKFLTK 44 (187)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHHS
T ss_pred eEEEEEECCCCCcHHHHHHHHHhC
Confidence 345789999999999999888664
No 283
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=94.47 E-value=0.04 Score=43.66 Aligned_cols=25 Identities=8% Similarity=0.138 Sum_probs=21.2
Q ss_pred CCcEEEEEEcCCCccHHHHHHHHhc
Q 035574 13 TQLSVVAILDSIGLDKTAFTAEAYN 37 (156)
Q Consensus 13 ~~~~vi~I~G~gGvGKTtLa~~vy~ 37 (156)
..-.+++|+|..|.|||||++.+..
T Consensus 124 ~~Ge~vaIvGpsGsGKSTLl~lL~g 148 (305)
T 2v9p_A 124 PKKNCLAFIGPPNTGKSMLCNSLIH 148 (305)
T ss_dssp TTCSEEEEECSSSSSHHHHHHHHHH
T ss_pred cCCCEEEEECCCCCcHHHHHHHHhh
Confidence 3457899999999999999998753
No 284
>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*
Probab=94.46 E-value=0.082 Score=39.43 Aligned_cols=23 Identities=13% Similarity=-0.035 Sum_probs=20.8
Q ss_pred cEEEEEEcCCCccHHHHHHHHhc
Q 035574 15 LSVVAILDSIGLDKTAFTAEAYN 37 (156)
Q Consensus 15 ~~vi~I~G~gGvGKTtLa~~vy~ 37 (156)
-..|.+.|..|.||||+++.+.+
T Consensus 6 g~~i~~eG~~gsGKsT~~~~l~~ 28 (213)
T 4edh_A 6 GLFVTLEGPEGAGKSTNRDYLAE 28 (213)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHH
T ss_pred ceEEEEEcCCCCCHHHHHHHHHH
Confidence 35789999999999999999987
No 285
>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*
Probab=94.46 E-value=0.025 Score=39.16 Aligned_cols=24 Identities=21% Similarity=0.043 Sum_probs=20.5
Q ss_pred cEEEEEEcCCCccHHHHHHHHhcc
Q 035574 15 LSVVAILDSIGLDKTAFTAEAYNS 38 (156)
Q Consensus 15 ~~vi~I~G~gGvGKTtLa~~vy~~ 38 (156)
..-|.++|..|+|||||...+..+
T Consensus 7 ~~~i~v~G~~~~GKssl~~~l~~~ 30 (171)
T 1upt_A 7 EMRILILGLDGAGKTTILYRLQVG 30 (171)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHS
T ss_pred ccEEEEECCCCCCHHHHHHHHhcC
Confidence 356889999999999999998653
No 286
>4hlc_A DTMP kinase, thymidylate kinase; TMK, MRSA, pipiridine, transfera transferase inhibitor complex; HET: T05; 1.55A {Staphylococcus aureus subsp} PDB: 2cck_A 4gfd_A* 4gsy_A* 4hdc_A* 4hej_A* 2ccj_A* 4hld_A* 2ccg_A*
Probab=94.45 E-value=0.034 Score=41.27 Aligned_cols=30 Identities=20% Similarity=0.329 Sum_probs=23.8
Q ss_pred EEEEEEcCCCccHHHHHHHHhccccccccCce
Q 035574 16 SVVAILDSIGLDKTAFTAEAYNSSYMKHYFDY 47 (156)
Q Consensus 16 ~vi~I~G~gGvGKTtLa~~vy~~~~v~~~F~~ 47 (156)
.-|+|-|.-|+||||+++.+.+ +....++.
T Consensus 3 kFI~~EG~dGsGKsTq~~~L~~--~L~~~~~v 32 (205)
T 4hlc_A 3 AFITFEGPEGSGKTTVINEVYH--RLVKDYDV 32 (205)
T ss_dssp EEEEEECCTTSCHHHHHHHHHH--HHTTTSCE
T ss_pred CEEEEECCCCCcHHHHHHHHHH--HHHCCCCE
Confidence 4688999999999999999988 44444554
No 287
>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=94.44 E-value=0.029 Score=40.89 Aligned_cols=27 Identities=15% Similarity=0.065 Sum_probs=22.3
Q ss_pred CCcEEEEEEcCCCccHHHHHHHHhccc
Q 035574 13 TQLSVVAILDSIGLDKTAFTAEAYNSS 39 (156)
Q Consensus 13 ~~~~vi~I~G~gGvGKTtLa~~vy~~~ 39 (156)
.....|.++|.+|+|||||...+....
T Consensus 10 ~~~~~i~~~G~~g~GKTsl~~~l~~~~ 36 (218)
T 1nrj_B 10 SYQPSIIIAGPQNSGKTSLLTLLTTDS 36 (218)
T ss_dssp CCCCEEEEECSTTSSHHHHHHHHHHSS
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 345678899999999999999987643
No 288
>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*
Probab=94.44 E-value=0.025 Score=39.92 Aligned_cols=24 Identities=13% Similarity=0.206 Sum_probs=20.5
Q ss_pred cEEEEEEcCCCccHHHHHHHHhcc
Q 035574 15 LSVVAILDSIGLDKTAFTAEAYNS 38 (156)
Q Consensus 15 ~~vi~I~G~gGvGKTtLa~~vy~~ 38 (156)
.--|.++|..|+|||||...+.++
T Consensus 10 ~~ki~v~G~~~~GKSsli~~l~~~ 33 (186)
T 2bme_A 10 LFKFLVIGNAGTGKSCLLHQFIEK 33 (186)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHS
T ss_pred ceEEEEECCCCCCHHHHHHHHHcC
Confidence 456789999999999999998764
No 289
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...
Probab=94.44 E-value=0.024 Score=39.04 Aligned_cols=21 Identities=10% Similarity=-0.015 Sum_probs=18.5
Q ss_pred EEEEcCCCccHHHHHHHHhcc
Q 035574 18 VAILDSIGLDKTAFTAEAYNS 38 (156)
Q Consensus 18 i~I~G~gGvGKTtLa~~vy~~ 38 (156)
|.++|.+|+|||||...+.++
T Consensus 3 i~~~G~~~~GKssl~~~l~~~ 23 (164)
T 1r8s_A 3 ILMVGLDAAGKTTILYKLKLG 23 (164)
T ss_dssp EEEECSTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHcC
Confidence 689999999999999998653
No 290
>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A
Probab=94.42 E-value=0.02 Score=40.17 Aligned_cols=23 Identities=9% Similarity=0.111 Sum_probs=19.8
Q ss_pred EEEEEEcCCCccHHHHHHHHhcc
Q 035574 16 SVVAILDSIGLDKTAFTAEAYNS 38 (156)
Q Consensus 16 ~vi~I~G~gGvGKTtLa~~vy~~ 38 (156)
--|.++|.+|+|||||...+.++
T Consensus 8 ~ki~~vG~~~vGKTsli~~l~~~ 30 (178)
T 2iwr_A 8 LRLGVLGDARSGKSSLIHRFLTG 30 (178)
T ss_dssp EEEEEECCGGGCHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHhC
Confidence 35789999999999999998764
No 291
>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0
Probab=94.42 E-value=0.025 Score=40.50 Aligned_cols=24 Identities=17% Similarity=0.178 Sum_probs=19.7
Q ss_pred cEEEEEEcCCCccHHHHHHHHhcc
Q 035574 15 LSVVAILDSIGLDKTAFTAEAYNS 38 (156)
Q Consensus 15 ~~vi~I~G~gGvGKTtLa~~vy~~ 38 (156)
.--|.|+|.+|+|||||...+.++
T Consensus 20 ~~ki~ivG~~~vGKSsL~~~~~~~ 43 (184)
T 3ihw_A 20 ELKVGIVGNLSSGKSALVHRYLTG 43 (184)
T ss_dssp EEEEEEECCTTSCHHHHHHHHHHS
T ss_pred eeEEEEECCCCCCHHHHHHHHhcC
Confidence 346789999999999999877654
No 292
>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*
Probab=94.41 E-value=0.026 Score=39.34 Aligned_cols=23 Identities=13% Similarity=0.131 Sum_probs=19.7
Q ss_pred EEEEEEcCCCccHHHHHHHHhcc
Q 035574 16 SVVAILDSIGLDKTAFTAEAYNS 38 (156)
Q Consensus 16 ~vi~I~G~gGvGKTtLa~~vy~~ 38 (156)
--|.|+|..|+|||||...+..+
T Consensus 15 ~~i~v~G~~~~GKssli~~l~~~ 37 (179)
T 2y8e_A 15 FKLVFLGEQSVGKTSLITRFMYD 37 (179)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHcC
Confidence 45788999999999999998753
No 293
>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}
Probab=94.40 E-value=0.03 Score=40.16 Aligned_cols=26 Identities=27% Similarity=0.309 Sum_probs=21.3
Q ss_pred CcEEEEEEcCCCccHHHHHHHHhccc
Q 035574 14 QLSVVAILDSIGLDKTAFTAEAYNSS 39 (156)
Q Consensus 14 ~~~vi~I~G~gGvGKTtLa~~vy~~~ 39 (156)
...-|.|+|..|+|||||...+..+.
T Consensus 13 ~~~ki~v~G~~~~GKSsli~~l~~~~ 38 (206)
T 2bov_A 13 ALHKVIMVGSGGVGKSALTLQFMYDE 38 (206)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHSC
T ss_pred ceEEEEEECCCCCCHHHHHHHHHhCC
Confidence 34567899999999999999987543
No 294
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=94.39 E-value=0.029 Score=43.27 Aligned_cols=24 Identities=13% Similarity=0.288 Sum_probs=20.8
Q ss_pred CcEEEEEEcCCCccHHHHHHHHhc
Q 035574 14 QLSVVAILDSIGLDKTAFTAEAYN 37 (156)
Q Consensus 14 ~~~vi~I~G~gGvGKTtLa~~vy~ 37 (156)
.-.++.|+|..|.|||||.+.+..
T Consensus 24 ~g~~v~i~Gp~GsGKSTll~~l~g 47 (261)
T 2eyu_A 24 KMGLILVTGPTGSGKSTTIASMID 47 (261)
T ss_dssp SSEEEEEECSTTCSHHHHHHHHHH
T ss_pred CCCEEEEECCCCccHHHHHHHHHH
Confidence 456899999999999999988755
No 295
>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*
Probab=94.39 E-value=0.025 Score=40.61 Aligned_cols=23 Identities=17% Similarity=0.046 Sum_probs=20.1
Q ss_pred EEEEEEcCCCccHHHHHHHHhcc
Q 035574 16 SVVAILDSIGLDKTAFTAEAYNS 38 (156)
Q Consensus 16 ~vi~I~G~gGvGKTtLa~~vy~~ 38 (156)
..|.++|.+|+|||||...+.++
T Consensus 24 ~ki~~vG~~~vGKSsli~~l~~~ 46 (190)
T 1m2o_B 24 GKLLFLGLDNAGKTTLLHMLKND 46 (190)
T ss_dssp CEEEEEESTTSSHHHHHHHHHHS
T ss_pred cEEEEECCCCCCHHHHHHHHhcC
Confidence 46789999999999999998763
No 296
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}
Probab=94.38 E-value=0.14 Score=42.19 Aligned_cols=60 Identities=17% Similarity=0.010 Sum_probs=39.2
Q ss_pred HhcCCCCcEEEEEEcCCCccHHHHHHHHhccccccccCceEEEEEcCCCCCHHHHHHHHHHHh
Q 035574 8 LIEGPTQLSVVAILDSIGLDKTAFTAEAYNSSYMKHYFDYLAWIPAPYHYDPDQILDIVAVIL 70 (156)
Q Consensus 8 L~~~~~~~~vi~I~G~gGvGKTtLa~~vy~~~~v~~~F~~~~wv~vs~~~~~~~l~~~il~~l 70 (156)
++.+-..-.++-|.|.+|+||||||.++..+...... ...+|++.. .+..++...++...
T Consensus 193 ~lgGl~~G~l~ii~G~pg~GKT~lal~ia~~~a~~~g-~~vl~~slE--~~~~~l~~R~~~~~ 252 (444)
T 2q6t_A 193 LIGTLGPGSLNIIAARPAMGKTAFALTIAQNAALKEG-VGVGIYSLE--MPAAQLTLRMMCSE 252 (444)
T ss_dssp HHCCCCTTCEEEEEECTTSCHHHHHHHHHHHHHHTTC-CCEEEEESS--SCHHHHHHHHHHHH
T ss_pred hcCCcCCCcEEEEEeCCCCCHHHHHHHHHHHHHHhCC-CeEEEEECC--CCHHHHHHHHHHHH
Confidence 3333344578899999999999999998774322111 246666553 55677777776543
No 297
>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*
Probab=94.38 E-value=0.034 Score=39.17 Aligned_cols=24 Identities=21% Similarity=0.189 Sum_probs=20.5
Q ss_pred cEEEEEEcCCCccHHHHHHHHhcc
Q 035574 15 LSVVAILDSIGLDKTAFTAEAYNS 38 (156)
Q Consensus 15 ~~vi~I~G~gGvGKTtLa~~vy~~ 38 (156)
.--|.|+|..|+|||||...+.+.
T Consensus 11 ~~ki~v~G~~~~GKSsli~~l~~~ 34 (195)
T 3bc1_A 11 LIKFLALGDSGVGKTSVLYQYTDG 34 (195)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEEECCCCCCHHHHHHHHhcC
Confidence 456789999999999999998764
No 298
>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*
Probab=94.36 E-value=0.034 Score=38.91 Aligned_cols=23 Identities=13% Similarity=0.323 Sum_probs=19.9
Q ss_pred EEEEEEcCCCccHHHHHHHHhcc
Q 035574 16 SVVAILDSIGLDKTAFTAEAYNS 38 (156)
Q Consensus 16 ~vi~I~G~gGvGKTtLa~~vy~~ 38 (156)
--|.++|.+|+|||||...+..+
T Consensus 13 ~ki~v~G~~~~GKSsli~~l~~~ 35 (181)
T 2efe_B 13 AKLVLLGDVGAGKSSLVLRFVKD 35 (181)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHC
T ss_pred eEEEEECcCCCCHHHHHHHHHcC
Confidence 45789999999999999998764
No 299
>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C
Probab=94.32 E-value=0.028 Score=39.43 Aligned_cols=23 Identities=9% Similarity=0.007 Sum_probs=19.8
Q ss_pred EEEEEEcCCCccHHHHHHHHhcc
Q 035574 16 SVVAILDSIGLDKTAFTAEAYNS 38 (156)
Q Consensus 16 ~vi~I~G~gGvGKTtLa~~vy~~ 38 (156)
--|.++|.+|+|||||...+..+
T Consensus 9 ~ki~v~G~~~~GKssl~~~~~~~ 31 (182)
T 3bwd_D 9 IKCVTVGDGAVGKTCLLISYTSN 31 (182)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHhcC
Confidence 35789999999999999998764
No 300
>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}
Probab=94.31 E-value=0.027 Score=40.14 Aligned_cols=24 Identities=17% Similarity=0.252 Sum_probs=20.6
Q ss_pred cEEEEEEcCCCccHHHHHHHHhcc
Q 035574 15 LSVVAILDSIGLDKTAFTAEAYNS 38 (156)
Q Consensus 15 ~~vi~I~G~gGvGKTtLa~~vy~~ 38 (156)
.--|.|+|..|+|||||...+...
T Consensus 25 ~~ki~v~G~~~~GKSsLi~~l~~~ 48 (193)
T 2oil_A 25 VFKVVLIGESGVGKTNLLSRFTRN 48 (193)
T ss_dssp EEEEEEESSTTSSHHHHHHHHHHS
T ss_pred ceEEEEECcCCCCHHHHHHHHhcC
Confidence 456789999999999999988764
No 301
>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=94.30 E-value=0.036 Score=38.74 Aligned_cols=25 Identities=16% Similarity=0.210 Sum_probs=20.8
Q ss_pred cEEEEEEcCCCccHHHHHHHHhccc
Q 035574 15 LSVVAILDSIGLDKTAFTAEAYNSS 39 (156)
Q Consensus 15 ~~vi~I~G~gGvGKTtLa~~vy~~~ 39 (156)
.--|.++|..|+|||||...+.+..
T Consensus 10 ~~~i~v~G~~~~GKssli~~l~~~~ 34 (180)
T 2g6b_A 10 AFKVMLVGDSGVGKTCLLVRFKDGA 34 (180)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSC
T ss_pred ceEEEEECcCCCCHHHHHHHHHhCC
Confidence 3467899999999999999987643
No 302
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1
Probab=94.30 E-value=0.024 Score=44.75 Aligned_cols=25 Identities=20% Similarity=0.308 Sum_probs=22.2
Q ss_pred CcEEEEEEcCCCccHHHHHHHHhcc
Q 035574 14 QLSVVAILDSIGLDKTAFTAEAYNS 38 (156)
Q Consensus 14 ~~~vi~I~G~gGvGKTtLa~~vy~~ 38 (156)
.+.++.|.|+.|.|||||.+.+...
T Consensus 3 ~i~v~~i~G~~GaGKTTll~~l~~~ 27 (318)
T 1nij_A 3 PIAVTLLTGFLGAGKTTLLRHILNE 27 (318)
T ss_dssp CEEEEEEEESSSSSCHHHHHHHHHS
T ss_pred cccEEEEEecCCCCHHHHHHHHHhh
Confidence 4678999999999999999999853
No 303
>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*
Probab=94.29 E-value=0.021 Score=41.37 Aligned_cols=24 Identities=13% Similarity=0.022 Sum_probs=20.3
Q ss_pred cEEEEEEcCCCccHHHHHHHHhcc
Q 035574 15 LSVVAILDSIGLDKTAFTAEAYNS 38 (156)
Q Consensus 15 ~~vi~I~G~gGvGKTtLa~~vy~~ 38 (156)
...|.++|.+|+|||||...+.++
T Consensus 25 ~~ki~lvG~~~vGKSsLi~~l~~~ 48 (198)
T 1f6b_A 25 TGKLVFLGLDNAGKTTLLHMLKDD 48 (198)
T ss_dssp CEEEEEEEETTSSHHHHHHHHSCC
T ss_pred CcEEEEECCCCCCHHHHHHHHhcC
Confidence 345789999999999999998753
No 304
>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2
Probab=94.28 E-value=0.032 Score=40.48 Aligned_cols=25 Identities=12% Similarity=0.042 Sum_probs=20.6
Q ss_pred cEEEEEEcCCCccHHHHHHHHhccc
Q 035574 15 LSVVAILDSIGLDKTAFTAEAYNSS 39 (156)
Q Consensus 15 ~~vi~I~G~gGvGKTtLa~~vy~~~ 39 (156)
...|.++|.+|+|||||...+.++.
T Consensus 7 ~~ki~vvG~~~~GKTsli~~l~~~~ 31 (214)
T 2fh5_B 7 QRAVLFVGLCDSGKTLLFVRLLTGQ 31 (214)
T ss_dssp -CEEEEECSTTSSHHHHHHHHHHSC
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCC
Confidence 4567899999999999999987643
No 305
>3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A* 2j3e_A*
Probab=94.27 E-value=0.061 Score=40.95 Aligned_cols=28 Identities=14% Similarity=0.143 Sum_probs=22.9
Q ss_pred CCCcEEEEEEcCCCccHHHHHHHHhccc
Q 035574 12 PTQLSVVAILDSIGLDKTAFTAEAYNSS 39 (156)
Q Consensus 12 ~~~~~vi~I~G~gGvGKTtLa~~vy~~~ 39 (156)
......|.++|..|+|||||...+....
T Consensus 33 ~~~~~~I~lvG~~g~GKSSLin~l~~~~ 60 (262)
T 3def_A 33 DMNSMTVLVLGKGGVGKSSTVNSLIGEQ 60 (262)
T ss_dssp TCCEEEEEEEECTTSSHHHHHHHHHTSC
T ss_pred cCCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 3345678999999999999999987654
No 306
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=94.27 E-value=0.023 Score=46.87 Aligned_cols=24 Identities=21% Similarity=0.263 Sum_probs=21.7
Q ss_pred CcEEEEEEcCCCccHHHHHHHHhc
Q 035574 14 QLSVVAILDSIGLDKTAFTAEAYN 37 (156)
Q Consensus 14 ~~~vi~I~G~gGvGKTtLa~~vy~ 37 (156)
...+++|+|..|+|||||.+.+..
T Consensus 68 ~~~~valvG~nGaGKSTLln~L~G 91 (413)
T 1tq4_A 68 SVLNVAVTGETGSGKSSFINTLRG 91 (413)
T ss_dssp CCEEEEEEECTTSSHHHHHHHHHT
T ss_pred CCeEEEEECCCCCcHHHHHHHHhC
Confidence 456899999999999999999977
No 307
>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}
Probab=94.26 E-value=0.028 Score=39.77 Aligned_cols=24 Identities=8% Similarity=0.088 Sum_probs=20.7
Q ss_pred cEEEEEEcCCCccHHHHHHHHhcc
Q 035574 15 LSVVAILDSIGLDKTAFTAEAYNS 38 (156)
Q Consensus 15 ~~vi~I~G~gGvGKTtLa~~vy~~ 38 (156)
.--|.|+|..|+|||||...+...
T Consensus 7 ~~ki~v~G~~~~GKSsli~~l~~~ 30 (208)
T 3clv_A 7 SYKTVLLGESSVGKSSIVLRLTKD 30 (208)
T ss_dssp SEEEEEECCTTSSHHHHHHHHHHS
T ss_pred ceEEEEECCCCCCHHHHHHHHHhC
Confidence 345789999999999999999875
No 308
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=94.25 E-value=0.05 Score=44.10 Aligned_cols=44 Identities=18% Similarity=0.128 Sum_probs=30.7
Q ss_pred CcEEEEEEcCCCccHHHHHHHHhccccccccCceEEEEEcCCCCCH
Q 035574 14 QLSVVAILDSIGLDKTAFTAEAYNSSYMKHYFDYLAWIPAPYHYDP 59 (156)
Q Consensus 14 ~~~vi~I~G~gGvGKTtLa~~vy~~~~v~~~F~~~~wv~vs~~~~~ 59 (156)
.-+++-|.|.+|+||||||.++.... ...=...+|+.....++.
T Consensus 73 ~G~li~I~G~pGsGKTtlal~la~~~--~~~g~~vlyi~~E~s~~~ 116 (366)
T 1xp8_A 73 RGRITEIYGPESGGKTTLALAIVAQA--QKAGGTCAFIDAEHALDP 116 (366)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHH--HHTTCCEEEEESSCCCCH
T ss_pred CCcEEEEEcCCCCChHHHHHHHHHHH--HHCCCeEEEEECCCChhH
Confidence 34688889999999999999886632 211134778877665543
No 309
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=94.25 E-value=0.031 Score=39.79 Aligned_cols=22 Identities=18% Similarity=0.181 Sum_probs=19.4
Q ss_pred EEEEEEcCCCccHHHHHHHHhc
Q 035574 16 SVVAILDSIGLDKTAFTAEAYN 37 (156)
Q Consensus 16 ~vi~I~G~gGvGKTtLa~~vy~ 37 (156)
.+..|+|..|.|||||+..++-
T Consensus 27 g~~~i~G~NGsGKStll~ai~~ 48 (182)
T 3kta_A 27 GFTAIVGANGSGKSNIGDAILF 48 (182)
T ss_dssp SEEEEEECTTSSHHHHHHHHHH
T ss_pred CcEEEECCCCCCHHHHHHHHHH
Confidence 3789999999999999998854
No 310
>4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927}
Probab=94.25 E-value=0.034 Score=39.60 Aligned_cols=27 Identities=11% Similarity=-0.022 Sum_probs=22.3
Q ss_pred CCcEEEEEEcCCCccHHHHHHHHhccc
Q 035574 13 TQLSVVAILDSIGLDKTAFTAEAYNSS 39 (156)
Q Consensus 13 ~~~~vi~I~G~gGvGKTtLa~~vy~~~ 39 (156)
.....|.|+|..|+|||||...+.++.
T Consensus 15 ~~~~ki~v~G~~~~GKSsl~~~l~~~~ 41 (199)
T 4bas_A 15 KTKLQVVMCGLDNSGKTTIINQVKPAQ 41 (199)
T ss_dssp -CEEEEEEECCTTSCHHHHHHHHSCCC
T ss_pred CCCcEEEEECCCCCCHHHHHHHHhcCC
Confidence 445678999999999999999987643
No 311
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=94.25 E-value=0.021 Score=45.81 Aligned_cols=23 Identities=13% Similarity=0.150 Sum_probs=20.1
Q ss_pred EEEEEEcCCCccHHHHHHHHhcc
Q 035574 16 SVVAILDSIGLDKTAFTAEAYNS 38 (156)
Q Consensus 16 ~vi~I~G~gGvGKTtLa~~vy~~ 38 (156)
+-+-++|.+|+|||+||+.+++.
T Consensus 85 ~~iLL~GppGtGKT~la~ala~~ 107 (355)
T 2qp9_X 85 SGILLYGPPGTGKSYLAKAVATE 107 (355)
T ss_dssp CCEEEECSTTSCHHHHHHHHHHH
T ss_pred ceEEEECCCCCcHHHHHHHHHHH
Confidence 44778999999999999999883
No 312
>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6
Probab=94.25 E-value=0.013 Score=45.96 Aligned_cols=24 Identities=8% Similarity=0.171 Sum_probs=18.1
Q ss_pred CcEEEEEEcCCCccHHHHHHHHhc
Q 035574 14 QLSVVAILDSIGLDKTAFTAEAYN 37 (156)
Q Consensus 14 ~~~vi~I~G~gGvGKTtLa~~vy~ 37 (156)
...+|+|.|..|.||||+|+.+.+
T Consensus 4 ~~~iIgItG~sGSGKSTva~~L~~ 27 (290)
T 1a7j_A 4 KHPIISVTGSSGAGTSTVKHTFDQ 27 (290)
T ss_dssp TSCEEEEESCC---CCTHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHH
Confidence 356899999999999999998866
No 313
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20
Probab=94.24 E-value=0.024 Score=45.41 Aligned_cols=23 Identities=17% Similarity=0.200 Sum_probs=20.2
Q ss_pred cEEEEEEcCCCccHHHHHHHHhc
Q 035574 15 LSVVAILDSIGLDKTAFTAEAYN 37 (156)
Q Consensus 15 ~~vi~I~G~gGvGKTtLa~~vy~ 37 (156)
...+-++|.+|+|||++|+.+.+
T Consensus 72 ~~~ill~Gp~GtGKT~la~~la~ 94 (376)
T 1um8_A 72 KSNILLIGPTGSGKTLMAQTLAK 94 (376)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHH
T ss_pred CCCEEEECCCCCCHHHHHHHHHH
Confidence 34578999999999999999987
No 314
>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A*
Probab=94.24 E-value=0.029 Score=40.41 Aligned_cols=23 Identities=4% Similarity=0.108 Sum_probs=19.8
Q ss_pred cEEEEEEcCCCccHHHHHHHHhc
Q 035574 15 LSVVAILDSIGLDKTAFTAEAYN 37 (156)
Q Consensus 15 ~~vi~I~G~gGvGKTtLa~~vy~ 37 (156)
.--|.++|.+|+|||||.+.+.+
T Consensus 20 ~~ki~~vG~~~vGKTsLi~~l~~ 42 (196)
T 3llu_A 20 KPRILLMGLRRSGKSSIQKVVFH 42 (196)
T ss_dssp CCEEEEEESTTSSHHHHHHHHHS
T ss_pred ceEEEEECCCCCCHHHHHHHHHh
Confidence 45678999999999999997766
No 315
>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*
Probab=94.21 E-value=0.031 Score=44.89 Aligned_cols=50 Identities=12% Similarity=-0.004 Sum_probs=32.2
Q ss_pred EEEEEEcCCCccHHHHHHHHhccccccccCceEEEEEc--CCC-----CCHHHHHHHHHHHh
Q 035574 16 SVVAILDSIGLDKTAFTAEAYNSSYMKHYFDYLAWIPA--PYH-----YDPDQILDIVAVIL 70 (156)
Q Consensus 16 ~vi~I~G~gGvGKTtLa~~vy~~~~v~~~F~~~~wv~v--s~~-----~~~~~l~~~il~~l 70 (156)
+++-|+|.+|+|||+||.++... . . ....|++. .+. .+.+.+++.+.+.+
T Consensus 124 sviLI~GpPGsGKTtLAlqlA~~---~-G-~~VlyIs~~~eE~v~~~~~~le~~l~~i~~~l 180 (331)
T 2vhj_A 124 GMVIVTGKGNSGKTPLVHALGEA---L-G-GKDKYATVRFGEPLSGYNTDFNVFVDDIARAM 180 (331)
T ss_dssp EEEEEECSCSSSHHHHHHHHHHH---H-H-TTSCCEEEEBSCSSTTCBCCHHHHHHHHHHHH
T ss_pred cEEEEEcCCCCCHHHHHHHHHHh---C-C-CCEEEEEecchhhhhhhhcCHHHHHHHHHHHH
Confidence 56679999999999999999773 1 1 12345554 221 35666666555554
No 316
>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum}
Probab=94.21 E-value=0.041 Score=40.65 Aligned_cols=26 Identities=8% Similarity=0.156 Sum_probs=22.3
Q ss_pred CCcEEEEEEcCCCccHHHHHHHHhcc
Q 035574 13 TQLSVVAILDSIGLDKTAFTAEAYNS 38 (156)
Q Consensus 13 ~~~~vi~I~G~gGvGKTtLa~~vy~~ 38 (156)
.....|.++|.+|+|||||...+.+.
T Consensus 27 ~~~~kI~vvG~~~vGKSsLin~l~~~ 52 (228)
T 2qu8_A 27 PHKKTIILSGAPNVGKSSFMNIVSRA 52 (228)
T ss_dssp TTSEEEEEECSTTSSHHHHHHHHTTT
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 34567899999999999999998775
No 317
>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8
Probab=94.21 E-value=0.031 Score=40.16 Aligned_cols=25 Identities=20% Similarity=0.263 Sum_probs=21.0
Q ss_pred cEEEEEEcCCCccHHHHHHHHhccc
Q 035574 15 LSVVAILDSIGLDKTAFTAEAYNSS 39 (156)
Q Consensus 15 ~~vi~I~G~gGvGKTtLa~~vy~~~ 39 (156)
.--|.|+|.+|+|||||...+.+..
T Consensus 8 ~~ki~v~G~~~~GKSsli~~l~~~~ 32 (203)
T 1zbd_A 8 MFKILIIGNSSVGKTSFLFRYADDS 32 (203)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHTCC
T ss_pred eeEEEEECCCCCCHHHHHHHHhcCC
Confidence 4567899999999999999987643
No 318
>1q57_A DNA primase/helicase; dntpase, DNA replication, transferase; HET: DNA; 3.45A {Enterobacteria phage T7} SCOP: c.37.1.11 e.13.1.2
Probab=94.19 E-value=0.16 Score=42.37 Aligned_cols=58 Identities=7% Similarity=-0.032 Sum_probs=38.2
Q ss_pred cCCCCcEEEEEEcCCCccHHHHHHHHhccccccccCceEEEEEcCCCCCHHHHHHHHHHHh
Q 035574 10 EGPTQLSVVAILDSIGLDKTAFTAEAYNSSYMKHYFDYLAWIPAPYHYDPDQILDIVAVIL 70 (156)
Q Consensus 10 ~~~~~~~vi~I~G~gGvGKTtLa~~vy~~~~v~~~F~~~~wv~vs~~~~~~~l~~~il~~l 70 (156)
.+-..-.++-|.|.+|+||||||.++..+...... ...+|++. +.+..++...++...
T Consensus 237 gGl~~G~l~li~G~pG~GKT~lal~~a~~~a~~~g-~~vl~~s~--E~s~~~l~~r~~~~~ 294 (503)
T 1q57_A 237 LGARGGEVIMVTSGSGMVMSTFVRQQALQWGTAMG-KKVGLAML--EESVEETAEDLIGLH 294 (503)
T ss_dssp CCCCTTCEEEEEESSCHHHHHHHHHHHHHHTTTSC-CCEEEEES--SSCHHHHHHHHHHHH
T ss_pred cccCCCeEEEEeecCCCCchHHHHHHHHHHHHhcC-CcEEEEec--cCCHHHHHHHHHHHH
Confidence 33344568889999999999999998773322211 24677665 345677777765543
No 319
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=94.18 E-value=0.018 Score=41.68 Aligned_cols=25 Identities=16% Similarity=-0.029 Sum_probs=21.3
Q ss_pred CcEEEEEEcCCCccHHHHHHHHhcc
Q 035574 14 QLSVVAILDSIGLDKTAFTAEAYNS 38 (156)
Q Consensus 14 ~~~vi~I~G~gGvGKTtLa~~vy~~ 38 (156)
....+.|+|..|+|||||.+.+...
T Consensus 25 ~~~~v~lvG~~g~GKSTLl~~l~g~ 49 (210)
T 1pui_A 25 TGIEVAFAGRSNAGKSSALNTLTNQ 49 (210)
T ss_dssp CSEEEEEEECTTSSHHHHHTTTCCC
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCC
Confidence 3467999999999999999988764
No 320
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=94.18 E-value=0.029 Score=43.41 Aligned_cols=22 Identities=27% Similarity=0.237 Sum_probs=20.2
Q ss_pred EEEEEEcCCCccHHHHHHHHhc
Q 035574 16 SVVAILDSIGLDKTAFTAEAYN 37 (156)
Q Consensus 16 ~vi~I~G~gGvGKTtLa~~vy~ 37 (156)
.+++|+|..|.|||||.+.+..
T Consensus 31 e~~~i~G~NGsGKSTLlk~l~G 52 (263)
T 2pjz_A 31 EKVIILGPNGSGKTTLLRAISG 52 (263)
T ss_dssp SEEEEECCTTSSHHHHHHHHTT
T ss_pred EEEEEECCCCCCHHHHHHHHhC
Confidence 4789999999999999999976
No 321
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=94.18 E-value=0.035 Score=44.51 Aligned_cols=25 Identities=16% Similarity=0.056 Sum_probs=22.0
Q ss_pred CCcEEEEEEcCCCccHHHHHHHHhc
Q 035574 13 TQLSVVAILDSIGLDKTAFTAEAYN 37 (156)
Q Consensus 13 ~~~~vi~I~G~gGvGKTtLa~~vy~ 37 (156)
....+++|+|.+|+|||||...+..
T Consensus 72 ~~~~~v~lvG~pgaGKSTLln~L~~ 96 (349)
T 2www_A 72 PLAFRVGLSGPPGAGKSTFIEYFGK 96 (349)
T ss_dssp CSCEEEEEECCTTSSHHHHHHHHHH
T ss_pred cCceEEEEEcCCCCCHHHHHHHHHH
Confidence 3467999999999999999998875
No 322
>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8
Probab=94.17 E-value=0.03 Score=40.11 Aligned_cols=25 Identities=16% Similarity=0.240 Sum_probs=20.9
Q ss_pred cEEEEEEcCCCccHHHHHHHHhccc
Q 035574 15 LSVVAILDSIGLDKTAFTAEAYNSS 39 (156)
Q Consensus 15 ~~vi~I~G~gGvGKTtLa~~vy~~~ 39 (156)
.--|.|+|..|+|||||...+.++.
T Consensus 23 ~~ki~vvG~~~~GKSsli~~l~~~~ 47 (192)
T 2fg5_A 23 ELKVCLLGDTGVGKSSIVCRFVQDH 47 (192)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHHCC
T ss_pred ceEEEEECcCCCCHHHHHHHHhcCC
Confidence 3467899999999999999987643
No 323
>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=94.16 E-value=0.037 Score=38.84 Aligned_cols=26 Identities=19% Similarity=0.049 Sum_probs=21.7
Q ss_pred CCcEEEEEEcCCCccHHHHHHHHhcc
Q 035574 13 TQLSVVAILDSIGLDKTAFTAEAYNS 38 (156)
Q Consensus 13 ~~~~vi~I~G~gGvGKTtLa~~vy~~ 38 (156)
....-|.++|..|+|||||...+..+
T Consensus 16 ~~~~~i~v~G~~~~GKssli~~l~~~ 41 (183)
T 1moz_A 16 NKELRILILGLDGAGKTTILYRLQIG 41 (183)
T ss_dssp SSCEEEEEEEETTSSHHHHHHHTCCS
T ss_pred CCccEEEEECCCCCCHHHHHHHHhcC
Confidence 34567889999999999999998753
No 324
>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=94.16 E-value=0.036 Score=39.75 Aligned_cols=24 Identities=21% Similarity=0.282 Sum_probs=20.5
Q ss_pred cEEEEEEcCCCccHHHHHHHHhcc
Q 035574 15 LSVVAILDSIGLDKTAFTAEAYNS 38 (156)
Q Consensus 15 ~~vi~I~G~gGvGKTtLa~~vy~~ 38 (156)
.--|.++|.+|+|||||...+.++
T Consensus 28 ~~ki~v~G~~~vGKSsli~~l~~~ 51 (196)
T 2atv_A 28 EVKLAIFGRAGVGKSALVVRFLTK 51 (196)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHS
T ss_pred ceEEEEECCCCCCHHHHHHHHHhC
Confidence 345789999999999999998764
No 325
>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*
Probab=94.15 E-value=0.039 Score=39.63 Aligned_cols=26 Identities=31% Similarity=0.346 Sum_probs=21.5
Q ss_pred CcEEEEEEcCCCccHHHHHHHHhccc
Q 035574 14 QLSVVAILDSIGLDKTAFTAEAYNSS 39 (156)
Q Consensus 14 ~~~vi~I~G~gGvGKTtLa~~vy~~~ 39 (156)
...-|.|+|.+|+|||||...+..+.
T Consensus 7 ~~~ki~v~G~~~~GKSsli~~l~~~~ 32 (207)
T 1vg8_A 7 VLLKVIILGDSGVGKTSLMNQYVNKK 32 (207)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHHSC
T ss_pred cceEEEEECcCCCCHHHHHHHHHcCC
Confidence 34568999999999999999987643
No 326
>2h92_A Cytidylate kinase; rossmann fold, transferase; HET: C5P PG4; 2.30A {Staphylococcus aureus}
Probab=94.14 E-value=0.025 Score=41.55 Aligned_cols=22 Identities=9% Similarity=0.080 Sum_probs=19.2
Q ss_pred EEEEEEcCCCccHHHHHHHHhc
Q 035574 16 SVVAILDSIGLDKTAFTAEAYN 37 (156)
Q Consensus 16 ~vi~I~G~gGvGKTtLa~~vy~ 37 (156)
.+|.|.|+.|.||||+++.+..
T Consensus 4 ~~i~i~G~~gsGkst~~~~l~~ 25 (219)
T 2h92_A 4 INIALDGPAAAGKSTIAKRVAS 25 (219)
T ss_dssp CCEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4689999999999999988754
No 327
>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*
Probab=94.13 E-value=0.031 Score=39.50 Aligned_cols=26 Identities=12% Similarity=-0.005 Sum_probs=22.0
Q ss_pred CcEEEEEEcCCCccHHHHHHHHhccc
Q 035574 14 QLSVVAILDSIGLDKTAFTAEAYNSS 39 (156)
Q Consensus 14 ~~~vi~I~G~gGvGKTtLa~~vy~~~ 39 (156)
...-|.++|.+|+|||||...+.++.
T Consensus 17 ~~~~i~v~G~~~~GKssl~~~l~~~~ 42 (186)
T 1ksh_A 17 RELRLLMLGLDNAGKTTILKKFNGED 42 (186)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHTTCC
T ss_pred CeeEEEEECCCCCCHHHHHHHHhcCC
Confidence 45678999999999999999987654
No 328
>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*
Probab=94.13 E-value=0.041 Score=39.24 Aligned_cols=24 Identities=13% Similarity=0.008 Sum_probs=20.3
Q ss_pred cEEEEEEcCCCccHHHHHHHHhcc
Q 035574 15 LSVVAILDSIGLDKTAFTAEAYNS 38 (156)
Q Consensus 15 ~~vi~I~G~gGvGKTtLa~~vy~~ 38 (156)
.--|.|+|..|+|||||...+.+.
T Consensus 22 ~~ki~v~G~~~~GKSsli~~l~~~ 45 (188)
T 1zd9_A 22 EMELTLVGLQYSGKTTFVNVIASG 45 (188)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHS
T ss_pred ccEEEEECCCCCCHHHHHHHHHcC
Confidence 345789999999999999998764
No 329
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1
Probab=94.13 E-value=0.032 Score=44.72 Aligned_cols=23 Identities=22% Similarity=0.189 Sum_probs=20.5
Q ss_pred cEEEEEEcCCCccHHHHHHHHhc
Q 035574 15 LSVVAILDSIGLDKTAFTAEAYN 37 (156)
Q Consensus 15 ~~vi~I~G~gGvGKTtLa~~vy~ 37 (156)
...++|+|..|.|||||++.+..
T Consensus 170 g~k~~IvG~nGsGKSTLlk~L~g 192 (365)
T 1lw7_A 170 AKTVAILGGESSGKSVLVNKLAA 192 (365)
T ss_dssp CEEEEEECCTTSHHHHHHHHHHH
T ss_pred hCeEEEECCCCCCHHHHHHHHHH
Confidence 46889999999999999998865
No 330
>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}
Probab=94.12 E-value=0.036 Score=39.93 Aligned_cols=25 Identities=20% Similarity=0.185 Sum_probs=21.2
Q ss_pred cEEEEEEcCCCccHHHHHHHHhccc
Q 035574 15 LSVVAILDSIGLDKTAFTAEAYNSS 39 (156)
Q Consensus 15 ~~vi~I~G~gGvGKTtLa~~vy~~~ 39 (156)
..-|.|+|.+|+|||||...+.+..
T Consensus 24 ~~ki~vvG~~~~GKSsli~~l~~~~ 48 (201)
T 3oes_A 24 YRKVVILGYRCVGKTSLAHQFVEGE 48 (201)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHSC
T ss_pred cEEEEEECCCCcCHHHHHHHHHhCC
Confidence 4567899999999999999987643
No 331
>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}
Probab=94.12 E-value=0.024 Score=41.06 Aligned_cols=23 Identities=13% Similarity=0.199 Sum_probs=19.9
Q ss_pred CcEEEEEEcCCCccHHHHHHHHh
Q 035574 14 QLSVVAILDSIGLDKTAFTAEAY 36 (156)
Q Consensus 14 ~~~vi~I~G~gGvGKTtLa~~vy 36 (156)
..-.|.++|.+|+|||||...+.
T Consensus 22 ~~~ki~vvG~~~vGKSsLi~~l~ 44 (195)
T 3cbq_A 22 GIFKVMLVGESGVGKSTLAGTFG 44 (195)
T ss_dssp CEEEEEEECSTTSSHHHHHHHTC
T ss_pred cEEEEEEECCCCCCHHHHHHHHH
Confidence 34578999999999999999984
No 332
>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens}
Probab=94.12 E-value=0.032 Score=40.05 Aligned_cols=24 Identities=8% Similarity=0.037 Sum_probs=20.0
Q ss_pred cEEEEEEcCCCccHHHHHHHHhcc
Q 035574 15 LSVVAILDSIGLDKTAFTAEAYNS 38 (156)
Q Consensus 15 ~~vi~I~G~gGvGKTtLa~~vy~~ 38 (156)
.--|.++|..|+|||||...+.++
T Consensus 20 ~~ki~~~G~~~~GKssl~~~l~~~ 43 (201)
T 2q3h_A 20 GVKCVLVGDGAVGKTSLVVSYTTN 43 (201)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHC-
T ss_pred ceEEEEECCCCCCHHHHHHHHHhC
Confidence 456789999999999999988764
No 333
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=94.11 E-value=0.032 Score=41.52 Aligned_cols=21 Identities=14% Similarity=0.185 Sum_probs=18.9
Q ss_pred EEEEEcCCCccHHHHHHHHhc
Q 035574 17 VVAILDSIGLDKTAFTAEAYN 37 (156)
Q Consensus 17 vi~I~G~gGvGKTtLa~~vy~ 37 (156)
+|-+.|.+|+||+|.|+.+..
T Consensus 2 ~Iil~GpPGsGKgTqa~~La~ 22 (206)
T 3sr0_A 2 ILVFLGPPGAGKGTQAKRLAK 22 (206)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 467899999999999999877
No 334
>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8
Probab=94.07 E-value=0.033 Score=39.46 Aligned_cols=23 Identities=13% Similarity=0.235 Sum_probs=20.0
Q ss_pred EEEEEEcCCCccHHHHHHHHhcc
Q 035574 16 SVVAILDSIGLDKTAFTAEAYNS 38 (156)
Q Consensus 16 ~vi~I~G~gGvGKTtLa~~vy~~ 38 (156)
--|.++|..|+|||||...+.++
T Consensus 16 ~~i~v~G~~~~GKssli~~l~~~ 38 (195)
T 1x3s_A 16 LKILIIGESGVGKSSLLLRFTDD 38 (195)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHcC
Confidence 46788999999999999998764
No 335
>3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4}
Probab=94.06 E-value=0.13 Score=41.36 Aligned_cols=42 Identities=10% Similarity=0.138 Sum_probs=30.4
Q ss_pred EEEEEcCCCccHHHHHHHHhccccccccC--ceEEEEEcCCCCCHH
Q 035574 17 VVAILDSIGLDKTAFTAEAYNSSYMKHYF--DYLAWIPAPYHYDPD 60 (156)
Q Consensus 17 vi~I~G~gGvGKTtLa~~vy~~~~v~~~F--~~~~wv~vs~~~~~~ 60 (156)
++-|.|.+|+|||||+.++... ....+ ...+|+...+.++..
T Consensus 30 iteI~G~pGsGKTtL~Lq~~~~--~~~~g~g~~vlyId~E~s~~~~ 73 (333)
T 3io5_A 30 LLILAGPSKSFKSNFGLTMVSS--YMRQYPDAVCLFYDSEFGITPA 73 (333)
T ss_dssp EEEEEESSSSSHHHHHHHHHHH--HHHHCTTCEEEEEESSCCCCHH
T ss_pred eEEEECCCCCCHHHHHHHHHHH--HHhcCCCceEEEEeccchhhHH
Confidence 6889999999999998887663 22221 347888877776653
No 336
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=94.05 E-value=0.026 Score=44.70 Aligned_cols=23 Identities=13% Similarity=0.213 Sum_probs=20.4
Q ss_pred cEEEEEEcCCCccHHHHHHHHhc
Q 035574 15 LSVVAILDSIGLDKTAFTAEAYN 37 (156)
Q Consensus 15 ~~vi~I~G~gGvGKTtLa~~vy~ 37 (156)
-.+++|+|..|.|||||++.+..
T Consensus 80 Ge~vaivG~sGsGKSTLl~ll~g 102 (306)
T 3nh6_A 80 GQTLALVGPSGAGKSTILRLLFR 102 (306)
T ss_dssp TCEEEEESSSCHHHHHHHHHHTT
T ss_pred CCEEEEECCCCchHHHHHHHHHc
Confidence 35789999999999999999865
No 337
>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*
Probab=94.04 E-value=0.043 Score=39.16 Aligned_cols=24 Identities=8% Similarity=0.081 Sum_probs=20.6
Q ss_pred EEEEEEcCCCccHHHHHHHHhccc
Q 035574 16 SVVAILDSIGLDKTAFTAEAYNSS 39 (156)
Q Consensus 16 ~vi~I~G~gGvGKTtLa~~vy~~~ 39 (156)
--|.++|..|+|||||...+.+..
T Consensus 24 ~ki~~vG~~~~GKSsl~~~l~~~~ 47 (194)
T 3reg_A 24 LKIVVVGDGAVGKTCLLLAFSKGE 47 (194)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSC
T ss_pred eEEEEECcCCCCHHHHHHHHhcCC
Confidence 457899999999999999987753
No 338
>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8
Probab=94.03 E-value=0.038 Score=40.36 Aligned_cols=24 Identities=13% Similarity=0.054 Sum_probs=20.7
Q ss_pred cEEEEEEcCCCccHHHHHHHHhcc
Q 035574 15 LSVVAILDSIGLDKTAFTAEAYNS 38 (156)
Q Consensus 15 ~~vi~I~G~gGvGKTtLa~~vy~~ 38 (156)
.--|.++|.+|+|||||...+.++
T Consensus 28 ~~ki~vvG~~~vGKSsLi~~l~~~ 51 (205)
T 1gwn_A 28 KCKIVVVGDSQCGKTALLHVFAKD 51 (205)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHS
T ss_pred eeEEEEECCCCCCHHHHHHHHhcC
Confidence 346789999999999999998764
No 339
>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}
Probab=94.03 E-value=0.025 Score=44.37 Aligned_cols=23 Identities=17% Similarity=0.118 Sum_probs=19.9
Q ss_pred EEEEEEcCCCccHHHHHHHHhcc
Q 035574 16 SVVAILDSIGLDKTAFTAEAYNS 38 (156)
Q Consensus 16 ~vi~I~G~gGvGKTtLa~~vy~~ 38 (156)
..+-|+|.+|+|||++|+.+++.
T Consensus 26 ~~vLi~Ge~GtGKt~lAr~i~~~ 48 (304)
T 1ojl_A 26 ATVLIHGDSGTGKELVARALHAC 48 (304)
T ss_dssp SCEEEESCTTSCHHHHHHHHHHH
T ss_pred CcEEEECCCCchHHHHHHHHHHh
Confidence 34669999999999999999873
No 340
>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*
Probab=94.02 E-value=0.034 Score=39.55 Aligned_cols=25 Identities=16% Similarity=0.230 Sum_probs=21.2
Q ss_pred cEEEEEEcCCCccHHHHHHHHhccc
Q 035574 15 LSVVAILDSIGLDKTAFTAEAYNSS 39 (156)
Q Consensus 15 ~~vi~I~G~gGvGKTtLa~~vy~~~ 39 (156)
.--|.|+|..|+|||||...+.++.
T Consensus 22 ~~ki~vvG~~~~GKSsli~~l~~~~ 46 (189)
T 2gf9_A 22 MFKLLLIGNSSVGKTSFLFRYADDS 46 (189)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSC
T ss_pred eeEEEEECCCCCCHHHHHHHHHcCC
Confidence 4568899999999999999987643
No 341
>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=94.01 E-value=0.043 Score=39.04 Aligned_cols=24 Identities=13% Similarity=0.151 Sum_probs=20.4
Q ss_pred cEEEEEEcCCCccHHHHHHHHhcc
Q 035574 15 LSVVAILDSIGLDKTAFTAEAYNS 38 (156)
Q Consensus 15 ~~vi~I~G~gGvGKTtLa~~vy~~ 38 (156)
.--|.++|.+|+|||||...+..+
T Consensus 8 ~~ki~vvG~~~~GKSsli~~l~~~ 31 (199)
T 2gf0_A 8 DYRVVVFGAGGVGKSSLVLRFVKG 31 (199)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHHS
T ss_pred eeEEEEECCCCCcHHHHHHHHHcC
Confidence 346799999999999999998763
No 342
>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*
Probab=94.01 E-value=0.034 Score=39.56 Aligned_cols=24 Identities=13% Similarity=0.194 Sum_probs=20.5
Q ss_pred cEEEEEEcCCCccHHHHHHHHhcc
Q 035574 15 LSVVAILDSIGLDKTAFTAEAYNS 38 (156)
Q Consensus 15 ~~vi~I~G~gGvGKTtLa~~vy~~ 38 (156)
..-|.++|..|+|||||...+..+
T Consensus 20 ~~ki~v~G~~~~GKSsli~~l~~~ 43 (189)
T 1z06_A 20 IFKIIVIGDSNVGKTCLTYRFCAG 43 (189)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHHS
T ss_pred eEEEEEECCCCCCHHHHHHHHHcC
Confidence 456889999999999999998754
No 343
>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*
Probab=93.97 E-value=0.035 Score=39.62 Aligned_cols=24 Identities=17% Similarity=0.243 Sum_probs=20.2
Q ss_pred cEEEEEEcCCCccHHHHHHHHhcc
Q 035574 15 LSVVAILDSIGLDKTAFTAEAYNS 38 (156)
Q Consensus 15 ~~vi~I~G~gGvGKTtLa~~vy~~ 38 (156)
.--|.|+|..|+|||||...+.+.
T Consensus 21 ~~ki~v~G~~~~GKSsli~~l~~~ 44 (191)
T 2a5j_A 21 LFKYIIIGDTGVGKSCLLLQFTDK 44 (191)
T ss_dssp EEEEEEESSTTSSHHHHHHHHHHS
T ss_pred ceEEEEECcCCCCHHHHHHHHhcC
Confidence 345788999999999999998764
No 344
>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=93.95 E-value=0.038 Score=39.26 Aligned_cols=25 Identities=20% Similarity=0.001 Sum_probs=21.3
Q ss_pred CcEEEEEEcCCCccHHHHHHHHhcc
Q 035574 14 QLSVVAILDSIGLDKTAFTAEAYNS 38 (156)
Q Consensus 14 ~~~vi~I~G~gGvGKTtLa~~vy~~ 38 (156)
..--|.++|..|+|||||...+.+.
T Consensus 15 ~~~~i~v~G~~~~GKssl~~~l~~~ 39 (187)
T 1zj6_A 15 QEHKVIIVGLDNAGKTTILYQFSMN 39 (187)
T ss_dssp SCEEEEEEESTTSSHHHHHHHHHTT
T ss_pred CccEEEEECCCCCCHHHHHHHHhcC
Confidence 3466899999999999999998753
No 345
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=93.94 E-value=0.047 Score=41.17 Aligned_cols=23 Identities=9% Similarity=0.078 Sum_probs=19.4
Q ss_pred cEEEEEEcCCCccHHHHHHHHhc
Q 035574 15 LSVVAILDSIGLDKTAFTAEAYN 37 (156)
Q Consensus 15 ~~vi~I~G~gGvGKTtLa~~vy~ 37 (156)
.+-+-++|.+|.||||+|..+.+
T Consensus 58 kn~ili~GPPGtGKTt~a~ala~ 80 (212)
T 1tue_A 58 KNCLVFCGPANTGKSYFGMSFIH 80 (212)
T ss_dssp CSEEEEESCGGGCHHHHHHHHHH
T ss_pred ccEEEEECCCCCCHHHHHHHHHH
Confidence 45689999999999998877765
No 346
>3fkq_A NTRC-like two-domain protein; RER070207001320, structural GE joint center for structural genomics, JCSG, protein structu initiative, PSI-2; HET: ATP 2PE; 2.10A {Eubacterium rectale}
Probab=93.93 E-value=0.048 Score=43.88 Aligned_cols=26 Identities=19% Similarity=0.153 Sum_probs=21.5
Q ss_pred CCCcEEEEEEc-CCCccHHHHHHHHhc
Q 035574 12 PTQLSVVAILD-SIGLDKTAFTAEAYN 37 (156)
Q Consensus 12 ~~~~~vi~I~G-~gGvGKTtLa~~vy~ 37 (156)
....++|+|++ -||+||||+|..+..
T Consensus 140 ~~~~kvIav~s~KGGvGKTT~a~nLA~ 166 (373)
T 3fkq_A 140 NDKSSVVIFTSPCGGVGTSTVAAACAI 166 (373)
T ss_dssp TTSCEEEEEECSSTTSSHHHHHHHHHH
T ss_pred CCCceEEEEECCCCCChHHHHHHHHHH
Confidence 35679999995 899999999887765
No 347
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=93.93 E-value=0.034 Score=43.64 Aligned_cols=23 Identities=22% Similarity=0.221 Sum_probs=20.9
Q ss_pred cEEEEEEcCCCccHHHHHHHHhc
Q 035574 15 LSVVAILDSIGLDKTAFTAEAYN 37 (156)
Q Consensus 15 ~~vi~I~G~gGvGKTtLa~~vy~ 37 (156)
-.+++|+|..|.|||||.+.+..
T Consensus 64 Ge~~~i~G~NGsGKSTLlk~l~G 86 (290)
T 2bbs_A 64 GQLLAVAGSTGAGKTSLLMMIMG 86 (290)
T ss_dssp TCEEEEEESTTSSHHHHHHHHTT
T ss_pred CCEEEEECCCCCcHHHHHHHHhc
Confidence 35889999999999999999977
No 348
>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}
Probab=93.91 E-value=0.036 Score=39.89 Aligned_cols=25 Identities=8% Similarity=0.200 Sum_probs=20.8
Q ss_pred CcEEEEEEcCCCccHHHHHHHHhcc
Q 035574 14 QLSVVAILDSIGLDKTAFTAEAYNS 38 (156)
Q Consensus 14 ~~~vi~I~G~gGvGKTtLa~~vy~~ 38 (156)
...-|.|+|..|+|||||...+..+
T Consensus 27 ~~~ki~v~G~~~~GKSsli~~l~~~ 51 (199)
T 2p5s_A 27 KAYKIVLAGDAAVGKSSFLMRLCKN 51 (199)
T ss_dssp -CEEEEEESSTTSSHHHHHHHHHHC
T ss_pred CCeEEEEECcCCCCHHHHHHHHHhC
Confidence 3467899999999999999998754
No 349
>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens}
Probab=93.91 E-value=0.036 Score=40.03 Aligned_cols=24 Identities=17% Similarity=0.235 Sum_probs=20.0
Q ss_pred cEEEEEEcCCCccHHHHHHHHhcc
Q 035574 15 LSVVAILDSIGLDKTAFTAEAYNS 38 (156)
Q Consensus 15 ~~vi~I~G~gGvGKTtLa~~vy~~ 38 (156)
.--|.|+|..|+|||||...+.++
T Consensus 25 ~~ki~v~G~~~~GKSsLi~~l~~~ 48 (200)
T 2o52_A 25 LFKFLVIGSAGTGKSCLLHQFIEN 48 (200)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHC-
T ss_pred ceEEEEECcCCCCHHHHHHHHHhC
Confidence 456789999999999999988754
No 350
>2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major}
Probab=93.90 E-value=0.05 Score=38.60 Aligned_cols=26 Identities=15% Similarity=-0.042 Sum_probs=21.3
Q ss_pred CCcEEEEEEcCCCccHHHHHHHHhcc
Q 035574 13 TQLSVVAILDSIGLDKTAFTAEAYNS 38 (156)
Q Consensus 13 ~~~~vi~I~G~gGvGKTtLa~~vy~~ 38 (156)
...--|.++|..|+|||||...+..+
T Consensus 20 ~~~~~i~v~G~~~~GKssli~~l~~~ 45 (189)
T 2x77_A 20 DRKIRVLMLGLDNAGKTSILYRLHLG 45 (189)
T ss_dssp TSCEEEEEEEETTSSHHHHHHHTCCS
T ss_pred CCceEEEEECCCCCCHHHHHHHHHcC
Confidence 34456899999999999999998653
No 351
>3kjh_A CO dehydrogenase/acetyl-COA synthase complex, accessory protein COOC; Zn-bound dimer, nickel binding protein, ATPase; 1.90A {Carboxydothermus hydrogenoformans} PDB: 3kjg_A* 3kje_A 3kji_A*
Probab=93.90 E-value=0.033 Score=41.28 Aligned_cols=20 Identities=25% Similarity=0.298 Sum_probs=17.0
Q ss_pred EEEEcCCCccHHHHHHHHhc
Q 035574 18 VAILDSIGLDKTAFTAEAYN 37 (156)
Q Consensus 18 i~I~G~gGvGKTtLa~~vy~ 37 (156)
|.|.|-||+||||+|..+..
T Consensus 3 I~vs~kGGvGKTt~a~~LA~ 22 (254)
T 3kjh_A 3 LAVAGKGGVGKTTVAAGLIK 22 (254)
T ss_dssp EEEECSSSHHHHHHHHHHHH
T ss_pred EEEecCCCCCHHHHHHHHHH
Confidence 66789999999999887755
No 352
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=93.89 E-value=0.11 Score=42.98 Aligned_cols=52 Identities=13% Similarity=0.156 Sum_probs=34.7
Q ss_pred CCcEEEEEEcCCCccHHHHHHHHhccccccccCceEEEEEcCCCCCHHHHHHHHH
Q 035574 13 TQLSVVAILDSIGLDKTAFTAEAYNSSYMKHYFDYLAWIPAPYHYDPDQILDIVA 67 (156)
Q Consensus 13 ~~~~vi~I~G~gGvGKTtLa~~vy~~~~v~~~F~~~~wv~vs~~~~~~~l~~~il 67 (156)
..-.++.|.|.+|+|||||+.++..+...... ..++|++.. .+..++...++
T Consensus 201 ~~G~liiI~G~pG~GKTtl~l~ia~~~~~~~g-~~Vl~~s~E--~s~~~l~~r~~ 252 (454)
T 2r6a_A 201 QRSDLIIVAARPSVGKTAFALNIAQNVATKTN-ENVAIFSLE--MSAQQLVMRML 252 (454)
T ss_dssp CTTCEEEEECCTTSCHHHHHHHHHHHHHHHSS-CCEEEEESS--SCHHHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHHHHhCC-CcEEEEECC--CCHHHHHHHHH
Confidence 34568999999999999999998774322111 246666543 34566666654
No 353
>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}
Probab=93.88 E-value=0.033 Score=39.94 Aligned_cols=24 Identities=25% Similarity=0.318 Sum_probs=19.5
Q ss_pred EEEEEEcCCCccHHHHHHHHhccc
Q 035574 16 SVVAILDSIGLDKTAFTAEAYNSS 39 (156)
Q Consensus 16 ~vi~I~G~gGvGKTtLa~~vy~~~ 39 (156)
--|.|+|..|+|||||...+.++.
T Consensus 27 ~ki~vvG~~~~GKSsLi~~l~~~~ 50 (192)
T 2il1_A 27 LQVIIIGSRGVGKTSLMERFTDDT 50 (192)
T ss_dssp EEEEEECSTTSSHHHHHHHHCC--
T ss_pred eEEEEECCCCCCHHHHHHHHhcCC
Confidence 457899999999999999987643
No 354
>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*
Probab=93.87 E-value=0.034 Score=39.95 Aligned_cols=24 Identities=8% Similarity=-0.082 Sum_probs=20.6
Q ss_pred cEEEEEEcCCCccHHHHHHHHhcc
Q 035574 15 LSVVAILDSIGLDKTAFTAEAYNS 38 (156)
Q Consensus 15 ~~vi~I~G~gGvGKTtLa~~vy~~ 38 (156)
.--|.|+|.+|+|||||...+..+
T Consensus 29 ~~ki~v~G~~~vGKSsLi~~l~~~ 52 (192)
T 2b6h_A 29 QMRILMVGLDAAGKTTILYKLKLG 52 (192)
T ss_dssp CEEEEEEESTTSSHHHHHHHHCSS
T ss_pred ccEEEEECCCCCCHHHHHHHHHhC
Confidence 456899999999999999998653
No 355
>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=93.87 E-value=0.035 Score=39.60 Aligned_cols=23 Identities=17% Similarity=0.195 Sum_probs=19.9
Q ss_pred EEEEEEcCCCccHHHHHHHHhcc
Q 035574 16 SVVAILDSIGLDKTAFTAEAYNS 38 (156)
Q Consensus 16 ~vi~I~G~gGvGKTtLa~~vy~~ 38 (156)
--|.|+|..|+|||||...+.++
T Consensus 24 ~ki~v~G~~~~GKSsli~~l~~~ 46 (191)
T 3dz8_A 24 FKLLIIGNSSVGKTSFLFRYADD 46 (191)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCCcCHHHHHHHHhcC
Confidence 45789999999999999998764
No 356
>2axn_A 6-phosphofructo-2-kinase/fructose-2,6- biphosphatase 3 (6PF-2-K/FRU- 2,6-P2ASE brain/placenta-type...; bifunctional enzyme, EDTA complex; HET: F6P EDT ADP; 2.10A {Homo sapiens} PDB: 2dwo_A* 2dwp_A* 2i1v_B* 3qpu_A* 3qpv_A* 3qpw_A*
Probab=93.86 E-value=0.041 Score=46.59 Aligned_cols=24 Identities=13% Similarity=0.115 Sum_probs=20.9
Q ss_pred CcEEEEEEcCCCccHHHHHHHHhc
Q 035574 14 QLSVVAILDSIGLDKTAFTAEAYN 37 (156)
Q Consensus 14 ~~~vi~I~G~gGvGKTtLa~~vy~ 37 (156)
...+|-++|++|.||||+|+.+..
T Consensus 34 ~~~lIvlvGlpGSGKSTia~~La~ 57 (520)
T 2axn_A 34 SPTVIVMVGLPARGKTYISKKLTR 57 (520)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 346889999999999999999865
No 357
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=93.86 E-value=0.039 Score=44.14 Aligned_cols=23 Identities=22% Similarity=0.192 Sum_probs=20.5
Q ss_pred cEEEEEEcCCCccHHHHHHHHhc
Q 035574 15 LSVVAILDSIGLDKTAFTAEAYN 37 (156)
Q Consensus 15 ~~vi~I~G~gGvGKTtLa~~vy~ 37 (156)
..+|.|.|..|+||||||..+..
T Consensus 3 ~~~i~i~GptgsGKt~la~~La~ 25 (322)
T 3exa_A 3 EKLVAIVGPTAVGKTKTSVMLAK 25 (322)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHH
T ss_pred CcEEEEECCCcCCHHHHHHHHHH
Confidence 35789999999999999999876
No 358
>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A*
Probab=93.86 E-value=0.038 Score=39.87 Aligned_cols=23 Identities=13% Similarity=0.189 Sum_probs=19.5
Q ss_pred cEEEEEEcCCCccHHHHHHHHhc
Q 035574 15 LSVVAILDSIGLDKTAFTAEAYN 37 (156)
Q Consensus 15 ~~vi~I~G~gGvGKTtLa~~vy~ 37 (156)
.--|.|+|.+|+|||||...+..
T Consensus 6 ~~kv~lvG~~~vGKSsL~~~~~~ 28 (192)
T 2cjw_A 6 YYRVVLIGEQGVGKSTLANIFAG 28 (192)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHH
T ss_pred eEEEEEECCCCCCHHHHHHHHhc
Confidence 34588999999999999988763
No 359
>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=93.83 E-value=0.048 Score=39.74 Aligned_cols=24 Identities=17% Similarity=0.306 Sum_probs=20.4
Q ss_pred cEEEEEEcCCCccHHHHHHHHhcc
Q 035574 15 LSVVAILDSIGLDKTAFTAEAYNS 38 (156)
Q Consensus 15 ~~vi~I~G~gGvGKTtLa~~vy~~ 38 (156)
..-|.|+|..|+|||||...+.+.
T Consensus 26 ~~ki~lvG~~~vGKSsLi~~l~~~ 49 (201)
T 2ew1_A 26 LFKIVLIGNAGVGKTCLVRRFTQG 49 (201)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHS
T ss_pred ceEEEEECcCCCCHHHHHHHHHhC
Confidence 456789999999999999988653
No 360
>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*
Probab=93.80 E-value=0.044 Score=39.79 Aligned_cols=24 Identities=8% Similarity=0.036 Sum_probs=20.1
Q ss_pred cEEEEEEcCCCccHHHHHHHHhcc
Q 035574 15 LSVVAILDSIGLDKTAFTAEAYNS 38 (156)
Q Consensus 15 ~~vi~I~G~gGvGKTtLa~~vy~~ 38 (156)
.--|.++|..|+|||||...+.++
T Consensus 30 ~~ki~vvG~~~~GKSsLi~~l~~~ 53 (204)
T 4gzl_A 30 AIKCVVVGDGAVGKTCLLISYTTN 53 (204)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHS
T ss_pred eEEEEEECcCCCCHHHHHHHHHhC
Confidence 345789999999999999888754
No 361
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=93.79 E-value=0.041 Score=45.79 Aligned_cols=21 Identities=19% Similarity=0.226 Sum_probs=18.6
Q ss_pred EEEEEcCCCccHHHHHHHHhc
Q 035574 17 VVAILDSIGLDKTAFTAEAYN 37 (156)
Q Consensus 17 vi~I~G~gGvGKTtLa~~vy~ 37 (156)
-+-++|.+|+|||+||+.+..
T Consensus 203 ~~LL~G~pG~GKT~la~~la~ 223 (468)
T 3pxg_A 203 NPVLIGEPGVGKTAIAEGLAQ 223 (468)
T ss_dssp EEEEESCTTTTTHHHHHHHHH
T ss_pred CeEEECCCCCCHHHHHHHHHH
Confidence 346899999999999999887
No 362
>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=93.78 E-value=0.051 Score=39.15 Aligned_cols=24 Identities=8% Similarity=0.264 Sum_probs=20.7
Q ss_pred cEEEEEEcCCCccHHHHHHHHhcc
Q 035574 15 LSVVAILDSIGLDKTAFTAEAYNS 38 (156)
Q Consensus 15 ~~vi~I~G~gGvGKTtLa~~vy~~ 38 (156)
..-|.|+|.+|+|||||...+..+
T Consensus 20 ~~~i~v~G~~~~GKSsli~~l~~~ 43 (213)
T 3cph_A 20 IMKILLIGDSGVGKSCLLVRFVED 43 (213)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHC
T ss_pred ceEEEEECCCCCCHHHHHHHHHhC
Confidence 456789999999999999998754
No 363
>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens}
Probab=93.78 E-value=0.039 Score=40.39 Aligned_cols=23 Identities=17% Similarity=0.143 Sum_probs=19.5
Q ss_pred EEEEEEcCCCccHHHHHHHHhcc
Q 035574 16 SVVAILDSIGLDKTAFTAEAYNS 38 (156)
Q Consensus 16 ~vi~I~G~gGvGKTtLa~~vy~~ 38 (156)
--|.++|.+|+|||||...+.++
T Consensus 35 ~ki~vvG~~~vGKSsli~~l~~~ 57 (214)
T 2j1l_A 35 VKVVLVGDGGCGKTSLLMVFADG 57 (214)
T ss_dssp EEEEEEECTTSSHHHHHHHHHC-
T ss_pred EEEEEECcCCCCHHHHHHHHHcC
Confidence 46789999999999999998764
No 364
>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X
Probab=93.78 E-value=0.044 Score=42.88 Aligned_cols=25 Identities=12% Similarity=0.195 Sum_probs=21.8
Q ss_pred CcEEEEEEcCCCccHHHHHHHHhcc
Q 035574 14 QLSVVAILDSIGLDKTAFTAEAYNS 38 (156)
Q Consensus 14 ~~~vi~I~G~gGvGKTtLa~~vy~~ 38 (156)
....++|+|.+|+|||||...+...
T Consensus 7 r~~~VaIvG~~nvGKSTLln~L~g~ 31 (301)
T 1ega_A 7 YCGFIAIVGRPNVGKSTLLNKLLGQ 31 (301)
T ss_dssp EEEEEEEECSSSSSHHHHHHHHHTC
T ss_pred cCCEEEEECCCCCCHHHHHHHHHCC
Confidence 3468999999999999999998764
No 365
>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*
Probab=93.77 E-value=0.039 Score=39.78 Aligned_cols=24 Identities=13% Similarity=0.238 Sum_probs=20.5
Q ss_pred cEEEEEEcCCCccHHHHHHHHhcc
Q 035574 15 LSVVAILDSIGLDKTAFTAEAYNS 38 (156)
Q Consensus 15 ~~vi~I~G~gGvGKTtLa~~vy~~ 38 (156)
..-|.|+|.+|+|||||...+.++
T Consensus 8 ~~ki~v~G~~~~GKSsli~~l~~~ 31 (206)
T 2bcg_Y 8 LFKLLLIGNSGVGKSCLLLRFSDD 31 (206)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHC
T ss_pred ceEEEEECCCCCCHHHHHHHHhcC
Confidence 456789999999999999998764
No 366
>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*
Probab=93.77 E-value=0.048 Score=42.77 Aligned_cols=27 Identities=15% Similarity=0.245 Sum_probs=23.4
Q ss_pred CCCcEEEEEEcCCCccHHHHHHHHhcc
Q 035574 12 PTQLSVVAILDSIGLDKTAFTAEAYNS 38 (156)
Q Consensus 12 ~~~~~vi~I~G~gGvGKTtLa~~vy~~ 38 (156)
+.....|+|+|.+|+|||||...+...
T Consensus 7 ~~~~g~v~ivG~~nvGKSTLin~l~g~ 33 (308)
T 3iev_A 7 HMKVGYVAIVGKPNVGKSTLLNNLLGT 33 (308)
T ss_dssp CCEEEEEEEECSTTSSHHHHHHHHHTS
T ss_pred CCCCCEEEEECCCCCcHHHHHHHHhCC
Confidence 345678999999999999999998764
No 367
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}
Probab=93.76 E-value=0.059 Score=40.21 Aligned_cols=26 Identities=12% Similarity=0.138 Sum_probs=22.1
Q ss_pred CcEEEEEEcCCCccHHHHHHHHhccc
Q 035574 14 QLSVVAILDSIGLDKTAFTAEAYNSS 39 (156)
Q Consensus 14 ~~~vi~I~G~gGvGKTtLa~~vy~~~ 39 (156)
....|.++|..|+|||||...+....
T Consensus 28 ~~~~i~lvG~~g~GKStlin~l~g~~ 53 (239)
T 3lxx_A 28 SQLRIVLVGKTGAGKSATGNSILGRK 53 (239)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHTSC
T ss_pred CceEEEEECCCCCCHHHHHHHHcCCC
Confidence 34678999999999999999988754
No 368
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=93.74 E-value=0.045 Score=45.60 Aligned_cols=24 Identities=17% Similarity=0.200 Sum_probs=21.1
Q ss_pred CcEEEEEEcCCCccHHHHHHHHhc
Q 035574 14 QLSVVAILDSIGLDKTAFTAEAYN 37 (156)
Q Consensus 14 ~~~vi~I~G~gGvGKTtLa~~vy~ 37 (156)
...+|.++|.+|+||||++..+..
T Consensus 99 ~p~vIlivG~~G~GKTTt~~kLA~ 122 (443)
T 3dm5_A 99 KPTILLMVGIQGSGKTTTVAKLAR 122 (443)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCeEEEEECcCCCCHHHHHHHHHH
Confidence 468999999999999999887765
No 369
>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*
Probab=93.72 E-value=0.037 Score=39.14 Aligned_cols=24 Identities=17% Similarity=-0.036 Sum_probs=20.6
Q ss_pred cEEEEEEcCCCccHHHHHHHHhcc
Q 035574 15 LSVVAILDSIGLDKTAFTAEAYNS 38 (156)
Q Consensus 15 ~~vi~I~G~gGvGKTtLa~~vy~~ 38 (156)
.--|.++|..|+|||||...+.+.
T Consensus 21 ~~~i~v~G~~~~GKSsli~~l~~~ 44 (181)
T 2h17_A 21 EHKVIIVGLDNAGKTTILYQFSMN 44 (181)
T ss_dssp CEEEEEEEETTSSHHHHHHHHHTT
T ss_pred eeEEEEECCCCCCHHHHHHHHhcC
Confidence 456789999999999999998764
No 370
>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*
Probab=93.72 E-value=0.032 Score=43.77 Aligned_cols=20 Identities=15% Similarity=0.380 Sum_probs=18.1
Q ss_pred EEEEcCCCccHHHHHHHHhc
Q 035574 18 VAILDSIGLDKTAFTAEAYN 37 (156)
Q Consensus 18 i~I~G~gGvGKTtLa~~vy~ 37 (156)
|.|+|..|+|||||.+.++.
T Consensus 21 I~lvG~nG~GKSTLl~~L~g 40 (301)
T 2qnr_A 21 LMVVGESGLGKSTLINSLFL 40 (301)
T ss_dssp EEEEEETTSSHHHHHHHHHC
T ss_pred EEEECCCCCCHHHHHHHHhC
Confidence 48999999999999999775
No 371
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=93.71 E-value=0.043 Score=43.78 Aligned_cols=24 Identities=17% Similarity=0.174 Sum_probs=21.2
Q ss_pred CcEEEEEEcCCCccHHHHHHHHhc
Q 035574 14 QLSVVAILDSIGLDKTAFTAEAYN 37 (156)
Q Consensus 14 ~~~vi~I~G~gGvGKTtLa~~vy~ 37 (156)
...+|.|.|..|+||||||..+..
T Consensus 9 ~~~~i~i~GptgsGKt~la~~La~ 32 (316)
T 3foz_A 9 LPKAIFLMGPTASGKTALAIELRK 32 (316)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHH
T ss_pred CCcEEEEECCCccCHHHHHHHHHH
Confidence 356889999999999999999876
No 372
>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=93.70 E-value=0.041 Score=39.93 Aligned_cols=23 Identities=9% Similarity=0.027 Sum_probs=20.1
Q ss_pred EEEEEEcCCCccHHHHHHHHhcc
Q 035574 16 SVVAILDSIGLDKTAFTAEAYNS 38 (156)
Q Consensus 16 ~vi~I~G~gGvGKTtLa~~vy~~ 38 (156)
.-|.++|..|+|||||...+..+
T Consensus 26 ~ki~vvG~~~~GKSsli~~l~~~ 48 (207)
T 2fv8_A 26 KKLVVVGDGACGKTCLLIVFSKD 48 (207)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHS
T ss_pred cEEEEECcCCCCHHHHHHHHhcC
Confidence 46789999999999999998764
No 373
>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana}
Probab=93.68 E-value=0.049 Score=39.43 Aligned_cols=24 Identities=8% Similarity=-0.015 Sum_probs=20.3
Q ss_pred cEEEEEEcCCCccHHHHHHHHhcc
Q 035574 15 LSVVAILDSIGLDKTAFTAEAYNS 38 (156)
Q Consensus 15 ~~vi~I~G~gGvGKTtLa~~vy~~ 38 (156)
.--|.++|.+|+|||||...+.++
T Consensus 9 ~~ki~i~G~~~~GKTsli~~l~~~ 32 (212)
T 2j0v_A 9 FIKCVTVGDGAVGKTCMLICYTSN 32 (212)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHS
T ss_pred eEEEEEECCCCCCHHHHHHHHhcC
Confidence 345789999999999999988754
No 374
>1u0j_A DNA replication protein; AAA+ protein, P-loop atpases, helicase; HET: DNA ADP; 2.10A {Adeno-associated virus - 2} SCOP: c.37.1.20 PDB: 1s9h_A
Probab=93.68 E-value=0.07 Score=41.55 Aligned_cols=34 Identities=9% Similarity=0.060 Sum_probs=25.6
Q ss_pred HHHHHhcCCCCcEEEEEEcCCCccHHHHHHHHhc
Q 035574 4 LLDLLIEGPTQLSVVAILDSIGLDKTAFTAEAYN 37 (156)
Q Consensus 4 l~~~L~~~~~~~~vi~I~G~gGvGKTtLa~~vy~ 37 (156)
+..||........-+-++|.+|.|||.+|..+.+
T Consensus 93 l~~~l~~~~~~~n~~~l~GppgtGKt~~a~ala~ 126 (267)
T 1u0j_A 93 FLGWATKKFGKRNTIWLFGPATTGKTNIAEAIAH 126 (267)
T ss_dssp HHHHHTTCSTTCCEEEEECSTTSSHHHHHHHHHH
T ss_pred HHHHHhCCCCCCcEEEEECCCCCCHHHHHHHHHh
Confidence 3444444334456799999999999999999876
No 375
>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8
Probab=93.65 E-value=0.05 Score=38.74 Aligned_cols=23 Identities=13% Similarity=0.089 Sum_probs=20.1
Q ss_pred EEEEEEcCCCccHHHHHHHHhcc
Q 035574 16 SVVAILDSIGLDKTAFTAEAYNS 38 (156)
Q Consensus 16 ~vi~I~G~gGvGKTtLa~~vy~~ 38 (156)
--|.++|..|+|||||...+.++
T Consensus 19 ~ki~v~G~~~~GKssli~~l~~~ 41 (194)
T 2atx_A 19 LKCVVVGDGAVGKTCLLMSYAND 41 (194)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHhcC
Confidence 46788999999999999998764
No 376
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=93.65 E-value=0.042 Score=44.68 Aligned_cols=23 Identities=9% Similarity=0.117 Sum_probs=20.6
Q ss_pred cEEEEEEcCCCccHHHHHHHHhc
Q 035574 15 LSVVAILDSIGLDKTAFTAEAYN 37 (156)
Q Consensus 15 ~~vi~I~G~gGvGKTtLa~~vy~ 37 (156)
-.+++|+|..|.|||||.+.+..
T Consensus 54 Gei~~IiGpnGaGKSTLlr~i~G 76 (366)
T 3tui_C 54 GQIYGVIGASGAGKSTLIRCVNL 76 (366)
T ss_dssp TCEEEEECCTTSSHHHHHHHHHT
T ss_pred CCEEEEEcCCCchHHHHHHHHhc
Confidence 46789999999999999999866
No 377
>2gno_A DNA polymerase III, gamma subunit-related protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: DNA; 2.00A {Thermotoga maritima} SCOP: a.80.1.1 c.37.1.20
Probab=93.62 E-value=0.4 Score=37.61 Aligned_cols=54 Identities=11% Similarity=-0.092 Sum_probs=32.8
Q ss_pred cEEEEEEcCCCccHHHHHHHHhccc-ccc-ccCceEEEEEcCC-CCCHHHHHHHHHHHh
Q 035574 15 LSVVAILDSIGLDKTAFTAEAYNSS-YMK-HYFDYLAWIPAPY-HYDPDQILDIVAVIL 70 (156)
Q Consensus 15 ~~vi~I~G~gGvGKTtLa~~vy~~~-~v~-~~F~~~~wv~vs~-~~~~~~l~~~il~~l 70 (156)
....-++|..|.||||+|+.+.+.. ... .+.+ ..++..+. ....++ .+++++.+
T Consensus 18 ~~~~Lf~Gp~G~GKtt~a~~la~~~~~~~~~~~d-~~~l~~~~~~~~id~-ir~li~~~ 74 (305)
T 2gno_A 18 GISILINGEDLSYPREVSLELPEYVEKFPPKASD-VLEIDPEGENIGIDD-IRTIKDFL 74 (305)
T ss_dssp SEEEEEECSSSSHHHHHHHHHHHHHHTSCCCTTT-EEEECCSSSCBCHHH-HHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHhCchhhccCCC-EEEEcCCcCCCCHHH-HHHHHHHH
Confidence 6678889999999999999987631 111 2333 34454433 344443 34455555
No 378
>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ...
Probab=93.59 E-value=0.044 Score=39.54 Aligned_cols=23 Identities=13% Similarity=0.040 Sum_probs=20.0
Q ss_pred EEEEEEcCCCccHHHHHHHHhcc
Q 035574 16 SVVAILDSIGLDKTAFTAEAYNS 38 (156)
Q Consensus 16 ~vi~I~G~gGvGKTtLa~~vy~~ 38 (156)
.-|.++|..|+|||||...+.++
T Consensus 26 ~ki~vvG~~~~GKSsli~~l~~~ 48 (201)
T 2gco_A 26 KKLVIVGDGACGKTCLLIVFSKD 48 (201)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHhC
Confidence 45789999999999999998764
No 379
>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens}
Probab=93.59 E-value=0.034 Score=39.61 Aligned_cols=25 Identities=20% Similarity=-0.019 Sum_probs=21.1
Q ss_pred cEEEEEEcCCCccHHHHHHHHhccc
Q 035574 15 LSVVAILDSIGLDKTAFTAEAYNSS 39 (156)
Q Consensus 15 ~~vi~I~G~gGvGKTtLa~~vy~~~ 39 (156)
.--|.++|..|+|||||...+.+..
T Consensus 21 ~~ki~v~G~~~~GKSsli~~l~~~~ 45 (190)
T 2h57_A 21 EVHVLCLGLDNSGKTTIINKLKPSN 45 (190)
T ss_dssp CEEEEEEECTTSSHHHHHHHTSCGG
T ss_pred ccEEEEECCCCCCHHHHHHHHhcCC
Confidence 3467899999999999999987654
No 380
>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}
Probab=93.58 E-value=0.038 Score=47.21 Aligned_cols=23 Identities=13% Similarity=-0.013 Sum_probs=21.1
Q ss_pred cEEEEEEcCCCccHHHHHHHHhc
Q 035574 15 LSVVAILDSIGLDKTAFTAEAYN 37 (156)
Q Consensus 15 ~~vi~I~G~gGvGKTtLa~~vy~ 37 (156)
-.++.|+|+.|.|||||++.+..
T Consensus 369 G~iI~LiG~sGSGKSTLar~La~ 391 (552)
T 3cr8_A 369 GFTVFFTGLSGAGKSTLARALAA 391 (552)
T ss_dssp CEEEEEEESSCHHHHHHHHHHHH
T ss_pred ceEEEEECCCCChHHHHHHHHHH
Confidence 46899999999999999999987
No 381
>4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase, cell division, cell cycle, SEP GTP-binding; 2.20A {Burkholderia thailandensis}
Probab=93.58 E-value=0.04 Score=40.21 Aligned_cols=27 Identities=15% Similarity=0.042 Sum_probs=22.9
Q ss_pred CCcEEEEEEcCCCccHHHHHHHHhccc
Q 035574 13 TQLSVVAILDSIGLDKTAFTAEAYNSS 39 (156)
Q Consensus 13 ~~~~vi~I~G~gGvGKTtLa~~vy~~~ 39 (156)
.....|.|+|..|+|||||...+....
T Consensus 27 ~~~~~i~v~G~~~~GKSslin~l~~~~ 53 (223)
T 4dhe_A 27 TVQPEIAFAGRSNAGKSTAINVLCNQK 53 (223)
T ss_dssp CCSCEEEEEESCHHHHHHHHHHHTTCS
T ss_pred CCCCEEEEEcCCCCCHHHHHHHHhCCC
Confidence 345678999999999999999998764
No 382
>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A*
Probab=93.57 E-value=0.058 Score=39.55 Aligned_cols=24 Identities=13% Similarity=0.148 Sum_probs=20.3
Q ss_pred EEEEEEcCCCccHHHHHHHHhccc
Q 035574 16 SVVAILDSIGLDKTAFTAEAYNSS 39 (156)
Q Consensus 16 ~vi~I~G~gGvGKTtLa~~vy~~~ 39 (156)
--|.|+|.+|+|||||...+.++.
T Consensus 28 ~ki~vvG~~~vGKSsL~~~l~~~~ 51 (214)
T 3q3j_B 28 CKLVLVGDVQCGKTAMLQVLAKDC 51 (214)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEEECcCCCCHHHHHHHHhcCC
Confidence 457899999999999999987643
No 383
>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens}
Probab=93.56 E-value=0.045 Score=39.64 Aligned_cols=24 Identities=13% Similarity=0.156 Sum_probs=20.5
Q ss_pred cEEEEEEcCCCccHHHHHHHHhcc
Q 035574 15 LSVVAILDSIGLDKTAFTAEAYNS 38 (156)
Q Consensus 15 ~~vi~I~G~gGvGKTtLa~~vy~~ 38 (156)
.--|.|+|..|+|||||...+.++
T Consensus 29 ~~ki~vvG~~~vGKSsli~~l~~~ 52 (201)
T 2hup_A 29 LFKLVLVGDASVGKTCVVQRFKTG 52 (201)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHHS
T ss_pred ceEEEEECcCCCCHHHHHHHHhhC
Confidence 456789999999999999998654
No 384
>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A*
Probab=93.55 E-value=0.048 Score=39.63 Aligned_cols=24 Identities=25% Similarity=0.290 Sum_probs=20.6
Q ss_pred cEEEEEEcCCCccHHHHHHHHhcc
Q 035574 15 LSVVAILDSIGLDKTAFTAEAYNS 38 (156)
Q Consensus 15 ~~vi~I~G~gGvGKTtLa~~vy~~ 38 (156)
.--|.|+|..|+|||||...+.+.
T Consensus 25 ~~ki~vvG~~~~GKSsLi~~l~~~ 48 (217)
T 2f7s_A 25 LIKLLALGDSGVGKTTFLYRYTDN 48 (217)
T ss_dssp EEEEEEESCTTSSHHHHHHHHHCS
T ss_pred eEEEEEECcCCCCHHHHHHHHhcC
Confidence 346789999999999999998764
No 385
>3fdi_A Uncharacterized protein; cytidylate kinase like protein, PSI, MCSG, PRK04182 class ME structural genomics, protein structure initiative; 2.20A {Eubacterium ventriosum}
Probab=93.53 E-value=0.046 Score=40.32 Aligned_cols=22 Identities=14% Similarity=0.128 Sum_probs=19.9
Q ss_pred EEEEEEcCCCccHHHHHHHHhc
Q 035574 16 SVVAILDSIGLDKTAFTAEAYN 37 (156)
Q Consensus 16 ~vi~I~G~gGvGKTtLa~~vy~ 37 (156)
.+|+|.|+.|.||||+++.+..
T Consensus 7 ~iI~i~g~~GsGk~ti~~~la~ 28 (201)
T 3fdi_A 7 IIIAIGREFGSGGHLVAKKLAE 28 (201)
T ss_dssp CEEEEEECTTSSHHHHHHHHHH
T ss_pred eEEEEeCCCCCCHHHHHHHHHH
Confidence 5899999999999999998755
No 386
>3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1}
Probab=93.53 E-value=0.12 Score=42.73 Aligned_cols=56 Identities=16% Similarity=0.106 Sum_probs=36.1
Q ss_pred cCCCCcEEEEEEcCCCccHHHHHHHHhccccccccCceEEEEEcCCCCCHHHHHHHHHHH
Q 035574 10 EGPTQLSVVAILDSIGLDKTAFTAEAYNSSYMKHYFDYLAWIPAPYHYDPDQILDIVAVI 69 (156)
Q Consensus 10 ~~~~~~~vi~I~G~gGvGKTtLa~~vy~~~~v~~~F~~~~wv~vs~~~~~~~l~~~il~~ 69 (156)
.+-..-.++-|.|.+|+||||||.++..+.... . ...+|++.. .+..++...++..
T Consensus 192 gGl~~G~liiIaG~pG~GKTtlal~ia~~~a~~-g-~~vl~fSlE--ms~~ql~~R~~~~ 247 (444)
T 3bgw_A 192 YGYKRRNFVLIAARPSMGKTAFALKQAKNMSDN-D-DVVNLHSLE--MGKKENIKRLIVT 247 (444)
T ss_dssp SSBCSSCEEEEEECSSSSHHHHHHHHHHHHHHT-T-CEEEEECSS--SCTTHHHHHHHHH
T ss_pred CCCCCCcEEEEEeCCCCChHHHHHHHHHHHHHc-C-CEEEEEECC--CCHHHHHHHHHHH
Confidence 333445788999999999999999987743222 1 246666543 4455566655544
No 387
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=93.51 E-value=0.053 Score=48.24 Aligned_cols=24 Identities=17% Similarity=0.130 Sum_probs=21.2
Q ss_pred CcEEEEEEcCCCccHHHHHHHHhc
Q 035574 14 QLSVVAILDSIGLDKTAFTAEAYN 37 (156)
Q Consensus 14 ~~~vi~I~G~gGvGKTtLa~~vy~ 37 (156)
...-+-++|.+|+||||||+.+..
T Consensus 237 ~~~~vLL~Gp~GtGKTtLarala~ 260 (806)
T 1ypw_A 237 PPRGILLYGPPGTGKTLIARAVAN 260 (806)
T ss_dssp CCCEEEECSCTTSSHHHHHHHHHH
T ss_pred CCCeEEEECcCCCCHHHHHHHHHH
Confidence 345688999999999999999987
No 388
>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}
Probab=93.51 E-value=0.057 Score=41.29 Aligned_cols=24 Identities=21% Similarity=0.213 Sum_probs=20.9
Q ss_pred cEEEEEEcCCCccHHHHHHHHhcc
Q 035574 15 LSVVAILDSIGLDKTAFTAEAYNS 38 (156)
Q Consensus 15 ~~vi~I~G~gGvGKTtLa~~vy~~ 38 (156)
...|.++|.+|+|||||...+...
T Consensus 3 ~~~i~lvG~~g~GKTTL~n~l~g~ 26 (271)
T 3k53_A 3 LKTVALVGNPNVGKTTIFNALTGL 26 (271)
T ss_dssp CEEEEEEECSSSSHHHHHHHHHTT
T ss_pred eeEEEEECCCCCCHHHHHHHHhCC
Confidence 456899999999999999998764
No 389
>1bif_A 6-phosphofructo-2-kinase/ fructose-2,6-bisphospha; transferase (phospho), phosphatase, hydrolase (phosp glycolysis, bifunctional enzyme; HET: AGS; 2.00A {Rattus norvegicus} SCOP: c.37.1.7 c.60.1.4 PDB: 3bif_A* 2bif_A* 1k6m_A* 1c80_A* 1c7z_A* 1c81_A* 1tip_A* 1fbt_A
Probab=93.50 E-value=0.05 Score=45.20 Aligned_cols=23 Identities=9% Similarity=0.094 Sum_probs=20.4
Q ss_pred cEEEEEEcCCCccHHHHHHHHhc
Q 035574 15 LSVVAILDSIGLDKTAFTAEAYN 37 (156)
Q Consensus 15 ~~vi~I~G~gGvGKTtLa~~vy~ 37 (156)
..+|-++|+.|.||||+++.+..
T Consensus 39 ~~~IvlvGlpGsGKSTia~~La~ 61 (469)
T 1bif_A 39 PTLIVMVGLPARGKTYISKKLTR 61 (469)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHH
T ss_pred cEEEEEECCCCCCHHHHHHHHHH
Confidence 45788999999999999999876
No 390
>3ea0_A ATPase, para family; alpha-beta-alpha sandwich, structural genomics, PSI-2, prote structure initiative; HET: ATP; 2.20A {Chlorobium tepidum}
Probab=93.49 E-value=0.059 Score=39.96 Aligned_cols=24 Identities=13% Similarity=0.021 Sum_probs=19.3
Q ss_pred CcEEEEEEc-CCCccHHHHHHHHhc
Q 035574 14 QLSVVAILD-SIGLDKTAFTAEAYN 37 (156)
Q Consensus 14 ~~~vi~I~G-~gGvGKTtLa~~vy~ 37 (156)
..++|+|++ -||+||||+|..+..
T Consensus 3 ~~~vI~v~s~kGGvGKTt~a~~LA~ 27 (245)
T 3ea0_A 3 AKRVFGFVSAKGGDGGSCIAANFAF 27 (245)
T ss_dssp CCEEEEEEESSTTSSHHHHHHHHHH
T ss_pred CCeEEEEECCCCCcchHHHHHHHHH
Confidence 467899985 589999999887755
No 391
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=93.48 E-value=0.036 Score=47.06 Aligned_cols=24 Identities=13% Similarity=0.250 Sum_probs=21.5
Q ss_pred CcEEEEEEcCCCccHHHHHHHHhc
Q 035574 14 QLSVVAILDSIGLDKTAFTAEAYN 37 (156)
Q Consensus 14 ~~~vi~I~G~gGvGKTtLa~~vy~ 37 (156)
....+.++|.+|+||||||+.+..
T Consensus 107 ~g~~vll~Gp~GtGKTtlar~ia~ 130 (543)
T 3m6a_A 107 KGPILCLAGPPGVGKTSLAKSIAK 130 (543)
T ss_dssp CSCEEEEESSSSSSHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHH
Confidence 456889999999999999999987
No 392
>3v9p_A DTMP kinase, thymidylate kinase; ssgcid, STRU genomics, seattle structural genomics center for infectious transferase; 1.90A {Burkholderia thailandensis}
Probab=93.47 E-value=0.079 Score=40.08 Aligned_cols=23 Identities=13% Similarity=-0.033 Sum_probs=17.9
Q ss_pred cEEEEEEcCCCccHHHHHHHHhc
Q 035574 15 LSVVAILDSIGLDKTAFTAEAYN 37 (156)
Q Consensus 15 ~~vi~I~G~gGvGKTtLa~~vy~ 37 (156)
-..|.|.|..|+||||+++.+.+
T Consensus 25 g~~I~~eG~~GsGKsT~~~~l~~ 47 (227)
T 3v9p_A 25 GKFITFEGIDGAGKTTHLQWFCD 47 (227)
T ss_dssp CCEEEEECCC---CHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 35789999999999999999987
No 393
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=93.47 E-value=0.054 Score=44.85 Aligned_cols=24 Identities=17% Similarity=0.054 Sum_probs=21.0
Q ss_pred CcEEEEEEcCCCccHHHHHHHHhc
Q 035574 14 QLSVVAILDSIGLDKTAFTAEAYN 37 (156)
Q Consensus 14 ~~~vi~I~G~gGvGKTtLa~~vy~ 37 (156)
...++.++|.+|+||||++..+..
T Consensus 97 ~~~vi~i~G~~GsGKTT~~~~LA~ 120 (425)
T 2ffh_A 97 DRNLWFLVGLQGSGKTTTAAKLAL 120 (425)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 457999999999999999888765
No 394
>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}
Probab=93.46 E-value=0.035 Score=43.45 Aligned_cols=21 Identities=19% Similarity=0.088 Sum_probs=18.9
Q ss_pred EEEEEcCCCccHHHHHHHHhc
Q 035574 17 VVAILDSIGLDKTAFTAEAYN 37 (156)
Q Consensus 17 vi~I~G~gGvGKTtLa~~vy~ 37 (156)
-+-++|.+|+|||+||+.+.+
T Consensus 48 ~vll~G~pGtGKT~la~~la~ 68 (331)
T 2r44_A 48 HILLEGVPGLAKTLSVNTLAK 68 (331)
T ss_dssp CEEEESCCCHHHHHHHHHHHH
T ss_pred eEEEECCCCCcHHHHHHHHHH
Confidence 477899999999999999876
No 395
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=93.44 E-value=0.048 Score=44.20 Aligned_cols=23 Identities=17% Similarity=0.150 Sum_probs=20.7
Q ss_pred cEEEEEEcCCCccHHHHHHHHhc
Q 035574 15 LSVVAILDSIGLDKTAFTAEAYN 37 (156)
Q Consensus 15 ~~vi~I~G~gGvGKTtLa~~vy~ 37 (156)
-.+++|+|..|.|||||.+.+..
T Consensus 30 Ge~~~llGpsGsGKSTLLr~iaG 52 (359)
T 3fvq_A 30 GEILFIIGASGCGKTTLLRCLAG 52 (359)
T ss_dssp TCEEEEEESTTSSHHHHHHHHHT
T ss_pred CCEEEEECCCCchHHHHHHHHhc
Confidence 46789999999999999999876
No 396
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=93.42 E-value=0.035 Score=46.04 Aligned_cols=24 Identities=21% Similarity=0.149 Sum_probs=21.1
Q ss_pred CcEEEEEEcCCCccHHHHHHHHhc
Q 035574 14 QLSVVAILDSIGLDKTAFTAEAYN 37 (156)
Q Consensus 14 ~~~vi~I~G~gGvGKTtLa~~vy~ 37 (156)
..+=+=++|.+|.|||+||+.+.+
T Consensus 205 ~prGiLL~GPPGtGKT~lakAiA~ 228 (428)
T 4b4t_K 205 PPRGVLLYGPPGTGKTMLVKAVAN 228 (428)
T ss_dssp CCCEEEEESCTTTTHHHHHHHHHH
T ss_pred CCceEEEECCCCCCHHHHHHHHHH
Confidence 345577899999999999999988
No 397
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=93.40 E-value=0.039 Score=44.47 Aligned_cols=23 Identities=13% Similarity=0.105 Sum_probs=20.7
Q ss_pred cEEEEEEcCCCccHHHHHHHHhc
Q 035574 15 LSVVAILDSIGLDKTAFTAEAYN 37 (156)
Q Consensus 15 ~~vi~I~G~gGvGKTtLa~~vy~ 37 (156)
.+-+-|+|.+|+|||+||+.+.+
T Consensus 148 ~~~vLL~GppGtGKT~la~aia~ 170 (389)
T 3vfd_A 148 ARGLLLFGPPGNGKTMLAKAVAA 170 (389)
T ss_dssp CSEEEEESSTTSCHHHHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHHHHH
Confidence 45688999999999999999987
No 398
>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A*
Probab=93.39 E-value=0.027 Score=39.69 Aligned_cols=24 Identities=17% Similarity=0.187 Sum_probs=10.2
Q ss_pred cEEEEEEcCCCccHHHHHHHHhcc
Q 035574 15 LSVVAILDSIGLDKTAFTAEAYNS 38 (156)
Q Consensus 15 ~~vi~I~G~gGvGKTtLa~~vy~~ 38 (156)
..-|.|+|..|+|||||...+.++
T Consensus 8 ~~ki~v~G~~~~GKssl~~~l~~~ 31 (183)
T 2fu5_C 8 LFKLLLIGDSGVGKTCVLFRFSED 31 (183)
T ss_dssp EEEEEEECCCCC------------
T ss_pred ceEEEEECCCCCCHHHHHHHHHhC
Confidence 456889999999999999887654
No 399
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=93.38 E-value=0.05 Score=43.98 Aligned_cols=23 Identities=22% Similarity=0.167 Sum_probs=20.6
Q ss_pred cEEEEEEcCCCccHHHHHHHHhc
Q 035574 15 LSVVAILDSIGLDKTAFTAEAYN 37 (156)
Q Consensus 15 ~~vi~I~G~gGvGKTtLa~~vy~ 37 (156)
-.+++|+|..|.|||||.+.+..
T Consensus 41 Ge~~~llGpnGsGKSTLLr~iaG 63 (355)
T 1z47_A 41 GEMVGLLGPSGSGKTTILRLIAG 63 (355)
T ss_dssp TCEEEEECSTTSSHHHHHHHHHT
T ss_pred CCEEEEECCCCCcHHHHHHHHhC
Confidence 35789999999999999999875
No 400
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=93.37 E-value=0.048 Score=45.03 Aligned_cols=24 Identities=8% Similarity=0.129 Sum_probs=21.2
Q ss_pred cEEEEEEcCCCccHHHHHHHHhcc
Q 035574 15 LSVVAILDSIGLDKTAFTAEAYNS 38 (156)
Q Consensus 15 ~~vi~I~G~gGvGKTtLa~~vy~~ 38 (156)
.+-+-++|.+|+|||+||+.+++.
T Consensus 167 ~~~vLL~GppGtGKT~lA~aia~~ 190 (444)
T 2zan_A 167 WRGILLFGPPGTGKSYLAKAVATE 190 (444)
T ss_dssp CSEEEEECSTTSSHHHHHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHHHHHH
Confidence 467889999999999999999883
No 401
>2aka_B Dynamin-1; fusion protein, GTPase domain, myosin, contractIle protein; 1.90A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 3l43_A*
Probab=93.36 E-value=0.1 Score=39.92 Aligned_cols=26 Identities=12% Similarity=0.193 Sum_probs=22.5
Q ss_pred CcEEEEEEcCCCccHHHHHHHHhccc
Q 035574 14 QLSVVAILDSIGLDKTAFTAEAYNSS 39 (156)
Q Consensus 14 ~~~vi~I~G~gGvGKTtLa~~vy~~~ 39 (156)
....|.|+|.+|+|||||...+....
T Consensus 25 ~~~~i~vvG~~~~GKSSLln~l~g~~ 50 (299)
T 2aka_B 25 DLPQIAVVGGQSAGKSSVLENFVGRD 50 (299)
T ss_dssp CCCEEEEEEBTTSCHHHHHHHHHTSC
T ss_pred CCCeEEEEeCCCCCHHHHHHHHHCCC
Confidence 45679999999999999999998754
No 402
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=93.32 E-value=0.037 Score=46.00 Aligned_cols=25 Identities=12% Similarity=0.046 Sum_probs=21.6
Q ss_pred CCcEEEEEEcCCCccHHHHHHHHhc
Q 035574 13 TQLSVVAILDSIGLDKTAFTAEAYN 37 (156)
Q Consensus 13 ~~~~vi~I~G~gGvGKTtLa~~vy~ 37 (156)
...+=+=++|.+|.|||.||+.+.+
T Consensus 213 ~~prGvLLyGPPGTGKTllAkAiA~ 237 (434)
T 4b4t_M 213 RAPKGALMYGPPGTGKTLLARACAA 237 (434)
T ss_dssp CCCCEEEEESCTTSSHHHHHHHHHH
T ss_pred CCCCeeEEECcCCCCHHHHHHHHHH
Confidence 3456678899999999999999988
No 403
>3lv8_A DTMP kinase, thymidylate kinase; structural genomics, in diseases, center for structural genomics of infectious DISE ATP-binding; HET: ADP TMP TYD; 1.80A {Vibrio cholerae o1 biovar eltor} PDB: 3n2i_A*
Probab=93.31 E-value=0.13 Score=39.08 Aligned_cols=23 Identities=13% Similarity=0.066 Sum_probs=21.0
Q ss_pred cEEEEEEcCCCccHHHHHHHHhc
Q 035574 15 LSVVAILDSIGLDKTAFTAEAYN 37 (156)
Q Consensus 15 ~~vi~I~G~gGvGKTtLa~~vy~ 37 (156)
...|.|.|..|+||||+++.+.+
T Consensus 27 ~~~i~~eG~~GsGKsT~~~~l~~ 49 (236)
T 3lv8_A 27 AKFIVIEGLEGAGKSTAIQVVVE 49 (236)
T ss_dssp CCEEEEEESTTSCHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 46899999999999999999987
No 404
>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*
Probab=93.30 E-value=0.44 Score=37.47 Aligned_cols=23 Identities=13% Similarity=0.072 Sum_probs=19.7
Q ss_pred cEEEEEEcCCCccHHHHHHHHhc
Q 035574 15 LSVVAILDSIGLDKTAFTAEAYN 37 (156)
Q Consensus 15 ~~vi~I~G~gGvGKTtLa~~vy~ 37 (156)
...+-++|..|+|||++|+.+..
T Consensus 24 ~~a~L~~G~~G~GKt~~a~~la~ 46 (334)
T 1a5t_A 24 HHALLIQALPGMGDDALIYALSR 46 (334)
T ss_dssp CSEEEEECCTTSCHHHHHHHHHH
T ss_pred ceeEEEECCCCchHHHHHHHHHH
Confidence 45678999999999999998765
No 405
>3gmt_A Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucleotide biosynthesis, nucleotide-BIND transferase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B}
Probab=93.26 E-value=0.05 Score=41.47 Aligned_cols=22 Identities=14% Similarity=0.048 Sum_probs=19.6
Q ss_pred EEEEEEcCCCccHHHHHHHHhc
Q 035574 16 SVVAILDSIGLDKTAFTAEAYN 37 (156)
Q Consensus 16 ~vi~I~G~gGvGKTtLa~~vy~ 37 (156)
-.++|.|++|+||||+|+.+.+
T Consensus 9 ~~~~~~G~pGsGKsT~a~~L~~ 30 (230)
T 3gmt_A 9 MRLILLGAPGAGKGTQANFIKE 30 (230)
T ss_dssp CEEEEECCTTSCHHHHHHHHHH
T ss_pred cceeeECCCCCCHHHHHHHHHH
Confidence 3579999999999999998866
No 406
>4tmk_A Protein (thymidylate kinase); ATP:DTMP phosphotransferase, transferase; HET: T5A; 1.98A {Escherichia coli} SCOP: c.37.1.1 PDB: 5tmp_A*
Probab=93.22 E-value=0.15 Score=38.05 Aligned_cols=22 Identities=18% Similarity=0.089 Sum_probs=20.2
Q ss_pred EEEEEEcCCCccHHHHHHHHhc
Q 035574 16 SVVAILDSIGLDKTAFTAEAYN 37 (156)
Q Consensus 16 ~vi~I~G~gGvGKTtLa~~vy~ 37 (156)
..|.+.|..|.||||+++.+.+
T Consensus 4 ~~i~~eG~~gsGKsT~~~~l~~ 25 (213)
T 4tmk_A 4 KYIVIEGLEGAGKTTARNVVVE 25 (213)
T ss_dssp CEEEEEECTTSCHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4789999999999999999987
No 407
>3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold, hydro; HET: ADP; 2.91A {Escherichia coli}
Probab=93.22 E-value=0.036 Score=46.84 Aligned_cols=23 Identities=17% Similarity=0.200 Sum_probs=20.1
Q ss_pred EEEEEEcCCCccHHHHHHHHhcc
Q 035574 16 SVVAILDSIGLDKTAFTAEAYNS 38 (156)
Q Consensus 16 ~vi~I~G~gGvGKTtLa~~vy~~ 38 (156)
.-+-++|.+|+|||+||+.+.+.
T Consensus 42 ~~VLL~GpPGtGKT~LAraLa~~ 64 (500)
T 3nbx_X 42 ESVFLLGPPGIAKSLIARRLKFA 64 (500)
T ss_dssp CEEEEECCSSSSHHHHHHHGGGG
T ss_pred CeeEeecCchHHHHHHHHHHHHH
Confidence 35778999999999999999873
No 408
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=93.21 E-value=0.044 Score=46.04 Aligned_cols=23 Identities=17% Similarity=0.138 Sum_probs=20.5
Q ss_pred cEEEEEEcCCCccHHHHHHHHhc
Q 035574 15 LSVVAILDSIGLDKTAFTAEAYN 37 (156)
Q Consensus 15 ~~vi~I~G~gGvGKTtLa~~vy~ 37 (156)
.+-+-|+|.+|+|||+||+.+.+
T Consensus 238 ~~~vLL~GppGtGKT~lAraia~ 260 (489)
T 3hu3_A 238 PRGILLYGPPGTGKTLIARAVAN 260 (489)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHH
T ss_pred CCcEEEECcCCCCHHHHHHHHHH
Confidence 45578999999999999999987
No 409
>3ug7_A Arsenical pump-driving ATPase; tail-anchored, membrane protein, targeting factor, ATP-bindi TRC40, ARSA, nucleotide-binding; HET: ADP; 2.90A {Methanocaldococcus jannaschii} PDB: 3ug6_A*
Probab=93.20 E-value=0.11 Score=41.52 Aligned_cols=26 Identities=15% Similarity=0.073 Sum_probs=18.7
Q ss_pred CCCcEEEEEEcCCCccHHHHHHHHhc
Q 035574 12 PTQLSVVAILDSIGLDKTAFTAEAYN 37 (156)
Q Consensus 12 ~~~~~vi~I~G~gGvGKTtLa~~vy~ 37 (156)
....+++-+-|-||+||||+|..+..
T Consensus 23 ~~~~~i~v~sgKGGvGKTTvA~~LA~ 48 (349)
T 3ug7_A 23 KDGTKYIMFGGKGGVGKTTMSAATGV 48 (349)
T ss_dssp SCSCEEEEEECSSSTTHHHHHHHHHH
T ss_pred cCCCEEEEEeCCCCccHHHHHHHHHH
Confidence 33445555669999999998877644
No 410
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}
Probab=93.19 E-value=0.056 Score=43.76 Aligned_cols=23 Identities=26% Similarity=0.133 Sum_probs=20.7
Q ss_pred cEEEEEEcCCCccHHHHHHHHhc
Q 035574 15 LSVVAILDSIGLDKTAFTAEAYN 37 (156)
Q Consensus 15 ~~vi~I~G~gGvGKTtLa~~vy~ 37 (156)
-.+++|+|..|.|||||.+.+..
T Consensus 29 Ge~~~llGpnGsGKSTLLr~iaG 51 (359)
T 2yyz_A 29 GEFVALLGPSGCGKTTTLLMLAG 51 (359)
T ss_dssp TCEEEEECSTTSSHHHHHHHHHT
T ss_pred CCEEEEEcCCCchHHHHHHHHHC
Confidence 46789999999999999999876
No 411
>2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8
Probab=93.19 E-value=0.056 Score=40.10 Aligned_cols=23 Identities=13% Similarity=0.189 Sum_probs=19.7
Q ss_pred cEEEEEEcCCCccHHHHHHHHhc
Q 035574 15 LSVVAILDSIGLDKTAFTAEAYN 37 (156)
Q Consensus 15 ~~vi~I~G~gGvGKTtLa~~vy~ 37 (156)
..-|.|+|-+|+|||||...+..
T Consensus 37 ~~kVvlvG~~~vGKSSLl~r~~~ 59 (211)
T 2g3y_A 37 YYRVVLIGEQGVGKSTLANIFAG 59 (211)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHC
T ss_pred ceEEEEECCCCCCHHHHHHHHHh
Confidence 34589999999999999998864
No 412
>3k9g_A PF-32 protein; ssgcid, SBRI, decode biostructures, UW, NIH, niaid, borellia burgdorferi, plasmid partition protein, iodide; 2.25A {Borrelia burgdorferi} PDB: 3k9h_A
Probab=93.18 E-value=0.059 Score=40.84 Aligned_cols=25 Identities=12% Similarity=0.082 Sum_probs=20.0
Q ss_pred CCcEEEEEE-cCCCccHHHHHHHHhc
Q 035574 13 TQLSVVAIL-DSIGLDKTAFTAEAYN 37 (156)
Q Consensus 13 ~~~~vi~I~-G~gGvGKTtLa~~vy~ 37 (156)
...++|+|+ +-||+||||+|..+..
T Consensus 25 ~~~~vI~v~s~kGGvGKTT~a~~LA~ 50 (267)
T 3k9g_A 25 KKPKIITIASIKGGVGKSTSAIILAT 50 (267)
T ss_dssp -CCEEEEECCSSSSSCHHHHHHHHHH
T ss_pred CCCeEEEEEeCCCCchHHHHHHHHHH
Confidence 457889886 5689999999888766
No 413
>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A
Probab=93.17 E-value=0.056 Score=43.90 Aligned_cols=23 Identities=17% Similarity=0.075 Sum_probs=20.5
Q ss_pred cEEEEEEcCCCccHHHHHHHHhc
Q 035574 15 LSVVAILDSIGLDKTAFTAEAYN 37 (156)
Q Consensus 15 ~~vi~I~G~gGvGKTtLa~~vy~ 37 (156)
-.+++|+|..|.|||||.+.+..
T Consensus 29 Ge~~~llGpnGsGKSTLLr~iaG 51 (372)
T 1g29_1 29 GEFMILLGPSGCGKTTTLRMIAG 51 (372)
T ss_dssp TCEEEEECSTTSSHHHHHHHHHT
T ss_pred CCEEEEECCCCcHHHHHHHHHHc
Confidence 35789999999999999999876
No 414
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}
Probab=93.15 E-value=0.057 Score=43.77 Aligned_cols=23 Identities=17% Similarity=0.163 Sum_probs=20.7
Q ss_pred cEEEEEEcCCCccHHHHHHHHhc
Q 035574 15 LSVVAILDSIGLDKTAFTAEAYN 37 (156)
Q Consensus 15 ~~vi~I~G~gGvGKTtLa~~vy~ 37 (156)
-.+++|+|..|.|||||.+.+..
T Consensus 29 Ge~~~llGpnGsGKSTLLr~iaG 51 (362)
T 2it1_A 29 GEFMALLGPSGSGKSTLLYTIAG 51 (362)
T ss_dssp TCEEEEECCTTSSHHHHHHHHHT
T ss_pred CCEEEEECCCCchHHHHHHHHhc
Confidence 46889999999999999999876
No 415
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=93.12 E-value=0.048 Score=46.06 Aligned_cols=20 Identities=20% Similarity=0.308 Sum_probs=18.9
Q ss_pred EEEEcCCCccHHHHHHHHhc
Q 035574 18 VAILDSIGLDKTAFTAEAYN 37 (156)
Q Consensus 18 i~I~G~gGvGKTtLa~~vy~ 37 (156)
+-++|.+|+||||||+.+..
T Consensus 67 vLL~GppGtGKTtLaraIa~ 86 (499)
T 2dhr_A 67 VLLVGPPGVGKTHLARAVAG 86 (499)
T ss_dssp EEEECSSSSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 78999999999999999987
No 416
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=93.10 E-value=0.042 Score=45.72 Aligned_cols=25 Identities=16% Similarity=0.096 Sum_probs=21.5
Q ss_pred CCcEEEEEEcCCCccHHHHHHHHhc
Q 035574 13 TQLSVVAILDSIGLDKTAFTAEAYN 37 (156)
Q Consensus 13 ~~~~vi~I~G~gGvGKTtLa~~vy~ 37 (156)
...+=+=++|.+|.|||+||+.+.+
T Consensus 213 ~~prGvLL~GPPGtGKTllAkAiA~ 237 (437)
T 4b4t_L 213 KPPKGVLLYGPPGTGKTLLAKAVAA 237 (437)
T ss_dssp CCCCEEEEESCTTSSHHHHHHHHHH
T ss_pred CCCCeEEEECCCCCcHHHHHHHHHH
Confidence 3356677899999999999999988
No 417
>3ld9_A DTMP kinase, thymidylate kinase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ehrlich chaffeensis; 2.15A {Ehrlichia chaffeensis}
Probab=93.10 E-value=0.076 Score=40.13 Aligned_cols=24 Identities=13% Similarity=-0.057 Sum_probs=21.6
Q ss_pred CcEEEEEEcCCCccHHHHHHHHhc
Q 035574 14 QLSVVAILDSIGLDKTAFTAEAYN 37 (156)
Q Consensus 14 ~~~vi~I~G~gGvGKTtLa~~vy~ 37 (156)
....|.+.|..|+||||+++.+.+
T Consensus 20 ~~~~i~~~G~~g~GKst~~~~l~~ 43 (223)
T 3ld9_A 20 GSMFITFEGIDGSGKTTQSHLLAE 43 (223)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 457899999999999999999987
No 418
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=93.09 E-value=0.045 Score=45.98 Aligned_cols=21 Identities=14% Similarity=0.181 Sum_probs=19.3
Q ss_pred EEEEEcCCCccHHHHHHHHhc
Q 035574 17 VVAILDSIGLDKTAFTAEAYN 37 (156)
Q Consensus 17 vi~I~G~gGvGKTtLa~~vy~ 37 (156)
-+-++|.+|.|||+||+.+.+
T Consensus 51 gvLL~GppGtGKT~Laraia~ 71 (476)
T 2ce7_A 51 GILLVGPPGTGKTLLARAVAG 71 (476)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHH
Confidence 367999999999999999988
No 419
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12
Probab=93.08 E-value=0.051 Score=43.81 Aligned_cols=23 Identities=26% Similarity=0.192 Sum_probs=20.7
Q ss_pred cEEEEEEcCCCccHHHHHHHHhc
Q 035574 15 LSVVAILDSIGLDKTAFTAEAYN 37 (156)
Q Consensus 15 ~~vi~I~G~gGvGKTtLa~~vy~ 37 (156)
-.+++|+|..|.|||||.+.+..
T Consensus 26 Ge~~~llGpnGsGKSTLLr~iaG 48 (348)
T 3d31_A 26 GEYFVILGPTGAGKTLFLELIAG 48 (348)
T ss_dssp TCEEEEECCCTHHHHHHHHHHHT
T ss_pred CCEEEEECCCCccHHHHHHHHHc
Confidence 35889999999999999999876
No 420
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=93.07 E-value=0.059 Score=44.03 Aligned_cols=23 Identities=13% Similarity=0.102 Sum_probs=20.7
Q ss_pred cEEEEEEcCCCccHHHHHHHHhc
Q 035574 15 LSVVAILDSIGLDKTAFTAEAYN 37 (156)
Q Consensus 15 ~~vi~I~G~gGvGKTtLa~~vy~ 37 (156)
-.+++|+|..|.|||||.+.+..
T Consensus 29 Ge~~~llGpsGsGKSTLLr~iaG 51 (381)
T 3rlf_A 29 GEFVVFVGPSGCGKSTLLRMIAG 51 (381)
T ss_dssp TCEEEEECCTTSSHHHHHHHHHT
T ss_pred CCEEEEEcCCCchHHHHHHHHHc
Confidence 46889999999999999999876
No 421
>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A
Probab=93.05 E-value=0.075 Score=40.08 Aligned_cols=26 Identities=12% Similarity=0.112 Sum_probs=21.6
Q ss_pred CcEEEEEEcCCCccHHHHHHHHhccc
Q 035574 14 QLSVVAILDSIGLDKTAFTAEAYNSS 39 (156)
Q Consensus 14 ~~~vi~I~G~gGvGKTtLa~~vy~~~ 39 (156)
....|.|+|.+|+|||||...+....
T Consensus 21 ~~~~I~lvG~~g~GKStl~n~l~~~~ 46 (260)
T 2xtp_A 21 SELRIILVGKTGTGKSAAGNSILRKQ 46 (260)
T ss_dssp CCEEEEEEECTTSCHHHHHHHHHTSC
T ss_pred CceEEEEECCCCCCHHHHHHHHhCCC
Confidence 34678999999999999999986543
No 422
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=93.04 E-value=0.059 Score=42.24 Aligned_cols=21 Identities=10% Similarity=0.196 Sum_probs=19.6
Q ss_pred EEEEEEcCCCccHHHHHHHHh
Q 035574 16 SVVAILDSIGLDKTAFTAEAY 36 (156)
Q Consensus 16 ~vi~I~G~gGvGKTtLa~~vy 36 (156)
.++.++|..|+|||||.+.+.
T Consensus 166 ~i~~l~G~sG~GKSTLln~l~ 186 (302)
T 2yv5_A 166 FICILAGPSGVGKSSILSRLT 186 (302)
T ss_dssp CEEEEECSTTSSHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHH
Confidence 578999999999999999997
No 423
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*
Probab=93.02 E-value=0.06 Score=43.77 Aligned_cols=23 Identities=17% Similarity=0.091 Sum_probs=20.6
Q ss_pred cEEEEEEcCCCccHHHHHHHHhc
Q 035574 15 LSVVAILDSIGLDKTAFTAEAYN 37 (156)
Q Consensus 15 ~~vi~I~G~gGvGKTtLa~~vy~ 37 (156)
-.+++|+|..|.|||||.+.+..
T Consensus 37 Ge~~~llGpnGsGKSTLLr~iaG 59 (372)
T 1v43_A 37 GEFLVLLGPSGCGKTTTLRMIAG 59 (372)
T ss_dssp TCEEEEECCTTSSHHHHHHHHHT
T ss_pred CCEEEEECCCCChHHHHHHHHHc
Confidence 46889999999999999999875
No 424
>3b1v_A Ferrous iron uptake transporter protein B; G protein, iron transport, GTPase, transmembrane, potassium; HET: GGM; 1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A* 3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A*
Probab=93.00 E-value=0.099 Score=40.41 Aligned_cols=24 Identities=13% Similarity=0.159 Sum_probs=21.0
Q ss_pred cEEEEEEcCCCccHHHHHHHHhcc
Q 035574 15 LSVVAILDSIGLDKTAFTAEAYNS 38 (156)
Q Consensus 15 ~~vi~I~G~gGvGKTtLa~~vy~~ 38 (156)
...|.++|.+|+|||||...+...
T Consensus 3 ~~kI~lvG~~nvGKSTL~n~L~g~ 26 (272)
T 3b1v_A 3 MTEIALIGNPNSGKTSLFNLITGH 26 (272)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHCC
T ss_pred ceEEEEECCCCCCHHHHHHHHHCC
Confidence 356899999999999999999874
No 425
>3cwq_A Para family chromosome partitioning protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; HET: ADP; 2.47A {Synechocystis SP}
Probab=92.98 E-value=0.065 Score=39.49 Aligned_cols=21 Identities=14% Similarity=0.162 Sum_probs=17.3
Q ss_pred EEEEE-cCCCccHHHHHHHHhc
Q 035574 17 VVAIL-DSIGLDKTAFTAEAYN 37 (156)
Q Consensus 17 vi~I~-G~gGvGKTtLa~~vy~ 37 (156)
+|+|+ +-||+||||+|..+..
T Consensus 2 vI~v~s~KGGvGKTT~a~~LA~ 23 (209)
T 3cwq_A 2 IITVASFKGGVGKTTTAVHLSA 23 (209)
T ss_dssp EEEEEESSTTSSHHHHHHHHHH
T ss_pred EEEEEcCCCCCcHHHHHHHHHH
Confidence 56776 6799999999988866
No 426
>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*
Probab=92.98 E-value=0.059 Score=43.30 Aligned_cols=24 Identities=17% Similarity=0.246 Sum_probs=21.3
Q ss_pred cEEEEEEcCCCccHHHHHHHHhcc
Q 035574 15 LSVVAILDSIGLDKTAFTAEAYNS 38 (156)
Q Consensus 15 ~~vi~I~G~gGvGKTtLa~~vy~~ 38 (156)
-.+++|+|..|.|||||.+.+...
T Consensus 71 Gq~~gIiG~nGaGKTTLl~~I~g~ 94 (347)
T 2obl_A 71 GQRIGIFAGSGVGKSTLLGMICNG 94 (347)
T ss_dssp TCEEEEEECTTSSHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHhcC
Confidence 467899999999999999998774
No 427
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=92.98 E-value=0.045 Score=45.13 Aligned_cols=23 Identities=17% Similarity=0.130 Sum_probs=20.3
Q ss_pred cEEEEEEcCCCccHHHHHHHHhc
Q 035574 15 LSVVAILDSIGLDKTAFTAEAYN 37 (156)
Q Consensus 15 ~~vi~I~G~gGvGKTtLa~~vy~ 37 (156)
.+=+=++|.+|.|||.||+.+.+
T Consensus 182 prGvLL~GPPGTGKTllAkAiA~ 204 (405)
T 4b4t_J 182 PKGVILYGPPGTGKTLLARAVAH 204 (405)
T ss_dssp CCCEEEESCSSSSHHHHHHHHHH
T ss_pred CCceEEeCCCCCCHHHHHHHHHH
Confidence 45567899999999999999988
No 428
>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*
Probab=92.97 E-value=0.063 Score=44.29 Aligned_cols=22 Identities=18% Similarity=0.383 Sum_probs=19.7
Q ss_pred EEEEEEcCCCccHHHHHHHHhc
Q 035574 16 SVVAILDSIGLDKTAFTAEAYN 37 (156)
Q Consensus 16 ~vi~I~G~gGvGKTtLa~~vy~ 37 (156)
.+|.|.|..|+||||||..+..
T Consensus 3 ~~i~i~GptgsGKttla~~La~ 24 (409)
T 3eph_A 3 KVIVIAGTTGVGKSQLSIQLAQ 24 (409)
T ss_dssp EEEEEEECSSSSHHHHHHHHHH
T ss_pred cEEEEECcchhhHHHHHHHHHH
Confidence 5789999999999999998865
No 429
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=92.96 E-value=0.065 Score=43.33 Aligned_cols=24 Identities=13% Similarity=0.288 Sum_probs=20.6
Q ss_pred CcEEEEEEcCCCccHHHHHHHHhc
Q 035574 14 QLSVVAILDSIGLDKTAFTAEAYN 37 (156)
Q Consensus 14 ~~~vi~I~G~gGvGKTtLa~~vy~ 37 (156)
.-.++.|+|..|.|||||++.+..
T Consensus 135 ~g~~i~ivG~~GsGKTTll~~l~~ 158 (372)
T 2ewv_A 135 KMGLILVTGPTGSGKSTTIASMID 158 (372)
T ss_dssp SSEEEEEECSSSSSHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHh
Confidence 356899999999999999888754
No 430
>4dkx_A RAS-related protein RAB-6A; GTP binding fold, membrane trafficking, GTP, cytosol, protei transport; HET: GDP; 1.90A {Homo sapiens} PDB: 3bbp_A*
Probab=92.96 E-value=0.066 Score=39.90 Aligned_cols=22 Identities=14% Similarity=0.179 Sum_probs=18.8
Q ss_pred EEEEEcCCCccHHHHHHHHhcc
Q 035574 17 VVAILDSIGLDKTAFTAEAYNS 38 (156)
Q Consensus 17 vi~I~G~gGvGKTtLa~~vy~~ 38 (156)
-|.|+|-+|+|||+|...+.++
T Consensus 15 KivlvGd~~VGKTsLi~r~~~~ 36 (216)
T 4dkx_A 15 KLVFLGEQSVGKTSLITRFMYD 36 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCcCHHHHHHHHHhC
Confidence 4788999999999999987654
No 431
>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*
Probab=92.94 E-value=0.044 Score=44.22 Aligned_cols=23 Identities=26% Similarity=0.196 Sum_probs=20.6
Q ss_pred cEEEEEEcCCCccHHHHHHHHhc
Q 035574 15 LSVVAILDSIGLDKTAFTAEAYN 37 (156)
Q Consensus 15 ~~vi~I~G~gGvGKTtLa~~vy~ 37 (156)
-.+++|+|..|.|||||.+.+..
T Consensus 31 Ge~~~llGpnGsGKSTLLr~iaG 53 (353)
T 1oxx_K 31 GERFGILGPSGAGKTTFMRIIAG 53 (353)
T ss_dssp TCEEEEECSCHHHHHHHHHHHHT
T ss_pred CCEEEEECCCCCcHHHHHHHHhC
Confidence 46889999999999999999875
No 432
>1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote initiative, RSGI, structural genomics, hydrolase; HET: GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8 d.52.3.1
Probab=92.89 E-value=0.079 Score=41.54 Aligned_cols=25 Identities=16% Similarity=0.175 Sum_probs=21.6
Q ss_pred CcEEEEEEcCCCccHHHHHHHHhcc
Q 035574 14 QLSVVAILDSIGLDKTAFTAEAYNS 38 (156)
Q Consensus 14 ~~~vi~I~G~gGvGKTtLa~~vy~~ 38 (156)
....|.|+|.+|+|||||...+...
T Consensus 6 ~~g~V~ivG~~nvGKSTLln~l~g~ 30 (301)
T 1wf3_A 6 YSGFVAIVGKPNVGKSTLLNNLLGV 30 (301)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHTS
T ss_pred cCCEEEEECCCCCCHHHHHHHHhCC
Confidence 3467899999999999999998764
No 433
>3q9l_A Septum site-determining protein MIND; ATPase, bacterial cell division inhibitor, MINC, MINE, cell hydrolase; HET: ATP; 2.34A {Escherichia coli} PDB: 3r9i_A* 3r9j_A*
Probab=92.89 E-value=0.077 Score=39.70 Aligned_cols=22 Identities=18% Similarity=0.265 Sum_probs=17.4
Q ss_pred EEEEEEc-CCCccHHHHHHHHhc
Q 035574 16 SVVAILD-SIGLDKTAFTAEAYN 37 (156)
Q Consensus 16 ~vi~I~G-~gGvGKTtLa~~vy~ 37 (156)
++|+|++ -||+||||+|..+..
T Consensus 3 ~vi~v~s~kgGvGKTt~a~~LA~ 25 (260)
T 3q9l_A 3 RIIVVTSGKGGVGKTTSSAAIAT 25 (260)
T ss_dssp EEEEEECSSTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCcHHHHHHHHHH
Confidence 6788874 588999998887654
No 434
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=92.88 E-value=0.053 Score=43.64 Aligned_cols=23 Identities=17% Similarity=0.239 Sum_probs=20.5
Q ss_pred cEEEEEEcCCCccHHHHHHHHhc
Q 035574 15 LSVVAILDSIGLDKTAFTAEAYN 37 (156)
Q Consensus 15 ~~vi~I~G~gGvGKTtLa~~vy~ 37 (156)
-..+.|+|..|.|||||++.+..
T Consensus 175 G~~i~ivG~sGsGKSTll~~l~~ 197 (361)
T 2gza_A 175 ERVIVVAGETGSGKTTLMKALMQ 197 (361)
T ss_dssp TCCEEEEESSSSCHHHHHHHHHT
T ss_pred CCEEEEECCCCCCHHHHHHHHHh
Confidence 35789999999999999999876
No 435
>3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila}
Probab=92.84 E-value=0.069 Score=40.81 Aligned_cols=23 Identities=13% Similarity=0.133 Sum_probs=20.4
Q ss_pred EEEEEEcCCCccHHHHHHHHhcc
Q 035574 16 SVVAILDSIGLDKTAFTAEAYNS 38 (156)
Q Consensus 16 ~vi~I~G~gGvGKTtLa~~vy~~ 38 (156)
+.|.++|.+|+|||||...+...
T Consensus 2 ~kI~lvG~~n~GKSTL~n~L~g~ 24 (256)
T 3iby_A 2 THALLIGNPNCGKTTLFNALTNA 24 (256)
T ss_dssp CEEEEEESTTSSHHHHHHHHHTT
T ss_pred CEEEEECCCCCCHHHHHHHHHCC
Confidence 46899999999999999998764
No 436
>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G
Probab=92.83 E-value=0.032 Score=43.67 Aligned_cols=20 Identities=15% Similarity=0.162 Sum_probs=18.8
Q ss_pred EEEEcCCCccHHHHHHHHhc
Q 035574 18 VAILDSIGLDKTAFTAEAYN 37 (156)
Q Consensus 18 i~I~G~gGvGKTtLa~~vy~ 37 (156)
+-++|.+|+|||+||+.+.+
T Consensus 48 vLl~G~~GtGKT~la~~la~ 67 (350)
T 1g8p_A 48 VLVFGDRGTGKSTAVRALAA 67 (350)
T ss_dssp EEEECCGGGCTTHHHHHHHH
T ss_pred EEEECCCCccHHHHHHHHHH
Confidence 77899999999999999987
No 437
>3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae}
Probab=92.82 E-value=0.067 Score=39.27 Aligned_cols=24 Identities=13% Similarity=0.275 Sum_probs=20.5
Q ss_pred cEEEEEEcCCCccHHHHHHHHhcc
Q 035574 15 LSVVAILDSIGLDKTAFTAEAYNS 38 (156)
Q Consensus 15 ~~vi~I~G~gGvGKTtLa~~vy~~ 38 (156)
.--|.|+|..|+|||||...+.+.
T Consensus 13 ~~ki~v~G~~~vGKSsli~~l~~~ 36 (223)
T 3cpj_B 13 LFKIVLIGDSGVGKSNLLSRFTKN 36 (223)
T ss_dssp EEEEEEESCTTSSHHHHHHHHHHC
T ss_pred eeEEEEECcCCCCHHHHHHHHhcC
Confidence 456789999999999999998764
No 438
>3t5d_A Septin-7; GTP-binding protein, cytoskeleton, signaling protein; HET: GDP; 3.30A {Homo sapiens} PDB: 3tw4_A*
Probab=92.81 E-value=0.062 Score=41.18 Aligned_cols=22 Identities=14% Similarity=0.368 Sum_probs=19.1
Q ss_pred EEEEEcCCCccHHHHHHHHhcc
Q 035574 17 VVAILDSIGLDKTAFTAEAYNS 38 (156)
Q Consensus 17 vi~I~G~gGvGKTtLa~~vy~~ 38 (156)
-|.|+|.+|+|||||...++..
T Consensus 10 ~I~vvG~~g~GKSTLin~L~~~ 31 (274)
T 3t5d_A 10 TLMVVGESGLGKSTLINSLFLT 31 (274)
T ss_dssp EEEEEECTTSSHHHHHHHHSSS
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 4789999999999999987653
No 439
>3ez2_A Plasmid partition protein A; type IA, DNA binding, winged-HTH, DNA bindin; HET: ADP EPE; 2.05A {Escherichia coli} PDB: 3ez6_A* 3ez7_A
Probab=92.80 E-value=0.084 Score=42.64 Aligned_cols=26 Identities=23% Similarity=0.094 Sum_probs=20.8
Q ss_pred CCCcEEEEEE-cCCCccHHHHHHHHhc
Q 035574 12 PTQLSVVAIL-DSIGLDKTAFTAEAYN 37 (156)
Q Consensus 12 ~~~~~vi~I~-G~gGvGKTtLa~~vy~ 37 (156)
....++|+|+ |-||+||||+|..+..
T Consensus 105 ~~~~~vIav~s~KGGvGKTT~a~nLA~ 131 (398)
T 3ez2_A 105 YSEAYVIFISNLKGGVSKTVSTVSLAH 131 (398)
T ss_dssp CCSCEEEEECCSSSSSSHHHHHHHHHH
T ss_pred CCCCeEEEEEeCCCCccHHHHHHHHHH
Confidence 4567899998 7799999998777654
No 440
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=92.80 E-value=0.069 Score=43.27 Aligned_cols=23 Identities=9% Similarity=0.164 Sum_probs=20.9
Q ss_pred EEEEEEcCCCccHHHHHHHHhcc
Q 035574 16 SVVAILDSIGLDKTAFTAEAYNS 38 (156)
Q Consensus 16 ~vi~I~G~gGvGKTtLa~~vy~~ 38 (156)
.++.|+|..|+|||||.+.+...
T Consensus 216 ~~~~lvG~sG~GKSTLln~L~g~ 238 (358)
T 2rcn_A 216 RISIFAGQSGVGKSSLLNALLGL 238 (358)
T ss_dssp SEEEEECCTTSSHHHHHHHHHCC
T ss_pred CEEEEECCCCccHHHHHHHHhcc
Confidence 47899999999999999999874
No 441
>1m8p_A Sulfate adenylyltransferase; rossmann fold, phosphosulfate binding, T-state; HET: PPS; 2.60A {Penicillium chrysogenum} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1i2d_A*
Probab=92.76 E-value=0.077 Score=45.50 Aligned_cols=23 Identities=9% Similarity=-0.060 Sum_probs=20.9
Q ss_pred cEEEEEEcCCCccHHHHHHHHhc
Q 035574 15 LSVVAILDSIGLDKTAFTAEAYN 37 (156)
Q Consensus 15 ~~vi~I~G~gGvGKTtLa~~vy~ 37 (156)
..+|.|.|+.|.||||+|+.+..
T Consensus 396 ~~~I~l~GlsGSGKSTiA~~La~ 418 (573)
T 1m8p_A 396 GFTIFLTGYMNSGKDAIARALQV 418 (573)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHH
T ss_pred ceEEEeecCCCCCHHHHHHHHHH
Confidence 46899999999999999999877
No 442
>1x6v_B Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthethase 1; transferase, ATP sulfurylase, APS kinase, PAPS; HET: ADP; 1.75A {Homo sapiens} SCOP: b.122.1.3 c.26.1.5 c.37.1.4 PDB: 1xjq_B* 1xnj_B* 2qjf_A* 2ofx_A* 2ofw_A*
Probab=92.74 E-value=0.069 Score=46.40 Aligned_cols=24 Identities=17% Similarity=0.064 Sum_probs=21.2
Q ss_pred CcEEEEEEcCCCccHHHHHHHHhc
Q 035574 14 QLSVVAILDSIGLDKTAFTAEAYN 37 (156)
Q Consensus 14 ~~~vi~I~G~gGvGKTtLa~~vy~ 37 (156)
...+|.+.|+.|+||||+|+.+.+
T Consensus 51 ~g~lIvLtGlsGSGKSTlAr~La~ 74 (630)
T 1x6v_B 51 RGCTVWLTGLSGAGKTTVSMALEE 74 (630)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCCEEEEEeCCCCCHHHHHHHHHH
Confidence 457899999999999999998866
No 443
>2oze_A ORF delta'; para, walker type atpases, DNA segregation, PSM19035, plasmid, DNA binding protein; HET: AGS EPE; 1.83A {Streptococcus pyogenes}
Probab=92.74 E-value=0.052 Score=41.81 Aligned_cols=23 Identities=17% Similarity=0.224 Sum_probs=18.3
Q ss_pred cEEEEEEc---CCCccHHHHHHHHhc
Q 035574 15 LSVVAILD---SIGLDKTAFTAEAYN 37 (156)
Q Consensus 15 ~~vi~I~G---~gGvGKTtLa~~vy~ 37 (156)
.++|.|++ -||+||||+|..+..
T Consensus 34 ~~~i~v~~~s~KGGvGKTT~a~nLA~ 59 (298)
T 2oze_A 34 NEAIVILNNYFKGGVGKSKLSTMFAY 59 (298)
T ss_dssp CSCEEEEECCSSSSSSHHHHHHHHHH
T ss_pred CcEEEEEeccCCCCchHHHHHHHHHH
Confidence 45777776 899999998887654
No 444
>3lxw_A GTPase IMAP family member 1; immunity, structural genomics consortium, SGC, immune system; HET: GDP; 2.21A {Homo sapiens} PDB: 3v70_A*
Probab=92.73 E-value=0.073 Score=40.28 Aligned_cols=25 Identities=12% Similarity=0.138 Sum_probs=21.0
Q ss_pred cEEEEEEcCCCccHHHHHHHHhccc
Q 035574 15 LSVVAILDSIGLDKTAFTAEAYNSS 39 (156)
Q Consensus 15 ~~vi~I~G~gGvGKTtLa~~vy~~~ 39 (156)
.--|.++|.+|+|||||...+....
T Consensus 21 ~l~I~lvG~~g~GKSSlin~l~~~~ 45 (247)
T 3lxw_A 21 TRRLILVGRTGAGKSATGNSILGQR 45 (247)
T ss_dssp EEEEEEESSTTSSHHHHHHHHHTSC
T ss_pred ceEEEEECCCCCcHHHHHHHHhCCC
Confidence 3457899999999999999987643
No 445
>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}
Probab=92.65 E-value=0.075 Score=39.27 Aligned_cols=51 Identities=16% Similarity=0.167 Sum_probs=31.7
Q ss_pred CcEEEEEEcCCCccHHHHHHHHhccccccccCceEEEEEcCCCCCHHHHHHHHH
Q 035574 14 QLSVVAILDSIGLDKTAFTAEAYNSSYMKHYFDYLAWIPAPYHYDPDQILDIVA 67 (156)
Q Consensus 14 ~~~vi~I~G~gGvGKTtLa~~vy~~~~v~~~F~~~~wv~vs~~~~~~~l~~~il 67 (156)
.-.++-|.|.+|+|||+||.++..+. ....-...++++.. .+..++.+.+.
T Consensus 29 ~G~l~~i~G~pG~GKT~l~l~~~~~~-~~~~~~~v~~~s~E--~~~~~~~~~~~ 79 (251)
T 2zts_A 29 EGTTVLLTGGTGTGKTTFAAQFIYKG-AEEYGEPGVFVTLE--ERARDLRREMA 79 (251)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHHHH-HHHHCCCEEEEESS--SCHHHHHHHHH
T ss_pred CCeEEEEEeCCCCCHHHHHHHHHHHH-HHhcCCCceeeccc--CCHHHHHHHHH
Confidence 34688899999999999998865421 11222335555543 34556655543
No 446
>3a1s_A Iron(II) transport protein B; FEOB, iron transporter, small GTPase, G protein, GDI; HET: GDP; 1.50A {Thermotoga maritima} PDB: 3a1t_A* 3a1u_A* 3a1v_A* 3a1w_A
Probab=92.65 E-value=0.084 Score=40.32 Aligned_cols=24 Identities=17% Similarity=0.176 Sum_probs=20.7
Q ss_pred cEEEEEEcCCCccHHHHHHHHhcc
Q 035574 15 LSVVAILDSIGLDKTAFTAEAYNS 38 (156)
Q Consensus 15 ~~vi~I~G~gGvGKTtLa~~vy~~ 38 (156)
...|.++|-+|+|||||...+...
T Consensus 5 ~~kI~lvG~~nvGKTsL~n~l~g~ 28 (258)
T 3a1s_A 5 MVKVALAGCPNVGKTSLFNALTGT 28 (258)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHTT
T ss_pred ceEEEEECCCCCCHHHHHHHHHCC
Confidence 356889999999999999998764
No 447
>3io3_A DEHA2D07832P; chaperone, membrane traffic, ATPase; HET: ADP; 1.80A {Debaryomyces hansenii}
Probab=92.63 E-value=0.085 Score=42.41 Aligned_cols=25 Identities=16% Similarity=0.109 Sum_probs=20.4
Q ss_pred CCcEEEEEEcCCCccHHHHHHHHhc
Q 035574 13 TQLSVVAILDSIGLDKTAFTAEAYN 37 (156)
Q Consensus 13 ~~~~vi~I~G~gGvGKTtLa~~vy~ 37 (156)
...+++-+.|.||+||||+|..+..
T Consensus 16 ~~~~i~~~~gkGGvGKTt~a~~lA~ 40 (348)
T 3io3_A 16 DSLKWIFVGGKGGVGKTTTSSSVAV 40 (348)
T ss_dssp TTCSEEEEECSTTSSHHHHHHHHHH
T ss_pred CCcEEEEEeCCCCCcHHHHHHHHHH
Confidence 3467888899999999998877654
No 448
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=92.62 E-value=0.11 Score=45.38 Aligned_cols=23 Identities=17% Similarity=0.105 Sum_probs=19.7
Q ss_pred cEEEEEEcCCCccHHHHHHHHhc
Q 035574 15 LSVVAILDSIGLDKTAFTAEAYN 37 (156)
Q Consensus 15 ~~vi~I~G~gGvGKTtLa~~vy~ 37 (156)
..-+-++|.+|+|||++|+.+.+
T Consensus 207 ~~~vlL~G~~GtGKT~la~~la~ 229 (758)
T 1r6b_X 207 KNNPLLVGESGVGKTAIAEGLAW 229 (758)
T ss_dssp SCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCCeEEEcCCCCCHHHHHHHHHH
Confidence 34467899999999999999877
No 449
>2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV}
Probab=92.58 E-value=0.075 Score=40.48 Aligned_cols=21 Identities=24% Similarity=0.113 Sum_probs=17.6
Q ss_pred EEEEEcCCCccHHHHHHHHhc
Q 035574 17 VVAILDSIGLDKTAFTAEAYN 37 (156)
Q Consensus 17 vi~I~G~gGvGKTtLa~~vy~ 37 (156)
.|-+.|.||+||||+|..+..
T Consensus 8 ~I~~~~kgGvGKTt~a~~la~ 28 (228)
T 2r8r_A 8 KVFLGAAPGVGKTYAMLQAAH 28 (228)
T ss_dssp EEEEESSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHHH
Confidence 366789999999999887766
No 450
>3zq6_A Putative arsenical pump-driving ATPase; tail-anchored, membrane protein; HET: ADP; 2.11A {Methanothermobacter thermautotrophicusorganism_taxid}
Probab=92.58 E-value=0.19 Score=39.53 Aligned_cols=26 Identities=23% Similarity=0.130 Sum_probs=18.8
Q ss_pred CCC-cEEEEEEcCCCccHHHHHHHHhc
Q 035574 12 PTQ-LSVVAILDSIGLDKTAFTAEAYN 37 (156)
Q Consensus 12 ~~~-~~vi~I~G~gGvGKTtLa~~vy~ 37 (156)
..+ ..++-.-|-||+||||+|..+..
T Consensus 10 ~~gm~~i~v~sgKGGvGKTTvA~~LA~ 36 (324)
T 3zq6_A 10 NKGKTTFVFIGGKGGVGKTTISAATAL 36 (324)
T ss_dssp BTTBCEEEEEEESTTSSHHHHHHHHHH
T ss_pred CCCCeEEEEEeCCCCchHHHHHHHHHH
Confidence 344 34555569999999999887755
No 451
>1wcv_1 SOJ, segregation protein; ATPase, bacterial, chromosome segregation; 1.6A {Thermus thermophilus} PDB: 2bej_A* 2bek_A*
Probab=92.57 E-value=0.059 Score=40.74 Aligned_cols=24 Identities=17% Similarity=0.201 Sum_probs=19.2
Q ss_pred CcEEEEEE-cCCCccHHHHHHHHhc
Q 035574 14 QLSVVAIL-DSIGLDKTAFTAEAYN 37 (156)
Q Consensus 14 ~~~vi~I~-G~gGvGKTtLa~~vy~ 37 (156)
..++|+|+ +-||+||||+|..+..
T Consensus 5 ~~~vI~v~s~kGGvGKTt~a~~LA~ 29 (257)
T 1wcv_1 5 KVRRIALANQKGGVGKTTTAINLAA 29 (257)
T ss_dssp CCCEEEECCSSCCHHHHHHHHHHHH
T ss_pred CCEEEEEEeCCCCchHHHHHHHHHH
Confidence 46789998 6789999998877654
No 452
>1byi_A Dethiobiotin synthase; biotin synthesis, cyclo-ligase, ligase; 0.97A {Escherichia coli} SCOP: c.37.1.10 PDB: 1bs1_A* 1a82_A 1dad_A* 1dae_A* 1daf_A* 1dag_A* 1dah_A* 1dai_A* 1dak_A* 1dam_A* 1dbs_A 1dts_A
Probab=92.55 E-value=0.092 Score=38.46 Aligned_cols=22 Identities=9% Similarity=0.057 Sum_probs=17.4
Q ss_pred EEEEEEcC-CCccHHHHHHHHhc
Q 035574 16 SVVAILDS-IGLDKTAFTAEAYN 37 (156)
Q Consensus 16 ~vi~I~G~-gGvGKTtLa~~vy~ 37 (156)
++|.|.+. ||+||||++..+..
T Consensus 2 k~I~v~s~kgGvGKTt~a~nLa~ 24 (224)
T 1byi_A 2 KRYFVTGTDTEVGKTVASCALLQ 24 (224)
T ss_dssp EEEEEEESSTTSCHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHH
Confidence 57888875 89999998776654
No 453
>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}
Probab=92.54 E-value=0.077 Score=43.42 Aligned_cols=23 Identities=17% Similarity=0.197 Sum_probs=20.5
Q ss_pred cEEEEEEcCCCccHHHHHHHHhc
Q 035574 15 LSVVAILDSIGLDKTAFTAEAYN 37 (156)
Q Consensus 15 ~~vi~I~G~gGvGKTtLa~~vy~ 37 (156)
-.+++|+|..|.|||||.+.+..
T Consensus 47 Ge~~~llGpsGsGKSTLLr~iaG 69 (390)
T 3gd7_A 47 GQRVGLLGRTGSGKSTLLSAFLR 69 (390)
T ss_dssp TCEEEEEESTTSSHHHHHHHHHT
T ss_pred CCEEEEECCCCChHHHHHHHHhC
Confidence 45789999999999999999875
No 454
>3ch4_B Pmkase, phosphomevalonate kinase; parallel beta-sheet with the strand order 23145, walker A motif, cholesterol biosynthesis, lipid synthesis; 1.76A {Homo sapiens}
Probab=92.45 E-value=0.11 Score=38.77 Aligned_cols=25 Identities=12% Similarity=-0.061 Sum_probs=21.5
Q ss_pred CCcEEEEEEcCCCccHHHHHHHHhc
Q 035574 13 TQLSVVAILDSIGLDKTAFTAEAYN 37 (156)
Q Consensus 13 ~~~~vi~I~G~gGvGKTtLa~~vy~ 37 (156)
....+|.|.||.|.||+|.|..+.+
T Consensus 9 ~~~~II~itGk~~SGKd~va~~l~~ 33 (202)
T 3ch4_B 9 APRLVLLFSGKRKSGKDFVTEALQS 33 (202)
T ss_dssp CCSEEEEEEECTTSSHHHHHHHHHH
T ss_pred CCCEEEEEECCCCCChHHHHHHHHH
Confidence 3457999999999999999988755
No 455
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=92.45 E-value=0.11 Score=40.47 Aligned_cols=23 Identities=17% Similarity=0.127 Sum_probs=19.7
Q ss_pred cEEEEEEcCCCccHHHHHHHHhc
Q 035574 15 LSVVAILDSIGLDKTAFTAEAYN 37 (156)
Q Consensus 15 ~~vi~I~G~gGvGKTtLa~~vy~ 37 (156)
..++-+.|.+|+|||++|+.+.+
T Consensus 48 ~~~~L~~G~~G~GKT~la~~la~ 70 (324)
T 3u61_B 48 PHIILHSPSPGTGKTTVAKALCH 70 (324)
T ss_dssp CSEEEECSSTTSSHHHHHHHHHH
T ss_pred CeEEEeeCcCCCCHHHHHHHHHH
Confidence 35667778899999999999987
No 456
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=92.45 E-value=0.081 Score=39.66 Aligned_cols=23 Identities=22% Similarity=0.094 Sum_probs=20.2
Q ss_pred cEEEEEEcCCCccHHHHHHHHhc
Q 035574 15 LSVVAILDSIGLDKTAFTAEAYN 37 (156)
Q Consensus 15 ~~vi~I~G~gGvGKTtLa~~vy~ 37 (156)
-+.+.|.|..|+||||||..+..
T Consensus 34 g~~ilI~GpsGsGKStLA~~La~ 56 (205)
T 2qmh_A 34 GLGVLITGDSGVGKSETALELVQ 56 (205)
T ss_dssp TEEEEEECCCTTTTHHHHHHHHT
T ss_pred CEEEEEECCCCCCHHHHHHHHHH
Confidence 35678999999999999999876
No 457
>1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP hydrolysis, GDP, GMP, dynamin related, large GTPase family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens} SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A* 2bc9_A* 2d4h_A*
Probab=92.40 E-value=0.15 Score=44.01 Aligned_cols=36 Identities=19% Similarity=0.165 Sum_probs=28.9
Q ss_pred HHHHHhcCCCCcEEEEEEcCCCccHHHHHHHHhccc
Q 035574 4 LLDLLIEGPTQLSVVAILDSIGLDKTAFTAEAYNSS 39 (156)
Q Consensus 4 l~~~L~~~~~~~~vi~I~G~gGvGKTtLa~~vy~~~ 39 (156)
.++.|..-.....+|+|+|.+++|||||...+....
T Consensus 27 al~~L~~i~~~~~~VaivG~pnvGKStLiN~L~g~~ 62 (592)
T 1f5n_A 27 ALKILSAITQPMVVVAIVGLYRTGKSYLMNKLAGKK 62 (592)
T ss_dssp HHHHHHTCCSBEEEEEEEEBTTSSHHHHHHHHTTCS
T ss_pred HHHHHHhccCCCcEEEEECCCCCCHHHHHHhHcCCC
Confidence 445555556677899999999999999999998753
No 458
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=92.37 E-value=0.064 Score=44.47 Aligned_cols=21 Identities=19% Similarity=0.453 Sum_probs=19.2
Q ss_pred EEEEcCCCccHHHHHHHHhcc
Q 035574 18 VAILDSIGLDKTAFTAEAYNS 38 (156)
Q Consensus 18 i~I~G~gGvGKTtLa~~vy~~ 38 (156)
++|+|..|+|||||.+.++.-
T Consensus 45 vaLvG~nGaGKSTLln~L~G~ 65 (427)
T 2qag_B 45 ILCVGETGLGKSTLMDTLFNT 65 (427)
T ss_dssp EEEECSTTSSSHHHHHHHHTS
T ss_pred EEEECCCCCCHHHHHHHHhCc
Confidence 899999999999999998763
No 459
>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}
Probab=92.35 E-value=0.063 Score=44.82 Aligned_cols=23 Identities=17% Similarity=0.127 Sum_probs=20.4
Q ss_pred cEEEEEEcCCCccHHHHHHHHhc
Q 035574 15 LSVVAILDSIGLDKTAFTAEAYN 37 (156)
Q Consensus 15 ~~vi~I~G~gGvGKTtLa~~vy~ 37 (156)
-.++.|+|..|.|||||++.+..
T Consensus 138 Ge~v~IvGpnGsGKSTLlr~L~G 160 (460)
T 2npi_A 138 GPRVVIVGGSQTGKTSLSRTLCS 160 (460)
T ss_dssp CCCEEEEESTTSSHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHhC
Confidence 45789999999999999998866
No 460
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=92.35 E-value=0.082 Score=44.95 Aligned_cols=24 Identities=17% Similarity=0.232 Sum_probs=21.6
Q ss_pred CcEEEEEEcCCCccHHHHHHHHhc
Q 035574 14 QLSVVAILDSIGLDKTAFTAEAYN 37 (156)
Q Consensus 14 ~~~vi~I~G~gGvGKTtLa~~vy~ 37 (156)
.-.+++|+|..|.|||||.+.+..
T Consensus 24 ~Gei~gLiGpNGaGKSTLlkiL~G 47 (538)
T 3ozx_A 24 NNTILGVLGKNGVGKTTVLKILAG 47 (538)
T ss_dssp TTEEEEEECCTTSSHHHHHHHHTT
T ss_pred CCCEEEEECCCCCcHHHHHHHHhc
Confidence 457899999999999999999876
No 461
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=92.35 E-value=0.084 Score=41.27 Aligned_cols=23 Identities=9% Similarity=0.180 Sum_probs=20.7
Q ss_pred EEEEEEcCCCccHHHHHHHHhcc
Q 035574 16 SVVAILDSIGLDKTAFTAEAYNS 38 (156)
Q Consensus 16 ~vi~I~G~gGvGKTtLa~~vy~~ 38 (156)
.++.++|..|+|||||.+.+...
T Consensus 170 eiv~l~G~sG~GKSTll~~l~g~ 192 (301)
T 1u0l_A 170 KISTMAGLSGVGKSSLLNAINPG 192 (301)
T ss_dssp SEEEEECSTTSSHHHHHHHHSTT
T ss_pred CeEEEECCCCCcHHHHHHHhccc
Confidence 57899999999999999999763
No 462
>2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A
Probab=92.34 E-value=0.081 Score=42.71 Aligned_cols=26 Identities=12% Similarity=0.149 Sum_probs=21.5
Q ss_pred CcEEEEEEcCCCccHHHHHHHHhccc
Q 035574 14 QLSVVAILDSIGLDKTAFTAEAYNSS 39 (156)
Q Consensus 14 ~~~vi~I~G~gGvGKTtLa~~vy~~~ 39 (156)
+..++.|+|.+|+|||||...+....
T Consensus 178 ~~~~V~lvG~~naGKSTLln~L~~~~ 203 (364)
T 2qtf_A 178 NIPSIGIVGYTNSGKTSLFNSLTGLT 203 (364)
T ss_dssp -CCEEEEECBTTSSHHHHHHHHHCC-
T ss_pred CCcEEEEECCCCCCHHHHHHHHHCCC
Confidence 45679999999999999999987743
No 463
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=92.33 E-value=0.058 Score=42.95 Aligned_cols=22 Identities=18% Similarity=0.261 Sum_probs=20.1
Q ss_pred EEEEEEcCCCccHHHHHHHHhc
Q 035574 16 SVVAILDSIGLDKTAFTAEAYN 37 (156)
Q Consensus 16 ~vi~I~G~gGvGKTtLa~~vy~ 37 (156)
..+.|+|..|.|||||++.+..
T Consensus 172 ~~v~i~G~~GsGKTTll~~l~g 193 (330)
T 2pt7_A 172 KNVIVCGGTGSGKTTYIKSIME 193 (330)
T ss_dssp CCEEEEESTTSCHHHHHHHGGG
T ss_pred CEEEEECCCCCCHHHHHHHHhC
Confidence 4789999999999999999876
No 464
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=92.33 E-value=0.081 Score=44.91 Aligned_cols=23 Identities=26% Similarity=0.394 Sum_probs=21.1
Q ss_pred EEEEEEcCCCccHHHHHHHHhcc
Q 035574 16 SVVAILDSIGLDKTAFTAEAYNS 38 (156)
Q Consensus 16 ~vi~I~G~gGvGKTtLa~~vy~~ 38 (156)
.+++|+|..|.|||||++.++.-
T Consensus 313 e~~~i~G~NGsGKSTLlk~l~Gl 335 (538)
T 1yqt_A 313 EVIGIVGPNGIGKTTFVKMLAGV 335 (538)
T ss_dssp CEEEEECCTTSSHHHHHHHHHTS
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 57899999999999999999874
No 465
>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E*
Probab=92.32 E-value=0.072 Score=44.39 Aligned_cols=23 Identities=13% Similarity=0.229 Sum_probs=20.2
Q ss_pred cEEEEEEcCCCccHHHHHHHHhc
Q 035574 15 LSVVAILDSIGLDKTAFTAEAYN 37 (156)
Q Consensus 15 ~~vi~I~G~gGvGKTtLa~~vy~ 37 (156)
.+-+-++|.+|+||||+|+.+..
T Consensus 50 ~~~iLl~GppGtGKT~lar~lA~ 72 (444)
T 1g41_A 50 PKNILMIGPTGVGKTEIARRLAK 72 (444)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHH
T ss_pred CceEEEEcCCCCCHHHHHHHHHH
Confidence 34578999999999999999987
No 466
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=92.31 E-value=0.091 Score=42.37 Aligned_cols=22 Identities=18% Similarity=0.250 Sum_probs=19.5
Q ss_pred EEEEEEcCCCccHHHHHHHHhc
Q 035574 16 SVVAILDSIGLDKTAFTAEAYN 37 (156)
Q Consensus 16 ~vi~I~G~gGvGKTtLa~~vy~ 37 (156)
.++.|+|..|.|||||.+.+..
T Consensus 124 g~i~I~GptGSGKTTlL~~l~g 145 (356)
T 3jvv_A 124 GLVLVTGPTGSGKSTTLAAMLD 145 (356)
T ss_dssp EEEEEECSTTSCHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHh
Confidence 4899999999999999988754
No 467
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=92.30 E-value=0.078 Score=45.11 Aligned_cols=23 Identities=26% Similarity=0.450 Sum_probs=20.8
Q ss_pred EEEEEEcCCCccHHHHHHHHhcc
Q 035574 16 SVVAILDSIGLDKTAFTAEAYNS 38 (156)
Q Consensus 16 ~vi~I~G~gGvGKTtLa~~vy~~ 38 (156)
.+++|+|..|.|||||++.++.-
T Consensus 295 ei~~i~G~nGsGKSTLl~~l~Gl 317 (538)
T 3ozx_A 295 EIIGILGPNGIGKTTFARILVGE 317 (538)
T ss_dssp CEEEEECCTTSSHHHHHHHHTTS
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 57899999999999999999873
No 468
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=92.25 E-value=0.088 Score=46.20 Aligned_cols=20 Identities=20% Similarity=0.273 Sum_probs=18.3
Q ss_pred EEEEcCCCccHHHHHHHHhc
Q 035574 18 VAILDSIGLDKTAFTAEAYN 37 (156)
Q Consensus 18 i~I~G~gGvGKTtLa~~vy~ 37 (156)
+-++|.+|+|||++|+.+.+
T Consensus 204 vLL~G~pGtGKT~la~~la~ 223 (758)
T 3pxi_A 204 PVLIGEPGVGKTAIAEGLAQ 223 (758)
T ss_dssp EEEESCTTTTTHHHHHHHHH
T ss_pred eEEECCCCCCHHHHHHHHHH
Confidence 56999999999999999877
No 469
>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=92.24 E-value=0.076 Score=43.83 Aligned_cols=21 Identities=14% Similarity=0.385 Sum_probs=19.0
Q ss_pred EEEEcCCCccHHHHHHHHhcc
Q 035574 18 VAILDSIGLDKTAFTAEAYNS 38 (156)
Q Consensus 18 i~I~G~gGvGKTtLa~~vy~~ 38 (156)
|.|+|..|+|||||.+.++..
T Consensus 34 I~lvG~sGaGKSTLln~L~g~ 54 (418)
T 2qag_C 34 LMVVGESGLGKSTLINSLFLT 54 (418)
T ss_dssp EEEECCTTSSHHHHHHHHTTC
T ss_pred EEEECCCCCcHHHHHHHHhCC
Confidence 599999999999999998764
No 470
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=92.22 E-value=0.15 Score=43.62 Aligned_cols=22 Identities=14% Similarity=0.175 Sum_probs=20.5
Q ss_pred EEEEEEcCCCccHHHHHHHHhc
Q 035574 16 SVVAILDSIGLDKTAFTAEAYN 37 (156)
Q Consensus 16 ~vi~I~G~gGvGKTtLa~~vy~ 37 (156)
..+.|+|..|+||||||+.+..
T Consensus 61 ~~vll~Gp~GtGKTtlar~ia~ 82 (604)
T 3k1j_A 61 RHVLLIGEPGTGKSMLGQAMAE 82 (604)
T ss_dssp CCEEEECCTTSSHHHHHHHHHH
T ss_pred CEEEEEeCCCCCHHHHHHHHhc
Confidence 4789999999999999999988
No 471
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=92.20 E-value=0.055 Score=45.40 Aligned_cols=25 Identities=16% Similarity=0.105 Sum_probs=21.4
Q ss_pred CCcEEEEEEcCCCccHHHHHHHHhc
Q 035574 13 TQLSVVAILDSIGLDKTAFTAEAYN 37 (156)
Q Consensus 13 ~~~~vi~I~G~gGvGKTtLa~~vy~ 37 (156)
...+=|=++|.+|.|||.||+.+.+
T Consensus 241 ~pprGILLyGPPGTGKTlLAkAiA~ 265 (467)
T 4b4t_H 241 DPPKGILLYGPPGTGKTLCARAVAN 265 (467)
T ss_dssp CCCSEEEECSCTTSSHHHHHHHHHH
T ss_pred CCCCceEeeCCCCCcHHHHHHHHHh
Confidence 3456677899999999999999988
No 472
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=92.19 E-value=0.086 Score=44.76 Aligned_cols=23 Identities=22% Similarity=0.108 Sum_probs=20.8
Q ss_pred cEEEEEEcCCCccHHHHHHHHhc
Q 035574 15 LSVVAILDSIGLDKTAFTAEAYN 37 (156)
Q Consensus 15 ~~vi~I~G~gGvGKTtLa~~vy~ 37 (156)
-.+++|+|..|.|||||++.+..
T Consensus 47 Ge~~~LvG~NGaGKSTLlk~l~G 69 (538)
T 1yqt_A 47 GMVVGIVGPNGTGKSTAVKILAG 69 (538)
T ss_dssp TSEEEEECCTTSSHHHHHHHHHT
T ss_pred CCEEEEECCCCCCHHHHHHHHhC
Confidence 36899999999999999999876
No 473
>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii}
Probab=92.14 E-value=0.095 Score=41.84 Aligned_cols=26 Identities=12% Similarity=0.176 Sum_probs=22.7
Q ss_pred CCcEEEEEEcCCCccHHHHHHHHhcc
Q 035574 13 TQLSVVAILDSIGLDKTAFTAEAYNS 38 (156)
Q Consensus 13 ~~~~vi~I~G~gGvGKTtLa~~vy~~ 38 (156)
.....+.++|.+|+|||||...+...
T Consensus 165 ~~~~~v~lvG~~gvGKSTLin~L~~~ 190 (357)
T 2e87_A 165 LEIPTVVIAGHPNVGKSTLLKALTTA 190 (357)
T ss_dssp SSSCEEEEECSTTSSHHHHHHHHCSS
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 45678999999999999999998764
No 474
>3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain, PIN-tower interface, coupling hydrolysis to DNA unwinding, ssDNA; 3.30A {Enterobacteria phage T4}
Probab=92.10 E-value=0.17 Score=41.70 Aligned_cols=21 Identities=24% Similarity=0.167 Sum_probs=19.4
Q ss_pred EEEEEcCCCccHHHHHHHHhc
Q 035574 17 VVAILDSIGLDKTAFTAEAYN 37 (156)
Q Consensus 17 vi~I~G~gGvGKTtLa~~vy~ 37 (156)
.+-|.|.+|.|||+++..+..
T Consensus 47 ~~li~G~aGTGKT~ll~~~~~ 67 (459)
T 3upu_A 47 HVTINGPAGTGATTLTKFIIE 67 (459)
T ss_dssp EEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEEeCCCCCHHHHHHHHHH
Confidence 889999999999999998876
No 475
>3iqw_A Tail-anchored protein targeting factor GET3; ATPase, Zn binding, protein transport; HET: ANP; 3.00A {Chaetomium thermophilum} PDB: 3iqx_A* 3ibg_A*
Probab=92.08 E-value=0.24 Score=39.49 Aligned_cols=24 Identities=17% Similarity=0.074 Sum_probs=19.9
Q ss_pred CcEEEEEEcCCCccHHHHHHHHhc
Q 035574 14 QLSVVAILDSIGLDKTAFTAEAYN 37 (156)
Q Consensus 14 ~~~vi~I~G~gGvGKTtLa~~vy~ 37 (156)
..+++-+-|-||+||||+|..+..
T Consensus 15 ~~~i~~~sgkGGvGKTt~a~~lA~ 38 (334)
T 3iqw_A 15 SLRWIFVGGKGGVGKTTTSCSLAI 38 (334)
T ss_dssp TCCEEEEECSTTSSHHHHHHHHHH
T ss_pred CeEEEEEeCCCCccHHHHHHHHHH
Confidence 356777789999999999888765
No 476
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8
Probab=92.07 E-value=0.048 Score=43.24 Aligned_cols=22 Identities=9% Similarity=0.148 Sum_probs=20.4
Q ss_pred EEEEEEcCCCccHHHHHHHHhc
Q 035574 16 SVVAILDSIGLDKTAFTAEAYN 37 (156)
Q Consensus 16 ~vi~I~G~gGvGKTtLa~~vy~ 37 (156)
.++.|+|..|+|||||.+.+..
T Consensus 174 ~~~~lvG~sG~GKSTLln~L~g 195 (307)
T 1t9h_A 174 KTTVFAGQSGVGKSSLLNAISP 195 (307)
T ss_dssp SEEEEEESHHHHHHHHHHHHCC
T ss_pred CEEEEECCCCCCHHHHHHHhcc
Confidence 5889999999999999999976
No 477
>2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C
Probab=92.06 E-value=0.035 Score=39.79 Aligned_cols=23 Identities=17% Similarity=0.202 Sum_probs=4.4
Q ss_pred EEEEEEcCCCccHHHHHHHHhcc
Q 035574 16 SVVAILDSIGLDKTAFTAEAYNS 38 (156)
Q Consensus 16 ~vi~I~G~gGvGKTtLa~~vy~~ 38 (156)
--|.|+|..|+|||||...+..+
T Consensus 21 ~~i~v~G~~~~GKssli~~l~~~ 43 (208)
T 2yc2_C 21 CKVAVVGEATVGKSALISMFTSK 43 (208)
T ss_dssp EEEEEC-----------------
T ss_pred eEEEEECCCCCCHHHHHHHHHhC
Confidence 36788999999999999987765
No 478
>3tmk_A Thymidylate kinase; phosphotransferase; HET: T5A; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 2tmk_A* 1tmk_A*
Probab=92.03 E-value=0.099 Score=39.22 Aligned_cols=23 Identities=17% Similarity=0.006 Sum_probs=20.9
Q ss_pred cEEEEEEcCCCccHHHHHHHHhc
Q 035574 15 LSVVAILDSIGLDKTAFTAEAYN 37 (156)
Q Consensus 15 ~~vi~I~G~gGvGKTtLa~~vy~ 37 (156)
-..|.+.|..|+||||+++.+.+
T Consensus 5 g~~i~~eG~~g~GKst~~~~l~~ 27 (216)
T 3tmk_A 5 GKLILIEGLDRTGKTTQCNILYK 27 (216)
T ss_dssp CCEEEEEECSSSSHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 35789999999999999999988
No 479
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=92.01 E-value=0.077 Score=47.33 Aligned_cols=21 Identities=19% Similarity=0.216 Sum_probs=18.9
Q ss_pred EEEEEcCCCccHHHHHHHHhc
Q 035574 17 VVAILDSIGLDKTAFTAEAYN 37 (156)
Q Consensus 17 vi~I~G~gGvGKTtLa~~vy~ 37 (156)
-+-++|.+|+|||+||+.+.+
T Consensus 193 ~vlL~G~pG~GKT~la~~la~ 213 (854)
T 1qvr_A 193 NPVLIGEPGVGKTAIVEGLAQ 213 (854)
T ss_dssp CCEEEECTTSCHHHHHHHHHH
T ss_pred ceEEEcCCCCCHHHHHHHHHH
Confidence 467899999999999999887
No 480
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=91.97 E-value=0.073 Score=44.29 Aligned_cols=24 Identities=21% Similarity=0.170 Sum_probs=21.1
Q ss_pred CcEEEEEEcCCCccHHHHHHHHhc
Q 035574 14 QLSVVAILDSIGLDKTAFTAEAYN 37 (156)
Q Consensus 14 ~~~vi~I~G~gGvGKTtLa~~vy~ 37 (156)
..+=+=++|.+|.|||.||+.+.+
T Consensus 215 ~prGvLLyGPPGTGKTlLAkAiA~ 238 (437)
T 4b4t_I 215 PPKGVILYGAPGTGKTLLAKAVAN 238 (437)
T ss_dssp CCSEEEEESSTTTTHHHHHHHHHH
T ss_pred CCCCCceECCCCchHHHHHHHHHH
Confidence 346678899999999999999988
No 481
>3pg5_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 3.30A {Corynebacterium diphtheriae}
Probab=91.93 E-value=0.069 Score=42.86 Aligned_cols=23 Identities=13% Similarity=0.385 Sum_probs=18.9
Q ss_pred cEEEEEE-cCCCccHHHHHHHHhc
Q 035574 15 LSVVAIL-DSIGLDKTAFTAEAYN 37 (156)
Q Consensus 15 ~~vi~I~-G~gGvGKTtLa~~vy~ 37 (156)
+++|+|+ +-||+||||+|..+..
T Consensus 1 MkvIav~s~KGGvGKTT~a~nLA~ 24 (361)
T 3pg5_A 1 MRTISFFNNKGGVGKTTLSTNVAH 24 (361)
T ss_dssp CEEEEBCCSSCCHHHHHHHHHHHH
T ss_pred CeEEEEEcCCCCCcHHHHHHHHHH
Confidence 3678887 6799999999888765
No 482
>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}
Probab=91.86 E-value=0.16 Score=42.11 Aligned_cols=25 Identities=8% Similarity=0.116 Sum_probs=21.5
Q ss_pred CcEEEEEEcCCCccHHHHHHHHhcc
Q 035574 14 QLSVVAILDSIGLDKTAFTAEAYNS 38 (156)
Q Consensus 14 ~~~vi~I~G~gGvGKTtLa~~vy~~ 38 (156)
.-..++|+|..|.|||||.+.+...
T Consensus 156 ~Gq~~~IvG~sGsGKSTLl~~Iag~ 180 (438)
T 2dpy_A 156 RGQRMGLFAGSGVGKSVLLGMMARY 180 (438)
T ss_dssp TTCEEEEEECTTSSHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcc
Confidence 3467899999999999999998763
No 483
>1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2
Probab=91.81 E-value=0.13 Score=42.07 Aligned_cols=24 Identities=17% Similarity=0.109 Sum_probs=21.4
Q ss_pred cEEEEEEcCCCccHHHHHHHHhcc
Q 035574 15 LSVVAILDSIGLDKTAFTAEAYNS 38 (156)
Q Consensus 15 ~~vi~I~G~gGvGKTtLa~~vy~~ 38 (156)
-..++|+|.+|+|||||.+.+...
T Consensus 20 g~~vgiVG~pnaGKSTL~n~Ltg~ 43 (392)
T 1ni3_A 20 NLKTGIVGMPNVGKSTFFRAITKS 43 (392)
T ss_dssp CCEEEEEECSSSSHHHHHHHHHHS
T ss_pred CCEEEEECCCCCCHHHHHHHHHCC
Confidence 457899999999999999999874
No 484
>3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens}
Probab=91.78 E-value=0.3 Score=36.30 Aligned_cols=20 Identities=35% Similarity=0.321 Sum_probs=16.6
Q ss_pred EEEEEEcCCCccHHHHHHHH
Q 035574 16 SVVAILDSIGLDKTAFTAEA 35 (156)
Q Consensus 16 ~vi~I~G~gGvGKTtLa~~v 35 (156)
+.+.++|..|.||||+....
T Consensus 77 ~~~~i~g~TGsGKTt~~~~~ 96 (235)
T 3llm_A 77 SVVIIRGATGCGKTTQVPQF 96 (235)
T ss_dssp SEEEEECCTTSSHHHHHHHH
T ss_pred CEEEEEeCCCCCcHHhHHHH
Confidence 57899999999999866544
No 485
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*
Probab=91.75 E-value=0.14 Score=35.82 Aligned_cols=23 Identities=13% Similarity=0.138 Sum_probs=19.5
Q ss_pred cEEEEEEcCCCccHHHHHHHHhc
Q 035574 15 LSVVAILDSIGLDKTAFTAEAYN 37 (156)
Q Consensus 15 ~~vi~I~G~gGvGKTtLa~~vy~ 37 (156)
..+..|+|..|.|||||...++-
T Consensus 23 ~g~~~I~G~NGsGKStil~Ai~~ 45 (149)
T 1f2t_A 23 EGINLIIGQNGSGKSSLLDAILV 45 (149)
T ss_dssp SEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHHH
Confidence 35778999999999999888753
No 486
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=91.74 E-value=0.11 Score=37.68 Aligned_cols=22 Identities=14% Similarity=-0.008 Sum_probs=17.8
Q ss_pred EEEEEEcCCCccHHHHHHHHhc
Q 035574 16 SVVAILDSIGLDKTAFTAEAYN 37 (156)
Q Consensus 16 ~vi~I~G~gGvGKTtLa~~vy~ 37 (156)
.++-++|..|.||||++..+..
T Consensus 4 ~i~vi~G~~gsGKTT~ll~~~~ 25 (184)
T 2orw_A 4 KLTVITGPMYSGKTTELLSFVE 25 (184)
T ss_dssp CEEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHH
Confidence 4677999999999999865543
No 487
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=91.73 E-value=0.1 Score=45.01 Aligned_cols=24 Identities=25% Similarity=0.317 Sum_probs=21.3
Q ss_pred cEEEEEEcCCCccHHHHHHHHhcc
Q 035574 15 LSVVAILDSIGLDKTAFTAEAYNS 38 (156)
Q Consensus 15 ~~vi~I~G~gGvGKTtLa~~vy~~ 38 (156)
-.+++|+|..|.|||||.+.+..-
T Consensus 382 Gei~~i~G~NGsGKSTLlk~l~Gl 405 (607)
T 3bk7_A 382 GEVIGIVGPNGIGKTTFVKMLAGV 405 (607)
T ss_dssp TCEEEEECCTTSSHHHHHHHHHTS
T ss_pred CCEEEEECCCCCCHHHHHHHHhcC
Confidence 357899999999999999999873
No 488
>4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon cuniculi}
Probab=91.68 E-value=0.042 Score=40.01 Aligned_cols=23 Identities=13% Similarity=0.322 Sum_probs=19.5
Q ss_pred cEEEEEEcCCCccHHHHHHHHhc
Q 035574 15 LSVVAILDSIGLDKTAFTAEAYN 37 (156)
Q Consensus 15 ~~vi~I~G~gGvGKTtLa~~vy~ 37 (156)
.--|.|+|..|+|||||...+.+
T Consensus 11 ~~ki~vvG~~~~GKSsli~~l~~ 33 (218)
T 4djt_A 11 TYKICLIGDGGVGKTTYINRVLD 33 (218)
T ss_dssp EEEEEEECCTTSSHHHHHCBCTT
T ss_pred ccEEEEECCCCCCHHHHHHHHhc
Confidence 34578999999999999998774
No 489
>2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=91.67 E-value=0.083 Score=42.48 Aligned_cols=22 Identities=14% Similarity=0.368 Sum_probs=19.1
Q ss_pred EEEEEcCCCccHHHHHHHHhcc
Q 035574 17 VVAILDSIGLDKTAFTAEAYNS 38 (156)
Q Consensus 17 vi~I~G~gGvGKTtLa~~vy~~ 38 (156)
-|.|+|..|+|||||...++..
T Consensus 39 ~I~vvG~~g~GKSTLln~L~~~ 60 (361)
T 2qag_A 39 TLMVVGESGLGKSTLINSLFLT 60 (361)
T ss_dssp CEEECCCTTSCHHHHHHHHTTC
T ss_pred EEEEEcCCCCCHHHHHHHHhCC
Confidence 3689999999999999998763
No 490
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=91.63 E-value=0.11 Score=44.95 Aligned_cols=23 Identities=13% Similarity=0.234 Sum_probs=20.8
Q ss_pred EEEEEEcCCCccHHHHHHHHhcc
Q 035574 16 SVVAILDSIGLDKTAFTAEAYNS 38 (156)
Q Consensus 16 ~vi~I~G~gGvGKTtLa~~vy~~ 38 (156)
.+++|+|..|.|||||++.+..-
T Consensus 379 Eiv~iiG~NGsGKSTLlk~l~Gl 401 (608)
T 3j16_B 379 EILVMMGENGTGKTTLIKLLAGA 401 (608)
T ss_dssp CEEEEESCTTSSHHHHHHHHHTS
T ss_pred eEEEEECCCCCcHHHHHHHHhcC
Confidence 57899999999999999999763
No 491
>2ph1_A Nucleotide-binding protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; 2.70A {Archaeoglobus fulgidus dsm 4304} PDB: 3kb1_A*
Probab=91.63 E-value=0.12 Score=39.28 Aligned_cols=22 Identities=27% Similarity=0.271 Sum_probs=17.4
Q ss_pred cEEEEEE-cCCCccHHHHHHHHh
Q 035574 15 LSVVAIL-DSIGLDKTAFTAEAY 36 (156)
Q Consensus 15 ~~vi~I~-G~gGvGKTtLa~~vy 36 (156)
.++|.|. +-||+||||+|..+.
T Consensus 18 ~~vI~v~s~kGGvGKTT~a~nLA 40 (262)
T 2ph1_A 18 KSRIAVMSGKGGVGKSTVTALLA 40 (262)
T ss_dssp SCEEEEECSSSCTTHHHHHHHHH
T ss_pred CeEEEEEcCCCCCCHHHHHHHHH
Confidence 5688887 668999999877664
No 492
>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A*
Probab=91.61 E-value=0.11 Score=43.69 Aligned_cols=22 Identities=18% Similarity=0.108 Sum_probs=20.4
Q ss_pred EEEEEEcCCCccHHHHHHHHhc
Q 035574 16 SVVAILDSIGLDKTAFTAEAYN 37 (156)
Q Consensus 16 ~vi~I~G~gGvGKTtLa~~vy~ 37 (156)
.+++|+|..|.|||||.+.+..
T Consensus 30 e~~~liG~nGsGKSTLl~~l~G 51 (483)
T 3euj_A 30 LVTTLSGGNGAGKSTTMAGFVT 51 (483)
T ss_dssp SEEEEECCTTSSHHHHHHHHHH
T ss_pred ceEEEECCCCCcHHHHHHHHhc
Confidence 7899999999999999998875
No 493
>1p6x_A Thymidine kinase; P-loop, LID, transferase; HET: THM; 2.00A {Equid herpesvirus 4} SCOP: c.37.1.1 PDB: 1p72_A* 1p73_A* 1p75_A*
Probab=91.59 E-value=0.13 Score=41.21 Aligned_cols=23 Identities=9% Similarity=0.073 Sum_probs=21.0
Q ss_pred cEEEEEEcCCCccHHHHHHHHhc
Q 035574 15 LSVVAILDSIGLDKTAFTAEAYN 37 (156)
Q Consensus 15 ~~vi~I~G~gGvGKTtLa~~vy~ 37 (156)
...|+|-|.-|+||||+++.+.+
T Consensus 7 ~~fI~~EG~dGaGKTT~~~~La~ 29 (334)
T 1p6x_A 7 IVRIYLDGVYGIGKSTTGRVMAS 29 (334)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHS
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 46789999999999999999988
No 494
>2xj4_A MIPZ; replication, cell division, ATPase, WACA; 1.60A {Caulobacter vibrioides} PDB: 2xj9_A* 2xit_A
Probab=91.48 E-value=0.12 Score=39.88 Aligned_cols=22 Identities=14% Similarity=0.222 Sum_probs=17.8
Q ss_pred EEEEEE-cCCCccHHHHHHHHhc
Q 035574 16 SVVAIL-DSIGLDKTAFTAEAYN 37 (156)
Q Consensus 16 ~vi~I~-G~gGvGKTtLa~~vy~ 37 (156)
++|+|+ +-||+||||+|..+..
T Consensus 5 kvI~v~s~KGGvGKTT~a~nLA~ 27 (286)
T 2xj4_A 5 RVIVVGNEKGGAGKSTIAVHLVT 27 (286)
T ss_dssp EEEEECCSSSCTTHHHHHHHHHH
T ss_pred eEEEEEcCCCCCCHHHHHHHHHH
Confidence 578887 5689999999887754
No 495
>1dek_A Deoxynucleoside monophosphate kinase; transferase, phosphotransferase; HET: DGP; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1 PDB: 1del_A*
Probab=91.45 E-value=0.14 Score=39.13 Aligned_cols=22 Identities=5% Similarity=-0.068 Sum_probs=19.8
Q ss_pred EEEEEEcCCCccHHHHHHHHhc
Q 035574 16 SVVAILDSIGLDKTAFTAEAYN 37 (156)
Q Consensus 16 ~vi~I~G~gGvGKTtLa~~vy~ 37 (156)
.+|+|.|+.|.||||+|+.+..
T Consensus 2 ~~i~ltG~~~sGK~tv~~~l~~ 23 (241)
T 1dek_A 2 KLIFLSGVKRSGKDTTADFIMS 23 (241)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 5799999999999999998855
No 496
>3hdt_A Putative kinase; structura genomics, PSI-2, protein structure initiative, midwest CENT structural genomics, MCSG; 2.79A {Clostridium symbiosum atcc 14940}
Probab=91.45 E-value=0.14 Score=38.57 Aligned_cols=23 Identities=9% Similarity=0.030 Sum_probs=20.4
Q ss_pred cEEEEEEcCCCccHHHHHHHHhc
Q 035574 15 LSVVAILDSIGLDKTAFTAEAYN 37 (156)
Q Consensus 15 ~~vi~I~G~gGvGKTtLa~~vy~ 37 (156)
..+|+|-|+.|.||||+|+.+..
T Consensus 14 ~~iI~i~g~~gsGk~~i~~~la~ 36 (223)
T 3hdt_A 14 NLIITIEREYGSGGRIVGKKLAE 36 (223)
T ss_dssp CEEEEEEECTTSCHHHHHHHHHH
T ss_pred CeEEEEeCCCCCCHHHHHHHHHH
Confidence 46899999999999999998765
No 497
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=91.44 E-value=0.18 Score=41.33 Aligned_cols=26 Identities=19% Similarity=0.201 Sum_probs=22.1
Q ss_pred CcEEEEEEcCCCccHHHHHHHHhccc
Q 035574 14 QLSVVAILDSIGLDKTAFTAEAYNSS 39 (156)
Q Consensus 14 ~~~vi~I~G~gGvGKTtLa~~vy~~~ 39 (156)
....+.|+|.+|+|||||...+....
T Consensus 179 ~~~kvaivG~~gvGKSTLln~l~g~~ 204 (439)
T 1mky_A 179 DAIKVAIVGRPNVGKSTLFNAILNKE 204 (439)
T ss_dssp SCEEEEEECSTTSSHHHHHHHHHTST
T ss_pred cCceEEEECCCCCCHHHHHHHHhCCc
Confidence 34578999999999999999997753
No 498
>3th5_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTPase, GTP binding, protein binding, signali protein; HET: GNP; 2.30A {Homo sapiens}
Probab=90.76 E-value=0.036 Score=40.02 Aligned_cols=24 Identities=8% Similarity=0.036 Sum_probs=19.5
Q ss_pred cEEEEEEcCCCccHHHHHHHHhcc
Q 035574 15 LSVVAILDSIGLDKTAFTAEAYNS 38 (156)
Q Consensus 15 ~~vi~I~G~gGvGKTtLa~~vy~~ 38 (156)
.--|.++|.+|+|||||...+.++
T Consensus 30 ~~ki~v~G~~~~GKSsli~~l~~~ 53 (204)
T 3th5_A 30 AIKCVVVGDGAVGKTCLLISYTTN 53 (204)
Confidence 345788999999999999877653
No 499
>1g8f_A Sulfate adenylyltransferase; alpha-beta protein, beta-barrel, rossmann-fold, kinase fold; 1.95A {Saccharomyces cerevisiae} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1g8g_A* 1g8h_A* 1j70_A 1jec_A 1jed_A* 1jee_A*
Probab=91.42 E-value=0.11 Score=44.12 Aligned_cols=24 Identities=8% Similarity=0.131 Sum_probs=21.4
Q ss_pred CcEEEEEEcCCCccHHHHHHHHhc
Q 035574 14 QLSVVAILDSIGLDKTAFTAEAYN 37 (156)
Q Consensus 14 ~~~vi~I~G~gGvGKTtLa~~vy~ 37 (156)
...+|-+.|+.|.||||+|+.+..
T Consensus 394 ~~~~I~l~GlsGsGKSTIa~~La~ 417 (511)
T 1g8f_A 394 QGFSIVLGNSLTVSREQLSIALLS 417 (511)
T ss_dssp CCEEEEECTTCCSCHHHHHHHHHH
T ss_pred cceEEEecccCCCCHHHHHHHHHH
Confidence 346888999999999999999988
No 500
>1jwy_B Dynamin A GTPase domain; dynamin, GTPase, GDP, myosin, fusion-protein, hydrolase; HET: BGC ADP GDP; 2.30A {Dictyostelium discoideum} SCOP: c.37.1.8 PDB: 1jx2_B*
Probab=91.40 E-value=0.13 Score=39.79 Aligned_cols=27 Identities=11% Similarity=0.171 Sum_probs=22.9
Q ss_pred CCcEEEEEEcCCCccHHHHHHHHhccc
Q 035574 13 TQLSVVAILDSIGLDKTAFTAEAYNSS 39 (156)
Q Consensus 13 ~~~~vi~I~G~gGvGKTtLa~~vy~~~ 39 (156)
.....|.|+|..|+|||||...+....
T Consensus 22 ~~~~~I~vvG~~~~GKSTlln~l~g~~ 48 (315)
T 1jwy_B 22 LDLPQIVVVGSQSSGKSSVLENIVGRD 48 (315)
T ss_dssp TCCCEEEEEECSSSSHHHHHHHHHTSC
T ss_pred CCCCeEEEEcCCCCCHHHHHHHHHCCC
Confidence 456789999999999999999987643
Done!