BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 035577
(662 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1M9L|A Chain A, Relaxation-Based Refined Structure Of Chlamydomonas Outer
Arm Dynein Light Chain 1
Length = 199
Score = 57.0 bits (136), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 42/133 (31%), Positives = 72/133 (54%), Gaps = 5/133 (3%)
Query: 424 LNLSKNNISTIEGLRELTRLRVLDLSYNRILRIGHGLASCSSLKELYLAGNKISEVEGLH 483
L LS NNI I L + LR+L L N I +I + A +L+EL+++ N+I+ + G+
Sbjct: 54 LALSTNNIEKISSLSGMENLRILSLGRNLIKKIENLDAVADTLEELWISYNQIASLSGIE 113
Query: 484 RLLKLTVLDLRFNKISTAKCLGQLAANYNSLQAISLEGNPA----QKNVGDEQLKKNLQS 539
+L+ L VL + NKI+ + +LAA + L+ + L GNP ++N + + +
Sbjct: 114 KLVNLRVLYMSNNKITNWGEIDKLAA-LDKLEDLLLAGNPLYNDYKENNATSEYRIEVVK 172
Query: 540 LLPHLVYFNWQPM 552
LP+L + P+
Sbjct: 173 RLPNLKKLDGMPV 185
Score = 46.6 bits (109), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 39/115 (33%), Positives = 63/115 (54%), Gaps = 4/115 (3%)
Query: 363 MEAVTKYISSLSASATTVQLSNHGLVVIPFLSAFVSLKVLNLSGNAIVRI-TAGALPRGL 421
+E + +S+L A + LS + + I LS +L++L+L N I +I A+ L
Sbjct: 38 IEKMDATLSTLKA-CKHLALSTNNIEKISSLSGMENLRILSLGRNLIKKIENLDAVADTL 96
Query: 422 HILNLSKNNISTIEGLRELTRLRVLDLSYNRILRIGH--GLASCSSLKELYLAGN 474
L +S N I+++ G+ +L LRVL +S N+I G LA+ L++L LAGN
Sbjct: 97 EELWISYNQIASLSGIEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGN 151
>pdb|1DS9|A Chain A, Solution Structure Of Chlamydomonas Outer Arm Dynein Light
Chain 1
Length = 198
Score = 56.6 bits (135), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 42/133 (31%), Positives = 72/133 (54%), Gaps = 5/133 (3%)
Query: 424 LNLSKNNISTIEGLRELTRLRVLDLSYNRILRIGHGLASCSSLKELYLAGNKISEVEGLH 483
L LS NNI I L + LR+L L N I +I + A +L+EL+++ N+I+ + G+
Sbjct: 53 LALSTNNIEKISSLSGMENLRILSLGRNLIKKIENLDAVADTLEELWISYNQIASLSGIE 112
Query: 484 RLLKLTVLDLRFNKISTAKCLGQLAANYNSLQAISLEGNPA----QKNVGDEQLKKNLQS 539
+L+ L VL + NKI+ + +LAA + L+ + L GNP ++N + + +
Sbjct: 113 KLVNLRVLYMSNNKITNWGEIDKLAA-LDKLEDLLLAGNPLYNDYKENNATSEYRIEVVK 171
Query: 540 LLPHLVYFNWQPM 552
LP+L + P+
Sbjct: 172 RLPNLKKLDGMPV 184
Score = 46.6 bits (109), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 38/114 (33%), Positives = 62/114 (54%), Gaps = 9/114 (7%)
Query: 370 ISSLSASATTVQ------LSNHGLVVIPFLSAFVSLKVLNLSGNAIVRI-TAGALPRGLH 422
I + A+ +T++ LS + + I LS +L++L+L N I +I A+ L
Sbjct: 37 IEKMDATLSTLKACKHLALSTNNIEKISSLSGMENLRILSLGRNLIKKIENLDAVADTLE 96
Query: 423 ILNLSKNNISTIEGLRELTRLRVLDLSYNRILRIGH--GLASCSSLKELYLAGN 474
L +S N I+++ G+ +L LRVL +S N+I G LA+ L++L LAGN
Sbjct: 97 ELWISYNQIASLSGIEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGN 150
>pdb|2OMV|A Chain A, Crystal Structure Of Inla S192n Y369s/hec1 Complex
pdb|2OMW|A Chain A, Crystal Structure Of Inla S192n Y369s/mec1 Complex
Length = 461
Score = 54.3 bits (129), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 67/190 (35%), Positives = 94/190 (49%), Gaps = 13/190 (6%)
Query: 363 MEAVTKYISSLSASA--TTVQLSNHGLVVIPF--LSAFVSLKVLNLSGNAIVRITAGALP 418
+E + IS +SA + T++Q N G V L+ +L+ L++S N + I+ A
Sbjct: 134 LELSSNTISDISALSGLTSLQQLNFGNQVTDLKPLANLTTLERLDISSNKVSDISVLAKL 193
Query: 419 RGLHILNLSKNNISTIEGLRELTRLRVLDLSYNRILRIGHGLASCSSLKELYLAGNKISE 478
L L + N IS I L LT L L L+ N++ IG LAS ++L +L LA N+IS
Sbjct: 194 TNLESLIATNNQISDITPLGILTNLDELSLNGNQLKDIGT-LASLTNLTDLDLANNQISN 252
Query: 479 VEGLHRLLKLTVLDLRFNKISTAKCLGQLAANYNSLQAISLEGNPAQKNVGDEQLKKNLQ 538
+ L L KLT L L N+IS L L A N LE N Q + D NL+
Sbjct: 253 LAPLSGLTKLTELKLGANQISNISPLAGLTALTN------LELNENQ--LEDISPISNLK 304
Query: 539 SLLPHLVYFN 548
+L +YFN
Sbjct: 305 NLTYLTLYFN 314
Score = 42.4 bits (98), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 39/131 (29%), Positives = 60/131 (45%), Gaps = 1/131 (0%)
Query: 378 TTVQLSNHGLVVIPFLSAFVSLKVLNLSGNAIVRITAGALPRGLHILNLSKNNISTIEGL 437
T + L+N+ + + LS L L L N I I+ A L L L++N + I +
Sbjct: 241 TDLDLANNQISNLAPLSGLTKLTELKLGANQISNISPLAGLTALTNLELNENQLEDISPI 300
Query: 438 RELTRLRVLDLSYNRILRIGHGLASCSSLKELYLAGNKISEVEGLHRLLKLTVLDLRFNK 497
L L L L +N I I ++S + L+ L+ + NK+S+V L L + L N+
Sbjct: 301 SNLKNLTYLTLYFNNISDISP-VSSLTKLQRLFFSNNKVSDVSSLANLTNINWLSAGHNQ 359
Query: 498 ISTAKCLGQLA 508
IS L L
Sbjct: 360 ISDLTPLANLT 370
Score = 38.9 bits (89), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 28/86 (32%), Positives = 47/86 (54%), Gaps = 1/86 (1%)
Query: 424 LNLSKNNISTIEGLRELTRLRVLDLSYNRILRIGHGLASCSSLKELYLAGNKISEVEGLH 483
+N S N ++ I L+ LT+L + ++ N+I I LA+ ++L L L N+I++++ L
Sbjct: 68 INFSNNQLTDITPLKNLTKLVDILMNNNQIADITP-LANLTNLTGLTLFNNQITDIDPLK 126
Query: 484 RLLKLTVLDLRFNKISTAKCLGQLAA 509
L L L+L N IS L L +
Sbjct: 127 NLTNLNRLELSSNTISDISALSGLTS 152
Score = 34.3 bits (77), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 31/102 (30%), Positives = 53/102 (51%), Gaps = 1/102 (0%)
Query: 393 LSAFVSLKVLNLSGNAIVRITAGALPRGLHILNLSKNNISTIEGLRELTRLRVLDLSYNR 452
L+ +L L L+ N + I+ + + L L L NNIS I + LT+L+ L S N+
Sbjct: 278 LAGLTALTNLELNENQLEDISPISNLKNLTYLTLYFNNISDISPVSSLTKLQRLFFSNNK 337
Query: 453 ILRIGHGLASCSSLKELYLAGNKISEVEGLHRLLKLTVLDLR 494
+ + LA+ +++ L N+IS++ L L ++T L L
Sbjct: 338 VSDVS-SLANLTNINWLSAGHNQISDLTPLANLTRITQLGLN 378
>pdb|2OMY|A Chain A, Crystal Structure Of Inla S192n/hec1 Complex
Length = 461
Score = 53.9 bits (128), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 67/190 (35%), Positives = 94/190 (49%), Gaps = 13/190 (6%)
Query: 363 MEAVTKYISSLSASA--TTVQLSNHGLVVIPF--LSAFVSLKVLNLSGNAIVRITAGALP 418
+E + IS +SA + T++Q N G V L+ +L+ L++S N + I+ A
Sbjct: 134 LELSSNTISDISALSGLTSLQQLNFGNQVTDLKPLANLTTLERLDISSNKVSDISVLAKL 193
Query: 419 RGLHILNLSKNNISTIEGLRELTRLRVLDLSYNRILRIGHGLASCSSLKELYLAGNKISE 478
L L + N IS I L LT L L L+ N++ IG LAS ++L +L LA N+IS
Sbjct: 194 TNLESLIATNNQISDITPLGILTNLDELSLNGNQLKDIGT-LASLTNLTDLDLANNQISN 252
Query: 479 VEGLHRLLKLTVLDLRFNKISTAKCLGQLAANYNSLQAISLEGNPAQKNVGDEQLKKNLQ 538
+ L L KLT L L N+IS L L A N LE N Q + D NL+
Sbjct: 253 LAPLSGLTKLTELKLGANQISNISPLAGLTALTN------LELNENQ--LEDISPISNLK 304
Query: 539 SLLPHLVYFN 548
+L +YFN
Sbjct: 305 NLTYLTLYFN 314
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 39/131 (29%), Positives = 59/131 (45%), Gaps = 1/131 (0%)
Query: 378 TTVQLSNHGLVVIPFLSAFVSLKVLNLSGNAIVRITAGALPRGLHILNLSKNNISTIEGL 437
T + L+N+ + + LS L L L N I I+ A L L L++N + I +
Sbjct: 241 TDLDLANNQISNLAPLSGLTKLTELKLGANQISNISPLAGLTALTNLELNENQLEDISPI 300
Query: 438 RELTRLRVLDLSYNRILRIGHGLASCSSLKELYLAGNKISEVEGLHRLLKLTVLDLRFNK 497
L L L L +N I I ++S + L+ L+ NK+S+V L L + L N+
Sbjct: 301 SNLKNLTYLTLYFNNISDISP-VSSLTKLQRLFFYNNKVSDVSSLANLTNINWLSAGHNQ 359
Query: 498 ISTAKCLGQLA 508
IS L L
Sbjct: 360 ISDLTPLANLT 370
Score = 38.9 bits (89), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 28/86 (32%), Positives = 47/86 (54%), Gaps = 1/86 (1%)
Query: 424 LNLSKNNISTIEGLRELTRLRVLDLSYNRILRIGHGLASCSSLKELYLAGNKISEVEGLH 483
+N S N ++ I L+ LT+L + ++ N+I I LA+ ++L L L N+I++++ L
Sbjct: 68 INFSNNQLTDITPLKNLTKLVDILMNNNQIADITP-LANLTNLTGLTLFNNQITDIDPLK 126
Query: 484 RLLKLTVLDLRFNKISTAKCLGQLAA 509
L L L+L N IS L L +
Sbjct: 127 NLTNLNRLELSSNTISDISALSGLTS 152
Score = 32.3 bits (72), Expect = 0.98, Method: Compositional matrix adjust.
Identities = 30/102 (29%), Positives = 52/102 (50%), Gaps = 1/102 (0%)
Query: 393 LSAFVSLKVLNLSGNAIVRITAGALPRGLHILNLSKNNISTIEGLRELTRLRVLDLSYNR 452
L+ +L L L+ N + I+ + + L L L NNIS I + LT+L+ L N+
Sbjct: 278 LAGLTALTNLELNENQLEDISPISNLKNLTYLTLYFNNISDISPVSSLTKLQRLFFYNNK 337
Query: 453 ILRIGHGLASCSSLKELYLAGNKISEVEGLHRLLKLTVLDLR 494
+ + LA+ +++ L N+IS++ L L ++T L L
Sbjct: 338 VSDVS-SLANLTNINWLSAGHNQISDLTPLANLTRITQLGLN 378
>pdb|1O6S|A Chain A, Internalin (Listeria Monocytogenes) E-Cadherin (Human)
Recognition Complex
pdb|1O6T|A Chain A, Internalin (Inla,Listeria Monocytogenes) - Functional
Domain, Uncomplexed
pdb|1O6V|A Chain A, Internalin (Inla,Listeria Monocytogenes) - Functional
Domain, Uncomplexed
pdb|1O6V|B Chain B, Internalin (Inla,Listeria Monocytogenes) - Functional
Domain, Uncomplexed
Length = 466
Score = 53.1 bits (126), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 65/180 (36%), Positives = 89/180 (49%), Gaps = 10/180 (5%)
Query: 370 ISSLSASATTVQLSNHGLVV-IPFLSAFVSLKVLNLSGNAIVRITAGALPRGLHILNLSK 428
IS+LS + QLS V + L+ +L+ L++S N + I+ A L L +
Sbjct: 149 ISALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDISSNKVSDISVLAKLTNLESLIATN 208
Query: 429 NNISTIEGLRELTRLRVLDLSYNRILRIGHGLASCSSLKELYLAGNKISEVEGLHRLLKL 488
N IS I L LT L L L+ N++ IG LAS ++L +L LA N+IS + L L KL
Sbjct: 209 NQISDITPLGILTNLDELSLNGNQLKDIGT-LASLTNLTDLDLANNQISNLAPLSGLTKL 267
Query: 489 TVLDLRFNKISTAKCLGQLAANYNSLQAISLEGNPAQKNVGDEQLKKNLQSLLPHLVYFN 548
T L L N+IS L L A N LE N Q + D NL++L +YFN
Sbjct: 268 TELKLGANQISNISPLAGLTALTN------LELNENQ--LEDISPISNLKNLTYLTLYFN 319
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 39/131 (29%), Positives = 59/131 (45%), Gaps = 1/131 (0%)
Query: 378 TTVQLSNHGLVVIPFLSAFVSLKVLNLSGNAIVRITAGALPRGLHILNLSKNNISTIEGL 437
T + L+N+ + + LS L L L N I I+ A L L L++N + I +
Sbjct: 246 TDLDLANNQISNLAPLSGLTKLTELKLGANQISNISPLAGLTALTNLELNENQLEDISPI 305
Query: 438 RELTRLRVLDLSYNRILRIGHGLASCSSLKELYLAGNKISEVEGLHRLLKLTVLDLRFNK 497
L L L L +N I I ++S + L+ L+ NK+S+V L L + L N+
Sbjct: 306 SNLKNLTYLTLYFNNISDISP-VSSLTKLQRLFFYNNKVSDVSSLANLTNINWLSAGHNQ 364
Query: 498 ISTAKCLGQLA 508
IS L L
Sbjct: 365 ISDLTPLANLT 375
Score = 39.7 bits (91), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 32/96 (33%), Positives = 51/96 (53%), Gaps = 5/96 (5%)
Query: 424 LNLSKNNISTIEGLRELTRLRVLDLSYNRILRIGHGLASCSSLKELYLAGNKISEVEGLH 483
+N S N ++ I L+ LT+L + ++ N+I I LA+ ++L L L N+I++++ L
Sbjct: 73 INFSNNQLTDITPLKNLTKLVDILMNNNQIADITP-LANLTNLTGLTLFNNQITDIDPLK 131
Query: 484 RLLKLTVLDLRFNKISTAKCLGQLAANYNSLQAISL 519
L L L+L N IS L L SLQ +S
Sbjct: 132 NLTNLNRLELSSNTISDISALSGLT----SLQQLSF 163
Score = 32.3 bits (72), Expect = 0.91, Method: Compositional matrix adjust.
Identities = 30/102 (29%), Positives = 52/102 (50%), Gaps = 1/102 (0%)
Query: 393 LSAFVSLKVLNLSGNAIVRITAGALPRGLHILNLSKNNISTIEGLRELTRLRVLDLSYNR 452
L+ +L L L+ N + I+ + + L L L NNIS I + LT+L+ L N+
Sbjct: 283 LAGLTALTNLELNENQLEDISPISNLKNLTYLTLYFNNISDISPVSSLTKLQRLFFYNNK 342
Query: 453 ILRIGHGLASCSSLKELYLAGNKISEVEGLHRLLKLTVLDLR 494
+ + LA+ +++ L N+IS++ L L ++T L L
Sbjct: 343 VSDV-SSLANLTNINWLSAGHNQISDLTPLANLTRITQLGLN 383
>pdb|2OMZ|A Chain A, Crystal Structure Of Inla Y369a/hec1 Complex
Length = 466
Score = 53.1 bits (126), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 65/180 (36%), Positives = 89/180 (49%), Gaps = 10/180 (5%)
Query: 370 ISSLSASATTVQLSNHGLVV-IPFLSAFVSLKVLNLSGNAIVRITAGALPRGLHILNLSK 428
IS+LS + QLS V + L+ +L+ L++S N + I+ A L L +
Sbjct: 148 ISALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDISSNKVSDISVLAKLTNLESLIATN 207
Query: 429 NNISTIEGLRELTRLRVLDLSYNRILRIGHGLASCSSLKELYLAGNKISEVEGLHRLLKL 488
N IS I L LT L L L+ N++ IG LAS ++L +L LA N+IS + L L KL
Sbjct: 208 NQISDITPLGILTNLDELSLNGNQLKDIGT-LASLTNLTDLDLANNQISNLAPLSGLTKL 266
Query: 489 TVLDLRFNKISTAKCLGQLAANYNSLQAISLEGNPAQKNVGDEQLKKNLQSLLPHLVYFN 548
T L L N+IS L L A N LE N Q + D NL++L +YFN
Sbjct: 267 TELKLGANQISNISPLAGLTALTN------LELNENQ--LEDISPISNLKNLTYLTLYFN 318
Score = 43.9 bits (102), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 40/131 (30%), Positives = 60/131 (45%), Gaps = 1/131 (0%)
Query: 378 TTVQLSNHGLVVIPFLSAFVSLKVLNLSGNAIVRITAGALPRGLHILNLSKNNISTIEGL 437
T + L+N+ + + LS L L L N I I+ A L L L++N + I +
Sbjct: 245 TDLDLANNQISNLAPLSGLTKLTELKLGANQISNISPLAGLTALTNLELNENQLEDISPI 304
Query: 438 RELTRLRVLDLSYNRILRIGHGLASCSSLKELYLAGNKISEVEGLHRLLKLTVLDLRFNK 497
L L L L +N I I ++S + L+ L+ A NK+S+V L L + L N+
Sbjct: 305 SNLKNLTYLTLYFNNISDISP-VSSLTKLQRLFFANNKVSDVSSLANLTNINWLSAGHNQ 363
Query: 498 ISTAKCLGQLA 508
IS L L
Sbjct: 364 ISDLTPLANLT 374
Score = 39.7 bits (91), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 32/96 (33%), Positives = 51/96 (53%), Gaps = 5/96 (5%)
Query: 424 LNLSKNNISTIEGLRELTRLRVLDLSYNRILRIGHGLASCSSLKELYLAGNKISEVEGLH 483
+N S N ++ I L+ LT+L + ++ N+I I LA+ ++L L L N+I++++ L
Sbjct: 72 INFSNNQLTDITPLKNLTKLVDILMNNNQIADITP-LANLTNLTGLTLFNNQITDIDPLK 130
Query: 484 RLLKLTVLDLRFNKISTAKCLGQLAANYNSLQAISL 519
L L L+L N IS L L SLQ +S
Sbjct: 131 NLTNLNRLELSSNTISDISALSGLT----SLQQLSF 162
>pdb|2OMU|A Chain A, Crystal Structure Of Inla G194s+s Y369s/hec1 Complex
Length = 462
Score = 52.8 bits (125), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 57/156 (36%), Positives = 78/156 (50%), Gaps = 9/156 (5%)
Query: 393 LSAFVSLKVLNLSGNAIVRITAGALPRGLHILNLSKNNISTIEGLRELTRLRVLDLSYNR 452
L+ +L+ L++S N + I+ A L L + N IS I L LT L L L+ N+
Sbjct: 169 LANLTTLERLDISSNKVSDISVLAKLTNLESLIATNNQISDITPLGILTNLDELSLNGNQ 228
Query: 453 ILRIGHGLASCSSLKELYLAGNKISEVEGLHRLLKLTVLDLRFNKISTAKCLGQLAANYN 512
+ IG LAS ++L +L LA N+IS + L L KLT L L N+IS L L A N
Sbjct: 229 LKDIGT-LASLTNLTDLDLANNQISNLAPLSGLTKLTELKLGANQISNISPLAGLTALTN 287
Query: 513 SLQAISLEGNPAQKNVGDEQLKKNLQSLLPHLVYFN 548
LE N Q + D NL++L +YFN
Sbjct: 288 ------LELNENQ--LEDISPISNLKNLTYLTLYFN 315
Score = 45.1 bits (105), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 43/132 (32%), Positives = 67/132 (50%), Gaps = 4/132 (3%)
Query: 378 TTVQLSNHGLVVIPFLSAFVSLKVLNLSGNAIVRITAGALPRGLHILNLSKNNISTIEGL 437
T + L N+ + I L +L L LS N I I+A + L L+ S N ++ ++ L
Sbjct: 110 TGLTLFNNQITDIDPLKNLTNLNRLELSSNTISDISALSGLTSLQQLSFSSNQVTDLKPL 169
Query: 438 RELTRLRVLDLSYNRILRIGHGLASCSSLKELYLAGNKISEVEGLHRLLKLTVLDLRFNK 497
LT L LD+S N++ I LA ++L+ L N+IS++ L L L L L N+
Sbjct: 170 ANLTTLERLDISSNKVSDISV-LAKLTNLESLIATNNQISDITPLGILTNLDELSLNGNQ 228
Query: 498 ISTAKCLGQLAA 509
+ K +G LA+
Sbjct: 229 L---KDIGTLAS 237
Score = 42.4 bits (98), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 39/131 (29%), Positives = 60/131 (45%), Gaps = 1/131 (0%)
Query: 378 TTVQLSNHGLVVIPFLSAFVSLKVLNLSGNAIVRITAGALPRGLHILNLSKNNISTIEGL 437
T + L+N+ + + LS L L L N I I+ A L L L++N + I +
Sbjct: 242 TDLDLANNQISNLAPLSGLTKLTELKLGANQISNISPLAGLTALTNLELNENQLEDISPI 301
Query: 438 RELTRLRVLDLSYNRILRIGHGLASCSSLKELYLAGNKISEVEGLHRLLKLTVLDLRFNK 497
L L L L +N I I ++S + L+ L+ + NK+S+V L L + L N+
Sbjct: 302 SNLKNLTYLTLYFNNISDISP-VSSLTKLQRLFFSNNKVSDVSSLANLTNINWLSAGHNQ 360
Query: 498 ISTAKCLGQLA 508
IS L L
Sbjct: 361 ISDLTPLANLT 371
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 33/99 (33%), Positives = 52/99 (52%), Gaps = 5/99 (5%)
Query: 424 LNLSKNNISTIEGLRELTRLRVLDLSYNRILRIGHGLASCSSLKELYLAGNKISEVEGLH 483
+N S N ++ I L+ LT+L + ++ N+I I LA+ ++L L L N+I++++ L
Sbjct: 68 INFSNNQLTDITPLKNLTKLVDILMNNNQIADITP-LANLTNLTGLTLFNNQITDIDPLK 126
Query: 484 RLLKLTVLDLRFNKISTAKCLGQLAANYNSLQAISLEGN 522
L L L+L N IS L L SLQ +S N
Sbjct: 127 NLTNLNRLELSSNTISDISALSGLT----SLQQLSFSSN 161
Score = 34.3 bits (77), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 31/102 (30%), Positives = 53/102 (51%), Gaps = 1/102 (0%)
Query: 393 LSAFVSLKVLNLSGNAIVRITAGALPRGLHILNLSKNNISTIEGLRELTRLRVLDLSYNR 452
L+ +L L L+ N + I+ + + L L L NNIS I + LT+L+ L S N+
Sbjct: 279 LAGLTALTNLELNENQLEDISPISNLKNLTYLTLYFNNISDISPVSSLTKLQRLFFSNNK 338
Query: 453 ILRIGHGLASCSSLKELYLAGNKISEVEGLHRLLKLTVLDLR 494
+ + LA+ +++ L N+IS++ L L ++T L L
Sbjct: 339 VSDVS-SLANLTNINWLSAGHNQISDLTPLANLTRITQLGLN 379
>pdb|2OMT|A Chain A, Crystal Structure Of Inla G194s+sHEC1 COMPLEX
Length = 462
Score = 52.8 bits (125), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 64/181 (35%), Positives = 91/181 (50%), Gaps = 11/181 (6%)
Query: 370 ISSLSASATTVQLS--NHGLVVIPFLSAFVSLKVLNLSGNAIVRITAGALPRGLHILNLS 427
IS+LS + QLS ++ + + L+ +L+ L++S N + I+ A L L +
Sbjct: 144 ISALSGLTSLQQLSFSSNQVTDLKPLANLTTLERLDISSNKVSDISVLAKLTNLESLIAT 203
Query: 428 KNNISTIEGLRELTRLRVLDLSYNRILRIGHGLASCSSLKELYLAGNKISEVEGLHRLLK 487
N IS I L LT L L L+ N++ IG LAS ++L +L LA N+IS + L L K
Sbjct: 204 NNQISDITPLGILTNLDELSLNGNQLKDIGT-LASLTNLTDLDLANNQISNLAPLSGLTK 262
Query: 488 LTVLDLRFNKISTAKCLGQLAANYNSLQAISLEGNPAQKNVGDEQLKKNLQSLLPHLVYF 547
LT L L N+IS L L A N LE N Q + D NL++L +YF
Sbjct: 263 LTELKLGANQISNISPLAGLTALTN------LELNENQ--LEDISPISNLKNLTYLTLYF 314
Query: 548 N 548
N
Sbjct: 315 N 315
Score = 45.1 bits (105), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 43/132 (32%), Positives = 67/132 (50%), Gaps = 4/132 (3%)
Query: 378 TTVQLSNHGLVVIPFLSAFVSLKVLNLSGNAIVRITAGALPRGLHILNLSKNNISTIEGL 437
T + L N+ + I L +L L LS N I I+A + L L+ S N ++ ++ L
Sbjct: 110 TGLTLFNNQITDIDPLKNLTNLNRLELSSNTISDISALSGLTSLQQLSFSSNQVTDLKPL 169
Query: 438 RELTRLRVLDLSYNRILRIGHGLASCSSLKELYLAGNKISEVEGLHRLLKLTVLDLRFNK 497
LT L LD+S N++ I LA ++L+ L N+IS++ L L L L L N+
Sbjct: 170 ANLTTLERLDISSNKVSDISV-LAKLTNLESLIATNNQISDITPLGILTNLDELSLNGNQ 228
Query: 498 ISTAKCLGQLAA 509
+ K +G LA+
Sbjct: 229 L---KDIGTLAS 237
Score = 41.6 bits (96), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 33/99 (33%), Positives = 52/99 (52%), Gaps = 5/99 (5%)
Query: 424 LNLSKNNISTIEGLRELTRLRVLDLSYNRILRIGHGLASCSSLKELYLAGNKISEVEGLH 483
+N S N ++ I L+ LT+L + ++ N+I I LA+ ++L L L N+I++++ L
Sbjct: 68 INFSNNQLTDITPLKNLTKLVDILMNNNQIADITP-LANLTNLTGLTLFNNQITDIDPLK 126
Query: 484 RLLKLTVLDLRFNKISTAKCLGQLAANYNSLQAISLEGN 522
L L L+L N IS L L SLQ +S N
Sbjct: 127 NLTNLNRLELSSNTISDISALSGLT----SLQQLSFSSN 161
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 39/131 (29%), Positives = 59/131 (45%), Gaps = 1/131 (0%)
Query: 378 TTVQLSNHGLVVIPFLSAFVSLKVLNLSGNAIVRITAGALPRGLHILNLSKNNISTIEGL 437
T + L+N+ + + LS L L L N I I+ A L L L++N + I +
Sbjct: 242 TDLDLANNQISNLAPLSGLTKLTELKLGANQISNISPLAGLTALTNLELNENQLEDISPI 301
Query: 438 RELTRLRVLDLSYNRILRIGHGLASCSSLKELYLAGNKISEVEGLHRLLKLTVLDLRFNK 497
L L L L +N I I ++S + L+ L+ NK+S+V L L + L N+
Sbjct: 302 SNLKNLTYLTLYFNNISDISP-VSSLTKLQRLFFYNNKVSDVSSLANLTNINWLSAGHNQ 360
Query: 498 ISTAKCLGQLA 508
IS L L
Sbjct: 361 ISDLTPLANLT 371
Score = 32.3 bits (72), Expect = 0.93, Method: Compositional matrix adjust.
Identities = 30/102 (29%), Positives = 52/102 (50%), Gaps = 1/102 (0%)
Query: 393 LSAFVSLKVLNLSGNAIVRITAGALPRGLHILNLSKNNISTIEGLRELTRLRVLDLSYNR 452
L+ +L L L+ N + I+ + + L L L NNIS I + LT+L+ L N+
Sbjct: 279 LAGLTALTNLELNENQLEDISPISNLKNLTYLTLYFNNISDISPVSSLTKLQRLFFYNNK 338
Query: 453 ILRIGHGLASCSSLKELYLAGNKISEVEGLHRLLKLTVLDLR 494
+ + LA+ +++ L N+IS++ L L ++T L L
Sbjct: 339 VSDVS-SLANLTNINWLSAGHNQISDLTPLANLTRITQLGLN 379
>pdb|2OMX|A Chain A, Crystal Structure Of Inla S192n G194s+sHEC1 COMPLEX
Length = 462
Score = 52.8 bits (125), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 64/181 (35%), Positives = 91/181 (50%), Gaps = 11/181 (6%)
Query: 370 ISSLSASATTVQL--SNHGLVVIPFLSAFVSLKVLNLSGNAIVRITAGALPRGLHILNLS 427
IS+LS + QL S++ + + L+ +L+ L++S N + I+ A L L +
Sbjct: 144 ISALSGLTSLQQLNFSSNQVTDLKPLANLTTLERLDISSNKVSDISVLAKLTNLESLIAT 203
Query: 428 KNNISTIEGLRELTRLRVLDLSYNRILRIGHGLASCSSLKELYLAGNKISEVEGLHRLLK 487
N IS I L LT L L L+ N++ IG LAS ++L +L LA N+IS + L L K
Sbjct: 204 NNQISDITPLGILTNLDELSLNGNQLKDIGT-LASLTNLTDLDLANNQISNLAPLSGLTK 262
Query: 488 LTVLDLRFNKISTAKCLGQLAANYNSLQAISLEGNPAQKNVGDEQLKKNLQSLLPHLVYF 547
LT L L N+IS L L A N LE N Q + D NL++L +YF
Sbjct: 263 LTELKLGANQISNISPLAGLTALTN------LELNENQ--LEDISPISNLKNLTYLTLYF 314
Query: 548 N 548
N
Sbjct: 315 N 315
Score = 47.4 bits (111), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 44/132 (33%), Positives = 67/132 (50%), Gaps = 4/132 (3%)
Query: 378 TTVQLSNHGLVVIPFLSAFVSLKVLNLSGNAIVRITAGALPRGLHILNLSKNNISTIEGL 437
T + L N+ + I L +L L LS N I I+A + L LN S N ++ ++ L
Sbjct: 110 TGLTLFNNQITDIDPLKNLTNLNRLELSSNTISDISALSGLTSLQQLNFSSNQVTDLKPL 169
Query: 438 RELTRLRVLDLSYNRILRIGHGLASCSSLKELYLAGNKISEVEGLHRLLKLTVLDLRFNK 497
LT L LD+S N++ I LA ++L+ L N+IS++ L L L L L N+
Sbjct: 170 ANLTTLERLDISSNKVSDISV-LAKLTNLESLIATNNQISDITPLGILTNLDELSLNGNQ 228
Query: 498 ISTAKCLGQLAA 509
+ K +G LA+
Sbjct: 229 L---KDIGTLAS 237
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 39/131 (29%), Positives = 59/131 (45%), Gaps = 1/131 (0%)
Query: 378 TTVQLSNHGLVVIPFLSAFVSLKVLNLSGNAIVRITAGALPRGLHILNLSKNNISTIEGL 437
T + L+N+ + + LS L L L N I I+ A L L L++N + I +
Sbjct: 242 TDLDLANNQISNLAPLSGLTKLTELKLGANQISNISPLAGLTALTNLELNENQLEDISPI 301
Query: 438 RELTRLRVLDLSYNRILRIGHGLASCSSLKELYLAGNKISEVEGLHRLLKLTVLDLRFNK 497
L L L L +N I I ++S + L+ L+ NK+S+V L L + L N+
Sbjct: 302 SNLKNLTYLTLYFNNISDISP-VSSLTKLQRLFFYNNKVSDVSSLANLTNINWLSAGHNQ 360
Query: 498 ISTAKCLGQLA 508
IS L L
Sbjct: 361 ISDLTPLANLT 371
Score = 40.0 bits (92), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 32/99 (32%), Positives = 52/99 (52%), Gaps = 5/99 (5%)
Query: 424 LNLSKNNISTIEGLRELTRLRVLDLSYNRILRIGHGLASCSSLKELYLAGNKISEVEGLH 483
+N S N ++ I L+ LT+L + ++ N+I I LA+ ++L L L N+I++++ L
Sbjct: 68 INFSNNQLTDITPLKNLTKLVDILMNNNQIADITP-LANLTNLTGLTLFNNQITDIDPLK 126
Query: 484 RLLKLTVLDLRFNKISTAKCLGQLAANYNSLQAISLEGN 522
L L L+L N IS L L SLQ ++ N
Sbjct: 127 NLTNLNRLELSSNTISDISALSGLT----SLQQLNFSSN 161
Score = 32.3 bits (72), Expect = 0.95, Method: Compositional matrix adjust.
Identities = 30/102 (29%), Positives = 52/102 (50%), Gaps = 1/102 (0%)
Query: 393 LSAFVSLKVLNLSGNAIVRITAGALPRGLHILNLSKNNISTIEGLRELTRLRVLDLSYNR 452
L+ +L L L+ N + I+ + + L L L NNIS I + LT+L+ L N+
Sbjct: 279 LAGLTALTNLELNENQLEDISPISNLKNLTYLTLYFNNISDISPVSSLTKLQRLFFYNNK 338
Query: 453 ILRIGHGLASCSSLKELYLAGNKISEVEGLHRLLKLTVLDLR 494
+ + LA+ +++ L N+IS++ L L ++T L L
Sbjct: 339 VSDVS-SLANLTNINWLSAGHNQISDLTPLANLTRITQLGLN 379
>pdb|3OJA|A Chain A, Crystal Structure Of Lrim1APL1C COMPLEX
Length = 487
Score = 51.2 bits (121), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 49/146 (33%), Positives = 76/146 (52%), Gaps = 22/146 (15%)
Query: 398 SLKVLNLSGNAIVRITAGALP--RGLHILNLSKNNISTIEGLRELTRLRVLDLSYNRI-- 453
++K L+LSGN + +I+A L L +LNLS N + L L+ LR LDL+ N +
Sbjct: 35 NVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLDLESLSTLRTLDLNNNYVQE 94
Query: 454 LRIGHGL------------ASCS---SLKELYLAGNKISEVEGLHRLLKLTV--LDLRFN 496
L +G + SCS K +YLA NKI+ + L + V LDL+ N
Sbjct: 95 LLVGPSIETLHAANNNISRVSCSRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLN 154
Query: 497 KISTAKCLGQLAANYNSLQAISLEGN 522
+I T +LAA+ ++L+ ++L+ N
Sbjct: 155 EIDTVN-FAELAASSDTLEHLNLQYN 179
Score = 37.4 bits (85), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 38/129 (29%), Positives = 55/129 (42%), Gaps = 22/129 (17%)
Query: 393 LSAFVSLKVLNLSGNAIVRITAGALPRGLHILN------------------LSKNNISTI 434
L + +L+ L+L+ N + + G LH N L+ N I+ +
Sbjct: 76 LESLSTLRTLDLNNNYVQELLVGPSIETLHAANNNISRVSCSRGQGKKNIYLANNKITML 135
Query: 435 EGLRELTRLRV--LDLSYNRI--LRIGHGLASCSSLKELYLAGNKISEVEGLHRLLKLTV 490
L E R RV LDL N I + AS +L+ L L N I +V+G KL
Sbjct: 136 RDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDVKGQVVFAKLKT 195
Query: 491 LDLRFNKIS 499
LDL NK++
Sbjct: 196 LDLSSNKLA 204
Score = 32.3 bits (72), Expect = 0.89, Method: Compositional matrix adjust.
Identities = 25/77 (32%), Positives = 38/77 (49%), Gaps = 1/77 (1%)
Query: 421 LHILNLSKNNISTIEGLRELTRLRVLDLSYNRILRIGHGLASCSSLKELYLAGNKISEVE 480
L LNL N I ++G +L+ LDLS N++ +G S + + + L NK+ +E
Sbjct: 171 LEHLNLQYNFIYDVKGQVVFAKLKTLDLSSNKLAFMGPEFQSAAGVTWISLRNNKLVLIE 230
Query: 481 GLHRLLK-LTVLDLRFN 496
R + L DLR N
Sbjct: 231 KALRFSQNLEHFDLRGN 247
>pdb|3O53|A Chain A, Crystal Structure Of Lrim1 Leucine-Rich Repeat Domain
pdb|3O53|B Chain B, Crystal Structure Of Lrim1 Leucine-Rich Repeat Domain
Length = 317
Score = 50.8 bits (120), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 49/146 (33%), Positives = 76/146 (52%), Gaps = 22/146 (15%)
Query: 398 SLKVLNLSGNAIVRITAGALP--RGLHILNLSKNNISTIEGLRELTRLRVLDLSYNRI-- 453
++K L+LSGN + +I+A L L +LNLS N + L L+ LR LDL+ N +
Sbjct: 35 NVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLDLESLSTLRTLDLNNNYVQE 94
Query: 454 LRIGHGL------------ASCS---SLKELYLAGNKISEVEGLHRLLKLTV--LDLRFN 496
L +G + SCS K +YLA NKI+ + L + V LDL+ N
Sbjct: 95 LLVGPSIETLHAANNNISRVSCSRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLN 154
Query: 497 KISTAKCLGQLAANYNSLQAISLEGN 522
+I T +LAA+ ++L+ ++L+ N
Sbjct: 155 EIDTVN-FAELAASSDTLEHLNLQYN 179
Score = 36.6 bits (83), Expect = 0.047, Method: Compositional matrix adjust.
Identities = 35/106 (33%), Positives = 53/106 (50%), Gaps = 5/106 (4%)
Query: 398 SLKVLNLSGNAIVRITAGALPRGLHILNLSKNNISTIEGLRELTRLRV--LDLSYNRI-- 453
S++ L+ + N I R++ +G + L+ N I+ + L E R RV LDL N I
Sbjct: 100 SIETLHAANNNISRVSCSR-GQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDT 158
Query: 454 LRIGHGLASCSSLKELYLAGNKISEVEGLHRLLKLTVLDLRFNKIS 499
+ AS +L+ L L N I +V+G KL LDL NK++
Sbjct: 159 VNFAELAASSDTLEHLNLQYNFIYDVKGQVVFAKLKTLDLSSNKLA 204
Score = 32.3 bits (72), Expect = 0.82, Method: Compositional matrix adjust.
Identities = 24/74 (32%), Positives = 37/74 (50%), Gaps = 1/74 (1%)
Query: 424 LNLSKNNISTIEGLRELTRLRVLDLSYNRILRIGHGLASCSSLKELYLAGNKISEVEGLH 483
LNL N I ++G +L+ LDLS N++ +G S + + + L NK+ +E
Sbjct: 174 LNLQYNFIYDVKGQVVFAKLKTLDLSSNKLAFMGPEFQSAAGVTWISLRNNKLVLIEKAL 233
Query: 484 RLLK-LTVLDLRFN 496
R + L DLR N
Sbjct: 234 RFSQNLEHFDLRGN 247
>pdb|1XEU|A Chain A, Crystal Structure Of Internalin C From Listeria
Monocytogenes
Length = 263
Score = 49.7 bits (117), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 36/112 (32%), Positives = 60/112 (53%), Gaps = 6/112 (5%)
Query: 424 LNLSKNNISTIEGLRELTRLRVLDLSYNRILRIGHGLASCSSLKELYLAGNKISEVEGLH 483
L+LS N IS + L++LT+L L ++ NR+ + ++C L L+L N++ + + L
Sbjct: 68 LHLSHNQISDLSPLKDLTKLEELSVNRNRLKNLNGIPSAC--LSRLFLDNNELRDTDSLI 125
Query: 484 RLLKLTVLDLRFNKISTAKCLGQLAANYNSLQAISLEGNPAQKNVGDEQLKK 535
L L +L +R NK+ + LG L+ L+ + L GN G +LKK
Sbjct: 126 HLKNLEILSIRNNKLKSIVMLGFLS----KLEVLDLHGNEITNTGGLTRLKK 173
Score = 32.7 bits (73), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 26/96 (27%), Positives = 52/96 (54%), Gaps = 6/96 (6%)
Query: 425 NLSKNNISTIEGLRELTRLRVLDLSYNRILRIGHGLASCSSLKELYLAGNKISEVEGLHR 484
NL K +++ + +EL+ ++ + + I + G+ ++LKEL+L+ N+IS++ L
Sbjct: 25 NLGKQSVTDLVSQKELSGVQNFNGDNSNIQSLA-GMQFFTNLKELHLSHNQISDLSPLKD 83
Query: 485 LLKLTVLDLRFNKIST-----AKCLGQLAANYNSLQ 515
L KL L + N++ + CL +L + N L+
Sbjct: 84 LTKLEELSVNRNRLKNLNGIPSACLSRLFLDNNELR 119
Score = 32.0 bits (71), Expect = 1.00, Method: Compositional matrix adjust.
Identities = 51/200 (25%), Positives = 83/200 (41%), Gaps = 35/200 (17%)
Query: 329 ESDETSVSNDQVKRDPKVLNGSTAVKVDGKVTAGMEAVTKYISSLSASAT-TVQLSNHGL 387
ES + +QV DP + N AVK + G ++VT +S S N +
Sbjct: 1 ESIQRPTPINQVFPDPGLAN---AVKQN----LGKQSVTDLVSQKELSGVQNFNGDNSNI 53
Query: 388 VVIPFLSAFVSLKVLNLSGNAIVRITAGALPRGLHILNLSKNNISTIEG----------- 436
+ + F +LK L+LS N I ++ L L++++N + + G
Sbjct: 54 QSLAGMQFFTNLKELHLSHNQISDLSPLKDLTKLEELSVNRNRLKNLNGIPSACLSRLFL 113
Query: 437 ----------LRELTRLRVLDLSYNRILRIGHGLASCSSLKELYLAGNKISEVEGLHRLL 486
L L L +L + N++ I L S L+ L L GN+I+ GL RL
Sbjct: 114 DNNELRDTDSLIHLKNLEILSIRNNKLKSIVM-LGFLSKLEVLDLHGNEITNTGGLTRLK 172
Query: 487 KLTVLDLRFNKISTAKCLGQ 506
K+ +DL + KC+ +
Sbjct: 173 KVNWIDL-----TGQKCVNE 187
>pdb|2Z81|A Chain A, Crystal Structure Of The Tlr1-tlr2 Heterodimer Induced By
Binding Of A Tri-acylated Lipopeptide
pdb|2Z82|A Chain A, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
Length = 549
Score = 48.9 bits (115), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 39/103 (37%), Positives = 61/103 (59%), Gaps = 10/103 (9%)
Query: 443 LRVLDLSYNRILRIGHG-LASCSSLKELYLAGNKISEVEG--LHRLLKLTVLDLRFNKIS 499
++ LDLS+N+I IGHG L +C++L+ L L ++I+ +EG + L L LDL N +S
Sbjct: 28 MKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLS 87
Query: 500 --TAKCLGQLAANYNSLQAISLEGNPAQKNVGDEQLKKNLQSL 540
++ G L+ SL+ ++L GNP Q +G L NL +L
Sbjct: 88 SLSSSWFGPLS----SLKYLNLMGNPYQ-TLGVTSLFPNLTNL 125
Score = 30.8 bits (68), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 18/55 (32%), Positives = 32/55 (58%), Gaps = 3/55 (5%)
Query: 399 LKVLNLSGNAIVRITAGALPRGLHILNLSKNNISTIEGLRELTRLRVLDLSYNRI 453
++ LNLS I R+ +P+ L +L++S NN+ + L RL+ L +S N++
Sbjct: 412 MRFLNLSSTGI-RVVKTCIPQTLEVLDVSNNNLDSFSLF--LPRLQELYISRNKL 463
>pdb|3A79|A Chain A, Crystal Structure Of Tlr2-Tlr6-Pam2csk4 Complex
pdb|3A7B|A Chain A, Crystal Structure Of Tlr2-Streptococcus Pneumoniae
Lipoteichoic Acid Complex
pdb|3A7C|A Chain A, Crystal Structure Of Tlr2-Pe-Dtpa Complex
Length = 580
Score = 48.9 bits (115), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 39/103 (37%), Positives = 61/103 (59%), Gaps = 10/103 (9%)
Query: 443 LRVLDLSYNRILRIGHG-LASCSSLKELYLAGNKISEVEG--LHRLLKLTVLDLRFNKIS 499
++ LDLS+N+I IGHG L +C++L+ L L ++I+ +EG + L L LDL N +S
Sbjct: 54 MKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLS 113
Query: 500 --TAKCLGQLAANYNSLQAISLEGNPAQKNVGDEQLKKNLQSL 540
++ G L+ SL+ ++L GNP Q +G L NL +L
Sbjct: 114 SLSSSWFGPLS----SLKYLNLMGNPYQ-TLGVTSLFPNLTNL 151
Score = 30.8 bits (68), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 18/55 (32%), Positives = 32/55 (58%), Gaps = 3/55 (5%)
Query: 399 LKVLNLSGNAIVRITAGALPRGLHILNLSKNNISTIEGLRELTRLRVLDLSYNRI 453
++ LNLS I R+ +P+ L +L++S NN+ + L RL+ L +S N++
Sbjct: 438 MRFLNLSSTGI-RVVKTCIPQTLEVLDVSNNNLDSFSLF--LPRLQELYISRNKL 489
>pdb|1H6U|A Chain A, Internalin H: Crystal Structure Of Fused N-Terminal
Domains
Length = 308
Score = 47.8 bits (112), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 46/161 (28%), Positives = 80/161 (49%), Gaps = 6/161 (3%)
Query: 347 LNGSTAVKVDGKVTAGMEAVTKYISSLSASATTVQLSNHGLVVIPFLSAFVSLKVLNLSG 406
L+G T + G +E V +Y+++L ++L ++ + + L + L LSG
Sbjct: 40 LDGITTLSAFGTGVTTIEGV-QYLNNLIG----LELKDNQITDLAPLKNLTKITELELSG 94
Query: 407 NAIVRITAGALPRGLHILNLSKNNISTIEGLRELTRLRVLDLSYNRILRIGHGLASCSSL 466
N + ++A A + + L+L+ I+ + L L+ L+VL L N+I I LA ++L
Sbjct: 95 NPLKNVSAIAGLQSIKTLDLTSTQITDVTPLAGLSNLQVLYLDLNQITNISP-LAGLTNL 153
Query: 467 KELYLAGNKISEVEGLHRLLKLTVLDLRFNKISTAKCLGQL 507
+ L + ++S++ L L KLT L NKIS L L
Sbjct: 154 QYLSIGNAQVSDLTPLANLSKLTTLKADDNKISDISPLASL 194
Score = 42.4 bits (98), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 43/142 (30%), Positives = 70/142 (49%), Gaps = 5/142 (3%)
Query: 378 TTVQLSNHGLVVIPFLSAFVSLKVLNLSGNAIVRITAGALPRGLHILNLSKNNISTIEGL 437
T ++LS + L + ++ S+K L+L+ I +T A L +L L N I+ I L
Sbjct: 88 TELELSGNPLKNVSAIAGLQSIKTLDLTSTQITDVTPLAGLSNLQVLYLDLNQITNISPL 147
Query: 438 RELTRLRVLDLSYNRILRIGHGLASCSSLKELYLAGNKISEVEGLHRLLKLTVLDLRFNK 497
LT L+ L + ++ + LA+ S L L NKIS++ L L L + L+ N+
Sbjct: 148 AGLTNLQYLSIGNAQVSDLTP-LANLSKLTTLKADDNKISDISPLASLPNLIEVHLKNNQ 206
Query: 498 ISTAKCLGQLAANYNSLQAISL 519
IS L AN ++L ++L
Sbjct: 207 ISDVSPL----ANTSNLFIVTL 224
>pdb|3RGX|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1
pdb|3RGZ|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1
Length = 768
Score = 47.0 bits (110), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 48/137 (35%), Positives = 67/137 (48%), Gaps = 16/137 (11%)
Query: 398 SLKVLNLSGNA----IVRITAGALPRGLHILNLSKNNI---STIEGLRELTRLRVLDLSY 450
SL L+LS N+ + +T+ GL LN+S N + + G +L L VLDLS
Sbjct: 101 SLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSA 160
Query: 451 NRIL---RIGHGLA-SCSSLKELYLAGNKISEVEGLHRLLKLTVLDLRFNKISTA-KCLG 505
N I +G L+ C LK L ++GNKIS + R + L LD+ N ST LG
Sbjct: 161 NSISGANVVGWVLSDGCGELKHLAISGNKISGDVDVSRCVNLEFLDVSSNNFSTGIPFLG 220
Query: 506 QLAANYNSLQAISLEGN 522
+A LQ + + GN
Sbjct: 221 DCSA----LQHLDISGN 233
Score = 36.2 bits (82), Expect = 0.061, Method: Compositional matrix adjust.
Identities = 43/139 (30%), Positives = 64/139 (46%), Gaps = 9/139 (6%)
Query: 398 SLKVLNLSGNAI--VRITAGALPRG---LHILNLSKNNISTIEGLRELTRLRVLDLSYNR 452
SL+VL+LS N+I + L G L L +S N IS + L LD+S N
Sbjct: 152 SLEVLDLSANSISGANVVGWVLSDGCGELKHLAISGNKISGDVDVSRCVNLEFLDVSSNN 211
Query: 453 ILRIGHGLASCSSLKELYLAGNKISEVEGLHRLLKLTVLDLRFNKISTAKCLGQLAA-NY 511
L CS+L+ L ++GNK+S R + T +L+ IS+ + +G +
Sbjct: 212 FSTGIPFLGDCSALQHLDISGNKLS--GDFSRAIS-TCTELKLLNISSNQFVGPIPPLPL 268
Query: 512 NSLQAISLEGNPAQKNVGD 530
SLQ +SL N + D
Sbjct: 269 KSLQYLSLAENKFTGEIPD 287
>pdb|3RIZ|A Chain A, Crystal Structure Of The Plant Steroid Receptor Bri1
Ectodomain
pdb|3RJ0|A Chain A, Plant Steroid Receptor Bri1 Ectodomain In Complex With
Brassinolide
Length = 772
Score = 46.6 bits (109), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 48/137 (35%), Positives = 67/137 (48%), Gaps = 16/137 (11%)
Query: 398 SLKVLNLSGNA----IVRITAGALPRGLHILNLSKNNI---STIEGLRELTRLRVLDLSY 450
SL L+LS N+ + +T+ GL LN+S N + + G +L L VLDLS
Sbjct: 98 SLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSA 157
Query: 451 NRILR---IGHGLA-SCSSLKELYLAGNKISEVEGLHRLLKLTVLDLRFNKISTA-KCLG 505
N I +G L+ C LK L ++GNKIS + R + L LD+ N ST LG
Sbjct: 158 NSISGANVVGWVLSDGCGELKHLAISGNKISGDVDVSRCVNLEFLDVSSNNFSTGIPFLG 217
Query: 506 QLAANYNSLQAISLEGN 522
+A LQ + + GN
Sbjct: 218 DCSA----LQHLDISGN 230
Score = 35.8 bits (81), Expect = 0.074, Method: Compositional matrix adjust.
Identities = 43/139 (30%), Positives = 64/139 (46%), Gaps = 9/139 (6%)
Query: 398 SLKVLNLSGNAI--VRITAGALPRG---LHILNLSKNNISTIEGLRELTRLRVLDLSYNR 452
SL+VL+LS N+I + L G L L +S N IS + L LD+S N
Sbjct: 149 SLEVLDLSANSISGANVVGWVLSDGCGELKHLAISGNKISGDVDVSRCVNLEFLDVSSNN 208
Query: 453 ILRIGHGLASCSSLKELYLAGNKISEVEGLHRLLKLTVLDLRFNKISTAKCLGQLAA-NY 511
L CS+L+ L ++GNK+S R + T +L+ IS+ + +G +
Sbjct: 209 FSTGIPFLGDCSALQHLDISGNKLS--GDFSRAIS-TCTELKLLNISSNQFVGPIPPLPL 265
Query: 512 NSLQAISLEGNPAQKNVGD 530
SLQ +SL N + D
Sbjct: 266 KSLQYLSLAENKFTGEIPD 284
>pdb|4B8C|D Chain D, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|J Chain J, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|K Chain K, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|L Chain L, Nuclease Module Of The Yeast Ccr4-Not Complex
Length = 727
Score = 46.2 bits (108), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 41/145 (28%), Positives = 64/145 (44%), Gaps = 27/145 (18%)
Query: 402 LNLSGNAIVRITAGALPRG-LHILNLSKNNISTIEG-LRELTRLRVLDLSYNRILRIGHG 459
L+LS I I+A L L L+ N+++ + ++ L+ LRVLDLS+NR+ +
Sbjct: 229 LDLSNLQIFNISANIFKYDFLTRLYLNGNSLTELPAEIKNLSNLRVLDLSHNRLTSLPAE 288
Query: 460 LASCSSLKELYLAGNKISEVEGLHRLLKLTVLDLRFNKISTAKCLGQLAANYNSLQAISL 519
L SC LK Y N + T L F N +LQ + +
Sbjct: 289 LGSCFQLKYFYFFDNMV------------TTLPWEF-------------GNLCNLQFLGV 323
Query: 520 EGNPAQKNVGDEQLKKNLQSLLPHL 544
EGNP +K +K++ L+ +L
Sbjct: 324 EGNPLEKQFLKILTEKSVTGLIFYL 348
>pdb|4FHO|A Chain A, Crystal Structure Of An Internalin C2 (Inlc2) From
Listeria Monocytogenes Str. 4b F2365 At 1.90 A
Resolution
pdb|4FHO|B Chain B, Crystal Structure Of An Internalin C2 (Inlc2) From
Listeria Monocytogenes Str. 4b F2365 At 1.90 A
Resolution
Length = 231
Score = 45.8 bits (107), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 36/106 (33%), Positives = 57/106 (53%), Gaps = 1/106 (0%)
Query: 402 LNLSGNAIVRITAGALPRGLHILNLSKNNISTIEGLRELTRLRVLDLSYNRILRIGHGLA 461
L LSGN + ++A A + + L+L+ I+ + L L+ L+VL L N+I I LA
Sbjct: 96 LELSGNPLKNVSAIAGLQSIKTLDLTSTQITDVTPLAGLSNLQVLYLDLNQITNISP-LA 154
Query: 462 SCSSLKELYLAGNKISEVEGLHRLLKLTVLDLRFNKISTAKCLGQL 507
++L+ L + N+++++ L L KLT L NKIS L L
Sbjct: 155 GLTNLQYLSIGNNQVNDLTPLANLSKLTTLRADDNKISDISPLASL 200
Score = 44.3 bits (103), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 41/131 (31%), Positives = 65/131 (49%), Gaps = 1/131 (0%)
Query: 378 TTVQLSNHGLVVIPFLSAFVSLKVLNLSGNAIVRITAGALPRGLHILNLSKNNISTIEGL 437
T ++LS + L + ++ S+K L+L+ I +T A L +L L N I+ I L
Sbjct: 94 TELELSGNPLKNVSAIAGLQSIKTLDLTSTQITDVTPLAGLSNLQVLYLDLNQITNISPL 153
Query: 438 RELTRLRVLDLSYNRILRIGHGLASCSSLKELYLAGNKISEVEGLHRLLKLTVLDLRFNK 497
LT L+ L + N++ + LA+ S L L NKIS++ L L L + L+ N+
Sbjct: 154 AGLTNLQYLSIGNNQVNDLTP-LANLSKLTTLRADDNKISDISPLASLPNLIEVHLKDNQ 212
Query: 498 ISTAKCLGQLA 508
IS L L+
Sbjct: 213 ISDVSPLANLS 223
Score = 37.7 bits (86), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 38/128 (29%), Positives = 66/128 (51%), Gaps = 3/128 (2%)
Query: 368 KYISSLSA--SATTVQLSNHGLVVIPFLSAFVSLKVLNLSGNAIVRITAGALPRGLHILN 425
K +S+++ S T+ L++ + + L+ +L+VL L N I I+ A L L+
Sbjct: 104 KNVSAIAGLQSIKTLDLTSTQITDVTPLAGLSNLQVLYLDLNQITNISPLAGLTNLQYLS 163
Query: 426 LSKNNISTIEGLRELTRLRVLDLSYNRILRIGHGLASCSSLKELYLAGNKISEVEGLHRL 485
+ N ++ + L L++L L N+I I LAS +L E++L N+IS+V L L
Sbjct: 164 IGNNQVNDLTPLANLSKLTTLRADDNKISDISP-LASLPNLIEVHLKDNQISDVSPLANL 222
Query: 486 LKLTVLDL 493
L ++ L
Sbjct: 223 SNLFIVTL 230
Score = 36.2 bits (82), Expect = 0.060, Method: Compositional matrix adjust.
Identities = 30/103 (29%), Positives = 52/103 (50%), Gaps = 5/103 (4%)
Query: 420 GLHILNLSKNNISTIEGLRELTRLRVLDLSYNRILRIGHGLASCSSLKELYLAGNKISEV 479
G+ L+ ++TIEG++ L L L+L N+I + L + + + EL L+GN + V
Sbjct: 48 GIATLSAFNTGVTTIEGIQYLNNLIGLELKDNQITDLTP-LKNLTKITELELSGNPLKNV 106
Query: 480 EGLHRLLKLTVLDLRFNKISTAKCLGQLAANYNSLQAISLEGN 522
+ L + LDL +I+ L L+ +LQ + L+ N
Sbjct: 107 SAIAGLQSIKTLDLTSTQITDVTPLAGLS----NLQVLYLDLN 145
>pdb|1DCE|A Chain A, Crystal Structure Of Rab Geranylgeranyltransferase From
Rat Brain
pdb|1DCE|C Chain C, Crystal Structure Of Rab Geranylgeranyltransferase From
Rat Brain
Length = 567
Score = 43.5 bits (101), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 35/115 (30%), Positives = 55/115 (47%), Gaps = 3/115 (2%)
Query: 375 ASATTVQLSNHGLVVIPFLSAFVSLKVLNLSGNAIVRIT-AGALPRGLHILNLSKNNIST 433
A + L++ L V+ L + + L+LS N + + A A R L +L S N +
Sbjct: 441 ADVRVLHLAHKDLTVLCHLEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDNALEN 500
Query: 434 IEGLRELTRLRVLDLSYNRILRIG--HGLASCSSLKELYLAGNKISEVEGLHRLL 486
++G+ L RL+ L L NR+ + L SC L L L GN + + EG+ L
Sbjct: 501 VDGVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERL 555
Score = 39.7 bits (91), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 40/178 (22%), Positives = 87/178 (48%), Gaps = 9/178 (5%)
Query: 366 VTKYISSLSASATTVQLSNHGLVVIPFLSAFVS-LKVLNLSGNAIVRITAGALPRGLHIL 424
+ + + L T+Q + V P +A++ L+ L N+++++ + +L
Sbjct: 391 LMRALDPLLYEKETLQYFSTLKAVDPMRAAYLDDLRSKFLLENSVLKMEYA----DVRVL 446
Query: 425 NLSKNNISTIEGLRELTRLRVLDLSYNRILRIGHGLASCSSLKELYLAGNKISEVEGLHR 484
+L+ +++ + L +L + LDLS+NR+ + LA+ L+ L + N + V+G+
Sbjct: 447 HLAHKDLTVLCHLEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDNALENVDGVAN 506
Query: 485 LLKLTVLDLRFNKISTAKCLGQLAANYNSLQAISLEGNPAQKNVGDEQLKKNLQSLLP 542
L +L L L N++ + + L + L ++L+GN +E +++ L +LP
Sbjct: 507 LPRLQELLLCNNRLQQSAAIQPLVS-CPRLVLLNLQGNSL---CQEEGIQERLAEMLP 560
>pdb|1LTX|A Chain A, Structure Of Rab Escort Protein-1 In Complex With Rab
Geranylgeranyl Transferase And Isoprenoid
Length = 567
Score = 43.1 bits (100), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 35/115 (30%), Positives = 55/115 (47%), Gaps = 3/115 (2%)
Query: 375 ASATTVQLSNHGLVVIPFLSAFVSLKVLNLSGNAIVRIT-AGALPRGLHILNLSKNNIST 433
A + L++ L V+ L + + L+LS N + + A A R L +L S N +
Sbjct: 441 ADVRVLHLAHKDLTVLCHLEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDNALEN 500
Query: 434 IEGLRELTRLRVLDLSYNRILRIG--HGLASCSSLKELYLAGNKISEVEGLHRLL 486
++G+ L RL+ L L NR+ + L SC L L L GN + + EG+ L
Sbjct: 501 VDGVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERL 555
Score = 39.7 bits (91), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 40/178 (22%), Positives = 87/178 (48%), Gaps = 9/178 (5%)
Query: 366 VTKYISSLSASATTVQLSNHGLVVIPFLSAFVS-LKVLNLSGNAIVRITAGALPRGLHIL 424
+ + + L T+Q + V P +A++ L+ L N+++++ + +L
Sbjct: 391 LMRALDPLLYEKETLQYFSTLKAVDPMRAAYLDDLRSKFLLENSVLKMEYA----DVRVL 446
Query: 425 NLSKNNISTIEGLRELTRLRVLDLSYNRILRIGHGLASCSSLKELYLAGNKISEVEGLHR 484
+L+ +++ + L +L + LDLS+NR+ + LA+ L+ L + N + V+G+
Sbjct: 447 HLAHKDLTVLCHLEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDNALENVDGVAN 506
Query: 485 LLKLTVLDLRFNKISTAKCLGQLAANYNSLQAISLEGNPAQKNVGDEQLKKNLQSLLP 542
L +L L L N++ + + L + L ++L+GN +E +++ L +LP
Sbjct: 507 LPRLQELLLCNNRLQQSAAIQPLVS-CPRLVLLNLQGNSL---CQEEGIQERLAEMLP 560
>pdb|2WQX|A Chain A, Inlb321_4r: S199r, D200r, G206r, A227r, C242a Mutant Of
The Listeria Monocytogenes Inlb Internalin Domain
pdb|2WQX|B Chain B, Inlb321_4r: S199r, D200r, G206r, A227r, C242a Mutant Of
The Listeria Monocytogenes Inlb Internalin Domain
Length = 289
Score = 43.1 bits (100), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 33/77 (42%), Positives = 43/77 (55%), Gaps = 2/77 (2%)
Query: 417 LPRGLHILNLSKNNISTIEGLRELTRLRVLDLSYNRILRIGHGLASCSSLKELYLAGNKI 476
LP+ L L L N I+ I L LT+L L L N+I RI LA + L+ LYL+ N I
Sbjct: 131 LPQ-LESLYLGNNKITDITVLSRLTKLDTLSLEDNQIRRIV-PLARLTKLQNLYLSKNHI 188
Query: 477 SEVEGLHRLLKLTVLDL 493
S++ L L L VL+L
Sbjct: 189 SDLRALRGLKNLDVLEL 205
Score = 38.1 bits (87), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 28/70 (40%), Positives = 36/70 (51%)
Query: 379 TVQLSNHGLVVIPFLSAFVSLKVLNLSGNAIVRITAGALPRGLHILNLSKNNISTIEGLR 438
++ L N+ + I LS L L+L N I RI A L L LSKN+IS + LR
Sbjct: 136 SLYLGNNKITDITVLSRLTKLDTLSLEDNQIRRIVPLARLTKLQNLYLSKNHISDLRALR 195
Query: 439 ELTRLRVLDL 448
L L VL+L
Sbjct: 196 GLKNLDVLEL 205
Score = 37.0 bits (84), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 38/107 (35%), Positives = 56/107 (52%), Gaps = 1/107 (0%)
Query: 402 LNLSGNAIVRITAGALPRGLHILNLSKNNISTIEGLRELTRLRVLDLSYNRILRIGHGLA 461
L L+GN + I A + L L L +N + + L++L +L+ L L +N I I +GL
Sbjct: 71 LFLNGNKLTDIKPLANLKNLGWLFLDENKVKDLSSLKDLKKLKSLSLEHNGISDI-NGLV 129
Query: 462 SCSSLKELYLAGNKISEVEGLHRLLKLTVLDLRFNKISTAKCLGQLA 508
L+ LYL NKI+++ L RL KL L L N+I L +L
Sbjct: 130 HLPQLESLYLGNNKITDITVLSRLTKLDTLSLEDNQIRRIVPLARLT 176
>pdb|3V47|A Chain A, Crystal Structure Of The N-Tetminal Fragment Of Zebrafish
Tlr5 In Complex With Salmonella Flagellin
pdb|3V47|B Chain B, Crystal Structure Of The N-Tetminal Fragment Of Zebrafish
Tlr5 In Complex With Salmonella Flagellin
Length = 455
Score = 43.1 bits (100), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 34/92 (36%), Positives = 47/92 (51%), Gaps = 5/92 (5%)
Query: 393 LSAFVSLKVLNLSGNAIVRITAGALPRGLHIL--NLSKNNISTIEG--LRELTRLRVLDL 448
S F L+ L L+ N I +I A H+L NLS+N + +I+ L +L VLDL
Sbjct: 295 FSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDL 354
Query: 449 SYNRILRIG-HGLASCSSLKELYLAGNKISEV 479
SYN I +G +LKEL L N++ V
Sbjct: 355 SYNHIRALGDQSFLGLPNLKELALDTNQLKSV 386
>pdb|3ZYJ|A Chain A, Netring1 In Complex With Ngl1
pdb|3ZYJ|C Chain C, Netring1 In Complex With Ngl1
Length = 440
Score = 42.7 bits (99), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 37/101 (36%), Positives = 52/101 (51%), Gaps = 7/101 (6%)
Query: 400 KVLNLSGNAI--VRITAGALPRGLHILNLSKNNISTIE--GLRELTRLRVLDLSYNRILR 455
++LNL N I +++ + R L IL LS+N+I TIE L L L+L NR+
Sbjct: 67 RLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNRLTT 126
Query: 456 IGHG-LASCSSLKELYLAGNKISEVE--GLHRLLKLTVLDL 493
I +G S LKEL+L N I + +R+ L LDL
Sbjct: 127 IPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDL 167
>pdb|4AW4|A Chain A, Engineered Variant Of Listeria Monocytogenes Inlb
Internalin Domain With An Additional Leucine Rich Repeat
Inserted
pdb|4AW4|B Chain B, Engineered Variant Of Listeria Monocytogenes Inlb
Internalin Domain With An Additional Leucine Rich Repeat
Inserted
pdb|4AW4|C Chain C, Engineered Variant Of Listeria Monocytogenes Inlb
Internalin Domain With An Additional Leucine Rich Repeat
Inserted
Length = 311
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 44/131 (33%), Positives = 68/131 (51%), Gaps = 1/131 (0%)
Query: 378 TTVQLSNHGLVVIPFLSAFVSLKVLNLSGNAIVRITAGALPRGLHILNLSKNNISTIEGL 437
T++ LSN+ + I + ++ L L+GN + I A + L L L +N + + L
Sbjct: 69 TSLNLSNNQITDISPIQYLPNVTKLFLNGNKLTDIKPLANLKNLGWLFLDENKVKDLSSL 128
Query: 438 RELTRLRVLDLSYNRILRIGHGLASCSSLKELYLAGNKISEVEGLHRLLKLTVLDLRFNK 497
++L +L+ L L +N I I +GL L+ LYL NKI+++ L RL KL L L N+
Sbjct: 129 KDLKKLKSLSLEHNGISDI-NGLVHLPQLESLYLGNNKITDITVLSRLTKLDTLSLEDNQ 187
Query: 498 ISTAKCLGQLA 508
IS L L
Sbjct: 188 ISDIVPLAGLT 198
Score = 32.0 bits (71), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 26/70 (37%), Positives = 34/70 (48%)
Query: 379 TVQLSNHGLVVIPFLSAFVSLKVLNLSGNAIVRITAGALPRGLHILNLSKNNISTIEGLR 438
++ L N+ + I LS L L+L N I I A L L LSKN+IS + L
Sbjct: 158 SLYLGNNKITDITVLSRLTKLDTLSLEDNQISDIVPLAGLTKLQNLYLSKNHISDLRALA 217
Query: 439 ELTRLRVLDL 448
L L VL+L
Sbjct: 218 GLKNLDVLEL 227
>pdb|1A9N|A Chain A, Crystal Structure Of The Spliceosomal U2b''-U2a' Protein
Complex Bound To A Fragment Of U2 Small Nuclear Rna
pdb|1A9N|C Chain C, Crystal Structure Of The Spliceosomal U2b''-U2a' Protein
Complex Bound To A Fragment Of U2 Small Nuclear Rna
Length = 176
Score = 41.2 bits (95), Expect = 0.002, Method: Composition-based stats.
Identities = 36/106 (33%), Positives = 51/106 (48%), Gaps = 5/106 (4%)
Query: 402 LNLSGNAIVRI-TAGALPRGLHILNLSKNNISTIEGLRELTRLRVLDLSYNRILRIGHGL 460
L+L G I I GA ++ S N I ++G L RL+ L ++ NRI RIG GL
Sbjct: 24 LDLRGYKIPVIENLGATLDQFDAIDFSDNEIRKLDGFPLLRRLKTLLVNNNRICRIGEGL 83
Query: 461 -ASCSSLKELYLAGNKISE---VEGLHRLLKLTVLDLRFNKISTAK 502
+ L EL L N + E ++ L L LT L + N ++ K
Sbjct: 84 DQALPDLTELILTNNSLVELGDLDPLASLKSLTYLCILRNPVTNKK 129
>pdb|1XKU|A Chain A, Crystal Structure Of The Dimeric Protein Core Of Decorin,
The Archetypal Small Leucine-Rich Repeat Proteoglycan
Length = 330
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 31/87 (35%), Positives = 50/87 (57%), Gaps = 6/87 (6%)
Query: 398 SLKVLNLSGNAIVRITAGALPRGLH---ILNLSKNNISTIEG--LRELTRLRVLDLSYNR 452
SL L+L GN I ++ A +L +GL+ L LS N+IS ++ L LR L L+ N+
Sbjct: 193 SLTELHLDGNKITKVDAASL-KGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNK 251
Query: 453 ILRIGHGLASCSSLKELYLAGNKISEV 479
++++ GLA ++ +YL N IS +
Sbjct: 252 LVKVPGGLADHKYIQVVYLHNNNISAI 278
Score = 37.0 bits (84), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 27/70 (38%), Positives = 38/70 (54%), Gaps = 7/70 (10%)
Query: 434 IEGLRELTRLRVLDLSYNRILRIGHGLASCSSLKELYLAGNKISEVEG--LHRLLKLTVL 491
+G+++L+ +R+ D I I GL SL EL+L GNKI++V+ L L L L
Sbjct: 167 FQGMKKLSYIRIAD---TNITTIPQGLPP--SLTELHLDGNKITKVDAASLKGLNNLAKL 221
Query: 492 DLRFNKISTA 501
L FN IS
Sbjct: 222 GLSFNSISAV 231
>pdb|1XCD|A Chain A, Dimeric Bovine Tissue-Extracted Decorin, Crystal Form 1
pdb|1XEC|A Chain A, Dimeric Bovine Tissue-Extracted Decorin, Crystal Form 2
pdb|1XEC|B Chain B, Dimeric Bovine Tissue-Extracted Decorin, Crystal Form 2
Length = 329
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 31/87 (35%), Positives = 50/87 (57%), Gaps = 6/87 (6%)
Query: 398 SLKVLNLSGNAIVRITAGALPRGLH---ILNLSKNNISTIEG--LRELTRLRVLDLSYNR 452
SL L+L GN I ++ A +L +GL+ L LS N+IS ++ L LR L L+ N+
Sbjct: 193 SLTELHLDGNKITKVDAASL-KGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNK 251
Query: 453 ILRIGHGLASCSSLKELYLAGNKISEV 479
++++ GLA ++ +YL N IS +
Sbjct: 252 LVKVPGGLADHKYIQVVYLHNNNISAI 278
Score = 36.6 bits (83), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 27/70 (38%), Positives = 38/70 (54%), Gaps = 7/70 (10%)
Query: 434 IEGLRELTRLRVLDLSYNRILRIGHGLASCSSLKELYLAGNKISEVEG--LHRLLKLTVL 491
+G+++L+ +R+ D I I GL SL EL+L GNKI++V+ L L L L
Sbjct: 167 FQGMKKLSYIRIAD---TNITTIPQGLPP--SLTELHLDGNKITKVDAASLKGLNNLAKL 221
Query: 492 DLRFNKISTA 501
L FN IS
Sbjct: 222 GLSFNSISAV 231
>pdb|2Y5Q|A Chain A, Listeria Monocytogenes Inlb (Internalin B) Residues 36-392
Length = 362
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 32/77 (41%), Positives = 42/77 (54%), Gaps = 2/77 (2%)
Query: 417 LPRGLHILNLSKNNISTIEGLRELTRLRVLDLSYNRILRIGHGLASCSSLKELYLAGNKI 476
LP+ L L L N I+ I L LT+L L L N+I I LA + L+ LYL+ N I
Sbjct: 133 LPQ-LESLYLGNNKITDITVLSRLTKLDTLSLEDNQISDI-VPLAGLTKLQNLYLSKNHI 190
Query: 477 SEVEGLHRLLKLTVLDL 493
S++ L L L VL+L
Sbjct: 191 SDLRALAGLKNLDVLEL 207
Score = 39.7 bits (91), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 43/121 (35%), Positives = 61/121 (50%), Gaps = 5/121 (4%)
Query: 402 LNLSGNAIVRITAGALPRGLHILNLSKNNISTIEGLRELTRLRVLDLSYNRILRIGHGLA 461
L L+GN + I A + L L L +N + + L++L +L+ L L +N I I +GL
Sbjct: 73 LFLNGNKLTDIKPLANLKNLGWLFLDENKVKDLSSLKDLKKLKSLSLEHNGISDI-NGLV 131
Query: 462 SCSSLKELYLAGNKISEVEGLHRLLKLTVLDLRFNKISTAKCLGQLAANYNSLQAISLEG 521
L+ LYL NKI+++ L RL KL L L N+IS L L LQ + L
Sbjct: 132 HLPQLESLYLGNNKITDITVLSRLTKLDTLSLEDNQISDIVPLAGLT----KLQNLYLSK 187
Query: 522 N 522
N
Sbjct: 188 N 188
Score = 33.1 bits (74), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 26/70 (37%), Positives = 34/70 (48%)
Query: 379 TVQLSNHGLVVIPFLSAFVSLKVLNLSGNAIVRITAGALPRGLHILNLSKNNISTIEGLR 438
++ L N+ + I LS L L+L N I I A L L LSKN+IS + L
Sbjct: 138 SLYLGNNKITDITVLSRLTKLDTLSLEDNQISDIVPLAGLTKLQNLYLSKNHISDLRALA 197
Query: 439 ELTRLRVLDL 448
L L VL+L
Sbjct: 198 GLKNLDVLEL 207
>pdb|1H6T|A Chain A, Internalin B: Crystal Structure Of Fused N-Terminal
Domains
Length = 291
Score = 40.0 bits (92), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 32/77 (41%), Positives = 42/77 (54%), Gaps = 2/77 (2%)
Query: 417 LPRGLHILNLSKNNISTIEGLRELTRLRVLDLSYNRILRIGHGLASCSSLKELYLAGNKI 476
LP+ L L L N I+ I L LT+L L L N+I I LA + L+ LYL+ N I
Sbjct: 133 LPQ-LESLYLGNNKITDITVLSRLTKLDTLSLEDNQISDIV-PLAGLTKLQNLYLSKNHI 190
Query: 477 SEVEGLHRLLKLTVLDL 493
S++ L L L VL+L
Sbjct: 191 SDLRALAGLKNLDVLEL 207
Score = 38.5 bits (88), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 39/107 (36%), Positives = 56/107 (52%), Gaps = 1/107 (0%)
Query: 402 LNLSGNAIVRITAGALPRGLHILNLSKNNISTIEGLRELTRLRVLDLSYNRILRIGHGLA 461
L L+GN + I A + L L L +N + + L++L +L+ L L +N I I +GL
Sbjct: 73 LFLNGNKLTDIKPLANLKNLGWLFLDENKVKDLSSLKDLKKLKSLSLEHNGISDI-NGLV 131
Query: 462 SCSSLKELYLAGNKISEVEGLHRLLKLTVLDLRFNKISTAKCLGQLA 508
L+ LYL NKI+++ L RL KL L L N+IS L L
Sbjct: 132 HLPQLESLYLGNNKITDITVLSRLTKLDTLSLEDNQISDIVPLAGLT 178
Score = 32.3 bits (72), Expect = 0.90, Method: Compositional matrix adjust.
Identities = 26/70 (37%), Positives = 34/70 (48%)
Query: 379 TVQLSNHGLVVIPFLSAFVSLKVLNLSGNAIVRITAGALPRGLHILNLSKNNISTIEGLR 438
++ L N+ + I LS L L+L N I I A L L LSKN+IS + L
Sbjct: 138 SLYLGNNKITDITVLSRLTKLDTLSLEDNQISDIVPLAGLTKLQNLYLSKNHISDLRALA 197
Query: 439 ELTRLRVLDL 448
L L VL+L
Sbjct: 198 GLKNLDVLEL 207
>pdb|2WQW|A Chain A, Double-Disulfide Cross-Linked Crystal Dimer Of The
Listeria Monocytogenes Inlb Internalin Domain
pdb|2WQW|B Chain B, Double-Disulfide Cross-Linked Crystal Dimer Of The
Listeria Monocytogenes Inlb Internalin Domain
Length = 286
Score = 40.0 bits (92), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 44/120 (36%), Positives = 62/120 (51%), Gaps = 4/120 (3%)
Query: 402 LNLSGNAIVRITAGALPRGLHILNLSKNNISTIEGLRELTRLRVLDLSYNRILRIGHGLA 461
L L+GN + I A + L L L +N + + L++L +L+ L L +N I I +GL
Sbjct: 68 LFLNGNKLTDIKPLANLKNLGWLFLDENKVKDLSSLKDLKKLKSLSLEHNGISDI-NGLV 126
Query: 462 SCSSLKELYLAGNKISEVEGLHRLLKLTVLDLRFNKISTA---KCLGQLAANYNSLQAIS 518
L+ LYL NKI+++ L RL KL L L N+IS CL +L Y S IS
Sbjct: 127 HLPQLESLYLGNNKITDITVLSRLTKLDTLSLEDNQISDIVPLACLTKLQNLYLSKNHIS 186
Score = 39.7 bits (91), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 32/77 (41%), Positives = 42/77 (54%), Gaps = 2/77 (2%)
Query: 417 LPRGLHILNLSKNNISTIEGLRELTRLRVLDLSYNRILRIGHGLASCSSLKELYLAGNKI 476
LP+ L L L N I+ I L LT+L L L N+I I LA + L+ LYL+ N I
Sbjct: 128 LPQ-LESLYLGNNKITDITVLSRLTKLDTLSLEDNQISDIV-PLACLTKLQNLYLSKNHI 185
Query: 477 SEVEGLHRLLKLTVLDL 493
S++ L L L VL+L
Sbjct: 186 SDLRALCGLKNLDVLEL 202
Score = 33.1 bits (74), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 26/70 (37%), Positives = 34/70 (48%)
Query: 379 TVQLSNHGLVVIPFLSAFVSLKVLNLSGNAIVRITAGALPRGLHILNLSKNNISTIEGLR 438
++ L N+ + I LS L L+L N I I A L L LSKN+IS + L
Sbjct: 133 SLYLGNNKITDITVLSRLTKLDTLSLEDNQISDIVPLACLTKLQNLYLSKNHISDLRALC 192
Query: 439 ELTRLRVLDL 448
L L VL+L
Sbjct: 193 GLKNLDVLEL 202
>pdb|2UZX|A Chain A, Structure Of The Human Receptor Tyrosine Kinase Met In
Complex With The Listeria Monocytogenes Invasion Protein
Inlb: Crystal Form I
pdb|2UZX|C Chain C, Structure Of The Human Receptor Tyrosine Kinase Met In
Complex With The Listeria Monocytogenes Invasion Protein
Inlb: Crystal Form I
pdb|2UZY|A Chain A, Structure Of The Human Receptor Tyrosine Kinase Met In
Complex With The Listeria Monocytogenes Invasion Protein
Inlb: Low Resolution, Crystal Form Ii
pdb|2UZY|C Chain C, Structure Of The Human Receptor Tyrosine Kinase Met In
Complex With The Listeria Monocytogenes Invasion Protein
Inlb: Low Resolution, Crystal Form Ii
pdb|2WQU|A Chain A, Internalin Domain Of Listeria Monocytogenes Inlb:
Triclinic Crystal Form
pdb|2WQU|B Chain B, Internalin Domain Of Listeria Monocytogenes Inlb:
Triclinic Crystal Form
pdb|2WQU|C Chain C, Internalin Domain Of Listeria Monocytogenes Inlb:
Triclinic Crystal Form
pdb|2WQU|D Chain D, Internalin Domain Of Listeria Monocytogenes Inlb:
Triclinic Crystal Form
pdb|2WQU|E Chain E, Internalin Domain Of Listeria Monocytogenes Inlb:
Triclinic Crystal Form
pdb|2WQU|F Chain F, Internalin Domain Of Listeria Monocytogenes Inlb:
Triclinic Crystal Form
pdb|2WQV|A Chain A, Internalin Domain Of Listeria Monocytogenes Inlb:
Rhombohedral Crystal Form
pdb|2WQV|B Chain B, Internalin Domain Of Listeria Monocytogenes Inlb:
Rhombohedral Crystal Form
Length = 289
Score = 40.0 bits (92), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 32/77 (41%), Positives = 42/77 (54%), Gaps = 2/77 (2%)
Query: 417 LPRGLHILNLSKNNISTIEGLRELTRLRVLDLSYNRILRIGHGLASCSSLKELYLAGNKI 476
LP+ L L L N I+ I L LT+L L L N+I I LA + L+ LYL+ N I
Sbjct: 131 LPQ-LESLYLGNNKITDITVLSRLTKLDTLSLEDNQISDIV-PLAGLTKLQNLYLSKNHI 188
Query: 477 SEVEGLHRLLKLTVLDL 493
S++ L L L VL+L
Sbjct: 189 SDLRALAGLKNLDVLEL 205
Score = 38.1 bits (87), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 39/107 (36%), Positives = 56/107 (52%), Gaps = 1/107 (0%)
Query: 402 LNLSGNAIVRITAGALPRGLHILNLSKNNISTIEGLRELTRLRVLDLSYNRILRIGHGLA 461
L L+GN + I A + L L L +N + + L++L +L+ L L +N I I +GL
Sbjct: 71 LFLNGNKLTDIKPLANLKNLGWLFLDENKVKDLSSLKDLKKLKSLSLEHNGISDI-NGLV 129
Query: 462 SCSSLKELYLAGNKISEVEGLHRLLKLTVLDLRFNKISTAKCLGQLA 508
L+ LYL NKI+++ L RL KL L L N+IS L L
Sbjct: 130 HLPQLESLYLGNNKITDITVLSRLTKLDTLSLEDNQISDIVPLAGLT 176
Score = 32.3 bits (72), Expect = 0.92, Method: Compositional matrix adjust.
Identities = 26/70 (37%), Positives = 34/70 (48%)
Query: 379 TVQLSNHGLVVIPFLSAFVSLKVLNLSGNAIVRITAGALPRGLHILNLSKNNISTIEGLR 438
++ L N+ + I LS L L+L N I I A L L LSKN+IS + L
Sbjct: 136 SLYLGNNKITDITVLSRLTKLDTLSLEDNQISDIVPLAGLTKLQNLYLSKNHISDLRALA 195
Query: 439 ELTRLRVLDL 448
L L VL+L
Sbjct: 196 GLKNLDVLEL 205
>pdb|2FT3|A Chain A, Crystal Structure Of The Biglycan Dimer Core Protein
pdb|2FT3|B Chain B, Crystal Structure Of The Biglycan Dimer Core Protein
pdb|2FT3|C Chain C, Crystal Structure Of The Biglycan Dimer Core Protein
pdb|2FT3|D Chain D, Crystal Structure Of The Biglycan Dimer Core Protein
pdb|2FT3|E Chain E, Crystal Structure Of The Biglycan Dimer Core Protein
pdb|2FT3|F Chain F, Crystal Structure Of The Biglycan Dimer Core Protein
Length = 332
Score = 39.7 bits (91), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 43/119 (36%), Positives = 57/119 (47%), Gaps = 14/119 (11%)
Query: 417 LPRGLHILNLSKNNISTIE--GLRELTRLRVLDLSYNRILRIGHG-LASCSSLKELYLAG 473
LP L+ L+L N I IE L ++L L L +N+I I +G L+ +L+EL+L
Sbjct: 191 LPETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDN 250
Query: 474 NKISEV-EGLHRLLKLTVLDLRFNKISTAKC-------LGQLAANYNSLQAISLEGNPA 524
NK+S V GL L L V+ L N I+ G A YN ISL NP
Sbjct: 251 NKLSRVPAGLPDLKLLQVVYLHTNNITKVGVNDFCPVGFGVKRAYYN---GISLFNNPV 306
>pdb|1OTN|A Chain A, Calcium-Binding Mutant Of The Internalin B Lrr Domain
Length = 236
Score = 38.5 bits (88), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 32/77 (41%), Positives = 42/77 (54%), Gaps = 2/77 (2%)
Query: 417 LPRGLHILNLSKNNISTIEGLRELTRLRVLDLSYNRILRIGHGLASCSSLKELYLAGNKI 476
LP+ L L L N I+ I L LT+L L L N+I I LA + L+ LYL+ N I
Sbjct: 151 LPQ-LESLYLGNNKITDITVLSRLTKLDTLSLEDNQISDI-VPLAGLTKLQNLYLSKNHI 208
Query: 477 SEVEGLHRLLKLTVLDL 493
S++ L L L VL+L
Sbjct: 209 SDLRALAGLKNLDVLEL 225
Score = 35.8 bits (81), Expect = 0.070, Method: Compositional matrix adjust.
Identities = 21/51 (41%), Positives = 27/51 (52%)
Query: 458 HGLASCSSLKELYLAGNKISEVEGLHRLLKLTVLDLRFNKISTAKCLGQLA 508
+GL L+ LYL NKI+++ L RL KL L L N+IS L L
Sbjct: 146 NGLVHLPQLESLYLGNNKITDITVLSRLTKLDTLSLEDNQISDIVPLAGLT 196
Score = 31.2 bits (69), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 26/70 (37%), Positives = 34/70 (48%)
Query: 379 TVQLSNHGLVVIPFLSAFVSLKVLNLSGNAIVRITAGALPRGLHILNLSKNNISTIEGLR 438
++ L N+ + I LS L L+L N I I A L L LSKN+IS + L
Sbjct: 156 SLYLGNNKITDITVLSRLTKLDTLSLEDNQISDIVPLAGLTKLQNLYLSKNHISDLRALA 215
Query: 439 ELTRLRVLDL 448
L L VL+L
Sbjct: 216 GLKNLDVLEL 225
>pdb|1OTO|A Chain A, Calcium-Binding Mutant Of The Internalin B Lrr Domain
Length = 236
Score = 38.5 bits (88), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 32/77 (41%), Positives = 42/77 (54%), Gaps = 2/77 (2%)
Query: 417 LPRGLHILNLSKNNISTIEGLRELTRLRVLDLSYNRILRIGHGLASCSSLKELYLAGNKI 476
LP+ L L L N I+ I L LT+L L L N+I I LA + L+ LYL+ N I
Sbjct: 151 LPQ-LESLYLGNNKITDITVLSRLTKLDTLSLEDNQISDI-VPLAGLTKLQNLYLSKNHI 208
Query: 477 SEVEGLHRLLKLTVLDL 493
S++ L L L VL+L
Sbjct: 209 SDLRALAGLKNLDVLEL 225
Score = 35.8 bits (81), Expect = 0.070, Method: Compositional matrix adjust.
Identities = 21/51 (41%), Positives = 27/51 (52%)
Query: 458 HGLASCSSLKELYLAGNKISEVEGLHRLLKLTVLDLRFNKISTAKCLGQLA 508
+GL L+ LYL NKI+++ L RL KL L L N+IS L L
Sbjct: 146 NGLVHLPQLESLYLGNNKITDITVLSRLTKLDTLSLEDNQISDIVPLAGLT 196
Score = 31.2 bits (69), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 26/70 (37%), Positives = 34/70 (48%)
Query: 379 TVQLSNHGLVVIPFLSAFVSLKVLNLSGNAIVRITAGALPRGLHILNLSKNNISTIEGLR 438
++ L N+ + I LS L L+L N I I A L L LSKN+IS + L
Sbjct: 156 SLYLGNNKITDITVLSRLTKLDTLSLEDNQISDIVPLAGLTKLQNLYLSKNHISDLRALA 215
Query: 439 ELTRLRVLDL 448
L L VL+L
Sbjct: 216 GLKNLDVLEL 225
>pdb|1OTM|A Chain A, Calcium-Binding Mutant Of The Internalin B Lrr Domain
Length = 236
Score = 38.5 bits (88), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 32/77 (41%), Positives = 42/77 (54%), Gaps = 2/77 (2%)
Query: 417 LPRGLHILNLSKNNISTIEGLRELTRLRVLDLSYNRILRIGHGLASCSSLKELYLAGNKI 476
LP+ L L L N I+ I L LT+L L L N+I I LA + L+ LYL+ N I
Sbjct: 151 LPQ-LESLYLGNNKITDITVLSRLTKLDTLSLEDNQISDI-VPLAGLTKLQNLYLSKNHI 208
Query: 477 SEVEGLHRLLKLTVLDL 493
S++ L L L VL+L
Sbjct: 209 SDLRALAGLKNLDVLEL 225
Score = 35.8 bits (81), Expect = 0.073, Method: Compositional matrix adjust.
Identities = 21/51 (41%), Positives = 27/51 (52%)
Query: 458 HGLASCSSLKELYLAGNKISEVEGLHRLLKLTVLDLRFNKISTAKCLGQLA 508
+GL L+ LYL NKI+++ L RL KL L L N+IS L L
Sbjct: 146 NGLVHLPQLESLYLGNNKITDITVLSRLTKLDTLSLEDNQISDIVPLAGLT 196
Score = 31.2 bits (69), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 26/70 (37%), Positives = 34/70 (48%)
Query: 379 TVQLSNHGLVVIPFLSAFVSLKVLNLSGNAIVRITAGALPRGLHILNLSKNNISTIEGLR 438
++ L N+ + I LS L L+L N I I A L L LSKN+IS + L
Sbjct: 156 SLYLGNNKITDITVLSRLTKLDTLSLEDNQISDIVPLAGLTKLQNLYLSKNHISDLRALA 215
Query: 439 ELTRLRVLDL 448
L L VL+L
Sbjct: 216 GLKNLDVLEL 225
>pdb|4FMZ|A Chain A, Crystal Structure Of An Internalin (Inlf) From Listeria
Monocytogenes Str. 4b F2365 At 1.91 A Resolution
pdb|4FMZ|B Chain B, Crystal Structure Of An Internalin (Inlf) From Listeria
Monocytogenes Str. 4b F2365 At 1.91 A Resolution
Length = 347
Score = 38.1 bits (87), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 44/159 (27%), Positives = 75/159 (47%), Gaps = 5/159 (3%)
Query: 351 TAVKVDGKVTAGMEAVTKYISSLSASATTVQLSNHGLVVIPFLSAFVSLKVLNLSGNAIV 410
T + V G+ A ++ + +Y+++L + L+ + + I LS V L L + N I
Sbjct: 47 TKLVVAGEKVASIQGI-EYLTNLEY----LNLNGNQITDISPLSNLVKLTNLYIGTNKIT 101
Query: 411 RITAGALPRGLHILNLSKNNISTIEGLRELTRLRVLDLSYNRILRIGHGLASCSSLKELY 470
I+A L L L+++NIS I L LT+ L+L N L L++ + L L
Sbjct: 102 DISALQNLTNLRELYLNEDNISDISPLANLTKXYSLNLGANHNLSDLSPLSNXTGLNYLT 161
Query: 471 LAGNKISEVEGLHRLLKLTVLDLRFNKISTAKCLGQLAA 509
+ +K+ +V + L L L L +N+I L L +
Sbjct: 162 VTESKVKDVTPIANLTDLYSLSLNYNQIEDISPLASLTS 200
Score = 37.0 bits (84), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 44/151 (29%), Positives = 69/151 (45%), Gaps = 7/151 (4%)
Query: 383 SNHGLVVIPFLSAFVSLKVLNLSGNAIVRITAGALPRGLHILNLSKNNISTIEGLRELTR 442
+NH L + LS L L ++ + + +T A L+ L+L+ N I I L LT
Sbjct: 141 ANHNLSDLSPLSNXTGLNYLTVTESKVKDVTPIANLTDLYSLSLNYNQIEDISPLASLTS 200
Query: 443 LRVLDLSYNRILRIGHGLASCSSLKELYLAGNKISEVEGLHRLLKLTVLDLRFNKISTAK 502
L N+I I +A+ + L L + NKI+++ L L +LT L++ N+IS
Sbjct: 201 LHYFTAYVNQITDITP-VANXTRLNSLKIGNNKITDLSPLANLSQLTWLEIGTNQISDIN 259
Query: 503 C------LGQLAANYNSLQAISLEGNPAQKN 527
L L N + IS+ N +Q N
Sbjct: 260 AVKDLTKLKXLNVGSNQISDISVLNNLSQLN 290
Score = 35.0 bits (79), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 34/112 (30%), Positives = 55/112 (49%), Gaps = 3/112 (2%)
Query: 399 LKVLNLSGNAIVRITAGALPRGLHILNLSKNNISTIEGLRELTRLRVLDLSYNRILRIGH 458
L L + N I ++ A L L + N IS I +++LT+L+ L++ N+I I
Sbjct: 223 LNSLKIGNNKITDLSPLANLSQLTWLEIGTNQISDINAVKDLTKLKXLNVGSNQISDISV 282
Query: 459 GLASCSSLKELYLAGNKI--SEVEGLHRLLKLTVLDLRFNKISTAKCLGQLA 508
L + S L L+L N++ + E + L LT L L N I+ + L L+
Sbjct: 283 -LNNLSQLNSLFLNNNQLGNEDXEVIGGLTNLTTLFLSQNHITDIRPLASLS 333
>pdb|1D0B|A Chain A, Internalin B Leucine Rich Repeat Domain
Length = 213
Score = 38.1 bits (87), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 32/77 (41%), Positives = 42/77 (54%), Gaps = 2/77 (2%)
Query: 417 LPRGLHILNLSKNNISTIEGLRELTRLRVLDLSYNRILRIGHGLASCSSLKELYLAGNKI 476
LP+ L L L N I+ I L LT+L L L N+I I LA + L+ LYL+ N I
Sbjct: 128 LPQ-LESLYLGNNKITDITVLSRLTKLDTLSLEDNQISDIV-PLAGLTKLQNLYLSKNHI 185
Query: 477 SEVEGLHRLLKLTVLDL 493
S++ L L L VL+L
Sbjct: 186 SDLRALAGLKNLDVLEL 202
Score = 36.2 bits (82), Expect = 0.066, Method: Compositional matrix adjust.
Identities = 21/51 (41%), Positives = 27/51 (52%)
Query: 458 HGLASCSSLKELYLAGNKISEVEGLHRLLKLTVLDLRFNKISTAKCLGQLA 508
+GL L+ LYL NKI+++ L RL KL L L N+IS L L
Sbjct: 123 NGLVHLPQLESLYLGNNKITDITVLSRLTKLDTLSLEDNQISDIVPLAGLT 173
Score = 31.2 bits (69), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 26/70 (37%), Positives = 34/70 (48%)
Query: 379 TVQLSNHGLVVIPFLSAFVSLKVLNLSGNAIVRITAGALPRGLHILNLSKNNISTIEGLR 438
++ L N+ + I LS L L+L N I I A L L LSKN+IS + L
Sbjct: 133 SLYLGNNKITDITVLSRLTKLDTLSLEDNQISDIVPLAGLTKLQNLYLSKNHISDLRALA 192
Query: 439 ELTRLRVLDL 448
L L VL+L
Sbjct: 193 GLKNLDVLEL 202
>pdb|2A0Z|A Chain A, The Molecular Structure Of Toll-like Receptor 3 Ligand
Binding Domain
Length = 705
Score = 38.1 bits (87), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 35/97 (36%), Positives = 48/97 (49%), Gaps = 13/97 (13%)
Query: 386 GLVVIPFLS---AFVSLKVLNLSGNAIVRITAGALPRGLHILNLSKNNISTIE--GLREL 440
GL+ + +LS +F SL+ L + V + L HILNL+KN IS IE L
Sbjct: 356 GLINLKYLSLSNSFTSLRTL--TNETFVSLAHSPL----HILNLTKNKISKIESDAFSWL 409
Query: 441 TRLRVLDLSYNRILR--IGHGLASCSSLKELYLAGNK 475
L VLDL N I + G ++ E+YL+ NK
Sbjct: 410 GHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNK 446
>pdb|3ULU|A Chain A, Structure Of Quaternary Complex Of Human Tlr3ecd With
Three Fabs (Form1)
pdb|3ULV|A Chain A, Structure Of Quaternary Complex Of Human Tlr3ecd With
Three Fabs (Form2)
Length = 694
Score = 38.1 bits (87), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 35/97 (36%), Positives = 48/97 (49%), Gaps = 13/97 (13%)
Query: 386 GLVVIPFLS---AFVSLKVLNLSGNAIVRITAGALPRGLHILNLSKNNISTIE--GLREL 440
GL+ + +LS +F SL+ L + V + L HILNL+KN IS IE L
Sbjct: 361 GLINLKYLSLSNSFTSLRTL--TNETFVSLAHSPL----HILNLTKNKISKIESDAFSWL 414
Query: 441 TRLRVLDLSYNRILR--IGHGLASCSSLKELYLAGNK 475
L VLDL N I + G ++ E+YL+ NK
Sbjct: 415 GHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNK 451
>pdb|1M9S|A Chain A, Crystal Structure Of Internalin B (Inlb), A Listeria
Monocytogenes Virulence Protein Containing Sh3-Like
Domains
Length = 605
Score = 37.7 bits (86), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 43/121 (35%), Positives = 60/121 (49%), Gaps = 5/121 (4%)
Query: 402 LNLSGNAIVRITAGALPRGLHILNLSKNNISTIEGLRELTRLRVLDLSYNRILRIGHGLA 461
L L+GN + I + L L L +N I + L++L +L+ L L +N I I +GL
Sbjct: 70 LFLNGNKLTDIKPLTNLKNLGWLFLDENKIKDLSSLKDLKKLKSLSLEHNGISDI-NGLV 128
Query: 462 SCSSLKELYLAGNKISEVEGLHRLLKLTVLDLRFNKISTAKCLGQLAANYNSLQAISLEG 521
L+ LYL NKI+++ L RL KL L L N+IS L L LQ + L
Sbjct: 129 HLPQLESLYLGNNKITDITVLSRLTKLDTLSLEDNQISDIVPLAGLT----KLQNLYLSK 184
Query: 522 N 522
N
Sbjct: 185 N 185
Score = 37.7 bits (86), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 35/90 (38%), Positives = 45/90 (50%), Gaps = 3/90 (3%)
Query: 405 SGNAIVRITAGA-LPRGLHILNLSKNNISTIEGLRELTRLRVLDLSYNRILRIGHGLASC 463
N I I LP+ L L L N I+ I L LT+L L L N+I I LA
Sbjct: 117 EHNGISDINGLVHLPQ-LESLYLGNNKITDITVLSRLTKLDTLSLEDNQISDI-VPLAGL 174
Query: 464 SSLKELYLAGNKISEVEGLHRLLKLTVLDL 493
+ L+ LYL+ N IS++ L L L VL+L
Sbjct: 175 TKLQNLYLSKNHISDLRALAGLKNLDVLEL 204
Score = 33.5 bits (75), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 26/70 (37%), Positives = 34/70 (48%)
Query: 379 TVQLSNHGLVVIPFLSAFVSLKVLNLSGNAIVRITAGALPRGLHILNLSKNNISTIEGLR 438
++ L N+ + I LS L L+L N I I A L L LSKN+IS + L
Sbjct: 135 SLYLGNNKITDITVLSRLTKLDTLSLEDNQISDIVPLAGLTKLQNLYLSKNHISDLRALA 194
Query: 439 ELTRLRVLDL 448
L L VL+L
Sbjct: 195 GLKNLDVLEL 204
>pdb|1ZIW|A Chain A, Human Toll-Like Receptor 3 Extracellular Domain Structure
Length = 680
Score = 37.7 bits (86), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 35/97 (36%), Positives = 48/97 (49%), Gaps = 13/97 (13%)
Query: 386 GLVVIPFLS---AFVSLKVLNLSGNAIVRITAGALPRGLHILNLSKNNISTIE--GLREL 440
GL+ + +LS +F SL+ L + V + L HILNL+KN IS IE L
Sbjct: 351 GLINLKYLSLSNSFTSLRTL--TNETFVSLAHSPL----HILNLTKNKISKIESDAFSWL 404
Query: 441 TRLRVLDLSYNRILR--IGHGLASCSSLKELYLAGNK 475
L VLDL N I + G ++ E+YL+ NK
Sbjct: 405 GHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNK 441
>pdb|3O6N|A Chain A, Crystal Structure Of Apl1 Leucine-Rich Repeat Domain
Length = 390
Score = 34.7 bits (78), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 38/145 (26%), Positives = 68/145 (46%), Gaps = 10/145 (6%)
Query: 393 LSAFVSLKVLNLSGNAIVRITAGALPRGLHILNLSKNNISTIEGLRELTRLRVLDLSYNR 452
L+ ++++ L+ S N+I + G + L IL L NN++ L L +DLSYN
Sbjct: 201 LAIPIAVEELDASHNSI-NVVRGPVNVELTILKLQHNNLTDTAWLLNYPGLVEVDLSYNE 259
Query: 453 ILRIG-HGLASCSSLKELYLAGNKISEVEGLHR-LLKLTVLDLRFNKISTAK-------C 503
+ +I H L+ LY++ N++ + + + L VLDL N + +
Sbjct: 260 LEKIMYHPFVKMQRLERLYISNNRLVALNLYGQPIPTLKVLDLSHNHLLHVERNQPQFDR 319
Query: 504 LGQLAANYNSLQAISLEGNPAQKNV 528
L L ++NS+ + L + KN+
Sbjct: 320 LENLYLDHNSIVTLKLSTHHTLKNL 344
>pdb|3OJA|B Chain B, Crystal Structure Of Lrim1APL1C COMPLEX
Length = 597
Score = 34.7 bits (78), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 38/145 (26%), Positives = 68/145 (46%), Gaps = 10/145 (6%)
Query: 393 LSAFVSLKVLNLSGNAIVRITAGALPRGLHILNLSKNNISTIEGLRELTRLRVLDLSYNR 452
L+ ++++ L+ S N+I + G + L IL L NN++ L L +DLSYN
Sbjct: 207 LAIPIAVEELDASHNSI-NVVRGPVNVELTILKLQHNNLTDTAWLLNYPGLVEVDLSYNE 265
Query: 453 ILRIG-HGLASCSSLKELYLAGNKISEVEGLHR-LLKLTVLDLRFNKISTAK-------C 503
+ +I H L+ LY++ N++ + + + L VLDL N + +
Sbjct: 266 LEKIMYHPFVKMQRLERLYISNNRLVALNLYGQPIPTLKVLDLSHNHLLHVERNQPQFDR 325
Query: 504 LGQLAANYNSLQAISLEGNPAQKNV 528
L L ++NS+ + L + KN+
Sbjct: 326 LENLYLDHNSIVTLKLSTHHTLKNL 350
Score = 29.6 bits (65), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 27/107 (25%), Positives = 50/107 (46%), Gaps = 3/107 (2%)
Query: 373 LSASATTVQLSNHGLVVIPFLSAFVSLKVLNLSGNAIVRITAGALPR--GLHILNLSKNN 430
++ T ++L ++ L +L + L ++LS N + +I + L L +S N
Sbjct: 230 VNVELTILKLQHNNLTDTAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNR 289
Query: 431 ISTIEGL-RELTRLRVLDLSYNRILRIGHGLASCSSLKELYLAGNKI 476
+ + + + L+VLDLS+N +L + L+ LYL N I
Sbjct: 290 LVALNLYGQPIPTLKVLDLSHNHLLHVERNQPQFDRLENLYLDHNSI 336
>pdb|2Z7X|B Chain B, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
Length = 520
Score = 34.3 bits (77), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 27/77 (35%), Positives = 45/77 (58%), Gaps = 4/77 (5%)
Query: 423 ILNLSKNNISTI--EGLRELTRLRVLDLSYNRILRIGHGLASCSS-LKELYLAGNKISEV 479
ILN+S+N IS + + L++LR+L +S+NRI + + + L+ L L+ NK+ ++
Sbjct: 25 ILNISQNYISELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHNKLVKI 84
Query: 480 EGLHRLLKLTVLDLRFN 496
H + L LDL FN
Sbjct: 85 -SCHPTVNLKHLDLSFN 100
Score = 29.6 bits (65), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 22/79 (27%), Positives = 44/79 (55%), Gaps = 2/79 (2%)
Query: 398 SLKVLNLSGNAIVRITAGALPRGLHILNLSKNNISTI-EGLRELTRLRVLDLSYNRILRI 456
SL LN+S N + LP + +L+L N I +I + + +L L+ L+++ N++ +
Sbjct: 400 SLLSLNMSSNILTDTIFRCLPPRIKVLDLHSNKIKSIPKQVVKLEALQELNVASNQLKSV 459
Query: 457 GHGLAS-CSSLKELYLAGN 474
G+ +SL++++L N
Sbjct: 460 PDGIFDRLTSLQKIWLHTN 478
Score = 29.3 bits (64), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 23/62 (37%), Positives = 35/62 (56%), Gaps = 2/62 (3%)
Query: 419 RGLHILNLSKNNISTIEGLRELT-RLRVLDLSYNRILRIGHGLASCSSLKELYLAGNKIS 477
+ L LN+S +NI T R L R++VLDL N+I I + +L+EL +A N++
Sbjct: 399 KSLLSLNMS-SNILTDTIFRCLPPRIKVLDLHSNKIKSIPKQVVKLEALQELNVASNQLK 457
Query: 478 EV 479
V
Sbjct: 458 SV 459
>pdb|1NHR|A Chain A, An L40c Mutation Converts The Cysteine-Sulfenic Acid Redox
Centre In Enterococcal Nadh Peroxidase To A Disulfide
Length = 447
Score = 34.3 bits (77), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 25/91 (27%), Positives = 43/91 (47%), Gaps = 3/91 (3%)
Query: 412 ITAGALPRGLHILNLSKNNISTIEGLRELTRLR--VLDLSYNRILRIGHGLASCSSLKEL 469
I+ GA+P L I +NI + G + +L+ +D N ++ IG G + +
Sbjct: 109 ISPGAVPFELDIPGKDLDNIYLMRGRQWAIKLKQKTVDPEVNNVVVIGSGYIGIEAAEAF 168
Query: 470 YLAGNKISEVEGLHRLLKLTVLDLRFNKIST 500
AG K++ ++ L R L + LD F + T
Sbjct: 169 AKAGKKVTVIDILDRPLGV-YLDKEFTDVLT 198
>pdb|1NHQ|A Chain A, Crystallographic Analyses Of Nadh Peroxidase Cys42ala And
Cys42ser Mutants: Active Site Structure, Mechanistic
Implications, And An Unusual Environment Of Arg303
Length = 447
Score = 34.3 bits (77), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 25/91 (27%), Positives = 43/91 (47%), Gaps = 3/91 (3%)
Query: 412 ITAGALPRGLHILNLSKNNISTIEGLRELTRLR--VLDLSYNRILRIGHGLASCSSLKEL 469
I+ GA+P L I +NI + G + +L+ +D N ++ IG G + +
Sbjct: 109 ISPGAVPFELDIPGKDLDNIYLMRGRQWAIKLKQKTVDPEVNNVVVIGSGYIGIEAAEAF 168
Query: 470 YLAGNKISEVEGLHRLLKLTVLDLRFNKIST 500
AG K++ ++ L R L + LD F + T
Sbjct: 169 AKAGKKVTVIDILDRPLGV-YLDKEFTDVLT 198
>pdb|3T6Q|A Chain A, Crystal Structure Of Mouse Rp105MD-1 Complex
pdb|3T6Q|B Chain B, Crystal Structure Of Mouse Rp105MD-1 Complex
Length = 606
Score = 34.3 bits (77), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 48/157 (30%), Positives = 72/157 (45%), Gaps = 19/157 (12%)
Query: 399 LKVLNLSGNAIVRITAGALPRGLHIL--------NLSKNNISTIEGLRELTRLRVLDLSY 450
LKVLNLS ++++ I++ L GL L + K NI L+ L RL +L LS+
Sbjct: 427 LKVLNLS-HSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSF 485
Query: 451 NRILRIG-HGLASCSSLKELYLAGNKI--SEVEGLHRLLKLTVLDLRFNKISTAKCLGQL 507
+ I H S + + L+ N++ S +E L LK L+L N IS L L
Sbjct: 486 CDLSSIDQHAFTSLKMMNHVDLSHNRLTSSSIEALSH-LKGIYLNLASNHISII--LPSL 542
Query: 508 AANYNSLQAISLEGNPAQKNVGD----EQLKKNLQSL 540
+ + I+L NP + E K+N+Q L
Sbjct: 543 LPILSQQRTINLRQNPLDCTCSNIYFLEWYKENMQKL 579
Score = 32.3 bits (72), Expect = 0.93, Method: Compositional matrix adjust.
Identities = 33/128 (25%), Positives = 50/128 (39%), Gaps = 33/128 (25%)
Query: 422 HILNLSKNNISTIEGLRELTRLRVLDLSYNRILRIGHGLASCSSLKELYLAGNKIS---- 477
+ N+S N GL+EL DL+ + + GL S+LK+L L+ NK
Sbjct: 265 YFFNISSNTFHCFSGLQEL------DLTATHLSELPSGLVGLSTLKKLVLSANKFENLCQ 318
Query: 478 ------------EVEG-----------LHRLLKLTVLDLRFNKISTAKCLGQLAANYNSL 514
++G L L L LDL + I T+ C N + L
Sbjct: 319 ISASNFPSLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHL 378
Query: 515 QAISLEGN 522
Q+++L N
Sbjct: 379 QSLNLSYN 386
>pdb|1F8W|A Chain A, Crystal Structure Of Nadh Peroxidase Mutant: R303m
Length = 447
Score = 34.3 bits (77), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 25/91 (27%), Positives = 43/91 (47%), Gaps = 3/91 (3%)
Query: 412 ITAGALPRGLHILNLSKNNISTIEGLRELTRLR--VLDLSYNRILRIGHGLASCSSLKEL 469
I+ GA+P L I +NI + G + +L+ +D N ++ IG G + +
Sbjct: 109 ISPGAVPFELDIPGKDLDNIYLMRGRQWAIKLKQKTVDPEVNNVVVIGSGYIGIEAAEAF 168
Query: 470 YLAGNKISEVEGLHRLLKLTVLDLRFNKIST 500
AG K++ ++ L R L + LD F + T
Sbjct: 169 AKAGKKVTVIDILDRPLGV-YLDKEFTDVLT 198
>pdb|1NHS|A Chain A, An L40c Mutation Converts The Cysteine-Sulfenic Acid Redox
Centre In Enterococcal Nadh Peroxidase To A Disulfide
Length = 447
Score = 33.9 bits (76), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 25/91 (27%), Positives = 43/91 (47%), Gaps = 3/91 (3%)
Query: 412 ITAGALPRGLHILNLSKNNISTIEGLRELTRLR--VLDLSYNRILRIGHGLASCSSLKEL 469
I+ GA+P L I +NI + G + +L+ +D N ++ IG G + +
Sbjct: 109 ISPGAVPFELDIPGKDLDNIYLMRGRQWAIKLKQKTVDPEVNNVVVIGSGYIGIEAAEAF 168
Query: 470 YLAGNKISEVEGLHRLLKLTVLDLRFNKIST 500
AG K++ ++ L R L + LD F + T
Sbjct: 169 AKAGKKVTVIDILDRPLGV-YLDKEFTDVLT 198
>pdb|1JOA|A Chain A, Nadh Peroxidase With Cysteine-Sulfenic Acid
pdb|1NPX|A Chain A, Structure Of Nadh Peroxidase From Streptococcus Faecalis
10c1 Refined At 2.16 Angstroms Resolution
pdb|2NPX|A Chain A, Nadh Binding Site And Catalysis Of Nadh Peroxidase
Length = 447
Score = 33.9 bits (76), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 25/91 (27%), Positives = 43/91 (47%), Gaps = 3/91 (3%)
Query: 412 ITAGALPRGLHILNLSKNNISTIEGLRELTRLR--VLDLSYNRILRIGHGLASCSSLKEL 469
I+ GA+P L I +NI + G + +L+ +D N ++ IG G + +
Sbjct: 109 ISPGAVPFELDIPGKDLDNIYLMRGRQWAIKLKQKTVDPEVNNVVVIGSGYIGIEAAEAF 168
Query: 470 YLAGNKISEVEGLHRLLKLTVLDLRFNKIST 500
AG K++ ++ L R L + LD F + T
Sbjct: 169 AKAGKKVTVIDILDRPLGV-YLDKEFTDVLT 198
>pdb|1NHP|A Chain A, Crystallographic Analyses Of Nadh Peroxidase Cys42ala And
Cys42ser Mutants: Active Site Structure, Mechanistic
Implications, And An Unusual Environment Of Arg303
Length = 447
Score = 33.9 bits (76), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 25/91 (27%), Positives = 43/91 (47%), Gaps = 3/91 (3%)
Query: 412 ITAGALPRGLHILNLSKNNISTIEGLRELTRLR--VLDLSYNRILRIGHGLASCSSLKEL 469
I+ GA+P L I +NI + G + +L+ +D N ++ IG G + +
Sbjct: 109 ISPGAVPFELDIPGKDLDNIYLMRGRQWAIKLKQKTVDPEVNNVVVIGSGYIGIEAAEAF 168
Query: 470 YLAGNKISEVEGLHRLLKLTVLDLRFNKIST 500
AG K++ ++ L R L + LD F + T
Sbjct: 169 AKAGKKVTVIDILDRPLGV-YLDKEFTDVLT 198
>pdb|2ID5|A Chain A, Crystal Structure Of The Lingo-1 Ectodomain
pdb|2ID5|B Chain B, Crystal Structure Of The Lingo-1 Ectodomain
pdb|2ID5|C Chain C, Crystal Structure Of The Lingo-1 Ectodomain
pdb|2ID5|D Chain D, Crystal Structure Of The Lingo-1 Ectodomain
Length = 477
Score = 33.9 bits (76), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 29/89 (32%), Positives = 46/89 (51%), Gaps = 10/89 (11%)
Query: 402 LNLSGNAIVRITAGALPR-------GLHILNLSKNNISTIEG--LRELTRLRVLDLSYNR 452
LNL+ +I A+P L LNLS N ISTIEG L EL RL+ + L +
Sbjct: 224 LNLTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNPISTIEGSMLHELLRLQEIQLVGGQ 283
Query: 453 ILRI-GHGLASCSSLKELYLAGNKISEVE 480
+ + + + L+ L ++GN+++ +E
Sbjct: 284 LAVVEPYAFRGLNYLRVLNVSGNQLTTLE 312
>pdb|3ZYO|A Chain A, Crystal Structure Of The N-Terminal Leucine Rich Repeats
And Immunoglobulin Domain Of Netrin-G Ligand-3
Length = 411
Score = 33.1 bits (74), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 36/125 (28%), Positives = 55/125 (44%), Gaps = 5/125 (4%)
Query: 421 LHILNLSKNNISTIEGLRELTRLRVLDLSYNRILRIGHG-LASCSSLKELYLAGNKISEV 479
L LNL N+ I L L RL L+LS NR+ I G +SL++L+L +++ +
Sbjct: 158 LRYLNLGMCNLKDIPNLTALVRLEELELSGNRLDLIRPGSFQGLTSLRKLWLMHAQVATI 217
Query: 480 E--GLHRLLKLTVLDLRFNKISTAKCLGQLAANYNSLQAISLEGNPAQKNVGDEQLKKNL 537
E L L L+L N + + L + L+ + L NP N L L
Sbjct: 218 ERNAFDDLKSLEELNLSHNNLMSLP--HDLFTPLHRLERVHLNHNPWHCNCDVLWLSWWL 275
Query: 538 QSLLP 542
+ +P
Sbjct: 276 KETVP 280
>pdb|3LOM|A Chain A, Crystal Structure Of Geranyltransferase From Legionella
Pneumophila
pdb|3LOM|B Chain B, Crystal Structure Of Geranyltransferase From Legionella
Pneumophila
Length = 313
Score = 33.1 bits (74), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 35/121 (28%), Positives = 57/121 (47%), Gaps = 7/121 (5%)
Query: 320 DLQHCSPLEESDETSVSNDQVKRDP----KVLNGSTAVKV-DGKVTAGMEAVTKYISSLS 374
+L HC L D ++ ND ++R K + +TA+ V DG +E + +S L
Sbjct: 80 ELTHCYSLIHDDLPAMDNDDLRRGKPSCHKAFDEATAILVGDGMQALAIEVLLMRLSPLL 139
Query: 375 ASATTVQLSNHGLVVIPFLSAFVSLKVLNLSGNAIVRITAGALPRGLHILNLSKNNISTI 434
+A V ++ LV +S VS + L+LS A +T L R +H+L K ++
Sbjct: 140 PAAQVVAIT-QVLVNASGISGMVSGQSLDLSELAKSSVTEEQL-REIHLLKTGKLILACF 197
Query: 435 E 435
E
Sbjct: 198 E 198
>pdb|3ZYN|A Chain A, Crystal Structure Of The N-Terminal Leucine Rich Repeats
Of Netrin-G Ligand-3
pdb|3ZYN|B Chain B, Crystal Structure Of The N-Terminal Leucine Rich Repeats
Of Netrin-G Ligand-3
Length = 321
Score = 33.1 bits (74), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 36/125 (28%), Positives = 55/125 (44%), Gaps = 5/125 (4%)
Query: 421 LHILNLSKNNISTIEGLRELTRLRVLDLSYNRILRIGHG-LASCSSLKELYLAGNKISEV 479
L LNL N+ I L L RL L+LS NR+ I G +SL++L+L +++ +
Sbjct: 158 LRYLNLGMCNLKDIPNLTALVRLEELELSGNRLDLIRPGSFQGLTSLRKLWLMHAQVATI 217
Query: 480 E--GLHRLLKLTVLDLRFNKISTAKCLGQLAANYNSLQAISLEGNPAQKNVGDEQLKKNL 537
E L L L+L N + + L + L+ + L NP N L L
Sbjct: 218 ERNAFDDLKSLEELNLSHNNLMSLP--HDLFTPLHRLERVHLNHNPWHCNCDVLWLSWWL 275
Query: 538 QSLLP 542
+ +P
Sbjct: 276 KETVP 280
>pdb|1WWL|A Chain A, Crystal Structure Of Cd14
pdb|1WWL|B Chain B, Crystal Structure Of Cd14
Length = 312
Score = 33.1 bits (74), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 36/100 (36%), Positives = 49/100 (49%), Gaps = 27/100 (27%)
Query: 361 AGMEAVTKYISSLSASATTVQLSNHGLVVIPFLSAFVSLKVLNLSGNAIVRITAGA---- 416
AGME + S+L+A A V L+ L+LS N++ R AGA
Sbjct: 211 AGMETPSGVCSALAA-------------------ARVQLQGLDLSHNSL-RDAAGAPSCD 250
Query: 417 LPRGLHILNLSKNNISTI-EGLRELTRLRVLDLSYNRILR 455
P L+ LNLS + + +GL +L VLDLSYNR+ R
Sbjct: 251 WPSQLNSLNLSFTGLKQVPKGLP--AKLSVLDLSYNRLDR 288
>pdb|2O6S|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors B59
pdb|2O6S|B Chain B, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors B59
Length = 208
Score = 32.3 bits (72), Expect = 0.80, Method: Compositional matrix adjust.
Identities = 26/83 (31%), Positives = 43/83 (51%), Gaps = 11/83 (13%)
Query: 446 LDLSYNRILRIGHGLA-SCSSLKELYLAGNKISEVEG--LHRLLKLTVLDLRFNKIST-- 500
LDL N + + +G+ +SL +LYL GNK+ + ++L LT L+L N++ +
Sbjct: 33 LDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQSLP 92
Query: 501 ------AKCLGQLAANYNSLQAI 517
L +LA N N LQ++
Sbjct: 93 NGVFDKLTQLKELALNTNQLQSL 115
>pdb|3A79|B Chain B, Crystal Structure Of Tlr2-Tlr6-Pam2csk4 Complex
Length = 562
Score = 32.3 bits (72), Expect = 0.89, Method: Compositional matrix adjust.
Identities = 31/84 (36%), Positives = 45/84 (53%), Gaps = 6/84 (7%)
Query: 397 VSLKVLNLSGNAIVRITAGALPRGLHILNLSKNNISTIEGLRELT-RLRVLDLSYNRILR 455
VSL LN +A R A A + +LNLS N + T R L +++VLDL NRI+
Sbjct: 410 VSLNSLN--SHAYDRTCAWA--ESILVLNLSSNML-TGSVFRCLPPKVKVLDLHNNRIMS 464
Query: 456 IGHGLASCSSLKELYLAGNKISEV 479
I + +L+EL +A N++ V
Sbjct: 465 IPKDVTHLQALQELNVASNQLKSV 488
Score = 29.3 bits (64), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 28/83 (33%), Positives = 43/83 (51%), Gaps = 4/83 (4%)
Query: 417 LPRGLHILNLSKNNISTIE--GLRELTRLRVLDLSYNRILRIG-HGLASCSSLKELYLAG 473
LP L+LS+N+IS + + L+ LRVL LS+NRI + H L+ L ++
Sbjct: 50 LPPRTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVSH 109
Query: 474 NKISEVEGLHRLLKLTVLDLRFN 496
N++ + + L LDL FN
Sbjct: 110 NRLQNISCC-PMASLRHLDLSFN 131
>pdb|3RFS|A Chain A, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
pdb|3RFS|B Chain B, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
Length = 272
Score = 32.0 bits (71), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 28/90 (31%), Positives = 44/90 (48%), Gaps = 10/90 (11%)
Query: 400 KVLNLSGNAIVRITAGALPRG-------LHILNLSKNNISTIEG--LRELTRLRVLDLSY 450
K+ NL +V +LP G L LNL+ N + ++ +LT L LDLSY
Sbjct: 107 KLTNLKELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSY 166
Query: 451 NRILRIGHGLAS-CSSLKELYLAGNKISEV 479
N++ + G+ + LK+L L N++ V
Sbjct: 167 NQLQSLPEGVFDKLTQLKDLRLYQNQLKSV 196
>pdb|4ECO|A Chain A, Crystal Structure Of A Hypothetical Protein (Bacegg_03329)
From Bacteroides Eggerthii Dsm 20697 At 2.70 A
Resolution
pdb|4ECO|B Chain B, Crystal Structure Of A Hypothetical Protein (Bacegg_03329)
From Bacteroides Eggerthii Dsm 20697 At 2.70 A
Resolution
Length = 636
Score = 29.6 bits (65), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 21/64 (32%), Positives = 32/64 (50%), Gaps = 10/64 (15%)
Query: 446 LDLSYNRILRIGHGLASCSS-LKELYLAGNKISEV---------EGLHRLLKLTVLDLRF 495
++LS N+I + L S S L + L GN ++E+ E LT +DLRF
Sbjct: 438 INLSNNQISKFPKELFSTGSPLSSINLXGNXLTEIPKNSLKDENENFKNTYLLTSIDLRF 497
Query: 496 NKIS 499
NK++
Sbjct: 498 NKLT 501
>pdb|1D7Y|A Chain A, Crystal Structure Of Nadh-Dependent Ferredoxin Reductase,
Bpha4
pdb|1F3P|A Chain A, Ferredoxin Reductase (Bpha4)-Nadh Complex
pdb|2GQW|A Chain A, Crystal Structure Of Ferredoxin Reductase, Bpha4 (Oxidized
Form)
pdb|2GR0|A Chain A, Crystal Structure Of Ferredoxin Reductase, Bpha4 (oxidized
Form, Nad+ Complex)
pdb|2GR1|A Chain A, Crystal Structure Of Ferredoxin Reductase, Bpha4
(Hydroquinone)
pdb|2GR2|A Chain A, Crystal Structure Of Ferredoxin Reductase, Bpha4 (Oxidized
Form)
pdb|2YVF|A Chain A, Crystal Structure Of Ferredoxin Reductase Bpha4
(Hydroquinone)
pdb|2YVG|A Chain A, Crystal Structure Of Ferredoxin Reductase, Bpha4
(Blue-Semiquinone)
pdb|2YVJ|A Chain A, Crystal Structure Of The Ferredoxin-Ferredoxin Reductase
(Bpha3-Bpha4)complex
pdb|2YVJ|P Chain P, Crystal Structure Of The Ferredoxin-Ferredoxin Reductase
(Bpha3-Bpha4)complex
Length = 408
Score = 29.6 bits (65), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 25/108 (23%), Positives = 42/108 (38%), Gaps = 10/108 (9%)
Query: 412 ITAGALPRGLHILNLSKNNISTIEGLRELTRLRVLDLSYNRILRIGHGLASCSSLKELYL 471
+ GA PR L L + + T+ L + R++ +R+L +G G+
Sbjct: 107 LATGAAPRALPTLQGATMPVHTLRTLEDARRIQAGLRPQSRLLIVGGGVIGLELAATART 166
Query: 472 AGNKISEVEGLHRLLKLTVLDLRFNKISTAKCLGQLAANYNSLQAISL 519
AG +S VE RL+ + L A Y++ Q + L
Sbjct: 167 AGVHVSLVETQPRLMSR----------AAPATLADFVARYHAAQGVDL 204
>pdb|2GR3|A Chain A, Crystal Structure Of Ferredoxin Reductase, Bpha4 (Oxidized
Form)
Length = 408
Score = 29.3 bits (64), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 25/108 (23%), Positives = 42/108 (38%), Gaps = 10/108 (9%)
Query: 412 ITAGALPRGLHILNLSKNNISTIEGLRELTRLRVLDLSYNRILRIGHGLASCSSLKELYL 471
+ GA PR L L + + T+ L + R++ +R+L +G G+
Sbjct: 107 LATGAAPRALPTLQGATMPVHTLRTLEDARRIQAGLRPQSRLLIVGGGVIGLELAATART 166
Query: 472 AGNKISEVEGLHRLLKLTVLDLRFNKISTAKCLGQLAANYNSLQAISL 519
AG +S VE RL+ + L A Y++ Q + L
Sbjct: 167 AGVHVSLVETQPRLMSR----------AAPATLADFVARYHAAQGVDL 204
>pdb|3G06|A Chain A, The Salmonella Virulence Effector Ssph2 Functions As A
Novel E3 Ligase
Length = 622
Score = 29.3 bits (64), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 25/72 (34%), Positives = 40/72 (55%), Gaps = 7/72 (9%)
Query: 417 LPRGLHILNLSKNNISTIEGL-RELTRLRVLDLSYNRILRIGHGLASCSSLKELYLAGNK 475
LP GL L++S N ++++ L EL +L +YN R+ A S LKEL ++GN+
Sbjct: 179 LPSGLQELSVSDNQLASLPTLPSELYKL----WAYNN--RLTSLPALPSGLKELIVSGNR 232
Query: 476 ISEVEGLHRLLK 487
++ + L LK
Sbjct: 233 LTSLPVLPSELK 244
>pdb|2O6Q|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors A29
Length = 270
Score = 28.9 bits (63), Expect = 8.5, Method: Compositional matrix adjust.
Identities = 29/90 (32%), Positives = 42/90 (46%), Gaps = 10/90 (11%)
Query: 467 KELYLAGNKISEV--EGLHRLLKLTVLDLRFNKIST--------AKCLGQLAANYNSLQA 516
K+L L NK+S + + HRL KL +L L NK+ T K L L N LQA
Sbjct: 40 KKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTDNKLQA 99
Query: 517 ISLEGNPAQKNVGDEQLKKNLQSLLPHLVY 546
+ + N+ + +L +N LP V+
Sbjct: 100 LPIGVFDQLVNLAELRLDRNQLKSLPPRVF 129
>pdb|1G9U|A Chain A, Crystal Structure Of Yopm-leucine Rich Effector Protein
From Yersinia Pestis
pdb|1JL5|A Chain A, Novel Molecular Architecture Of Yopm-A Leucine-Rich
Effector Protein From Yersinia Pestis
Length = 454
Score = 28.9 bits (63), Expect = 9.3, Method: Compositional matrix adjust.
Identities = 50/213 (23%), Positives = 85/213 (39%), Gaps = 21/213 (9%)
Query: 368 KYISSLSASATTVQLSNHGLVVIPFLSAFVSLKVLNLSGNAIVRITAGALPRGLHILNLS 427
K +S L + +SN+ L +P L LK++++ N++ ++ LP L +
Sbjct: 124 KALSDLPPLLEYLGVSNNQLEKLPELQNSSFLKIIDVDNNSLKKL--PDLPPSLEFIAAG 181
Query: 428 KNNISTIEGLRELTRLRVLDLSYNRILRIGHGLASCSSLKELYLAGNKISEVEGLHRLLK 487
N + + L+ L L + N + ++ S S+ +AGN I +E L L
Sbjct: 182 NNQLEELPELQNLPFLTAIYADNNSLKKLPDLPLSLESI----VAGNNI--LEELPELQN 235
Query: 488 LTVLDLRFNKISTAKCLGQLAANYNSLQAISLEGN--------PAQKNVGD--EQLKKNL 537
L L + + K L L SL+A+++ N P D E + L
Sbjct: 236 LPFLTTIYADNNLLKTLPDLPP---SLEALNVRDNYLTDLPELPQSLTFLDVSENIFSGL 292
Query: 538 QSLLPHLVYFNWQPMKASTLKDASDRSVRLGIS 570
L P+L Y N + +L D L +S
Sbjct: 293 SELPPNLYYLNASSNEIRSLCDLPPSLEELNVS 325
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.313 0.130 0.374
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 19,135,108
Number of Sequences: 62578
Number of extensions: 788899
Number of successful extensions: 1669
Number of sequences better than 100.0: 86
Number of HSP's better than 100.0 without gapping: 37
Number of HSP's successfully gapped in prelim test: 49
Number of HSP's that attempted gapping in prelim test: 1406
Number of HSP's gapped (non-prelim): 196
length of query: 662
length of database: 14,973,337
effective HSP length: 105
effective length of query: 557
effective length of database: 8,402,647
effective search space: 4680274379
effective search space used: 4680274379
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 55 (25.8 bits)