Query 035575
Match_columns 132
No_of_seqs 105 out of 220
Neff 6.4
Searched_HMMs 13730
Date Mon Mar 25 06:26:43 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/035575.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/035575hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1zl8a1 a.194.1.1 (A:4-53) Lin 71.9 4.6 0.00033 22.4 4.7 37 9-45 10-46 (50)
2 d1y74a1 a.194.1.1 (A:17-73) Li 65.7 5 0.00037 22.8 4.1 37 9-45 11-47 (57)
3 d2hs5a1 a.4.5.6 (A:25-93) Puta 57.3 14 0.00099 20.9 5.5 47 4-53 4-58 (69)
4 d1dgna_ a.77.1.3 (A:) Iceberg 56.3 11 0.00077 22.4 4.9 44 3-46 16-59 (89)
5 d3bwga1 a.4.5.6 (A:5-82) Trans 52.5 18 0.0013 20.7 5.7 54 6-65 2-64 (78)
6 d1hw1a1 a.4.5.6 (A:5-78) Fatty 36.2 34 0.0025 19.4 6.4 50 4-53 5-60 (74)
7 d1tzyb_ a.22.1.1 (B:) Histone 34.5 18 0.0013 22.2 3.3 37 1-37 27-74 (92)
8 d1s3ja_ a.4.5.28 (A:) Putative 30.7 43 0.0032 20.6 5.0 46 20-65 32-95 (143)
9 d1sxjd2 c.37.1.20 (D:26-262) R 28.5 62 0.0045 21.0 5.7 27 20-46 186-212 (237)
10 d1v4ra1 a.4.5.6 (A:1-100) Tran 28.0 15 0.0011 22.3 2.0 54 5-64 12-74 (100)
11 d1go3f_ a.60.8.2 (F:) RNA poly 26.4 67 0.0049 19.7 5.2 41 5-46 49-89 (107)
12 d1sxjc2 c.37.1.20 (C:12-238) R 23.8 67 0.0049 20.8 5.2 27 20-46 177-203 (227)
13 d1a5ta2 c.37.1.20 (A:1-207) de 23.4 43 0.0031 22.2 4.0 37 9-45 170-206 (207)
14 d1wi9a_ a.4.5.47 (A:) Hypothet 22.7 70 0.0051 18.6 5.5 54 6-63 7-64 (72)
15 d1la4a_ g.3.6.2 (A:) SGtx1 {Sp 20.3 5.7 0.00042 20.2 -1.0 19 83-103 1-19 (34)
No 1
>d1zl8a1 a.194.1.1 (A:4-53) Lin-7 {Caenorhabditis elegans [TaxId: 6239]}
Probab=71.93 E-value=4.6 Score=22.36 Aligned_cols=37 Identities=19% Similarity=0.206 Sum_probs=31.9
Q ss_pred HHHHHHHHhcCCCCHHHHHHHHHhhChhHHHHHHHHh
Q 035575 9 ESVWKSIESTRSVTEDQLSILHFLFGKNIERATRIVD 45 (132)
Q Consensus 9 ~~~~~~i~~~~~ltd~~l~~L~~lf~~~l~~Al~lld 45 (132)
=++++.+..+++++..-|.+|..+..+.+-.|.+-+-
T Consensus 10 ieLle~Lq~sgevp~~KL~aLqkVLqSdF~~avREVY 46 (50)
T d1zl8a1 10 LELMEHVQKTGEVNNAKLASLQQVLQSEFFGAVREVY 46 (50)
T ss_dssp HHHHHHHGGGSSSTHHHHHHHHHHHSCSHHHHHHHHH
T ss_pred HHHHHHHHHcCCCChHHHHHHHHHHHHHHHHHHHHHH
Confidence 3678888899999999999999999999988876543
No 2
>d1y74a1 a.194.1.1 (A:17-73) Lin-7 {Mouse (Mus musculus) [TaxId: 10090]}
Probab=65.74 E-value=5 Score=22.75 Aligned_cols=37 Identities=14% Similarity=0.182 Sum_probs=31.5
Q ss_pred HHHHHHHHhcCCCCHHHHHHHHHhhChhHHHHHHHHh
Q 035575 9 ESVWKSIESTRSVTEDQLSILHFLFGKNIERATRIVD 45 (132)
Q Consensus 9 ~~~~~~i~~~~~ltd~~l~~L~~lf~~~l~~Al~lld 45 (132)
=++++.+..+++++..-|.+|..+..+.+-.|.+-+-
T Consensus 11 ieLle~LQ~~gevp~~KL~aLqkVLqSdF~~avREVY 47 (57)
T d1y74a1 11 VELLERLQRSGELPPQKLQALQRVLQSRFCSAIREVY 47 (57)
T ss_dssp HHHHHHHHHHTCSCHHHHHHHHHHHHSHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCChHHHHHHHHHHHHHHHHHHHHHH
Confidence 3678888899999999999999999999888876543
No 3
>d2hs5a1 a.4.5.6 (A:25-93) Putative transcriptional regulator RHA1_ro03477 {Rhodococcus sp. RHA1 [TaxId: 101510]}
Probab=57.29 E-value=14 Score=20.88 Aligned_cols=47 Identities=13% Similarity=0.117 Sum_probs=32.2
Q ss_pred hHHHHHHHHHHHHhcC-----CCCHHHHHHHHHhhC---hhHHHHHHHHhcCCeEEEe
Q 035575 4 SSLVAESVWKSIESTR-----SVTEDQLSILHFLFG---KNIERATRIVDQRGVRRIS 53 (132)
Q Consensus 4 ~~~v~~~~~~~i~~~~-----~ltd~~l~~L~~lf~---~~l~~Al~lld~~~V~~~~ 53 (132)
...|++.|.+.|.+.. .|++ ..|...|| .++.+|+..+....+....
T Consensus 4 ~~qi~~~l~~~I~~g~~~~G~~l~~---~~La~~~~vSr~tvr~Al~~L~~~Gli~~~ 58 (69)
T d2hs5a1 4 TTRVAGILRDAIIDGTFRPGARLSE---PDICAALDVSRNTVREAFQILIEDRLVAHE 58 (69)
T ss_dssp HHHHHHHHHHHHHHTSSCTTCEECH---HHHHHHHTCCHHHHHHHHHHHHHTTSEEEE
T ss_pred HHHHHHHHHHHHHcCCCCCcCccCH---HHHHHHHCCCHHHHHHHHHHHHHCCcEEEE
Confidence 4568888888887632 4553 46777777 4689998888776655554
No 4
>d1dgna_ a.77.1.3 (A:) Iceberg {Human (Homo sapiens) [TaxId: 9606]}
Probab=56.35 E-value=11 Score=22.39 Aligned_cols=44 Identities=5% Similarity=0.141 Sum_probs=32.5
Q ss_pred hhHHHHHHHHHHHHhcCCCCHHHHHHHHHhhChhHHHHHHHHhc
Q 035575 3 ASSLVAESVWKSIESTRSVTEDQLSILHFLFGKNIERATRIVDQ 46 (132)
Q Consensus 3 ~~~~v~~~~~~~i~~~~~ltd~~l~~L~~lf~~~l~~Al~lld~ 46 (132)
+.+..++.+++.+-+.+-+|++....+..--+.+-.+|-.|+|-
T Consensus 16 l~~~~v~~vlD~L~~~~Vlt~~e~e~I~~~~~t~~~k~r~LLd~ 59 (89)
T d1dgna_ 16 VGAGTINALLDCLLEDEVISQEDMNKVRDENDTVMDKARVLIDL 59 (89)
T ss_dssp CCHHHHHHHHHHHHHHTCSCHHHHHHHHTCCSSHHHHHHHHHHH
T ss_pred cccccHHHHHHHHHHCCCCCHHHHHHHHhcCCCHHHHHHHHHHH
Confidence 34556788888898899999999998865444556677666653
No 5
>d3bwga1 a.4.5.6 (A:5-82) Transcriptional regulator YydK {Bacillus subtilis [TaxId: 1423]}
Probab=52.51 E-value=18 Score=20.74 Aligned_cols=54 Identities=20% Similarity=0.290 Sum_probs=34.2
Q ss_pred HHHHHHHHHHHhcC-----CC-CHHHHHHHHHhhC---hhHHHHHHHHhcCCeEEEeeCCCcceEEEEe
Q 035575 6 LVAESVWKSIESTR-----SV-TEDQLSILHFLFG---KNIERATRIVDQRGVRRISGEPSGRSIFKVV 65 (132)
Q Consensus 6 ~v~~~~~~~i~~~~-----~l-td~~l~~L~~lf~---~~l~~Al~lld~~~V~~~~~~~s~r~~y~V~ 65 (132)
.|+++|.+.|.+.. .| ++. .|...|+ .++.+|+..+....+..-. .|+..|+..
T Consensus 2 qi~~~i~~~I~~g~l~~G~~LPse~---~La~~~~vSr~tvr~Al~~L~~~Gli~~~---~g~G~~V~~ 64 (78)
T d3bwga1 2 QIATEIETYIEEHQLQQGDKLPVLE---TLMAQFEVSKSTITKSLELLEQKGAIFQV---RGSGIFVRK 64 (78)
T ss_dssp HHHHHHHHHHHHTTCCTTCBCCCHH---HHHHHTTCCHHHHHHHHHHHHHTTSEEEE---TTTEEEECC
T ss_pred HHHHHHHHHHHcCCCCCcCCCcCHH---HHHHHHCCCHHHHHHHHHHHHHCCcEEEE---cCcEEEEcc
Confidence 47788888888633 34 344 4555566 5689998888775554443 245666543
No 6
>d1hw1a1 a.4.5.6 (A:5-78) Fatty acid responsive transcription factor FadR, N-terminal domain {Escherichia coli [TaxId: 562]}
Probab=36.22 E-value=34 Score=19.40 Aligned_cols=50 Identities=20% Similarity=0.207 Sum_probs=30.7
Q ss_pred hHHHHHHHHHHHHhcC-----CC-CHHHHHHHHHhhChhHHHHHHHHhcCCeEEEe
Q 035575 4 SSLVAESVWKSIESTR-----SV-TEDQLSILHFLFGKNIERATRIVDQRGVRRIS 53 (132)
Q Consensus 4 ~~~v~~~~~~~i~~~~-----~l-td~~l~~L~~lf~~~l~~Al~lld~~~V~~~~ 53 (132)
...+.+.|.+.|.+.. .| ++..|.....+=..++.+|++.|....+....
T Consensus 5 ~~~~~e~i~~~I~~g~~~~G~~LPs~~eLa~~~~vSr~tvr~Al~~L~~~G~i~~~ 60 (74)
T d1hw1a1 5 AGFAEEYIIESIWNNRFPPGTILPAERELSELIGVTRTTLREVLQRLARDGWLTIQ 60 (74)
T ss_dssp HHHHHHHHHHHHHTTSSCTTSBCCCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEE
T ss_pred HHHHHHHHHHHHHcCCCCCcCCCccHHHHHHHHCCCHHHHHHHHHHHHHCCcEEEE
Confidence 3456778888887643 45 34434443333336789998888776555443
No 7
>d1tzyb_ a.22.1.1 (B:) Histone H2B {Chicken (Gallus gallus), erythrocytes [TaxId: 9031]}
Probab=34.49 E-value=18 Score=22.20 Aligned_cols=37 Identities=11% Similarity=0.303 Sum_probs=28.1
Q ss_pred CchhHHHHHHHHHHHHhc----------CCCC-HHHHHHHHHhhChhH
Q 035575 1 MSASSLVAESVWKSIEST----------RSVT-EDQLSILHFLFGKNI 37 (132)
Q Consensus 1 ~~~~~~v~~~~~~~i~~~----------~~lt-d~~l~~L~~lf~~~l 37 (132)
|++.++++..+|.+|+.+ .+++ -|+..+...++|..|
T Consensus 27 m~imnsfvndiferIa~EA~~La~~~kr~TitsreIqtAvrL~LPgeL 74 (92)
T d1tzyb_ 27 MGIMNSFVNDIFERIAGEASRLAHYNKRSTITSREIQTAVRLLLPGEL 74 (92)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHHHSCHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCcHHHHHHHHHHHCcHHH
Confidence 678889999999999752 2344 577788888888765
No 8
>d1s3ja_ a.4.5.28 (A:) Putative transcriptional regulator YusO {Bacillus subtilis [TaxId: 1423]}
Probab=30.68 E-value=43 Score=20.56 Aligned_cols=46 Identities=22% Similarity=0.174 Sum_probs=29.5
Q ss_pred CCCHHHHHHHHHhhC-----------------hhHHHH-HHHHhcCCeEEEeeCCCcceEEEEe
Q 035575 20 SVTEDQLSILHFLFG-----------------KNIERA-TRIVDQRGVRRISGEPSGRSIFKVV 65 (132)
Q Consensus 20 ~ltd~~l~~L~~lf~-----------------~~l~~A-l~lld~~~V~~~~~~~s~r~~y~V~ 65 (132)
.+|...+..|..|+. +++.+. -.|.++|-|.+......+|..++..
T Consensus 32 glt~~q~~iL~~l~~~~~~t~~~la~~~~i~~~~vs~~l~~L~~~glv~r~~~~~D~R~~~v~l 95 (143)
T d1s3ja_ 32 GVTPAQLFVLASLKKHGSLKVSEIAERMEVKPSAVTLMADRLEQKNLIARTHNTKDRRVIDLSL 95 (143)
T ss_dssp TCCHHHHHHHHHHHHHSEEEHHHHHHHHTSCHHHHHHHHHHHHHTTSEEEEECSSCTTSEEEEE
T ss_pred CCCHHHHHHHHHHHHCCCCCHHHHHHHHCcCHHHHHHHHHHHHHhhhheeeeecCCCCceEEEE
Confidence 477777777666654 234444 4566778888887555566666665
No 9
>d1sxjd2 c.37.1.20 (D:26-262) Replication factor C2 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=28.53 E-value=62 Score=20.95 Aligned_cols=27 Identities=7% Similarity=0.181 Sum_probs=23.7
Q ss_pred CCCHHHHHHHHHhhChhHHHHHHHHhc
Q 035575 20 SVTEDQLSILHFLFGKNIERATRIVDQ 46 (132)
Q Consensus 20 ~ltd~~l~~L~~lf~~~l~~Al~lld~ 46 (132)
.++|+.+..+....+..+.+|+.+++.
T Consensus 186 ~i~~~~l~~ia~~s~gd~R~ai~~L~~ 212 (237)
T d1sxjd2 186 KCDDGVLERILDISAGDLRRGITLLQS 212 (237)
T ss_dssp CCCHHHHHHHHHHTSSCHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHcCCCHHHHHHHHHH
Confidence 799999999999998888888888764
No 10
>d1v4ra1 a.4.5.6 (A:1-100) Transcriptional repressor TraR, N-terminal domain {Streptomyces sp. [TaxId: 1931]}
Probab=27.95 E-value=15 Score=22.28 Aligned_cols=54 Identities=19% Similarity=0.219 Sum_probs=34.5
Q ss_pred HHHHHHHHHHHHhcC-----CC-CHHHHHHHHHhhC---hhHHHHHHHHhcCCeEEEeeCCCcceEEEE
Q 035575 5 SLVAESVWKSIESTR-----SV-TEDQLSILHFLFG---KNIERATRIVDQRGVRRISGEPSGRSIFKV 64 (132)
Q Consensus 5 ~~v~~~~~~~i~~~~-----~l-td~~l~~L~~lf~---~~l~~Al~lld~~~V~~~~~~~s~r~~y~V 64 (132)
..|+++|.+.|.+.. .| |+. .|...|+ .++.+|++.|....+.... .|+..|+.
T Consensus 12 ~qi~~~i~~~I~~g~l~~G~~LPs~r---~La~~~~vSr~tvr~Al~~L~~~Gli~~~---~g~G~~V~ 74 (100)
T d1v4ra1 12 ADVATHFRTLIKSGELAPGDTLPSVA---DIRAQFGVAAKTVSRALAVLKSEGLVSSR---GALGTVVE 74 (100)
T ss_dssp HHHHHHHHHHTTTTSCCTTSBCCCHH---HHHHHSSSCTTHHHHHTTTTTTSSCCEEE---TTTEEESC
T ss_pred HHHHHHHHHHHHcCCCCCcCCCccHH---HHHHHHCCCHHHHHHHHHHHHHCCcEEEe---cCCEEEEC
Confidence 568888888887642 35 344 4555556 6799999888876655443 23555543
No 11
>d1go3f_ a.60.8.2 (F:) RNA polymerase II subunit RBP4 (RpoF) {Archaeon Methanococcus jannaschii [TaxId: 2190]}
Probab=26.44 E-value=67 Score=19.67 Aligned_cols=41 Identities=10% Similarity=0.107 Sum_probs=29.2
Q ss_pred HHHHHHHHHHHHhcCCCCHHHHHHHHHhhChhHHHHHHHHhc
Q 035575 5 SLVAESVWKSIESTRSVTEDQLSILHFLFGKNIERATRIVDQ 46 (132)
Q Consensus 5 ~~v~~~~~~~i~~~~~ltd~~l~~L~~lf~~~l~~Al~lld~ 46 (132)
|..+.++.+++.+- .++++....|..+.|.+...+..++-+
T Consensus 49 ~e~~~~l~~~L~~~-~~~~~~aakIanL~P~~~dElrai~~~ 89 (107)
T d1go3f_ 49 KEEAKKLVEELISL-GIDEKTAVKIADILPEDLDDLRAIYYK 89 (107)
T ss_dssp HHHHHHHHHHHHHT-TCCHHHHHHHHHHCCCSHHHHHHHSTT
T ss_pred HHHHHHHHHHHHhc-CCCHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 44566667777654 478888888888888887766666644
No 12
>d1sxjc2 c.37.1.20 (C:12-238) Replication factor C3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=23.80 E-value=67 Score=20.79 Aligned_cols=27 Identities=11% Similarity=0.183 Sum_probs=24.4
Q ss_pred CCCHHHHHHHHHhhChhHHHHHHHHhc
Q 035575 20 SVTEDQLSILHFLFGKNIERATRIVDQ 46 (132)
Q Consensus 20 ~ltd~~l~~L~~lf~~~l~~Al~lld~ 46 (132)
.++|+.+..+....+..+.+|+.+++.
T Consensus 177 ~i~~~~l~~i~~~s~Gd~R~ain~Lq~ 203 (227)
T d1sxjc2 177 KLSPNAEKALIELSNGDMRRVLNVLQS 203 (227)
T ss_dssp CBCHHHHHHHHHHHTTCHHHHHHHTTT
T ss_pred cCCHHHHHHHHHHcCCcHHHHHHHHHH
Confidence 799999999999998899999998875
No 13
>d1a5ta2 c.37.1.20 (A:1-207) delta prime subunit of DNA polymerase III, N-domain {Escherichia coli [TaxId: 562]}
Probab=23.36 E-value=43 Score=22.22 Aligned_cols=37 Identities=11% Similarity=0.022 Sum_probs=30.0
Q ss_pred HHHHHHHHhcCCCCHHHHHHHHHhhChhHHHHHHHHh
Q 035575 9 ESVWKSIESTRSVTEDQLSILHFLFGKNIERATRIVD 45 (132)
Q Consensus 9 ~~~~~~i~~~~~ltd~~l~~L~~lf~~~l~~Al~lld 45 (132)
+++.+.+.+...++++.+..+..+.+..+.+|+.+++
T Consensus 170 ~~~~~~L~~~~~~~~~~~~~i~~~s~Gs~r~al~~le 206 (207)
T d1a5ta2 170 QYAVTWLSREVTMSQDALLAALRLSAGSPGAALALFQ 206 (207)
T ss_dssp HHHHHHHHHHCCCCHHHHHHHHHHTTTCHHHHHHTTS
T ss_pred HHHHHHHHHcCCCCHHHHHHHHHHcCCCHHHHHHHhC
Confidence 5566666667778999999999998888999998775
No 14
>d1wi9a_ a.4.5.47 (A:) Hypothetical protein C20orf116 homolog {Mouse (Mus musculus) [TaxId: 10090]}
Probab=22.70 E-value=70 Score=18.56 Aligned_cols=54 Identities=19% Similarity=0.292 Sum_probs=37.8
Q ss_pred HHHHHHHHHHHhcCCCCHHHHHHHHHhhCh----hHHHHHHHHhcCCeEEEeeCCCcceEEE
Q 035575 6 LVAESVWKSIESTRSVTEDQLSILHFLFGK----NIERATRIVDQRGVRRISGEPSGRSIFK 63 (132)
Q Consensus 6 ~v~~~~~~~i~~~~~ltd~~l~~L~~lf~~----~l~~Al~lld~~~V~~~~~~~s~r~~y~ 63 (132)
.+..++++-|+..+.+. |..|+.=|+= ...+--+|...|+++=+. ...|+.+|.
T Consensus 7 ~lL~~FI~~Ik~~Kvv~---LedLAa~F~lktqd~i~RIq~Le~~g~ltGVi-DDRGKfIyI 64 (72)
T d1wi9a_ 7 GFLTEFINYIKKSKVVL---LEDLAFQMGLRTQDAINRIQDLLTEGTLTGVI-DDRGKFIYI 64 (72)
T ss_dssp CHHHHHHHHHHHCSEEC---HHHHHHHHCSCHHHHHHHHHHHHHHSSSCEEE-CTTCCEEEC
T ss_pred HHHHHHHHHHHHCCEee---HHHHHHHcCCcHHHHHHHHHHHHHCCCeeeEE-cCCCCEEEE
Confidence 35567788888887654 5566667773 357778889999999987 455555554
No 15
>d1la4a_ g.3.6.2 (A:) SGtx1 {Spider (Scodra griseipes) [TaxId: 118974]}
Probab=20.27 E-value=5.7 Score=20.20 Aligned_cols=19 Identities=32% Similarity=0.630 Sum_probs=9.8
Q ss_pred cCccchhhhhccCCCccchHH
Q 035575 83 ACYSFFYDIVNKGEQLCCKHQ 103 (132)
Q Consensus 83 sC~~F~~~vl~~~~~~~CKHl 103 (132)
+|.+|.-..- ..+-.|||+
T Consensus 1 ~Cr~~~GGC~--~~sDCC~HL 19 (34)
T d1la4a_ 1 TCRYLFGGCK--TTADCCKHL 19 (34)
T ss_dssp CCBCTTEECS--SGGGBCSSC
T ss_pred CceeeccCcc--cchhhhhcc
Confidence 4555553322 234578885
Done!