Query 035575
Match_columns 132
No_of_seqs 105 out of 220
Neff 6.4
Searched_HMMs 29240
Date Mon Mar 25 06:26:34 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/035575.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/035575hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1zl8_A LIN-7; heterodimer, alp 73.5 8.1 0.00028 23.0 4.7 35 10-44 14-48 (53)
2 3u5c_Z RP45, S31, YS23, 40S ri 60.9 12 0.00042 25.4 4.3 59 5-64 44-103 (108)
3 1v90_A Delta-paluit1, delta-pa 60.6 2.3 7.9E-05 23.7 0.5 17 72-89 14-30 (38)
4 2htj_A P fimbrial regulatory p 54.1 30 0.001 20.9 5.0 56 9-65 3-60 (81)
5 1dgn_A Iceberg (protease inhib 53.9 26 0.00089 22.4 4.9 44 3-46 16-59 (89)
6 1qbj_A Protein (double-strande 53.3 39 0.0013 21.2 6.5 63 1-66 5-71 (81)
7 1eit_A MU-agatoxin-I, MU-AGA-I 51.7 2.1 7.1E-05 23.8 -0.7 12 78-89 18-29 (37)
8 1kqh_A ACTX-HI:OB4219; funnel 49.2 3.8 0.00013 22.9 0.1 16 73-89 15-30 (38)
9 3iz6_V 40S ribosomal protein S 49.1 13 0.00045 25.3 2.9 57 6-63 46-103 (108)
10 1xn7_A Hypothetical protein YH 46.1 28 0.00097 21.7 4.0 46 7-52 3-49 (78)
11 2k02_A Ferrous iron transport 45.5 27 0.00092 22.5 3.9 46 8-53 4-50 (87)
12 4ham_A LMO2241 protein; struct 41.4 49 0.0017 22.1 4.9 55 4-64 16-79 (134)
13 2xzm_8 RPS25E,; ribosome, tran 40.5 23 0.00078 25.2 3.1 60 6-66 48-109 (143)
14 3eyy_A Putative iron uptake re 40.3 85 0.0029 21.3 7.5 54 11-65 24-83 (145)
15 2ek5_A Predicted transcription 39.1 85 0.0029 21.0 6.0 47 3-52 5-60 (129)
16 2p1h_A APAF-1, apoptotic prote 37.9 56 0.0019 20.4 4.5 38 8-46 24-61 (94)
17 3by6_A Predicted transcription 32.5 1.1E+02 0.0037 20.3 5.6 50 3-52 12-67 (126)
18 3tqn_A Transcriptional regulat 31.0 1.1E+02 0.0037 19.7 5.6 48 4-52 11-65 (113)
19 2cmx_A ORF F-112, F112, hypoth 30.6 44 0.0015 22.6 3.1 42 5-46 14-58 (118)
20 2heo_A Z-DNA binding protein 1 29.2 69 0.0024 18.9 3.6 43 7-49 11-54 (67)
21 1hw1_A FADR, fatty acid metabo 29.1 1.5E+02 0.0051 21.2 6.2 55 4-64 9-72 (239)
22 2nz7_A NOD1, caspase recruitme 28.9 78 0.0027 20.6 4.1 39 7-46 28-66 (98)
23 1go3_F DNA-directed RNA polyme 27.5 97 0.0033 20.4 4.5 39 8-47 52-90 (107)
24 1nvp_D Transcription initiatio 27.3 1.3E+02 0.0043 20.2 5.0 36 8-43 14-49 (108)
25 3edp_A LIN2111 protein; APC883 25.8 1.6E+02 0.0054 21.5 5.9 46 4-52 11-66 (236)
26 2dk5_A DNA-directed RNA polyme 25.0 1.3E+02 0.0044 19.0 4.6 54 11-64 25-82 (91)
27 3bwg_A Uncharacterized HTH-typ 24.2 1.3E+02 0.0044 22.0 5.1 46 4-52 7-62 (239)
28 2b0l_A GTP-sensing transcripti 23.7 58 0.002 21.0 2.7 36 27-64 47-86 (102)
29 1nh2_D Transcription initiatio 23.2 1.6E+02 0.0055 20.1 5.0 35 8-42 18-52 (121)
30 3ihu_A Transcriptional regulat 23.0 1.9E+02 0.0064 20.5 5.7 48 3-53 17-72 (222)
31 3eet_A Putative GNTR-family tr 22.2 2.5E+02 0.0085 21.0 6.7 46 4-52 31-86 (272)
32 2wv0_A YVOA, HTH-type transcri 21.3 2.4E+02 0.0083 20.5 6.6 45 4-51 12-66 (243)
33 3neu_A LIN1836 protein; struct 20.3 1.9E+02 0.0065 18.9 6.4 50 3-52 14-69 (125)
34 2di3_A Bacterial regulatory pr 20.0 63 0.0022 23.4 2.6 47 3-52 5-60 (239)
No 1
>1zl8_A LIN-7; heterodimer, alpha helix, scaffold, assembly, specifici signaling, protein binding; NMR {Caenorhabditis elegans} SCOP: a.194.1.1
Probab=73.51 E-value=8.1 Score=22.97 Aligned_cols=35 Identities=20% Similarity=0.270 Sum_probs=30.6
Q ss_pred HHHHHHHhcCCCCHHHHHHHHHhhChhHHHHHHHH
Q 035575 10 SVWKSIESTRSVTEDQLSILHFLFGKNIERATRIV 44 (132)
Q Consensus 10 ~~~~~i~~~~~ltd~~l~~L~~lf~~~l~~Al~ll 44 (132)
+++..+..++++++.-|.+|..+..+.+-.|.+-+
T Consensus 14 ELle~lq~sgevp~~KL~aLq~VLqSdF~~aVREV 48 (53)
T 1zl8_A 14 ELMEHVQKTGEVNNAKLASLQQVLQSEFFGAVREV 48 (53)
T ss_dssp HHHHHHGGGSSSTHHHHHHHHHHHSCSHHHHHHHH
T ss_pred HHHHHHHHcCCCCcHHHHHHHHHHHHHHHHHHHHH
Confidence 67777888999999999999999999998887654
No 2
>3u5c_Z RP45, S31, YS23, 40S ribosomal protein S25-A; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3izb_V 3o30_Q 3o2z_Q 3u5g_Z
Probab=60.90 E-value=12 Score=25.42 Aligned_cols=59 Identities=19% Similarity=0.153 Sum_probs=43.7
Q ss_pred HHHHHHHHHHHHhcCCCCHHHHHHHHHhhChhHHHHHHHHhcC-CeEEEeeCCCcceEEEE
Q 035575 5 SLVAESVWKSIESTRSVTEDQLSILHFLFGKNIERATRIVDQR-GVRRISGEPSGRSIFKV 64 (132)
Q Consensus 5 ~~v~~~~~~~i~~~~~ltd~~l~~L~~lf~~~l~~Al~lld~~-~V~~~~~~~s~r~~y~V 64 (132)
....|.|.+++..-+-+|+-.+..=..|=|+...+||+-+.+. -|+.+. ..+.-.+|.-
T Consensus 44 k~t~dkl~KEVpk~KlITpsvlseRlkI~gSLAR~aLreL~~kGlIk~V~-kh~~q~IYTr 103 (108)
T 3u5c_Z 44 QEKYDRILKEVPTYRYVSVSVLVDRLKIGGSLARIALRHLEKEGIIKPIS-KHSKQAIYTR 103 (108)
T ss_dssp THHHHHHHHHCSSCSSBSHHHHHHTTCCCTTHHHHHHHHHSSSSSCEEEE-CCSSCCEEEC
T ss_pred HHHHHHHHHHccCCeEEeHHHhhhhhhhhHHHHHHHHHHHHHCCCEEEEe-cCCCEEEEec
Confidence 3567888888888889999999887788888889998777664 555554 5554556653
No 3
>1v90_A Delta-paluit1, delta-palutoxin IT1; insecticidal toxin, spider toxin, ICK fold, structure; NMR {Paracoelotes luctuosus} PDB: 1v91_A
Probab=60.61 E-value=2.3 Score=23.73 Aligned_cols=17 Identities=35% Similarity=0.794 Sum_probs=12.8
Q ss_pred ceeEEccCCCccCccchh
Q 035575 72 EEYLCFAENYCACYSFFY 89 (132)
Q Consensus 72 ~~Y~v~~~~~CsC~~F~~ 89 (132)
..|-+ .+.||||++|-+
T Consensus 14 gp~CC-~gyyCsCr~~p~ 30 (38)
T 1v90_A 14 GPSCC-DGFYCSCRSMPY 30 (38)
T ss_dssp CSCCC-TTBCCCCSSSSC
T ss_pred CCccc-CCceEccCCCCc
Confidence 34555 689999998874
No 4
>2htj_A P fimbrial regulatory protein KS71A; winged helix-turn-helix, PAP PILI, transcription activator; NMR {Escherichia coli} SCOP: a.4.5.73
Probab=54.08 E-value=30 Score=20.94 Aligned_cols=56 Identities=5% Similarity=0.008 Sum_probs=34.5
Q ss_pred HHHHHHHHhcCCCCHHHHHHHHHhhChhHHHHHHHH-hcCCeEEEeeCCCcc-eEEEEe
Q 035575 9 ESVWKSIESTRSVTEDQLSILHFLFGKNIERATRIV-DQRGVRRISGEPSGR-SIFKVV 65 (132)
Q Consensus 9 ~~~~~~i~~~~~ltd~~l~~L~~lf~~~l~~Al~ll-d~~~V~~~~~~~s~r-~~y~V~ 65 (132)
+.+++.+.+.+.+|...+.....+=.+++.+.++.+ +.|-|.+.. ...|+ .+|.+.
T Consensus 3 ~~Il~~L~~~~~~s~~eLa~~lgvs~~tv~r~L~~L~~~GlI~~~~-~~~gr~~~y~l~ 60 (81)
T 2htj_A 3 NEILEFLNRHNGGKTAEIAEALAVTDYQARYYLLLLEKAGMVQRSP-LRRGMATYWFLK 60 (81)
T ss_dssp HHHHHHHHHSCCCCHHHHHHHHTSCHHHHHHHHHHHHHHTSEEEEC-CSSSSSCEEEES
T ss_pred HHHHHHHHHcCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEEec-cCCCCcEEEEEC
Confidence 466777776677787777666666557788887655 557676553 23333 344443
No 5
>1dgn_A Iceberg (protease inhibitor); antiparallel six-helix bundle, greek-KEY, hydrolase inhibitor; NMR {Homo sapiens} SCOP: a.77.1.3
Probab=53.90 E-value=26 Score=22.42 Aligned_cols=44 Identities=5% Similarity=0.141 Sum_probs=34.8
Q ss_pred hhHHHHHHHHHHHHhcCCCCHHHHHHHHHhhChhHHHHHHHHhc
Q 035575 3 ASSLVAESVWKSIESTRSVTEDQLSILHFLFGKNIERATRIVDQ 46 (132)
Q Consensus 3 ~~~~v~~~~~~~i~~~~~ltd~~l~~L~~lf~~~l~~Al~lld~ 46 (132)
+.+.+.+.+++.+.+.+-|+++-...+..-=..+-.+|..|+|.
T Consensus 16 ~~~~~i~~lLD~Ll~~~VLn~~E~e~i~~~~~t~~dkar~LiD~ 59 (89)
T 1dgn_A 16 VGAGTINALLDCLLEDEVISQEDMNKVRDENDTVMDKARVLIDL 59 (89)
T ss_dssp CCHHHHHHHHHHHHHHTCSCHHHHHHHHTCCSSHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHCcccHHHHHHHHhccCchHHHHHHHHHH
Confidence 45688899999999999999998888866334447888888875
No 6
>1qbj_A Protein (double-stranded RNA specific adenosine D (ADAR1)); protein-Z-DNA complex, hydrolase-DNA complex; HET: DNA; 2.10A {Homo sapiens} SCOP: a.4.5.19 PDB: 3f21_A* 3f22_A* 3f23_A* 3irr_A* 3irq_D* 2gxb_A 2acj_A 2l54_A
Probab=53.30 E-value=39 Score=21.19 Aligned_cols=63 Identities=17% Similarity=0.141 Sum_probs=39.0
Q ss_pred CchhHHHHHHHHHHHHhcC---CCCHHHHHHHHHhhChhHHHHHHHH-hcCCeEEEeeCCCcceEEEEec
Q 035575 1 MSASSLVAESVWKSIESTR---SVTEDQLSILHFLFGKNIERATRIV-DQRGVRRISGEPSGRSIFKVVG 66 (132)
Q Consensus 1 ~~~~~~v~~~~~~~i~~~~---~ltd~~l~~L~~lf~~~l~~Al~ll-d~~~V~~~~~~~s~r~~y~V~g 66 (132)
|++...+-.+|++.|.+.+ .+|-..+..-..+=-.++.++|.-+ ++|.|.+... ....|.+..
T Consensus 5 ~s~~~~~~~~IL~~L~~~~pg~~~t~~eLA~~Lgvsr~tV~~~L~~Le~~G~I~~~g~---~~~~W~i~~ 71 (81)
T 1qbj_A 5 LSIYQDQEQRILKFLEELGEGKATTAHDLSGKLGTPKKEINRVLYSLAKKGKLQKEAG---TPPLWKIAV 71 (81)
T ss_dssp -CHHHHHHHHHHHHHHHHCTTCCBCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEESS---SSCEEEEC-
T ss_pred cccchHHHHHHHHHHHHcCCCCCcCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEecCC---CCCeeEEeC
Confidence 5666677788888888877 7775555444333335678887666 5577766532 235666653
No 7
>1eit_A MU-agatoxin-I, MU-AGA-I; neurotoxin, excitatory insect toxin; NMR {Agelenopsis aperta} SCOP: g.3.6.2
Probab=51.67 E-value=2.1 Score=23.80 Aligned_cols=12 Identities=25% Similarity=0.465 Sum_probs=10.1
Q ss_pred cCCCccCccchh
Q 035575 78 AENYCACYSFFY 89 (132)
Q Consensus 78 ~~~~CsC~~F~~ 89 (132)
.+.||||++|-+
T Consensus 18 ~gyyCsCr~~p~ 29 (37)
T 1eit_A 18 EGFYCSCRQPPK 29 (37)
T ss_dssp TTEEEEEEETTE
T ss_pred CceeEccCCCCc
Confidence 588999998874
No 8
>1kqh_A ACTX-HI:OB4219; funnel WEB, spider venom, CIS-trans isomerisation, disulfide rich, cystine knot, solution structure, spectroscopy, toxin; NMR {Hadronyche infensa} SCOP: g.3.6.2 PDB: 1kqi_A
Probab=49.21 E-value=3.8 Score=22.87 Aligned_cols=16 Identities=25% Similarity=0.793 Sum_probs=12.0
Q ss_pred eeEEccCCCccCccchh
Q 035575 73 EYLCFAENYCACYSFFY 89 (132)
Q Consensus 73 ~Y~v~~~~~CsC~~F~~ 89 (132)
.|=+ .+.||||++|-+
T Consensus 15 p~CC-~g~yCsC~~~p~ 30 (38)
T 1kqh_A 15 DSCC-KPYLCSCIFFYP 30 (38)
T ss_dssp CCBC-TTCEEECCSSSS
T ss_pred Cccc-CCeeEccCCCCc
Confidence 4445 688999998864
No 9
>3iz6_V 40S ribosomal protein S25 (S25E); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=49.15 E-value=13 Score=25.26 Aligned_cols=57 Identities=16% Similarity=0.205 Sum_probs=43.8
Q ss_pred HHHHHHHHHHHhcCCCCHHHHHHHHHhhChhHHHHHHHHh-cCCeEEEeeCCCcceEEE
Q 035575 6 LVAESVWKSIESTRSVTEDQLSILHFLFGKNIERATRIVD-QRGVRRISGEPSGRSIFK 63 (132)
Q Consensus 6 ~v~~~~~~~i~~~~~ltd~~l~~L~~lf~~~l~~Al~lld-~~~V~~~~~~~s~r~~y~ 63 (132)
...|.|.+++..-+-+|+-.+..=..|=|+...+||+-+. +|-|+.+. ..+.-.+|.
T Consensus 46 ~t~dkl~KEVpk~KlITpsvlseRlkI~gSLAR~aLreL~~kGlIk~V~-kh~~q~IYT 103 (108)
T 3iz6_V 46 ATYDKLLSEVPKYKQITPSVLSERLRINGSLARQAIKDLESRGAIRVVS-VHSSQLIYT 103 (108)
T ss_dssp HHHHHHHHHHHHHSSEEEHHHHHHHHTCCHHHHHHHHHHHHHHTSCEEC-CCTTSCCEE
T ss_pred HHHHHHHHHccCCeEEeHHHHHhhhcccHHHHHHHHHHHHHCCCEEEEe-cCCCEEEEe
Confidence 4578899999999999999999888899998899976555 57777774 444445665
No 10
>1xn7_A Hypothetical protein YHGG; alpha+beta, GFT structural genomics, protein structure initiative, PSI, NESG; NMR {Escherichia coli} SCOP: a.4.5.62
Probab=46.07 E-value=28 Score=21.75 Aligned_cols=46 Identities=13% Similarity=-0.021 Sum_probs=31.2
Q ss_pred HHHHHHHHHHhcCCCCHHHHHHHHHhhChhHHHHHHHHh-cCCeEEE
Q 035575 7 VAESVWKSIESTRSVTEDQLSILHFLFGKNIERATRIVD-QRGVRRI 52 (132)
Q Consensus 7 v~~~~~~~i~~~~~ltd~~l~~L~~lf~~~l~~Al~lld-~~~V~~~ 52 (132)
..++|++.|++.+.++-..|.....+=+.++.+-|+.++ +|.|.++
T Consensus 3 ~L~~Il~~L~~~g~vsv~eLa~~l~VS~~TIRrdL~~Le~~G~l~R~ 49 (78)
T 1xn7_A 3 SLIQVRDLLALRGRMEAAQISQTLNTPQPMINAMLQQLESMGKAVRI 49 (78)
T ss_dssp CHHHHHHHHHHSCSBCHHHHHHHTTCCHHHHHHHHHHHHHHTSEEEE
T ss_pred hHHHHHHHHHHcCCCcHHHHHHHHCcCHHHHHHHHHHHHHCCCEEEe
Confidence 356788888888888766555554444466777666555 4888887
No 11
>2k02_A Ferrous iron transport protein C; FEOC, iron-sulfur, metal-binding, metal binding protein; NMR {Klebsiella pneumoniae subsp}
Probab=45.54 E-value=27 Score=22.50 Aligned_cols=46 Identities=20% Similarity=0.057 Sum_probs=30.7
Q ss_pred HHHHHHHHHhcCCCCHHHHHHHHHhhChhHHHHHHHHhc-CCeEEEe
Q 035575 8 AESVWKSIESTRSVTEDQLSILHFLFGKNIERATRIVDQ-RGVRRIS 53 (132)
Q Consensus 8 ~~~~~~~i~~~~~ltd~~l~~L~~lf~~~l~~Al~lld~-~~V~~~~ 53 (132)
..+|++.|++.+.++-..|.....+=+.++.+-|+.+++ |.|.++.
T Consensus 4 L~~Il~~L~~~g~vsv~eLA~~l~VS~~TIRrDL~~Le~~G~l~R~~ 50 (87)
T 2k02_A 4 LMEVRDMLALQGRMEAKQLSARLQTPQPLIDAMLERMEAMGKVVRIS 50 (87)
T ss_dssp THHHHHHHHHSCSEEHHHHHHHTTCCHHHHHHHHHHHHTTCCSEEEE
T ss_pred HHHHHHHHHHcCCCcHHHHHHHHCcCHHHHHHHHHHHHHCCCEEEEe
Confidence 467788888888777665555444444667777665555 7888885
No 12
>4ham_A LMO2241 protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, winged helix-turn-helix, four helix bundle; 1.91A {Listeria monocytogenes}
Probab=41.39 E-value=49 Score=22.08 Aligned_cols=55 Identities=9% Similarity=0.174 Sum_probs=35.0
Q ss_pred hHHHHHHHHHHHHhcC-----CC-CHHHHHHHHHhhC---hhHHHHHHHHhcCCeEEEeeCCCcceEEEE
Q 035575 4 SSLVAESVWKSIESTR-----SV-TEDQLSILHFLFG---KNIERATRIVDQRGVRRISGEPSGRSIFKV 64 (132)
Q Consensus 4 ~~~v~~~~~~~i~~~~-----~l-td~~l~~L~~lf~---~~l~~Al~lld~~~V~~~~~~~s~r~~y~V 64 (132)
-.+|+++|.+.|.+.. .| |+ ..|..-|| .++.+|+..+....+.... .|++.|+.
T Consensus 16 Y~QI~~~i~~~I~~G~l~pG~~LPse---r~La~~~gVSr~tVReAl~~L~~eGlv~~~---~g~G~~V~ 79 (134)
T 4ham_A 16 YEQIVQKIKEQVVKGVLQEGEKILSI---REFASRIGVNPNTVSKAYQELERQEVIITV---KGKGTFIA 79 (134)
T ss_dssp HHHHHHHHHHHHHHTSSCTTCEECCH---HHHHHHHTCCHHHHHHHHHHHHHTTSEEEE---TTTEEEEC
T ss_pred HHHHHHHHHHHHHcCCCCCCCCCccH---HHHHHHHCCCHHHHHHHHHHHHHCCcEEEE---cCcEEEEe
Confidence 3568888888887533 34 33 34666667 5689999988776655543 13555553
No 13
>2xzm_8 RPS25E,; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_8
Probab=40.50 E-value=23 Score=25.23 Aligned_cols=60 Identities=13% Similarity=0.199 Sum_probs=43.1
Q ss_pred HHHHHHHHHHHhc-CCCCHHHHHHHHHhhChhHHHHHHHHhc-CCeEEEeeCCCcceEEEEec
Q 035575 6 LVAESVWKSIEST-RSVTEDQLSILHFLFGKNIERATRIVDQ-RGVRRISGEPSGRSIFKVVG 66 (132)
Q Consensus 6 ~v~~~~~~~i~~~-~~ltd~~l~~L~~lf~~~l~~Al~lld~-~~V~~~~~~~s~r~~y~V~g 66 (132)
...|.|.+++..- +-+|+-.+..=..|=++...++|+-+.+ |-|+.+. ..+.-.+|.-..
T Consensus 48 ~tydKL~KEVpk~gKlITpsvlseRlkI~gSLARkaLreL~~kGlIk~V~-kh~~q~IYTra~ 109 (143)
T 2xzm_8 48 KNVESIINNPSKVGKVLTVSTVVEKLKVNGSLARQLMRTMADRKLVEKVA-KNGNQWVYSVIG 109 (143)
T ss_dssp HHHHHHHTCCTTSCSEECHHHHHHHHCBCHHHHHHHHHHHHHTTSEEEEE-EETTEEEEEETT
T ss_pred HHHHHHHHHhcccceeecHHHHHHHhcchHHHHHHHHHHHHHCCCEEEEe-cCCCeEEEecCC
Confidence 4567777777777 7889998887777777778888766655 6666665 565667777653
No 14
>3eyy_A Putative iron uptake regulatory protein; NUR, nickel-uptake regulator, D-domain, dimerization domain, DB-domain, DNA-binding domain; 2.40A {Streptomyces coelicolor}
Probab=40.31 E-value=85 Score=21.31 Aligned_cols=54 Identities=13% Similarity=0.233 Sum_probs=34.0
Q ss_pred HHHHHHhcCCCC-HHHHHHHHHhhC----hhHHHHHHHHhc-CCeEEEeeCCCcceEEEEe
Q 035575 11 VWKSIESTRSVT-EDQLSILHFLFG----KNIERATRIVDQ-RGVRRISGEPSGRSIFKVV 65 (132)
Q Consensus 11 ~~~~i~~~~~lt-d~~l~~L~~lf~----~~l~~Al~lld~-~~V~~~~~~~s~r~~y~V~ 65 (132)
+++.+.+.+.+| +|++..|..-++ .++.++|+++.+ |-|.++. .+.|...|...
T Consensus 24 Il~~l~~~~h~ta~ei~~~l~~~~~~is~~TVYR~L~~L~e~Glv~~i~-~~~~~~~Y~~~ 83 (145)
T 3eyy_A 24 VLEAVDTLEHATPDDILGEVRKTASGINISTVYRTLELLEELGLVSHAH-LGHGAPTYHLA 83 (145)
T ss_dssp HHHHHHHHSSBCHHHHHHHHHTTCTTCCHHHHHHHHHHHHHHTSEEEEE-CGGGCEEEEET
T ss_pred HHHHHHhcCCCCHHHHHHHHHhhCCCCCHhHHHHHHHHHHHCCcEEEEE-eCCCceEEEeC
Confidence 444444434555 455666765554 368899887665 7788886 45566778764
No 15
>2ek5_A Predicted transcriptional regulators; helix-turn-helix, interwined alpha helices; 2.20A {Corynebacterium glutamicum atcc 13032} PDB: 2du9_A
Probab=39.05 E-value=85 Score=20.97 Aligned_cols=47 Identities=13% Similarity=0.086 Sum_probs=30.8
Q ss_pred hhHHHHHHHHHHHHhcC-----CC-CHHHHHHHHHhhC---hhHHHHHHHHhcCCeEEE
Q 035575 3 ASSLVAESVWKSIESTR-----SV-TEDQLSILHFLFG---KNIERATRIVDQRGVRRI 52 (132)
Q Consensus 3 ~~~~v~~~~~~~i~~~~-----~l-td~~l~~L~~lf~---~~l~~Al~lld~~~V~~~ 52 (132)
....|.+.|.+.|.+.. .| ++ ..|..-|| .++.+|+..+....+...
T Consensus 5 ~~~~i~~~i~~~I~~g~l~~G~~LPse---~~La~~~gvSr~tVr~Al~~L~~~Gli~~ 60 (129)
T 2ek5_A 5 LYKQIASLIEDSIVDGTLSIDQRVPST---NELAAFHRINPATARNGLTLLVEAGILYK 60 (129)
T ss_dssp HHHHHHHHHHHHHHTTSSCTTSCBCCH---HHHHHHTTCCHHHHHHHHHHHHTTTSEEE
T ss_pred HHHHHHHHHHHHHHhCCCCCCCcCcCH---HHHHHHHCcCHHHHHHHHHHHHHCCcEEE
Confidence 45567888888887533 23 33 35555566 468999998887665544
No 16
>2p1h_A APAF-1, apoptotic protease-activating factor 1; folding, unfolding, apoptosis; 1.59A {Homo sapiens} SCOP: a.77.1.3 PDB: 1cww_A 1c15_A 1cy5_A 3ygs_C 2ygs_A
Probab=37.86 E-value=56 Score=20.42 Aligned_cols=38 Identities=11% Similarity=0.051 Sum_probs=30.8
Q ss_pred HHHHHHHHHhcCCCCHHHHHHHHHhhChhHHHHHHHHhc
Q 035575 8 AESVWKSIESTRSVTEDQLSILHFLFGKNIERATRIVDQ 46 (132)
Q Consensus 8 ~~~~~~~i~~~~~ltd~~l~~L~~lf~~~l~~Al~lld~ 46 (132)
++.+++.+.+.+-+|++....+..- +.+-.+|-.|+|.
T Consensus 24 v~~lld~L~~~~vlt~~~~e~I~~~-~t~~~kar~Lld~ 61 (94)
T 2p1h_A 24 TSYIMDHMISDGFLTISEEEKVRNE-PTQQQRAAMLIKM 61 (94)
T ss_dssp HHHHHHHHHHHTSSCHHHHHHHHTS-SSHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCCCHHHHHHHHcC-CChHHHHHHHHHH
Confidence 5678888888999999999998876 5567888888765
No 17
>3by6_A Predicted transcriptional regulator; structural genomics, PSI-2, MCSG, structure initiative, midwest center for structural genomic binding; 2.20A {Oenococcus oeni}
Probab=32.55 E-value=1.1e+02 Score=20.25 Aligned_cols=50 Identities=6% Similarity=0.127 Sum_probs=29.6
Q ss_pred hhHHHHHHHHHHHHhcC-----CC-CHHHHHHHHHhhChhHHHHHHHHhcCCeEEE
Q 035575 3 ASSLVAESVWKSIESTR-----SV-TEDQLSILHFLFGKNIERATRIVDQRGVRRI 52 (132)
Q Consensus 3 ~~~~v~~~~~~~i~~~~-----~l-td~~l~~L~~lf~~~l~~Al~lld~~~V~~~ 52 (132)
....|.+.|.+.|.+.. .| ++..|..-..+=..++.+|+..+....+...
T Consensus 12 ~~~~i~~~l~~~I~~g~~~~G~~lPse~~La~~~~vSr~tvr~Al~~L~~~Gli~~ 67 (126)
T 3by6_A 12 VYLQLVDRIKNEVATDVLSANDQLPSVRETALQEKINPNTVAKAYKELEAQKVIRT 67 (126)
T ss_dssp HHHHHHHHHHHHHHTTSSCTTCEECCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEE
T ss_pred HHHHHHHHHHHHHHhCCCCCCCcCcCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEE
Confidence 34567788888887532 23 4444444333322568999888887555443
No 18
>3tqn_A Transcriptional regulator, GNTR family; regulatory functions; 2.80A {Coxiella burnetii}
Probab=31.02 E-value=1.1e+02 Score=19.73 Aligned_cols=48 Identities=8% Similarity=0.101 Sum_probs=29.7
Q ss_pred hHHHHHHHHHHHHhcCCCCH-H---HHHHHHHhhC---hhHHHHHHHHhcCCeEEE
Q 035575 4 SSLVAESVWKSIESTRSVTE-D---QLSILHFLFG---KNIERATRIVDQRGVRRI 52 (132)
Q Consensus 4 ~~~v~~~~~~~i~~~~~ltd-~---~l~~L~~lf~---~~l~~Al~lld~~~V~~~ 52 (132)
...|.+.|.+.|.+.. +.+ + ....|..-|| .++.+|+..+....+...
T Consensus 11 ~~~i~~~i~~~I~~g~-~~~G~~lPs~~~La~~~~vSr~tvr~al~~L~~~Gli~~ 65 (113)
T 3tqn_A 11 YQQLRDKIVEAIIDGS-YVEGEMIPSIRKISTEYQINPLTVSKAYQSLLDDNVIEK 65 (113)
T ss_dssp HHHHHHHHHHHHHHTS-SCTTCEECCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEE
T ss_pred HHHHHHHHHHHHHcCC-CCCCCcCcCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEE
Confidence 4567788888887533 221 1 1234555566 568999988887655443
No 19
>2cmx_A ORF F-112, F112, hypothetical 13.2 kDa protein; sulfolobus spindle virus, thermophilic protein, hypothetical protein; 2.30A {Sulfolobus virus-like particle SSV1} PDB: 2vqc_A
Probab=30.59 E-value=44 Score=22.60 Aligned_cols=42 Identities=19% Similarity=0.209 Sum_probs=32.2
Q ss_pred HHHHHHHHHHHHhcCCCCHHHHHHHHHhhChh---HHHHHHHHhc
Q 035575 5 SLVAESVWKSIESTRSVTEDQLSILHFLFGKN---IERATRIVDQ 46 (132)
Q Consensus 5 ~~v~~~~~~~i~~~~~ltd~~l~~L~~lf~~~---l~~Al~lld~ 46 (132)
-.+|+.+++.+.+.+++|-+...+...+-+++ +.++++.+=+
T Consensus 14 ~q~Ae~l~kiLq~K~Eit~eDIlaqfeIS~s~Ay~I~~~lk~iCE 58 (118)
T 2cmx_A 14 YKMAEIMYKILEKKGELTLEDILAQFEISVPSAYNIQRALKAICE 58 (118)
T ss_dssp HHHHHHHHHHHHHHSEECHHHHHHHHCCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCcCcHHHHHHHhccchhhhhHHHHHHHHHHH
Confidence 46899999999999999988877777666665 4666665533
No 20
>2heo_A Z-DNA binding protein 1; protein DLM1-Z-DNA complex, immune system-DNA complex; 1.70A {Mus musculus} PDB: 1j75_A
Probab=29.21 E-value=69 Score=18.86 Aligned_cols=43 Identities=9% Similarity=0.053 Sum_probs=27.6
Q ss_pred HHHHHHHHHHhc-CCCCHHHHHHHHHhhChhHHHHHHHHhcCCe
Q 035575 7 VAESVWKSIEST-RSVTEDQLSILHFLFGKNIERATRIVDQRGV 49 (132)
Q Consensus 7 v~~~~~~~i~~~-~~ltd~~l~~L~~lf~~~l~~Al~lld~~~V 49 (132)
.-+++++.+++. +.++-..+.....+=.+++.+.+..+.+..+
T Consensus 11 ~~~~IL~~L~~~~~~~s~~eLA~~lglsr~tv~~~l~~L~~~G~ 54 (67)
T 2heo_A 11 LEQKILQVLSDDGGPVAIFQLVKKCQVPKKTLNQVLYRLKKEDR 54 (67)
T ss_dssp HHHHHHHHHHHHCSCEEHHHHHHHHCSCHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHHHcCCCcCHHHHHHHHCcCHHHHHHHHHHHHHCCc
Confidence 345778877765 4566655555444444678888888777655
No 21
>1hw1_A FADR, fatty acid metabolism regulator protein; helix-turn-helix, helix bundle, transcription; 1.50A {Escherichia coli} SCOP: a.4.5.6 a.78.1.1 PDB: 1hw2_A 1e2x_A 1h9g_A* 1h9t_A
Probab=29.10 E-value=1.5e+02 Score=21.16 Aligned_cols=55 Identities=20% Similarity=0.276 Sum_probs=34.6
Q ss_pred hHHHHHHHHHHHHhcC-----CC-CHHHHHHHHHhhC---hhHHHHHHHHhcCCeEEEeeCCCcceEEEE
Q 035575 4 SSLVAESVWKSIESTR-----SV-TEDQLSILHFLFG---KNIERATRIVDQRGVRRISGEPSGRSIFKV 64 (132)
Q Consensus 4 ~~~v~~~~~~~i~~~~-----~l-td~~l~~L~~lf~---~~l~~Al~lld~~~V~~~~~~~s~r~~y~V 64 (132)
...|.+.|.+.|.+.. .| ++.. |..-|| .++..|+..+....+.... .|++.|+.
T Consensus 9 ~~~v~~~l~~~I~~g~l~pG~~LPsE~e---La~~~gVSR~tVReAL~~L~~eGlv~~~---~g~G~~V~ 72 (239)
T 1hw1_A 9 AGFAEEYIIESIWNNRFPPGTILPAERE---LSELIGVTRTTLREVLQRLARDGWLTIQ---HGKPTKVN 72 (239)
T ss_dssp HHHHHHHHHHHHHTTSSCTTSBCCCHHH---HHHHHTCCHHHHHHHHHHHHHTTSEEEE---TTEEEEEC
T ss_pred HHHHHHHHHHHHHcCCCCCCCCCCCHHH---HHHHHCCCHHHHHHHHHHHHHCCcEEEe---cCCCcEee
Confidence 4567788888887532 45 4544 555566 5689999888876655553 13555543
No 22
>2nz7_A NOD1, caspase recruitment domain-containing protein 4, CARD4; helix swapped, disulfide bond, apoptosis; 1.90A {Homo sapiens} PDB: 2nsn_A
Probab=28.95 E-value=78 Score=20.61 Aligned_cols=39 Identities=5% Similarity=0.124 Sum_probs=29.6
Q ss_pred HHHHHHHHHHhcCCCCHHHHHHHHHhhChhHHHHHHHHhc
Q 035575 7 VAESVWKSIESTRSVTEDQLSILHFLFGKNIERATRIVDQ 46 (132)
Q Consensus 7 v~~~~~~~i~~~~~ltd~~l~~L~~lf~~~l~~Al~lld~ 46 (132)
.++.+++.+.+.+-++++. ..+..--+.+-.+|-.|+|.
T Consensus 28 ~V~~lLD~LL~~~VL~~ee-~~I~~~~~T~~~kaR~Lld~ 66 (98)
T 2nz7_A 28 NTQCLVDNLLKNDYFSAED-AEIVCACPTQPDKVRKILDL 66 (98)
T ss_dssp CCHHHHHHHHHTTSSCHHH-HHHHHTCCSHHHHHHHHHHH
T ss_pred hHHHHHHHHHHcCCCCHHH-HHHHccCCCcHHHHHHHHHH
Confidence 4577888888888999998 77766556667777777764
No 23
>1go3_F DNA-directed RNA polymerase subunit F; transferase, transferase, transcription; 1.75A {Methanococcus jannaschii} SCOP: a.60.8.2
Probab=27.55 E-value=97 Score=20.44 Aligned_cols=39 Identities=13% Similarity=0.180 Sum_probs=28.6
Q ss_pred HHHHHHHHHhcCCCCHHHHHHHHHhhChhHHHHHHHHhcC
Q 035575 8 AESVWKSIESTRSVTEDQLSILHFLFGKNIERATRIVDQR 47 (132)
Q Consensus 8 ~~~~~~~i~~~~~ltd~~l~~L~~lf~~~l~~Al~lld~~ 47 (132)
+.++..++.+.+ +++.....|..+.|.+...+..++-+-
T Consensus 52 a~~l~e~L~~~~-l~e~~a~~I~nl~P~t~dElraii~~~ 90 (107)
T 1go3_F 52 AKKLVEELISLG-IDEKTAVKIADILPEDLDDLRAIYYKR 90 (107)
T ss_dssp HHHHHHHHHHTT-CCHHHHHHHHHHCCCSHHHHHHHSTTS
T ss_pred HHHHHHHHHhCC-CCHHHHHHHHHhCCCCHHHHHHHHhcc
Confidence 455556665455 899999999999998887777776554
No 24
>1nvp_D Transcription initiation factor IIA gamma chain; transcription regulation, DNA, complex, transcription/DNA complex; 2.10A {Homo sapiens} SCOP: a.32.1.1 b.56.1.1
Probab=27.27 E-value=1.3e+02 Score=20.20 Aligned_cols=36 Identities=14% Similarity=0.147 Sum_probs=29.0
Q ss_pred HHHHHHHHHhcCCCCHHHHHHHHHhhChhHHHHHHH
Q 035575 8 AESVWKSIESTRSVTEDQLSILHFLFGKNIERATRI 43 (132)
Q Consensus 8 ~~~~~~~i~~~~~ltd~~l~~L~~lf~~~l~~Al~l 43 (132)
...-++++-+++.++|++-...-.-|......||.=
T Consensus 14 L~dtLdEli~~~~Isp~la~kVL~~FDksi~~aL~~ 49 (108)
T 1nvp_D 14 LQESLDELIQSQQITPQLALQVLLQFDKAINAALAQ 49 (108)
T ss_dssp HHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 344556667789999999999999999988888764
No 25
>3edp_A LIN2111 protein; APC88337, listeria innocua CLIP11262, structural GE PSI-2, protein structure initiative, midwest center for STR genomics, MCSG; 2.09A {Listeria innocua}
Probab=25.80 E-value=1.6e+02 Score=21.54 Aligned_cols=46 Identities=22% Similarity=0.292 Sum_probs=29.5
Q ss_pred hHHHHHHHHHHHHhcC-----CC-CHHHHHHHHHhhC---hhHHHHHHHHhc-CCeEEE
Q 035575 4 SSLVAESVWKSIESTR-----SV-TEDQLSILHFLFG---KNIERATRIVDQ-RGVRRI 52 (132)
Q Consensus 4 ~~~v~~~~~~~i~~~~-----~l-td~~l~~L~~lf~---~~l~~Al~lld~-~~V~~~ 52 (132)
...+++.|.+.|.+.. .| |+ ..|..-|| .++.+|++.+.+ |-|.+.
T Consensus 11 ~~~i~~~l~~~I~~g~~~~g~~lPse---~~La~~~~vSr~tvr~Al~~L~~~G~i~~~ 66 (236)
T 3edp_A 11 FEVIASKIKDSINRDEYKTGMLMPNE---TALQEIYSSSRTTIRRAVDLLVEEGLVVRK 66 (236)
T ss_dssp HHHHHHHHHHHHHTTSSCCCC--CCH---HHHHHHTTCCHHHHHHHHHHHHHTTSEEEE
T ss_pred HHHHHHHHHHHHHhCCCCCcCCCcCH---HHHHHHHCcCHHHHHHHHHHHHHCCCEEEE
Confidence 4568888888887632 34 33 45666677 468999887776 445444
No 26
>2dk5_A DNA-directed RNA polymerase III 39 kDa polypeptide; structural genomics, winged helix domain, NPPSFA; NMR {Homo sapiens} SCOP: a.4.5.85
Probab=25.05 E-value=1.3e+02 Score=19.03 Aligned_cols=54 Identities=11% Similarity=0.225 Sum_probs=29.7
Q ss_pred HHHHHHhcC--CCCHHHHHHHHHhhChhHHHHHHHHhc-CCeEEEeeCC-CcceEEEE
Q 035575 11 VWKSIESTR--SVTEDQLSILHFLFGKNIERATRIVDQ-RGVRRISGEP-SGRSIFKV 64 (132)
Q Consensus 11 ~~~~i~~~~--~ltd~~l~~L~~lf~~~l~~Al~lld~-~~V~~~~~~~-s~r~~y~V 64 (132)
+++.|.+.+ .++-..|..-..+=.+++.++++-+++ |-|+++.... ++|.+|.+
T Consensus 25 Vl~~I~~~g~~gi~qkeLa~~~~l~~~tvt~iLk~LE~kglIkr~~~~~~~~rKvy~L 82 (91)
T 2dk5_A 25 VYQIIEDAGNKGIWSRDVRYKSNLPLTEINKILKNLESKKLIKAVKSVAASKKKVYML 82 (91)
T ss_dssp HHHHHHHHCTTCEEHHHHHHHTTCCHHHHHHHHHHHHHTTSEEEECCSSCSSCCEEEE
T ss_pred HHHHHHHcCCCCcCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEecCCCCCCcEEEEE
Confidence 444455422 455555554444444678888877776 5566665332 44555554
No 27
>3bwg_A Uncharacterized HTH-type transcriptional regulato; APC85486, YYDK, transcriptional regulator, structural genomi 2; 2.09A {Bacillus subtilis subsp} SCOP: a.4.5.6 d.190.1.2
Probab=24.18 E-value=1.3e+02 Score=21.98 Aligned_cols=46 Identities=15% Similarity=0.262 Sum_probs=29.4
Q ss_pred hHHHHHHHHHHHHhcC-----CC-CHHHHHHHHHhhC---hhHHHHHHHHhc-CCeEEE
Q 035575 4 SSLVAESVWKSIESTR-----SV-TEDQLSILHFLFG---KNIERATRIVDQ-RGVRRI 52 (132)
Q Consensus 4 ~~~v~~~~~~~i~~~~-----~l-td~~l~~L~~lf~---~~l~~Al~lld~-~~V~~~ 52 (132)
...+++.|.+.|.+.. .| ++. .|..-|| .++.+|++.+.+ |-|.+.
T Consensus 7 ~~~i~~~l~~~I~~g~~~~g~~lPse~---~La~~~~vSr~tvr~Al~~L~~~g~i~~~ 62 (239)
T 3bwg_A 7 YQQIATEIETYIEEHQLQQGDKLPVLE---TLMAQFEVSKSTITKSLELLEQKGAIFQV 62 (239)
T ss_dssp -CHHHHHHHHHHHHTTCCTTCBCCCHH---HHHHHTTCCHHHHHHHHHHHHHTTSEEEE
T ss_pred HHHHHHHHHHHHHhCCCCCCCCCcCHH---HHHHHHCCCHHHHHHHHHHHHHCCcEEEe
Confidence 4467888888887532 34 344 4555566 568899887776 555543
No 28
>2b0l_A GTP-sensing transcriptional pleiotropic repressor; CODY, DNA-binding, nucleotide-binding, transcript regulation, winged HTH motif.; 2.90A {Bacillus subtilis} SCOP: a.4.5.66
Probab=23.73 E-value=58 Score=21.01 Aligned_cols=36 Identities=22% Similarity=0.232 Sum_probs=21.6
Q ss_pred HHHHHhhC---hhHHHHHHHHhcCCeEEEeeCCCc-ceEEEE
Q 035575 27 SILHFLFG---KNIERATRIVDQRGVRRISGEPSG-RSIFKV 64 (132)
Q Consensus 27 ~~L~~lf~---~~l~~Al~lld~~~V~~~~~~~s~-r~~y~V 64 (132)
..|..-|| .++.+|++.+.+..+.... +.| +..|+.
T Consensus 47 ~eLa~~lgVSr~tVr~al~~L~~~GlI~~~--~gG~~G~~V~ 86 (102)
T 2b0l_A 47 SKIADRVGITRSVIVNALRKLESAGVIESR--SLGMKGTYIK 86 (102)
T ss_dssp HHHHHHHTCCHHHHHHHHHHHHHTTSEEEE--ECSSSCEEEE
T ss_pred HHHHHHHCcCHHHHHHHHHHHHHCCCEEEE--eCCCCcEEEe
Confidence 34555555 5689999888876655443 322 455544
No 29
>1nh2_D Transcription initiation factor IIA small chain; transcription/DNA; HET: 5IU; 1.90A {Saccharomyces cerevisiae} SCOP: a.32.1.1 b.56.1.1 PDB: 1ytf_D* 1rm1_B
Probab=23.17 E-value=1.6e+02 Score=20.13 Aligned_cols=35 Identities=9% Similarity=0.051 Sum_probs=28.6
Q ss_pred HHHHHHHHHhcCCCCHHHHHHHHHhhChhHHHHHH
Q 035575 8 AESVWKSIESTRSVTEDQLSILHFLFGKNIERATR 42 (132)
Q Consensus 8 ~~~~~~~i~~~~~ltd~~l~~L~~lf~~~l~~Al~ 42 (132)
....++++-+++.++|++-...-.-|...+..||.
T Consensus 18 L~dtLdEli~~~~Isp~la~kVL~~FDksi~~aL~ 52 (121)
T 1nh2_D 18 LVDALDTLISDGRIEASLAMRVLETFDKVVAETLK 52 (121)
T ss_dssp HHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 34455666778999999999999999998888876
No 30
>3ihu_A Transcriptional regulator, GNTR family; YP_298823.1, DNA binding protein, structural genomics, joint for structural genomics, JCSG; HET: MSE; 1.92A {Ralstonia eutropha}
Probab=23.04 E-value=1.9e+02 Score=20.51 Aligned_cols=48 Identities=21% Similarity=0.275 Sum_probs=32.2
Q ss_pred hhHHHHHHHHHHHHhc-----CCCCHHHHHHHHHhhC---hhHHHHHHHHhcCCeEEEe
Q 035575 3 ASSLVAESVWKSIEST-----RSVTEDQLSILHFLFG---KNIERATRIVDQRGVRRIS 53 (132)
Q Consensus 3 ~~~~v~~~~~~~i~~~-----~~ltd~~l~~L~~lf~---~~l~~Al~lld~~~V~~~~ 53 (132)
....|.++|.+.|.+. ..|++. .|..-|| .++..|+..+....+....
T Consensus 17 ~~~~v~~~l~~~I~~g~l~pG~~L~E~---~La~~lgVSRtpVREAl~~L~~eGlv~~~ 72 (222)
T 3ihu_A 17 ASDTVFFGIMSGLELGTFVPGQRLVET---DLVAHFGVGRNSVREALQRLAAEGIVDLQ 72 (222)
T ss_dssp HHHHHHHHHHHHHHHTSSCTTCEECHH---HHHHHHTCCHHHHHHHHHHHHHTTSEEEC
T ss_pred HHHHHHHHHHHHHHhCCCCCCCccCHH---HHHHHHCCCHHHHHHHHHHHHHCCCEEEe
Confidence 3455677777777653 246644 4555667 5689999999887777664
No 31
>3eet_A Putative GNTR-family transcriptional regulator; structural genomics, PSI-2, protein structure initiative; 1.97A {Streptomyces avermitilis}
Probab=22.18 E-value=2.5e+02 Score=20.97 Aligned_cols=46 Identities=15% Similarity=0.081 Sum_probs=29.7
Q ss_pred hHHHHHHHHHHHHhcC-----CC-CHHHHHHHHHhhC---hhHHHHHHHHhc-CCeEEE
Q 035575 4 SSLVAESVWKSIESTR-----SV-TEDQLSILHFLFG---KNIERATRIVDQ-RGVRRI 52 (132)
Q Consensus 4 ~~~v~~~~~~~i~~~~-----~l-td~~l~~L~~lf~---~~l~~Al~lld~-~~V~~~ 52 (132)
...|++.|.++|.+.. .| |+. .|..-|| .++.+|++.+.+ |-|.+.
T Consensus 31 ~~~i~~~l~~~I~~g~~~~g~~lPse~---~La~~~~vSr~tvr~Al~~L~~~G~i~~~ 86 (272)
T 3eet_A 31 YLRVAGDLRKKIVDGSLPPHTRLPSQA---RIREEYGVSDTVALEARKVLMAEGLVEGR 86 (272)
T ss_dssp HHHHHHHHHHHHHHTSSCTTSBCCCHH---HHHHHHTCCHHHHHHHHHHHHHTTSEEEC
T ss_pred HHHHHHHHHHHHHcCCCCCcCCCcCHH---HHHHHHCCCHHHHHHHHHHHHHCCCEEEe
Confidence 3568888888887532 45 444 4555566 568999887776 444443
No 32
>2wv0_A YVOA, HTH-type transcriptional repressor YVOA; DNA-binding, transcription regulation, transcriptional regulator, GNTR/HUTC family; 2.40A {Bacillus subtilis}
Probab=21.34 E-value=2.4e+02 Score=20.53 Aligned_cols=45 Identities=16% Similarity=0.132 Sum_probs=29.0
Q ss_pred hHHHHHHHHHHHHhcC-----CC-CHHHHHHHHHhhC---hhHHHHHHHHhc-CCeEE
Q 035575 4 SSLVAESVWKSIESTR-----SV-TEDQLSILHFLFG---KNIERATRIVDQ-RGVRR 51 (132)
Q Consensus 4 ~~~v~~~~~~~i~~~~-----~l-td~~l~~L~~lf~---~~l~~Al~lld~-~~V~~ 51 (132)
...|++.|.+.|.+.. .| |+. .|..-|| .++.+|++.+.+ |-|.+
T Consensus 12 ~~~i~~~l~~~I~~g~~~~g~~lPse~---~La~~~~vSr~tvr~Al~~L~~~G~i~~ 66 (243)
T 2wv0_A 12 YYQIMEQLKTQIKNGELQPDMPLPSER---EYAEQFGISRMTVRQALSNLVNEGLLYR 66 (243)
T ss_dssp HHHHHHHHHHHHHHTSSCTTCBCCCHH---HHHHHHTCCHHHHHHHHHHHHHTTSEEE
T ss_pred HHHHHHHHHHHHHhCCCCCcCCCcCHH---HHHHHHCcCHHHHHHHHHHHHHCCcEEE
Confidence 4567888888887532 34 344 4555555 568999887776 55544
No 33
>3neu_A LIN1836 protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG, unknown function; 1.58A {Listeria innocua}
Probab=20.31 E-value=1.9e+02 Score=18.88 Aligned_cols=50 Identities=10% Similarity=0.123 Sum_probs=29.3
Q ss_pred hhHHHHHHHHHHHHhcC-----CC-CHHHHHHHHHhhChhHHHHHHHHhcCCeEEE
Q 035575 3 ASSLVAESVWKSIESTR-----SV-TEDQLSILHFLFGKNIERATRIVDQRGVRRI 52 (132)
Q Consensus 3 ~~~~v~~~~~~~i~~~~-----~l-td~~l~~L~~lf~~~l~~Al~lld~~~V~~~ 52 (132)
....|.+.|.+.|.+.. .| |+..|..-..+=..++.+|+..+....+...
T Consensus 14 ~~~~i~~~i~~~I~~g~~~~g~~Lps~~~La~~~~vSr~tvr~Al~~L~~~G~i~~ 69 (125)
T 3neu_A 14 IYSQISDWMKKQMITGEWKGEDKLPSVREMGVKLAVNPNTVSRAYQELERAGYIYA 69 (125)
T ss_dssp HHHHHHHHHHHHHHTTSSCTTCBCCCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEE
T ss_pred HHHHHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCeEEE
Confidence 34567788888887532 34 2444444333322568999887776544433
No 34
>2di3_A Bacterial regulatory proteins, GNTR family; helix-turn-helix, transcription; 2.05A {Corynebacterium glutamicum}
Probab=20.04 E-value=63 Score=23.42 Aligned_cols=47 Identities=23% Similarity=0.307 Sum_probs=31.0
Q ss_pred hhHHHHHHHHHHHHhcC-----CCC-HHHHHHHHHhhC---hhHHHHHHHHhcCCeEEE
Q 035575 3 ASSLVAESVWKSIESTR-----SVT-EDQLSILHFLFG---KNIERATRIVDQRGVRRI 52 (132)
Q Consensus 3 ~~~~v~~~~~~~i~~~~-----~lt-d~~l~~L~~lf~---~~l~~Al~lld~~~V~~~ 52 (132)
....|.++|.+.|.+.. .|+ +. .|..-|| .++..|+..+....+...
T Consensus 5 l~~~v~~~L~~~I~~g~l~pG~~LpsE~---~La~~lgVSRtpVREAL~~L~~~GlV~~ 60 (239)
T 2di3_A 5 AHESVMDWVTEELRSGRLKIGDHLPSER---ALSETLGVSRSSLREALRVLEALGTIST 60 (239)
T ss_dssp HHHHHHHHHHHHHHHTSSCTTCBCCCHH---HHHHHHTCCHHHHHHHHHHHHHHTSEEC
T ss_pred HHHHHHHHHHHHHHhCCCCCCCcCCCHH---HHHHHHCCCHHHHHHHHHHHHHCCCeEe
Confidence 34567777777777533 352 32 4555567 568999999988666665
Done!