Query 035577
Match_columns 662
No_of_seqs 613 out of 3376
Neff 6.8
Searched_HMMs 46136
Date Fri Mar 29 04:12:36 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/035577.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/035577hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4194 Membrane glycoprotein 99.8 5.8E-22 1.3E-26 215.5 2.5 252 282-543 178-470 (873)
2 KOG4194 Membrane glycoprotein 99.8 1.1E-21 2.4E-26 213.4 1.9 274 274-563 148-437 (873)
3 KOG0444 Cytoskeletal regulator 99.8 8.2E-21 1.8E-25 207.2 -4.5 280 273-563 53-360 (1255)
4 KOG0444 Cytoskeletal regulator 99.8 3.9E-20 8.5E-25 202.0 -3.1 263 271-553 99-373 (1255)
5 PLN00113 leucine-rich repeat r 99.8 1.2E-17 2.7E-22 202.7 18.2 262 273-555 91-369 (968)
6 PRK15387 E3 ubiquitin-protein 99.8 7.3E-18 1.6E-22 196.5 15.5 220 275-526 222-459 (788)
7 PLN00113 leucine-rich repeat r 99.7 6.5E-17 1.4E-21 196.5 18.7 264 273-555 116-393 (968)
8 PRK15387 E3 ubiquitin-protein 99.7 6.4E-17 1.4E-21 188.6 16.0 211 282-526 206-416 (788)
9 KOG0618 Serine/threonine phosp 99.7 2.7E-18 5.9E-23 195.6 -5.3 245 271-524 213-488 (1081)
10 KOG0472 Leucine-rich repeat pr 99.6 1.7E-18 3.8E-23 182.0 -10.1 194 357-560 97-293 (565)
11 PRK15370 E3 ubiquitin-protein 99.6 7.6E-15 1.6E-19 172.0 13.8 244 282-555 183-428 (754)
12 PRK15370 E3 ubiquitin-protein 99.6 4E-15 8.6E-20 174.3 11.3 225 276-526 200-429 (754)
13 KOG0472 Leucine-rich repeat pr 99.6 4.4E-18 9.6E-23 179.0 -12.3 231 282-526 50-289 (565)
14 PF14580 LRR_9: Leucine-rich r 99.6 1.9E-15 4.1E-20 147.4 6.3 155 404-563 4-161 (175)
15 KOG4237 Extracellular matrix p 99.6 3.2E-16 6.9E-21 165.0 0.8 251 282-540 72-374 (498)
16 KOG0532 Leucine-rich repeat (L 99.6 1.2E-15 2.5E-20 166.8 2.7 207 377-591 100-321 (722)
17 KOG0618 Serine/threonine phosp 99.5 2.2E-16 4.8E-21 180.2 -4.5 145 376-523 360-511 (1081)
18 KOG0617 Ras suppressor protein 99.5 2.5E-16 5.3E-21 149.7 -4.2 150 377-529 35-190 (264)
19 KOG0617 Ras suppressor protein 99.4 8.1E-15 1.7E-19 139.5 -4.2 163 388-560 24-191 (264)
20 PLN03210 Resistant to P. syrin 99.4 1.2E-11 2.7E-16 152.9 21.1 251 282-552 594-903 (1153)
21 PF14580 LRR_9: Leucine-rich r 99.4 3.5E-13 7.6E-18 131.6 5.8 140 381-520 3-148 (175)
22 KOG4237 Extracellular matrix p 99.4 9.8E-14 2.1E-18 146.5 0.7 196 361-564 53-344 (498)
23 cd00116 LRR_RI Leucine-rich re 99.3 1.5E-12 3.3E-17 137.4 6.1 178 377-557 83-293 (319)
24 KOG1259 Nischarin, modulator o 99.3 3.2E-13 6.9E-18 138.2 0.3 144 393-540 280-424 (490)
25 cd00116 LRR_RI Leucine-rich re 99.3 3.1E-12 6.7E-17 135.1 5.2 269 282-552 3-317 (319)
26 PLN03210 Resistant to P. syrin 99.3 6.7E-11 1.5E-15 146.4 17.5 232 273-523 632-904 (1153)
27 KOG3207 Beta-tubulin folding c 99.2 1.7E-12 3.7E-17 138.8 -1.7 215 347-565 145-377 (505)
28 KOG1259 Nischarin, modulator o 99.1 8.6E-12 1.9E-16 127.8 -1.6 125 377-502 286-415 (490)
29 COG4886 Leucine-rich repeat (L 99.1 7.4E-11 1.6E-15 129.3 5.3 149 377-529 142-294 (394)
30 KOG0532 Leucine-rich repeat (L 99.1 3.3E-12 7.1E-17 140.1 -5.6 171 377-559 77-251 (722)
31 COG4886 Leucine-rich repeat (L 99.0 7E-10 1.5E-14 121.6 7.4 172 376-558 117-293 (394)
32 KOG1859 Leucine-rich repeat pr 99.0 1.6E-11 3.5E-16 137.6 -6.7 179 340-527 103-294 (1096)
33 KOG0531 Protein phosphatase 1, 98.9 2.7E-10 5.9E-15 126.2 -0.1 235 284-529 79-322 (414)
34 KOG3207 Beta-tubulin folding c 98.9 2.7E-10 6E-15 122.1 -1.4 205 347-559 120-343 (505)
35 KOG0531 Protein phosphatase 1, 98.8 3.6E-10 7.7E-15 125.3 -1.0 148 377-526 97-246 (414)
36 KOG1909 Ran GTPase-activating 98.8 8E-10 1.7E-14 115.9 1.5 241 297-555 28-311 (382)
37 KOG2982 Uncharacterized conser 98.7 3E-09 6.4E-14 109.4 -0.1 222 347-570 70-307 (418)
38 KOG1909 Ran GTPase-activating 98.6 4.8E-08 1.1E-12 102.7 4.6 211 347-559 29-287 (382)
39 KOG1644 U2-associated snRNP A' 98.5 4.8E-08 1.1E-12 95.9 2.2 140 399-563 21-161 (233)
40 KOG2123 Uncharacterized conser 98.4 1.8E-08 4E-13 102.9 -2.9 119 439-560 17-135 (388)
41 PF13855 LRR_8: Leucine rich r 98.4 1.8E-07 3.9E-12 75.2 3.2 55 421-475 3-60 (61)
42 PLN03150 hypothetical protein; 98.4 6.8E-07 1.5E-11 104.2 8.8 108 420-529 419-532 (623)
43 PF13855 LRR_8: Leucine rich r 98.4 2E-07 4.3E-12 74.9 3.0 56 442-497 2-60 (61)
44 KOG1859 Leucine-rich repeat pr 98.3 7.7E-09 1.7E-13 116.5 -9.1 123 377-500 166-293 (1096)
45 PLN03150 hypothetical protein; 98.3 1.7E-06 3.6E-11 101.0 9.0 104 442-552 419-525 (623)
46 KOG1644 U2-associated snRNP A' 98.3 7.7E-07 1.7E-11 87.6 5.0 119 377-495 21-149 (233)
47 COG5238 RNA1 Ran GTPase-activa 98.1 7.8E-07 1.7E-11 90.9 1.2 247 298-560 29-321 (388)
48 PF12799 LRR_4: Leucine Rich r 98.0 8.8E-06 1.9E-10 61.3 3.9 39 442-480 2-40 (44)
49 KOG4579 Leucine-rich repeat (L 97.9 3.8E-07 8.2E-12 84.8 -4.4 106 421-529 55-163 (177)
50 KOG4658 Apoptotic ATPase [Sign 97.9 1.2E-05 2.6E-10 96.7 5.2 121 377-497 525-653 (889)
51 KOG4579 Leucine-rich repeat (L 97.9 4E-07 8.6E-12 84.7 -5.7 124 377-500 29-160 (177)
52 COG5238 RNA1 Ran GTPase-activa 97.9 2.4E-05 5.3E-10 80.2 6.6 206 347-553 29-283 (388)
53 KOG4658 Apoptotic ATPase [Sign 97.9 1.1E-05 2.3E-10 97.1 4.7 120 377-496 547-678 (889)
54 PRK15386 type III secretion pr 97.8 0.00011 2.4E-09 80.6 10.7 68 377-452 54-123 (426)
55 PF12799 LRR_4: Leucine Rich r 97.7 3.3E-05 7.2E-10 58.2 3.9 39 464-502 1-40 (44)
56 KOG2739 Leucine-rich acidic nu 97.7 3.3E-05 7.1E-10 79.0 4.3 114 442-560 44-161 (260)
57 KOG2982 Uncharacterized conser 97.5 2.7E-05 5.8E-10 80.9 1.1 201 349-556 46-263 (418)
58 PRK15386 type III secretion pr 97.4 0.00028 6.1E-09 77.6 7.3 75 394-477 49-125 (426)
59 KOG2739 Leucine-rich acidic nu 97.4 7.8E-05 1.7E-09 76.3 2.7 101 419-519 43-150 (260)
60 KOG3665 ZYG-1-like serine/thre 97.3 0.00017 3.8E-09 84.8 4.4 146 397-548 122-281 (699)
61 KOG3665 ZYG-1-like serine/thre 97.3 0.0002 4.4E-09 84.2 4.7 143 376-520 123-283 (699)
62 KOG2123 Uncharacterized conser 96.9 5.2E-05 1.1E-09 78.1 -4.3 81 396-476 18-100 (388)
63 KOG2120 SCF ubiquitin ligase, 96.9 9.6E-05 2.1E-09 76.8 -2.4 187 348-545 185-390 (419)
64 KOG2120 SCF ubiquitin ligase, 96.8 2.9E-05 6.3E-10 80.6 -7.3 175 375-555 185-376 (419)
65 PF13306 LRR_5: Leucine rich r 96.7 0.0044 9.5E-08 56.4 7.3 114 393-514 8-128 (129)
66 PF13306 LRR_5: Leucine rich r 96.0 0.022 4.7E-07 51.8 7.2 107 377-489 14-129 (129)
67 KOG4308 LRR-containing protein 94.3 0.0012 2.5E-08 74.7 -8.0 162 364-526 105-304 (478)
68 KOG3763 mRNA export factor TAP 94.2 0.039 8.5E-07 62.1 3.8 93 462-556 216-315 (585)
69 KOG4308 LRR-containing protein 94.1 0.0012 2.6E-08 74.6 -8.4 178 377-556 89-304 (478)
70 PF00560 LRR_1: Leucine Rich R 93.8 0.027 5.9E-07 35.8 0.9 21 442-462 1-21 (22)
71 KOG0473 Leucine-rich repeat pr 91.8 0.0039 8.5E-08 63.1 -7.7 87 436-525 37-124 (326)
72 TIGR00864 PCC polycystin catio 90.4 0.31 6.7E-06 64.3 5.2 48 492-541 1-48 (2740)
73 KOG0473 Leucine-rich repeat pr 89.3 0.0077 1.7E-07 61.1 -8.2 79 421-499 44-124 (326)
74 PF13504 LRR_7: Leucine rich r 89.2 0.24 5.2E-06 29.6 1.4 15 442-456 2-16 (17)
75 smart00370 LRR Leucine-rich re 88.4 0.31 6.6E-06 32.0 1.7 22 396-417 1-22 (26)
76 smart00369 LRR_TYP Leucine-ric 88.4 0.31 6.6E-06 32.0 1.7 22 396-417 1-22 (26)
77 PF13504 LRR_7: Leucine rich r 87.6 0.39 8.4E-06 28.7 1.6 12 399-410 3-14 (17)
78 PF00560 LRR_1: Leucine Rich R 85.4 0.42 9.2E-06 30.3 1.0 17 399-415 2-18 (22)
79 smart00370 LRR Leucine-rich re 83.1 0.9 1.9E-05 29.7 1.9 20 440-459 1-20 (26)
80 smart00369 LRR_TYP Leucine-ric 83.1 0.9 1.9E-05 29.7 1.9 20 440-459 1-20 (26)
81 KOG4341 F-box protein containi 76.8 0.76 1.6E-05 50.6 -0.2 15 182-196 73-87 (483)
82 KOG4341 F-box protein containi 76.3 0.24 5.3E-06 54.3 -4.0 14 511-524 400-413 (483)
83 KOG3763 mRNA export factor TAP 72.6 1.9 4.2E-05 49.0 1.7 59 419-478 218-284 (585)
84 KOG1947 Leucine rich repeat pr 70.6 5.6 0.00012 44.1 4.8 129 394-522 185-331 (482)
85 KOG3864 Uncharacterized conser 68.8 1.1 2.4E-05 44.9 -1.1 32 420-451 102-135 (221)
86 smart00364 LRR_BAC Leucine-ric 66.2 4.1 8.8E-05 27.3 1.5 16 442-457 3-18 (26)
87 smart00364 LRR_BAC Leucine-ric 66.0 3.7 8.1E-05 27.5 1.3 18 465-482 3-20 (26)
88 smart00365 LRR_SD22 Leucine-ri 65.4 5.1 0.00011 26.7 1.9 12 488-499 4-15 (26)
89 smart00365 LRR_SD22 Leucine-ri 63.4 5.9 0.00013 26.4 1.9 16 397-412 2-17 (26)
90 KOG3864 Uncharacterized conser 62.6 3.6 7.9E-05 41.4 1.2 100 442-545 102-207 (221)
91 KOG1947 Leucine rich repeat pr 59.7 6.9 0.00015 43.4 2.9 127 419-550 188-329 (482)
92 PF13516 LRR_6: Leucine Rich r 50.1 7.1 0.00015 24.9 0.6 15 486-500 2-16 (24)
93 smart00368 LRR_RI Leucine rich 37.1 24 0.00053 23.6 1.7 15 486-500 2-16 (28)
94 PF05725 FNIP: FNIP Repeat; I 27.9 81 0.0018 23.4 3.3 30 398-427 13-42 (44)
95 smart00446 LRRcap occurring C- 27.1 46 0.001 22.4 1.6 20 532-551 3-22 (26)
No 1
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.84 E-value=5.8e-22 Score=215.50 Aligned_cols=252 Identities=21% Similarity=0.221 Sum_probs=157.5
Q ss_pred cccCCCCCccCCC--CCCCCCCceeecCCccCCCcchhhhcCCCCCCCCcccCCCCCCCCccCCc----ccCCCCCceee
Q 035577 282 VMPDENSVKKLQG--ESLHEQWDKLPSKHFKIKRIKEWVNDLQHCSPLEESDETSVSNDQVKRDP----KVLNGSTAVKV 355 (662)
Q Consensus 282 L~ls~N~I~~L~~--~s~l~~L~~L~l~~~si~~L~~~~~~L~~l~~L~~L~~l~ls~n~L~~~p----~~l~~L~~L~l 355 (662)
|.++.|.|+.+.. |..+..|..|.+..|.++.++.. .++.|..|..+++..|.|.... ..+.+|+.|++
T Consensus 178 L~La~N~It~l~~~~F~~lnsL~tlkLsrNrittLp~r-----~Fk~L~~L~~LdLnrN~irive~ltFqgL~Sl~nlkl 252 (873)
T KOG4194|consen 178 LNLASNRITTLETGHFDSLNSLLTLKLSRNRITTLPQR-----SFKRLPKLESLDLNRNRIRIVEGLTFQGLPSLQNLKL 252 (873)
T ss_pred EeeccccccccccccccccchheeeecccCcccccCHH-----HhhhcchhhhhhccccceeeehhhhhcCchhhhhhhh
Confidence 6677777777766 66666777777777777766642 1222222333334444443331 12334444444
Q ss_pred CCccccchhhhHHHhhhccCCccEEEccCCCCCCCCC--CCCCCCCCEEEccCCCCcccCCCcCC--CCccEEEccCCCC
Q 035577 356 DGKVTAGMEAVTKYISSLSASATTVQLSNHGLVVIPF--LSAFVSLKVLNLSGNAIVRITAGALP--RGLHILNLSKNNI 431 (662)
Q Consensus 356 ~~~~~~~l~~l~~~l~~l~~sL~~L~Ls~N~L~~lp~--l~~L~~L~~L~Ls~N~L~~l~~~~~~--~~L~~L~Ls~N~L 431 (662)
-.+ ++..+....+.-...+++|+|+.|+++.+.. +-+|+.|+.|+|++|.|..|....+. ++|++|+|++|+|
T Consensus 253 qrN---~I~kL~DG~Fy~l~kme~l~L~~N~l~~vn~g~lfgLt~L~~L~lS~NaI~rih~d~WsftqkL~~LdLs~N~i 329 (873)
T KOG4194|consen 253 QRN---DISKLDDGAFYGLEKMEHLNLETNRLQAVNEGWLFGLTSLEQLDLSYNAIQRIHIDSWSFTQKLKELDLSSNRI 329 (873)
T ss_pred hhc---CcccccCcceeeecccceeecccchhhhhhcccccccchhhhhccchhhhheeecchhhhcccceeEecccccc
Confidence 333 2333333222222336777777777776653 67777777777777777766655444 7777777777777
Q ss_pred CCCc--CCCCCCCCCEEeCcCCCCcccccc-ccCCCCCcEEEcCCCCCCCc-----ccccCCCCCcEEECCCCccCcccc
Q 035577 432 STIE--GLRELTRLRVLDLSYNRILRIGHG-LASCSSLKELYLAGNKISEV-----EGLHRLLKLTVLDLRFNKISTAKC 503 (662)
Q Consensus 432 ~~lp--~l~~L~~L~~LdLs~N~Ls~Lp~~-l~~L~~L~~L~Ls~N~L~~l-----~~l~~L~~L~~LdLs~N~Ls~l~~ 503 (662)
+.++ .|..|..|++|+|++|.|+.|.++ |..+.+|++|||++|.|+.. ..|..+++|+.|.|.+|+|..++
T Consensus 330 ~~l~~~sf~~L~~Le~LnLs~Nsi~~l~e~af~~lssL~~LdLr~N~ls~~IEDaa~~f~gl~~LrkL~l~gNqlk~I~- 408 (873)
T KOG4194|consen 330 TRLDEGSFRVLSQLEELNLSHNSIDHLAEGAFVGLSSLHKLDLRSNELSWCIEDAAVAFNGLPSLRKLRLTGNQLKSIP- 408 (873)
T ss_pred ccCChhHHHHHHHhhhhcccccchHHHHhhHHHHhhhhhhhcCcCCeEEEEEecchhhhccchhhhheeecCceeeecc-
Confidence 7775 466777777777777777766655 66667777777777766543 24566667777777777776664
Q ss_pred chHhhhcCCCCcEEEccCCCCC-----------------------CCCChHHHHHHHHhhCcc
Q 035577 504 LGQLAANYNSLQAISLEGNPAQ-----------------------KNVGDEQLKKNLQSLLPH 543 (662)
Q Consensus 504 l~~~l~~l~~L~~L~Ls~N~l~-----------------------~~~~~~~l~~~l~~~l~~ 543 (662)
..+|..++.|++|+|.+|+|. |+|...++.+|+....++
T Consensus 409 -krAfsgl~~LE~LdL~~NaiaSIq~nAFe~m~Lk~Lv~nSssflCDCql~Wl~qWl~~~~lq 470 (873)
T KOG4194|consen 409 -KRAFSGLEALEHLDLGDNAIASIQPNAFEPMELKELVMNSSSFLCDCQLKWLAQWLYRRKLQ 470 (873)
T ss_pred -hhhhccCcccceecCCCCcceeecccccccchhhhhhhcccceEEeccHHHHHHHHHhcccc
Confidence 555666677777777766653 578888888998887665
No 2
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.83 E-value=1.1e-21 Score=213.39 Aligned_cols=274 Identities=22% Similarity=0.259 Sum_probs=224.7
Q ss_pred cccCcccccccCCCCCccCCC--CCCCCCCceeecCCccCCCcchhhhcCCCCCCCCcccCCCCCCCCccCCccc----C
Q 035577 274 YSALAKDWVMPDENSVKKLQG--ESLHEQWDKLPSKHFKIKRIKEWVNDLQHCSPLEESDETSVSNDQVKRDPKV----L 347 (662)
Q Consensus 274 l~~L~~~~L~ls~N~I~~L~~--~s~l~~L~~L~l~~~si~~L~~~~~~L~~l~~L~~L~~l~ls~n~L~~~p~~----l 347 (662)
+..+.. ++++.|.|..++. |+.-.++++|.+..|.|+.+. ..++..|..|-.+.++.|.+..+|.. +
T Consensus 148 l~alrs--lDLSrN~is~i~~~sfp~~~ni~~L~La~N~It~l~-----~~~F~~lnsL~tlkLsrNrittLp~r~Fk~L 220 (873)
T KOG4194|consen 148 LPALRS--LDLSRNLISEIPKPSFPAKVNIKKLNLASNRITTLE-----TGHFDSLNSLLTLKLSRNRITTLPQRSFKRL 220 (873)
T ss_pred Hhhhhh--hhhhhchhhcccCCCCCCCCCceEEeeccccccccc-----cccccccchheeeecccCcccccCHHHhhhc
Confidence 344555 8999999999988 666778999999999999886 34555555555677788888887743 6
Q ss_pred CCCCceeeCCccccchhhhHHHhhhccCCccEEEccCCCCCCCCC--CCCCCCCCEEEccCCCCcccCCCcCC--CCccE
Q 035577 348 NGSTAVKVDGKVTAGMEAVTKYISSLSASATTVQLSNHGLVVIPF--LSAFVSLKVLNLSGNAIVRITAGALP--RGLHI 423 (662)
Q Consensus 348 ~~L~~L~l~~~~~~~l~~l~~~l~~l~~sL~~L~Ls~N~L~~lp~--l~~L~~L~~L~Ls~N~L~~l~~~~~~--~~L~~ 423 (662)
..|+.|+|..+.+.-++.+ .+..++. |+.|.|..|+|..+.. |..+..+++|+|..|+++.+..+.+. ..|+.
T Consensus 221 ~~L~~LdLnrN~irive~l--tFqgL~S-l~nlklqrN~I~kL~DG~Fy~l~kme~l~L~~N~l~~vn~g~lfgLt~L~~ 297 (873)
T KOG4194|consen 221 PKLESLDLNRNRIRIVEGL--TFQGLPS-LQNLKLQRNDISKLDDGAFYGLEKMEHLNLETNRLQAVNEGWLFGLTSLEQ 297 (873)
T ss_pred chhhhhhccccceeeehhh--hhcCchh-hhhhhhhhcCcccccCcceeeecccceeecccchhhhhhcccccccchhhh
Confidence 6777777777665544332 3445554 8899999999999975 88999999999999999999877765 89999
Q ss_pred EEccCCCCCCC--cCCCCCCCCCEEeCcCCCCcccccc-ccCCCCCcEEEcCCCCCCCc--ccccCCCCCcEEECCCCcc
Q 035577 424 LNLSKNNISTI--EGLRELTRLRVLDLSYNRILRIGHG-LASCSSLKELYLAGNKISEV--EGLHRLLKLTVLDLRFNKI 498 (662)
Q Consensus 424 L~Ls~N~L~~l--p~l~~L~~L~~LdLs~N~Ls~Lp~~-l~~L~~L~~L~Ls~N~L~~l--~~l~~L~~L~~LdLs~N~L 498 (662)
|+|++|.|..+ .++...++|++|+|++|+|+.++++ |..|..|++|+|++|.|..+ ..|..+.+|+.|||++|.|
T Consensus 298 L~lS~NaI~rih~d~WsftqkL~~LdLs~N~i~~l~~~sf~~L~~Le~LnLs~Nsi~~l~e~af~~lssL~~LdLr~N~l 377 (873)
T KOG4194|consen 298 LDLSYNAIQRIHIDSWSFTQKLKELDLSSNRITRLDEGSFRVLSQLEELNLSHNSIDHLAEGAFVGLSSLHKLDLRSNEL 377 (873)
T ss_pred hccchhhhheeecchhhhcccceeEeccccccccCChhHHHHHHHhhhhcccccchHHHHhhHHHHhhhhhhhcCcCCeE
Confidence 99999999986 4788899999999999999999876 99999999999999999998 3788999999999999999
Q ss_pred Cc-cccchHhhhcCCCCcEEEccCCCCCCCCChHHHHHHHHhhCccCceeecCCCCCCcccccccc
Q 035577 499 ST-AKCLGQLAANYNSLQAISLEGNPAQKNVGDEQLKKNLQSLLPHLVYFNWQPMKASTLKDASDR 563 (662)
Q Consensus 499 s~-l~~l~~~l~~l~~L~~L~Ls~N~l~~~~~~~~l~~~l~~~l~~L~~Ld~~~~~~~~l~~~~~~ 563 (662)
+. +.+-...|..+++|+.|+|.||++.. +.+..+..++.|+.||+.++.+.+.+..++.
T Consensus 378 s~~IEDaa~~f~gl~~LrkL~l~gNqlk~------I~krAfsgl~~LE~LdL~~NaiaSIq~nAFe 437 (873)
T KOG4194|consen 378 SWCIEDAAVAFNGLPSLRKLRLTGNQLKS------IPKRAFSGLEALEHLDLGDNAIASIQPNAFE 437 (873)
T ss_pred EEEEecchhhhccchhhhheeecCceeee------cchhhhccCcccceecCCCCcceeecccccc
Confidence 86 34446678889999999999999965 3344567899999999999988777665553
No 3
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.77 E-value=8.2e-21 Score=207.22 Aligned_cols=280 Identities=21% Similarity=0.239 Sum_probs=205.7
Q ss_pred CcccCcccccccCCCCCccCCC-CCCCCCCceeecCCccCCC--cchhhhcCCCCCCCCcccCCCCCCCCccCCcccCCC
Q 035577 273 NYSALAKDWVMPDENSVKKLQG-ESLHEQWDKLPSKHFKIKR--IKEWVNDLQHCSPLEESDETSVSNDQVKRDPKVLNG 349 (662)
Q Consensus 273 ~l~~L~~~~L~ls~N~I~~L~~-~s~l~~L~~L~l~~~si~~--L~~~~~~L~~l~~L~~L~~l~ls~n~L~~~p~~l~~ 349 (662)
++.+|.. +.+..|.+.++.+ ++.++.|+.+.+.+|+++. +|. ++- .|+.|..++++-|++.+.|..+..
T Consensus 53 ~lqkLEH--Ls~~HN~L~~vhGELs~Lp~LRsv~~R~N~LKnsGiP~---diF---~l~dLt~lDLShNqL~EvP~~LE~ 124 (1255)
T KOG0444|consen 53 RLQKLEH--LSMAHNQLISVHGELSDLPRLRSVIVRDNNLKNSGIPT---DIF---RLKDLTILDLSHNQLREVPTNLEY 124 (1255)
T ss_pred HHhhhhh--hhhhhhhhHhhhhhhccchhhHHHhhhccccccCCCCc---hhc---ccccceeeecchhhhhhcchhhhh
Confidence 3444444 6677888888777 7888888888888888764 553 222 345555577888999888876654
Q ss_pred CCceeeCCccccchhhhHHHhhhccCCccEEEccCCCCCCCCC-CCCCCCCCEEEccCCCCcccCCCcCC--CCccEEEc
Q 035577 350 STAVKVDGKVTAGMEAVTKYISSLSASATTVQLSNHGLVVIPF-LSAFVSLKVLNLSGNAIVRITAGALP--RGLHILNL 426 (662)
Q Consensus 350 L~~L~l~~~~~~~l~~l~~~l~~l~~sL~~L~Ls~N~L~~lp~-l~~L~~L~~L~Ls~N~L~~l~~~~~~--~~L~~L~L 426 (662)
-+.+-+.+...+.|+.++..+.-.-..|-.|||++|++..+|. +..|.+|++|.|++|.+....-..+| .+|++|++
T Consensus 125 AKn~iVLNLS~N~IetIPn~lfinLtDLLfLDLS~NrLe~LPPQ~RRL~~LqtL~Ls~NPL~hfQLrQLPsmtsL~vLhm 204 (1255)
T KOG0444|consen 125 AKNSIVLNLSYNNIETIPNSLFINLTDLLFLDLSNNRLEMLPPQIRRLSMLQTLKLSNNPLNHFQLRQLPSMTSLSVLHM 204 (1255)
T ss_pred hcCcEEEEcccCccccCCchHHHhhHhHhhhccccchhhhcCHHHHHHhhhhhhhcCCChhhHHHHhcCccchhhhhhhc
Confidence 4443333333344444443333222236689999999999987 88899999999999988766655555 78899999
Q ss_pred cCCCCC--CCc-CCCCCCCCCEEeCcCCCCccccccccCCCCCcEEEcCCCCCCCcc-cccCCCCCcEEECCCCccCccc
Q 035577 427 SKNNIS--TIE-GLRELTRLRVLDLSYNRILRIGHGLASCSSLKELYLAGNKISEVE-GLHRLLKLTVLDLRFNKISTAK 502 (662)
Q Consensus 427 s~N~L~--~lp-~l~~L~~L~~LdLs~N~Ls~Lp~~l~~L~~L~~L~Ls~N~L~~l~-~l~~L~~L~~LdLs~N~Ls~l~ 502 (662)
++.+-+ .+| ++..|.+|..+|||.|.+..+|+.+.++++|+.|+|++|+|+.+. ......+|++|+|+.|+++.+
T Consensus 205 s~TqRTl~N~Ptsld~l~NL~dvDlS~N~Lp~vPecly~l~~LrrLNLS~N~iteL~~~~~~W~~lEtLNlSrNQLt~L- 283 (1255)
T KOG0444|consen 205 SNTQRTLDNIPTSLDDLHNLRDVDLSENNLPIVPECLYKLRNLRRLNLSGNKITELNMTEGEWENLETLNLSRNQLTVL- 283 (1255)
T ss_pred ccccchhhcCCCchhhhhhhhhccccccCCCcchHHHhhhhhhheeccCcCceeeeeccHHHHhhhhhhccccchhccc-
Confidence 887654 455 788899999999999999999999999999999999999999884 566778899999999999987
Q ss_pred cchHhhhcCCCCcEEEccCCCCCCC-CCh-H----------------HHHHHHHhhCccCceeecCCCCCCcccccccc
Q 035577 503 CLGQLAANYNSLQAISLEGNPAQKN-VGD-E----------------QLKKNLQSLLPHLVYFNWQPMKASTLKDASDR 563 (662)
Q Consensus 503 ~l~~~l~~l~~L~~L~Ls~N~l~~~-~~~-~----------------~l~~~l~~~l~~L~~Ld~~~~~~~~l~~~~~~ 563 (662)
|..++.+++|+.|++.+|+++-. +|. . .+...-.+.++.|+.|.+..+.+.+++++...
T Consensus 284 --P~avcKL~kL~kLy~n~NkL~FeGiPSGIGKL~~Levf~aanN~LElVPEglcRC~kL~kL~L~~NrLiTLPeaIHl 360 (1255)
T KOG0444|consen 284 --PDAVCKLTKLTKLYANNNKLTFEGIPSGIGKLIQLEVFHAANNKLELVPEGLCRCVKLQKLKLDHNRLITLPEAIHL 360 (1255)
T ss_pred --hHHHhhhHHHHHHHhccCcccccCCccchhhhhhhHHHHhhccccccCchhhhhhHHHHHhcccccceeechhhhhh
Confidence 77888999999999999988632 111 0 11122344577888888888888888776543
No 4
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.75 E-value=3.9e-20 Score=201.98 Aligned_cols=263 Identities=21% Similarity=0.250 Sum_probs=183.5
Q ss_pred ccCcccCcccccccCCCCCccCCC-CCCCCCCceeecCCccCCCcchhhhcCCCCCCCCcccCCCCCCCCccCCccc---
Q 035577 271 SCNYSALAKDWVMPDENSVKKLQG-ESLHEQWDKLPSKHFKIKRIKEWVNDLQHCSPLEESDETSVSNDQVKRDPKV--- 346 (662)
Q Consensus 271 ~~~l~~L~~~~L~ls~N~I~~L~~-~s~l~~L~~L~l~~~si~~L~~~~~~L~~l~~L~~L~~l~ls~n~L~~~p~~--- 346 (662)
..++.+|.. ++++.|.++..+. +..-.++-.|.+++|+|+.||.. -|-+|..|-.++++.|.+..+|..
T Consensus 99 iF~l~dLt~--lDLShNqL~EvP~~LE~AKn~iVLNLS~N~IetIPn~-----lfinLtDLLfLDLS~NrLe~LPPQ~RR 171 (1255)
T KOG0444|consen 99 IFRLKDLTI--LDLSHNQLREVPTNLEYAKNSIVLNLSYNNIETIPNS-----LFINLTDLLFLDLSNNRLEMLPPQIRR 171 (1255)
T ss_pred hccccccee--eecchhhhhhcchhhhhhcCcEEEEcccCccccCCch-----HHHhhHhHhhhccccchhhhcCHHHHH
Confidence 355677776 8888888888876 55556667888888888888742 233444455567777888777765
Q ss_pred CCCCCceeeCCccccchhhhHHHhhhccCCccEEEccCCCCC--CCCC-CCCCCCCCEEEccCCCCcccCCCcCC-CCcc
Q 035577 347 LNGSTAVKVDGKVTAGMEAVTKYISSLSASATTVQLSNHGLV--VIPF-LSAFVSLKVLNLSGNAIVRITAGALP-RGLH 422 (662)
Q Consensus 347 l~~L~~L~l~~~~~~~l~~l~~~l~~l~~sL~~L~Ls~N~L~--~lp~-l~~L~~L~~L~Ls~N~L~~l~~~~~~-~~L~ 422 (662)
+..|+.|+++++...-+. ...+..+. +|.+|.+++.+=+ .+|. +..+.+|..+||+.|++..+|...+. ++|+
T Consensus 172 L~~LqtL~Ls~NPL~hfQ--LrQLPsmt-sL~vLhms~TqRTl~N~Ptsld~l~NL~dvDlS~N~Lp~vPecly~l~~Lr 248 (1255)
T KOG0444|consen 172 LSMLQTLKLSNNPLNHFQ--LRQLPSMT-SLSVLHMSNTQRTLDNIPTSLDDLHNLRDVDLSENNLPIVPECLYKLRNLR 248 (1255)
T ss_pred HhhhhhhhcCCChhhHHH--HhcCccch-hhhhhhcccccchhhcCCCchhhhhhhhhccccccCCCcchHHHhhhhhhh
Confidence 566677777776543221 01122222 3667777776543 5664 77778888888888888777765555 7788
Q ss_pred EEEccCCCCCCCc-CCCCCCCCCEEeCcCCCCccccccccCCCCCcEEEcCCCCCC--Ccc-cccCCCCCcEEECCCCcc
Q 035577 423 ILNLSKNNISTIE-GLRELTRLRVLDLSYNRILRIGHGLASCSSLKELYLAGNKIS--EVE-GLHRLLKLTVLDLRFNKI 498 (662)
Q Consensus 423 ~L~Ls~N~L~~lp-~l~~L~~L~~LdLs~N~Ls~Lp~~l~~L~~L~~L~Ls~N~L~--~l~-~l~~L~~L~~LdLs~N~L 498 (662)
.|+|++|+|+.+. ......+|++|+||.|+++.+|..+..++.|+.|++.+|+++ ++| +++.+..|+++..++|.+
T Consensus 249 rLNLS~N~iteL~~~~~~W~~lEtLNlSrNQLt~LP~avcKL~kL~kLy~n~NkL~FeGiPSGIGKL~~Levf~aanN~L 328 (1255)
T KOG0444|consen 249 RLNLSGNKITELNMTEGEWENLETLNLSRNQLTVLPDAVCKLTKLTKLYANNNKLTFEGIPSGIGKLIQLEVFHAANNKL 328 (1255)
T ss_pred eeccCcCceeeeeccHHHHhhhhhhccccchhccchHHHhhhHHHHHHHhccCcccccCCccchhhhhhhHHHHhhcccc
Confidence 8888888888775 566667788888888888888877888888888888888765 555 677888888888888877
Q ss_pred CccccchHhhhcCCCCcEEEccCCCCCCCCChHHHHHHHHhhCccCceeecCCCC
Q 035577 499 STAKCLGQLAANYNSLQAISLEGNPAQKNVGDEQLKKNLQSLLPHLVYFNWQPMK 553 (662)
Q Consensus 499 s~l~~l~~~l~~l~~L~~L~Ls~N~l~~~~~~~~l~~~l~~~l~~L~~Ld~~~~~ 553 (662)
.-+ |+.++.+.+|+.|.|+.|.+.... .-+..++.|..||+..+.
T Consensus 329 ElV---PEglcRC~kL~kL~L~~NrLiTLP-------eaIHlL~~l~vLDlreNp 373 (1255)
T KOG0444|consen 329 ELV---PEGLCRCVKLQKLKLDHNRLITLP-------EAIHLLPDLKVLDLRENP 373 (1255)
T ss_pred ccC---chhhhhhHHHHHhcccccceeech-------hhhhhcCCcceeeccCCc
Confidence 765 666777888888888888775421 234567778888877654
No 5
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.75 E-value=1.2e-17 Score=202.73 Aligned_cols=262 Identities=20% Similarity=0.222 Sum_probs=168.3
Q ss_pred CcccCcccccccCCCCCc-cCCC--CCCCCCCceeecCCccCCC-cchhhhcCCCCCCCCcccCCCCCCCCcc-CCc---
Q 035577 273 NYSALAKDWVMPDENSVK-KLQG--ESLHEQWDKLPSKHFKIKR-IKEWVNDLQHCSPLEESDETSVSNDQVK-RDP--- 344 (662)
Q Consensus 273 ~l~~L~~~~L~ls~N~I~-~L~~--~s~l~~L~~L~l~~~si~~-L~~~~~~L~~l~~L~~L~~l~ls~n~L~-~~p--- 344 (662)
.+..|.. ++++.|.+. .++. +..+.+|+.|++.+|.+.. ++. ..+..|+ .++++.+.+. ..|
T Consensus 91 ~l~~L~~--L~Ls~n~~~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~p~-----~~l~~L~---~L~Ls~n~~~~~~p~~~ 160 (968)
T PLN00113 91 RLPYIQT--INLSNNQLSGPIPDDIFTTSSSLRYLNLSNNNFTGSIPR-----GSIPNLE---TLDLSNNMLSGEIPNDI 160 (968)
T ss_pred CCCCCCE--EECCCCccCCcCChHHhccCCCCCEEECcCCccccccCc-----cccCCCC---EEECcCCcccccCChHH
Confidence 3455555 666777665 4444 3466777777777776654 221 1223333 3334444443 222
Q ss_pred ccCCCCCceeeCCccccchhhhHHHhhhccCCccEEEccCCCCC-CCCC-CCCCCCCCEEEccCCCCcccCCCcCC--CC
Q 035577 345 KVLNGSTAVKVDGKVTAGMEAVTKYISSLSASATTVQLSNHGLV-VIPF-LSAFVSLKVLNLSGNAIVRITAGALP--RG 420 (662)
Q Consensus 345 ~~l~~L~~L~l~~~~~~~l~~l~~~l~~l~~sL~~L~Ls~N~L~-~lp~-l~~L~~L~~L~Ls~N~L~~l~~~~~~--~~ 420 (662)
..+.+|+.|++.++.... .++..+..+.. |++|+|++|.+. .+|. +..+++|++|+|++|.+....+..+. ++
T Consensus 161 ~~l~~L~~L~L~~n~l~~--~~p~~~~~l~~-L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~ 237 (968)
T PLN00113 161 GSFSSLKVLDLGGNVLVG--KIPNSLTNLTS-LEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYEIGGLTS 237 (968)
T ss_pred hcCCCCCEEECccCcccc--cCChhhhhCcC-CCeeeccCCCCcCcCChHHcCcCCccEEECcCCccCCcCChhHhcCCC
Confidence 235666777776654321 23344445554 777888777776 4454 77777888888887777643333333 67
Q ss_pred ccEEEccCCCCCC-Cc-CCCCCCCCCEEeCcCCCCc-cccccccCCCCCcEEEcCCCCCCCc-c-cccCCCCCcEEECCC
Q 035577 421 LHILNLSKNNIST-IE-GLRELTRLRVLDLSYNRIL-RIGHGLASCSSLKELYLAGNKISEV-E-GLHRLLKLTVLDLRF 495 (662)
Q Consensus 421 L~~L~Ls~N~L~~-lp-~l~~L~~L~~LdLs~N~Ls-~Lp~~l~~L~~L~~L~Ls~N~L~~l-~-~l~~L~~L~~LdLs~ 495 (662)
|++|+|++|.++. +| .+..+++|++|+|++|.++ .+|..+..+++|+.|+|++|.+.+. | .+..+++|+.|++++
T Consensus 238 L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~~ 317 (968)
T PLN00113 238 LNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLSGEIPELVIQLQNLEILHLFS 317 (968)
T ss_pred CCEEECcCceeccccChhHhCCCCCCEEECcCCeeeccCchhHhhccCcCEEECcCCeeccCCChhHcCCCCCcEEECCC
Confidence 8888888887764 34 5777788888888888776 5666777788888888888877654 3 567778888888888
Q ss_pred CccCccccchHhhhcCCCCcEEEccCCCCCCCCChHHHHHHHHhhCccCceeecCCCCCC
Q 035577 496 NKISTAKCLGQLAANYNSLQAISLEGNPAQKNVGDEQLKKNLQSLLPHLVYFNWQPMKAS 555 (662)
Q Consensus 496 N~Ls~l~~l~~~l~~l~~L~~L~Ls~N~l~~~~~~~~l~~~l~~~l~~L~~Ld~~~~~~~ 555 (662)
|.+.+. ++..+..+++|+.|+|++|.+.+.++. ....+++|+.|++..+.+.
T Consensus 318 n~~~~~--~~~~~~~l~~L~~L~L~~n~l~~~~p~------~l~~~~~L~~L~Ls~n~l~ 369 (968)
T PLN00113 318 NNFTGK--IPVALTSLPRLQVLQLWSNKFSGEIPK------NLGKHNNLTVLDLSTNNLT 369 (968)
T ss_pred CccCCc--CChhHhcCCCCCEEECcCCCCcCcCCh------HHhCCCCCcEEECCCCeeE
Confidence 887765 366677788888888888888776553 2345678888888877654
No 6
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.75 E-value=7.3e-18 Score=196.46 Aligned_cols=220 Identities=21% Similarity=0.278 Sum_probs=118.0
Q ss_pred ccCcccccccCCCCCccCCCCCCCCCCceeecCCccCCCcchhhhcCCCCCCCCcccCCCCCCCCccCCcccCCCCCcee
Q 035577 275 SALAKDWVMPDENSVKKLQGESLHEQWDKLPSKHFKIKRIKEWVNDLQHCSPLEESDETSVSNDQVKRDPKVLNGSTAVK 354 (662)
Q Consensus 275 ~~L~~~~L~ls~N~I~~L~~~s~l~~L~~L~l~~~si~~L~~~~~~L~~l~~L~~L~~l~ls~n~L~~~p~~l~~L~~L~ 354 (662)
..+.. |.+..|.++.|+.. +++|+.|++.+|.++.++.++. .|. .+.+..|.+..+|..+.+|+.|+
T Consensus 222 ~~L~~--L~L~~N~Lt~LP~l--p~~Lk~LdLs~N~LtsLP~lp~------sL~---~L~Ls~N~L~~Lp~lp~~L~~L~ 288 (788)
T PRK15387 222 AHITT--LVIPDNNLTSLPAL--PPELRTLEVSGNQLTSLPVLPP------GLL---ELSIFSNPLTHLPALPSGLCKLW 288 (788)
T ss_pred cCCCE--EEccCCcCCCCCCC--CCCCcEEEecCCccCcccCccc------ccc---eeeccCCchhhhhhchhhcCEEE
Confidence 34554 78888999988763 5788899999998888875422 222 22333444444444445555555
Q ss_pred eCCccccchhhhHHHhhhccCCccEEEccCCCCCCCCCCC------------------CCCCCCEEEccCCCCcccCCCc
Q 035577 355 VDGKVTAGMEAVTKYISSLSASATTVQLSNHGLVVIPFLS------------------AFVSLKVLNLSGNAIVRITAGA 416 (662)
Q Consensus 355 l~~~~~~~l~~l~~~l~~l~~sL~~L~Ls~N~L~~lp~l~------------------~L~~L~~L~Ls~N~L~~l~~~~ 416 (662)
+.++.+..+.. .+..|+.|+|++|.|+.+|.+. ...+|++|+|++|+|+.+|.
T Consensus 289 Ls~N~Lt~LP~-------~p~~L~~LdLS~N~L~~Lp~lp~~L~~L~Ls~N~L~~LP~lp~~Lq~LdLS~N~Ls~LP~-- 359 (788)
T PRK15387 289 IFGNQLTSLPV-------LPPGLQELSVSDNQLASLPALPSELCKLWAYNNQLTSLPTLPSGLQELSVSDNQLASLPT-- 359 (788)
T ss_pred CcCCccccccc-------cccccceeECCCCccccCCCCcccccccccccCccccccccccccceEecCCCccCCCCC--
Confidence 55543333221 1223555555555555554311 01245555555555554442
Q ss_pred CCCCccEEEccCCCCCCCcCCCCCCCCCEEeCcCCCCccccccccCCCCCcEEEcCCCCCCCcccccCCCCCcEEECCCC
Q 035577 417 LPRGLHILNLSKNNISTIEGLRELTRLRVLDLSYNRILRIGHGLASCSSLKELYLAGNKISEVEGLHRLLKLTVLDLRFN 496 (662)
Q Consensus 417 ~~~~L~~L~Ls~N~L~~lp~l~~L~~L~~LdLs~N~Ls~Lp~~l~~L~~L~~L~Ls~N~L~~l~~l~~L~~L~~LdLs~N 496 (662)
++.+|+.|++++|+|+.+|.+ ..+|+.|+|++|.|+.+|.. ..+|+.|++++|+|+.+|.+ +.+|+.|+|++|
T Consensus 360 lp~~L~~L~Ls~N~L~~LP~l--~~~L~~LdLs~N~Lt~LP~l---~s~L~~LdLS~N~LssIP~l--~~~L~~L~Ls~N 432 (788)
T PRK15387 360 LPSELYKLWAYNNRLTSLPAL--PSGLKELIVSGNRLTSLPVL---PSELKELMVSGNRLTSLPML--PSGLLSLSVYRN 432 (788)
T ss_pred CCcccceehhhccccccCccc--ccccceEEecCCcccCCCCc---ccCCCEEEccCCcCCCCCcc--hhhhhhhhhccC
Confidence 234455555555555554432 23455556666555555532 23555666666666555532 234555666666
Q ss_pred ccCccccchHhhhcCCCCcEEEccCCCCCC
Q 035577 497 KISTAKCLGQLAANYNSLQAISLEGNPAQK 526 (662)
Q Consensus 497 ~Ls~l~~l~~~l~~l~~L~~L~Ls~N~l~~ 526 (662)
+|+.+ |..+..+++|+.|+|++|+|++
T Consensus 433 qLt~L---P~sl~~L~~L~~LdLs~N~Ls~ 459 (788)
T PRK15387 433 QLTRL---PESLIHLSSETTVNLEGNPLSE 459 (788)
T ss_pred ccccc---ChHHhhccCCCeEECCCCCCCc
Confidence 66644 4445566666666666666665
No 7
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.72 E-value=6.5e-17 Score=196.46 Aligned_cols=264 Identities=20% Similarity=0.211 Sum_probs=181.8
Q ss_pred CcccCcccccccCCCCCccCCCCCCCCCCceeecCCccCCC-cchhhhcCCCCCCCCcccCCCCCCCCcc-CCc---ccC
Q 035577 273 NYSALAKDWVMPDENSVKKLQGESLHEQWDKLPSKHFKIKR-IKEWVNDLQHCSPLEESDETSVSNDQVK-RDP---KVL 347 (662)
Q Consensus 273 ~l~~L~~~~L~ls~N~I~~L~~~s~l~~L~~L~l~~~si~~-L~~~~~~L~~l~~L~~L~~l~ls~n~L~-~~p---~~l 347 (662)
.+..|.. ++++.|.+....+...+.+|+.|++.+|.+.. ++.. +..+..|+.| +++.+.+. ..| ..+
T Consensus 116 ~l~~L~~--L~Ls~n~l~~~~p~~~l~~L~~L~Ls~n~~~~~~p~~---~~~l~~L~~L---~L~~n~l~~~~p~~~~~l 187 (968)
T PLN00113 116 TSSSLRY--LNLSNNNFTGSIPRGSIPNLETLDLSNNMLSGEIPND---IGSFSSLKVL---DLGGNVLVGKIPNSLTNL 187 (968)
T ss_pred cCCCCCE--EECcCCccccccCccccCCCCEEECcCCcccccCChH---HhcCCCCCEE---ECccCcccccCChhhhhC
Confidence 4456665 77788877654444567788888888887764 4432 3444444443 33444432 222 235
Q ss_pred CCCCceeeCCccccchhhhHHHhhhccCCccEEEccCCCCC-CCCC-CCCCCCCCEEEccCCCCcccCCCcCC--CCccE
Q 035577 348 NGSTAVKVDGKVTAGMEAVTKYISSLSASATTVQLSNHGLV-VIPF-LSAFVSLKVLNLSGNAIVRITAGALP--RGLHI 423 (662)
Q Consensus 348 ~~L~~L~l~~~~~~~l~~l~~~l~~l~~sL~~L~Ls~N~L~-~lp~-l~~L~~L~~L~Ls~N~L~~l~~~~~~--~~L~~ 423 (662)
.+|+.|++.++.... .++..+..+.. |+.|+|++|.+. .+|. +..+++|++|+|++|.++...+..+. ++|++
T Consensus 188 ~~L~~L~L~~n~l~~--~~p~~l~~l~~-L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~ 264 (968)
T PLN00113 188 TSLEFLTLASNQLVG--QIPRELGQMKS-LKWIYLGYNNLSGEIPYEIGGLTSLNHLDLVYNNLTGPIPSSLGNLKNLQY 264 (968)
T ss_pred cCCCeeeccCCCCcC--cCChHHcCcCC-ccEEECcCCccCCcCChhHhcCCCCCEEECcCceeccccChhHhCCCCCCE
Confidence 677777777654321 23445555554 888888888887 5565 78888888888888888644333333 68888
Q ss_pred EEccCCCCCC-Cc-CCCCCCCCCEEeCcCCCCc-cccccccCCCCCcEEEcCCCCCCCc-c-cccCCCCCcEEECCCCcc
Q 035577 424 LNLSKNNIST-IE-GLRELTRLRVLDLSYNRIL-RIGHGLASCSSLKELYLAGNKISEV-E-GLHRLLKLTVLDLRFNKI 498 (662)
Q Consensus 424 L~Ls~N~L~~-lp-~l~~L~~L~~LdLs~N~Ls-~Lp~~l~~L~~L~~L~Ls~N~L~~l-~-~l~~L~~L~~LdLs~N~L 498 (662)
|+|++|.+.. +| .+..+++|++|+|++|.+. .+|..+..+++|+.|++++|.+.+. + .+..+++|+.|+|++|.+
T Consensus 265 L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l 344 (968)
T PLN00113 265 LFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLSGEIPELVIQLQNLEILHLFSNNFTGKIPVALTSLPRLQVLQLWSNKF 344 (968)
T ss_pred EECcCCeeeccCchhHhhccCcCEEECcCCeeccCCChhHcCCCCCcEEECCCCccCCcCChhHhcCCCCCEEECcCCCC
Confidence 8888888874 34 6778888888888888887 5677788888888888888888754 3 577888888888888888
Q ss_pred CccccchHhhhcCCCCcEEEccCCCCCCCCChHHHHHHHHhhCccCceeecCCCCCC
Q 035577 499 STAKCLGQLAANYNSLQAISLEGNPAQKNVGDEQLKKNLQSLLPHLVYFNWQPMKAS 555 (662)
Q Consensus 499 s~l~~l~~~l~~l~~L~~L~Ls~N~l~~~~~~~~l~~~l~~~l~~L~~Ld~~~~~~~ 555 (662)
++. ++..+..+++|+.|+|++|.+.+.++.. ...+++|+.|++..+.+.
T Consensus 345 ~~~--~p~~l~~~~~L~~L~Ls~n~l~~~~p~~------~~~~~~L~~L~l~~n~l~ 393 (968)
T PLN00113 345 SGE--IPKNLGKHNNLTVLDLSTNNLTGEIPEG------LCSSGNLFKLILFSNSLE 393 (968)
T ss_pred cCc--CChHHhCCCCCcEEECCCCeeEeeCChh------HhCcCCCCEEECcCCEec
Confidence 754 3666778888888888888887765531 234677888888776553
No 8
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.71 E-value=6.4e-17 Score=188.63 Aligned_cols=211 Identities=19% Similarity=0.227 Sum_probs=151.6
Q ss_pred cccCCCCCccCCCCCCCCCCceeecCCccCCCcchhhhcCCCCCCCCcccCCCCCCCCccCCcccCCCCCceeeCCcccc
Q 035577 282 VMPDENSVKKLQGESLHEQWDKLPSKHFKIKRIKEWVNDLQHCSPLEESDETSVSNDQVKRDPKVLNGSTAVKVDGKVTA 361 (662)
Q Consensus 282 L~ls~N~I~~L~~~s~l~~L~~L~l~~~si~~L~~~~~~L~~l~~L~~L~~l~ls~n~L~~~p~~l~~L~~L~l~~~~~~ 361 (662)
++++.+.++.+|.. ...+++.|.+.+|.++.++.. ... |..++++.|.|..+|..+.+|+.|++.++.+.
T Consensus 206 LdLs~~~LtsLP~~-l~~~L~~L~L~~N~Lt~LP~l------p~~---Lk~LdLs~N~LtsLP~lp~sL~~L~Ls~N~L~ 275 (788)
T PRK15387 206 LNVGESGLTTLPDC-LPAHITTLVIPDNNLTSLPAL------PPE---LRTLEVSGNQLTSLPVLPPGLLELSIFSNPLT 275 (788)
T ss_pred EEcCCCCCCcCCcc-hhcCCCEEEccCCcCCCCCCC------CCC---CcEEEecCCccCcccCcccccceeeccCCchh
Confidence 67788888888772 235799999999999988753 233 44455677888888777788999999887655
Q ss_pred chhhhHHHhhhccCCccEEEccCCCCCCCCCCCCCCCCCEEEccCCCCcccCCCcCCCCccEEEccCCCCCCCcCCCCCC
Q 035577 362 GMEAVTKYISSLSASATTVQLSNHGLVVIPFLSAFVSLKVLNLSGNAIVRITAGALPRGLHILNLSKNNISTIEGLRELT 441 (662)
Q Consensus 362 ~l~~l~~~l~~l~~sL~~L~Ls~N~L~~lp~l~~L~~L~~L~Ls~N~L~~l~~~~~~~~L~~L~Ls~N~L~~lp~l~~L~ 441 (662)
.+.. ++..|+.|+|++|+|+.+|. .+++|+.|+|++|.|+.++. ++..|+.|++++|+|+.+|.+. .
T Consensus 276 ~Lp~-------lp~~L~~L~Ls~N~Lt~LP~--~p~~L~~LdLS~N~L~~Lp~--lp~~L~~L~Ls~N~L~~LP~lp--~ 342 (788)
T PRK15387 276 HLPA-------LPSGLCKLWIFGNQLTSLPV--LPPGLQELSVSDNQLASLPA--LPSELCKLWAYNNQLTSLPTLP--S 342 (788)
T ss_pred hhhh-------chhhcCEEECcCCccccccc--cccccceeECCCCccccCCC--CcccccccccccCccccccccc--c
Confidence 4433 33458899999999999986 35789999999999998874 4567888888888888877532 4
Q ss_pred CCCEEeCcCCCCccccccccCCCCCcEEEcCCCCCCCcccccCCCCCcEEECCCCccCccccchHhhhcCCCCcEEEccC
Q 035577 442 RLRVLDLSYNRILRIGHGLASCSSLKELYLAGNKISEVEGLHRLLKLTVLDLRFNKISTAKCLGQLAANYNSLQAISLEG 521 (662)
Q Consensus 442 ~L~~LdLs~N~Ls~Lp~~l~~L~~L~~L~Ls~N~L~~l~~l~~L~~L~~LdLs~N~Ls~l~~l~~~l~~l~~L~~L~Ls~ 521 (662)
+|+.|+|++|+|+.+|... .+|+.|++++|+|+.+|.+ ..+|+.|+|++|.|+.++. . .++|+.|+|++
T Consensus 343 ~Lq~LdLS~N~Ls~LP~lp---~~L~~L~Ls~N~L~~LP~l--~~~L~~LdLs~N~Lt~LP~---l---~s~L~~LdLS~ 411 (788)
T PRK15387 343 GLQELSVSDNQLASLPTLP---SELYKLWAYNNRLTSLPAL--PSGLKELIVSGNRLTSLPV---L---PSELKELMVSG 411 (788)
T ss_pred ccceEecCCCccCCCCCCC---cccceehhhccccccCccc--ccccceEEecCCcccCCCC---c---ccCCCEEEccC
Confidence 7888888888888877532 4566667777777666543 2456666776666665532 1 24566666666
Q ss_pred CCCCC
Q 035577 522 NPAQK 526 (662)
Q Consensus 522 N~l~~ 526 (662)
|.|..
T Consensus 412 N~Lss 416 (788)
T PRK15387 412 NRLTS 416 (788)
T ss_pred CcCCC
Confidence 66654
No 9
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.65 E-value=2.7e-18 Score=195.59 Aligned_cols=245 Identities=22% Similarity=0.314 Sum_probs=157.4
Q ss_pred ccCcccCcccccccCCCCCccCCCCCCCCCCceeecCCccCCCcchhhhcCCCCCCCCcccCCCCCCCCccCCcccCCCC
Q 035577 271 SCNYSALAKDWVMPDENSVKKLQGESLHEQWDKLPSKHFKIKRIKEWVNDLQHCSPLEESDETSVSNDQVKRDPKVLNGS 350 (662)
Q Consensus 271 ~~~l~~L~~~~L~ls~N~I~~L~~~s~l~~L~~L~l~~~si~~L~~~~~~L~~l~~L~~L~~l~ls~n~L~~~p~~l~~L 350 (662)
...+.+.....++...|.+..+...+...+++.++++.+.+..++.|...+.++..+. ...|.+..+|..+..+
T Consensus 213 ~l~~~g~~l~~L~a~~n~l~~~~~~p~p~nl~~~dis~n~l~~lp~wi~~~~nle~l~------~n~N~l~~lp~ri~~~ 286 (1081)
T KOG0618|consen 213 ELEISGPSLTALYADHNPLTTLDVHPVPLNLQYLDISHNNLSNLPEWIGACANLEALN------ANHNRLVALPLRISRI 286 (1081)
T ss_pred eEEecCcchheeeeccCcceeeccccccccceeeecchhhhhcchHHHHhcccceEec------ccchhHHhhHHHHhhh
Confidence 3333444444477788888877777778888899999999888888855444433333 2344444444333333
Q ss_pred CceeeCCccccchhhhHHHhhhccCCccEEEccCCCCCCCCC--C-------------------------CCCCCCCEEE
Q 035577 351 TAVKVDGKVTAGMEAVTKYISSLSASATTVQLSNHGLVVIPF--L-------------------------SAFVSLKVLN 403 (662)
Q Consensus 351 ~~L~l~~~~~~~l~~l~~~l~~l~~sL~~L~Ls~N~L~~lp~--l-------------------------~~L~~L~~L~ 403 (662)
+.|.......+.+..++..+..+.. |+.|+|..|+|..+|. + ..++.|+.|.
T Consensus 287 ~~L~~l~~~~nel~yip~~le~~~s-L~tLdL~~N~L~~lp~~~l~v~~~~l~~ln~s~n~l~~lp~~~e~~~~~Lq~Ly 365 (1081)
T KOG0618|consen 287 TSLVSLSAAYNELEYIPPFLEGLKS-LRTLDLQSNNLPSLPDNFLAVLNASLNTLNVSSNKLSTLPSYEENNHAALQELY 365 (1081)
T ss_pred hhHHHHHhhhhhhhhCCCcccccce-eeeeeehhccccccchHHHhhhhHHHHHHhhhhccccccccccchhhHHHHHHH
Confidence 3333333333444444444444433 5555555555555442 1 2334466666
Q ss_pred ccCCCCcccCCCcC--CCCccEEEccCCCCCCCc--CCCCCCCCCEEeCcCCCCccccccccCCCCCcEEEcCCCCCCCc
Q 035577 404 LSGNAIVRITAGAL--PRGLHILNLSKNNISTIE--GLRELTRLRVLDLSYNRILRIGHGLASCSSLKELYLAGNKISEV 479 (662)
Q Consensus 404 Ls~N~L~~l~~~~~--~~~L~~L~Ls~N~L~~lp--~l~~L~~L~~LdLs~N~Ls~Lp~~l~~L~~L~~L~Ls~N~L~~l 479 (662)
|.+|.+++-....+ .++|+.|+|++|+|..+| .+.++..|+.|+||+|+|+.||..+..+..|++|...+|+|..+
T Consensus 366 lanN~Ltd~c~p~l~~~~hLKVLhLsyNrL~~fpas~~~kle~LeeL~LSGNkL~~Lp~tva~~~~L~tL~ahsN~l~~f 445 (1081)
T KOG0618|consen 366 LANNHLTDSCFPVLVNFKHLKVLHLSYNRLNSFPASKLRKLEELEELNLSGNKLTTLPDTVANLGRLHTLRAHSNQLLSF 445 (1081)
T ss_pred HhcCcccccchhhhccccceeeeeecccccccCCHHHHhchHHhHHHhcccchhhhhhHHHHhhhhhHHHhhcCCceeec
Confidence 66776653221111 167888888888888877 47788888888888888888887788888888888888888888
Q ss_pred ccccCCCCCcEEECCCCccCccccchHhhhcCCCCcEEEccCCCC
Q 035577 480 EGLHRLLKLTVLDLRFNKISTAKCLGQLAANYNSLQAISLEGNPA 524 (662)
Q Consensus 480 ~~l~~L~~L~~LdLs~N~Ls~l~~l~~~l~~l~~L~~L~Ls~N~l 524 (662)
|.+..++.|+.+||+.|+|+.+. ++.. ...++|++|||+||..
T Consensus 446 Pe~~~l~qL~~lDlS~N~L~~~~-l~~~-~p~p~LkyLdlSGN~~ 488 (1081)
T KOG0618|consen 446 PELAQLPQLKVLDLSCNNLSEVT-LPEA-LPSPNLKYLDLSGNTR 488 (1081)
T ss_pred hhhhhcCcceEEecccchhhhhh-hhhh-CCCcccceeeccCCcc
Confidence 88888888888888888888753 2333 2337888888888875
No 10
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.63 E-value=1.7e-18 Score=182.00 Aligned_cols=194 Identities=22% Similarity=0.254 Sum_probs=151.5
Q ss_pred CccccchhhhHHHhhhccCCccEEEccCCCCCCCCC-CCCCCCCCEEEccCCCCcccCCCcCC-CCccEEEccCCCCCCC
Q 035577 357 GKVTAGMEAVTKYISSLSASATTVQLSNHGLVVIPF-LSAFVSLKVLNLSGNAIVRITAGALP-RGLHILNLSKNNISTI 434 (662)
Q Consensus 357 ~~~~~~l~~l~~~l~~l~~sL~~L~Ls~N~L~~lp~-l~~L~~L~~L~Ls~N~L~~l~~~~~~-~~L~~L~Ls~N~L~~l 434 (662)
+...+.+..++..+..+.. +..|+++.|.+..+|. ++.+..|..|+..+|+|+++|++.+. .+|..|++.+|+++.+
T Consensus 97 ~vs~n~ls~lp~~i~s~~~-l~~l~~s~n~~~el~~~i~~~~~l~dl~~~~N~i~slp~~~~~~~~l~~l~~~~n~l~~l 175 (565)
T KOG0472|consen 97 NVSHNKLSELPEQIGSLIS-LVKLDCSSNELKELPDSIGRLLDLEDLDATNNQISSLPEDMVNLSKLSKLDLEGNKLKAL 175 (565)
T ss_pred hcccchHhhccHHHhhhhh-hhhhhccccceeecCchHHHHhhhhhhhccccccccCchHHHHHHHHHHhhccccchhhC
Confidence 3344555556666666665 7788888888888876 88888888888888888888877665 6788888888888887
Q ss_pred c-CCCCCCCCCEEeCcCCCCccccccccCCCCCcEEEcCCCCCCCcccccCCCCCcEEECCCCccCccccchHhhhcCCC
Q 035577 435 E-GLRELTRLRVLDLSYNRILRIGHGLASCSSLKELYLAGNKISEVEGLHRLLKLTVLDLRFNKISTAKCLGQLAANYNS 513 (662)
Q Consensus 435 p-~l~~L~~L~~LdLs~N~Ls~Lp~~l~~L~~L~~L~Ls~N~L~~l~~l~~L~~L~~LdLs~N~Ls~l~~l~~~l~~l~~ 513 (662)
| ..-.|+.|+.||+..|-++.+|+.++.+.+|..|+|..|+|..+|.|.+|..|..|+++.|+|..++ .+...++++
T Consensus 176 ~~~~i~m~~L~~ld~~~N~L~tlP~~lg~l~~L~~LyL~~Nki~~lPef~gcs~L~Elh~g~N~i~~lp--ae~~~~L~~ 253 (565)
T KOG0472|consen 176 PENHIAMKRLKHLDCNSNLLETLPPELGGLESLELLYLRRNKIRFLPEFPGCSLLKELHVGENQIEMLP--AEHLKHLNS 253 (565)
T ss_pred CHHHHHHHHHHhcccchhhhhcCChhhcchhhhHHHHhhhcccccCCCCCccHHHHHHHhcccHHHhhH--HHHhccccc
Confidence 5 4444888888888888888888888888888888888888888888888888888888888888875 445568888
Q ss_pred CcEEEccCCCCCCCCChHHHHHHHHhhCccCceeecCCCCCCccccc
Q 035577 514 LQAISLEGNPAQKNVGDEQLKKNLQSLLPHLVYFNWQPMKASTLKDA 560 (662)
Q Consensus 514 L~~L~Ls~N~l~~~~~~~~l~~~l~~~l~~L~~Ld~~~~~~~~l~~~ 560 (662)
|..|||.+|++...... ...+.+|.+||+++++++.++-.
T Consensus 254 l~vLDLRdNklke~Pde-------~clLrsL~rLDlSNN~is~Lp~s 293 (565)
T KOG0472|consen 254 LLVLDLRDNKLKEVPDE-------ICLLRSLERLDLSNNDISSLPYS 293 (565)
T ss_pred ceeeeccccccccCchH-------HHHhhhhhhhcccCCccccCCcc
Confidence 88888888888753322 34567788888888888776653
No 11
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.59 E-value=7.6e-15 Score=171.95 Aligned_cols=244 Identities=16% Similarity=0.194 Sum_probs=116.6
Q ss_pred cccCCCCCccCCCCCCCCCCceeecCCccCCCcchhhhcCCCCCCCCcccCCCCCCCCccCCccc-CCCCCceeeCCccc
Q 035577 282 VMPDENSVKKLQGESLHEQWDKLPSKHFKIKRIKEWVNDLQHCSPLEESDETSVSNDQVKRDPKV-LNGSTAVKVDGKVT 360 (662)
Q Consensus 282 L~ls~N~I~~L~~~s~l~~L~~L~l~~~si~~L~~~~~~L~~l~~L~~L~~l~ls~n~L~~~p~~-l~~L~~L~l~~~~~ 360 (662)
+++..+.++.++.. -...++.|++.+|.++.++... +.+|+. +.++.|.+..+|.. ...|+.|+++++.+
T Consensus 183 L~L~~~~LtsLP~~-Ip~~L~~L~Ls~N~LtsLP~~l-----~~nL~~---L~Ls~N~LtsLP~~l~~~L~~L~Ls~N~L 253 (754)
T PRK15370 183 LRLKILGLTTIPAC-IPEQITTLILDNNELKSLPENL-----QGNIKT---LYANSNQLTSIPATLPDTIQEMELSINRI 253 (754)
T ss_pred EEeCCCCcCcCCcc-cccCCcEEEecCCCCCcCChhh-----ccCCCE---EECCCCccccCChhhhccccEEECcCCcc
Confidence 33444444444431 1234555555555555554321 112222 22333444444322 23455555555433
Q ss_pred cchhhhHHHhhhccCCccEEEccCCCCCCCCC-CCCCCCCCEEEccCCCCcccCCCcCCCCccEEEccCCCCCCCcCCCC
Q 035577 361 AGMEAVTKYISSLSASATTVQLSNHGLVVIPF-LSAFVSLKVLNLSGNAIVRITAGALPRGLHILNLSKNNISTIEGLRE 439 (662)
Q Consensus 361 ~~l~~l~~~l~~l~~sL~~L~Ls~N~L~~lp~-l~~L~~L~~L~Ls~N~L~~l~~~~~~~~L~~L~Ls~N~L~~lp~l~~ 439 (662)
..+ +..+ +..|+.|+|++|.|+.+|. +. .+|++|+|++|+|+.+|. .++.+|+.|+|++|.|+.+|.. .
T Consensus 254 ~~L---P~~l---~s~L~~L~Ls~N~L~~LP~~l~--~sL~~L~Ls~N~Lt~LP~-~lp~sL~~L~Ls~N~Lt~LP~~-l 323 (754)
T PRK15370 254 TEL---PERL---PSALQSLDLFHNKISCLPENLP--EELRYLSVYDNSIRTLPA-HLPSGITHLNVQSNSLTALPET-L 323 (754)
T ss_pred CcC---ChhH---hCCCCEEECcCCccCccccccC--CCCcEEECCCCccccCcc-cchhhHHHHHhcCCccccCCcc-c
Confidence 322 2211 2245666666666666554 22 356666666666665543 2334566666666666655421 1
Q ss_pred CCCCCEEeCcCCCCccccccccCCCCCcEEEcCCCCCCCcccccCCCCCcEEECCCCccCccccchHhhhcCCCCcEEEc
Q 035577 440 LTRLRVLDLSYNRILRIGHGLASCSSLKELYLAGNKISEVEGLHRLLKLTVLDLRFNKISTAKCLGQLAANYNSLQAISL 519 (662)
Q Consensus 440 L~~L~~LdLs~N~Ls~Lp~~l~~L~~L~~L~Ls~N~L~~l~~l~~L~~L~~LdLs~N~Ls~l~~l~~~l~~l~~L~~L~L 519 (662)
.++|+.|++++|.|+.+|..+. ++|+.|+|++|+|+.+|.. -.+.|+.|+|++|.|+.++ ..+. ..|+.|++
T Consensus 324 ~~sL~~L~Ls~N~Lt~LP~~l~--~sL~~L~Ls~N~L~~LP~~-lp~~L~~LdLs~N~Lt~LP---~~l~--~sL~~LdL 395 (754)
T PRK15370 324 PPGLKTLEAGENALTSLPASLP--PELQVLDVSKNQITVLPET-LPPTITTLDVSRNALTNLP---ENLP--AALQIMQA 395 (754)
T ss_pred cccceeccccCCccccCChhhc--CcccEEECCCCCCCcCChh-hcCCcCEEECCCCcCCCCC---HhHH--HHHHHHhh
Confidence 2456666666666666654432 4566666666666555421 1245666666666666543 1111 24556666
Q ss_pred cCCCCCCCCChHHHHHHHHhhCccCceeecCCCCCC
Q 035577 520 EGNPAQKNVGDEQLKKNLQSLLPHLVYFNWQPMKAS 555 (662)
Q Consensus 520 s~N~l~~~~~~~~l~~~l~~~l~~L~~Ld~~~~~~~ 555 (662)
++|.|.. +|. ....+...++.+..+++..+.+.
T Consensus 396 s~N~L~~-LP~--sl~~~~~~~~~l~~L~L~~Npls 428 (754)
T PRK15370 396 SRNNLVR-LPE--SLPHFRGEGPQPTRIIVEYNPFS 428 (754)
T ss_pred ccCCccc-Cch--hHHHHhhcCCCccEEEeeCCCcc
Confidence 6666553 221 11222333455555555555543
No 12
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.58 E-value=4e-15 Score=174.30 Aligned_cols=225 Identities=18% Similarity=0.280 Sum_probs=175.7
Q ss_pred cCcccccccCCCCCccCCCCCCCCCCceeecCCccCCCcchhhhcCCCCCCCCcccCCCCCCCCccCCccc-CCCCCcee
Q 035577 276 ALAKDWVMPDENSVKKLQGESLHEQWDKLPSKHFKIKRIKEWVNDLQHCSPLEESDETSVSNDQVKRDPKV-LNGSTAVK 354 (662)
Q Consensus 276 ~L~~~~L~ls~N~I~~L~~~s~l~~L~~L~l~~~si~~L~~~~~~L~~l~~L~~L~~l~ls~n~L~~~p~~-l~~L~~L~ 354 (662)
.+.. ++++.|.++.|+.. .+.+|+.|++.+|.++.++..+ ... |..+.++.|.+..+|.. ..+|+.|+
T Consensus 200 ~L~~--L~Ls~N~LtsLP~~-l~~nL~~L~Ls~N~LtsLP~~l-----~~~---L~~L~Ls~N~L~~LP~~l~s~L~~L~ 268 (754)
T PRK15370 200 QITT--LILDNNELKSLPEN-LQGNIKTLYANSNQLTSIPATL-----PDT---IQEMELSINRITELPERLPSALQSLD 268 (754)
T ss_pred CCcE--EEecCCCCCcCChh-hccCCCEEECCCCccccCChhh-----hcc---ccEEECcCCccCcCChhHhCCCCEEE
Confidence 4454 88899999999872 2358999999999998887521 112 34455667777776643 45789999
Q ss_pred eCCccccchhhhHHHhhhccCCccEEEccCCCCCCCCC-CCCCCCCCEEEccCCCCcccCCCcCCCCccEEEccCCCCCC
Q 035577 355 VDGKVTAGMEAVTKYISSLSASATTVQLSNHGLVVIPF-LSAFVSLKVLNLSGNAIVRITAGALPRGLHILNLSKNNIST 433 (662)
Q Consensus 355 l~~~~~~~l~~l~~~l~~l~~sL~~L~Ls~N~L~~lp~-l~~L~~L~~L~Ls~N~L~~l~~~~~~~~L~~L~Ls~N~L~~ 433 (662)
++++....+ +. .++.+|+.|+|++|.|+.+|. + ..+|+.|+|++|.++.+|.. ++++|+.|++++|.|+.
T Consensus 269 Ls~N~L~~L---P~---~l~~sL~~L~Ls~N~Lt~LP~~l--p~sL~~L~Ls~N~Lt~LP~~-l~~sL~~L~Ls~N~Lt~ 339 (754)
T PRK15370 269 LFHNKISCL---PE---NLPEELRYLSVYDNSIRTLPAHL--PSGITHLNVQSNSLTALPET-LPPGLKTLEAGENALTS 339 (754)
T ss_pred CcCCccCcc---cc---ccCCCCcEEECCCCccccCcccc--hhhHHHHHhcCCccccCCcc-ccccceeccccCCcccc
Confidence 987655443 33 234569999999999999986 3 25799999999999988743 45799999999999999
Q ss_pred CcC-CCCCCCCCEEeCcCCCCccccccccCCCCCcEEEcCCCCCCCcc-cccCCCCCcEEECCCCccCcccc-chHhhhc
Q 035577 434 IEG-LRELTRLRVLDLSYNRILRIGHGLASCSSLKELYLAGNKISEVE-GLHRLLKLTVLDLRFNKISTAKC-LGQLAAN 510 (662)
Q Consensus 434 lp~-l~~L~~L~~LdLs~N~Ls~Lp~~l~~L~~L~~L~Ls~N~L~~l~-~l~~L~~L~~LdLs~N~Ls~l~~-l~~~l~~ 510 (662)
+|. +. ++|+.|+|++|.|+.+|..+ .+.|+.|+|++|.|+.+| .+. ..|+.|++++|+|+.++. ++.++..
T Consensus 340 LP~~l~--~sL~~L~Ls~N~L~~LP~~l--p~~L~~LdLs~N~Lt~LP~~l~--~sL~~LdLs~N~L~~LP~sl~~~~~~ 413 (754)
T PRK15370 340 LPASLP--PELQVLDVSKNQITVLPETL--PPTITTLDVSRNALTNLPENLP--AALQIMQASRNNLVRLPESLPHFRGE 413 (754)
T ss_pred CChhhc--CcccEEECCCCCCCcCChhh--cCCcCEEECCCCcCCCCCHhHH--HHHHHHhhccCCcccCchhHHHHhhc
Confidence 884 43 79999999999999998765 368999999999999986 332 379999999999998753 4556666
Q ss_pred CCCCcEEEccCCCCCC
Q 035577 511 YNSLQAISLEGNPAQK 526 (662)
Q Consensus 511 l~~L~~L~Ls~N~l~~ 526 (662)
++.+..|+|.+|+|..
T Consensus 414 ~~~l~~L~L~~Npls~ 429 (754)
T PRK15370 414 GPQPTRIIVEYNPFSE 429 (754)
T ss_pred CCCccEEEeeCCCccH
Confidence 7899999999999973
No 13
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.58 E-value=4.4e-18 Score=179.00 Aligned_cols=231 Identities=22% Similarity=0.307 Sum_probs=114.7
Q ss_pred cccCCCCCccCCC-CCCCCCCceeecCCccCCCcchhhhcCCCCCCCCcccCCCCCCCCccCCcccCCC---CCceeeCC
Q 035577 282 VMPDENSVKKLQG-ESLHEQWDKLPSKHFKIKRIKEWVNDLQHCSPLEESDETSVSNDQVKRDPKVLNG---STAVKVDG 357 (662)
Q Consensus 282 L~ls~N~I~~L~~-~s~l~~L~~L~l~~~si~~L~~~~~~L~~l~~L~~L~~l~ls~n~L~~~p~~l~~---L~~L~l~~ 357 (662)
+.++.|.+..+.+ ...+..+..|.+.++.+..++.-...+..+.. +..+.+.+..+|....+ +..++.+.
T Consensus 50 lils~N~l~~l~~dl~nL~~l~vl~~~~n~l~~lp~aig~l~~l~~------l~vs~n~ls~lp~~i~s~~~l~~l~~s~ 123 (565)
T KOG0472|consen 50 LILSHNDLEVLREDLKNLACLTVLNVHDNKLSQLPAAIGELEALKS------LNVSHNKLSELPEQIGSLISLVKLDCSS 123 (565)
T ss_pred hhhccCchhhccHhhhcccceeEEEeccchhhhCCHHHHHHHHHHH------hhcccchHhhccHHHhhhhhhhhhhccc
Confidence 6677777777766 56667777777777777766653222222222 22344444444433222 22222222
Q ss_pred ccccchhhhHHHhhhccCCccEEEccCCCCCCCCC-CCCCCCCCEEEccCCCCcccCCCcCC-CCccEEEccCCCCCCCc
Q 035577 358 KVTAGMEAVTKYISSLSASATTVQLSNHGLVVIPF-LSAFVSLKVLNLSGNAIVRITAGALP-RGLHILNLSKNNISTIE 435 (662)
Q Consensus 358 ~~~~~l~~l~~~l~~l~~sL~~L~Ls~N~L~~lp~-l~~L~~L~~L~Ls~N~L~~l~~~~~~-~~L~~L~Ls~N~L~~lp 435 (662)
+.+..++..+..+-. +..|+..+|+++.+|. +..+..|..|++.+|.+..+++.... +.|+.|++..|.++.+|
T Consensus 124 ---n~~~el~~~i~~~~~-l~dl~~~~N~i~slp~~~~~~~~l~~l~~~~n~l~~l~~~~i~m~~L~~ld~~~N~L~tlP 199 (565)
T KOG0472|consen 124 ---NELKELPDSIGRLLD-LEDLDATNNQISSLPEDMVNLSKLSKLDLEGNKLKALPENHIAMKRLKHLDCNSNLLETLP 199 (565)
T ss_pred ---cceeecCchHHHHhh-hhhhhccccccccCchHHHHHHHHHHhhccccchhhCCHHHHHHHHHHhcccchhhhhcCC
Confidence 222222233333322 4455555555555554 55555555555555555554443333 45555555555555544
Q ss_pred -CCCCCCCCCEEeCcCCCCccccccccCCCCCcEEEcCCCCCCCcc--cccCCCCCcEEECCCCccCccccchHhhhcCC
Q 035577 436 -GLRELTRLRVLDLSYNRILRIGHGLASCSSLKELYLAGNKISEVE--GLHRLLKLTVLDLRFNKISTAKCLGQLAANYN 512 (662)
Q Consensus 436 -~l~~L~~L~~LdLs~N~Ls~Lp~~l~~L~~L~~L~Ls~N~L~~l~--~l~~L~~L~~LdLs~N~Ls~l~~l~~~l~~l~ 512 (662)
.++.|.+|..|+|..|+|..+| .|..+..|.+|+++.|+|+.+| ....+.+|.+|||+.|+++++ |..++-+.
T Consensus 200 ~~lg~l~~L~~LyL~~Nki~~lP-ef~gcs~L~Elh~g~N~i~~lpae~~~~L~~l~vLDLRdNklke~---Pde~clLr 275 (565)
T KOG0472|consen 200 PELGGLESLELLYLRRNKIRFLP-EFPGCSLLKELHVGENQIEMLPAEHLKHLNSLLVLDLRDNKLKEV---PDEICLLR 275 (565)
T ss_pred hhhcchhhhHHHHhhhcccccCC-CCCccHHHHHHHhcccHHHhhHHHHhcccccceeeeccccccccC---chHHHHhh
Confidence 4555555555555555555555 4555555555555555555543 233455555555555555544 33334445
Q ss_pred CCcEEEccCCCCCC
Q 035577 513 SLQAISLEGNPAQK 526 (662)
Q Consensus 513 ~L~~L~Ls~N~l~~ 526 (662)
+|.+||+++|.+++
T Consensus 276 sL~rLDlSNN~is~ 289 (565)
T KOG0472|consen 276 SLERLDLSNNDISS 289 (565)
T ss_pred hhhhhcccCCcccc
Confidence 55555555555544
No 14
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=99.58 E-value=1.9e-15 Score=147.44 Aligned_cols=155 Identities=37% Similarity=0.458 Sum_probs=64.4
Q ss_pred ccCCCCcccCCCcCCCCccEEEccCCCCCCCcCCC-CCCCCCEEeCcCCCCccccccccCCCCCcEEEcCCCCCCCcc-c
Q 035577 404 LSGNAIVRITAGALPRGLHILNLSKNNISTIEGLR-ELTRLRVLDLSYNRILRIGHGLASCSSLKELYLAGNKISEVE-G 481 (662)
Q Consensus 404 Ls~N~L~~l~~~~~~~~L~~L~Ls~N~L~~lp~l~-~L~~L~~LdLs~N~Ls~Lp~~l~~L~~L~~L~Ls~N~L~~l~-~ 481 (662)
|..+.|..++...-+..+++|+|.+|.|+.++.+. .+.+|+.|+|++|.|+.++ ++..++.|++|++++|+|+.+. .
T Consensus 4 lt~~~i~~~~~~~n~~~~~~L~L~~n~I~~Ie~L~~~l~~L~~L~Ls~N~I~~l~-~l~~L~~L~~L~L~~N~I~~i~~~ 82 (175)
T PF14580_consen 4 LTANMIEQIAQYNNPVKLRELNLRGNQISTIENLGATLDKLEVLDLSNNQITKLE-GLPGLPRLKTLDLSNNRISSISEG 82 (175)
T ss_dssp --------------------------------S--TT-TT--EEE-TTS--S--T-T----TT--EEE--SS---S-CHH
T ss_pred ccccccccccccccccccccccccccccccccchhhhhcCCCEEECCCCCCcccc-CccChhhhhhcccCCCCCCccccc
Confidence 44455555544443456677777777777777665 4778888888888888875 6777888888888888888874 4
Q ss_pred c-cCCCCCcEEECCCCccCccccchHhhhcCCCCcEEEccCCCCCCCCChHHHHHHHHhhCccCceeecCCCCCCccccc
Q 035577 482 L-HRLLKLTVLDLRFNKISTAKCLGQLAANYNSLQAISLEGNPAQKNVGDEQLKKNLQSLLPHLVYFNWQPMKASTLKDA 560 (662)
Q Consensus 482 l-~~L~~L~~LdLs~N~Ls~l~~l~~~l~~l~~L~~L~Ls~N~l~~~~~~~~l~~~l~~~l~~L~~Ld~~~~~~~~l~~~ 560 (662)
+ ..+++|+.|+|++|+|.++..+.. +..+++|+.|+|.+||++. ...|+.+++..+|+|+.||...+...++..+
T Consensus 83 l~~~lp~L~~L~L~~N~I~~l~~l~~-L~~l~~L~~L~L~~NPv~~---~~~YR~~vi~~lP~Lk~LD~~~V~~~ER~~A 158 (175)
T PF14580_consen 83 LDKNLPNLQELYLSNNKISDLNELEP-LSSLPKLRVLSLEGNPVCE---KKNYRLFVIYKLPSLKVLDGQDVTEEERQEA 158 (175)
T ss_dssp HHHH-TT--EEE-TTS---SCCCCGG-GGG-TT--EEE-TT-GGGG---STTHHHHHHHH-TT-SEETTEETTS-B----
T ss_pred hHHhCCcCCEEECcCCcCCChHHhHH-HHcCCCcceeeccCCcccc---hhhHHHHHHHHcChhheeCCEEccHHHhccc
Confidence 4 357888889999998888766543 4789999999999999975 3679999999999999999999998888776
Q ss_pred ccc
Q 035577 561 SDR 563 (662)
Q Consensus 561 ~~~ 563 (662)
...
T Consensus 159 ~~~ 161 (175)
T PF14580_consen 159 EKL 161 (175)
T ss_dssp ---
T ss_pred ccc
Confidence 553
No 15
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.57 E-value=3.2e-16 Score=165.02 Aligned_cols=251 Identities=22% Similarity=0.229 Sum_probs=188.5
Q ss_pred cccCCCCCccCCC--CCCCCCCceeecCCccCCCcch-hhhcCCCCCCCCcccCCCCCCCCccCCccc-CCCCCceeeCC
Q 035577 282 VMPDENSVKKLQG--ESLHEQWDKLPSKHFKIKRIKE-WVNDLQHCSPLEESDETSVSNDQVKRDPKV-LNGSTAVKVDG 357 (662)
Q Consensus 282 L~ls~N~I~~L~~--~s~l~~L~~L~l~~~si~~L~~-~~~~L~~l~~L~~L~~l~ls~n~L~~~p~~-l~~L~~L~l~~ 357 (662)
+++..|.|+.|++ |..+++|++|++++|.|..|.. -|.++..+..|. ..+.|+|+.++.. +.+|..+.+..
T Consensus 72 irLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lv-----lyg~NkI~~l~k~~F~gL~slqrLl 146 (498)
T KOG4237|consen 72 IRLDQNQISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLV-----LYGNNKITDLPKGAFGGLSSLQRLL 146 (498)
T ss_pred EEeccCCcccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHH-----hhcCCchhhhhhhHhhhHHHHHHHh
Confidence 7889999999999 8999999999999999999854 344444443333 3455888777743 56666555444
Q ss_pred ccccchhhhH-HHhhhccCCccEEEccCCCCCCCCC--CCCCCCCCEEEccCCCCcccCCC-------------------
Q 035577 358 KVTAGMEAVT-KYISSLSASATTVQLSNHGLVVIPF--LSAFVSLKVLNLSGNAIVRITAG------------------- 415 (662)
Q Consensus 358 ~~~~~l~~l~-~~l~~l~~sL~~L~Ls~N~L~~lp~--l~~L~~L~~L~Ls~N~L~~l~~~------------------- 415 (662)
...+.+.-+. ..+..++. +..|.+.+|.+..++. |..+..++.+.+..|.+......
T Consensus 147 lNan~i~Cir~~al~dL~~-l~lLslyDn~~q~i~~~tf~~l~~i~tlhlA~np~icdCnL~wla~~~a~~~ietsgarc 225 (498)
T KOG4237|consen 147 LNANHINCIRQDALRDLPS-LSLLSLYDNKIQSICKGTFQGLAAIKTLHLAQNPFICDCNLPWLADDLAMNPIETSGARC 225 (498)
T ss_pred cChhhhcchhHHHHHHhhh-cchhcccchhhhhhccccccchhccchHhhhcCccccccccchhhhHHhhchhhccccee
Confidence 3333333322 34555655 7889999999999885 88999999999988874211110
Q ss_pred -----------------cCCCCccEE----EccCCCCCCCc--CCCCCCCCCEEeCcCCCCcccccc-ccCCCCCcEEEc
Q 035577 416 -----------------ALPRGLHIL----NLSKNNISTIE--GLRELTRLRVLDLSYNRILRIGHG-LASCSSLKELYL 471 (662)
Q Consensus 416 -----------------~~~~~L~~L----~Ls~N~L~~lp--~l~~L~~L~~LdLs~N~Ls~Lp~~-l~~L~~L~~L~L 471 (662)
.|...++.+ ....+.....| .|..|++|+.|+|++|+|+.|.++ |..+..|++|.|
T Consensus 226 ~~p~rl~~~Ri~q~~a~kf~c~~esl~s~~~~~d~~d~~cP~~cf~~L~~L~~lnlsnN~i~~i~~~aFe~~a~l~eL~L 305 (498)
T KOG4237|consen 226 VSPYRLYYKRINQEDARKFLCSLESLPSRLSSEDFPDSICPAKCFKKLPNLRKLNLSNNKITRIEDGAFEGAAELQELYL 305 (498)
T ss_pred cchHHHHHHHhcccchhhhhhhHHhHHHhhccccCcCCcChHHHHhhcccceEeccCCCccchhhhhhhcchhhhhhhhc
Confidence 000011111 11111222223 388999999999999999998655 999999999999
Q ss_pred CCCCCCCcc--cccCCCCCcEEECCCCccCccccchHhhhcCCCCcEEEccCCCCCCCCChHHHHHHHHhh
Q 035577 472 AGNKISEVE--GLHRLLKLTVLDLRFNKISTAKCLGQLAANYNSLQAISLEGNPAQKNVGDEQLKKNLQSL 540 (662)
Q Consensus 472 s~N~L~~l~--~l~~L~~L~~LdLs~N~Ls~l~~l~~~l~~l~~L~~L~Ls~N~l~~~~~~~~l~~~l~~~ 540 (662)
..|+|..+. .|.++..|+.|+|.+|+|+.+. +.+|..+..|.+|+|-.|||.|+|...++.+|+...
T Consensus 306 ~~N~l~~v~~~~f~~ls~L~tL~L~~N~it~~~--~~aF~~~~~l~~l~l~~Np~~CnC~l~wl~~Wlr~~ 374 (498)
T KOG4237|consen 306 TRNKLEFVSSGMFQGLSGLKTLSLYDNQITTVA--PGAFQTLFSLSTLNLLSNPFNCNCRLAWLGEWLRKK 374 (498)
T ss_pred CcchHHHHHHHhhhccccceeeeecCCeeEEEe--cccccccceeeeeehccCcccCccchHHHHHHHhhC
Confidence 999999884 7899999999999999999985 778899999999999999999999999999999764
No 16
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=99.55 E-value=1.2e-15 Score=166.77 Aligned_cols=207 Identities=26% Similarity=0.315 Sum_probs=170.6
Q ss_pred ccEEEccCCCCCCCCC-CCCCCCCCEEEccCCCCcccCCCcCCCCccEEEccCCCCCCCc-CCCCCCCCCEEeCcCCCCc
Q 035577 377 ATTVQLSNHGLVVIPF-LSAFVSLKVLNLSGNAIVRITAGALPRGLHILNLSKNNISTIE-GLRELTRLRVLDLSYNRIL 454 (662)
Q Consensus 377 L~~L~Ls~N~L~~lp~-l~~L~~L~~L~Ls~N~L~~l~~~~~~~~L~~L~Ls~N~L~~lp-~l~~L~~L~~LdLs~N~Ls 454 (662)
|..|.|+.|.|..+|. +.++..|++|||+.|+++.+|.+.+.--|+.|.+++|+++.+| .++.+..|..||.++|.|.
T Consensus 100 Le~liLy~n~~r~ip~~i~~L~~lt~l~ls~NqlS~lp~~lC~lpLkvli~sNNkl~~lp~~ig~~~tl~~ld~s~nei~ 179 (722)
T KOG0532|consen 100 LESLILYHNCIRTIPEAICNLEALTFLDLSSNQLSHLPDGLCDLPLKVLIVSNNKLTSLPEEIGLLPTLAHLDVSKNEIQ 179 (722)
T ss_pred HHHHHHHhccceecchhhhhhhHHHHhhhccchhhcCChhhhcCcceeEEEecCccccCCcccccchhHHHhhhhhhhhh
Confidence 6788899999999987 9999999999999999999999988889999999999999987 7889999999999999999
Q ss_pred cccccccCCCCCcEEEcCCCCCCCcc-cccCCCCCcEEECCCCccCccccchHhhhcCCCCcEEEccCCCCCCCCChHHH
Q 035577 455 RIGHGLASCSSLKELYLAGNKISEVE-GLHRLLKLTVLDLRFNKISTAKCLGQLAANYNSLQAISLEGNPAQKNVGDEQL 533 (662)
Q Consensus 455 ~Lp~~l~~L~~L~~L~Ls~N~L~~l~-~l~~L~~L~~LdLs~N~Ls~l~~l~~~l~~l~~L~~L~Ls~N~l~~~~~~~~l 533 (662)
.+|..++.+.+|+.|.+..|++..+| .+. .-.|..||+++|+|..+ |..|.+|..|++|-|.+||++. |..++
T Consensus 180 slpsql~~l~slr~l~vrRn~l~~lp~El~-~LpLi~lDfScNkis~i---Pv~fr~m~~Lq~l~LenNPLqS--PPAqI 253 (722)
T KOG0532|consen 180 SLPSQLGYLTSLRDLNVRRNHLEDLPEELC-SLPLIRLDFSCNKISYL---PVDFRKMRHLQVLQLENNPLQS--PPAQI 253 (722)
T ss_pred hchHHhhhHHHHHHHHHhhhhhhhCCHHHh-CCceeeeecccCceeec---chhhhhhhhheeeeeccCCCCC--ChHHH
Confidence 99999999999999999999999996 566 45799999999999988 7788999999999999999987 33333
Q ss_pred HHHHHhhCccCceeecCCCCCCccccccc--ce-----e-e---eccCcccccccCCC-CcccccccCCC
Q 035577 534 KKNLQSLLPHLVYFNWQPMKASTLKDASD--RS-----V-R---LGISAHLFDRGLRS-DNKAARKSTHR 591 (662)
Q Consensus 534 ~~~l~~~l~~L~~Ld~~~~~~~~l~~~~~--~~-----~-~---~~~s~~~~~~~l~~-~~~~~r~~~~~ 591 (662)
+..+...-++||+.+.+.-..-.+... +. . . .+.....+++++.+ +.+.+||+++.
T Consensus 254 --C~kGkVHIFKyL~~qA~q~~~a~~~~t~~RP~~~~~c~~ed~s~~~~~~lDSG~nsvD~gdKRwS~~e 321 (722)
T KOG0532|consen 254 --CEKGKVHIFKYLSTQACQSGGALDLYTTLRPRHFSSCHVEDASGNQYRQLDSGFNSVDSGDKRWSGNE 321 (722)
T ss_pred --HhccceeeeeeecchhccccCCcccccccCCcccCCcchhhhccCcccccccCcccccCcccccccCC
Confidence 667788889999988772111000000 00 0 0 02222355788888 78999999886
No 17
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.54 E-value=2.2e-16 Score=180.23 Aligned_cols=145 Identities=32% Similarity=0.338 Sum_probs=122.2
Q ss_pred CccEEEccCCCCC--CCCCCCCCCCCCEEEccCCCCcccCCCcCC--CCccEEEccCCCCCCCc-CCCCCCCCCEEeCcC
Q 035577 376 SATTVQLSNHGLV--VIPFLSAFVSLKVLNLSGNAIVRITAGALP--RGLHILNLSKNNISTIE-GLRELTRLRVLDLSY 450 (662)
Q Consensus 376 sL~~L~Ls~N~L~--~lp~l~~L~~L~~L~Ls~N~L~~l~~~~~~--~~L~~L~Ls~N~L~~lp-~l~~L~~L~~LdLs~ 450 (662)
.|+.|+|.+|.++ .+|.+.++++|++|+|++|+|..+|...+. ..|+.|+|++|+|+.+| .+..+..|++|....
T Consensus 360 ~Lq~LylanN~Ltd~c~p~l~~~~hLKVLhLsyNrL~~fpas~~~kle~LeeL~LSGNkL~~Lp~tva~~~~L~tL~ahs 439 (1081)
T KOG0618|consen 360 ALQELYLANNHLTDSCFPVLVNFKHLKVLHLSYNRLNSFPASKLRKLEELEELNLSGNKLTTLPDTVANLGRLHTLRAHS 439 (1081)
T ss_pred HHHHHHHhcCcccccchhhhccccceeeeeecccccccCCHHHHhchHHhHHHhcccchhhhhhHHHHhhhhhHHHhhcC
Confidence 4778999999998 678899999999999999999999877666 78999999999999998 689999999999999
Q ss_pred CCCccccccccCCCCCcEEEcCCCCCCCc--ccccCCCCCcEEECCCCccCccccchHhhhcCCCCcEEEccCCC
Q 035577 451 NRILRIGHGLASCSSLKELYLAGNKISEV--EGLHRLLKLTVLDLRFNKISTAKCLGQLAANYNSLQAISLEGNP 523 (662)
Q Consensus 451 N~Ls~Lp~~l~~L~~L~~L~Ls~N~L~~l--~~l~~L~~L~~LdLs~N~Ls~l~~l~~~l~~l~~L~~L~Ls~N~ 523 (662)
|+|..+| .+..++.|+.+||+.|.|+.+ +.....++|++|||++|.-..+. ...+..+.++...++.-|+
T Consensus 440 N~l~~fP-e~~~l~qL~~lDlS~N~L~~~~l~~~~p~p~LkyLdlSGN~~l~~d--~~~l~~l~~l~~~~i~~~~ 511 (1081)
T KOG0618|consen 440 NQLLSFP-ELAQLPQLKVLDLSCNNLSEVTLPEALPSPNLKYLDLSGNTRLVFD--HKTLKVLKSLSQMDITLNN 511 (1081)
T ss_pred Cceeech-hhhhcCcceEEecccchhhhhhhhhhCCCcccceeeccCCcccccc--hhhhHHhhhhhheecccCC
Confidence 9999999 799999999999999999976 33223379999999999754443 3344556677777776663
No 18
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.53 E-value=2.5e-16 Score=149.75 Aligned_cols=150 Identities=27% Similarity=0.435 Sum_probs=131.7
Q ss_pred ccEEEccCCCCCCCCC-CCCCCCCCEEEccCCCCcccCCCcCC-CCccEEEccCCCCCCCc-CCCCCCCCCEEeCcCCCC
Q 035577 377 ATTVQLSNHGLVVIPF-LSAFVSLKVLNLSGNAIVRITAGALP-RGLHILNLSKNNISTIE-GLRELTRLRVLDLSYNRI 453 (662)
Q Consensus 377 L~~L~Ls~N~L~~lp~-l~~L~~L~~L~Ls~N~L~~l~~~~~~-~~L~~L~Ls~N~L~~lp-~l~~L~~L~~LdLs~N~L 453 (662)
++.|-|++|.++.+|. +..+.+|+.|++.+|+|+++|...-. +.|+.|++.-|++..+| +|+.++.|+.|||.+|.+
T Consensus 35 ITrLtLSHNKl~~vppnia~l~nlevln~~nnqie~lp~~issl~klr~lnvgmnrl~~lprgfgs~p~levldltynnl 114 (264)
T KOG0617|consen 35 ITRLTLSHNKLTVVPPNIAELKNLEVLNLSNNQIEELPTSISSLPKLRILNVGMNRLNILPRGFGSFPALEVLDLTYNNL 114 (264)
T ss_pred hhhhhcccCceeecCCcHHHhhhhhhhhcccchhhhcChhhhhchhhhheecchhhhhcCccccCCCchhhhhhcccccc
Confidence 6788899999998876 99999999999999999998865544 78999999999999888 899999999999999998
Q ss_pred c--cccccccCCCCCcEEEcCCCCCCCcc-cccCCCCCcEEECCCCccCccccchHhhhcCCCCcEEEccCCCCCCCCC
Q 035577 454 L--RIGHGLASCSSLKELYLAGNKISEVE-GLHRLLKLTVLDLRFNKISTAKCLGQLAANYNSLQAISLEGNPAQKNVG 529 (662)
Q Consensus 454 s--~Lp~~l~~L~~L~~L~Ls~N~L~~l~-~l~~L~~L~~LdLs~N~Ls~l~~l~~~l~~l~~L~~L~Ls~N~l~~~~~ 529 (662)
. .+|..|..+..|+.|+|++|.+..+| .++.+++|+.|.++.|.+-.+ |..++.+..|++|++.+|.++-..|
T Consensus 115 ~e~~lpgnff~m~tlralyl~dndfe~lp~dvg~lt~lqil~lrdndll~l---pkeig~lt~lrelhiqgnrl~vlpp 190 (264)
T KOG0617|consen 115 NENSLPGNFFYMTTLRALYLGDNDFEILPPDVGKLTNLQILSLRDNDLLSL---PKEIGDLTRLRELHIQGNRLTVLPP 190 (264)
T ss_pred ccccCCcchhHHHHHHHHHhcCCCcccCChhhhhhcceeEEeeccCchhhC---cHHHHHHHHHHHHhcccceeeecCh
Confidence 7 78888889999999999999999885 799999999999999988777 6677888999999999999875444
No 19
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.40 E-value=8.1e-15 Score=139.50 Aligned_cols=163 Identities=24% Similarity=0.296 Sum_probs=140.1
Q ss_pred CCCCCCCCCCCCCEEEccCCCCcccCCCcCC-CCccEEEccCCCCCCCc-CCCCCCCCCEEeCcCCCCccccccccCCCC
Q 035577 388 VVIPFLSAFVSLKVLNLSGNAIVRITAGALP-RGLHILNLSKNNISTIE-GLRELTRLRVLDLSYNRILRIGHGLASCSS 465 (662)
Q Consensus 388 ~~lp~l~~L~~L~~L~Ls~N~L~~l~~~~~~-~~L~~L~Ls~N~L~~lp-~l~~L~~L~~LdLs~N~Ls~Lp~~l~~L~~ 465 (662)
..+|.+..+.+.+.|.|++|.++.+|+..-. .+|+.|++.+|+|+.+| .++.|++|+.|+++.|++..+|.+|+.++.
T Consensus 24 ~~~~gLf~~s~ITrLtLSHNKl~~vppnia~l~nlevln~~nnqie~lp~~issl~klr~lnvgmnrl~~lprgfgs~p~ 103 (264)
T KOG0617|consen 24 EELPGLFNMSNITRLTLSHNKLTVVPPNIAELKNLEVLNLSNNQIEELPTSISSLPKLRILNVGMNRLNILPRGFGSFPA 103 (264)
T ss_pred hhcccccchhhhhhhhcccCceeecCCcHHHhhhhhhhhcccchhhhcChhhhhchhhhheecchhhhhcCccccCCCch
Confidence 4567778888999999999999999877655 89999999999999998 799999999999999999999999999999
Q ss_pred CcEEEcCCCCCCC--cc-cccCCCCCcEEECCCCccCccccchHhhhcCCCCcEEEccCCCCCCCCChHHHHHHHHhhCc
Q 035577 466 LKELYLAGNKISE--VE-GLHRLLKLTVLDLRFNKISTAKCLGQLAANYNSLQAISLEGNPAQKNVGDEQLKKNLQSLLP 542 (662)
Q Consensus 466 L~~L~Ls~N~L~~--l~-~l~~L~~L~~LdLs~N~Ls~l~~l~~~l~~l~~L~~L~Ls~N~l~~~~~~~~l~~~l~~~l~ 542 (662)
|++|+|.+|.+.. +| .|..++.|+.|+|++|.+.-+ |.-++.+++|+.|.+.+|.+-... .-++.+.
T Consensus 104 levldltynnl~e~~lpgnff~m~tlralyl~dndfe~l---p~dvg~lt~lqil~lrdndll~lp-------keig~lt 173 (264)
T KOG0617|consen 104 LEVLDLTYNNLNENSLPGNFFYMTTLRALYLGDNDFEIL---PPDVGKLTNLQILSLRDNDLLSLP-------KEIGDLT 173 (264)
T ss_pred hhhhhccccccccccCCcchhHHHHHHHHHhcCCCcccC---ChhhhhhcceeEEeeccCchhhCc-------HHHHHHH
Confidence 9999999999975 45 688889999999999999877 555689999999999999886421 2245677
Q ss_pred cCceeecCCCCCCccccc
Q 035577 543 HLVYFNWQPMKASTLKDA 560 (662)
Q Consensus 543 ~L~~Ld~~~~~~~~l~~~ 560 (662)
.|+.|.++++.++.++..
T Consensus 174 ~lrelhiqgnrl~vlppe 191 (264)
T KOG0617|consen 174 RLRELHIQGNRLTVLPPE 191 (264)
T ss_pred HHHHHhcccceeeecChh
Confidence 888888888887766543
No 20
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.39 E-value=1.2e-11 Score=152.91 Aligned_cols=251 Identities=17% Similarity=0.194 Sum_probs=145.9
Q ss_pred cccCCCCCccCCCCCCCCCCceeecCCccCCCcchhhhcCCCCCCCCcccCCCCCCCCccCCc--ccCCCCCceeeCCcc
Q 035577 282 VMPDENSVKKLQGESLHEQWDKLPSKHFKIKRIKEWVNDLQHCSPLEESDETSVSNDQVKRDP--KVLNGSTAVKVDGKV 359 (662)
Q Consensus 282 L~ls~N~I~~L~~~s~l~~L~~L~l~~~si~~L~~~~~~L~~l~~L~~L~~l~ls~n~L~~~p--~~l~~L~~L~l~~~~ 359 (662)
+.+..+.++.++....+.+|+.|++.++.+..++. .+..+..|+.++.... +.+..+| ..+.+|+.|++.++.
T Consensus 594 L~~~~~~l~~lP~~f~~~~L~~L~L~~s~l~~L~~---~~~~l~~Lk~L~Ls~~--~~l~~ip~ls~l~~Le~L~L~~c~ 668 (1153)
T PLN03210 594 LRWDKYPLRCMPSNFRPENLVKLQMQGSKLEKLWD---GVHSLTGLRNIDLRGS--KNLKEIPDLSMATNLETLKLSDCS 668 (1153)
T ss_pred EEecCCCCCCCCCcCCccCCcEEECcCcccccccc---ccccCCCCCEEECCCC--CCcCcCCccccCCcccEEEecCCC
Confidence 55566777777774466788888888887777654 2344445544443221 1233333 235778888887732
Q ss_pred ccchhhhHHHhhhccCCccEEEccCC-CCCCCCCCCCCCCCCEEEccCCCC-cccCCCcCCCCccEEEccCCCCCCCcCC
Q 035577 360 TAGMEAVTKYISSLSASATTVQLSNH-GLVVIPFLSAFVSLKVLNLSGNAI-VRITAGALPRGLHILNLSKNNISTIEGL 437 (662)
Q Consensus 360 ~~~l~~l~~~l~~l~~sL~~L~Ls~N-~L~~lp~l~~L~~L~~L~Ls~N~L-~~l~~~~~~~~L~~L~Ls~N~L~~lp~l 437 (662)
.+..++..+..+.. |+.|++++| .++.+|...++++|++|+|++|.. ..+|. ++.+|++|+|++|.|+.+|..
T Consensus 669 --~L~~lp~si~~L~~-L~~L~L~~c~~L~~Lp~~i~l~sL~~L~Lsgc~~L~~~p~--~~~nL~~L~L~~n~i~~lP~~ 743 (1153)
T PLN03210 669 --SLVELPSSIQYLNK-LEDLDMSRCENLEILPTGINLKSLYRLNLSGCSRLKSFPD--ISTNISWLDLDETAIEEFPSN 743 (1153)
T ss_pred --CccccchhhhccCC-CCEEeCCCCCCcCccCCcCCCCCCCEEeCCCCCCcccccc--ccCCcCeeecCCCcccccccc
Confidence 23445566666665 888999886 677888744778888888887643 33331 235677777777776665521
Q ss_pred CC-------------------------------CCCCCEEeCcCCC-CccccccccCCCCCcEEEcCCC-CCCCcccccC
Q 035577 438 RE-------------------------------LTRLRVLDLSYNR-ILRIGHGLASCSSLKELYLAGN-KISEVEGLHR 484 (662)
Q Consensus 438 ~~-------------------------------L~~L~~LdLs~N~-Ls~Lp~~l~~L~~L~~L~Ls~N-~L~~l~~l~~ 484 (662)
.. .++|+.|+|++|. +..+|..++++++|+.|+|++| .+..+|....
T Consensus 744 ~~l~~L~~L~l~~~~~~~l~~~~~~l~~~~~~~~~sL~~L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~C~~L~~LP~~~~ 823 (1153)
T PLN03210 744 LRLENLDELILCEMKSEKLWERVQPLTPLMTMLSPSLTRLFLSDIPSLVELPSSIQNLHKLEHLEIENCINLETLPTGIN 823 (1153)
T ss_pred ccccccccccccccchhhccccccccchhhhhccccchheeCCCCCCccccChhhhCCCCCCEEECCCCCCcCeeCCCCC
Confidence 11 1355666666653 3456766777777777777765 3444443223
Q ss_pred CCC---------------------CcEEECCCCccCccccchHhhhcCCCCcEEEccCC-CCCCCCChHHHHHHHHhhCc
Q 035577 485 LLK---------------------LTVLDLRFNKISTAKCLGQLAANYNSLQAISLEGN-PAQKNVGDEQLKKNLQSLLP 542 (662)
Q Consensus 485 L~~---------------------L~~LdLs~N~Ls~l~~l~~~l~~l~~L~~L~Ls~N-~l~~~~~~~~l~~~l~~~l~ 542 (662)
+++ |+.|+|++|.|+.+ |..+..+++|+.|+|++| .+.+ ++. ....++
T Consensus 824 L~sL~~L~Ls~c~~L~~~p~~~~nL~~L~Ls~n~i~~i---P~si~~l~~L~~L~L~~C~~L~~-l~~------~~~~L~ 893 (1153)
T PLN03210 824 LESLESLDLSGCSRLRTFPDISTNISDLNLSRTGIEEV---PWWIEKFSNLSFLDMNGCNNLQR-VSL------NISKLK 893 (1153)
T ss_pred ccccCEEECCCCCccccccccccccCEeECCCCCCccC---hHHHhcCCCCCEEECCCCCCcCc-cCc------cccccc
Confidence 444 44555555555544 445566666666666663 3332 221 123345
Q ss_pred cCceeecCCC
Q 035577 543 HLVYFNWQPM 552 (662)
Q Consensus 543 ~L~~Ld~~~~ 552 (662)
.|+.+++.++
T Consensus 894 ~L~~L~l~~C 903 (1153)
T PLN03210 894 HLETVDFSDC 903 (1153)
T ss_pred CCCeeecCCC
Confidence 5555555544
No 21
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=99.38 E-value=3.5e-13 Score=131.60 Aligned_cols=140 Identities=39% Similarity=0.481 Sum_probs=58.0
Q ss_pred EccCCCCCCCCCCCCCCCCCEEEccCCCCcccCCCcC-CCCccEEEccCCCCCCCcCCCCCCCCCEEeCcCCCCcccccc
Q 035577 381 QLSNHGLVVIPFLSAFVSLKVLNLSGNAIVRITAGAL-PRGLHILNLSKNNISTIEGLRELTRLRVLDLSYNRILRIGHG 459 (662)
Q Consensus 381 ~Ls~N~L~~lp~l~~L~~L~~L~Ls~N~L~~l~~~~~-~~~L~~L~Ls~N~L~~lp~l~~L~~L~~LdLs~N~Ls~Lp~~ 459 (662)
.|..+.|..++.+.+...++.|+|.+|.|+.|..-.. ..+|+.|+|++|.|+.++++..++.|++|++++|.|+.++..
T Consensus 3 ~lt~~~i~~~~~~~n~~~~~~L~L~~n~I~~Ie~L~~~l~~L~~L~Ls~N~I~~l~~l~~L~~L~~L~L~~N~I~~i~~~ 82 (175)
T PF14580_consen 3 RLTANMIEQIAQYNNPVKLRELNLRGNQISTIENLGATLDKLEVLDLSNNQITKLEGLPGLPRLKTLDLSNNRISSISEG 82 (175)
T ss_dssp ---------------------------------S--TT-TT--EEE-TTS--S--TT----TT--EEE--SS---S-CHH
T ss_pred cccccccccccccccccccccccccccccccccchhhhhcCCCEEECCCCCCccccCccChhhhhhcccCCCCCCccccc
Confidence 3555667777777788889999999999998875432 368999999999999999999999999999999999999766
Q ss_pred c-cCCCCCcEEEcCCCCCCCc---ccccCCCCCcEEECCCCccCcccc-chHhhhcCCCCcEEEcc
Q 035577 460 L-ASCSSLKELYLAGNKISEV---EGLHRLLKLTVLDLRFNKISTAKC-LGQLAANYNSLQAISLE 520 (662)
Q Consensus 460 l-~~L~~L~~L~Ls~N~L~~l---~~l~~L~~L~~LdLs~N~Ls~l~~-l~~~l~~l~~L~~L~Ls 520 (662)
+ ..+++|++|+|++|+|.++ ..+..+++|+.|+|.+|.++.... -...+..+|+|+.||-.
T Consensus 83 l~~~lp~L~~L~L~~N~I~~l~~l~~L~~l~~L~~L~L~~NPv~~~~~YR~~vi~~lP~Lk~LD~~ 148 (175)
T PF14580_consen 83 LDKNLPNLQELYLSNNKISDLNELEPLSSLPKLRVLSLEGNPVCEKKNYRLFVIYKLPSLKVLDGQ 148 (175)
T ss_dssp HHHH-TT--EEE-TTS---SCCCCGGGGG-TT--EEE-TT-GGGGSTTHHHHHHHH-TT-SEETTE
T ss_pred hHHhCCcCCEEECcCCcCCChHHhHHHHcCCCcceeeccCCcccchhhHHHHHHHHcChhheeCCE
Confidence 5 4689999999999999877 467889999999999999997532 24567789999998754
No 22
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.37 E-value=9.8e-14 Score=146.46 Aligned_cols=196 Identities=23% Similarity=0.278 Sum_probs=135.3
Q ss_pred cchhhhHHHhhhccCCccEEEccCCCCCCCCC--CCCCCCCCEEEccCCCCcccCCCcCC--CCccEEEccC-CCCCCCc
Q 035577 361 AGMEAVTKYISSLSASATTVQLSNHGLVVIPF--LSAFVSLKVLNLSGNAIVRITAGALP--RGLHILNLSK-NNISTIE 435 (662)
Q Consensus 361 ~~l~~l~~~l~~l~~sL~~L~Ls~N~L~~lp~--l~~L~~L~~L~Ls~N~L~~l~~~~~~--~~L~~L~Ls~-N~L~~lp 435 (662)
+....+......+|...+.++|..|+|+.||. |..+++|+.|||++|+|+.|.+.+|. ..|..|.+.+ |+|+.+|
T Consensus 53 Cr~~GL~eVP~~LP~~tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~ 132 (498)
T KOG4237|consen 53 CRGKGLTEVPANLPPETVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKITDLP 132 (498)
T ss_pred ccCCCcccCcccCCCcceEEEeccCCcccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchhhhh
Confidence 34444555556777778889999999999986 89999999999999999988888887 5555555544 8888876
Q ss_pred --CCCCCCC------------------------CCEEeCcCCCCcccccc-ccCCCCCcEEEcCCCCCC-----------
Q 035577 436 --GLRELTR------------------------LRVLDLSYNRILRIGHG-LASCSSLKELYLAGNKIS----------- 477 (662)
Q Consensus 436 --~l~~L~~------------------------L~~LdLs~N~Ls~Lp~~-l~~L~~L~~L~Ls~N~L~----------- 477 (662)
.|.+|.. |..|.+..|.+..++.+ |..+..++.+.+..|.+-
T Consensus 133 k~~F~gL~slqrLllNan~i~Cir~~al~dL~~l~lLslyDn~~q~i~~~tf~~l~~i~tlhlA~np~icdCnL~wla~~ 212 (498)
T KOG4237|consen 133 KGAFGGLSSLQRLLLNANHINCIRQDALRDLPSLSLLSLYDNKIQSICKGTFQGLAAIKTLHLAQNPFICDCNLPWLADD 212 (498)
T ss_pred hhHhhhHHHHHHHhcChhhhcchhHHHHHHhhhcchhcccchhhhhhccccccchhccchHhhhcCccccccccchhhhH
Confidence 3555544 44445555555555442 445555555544444310
Q ss_pred -------------------------------------Cc--------------c--cccCCCCCcEEECCCCccCccccc
Q 035577 478 -------------------------------------EV--------------E--GLHRLLKLTVLDLRFNKISTAKCL 504 (662)
Q Consensus 478 -------------------------------------~l--------------~--~l~~L~~L~~LdLs~N~Ls~l~~l 504 (662)
++ | .|..+++|+.|+|++|+|+.+.
T Consensus 213 ~a~~~ietsgarc~~p~rl~~~Ri~q~~a~kf~c~~esl~s~~~~~d~~d~~cP~~cf~~L~~L~~lnlsnN~i~~i~-- 290 (498)
T KOG4237|consen 213 LAMNPIETSGARCVSPYRLYYKRINQEDARKFLCSLESLPSRLSSEDFPDSICPAKCFKKLPNLRKLNLSNNKITRIE-- 290 (498)
T ss_pred HhhchhhcccceecchHHHHHHHhcccchhhhhhhHHhHHHhhccccCcCCcChHHHHhhcccceEeccCCCccchhh--
Confidence 00 0 1446678888888888888875
Q ss_pred hHhhhcCCCCcEEEccCCCCCCCCChHHHHHHHHhhCccCceeecCCCCCCcccccccce
Q 035577 505 GQLAANYNSLQAISLEGNPAQKNVGDEQLKKNLQSLLPHLVYFNWQPMKASTLKDASDRS 564 (662)
Q Consensus 505 ~~~l~~l~~L~~L~Ls~N~l~~~~~~~~l~~~l~~~l~~L~~Ld~~~~~~~~l~~~~~~~ 564 (662)
..+|..+..++.|+|..|.+. .+...++.-+..|+.|++.++.++.+....+..
T Consensus 291 ~~aFe~~a~l~eL~L~~N~l~------~v~~~~f~~ls~L~tL~L~~N~it~~~~~aF~~ 344 (498)
T KOG4237|consen 291 DGAFEGAAELQELYLTRNKLE------FVSSGMFQGLSGLKTLSLYDNQITTVAPGAFQT 344 (498)
T ss_pred hhhhcchhhhhhhhcCcchHH------HHHHHhhhccccceeeeecCCeeEEEecccccc
Confidence 667778888888888888773 355667778899999999999888776655543
No 23
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.32 E-value=1.5e-12 Score=137.42 Aligned_cols=178 Identities=27% Similarity=0.308 Sum_probs=84.4
Q ss_pred ccEEEccCCCCCCC-C-CCCCC---CCCCEEEccCCCCcccCCC-------cCCCCccEEEccCCCCCCC-----c-CCC
Q 035577 377 ATTVQLSNHGLVVI-P-FLSAF---VSLKVLNLSGNAIVRITAG-------ALPRGLHILNLSKNNISTI-----E-GLR 438 (662)
Q Consensus 377 L~~L~Ls~N~L~~l-p-~l~~L---~~L~~L~Ls~N~L~~l~~~-------~~~~~L~~L~Ls~N~L~~l-----p-~l~ 438 (662)
|+.|+|++|.+... + .+..+ ++|++|++++|.+...... .++++|+.|+|++|.++.- . .+.
T Consensus 83 L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~ 162 (319)
T cd00116 83 LQELDLSDNALGPDGCGVLESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEALAKALR 162 (319)
T ss_pred eeEEEccCCCCChhHHHHHHHHhccCcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHHHHHHHHHH
Confidence 66666666655421 1 12222 3366666666655421110 1114556666666666521 1 244
Q ss_pred CCCCCCEEeCcCCCCc-----cccccccCCCCCcEEEcCCCCCCCc------ccccCCCCCcEEECCCCccCccccchHh
Q 035577 439 ELTRLRVLDLSYNRIL-----RIGHGLASCSSLKELYLAGNKISEV------EGLHRLLKLTVLDLRFNKISTAKCLGQL 507 (662)
Q Consensus 439 ~L~~L~~LdLs~N~Ls-----~Lp~~l~~L~~L~~L~Ls~N~L~~l------~~l~~L~~L~~LdLs~N~Ls~l~~l~~~ 507 (662)
.+.+|++|++++|.++ .++..+..+++|+.|+|++|.+++. ..+..+++|++|++++|.+++.. +...
T Consensus 163 ~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~~~~~~~L~~L~ls~n~l~~~~-~~~l 241 (319)
T cd00116 163 ANRDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNGLTDEGASALAETLASLKSLEVLNLGDNNLTDAG-AAAL 241 (319)
T ss_pred hCCCcCEEECcCCCCchHHHHHHHHHHHhCCCCCEEeccCCccChHHHHHHHHHhcccCCCCEEecCCCcCchHH-HHHH
Confidence 4555666666666655 2233344445666666666665533 12444556666666666665421 0111
Q ss_pred hh----cCCCCcEEEccCCCCCCCCChHHHHHHHHhhCccCceeecCCCCCCcc
Q 035577 508 AA----NYNSLQAISLEGNPAQKNVGDEQLKKNLQSLLPHLVYFNWQPMKASTL 557 (662)
Q Consensus 508 l~----~l~~L~~L~Ls~N~l~~~~~~~~l~~~l~~~l~~L~~Ld~~~~~~~~l 557 (662)
.. ..+.|+.|++++|.++.. ....+.. ....+++|+++++..+.+...
T Consensus 242 ~~~~~~~~~~L~~L~l~~n~i~~~-~~~~l~~-~~~~~~~L~~l~l~~N~l~~~ 293 (319)
T cd00116 242 ASALLSPNISLLTLSLSCNDITDD-GAKDLAE-VLAEKESLLELDLRGNKFGEE 293 (319)
T ss_pred HHHHhccCCCceEEEccCCCCCcH-HHHHHHH-HHhcCCCccEEECCCCCCcHH
Confidence 11 125666666666655421 1111222 122235566666666655543
No 24
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=99.31 E-value=3.2e-13 Score=138.18 Aligned_cols=144 Identities=33% Similarity=0.421 Sum_probs=124.0
Q ss_pred CCCCCCCCEEEccCCCCcccCCCc-CCCCccEEEccCCCCCCCcCCCCCCCCCEEeCcCCCCccccccccCCCCCcEEEc
Q 035577 393 LSAFVSLKVLNLSGNAIVRITAGA-LPRGLHILNLSKNNISTIEGLRELTRLRVLDLSYNRILRIGHGLASCSSLKELYL 471 (662)
Q Consensus 393 l~~L~~L~~L~Ls~N~L~~l~~~~-~~~~L~~L~Ls~N~L~~lp~l~~L~~L~~LdLs~N~Ls~Lp~~l~~L~~L~~L~L 471 (662)
+-.+..|+.|||++|.|+.+.... +.+.++.|++++|.|..+..+..|++|+.||||+|.++.+..+-..+-+++.|.|
T Consensus 280 ~dTWq~LtelDLS~N~I~~iDESvKL~Pkir~L~lS~N~i~~v~nLa~L~~L~~LDLS~N~Ls~~~Gwh~KLGNIKtL~L 359 (490)
T KOG1259|consen 280 ADTWQELTELDLSGNLITQIDESVKLAPKLRRLILSQNRIRTVQNLAELPQLQLLDLSGNLLAECVGWHLKLGNIKTLKL 359 (490)
T ss_pred cchHhhhhhccccccchhhhhhhhhhccceeEEeccccceeeehhhhhcccceEeecccchhHhhhhhHhhhcCEeeeeh
Confidence 345678999999999999887543 3389999999999999999999999999999999999988766667889999999
Q ss_pred CCCCCCCcccccCCCCCcEEECCCCccCccccchHhhhcCCCCcEEEccCCCCCCCCChHHHHHHHHhh
Q 035577 472 AGNKISEVEGLHRLLKLTVLDLRFNKISTAKCLGQLAANYNSLQAISLEGNPAQKNVGDEQLKKNLQSL 540 (662)
Q Consensus 472 s~N~L~~l~~l~~L~~L~~LdLs~N~Ls~l~~l~~~l~~l~~L~~L~Ls~N~l~~~~~~~~l~~~l~~~ 540 (662)
+.|.|.++.++..+-+|..||+++|+|..+.. ...++++|-|++|.|.+||+.+..+ |+..+.+.
T Consensus 360 a~N~iE~LSGL~KLYSLvnLDl~~N~Ie~lde-V~~IG~LPCLE~l~L~~NPl~~~vd---YRTKVLa~ 424 (490)
T KOG1259|consen 360 AQNKIETLSGLRKLYSLVNLDLSSNQIEELDE-VNHIGNLPCLETLRLTGNPLAGSVD---YRTKVLAR 424 (490)
T ss_pred hhhhHhhhhhhHhhhhheeccccccchhhHHH-hcccccccHHHHHhhcCCCccccch---HHHHHHHH
Confidence 99999999999999999999999999999875 4566899999999999999998544 55555443
No 25
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.27 E-value=3.1e-12 Score=135.06 Aligned_cols=269 Identities=23% Similarity=0.208 Sum_probs=171.7
Q ss_pred cccCCCCCccCCC---CCCCCCCceeecCCccCCC--cchhhhcCCCCCCCCcccCCCCCCC----CccC---CcccCCC
Q 035577 282 VMPDENSVKKLQG---ESLHEQWDKLPSKHFKIKR--IKEWVNDLQHCSPLEESDETSVSND----QVKR---DPKVLNG 349 (662)
Q Consensus 282 L~ls~N~I~~L~~---~s~l~~L~~L~l~~~si~~--L~~~~~~L~~l~~L~~L~~l~ls~n----~L~~---~p~~l~~ 349 (662)
|++..+.+..-.- +..+.+++.|.+.++.++. +..+...+..++.++.+........ .+.. ....+.+
T Consensus 3 l~L~~~~l~~~~~~~~~~~l~~L~~l~l~~~~l~~~~~~~i~~~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~~ 82 (319)
T cd00116 3 LSLKGELLKTERATELLPKLLCLQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNETGRIPRGLQSLLQGLTKGCG 82 (319)
T ss_pred cccccCcccccchHHHHHHHhhccEEeecCCCCcHHHHHHHHHHHhhCCCceEEeccccccCCcchHHHHHHHHHHhcCc
Confidence 4555555542222 4455678999999988754 2223334555555555443222221 1111 1122568
Q ss_pred CCceeeCCccccc-hhhhHHHhhhccCCccEEEccCCCCCCC-----C-CCCCC-CCCCEEEccCCCCcccCCC----cC
Q 035577 350 STAVKVDGKVTAG-MEAVTKYISSLSASATTVQLSNHGLVVI-----P-FLSAF-VSLKVLNLSGNAIVRITAG----AL 417 (662)
Q Consensus 350 L~~L~l~~~~~~~-l~~l~~~l~~l~~sL~~L~Ls~N~L~~l-----p-~l~~L-~~L~~L~Ls~N~L~~l~~~----~~ 417 (662)
|+.|++.++.... .......+... ..|+.|++++|.+... . .+..+ ++|+.|+|++|.++.-... .+
T Consensus 83 L~~L~l~~~~~~~~~~~~~~~l~~~-~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~~~ 161 (319)
T cd00116 83 LQELDLSDNALGPDGCGVLESLLRS-SSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEALAKAL 161 (319)
T ss_pred eeEEEccCCCCChhHHHHHHHHhcc-CcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHHHHHHHHH
Confidence 8999998866542 22222222222 3499999999998731 1 25566 8999999999998732111 12
Q ss_pred C--CCccEEEccCCCCCCC------cCCCCCCCCCEEeCcCCCCc-----cccccccCCCCCcEEEcCCCCCCCc--ccc
Q 035577 418 P--RGLHILNLSKNNISTI------EGLRELTRLRVLDLSYNRIL-----RIGHGLASCSSLKELYLAGNKISEV--EGL 482 (662)
Q Consensus 418 ~--~~L~~L~Ls~N~L~~l------p~l~~L~~L~~LdLs~N~Ls-----~Lp~~l~~L~~L~~L~Ls~N~L~~l--~~l 482 (662)
. .+|++|+|++|.++.- ..+..+++|++|+|++|.++ .++..+..+++|++|++++|.+++. ..+
T Consensus 162 ~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~~~~~~~L~~L~ls~n~l~~~~~~~l 241 (319)
T cd00116 162 RANRDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNGLTDEGASALAETLASLKSLEVLNLGDNNLTDAGAAAL 241 (319)
T ss_pred HhCCCcCEEECcCCCCchHHHHHHHHHHHhCCCCCEEeccCCccChHHHHHHHHHhcccCCCCEEecCCCcCchHHHHHH
Confidence 2 5899999999999841 13556689999999999986 3444577789999999999999863 122
Q ss_pred c-----CCCCCcEEECCCCccCc--cccchHhhhcCCCCcEEEccCCCCCCCCChHHHHHHHHhhCccCceeecCCC
Q 035577 483 H-----RLLKLTVLDLRFNKIST--AKCLGQLAANYNSLQAISLEGNPAQKNVGDEQLKKNLQSLLPHLVYFNWQPM 552 (662)
Q Consensus 483 ~-----~L~~L~~LdLs~N~Ls~--l~~l~~~l~~l~~L~~L~Ls~N~l~~~~~~~~l~~~l~~~l~~L~~Ld~~~~ 552 (662)
. ..+.|+.|++++|.|++ ...+...+..+++|+.|++++|.+...- ...+...+...-+.++.+++..+
T Consensus 242 ~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~~~~~L~~l~l~~N~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~ 317 (319)
T cd00116 242 ASALLSPNISLLTLSLSCNDITDDGAKDLAEVLAEKESLLELDLRGNKFGEEG-AQLLAESLLEPGNELESLWVKDD 317 (319)
T ss_pred HHHHhccCCCceEEEccCCCCCcHHHHHHHHHHhcCCCccEEECCCCCCcHHH-HHHHHHHHhhcCCchhhcccCCC
Confidence 1 24799999999999983 3344566677789999999999997531 12222333333367777776654
No 26
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.26 E-value=6.7e-11 Score=146.39 Aligned_cols=232 Identities=16% Similarity=0.228 Sum_probs=132.2
Q ss_pred CcccCcccccccCCC-CCccCCCCCCCCCCceeecCCcc-CCCcchhhhcCCCCCCCCcccCCCCCCCCccCCcc--cCC
Q 035577 273 NYSALAKDWVMPDEN-SVKKLQGESLHEQWDKLPSKHFK-IKRIKEWVNDLQHCSPLEESDETSVSNDQVKRDPK--VLN 348 (662)
Q Consensus 273 ~l~~L~~~~L~ls~N-~I~~L~~~s~l~~L~~L~l~~~s-i~~L~~~~~~L~~l~~L~~L~~l~ls~n~L~~~p~--~l~ 348 (662)
.+.+|.. ++++.+ .++.++.+..+++|+.|.+.+|. +..++.. +..+..|..|+... .+.+..+|. .+.
T Consensus 632 ~l~~Lk~--L~Ls~~~~l~~ip~ls~l~~Le~L~L~~c~~L~~lp~s---i~~L~~L~~L~L~~--c~~L~~Lp~~i~l~ 704 (1153)
T PLN03210 632 SLTGLRN--IDLRGSKNLKEIPDLSMATNLETLKLSDCSSLVELPSS---IQYLNKLEDLDMSR--CENLEILPTGINLK 704 (1153)
T ss_pred cCCCCCE--EECCCCCCcCcCCccccCCcccEEEecCCCCccccchh---hhccCCCCEEeCCC--CCCcCccCCcCCCC
Confidence 3455554 666543 56777777778888888887764 4445543 34444444433321 123333332 356
Q ss_pred CCCceeeCCccccchhhhHHHhhhccCCccEEEccCCCCCCCCCCCCCCCCCEEEccC----------------------
Q 035577 349 GSTAVKVDGKVTAGMEAVTKYISSLSASATTVQLSNHGLVVIPFLSAFVSLKVLNLSG---------------------- 406 (662)
Q Consensus 349 ~L~~L~l~~~~~~~l~~l~~~l~~l~~sL~~L~Ls~N~L~~lp~l~~L~~L~~L~Ls~---------------------- 406 (662)
+|+.|.+.+... +..++ ....+|+.|+|++|.|..+|....+++|++|++.+
T Consensus 705 sL~~L~Lsgc~~--L~~~p----~~~~nL~~L~L~~n~i~~lP~~~~l~~L~~L~l~~~~~~~l~~~~~~l~~~~~~~~~ 778 (1153)
T PLN03210 705 SLYRLNLSGCSR--LKSFP----DISTNISWLDLDETAIEEFPSNLRLENLDELILCEMKSEKLWERVQPLTPLMTMLSP 778 (1153)
T ss_pred CCCEEeCCCCCC--ccccc----cccCCcCeeecCCCccccccccccccccccccccccchhhccccccccchhhhhccc
Confidence 777777776421 22221 23345778888888887777533445555554444
Q ss_pred ---------CC-CcccCCCcCC-CCccEEEccCC-CCCCCcCCCCCCCCCEEeCcCCC-CccccccccCCCCCcEEEcCC
Q 035577 407 ---------NA-IVRITAGALP-RGLHILNLSKN-NISTIEGLRELTRLRVLDLSYNR-ILRIGHGLASCSSLKELYLAG 473 (662)
Q Consensus 407 ---------N~-L~~l~~~~~~-~~L~~L~Ls~N-~L~~lp~l~~L~~L~~LdLs~N~-Ls~Lp~~l~~L~~L~~L~Ls~ 473 (662)
|. +..+|..... ++|+.|+|++| .+..+|....+++|+.|+|++|. +..+|. ...+|+.|+|++
T Consensus 779 sL~~L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~C~~L~~LP~~~~L~sL~~L~Ls~c~~L~~~p~---~~~nL~~L~Ls~ 855 (1153)
T PLN03210 779 SLTRLFLSDIPSLVELPSSIQNLHKLEHLEIENCINLETLPTGINLESLESLDLSGCSRLRTFPD---ISTNISDLNLSR 855 (1153)
T ss_pred cchheeCCCCCCccccChhhhCCCCCCEEECCCCCCcCeeCCCCCccccCEEECCCCCccccccc---cccccCEeECCC
Confidence 32 2222211111 34455555443 34444432344555555555432 223332 125677888888
Q ss_pred CCCCCcc-cccCCCCCcEEECCC-CccCccccchHhhhcCCCCcEEEccCCC
Q 035577 474 NKISEVE-GLHRLLKLTVLDLRF-NKISTAKCLGQLAANYNSLQAISLEGNP 523 (662)
Q Consensus 474 N~L~~l~-~l~~L~~L~~LdLs~-N~Ls~l~~l~~~l~~l~~L~~L~Ls~N~ 523 (662)
|.|+.+| .+..+++|+.|+|++ |++..+ +..+..+++|+.|+++++.
T Consensus 856 n~i~~iP~si~~l~~L~~L~L~~C~~L~~l---~~~~~~L~~L~~L~l~~C~ 904 (1153)
T PLN03210 856 TGIEEVPWWIEKFSNLSFLDMNGCNNLQRV---SLNISKLKHLETVDFSDCG 904 (1153)
T ss_pred CCCccChHHHhcCCCCCEEECCCCCCcCcc---CcccccccCCCeeecCCCc
Confidence 8888876 678889999999987 566665 4445678888888888875
No 27
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=99.19 E-value=1.7e-12 Score=138.76 Aligned_cols=215 Identities=21% Similarity=0.234 Sum_probs=171.0
Q ss_pred CCCCCceeeCCccccchhhhHHHhhhccCCccEEEccCCCCCCCCC---CCCCCCCCEEEccCCCCcccCCCcCC---CC
Q 035577 347 LNGSTAVKVDGKVTAGMEAVTKYISSLSASATTVQLSNHGLVVIPF---LSAFVSLKVLNLSGNAIVRITAGALP---RG 420 (662)
Q Consensus 347 l~~L~~L~l~~~~~~~l~~l~~~l~~l~~sL~~L~Ls~N~L~~lp~---l~~L~~L~~L~Ls~N~L~~l~~~~~~---~~ 420 (662)
+.+++.|+|+.+.+..+..+.....++|. |+.|+|+.|.+...-. -..+.+|+.|.|+.|.|+.-....+. ++
T Consensus 145 ~~~v~~LdLS~NL~~nw~~v~~i~eqLp~-Le~LNls~Nrl~~~~~s~~~~~l~~lK~L~l~~CGls~k~V~~~~~~fPs 223 (505)
T KOG3207|consen 145 LPNVRDLDLSRNLFHNWFPVLKIAEQLPS-LENLNLSSNRLSNFISSNTTLLLSHLKQLVLNSCGLSWKDVQWILLTFPS 223 (505)
T ss_pred CCcceeecchhhhHHhHHHHHHHHHhccc-chhcccccccccCCccccchhhhhhhheEEeccCCCCHHHHHHHHHhCCc
Confidence 67788899999999899988888889987 9999999999875432 35778999999999999743222211 79
Q ss_pred ccEEEccCCCCCCC--cCCCCCCCCCEEeCcCCCCccccc--cccCCCCCcEEEcCCCCCCCc--cc------ccCCCCC
Q 035577 421 LHILNLSKNNISTI--EGLRELTRLRVLDLSYNRILRIGH--GLASCSSLKELYLAGNKISEV--EG------LHRLLKL 488 (662)
Q Consensus 421 L~~L~Ls~N~L~~l--p~l~~L~~L~~LdLs~N~Ls~Lp~--~l~~L~~L~~L~Ls~N~L~~l--~~------l~~L~~L 488 (662)
|+.|+|..|..-.+ ....-+..|+.|||++|.+-.++. ..+.++.|+.|+++.+.|.++ +. ...+++|
T Consensus 224 l~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li~~~~~~~~~~l~~L~~Lnls~tgi~si~~~d~~s~~kt~~f~kL 303 (505)
T KOG3207|consen 224 LEVLYLEANEIILIKATSTKILQTLQELDLSNNNLIDFDQGYKVGTLPGLNQLNLSSTGIASIAEPDVESLDKTHTFPKL 303 (505)
T ss_pred HHHhhhhcccccceecchhhhhhHHhhccccCCcccccccccccccccchhhhhccccCcchhcCCCccchhhhcccccc
Confidence 99999999953322 245667889999999999988874 378899999999999999987 22 3567899
Q ss_pred cEEECCCCccCccccchHhhhcCCCCcEEEccCCCCCCCCChHHHHHHHHhhCccCceeecCCCCCCccccccccee
Q 035577 489 TVLDLRFNKISTAKCLGQLAANYNSLQAISLEGNPAQKNVGDEQLKKNLQSLLPHLVYFNWQPMKASTLKDASDRSV 565 (662)
Q Consensus 489 ~~LdLs~N~Ls~l~~l~~~l~~l~~L~~L~Ls~N~l~~~~~~~~l~~~l~~~l~~L~~Ld~~~~~~~~l~~~~~~~~ 565 (662)
+.|++..|+|.++..+... ..+++|+.|.+..|+++..-.. ..-.+++.++++..||...+.+.++..+....+
T Consensus 304 ~~L~i~~N~I~~w~sl~~l-~~l~nlk~l~~~~n~ln~e~~~--a~~~VIAr~~~l~~LN~~di~p~eRR~AEl~~~ 377 (505)
T KOG3207|consen 304 EYLNISENNIRDWRSLNHL-RTLENLKHLRITLNYLNKETDT--AKLLVIARISQLVKLNDVDISPNERRDAELYYL 377 (505)
T ss_pred eeeecccCccccccccchh-hccchhhhhhcccccccccccc--eeEEeeeehhhhhhhcccccChHHhhhhhhhHH
Confidence 9999999999998765544 6788999999999999875443 233577888999999999998888877766544
No 28
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=99.09 E-value=8.6e-12 Score=127.82 Aligned_cols=125 Identities=29% Similarity=0.303 Sum_probs=113.2
Q ss_pred ccEEEccCCCCCCCCC-CCCCCCCCEEEccCCCCcccCCCcCCCCccEEEccCCCCCCCcCC-CCCCCCCEEeCcCCCCc
Q 035577 377 ATTVQLSNHGLVVIPF-LSAFVSLKVLNLSGNAIVRITAGALPRGLHILNLSKNNISTIEGL-RELTRLRVLDLSYNRIL 454 (662)
Q Consensus 377 L~~L~Ls~N~L~~lp~-l~~L~~L~~L~Ls~N~L~~l~~~~~~~~L~~L~Ls~N~L~~lp~l-~~L~~L~~LdLs~N~Ls 454 (662)
|+.|||++|.|+.+.. +.-++.++.|++++|.|..+....+..+|+.|+|++|.++.+.++ ..|-+.++|.|+.|.|.
T Consensus 286 LtelDLS~N~I~~iDESvKL~Pkir~L~lS~N~i~~v~nLa~L~~L~~LDLS~N~Ls~~~Gwh~KLGNIKtL~La~N~iE 365 (490)
T KOG1259|consen 286 LTELDLSGNLITQIDESVKLAPKLRRLILSQNRIRTVQNLAELPQLQLLDLSGNLLAECVGWHLKLGNIKTLKLAQNKIE 365 (490)
T ss_pred hhhccccccchhhhhhhhhhccceeEEeccccceeeehhhhhcccceEeecccchhHhhhhhHhhhcCEeeeehhhhhHh
Confidence 8899999999999986 778899999999999999998877779999999999999998753 56778999999999999
Q ss_pred cccccccCCCCCcEEEcCCCCCCCc---ccccCCCCCcEEECCCCccCccc
Q 035577 455 RIGHGLASCSSLKELYLAGNKISEV---EGLHRLLKLTVLDLRFNKISTAK 502 (662)
Q Consensus 455 ~Lp~~l~~L~~L~~L~Ls~N~L~~l---~~l~~L~~L~~LdLs~N~Ls~l~ 502 (662)
.+. +++.+-+|..|++++|+|..+ ..+++++.|++|.|.+|.|..+.
T Consensus 366 ~LS-GL~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L~~NPl~~~v 415 (490)
T KOG1259|consen 366 TLS-GLRKLYSLVNLDLSSNQIEELDEVNHIGNLPCLETLRLTGNPLAGSV 415 (490)
T ss_pred hhh-hhHhhhhheeccccccchhhHHHhcccccccHHHHHhhcCCCccccc
Confidence 886 799999999999999999877 47999999999999999999874
No 29
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=99.09 E-value=7.4e-11 Score=129.30 Aligned_cols=149 Identities=30% Similarity=0.381 Sum_probs=110.9
Q ss_pred ccEEEccCCCCCCCC-CCCCCCCCCEEEccCCCCcccCCCc-CCCCccEEEccCCCCCCCcCC-CCCCCCCEEeCcCCCC
Q 035577 377 ATTVQLSNHGLVVIP-FLSAFVSLKVLNLSGNAIVRITAGA-LPRGLHILNLSKNNISTIEGL-RELTRLRVLDLSYNRI 453 (662)
Q Consensus 377 L~~L~Ls~N~L~~lp-~l~~L~~L~~L~Ls~N~L~~l~~~~-~~~~L~~L~Ls~N~L~~lp~l-~~L~~L~~LdLs~N~L 453 (662)
|+.|++++|.+..+| .+..+++|+.|++++|+++.++... ..+.|+.|++++|+++.+|.. ..+..|++|.+++|.+
T Consensus 142 L~~L~l~~N~i~~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~~~L~~L~ls~N~i~~l~~~~~~~~~L~~l~~~~N~~ 221 (394)
T COG4886 142 LKELDLSDNKIESLPSPLRNLPNLKNLDLSFNDLSDLPKLLSNLSNLNNLDLSGNKISDLPPEIELLSALEELDLSNNSI 221 (394)
T ss_pred cccccccccchhhhhhhhhccccccccccCCchhhhhhhhhhhhhhhhheeccCCccccCchhhhhhhhhhhhhhcCCcc
Confidence 677888888888775 4778888888888888888877665 447788888888888887754 4555588888888866
Q ss_pred ccccccccCCCCCcEEEcCCCCCCCc-ccccCCCCCcEEECCCCccCccccchHhhhcCCCCcEEEccCCCCCCCCC
Q 035577 454 LRIGHGLASCSSLKELYLAGNKISEV-EGLHRLLKLTVLDLRFNKISTAKCLGQLAANYNSLQAISLEGNPAQKNVG 529 (662)
Q Consensus 454 s~Lp~~l~~L~~L~~L~Ls~N~L~~l-~~l~~L~~L~~LdLs~N~Ls~l~~l~~~l~~l~~L~~L~Ls~N~l~~~~~ 529 (662)
..++..+..+..+..|.+.+|++..+ ..+..+..|+.|++++|.++.+.. +..+.+|+.|++++|.+....+
T Consensus 222 ~~~~~~~~~~~~l~~l~l~~n~~~~~~~~~~~l~~l~~L~~s~n~i~~i~~----~~~~~~l~~L~~s~n~~~~~~~ 294 (394)
T COG4886 222 IELLSSLSNLKNLSGLELSNNKLEDLPESIGNLSNLETLDLSNNQISSISS----LGSLTNLRELDLSGNSLSNALP 294 (394)
T ss_pred eecchhhhhcccccccccCCceeeeccchhccccccceecccccccccccc----ccccCccCEEeccCccccccch
Confidence 66666677778888888888887774 456677778888888888887742 4667788888888887765444
No 30
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=99.08 E-value=3.3e-12 Score=140.14 Aligned_cols=171 Identities=24% Similarity=0.275 Sum_probs=149.0
Q ss_pred ccEEEccCCCCCCCCC-CCCCCCCCEEEccCCCCcccCCCcCC-CCccEEEccCCCCCCCc-CCCCCCCCCEEeCcCCCC
Q 035577 377 ATTVQLSNHGLVVIPF-LSAFVSLKVLNLSGNAIVRITAGALP-RGLHILNLSKNNISTIE-GLRELTRLRVLDLSYNRI 453 (662)
Q Consensus 377 L~~L~Ls~N~L~~lp~-l~~L~~L~~L~Ls~N~L~~l~~~~~~-~~L~~L~Ls~N~L~~lp-~l~~L~~L~~LdLs~N~L 453 (662)
...+||+.|++..+|. +..|..|+.|.|..|.|..++..... ..|++|+|+.|+++.+| .++.|+ |+.|-+++|++
T Consensus 77 t~~aDlsrNR~~elp~~~~~f~~Le~liLy~n~~r~ip~~i~~L~~lt~l~ls~NqlS~lp~~lC~lp-Lkvli~sNNkl 155 (722)
T KOG0532|consen 77 TVFADLSRNRFSELPEEACAFVSLESLILYHNCIRTIPEAICNLEALTFLDLSSNQLSHLPDGLCDLP-LKVLIVSNNKL 155 (722)
T ss_pred hhhhhccccccccCchHHHHHHHHHHHHHHhccceecchhhhhhhHHHHhhhccchhhcCChhhhcCc-ceeEEEecCcc
Confidence 4578999999999997 88899999999999999988865544 78999999999999998 677766 99999999999
Q ss_pred ccccccccCCCCCcEEEcCCCCCCCcc-cccCCCCCcEEECCCCccCccccchHhhhcCCCCcEEEccCCCCCCCCChHH
Q 035577 454 LRIGHGLASCSSLKELYLAGNKISEVE-GLHRLLKLTVLDLRFNKISTAKCLGQLAANYNSLQAISLEGNPAQKNVGDEQ 532 (662)
Q Consensus 454 s~Lp~~l~~L~~L~~L~Ls~N~L~~l~-~l~~L~~L~~LdLs~N~Ls~l~~l~~~l~~l~~L~~L~Ls~N~l~~~~~~~~ 532 (662)
+.+|+.++.+..|..|+.+.|.|..++ .++.+.+|+.|+++.|++..+ |..+..| .|..||+++|++..
T Consensus 156 ~~lp~~ig~~~tl~~ld~s~nei~slpsql~~l~slr~l~vrRn~l~~l---p~El~~L-pLi~lDfScNkis~------ 225 (722)
T KOG0532|consen 156 TSLPEEIGLLPTLAHLDVSKNEIQSLPSQLGYLTSLRDLNVRRNHLEDL---PEELCSL-PLIRLDFSCNKISY------ 225 (722)
T ss_pred ccCCcccccchhHHHhhhhhhhhhhchHHhhhHHHHHHHHHhhhhhhhC---CHHHhCC-ceeeeecccCceee------
Confidence 999999999999999999999999995 799999999999999999988 4444555 49999999999974
Q ss_pred HHHHHHhhCccCceeecCCCCCCcccc
Q 035577 533 LKKNLQSLLPHLVYFNWQPMKASTLKD 559 (662)
Q Consensus 533 l~~~l~~~l~~L~~Ld~~~~~~~~l~~ 559 (662)
....+..+.+|++|-+.+|.+...+.
T Consensus 226 -iPv~fr~m~~Lq~l~LenNPLqSPPA 251 (722)
T KOG0532|consen 226 -LPVDFRKMRHLQVLQLENNPLQSPPA 251 (722)
T ss_pred -cchhhhhhhhheeeeeccCCCCCChH
Confidence 23456778999999999998877654
No 31
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=98.98 E-value=7e-10 Score=121.60 Aligned_cols=172 Identities=28% Similarity=0.316 Sum_probs=144.2
Q ss_pred CccEEEccCCCCCCCCC-CCCCC-CCCEEEccCCCCcccC-CCcCCCCccEEEccCCCCCCCcCCC-CCCCCCEEeCcCC
Q 035577 376 SATTVQLSNHGLVVIPF-LSAFV-SLKVLNLSGNAIVRIT-AGALPRGLHILNLSKNNISTIEGLR-ELTRLRVLDLSYN 451 (662)
Q Consensus 376 sL~~L~Ls~N~L~~lp~-l~~L~-~L~~L~Ls~N~L~~l~-~~~~~~~L~~L~Ls~N~L~~lp~l~-~L~~L~~LdLs~N 451 (662)
.++.|++.+|.++.++. ...+. +|+.|++++|.+..++ ....++.|+.|++++|+++.++... .++.|+.|++++|
T Consensus 117 ~l~~L~l~~n~i~~i~~~~~~~~~nL~~L~l~~N~i~~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~~~L~~L~ls~N 196 (394)
T COG4886 117 NLTSLDLDNNNITDIPPLIGLLKSNLKELDLSDNKIESLPSPLRNLPNLKNLDLSFNDLSDLPKLLSNLSNLNNLDLSGN 196 (394)
T ss_pred ceeEEecCCcccccCccccccchhhcccccccccchhhhhhhhhccccccccccCCchhhhhhhhhhhhhhhhheeccCC
Confidence 38899999999999988 45553 8999999999999985 3444589999999999999998655 8999999999999
Q ss_pred CCccccccccCCCCCcEEEcCCCC-CCCcccccCCCCCcEEECCCCccCccccchHhhhcCCCCcEEEccCCCCCCCCCh
Q 035577 452 RILRIGHGLASCSSLKELYLAGNK-ISEVEGLHRLLKLTVLDLRFNKISTAKCLGQLAANYNSLQAISLEGNPAQKNVGD 530 (662)
Q Consensus 452 ~Ls~Lp~~l~~L~~L~~L~Ls~N~-L~~l~~l~~L~~L~~LdLs~N~Ls~l~~l~~~l~~l~~L~~L~Ls~N~l~~~~~~ 530 (662)
++..+|..+..+..|++|.+++|. +..+..+..+..+..|.+.+|++..+ +..+..++.|+.|++++|.+.....
T Consensus 197 ~i~~l~~~~~~~~~L~~l~~~~N~~~~~~~~~~~~~~l~~l~l~~n~~~~~---~~~~~~l~~l~~L~~s~n~i~~i~~- 272 (394)
T COG4886 197 KISDLPPEIELLSALEELDLSNNSIIELLSSLSNLKNLSGLELSNNKLEDL---PESIGNLSNLETLDLSNNQISSISS- 272 (394)
T ss_pred ccccCchhhhhhhhhhhhhhcCCcceecchhhhhcccccccccCCceeeec---cchhccccccceecccccccccccc-
Confidence 999999877777889999999995 55556788999999999999999875 4556788899999999999975211
Q ss_pred HHHHHHHHhhCccCceeecCCCCCCccc
Q 035577 531 EQLKKNLQSLLPHLVYFNWQPMKASTLK 558 (662)
Q Consensus 531 ~~l~~~l~~~l~~L~~Ld~~~~~~~~l~ 558 (662)
...+.++++|++..+.+....
T Consensus 273 -------~~~~~~l~~L~~s~n~~~~~~ 293 (394)
T COG4886 273 -------LGSLTNLRELDLSGNSLSNAL 293 (394)
T ss_pred -------ccccCccCEEeccCccccccc
Confidence 567789999999988775543
No 32
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=98.95 E-value=1.6e-11 Score=137.60 Aligned_cols=179 Identities=27% Similarity=0.367 Sum_probs=131.8
Q ss_pred ccCCcccCCCCCceeeCCccccchhhhHHHhhhccCCccEEEccCCCCCC-----------CCCCCCCCCCCEEEccCCC
Q 035577 340 VKRDPKVLNGSTAVKVDGKVTAGMEAVTKYISSLSASATTVQLSNHGLVV-----------IPFLSAFVSLKVLNLSGNA 408 (662)
Q Consensus 340 L~~~p~~l~~L~~L~l~~~~~~~l~~l~~~l~~l~~sL~~L~Ls~N~L~~-----------lp~l~~L~~L~~L~Ls~N~ 408 (662)
|.-+| +..|+.|.+.+........+ ..+...|+.|.+.+ .+.. +-.--.+..|...+++.|.
T Consensus 103 i~ifp--F~sLr~LElrg~~L~~~~GL----~~lr~qLe~LIC~~-Sl~Al~~v~ascggd~~ns~~Wn~L~~a~fsyN~ 175 (1096)
T KOG1859|consen 103 ISIFP--FRSLRVLELRGCDLSTAKGL----QELRHQLEKLICHN-SLDALRHVFASCGGDISNSPVWNKLATASFSYNR 175 (1096)
T ss_pred ceecc--ccceeeEEecCcchhhhhhh----HHHHHhhhhhhhhc-cHHHHHHHHHHhccccccchhhhhHhhhhcchhh
Confidence 34444 78888888888544332222 22222244443332 2211 1111124467888999999
Q ss_pred CcccCCC-cCCCCccEEEccCCCCCCCcCCCCCCCCCEEeCcCCCCcccccc-ccCCCCCcEEEcCCCCCCCcccccCCC
Q 035577 409 IVRITAG-ALPRGLHILNLSKNNISTIEGLRELTRLRVLDLSYNRILRIGHG-LASCSSLKELYLAGNKISEVEGLHRLL 486 (662)
Q Consensus 409 L~~l~~~-~~~~~L~~L~Ls~N~L~~lp~l~~L~~L~~LdLs~N~Ls~Lp~~-l~~L~~L~~L~Ls~N~L~~l~~l~~L~ 486 (662)
+..+... .+.+.|+.|+|++|+++.+..+..++.|++|||++|.+..+|.- ...+. |+.|+|++|.++.+..+.+|.
T Consensus 176 L~~mD~SLqll~ale~LnLshNk~~~v~~Lr~l~~LkhLDlsyN~L~~vp~l~~~gc~-L~~L~lrnN~l~tL~gie~Lk 254 (1096)
T KOG1859|consen 176 LVLMDESLQLLPALESLNLSHNKFTKVDNLRRLPKLKHLDLSYNCLRHVPQLSMVGCK-LQLLNLRNNALTTLRGIENLK 254 (1096)
T ss_pred HHhHHHHHHHHHHhhhhccchhhhhhhHHHHhcccccccccccchhccccccchhhhh-heeeeecccHHHhhhhHHhhh
Confidence 9766532 23389999999999999999999999999999999999999853 33344 999999999999999999999
Q ss_pred CCcEEECCCCccCccccchHhhhcCCCCcEEEccCCCCCCC
Q 035577 487 KLTVLDLRFNKISTAKCLGQLAANYNSLQAISLEGNPAQKN 527 (662)
Q Consensus 487 ~L~~LdLs~N~Ls~l~~l~~~l~~l~~L~~L~Ls~N~l~~~ 527 (662)
+|+.|||++|-|.+...+.. +..+..|+.|+|.|||+.|.
T Consensus 255 sL~~LDlsyNll~~hseL~p-LwsLs~L~~L~LeGNPl~c~ 294 (1096)
T KOG1859|consen 255 SLYGLDLSYNLLSEHSELEP-LWSLSSLIVLWLEGNPLCCA 294 (1096)
T ss_pred hhhccchhHhhhhcchhhhH-HHHHHHHHHHhhcCCccccC
Confidence 99999999999998765443 36778999999999999884
No 33
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=98.89 E-value=2.7e-10 Score=126.20 Aligned_cols=235 Identities=32% Similarity=0.388 Sum_probs=138.9
Q ss_pred cCCCCCccCCC-CCCCCCCceeecCCccCCCcchhhhcCCCCCCCCcccCCCCCCCCccCCcc--cCCCCCceeeCCccc
Q 035577 284 PDENSVKKLQG-ESLHEQWDKLPSKHFKIKRIKEWVNDLQHCSPLEESDETSVSNDQVKRDPK--VLNGSTAVKVDGKVT 360 (662)
Q Consensus 284 ls~N~I~~L~~-~s~l~~L~~L~l~~~si~~L~~~~~~L~~l~~L~~L~~l~ls~n~L~~~p~--~l~~L~~L~l~~~~~ 360 (662)
+..|.|..+.. ...+..++.|.+.+|.++.+... +..+..|.. ++++.|.|..+.. .+..|..|.+.++.+
T Consensus 79 l~~n~i~~~~~~l~~~~~l~~l~l~~n~i~~i~~~---l~~~~~L~~---L~ls~N~I~~i~~l~~l~~L~~L~l~~N~i 152 (414)
T KOG0531|consen 79 LRQNLIAKILNHLSKLKSLEALDLYDNKIEKIENL---LSSLVNLQV---LDLSFNKITKLEGLSTLTLLKELNLSGNLI 152 (414)
T ss_pred cchhhhhhhhcccccccceeeeeccccchhhcccc---hhhhhcchh---eeccccccccccchhhccchhhheeccCcc
Confidence 44445544222 44455555555555555555421 222222222 2223333322211 133355555555544
Q ss_pred cchhhhHHHhhhccCCccEEEccCCCCCCCCC--CCCCCCCCEEEccCCCCcccCCCcCCCCccEEEccCCCCCCCcCCC
Q 035577 361 AGMEAVTKYISSLSASATTVQLSNHGLVVIPF--LSAFVSLKVLNLSGNAIVRITAGALPRGLHILNLSKNNISTIEGLR 438 (662)
Q Consensus 361 ~~l~~l~~~l~~l~~sL~~L~Ls~N~L~~lp~--l~~L~~L~~L~Ls~N~L~~l~~~~~~~~L~~L~Ls~N~L~~lp~l~ 438 (662)
..+..+.. +. .|+.+++++|.++.+.. +..+..|+.+++.+|.+..+........+..+++..|.++.+.++.
T Consensus 153 ~~~~~~~~----l~-~L~~l~l~~n~i~~ie~~~~~~~~~l~~l~l~~n~i~~i~~~~~~~~l~~~~l~~n~i~~~~~l~ 227 (414)
T KOG0531|consen 153 SDISGLES----LK-SLKLLDLSYNRIVDIENDELSELISLEELDLGGNSIREIEGLDLLKKLVLLSLLDNKISKLEGLN 227 (414)
T ss_pred hhccCCcc----ch-hhhcccCCcchhhhhhhhhhhhccchHHHhccCCchhcccchHHHHHHHHhhcccccceeccCcc
Confidence 44433222 22 26677777777776665 4677777777777777766654444455666677777777766655
Q ss_pred CCCC--CCEEeCcCCCCccccccccCCCCCcEEEcCCCCCCCcccccCCCCCcEEECCCCccCccccchHh--hhcCCCC
Q 035577 439 ELTR--LRVLDLSYNRILRIGHGLASCSSLKELYLAGNKISEVEGLHRLLKLTVLDLRFNKISTAKCLGQL--AANYNSL 514 (662)
Q Consensus 439 ~L~~--L~~LdLs~N~Ls~Lp~~l~~L~~L~~L~Ls~N~L~~l~~l~~L~~L~~LdLs~N~Ls~l~~l~~~--l~~l~~L 514 (662)
.+.. |+.+++++|.+..++..+..+..+..|++..|++..+..+.....+..+.+..|.+......... ....+.+
T Consensus 228 ~~~~~~L~~l~l~~n~i~~~~~~~~~~~~l~~l~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 307 (414)
T KOG0531|consen 228 ELVMLHLRELYLSGNRISRSPEGLENLKNLPVLDLSSNRISNLEGLERLPKLSELWLNDNKLALSEAISQEYITSAAPTL 307 (414)
T ss_pred cchhHHHHHHhcccCccccccccccccccccccchhhccccccccccccchHHHhccCcchhcchhhhhccccccccccc
Confidence 5555 78888888888877666777788888888888888777777777777777777776643211111 3556778
Q ss_pred cEEEccCCCCCCCCC
Q 035577 515 QAISLEGNPAQKNVG 529 (662)
Q Consensus 515 ~~L~Ls~N~l~~~~~ 529 (662)
+.+.+..|++....+
T Consensus 308 ~~~~~~~~~~~~~~~ 322 (414)
T KOG0531|consen 308 VTLTLELNPIRKISS 322 (414)
T ss_pred cccccccCccccccc
Confidence 888888888776444
No 34
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=98.86 E-value=2.7e-10 Score=122.10 Aligned_cols=205 Identities=20% Similarity=0.159 Sum_probs=145.2
Q ss_pred CCCCCceeeCCccccchhhhHHHhhhccCCccEEEccCCCCCCCCC----CCCCCCCCEEEccCCCCcccCCCcC---CC
Q 035577 347 LNGSTAVKVDGKVTAGMEAVTKYISSLSASATTVQLSNHGLVVIPF----LSAFVSLKVLNLSGNAIVRITAGAL---PR 419 (662)
Q Consensus 347 l~~L~~L~l~~~~~~~l~~l~~~l~~l~~sL~~L~Ls~N~L~~lp~----l~~L~~L~~L~Ls~N~L~~l~~~~~---~~ 419 (662)
+..|+...|++......+.- .+...++. ++.|||+.|-|..+-. ...|++|+.|+|+.|.+........ .+
T Consensus 120 ~kkL~~IsLdn~~V~~~~~~-~~~k~~~~-v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l~ 197 (505)
T KOG3207|consen 120 LKKLREISLDNYRVEDAGIE-EYSKILPN-VRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLLS 197 (505)
T ss_pred HHhhhheeecCccccccchh-hhhhhCCc-ceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhhhh
Confidence 45555555655333322221 44555655 9999999999886542 6889999999999999864332221 27
Q ss_pred CccEEEccCCCCCCC--c-CCCCCCCCCEEeCcCCC-CccccccccCCCCCcEEEcCCCCCCCcc---cccCCCCCcEEE
Q 035577 420 GLHILNLSKNNISTI--E-GLRELTRLRVLDLSYNR-ILRIGHGLASCSSLKELYLAGNKISEVE---GLHRLLKLTVLD 492 (662)
Q Consensus 420 ~L~~L~Ls~N~L~~l--p-~l~~L~~L~~LdLs~N~-Ls~Lp~~l~~L~~L~~L~Ls~N~L~~l~---~l~~L~~L~~Ld 492 (662)
+|+.|.|+.|.|+.- . .+..+++|+.|+|.+|. +..-......+..|++|+|++|.+-+.+ ..+.++.|+.|+
T Consensus 198 ~lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li~~~~~~~~~~l~~L~~Ln 277 (505)
T KOG3207|consen 198 HLKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATSTKILQTLQELDLSNNNLIDFDQGYKVGTLPGLNQLN 277 (505)
T ss_pred hhheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecchhhhhhHHhhccccCCcccccccccccccccchhhhh
Confidence 999999999999942 2 35677899999999995 3322223556789999999999998774 678899999999
Q ss_pred CCCCccCccccchHh-----hhcCCCCcEEEccCCCCCCCCChHHHHHHHHhhCccCceeecCCCCCCcccc
Q 035577 493 LRFNKISTAKCLGQL-----AANYNSLQAISLEGNPAQKNVGDEQLKKNLQSLLPHLVYFNWQPMKASTLKD 559 (662)
Q Consensus 493 Ls~N~Ls~l~~l~~~-----l~~l~~L~~L~Ls~N~l~~~~~~~~l~~~l~~~l~~L~~Ld~~~~~~~~l~~ 559 (662)
++.+.|.++.. ++. ...+++|++|++..|++...-... -+..+++|+.|.+..+.+..-.+
T Consensus 278 ls~tgi~si~~-~d~~s~~kt~~f~kL~~L~i~~N~I~~w~sl~-----~l~~l~nlk~l~~~~n~ln~e~~ 343 (505)
T KOG3207|consen 278 LSSTGIASIAE-PDVESLDKTHTFPKLEYLNISENNIRDWRSLN-----HLRTLENLKHLRITLNYLNKETD 343 (505)
T ss_pred ccccCcchhcC-CCccchhhhcccccceeeecccCccccccccc-----hhhccchhhhhhccccccccccc
Confidence 99999998752 322 356899999999999995321111 23456777777766666555444
No 35
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=98.85 E-value=3.6e-10 Score=125.26 Aligned_cols=148 Identities=42% Similarity=0.526 Sum_probs=101.5
Q ss_pred ccEEEccCCCCCCCCC-CCCCCCCCEEEccCCCCcccCCCcCCCCccEEEccCCCCCCCcCCCCCCCCCEEeCcCCCCcc
Q 035577 377 ATTVQLSNHGLVVIPF-LSAFVSLKVLNLSGNAIVRITAGALPRGLHILNLSKNNISTIEGLRELTRLRVLDLSYNRILR 455 (662)
Q Consensus 377 L~~L~Ls~N~L~~lp~-l~~L~~L~~L~Ls~N~L~~l~~~~~~~~L~~L~Ls~N~L~~lp~l~~L~~L~~LdLs~N~Ls~ 455 (662)
++.|++.+|.|..+.. +..+++|++|+|++|.|+.+........|+.|++++|.|+.++.+..+..|+.+++++|.+..
T Consensus 97 l~~l~l~~n~i~~i~~~l~~~~~L~~L~ls~N~I~~i~~l~~l~~L~~L~l~~N~i~~~~~~~~l~~L~~l~l~~n~i~~ 176 (414)
T KOG0531|consen 97 LEALDLYDNKIEKIENLLSSLVNLQVLDLSFNKITKLEGLSTLTLLKELNLSGNLISDISGLESLKSLKLLDLSYNRIVD 176 (414)
T ss_pred eeeeeccccchhhcccchhhhhcchheeccccccccccchhhccchhhheeccCcchhccCCccchhhhcccCCcchhhh
Confidence 6777777777777776 777778888888888887777665556677888888888877777777788888888887777
Q ss_pred cccc-ccCCCCCcEEEcCCCCCCCcccccCCCCCcEEECCCCccCccccchHhhhcCCCCcEEEccCCCCCC
Q 035577 456 IGHG-LASCSSLKELYLAGNKISEVEGLHRLLKLTVLDLRFNKISTAKCLGQLAANYNSLQAISLEGNPAQK 526 (662)
Q Consensus 456 Lp~~-l~~L~~L~~L~Ls~N~L~~l~~l~~L~~L~~LdLs~N~Ls~l~~l~~~l~~l~~L~~L~Ls~N~l~~ 526 (662)
+... +..+..|+.+++.+|.+..+..+..+..+..+++..|.|+.+..++... +..|+.+++.+|++..
T Consensus 177 ie~~~~~~~~~l~~l~l~~n~i~~i~~~~~~~~l~~~~l~~n~i~~~~~l~~~~--~~~L~~l~l~~n~i~~ 246 (414)
T KOG0531|consen 177 IENDELSELISLEELDLGGNSIREIEGLDLLKKLVLLSLLDNKISKLEGLNELV--MLHLRELYLSGNRISR 246 (414)
T ss_pred hhhhhhhhccchHHHhccCCchhcccchHHHHHHHHhhcccccceeccCcccch--hHHHHHHhcccCcccc
Confidence 6543 4677777777777777777665555555666666666666554222110 0025666666666643
No 36
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=98.84 E-value=8e-10 Score=115.86 Aligned_cols=241 Identities=17% Similarity=0.180 Sum_probs=149.8
Q ss_pred CCCCCceeecCCccCCC--cchhhhcCCCCCCCCcccCCCCCCCCccCCcccCCCCCceeeCCccccchhhhHHHhhhcc
Q 035577 297 LHEQWDKLPSKHFKIKR--IKEWVNDLQHCSPLEESDETSVSNDQVKRDPKVLNGSTAVKVDGKVTAGMEAVTKYISSLS 374 (662)
Q Consensus 297 ~l~~L~~L~l~~~si~~--L~~~~~~L~~l~~L~~L~~l~ls~n~L~~~p~~l~~L~~L~l~~~~~~~l~~l~~~l~~l~ 374 (662)
.+..+++|++++|++.. .......+...+.|+..+..+.-... +...++..+..+...+...+
T Consensus 28 ~~~s~~~l~lsgnt~G~EAa~~i~~~L~~~~~L~~v~~sd~ftGR---------------~~~Ei~e~L~~l~~aL~~~~ 92 (382)
T KOG1909|consen 28 PMDSLTKLDLSGNTFGTEAARAIAKVLASKKELREVNLSDMFTGR---------------LKDEIPEALKMLSKALLGCP 92 (382)
T ss_pred ccCceEEEeccCCchhHHHHHHHHHHHhhcccceeeehHhhhcCC---------------cHHHHHHHHHHHHHHHhcCC
Confidence 34566778888887653 22223445555544443221111111 11122233334445555555
Q ss_pred CCccEEEccCCCCC--CCCC----CCCCCCCCEEEccCCCCcccCCCc---------------CCCCccEEEccCCCCCC
Q 035577 375 ASATTVQLSNHGLV--VIPF----LSAFVSLKVLNLSGNAIVRITAGA---------------LPRGLHILNLSKNNIST 433 (662)
Q Consensus 375 ~sL~~L~Ls~N~L~--~lp~----l~~L~~L~~L~Ls~N~L~~l~~~~---------------~~~~L~~L~Ls~N~L~~ 433 (662)
.|+.|+||+|.|. .++. +..+..|+.|.|.+|.+.....+. .++.|+++...+|++..
T Consensus 93 -~L~~ldLSDNA~G~~g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rNrlen 171 (382)
T KOG1909|consen 93 -KLQKLDLSDNAFGPKGIRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGRALFELAVNKKAASKPKLRVFICGRNRLEN 171 (382)
T ss_pred -ceeEeeccccccCccchHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCcceEEEEeecccccc
Confidence 3888888888775 3332 667788888888888775443322 22678888888888876
Q ss_pred Cc------CCCCCCCCCEEeCcCCCCc-----cccccccCCCCCcEEEcCCCCCCCc------ccccCCCCCcEEECCCC
Q 035577 434 IE------GLRELTRLRVLDLSYNRIL-----RIGHGLASCSSLKELYLAGNKISEV------EGLHRLLKLTVLDLRFN 496 (662)
Q Consensus 434 lp------~l~~L~~L~~LdLs~N~Ls-----~Lp~~l~~L~~L~~L~Ls~N~L~~l------~~l~~L~~L~~LdLs~N 496 (662)
-+ .|...+.|+.+.++.|.|. -+...|..+++|++|||.+|-++.. ..+..++.|+.|++++|
T Consensus 172 ~ga~~~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~El~l~dc 251 (382)
T KOG1909|consen 172 GGATALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLRELNLGDC 251 (382)
T ss_pred ccHHHHHHHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhcccchheeeccccc
Confidence 43 3666788888888888775 2334577888888888888887643 35677778888888888
Q ss_pred ccCccc--cchHhh-hcCCCCcEEEccCCCCCCCCChHHHHHHHHhhCccCceeecCCCCCC
Q 035577 497 KISTAK--CLGQLA-ANYNSLQAISLEGNPAQKNVGDEQLKKNLQSLLPHLVYFNWQPMKAS 555 (662)
Q Consensus 497 ~Ls~l~--~l~~~l-~~l~~L~~L~Ls~N~l~~~~~~~~l~~~l~~~l~~L~~Ld~~~~~~~ 555 (662)
.+..-. .+...+ ...++|+.|.|.+|.++..- ...........|.|..|++..|.+.
T Consensus 252 ll~~~Ga~a~~~al~~~~p~L~vl~l~gNeIt~da--~~~la~~~~ek~dL~kLnLngN~l~ 311 (382)
T KOG1909|consen 252 LLENEGAIAFVDALKESAPSLEVLELAGNEITRDA--ALALAACMAEKPDLEKLNLNGNRLG 311 (382)
T ss_pred ccccccHHHHHHHHhccCCCCceeccCcchhHHHH--HHHHHHHHhcchhhHHhcCCccccc
Confidence 887631 222222 34678888888888886521 1223334445788888888888774
No 37
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.69 E-value=3e-09 Score=109.45 Aligned_cols=222 Identities=17% Similarity=0.212 Sum_probs=148.7
Q ss_pred CCCCCceeeCCccccchhhhHHHhhhccCCccEEEccCCCCC-CCCCC-CCCCCCCEEEccCCCCcccCCCcCC---CCc
Q 035577 347 LNGSTAVKVDGKVTAGMEAVTKYISSLSASATTVQLSNHGLV-VIPFL-SAFVSLKVLNLSGNAIVRITAGALP---RGL 421 (662)
Q Consensus 347 l~~L~~L~l~~~~~~~l~~l~~~l~~l~~sL~~L~Ls~N~L~-~lp~l-~~L~~L~~L~Ls~N~L~~l~~~~~~---~~L 421 (662)
...++.+++.++.+..+..+...+.++|. +++|+|+.|.+. .|..+ ..+.+|+.|-|.+..+..-....+. +.+
T Consensus 70 ~~~v~elDL~~N~iSdWseI~~ile~lP~-l~~LNls~N~L~s~I~~lp~p~~nl~~lVLNgT~L~w~~~~s~l~~lP~v 148 (418)
T KOG2982|consen 70 VTDVKELDLTGNLISDWSEIGAILEQLPA-LTTLNLSCNSLSSDIKSLPLPLKNLRVLVLNGTGLSWTQSTSSLDDLPKV 148 (418)
T ss_pred hhhhhhhhcccchhccHHHHHHHHhcCcc-ceEeeccCCcCCCccccCcccccceEEEEEcCCCCChhhhhhhhhcchhh
Confidence 45667777777777777777777777776 777777777765 22222 3566777777777766433333332 566
Q ss_pred cEEEccCCCCCCCc----CCCCC-CCCCEEeCcCCCCcccc---ccccCCCCCcEEEcCCCCCCCc---ccccCCCCCcE
Q 035577 422 HILNLSKNNISTIE----GLREL-TRLRVLDLSYNRILRIG---HGLASCSSLKELYLAGNKISEV---EGLHRLLKLTV 490 (662)
Q Consensus 422 ~~L~Ls~N~L~~lp----~l~~L-~~L~~LdLs~N~Ls~Lp---~~l~~L~~L~~L~Ls~N~L~~l---~~l~~L~~L~~ 490 (662)
+.|+++.|.+..+. ..... +.+.+|.+-.|.....- .--.-++++..+.+..|.|... .....++.+-.
T Consensus 149 telHmS~N~~rq~n~Dd~c~e~~s~~v~tlh~~~c~~~~w~~~~~l~r~Fpnv~sv~v~e~PlK~~s~ek~se~~p~~~~ 228 (418)
T KOG2982|consen 149 TELHMSDNSLRQLNLDDNCIEDWSTEVLTLHQLPCLEQLWLNKNKLSRIFPNVNSVFVCEGPLKTESSEKGSEPFPSLSC 228 (418)
T ss_pred hhhhhccchhhhhccccccccccchhhhhhhcCCcHHHHHHHHHhHHhhcccchheeeecCcccchhhcccCCCCCcchh
Confidence 77777777554321 11111 23444444444322110 0012347888899999988776 35667778889
Q ss_pred EECCCCccCccccchHhhhcCCCCcEEEccCCCCCCCCChHHHHHHHHhhCccCceeecCCCCCCcccccccceeeeccC
Q 035577 491 LDLRFNKISTAKCLGQLAANYNSLQAISLEGNPAQKNVGDEQLKKNLQSLLPHLVYFNWQPMKASTLKDASDRSVRLGIS 570 (662)
Q Consensus 491 LdLs~N~Ls~l~~l~~~l~~l~~L~~L~Ls~N~l~~~~~~~~l~~~l~~~l~~L~~Ld~~~~~~~~l~~~~~~~~~~~~s 570 (662)
|+|+.|+|..+..+ +.+..++.|..|.+.+||+........-+..+++.+++++.||.+.+.-.++.+...+.++....
T Consensus 229 LnL~~~~idswasv-D~Ln~f~~l~dlRv~~~Pl~d~l~~~err~llIaRL~~v~vLNGskIss~er~dSEr~fVRyym~ 307 (418)
T KOG2982|consen 229 LNLGANNIDSWASV-DALNGFPQLVDLRVSENPLSDPLRGGERRFLLIARLTKVQVLNGSKISSRERKDSERRFVRYYMS 307 (418)
T ss_pred hhhcccccccHHHH-HHHcCCchhheeeccCCcccccccCCcceEEEEeeccceEEecCcccchhhhhhhHHHHHHHHhh
Confidence 99999999998764 45589999999999999998765544455678899999999999988877777776666554443
No 38
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=98.56 E-value=4.8e-08 Score=102.67 Aligned_cols=211 Identities=23% Similarity=0.242 Sum_probs=159.2
Q ss_pred CCCCCceeeCCccccc--hhhhHHHhhhccCCccEEEccCCCC----CCCCC--------CCCCCCCCEEEccCCCCccc
Q 035577 347 LNGSTAVKVDGKVTAG--MEAVTKYISSLSASATTVQLSNHGL----VVIPF--------LSAFVSLKVLNLSGNAIVRI 412 (662)
Q Consensus 347 l~~L~~L~l~~~~~~~--l~~l~~~l~~l~~sL~~L~Ls~N~L----~~lp~--------l~~L~~L~~L~Ls~N~L~~l 412 (662)
...++.++|+|+.+.. ...+...+...+ .|+..++++--. ..+|. +...+.|++||||.|.|..-
T Consensus 29 ~~s~~~l~lsgnt~G~EAa~~i~~~L~~~~-~L~~v~~sd~ftGR~~~Ei~e~L~~l~~aL~~~~~L~~ldLSDNA~G~~ 107 (382)
T KOG1909|consen 29 MDSLTKLDLSGNTFGTEAARAIAKVLASKK-ELREVNLSDMFTGRLKDEIPEALKMLSKALLGCPKLQKLDLSDNAFGPK 107 (382)
T ss_pred cCceEEEeccCCchhHHHHHHHHHHHhhcc-cceeeehHhhhcCCcHHHHHHHHHHHHHHHhcCCceeEeeccccccCcc
Confidence 5778899999976532 223445566666 488888887532 24442 56777999999999998532
Q ss_pred CCCcCC------CCccEEEccCCCCCCCc---------------CCCCCCCCCEEeCcCCCCccc-----cccccCCCCC
Q 035577 413 TAGALP------RGLHILNLSKNNISTIE---------------GLRELTRLRVLDLSYNRILRI-----GHGLASCSSL 466 (662)
Q Consensus 413 ~~~~~~------~~L~~L~Ls~N~L~~lp---------------~l~~L~~L~~LdLs~N~Ls~L-----p~~l~~L~~L 466 (662)
....|- ..|++|+|.+|.|.... ....-+.|+++...+|++..- ...|...+.|
T Consensus 108 g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rNrlen~ga~~~A~~~~~~~~l 187 (382)
T KOG1909|consen 108 GIRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGRALFELAVNKKAASKPKLRVFICGRNRLENGGATALAEAFQSHPTL 187 (382)
T ss_pred chHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCcceEEEEeeccccccccHHHHHHHHHhcccc
Confidence 222221 68999999999988531 245667999999999998744 3457788999
Q ss_pred cEEEcCCCCCCCc------ccccCCCCCcEEECCCCccCcc--ccchHhhhcCCCCcEEEccCCCCCCCCChHHHHHHHH
Q 035577 467 KELYLAGNKISEV------EGLHRLLKLTVLDLRFNKISTA--KCLGQLAANYNSLQAISLEGNPAQKNVGDEQLKKNLQ 538 (662)
Q Consensus 467 ~~L~Ls~N~L~~l------~~l~~L~~L~~LdLs~N~Ls~l--~~l~~~l~~l~~L~~L~Ls~N~l~~~~~~~~l~~~l~ 538 (662)
+.+.+..|.|..- ..+..++.|++|||++|-++.- ..+...+..+++|+.|+++++.+... +...+...+.
T Consensus 188 eevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~El~l~dcll~~~-Ga~a~~~al~ 266 (382)
T KOG1909|consen 188 EEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLRELNLGDCLLENE-GAIAFVDALK 266 (382)
T ss_pred ceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhcccchheeecccccccccc-cHHHHHHHHh
Confidence 9999999998642 3688999999999999999863 24567788899999999999998754 4455667777
Q ss_pred hhCccCceeecCCCCCCcccc
Q 035577 539 SLLPHLVYFNWQPMKASTLKD 559 (662)
Q Consensus 539 ~~l~~L~~Ld~~~~~~~~l~~ 559 (662)
...|.|..+++..+.++....
T Consensus 267 ~~~p~L~vl~l~gNeIt~da~ 287 (382)
T KOG1909|consen 267 ESAPSLEVLELAGNEITRDAA 287 (382)
T ss_pred ccCCCCceeccCcchhHHHHH
Confidence 779999999999988765443
No 39
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=98.49 E-value=4.8e-08 Score=95.93 Aligned_cols=140 Identities=29% Similarity=0.372 Sum_probs=88.5
Q ss_pred CCEEEccCCCCcccCC-CcCCCCccEEEccCCCCCCCcCCCCCCCCCEEeCcCCCCccccccccCCCCCcEEEcCCCCCC
Q 035577 399 LKVLNLSGNAIVRITA-GALPRGLHILNLSKNNISTIEGLRELTRLRVLDLSYNRILRIGHGLASCSSLKELYLAGNKIS 477 (662)
Q Consensus 399 L~~L~Ls~N~L~~l~~-~~~~~~L~~L~Ls~N~L~~lp~l~~L~~L~~LdLs~N~Ls~Lp~~l~~L~~L~~L~Ls~N~L~ 477 (662)
=+.++|.+..+..+.. +.+......++|++|.|..++.|..++.|.+|.|++|+|+.|.+.+..
T Consensus 21 e~e~~LR~lkip~ienlg~~~d~~d~iDLtdNdl~~l~~lp~l~rL~tLll~nNrIt~I~p~L~~--------------- 85 (233)
T KOG1644|consen 21 ERELDLRGLKIPVIENLGATLDQFDAIDLTDNDLRKLDNLPHLPRLHTLLLNNNRITRIDPDLDT--------------- 85 (233)
T ss_pred ccccccccccccchhhccccccccceecccccchhhcccCCCccccceEEecCCcceeeccchhh---------------
Confidence 3455555555543332 112244555566666555555555555555555555555555433322
Q ss_pred CcccccCCCCCcEEECCCCccCccccchHhhhcCCCCcEEEccCCCCCCCCChHHHHHHHHhhCccCceeecCCCCCCcc
Q 035577 478 EVEGLHRLLKLTVLDLRFNKISTAKCLGQLAANYNSLQAISLEGNPAQKNVGDEQLKKNLQSLLPHLVYFNWQPMKASTL 557 (662)
Q Consensus 478 ~l~~l~~L~~L~~LdLs~N~Ls~l~~l~~~l~~l~~L~~L~Ls~N~l~~~~~~~~l~~~l~~~l~~L~~Ld~~~~~~~~l 557 (662)
.+++|..|.|.+|.|..+.++..+ ..+++|++|.+-+||++. ...|+.+++..+|+|+.||++.++..++
T Consensus 86 ------~~p~l~~L~LtnNsi~~l~dl~pL-a~~p~L~~Ltll~Npv~~---k~~YR~yvl~klp~l~~LDF~kVt~~ER 155 (233)
T KOG1644|consen 86 ------FLPNLKTLILTNNSIQELGDLDPL-ASCPKLEYLTLLGNPVEH---KKNYRLYVLYKLPSLRTLDFQKVTRKER 155 (233)
T ss_pred ------hccccceEEecCcchhhhhhcchh-ccCCccceeeecCCchhc---ccCceeEEEEecCcceEeehhhhhHHHH
Confidence 234566666666666655443333 677889999999999864 4668889999999999999999998888
Q ss_pred cccccc
Q 035577 558 KDASDR 563 (662)
Q Consensus 558 ~~~~~~ 563 (662)
..+...
T Consensus 156 ~~A~~~ 161 (233)
T KOG1644|consen 156 EEAEVF 161 (233)
T ss_pred HHHHHH
Confidence 776554
No 40
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.42 E-value=1.8e-08 Score=102.92 Aligned_cols=119 Identities=27% Similarity=0.326 Sum_probs=103.7
Q ss_pred CCCCCCEEeCcCCCCccccccccCCCCCcEEEcCCCCCCCcccccCCCCCcEEECCCCccCccccchHhhhcCCCCcEEE
Q 035577 439 ELTRLRVLDLSYNRILRIGHGLASCSSLKELYLAGNKISEVEGLHRLLKLTVLDLRFNKISTAKCLGQLAANYNSLQAIS 518 (662)
Q Consensus 439 ~L~~L~~LdLs~N~Ls~Lp~~l~~L~~L~~L~Ls~N~L~~l~~l~~L~~L~~LdLs~N~Ls~l~~l~~~l~~l~~L~~L~ 518 (662)
.+.+.+.|++.++.|+.|. ....|+.|++|.|+-|+|+.+..+..|++|+.|+|+.|.|.++..+.. +.++++|+.|+
T Consensus 17 dl~~vkKLNcwg~~L~DIs-ic~kMp~lEVLsLSvNkIssL~pl~rCtrLkElYLRkN~I~sldEL~Y-LknlpsLr~LW 94 (388)
T KOG2123|consen 17 DLENVKKLNCWGCGLDDIS-ICEKMPLLEVLSLSVNKISSLAPLQRCTRLKELYLRKNCIESLDELEY-LKNLPSLRTLW 94 (388)
T ss_pred HHHHhhhhcccCCCccHHH-HHHhcccceeEEeeccccccchhHHHHHHHHHHHHHhcccccHHHHHH-HhcCchhhhHh
Confidence 3567788999999999774 456899999999999999999999999999999999999999977554 48999999999
Q ss_pred ccCCCCCCCCChHHHHHHHHhhCccCceeecCCCCCCccccc
Q 035577 519 LEGNPAQKNVGDEQLKKNLQSLLPHLVYFNWQPMKASTLKDA 560 (662)
Q Consensus 519 Ls~N~l~~~~~~~~l~~~l~~~l~~L~~Ld~~~~~~~~l~~~ 560 (662)
|..||.++.-+ ..|+..++..+|+|+.||...+...++.++
T Consensus 95 L~ENPCc~~ag-~nYR~~VLR~LPnLkKLDnv~VteeEle~A 135 (388)
T KOG2123|consen 95 LDENPCCGEAG-QNYRRKVLRVLPNLKKLDNVPVTEEELEEA 135 (388)
T ss_pred hccCCcccccc-hhHHHHHHHHcccchhccCccccHHHHHHH
Confidence 99999887655 569999999999999999999887776554
No 41
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.40 E-value=1.8e-07 Score=75.18 Aligned_cols=55 Identities=33% Similarity=0.482 Sum_probs=24.5
Q ss_pred ccEEEccCCCCCCCc--CCCCCCCCCEEeCcCCCCcccccc-ccCCCCCcEEEcCCCC
Q 035577 421 LHILNLSKNNISTIE--GLRELTRLRVLDLSYNRILRIGHG-LASCSSLKELYLAGNK 475 (662)
Q Consensus 421 L~~L~Ls~N~L~~lp--~l~~L~~L~~LdLs~N~Ls~Lp~~-l~~L~~L~~L~Ls~N~ 475 (662)
|++|+|++|+|+.++ .|..+++|++|++++|.|+.++.. |..+++|++|++++|+
T Consensus 3 L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~ 60 (61)
T PF13855_consen 3 LESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNN 60 (61)
T ss_dssp ESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSS
T ss_pred CcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCc
Confidence 344444444444333 244444444444444444444332 4444444444444443
No 42
>PLN03150 hypothetical protein; Provisional
Probab=98.39 E-value=6.8e-07 Score=104.22 Aligned_cols=108 Identities=23% Similarity=0.254 Sum_probs=86.0
Q ss_pred CccEEEccCCCCCC-Cc-CCCCCCCCCEEeCcCCCCc-cccccccCCCCCcEEEcCCCCCCCc-c-cccCCCCCcEEECC
Q 035577 420 GLHILNLSKNNIST-IE-GLRELTRLRVLDLSYNRIL-RIGHGLASCSSLKELYLAGNKISEV-E-GLHRLLKLTVLDLR 494 (662)
Q Consensus 420 ~L~~L~Ls~N~L~~-lp-~l~~L~~L~~LdLs~N~Ls-~Lp~~l~~L~~L~~L~Ls~N~L~~l-~-~l~~L~~L~~LdLs 494 (662)
.++.|+|++|.+++ +| .+..+++|+.|+|++|.|. .+|..++.+++|+.|+|++|+|++. | .+..+++|+.|+|+
T Consensus 419 ~v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls 498 (623)
T PLN03150 419 FIDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLN 498 (623)
T ss_pred EEEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECc
Confidence 37788888888875 34 6888899999999999987 7888899999999999999999854 4 68889999999999
Q ss_pred CCccCccccchHhhhc-CCCCcEEEccCCCCCCCCC
Q 035577 495 FNKISTAKCLGQLAAN-YNSLQAISLEGNPAQKNVG 529 (662)
Q Consensus 495 ~N~Ls~l~~l~~~l~~-l~~L~~L~Ls~N~l~~~~~ 529 (662)
+|.+++. +|..+.. +.++..+++.+|+..|.++
T Consensus 499 ~N~l~g~--iP~~l~~~~~~~~~l~~~~N~~lc~~p 532 (623)
T PLN03150 499 GNSLSGR--VPAALGGRLLHRASFNFTDNAGLCGIP 532 (623)
T ss_pred CCccccc--CChHHhhccccCceEEecCCccccCCC
Confidence 9998864 3555444 3467788999998766443
No 43
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.39 E-value=2e-07 Score=74.91 Aligned_cols=56 Identities=30% Similarity=0.454 Sum_probs=30.3
Q ss_pred CCCEEeCcCCCCcccccc-ccCCCCCcEEEcCCCCCCCcc--cccCCCCCcEEECCCCc
Q 035577 442 RLRVLDLSYNRILRIGHG-LASCSSLKELYLAGNKISEVE--GLHRLLKLTVLDLRFNK 497 (662)
Q Consensus 442 ~L~~LdLs~N~Ls~Lp~~-l~~L~~L~~L~Ls~N~L~~l~--~l~~L~~L~~LdLs~N~ 497 (662)
+|++|++++|+|+.+|.. |..+++|++|++++|.|+.++ .|..+++|+.|++++|+
T Consensus 2 ~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~ 60 (61)
T PF13855_consen 2 NLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNN 60 (61)
T ss_dssp TESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSS
T ss_pred cCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCc
Confidence 455566666655555543 455555555555555555552 34555555555555554
No 44
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=98.32 E-value=7.7e-09 Score=116.54 Aligned_cols=123 Identities=30% Similarity=0.323 Sum_probs=76.9
Q ss_pred ccEEEccCCCCCCCCC-CCCCCCCCEEEccCCCCcccCCCcCCCCccEEEccCCCCCCCcCCCCC-CCCCEEeCcCCCCc
Q 035577 377 ATTVQLSNHGLVVIPF-LSAFVSLKVLNLSGNAIVRITAGALPRGLHILNLSKNNISTIEGLREL-TRLRVLDLSYNRIL 454 (662)
Q Consensus 377 L~~L~Ls~N~L~~lp~-l~~L~~L~~L~Ls~N~L~~l~~~~~~~~L~~L~Ls~N~L~~lp~l~~L-~~L~~LdLs~N~Ls 454 (662)
|...++++|.++.+.. +.-++.|+.|||++|+++.+......+.|++|||++|.|..+|.++.- ..|+.|.|.+|.++
T Consensus 166 L~~a~fsyN~L~~mD~SLqll~ale~LnLshNk~~~v~~Lr~l~~LkhLDlsyN~L~~vp~l~~~gc~L~~L~lrnN~l~ 245 (1096)
T KOG1859|consen 166 LATASFSYNRLVLMDESLQLLPALESLNLSHNKFTKVDNLRRLPKLKHLDLSYNCLRHVPQLSMVGCKLQLLNLRNNALT 245 (1096)
T ss_pred HhhhhcchhhHHhHHHHHHHHHHhhhhccchhhhhhhHHHHhcccccccccccchhccccccchhhhhheeeeecccHHH
Confidence 4456666666666654 666666777777777776655333336677777777777766643211 13777777777776
Q ss_pred cccccccCCCCCcEEEcCCCCCCCc---ccccCCCCCcEEECCCCccCc
Q 035577 455 RIGHGLASCSSLKELYLAGNKISEV---EGLHRLLKLTVLDLRFNKIST 500 (662)
Q Consensus 455 ~Lp~~l~~L~~L~~L~Ls~N~L~~l---~~l~~L~~L~~LdLs~N~Ls~ 500 (662)
.+- ++.+|.+|+.|||++|-|.+. ..+..|..|+.|.|.+|.+.-
T Consensus 246 tL~-gie~LksL~~LDlsyNll~~hseL~pLwsLs~L~~L~LeGNPl~c 293 (1096)
T KOG1859|consen 246 TLR-GIENLKSLYGLDLSYNLLSEHSELEPLWSLSSLIVLWLEGNPLCC 293 (1096)
T ss_pred hhh-hHHhhhhhhccchhHhhhhcchhhhHHHHHHHHHHHhhcCCcccc
Confidence 664 566777777777777766654 245556667777777776653
No 45
>PLN03150 hypothetical protein; Provisional
Probab=98.29 E-value=1.7e-06 Score=100.99 Aligned_cols=104 Identities=25% Similarity=0.364 Sum_probs=86.9
Q ss_pred CCCEEeCcCCCCc-cccccccCCCCCcEEEcCCCCCCC-cc-cccCCCCCcEEECCCCccCccccchHhhhcCCCCcEEE
Q 035577 442 RLRVLDLSYNRIL-RIGHGLASCSSLKELYLAGNKISE-VE-GLHRLLKLTVLDLRFNKISTAKCLGQLAANYNSLQAIS 518 (662)
Q Consensus 442 ~L~~LdLs~N~Ls-~Lp~~l~~L~~L~~L~Ls~N~L~~-l~-~l~~L~~L~~LdLs~N~Ls~l~~l~~~l~~l~~L~~L~ 518 (662)
.++.|+|++|.+. .+|..+..+++|+.|+|++|.|.+ +| .+..+++|+.|+|++|+|++. +|..+..+++|+.|+
T Consensus 419 ~v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~--iP~~l~~L~~L~~L~ 496 (623)
T PLN03150 419 FIDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGS--IPESLGQLTSLRILN 496 (623)
T ss_pred EEEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCC--CchHHhcCCCCCEEE
Confidence 4789999999998 788889999999999999999985 45 689999999999999999975 378889999999999
Q ss_pred ccCCCCCCCCChHHHHHHHHhhCccCceeecCCC
Q 035577 519 LEGNPAQKNVGDEQLKKNLQSLLPHLVYFNWQPM 552 (662)
Q Consensus 519 Ls~N~l~~~~~~~~l~~~l~~~l~~L~~Ld~~~~ 552 (662)
|++|.+.|.+|.. +.....++..+++..+
T Consensus 497 Ls~N~l~g~iP~~-----l~~~~~~~~~l~~~~N 525 (623)
T PLN03150 497 LNGNSLSGRVPAA-----LGGRLLHRASFNFTDN 525 (623)
T ss_pred CcCCcccccCChH-----HhhccccCceEEecCC
Confidence 9999999988753 2233345556665554
No 46
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=98.29 E-value=7.7e-07 Score=87.61 Aligned_cols=119 Identities=29% Similarity=0.397 Sum_probs=87.6
Q ss_pred ccEEEccCCCCCCCCCCC-CCCCCCEEEccCCCCcccCCCcCCCCccEEEccCCCCCCCc-CC-CCCCCCCEEeCcCCCC
Q 035577 377 ATTVQLSNHGLVVIPFLS-AFVSLKVLNLSGNAIVRITAGALPRGLHILNLSKNNISTIE-GL-RELTRLRVLDLSYNRI 453 (662)
Q Consensus 377 L~~L~Ls~N~L~~lp~l~-~L~~L~~L~Ls~N~L~~l~~~~~~~~L~~L~Ls~N~L~~lp-~l-~~L~~L~~LdLs~N~L 453 (662)
-+.++|.+.++..+..++ -+.+...+||++|.|..++.....+.|.+|.|.+|+|+.+. .+ ..+++|..|.|.+|.|
T Consensus 21 e~e~~LR~lkip~ienlg~~~d~~d~iDLtdNdl~~l~~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi 100 (233)
T KOG1644|consen 21 ERELDLRGLKIPVIENLGATLDQFDAIDLTDNDLRKLDNLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSI 100 (233)
T ss_pred ccccccccccccchhhccccccccceecccccchhhcccCCCccccceEEecCCcceeeccchhhhccccceEEecCcch
Confidence 457888888776555433 23477899999999988875555589999999999999985 44 3456799999999998
Q ss_pred cccccc--ccCCCCCcEEEcCCCCCCCcc-----cccCCCCCcEEECCC
Q 035577 454 LRIGHG--LASCSSLKELYLAGNKISEVE-----GLHRLLKLTVLDLRF 495 (662)
Q Consensus 454 s~Lp~~--l~~L~~L~~L~Ls~N~L~~l~-----~l~~L~~L~~LdLs~ 495 (662)
..+.+- +..|+.|++|.+-+|.++... -+..+++|++||+..
T Consensus 101 ~~l~dl~pLa~~p~L~~Ltll~Npv~~k~~YR~yvl~klp~l~~LDF~k 149 (233)
T KOG1644|consen 101 QELGDLDPLASCPKLEYLTLLGNPVEHKKNYRLYVLYKLPSLRTLDFQK 149 (233)
T ss_pred hhhhhcchhccCCccceeeecCCchhcccCceeEEEEecCcceEeehhh
Confidence 876532 667778888888777776653 345566666666554
No 47
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=98.12 E-value=7.8e-07 Score=90.92 Aligned_cols=247 Identities=18% Similarity=0.141 Sum_probs=166.5
Q ss_pred CCCCceeecCCccCCC-cchh-hhcCCCCCCCCcccCCCCCCCCccCCcccCCCCCceeeCCccccchhhhHHHhhhccC
Q 035577 298 HEQWDKLPSKHFKIKR-IKEW-VNDLQHCSPLEESDETSVSNDQVKRDPKVLNGSTAVKVDGKVTAGMEAVTKYISSLSA 375 (662)
Q Consensus 298 l~~L~~L~l~~~si~~-L~~~-~~~L~~l~~L~~L~~l~ls~n~L~~~p~~l~~L~~L~l~~~~~~~l~~l~~~l~~l~~ 375 (662)
+..+++++++.|.+.. -..| ...+.+-..|...+..+.... ..-......+..+...+..+|.
T Consensus 29 ~d~~~evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd~ftg---------------r~kde~~~~L~~Ll~aLlkcp~ 93 (388)
T COG5238 29 MDELVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSDAFTG---------------RDKDELYSNLVMLLKALLKCPR 93 (388)
T ss_pred hcceeEEeccCCcccHHHHHHHHHHHhhhcceeEeehhhhhhc---------------ccHHHHHHHHHHHHHHHhcCCc
Confidence 4456677888887754 2223 444554444444221111000 0111233445556666777776
Q ss_pred CccEEEccCCCCC-CCCC-----CCCCCCCCEEEccCCCCcccCCCcCC---------------CCccEEEccCCCCCCC
Q 035577 376 SATTVQLSNHGLV-VIPF-----LSAFVSLKVLNLSGNAIVRITAGALP---------------RGLHILNLSKNNISTI 434 (662)
Q Consensus 376 sL~~L~Ls~N~L~-~lp~-----l~~L~~L~~L~Ls~N~L~~l~~~~~~---------------~~L~~L~Ls~N~L~~l 434 (662)
++.++|++|.+. ..|. ++.-+.|.+|.|++|.+..+..+.+. +.|+++....|++...
T Consensus 94 -l~~v~LSDNAfg~~~~e~L~d~is~~t~l~HL~l~NnGlGp~aG~rigkal~~la~nKKaa~kp~Le~vicgrNRleng 172 (388)
T COG5238 94 -LQKVDLSDNAFGSEFPEELGDLISSSTDLVHLKLNNNGLGPIAGGRIGKALFHLAYNKKAADKPKLEVVICGRNRLENG 172 (388)
T ss_pred -ceeeeccccccCcccchHHHHHHhcCCCceeEEeecCCCCccchhHHHHHHHHHHHHhhhccCCCceEEEeccchhccC
Confidence 999999999886 3332 78889999999999999766554322 6799999999999875
Q ss_pred c------CCCCCCCCCEEeCcCCCCcc-----c-cccccCCCCCcEEEcCCCCCCCc------ccccCCCCCcEEECCCC
Q 035577 435 E------GLRELTRLRVLDLSYNRILR-----I-GHGLASCSSLKELYLAGNKISEV------EGLHRLLKLTVLDLRFN 496 (662)
Q Consensus 435 p------~l~~L~~L~~LdLs~N~Ls~-----L-p~~l~~L~~L~~L~Ls~N~L~~l------~~l~~L~~L~~LdLs~N 496 (662)
+ .+..-..|+.+.+.+|.|.. + -.++..+.+|++|+|..|-++-. ..+..++.|+.|.+..|
T Consensus 173 s~~~~a~~l~sh~~lk~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtft~~gS~~La~al~~W~~lrEL~lnDC 252 (388)
T COG5238 173 SKELSAALLESHENLKEVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFTLEGSRYLADALCEWNLLRELRLNDC 252 (388)
T ss_pred cHHHHHHHHHhhcCceeEEeeecCcCcchhHHHHHHHHHHhCcceeeeccccchhhhhHHHHHHHhcccchhhhccccch
Confidence 4 24444689999999998861 1 12356778999999999988754 25667778999999999
Q ss_pred ccCccc--cchHhhh--cCCCCcEEEccCCCCCCC-CChHHHHHHHHhhCccCceeecCCCCCCccccc
Q 035577 497 KISTAK--CLGQLAA--NYNSLQAISLEGNPAQKN-VGDEQLKKNLQSLLPHLVYFNWQPMKASTLKDA 560 (662)
Q Consensus 497 ~Ls~l~--~l~~~l~--~l~~L~~L~Ls~N~l~~~-~~~~~l~~~l~~~l~~L~~Ld~~~~~~~~l~~~ 560 (662)
.++.-. .+-..|. ..++|+.|-+..|...+. +-...+.......+|-|..|.+.++.+.+..+.
T Consensus 253 lls~~G~~~v~~~f~e~~~p~l~~L~~~Yne~~~~~i~~~~l~~~e~~~~p~L~~le~ngNr~~E~~d~ 321 (388)
T COG5238 253 LLSNEGVKSVLRRFNEKFVPNLMPLPGDYNERRGGIILDISLNEFEQDAVPLLVDLERNGNRIKELADF 321 (388)
T ss_pred hhccccHHHHHHHhhhhcCCCccccccchhhhcCceeeeechhhhhhcccHHHHHHHHccCcchhHHHH
Confidence 888632 1112221 357889999999987663 344456777888899999888888888776654
No 48
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=97.95 E-value=8.8e-06 Score=61.34 Aligned_cols=39 Identities=36% Similarity=0.494 Sum_probs=18.4
Q ss_pred CCCEEeCcCCCCccccccccCCCCCcEEEcCCCCCCCcc
Q 035577 442 RLRVLDLSYNRILRIGHGLASCSSLKELYLAGNKISEVE 480 (662)
Q Consensus 442 ~L~~LdLs~N~Ls~Lp~~l~~L~~L~~L~Ls~N~L~~l~ 480 (662)
+|++|++++|+|+.+|..+++|++|+.|++++|+|++++
T Consensus 2 ~L~~L~l~~N~i~~l~~~l~~l~~L~~L~l~~N~i~~i~ 40 (44)
T PF12799_consen 2 NLEELDLSNNQITDLPPELSNLPNLETLNLSNNPISDIS 40 (44)
T ss_dssp T-SEEEETSSS-SSHGGHGTTCTTSSEEEETSSCCSBEG
T ss_pred cceEEEccCCCCcccCchHhCCCCCCEEEecCCCCCCCc
Confidence 445555555555555444455555555555555554443
No 49
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=97.95 E-value=3.8e-07 Score=84.78 Aligned_cols=106 Identities=22% Similarity=0.271 Sum_probs=56.6
Q ss_pred ccEEEccCCCCCCCc-CC-CCCCCCCEEeCcCCCCccccccccCCCCCcEEEcCCCCCCCcc-cccCCCCCcEEECCCCc
Q 035577 421 LHILNLSKNNISTIE-GL-RELTRLRVLDLSYNRILRIGHGLASCSSLKELYLAGNKISEVE-GLHRLLKLTVLDLRFNK 497 (662)
Q Consensus 421 L~~L~Ls~N~L~~lp-~l-~~L~~L~~LdLs~N~Ls~Lp~~l~~L~~L~~L~Ls~N~L~~l~-~l~~L~~L~~LdLs~N~ 497 (662)
|+..+|++|.+..+| .| ...+.++.|+|++|.|+.+|..+..++.|+.|+++.|.|...+ .+..|.+|..|+.-+|.
T Consensus 55 l~~i~ls~N~fk~fp~kft~kf~t~t~lNl~~neisdvPeE~Aam~aLr~lNl~~N~l~~~p~vi~~L~~l~~Lds~~na 134 (177)
T KOG4579|consen 55 LTKISLSDNGFKKFPKKFTIKFPTATTLNLANNEISDVPEELAAMPALRSLNLRFNPLNAEPRVIAPLIKLDMLDSPENA 134 (177)
T ss_pred EEEEecccchhhhCCHHHhhccchhhhhhcchhhhhhchHHHhhhHHhhhcccccCccccchHHHHHHHhHHHhcCCCCc
Confidence 333444444444443 12 2334566666666666666666666666666666666666553 34446666666776666
Q ss_pred cCccccchHhhhcCCCCcEEEccCCCCCCCCC
Q 035577 498 ISTAKCLGQLAANYNSLQAISLEGNPAQKNVG 529 (662)
Q Consensus 498 Ls~l~~l~~~l~~l~~L~~L~Ls~N~l~~~~~ 529 (662)
+..++. ..+...++. ...+.+++|.+.++
T Consensus 135 ~~eid~-dl~~s~~~a--l~~lgnepl~~~~~ 163 (177)
T KOG4579|consen 135 RAEIDV-DLFYSSLPA--LIKLGNEPLGDETK 163 (177)
T ss_pred cccCcH-HHhccccHH--HHHhcCCcccccCc
Confidence 666541 111112222 23346666665443
No 50
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=97.87 E-value=1.2e-05 Score=96.71 Aligned_cols=121 Identities=29% Similarity=0.346 Sum_probs=72.4
Q ss_pred ccEEEccCCCCCCCCCCCCCCCCCEEEccCCC--CcccCCCcCC--CCccEEEccCC-CCCCCc-CCCCCCCCCEEeCcC
Q 035577 377 ATTVQLSNHGLVVIPFLSAFVSLKVLNLSGNA--IVRITAGALP--RGLHILNLSKN-NISTIE-GLRELTRLRVLDLSY 450 (662)
Q Consensus 377 L~~L~Ls~N~L~~lp~l~~L~~L~~L~Ls~N~--L~~l~~~~~~--~~L~~L~Ls~N-~L~~lp-~l~~L~~L~~LdLs~ 450 (662)
++.+.+-+|.+..++.-...+.|+.|-+..|. +..++.+.|. +.|++|||++| .+..+| .++.|-+|++|+|++
T Consensus 525 ~rr~s~~~~~~~~~~~~~~~~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~~ 604 (889)
T KOG4658|consen 525 VRRMSLMNNKIEHIAGSSENPKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLDLSD 604 (889)
T ss_pred eeEEEEeccchhhccCCCCCCccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhcccccC
Confidence 55666666666666543344466666666664 5555544343 66677777755 455566 466666777777777
Q ss_pred CCCccccccccCCCCCcEEEcCCCC-CCCcccc-cCCCCCcEEECCCCc
Q 035577 451 NRILRIGHGLASCSSLKELYLAGNK-ISEVEGL-HRLLKLTVLDLRFNK 497 (662)
Q Consensus 451 N~Ls~Lp~~l~~L~~L~~L~Ls~N~-L~~l~~l-~~L~~L~~LdLs~N~ 497 (662)
..+..+|.++++|..|.+|++..+. +..++.+ ..+.+|++|.+..-.
T Consensus 605 t~I~~LP~~l~~Lk~L~~Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~~s~ 653 (889)
T KOG4658|consen 605 TGISHLPSGLGNLKKLIYLNLEVTGRLESIPGILLELQSLRVLRLPRSA 653 (889)
T ss_pred CCccccchHHHHHHhhheeccccccccccccchhhhcccccEEEeeccc
Confidence 7777777667777777777766653 2233333 336666666665443
No 51
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=97.87 E-value=4e-07 Score=84.67 Aligned_cols=124 Identities=23% Similarity=0.226 Sum_probs=92.7
Q ss_pred ccEEEccCCCCCCCCC----CCCCCCCCEEEccCCCCcccCCCcCC--CCccEEEccCCCCCCCc-CCCCCCCCCEEeCc
Q 035577 377 ATTVQLSNHGLVVIPF----LSAFVSLKVLNLSGNAIVRITAGALP--RGLHILNLSKNNISTIE-GLRELTRLRVLDLS 449 (662)
Q Consensus 377 L~~L~Ls~N~L~~lp~----l~~L~~L~~L~Ls~N~L~~l~~~~~~--~~L~~L~Ls~N~L~~lp-~l~~L~~L~~LdLs 449 (662)
+..++|+.|.|-.++. +.....|+..+|++|.+..+|..... +.++.|+|++|.|+.+| .+..++.|+.|+++
T Consensus 29 ~h~ldLssc~lm~i~davy~l~~~~el~~i~ls~N~fk~fp~kft~kf~t~t~lNl~~neisdvPeE~Aam~aLr~lNl~ 108 (177)
T KOG4579|consen 29 LHFLDLSSCQLMYIADAVYMLSKGYELTKISLSDNGFKKFPKKFTIKFPTATTLNLANNEISDVPEELAAMPALRSLNLR 108 (177)
T ss_pred hhhcccccchhhHHHHHHHHHhCCceEEEEecccchhhhCCHHHhhccchhhhhhcchhhhhhchHHHhhhHHhhhcccc
Confidence 4567888888776653 66777888889999998877754322 57889999999999987 68899999999999
Q ss_pred CCCCccccccccCCCCCcEEEcCCCCCCCcc-cccCCCCCcEEECCCCccCc
Q 035577 450 YNRILRIGHGLASCSSLKELYLAGNKISEVE-GLHRLLKLTVLDLRFNKIST 500 (662)
Q Consensus 450 ~N~Ls~Lp~~l~~L~~L~~L~Ls~N~L~~l~-~l~~L~~L~~LdLs~N~Ls~ 500 (662)
.|.|...|.-+..|.+|-.|+..+|.+..++ .+..-..+-..++.++.+.+
T Consensus 109 ~N~l~~~p~vi~~L~~l~~Lds~~na~~eid~dl~~s~~~al~~lgnepl~~ 160 (177)
T KOG4579|consen 109 FNPLNAEPRVIAPLIKLDMLDSPENARAEIDVDLFYSSLPALIKLGNEPLGD 160 (177)
T ss_pred cCccccchHHHHHHHhHHHhcCCCCccccCcHHHhccccHHHHHhcCCcccc
Confidence 9999988888888999999999999888775 22111222223345555554
No 52
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=97.87 E-value=2.4e-05 Score=80.25 Aligned_cols=206 Identities=22% Similarity=0.257 Sum_probs=148.5
Q ss_pred CCCCCceeeCCcccc--chhhhHHHhhhccCCccEEEccCCCCC----CC--------CCCCCCCCCCEEEccCCCCccc
Q 035577 347 LNGSTAVKVDGKVTA--GMEAVTKYISSLSASATTVQLSNHGLV----VI--------PFLSAFVSLKVLNLSGNAIVRI 412 (662)
Q Consensus 347 l~~L~~L~l~~~~~~--~l~~l~~~l~~l~~sL~~L~Ls~N~L~----~l--------p~l~~L~~L~~L~Ls~N~L~~l 412 (662)
+..++.++++|+.+. ....+...+.... +|+..+++.--.. .+ +.+..++.|+..+||.|.|..-
T Consensus 29 ~d~~~evdLSGNtigtEA~e~l~~~ia~~~-~L~vvnfsd~ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNAfg~~ 107 (388)
T COG5238 29 MDELVEVDLSGNTIGTEAMEELCNVIANVR-NLRVVNFSDAFTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNAFGSE 107 (388)
T ss_pred hcceeEEeccCCcccHHHHHHHHHHHhhhc-ceeEeehhhhhhcccHHHHHHHHHHHHHHHhcCCcceeeeccccccCcc
Confidence 456777788886653 2333444555433 3777777764322 22 3478899999999999998532
Q ss_pred CCCcC------CCCccEEEccCCCCCCCcC---------------CCCCCCCCEEeCcCCCCcccccc-----ccCCCCC
Q 035577 413 TAGAL------PRGLHILNLSKNNISTIEG---------------LRELTRLRVLDLSYNRILRIGHG-----LASCSSL 466 (662)
Q Consensus 413 ~~~~~------~~~L~~L~Ls~N~L~~lp~---------------l~~L~~L~~LdLs~N~Ls~Lp~~-----l~~L~~L 466 (662)
-+..+ ...|.+|.|++|.+..+.+ ...-+.|++..+..|++...|.. +..-..|
T Consensus 108 ~~e~L~d~is~~t~l~HL~l~NnGlGp~aG~rigkal~~la~nKKaa~kp~Le~vicgrNRlengs~~~~a~~l~sh~~l 187 (388)
T COG5238 108 FPEELGDLISSSTDLVHLKLNNNGLGPIAGGRIGKALFHLAYNKKAADKPKLEVVICGRNRLENGSKELSAALLESHENL 187 (388)
T ss_pred cchHHHHHHhcCCCceeEEeecCCCCccchhHHHHHHHHHHHHhhhccCCCceEEEeccchhccCcHHHHHHHHHhhcCc
Confidence 22111 1689999999999886531 34568999999999999865532 4445789
Q ss_pred cEEEcCCCCCCCc-------ccccCCCCCcEEECCCCccCcc--ccchHhhhcCCCCcEEEccCCCCCCCCChHHHHHHH
Q 035577 467 KELYLAGNKISEV-------EGLHRLLKLTVLDLRFNKISTA--KCLGQLAANYNSLQAISLEGNPAQKNVGDEQLKKNL 537 (662)
Q Consensus 467 ~~L~Ls~N~L~~l-------~~l~~L~~L~~LdLs~N~Ls~l--~~l~~~l~~l~~L~~L~Ls~N~l~~~~~~~~l~~~l 537 (662)
+++.+..|.|..- -.+..+.+|++|||..|-++.. ..+..+++.++.|+.|.+.++-++..-...-++.+-
T Consensus 188 k~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtft~~gS~~La~al~~W~~lrEL~lnDClls~~G~~~v~~~f~ 267 (388)
T COG5238 188 KEVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFTLEGSRYLADALCEWNLLRELRLNDCLLSNEGVKSVLRRFN 267 (388)
T ss_pred eeEEeeecCcCcchhHHHHHHHHHHhCcceeeeccccchhhhhHHHHHHHhcccchhhhccccchhhccccHHHHHHHhh
Confidence 9999999998742 2467788999999999998863 345677788899999999999987765555566666
Q ss_pred HhhCccCceeecCCCC
Q 035577 538 QSLLPHLVYFNWQPMK 553 (662)
Q Consensus 538 ~~~l~~L~~Ld~~~~~ 553 (662)
....|+|..|.+.++.
T Consensus 268 e~~~p~l~~L~~~Yne 283 (388)
T COG5238 268 EKFVPNLMPLPGDYNE 283 (388)
T ss_pred hhcCCCccccccchhh
Confidence 6778888888777664
No 53
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=97.87 E-value=1.1e-05 Score=97.13 Aligned_cols=120 Identities=29% Similarity=0.378 Sum_probs=78.6
Q ss_pred ccEEEccCCC--CCCCCC--CCCCCCCCEEEccCC-CCcccCCCcCC-CCccEEEccCCCCCCCc-CCCCCCCCCEEeCc
Q 035577 377 ATTVQLSNHG--LVVIPF--LSAFVSLKVLNLSGN-AIVRITAGALP-RGLHILNLSKNNISTIE-GLRELTRLRVLDLS 449 (662)
Q Consensus 377 L~~L~Ls~N~--L~~lp~--l~~L~~L~~L~Ls~N-~L~~l~~~~~~-~~L~~L~Ls~N~L~~lp-~l~~L~~L~~LdLs 449 (662)
|+.|-+..|. +..++. |..++.|++|||++| .+..+|...-. -+|++|+|++..|+.+| ++.+|..|.+|++.
T Consensus 547 L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~~t~I~~LP~~l~~Lk~L~~Lnl~ 626 (889)
T KOG4658|consen 547 LRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLDLSDTGISHLPSGLGNLKKLIYLNLE 626 (889)
T ss_pred cceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhcccccCCCccccchHHHHHHhhheeccc
Confidence 6777777775 666664 777888888888865 44555543332 57888888888888877 68888888888888
Q ss_pred CCCCc-cccccccCCCCCcEEEcCCCCCCC----cccccCCCCCcEEECCCC
Q 035577 450 YNRIL-RIGHGLASCSSLKELYLAGNKISE----VEGLHRLLKLTVLDLRFN 496 (662)
Q Consensus 450 ~N~Ls-~Lp~~l~~L~~L~~L~Ls~N~L~~----l~~l~~L~~L~~LdLs~N 496 (662)
++.-. .+|..+..|.+|++|.+..-.... +..+..+..|+.|.....
T Consensus 627 ~~~~l~~~~~i~~~L~~Lr~L~l~~s~~~~~~~~l~el~~Le~L~~ls~~~~ 678 (889)
T KOG4658|consen 627 VTGRLESIPGILLELQSLRVLRLPRSALSNDKLLLKELENLEHLENLSITIS 678 (889)
T ss_pred cccccccccchhhhcccccEEEeeccccccchhhHHhhhcccchhhheeecc
Confidence 76533 444445558888888776554221 134555556665555433
No 54
>PRK15386 type III secretion protein GogB; Provisional
Probab=97.79 E-value=0.00011 Score=80.62 Aligned_cols=68 Identities=19% Similarity=0.405 Sum_probs=40.6
Q ss_pred ccEEEccCCCCCCCCCCCCCCCCCEEEccC-CCCcccCCCcCCCCccEEEccCC-CCCCCcCCCCCCCCCEEeCcCCC
Q 035577 377 ATTVQLSNHGLVVIPFLSAFVSLKVLNLSG-NAIVRITAGALPRGLHILNLSKN-NISTIEGLRELTRLRVLDLSYNR 452 (662)
Q Consensus 377 L~~L~Ls~N~L~~lp~l~~L~~L~~L~Ls~-N~L~~l~~~~~~~~L~~L~Ls~N-~L~~lp~l~~L~~L~~LdLs~N~ 452 (662)
++.|++++|.|+.+|.+ ..+|+.|++++ +.++.+| +.++.+|+.|.+++| .|..+| ..|+.|+++.+.
T Consensus 54 l~~L~Is~c~L~sLP~L--P~sLtsL~Lsnc~nLtsLP-~~LP~nLe~L~Ls~Cs~L~sLP-----~sLe~L~L~~n~ 123 (426)
T PRK15386 54 SGRLYIKDCDIESLPVL--PNELTEITIENCNNLTTLP-GSIPEGLEKLTVCHCPEISGLP-----ESVRSLEIKGSA 123 (426)
T ss_pred CCEEEeCCCCCcccCCC--CCCCcEEEccCCCCcccCC-chhhhhhhheEccCcccccccc-----cccceEEeCCCC
Confidence 66777777777766632 23577777765 3454444 344567777777766 555444 246666666554
No 55
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=97.74 E-value=3.3e-05 Score=58.21 Aligned_cols=39 Identities=36% Similarity=0.478 Sum_probs=29.0
Q ss_pred CCCcEEEcCCCCCCCccc-ccCCCCCcEEECCCCccCccc
Q 035577 464 SSLKELYLAGNKISEVEG-LHRLLKLTVLDLRFNKISTAK 502 (662)
Q Consensus 464 ~~L~~L~Ls~N~L~~l~~-l~~L~~L~~LdLs~N~Ls~l~ 502 (662)
++|++|+|++|+|+.++. +..+++|+.|++++|+|++++
T Consensus 1 ~~L~~L~l~~N~i~~l~~~l~~l~~L~~L~l~~N~i~~i~ 40 (44)
T PF12799_consen 1 KNLEELDLSNNQITDLPPELSNLPNLETLNLSNNPISDIS 40 (44)
T ss_dssp TT-SEEEETSSS-SSHGGHGTTCTTSSEEEETSSCCSBEG
T ss_pred CcceEEEccCCCCcccCchHhCCCCCCEEEecCCCCCCCc
Confidence 467888888888888865 888888888888888888764
No 56
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=97.70 E-value=3.3e-05 Score=79.04 Aligned_cols=114 Identities=23% Similarity=0.318 Sum_probs=69.8
Q ss_pred CCCEEeCcCCCCccccccccCCCCCcEEEcCCC--CCC-Ccc-cccCCCCCcEEECCCCccCccccchHhhhcCCCCcEE
Q 035577 442 RLRVLDLSYNRILRIGHGLASCSSLKELYLAGN--KIS-EVE-GLHRLLKLTVLDLRFNKISTAKCLGQLAANYNSLQAI 517 (662)
Q Consensus 442 ~L~~LdLs~N~Ls~Lp~~l~~L~~L~~L~Ls~N--~L~-~l~-~l~~L~~L~~LdLs~N~Ls~l~~l~~~l~~l~~L~~L 517 (662)
.|+.|.+.+..++++. .|-.|++|+.|.++.| ++. +++ -...+++|++|+|++|+|..+..+..+ ..+.+|..|
T Consensus 44 ~le~ls~~n~gltt~~-~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lstl~pl-~~l~nL~~L 121 (260)
T KOG2739|consen 44 ELELLSVINVGLTTLT-NFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLSTLRPL-KELENLKSL 121 (260)
T ss_pred chhhhhhhccceeecc-cCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccccccccchh-hhhcchhhh
Confidence 3444444444444332 2334555566666665 222 121 223346777777777777665443333 566778888
Q ss_pred EccCCCCCCCCChHHHHHHHHhhCccCceeecCCCCCCccccc
Q 035577 518 SLEGNPAQKNVGDEQLKKNLQSLLPHLVYFNWQPMKASTLKDA 560 (662)
Q Consensus 518 ~Ls~N~l~~~~~~~~l~~~l~~~l~~L~~Ld~~~~~~~~l~~~ 560 (662)
++.+|..+. ...|+..+...+++|.|||...+.-.+.+..
T Consensus 122 dl~n~~~~~---l~dyre~vf~ll~~L~~LD~~dv~~~Ea~~~ 161 (260)
T KOG2739|consen 122 DLFNCSVTN---LDDYREKVFLLLPSLKYLDGCDVDGEEAPEA 161 (260)
T ss_pred hcccCCccc---cccHHHHHHHHhhhhccccccccCCcccccc
Confidence 888887766 3458889999999999999988876555443
No 57
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.54 E-value=2.7e-05 Score=80.86 Aligned_cols=201 Identities=16% Similarity=0.141 Sum_probs=129.5
Q ss_pred CCCceeeCCccccchhhhHHHhhhccCCccEEEccCCCCCCCC---C-CCCCCCCCEEEccCCCCcccC-CCcCC-CCcc
Q 035577 349 GSTAVKVDGKVTAGMEAVTKYISSLSASATTVQLSNHGLVVIP---F-LSAFVSLKVLNLSGNAIVRIT-AGALP-RGLH 422 (662)
Q Consensus 349 ~L~~L~l~~~~~~~l~~l~~~l~~l~~sL~~L~Ls~N~L~~lp---~-l~~L~~L~~L~Ls~N~L~~l~-~~~~~-~~L~ 422 (662)
.+..|-+.+..+...+... .+......++.|||.+|.|+... . +.+++.|++|+|+.|.+.... ....| .+|+
T Consensus 46 a~ellvln~~~id~~gd~~-~~~~~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~ 124 (418)
T KOG2982|consen 46 ALELLVLNGSIIDNEGDVM-LFGSSVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLR 124 (418)
T ss_pred chhhheecCCCCCcchhHH-HHHHHhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCcccccceE
Confidence 3445555565555444332 34445555889999999998654 3 789999999999999987533 22244 7999
Q ss_pred EEEccCCCCCC--Cc-CCCCCCCCCEEeCcCCCCccc--cc-cccCC-CCCcEEEcCCCCCCCcc----cccCCCCCcEE
Q 035577 423 ILNLSKNNIST--IE-GLRELTRLRVLDLSYNRILRI--GH-GLASC-SSLKELYLAGNKISEVE----GLHRLLKLTVL 491 (662)
Q Consensus 423 ~L~Ls~N~L~~--lp-~l~~L~~L~~LdLs~N~Ls~L--p~-~l~~L-~~L~~L~Ls~N~L~~l~----~l~~L~~L~~L 491 (662)
+|.|.+..+.- .. .+..++.++.|.+|.|.+..+ .+ ..... +.+.+|.+..|...-+. --..++++..+
T Consensus 125 ~lVLNgT~L~w~~~~s~l~~lP~vtelHmS~N~~rq~n~Dd~c~e~~s~~v~tlh~~~c~~~~w~~~~~l~r~Fpnv~sv 204 (418)
T KOG2982|consen 125 VLVLNGTGLSWTQSTSSLDDLPKVTELHMSDNSLRQLNLDDNCIEDWSTEVLTLHQLPCLEQLWLNKNKLSRIFPNVNSV 204 (418)
T ss_pred EEEEcCCCCChhhhhhhhhcchhhhhhhhccchhhhhccccccccccchhhhhhhcCCcHHHHHHHHHhHHhhcccchhe
Confidence 99999988764 22 467888899999998865422 11 11111 24555555554433221 12335688888
Q ss_pred ECCCCccCccccchHhhhcCCCCcEEEccCCCCCCCCChHHHHHHHHhhCccCceeecCCCCCCc
Q 035577 492 DLRFNKISTAKCLGQLAANYNSLQAISLEGNPAQKNVGDEQLKKNLQSLLPHLVYFNWQPMKAST 556 (662)
Q Consensus 492 dLs~N~Ls~l~~l~~~l~~l~~L~~L~Ls~N~l~~~~~~~~l~~~l~~~l~~L~~Ld~~~~~~~~ 556 (662)
.+..|.|.+... ...+..++.+.-|+|+.|.|.. +.-.+ -...+++|+-|....+.+..
T Consensus 205 ~v~e~PlK~~s~-ek~se~~p~~~~LnL~~~~ids----wasvD-~Ln~f~~l~dlRv~~~Pl~d 263 (418)
T KOG2982|consen 205 FVCEGPLKTESS-EKGSEPFPSLSCLNLGANNIDS----WASVD-ALNGFPQLVDLRVSENPLSD 263 (418)
T ss_pred eeecCcccchhh-cccCCCCCcchhhhhccccccc----HHHHH-HHcCCchhheeeccCCcccc
Confidence 899998887643 3334567778889999998854 22222 23567888888777776543
No 58
>PRK15386 type III secretion protein GogB; Provisional
Probab=97.43 E-value=0.00028 Score=77.56 Aligned_cols=75 Identities=20% Similarity=0.268 Sum_probs=58.3
Q ss_pred CCCCCCCEEEccCCCCcccCCCcCCCCccEEEccC-CCCCCCcCCCCCCCCCEEeCcCC-CCccccccccCCCCCcEEEc
Q 035577 394 SAFVSLKVLNLSGNAIVRITAGALPRGLHILNLSK-NNISTIEGLRELTRLRVLDLSYN-RILRIGHGLASCSSLKELYL 471 (662)
Q Consensus 394 ~~L~~L~~L~Ls~N~L~~l~~~~~~~~L~~L~Ls~-N~L~~lp~l~~L~~L~~LdLs~N-~Ls~Lp~~l~~L~~L~~L~L 471 (662)
..+.+++.|++++|.|+.+| .+|.+|+.|.+++ +.++.+|..- ..+|++|++++| .+..+|. .|+.|++
T Consensus 49 ~~~~~l~~L~Is~c~L~sLP--~LP~sLtsL~Lsnc~nLtsLP~~L-P~nLe~L~Ls~Cs~L~sLP~------sLe~L~L 119 (426)
T PRK15386 49 EEARASGRLYIKDCDIESLP--VLPNELTEITIENCNNLTTLPGSI-PEGLEKLTVCHCPEISGLPE------SVRSLEI 119 (426)
T ss_pred HHhcCCCEEEeCCCCCcccC--CCCCCCcEEEccCCCCcccCCchh-hhhhhheEccCccccccccc------ccceEEe
Confidence 34678999999999999998 5788999999987 5777777422 368999999998 7777775 3566666
Q ss_pred CCCCCC
Q 035577 472 AGNKIS 477 (662)
Q Consensus 472 s~N~L~ 477 (662)
..|.+.
T Consensus 120 ~~n~~~ 125 (426)
T PRK15386 120 KGSATD 125 (426)
T ss_pred CCCCCc
Confidence 665543
No 59
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=97.42 E-value=7.8e-05 Score=76.32 Aligned_cols=101 Identities=25% Similarity=0.292 Sum_probs=71.3
Q ss_pred CCccEEEccCCCCCCCcCCCCCCCCCEEeCcCCC--Cc-cccccccCCCCCcEEEcCCCCCCCc---ccccCCCCCcEEE
Q 035577 419 RGLHILNLSKNNISTIEGLRELTRLRVLDLSYNR--IL-RIGHGLASCSSLKELYLAGNKISEV---EGLHRLLKLTVLD 492 (662)
Q Consensus 419 ~~L~~L~Ls~N~L~~lp~l~~L~~L~~LdLs~N~--Ls-~Lp~~l~~L~~L~~L~Ls~N~L~~l---~~l~~L~~L~~Ld 492 (662)
..|+.|.+.+..++.+..+..|++|+.|.++.|. +. .++.....+++|++|+|++|+|..+ +.+..+.+|..|+
T Consensus 43 ~~le~ls~~n~gltt~~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lstl~pl~~l~nL~~Ld 122 (260)
T KOG2739|consen 43 VELELLSVINVGLTTLTNFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLSTLRPLKELENLKSLD 122 (260)
T ss_pred cchhhhhhhccceeecccCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccccccccchhhhhcchhhhh
Confidence 3556666677777777777788888888888884 33 4443455668999999999988765 4677778888999
Q ss_pred CCCCccCcccc-chHhhhcCCCCcEEEc
Q 035577 493 LRFNKISTAKC-LGQLAANYNSLQAISL 519 (662)
Q Consensus 493 Ls~N~Ls~l~~-l~~~l~~l~~L~~L~L 519 (662)
+.+|..+.+.. -...|.-+++|++|+-
T Consensus 123 l~n~~~~~l~dyre~vf~ll~~L~~LD~ 150 (260)
T KOG2739|consen 123 LFNCSVTNLDDYREKVFLLLPSLKYLDG 150 (260)
T ss_pred cccCCccccccHHHHHHHHhhhhccccc
Confidence 99888777532 1244555677777653
No 60
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.32 E-value=0.00017 Score=84.78 Aligned_cols=146 Identities=21% Similarity=0.268 Sum_probs=92.2
Q ss_pred CCCCEEEccCCCCccc--CC--CcCCCCccEEEccCCCCCCCc---CCCCCCCCCEEeCcCCCCccccccccCCCCCcEE
Q 035577 397 VSLKVLNLSGNAIVRI--TA--GALPRGLHILNLSKNNISTIE---GLRELTRLRVLDLSYNRILRIGHGLASCSSLKEL 469 (662)
Q Consensus 397 ~~L~~L~Ls~N~L~~l--~~--~~~~~~L~~L~Ls~N~L~~lp---~l~~L~~L~~LdLs~N~Ls~Lp~~l~~L~~L~~L 469 (662)
.+|++|++++...-.- +. +...|+|+.|.+++-.+..-. -..++++|..||+|+.+++.+ .+++.|++|+.|
T Consensus 122 ~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl-~GIS~LknLq~L 200 (699)
T KOG3665|consen 122 QNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNL-SGISRLKNLQVL 200 (699)
T ss_pred HhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCccCc-HHHhccccHHHH
Confidence 4678888877543210 00 111178888888876665432 356778888888888888877 478888888888
Q ss_pred EcCCCCCCCc---ccccCCCCCcEEECCCCccCccc----cchHhhhcCCCCcEEEccCCCCCCCCChHHHHHHHHhhCc
Q 035577 470 YLAGNKISEV---EGLHRLLKLTVLDLRFNKISTAK----CLGQLAANYNSLQAISLEGNPAQKNVGDEQLKKNLQSLLP 542 (662)
Q Consensus 470 ~Ls~N~L~~l---~~l~~L~~L~~LdLs~N~Ls~l~----~l~~~l~~l~~L~~L~Ls~N~l~~~~~~~~l~~~l~~~l~ 542 (662)
.+.+=.+..- ..+..|++|++||+|........ ..-+.-..+|.|+.||.++..+.. .+.+.+...-|
T Consensus 201 ~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi~~-----~~le~ll~sH~ 275 (699)
T KOG3665|consen 201 SMRNLEFESYQDLIDLFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTDINE-----EILEELLNSHP 275 (699)
T ss_pred hccCCCCCchhhHHHHhcccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCCcchhH-----HHHHHHHHhCc
Confidence 7776666543 36777888888888876555432 111223347788888888776642 34445555556
Q ss_pred cCceee
Q 035577 543 HLVYFN 548 (662)
Q Consensus 543 ~L~~Ld 548 (662)
+|+...
T Consensus 276 ~L~~i~ 281 (699)
T KOG3665|consen 276 NLQQIA 281 (699)
T ss_pred cHhhhh
Confidence 655443
No 61
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.30 E-value=0.0002 Score=84.20 Aligned_cols=143 Identities=24% Similarity=0.249 Sum_probs=87.6
Q ss_pred CccEEEccCCCCC--CCCC--CCCCCCCCEEEccCCCCcccCC----CcCCCCccEEEccCCCCCCCcCCCCCCCCCEEe
Q 035577 376 SATTVQLSNHGLV--VIPF--LSAFVSLKVLNLSGNAIVRITA----GALPRGLHILNLSKNNISTIEGLRELTRLRVLD 447 (662)
Q Consensus 376 sL~~L~Ls~N~L~--~lp~--l~~L~~L~~L~Ls~N~L~~l~~----~~~~~~L~~L~Ls~N~L~~lp~l~~L~~L~~Ld 447 (662)
.|+.|++++...- ..|. -..||+|+.|.+++-.+..-.. ..| ++|..||+|+.+++.+.+++.|.+|+.|.
T Consensus 123 nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sF-pNL~sLDIS~TnI~nl~GIS~LknLq~L~ 201 (699)
T KOG3665|consen 123 NLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASF-PNLRSLDISGTNISNLSGISRLKNLQVLS 201 (699)
T ss_pred hhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhcc-CccceeecCCCCccCcHHHhccccHHHHh
Confidence 3777888776432 2221 3567788888887765532110 111 58888888888888887788888888887
Q ss_pred CcCCCCccccc--cccCCCCCcEEEcCCCCCCCc--------ccccCCCCCcEEECCCCccCccccchHhhhcCCCCcEE
Q 035577 448 LSYNRILRIGH--GLASCSSLKELYLAGNKISEV--------EGLHRLLKLTVLDLRFNKISTAKCLGQLAANYNSLQAI 517 (662)
Q Consensus 448 Ls~N~Ls~Lp~--~l~~L~~L~~L~Ls~N~L~~l--------~~l~~L~~L~~LdLs~N~Ls~l~~l~~~l~~l~~L~~L 517 (662)
+.+=.+..-.. .+.+|++|++||+|....... ..-..|++|+.||.+++.+...- +...+..-++|+.+
T Consensus 202 mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi~~~~-le~ll~sH~~L~~i 280 (699)
T KOG3665|consen 202 MRNLEFESYQDLIDLFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTDINEEI-LEELLNSHPNLQQI 280 (699)
T ss_pred ccCCCCCchhhHHHHhcccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCCcchhHHH-HHHHHHhCccHhhh
Confidence 76655553221 366788888888887654332 22344778888888877766531 23344444555554
Q ss_pred Ecc
Q 035577 518 SLE 520 (662)
Q Consensus 518 ~Ls 520 (662)
-+-
T Consensus 281 ~~~ 283 (699)
T KOG3665|consen 281 AAL 283 (699)
T ss_pred hhh
Confidence 433
No 62
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.94 E-value=5.2e-05 Score=78.11 Aligned_cols=81 Identities=32% Similarity=0.337 Sum_probs=40.2
Q ss_pred CCCCCEEEccCCCCcccCCCcCCCCccEEEccCCCCCCCcCCCCCCCCCEEeCcCCCCcccccc--ccCCCCCcEEEcCC
Q 035577 396 FVSLKVLNLSGNAIVRITAGALPRGLHILNLSKNNISTIEGLRELTRLRVLDLSYNRILRIGHG--LASCSSLKELYLAG 473 (662)
Q Consensus 396 L~~L~~L~Ls~N~L~~l~~~~~~~~L~~L~Ls~N~L~~lp~l~~L~~L~~LdLs~N~Ls~Lp~~--l~~L~~L~~L~Ls~ 473 (662)
+.+.+.|++.++.|.+|.-..-.+.|++|.|+-|+|+.+..|..+++|+.|.|..|.|..|.+- +.++++|+.|.|..
T Consensus 18 l~~vkKLNcwg~~L~DIsic~kMp~lEVLsLSvNkIssL~pl~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~LWL~E 97 (388)
T KOG2123|consen 18 LENVKKLNCWGCGLDDISICEKMPLLEVLSLSVNKISSLAPLQRCTRLKELYLRKNCIESLDELEYLKNLPSLRTLWLDE 97 (388)
T ss_pred HHHhhhhcccCCCccHHHHHHhcccceeEEeeccccccchhHHHHHHHHHHHHHhcccccHHHHHHHhcCchhhhHhhcc
Confidence 3445555555655554432222245555555555555555555555555555555555544322 44555555555555
Q ss_pred CCC
Q 035577 474 NKI 476 (662)
Q Consensus 474 N~L 476 (662)
|..
T Consensus 98 NPC 100 (388)
T KOG2123|consen 98 NPC 100 (388)
T ss_pred CCc
Confidence 433
No 63
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=96.93 E-value=9.6e-05 Score=76.85 Aligned_cols=187 Identities=21% Similarity=0.154 Sum_probs=99.3
Q ss_pred CCCCceeeCCccccchhhhHHHhhhccCCccEEEccCCCCCC-CC-CCCCCCCCCEEEccCC-CCcccCCCcCC---CCc
Q 035577 348 NGSTAVKVDGKVTAGMEAVTKYISSLSASATTVQLSNHGLVV-IP-FLSAFVSLKVLNLSGN-AIVRITAGALP---RGL 421 (662)
Q Consensus 348 ~~L~~L~l~~~~~~~l~~l~~~l~~l~~sL~~L~Ls~N~L~~-lp-~l~~L~~L~~L~Ls~N-~L~~l~~~~~~---~~L 421 (662)
..|+.|+++...+. ...+...+.+... |+.|.|.++++.. +- .++.-.+|+.|||+.+ .|++.....+. +.|
T Consensus 185 sRlq~lDLS~s~it-~stl~~iLs~C~k-Lk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L 262 (419)
T KOG2120|consen 185 SRLQHLDLSNSVIT-VSTLHGILSQCSK-LKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRL 262 (419)
T ss_pred hhhHHhhcchhhee-HHHHHHHHHHHHh-hhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhH
Confidence 34666666664432 2223333444444 6677777777652 22 2666777777777764 44432221111 567
Q ss_pred cEEEccCCCCCCC------cCCCCCCCCCEEeCcCCC----CccccccccCCCCCcEEEcCCCC-CCCc--ccccCCCCC
Q 035577 422 HILNLSKNNISTI------EGLRELTRLRVLDLSYNR----ILRIGHGLASCSSLKELYLAGNK-ISEV--EGLHRLLKL 488 (662)
Q Consensus 422 ~~L~Ls~N~L~~l------p~l~~L~~L~~LdLs~N~----Ls~Lp~~l~~L~~L~~L~Ls~N~-L~~l--~~l~~L~~L 488 (662)
..|+|+++.+..- ..++ ++|+.|+|+++. .+.+..-...+++|..|||++|- |+.- ..|..++.|
T Consensus 263 ~~LNlsWc~l~~~~Vtv~V~his--e~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~~~~~~~kf~~L 340 (419)
T KOG2120|consen 263 DELNLSWCFLFTEKVTVAVAHIS--ETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFKFNYL 340 (419)
T ss_pred hhcCchHhhccchhhhHHHhhhc--hhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccCchHHHHHHhcchh
Confidence 7777777766532 1122 466777777653 12333224567777777777763 3321 356667777
Q ss_pred cEEECCCCccCccccchHhhhcCCCCcEEEccCCCCCCCCChHHHHHHHHhhCccCc
Q 035577 489 TVLDLRFNKISTAKCLGQLAANYNSLQAISLEGNPAQKNVGDEQLKKNLQSLLPHLV 545 (662)
Q Consensus 489 ~~LdLs~N~Ls~l~~l~~~l~~l~~L~~L~Ls~N~l~~~~~~~~l~~~l~~~l~~L~ 545 (662)
++|.|+.|..-....+ -.+...|.|.+|++.|.- ++- -.+.+...+++|+
T Consensus 341 ~~lSlsRCY~i~p~~~-~~l~s~psl~yLdv~g~v-----sdt-~mel~~e~~~~lk 390 (419)
T KOG2120|consen 341 QHLSLSRCYDIIPETL-LELNSKPSLVYLDVFGCV-----SDT-TMELLKEMLSHLK 390 (419)
T ss_pred eeeehhhhcCCChHHe-eeeccCcceEEEEecccc-----Cch-HHHHHHHhCcccc
Confidence 7777776643321111 123456777777766542 221 2234445556655
No 64
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=96.81 E-value=2.9e-05 Score=80.59 Aligned_cols=175 Identities=26% Similarity=0.230 Sum_probs=115.6
Q ss_pred CCccEEEccCCCCCC--CCC-CCCCCCCCEEEccCCCCcccCCCcCC--CCccEEEccCC-CCCCCc---CCCCCCCCCE
Q 035577 375 ASATTVQLSNHGLVV--IPF-LSAFVSLKVLNLSGNAIVRITAGALP--RGLHILNLSKN-NISTIE---GLRELTRLRV 445 (662)
Q Consensus 375 ~sL~~L~Ls~N~L~~--lp~-l~~L~~L~~L~Ls~N~L~~l~~~~~~--~~L~~L~Ls~N-~L~~lp---~l~~L~~L~~ 445 (662)
..++.|||++..|+. +-. +..+..|+.|.|.++++.+-....+. .+|+.|+|+.+ .++... -+..++.|..
T Consensus 185 sRlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~ 264 (419)
T KOG2120|consen 185 SRLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDE 264 (419)
T ss_pred hhhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHhh
Confidence 347789999988873 322 77788899999999988643222233 68999999885 555432 3678888999
Q ss_pred EeCcCCCCcc--ccccccC-CCCCcEEEcCCCC----CCCcc-cccCCCCCcEEECCCCccCccccchHhhhcCCCCcEE
Q 035577 446 LDLSYNRILR--IGHGLAS-CSSLKELYLAGNK----ISEVE-GLHRLLKLTVLDLRFNKISTAKCLGQLAANYNSLQAI 517 (662)
Q Consensus 446 LdLs~N~Ls~--Lp~~l~~-L~~L~~L~Ls~N~----L~~l~-~l~~L~~L~~LdLs~N~Ls~l~~l~~~l~~l~~L~~L 517 (662)
|+|+.+.+.. +-..+.. -++|..|+|++.. .+.+. -...+++|..|||++|..-.-. ....|-.++.|++|
T Consensus 265 LNlsWc~l~~~~Vtv~V~hise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~-~~~~~~kf~~L~~l 343 (419)
T KOG2120|consen 265 LNLSWCFLFTEKVTVAVAHISETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKND-CFQEFFKFNYLQHL 343 (419)
T ss_pred cCchHhhccchhhhHHHhhhchhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccCch-HHHHHHhcchheee
Confidence 9999987751 1111111 2578888888763 22332 2457889999999987433222 34556688999999
Q ss_pred EccCCCCCCCCChHHHHHHHHhhCccCceeecCCCCCC
Q 035577 518 SLEGNPAQKNVGDEQLKKNLQSLLPHLVYFNWQPMKAS 555 (662)
Q Consensus 518 ~Ls~N~l~~~~~~~~l~~~l~~~l~~L~~Ld~~~~~~~ 555 (662)
.|+.+..- ++..+ ......|.|.|||.-.+-..
T Consensus 344 SlsRCY~i---~p~~~--~~l~s~psl~yLdv~g~vsd 376 (419)
T KOG2120|consen 344 SLSRCYDI---IPETL--LELNSKPSLVYLDVFGCVSD 376 (419)
T ss_pred ehhhhcCC---ChHHe--eeeccCcceEEEEeccccCc
Confidence 99887642 22222 23456789999998766443
No 65
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=96.75 E-value=0.0044 Score=56.42 Aligned_cols=114 Identities=18% Similarity=0.390 Sum_probs=49.5
Q ss_pred CCCCCCCCEEEccCCCCcccCCCcCC--CCccEEEccCCCCCCCc--CCCCCCCCCEEeCcCCCCcccccc-ccCCCCCc
Q 035577 393 LSAFVSLKVLNLSGNAIVRITAGALP--RGLHILNLSKNNISTIE--GLRELTRLRVLDLSYNRILRIGHG-LASCSSLK 467 (662)
Q Consensus 393 l~~L~~L~~L~Ls~N~L~~l~~~~~~--~~L~~L~Ls~N~L~~lp--~l~~L~~L~~LdLs~N~Ls~Lp~~-l~~L~~L~ 467 (662)
|..+.+|+.+.+.. .+..+....|. ..|+.+.+..+ +..++ .|..+.+|+.+.+.. .+..++.. |..+++|+
T Consensus 8 F~~~~~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~-~~~~i~~~~F~~~~~l~ 84 (129)
T PF13306_consen 8 FYNCSNLESITFPN-TIKKIGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN-NLKSIGDNAFSNCTNLK 84 (129)
T ss_dssp TTT-TT--EEEETS-T--EE-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS-TT-EE-TTTTTT-TTEC
T ss_pred HhCCCCCCEEEECC-CeeEeChhhccccccccccccccc-ccccceeeeecccccccccccc-ccccccccccccccccc
Confidence 55566666666653 46666666655 45666666654 55554 366666677777654 44455443 55566777
Q ss_pred EEEcCCCCCCCcc--cccCCCCCcEEECCCCccCccccchHhhhcCCCC
Q 035577 468 ELYLAGNKISEVE--GLHRLLKLTVLDLRFNKISTAKCLGQLAANYNSL 514 (662)
Q Consensus 468 ~L~Ls~N~L~~l~--~l~~L~~L~~LdLs~N~Ls~l~~l~~~l~~l~~L 514 (662)
.+.+..+ +..++ .+..+ .|+.+.+.. .+..+. ...|.++++|
T Consensus 85 ~i~~~~~-~~~i~~~~f~~~-~l~~i~~~~-~~~~i~--~~~F~~~~~l 128 (129)
T PF13306_consen 85 NIDIPSN-ITEIGSSSFSNC-NLKEINIPS-NITKIE--ENAFKNCTKL 128 (129)
T ss_dssp EEEETTT--BEEHTTTTTT--T--EEE-TT-B-SS------GGG-----
T ss_pred ccccCcc-ccEEchhhhcCC-CceEEEECC-CccEEC--CccccccccC
Confidence 7776554 44442 45554 666666654 344443 3444555444
No 66
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=95.99 E-value=0.022 Score=51.79 Aligned_cols=107 Identities=26% Similarity=0.483 Sum_probs=62.1
Q ss_pred ccEEEccCCCCCCCCC--CCCCCCCCEEEccCCCCcccCCCcCC--CCccEEEccCCCCCCCc--CCCCCCCCCEEeCcC
Q 035577 377 ATTVQLSNHGLVVIPF--LSAFVSLKVLNLSGNAIVRITAGALP--RGLHILNLSKNNISTIE--GLRELTRLRVLDLSY 450 (662)
Q Consensus 377 L~~L~Ls~N~L~~lp~--l~~L~~L~~L~Ls~N~L~~l~~~~~~--~~L~~L~Ls~N~L~~lp--~l~~L~~L~~LdLs~ 450 (662)
|+.+.+.. .+..++. |..++.|+.+.+.++ +..++...|. ..|+.+.+.+ .+..++ .|..+.+|+.+++..
T Consensus 14 l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~-~~~~i~~~~F~~~~~l~~i~~~~ 90 (129)
T PF13306_consen 14 LESITFPN-TIKKIGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN-NLKSIGDNAFSNCTNLKNIDIPS 90 (129)
T ss_dssp --EEEETS-T--EE-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS-TT-EE-TTTTTT-TTECEEEETT
T ss_pred CCEEEECC-CeeEeChhhccccccccccccccc-ccccceeeeecccccccccccc-cccccccccccccccccccccCc
Confidence 77788774 5777764 888889999999875 8888887777 5799999976 555554 577889999999987
Q ss_pred CCCcccccc-ccCCCCCcEEEcCCCCCCCcc--cccCCCCCc
Q 035577 451 NRILRIGHG-LASCSSLKELYLAGNKISEVE--GLHRLLKLT 489 (662)
Q Consensus 451 N~Ls~Lp~~-l~~L~~L~~L~Ls~N~L~~l~--~l~~L~~L~ 489 (662)
+ +..++.. |..+ .|+.+.+.. .+..++ .|.++++|+
T Consensus 91 ~-~~~i~~~~f~~~-~l~~i~~~~-~~~~i~~~~F~~~~~l~ 129 (129)
T PF13306_consen 91 N-ITEIGSSSFSNC-NLKEINIPS-NITKIEENAFKNCTKLK 129 (129)
T ss_dssp T--BEEHTTTTTT--T--EEE-TT-B-SS----GGG------
T ss_pred c-ccEEchhhhcCC-CceEEEECC-CccEECCccccccccCC
Confidence 6 7777655 6666 999998876 555553 566666653
No 67
>KOG4308 consensus LRR-containing protein [Function unknown]
Probab=94.33 E-value=0.0012 Score=74.73 Aligned_cols=162 Identities=30% Similarity=0.344 Sum_probs=93.6
Q ss_pred hhhHHHhhhccCCccEEEccCCCCCCCC------CCCCC-CCCCEEEccCCCCcccCCCcCC------CCccEEEccCCC
Q 035577 364 EAVTKYISSLSASATTVQLSNHGLVVIP------FLSAF-VSLKVLNLSGNAIVRITAGALP------RGLHILNLSKNN 430 (662)
Q Consensus 364 ~~l~~~l~~l~~sL~~L~Ls~N~L~~lp------~l~~L-~~L~~L~Ls~N~L~~l~~~~~~------~~L~~L~Ls~N~ 430 (662)
..+...+...+. |..|++++|.+.... .+... ..|++|++..|.++......+. ..|+.|+++.|.
T Consensus 105 ~~l~~~l~t~~~-L~~L~l~~n~l~~~g~~~l~~~l~~~~~~l~~L~l~~c~l~~~g~~~l~~~L~~~~~l~~l~l~~n~ 183 (478)
T KOG4308|consen 105 EELAQALKTLPT-LGQLDLSGNNLGDEGARLLCEGLRLPQCLLQTLELVSCSLTSEGAAPLAAVLEKNEHLTELDLSLNG 183 (478)
T ss_pred HHHHHHhccccc-HhHhhcccCCCccHhHHHHHhhcccchHHHHHHHhhcccccccchHHHHHHHhcccchhHHHHHhcc
Confidence 334444444443 666666666665211 12232 4555666666666544332222 456666666666
Q ss_pred CCCC------cC----CCCCCCCCEEeCcCCCCcc-----ccccccCCCC-CcEEEcCCCCCCCc------ccccCC-CC
Q 035577 431 ISTI------EG----LRELTRLRVLDLSYNRILR-----IGHGLASCSS-LKELYLAGNKISEV------EGLHRL-LK 487 (662)
Q Consensus 431 L~~l------p~----l~~L~~L~~LdLs~N~Ls~-----Lp~~l~~L~~-L~~L~Ls~N~L~~l------~~l~~L-~~ 487 (662)
+... .. +....++++|.+++|.++. +...+...+. +..|++..|++.+. +.+..+ ..
T Consensus 184 l~~~g~~~l~~~l~~~~~~~~~le~L~L~~~~~t~~~c~~l~~~l~~~~~~~~el~l~~n~l~d~g~~~L~~~l~~~~~~ 263 (478)
T KOG4308|consen 184 LIELGLLVLSQALESAASPLSSLETLKLSRCGVTSSSCALLDEVLASGESLLRELDLASNKLGDVGVEKLLPCLSVLSET 263 (478)
T ss_pred cchhhhHHHhhhhhhhhcccccHHHHhhhhcCcChHHHHHHHHHHhccchhhHHHHHHhcCcchHHHHHHHHHhcccchh
Confidence 6421 11 3346677777887777662 2222444455 66678888877754 345555 56
Q ss_pred CcEEECCCCccCcc--ccchHhhhcCCCCcEEEccCCCCCC
Q 035577 488 LTVLDLRFNKISTA--KCLGQLAANYNSLQAISLEGNPAQK 526 (662)
Q Consensus 488 L~~LdLs~N~Ls~l--~~l~~~l~~l~~L~~L~Ls~N~l~~ 526 (662)
+++++++.|.|+.. ..+...+..++.++.+.++.|++..
T Consensus 264 l~~l~l~~nsi~~~~~~~L~~~l~~~~~l~~l~l~~n~l~~ 304 (478)
T KOG4308|consen 264 LRVLDLSRNSITEKGVRDLAEVLVSCRQLEELSLSNNPLTD 304 (478)
T ss_pred hhhhhhhcCCccccchHHHHHHHhhhHHHHHhhcccCcccc
Confidence 77888888887763 3345566667778888888888764
No 68
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=94.24 E-value=0.039 Score=62.13 Aligned_cols=93 Identities=26% Similarity=0.395 Sum_probs=62.4
Q ss_pred CCCCCcEEEcCCCCCCCccccc----CCCCCcEEECCCC--ccCccccchHhhhcCCCCcEEEccCCCCCCCCC-hHHHH
Q 035577 462 SCSSLKELYLAGNKISEVEGLH----RLLKLTVLDLRFN--KISTAKCLGQLAANYNSLQAISLEGNPAQKNVG-DEQLK 534 (662)
Q Consensus 462 ~L~~L~~L~Ls~N~L~~l~~l~----~L~~L~~LdLs~N--~Ls~l~~l~~~l~~l~~L~~L~Ls~N~l~~~~~-~~~l~ 534 (662)
+.+.+..|+|++|+|..+..+. ..++|..|+|++| .+.....+... ....|++|.|.|||++.... ...|.
T Consensus 216 n~p~i~sl~lsnNrL~~Ld~~sslsq~apklk~L~LS~N~~~~~~~~el~K~--k~l~Leel~l~GNPlc~tf~~~s~yv 293 (585)
T KOG3763|consen 216 NFPEILSLSLSNNRLYHLDALSSLSQIAPKLKTLDLSHNHSKISSESELDKL--KGLPLEELVLEGNPLCTTFSDRSEYV 293 (585)
T ss_pred CCcceeeeecccchhhchhhhhHHHHhcchhheeecccchhhhcchhhhhhh--cCCCHHHeeecCCccccchhhhHHHH
Confidence 3345556666666666554332 3457888888888 55544333322 23468999999999987553 34567
Q ss_pred HHHHhhCccCceeecCCCCCCc
Q 035577 535 KNLQSLLPHLVYFNWQPMKAST 556 (662)
Q Consensus 535 ~~l~~~l~~L~~Ld~~~~~~~~ 556 (662)
..+....|+|..||...+....
T Consensus 294 ~~i~~~FPKL~~LDG~ev~~~~ 315 (585)
T KOG3763|consen 294 SAIRELFPKLLRLDGVEVQPEV 315 (585)
T ss_pred HHHHHhcchheeecCcccCccc
Confidence 7888999999999988776543
No 69
>KOG4308 consensus LRR-containing protein [Function unknown]
Probab=94.14 E-value=0.0012 Score=74.59 Aligned_cols=178 Identities=24% Similarity=0.224 Sum_probs=127.4
Q ss_pred ccEEEccCCCCCCCC------CCCCCCCCCEEEccCCCCcccCCCc------CC-CCccEEEccCCCCCCCc------CC
Q 035577 377 ATTVQLSNHGLVVIP------FLSAFVSLKVLNLSGNAIVRITAGA------LP-RGLHILNLSKNNISTIE------GL 437 (662)
Q Consensus 377 L~~L~Ls~N~L~~lp------~l~~L~~L~~L~Ls~N~L~~l~~~~------~~-~~L~~L~Ls~N~L~~lp------~l 437 (662)
+..|.|.+|.+..-. .+.....|..|+|++|.+....... .+ ..|++|.+..|.++... .+
T Consensus 89 l~~L~L~~~~l~~~~~~~l~~~l~t~~~L~~L~l~~n~l~~~g~~~l~~~l~~~~~~l~~L~l~~c~l~~~g~~~l~~~L 168 (478)
T KOG4308|consen 89 LLHLSLANNRLGDRGAEELAQALKTLPTLGQLDLSGNNLGDEGARLLCEGLRLPQCLLQTLELVSCSLTSEGAAPLAAVL 168 (478)
T ss_pred HHHhhhhhCccccchHHHHHHHhcccccHhHhhcccCCCccHhHHHHHhhcccchHHHHHHHhhcccccccchHHHHHHH
Confidence 668899999987543 2788899999999999997322111 11 46788999999888642 46
Q ss_pred CCCCCCCEEeCcCCCCc-----cccccc----cCCCCCcEEEcCCCCCCCc------ccccCCCC-CcEEECCCCccCcc
Q 035577 438 RELTRLRVLDLSYNRIL-----RIGHGL----ASCSSLKELYLAGNKISEV------EGLHRLLK-LTVLDLRFNKISTA 501 (662)
Q Consensus 438 ~~L~~L~~LdLs~N~Ls-----~Lp~~l----~~L~~L~~L~Ls~N~L~~l------~~l~~L~~-L~~LdLs~N~Ls~l 501 (662)
.....|+.|+++.|.+. .++..+ ....++++|.|.+|.++.. ..+...+. +..|++..|.+.+.
T Consensus 169 ~~~~~l~~l~l~~n~l~~~g~~~l~~~l~~~~~~~~~le~L~L~~~~~t~~~c~~l~~~l~~~~~~~~el~l~~n~l~d~ 248 (478)
T KOG4308|consen 169 EKNEHLTELDLSLNGLIELGLLVLSQALESAASPLSSLETLKLSRCGVTSSSCALLDEVLASGESLLRELDLASNKLGDV 248 (478)
T ss_pred hcccchhHHHHHhcccchhhhHHHhhhhhhhhcccccHHHHhhhhcCcChHHHHHHHHHHhccchhhHHHHHHhcCcchH
Confidence 66889999999999884 223333 3578999999999998854 13555565 77799999999964
Q ss_pred --ccchHhhhcC-CCCcEEEccCCCCCCCCChHHHHHHHHhhCccCceeecCCCCCCc
Q 035577 502 --KCLGQLAANY-NSLQAISLEGNPAQKNVGDEQLKKNLQSLLPHLVYFNWQPMKAST 556 (662)
Q Consensus 502 --~~l~~~l~~l-~~L~~L~Ls~N~l~~~~~~~~l~~~l~~~l~~L~~Ld~~~~~~~~ 556 (662)
..+...+..+ ..++.++++.|.|...- ...+.+ ....++.++.+.+..+.+..
T Consensus 249 g~~~L~~~l~~~~~~l~~l~l~~nsi~~~~-~~~L~~-~l~~~~~l~~l~l~~n~l~~ 304 (478)
T KOG4308|consen 249 GVEKLLPCLSVLSETLRVLDLSRNSITEKG-VRDLAE-VLVSCRQLEELSLSNNPLTD 304 (478)
T ss_pred HHHHHHHHhcccchhhhhhhhhcCCccccc-hHHHHH-HHhhhHHHHHhhcccCcccc
Confidence 3344455555 67899999999997632 222333 34445688888888887654
No 70
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=93.77 E-value=0.027 Score=35.82 Aligned_cols=21 Identities=33% Similarity=0.422 Sum_probs=14.6
Q ss_pred CCCEEeCcCCCCccccccccC
Q 035577 442 RLRVLDLSYNRILRIGHGLAS 462 (662)
Q Consensus 442 ~L~~LdLs~N~Ls~Lp~~l~~ 462 (662)
+|++|+|++|.|+.||.+|++
T Consensus 1 ~L~~Ldls~n~l~~ip~~~~~ 21 (22)
T PF00560_consen 1 NLEYLDLSGNNLTSIPSSFSN 21 (22)
T ss_dssp TESEEEETSSEESEEGTTTTT
T ss_pred CccEEECCCCcCEeCChhhcC
Confidence 467777777777777766554
No 71
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=91.77 E-value=0.0039 Score=63.15 Aligned_cols=87 Identities=18% Similarity=0.167 Sum_probs=59.0
Q ss_pred CCCCCCCCCEEeCcCCCCccccccccCCCCCcEEEcCCCCCCCcc-cccCCCCCcEEECCCCccCccccchHhhhcCCCC
Q 035577 436 GLRELTRLRVLDLSYNRILRIGHGLASCSSLKELYLAGNKISEVE-GLHRLLKLTVLDLRFNKISTAKCLGQLAANYNSL 514 (662)
Q Consensus 436 ~l~~L~~L~~LdLs~N~Ls~Lp~~l~~L~~L~~L~Ls~N~L~~l~-~l~~L~~L~~LdLs~N~Ls~l~~l~~~l~~l~~L 514 (662)
.+......+.||++.|++..+...|..++.|..|+++.|+|.-+| .+..+..++.+++..|..+.. |..+...+++
T Consensus 37 ei~~~kr~tvld~~s~r~vn~~~n~s~~t~~~rl~~sknq~~~~~~d~~q~~e~~~~~~~~n~~~~~---p~s~~k~~~~ 113 (326)
T KOG0473|consen 37 EIASFKRVTVLDLSSNRLVNLGKNFSILTRLVRLDLSKNQIKFLPKDAKQQRETVNAASHKNNHSQQ---PKSQKKEPHP 113 (326)
T ss_pred hhhccceeeeehhhhhHHHhhccchHHHHHHHHHhccHhhHhhChhhHHHHHHHHHHHhhccchhhC---CccccccCCc
Confidence 345556667777777777666666666677777777777776664 566666677777777776665 5556677777
Q ss_pred cEEEccCCCCC
Q 035577 515 QAISLEGNPAQ 525 (662)
Q Consensus 515 ~~L~Ls~N~l~ 525 (662)
+++++.+|+|.
T Consensus 114 k~~e~k~~~~~ 124 (326)
T KOG0473|consen 114 KKNEQKKTEFF 124 (326)
T ss_pred chhhhccCcch
Confidence 77777777764
No 72
>TIGR00864 PCC polycystin cation channel protein. Note: this model has been restricted to the amino half because for technical reasons.
Probab=90.43 E-value=0.31 Score=64.25 Aligned_cols=48 Identities=33% Similarity=0.401 Sum_probs=43.5
Q ss_pred ECCCCccCccccchHhhhcCCCCcEEEccCCCCCCCCChHHHHHHHHhhC
Q 035577 492 DLRFNKISTAKCLGQLAANYNSLQAISLEGNPAQKNVGDEQLKKNLQSLL 541 (662)
Q Consensus 492 dLs~N~Ls~l~~l~~~l~~l~~L~~L~Ls~N~l~~~~~~~~l~~~l~~~l 541 (662)
||++|+|+.++ ...|..+++|+.|+|++|||.|+|...++..|+...-
T Consensus 1 DLSnN~LstLp--~g~F~~L~sL~~LdLsgNPw~CDC~L~WL~~WL~~~~ 48 (2740)
T TIGR00864 1 DISNNKISTIE--EGICANLCNLSEIDLSGNPFECDCGLARLPRWAEEKG 48 (2740)
T ss_pred CCCCCcCCccC--hHHhccCCCceEEEeeCCccccccccHHHHHHHHhcC
Confidence 68999999997 6788899999999999999999999999999987763
No 73
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=89.29 E-value=0.0077 Score=61.10 Aligned_cols=79 Identities=20% Similarity=0.158 Sum_probs=48.2
Q ss_pred ccEEEccCCCCCCCc-CCCCCCCCCEEeCcCCCCccccccccCCCCCcEEEcCCCCCCCcc-cccCCCCCcEEECCCCcc
Q 035577 421 LHILNLSKNNISTIE-GLRELTRLRVLDLSYNRILRIGHGLASCSSLKELYLAGNKISEVE-GLHRLLKLTVLDLRFNKI 498 (662)
Q Consensus 421 L~~L~Ls~N~L~~lp-~l~~L~~L~~LdLs~N~Ls~Lp~~l~~L~~L~~L~Ls~N~L~~l~-~l~~L~~L~~LdLs~N~L 498 (662)
.+.||++.|++..+. .|.-++.|..|+++.|.|..+|..++.+..+..+++..|.++..| .+..++.++.+++.+|.+
T Consensus 44 ~tvld~~s~r~vn~~~n~s~~t~~~rl~~sknq~~~~~~d~~q~~e~~~~~~~~n~~~~~p~s~~k~~~~k~~e~k~~~~ 123 (326)
T KOG0473|consen 44 VTVLDLSSNRLVNLGKNFSILTRLVRLDLSKNQIKFLPKDAKQQRETVNAASHKNNHSQQPKSQKKEPHPKKNEQKKTEF 123 (326)
T ss_pred eeeehhhhhHHHhhccchHHHHHHHHHhccHhhHhhChhhHHHHHHHHHHHhhccchhhCCccccccCCcchhhhccCcc
Confidence 334444444433332 355556666667777776666766666666666677777666665 566667777777766654
Q ss_pred C
Q 035577 499 S 499 (662)
Q Consensus 499 s 499 (662)
.
T Consensus 124 ~ 124 (326)
T KOG0473|consen 124 F 124 (326)
T ss_pred h
Confidence 4
No 74
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=89.20 E-value=0.24 Score=29.56 Aligned_cols=15 Identities=53% Similarity=0.780 Sum_probs=5.2
Q ss_pred CCCEEeCcCCCCccc
Q 035577 442 RLRVLDLSYNRILRI 456 (662)
Q Consensus 442 ~L~~LdLs~N~Ls~L 456 (662)
+|+.|+|++|+|+.+
T Consensus 2 ~L~~L~l~~n~L~~l 16 (17)
T PF13504_consen 2 NLRTLDLSNNRLTSL 16 (17)
T ss_dssp T-SEEEETSS--SSE
T ss_pred ccCEEECCCCCCCCC
Confidence 344444444444433
No 75
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=88.39 E-value=0.31 Score=32.01 Aligned_cols=22 Identities=32% Similarity=0.578 Sum_probs=15.5
Q ss_pred CCCCCEEEccCCCCcccCCCcC
Q 035577 396 FVSLKVLNLSGNAIVRITAGAL 417 (662)
Q Consensus 396 L~~L~~L~Ls~N~L~~l~~~~~ 417 (662)
+++|++|+|++|.|+.+|.+.|
T Consensus 1 L~~L~~L~L~~N~l~~lp~~~f 22 (26)
T smart00370 1 LPNLRELDLSNNQLSSLPPGAF 22 (26)
T ss_pred CCCCCEEECCCCcCCcCCHHHc
Confidence 4567777777777777776654
No 76
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=88.39 E-value=0.31 Score=32.01 Aligned_cols=22 Identities=32% Similarity=0.578 Sum_probs=15.5
Q ss_pred CCCCCEEEccCCCCcccCCCcC
Q 035577 396 FVSLKVLNLSGNAIVRITAGAL 417 (662)
Q Consensus 396 L~~L~~L~Ls~N~L~~l~~~~~ 417 (662)
+++|++|+|++|.|+.+|.+.|
T Consensus 1 L~~L~~L~L~~N~l~~lp~~~f 22 (26)
T smart00369 1 LPNLRELDLSNNQLSSLPPGAF 22 (26)
T ss_pred CCCCCEEECCCCcCCcCCHHHc
Confidence 4567777777777777776654
No 77
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=87.55 E-value=0.39 Score=28.65 Aligned_cols=12 Identities=42% Similarity=0.708 Sum_probs=3.8
Q ss_pred CCEEEccCCCCc
Q 035577 399 LKVLNLSGNAIV 410 (662)
Q Consensus 399 L~~L~Ls~N~L~ 410 (662)
|+.|+|++|+|+
T Consensus 3 L~~L~l~~n~L~ 14 (17)
T PF13504_consen 3 LRTLDLSNNRLT 14 (17)
T ss_dssp -SEEEETSS--S
T ss_pred cCEEECCCCCCC
Confidence 444444444443
No 78
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=85.45 E-value=0.42 Score=30.28 Aligned_cols=17 Identities=41% Similarity=0.683 Sum_probs=9.3
Q ss_pred CCEEEccCCCCcccCCC
Q 035577 399 LKVLNLSGNAIVRITAG 415 (662)
Q Consensus 399 L~~L~Ls~N~L~~l~~~ 415 (662)
|++|+|++|+|+.+|..
T Consensus 2 L~~Ldls~n~l~~ip~~ 18 (22)
T PF00560_consen 2 LEYLDLSGNNLTSIPSS 18 (22)
T ss_dssp ESEEEETSSEESEEGTT
T ss_pred ccEEECCCCcCEeCChh
Confidence 55566666655555433
No 79
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=83.12 E-value=0.9 Score=29.74 Aligned_cols=20 Identities=45% Similarity=0.620 Sum_probs=13.5
Q ss_pred CCCCCEEeCcCCCCcccccc
Q 035577 440 LTRLRVLDLSYNRILRIGHG 459 (662)
Q Consensus 440 L~~L~~LdLs~N~Ls~Lp~~ 459 (662)
|++|++|+|++|.|+.+|..
T Consensus 1 L~~L~~L~L~~N~l~~lp~~ 20 (26)
T smart00370 1 LPNLRELDLSNNQLSSLPPG 20 (26)
T ss_pred CCCCCEEECCCCcCCcCCHH
Confidence 35677777777777777654
No 80
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=83.12 E-value=0.9 Score=29.74 Aligned_cols=20 Identities=45% Similarity=0.620 Sum_probs=13.5
Q ss_pred CCCCCEEeCcCCCCcccccc
Q 035577 440 LTRLRVLDLSYNRILRIGHG 459 (662)
Q Consensus 440 L~~L~~LdLs~N~Ls~Lp~~ 459 (662)
|++|++|+|++|.|+.+|..
T Consensus 1 L~~L~~L~L~~N~l~~lp~~ 20 (26)
T smart00369 1 LPNLRELDLSNNQLSSLPPG 20 (26)
T ss_pred CCCCCEEECCCCcCCcCCHH
Confidence 35677777777777777654
No 81
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=76.79 E-value=0.76 Score=50.59 Aligned_cols=15 Identities=40% Similarity=0.642 Sum_probs=8.2
Q ss_pred CCCCCCccccccCCC
Q 035577 182 MPYTPPLIIKSFSMP 196 (662)
Q Consensus 182 ~~~~~~~~~~~~~~~ 196 (662)
-+-+|-+.-|-+||.
T Consensus 73 ~~LPpEl~lkvFS~L 87 (483)
T KOG4341|consen 73 RSLPPELLLKVFSML 87 (483)
T ss_pred ccCCHHHHHHHHHHH
Confidence 333555566666663
No 82
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=76.32 E-value=0.24 Score=54.29 Aligned_cols=14 Identities=21% Similarity=0.520 Sum_probs=6.9
Q ss_pred CCCCcEEEccCCCC
Q 035577 511 YNSLQAISLEGNPA 524 (662)
Q Consensus 511 l~~L~~L~Ls~N~l 524 (662)
+..|..+.|++.|.
T Consensus 400 ~~~l~~lEL~n~p~ 413 (483)
T KOG4341|consen 400 LEGLEVLELDNCPL 413 (483)
T ss_pred ccccceeeecCCCC
Confidence 34455555555544
No 83
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=72.64 E-value=1.9 Score=48.99 Aligned_cols=59 Identities=32% Similarity=0.438 Sum_probs=39.6
Q ss_pred CCccEEEccCCCCCCCcCC----CCCCCCCEEeCcCC--CCcccccccc--CCCCCcEEEcCCCCCCC
Q 035577 419 RGLHILNLSKNNISTIEGL----RELTRLRVLDLSYN--RILRIGHGLA--SCSSLKELYLAGNKISE 478 (662)
Q Consensus 419 ~~L~~L~Ls~N~L~~lp~l----~~L~~L~~LdLs~N--~Ls~Lp~~l~--~L~~L~~L~Ls~N~L~~ 478 (662)
+.+..|.|++|+|..+..+ ...++|..|+|++| .+...+ .+. ....|++|.|.+|.|..
T Consensus 218 p~i~sl~lsnNrL~~Ld~~sslsq~apklk~L~LS~N~~~~~~~~-el~K~k~l~Leel~l~GNPlc~ 284 (585)
T KOG3763|consen 218 PEILSLSLSNNRLYHLDALSSLSQIAPKLKTLDLSHNHSKISSES-ELDKLKGLPLEELVLEGNPLCT 284 (585)
T ss_pred cceeeeecccchhhchhhhhHHHHhcchhheeecccchhhhcchh-hhhhhcCCCHHHeeecCCcccc
Confidence 5788888999988887643 34468888888888 444332 222 23457788888887753
No 84
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=70.62 E-value=5.6 Score=44.12 Aligned_cols=129 Identities=29% Similarity=0.222 Sum_probs=71.4
Q ss_pred CCCCCCCEEEccCC-CCcc--cCCC-cCCCCccEEEccCC--CCCCCc-----CCCCCCCCCEEeCcCCC-Ccccc--cc
Q 035577 394 SAFVSLKVLNLSGN-AIVR--ITAG-ALPRGLHILNLSKN--NISTIE-----GLRELTRLRVLDLSYNR-ILRIG--HG 459 (662)
Q Consensus 394 ~~L~~L~~L~Ls~N-~L~~--l~~~-~~~~~L~~L~Ls~N--~L~~lp-----~l~~L~~L~~LdLs~N~-Ls~Lp--~~ 459 (662)
..++.|+.|.+..+ .+.. +... ...+.|+.|+++++ .+...+ -...+.+|+.|+++++. ++..- .-
T Consensus 185 ~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l~~l 264 (482)
T KOG1947|consen 185 SSCPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGLSAL 264 (482)
T ss_pred hhCchhhHhhhcccccCChhhHHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchhHHHH
Confidence 34667777777765 3332 1111 11278888998873 222111 23445778888888876 54221 11
Q ss_pred ccCCCCCcEEEcCCCC-CCCc--c-cccCCCCCcEEECCCCccCccccchHhhhcCCCCcEEEccCC
Q 035577 460 LASCSSLKELYLAGNK-ISEV--E-GLHRLLKLTVLDLRFNKISTAKCLGQLAANYNSLQAISLEGN 522 (662)
Q Consensus 460 l~~L~~L~~L~Ls~N~-L~~l--~-~l~~L~~L~~LdLs~N~Ls~l~~l~~~l~~l~~L~~L~Ls~N 522 (662)
...+++|+.|.+.++. +++. . ....++.|+.|+|+++....-..+......+++|+.|.+..-
T Consensus 265 ~~~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~~~d~~l~~~~~~c~~l~~l~~~~~ 331 (482)
T KOG1947|consen 265 ASRCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHGLTDSGLEALLKNCPNLRELKLLSL 331 (482)
T ss_pred HhhCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCccchHHHHHHHHHhCcchhhhhhhhc
Confidence 2236788888876665 5543 2 345566788888887755432222333445666666554443
No 85
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=68.83 E-value=1.1 Score=44.95 Aligned_cols=32 Identities=25% Similarity=0.420 Sum_probs=15.4
Q ss_pred CccEEEccCCCCCC--CcCCCCCCCCCEEeCcCC
Q 035577 420 GLHILNLSKNNIST--IEGLRELTRLRVLDLSYN 451 (662)
Q Consensus 420 ~L~~L~Ls~N~L~~--lp~l~~L~~L~~LdLs~N 451 (662)
.++.++-++..|.. +..+..++.++.|.+.++
T Consensus 102 ~IeaVDAsds~I~~eGle~L~~l~~i~~l~l~~c 135 (221)
T KOG3864|consen 102 KIEAVDASDSSIMYEGLEHLRDLRSIKSLSLANC 135 (221)
T ss_pred eEEEEecCCchHHHHHHHHHhccchhhhheeccc
Confidence 44555555554442 234445555555544444
No 86
>smart00364 LRR_BAC Leucine-rich repeats, bacterial type.
Probab=66.20 E-value=4.1 Score=27.28 Aligned_cols=16 Identities=25% Similarity=0.443 Sum_probs=7.9
Q ss_pred CCCEEeCcCCCCcccc
Q 035577 442 RLRVLDLSYNRILRIG 457 (662)
Q Consensus 442 ~L~~LdLs~N~Ls~Lp 457 (662)
+|+.|++++|+|+.+|
T Consensus 3 ~L~~L~vs~N~Lt~LP 18 (26)
T smart00364 3 SLKELNVSNNQLTSLP 18 (26)
T ss_pred ccceeecCCCccccCc
Confidence 3444555555555444
No 87
>smart00364 LRR_BAC Leucine-rich repeats, bacterial type.
Probab=65.99 E-value=3.7 Score=27.45 Aligned_cols=18 Identities=39% Similarity=0.615 Sum_probs=12.2
Q ss_pred CCcEEEcCCCCCCCcccc
Q 035577 465 SLKELYLAGNKISEVEGL 482 (662)
Q Consensus 465 ~L~~L~Ls~N~L~~l~~l 482 (662)
+|+.|++++|+|+.+|.+
T Consensus 3 ~L~~L~vs~N~Lt~LPeL 20 (26)
T smart00364 3 SLKELNVSNNQLTSLPEL 20 (26)
T ss_pred ccceeecCCCccccCccc
Confidence 466777777777776654
No 88
>smart00365 LRR_SD22 Leucine-rich repeat, SDS22-like subfamily.
Probab=65.40 E-value=5.1 Score=26.75 Aligned_cols=12 Identities=58% Similarity=0.639 Sum_probs=4.9
Q ss_pred CcEEECCCCccC
Q 035577 488 LTVLDLRFNKIS 499 (662)
Q Consensus 488 L~~LdLs~N~Ls 499 (662)
|+.|+|++|+|+
T Consensus 4 L~~L~L~~NkI~ 15 (26)
T smart00365 4 LEELDLSQNKIK 15 (26)
T ss_pred cCEEECCCCccc
Confidence 344444444443
No 89
>smart00365 LRR_SD22 Leucine-rich repeat, SDS22-like subfamily.
Probab=63.40 E-value=5.9 Score=26.45 Aligned_cols=16 Identities=44% Similarity=0.584 Sum_probs=8.0
Q ss_pred CCCCEEEccCCCCccc
Q 035577 397 VSLKVLNLSGNAIVRI 412 (662)
Q Consensus 397 ~~L~~L~Ls~N~L~~l 412 (662)
++|+.|+|++|.|+.+
T Consensus 2 ~~L~~L~L~~NkI~~I 17 (26)
T smart00365 2 TNLEELDLSQNKIKKI 17 (26)
T ss_pred CccCEEECCCCcccee
Confidence 3455555555555444
No 90
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=62.57 E-value=3.6 Score=41.36 Aligned_cols=100 Identities=26% Similarity=0.268 Sum_probs=51.5
Q ss_pred CCCEEeCcCCCCcccc-ccccCCCCCcEEEcCCCC-CCCc--cccc-CCCCCcEEECCCC-ccCccccchHhhhcCCCCc
Q 035577 442 RLRVLDLSYNRILRIG-HGLASCSSLKELYLAGNK-ISEV--EGLH-RLLKLTVLDLRFN-KISTAKCLGQLAANYNSLQ 515 (662)
Q Consensus 442 ~L~~LdLs~N~Ls~Lp-~~l~~L~~L~~L~Ls~N~-L~~l--~~l~-~L~~L~~LdLs~N-~Ls~l~~l~~~l~~l~~L~ 515 (662)
.++.+|.++..|.... +.+.+++.|+.|.+.++. +.+. ..++ -.++|+.|+|++| +|++.. -..+..+++|+
T Consensus 102 ~IeaVDAsds~I~~eGle~L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~G--L~~L~~lknLr 179 (221)
T KOG3864|consen 102 KIEAVDASDSSIMYEGLEHLRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGG--LACLLKLKNLR 179 (221)
T ss_pred eEEEEecCCchHHHHHHHHHhccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhH--HHHHHHhhhhH
Confidence 4667777776666432 125556666666666553 2221 1121 2346777777755 455432 23445666677
Q ss_pred EEEccCCCCCCCCChHHHHHHHHhhCccCc
Q 035577 516 AISLEGNPAQKNVGDEQLKKNLQSLLPHLV 545 (662)
Q Consensus 516 ~L~Ls~N~l~~~~~~~~l~~~l~~~l~~L~ 545 (662)
.|.|.+=+.... .......+...+|++.
T Consensus 180 ~L~l~~l~~v~~--~e~~~~~Le~aLP~c~ 207 (221)
T KOG3864|consen 180 RLHLYDLPYVAN--LELVQRQLEEALPKCD 207 (221)
T ss_pred HHHhcCchhhhc--hHHHHHHHHHhCcccc
Confidence 666665444332 2223334555555554
No 91
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=59.66 E-value=6.9 Score=43.36 Aligned_cols=127 Identities=26% Similarity=0.252 Sum_probs=86.3
Q ss_pred CCccEEEccCC-CCCC--C-cCCCCCCCCCEEeCcCC--CCcccc----ccccCCCCCcEEEcCCCC-CCCc--cccc-C
Q 035577 419 RGLHILNLSKN-NIST--I-EGLRELTRLRVLDLSYN--RILRIG----HGLASCSSLKELYLAGNK-ISEV--EGLH-R 484 (662)
Q Consensus 419 ~~L~~L~Ls~N-~L~~--l-p~l~~L~~L~~LdLs~N--~Ls~Lp----~~l~~L~~L~~L~Ls~N~-L~~l--~~l~-~ 484 (662)
+.|+.|.+..+ .+.. + +....++.|+.|+++++ .+...+ .....+.+|+.|+++... +++. ..+. .
T Consensus 188 ~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l~~l~~~ 267 (482)
T KOG1947|consen 188 PLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGLSALASR 267 (482)
T ss_pred chhhHhhhcccccCChhhHHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchhHHHHHhh
Confidence 67888888876 4444 2 34677899999999973 222222 234566899999999988 6655 3333 3
Q ss_pred CCCCcEEECCCCc-cCccccchHhhhcCCCCcEEEccCCCCCCCCChHHHHHHHHhhCccCceeecC
Q 035577 485 LLKLTVLDLRFNK-ISTAKCLGQLAANYNSLQAISLEGNPAQKNVGDEQLKKNLQSLLPHLVYFNWQ 550 (662)
Q Consensus 485 L~~L~~LdLs~N~-Ls~l~~l~~~l~~l~~L~~L~Ls~N~l~~~~~~~~l~~~l~~~l~~L~~Ld~~ 550 (662)
+++|+.|.+.++. +++.. +......++.|++|+|+++... .+..+... ...+++++.|...
T Consensus 268 c~~L~~L~l~~c~~lt~~g-l~~i~~~~~~L~~L~l~~c~~~---~d~~l~~~-~~~c~~l~~l~~~ 329 (482)
T KOG1947|consen 268 CPNLETLSLSNCSNLTDEG-LVSIAERCPSLRELDLSGCHGL---TDSGLEAL-LKNCPNLRELKLL 329 (482)
T ss_pred CCCcceEccCCCCccchhH-HHHHHHhcCcccEEeeecCccc---hHHHHHHH-HHhCcchhhhhhh
Confidence 7899999988877 66543 4566677899999999987654 23444444 3447776665544
No 92
>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A ....
Probab=50.07 E-value=7.1 Score=24.91 Aligned_cols=15 Identities=40% Similarity=0.503 Sum_probs=7.3
Q ss_pred CCCcEEECCCCccCc
Q 035577 486 LKLTVLDLRFNKIST 500 (662)
Q Consensus 486 ~~L~~LdLs~N~Ls~ 500 (662)
++|+.|+|++|+|++
T Consensus 2 ~~L~~L~l~~n~i~~ 16 (24)
T PF13516_consen 2 PNLETLDLSNNQITD 16 (24)
T ss_dssp TT-SEEE-TSSBEHH
T ss_pred CCCCEEEccCCcCCH
Confidence 455566666665553
No 93
>smart00368 LRR_RI Leucine rich repeat, ribonuclease inhibitor type.
Probab=37.13 E-value=24 Score=23.59 Aligned_cols=15 Identities=40% Similarity=0.430 Sum_probs=9.1
Q ss_pred CCCcEEECCCCccCc
Q 035577 486 LKLTVLDLRFNKIST 500 (662)
Q Consensus 486 ~~L~~LdLs~N~Ls~ 500 (662)
++|+.|+|++|.|..
T Consensus 2 ~~L~~LdL~~N~i~~ 16 (28)
T smart00368 2 PSLRELDLSNNKLGD 16 (28)
T ss_pred CccCEEECCCCCCCH
Confidence 356666666666654
No 94
>PF05725 FNIP: FNIP Repeat; InterPro: IPR008615 This repeat is approximately 22 residues long and is only found in Dictyostelium discoideum (Slime mould). It appears to be related to IPR001611 from INTERPRO. The alignment consists of two tandem repeats. It is termed the FNIP repeat after the pattern of conserved residues.
Probab=27.86 E-value=81 Score=23.35 Aligned_cols=30 Identities=33% Similarity=0.447 Sum_probs=17.4
Q ss_pred CCCEEEccCCCCcccCCCcCCCCccEEEcc
Q 035577 398 SLKVLNLSGNAIVRITAGALPRGLHILNLS 427 (662)
Q Consensus 398 ~L~~L~Ls~N~L~~l~~~~~~~~L~~L~Ls 427 (662)
+|++|.+.++-=..+..+.+|.+|+.|.+.
T Consensus 13 ~l~~L~~g~~fn~~i~~~~lP~sl~~L~fg 42 (44)
T PF05725_consen 13 SLKSLIFGSSFNQPIEPGSLPNSLKSLSFG 42 (44)
T ss_pred CCeEEEECCccCccCCCCccCCCceEEEee
Confidence 566666644433444556666666666654
No 95
>smart00446 LRRcap occurring C-terminal to leucine-rich repeats. A motif occurring C-terminal to leucine-rich repeats in "sds22-like" and "typical" LRR-containing proteins.
Probab=27.13 E-value=46 Score=22.35 Aligned_cols=20 Identities=20% Similarity=0.424 Sum_probs=17.5
Q ss_pred HHHHHHHhhCccCceeecCC
Q 035577 532 QLKKNLQSLLPHLVYFNWQP 551 (662)
Q Consensus 532 ~l~~~l~~~l~~L~~Ld~~~ 551 (662)
.|+.+++..+|+|++||...
T Consensus 3 ~YR~~Vi~~LPqL~~LD~~~ 22 (26)
T smart00446 3 HYREKVIRLLPQLRKLDXXX 22 (26)
T ss_pred cHHHHHHHHCCccceecccc
Confidence 58899999999999999764
Done!