Query 035577
Match_columns 662
No_of_seqs 613 out of 3376
Neff 6.8
Searched_HMMs 29240
Date Mon Mar 25 06:28:08 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/035577.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/035577hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4fmz_A Internalin; leucine ric 99.9 2.1E-22 7.3E-27 213.0 25.4 227 282-525 71-300 (347)
2 3zyj_A Leucine-rich repeat-con 99.9 7.1E-22 2.4E-26 217.0 23.5 190 347-541 111-308 (440)
3 4fmz_A Internalin; leucine ric 99.9 2.2E-21 7.6E-26 205.2 25.1 259 272-555 85-346 (347)
4 3zyi_A Leucine-rich repeat-con 99.9 1.4E-21 4.8E-26 215.4 22.7 191 347-542 122-320 (452)
5 1o6v_A Internalin A; bacterial 99.9 9.1E-21 3.1E-25 209.7 24.4 168 377-557 179-346 (466)
6 1xku_A Decorin; proteoglycan, 99.9 1.6E-20 5.3E-25 198.0 23.3 255 282-552 57-329 (330)
7 3o6n_A APL1; leucine-rich repe 99.9 3.8E-21 1.3E-25 207.3 18.9 252 282-557 74-333 (390)
8 1o6v_A Internalin A; bacterial 99.9 1.6E-20 5.3E-25 207.8 24.0 256 274-557 111-368 (466)
9 2id5_A Lingo-1, leucine rich r 99.9 3.7E-21 1.3E-25 212.7 18.8 249 273-533 78-341 (477)
10 2z66_A Variable lymphocyte rec 99.9 1.8E-21 6.3E-26 202.7 15.4 246 282-539 12-275 (306)
11 1ozn_A Reticulon 4 receptor; N 99.9 2.2E-20 7.6E-25 192.7 22.9 228 282-540 16-253 (285)
12 3v47_A TOLL-like receptor 5B a 99.9 3.8E-20 1.3E-24 202.8 23.3 111 441-559 275-388 (455)
13 2id5_A Lingo-1, leucine rich r 99.8 1.3E-20 4.3E-25 208.4 19.5 265 273-555 54-333 (477)
14 2o6q_A Variable lymphocyte rec 99.8 1.2E-19 4.2E-24 186.2 25.1 162 377-540 63-234 (270)
15 1p9a_G Platelet glycoprotein I 99.8 2.5E-20 8.6E-25 194.3 20.2 187 348-540 31-223 (290)
16 3oja_B Anopheles plasmodium-re 99.8 1.5E-20 5E-25 214.8 19.4 257 274-554 74-357 (597)
17 3v47_A TOLL-like receptor 5B a 99.8 1.2E-19 4.2E-24 198.7 24.2 141 397-539 275-423 (455)
18 2ft3_A Biglycan; proteoglycan, 99.8 2.9E-20 9.8E-25 196.3 18.3 254 282-552 59-330 (332)
19 2z80_A TOLL-like receptor 2, v 99.8 3.6E-20 1.2E-24 197.2 16.5 187 347-538 99-328 (353)
20 1jl5_A Outer protein YOPM; leu 99.8 3.8E-20 1.3E-24 205.1 16.9 220 301-557 73-292 (454)
21 3vq2_A TLR4, TOLL-like recepto 99.8 6.1E-20 2.1E-24 208.7 19.0 263 273-555 283-558 (606)
22 2z66_A Variable lymphocyte rec 99.8 6.2E-20 2.1E-24 191.1 16.1 238 301-555 9-261 (306)
23 3t6q_A CD180 antigen; protein- 99.8 3.3E-19 1.1E-23 202.6 23.4 234 282-526 259-514 (606)
24 4ecn_A Leucine-rich repeat pro 99.8 1.5E-19 5.1E-24 214.9 21.3 262 273-551 489-785 (876)
25 2z63_A TOLL-like receptor 4, v 99.8 8.5E-20 2.9E-24 205.3 18.1 253 274-540 281-547 (570)
26 3bz5_A Internalin-J, INLJ; leu 99.8 3.4E-19 1.2E-23 197.6 22.5 253 282-557 69-333 (457)
27 3m19_A Variable lymphocyte rec 99.8 3E-19 1E-23 181.4 20.3 167 375-543 35-211 (251)
28 4ecn_A Leucine-rich repeat pro 99.8 1.7E-19 5.7E-24 214.6 21.1 255 282-557 553-842 (876)
29 1xku_A Decorin; proteoglycan, 99.8 3E-19 1E-23 188.1 20.8 240 272-523 73-330 (330)
30 3vq2_A TLR4, TOLL-like recepto 99.8 6E-20 2E-24 208.7 16.4 250 273-539 305-572 (606)
31 3rfs_A Internalin B, repeat mo 99.8 3.6E-19 1.2E-23 183.1 20.4 178 347-531 40-224 (272)
32 4eco_A Uncharacterized protein 99.8 4.3E-20 1.5E-24 212.7 15.0 52 442-493 489-543 (636)
33 4fcg_A Uncharacterized protein 99.8 1.4E-19 4.8E-24 191.8 17.5 222 298-557 80-316 (328)
34 4eco_A Uncharacterized protein 99.8 6.3E-20 2.2E-24 211.4 15.8 268 273-560 271-584 (636)
35 3t6q_A CD180 antigen; protein- 99.8 7.2E-19 2.5E-23 199.8 23.3 266 273-555 276-560 (606)
36 3g06_A SSPH2 (leucine-rich rep 99.8 1.2E-18 4E-23 200.4 25.3 239 275-557 61-299 (622)
37 3o6n_A APL1; leucine-rich repe 99.8 1.9E-19 6.5E-24 194.0 17.6 256 272-556 90-353 (390)
38 1jl5_A Outer protein YOPM; leu 99.8 2E-18 6.9E-23 191.2 25.8 247 276-559 92-354 (454)
39 2ft3_A Biglycan; proteoglycan, 99.8 1.3E-19 4.3E-24 191.3 15.3 257 282-555 38-307 (332)
40 3zyj_A Leucine-rich repeat-con 99.8 8.9E-19 3.1E-23 192.3 22.4 235 282-554 48-291 (440)
41 1h6u_A Internalin H; cell adhe 99.8 2.1E-19 7.1E-24 188.7 16.2 145 377-526 87-231 (308)
42 1ozn_A Reticulon 4 receptor; N 99.8 7.3E-19 2.5E-23 181.3 20.0 198 347-555 31-238 (285)
43 3g06_A SSPH2 (leucine-rich rep 99.8 9.7E-19 3.3E-23 201.1 23.1 220 274-527 80-299 (622)
44 2z62_A TOLL-like receptor 4, v 99.8 5.5E-19 1.9E-23 181.4 18.6 226 283-539 13-252 (276)
45 3zyi_A Leucine-rich repeat-con 99.8 7.6E-19 2.6E-23 193.5 19.9 234 301-554 56-302 (452)
46 2o6q_A Variable lymphocyte rec 99.8 1.7E-18 5.7E-23 177.8 20.9 173 374-554 36-217 (270)
47 1h6u_A Internalin H; cell adhe 99.8 5.7E-19 2E-23 185.3 17.7 198 347-562 40-237 (308)
48 3e6j_A Variable lymphocyte rec 99.8 9.9E-19 3.4E-23 175.7 18.6 172 377-551 21-199 (229)
49 1ziw_A TOLL-like receptor 3; i 99.8 1.7E-18 5.7E-23 199.7 23.1 265 274-554 328-621 (680)
50 2z7x_B TOLL-like receptor 1, v 99.8 5.4E-19 1.9E-23 197.3 18.3 158 377-538 326-495 (520)
51 3rgz_A Protein brassinosteroid 99.8 5.3E-19 1.8E-23 207.8 18.9 198 347-555 417-693 (768)
52 1ziw_A TOLL-like receptor 3; i 99.8 2.6E-18 9E-23 198.0 23.9 176 377-560 407-602 (680)
53 3oja_B Anopheles plasmodium-re 99.8 3.6E-19 1.2E-23 203.3 16.2 234 273-527 121-360 (597)
54 3rgz_A Protein brassinosteroid 99.8 5.1E-19 1.7E-23 208.0 17.9 241 298-555 393-717 (768)
55 1ogq_A PGIP-2, polygalacturona 99.8 7E-20 2.4E-24 192.6 9.1 194 347-553 100-302 (313)
56 3o53_A Protein LRIM1, AGAP0063 99.8 5.9E-20 2E-24 193.2 8.2 186 347-550 79-270 (317)
57 3o53_A Protein LRIM1, AGAP0063 99.8 5.1E-20 1.7E-24 193.7 7.7 231 275-522 34-272 (317)
58 2z7x_B TOLL-like receptor 1, v 99.8 2.2E-18 7.6E-23 192.3 21.4 173 376-560 248-462 (520)
59 2z81_A CD282 antigen, TOLL-lik 99.8 6.4E-19 2.2E-23 197.6 17.0 200 333-539 315-525 (549)
60 3oja_A Leucine-rich immune mol 99.8 1.5E-19 5E-24 202.0 10.9 205 282-526 39-251 (487)
61 3a79_B TLR6, VLRB.59, TOLL-lik 99.8 7.8E-18 2.7E-22 190.4 24.2 129 419-559 353-490 (562)
62 3a79_B TLR6, VLRB.59, TOLL-lik 99.8 1.8E-18 6.1E-23 195.6 18.8 130 421-561 333-469 (562)
63 1p9a_G Platelet glycoprotein I 99.8 3.6E-18 1.2E-22 177.9 19.5 194 347-555 9-208 (290)
64 2v9t_B SLIT homolog 2 protein 99.8 2E-18 6.9E-23 172.5 16.8 159 377-539 13-179 (220)
65 4g8a_A TOLL-like receptor 4; l 99.8 2.6E-18 8.8E-23 194.5 19.7 115 437-559 441-559 (635)
66 3bz5_A Internalin-J, INLJ; leu 99.8 9.6E-18 3.3E-22 185.9 23.8 248 272-554 39-298 (457)
67 4fcg_A Uncharacterized protein 99.8 2.9E-18 1E-22 181.6 17.1 218 275-526 81-315 (328)
68 3j0a_A TOLL-like receptor 5; m 99.8 6.8E-18 2.3E-22 200.4 21.9 265 272-559 45-398 (844)
69 1ogq_A PGIP-2, polygalacturona 99.8 1.8E-19 6.2E-24 189.4 7.0 233 282-526 55-305 (313)
70 3rfs_A Internalin B, repeat mo 99.8 7.5E-18 2.6E-22 173.2 18.4 171 377-555 43-218 (272)
71 2z62_A TOLL-like receptor 4, v 99.8 5.9E-18 2E-22 173.7 17.3 196 348-555 28-237 (276)
72 2z80_A TOLL-like receptor 2, v 99.8 2.5E-18 8.5E-23 183.0 14.3 238 282-554 36-313 (353)
73 3j0a_A TOLL-like receptor 5; m 99.8 2.2E-18 7.4E-23 204.6 15.2 160 376-540 402-575 (844)
74 2v70_A SLIT-2, SLIT homolog 2 99.8 8.5E-18 2.9E-22 168.0 16.8 160 377-539 13-180 (220)
75 2z81_A CD282 antigen, TOLL-lik 99.8 2.8E-18 9.6E-23 192.4 14.3 271 272-559 47-427 (549)
76 4g8a_A TOLL-like receptor 4; l 99.8 2.8E-18 9.6E-23 194.2 14.3 162 377-540 422-595 (635)
77 3m19_A Variable lymphocyte rec 99.8 2.1E-17 7.1E-22 167.7 19.2 171 376-556 15-193 (251)
78 3oja_A Leucine-rich immune mol 99.8 2.3E-18 7.9E-23 192.3 12.3 214 298-555 33-250 (487)
79 2xwt_C Thyrotropin receptor; s 99.7 6.8E-18 2.3E-22 169.7 14.1 191 348-552 31-236 (239)
80 1wwl_A Monocyte differentiatio 99.7 7.3E-19 2.5E-23 184.4 7.3 175 347-526 120-310 (312)
81 2z63_A TOLL-like receptor 4, v 99.7 3.4E-17 1.2E-21 184.0 20.5 148 376-526 283-435 (570)
82 1h6t_A Internalin B; cell adhe 99.7 1.2E-17 4.1E-22 173.9 14.9 145 377-526 70-214 (291)
83 1h6t_A Internalin B; cell adhe 99.7 2.6E-17 8.7E-22 171.4 16.6 171 377-560 48-218 (291)
84 1wwl_A Monocyte differentiatio 99.7 2.4E-18 8E-23 180.5 6.5 165 377-554 123-308 (312)
85 4ezg_A Putative uncharacterize 99.7 3.7E-17 1.3E-21 160.0 14.4 146 377-526 46-195 (197)
86 2o6s_A Variable lymphocyte rec 99.7 2E-16 6.7E-21 155.7 19.6 151 377-530 9-166 (208)
87 2xwt_C Thyrotropin receptor; s 99.7 1.2E-17 4.1E-22 167.9 10.9 178 373-560 29-223 (239)
88 2xot_A Amphoterin-induced prot 99.7 2.2E-17 7.5E-22 176.9 13.5 164 374-539 38-217 (361)
89 2ca6_A RAN GTPase-activating p 99.7 2.8E-18 9.6E-23 184.8 4.5 262 285-550 17-338 (386)
90 2ca6_A RAN GTPase-activating p 99.7 6E-18 2.1E-22 182.2 6.8 241 313-558 20-319 (386)
91 1xeu_A Internalin C; cellular 99.7 7.1E-17 2.4E-21 165.8 14.4 169 348-527 19-187 (263)
92 3cvr_A Invasion plasmid antige 99.7 1.8E-16 6.1E-21 180.5 18.4 140 375-528 100-246 (571)
93 1m9s_A Internalin B; cell inva 99.7 1.1E-16 3.7E-21 183.6 16.2 171 347-527 42-212 (605)
94 4glp_A Monocyte differentiatio 99.7 3.1E-17 1.1E-21 171.6 10.6 174 347-526 116-308 (310)
95 1xeu_A Internalin C; cellular 99.7 3.7E-17 1.3E-21 167.8 9.4 169 377-559 21-189 (263)
96 1m9s_A Internalin B; cell inva 99.7 1.6E-16 5.4E-21 182.3 15.4 161 335-501 50-212 (605)
97 2o6s_A Variable lymphocyte rec 99.7 2.8E-16 9.4E-21 154.6 13.2 147 375-530 28-183 (208)
98 2wfh_A SLIT homolog 2 protein 99.7 4.1E-16 1.4E-20 152.7 14.1 138 400-540 13-154 (193)
99 3cvr_A Invasion plasmid antige 99.7 9.9E-16 3.4E-20 174.3 19.3 179 349-557 60-245 (571)
100 1w8a_A SLIT protein; signaling 99.7 6.1E-16 2.1E-20 151.1 14.1 138 400-540 11-154 (192)
101 2xot_A Amphoterin-induced prot 99.6 1.5E-15 5.2E-20 162.6 16.0 169 377-554 20-201 (361)
102 1z7x_W Ribonuclease inhibitor; 99.6 5.6E-17 1.9E-21 177.7 3.5 274 275-555 56-383 (461)
103 1dce_A Protein (RAB geranylger 99.6 1.2E-17 4.1E-22 190.2 -2.8 127 419-549 441-567 (567)
104 4ezg_A Putative uncharacterize 99.6 1.2E-15 4.1E-20 149.1 11.0 149 347-501 43-196 (197)
105 3e6j_A Variable lymphocyte rec 99.6 5.1E-15 1.7E-19 148.5 15.7 126 375-500 40-173 (229)
106 4glp_A Monocyte differentiatio 99.6 2.2E-15 7.4E-20 157.6 13.5 171 377-558 93-288 (310)
107 3goz_A Leucine-rich repeat-con 99.6 3.6E-16 1.2E-20 167.3 6.9 207 349-556 52-298 (362)
108 1z7x_W Ribonuclease inhibitor; 99.6 2.6E-16 8.7E-21 172.4 4.8 275 276-557 86-413 (461)
109 2v9t_B SLIT homolog 2 protein 99.6 8.9E-15 3E-19 146.0 15.0 147 399-554 13-164 (220)
110 2v70_A SLIT-2, SLIT homolog 2 99.6 7.8E-15 2.7E-19 146.4 14.1 148 399-555 13-166 (220)
111 2o6r_A Variable lymphocyte rec 99.6 1.4E-14 4.9E-19 138.8 15.2 137 399-538 9-151 (177)
112 4ay9_X Follicle-stimulating ho 99.6 3.1E-14 1.1E-18 151.6 16.3 139 377-520 106-254 (350)
113 1a9n_A U2A', U2A'; complex (nu 99.6 3.2E-15 1.1E-19 143.5 7.0 132 393-524 15-152 (176)
114 2ell_A Acidic leucine-rich nuc 99.5 3.2E-14 1.1E-18 135.0 11.9 108 419-526 49-161 (168)
115 1a9n_A U2A', U2A'; complex (nu 99.5 1.3E-14 4.4E-19 139.3 7.5 138 418-560 18-158 (176)
116 3goz_A Leucine-rich repeat-con 99.5 8.2E-15 2.8E-19 156.7 6.8 206 347-554 21-265 (362)
117 2je0_A Acidic leucine-rich nuc 99.5 5.2E-14 1.8E-18 130.8 11.3 100 421-520 44-148 (149)
118 2ell_A Acidic leucine-rich nuc 99.5 3.4E-14 1.2E-18 134.8 9.9 131 372-502 21-163 (168)
119 1ds9_A Outer arm dynein; leuci 99.5 1.4E-16 4.9E-21 155.9 -7.0 140 419-559 48-191 (198)
120 4b8c_D Glucose-repressible alc 99.5 8.2E-15 2.8E-19 171.5 4.7 108 393-500 220-330 (727)
121 4ay9_X Follicle-stimulating ho 99.5 6.7E-14 2.3E-18 149.0 11.2 187 336-527 17-217 (350)
122 2ast_B S-phase kinase-associat 99.5 3E-14 1E-18 149.5 7.8 172 347-522 92-282 (336)
123 2wfh_A SLIT homolog 2 protein 99.5 3.8E-13 1.3E-17 131.6 14.0 122 377-500 12-140 (193)
124 2o6r_A Variable lymphocyte rec 99.5 7.3E-13 2.5E-17 126.8 15.5 124 377-501 9-139 (177)
125 1dce_A Protein (RAB geranylger 99.5 3E-15 1E-19 170.4 -1.8 121 398-519 442-567 (567)
126 1w8a_A SLIT protein; signaling 99.5 5.2E-13 1.8E-17 130.2 14.3 123 377-501 10-141 (192)
127 2je0_A Acidic leucine-rich nuc 99.5 1.3E-13 4.4E-18 128.1 9.4 122 374-495 16-149 (149)
128 3g39_A Variable lymphocyte rec 99.4 8.2E-13 2.8E-17 126.5 13.2 115 421-539 11-130 (170)
129 2r9u_A Variable lymphocyte rec 99.4 8.9E-13 3.1E-17 126.9 12.9 120 422-545 15-139 (174)
130 4b8c_D Glucose-repressible alc 99.4 1.3E-13 4.4E-18 161.4 7.6 150 377-530 175-334 (727)
131 2ast_B S-phase kinase-associat 99.4 2.2E-13 7.6E-18 142.8 8.2 170 377-553 72-258 (336)
132 3ogk_B Coronatine-insensitive 99.4 1.5E-13 5.1E-18 155.2 4.1 132 419-556 378-527 (592)
133 3g39_A Variable lymphocyte rec 99.3 1.2E-11 4.1E-16 118.3 11.8 101 399-500 11-116 (170)
134 1ds9_A Outer arm dynein; leuci 99.3 3.7E-14 1.3E-18 138.7 -6.2 129 393-526 44-186 (198)
135 2ifg_A High affinity nerve gro 99.3 1.7E-11 5.7E-16 129.6 12.8 117 423-542 12-133 (347)
136 2r9u_A Variable lymphocyte rec 99.3 2.7E-11 9.3E-16 116.5 12.5 101 400-501 15-120 (174)
137 3sb4_A Hypothetical leucine ri 99.2 1.6E-11 5.3E-16 129.4 9.0 38 396-434 100-139 (329)
138 3ogk_B Coronatine-insensitive 99.2 9.9E-12 3.4E-16 140.3 7.6 269 274-555 191-501 (592)
139 3sb4_A Hypothetical leucine ri 99.2 8.4E-11 2.9E-15 123.8 11.1 99 440-548 225-327 (329)
140 3un9_A NLR family member X1; l 99.2 4.5E-12 1.5E-16 136.8 1.0 154 373-526 70-253 (372)
141 2p1m_B Transport inhibitor res 99.1 4.8E-12 1.6E-16 142.7 -0.7 199 346-554 287-518 (594)
142 2p1m_B Transport inhibitor res 99.0 8.4E-11 2.9E-15 132.5 4.7 87 463-555 371-469 (594)
143 2ifg_A High affinity nerve gro 99.0 6.5E-10 2.2E-14 117.4 10.1 100 379-499 12-116 (347)
144 3un9_A NLR family member X1; l 99.0 7E-11 2.4E-15 127.4 1.7 177 347-525 71-283 (372)
145 4fdw_A Leucine rich hypothetic 98.9 1.6E-08 5.4E-13 110.1 16.8 143 376-526 204-359 (401)
146 4fdw_A Leucine rich hypothetic 98.9 1.9E-08 6.4E-13 109.5 16.9 223 282-524 140-382 (401)
147 3rw6_A Nuclear RNA export fact 98.7 1.3E-08 4.5E-13 104.9 5.0 107 446-554 148-263 (267)
148 1io0_A Tropomodulin; LRR prote 98.4 1.5E-07 5E-12 91.2 4.6 89 437-525 61-164 (185)
149 2ra8_A Uncharacterized protein 98.4 2.5E-07 8.5E-12 99.4 5.9 132 393-525 168-320 (362)
150 2ra8_A Uncharacterized protein 98.4 4.3E-07 1.5E-11 97.5 7.2 152 366-523 164-341 (362)
151 1io0_A Tropomodulin; LRR prote 98.3 7.3E-07 2.5E-11 86.3 7.1 118 437-556 32-165 (185)
152 3rw6_A Nuclear RNA export fact 98.0 4.4E-06 1.5E-10 85.9 6.5 80 439-518 168-257 (267)
153 4gt6_A Cell surface protein; l 98.0 0.00017 5.9E-09 77.4 18.0 81 437-522 284-367 (394)
154 3rfe_A Platelet glycoprotein I 97.8 4E-05 1.4E-09 70.0 8.5 70 468-540 12-83 (130)
155 4fs7_A Uncharacterized protein 97.8 0.00027 9.2E-09 75.8 15.6 123 393-522 249-376 (394)
156 4fs7_A Uncharacterized protein 97.7 0.00084 2.9E-08 71.9 17.6 221 275-517 162-393 (394)
157 4gt6_A Cell surface protein; l 97.7 0.00072 2.5E-08 72.4 16.2 123 393-524 261-390 (394)
158 1pgv_A TMD-1, tropomodulin TMD 97.4 0.00023 7.7E-09 69.8 7.8 104 419-522 41-167 (197)
159 3e4g_A ATP synthase subunit S, 97.4 0.0002 6.8E-09 69.0 6.3 100 442-545 62-170 (176)
160 1pgv_A TMD-1, tropomodulin TMD 97.3 0.00015 5E-09 71.2 5.0 118 437-555 37-170 (197)
161 3e4g_A ATP synthase subunit S, 97.2 0.00017 5.7E-09 69.5 3.9 98 419-516 61-171 (176)
162 4h09_A Hypothetical leucine ri 97.1 0.0026 8.9E-08 67.4 11.9 124 393-522 213-343 (379)
163 4h09_A Hypothetical leucine ri 97.1 0.0021 7.2E-08 68.1 11.0 128 377-511 219-355 (379)
164 3rfe_A Platelet glycoprotein I 96.5 0.0038 1.3E-07 56.8 6.3 34 443-476 33-67 (130)
No 1
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.90 E-value=2.1e-22 Score=213.02 Aligned_cols=227 Identities=22% Similarity=0.272 Sum_probs=104.1
Q ss_pred cccCCCCCccCCCCCCCCCCceeecCCccCCCcchhhhcCCCCCCCCcccCCCCCCCCccCCc--ccCCCCCceeeCCcc
Q 035577 282 VMPDENSVKKLQGESLHEQWDKLPSKHFKIKRIKEWVNDLQHCSPLEESDETSVSNDQVKRDP--KVLNGSTAVKVDGKV 359 (662)
Q Consensus 282 L~ls~N~I~~L~~~s~l~~L~~L~l~~~si~~L~~~~~~L~~l~~L~~L~~l~ls~n~L~~~p--~~l~~L~~L~l~~~~ 359 (662)
++++.|.+..++.+..+++|+.|++.+|.++.++. +..+..|+.|+ ++.+.+...+ ..+.+|+.|++.++.
T Consensus 71 L~l~~n~i~~~~~~~~l~~L~~L~L~~n~i~~~~~----~~~l~~L~~L~---l~~n~i~~~~~~~~l~~L~~L~l~~n~ 143 (347)
T 4fmz_A 71 LNLNGNQITDISPLSNLVKLTNLYIGTNKITDISA----LQNLTNLRELY---LNEDNISDISPLANLTKMYSLNLGANH 143 (347)
T ss_dssp EECCSSCCCCCGGGTTCTTCCEEECCSSCCCCCGG----GTTCTTCSEEE---CTTSCCCCCGGGTTCTTCCEEECTTCT
T ss_pred EEccCCccccchhhhcCCcCCEEEccCCcccCchH----HcCCCcCCEEE---CcCCcccCchhhccCCceeEEECCCCC
Confidence 55555555555555555555555555555554432 23333333322 2223332222 124445555554431
Q ss_pred -ccchhhhHHHhhhccCCccEEEccCCCCCCCCCCCCCCCCCEEEccCCCCcccCCCcCCCCccEEEccCCCCCCCcCCC
Q 035577 360 -TAGMEAVTKYISSLSASATTVQLSNHGLVVIPFLSAFVSLKVLNLSGNAIVRITAGALPRGLHILNLSKNNISTIEGLR 438 (662)
Q Consensus 360 -~~~l~~l~~~l~~l~~sL~~L~Ls~N~L~~lp~l~~L~~L~~L~Ls~N~L~~l~~~~~~~~L~~L~Ls~N~L~~lp~l~ 438 (662)
...+. .+..++. |+.|++++|.+..++.+..+++|++|++++|.+..++.....++|+.|++++|.++.++.+.
T Consensus 144 ~~~~~~----~~~~l~~-L~~L~l~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~~n~l~~~~~~~ 218 (347)
T 4fmz_A 144 NLSDLS----PLSNMTG-LNYLTVTESKVKDVTPIANLTDLYSLSLNYNQIEDISPLASLTSLHYFTAYVNQITDITPVA 218 (347)
T ss_dssp TCCCCG----GGTTCTT-CCEEECCSSCCCCCGGGGGCTTCSEEECTTSCCCCCGGGGGCTTCCEEECCSSCCCCCGGGG
T ss_pred Cccccc----chhhCCC-CcEEEecCCCcCCchhhccCCCCCEEEccCCcccccccccCCCccceeecccCCCCCCchhh
Confidence 11111 1222222 55555555555544444555555555555555544443222244555555555555444444
Q ss_pred CCCCCCEEeCcCCCCccccccccCCCCCcEEEcCCCCCCCcccccCCCCCcEEECCCCccCccccchHhhhcCCCCcEEE
Q 035577 439 ELTRLRVLDLSYNRILRIGHGLASCSSLKELYLAGNKISEVEGLHRLLKLTVLDLRFNKISTAKCLGQLAANYNSLQAIS 518 (662)
Q Consensus 439 ~L~~L~~LdLs~N~Ls~Lp~~l~~L~~L~~L~Ls~N~L~~l~~l~~L~~L~~LdLs~N~Ls~l~~l~~~l~~l~~L~~L~ 518 (662)
.+++|++|++++|.++.++. +..+++|++|++++|.++.++.+..+++|+.|++++|.|++++ .+..+++|+.|+
T Consensus 219 ~~~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~~n~l~~~~----~~~~l~~L~~L~ 293 (347)
T 4fmz_A 219 NMTRLNSLKIGNNKITDLSP-LANLSQLTWLEIGTNQISDINAVKDLTKLKMLNVGSNQISDIS----VLNNLSQLNSLF 293 (347)
T ss_dssp GCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCCCG----GGGGCTTCSEEE
T ss_pred cCCcCCEEEccCCccCCCcc-hhcCCCCCEEECCCCccCCChhHhcCCCcCEEEccCCccCCCh----hhcCCCCCCEEE
Confidence 44555555555555544443 4444555555555555544444444455555555555444431 123444555555
Q ss_pred ccCCCCC
Q 035577 519 LEGNPAQ 525 (662)
Q Consensus 519 Ls~N~l~ 525 (662)
|++|++.
T Consensus 294 L~~n~l~ 300 (347)
T 4fmz_A 294 LNNNQLG 300 (347)
T ss_dssp CCSSCCC
T ss_pred CcCCcCC
Confidence 5555443
No 2
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.89 E-value=7.1e-22 Score=217.01 Aligned_cols=190 Identities=24% Similarity=0.298 Sum_probs=160.0
Q ss_pred CCCCCceeeCCccccchhhhHHHhhhccCCccEEEccCCCCCCCCC--CCCCCCCCEEEccC-CCCcccCCCcCC--CCc
Q 035577 347 LNGSTAVKVDGKVTAGMEAVTKYISSLSASATTVQLSNHGLVVIPF--LSAFVSLKVLNLSG-NAIVRITAGALP--RGL 421 (662)
Q Consensus 347 l~~L~~L~l~~~~~~~l~~l~~~l~~l~~sL~~L~Ls~N~L~~lp~--l~~L~~L~~L~Ls~-N~L~~l~~~~~~--~~L 421 (662)
+.+|+.|++.++.+..+.. ..+..++ .|+.|+|++|.|+.++. |..+++|++|+|++ |.+..++...|. ++|
T Consensus 111 l~~L~~L~L~~n~l~~~~~--~~~~~l~-~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L 187 (440)
T 3zyj_A 111 LANLNTLELFDNRLTTIPN--GAFVYLS-KLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNL 187 (440)
T ss_dssp CSSCCEEECCSSCCSSCCT--TTSCSCS-SCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSC
T ss_pred CccCCEEECCCCcCCeeCH--hHhhccc-cCceeeCCCCcccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhccccc
Confidence 3455555555544332221 1233344 39999999999998875 89999999999998 677888877766 899
Q ss_pred cEEEccCCCCCCCcCCCCCCCCCEEeCcCCCCccc-cccccCCCCCcEEEcCCCCCCCcc--cccCCCCCcEEECCCCcc
Q 035577 422 HILNLSKNNISTIEGLRELTRLRVLDLSYNRILRI-GHGLASCSSLKELYLAGNKISEVE--GLHRLLKLTVLDLRFNKI 498 (662)
Q Consensus 422 ~~L~Ls~N~L~~lp~l~~L~~L~~LdLs~N~Ls~L-p~~l~~L~~L~~L~Ls~N~L~~l~--~l~~L~~L~~LdLs~N~L 498 (662)
++|+|++|.|+.+|.+..+++|+.|+|++|.|+.+ |..|..+++|+.|+|++|+|+.++ .|..+++|+.|+|++|+|
T Consensus 188 ~~L~L~~n~l~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l 267 (440)
T 3zyj_A 188 RYLNLAMCNLREIPNLTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNL 267 (440)
T ss_dssp CEEECTTSCCSSCCCCTTCSSCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTSSTTCTTCCEEECTTSCC
T ss_pred CeecCCCCcCccccccCCCcccCEEECCCCccCccChhhhccCccCCEEECCCCceeEEChhhhcCCCCCCEEECCCCCC
Confidence 99999999999999999999999999999999987 556999999999999999999883 688999999999999999
Q ss_pred CccccchHhhhcCCCCcEEEccCCCCCCCCChHHHHHHHHhhC
Q 035577 499 STAKCLGQLAANYNSLQAISLEGNPAQKNVGDEQLKKNLQSLL 541 (662)
Q Consensus 499 s~l~~l~~~l~~l~~L~~L~Ls~N~l~~~~~~~~l~~~l~~~l 541 (662)
+.++ +..+..+++|+.|+|++|+|.|+|...++..|+....
T Consensus 268 ~~~~--~~~~~~l~~L~~L~L~~Np~~CdC~l~~l~~~~~~~~ 308 (440)
T 3zyj_A 268 TLLP--HDLFTPLHHLERIHLHHNPWNCNCDILWLSWWIKDMA 308 (440)
T ss_dssp CCCC--TTTTSSCTTCCEEECCSSCEECSSTTHHHHHHHHTTS
T ss_pred CccC--hhHhccccCCCEEEcCCCCccCCCCchHHHHHHHhcc
Confidence 9886 6677889999999999999999999998888887653
No 3
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.88 E-value=2.2e-21 Score=205.23 Aligned_cols=259 Identities=19% Similarity=0.209 Sum_probs=206.1
Q ss_pred cCcccCcccccccCCCCCccCCCCCCCCCCceeecCCccCCCcchhhhcCCCCCCCCcccCCCCCCCCc-cCC--cccCC
Q 035577 272 CNYSALAKDWVMPDENSVKKLQGESLHEQWDKLPSKHFKIKRIKEWVNDLQHCSPLEESDETSVSNDQV-KRD--PKVLN 348 (662)
Q Consensus 272 ~~l~~L~~~~L~ls~N~I~~L~~~s~l~~L~~L~l~~~si~~L~~~~~~L~~l~~L~~L~~l~ls~n~L-~~~--p~~l~ 348 (662)
..+..|.. ++++.|.+..++.+..+++|+.|++.+|.+..++. +..+..|+.|+. +.+.. ... ...+.
T Consensus 85 ~~l~~L~~--L~L~~n~i~~~~~~~~l~~L~~L~l~~n~i~~~~~----~~~l~~L~~L~l---~~n~~~~~~~~~~~l~ 155 (347)
T 4fmz_A 85 SNLVKLTN--LYIGTNKITDISALQNLTNLRELYLNEDNISDISP----LANLTKMYSLNL---GANHNLSDLSPLSNMT 155 (347)
T ss_dssp TTCTTCCE--EECCSSCCCCCGGGTTCTTCSEEECTTSCCCCCGG----GTTCTTCCEEEC---TTCTTCCCCGGGTTCT
T ss_pred hcCCcCCE--EEccCCcccCchHHcCCCcCCEEECcCCcccCchh----hccCCceeEEEC---CCCCCcccccchhhCC
Confidence 34566666 88899999999888899999999999999888764 445555555443 33322 111 23467
Q ss_pred CCCceeeCCccccchhhhHHHhhhccCCccEEEccCCCCCCCCCCCCCCCCCEEEccCCCCcccCCCcCCCCccEEEccC
Q 035577 349 GSTAVKVDGKVTAGMEAVTKYISSLSASATTVQLSNHGLVVIPFLSAFVSLKVLNLSGNAIVRITAGALPRGLHILNLSK 428 (662)
Q Consensus 349 ~L~~L~l~~~~~~~l~~l~~~l~~l~~sL~~L~Ls~N~L~~lp~l~~L~~L~~L~Ls~N~L~~l~~~~~~~~L~~L~Ls~ 428 (662)
+|+.|++.++....+.. +..++. |+.|++++|.+..++.+..+++|++|++++|.++.++.....++|++|+|++
T Consensus 156 ~L~~L~l~~~~~~~~~~----~~~l~~-L~~L~l~~n~l~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~L~~L~l~~ 230 (347)
T 4fmz_A 156 GLNYLTVTESKVKDVTP----IANLTD-LYSLSLNYNQIEDISPLASLTSLHYFTAYVNQITDITPVANMTRLNSLKIGN 230 (347)
T ss_dssp TCCEEECCSSCCCCCGG----GGGCTT-CSEEECTTSCCCCCGGGGGCTTCCEEECCSSCCCCCGGGGGCTTCCEEECCS
T ss_pred CCcEEEecCCCcCCchh----hccCCC-CCEEEccCCcccccccccCCCccceeecccCCCCCCchhhcCCcCCEEEccC
Confidence 78888888876655543 444554 9999999999998888889999999999999998877533338999999999
Q ss_pred CCCCCCcCCCCCCCCCEEeCcCCCCccccccccCCCCCcEEEcCCCCCCCcccccCCCCCcEEECCCCccCccccchHhh
Q 035577 429 NNISTIEGLRELTRLRVLDLSYNRILRIGHGLASCSSLKELYLAGNKISEVEGLHRLLKLTVLDLRFNKISTAKCLGQLA 508 (662)
Q Consensus 429 N~L~~lp~l~~L~~L~~LdLs~N~Ls~Lp~~l~~L~~L~~L~Ls~N~L~~l~~l~~L~~L~~LdLs~N~Ls~l~~l~~~l 508 (662)
|.++.++.+..+++|++|++++|.++.++ .+..+++|+.|++++|.|++++.+..+++|+.|++++|.++... +..+
T Consensus 231 n~l~~~~~~~~l~~L~~L~l~~n~l~~~~-~~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~L~~n~l~~~~--~~~l 307 (347)
T 4fmz_A 231 NKITDLSPLANLSQLTWLEIGTNQISDIN-AVKDLTKLKMLNVGSNQISDISVLNNLSQLNSLFLNNNQLGNED--MEVI 307 (347)
T ss_dssp SCCCCCGGGTTCTTCCEEECCSSCCCCCG-GGTTCTTCCEEECCSSCCCCCGGGGGCTTCSEEECCSSCCCGGG--HHHH
T ss_pred CccCCCcchhcCCCCCEEECCCCccCCCh-hHhcCCCcCEEEccCCccCCChhhcCCCCCCEEECcCCcCCCcC--hhHh
Confidence 99999888889999999999999999885 68889999999999999999988899999999999999998774 6778
Q ss_pred hcCCCCcEEEccCCCCCCCCChHHHHHHHHhhCccCceeecCCCCCC
Q 035577 509 ANYNSLQAISLEGNPAQKNVGDEQLKKNLQSLLPHLVYFNWQPMKAS 555 (662)
Q Consensus 509 ~~l~~L~~L~Ls~N~l~~~~~~~~l~~~l~~~l~~L~~Ld~~~~~~~ 555 (662)
..+++|+.|+|++|++++..+ ...+++|++|++.++.++
T Consensus 308 ~~l~~L~~L~L~~n~l~~~~~--------~~~l~~L~~L~l~~N~i~ 346 (347)
T 4fmz_A 308 GGLTNLTTLFLSQNHITDIRP--------LASLSKMDSADFANQVIK 346 (347)
T ss_dssp HTCTTCSEEECCSSSCCCCGG--------GGGCTTCSEESSSCC---
T ss_pred hccccCCEEEccCCccccccC--------hhhhhccceeehhhhccc
Confidence 889999999999999987544 456889999999888764
No 4
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.88 E-value=1.4e-21 Score=215.41 Aligned_cols=191 Identities=25% Similarity=0.291 Sum_probs=160.4
Q ss_pred CCCCCceeeCCccccchhhhHHHhhhccCCccEEEccCCCCCCCCC--CCCCCCCCEEEccC-CCCcccCCCcCC--CCc
Q 035577 347 LNGSTAVKVDGKVTAGMEAVTKYISSLSASATTVQLSNHGLVVIPF--LSAFVSLKVLNLSG-NAIVRITAGALP--RGL 421 (662)
Q Consensus 347 l~~L~~L~l~~~~~~~l~~l~~~l~~l~~sL~~L~Ls~N~L~~lp~--l~~L~~L~~L~Ls~-N~L~~l~~~~~~--~~L 421 (662)
+.+|+.|++.++.+..+.. ..+..++ .|+.|+|++|.|+.+|. |..+++|++|+|++ |.+..++...|. ++|
T Consensus 122 l~~L~~L~L~~n~l~~~~~--~~~~~l~-~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L 198 (452)
T 3zyi_A 122 LASLNTLELFDNWLTVIPS--GAFEYLS-KLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNL 198 (452)
T ss_dssp CTTCCEEECCSSCCSBCCT--TTSSSCT-TCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTC
T ss_pred cccCCEEECCCCcCCccCh--hhhcccC-CCCEEECCCCCcceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCC
Confidence 4555666666544333221 1223344 39999999999998885 89999999999998 678888877666 899
Q ss_pred cEEEccCCCCCCCcCCCCCCCCCEEeCcCCCCccc-cccccCCCCCcEEEcCCCCCCCcc--cccCCCCCcEEECCCCcc
Q 035577 422 HILNLSKNNISTIEGLRELTRLRVLDLSYNRILRI-GHGLASCSSLKELYLAGNKISEVE--GLHRLLKLTVLDLRFNKI 498 (662)
Q Consensus 422 ~~L~Ls~N~L~~lp~l~~L~~L~~LdLs~N~Ls~L-p~~l~~L~~L~~L~Ls~N~L~~l~--~l~~L~~L~~LdLs~N~L 498 (662)
++|+|++|+|+.+|.+..+++|+.|+|++|.|+.+ |..|..+++|+.|+|++|+|+.++ .+..+++|+.|+|++|+|
T Consensus 199 ~~L~L~~n~l~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l 278 (452)
T 3zyi_A 199 KYLNLGMCNIKDMPNLTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNL 278 (452)
T ss_dssp CEEECTTSCCSSCCCCTTCTTCCEEECTTSCCSEECGGGGTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCC
T ss_pred CEEECCCCcccccccccccccccEEECcCCcCcccCcccccCccCCCEEEeCCCcCceECHHHhcCCCCCCEEECCCCcC
Confidence 99999999999999999999999999999999977 556999999999999999999883 688999999999999999
Q ss_pred CccccchHhhhcCCCCcEEEccCCCCCCCCChHHHHHHHHhhCc
Q 035577 499 STAKCLGQLAANYNSLQAISLEGNPAQKNVGDEQLKKNLQSLLP 542 (662)
Q Consensus 499 s~l~~l~~~l~~l~~L~~L~Ls~N~l~~~~~~~~l~~~l~~~l~ 542 (662)
+.++ +..+..+++|+.|+|++|+|.|+|...++..|+....+
T Consensus 279 ~~~~--~~~~~~l~~L~~L~L~~Np~~CdC~~~~l~~~l~~~~~ 320 (452)
T 3zyi_A 279 SSLP--HDLFTPLRYLVELHLHHNPWNCDCDILWLAWWLREYIP 320 (452)
T ss_dssp SCCC--TTSSTTCTTCCEEECCSSCEECSTTTHHHHHHHHHHC-
T ss_pred CccC--hHHhccccCCCEEEccCCCcCCCCCchHHHHHHHHhCc
Confidence 9885 56678899999999999999999999988888876544
No 5
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.87 E-value=9.1e-21 Score=209.71 Aligned_cols=168 Identities=28% Similarity=0.310 Sum_probs=113.6
Q ss_pred ccEEEccCCCCCCCCCCCCCCCCCEEEccCCCCcccCCCcCCCCccEEEccCCCCCCCcCCCCCCCCCEEeCcCCCCccc
Q 035577 377 ATTVQLSNHGLVVIPFLSAFVSLKVLNLSGNAIVRITAGALPRGLHILNLSKNNISTIEGLRELTRLRVLDLSYNRILRI 456 (662)
Q Consensus 377 L~~L~Ls~N~L~~lp~l~~L~~L~~L~Ls~N~L~~l~~~~~~~~L~~L~Ls~N~L~~lp~l~~L~~L~~LdLs~N~Ls~L 456 (662)
|+.|++++|.++.++.+..+++|++|++++|.+..+++....++|++|+|++|.++.++.+..+++|++|++++|.++.+
T Consensus 179 L~~L~l~~n~l~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~l~~n~l~~~ 258 (466)
T 1o6v_A 179 LERLDISSNKVSDISVLAKLTNLESLIATNNQISDITPLGILTNLDELSLNGNQLKDIGTLASLTNLTDLDLANNQISNL 258 (466)
T ss_dssp CCEEECCSSCCCCCGGGGGCTTCSEEECCSSCCCCCGGGGGCTTCCEEECCSSCCCCCGGGGGCTTCSEEECCSSCCCCC
T ss_pred CCEEECcCCcCCCChhhccCCCCCEEEecCCcccccccccccCCCCEEECCCCCcccchhhhcCCCCCEEECCCCccccc
Confidence 77777777777777667777777777777777766654333467777777777777776666777777777777777766
Q ss_pred cccccCCCCCcEEEcCCCCCCCcccccCCCCCcEEECCCCccCccccchHhhhcCCCCcEEEccCCCCCCCCChHHHHHH
Q 035577 457 GHGLASCSSLKELYLAGNKISEVEGLHRLLKLTVLDLRFNKISTAKCLGQLAANYNSLQAISLEGNPAQKNVGDEQLKKN 536 (662)
Q Consensus 457 p~~l~~L~~L~~L~Ls~N~L~~l~~l~~L~~L~~LdLs~N~Ls~l~~l~~~l~~l~~L~~L~Ls~N~l~~~~~~~~l~~~ 536 (662)
+. +..+++|+.|++++|.++.++.+..+++|+.|+|++|.++++.. +..+++|+.|+|++|.+.+..+
T Consensus 259 ~~-~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~L~~n~l~~~~~----~~~l~~L~~L~L~~n~l~~~~~------- 326 (466)
T 1o6v_A 259 AP-LSGLTKLTELKLGANQISNISPLAGLTALTNLELNENQLEDISP----ISNLKNLTYLTLYFNNISDISP------- 326 (466)
T ss_dssp GG-GTTCTTCSEEECCSSCCCCCGGGTTCTTCSEEECCSSCCSCCGG----GGGCTTCSEEECCSSCCSCCGG-------
T ss_pred hh-hhcCCCCCEEECCCCccCccccccCCCccCeEEcCCCcccCchh----hcCCCCCCEEECcCCcCCCchh-------
Confidence 54 66677777777777777766656666777777777777766532 4566677777777776665432
Q ss_pred HHhhCccCceeecCCCCCCcc
Q 035577 537 LQSLLPHLVYFNWQPMKASTL 557 (662)
Q Consensus 537 l~~~l~~L~~Ld~~~~~~~~l 557 (662)
...+++|+.|++..+.+...
T Consensus 327 -~~~l~~L~~L~l~~n~l~~~ 346 (466)
T 1o6v_A 327 -VSSLTKLQRLFFYNNKVSDV 346 (466)
T ss_dssp -GGGCTTCCEEECCSSCCCCC
T ss_pred -hccCccCCEeECCCCccCCc
Confidence 24556666666666655544
No 6
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.86 E-value=1.6e-20 Score=197.97 Aligned_cols=255 Identities=22% Similarity=0.241 Sum_probs=180.6
Q ss_pred cccCCCCCccCCC--CCCCCCCceeecCCccCCCcchhhhcCCCCCCCCcccCCCCCCCCccCCccc-CCCCCceeeCCc
Q 035577 282 VMPDENSVKKLQG--ESLHEQWDKLPSKHFKIKRIKEWVNDLQHCSPLEESDETSVSNDQVKRDPKV-LNGSTAVKVDGK 358 (662)
Q Consensus 282 L~ls~N~I~~L~~--~s~l~~L~~L~l~~~si~~L~~~~~~L~~l~~L~~L~~l~ls~n~L~~~p~~-l~~L~~L~l~~~ 358 (662)
++++.|.++.++. +..+.+|+.|++.+|.+..+.. ..+..+..|+. ++++.+.+..+|.. ..+|+.|++.++
T Consensus 57 L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~--~~~~~l~~L~~---L~Ls~n~l~~l~~~~~~~L~~L~l~~n 131 (330)
T 1xku_A 57 LDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISP--GAFAPLVKLER---LYLSKNQLKELPEKMPKTLQELRVHEN 131 (330)
T ss_dssp EECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCT--TTTTTCTTCCE---EECCSSCCSBCCSSCCTTCCEEECCSS
T ss_pred EECCCCcCCEeChhhhccCCCCCEEECCCCcCCeeCH--HHhcCCCCCCE---EECCCCcCCccChhhcccccEEECCCC
Confidence 7888888888876 7778889999999988887631 12344444444 44556666655533 467888888876
Q ss_pred cccchhhhHHHhhhccCCccEEEccCCCCCC---CCC-CCCCCCCCEEEccCCCCcccCCCcCCCCccEEEccCCCCCCC
Q 035577 359 VTAGMEAVTKYISSLSASATTVQLSNHGLVV---IPF-LSAFVSLKVLNLSGNAIVRITAGALPRGLHILNLSKNNISTI 434 (662)
Q Consensus 359 ~~~~l~~l~~~l~~l~~sL~~L~Ls~N~L~~---lp~-l~~L~~L~~L~Ls~N~L~~l~~~~~~~~L~~L~Ls~N~L~~l 434 (662)
....+.. ..+..++. |+.|+|++|.+.. .+. +..+++|++|++++|.++.++...+ ++|++|+|++|.|+.+
T Consensus 132 ~l~~~~~--~~~~~l~~-L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~l~~~~~-~~L~~L~l~~n~l~~~ 207 (330)
T 1xku_A 132 EITKVRK--SVFNGLNQ-MIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITTIPQGLP-PSLTELHLDGNKITKV 207 (330)
T ss_dssp CCCBBCH--HHHTTCTT-CCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCCSCCSSCC-TTCSEEECTTSCCCEE
T ss_pred cccccCH--hHhcCCcc-ccEEECCCCcCCccCcChhhccCCCCcCEEECCCCccccCCcccc-ccCCEEECCCCcCCcc
Confidence 6554322 23444554 8888888888863 233 7888888888888888888775544 6888888888888876
Q ss_pred c--CCCCCCCCCEEeCcCCCCccccc-cccCCCCCcEEEcCCCCCCCcc-cccCCCCCcEEECCCCccCccccchHhhh-
Q 035577 435 E--GLRELTRLRVLDLSYNRILRIGH-GLASCSSLKELYLAGNKISEVE-GLHRLLKLTVLDLRFNKISTAKCLGQLAA- 509 (662)
Q Consensus 435 p--~l~~L~~L~~LdLs~N~Ls~Lp~-~l~~L~~L~~L~Ls~N~L~~l~-~l~~L~~L~~LdLs~N~Ls~l~~l~~~l~- 509 (662)
+ .+..+++|++|+|++|.|+.++. .+..+++|++|+|++|.|+.+| .+..+++|+.|+|++|+|+.++ +..+.
T Consensus 208 ~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~lp~~l~~l~~L~~L~l~~N~i~~~~--~~~f~~ 285 (330)
T 1xku_A 208 DAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLVKVPGGLADHKYIQVVYLHNNNISAIG--SNDFCP 285 (330)
T ss_dssp CTGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSCCSSCCTTTTTCSSCCEEECCSSCCCCCC--TTSSSC
T ss_pred CHHHhcCCCCCCEEECCCCcCceeChhhccCCCCCCEEECCCCcCccCChhhccCCCcCEEECCCCcCCccC--hhhcCC
Confidence 3 57888888888888888887765 5888888888888888888885 5778888888888888888874 22332
Q ss_pred -----cCCCCcEEEccCCCCCCC-CChHHHHHHHHhhCccCceeecCCC
Q 035577 510 -----NYNSLQAISLEGNPAQKN-VGDEQLKKNLQSLLPHLVYFNWQPM 552 (662)
Q Consensus 510 -----~l~~L~~L~Ls~N~l~~~-~~~~~l~~~l~~~l~~L~~Ld~~~~ 552 (662)
....|+.|++.+|++... ++. .....+..++.+++.++
T Consensus 286 ~~~~~~~~~l~~l~l~~N~~~~~~i~~-----~~f~~~~~l~~l~L~~N 329 (330)
T 1xku_A 286 PGYNTKKASYSGVSLFSNPVQYWEIQP-----STFRCVYVRAAVQLGNY 329 (330)
T ss_dssp SSCCTTSCCCSEEECCSSSSCGGGSCG-----GGGTTCCCGGGEEC---
T ss_pred cccccccccccceEeecCcccccccCc-----cccccccceeEEEeccc
Confidence 236788888888888642 121 12344667777776654
No 7
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.86 E-value=3.8e-21 Score=207.31 Aligned_cols=252 Identities=17% Similarity=0.207 Sum_probs=122.5
Q ss_pred cccCCCCCccCCC--CCCCCCCceeecCCccCCCcchhhhcCCCCCCCCcccCCCCCCCCccCCcc----cCCCCCceee
Q 035577 282 VMPDENSVKKLQG--ESLHEQWDKLPSKHFKIKRIKEWVNDLQHCSPLEESDETSVSNDQVKRDPK----VLNGSTAVKV 355 (662)
Q Consensus 282 L~ls~N~I~~L~~--~s~l~~L~~L~l~~~si~~L~~~~~~L~~l~~L~~L~~l~ls~n~L~~~p~----~l~~L~~L~l 355 (662)
++++.|.+..++. +..+.+|+.|++.+|.+..++. ..+..+..|+. ++++.+.+..++. .+.+|+.|++
T Consensus 74 L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~--~~~~~l~~L~~---L~L~~n~l~~l~~~~~~~l~~L~~L~L 148 (390)
T 3o6n_A 74 LNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPP--HVFQNVPLLTV---LVLERNDLSSLPRGIFHNTPKLTTLSM 148 (390)
T ss_dssp EECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCT--TTTTTCTTCCE---EECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred EECCCCcccccChhhccCCCCcCEEECCCCCCCcCCH--HHhcCCCCCCE---EECCCCccCcCCHHHhcCCCCCcEEEC
Confidence 5556666655543 4555666666666665555432 11222333333 3333344433332 2445555555
Q ss_pred CCccccchhhhHHHhhhccCCccEEEccCCCCCCCCCCCCCCCCCEEEccCCCCcccCCCcCCCCccEEEccCCCCCCCc
Q 035577 356 DGKVTAGMEAVTKYISSLSASATTVQLSNHGLVVIPFLSAFVSLKVLNLSGNAIVRITAGALPRGLHILNLSKNNISTIE 435 (662)
Q Consensus 356 ~~~~~~~l~~l~~~l~~l~~sL~~L~Ls~N~L~~lp~l~~L~~L~~L~Ls~N~L~~l~~~~~~~~L~~L~Ls~N~L~~lp 435 (662)
.++....+.. ..+..++. |+.|+|++|.++.++ +..+++|+.|++++|.++.++ .+..|++|++++|.++.++
T Consensus 149 ~~n~l~~~~~--~~~~~l~~-L~~L~l~~n~l~~~~-~~~l~~L~~L~l~~n~l~~~~---~~~~L~~L~l~~n~l~~~~ 221 (390)
T 3o6n_A 149 SNNNLERIED--DTFQATTS-LQNLQLSSNRLTHVD-LSLIPSLFHANVSYNLLSTLA---IPIAVEELDASHNSINVVR 221 (390)
T ss_dssp CSSCCCBCCT--TTTSSCTT-CCEEECCSSCCSBCC-GGGCTTCSEEECCSSCCSEEE---CCSSCSEEECCSSCCCEEE
T ss_pred CCCccCccCh--hhccCCCC-CCEEECCCCcCCccc-cccccccceeecccccccccC---CCCcceEEECCCCeeeecc
Confidence 5544332211 12223332 566666666665543 233344444444444433221 1134445555555544443
Q ss_pred CCCCCCCCCEEeCcCCCCccccccccCCCCCcEEEcCCCCCCCc--ccccCCCCCcEEECCCCccCccccchHhhhcCCC
Q 035577 436 GLRELTRLRVLDLSYNRILRIGHGLASCSSLKELYLAGNKISEV--EGLHRLLKLTVLDLRFNKISTAKCLGQLAANYNS 513 (662)
Q Consensus 436 ~l~~L~~L~~LdLs~N~Ls~Lp~~l~~L~~L~~L~Ls~N~L~~l--~~l~~L~~L~~LdLs~N~Ls~l~~l~~~l~~l~~ 513 (662)
. ...++|+.|++++|.++.++ .+..+++|++|+|++|.|+++ ..+..+++|+.|+|++|+|+.++ ..+..+++
T Consensus 222 ~-~~~~~L~~L~l~~n~l~~~~-~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~---~~~~~l~~ 296 (390)
T 3o6n_A 222 G-PVNVELTILKLQHNNLTDTA-WLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVALN---LYGQPIPT 296 (390)
T ss_dssp C-CCCSSCCEEECCSSCCCCCG-GGGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECCSSCCCEEE---CSSSCCTT
T ss_pred c-cccccccEEECCCCCCcccH-HHcCCCCccEEECCCCcCCCcChhHccccccCCEEECCCCcCcccC---cccCCCCC
Confidence 2 12345666666666665543 455566666666666666554 24555666666666666665542 22345566
Q ss_pred CcEEEccCCCCCCCCChHHHHHHHHhhCccCceeecCCCCCCcc
Q 035577 514 LQAISLEGNPAQKNVGDEQLKKNLQSLLPHLVYFNWQPMKASTL 557 (662)
Q Consensus 514 L~~L~Ls~N~l~~~~~~~~l~~~l~~~l~~L~~Ld~~~~~~~~l 557 (662)
|+.|+|++|++....+. ...+++|++|++..+.+..+
T Consensus 297 L~~L~L~~n~l~~~~~~-------~~~l~~L~~L~L~~N~i~~~ 333 (390)
T 3o6n_A 297 LKVLDLSHNHLLHVERN-------QPQFDRLENLYLDHNSIVTL 333 (390)
T ss_dssp CCEEECCSSCCCCCGGG-------HHHHTTCSEEECCSSCCCCC
T ss_pred CCEEECCCCcceecCcc-------ccccCcCCEEECCCCcccee
Confidence 66666666665532111 12345566666666555444
No 8
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.86 E-value=1.6e-20 Score=207.83 Aligned_cols=256 Identities=22% Similarity=0.265 Sum_probs=141.1
Q ss_pred cccCcccccccCCCCCccCCCCCCCCCCceeecCCccCCCcchhhhcCCCCCCCCcccCCCCCCCCccCC--cccCCCCC
Q 035577 274 YSALAKDWVMPDENSVKKLQGESLHEQWDKLPSKHFKIKRIKEWVNDLQHCSPLEESDETSVSNDQVKRD--PKVLNGST 351 (662)
Q Consensus 274 l~~L~~~~L~ls~N~I~~L~~~s~l~~L~~L~l~~~si~~L~~~~~~L~~l~~L~~L~~l~ls~n~L~~~--p~~l~~L~ 351 (662)
+..|.. ++++.|.+..++.+..+++|+.|++.+|.+..++. +..+..|+.|... +.+... ...+..|+
T Consensus 111 l~~L~~--L~L~~n~l~~~~~~~~l~~L~~L~l~~n~l~~~~~----~~~l~~L~~L~l~----~~~~~~~~~~~l~~L~ 180 (466)
T 1o6v_A 111 LTNLTG--LTLFNNQITDIDPLKNLTNLNRLELSSNTISDISA----LSGLTSLQQLSFG----NQVTDLKPLANLTTLE 180 (466)
T ss_dssp CTTCCE--EECCSSCCCCCGGGTTCTTCSEEEEEEEEECCCGG----GTTCTTCSEEEEE----ESCCCCGGGTTCTTCC
T ss_pred CCCCCE--EECCCCCCCCChHHcCCCCCCEEECCCCccCCChh----hccCCcccEeecC----CcccCchhhccCCCCC
Confidence 344554 66666766666666666777777777766666543 3333444433321 111111 12245556
Q ss_pred ceeeCCccccchhhhHHHhhhccCCccEEEccCCCCCCCCCCCCCCCCCEEEccCCCCcccCCCcCCCCccEEEccCCCC
Q 035577 352 AVKVDGKVTAGMEAVTKYISSLSASATTVQLSNHGLVVIPFLSAFVSLKVLNLSGNAIVRITAGALPRGLHILNLSKNNI 431 (662)
Q Consensus 352 ~L~l~~~~~~~l~~l~~~l~~l~~sL~~L~Ls~N~L~~lp~l~~L~~L~~L~Ls~N~L~~l~~~~~~~~L~~L~Ls~N~L 431 (662)
.|++.++....+.. +..++. |+.|++++|.++.++.+..+++|++|+|++|.++.++.....++|++|+|++|.+
T Consensus 181 ~L~l~~n~l~~~~~----l~~l~~-L~~L~l~~n~l~~~~~~~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~l~~n~l 255 (466)
T 1o6v_A 181 RLDISSNKVSDISV----LAKLTN-LESLIATNNQISDITPLGILTNLDELSLNGNQLKDIGTLASLTNLTDLDLANNQI 255 (466)
T ss_dssp EEECCSSCCCCCGG----GGGCTT-CSEEECCSSCCCCCGGGGGCTTCCEEECCSSCCCCCGGGGGCTTCSEEECCSSCC
T ss_pred EEECcCCcCCCChh----hccCCC-CCEEEecCCcccccccccccCCCCEEECCCCCcccchhhhcCCCCCEEECCCCcc
Confidence 66666554444321 233333 6666666666665554555666666666666665553222225666666666666
Q ss_pred CCCcCCCCCCCCCEEeCcCCCCccccccccCCCCCcEEEcCCCCCCCcccccCCCCCcEEECCCCccCccccchHhhhcC
Q 035577 432 STIEGLRELTRLRVLDLSYNRILRIGHGLASCSSLKELYLAGNKISEVEGLHRLLKLTVLDLRFNKISTAKCLGQLAANY 511 (662)
Q Consensus 432 ~~lp~l~~L~~L~~LdLs~N~Ls~Lp~~l~~L~~L~~L~Ls~N~L~~l~~l~~L~~L~~LdLs~N~Ls~l~~l~~~l~~l 511 (662)
+.++.+..+++|+.|++++|.++.++. +..+++|+.|+|++|++++++.+..+++|+.|+|++|.++++. + +..+
T Consensus 256 ~~~~~~~~l~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~L~~n~l~~~~~~~~l~~L~~L~L~~n~l~~~~--~--~~~l 330 (466)
T 1o6v_A 256 SNLAPLSGLTKLTELKLGANQISNISP-LAGLTALTNLELNENQLEDISPISNLKNLTYLTLYFNNISDIS--P--VSSL 330 (466)
T ss_dssp CCCGGGTTCTTCSEEECCSSCCCCCGG-GTTCTTCSEEECCSSCCSCCGGGGGCTTCSEEECCSSCCSCCG--G--GGGC
T ss_pred ccchhhhcCCCCCEEECCCCccCcccc-ccCCCccCeEEcCCCcccCchhhcCCCCCCEEECcCCcCCCch--h--hccC
Confidence 665555666666666666666665554 5566666666666666666655566666666666666666553 1 3455
Q ss_pred CCCcEEEccCCCCCCCCChHHHHHHHHhhCccCceeecCCCCCCcc
Q 035577 512 NSLQAISLEGNPAQKNVGDEQLKKNLQSLLPHLVYFNWQPMKASTL 557 (662)
Q Consensus 512 ~~L~~L~Ls~N~l~~~~~~~~l~~~l~~~l~~L~~Ld~~~~~~~~l 557 (662)
++|+.|++++|++.+. + ....+++|++|++..+.+...
T Consensus 331 ~~L~~L~l~~n~l~~~-~-------~l~~l~~L~~L~l~~n~l~~~ 368 (466)
T 1o6v_A 331 TKLQRLFFYNNKVSDV-S-------SLANLTNINWLSAGHNQISDL 368 (466)
T ss_dssp TTCCEEECCSSCCCCC-G-------GGTTCTTCCEEECCSSCCCBC
T ss_pred ccCCEeECCCCccCCc-h-------hhccCCCCCEEeCCCCccCcc
Confidence 6666666666666543 1 123455666666665555443
No 9
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.86 E-value=3.7e-21 Score=212.72 Aligned_cols=249 Identities=22% Similarity=0.242 Sum_probs=182.6
Q ss_pred CcccCcccccccCCCCCccCCC--CCCCCCCceeecCCccCCCcchhhhcCCCCCCCCcccCCCCCCCCccCC----ccc
Q 035577 273 NYSALAKDWVMPDENSVKKLQG--ESLHEQWDKLPSKHFKIKRIKEWVNDLQHCSPLEESDETSVSNDQVKRD----PKV 346 (662)
Q Consensus 273 ~l~~L~~~~L~ls~N~I~~L~~--~s~l~~L~~L~l~~~si~~L~~~~~~L~~l~~L~~L~~l~ls~n~L~~~----p~~ 346 (662)
.+..|.. |+++.|.++.++. +..+.+|+.|++.+|.+..+.. ..+..+..|+.|. ++.+.+... ...
T Consensus 78 ~l~~L~~--L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~--~~~~~l~~L~~L~---l~~n~l~~~~~~~~~~ 150 (477)
T 2id5_A 78 NLFNLRT--LGLRSNRLKLIPLGVFTGLSNLTKLDISENKIVILLD--YMFQDLYNLKSLE---VGDNDLVYISHRAFSG 150 (477)
T ss_dssp TCTTCCE--EECCSSCCCSCCTTSSTTCTTCCEEECTTSCCCEECT--TTTTTCTTCCEEE---ECCTTCCEECTTSSTT
T ss_pred CCccCCE--EECCCCcCCccCcccccCCCCCCEEECCCCccccCCh--hHccccccCCEEE---CCCCccceeChhhccC
Confidence 3455555 7777777777765 5667778888887777766532 1234444444433 344444322 223
Q ss_pred CCCCCceeeCCccccchhhhHHHhhhccCCccEEEccCCCCCCCCC--CCCCCCCCEEEccCCCC-cccCCCcCC-CCcc
Q 035577 347 LNGSTAVKVDGKVTAGMEAVTKYISSLSASATTVQLSNHGLVVIPF--LSAFVSLKVLNLSGNAI-VRITAGALP-RGLH 422 (662)
Q Consensus 347 l~~L~~L~l~~~~~~~l~~l~~~l~~l~~sL~~L~Ls~N~L~~lp~--l~~L~~L~~L~Ls~N~L-~~l~~~~~~-~~L~ 422 (662)
+.+|+.|++.++....+.. ..+..++. |+.|+|++|.+..++. |..+++|++|+|++|.+ ..++...+. .+|+
T Consensus 151 l~~L~~L~l~~n~l~~~~~--~~l~~l~~-L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~ 227 (477)
T 2id5_A 151 LNSLEQLTLEKCNLTSIPT--EALSHLHG-LIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLT 227 (477)
T ss_dssp CTTCCEEEEESCCCSSCCH--HHHTTCTT-CCEEEEESCCCCEECTTCSCSCTTCCEEEEECCTTCCEECTTTTTTCCCS
T ss_pred CCCCCEEECCCCcCcccCh--hHhcccCC-CcEEeCCCCcCcEeChhhcccCcccceeeCCCCccccccCcccccCcccc
Confidence 5677777777765544321 23444443 8888888888886654 78888888888888654 344444443 5899
Q ss_pred EEEccCCCCCCCc--CCCCCCCCCEEeCcCCCCcccccc-ccCCCCCcEEEcCCCCCCCcc--cccCCCCCcEEECCCCc
Q 035577 423 ILNLSKNNISTIE--GLRELTRLRVLDLSYNRILRIGHG-LASCSSLKELYLAGNKISEVE--GLHRLLKLTVLDLRFNK 497 (662)
Q Consensus 423 ~L~Ls~N~L~~lp--~l~~L~~L~~LdLs~N~Ls~Lp~~-l~~L~~L~~L~Ls~N~L~~l~--~l~~L~~L~~LdLs~N~ 497 (662)
+|+|++|.|+.++ .+..+++|+.|+|++|.|+.++.. |..+++|+.|+|++|+|+.+. .+..+++|+.|+|++|.
T Consensus 228 ~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~ 307 (477)
T 2id5_A 228 SLSITHCNLTAVPYLAVRHLVYLRFLNLSYNPISTIEGSMLHELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQ 307 (477)
T ss_dssp EEEEESSCCCSCCHHHHTTCTTCCEEECCSSCCCEECTTSCTTCTTCCEEECCSSCCSEECTTTBTTCTTCCEEECCSSC
T ss_pred EEECcCCcccccCHHHhcCccccCeeECCCCcCCccChhhccccccCCEEECCCCccceECHHHhcCcccCCEEECCCCc
Confidence 9999999999887 588999999999999999988754 889999999999999999873 78899999999999999
Q ss_pred cCccccchHhhhcCCCCcEEEccCCCCCCCCChHHH
Q 035577 498 ISTAKCLGQLAANYNSLQAISLEGNPAQKNVGDEQL 533 (662)
Q Consensus 498 Ls~l~~l~~~l~~l~~L~~L~Ls~N~l~~~~~~~~l 533 (662)
|+.++ +..+..+++|+.|+|++|+|.|.|...++
T Consensus 308 l~~~~--~~~~~~l~~L~~L~l~~N~l~c~c~~~~~ 341 (477)
T 2id5_A 308 LTTLE--ESVFHSVGNLETLILDSNPLACDCRLLWV 341 (477)
T ss_dssp CSCCC--GGGBSCGGGCCEEECCSSCEECSGGGHHH
T ss_pred CceeC--HhHcCCCcccCEEEccCCCccCccchHhH
Confidence 99885 56678889999999999999998886544
No 10
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.86 E-value=1.8e-21 Score=202.70 Aligned_cols=246 Identities=17% Similarity=0.201 Sum_probs=189.0
Q ss_pred cccCCCCCccCCCCCCCCCCceeecCCccCCCcchhhhcCCCCCCCCcccCCCCCCCCccCC---c---ccCCCCCceee
Q 035577 282 VMPDENSVKKLQGESLHEQWDKLPSKHFKIKRIKEWVNDLQHCSPLEESDETSVSNDQVKRD---P---KVLNGSTAVKV 355 (662)
Q Consensus 282 L~ls~N~I~~L~~~s~l~~L~~L~l~~~si~~L~~~~~~L~~l~~L~~L~~l~ls~n~L~~~---p---~~l~~L~~L~l 355 (662)
++.+.+.++.++. ....+++.|++.++.++.++.. .+..+..|+. ++++.+.+... + ..+.+|+.|++
T Consensus 12 l~c~~~~l~~ip~-~~~~~l~~L~L~~n~l~~i~~~--~~~~l~~L~~---L~L~~n~l~~~~~~~~~~~~~~~L~~L~L 85 (306)
T 2z66_A 12 IRCNSKGLTSVPT-GIPSSATRLELESNKLQSLPHG--VFDKLTQLTK---LSLSSNGLSFKGCCSQSDFGTTSLKYLDL 85 (306)
T ss_dssp EECCSSCCSSCCS-CCCTTCCEEECCSSCCCCCCTT--TTTTCTTCSE---EECCSSCCCEEEEEEHHHHSCSCCCEEEC
T ss_pred EEcCCCCcccCCC-CCCCCCCEEECCCCccCccCHh--HhhccccCCE---EECCCCccCcccCcccccccccccCEEEC
Confidence 5566666666665 2235677778877777766532 1233344443 33444444322 1 12577888888
Q ss_pred CCccccchhhhHHHhhhccCCccEEEccCCCCCCCCC---CCCCCCCCEEEccCCCCcccCCCcCC--CCccEEEccCCC
Q 035577 356 DGKVTAGMEAVTKYISSLSASATTVQLSNHGLVVIPF---LSAFVSLKVLNLSGNAIVRITAGALP--RGLHILNLSKNN 430 (662)
Q Consensus 356 ~~~~~~~l~~l~~~l~~l~~sL~~L~Ls~N~L~~lp~---l~~L~~L~~L~Ls~N~L~~l~~~~~~--~~L~~L~Ls~N~ 430 (662)
.++....+ +..+..++. |+.|+|++|.++.++. +..+++|++|+|++|.+..+....+. ++|++|+|++|.
T Consensus 86 s~n~i~~l---~~~~~~l~~-L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~ 161 (306)
T 2z66_A 86 SFNGVITM---SSNFLGLEQ-LEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNS 161 (306)
T ss_dssp CSCSEEEE---EEEEETCTT-CCEEECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEEECTTCE
T ss_pred CCCccccC---hhhcCCCCC-CCEEECCCCcccccccchhhhhccCCCEEECCCCcCCccchhhcccCcCCCEEECCCCc
Confidence 87655433 233445554 9999999999997763 88999999999999999888777665 899999999999
Q ss_pred CCC--Cc-CCCCCCCCCEEeCcCCCCccc-cccccCCCCCcEEEcCCCCCCCcc--cccCCCCCcEEECCCCccCccccc
Q 035577 431 IST--IE-GLRELTRLRVLDLSYNRILRI-GHGLASCSSLKELYLAGNKISEVE--GLHRLLKLTVLDLRFNKISTAKCL 504 (662)
Q Consensus 431 L~~--lp-~l~~L~~L~~LdLs~N~Ls~L-p~~l~~L~~L~~L~Ls~N~L~~l~--~l~~L~~L~~LdLs~N~Ls~l~~l 504 (662)
++. ++ .+..+++|++|+|++|.|+.+ |..|..+++|+.|+|++|.|+.++ .+..+++|+.|+|++|.|++..
T Consensus 162 l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~-- 239 (306)
T 2z66_A 162 FQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSK-- 239 (306)
T ss_dssp EGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCSBCCSGGGTTCTTCCEEECTTSCCCBCS--
T ss_pred cccccchhHHhhCcCCCEEECCCCCcCCcCHHHhcCCCCCCEEECCCCccCccChhhccCcccCCEeECCCCCCcccC--
Confidence 986 44 689999999999999999987 556999999999999999999884 5788999999999999999874
Q ss_pred hHhhhcCC-CCcEEEccCCCCCCCCChHHHHHHHHh
Q 035577 505 GQLAANYN-SLQAISLEGNPAQKNVGDEQLKKNLQS 539 (662)
Q Consensus 505 ~~~l~~l~-~L~~L~Ls~N~l~~~~~~~~l~~~l~~ 539 (662)
+..+..++ +|+.|+|++|++.|.|+..++..|+..
T Consensus 240 ~~~~~~~~~~L~~L~L~~N~~~~~c~~~~~~~~l~~ 275 (306)
T 2z66_A 240 KQELQHFPSSLAFLNLTQNDFACTCEHQSFLQWIKD 275 (306)
T ss_dssp SSSCCCCCTTCCEEECTTCCEECSGGGHHHHHHHHH
T ss_pred HHHHHhhhccCCEEEccCCCeecccChHHHHHHHHh
Confidence 55567774 999999999999999998888888764
No 11
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.86 E-value=2.2e-20 Score=192.70 Aligned_cols=228 Identities=20% Similarity=0.263 Sum_probs=181.5
Q ss_pred cccCCCCCccCCCCCCCCCCceeecCCccCCCcchhhhcCCCCCCCCcccCCCCCCCCccCCcccCCCCCceeeCCcccc
Q 035577 282 VMPDENSVKKLQGESLHEQWDKLPSKHFKIKRIKEWVNDLQHCSPLEESDETSVSNDQVKRDPKVLNGSTAVKVDGKVTA 361 (662)
Q Consensus 282 L~ls~N~I~~L~~~s~l~~L~~L~l~~~si~~L~~~~~~L~~l~~L~~L~~l~ls~n~L~~~p~~l~~L~~L~l~~~~~~ 361 (662)
++.+.+.++.++. ....+++.|++.++.++.++.. .+..+ .+|+.|++.++...
T Consensus 16 ~~c~~~~l~~ip~-~~~~~l~~L~l~~n~i~~~~~~--~~~~~-----------------------~~L~~L~l~~n~l~ 69 (285)
T 1ozn_A 16 TSCPQQGLQAVPV-GIPAASQRIFLHGNRISHVPAA--SFRAC-----------------------RNLTILWLHSNVLA 69 (285)
T ss_dssp EECCSSCCSSCCT-TCCTTCSEEECTTSCCCEECTT--TTTTC-----------------------TTCCEEECCSSCCC
T ss_pred EEcCcCCcccCCc-CCCCCceEEEeeCCcCCccCHH--HcccC-----------------------CCCCEEECCCCccc
Confidence 6677777877764 3456889999999888776521 12222 33444444443222
Q ss_pred chhhhHHHhhhccCCccEEEccCCC-CCCCC-C-CCCCCCCCEEEccCCCCcccCCCcCC--CCccEEEccCCCCCCCc-
Q 035577 362 GMEAVTKYISSLSASATTVQLSNHG-LVVIP-F-LSAFVSLKVLNLSGNAIVRITAGALP--RGLHILNLSKNNISTIE- 435 (662)
Q Consensus 362 ~l~~l~~~l~~l~~sL~~L~Ls~N~-L~~lp-~-l~~L~~L~~L~Ls~N~L~~l~~~~~~--~~L~~L~Ls~N~L~~lp- 435 (662)
.+. +..+..++. |++|+|++|. ++.++ . +..+++|++|+|++|.++.+++..+. ++|++|+|++|.|+.++
T Consensus 70 ~~~--~~~~~~l~~-L~~L~l~~n~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~ 146 (285)
T 1ozn_A 70 RID--AAAFTGLAL-LEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPD 146 (285)
T ss_dssp EEC--TTTTTTCTT-CCEEECCSCTTCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCT
T ss_pred eeC--HhhcCCccC-CCEEeCCCCCCccccCHHHhcCCcCCCEEECCCCcCCEECHhHhhCCcCCCEEECCCCcccccCH
Confidence 221 122333443 9999999997 88884 3 89999999999999999998777665 89999999999999886
Q ss_pred -CCCCCCCCCEEeCcCCCCcccccc-ccCCCCCcEEEcCCCCCCCc--ccccCCCCCcEEECCCCccCccccchHhhhcC
Q 035577 436 -GLRELTRLRVLDLSYNRILRIGHG-LASCSSLKELYLAGNKISEV--EGLHRLLKLTVLDLRFNKISTAKCLGQLAANY 511 (662)
Q Consensus 436 -~l~~L~~L~~LdLs~N~Ls~Lp~~-l~~L~~L~~L~Ls~N~L~~l--~~l~~L~~L~~LdLs~N~Ls~l~~l~~~l~~l 511 (662)
.+..+++|++|+|++|.|+.+|.. |..+++|+.|+|++|.|+++ ..+..+++|+.|+|++|.|++++ +..+..+
T Consensus 147 ~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~--~~~~~~l 224 (285)
T 1ozn_A 147 DTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALP--TEALAPL 224 (285)
T ss_dssp TTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCC--HHHHTTC
T ss_pred hHhccCCCccEEECCCCcccccCHHHhcCccccCEEECCCCcccccCHhHccCcccccEeeCCCCcCCcCC--HHHcccC
Confidence 488999999999999999998875 89999999999999999987 37889999999999999999885 5678899
Q ss_pred CCCcEEEccCCCCCCCCChHHHHHHHHhh
Q 035577 512 NSLQAISLEGNPAQKNVGDEQLKKNLQSL 540 (662)
Q Consensus 512 ~~L~~L~Ls~N~l~~~~~~~~l~~~l~~~ 540 (662)
++|+.|+|++|++.|.|+..++..|+...
T Consensus 225 ~~L~~L~l~~N~~~c~~~~~~~~~~l~~~ 253 (285)
T 1ozn_A 225 RALQYLRLNDNPWVCDCRARPLWAWLQKF 253 (285)
T ss_dssp TTCCEEECCSSCEECSGGGHHHHHHHHHC
T ss_pred cccCEEeccCCCccCCCCcHHHHHHHHhc
Confidence 99999999999999999988888877653
No 12
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.85 E-value=3.8e-20 Score=202.77 Aligned_cols=111 Identities=21% Similarity=0.291 Sum_probs=61.5
Q ss_pred CCCCEEeCcCCCCccc-cccccCCCCCcEEEcCCCCCCCcc--cccCCCCCcEEECCCCccCccccchHhhhcCCCCcEE
Q 035577 441 TRLRVLDLSYNRILRI-GHGLASCSSLKELYLAGNKISEVE--GLHRLLKLTVLDLRFNKISTAKCLGQLAANYNSLQAI 517 (662)
Q Consensus 441 ~~L~~LdLs~N~Ls~L-p~~l~~L~~L~~L~Ls~N~L~~l~--~l~~L~~L~~LdLs~N~Ls~l~~l~~~l~~l~~L~~L 517 (662)
++|++|++++|.++.+ |..|..+++|++|+|++|.|++++ .+..+++|+.|+|++|.|+.+. +..+..+++|++|
T Consensus 275 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~--~~~~~~l~~L~~L 352 (455)
T 3v47_A 275 SGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLGSID--SRMFENLDKLEVL 352 (455)
T ss_dssp SCCCEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEEC--GGGGTTCTTCCEE
T ss_pred cCceEEEecCccccccchhhcccCCCCCEEECCCCcccccChhHhcCcccCCEEECCCCccCCcC--hhHhcCcccCCEE
Confidence 3555556655555543 334556666666666666666552 4555666666666666665543 4445556666666
Q ss_pred EccCCCCCCCCChHHHHHHHHhhCccCceeecCCCCCCcccc
Q 035577 518 SLEGNPAQKNVGDEQLKKNLQSLLPHLVYFNWQPMKASTLKD 559 (662)
Q Consensus 518 ~Ls~N~l~~~~~~~~l~~~l~~~l~~L~~Ld~~~~~~~~l~~ 559 (662)
+|++|.+.+..+. ....+++|++|++..+.+..++.
T Consensus 353 ~Ls~N~l~~~~~~------~~~~l~~L~~L~L~~N~l~~~~~ 388 (455)
T 3v47_A 353 DLSYNHIRALGDQ------SFLGLPNLKELALDTNQLKSVPD 388 (455)
T ss_dssp ECCSSCCCEECTT------TTTTCTTCCEEECCSSCCSCCCT
T ss_pred ECCCCcccccChh------hccccccccEEECCCCccccCCH
Confidence 6666666543221 12345566666666665555443
No 13
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.85 E-value=1.3e-20 Score=208.45 Aligned_cols=265 Identities=18% Similarity=0.154 Sum_probs=167.1
Q ss_pred CcccCcccccccCCCCCccCCC--CCCCCCCceeecCCccCCCcchhhhcCCCCCCCCcccCCCCCCCCccCC----ccc
Q 035577 273 NYSALAKDWVMPDENSVKKLQG--ESLHEQWDKLPSKHFKIKRIKEWVNDLQHCSPLEESDETSVSNDQVKRD----PKV 346 (662)
Q Consensus 273 ~l~~L~~~~L~ls~N~I~~L~~--~s~l~~L~~L~l~~~si~~L~~~~~~L~~l~~L~~L~~l~ls~n~L~~~----p~~ 346 (662)
.+..|.. |+++.|.+..+.. +..+.+|+.|++.+|.++.++.. .+..+..|+. ++++.+.+... ...
T Consensus 54 ~l~~L~~--L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~--~~~~l~~L~~---L~Ls~n~i~~~~~~~~~~ 126 (477)
T 2id5_A 54 SFPHLEE--LELNENIVSAVEPGAFNNLFNLRTLGLRSNRLKLIPLG--VFTGLSNLTK---LDISENKIVILLDYMFQD 126 (477)
T ss_dssp TCTTCCE--EECTTSCCCEECTTTTTTCTTCCEEECCSSCCCSCCTT--SSTTCTTCCE---EECTTSCCCEECTTTTTT
T ss_pred CCCCCCE--EECCCCccCEeChhhhhCCccCCEEECCCCcCCccCcc--cccCCCCCCE---EECCCCccccCChhHccc
Confidence 3445554 6666666666633 55666677777766666665531 1233333333 33344444322 223
Q ss_pred CCCCCceeeCCccccchhhhHHHhhhccCCccEEEccCCCCCCCCC--CCCCCCCCEEEccCCCCcccCCCcCC--CCcc
Q 035577 347 LNGSTAVKVDGKVTAGMEAVTKYISSLSASATTVQLSNHGLVVIPF--LSAFVSLKVLNLSGNAIVRITAGALP--RGLH 422 (662)
Q Consensus 347 l~~L~~L~l~~~~~~~l~~l~~~l~~l~~sL~~L~Ls~N~L~~lp~--l~~L~~L~~L~Ls~N~L~~l~~~~~~--~~L~ 422 (662)
+.+|+.|++.++....+.. ..+..++. |+.|+|++|.++.++. |..+++|+.|+|++|.+..++...|. ++|+
T Consensus 127 l~~L~~L~l~~n~l~~~~~--~~~~~l~~-L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~ 203 (477)
T 2id5_A 127 LYNLKSLEVGDNDLVYISH--RAFSGLNS-LEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLK 203 (477)
T ss_dssp CTTCCEEEECCTTCCEECT--TSSTTCTT-CCEEEEESCCCSSCCHHHHTTCTTCCEEEEESCCCCEECTTCSCSCTTCC
T ss_pred cccCCEEECCCCccceeCh--hhccCCCC-CCEEECCCCcCcccChhHhcccCCCcEEeCCCCcCcEeChhhcccCcccc
Confidence 4566666666654433221 12333333 6777777777776664 66677777777777777666655554 5677
Q ss_pred EEEccCCCCCC-Cc-CCCCCCCCCEEeCcCCCCccccc-cccCCCCCcEEEcCCCCCCCcc--cccCCCCCcEEECCCCc
Q 035577 423 ILNLSKNNIST-IE-GLRELTRLRVLDLSYNRILRIGH-GLASCSSLKELYLAGNKISEVE--GLHRLLKLTVLDLRFNK 497 (662)
Q Consensus 423 ~L~Ls~N~L~~-lp-~l~~L~~L~~LdLs~N~Ls~Lp~-~l~~L~~L~~L~Ls~N~L~~l~--~l~~L~~L~~LdLs~N~ 497 (662)
.|+|++|.+.. ++ .+....+|+.|+|++|.|+.+|. .|..+++|+.|+|++|.|+.++ .+..+++|+.|+|++|+
T Consensus 204 ~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~ 283 (477)
T 2id5_A 204 VLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNPISTIEGSMLHELLRLQEIQLVGGQ 283 (477)
T ss_dssp EEEEECCTTCCEECTTTTTTCCCSEEEEESSCCCSCCHHHHTTCTTCCEEECCSSCCCEECTTSCTTCTTCCEEECCSSC
T ss_pred eeeCCCCccccccCcccccCccccEEECcCCcccccCHHHhcCccccCeeECCCCcCCccChhhccccccCCEEECCCCc
Confidence 77777765443 32 33444578888888888887774 3778888888888888888774 47778888888888888
Q ss_pred cCccccchHhhhcCCCCcEEEccCCCCCCCCChHHHHHHHHhhCccCceeecCCCCCC
Q 035577 498 ISTAKCLGQLAANYNSLQAISLEGNPAQKNVGDEQLKKNLQSLLPHLVYFNWQPMKAS 555 (662)
Q Consensus 498 Ls~l~~l~~~l~~l~~L~~L~Ls~N~l~~~~~~~~l~~~l~~~l~~L~~Ld~~~~~~~ 555 (662)
|+.+. +..+..+++|+.|+|++|.++...+. ....+++|+.|++..+.+.
T Consensus 284 l~~~~--~~~~~~l~~L~~L~L~~N~l~~~~~~------~~~~l~~L~~L~l~~N~l~ 333 (477)
T 2id5_A 284 LAVVE--PYAFRGLNYLRVLNVSGNQLTTLEES------VFHSVGNLETLILDSNPLA 333 (477)
T ss_dssp CSEEC--TTTBTTCTTCCEEECCSSCCSCCCGG------GBSCGGGCCEEECCSSCEE
T ss_pred cceEC--HHHhcCcccCCEEECCCCcCceeCHh------HcCCCcccCEEEccCCCcc
Confidence 88764 56677888888888888888763321 2345678888888877653
No 14
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.85 E-value=1.2e-19 Score=186.24 Aligned_cols=162 Identities=23% Similarity=0.360 Sum_probs=144.0
Q ss_pred ccEEEccCCCCCCCCC--CCCCCCCCEEEccCCCCcccCCCcCC--CCccEEEccCCCCCCCc--CCCCCCCCCEEeCcC
Q 035577 377 ATTVQLSNHGLVVIPF--LSAFVSLKVLNLSGNAIVRITAGALP--RGLHILNLSKNNISTIE--GLRELTRLRVLDLSY 450 (662)
Q Consensus 377 L~~L~Ls~N~L~~lp~--l~~L~~L~~L~Ls~N~L~~l~~~~~~--~~L~~L~Ls~N~L~~lp--~l~~L~~L~~LdLs~ 450 (662)
|++|+|++|.|+.+|. |..+++|++|+|++|.|+.++...|. ++|++|+|++|.|+.++ .|..+++|++|+|++
T Consensus 63 L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~ 142 (270)
T 2o6q_A 63 LRLLYLNDNKLQTLPAGIFKELKNLETLWVTDNKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGY 142 (270)
T ss_dssp CCEEECCSSCCSCCCTTTTSSCTTCCEEECCSSCCCCCCTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred CCEEECCCCccCeeChhhhcCCCCCCEEECCCCcCCcCCHhHcccccCCCEEECCCCccCeeCHHHhCcCcCCCEEECCC
Confidence 8899999999998886 78899999999999999999877765 79999999999999886 488999999999999
Q ss_pred CCCcccccc-ccCCCCCcEEEcCCCCCCCcc--cccCCCCCcEEECCCCccCccccchHhhhcCCCCcEEEccCCCCCCC
Q 035577 451 NRILRIGHG-LASCSSLKELYLAGNKISEVE--GLHRLLKLTVLDLRFNKISTAKCLGQLAANYNSLQAISLEGNPAQKN 527 (662)
Q Consensus 451 N~Ls~Lp~~-l~~L~~L~~L~Ls~N~L~~l~--~l~~L~~L~~LdLs~N~Ls~l~~l~~~l~~l~~L~~L~Ls~N~l~~~ 527 (662)
|.|+.+|.. |..+++|+.|+|++|.|+.++ .+..+++|+.|+|++|.|+.++ +..+..+++|+.|+|++|+|.|.
T Consensus 143 n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~--~~~~~~l~~L~~L~l~~N~~~c~ 220 (270)
T 2o6q_A 143 NELQSLPKGVFDKLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLKRVP--EGAFDSLEKLKMLQLQENPWDCT 220 (270)
T ss_dssp SCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCCSCCC--TTTTTTCTTCCEEECCSSCBCCS
T ss_pred CcCCccCHhHccCCcccceeEecCCcCcEeChhHhccCCCcCEEECCCCcCCcCC--HHHhccccCCCEEEecCCCeeCC
Confidence 999999876 889999999999999999985 4888999999999999999885 55678899999999999999999
Q ss_pred CC-hHHHHHHHHhh
Q 035577 528 VG-DEQLKKNLQSL 540 (662)
Q Consensus 528 ~~-~~~l~~~l~~~ 540 (662)
|. ..++..|+...
T Consensus 221 c~~~~~~~~~l~~~ 234 (270)
T 2o6q_A 221 CNGIIYMAKWLKKK 234 (270)
T ss_dssp SSSSHHHHHHHHHH
T ss_pred CccHHHHHHHHHhh
Confidence 97 45566676654
No 15
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.85 E-value=2.5e-20 Score=194.26 Aligned_cols=187 Identities=23% Similarity=0.242 Sum_probs=157.9
Q ss_pred CCCCceeeCCccccchhhhHHHhhhccCCccEEEccCCCCCCCCCCCCCCCCCEEEccCCCCcccCCCcCC-CCccEEEc
Q 035577 348 NGSTAVKVDGKVTAGMEAVTKYISSLSASATTVQLSNHGLVVIPFLSAFVSLKVLNLSGNAIVRITAGALP-RGLHILNL 426 (662)
Q Consensus 348 ~~L~~L~l~~~~~~~l~~l~~~l~~l~~sL~~L~Ls~N~L~~lp~l~~L~~L~~L~Ls~N~L~~l~~~~~~-~~L~~L~L 426 (662)
..++.|++.++.+..+. +..+..++. |+.|+|++|.|+.++....+++|++|+|++|.|+.++..... ++|++|+|
T Consensus 31 ~~l~~L~L~~N~l~~~~--~~~~~~l~~-L~~L~L~~n~l~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~L~~L~l 107 (290)
T 1p9a_G 31 KDTTILHLSENLLYTFS--LATLMPYTR-LTQLNLDRAELTKLQVDGTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDV 107 (290)
T ss_dssp TTCCEEECTTSCCSEEE--GGGGTTCTT-CCEEECTTSCCCEEECCSCCTTCCEEECCSSCCSSCCCCTTTCTTCCEEEC
T ss_pred CCCCEEEcCCCcCCccC--HHHhhcCCC-CCEEECCCCccCcccCCCCCCcCCEEECCCCcCCcCchhhccCCCCCEEEC
Confidence 45667777766554432 233445554 999999999999998888999999999999999988864332 79999999
Q ss_pred cCCCCCCCc--CCCCCCCCCEEeCcCCCCcccccc-ccCCCCCcEEEcCCCCCCCcc--cccCCCCCcEEECCCCccCcc
Q 035577 427 SKNNISTIE--GLRELTRLRVLDLSYNRILRIGHG-LASCSSLKELYLAGNKISEVE--GLHRLLKLTVLDLRFNKISTA 501 (662)
Q Consensus 427 s~N~L~~lp--~l~~L~~L~~LdLs~N~Ls~Lp~~-l~~L~~L~~L~Ls~N~L~~l~--~l~~L~~L~~LdLs~N~Ls~l 501 (662)
++|+|+.++ .|..+++|++|+|++|.|+.+|.. |..+++|+.|+|++|+|+.++ .+..+++|+.|+|++|+|+.+
T Consensus 108 ~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~i 187 (290)
T 1p9a_G 108 SFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLYTI 187 (290)
T ss_dssp CSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCSCCCTTTTTTCTTCCEEECCSSCCCCC
T ss_pred CCCcCcccCHHHHcCCCCCCEEECCCCCCCccChhhcccccCCCEEECCCCcCCccCHHHhcCcCCCCEEECCCCcCCcc
Confidence 999999986 589999999999999999999876 789999999999999999996 467899999999999999987
Q ss_pred ccchHhhhcCCCCcEEEccCCCCCCCCChHHHHHHHHhh
Q 035577 502 KCLGQLAANYNSLQAISLEGNPAQKNVGDEQLKKNLQSL 540 (662)
Q Consensus 502 ~~l~~~l~~l~~L~~L~Ls~N~l~~~~~~~~l~~~l~~~ 540 (662)
+..+..+.+|+.|+|.+|+|.|.|...++..|+...
T Consensus 188 ---p~~~~~~~~L~~l~L~~Np~~C~c~~~~l~~wl~~~ 223 (290)
T 1p9a_G 188 ---PKGFFGSHLLPFAFLHGNPWLCNCEILYFRRWLQDN 223 (290)
T ss_dssp ---CTTTTTTCCCSEEECCSCCBCCSGGGHHHHHHHHHT
T ss_pred ---ChhhcccccCCeEEeCCCCccCcCccHHHHHHHHhC
Confidence 445567789999999999999999888888887764
No 16
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.85 E-value=1.5e-20 Score=214.82 Aligned_cols=257 Identities=19% Similarity=0.225 Sum_probs=144.2
Q ss_pred cccCcccccccCCCCCccCCC--CCCCCCCceeecCCccCCCcchhhhcCCCCCCCCcccCCCCCCCCccCCcc----cC
Q 035577 274 YSALAKDWVMPDENSVKKLQG--ESLHEQWDKLPSKHFKIKRIKEWVNDLQHCSPLEESDETSVSNDQVKRDPK----VL 347 (662)
Q Consensus 274 l~~L~~~~L~ls~N~I~~L~~--~s~l~~L~~L~l~~~si~~L~~~~~~L~~l~~L~~L~~l~ls~n~L~~~p~----~l 347 (662)
+..|.. ++++.|.+..++. +..+.+|+.|++.+|.+..++.. .+..+..|.. ++++.+.+..+|. .+
T Consensus 74 l~~L~~--L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~--~~~~l~~L~~---L~L~~n~l~~l~~~~~~~l 146 (597)
T 3oja_B 74 FRQVEL--LNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPH--VFQNVPLLTV---LVLERNDLSSLPRGIFHNT 146 (597)
T ss_dssp CCCCSE--EECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTT--TTTTCTTCCE---EECCSSCCCCCCTTTTTTC
T ss_pred CCCCcE--EECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHH--HHcCCCCCCE---EEeeCCCCCCCCHHHhccC
Confidence 345555 7777777777764 66677777777777777766531 2233333333 3344455544442 35
Q ss_pred CCCCceeeCCccccchhhhHHHhhhccCCccEEEccCCCCCCCCCCCCCCCCCEEEccCCCC------------------
Q 035577 348 NGSTAVKVDGKVTAGMEAVTKYISSLSASATTVQLSNHGLVVIPFLSAFVSLKVLNLSGNAI------------------ 409 (662)
Q Consensus 348 ~~L~~L~l~~~~~~~l~~l~~~l~~l~~sL~~L~Ls~N~L~~lp~l~~L~~L~~L~Ls~N~L------------------ 409 (662)
.+|+.|++.++.+..+. +..+..++. |+.|+|++|.|+.++ +..+++|+.|++++|.+
T Consensus 147 ~~L~~L~Ls~N~l~~~~--~~~~~~l~~-L~~L~L~~N~l~~~~-~~~l~~L~~L~l~~n~l~~l~~~~~L~~L~ls~n~ 222 (597)
T 3oja_B 147 PKLTTLSMSNNNLERIE--DDTFQATTS-LQNLQLSSNRLTHVD-LSLIPSLFHANVSYNLLSTLAIPIAVEELDASHNS 222 (597)
T ss_dssp TTCCEEECCSSCCCBCC--TTTTTTCTT-CCEEECTTSCCSBCC-GGGCTTCSEEECCSSCCSEEECCTTCSEEECCSSC
T ss_pred CCCCEEEeeCCcCCCCC--hhhhhcCCc-CcEEECcCCCCCCcC-hhhhhhhhhhhcccCccccccCCchhheeeccCCc
Confidence 66677777765444322 122334443 777777777777654 23344444444444433
Q ss_pred -cccCCCcCCCCccEEEccCCCCCCCcCCCCCCCCCEEeCcCCCCccc-cccccCCCCCcEEEcCCCCCCCcc-cccCCC
Q 035577 410 -VRITAGALPRGLHILNLSKNNISTIEGLRELTRLRVLDLSYNRILRI-GHGLASCSSLKELYLAGNKISEVE-GLHRLL 486 (662)
Q Consensus 410 -~~l~~~~~~~~L~~L~Ls~N~L~~lp~l~~L~~L~~LdLs~N~Ls~L-p~~l~~L~~L~~L~Ls~N~L~~l~-~l~~L~ 486 (662)
..++.. ++++|+.|+|++|.|+.++.+..+++|+.|+|++|.|+.+ |..|+.+++|+.|+|++|.|++++ .+..++
T Consensus 223 l~~~~~~-~~~~L~~L~L~~n~l~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~ 301 (597)
T 3oja_B 223 INVVRGP-VNVELTILKLQHNNLTDTAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVALNLYGQPIP 301 (597)
T ss_dssp CCEEECS-CCSCCCEEECCSSCCCCCGGGGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECTTSCCCEEECSSSCCT
T ss_pred ccccccc-cCCCCCEEECCCCCCCCChhhccCCCCCEEECCCCccCCCCHHHhcCccCCCEEECCCCCCCCCCcccccCC
Confidence 333221 2245666666666666655566666666666666666644 344666666666666666666654 334456
Q ss_pred CCcEEECCCCccCccccchHhhhcCCCCcEEEccCCCCCCCCChHHHHHHHHhhCccCceeecCCCCC
Q 035577 487 KLTVLDLRFNKISTAKCLGQLAANYNSLQAISLEGNPAQKNVGDEQLKKNLQSLLPHLVYFNWQPMKA 554 (662)
Q Consensus 487 ~L~~LdLs~N~Ls~l~~l~~~l~~l~~L~~L~Ls~N~l~~~~~~~~l~~~l~~~l~~L~~Ld~~~~~~ 554 (662)
+|+.|+|++|.|+.+ +..+..+++|+.|+|++|++.+. + ...++.|++|++..+.+
T Consensus 302 ~L~~L~Ls~N~l~~i---~~~~~~l~~L~~L~L~~N~l~~~-~--------~~~~~~L~~L~l~~N~~ 357 (597)
T 3oja_B 302 TLKVLDLSHNHLLHV---ERNQPQFDRLENLYLDHNSIVTL-K--------LSTHHTLKNLTLSHNDW 357 (597)
T ss_dssp TCCEEECCSSCCCCC---GGGHHHHTTCSEEECCSSCCCCC-C--------CCTTCCCSEEECCSSCE
T ss_pred CCcEEECCCCCCCcc---CcccccCCCCCEEECCCCCCCCc-C--------hhhcCCCCEEEeeCCCC
Confidence 666666666666654 33345556666666666666542 1 23455666666666553
No 17
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.84 E-value=1.2e-19 Score=198.70 Aligned_cols=141 Identities=26% Similarity=0.313 Sum_probs=100.9
Q ss_pred CCCCEEEccCCCCcccCCCcCC--CCccEEEccCCCCCCCc--CCCCCCCCCEEeCcCCCCccc-cccccCCCCCcEEEc
Q 035577 397 VSLKVLNLSGNAIVRITAGALP--RGLHILNLSKNNISTIE--GLRELTRLRVLDLSYNRILRI-GHGLASCSSLKELYL 471 (662)
Q Consensus 397 ~~L~~L~Ls~N~L~~l~~~~~~--~~L~~L~Ls~N~L~~lp--~l~~L~~L~~LdLs~N~Ls~L-p~~l~~L~~L~~L~L 471 (662)
++|++|+|++|.++.+.+..+. ++|++|+|++|.|+.++ .|..+++|++|+|++|.|+.+ |..|..+++|++|+|
T Consensus 275 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L 354 (455)
T 3v47_A 275 SGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDL 354 (455)
T ss_dssp SCCCEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGGTTCTTCCEEEC
T ss_pred cCceEEEecCccccccchhhcccCCCCCEEECCCCcccccChhHhcCcccCCEEECCCCccCCcChhHhcCcccCCEEEC
Confidence 4677777777777766655554 67788888888777653 577777888888888877766 344777788888888
Q ss_pred CCCCCCCc-c-cccCCCCCcEEECCCCccCccccchHhhhcCCCCcEEEccCCCCCCCCCh-HHHHHHHHh
Q 035577 472 AGNKISEV-E-GLHRLLKLTVLDLRFNKISTAKCLGQLAANYNSLQAISLEGNPAQKNVGD-EQLKKNLQS 539 (662)
Q Consensus 472 s~N~L~~l-~-~l~~L~~L~~LdLs~N~Ls~l~~l~~~l~~l~~L~~L~Ls~N~l~~~~~~-~~l~~~l~~ 539 (662)
++|+|+.+ + .+..+++|+.|+|++|+|+.++ +..+..+++|+.|+|++|++.|.|+. .++..|+..
T Consensus 355 s~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~--~~~~~~l~~L~~L~l~~N~l~~~~~~~~~l~~~l~~ 423 (455)
T 3v47_A 355 SYNHIRALGDQSFLGLPNLKELALDTNQLKSVP--DGIFDRLTSLQKIWLHTNPWDCSCPRIDYLSRWLNK 423 (455)
T ss_dssp CSSCCCEECTTTTTTCTTCCEEECCSSCCSCCC--TTTTTTCTTCCEEECCSSCBCCCTTTTHHHHHHHHH
T ss_pred CCCcccccChhhccccccccEEECCCCccccCC--HhHhccCCcccEEEccCCCcccCCCcchHHHHHHHh
Confidence 88887766 2 5777778888888888887764 44556777888888888888887773 344455543
No 18
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.84 E-value=2.9e-20 Score=196.29 Aligned_cols=254 Identities=22% Similarity=0.236 Sum_probs=148.1
Q ss_pred cccCCCCCccCCC--CCCCCCCceeecCCccCCCcchhhhcCCCCCCCCcccCCCCCCCCccCCccc-CCCCCceeeCCc
Q 035577 282 VMPDENSVKKLQG--ESLHEQWDKLPSKHFKIKRIKEWVNDLQHCSPLEESDETSVSNDQVKRDPKV-LNGSTAVKVDGK 358 (662)
Q Consensus 282 L~ls~N~I~~L~~--~s~l~~L~~L~l~~~si~~L~~~~~~L~~l~~L~~L~~l~ls~n~L~~~p~~-l~~L~~L~l~~~ 358 (662)
++++.|.+..++. +..+.+|+.|++.+|.+..+.. ..+..+..|+. ++++.+.+..+|.. ..+|+.|++.++
T Consensus 59 L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~--~~~~~l~~L~~---L~L~~n~l~~l~~~~~~~L~~L~l~~n 133 (332)
T 2ft3_A 59 LDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHE--KAFSPLRKLQK---LYISKNHLVEIPPNLPSSLVELRIHDN 133 (332)
T ss_dssp EECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECG--GGSTTCTTCCE---EECCSSCCCSCCSSCCTTCCEEECCSS
T ss_pred EECCCCcCCccCHhHhhCCCCCcEEECCCCccCccCH--hHhhCcCCCCE---EECCCCcCCccCccccccCCEEECCCC
Confidence 6677777777654 6667777777777777766521 12344444443 33444555444432 356667776665
Q ss_pred cccchhhhHHHhhhccCCccEEEccCCCCCC---CCC-CCCCCCCCEEEccCCCCcccCCCcCCCCccEEEccCCCCCCC
Q 035577 359 VTAGMEAVTKYISSLSASATTVQLSNHGLVV---IPF-LSAFVSLKVLNLSGNAIVRITAGALPRGLHILNLSKNNISTI 434 (662)
Q Consensus 359 ~~~~l~~l~~~l~~l~~sL~~L~Ls~N~L~~---lp~-l~~L~~L~~L~Ls~N~L~~l~~~~~~~~L~~L~Ls~N~L~~l 434 (662)
....+.. ..+..++. |+.|++++|.++. .+. +..+ +|++|++++|.++.++...+ ++|++|+|++|.|+.+
T Consensus 134 ~i~~~~~--~~~~~l~~-L~~L~l~~n~l~~~~~~~~~~~~l-~L~~L~l~~n~l~~l~~~~~-~~L~~L~l~~n~i~~~ 208 (332)
T 2ft3_A 134 RIRKVPK--GVFSGLRN-MNCIEMGGNPLENSGFEPGAFDGL-KLNYLRISEAKLTGIPKDLP-ETLNELHLDHNKIQAI 208 (332)
T ss_dssp CCCCCCS--GGGSSCSS-CCEEECCSCCCBGGGSCTTSSCSC-CCSCCBCCSSBCSSCCSSSC-SSCSCCBCCSSCCCCC
T ss_pred ccCccCH--hHhCCCcc-CCEEECCCCccccCCCCcccccCC-ccCEEECcCCCCCccCcccc-CCCCEEECCCCcCCcc
Confidence 4443321 12333433 6777777777652 222 5555 67777777777766654433 5677777777777765
Q ss_pred c--CCCCCCCCCEEeCcCCCCccccc-cccCCCCCcEEEcCCCCCCCcc-cccCCCCCcEEECCCCccCccccchHhhhc
Q 035577 435 E--GLRELTRLRVLDLSYNRILRIGH-GLASCSSLKELYLAGNKISEVE-GLHRLLKLTVLDLRFNKISTAKCLGQLAAN 510 (662)
Q Consensus 435 p--~l~~L~~L~~LdLs~N~Ls~Lp~-~l~~L~~L~~L~Ls~N~L~~l~-~l~~L~~L~~LdLs~N~Ls~l~~l~~~l~~ 510 (662)
+ .+..+++|++|+|++|.|+.++. .+..+++|+.|+|++|+|+.+| .+..+++|+.|+|++|.|+.++ +..+..
T Consensus 209 ~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~lp~~l~~l~~L~~L~l~~N~l~~~~--~~~~~~ 286 (332)
T 2ft3_A 209 ELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLSRVPAGLPDLKLLQVVYLHTNNITKVG--VNDFCP 286 (332)
T ss_dssp CTTSSTTCTTCSCCBCCSSCCCCCCTTGGGGCTTCCEEECCSSCCCBCCTTGGGCTTCCEEECCSSCCCBCC--TTSSSC
T ss_pred CHHHhcCCCCCCEEECCCCcCCcCChhHhhCCCCCCEEECCCCcCeecChhhhcCccCCEEECCCCCCCccC--hhHccc
Confidence 4 46667777777777777776654 4666777777777777777664 4666777777777777777653 222222
Q ss_pred ------CCCCcEEEccCCCCCC-CCChHHHHHHHHhhCccCceeecCCC
Q 035577 511 ------YNSLQAISLEGNPAQK-NVGDEQLKKNLQSLLPHLVYFNWQPM 552 (662)
Q Consensus 511 ------l~~L~~L~Ls~N~l~~-~~~~~~l~~~l~~~l~~L~~Ld~~~~ 552 (662)
...|+.|++.+|++.. .++. .....++.|+.+++.++
T Consensus 287 ~~~~~~~~~l~~L~l~~N~~~~~~~~~-----~~~~~l~~L~~l~l~~n 330 (332)
T 2ft3_A 287 VGFGVKRAYYNGISLFNNPVPYWEVQP-----ATFRCVTDRLAIQFGNY 330 (332)
T ss_dssp SSCCSSSCCBSEEECCSSSSCGGGSCG-----GGGTTBCCSTTEEC---
T ss_pred cccccccccccceEeecCcccccccCc-----ccccccchhhhhhcccc
Confidence 3556777777777652 1111 12344566666665544
No 19
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.83 E-value=3.6e-20 Score=197.19 Aligned_cols=187 Identities=17% Similarity=0.220 Sum_probs=122.9
Q ss_pred CCCCCceeeCCccccchhhhHHHhhhccCCccEEEccCCCCCCCCC---CCCCCCCCEEEccCC-CCcccCCCcCC--CC
Q 035577 347 LNGSTAVKVDGKVTAGMEAVTKYISSLSASATTVQLSNHGLVVIPF---LSAFVSLKVLNLSGN-AIVRITAGALP--RG 420 (662)
Q Consensus 347 l~~L~~L~l~~~~~~~l~~l~~~l~~l~~sL~~L~Ls~N~L~~lp~---l~~L~~L~~L~Ls~N-~L~~l~~~~~~--~~ 420 (662)
+.+|+.|++.++....+.. ..+..++. |++|+|++|.++.+|. +..+++|++|++++| .+..++...+. ++
T Consensus 99 l~~L~~L~Ls~n~l~~~~~--~~~~~l~~-L~~L~L~~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~ 175 (353)
T 2z80_A 99 LGSLEHLDLSYNYLSNLSS--SWFKPLSS-LTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTF 175 (353)
T ss_dssp CTTCCEEECCSSCCSSCCH--HHHTTCTT-CSEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCE
T ss_pred CCCCCEEECCCCcCCcCCH--hHhCCCcc-CCEEECCCCCCcccCchhhhccCCCCcEEECCCCccccccCHHHccCCCC
Confidence 4556666666654443321 12334443 7777777777777764 677777777777777 46666655554 67
Q ss_pred ccEEEccCCCCCCC-c-CCCCCCCCCEEeCcCCCCcccccc-ccCCCCCcEEEcCCCCCCCcc-----------------
Q 035577 421 LHILNLSKNNISTI-E-GLRELTRLRVLDLSYNRILRIGHG-LASCSSLKELYLAGNKISEVE----------------- 480 (662)
Q Consensus 421 L~~L~Ls~N~L~~l-p-~l~~L~~L~~LdLs~N~Ls~Lp~~-l~~L~~L~~L~Ls~N~L~~l~----------------- 480 (662)
|++|+|++|.++.+ + .+..+++|++|++++|.++.+|.. +..+++|+.|+|++|.+++++
T Consensus 176 L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~~~~l~~l~ 255 (353)
T 2z80_A 176 LEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQHILLLEIFVDVTSSVECLELRDTDLDTFHFSELSTGETNSLIKKFT 255 (353)
T ss_dssp EEEEEEEETTCCEECTTTTTTCSEEEEEEEECSCSTTHHHHHHHHTTTEEEEEEESCBCTTCCCC------CCCCCCEEE
T ss_pred CCEEECCCCCcCccCHHHHhccccCCeecCCCCccccchhhhhhhcccccEEECCCCccccccccccccccccchhhccc
Confidence 77777777777765 2 577777777777777777777655 445677777777777776532
Q ss_pred ----------------cccCCCCCcEEECCCCccCccccchHhhhcCCCCcEEEccCCCCCCCCCh-HHHHHHHH
Q 035577 481 ----------------GLHRLLKLTVLDLRFNKISTAKCLGQLAANYNSLQAISLEGNPAQKNVGD-EQLKKNLQ 538 (662)
Q Consensus 481 ----------------~l~~L~~L~~LdLs~N~Ls~l~~l~~~l~~l~~L~~L~Ls~N~l~~~~~~-~~l~~~l~ 538 (662)
.+..+++|+.|+|++|+|+.++ ...+..+++|++|+|++|++.|.|+. ..+..|+.
T Consensus 256 L~~~~l~~~~l~~l~~~l~~l~~L~~L~Ls~N~l~~i~--~~~~~~l~~L~~L~L~~N~~~~~~~~l~~l~~~~~ 328 (353)
T 2z80_A 256 FRNVKITDESLFQVMKLLNQISGLLELEFSRNQLKSVP--DGIFDRLTSLQKIWLHTNPWDCSCPRIDYLSRWLN 328 (353)
T ss_dssp EESCBCCHHHHHHHHHHHHTCTTCCEEECCSSCCCCCC--TTTTTTCTTCCEEECCSSCBCCCHHHHHHHHHHHH
T ss_pred cccccccCcchhhhHHHHhcccCCCEEECCCCCCCccC--HHHHhcCCCCCEEEeeCCCccCcCCCcHHHHHHHH
Confidence 2456677888888888777664 33456777788888888888777763 33344443
No 20
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.83 E-value=3.8e-20 Score=205.09 Aligned_cols=220 Identities=18% Similarity=0.220 Sum_probs=171.4
Q ss_pred CceeecCCccCCCcchhhhcCCCCCCCCcccCCCCCCCCccCCcccCCCCCceeeCCccccchhhhHHHhhhccCCccEE
Q 035577 301 WDKLPSKHFKIKRIKEWVNDLQHCSPLEESDETSVSNDQVKRDPKVLNGSTAVKVDGKVTAGMEAVTKYISSLSASATTV 380 (662)
Q Consensus 301 L~~L~l~~~si~~L~~~~~~L~~l~~L~~L~~l~ls~n~L~~~p~~l~~L~~L~l~~~~~~~l~~l~~~l~~l~~sL~~L 380 (662)
++.|++.++.++.++.+. . .+..++++.+.+..+|..+.+|+.|++.++....+.. ++..|++|
T Consensus 73 l~~L~l~~~~l~~lp~~~------~---~L~~L~l~~n~l~~lp~~~~~L~~L~l~~n~l~~l~~-------~~~~L~~L 136 (454)
T 1jl5_A 73 AHELELNNLGLSSLPELP------P---HLESLVASCNSLTELPELPQSLKSLLVDNNNLKALSD-------LPPLLEYL 136 (454)
T ss_dssp CSEEECTTSCCSCCCSCC------T---TCSEEECCSSCCSSCCCCCTTCCEEECCSSCCSCCCS-------CCTTCCEE
T ss_pred CCEEEecCCccccCCCCc------C---CCCEEEccCCcCCccccccCCCcEEECCCCccCcccC-------CCCCCCEE
Confidence 377777777777766431 2 3344556777777777777889999998876665443 33469999
Q ss_pred EccCCCCCCCCCCCCCCCCCEEEccCCCCcccCCCcCCCCccEEEccCCCCCCCcCCCCCCCCCEEeCcCCCCccccccc
Q 035577 381 QLSNHGLVVIPFLSAFVSLKVLNLSGNAIVRITAGALPRGLHILNLSKNNISTIEGLRELTRLRVLDLSYNRILRIGHGL 460 (662)
Q Consensus 381 ~Ls~N~L~~lp~l~~L~~L~~L~Ls~N~L~~l~~~~~~~~L~~L~Ls~N~L~~lp~l~~L~~L~~LdLs~N~Ls~Lp~~l 460 (662)
+|++|.++.+|.+..+++|++|++++|.++.++.. +.+|++|+|++|+++.+|.+..+++|++|++++|.++.+|...
T Consensus 137 ~L~~n~l~~lp~~~~l~~L~~L~l~~N~l~~lp~~--~~~L~~L~L~~n~l~~l~~~~~l~~L~~L~l~~N~l~~l~~~~ 214 (454)
T 1jl5_A 137 GVSNNQLEKLPELQNSSFLKIIDVDNNSLKKLPDL--PPSLEFIAAGNNQLEELPELQNLPFLTAIYADNNSLKKLPDLP 214 (454)
T ss_dssp ECCSSCCSSCCCCTTCTTCCEEECCSSCCSCCCCC--CTTCCEEECCSSCCSSCCCCTTCTTCCEEECCSSCCSSCCCCC
T ss_pred ECcCCCCCCCcccCCCCCCCEEECCCCcCcccCCC--cccccEEECcCCcCCcCccccCCCCCCEEECCCCcCCcCCCCc
Confidence 99999999999999999999999999999987743 3699999999999999999999999999999999999887543
Q ss_pred cCCCCCcEEEcCCCCCCCcccccCCCCCcEEECCCCccCccccchHhhhcCCCCcEEEccCCCCCCCCChHHHHHHHHhh
Q 035577 461 ASCSSLKELYLAGNKISEVEGLHRLLKLTVLDLRFNKISTAKCLGQLAANYNSLQAISLEGNPAQKNVGDEQLKKNLQSL 540 (662)
Q Consensus 461 ~~L~~L~~L~Ls~N~L~~l~~l~~L~~L~~LdLs~N~Ls~l~~l~~~l~~l~~L~~L~Ls~N~l~~~~~~~~l~~~l~~~ 540 (662)
++|++|++++|.++.++.+..+++|+.|++++|++++++. .+++|+.|++++|.+.+ ++. .
T Consensus 215 ---~~L~~L~l~~n~l~~lp~~~~l~~L~~L~l~~N~l~~l~~------~~~~L~~L~l~~N~l~~-l~~---------~ 275 (454)
T 1jl5_A 215 ---LSLESIVAGNNILEELPELQNLPFLTTIYADNNLLKTLPD------LPPSLEALNVRDNYLTD-LPE---------L 275 (454)
T ss_dssp ---TTCCEEECCSSCCSSCCCCTTCTTCCEEECCSSCCSSCCS------CCTTCCEEECCSSCCSC-CCC---------C
T ss_pred ---CcccEEECcCCcCCcccccCCCCCCCEEECCCCcCCcccc------cccccCEEECCCCcccc-cCc---------c
Confidence 5889999999999888888888899999999998887642 23678888888888776 221 1
Q ss_pred CccCceeecCCCCCCcc
Q 035577 541 LPHLVYFNWQPMKASTL 557 (662)
Q Consensus 541 l~~L~~Ld~~~~~~~~l 557 (662)
+++|++|++..+.+..+
T Consensus 276 ~~~L~~L~ls~N~l~~l 292 (454)
T 1jl5_A 276 PQSLTFLDVSENIFSGL 292 (454)
T ss_dssp CTTCCEEECCSSCCSEE
T ss_pred cCcCCEEECcCCccCcc
Confidence 35666666666665554
No 21
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.83 E-value=6.1e-20 Score=208.66 Aligned_cols=263 Identities=16% Similarity=0.192 Sum_probs=195.0
Q ss_pred CcccCcccccccCCCCCccCCCCCCCCCCceeecCCccCCCcchhhhcCCCCCCCCcccCCCCCCCC-ccC-CcccCCCC
Q 035577 273 NYSALAKDWVMPDENSVKKLQGESLHEQWDKLPSKHFKIKRIKEWVNDLQHCSPLEESDETSVSNDQ-VKR-DPKVLNGS 350 (662)
Q Consensus 273 ~l~~L~~~~L~ls~N~I~~L~~~s~l~~L~~L~l~~~si~~L~~~~~~L~~l~~L~~L~~l~ls~n~-L~~-~p~~l~~L 350 (662)
.+..+.. +.+..|.+..++.+..+.+|+.|++.+|.+..++.+ .+..|+.|.. ..+. +.. ....+.+|
T Consensus 283 ~l~~L~~--L~l~~~~~~~l~~l~~~~~L~~L~l~~n~l~~lp~~-----~l~~L~~L~l---~~n~~~~~~~~~~l~~L 352 (606)
T 3vq2_A 283 CLANVSA--MSLAGVSIKYLEDVPKHFKWQSLSIIRCQLKQFPTL-----DLPFLKSLTL---TMNKGSISFKKVALPSL 352 (606)
T ss_dssp GGTTCSE--EEEESCCCCCCCCCCTTCCCSEEEEESCCCSSCCCC-----CCSSCCEEEE---ESCSSCEECCCCCCTTC
T ss_pred cCCCCCE--EEecCccchhhhhccccccCCEEEcccccCcccccC-----CCCccceeec---cCCcCccchhhccCCCC
Confidence 3455665 788889999998888889999999999998777743 4455554443 2221 111 11236788
Q ss_pred CceeeCCccccchhhhHHHhhhccCCccEEEccCCCCCCCCC-CCCCCCCCEEEccCCCCcccCC-CcCC--CCccEEEc
Q 035577 351 TAVKVDGKVTAGMEAVTKYISSLSASATTVQLSNHGLVVIPF-LSAFVSLKVLNLSGNAIVRITA-GALP--RGLHILNL 426 (662)
Q Consensus 351 ~~L~l~~~~~~~l~~l~~~l~~l~~sL~~L~Ls~N~L~~lp~-l~~L~~L~~L~Ls~N~L~~l~~-~~~~--~~L~~L~L 426 (662)
+.|++.++....+...+..+..++. |+.|+|++|.++.+|. +..+++|++|+|++|.+..+++ ..+. ++|++|+|
T Consensus 353 ~~L~ls~n~l~~~~~~~~~~~~~~~-L~~L~L~~n~l~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l 431 (606)
T 3vq2_A 353 SYLDLSRNALSFSGCCSYSDLGTNS-LRHLDLSFNGAIIMSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDI 431 (606)
T ss_dssp CEEECCSSCEEEEEECCHHHHCCSC-CCEEECCSCSEEEECCCCTTCTTCCEEECTTSEEESTTTTTTTTTCTTCCEEEC
T ss_pred CEEECcCCccCCCcchhhhhccCCc-ccEeECCCCccccchhhccCCCCCCeeECCCCccCCccChhhhhccccCCEEEC
Confidence 8888888766555433455556654 8899999998888775 8888899999999998887765 3443 78899999
Q ss_pred cCCCCCCC-c-CCCCCCCCCEEeCcCCCCcc--ccccccCCCCCcEEEcCCCCCCCcc--cccCCCCCcEEECCCCccCc
Q 035577 427 SKNNISTI-E-GLRELTRLRVLDLSYNRILR--IGHGLASCSSLKELYLAGNKISEVE--GLHRLLKLTVLDLRFNKIST 500 (662)
Q Consensus 427 s~N~L~~l-p-~l~~L~~L~~LdLs~N~Ls~--Lp~~l~~L~~L~~L~Ls~N~L~~l~--~l~~L~~L~~LdLs~N~Ls~ 500 (662)
++|.++.. + .+..+++|++|++++|.++. +|..|..+++|++|+|++|.|++++ .+..+++|+.|+|++|+|++
T Consensus 432 ~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~ 511 (606)
T 3vq2_A 432 SYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLF 511 (606)
T ss_dssp TTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSC
T ss_pred cCCCCCccchhhhcCCCCCCEEECCCCcCCCcchHHhhccCCCCCEEECCCCcCCccChhhhcccccCCEEECCCCcCCC
Confidence 99988864 3 57888889999999888885 6777888888999999988888773 57888888999999888888
Q ss_pred cccchHhhhcCCCCcEEEccCCCCCCCCChHHHHHHHHhhCc-cCceeecCCCCCC
Q 035577 501 AKCLGQLAANYNSLQAISLEGNPAQKNVGDEQLKKNLQSLLP-HLVYFNWQPMKAS 555 (662)
Q Consensus 501 l~~l~~~l~~l~~L~~L~Ls~N~l~~~~~~~~l~~~l~~~l~-~L~~Ld~~~~~~~ 555 (662)
+. +..+..+++|+.|+|++|.++. +|.. ...++ +|+++++..+.+.
T Consensus 512 ~~--~~~~~~l~~L~~L~l~~N~l~~-~p~~------~~~l~~~L~~l~l~~N~~~ 558 (606)
T 3vq2_A 512 LD--SSHYNQLYSLSTLDCSFNRIET-SKGI------LQHFPKSLAFFNLTNNSVA 558 (606)
T ss_dssp EE--GGGTTTCTTCCEEECTTSCCCC-EESC------GGGSCTTCCEEECCSCCCC
T ss_pred cC--HHHccCCCcCCEEECCCCcCcc-cCHh------HhhhcccCcEEEccCCCcc
Confidence 74 6677888888899998888874 3321 33454 5888888877643
No 22
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.82 E-value=6.2e-20 Score=191.11 Aligned_cols=238 Identities=14% Similarity=0.170 Sum_probs=188.8
Q ss_pred CceeecCCccCCCcchhhhcCCCCCCCCcccCCCCCCCCccCCc----ccCCCCCceeeCCccccchhhhHHHhhhccCC
Q 035577 301 WDKLPSKHFKIKRIKEWVNDLQHCSPLEESDETSVSNDQVKRDP----KVLNGSTAVKVDGKVTAGMEAVTKYISSLSAS 376 (662)
Q Consensus 301 L~~L~l~~~si~~L~~~~~~L~~l~~L~~L~~l~ls~n~L~~~p----~~l~~L~~L~l~~~~~~~l~~l~~~l~~l~~s 376 (662)
++.++..++.++.++.. + ...|+. +.++.+.+..++ ..+.+|+.|++.++....+...+..+..++.
T Consensus 9 ~~~l~c~~~~l~~ip~~---~--~~~l~~---L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~- 79 (306)
T 2z66_A 9 GTEIRCNSKGLTSVPTG---I--PSSATR---LELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTS- 79 (306)
T ss_dssp TTEEECCSSCCSSCCSC---C--CTTCCE---EECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSC-
T ss_pred CCEEEcCCCCcccCCCC---C--CCCCCE---EECCCCccCccCHhHhhccccCCEEECCCCccCcccCcccccccccc-
Confidence 45778888888877742 1 234444 444555555554 3467889999998776655433444455554
Q ss_pred ccEEEccCCCCCCCCC-CCCCCCCCEEEccCCCCcccCC-CcCC--CCccEEEccCCCCCCCc--CCCCCCCCCEEeCcC
Q 035577 377 ATTVQLSNHGLVVIPF-LSAFVSLKVLNLSGNAIVRITA-GALP--RGLHILNLSKNNISTIE--GLRELTRLRVLDLSY 450 (662)
Q Consensus 377 L~~L~Ls~N~L~~lp~-l~~L~~L~~L~Ls~N~L~~l~~-~~~~--~~L~~L~Ls~N~L~~lp--~l~~L~~L~~LdLs~ 450 (662)
|++|+|++|.++.+|. +..+++|++|+|++|.++.++. ..+. ++|++|+|++|.++.+. .+..+++|++|+|++
T Consensus 80 L~~L~Ls~n~i~~l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~ 159 (306)
T 2z66_A 80 LKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAG 159 (306)
T ss_dssp CCEEECCSCSEEEEEEEEETCTTCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEEECTT
T ss_pred cCEEECCCCccccChhhcCCCCCCCEEECCCCcccccccchhhhhccCCCEEECCCCcCCccchhhcccCcCCCEEECCC
Confidence 9999999999998886 8899999999999999998875 3343 89999999999998653 588999999999999
Q ss_pred CCCcc--ccccccCCCCCcEEEcCCCCCCCc-c-cccCCCCCcEEECCCCccCccccchHhhhcCCCCcEEEccCCCCCC
Q 035577 451 NRILR--IGHGLASCSSLKELYLAGNKISEV-E-GLHRLLKLTVLDLRFNKISTAKCLGQLAANYNSLQAISLEGNPAQK 526 (662)
Q Consensus 451 N~Ls~--Lp~~l~~L~~L~~L~Ls~N~L~~l-~-~l~~L~~L~~LdLs~N~Ls~l~~l~~~l~~l~~L~~L~Ls~N~l~~ 526 (662)
|.++. +|..+..+++|++|+|++|.|+.+ + .+..+++|+.|+|++|.|+.++ +..+..+++|+.|+|++|++.+
T Consensus 160 n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~--~~~~~~l~~L~~L~L~~N~l~~ 237 (306)
T 2z66_A 160 NSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLD--TFPYKCLNSLQVLDYSLNHIMT 237 (306)
T ss_dssp CEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCSBCC--SGGGTTCTTCCEEECTTSCCCB
T ss_pred CccccccchhHHhhCcCCCEEECCCCCcCCcCHHHhcCCCCCCEEECCCCccCccC--hhhccCcccCCEeECCCCCCcc
Confidence 99985 788899999999999999999988 3 6889999999999999999885 4456889999999999999988
Q ss_pred CCChHHHHHHHHhhC-ccCceeecCCCCCC
Q 035577 527 NVGDEQLKKNLQSLL-PHLVYFNWQPMKAS 555 (662)
Q Consensus 527 ~~~~~~l~~~l~~~l-~~L~~Ld~~~~~~~ 555 (662)
..+.. ...+ ++|++|++..+.+.
T Consensus 238 ~~~~~------~~~~~~~L~~L~L~~N~~~ 261 (306)
T 2z66_A 238 SKKQE------LQHFPSSLAFLNLTQNDFA 261 (306)
T ss_dssp CSSSS------CCCCCTTCCEEECTTCCEE
T ss_pred cCHHH------HHhhhccCCEEEccCCCee
Confidence 65531 2334 48999999988764
No 23
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.82 E-value=3.3e-19 Score=202.63 Aligned_cols=234 Identities=18% Similarity=0.234 Sum_probs=109.8
Q ss_pred cccCCCCCccCCC--CCCCCCCceeecCCccCCCcchhhhcCCCCCCCCcccCCCCCCCCccCC----cccCCCCCceee
Q 035577 282 VMPDENSVKKLQG--ESLHEQWDKLPSKHFKIKRIKEWVNDLQHCSPLEESDETSVSNDQVKRD----PKVLNGSTAVKV 355 (662)
Q Consensus 282 L~ls~N~I~~L~~--~s~l~~L~~L~l~~~si~~L~~~~~~L~~l~~L~~L~~l~ls~n~L~~~----p~~l~~L~~L~l 355 (662)
++++.|.+..++. +..+++|+.|++.+|.++.++.. +..+..|+.| .++.+.+... ...+.+|+.|++
T Consensus 259 L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~lp~~---l~~l~~L~~L---~l~~n~l~~~~~~~~~~l~~L~~L~l 332 (606)
T 3t6q_A 259 INLQKHYFFNISSNTFHCFSGLQELDLTATHLSELPSG---LVGLSTLKKL---VLSANKFENLCQISASNFPSLTHLSI 332 (606)
T ss_dssp EECTTCCCSSCCTTTTTTCTTCSEEECTTSCCSCCCSS---CCSCTTCCEE---ECTTCCCSBGGGGCGGGCTTCSEEEC
T ss_pred EEeecCccCccCHHHhccccCCCEEeccCCccCCCChh---hcccccCCEE---ECccCCcCcCchhhhhccCcCCEEEC
Confidence 5555555555554 44555666666666655555432 2333333332 2233333222 122445555555
Q ss_pred CCcccc-chhhhHHHhhhccCCccEEEccCCCCCCC---CC-CCCCCCCCEEEccCCCCcccCCCcCC--CCccEEEccC
Q 035577 356 DGKVTA-GMEAVTKYISSLSASATTVQLSNHGLVVI---PF-LSAFVSLKVLNLSGNAIVRITAGALP--RGLHILNLSK 428 (662)
Q Consensus 356 ~~~~~~-~l~~l~~~l~~l~~sL~~L~Ls~N~L~~l---p~-l~~L~~L~~L~Ls~N~L~~l~~~~~~--~~L~~L~Ls~ 428 (662)
.++... .+. ...+..++. |+.|++++|.++.+ +. +..+++|++|+|++|.+..+++..+. ++|++|+|++
T Consensus 333 ~~n~~~~~~~--~~~~~~l~~-L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~ 409 (606)
T 3t6q_A 333 KGNTKRLELG--TGCLENLEN-LRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAF 409 (606)
T ss_dssp CSCSSCCBCC--SSTTTTCTT-CCEEECCSSCCCEEEESTTTTTTCTTCCEEECCSCSCEEECTTTTTTCTTCSEEECTT
T ss_pred CCCCcccccc--hhhhhccCc-CCEEECCCCccccccCcchhcccCCCCCEEECCCCcCCcCCHHHhcCCccCCeEECCC
Confidence 543221 110 011222222 55555555555543 21 55555555555555555554444433 4555555555
Q ss_pred CCCCCCc---CCCCCCCCCEEeCcCCCCccc-cccccCCCCCcEEEcCCCCCCCc-----ccccCCCCCcEEECCCCccC
Q 035577 429 NNISTIE---GLRELTRLRVLDLSYNRILRI-GHGLASCSSLKELYLAGNKISEV-----EGLHRLLKLTVLDLRFNKIS 499 (662)
Q Consensus 429 N~L~~lp---~l~~L~~L~~LdLs~N~Ls~L-p~~l~~L~~L~~L~Ls~N~L~~l-----~~l~~L~~L~~LdLs~N~Ls 499 (662)
|.++... .+..+++|++|++++|.++.+ |..+..+++|++|+|++|.+++. ..+..+++|+.|+|++|.++
T Consensus 410 n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~ 489 (606)
T 3t6q_A 410 TRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLS 489 (606)
T ss_dssp CCEECCTTCCTTTTCTTCCEEECTTCCCBTTCTTTTTTCTTCCEEECTTCBCGGGEECSSCGGGGCTTCCEEECTTSCCC
T ss_pred CcCCCcccchhhhCcccCCEEECCCCccCCcCHHHHhCCCCCCEEECCCCCCCccccccchhhccCCCccEEECCCCccC
Confidence 5554331 245555555555555555533 23345555555555555555431 13445555555555555555
Q ss_pred ccccchHhhhcCCCCcEEEccCCCCCC
Q 035577 500 TAKCLGQLAANYNSLQAISLEGNPAQK 526 (662)
Q Consensus 500 ~l~~l~~~l~~l~~L~~L~Ls~N~l~~ 526 (662)
++. +..+..+++|+.|+|++|.+++
T Consensus 490 ~~~--~~~~~~l~~L~~L~Ls~N~l~~ 514 (606)
T 3t6q_A 490 SID--QHAFTSLKMMNHVDLSHNRLTS 514 (606)
T ss_dssp EEC--TTTTTTCTTCCEEECCSSCCCG
T ss_pred ccC--hhhhccccCCCEEECCCCccCc
Confidence 442 3344455555555555555544
No 24
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.82 E-value=1.5e-19 Score=214.93 Aligned_cols=262 Identities=17% Similarity=0.145 Sum_probs=160.4
Q ss_pred CcccCcccccccCCCC-CccCCC-CCCCCCCceeecCCcc-CCC--cchhhhcCC-CCCCCCcccCCCCCCCCccCCcc-
Q 035577 273 NYSALAKDWVMPDENS-VKKLQG-ESLHEQWDKLPSKHFK-IKR--IKEWVNDLQ-HCSPLEESDETSVSNDQVKRDPK- 345 (662)
Q Consensus 273 ~l~~L~~~~L~ls~N~-I~~L~~-~s~l~~L~~L~l~~~s-i~~--L~~~~~~L~-~l~~L~~L~~l~ls~n~L~~~p~- 345 (662)
.+..|.. |+++.|. ...++. +..+++|+.|++.+|. +.. +|..+..+. .+..+..|..+.++.+.+..+|.
T Consensus 489 ~L~~L~~--L~Ls~N~l~~~iP~~l~~L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~~ip~~ 566 (876)
T 4ecn_A 489 NLKDLTD--VELYNCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLEEFPAS 566 (876)
T ss_dssp GCTTCCE--EEEESCTTCCSCCGGGGGCSSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCCBCCCH
T ss_pred cCCCCCE--EECcCCCCCccChHHHhCCCCCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCCccCCh
Confidence 4555665 7777775 445554 6778889999999887 765 665444333 33344444445566666666655
Q ss_pred ----cCCCCCceeeCCccccchhhhHHHhhhccCCccEEEccCCCCCCCCC-CCCCCC-CCEEEccCCCCcccCCCcCC-
Q 035577 346 ----VLNGSTAVKVDGKVTAGMEAVTKYISSLSASATTVQLSNHGLVVIPF-LSAFVS-LKVLNLSGNAIVRITAGALP- 418 (662)
Q Consensus 346 ----~l~~L~~L~l~~~~~~~l~~l~~~l~~l~~sL~~L~Ls~N~L~~lp~-l~~L~~-L~~L~Ls~N~L~~l~~~~~~- 418 (662)
.+.+|+.|++.++.+..+. .+..++. |+.|+|++|.|+.+|. +..+++ |++|+|++|.|+.+|.....
T Consensus 567 ~~l~~L~~L~~L~Ls~N~l~~lp----~~~~L~~-L~~L~Ls~N~l~~lp~~l~~l~~~L~~L~Ls~N~L~~lp~~~~~~ 641 (876)
T 4ecn_A 567 ASLQKMVKLGLLDCVHNKVRHLE----AFGTNVK-LTDLKLDYNQIEEIPEDFCAFTDQVEGLGFSHNKLKYIPNIFNAK 641 (876)
T ss_dssp HHHTTCTTCCEEECTTSCCCBCC----CCCTTSE-ESEEECCSSCCSCCCTTSCEECTTCCEEECCSSCCCSCCSCCCTT
T ss_pred hhhhcCCCCCEEECCCCCcccch----hhcCCCc-ceEEECcCCccccchHHHhhccccCCEEECcCCCCCcCchhhhcc
Confidence 3667778888776555333 3444544 8888888888888875 788887 88888888888877643222
Q ss_pred --CCccEEEccCCCCCCC-cCCC------CCCCCCEEeCcCCCCccccccc-cCCCCCcEEEcCCCCCCCccc-cc----
Q 035577 419 --RGLHILNLSKNNISTI-EGLR------ELTRLRVLDLSYNRILRIGHGL-ASCSSLKELYLAGNKISEVEG-LH---- 483 (662)
Q Consensus 419 --~~L~~L~Ls~N~L~~l-p~l~------~L~~L~~LdLs~N~Ls~Lp~~l-~~L~~L~~L~Ls~N~L~~l~~-l~---- 483 (662)
++|+.|+|++|.|++. |.+. .+++|+.|+|++|.|+.+|..+ ..+++|+.|+|++|.|+.+|. +.
T Consensus 642 ~~~~L~~L~Ls~N~l~g~ip~l~~~l~~~~~~~L~~L~Ls~N~L~~lp~~~~~~l~~L~~L~Ls~N~L~~ip~~~~~~~~ 721 (876)
T 4ecn_A 642 SVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQKFPTELFATGSPISTIILSNNLMTSIPENSLKPKD 721 (876)
T ss_dssp CSSCEEEEECCSSCTTTTSSSCSSCTTTCCCCCEEEEECCSSCCCSCCHHHHHTTCCCSEEECCSCCCSCCCTTSSSCTT
T ss_pred ccCCCCEEECcCCcCCCccccchhhhccccCCCcCEEEccCCcCCccCHHHHccCCCCCEEECCCCcCCccChHHhcccc
Confidence 2377777777777643 2221 3346666666666666666553 356666666666666665531 11
Q ss_pred ----CCCCCcEEECCCCccCccccchHhhh--cCCCCcEEEccCCCCCCCCChHHHHHHHHhhCccCceeecCC
Q 035577 484 ----RLLKLTVLDLRFNKISTAKCLGQLAA--NYNSLQAISLEGNPAQKNVGDEQLKKNLQSLLPHLVYFNWQP 551 (662)
Q Consensus 484 ----~L~~L~~LdLs~N~Ls~l~~l~~~l~--~l~~L~~L~Ls~N~l~~~~~~~~l~~~l~~~l~~L~~Ld~~~ 551 (662)
++++|+.|+|++|+|+.+ |..+. .+++|+.|+|++|.+.+ +|.. ...+++|+.|++..
T Consensus 722 ~~l~nl~~L~~L~Ls~N~L~~l---p~~l~~~~l~~L~~L~Ls~N~L~~-lp~~------l~~L~~L~~L~Ls~ 785 (876)
T 4ecn_A 722 GNYKNTYLLTTIDLRFNKLTSL---SDDFRATTLPYLSNMDVSYNCFSS-FPTQ------PLNSSQLKAFGIRH 785 (876)
T ss_dssp SCCTTGGGCCEEECCSSCCCCC---CGGGSTTTCTTCCEEECCSSCCSS-CCCG------GGGCTTCCEEECCC
T ss_pred ccccccCCccEEECCCCCCccc---hHHhhhccCCCcCEEEeCCCCCCc-cchh------hhcCCCCCEEECCC
Confidence 122666666666666644 33333 56666666666666665 2321 23455566665543
No 25
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.82 E-value=8.5e-20 Score=205.29 Aligned_cols=253 Identities=14% Similarity=0.163 Sum_probs=201.5
Q ss_pred cccCcccccccCCCCCccCCC-CCCCCCCceeecCCccCCCcchhhhcCCCCCCCCcccCCCCCCCCccCCc--ccCCCC
Q 035577 274 YSALAKDWVMPDENSVKKLQG-ESLHEQWDKLPSKHFKIKRIKEWVNDLQHCSPLEESDETSVSNDQVKRDP--KVLNGS 350 (662)
Q Consensus 274 l~~L~~~~L~ls~N~I~~L~~-~s~l~~L~~L~l~~~si~~L~~~~~~L~~l~~L~~L~~l~ls~n~L~~~p--~~l~~L 350 (662)
+..+.. +++..|.+..++. +..+ +|+.|++.+|.+..++. ..+..|+.+.. ..+.+.... ..+.+|
T Consensus 281 l~~L~~--L~l~~~~l~~l~~~~~~~-~L~~L~l~~n~~~~l~~-----~~l~~L~~L~l---~~n~~~~~~~~~~~~~L 349 (570)
T 2z63_A 281 LTNVSS--FSLVSVTIERVKDFSYNF-GWQHLELVNCKFGQFPT-----LKLKSLKRLTF---TSNKGGNAFSEVDLPSL 349 (570)
T ss_dssp GTTCSE--EEEESCEECSCCBCCSCC-CCSEEEEESCBCSSCCB-----CBCSSCCEEEE---ESCBSCCBCCCCBCTTC
T ss_pred cCcccE--EEecCccchhhhhhhccC-CccEEeeccCcccccCc-----ccccccCEEeC---cCCccccccccccCCCC
Confidence 455555 7778888888877 4445 88999999888887764 23444444333 333332211 347889
Q ss_pred CceeeCCccccchhhhHHHhhhccCCccEEEccCCCCCCCCC-CCCCCCCCEEEccCCCCcccCC-CcCC--CCccEEEc
Q 035577 351 TAVKVDGKVTAGMEAVTKYISSLSASATTVQLSNHGLVVIPF-LSAFVSLKVLNLSGNAIVRITA-GALP--RGLHILNL 426 (662)
Q Consensus 351 ~~L~l~~~~~~~l~~l~~~l~~l~~sL~~L~Ls~N~L~~lp~-l~~L~~L~~L~Ls~N~L~~l~~-~~~~--~~L~~L~L 426 (662)
+.|++.++....+...+..+..++. |+.|+|++|.++.++. +..+++|++|+|++|.+..++. ..+. ++|++|+|
T Consensus 350 ~~L~l~~n~l~~~~~~~~~~~~~~~-L~~L~l~~n~l~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l 428 (570)
T 2z63_A 350 EFLDLSRNGLSFKGCCSQSDFGTTS-LKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDI 428 (570)
T ss_dssp CEEECCSSCCBEEEEEEHHHHTCSC-CCEEECCSCSEEEEEEEEETCTTCCEEECTTSEEESCTTSCTTTTCTTCCEEEC
T ss_pred CEEeCcCCccCccccccccccccCc-cCEEECCCCccccccccccccCCCCEEEccCCccccccchhhhhcCCCCCEEeC
Confidence 9999998776655433455666665 9999999999998876 8899999999999999987754 3333 89999999
Q ss_pred cCCCCCCC-c-CCCCCCCCCEEeCcCCCCc--cccccccCCCCCcEEEcCCCCCCCc-c-cccCCCCCcEEECCCCccCc
Q 035577 427 SKNNISTI-E-GLRELTRLRVLDLSYNRIL--RIGHGLASCSSLKELYLAGNKISEV-E-GLHRLLKLTVLDLRFNKIST 500 (662)
Q Consensus 427 s~N~L~~l-p-~l~~L~~L~~LdLs~N~Ls--~Lp~~l~~L~~L~~L~Ls~N~L~~l-~-~l~~L~~L~~LdLs~N~Ls~ 500 (662)
++|.+... + .+..+++|++|+|++|.++ .+|..+..+++|++|+|++|+++++ + .+..+++|+.|+|++|+|++
T Consensus 429 ~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~ 508 (570)
T 2z63_A 429 SHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLKS 508 (570)
T ss_dssp TTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSC
T ss_pred cCCcccccchhhhhcCCcCcEEECcCCcCccccchhhhhcccCCCEEECCCCccccCChhhhhcccCCCEEeCCCCcCCC
Confidence 99999875 3 6889999999999999997 6888899999999999999999988 3 68899999999999999999
Q ss_pred cccchHhhhcCCCCcEEEccCCCCCCCCChHHHH-HHHHhh
Q 035577 501 AKCLGQLAANYNSLQAISLEGNPAQKNVGDEQLK-KNLQSL 540 (662)
Q Consensus 501 l~~l~~~l~~l~~L~~L~Ls~N~l~~~~~~~~l~-~~l~~~ 540 (662)
++ +..+..+++|+.|+|++|++.|.|+..++. .|+...
T Consensus 509 ~~--~~~~~~l~~L~~L~l~~N~~~~~~~~~~~~~~wl~~~ 547 (570)
T 2z63_A 509 VP--DGIFDRLTSLQKIWLHTNPWDCSCPRIDYLSRWLNKN 547 (570)
T ss_dssp CC--TTTTTTCTTCCEEECCSSCBCCCTTTTHHHHHHHHHT
T ss_pred CC--HHHhhcccCCcEEEecCCcccCCCcchHHHHHHHHhc
Confidence 85 567789999999999999999999987776 777654
No 26
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.82 E-value=3.4e-19 Score=197.57 Aligned_cols=253 Identities=17% Similarity=0.200 Sum_probs=125.1
Q ss_pred cccCCCCCccCCCCCCCCCCceeecCCccCCCcchhhhcCCCCCCCCcccCCCCCCCCccCCc-ccCCCCCceeeCCccc
Q 035577 282 VMPDENSVKKLQGESLHEQWDKLPSKHFKIKRIKEWVNDLQHCSPLEESDETSVSNDQVKRDP-KVLNGSTAVKVDGKVT 360 (662)
Q Consensus 282 L~ls~N~I~~L~~~s~l~~L~~L~l~~~si~~L~~~~~~L~~l~~L~~L~~l~ls~n~L~~~p-~~l~~L~~L~l~~~~~ 360 (662)
++++.|.++.++ +..+.+|+.|++.+|.++.++ +..+..|+. ++++.+.+..++ ..+.+|+.|++.++..
T Consensus 69 L~Ls~n~l~~~~-~~~l~~L~~L~Ls~N~l~~~~-----~~~l~~L~~---L~L~~N~l~~l~~~~l~~L~~L~l~~N~l 139 (457)
T 3bz5_A 69 LICTSNNITTLD-LSQNTNLTYLACDSNKLTNLD-----VTPLTKLTY---LNCDTNKLTKLDVSQNPLLTYLNCARNTL 139 (457)
T ss_dssp EECCSSCCSCCC-CTTCTTCSEEECCSSCCSCCC-----CTTCTTCCE---EECCSSCCSCCCCTTCTTCCEEECTTSCC
T ss_pred EEccCCcCCeEc-cccCCCCCEEECcCCCCceee-----cCCCCcCCE---EECCCCcCCeecCCCCCcCCEEECCCCcc
Confidence 555555555553 445555555555555554442 222333332 223333333322 2244455555555443
Q ss_pred cchhhhHHHhhhccCCccEEEccCC-CCCCCCCCCCCCCCCEEEccCCCCcccCCCcCCCCccEEEccCCCCCCCcCCCC
Q 035577 361 AGMEAVTKYISSLSASATTVQLSNH-GLVVIPFLSAFVSLKVLNLSGNAIVRITAGALPRGLHILNLSKNNISTIEGLRE 439 (662)
Q Consensus 361 ~~l~~l~~~l~~l~~sL~~L~Ls~N-~L~~lp~l~~L~~L~~L~Ls~N~L~~l~~~~~~~~L~~L~Ls~N~L~~lp~l~~ 439 (662)
..+. +..++. |+.|++++| .+..+ .+..+++|++|+|++|.|+.++.. ..++|+.|++++|.|+.++ +..
T Consensus 140 ~~l~-----l~~l~~-L~~L~l~~n~~~~~~-~~~~l~~L~~L~ls~n~l~~l~l~-~l~~L~~L~l~~N~l~~~~-l~~ 210 (457)
T 3bz5_A 140 TEID-----VSHNTQ-LTELDCHLNKKITKL-DVTPQTQLTTLDCSFNKITELDVS-QNKLLNRLNCDTNNITKLD-LNQ 210 (457)
T ss_dssp SCCC-----CTTCTT-CCEEECTTCSCCCCC-CCTTCTTCCEEECCSSCCCCCCCT-TCTTCCEEECCSSCCSCCC-CTT
T ss_pred ceec-----cccCCc-CCEEECCCCCccccc-ccccCCcCCEEECCCCccceeccc-cCCCCCEEECcCCcCCeec-ccc
Confidence 3321 222322 555555555 33333 245555666666666666555411 1145666666666666553 555
Q ss_pred CCCCCEEeCcCCCCccccccccCCCCCcEEEcCCCCCCCcccccCCCCCcEEECCCCccCccc--------cchHhhhcC
Q 035577 440 LTRLRVLDLSYNRILRIGHGLASCSSLKELYLAGNKISEVEGLHRLLKLTVLDLRFNKISTAK--------CLGQLAANY 511 (662)
Q Consensus 440 L~~L~~LdLs~N~Ls~Lp~~l~~L~~L~~L~Ls~N~L~~l~~l~~L~~L~~LdLs~N~Ls~l~--------~l~~~l~~l 511 (662)
+++|++|++++|.|+.+| ++.+++|+.|++++|+|++++ +..+++|+.|++++|.++.+. .++ +..+
T Consensus 211 l~~L~~L~Ls~N~l~~ip--~~~l~~L~~L~l~~N~l~~~~-~~~l~~L~~L~l~~n~L~~L~l~~n~~~~~~~--~~~l 285 (457)
T 3bz5_A 211 NIQLTFLDCSSNKLTEID--VTPLTQLTYFDCSVNPLTELD-VSTLSKLTTLHCIQTDLLEIDLTHNTQLIYFQ--AEGC 285 (457)
T ss_dssp CTTCSEEECCSSCCSCCC--CTTCTTCSEEECCSSCCSCCC-CTTCTTCCEEECTTCCCSCCCCTTCTTCCEEE--CTTC
T ss_pred CCCCCEEECcCCcccccC--ccccCCCCEEEeeCCcCCCcC-HHHCCCCCEEeccCCCCCEEECCCCccCCccc--cccc
Confidence 666666666666666655 555666666666666666554 334444444444444444321 111 2345
Q ss_pred CCCcEEEccCCCCCCCCChH--HHHHHHHhhCccCceeecCCCCCCcc
Q 035577 512 NSLQAISLEGNPAQKNVGDE--QLKKNLQSLLPHLVYFNWQPMKASTL 557 (662)
Q Consensus 512 ~~L~~L~Ls~N~l~~~~~~~--~l~~~l~~~l~~L~~Ld~~~~~~~~l 557 (662)
++|+.|+|++|++.+.++.. .+...-...+++|++|++..+.+..+
T Consensus 286 ~~L~~L~Ls~n~~l~~l~~~~~~L~~L~l~~~~~L~~L~L~~N~l~~l 333 (457)
T 3bz5_A 286 RKIKELDVTHNTQLYLLDCQAAGITELDLSQNPKLVYLYLNNTELTEL 333 (457)
T ss_dssp TTCCCCCCTTCTTCCEEECTTCCCSCCCCTTCTTCCEEECTTCCCSCC
T ss_pred ccCCEEECCCCcccceeccCCCcceEechhhcccCCEEECCCCccccc
Confidence 66777777777655433210 00000123456777777777776665
No 27
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.82 E-value=3e-19 Score=181.37 Aligned_cols=167 Identities=24% Similarity=0.330 Sum_probs=149.0
Q ss_pred CCccEEEccCCCCCCCCC--CCCCCCCCEEEccCCCCcccCCCcCC--CCccEEEccCCCCCCCc--CCCCCCCCCEEeC
Q 035577 375 ASATTVQLSNHGLVVIPF--LSAFVSLKVLNLSGNAIVRITAGALP--RGLHILNLSKNNISTIE--GLRELTRLRVLDL 448 (662)
Q Consensus 375 ~sL~~L~Ls~N~L~~lp~--l~~L~~L~~L~Ls~N~L~~l~~~~~~--~~L~~L~Ls~N~L~~lp--~l~~L~~L~~LdL 448 (662)
..++.|+|++|.|+.++. |..+++|++|+|++|.|+.+++..|. ++|++|+|++|+|+.++ .|..+++|++|+|
T Consensus 35 ~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 114 (251)
T 3m19_A 35 ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLASLPLGVFDHLTQLDKLYL 114 (251)
T ss_dssp TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEEC
T ss_pred CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEECCCCcccccChhHhcccCCCCEEEc
Confidence 458999999999998864 89999999999999999999887766 89999999999999986 5789999999999
Q ss_pred cCCCCcccccc-ccCCCCCcEEEcCCCCCCCcc--cccCCCCCcEEECCCCccCccccchHhhhcCCCCcEEEccCCCCC
Q 035577 449 SYNRILRIGHG-LASCSSLKELYLAGNKISEVE--GLHRLLKLTVLDLRFNKISTAKCLGQLAANYNSLQAISLEGNPAQ 525 (662)
Q Consensus 449 s~N~Ls~Lp~~-l~~L~~L~~L~Ls~N~L~~l~--~l~~L~~L~~LdLs~N~Ls~l~~l~~~l~~l~~L~~L~Ls~N~l~ 525 (662)
++|.|+.+|.. |..+++|++|+|++|+|+.++ .+..+++|+.|+|++|+|+.++ +..+..+++|+.|+|++|+|.
T Consensus 115 ~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~--~~~~~~l~~L~~L~l~~N~~~ 192 (251)
T 3m19_A 115 GGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSVP--HGAFDRLGKLQTITLFGNQFD 192 (251)
T ss_dssp CSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCC--TTTTTTCTTCCEEECCSCCBC
T ss_pred CCCcCCCcChhHhccCCcccEEECcCCcCCccCHHHcCcCcCCCEEECCCCcCCccC--HHHHhCCCCCCEEEeeCCcee
Confidence 99999999876 789999999999999999985 5889999999999999999885 557788999999999999999
Q ss_pred CC-CChHHHHHHHHhhCcc
Q 035577 526 KN-VGDEQLKKNLQSLLPH 543 (662)
Q Consensus 526 ~~-~~~~~l~~~l~~~l~~ 543 (662)
|. |...++..|+......
T Consensus 193 c~~~~~~~l~~~~~~~~~~ 211 (251)
T 3m19_A 193 CSRCEILYLSQWIRENSNK 211 (251)
T ss_dssp TTSTTHHHHHHHHHHSGGG
T ss_pred CCccccHHHHHHHHhcccc
Confidence 98 7777777887755433
No 28
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.82 E-value=1.7e-19 Score=214.56 Aligned_cols=255 Identities=15% Similarity=0.191 Sum_probs=130.9
Q ss_pred cccCCCCCccCCC---CCCCCCCceeecCCccCCCcchhhhcCCCCCCCCcccCCCCCCCCccCCccc---CCC-CCcee
Q 035577 282 VMPDENSVKKLQG---ESLHEQWDKLPSKHFKIKRIKEWVNDLQHCSPLEESDETSVSNDQVKRDPKV---LNG-STAVK 354 (662)
Q Consensus 282 L~ls~N~I~~L~~---~s~l~~L~~L~l~~~si~~L~~~~~~L~~l~~L~~L~~l~ls~n~L~~~p~~---l~~-L~~L~ 354 (662)
++++.|.+..++. +..+.+|+.|++.+|.+..++ .+..+..|+ .+.++.+.+..+|.. +.. |+.|+
T Consensus 553 L~Ls~N~L~~ip~~~~l~~L~~L~~L~Ls~N~l~~lp----~~~~L~~L~---~L~Ls~N~l~~lp~~l~~l~~~L~~L~ 625 (876)
T 4ecn_A 553 FYMGYNNLEEFPASASLQKMVKLGLLDCVHNKVRHLE----AFGTNVKLT---DLKLDYNQIEEIPEDFCAFTDQVEGLG 625 (876)
T ss_dssp EECCSSCCCBCCCHHHHTTCTTCCEEECTTSCCCBCC----CCCTTSEES---EEECCSSCCSCCCTTSCEECTTCCEEE
T ss_pred EEeeCCcCCccCChhhhhcCCCCCEEECCCCCcccch----hhcCCCcce---EEECcCCccccchHHHhhccccCCEEE
Confidence 5556666655554 455556666666666555444 122222222 233334444333322 334 55555
Q ss_pred eCCccccchhhhHHHhhhcc-CCccEEEccCCCCCCC-CCC----C--CCCCCCEEEccCCCCcccCCCcCC--CCccEE
Q 035577 355 VDGKVTAGMEAVTKYISSLS-ASATTVQLSNHGLVVI-PFL----S--AFVSLKVLNLSGNAIVRITAGALP--RGLHIL 424 (662)
Q Consensus 355 l~~~~~~~l~~l~~~l~~l~-~sL~~L~Ls~N~L~~l-p~l----~--~L~~L~~L~Ls~N~L~~l~~~~~~--~~L~~L 424 (662)
+.++.+..+ +..+..+. ..|+.|+|++|.|... |.+ . .+++|+.|+|++|.|+.++...+. ++|+.|
T Consensus 626 Ls~N~L~~l---p~~~~~~~~~~L~~L~Ls~N~l~g~ip~l~~~l~~~~~~~L~~L~Ls~N~L~~lp~~~~~~l~~L~~L 702 (876)
T 4ecn_A 626 FSHNKLKYI---PNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQKFPTELFATGSPISTI 702 (876)
T ss_dssp CCSSCCCSC---CSCCCTTCSSCEEEEECCSSCTTTTSSSCSSCTTTCCCCCEEEEECCSSCCCSCCHHHHHTTCCCSEE
T ss_pred CcCCCCCcC---chhhhccccCCCCEEECcCCcCCCccccchhhhccccCCCcCEEEccCCcCCccCHHHHccCCCCCEE
Confidence 555443322 22222221 1255666666665422 211 1 233566666666666655544331 566666
Q ss_pred EccCCCCCCCcC--CC-------CCCCCCEEeCcCCCCcccccccc--CCCCCcEEEcCCCCCCCcc-cccCCCCCcEEE
Q 035577 425 NLSKNNISTIEG--LR-------ELTRLRVLDLSYNRILRIGHGLA--SCSSLKELYLAGNKISEVE-GLHRLLKLTVLD 492 (662)
Q Consensus 425 ~Ls~N~L~~lp~--l~-------~L~~L~~LdLs~N~Ls~Lp~~l~--~L~~L~~L~Ls~N~L~~l~-~l~~L~~L~~Ld 492 (662)
+|++|+|+.+|. +. ++++|+.|+|++|.|+.+|..+. .+++|+.|+|++|.|+++| .+..+++|+.|+
T Consensus 703 ~Ls~N~L~~ip~~~~~~~~~~l~nl~~L~~L~Ls~N~L~~lp~~l~~~~l~~L~~L~Ls~N~L~~lp~~l~~L~~L~~L~ 782 (876)
T 4ecn_A 703 ILSNNLMTSIPENSLKPKDGNYKNTYLLTTIDLRFNKLTSLSDDFRATTLPYLSNMDVSYNCFSSFPTQPLNSSQLKAFG 782 (876)
T ss_dssp ECCSCCCSCCCTTSSSCTTSCCTTGGGCCEEECCSSCCCCCCGGGSTTTCTTCCEEECCSSCCSSCCCGGGGCTTCCEEE
T ss_pred ECCCCcCCccChHHhccccccccccCCccEEECCCCCCccchHHhhhccCCCcCEEEeCCCCCCccchhhhcCCCCCEEE
Confidence 666666665542 11 12256666666666666665554 6666666666666666654 455666666666
Q ss_pred CCC------CccCccccchHhhhcCCCCcEEEccCCCCCCCCChHHHHHHHHhhCccCceeecCCCCCCcc
Q 035577 493 LRF------NKISTAKCLGQLAANYNSLQAISLEGNPAQKNVGDEQLKKNLQSLLPHLVYFNWQPMKASTL 557 (662)
Q Consensus 493 Ls~------N~Ls~l~~l~~~l~~l~~L~~L~Ls~N~l~~~~~~~~l~~~l~~~l~~L~~Ld~~~~~~~~l 557 (662)
|++ |.+... +|..+..+++|+.|+|++|.+ +.+|.. ..++|+.|+++.+.+..+
T Consensus 783 Ls~N~~ls~N~l~~~--ip~~l~~L~~L~~L~Ls~N~L-~~Ip~~--------l~~~L~~LdLs~N~l~~i 842 (876)
T 4ecn_A 783 IRHQRDAEGNRILRQ--WPTGITTCPSLIQLQIGSNDI-RKVDEK--------LTPQLYILDIADNPNISI 842 (876)
T ss_dssp CCCCBCTTCCBCCCC--CCTTGGGCSSCCEEECCSSCC-CBCCSC--------CCSSSCEEECCSCTTCEE
T ss_pred CCCCCCccccccccc--ChHHHhcCCCCCEEECCCCCC-CccCHh--------hcCCCCEEECCCCCCCcc
Confidence 654 444432 244555666666666666666 444432 124666666666655443
No 29
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.82 E-value=3e-19 Score=188.09 Aligned_cols=240 Identities=20% Similarity=0.252 Sum_probs=190.6
Q ss_pred cCcccCcccccccCCCCCccCCC--CCCCCCCceeecCCccCCCcchhhhcCCCCCCCCcccCCCCCCCCccCCc----c
Q 035577 272 CNYSALAKDWVMPDENSVKKLQG--ESLHEQWDKLPSKHFKIKRIKEWVNDLQHCSPLEESDETSVSNDQVKRDP----K 345 (662)
Q Consensus 272 ~~l~~L~~~~L~ls~N~I~~L~~--~s~l~~L~~L~l~~~si~~L~~~~~~L~~l~~L~~L~~l~ls~n~L~~~p----~ 345 (662)
..+..|.. ++++.|.+..+.. +..+.+|+.|++.+|.++.++.. + +..|+. +.++.+.+...+ .
T Consensus 73 ~~l~~L~~--L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~l~~~---~--~~~L~~---L~l~~n~l~~~~~~~~~ 142 (330)
T 1xku_A 73 KNLKNLHT--LILINNKISKISPGAFAPLVKLERLYLSKNQLKELPEK---M--PKTLQE---LRVHENEITKVRKSVFN 142 (330)
T ss_dssp TTCTTCCE--EECCSSCCCCBCTTTTTTCTTCCEEECCSSCCSBCCSS---C--CTTCCE---EECCSSCCCBBCHHHHT
T ss_pred ccCCCCCE--EECCCCcCCeeCHHHhcCCCCCCEEECCCCcCCccChh---h--cccccE---EECCCCcccccCHhHhc
Confidence 44566776 8999999999844 78899999999999999887743 1 234444 445666665554 3
Q ss_pred cCCCCCceeeCCccccchhhhHHHhhhccCCccEEEccCCCCCCCCCCCCCCCCCEEEccCCCCcccCCCcCC--CCccE
Q 035577 346 VLNGSTAVKVDGKVTAGMEAVTKYISSLSASATTVQLSNHGLVVIPFLSAFVSLKVLNLSGNAIVRITAGALP--RGLHI 423 (662)
Q Consensus 346 ~l~~L~~L~l~~~~~~~l~~l~~~l~~l~~sL~~L~Ls~N~L~~lp~l~~L~~L~~L~Ls~N~L~~l~~~~~~--~~L~~ 423 (662)
.+..|+.|++.++........+..+..++. |+.|++++|.++.+|.. ..++|++|+|++|.|+.++...+. ++|++
T Consensus 143 ~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~-L~~L~l~~n~l~~l~~~-~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~ 220 (330)
T 1xku_A 143 GLNQMIVVELGTNPLKSSGIENGAFQGMKK-LSYIRIADTNITTIPQG-LPPSLTELHLDGNKITKVDAASLKGLNNLAK 220 (330)
T ss_dssp TCTTCCEEECCSSCCCGGGBCTTGGGGCTT-CCEEECCSSCCCSCCSS-CCTTCSEEECTTSCCCEECTGGGTTCTTCCE
T ss_pred CCccccEEECCCCcCCccCcChhhccCCCC-cCEEECCCCccccCCcc-ccccCCEEECCCCcCCccCHHHhcCCCCCCE
Confidence 378889999998776554444455666665 99999999999999862 238999999999999988766665 79999
Q ss_pred EEccCCCCCCCc--CCCCCCCCCEEeCcCCCCccccccccCCCCCcEEEcCCCCCCCcc--ccc------CCCCCcEEEC
Q 035577 424 LNLSKNNISTIE--GLRELTRLRVLDLSYNRILRIGHGLASCSSLKELYLAGNKISEVE--GLH------RLLKLTVLDL 493 (662)
Q Consensus 424 L~Ls~N~L~~lp--~l~~L~~L~~LdLs~N~Ls~Lp~~l~~L~~L~~L~Ls~N~L~~l~--~l~------~L~~L~~LdL 493 (662)
|+|++|.|+.++ .+..+++|++|+|++|.|+.+|..+..+++|++|+|++|.|+.++ .+. ....|+.|++
T Consensus 221 L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~lp~~l~~l~~L~~L~l~~N~i~~~~~~~f~~~~~~~~~~~l~~l~l 300 (330)
T 1xku_A 221 LGLSFNSISAVDNGSLANTPHLRELHLNNNKLVKVPGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSL 300 (330)
T ss_dssp EECCSSCCCEECTTTGGGSTTCCEEECCSSCCSSCCTTTTTCSSCCEEECCSSCCCCCCTTSSSCSSCCTTSCCCSEEEC
T ss_pred EECCCCcCceeChhhccCCCCCCEEECCCCcCccCChhhccCCCcCEEECCCCcCCccChhhcCCcccccccccccceEe
Confidence 999999999875 588999999999999999999999999999999999999999884 332 2478999999
Q ss_pred CCCccCccccchHhhhcCCCCcEEEccCCC
Q 035577 494 RFNKISTAKCLGQLAANYNSLQAISLEGNP 523 (662)
Q Consensus 494 s~N~Ls~l~~l~~~l~~l~~L~~L~Ls~N~ 523 (662)
++|.+......+..+..+..|+.++|++|+
T Consensus 301 ~~N~~~~~~i~~~~f~~~~~l~~l~L~~N~ 330 (330)
T 1xku_A 301 FSNPVQYWEIQPSTFRCVYVRAAVQLGNYK 330 (330)
T ss_dssp CSSSSCGGGSCGGGGTTCCCGGGEEC----
T ss_pred ecCcccccccCccccccccceeEEEecccC
Confidence 999998754446778889999999999984
No 30
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.82 E-value=6e-20 Score=208.73 Aligned_cols=250 Identities=16% Similarity=0.120 Sum_probs=199.2
Q ss_pred CcccCcccccccCCCCCccCCCCCCCCCCceeecCCccCCCcchhhhcCCCCCCCCcccCCCCCCCCccCC---c---cc
Q 035577 273 NYSALAKDWVMPDENSVKKLQGESLHEQWDKLPSKHFKIKRIKEWVNDLQHCSPLEESDETSVSNDQVKRD---P---KV 346 (662)
Q Consensus 273 ~l~~L~~~~L~ls~N~I~~L~~~s~l~~L~~L~l~~~si~~L~~~~~~L~~l~~L~~L~~l~ls~n~L~~~---p---~~ 346 (662)
.+..+.. +.+..|.+..++.+ .+++|+.|++.+|....-. .+..+..|+. ++++.+.+... + ..
T Consensus 305 ~~~~L~~--L~l~~n~l~~lp~~-~l~~L~~L~l~~n~~~~~~----~~~~l~~L~~---L~ls~n~l~~~~~~~~~~~~ 374 (606)
T 3vq2_A 305 KHFKWQS--LSIIRCQLKQFPTL-DLPFLKSLTLTMNKGSISF----KKVALPSLSY---LDLSRNALSFSGCCSYSDLG 374 (606)
T ss_dssp TTCCCSE--EEEESCCCSSCCCC-CCSSCCEEEEESCSSCEEC----CCCCCTTCCE---EECCSSCEEEEEECCHHHHC
T ss_pred ccccCCE--EEcccccCcccccC-CCCccceeeccCCcCccch----hhccCCCCCE---EECcCCccCCCcchhhhhcc
Confidence 3345665 88899999999987 8999999999988433211 2344444444 55566665443 2 34
Q ss_pred CCCCCceeeCCccccchhhhHHHhhhccCCccEEEccCCCCCCCC---CCCCCCCCCEEEccCCCCcccCCCcCC--CCc
Q 035577 347 LNGSTAVKVDGKVTAGMEAVTKYISSLSASATTVQLSNHGLVVIP---FLSAFVSLKVLNLSGNAIVRITAGALP--RGL 421 (662)
Q Consensus 347 l~~L~~L~l~~~~~~~l~~l~~~l~~l~~sL~~L~Ls~N~L~~lp---~l~~L~~L~~L~Ls~N~L~~l~~~~~~--~~L 421 (662)
+..|+.|++.++....+. ..+..++. |+.|++++|.+..++ .+..+++|++|+|++|.++.+.+..+. ++|
T Consensus 375 ~~~L~~L~L~~n~l~~~~---~~~~~l~~-L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L 450 (606)
T 3vq2_A 375 TNSLRHLDLSFNGAIIMS---ANFMGLEE-LQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSL 450 (606)
T ss_dssp CSCCCEEECCSCSEEEEC---CCCTTCTT-CCEEECTTSEEESTTTTTTTTTCTTCCEEECTTSCCEECCTTTTTTCTTC
T ss_pred CCcccEeECCCCccccch---hhccCCCC-CCeeECCCCccCCccChhhhhccccCCEEECcCCCCCccchhhhcCCCCC
Confidence 688999999887654433 44555554 999999999998663 388999999999999999887766665 899
Q ss_pred cEEEccCCCCCC--Cc-CCCCCCCCCEEeCcCCCCcccc-ccccCCCCCcEEEcCCCCCCCc-c-cccCCCCCcEEECCC
Q 035577 422 HILNLSKNNIST--IE-GLRELTRLRVLDLSYNRILRIG-HGLASCSSLKELYLAGNKISEV-E-GLHRLLKLTVLDLRF 495 (662)
Q Consensus 422 ~~L~Ls~N~L~~--lp-~l~~L~~L~~LdLs~N~Ls~Lp-~~l~~L~~L~~L~Ls~N~L~~l-~-~l~~L~~L~~LdLs~ 495 (662)
++|+|++|.++. +| .+..+++|++|+|++|.++.++ ..|..+++|+.|+|++|+|+++ + .+..+++|+.|+|++
T Consensus 451 ~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~ 530 (606)
T 3vq2_A 451 NTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSF 530 (606)
T ss_dssp CEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCEEGGGTTTCTTCCEEECTT
T ss_pred CEEECCCCcCCCcchHHhhccCCCCCEEECCCCcCCccChhhhcccccCCEEECCCCcCCCcCHHHccCCCcCCEEECCC
Confidence 999999999986 45 6899999999999999999764 5599999999999999999988 3 788999999999999
Q ss_pred CccCccccchHhhhcCC-CCcEEEccCCCCCCCCChHHHHHHHHh
Q 035577 496 NKISTAKCLGQLAANYN-SLQAISLEGNPAQKNVGDEQLKKNLQS 539 (662)
Q Consensus 496 N~Ls~l~~l~~~l~~l~-~L~~L~Ls~N~l~~~~~~~~l~~~l~~ 539 (662)
|+|+.++ ..+..++ +|+.|++++|++.|.|+..++..|+..
T Consensus 531 N~l~~~p---~~~~~l~~~L~~l~l~~N~~~c~c~~~~~~~~l~~ 572 (606)
T 3vq2_A 531 NRIETSK---GILQHFPKSLAFFNLTNNSVACICEHQKFLQWVKE 572 (606)
T ss_dssp SCCCCEE---SCGGGSCTTCCEEECCSCCCCCSSTTHHHHTTTTT
T ss_pred CcCcccC---HhHhhhcccCcEEEccCCCcccCCccHHHHHHHHc
Confidence 9999874 3367786 599999999999999998877776643
No 31
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.82 E-value=3.6e-19 Score=183.07 Aligned_cols=178 Identities=24% Similarity=0.328 Sum_probs=152.7
Q ss_pred CCCCCceeeCCccccchhhhHHHhhhccCCccEEEccCCCCCCCCCCCCCCCCCEEEccCCCCcccCCCcCC--CCccEE
Q 035577 347 LNGSTAVKVDGKVTAGMEAVTKYISSLSASATTVQLSNHGLVVIPFLSAFVSLKVLNLSGNAIVRITAGALP--RGLHIL 424 (662)
Q Consensus 347 l~~L~~L~l~~~~~~~l~~l~~~l~~l~~sL~~L~Ls~N~L~~lp~l~~L~~L~~L~Ls~N~L~~l~~~~~~--~~L~~L 424 (662)
+..|+.|.+.++....+.. +..++. |++|+|++|.++.++.+..+++|++|+|++|.|+.++...+. ++|++|
T Consensus 40 l~~L~~L~l~~~~i~~~~~----l~~l~~-L~~L~l~~n~l~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 114 (272)
T 3rfs_A 40 LNSIDQIIANNSDIKSVQG----IQYLPN-VRYLALGGNKLHDISALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKEL 114 (272)
T ss_dssp HTTCCEEECTTSCCCCCTT----GGGCTT-CCEEECTTSCCCCCGGGTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEE
T ss_pred ccceeeeeeCCCCcccccc----cccCCC-CcEEECCCCCCCCchhhcCCCCCCEEECCCCccCccChhHhcCCcCCCEE
Confidence 5667777777765554432 334444 999999999999988899999999999999999999887665 899999
Q ss_pred EccCCCCCCCcC--CCCCCCCCEEeCcCCCCcccccc-ccCCCCCcEEEcCCCCCCCccc--ccCCCCCcEEECCCCccC
Q 035577 425 NLSKNNISTIEG--LRELTRLRVLDLSYNRILRIGHG-LASCSSLKELYLAGNKISEVEG--LHRLLKLTVLDLRFNKIS 499 (662)
Q Consensus 425 ~Ls~N~L~~lp~--l~~L~~L~~LdLs~N~Ls~Lp~~-l~~L~~L~~L~Ls~N~L~~l~~--l~~L~~L~~LdLs~N~Ls 499 (662)
+|++|+|+.++. +..+++|++|+|++|.|+.+|.. |..+++|+.|+|++|.|++++. +..+++|+.|+|++|.|+
T Consensus 115 ~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~ 194 (272)
T 3rfs_A 115 VLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQLK 194 (272)
T ss_dssp ECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCS
T ss_pred ECCCCcCCccCHHHhccCCCCCEEECCCCccCccCHHHhccCccCCEEECCCCCcCccCHHHhcCCccCCEEECCCCcCC
Confidence 999999998863 88999999999999999988766 7899999999999999998853 788999999999999999
Q ss_pred ccccchHhhhcCCCCcEEEccCCCCCCCCChH
Q 035577 500 TAKCLGQLAANYNSLQAISLEGNPAQKNVGDE 531 (662)
Q Consensus 500 ~l~~l~~~l~~l~~L~~L~Ls~N~l~~~~~~~ 531 (662)
+++ +..+..+++|+.|+|++|++.|.|+..
T Consensus 195 ~~~--~~~~~~l~~L~~L~l~~N~~~~~~~~l 224 (272)
T 3rfs_A 195 SVP--DGVFDRLTSLQYIWLHDNPWDCTCPGI 224 (272)
T ss_dssp CCC--TTTTTTCTTCCEEECCSSCBCCCTTTT
T ss_pred ccC--HHHHhCCcCCCEEEccCCCccccCcHH
Confidence 885 566788999999999999999987743
No 32
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.82 E-value=4.3e-20 Score=212.74 Aligned_cols=52 Identities=17% Similarity=0.248 Sum_probs=19.6
Q ss_pred CCCEEeCcCCCCcccccccc--CCCCCcEEEcCCCCCCCcc-cccCCCCCcEEEC
Q 035577 442 RLRVLDLSYNRILRIGHGLA--SCSSLKELYLAGNKISEVE-GLHRLLKLTVLDL 493 (662)
Q Consensus 442 ~L~~LdLs~N~Ls~Lp~~l~--~L~~L~~L~Ls~N~L~~l~-~l~~L~~L~~LdL 493 (662)
+|++|+|++|.|+.+|..+. .+++|+.|+|++|+|+++| .+..+++|+.|+|
T Consensus 489 ~L~~L~Ls~N~l~~lp~~~~~~~l~~L~~L~Ls~N~l~~ip~~~~~l~~L~~L~L 543 (636)
T 4eco_A 489 LLTSIDLRFNKLTKLSDDFRATTLPYLVGIDLSYNSFSKFPTQPLNSSTLKGFGI 543 (636)
T ss_dssp GCCEEECCSSCCCBCCGGGSTTTCTTCCEEECCSSCCSSCCCGGGGCSSCCEEEC
T ss_pred CccEEECcCCcCCccChhhhhccCCCcCEEECCCCCCCCcChhhhcCCCCCEEEC
Confidence 33333333333333333332 3333333333333333332 2333333333333
No 33
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.82 E-value=1.4e-19 Score=191.79 Aligned_cols=222 Identities=15% Similarity=0.155 Sum_probs=169.5
Q ss_pred CCCCceeecCCccCCCcchhhhcCCCCCCCCcccCCCCCCCCccCCcccCCCCCceeeCCccccchhhhHHHhhhccCCc
Q 035577 298 HEQWDKLPSKHFKIKRIKEWVNDLQHCSPLEESDETSVSNDQVKRDPKVLNGSTAVKVDGKVTAGMEAVTKYISSLSASA 377 (662)
Q Consensus 298 l~~L~~L~l~~~si~~L~~~~~~L~~l~~L~~L~~l~ls~n~L~~~p~~l~~L~~L~l~~~~~~~l~~l~~~l~~l~~sL 377 (662)
...++.|++.++.+..++.. +.. +.+|+.|++.++.+.. ++..+..++. |
T Consensus 80 ~~~l~~L~L~~n~l~~lp~~---l~~-----------------------l~~L~~L~L~~n~l~~---lp~~~~~l~~-L 129 (328)
T 4fcg_A 80 QPGRVALELRSVPLPQFPDQ---AFR-----------------------LSHLQHMTIDAAGLME---LPDTMQQFAG-L 129 (328)
T ss_dssp STTCCEEEEESSCCSSCCSC---GGG-----------------------GTTCSEEEEESSCCCC---CCSCGGGGTT-C
T ss_pred ccceeEEEccCCCchhcChh---hhh-----------------------CCCCCEEECCCCCccc---hhHHHhccCC-C
Confidence 35677888888887766642 111 3344455554443332 2233344444 8
Q ss_pred cEEEccCCCCCCCCC-CCCCCCCCEEEccCCCC-cccCCCcC----------CCCccEEEccCCCCCCCc-CCCCCCCCC
Q 035577 378 TTVQLSNHGLVVIPF-LSAFVSLKVLNLSGNAI-VRITAGAL----------PRGLHILNLSKNNISTIE-GLRELTRLR 444 (662)
Q Consensus 378 ~~L~Ls~N~L~~lp~-l~~L~~L~~L~Ls~N~L-~~l~~~~~----------~~~L~~L~Ls~N~L~~lp-~l~~L~~L~ 444 (662)
++|+|++|.|+.+|. +..+++|++|+|++|++ ..+|.... .++|++|+|++|.|+.+| .+..+++|+
T Consensus 130 ~~L~Ls~n~l~~lp~~l~~l~~L~~L~L~~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~lp~~l~~l~~L~ 209 (328)
T 4fcg_A 130 ETLTLARNPLRALPASIASLNRLRELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIRSLPASIANLQNLK 209 (328)
T ss_dssp SEEEEESCCCCCCCGGGGGCTTCCEEEEEEETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEECCCCCCGGGGGCTTCC
T ss_pred CEEECCCCccccCcHHHhcCcCCCEEECCCCCCccccChhHhhccchhhhccCCCCCEEECcCCCcCcchHhhcCCCCCC
Confidence 999999999998886 89999999999999654 44554331 378999999999999887 688999999
Q ss_pred EEeCcCCCCccccccccCCCCCcEEEcCCCCCCCc-c-cccCCCCCcEEECCCCccCccccchHhhhcCCCCcEEEccCC
Q 035577 445 VLDLSYNRILRIGHGLASCSSLKELYLAGNKISEV-E-GLHRLLKLTVLDLRFNKISTAKCLGQLAANYNSLQAISLEGN 522 (662)
Q Consensus 445 ~LdLs~N~Ls~Lp~~l~~L~~L~~L~Ls~N~L~~l-~-~l~~L~~L~~LdLs~N~Ls~l~~l~~~l~~l~~L~~L~Ls~N 522 (662)
+|+|++|.++.+|..+..+++|++|+|++|.+.+. + .+..+++|+.|+|++|.+.+. +|..+..+++|+.|+|++|
T Consensus 210 ~L~L~~N~l~~l~~~l~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~--~p~~~~~l~~L~~L~L~~n 287 (328)
T 4fcg_A 210 SLKIRNSPLSALGPAIHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLT--LPLDIHRLTQLEKLDLRGC 287 (328)
T ss_dssp EEEEESSCCCCCCGGGGGCTTCCEEECTTCTTCCBCCCCTTCCCCCCEEECTTCTTCCB--CCTTGGGCTTCCEEECTTC
T ss_pred EEEccCCCCCcCchhhccCCCCCEEECcCCcchhhhHHHhcCCCCCCEEECCCCCchhh--cchhhhcCCCCCEEeCCCC
Confidence 99999999999998899999999999999887755 4 688899999999999887765 3667789999999999999
Q ss_pred CCCCCCChHHHHHHHHhhCccCceeecCCCCCCcc
Q 035577 523 PAQKNVGDEQLKKNLQSLLPHLVYFNWQPMKASTL 557 (662)
Q Consensus 523 ~l~~~~~~~~l~~~l~~~l~~L~~Ld~~~~~~~~l 557 (662)
++.+.+|.. +..+++++.+++.......+
T Consensus 288 ~~~~~iP~~------l~~L~~L~~l~l~~~~~~~l 316 (328)
T 4fcg_A 288 VNLSRLPSL------IAQLPANCIILVPPHLQAQL 316 (328)
T ss_dssp TTCCCCCGG------GGGSCTTCEEECCGGGSCC-
T ss_pred CchhhccHH------HhhccCceEEeCCHHHHHHH
Confidence 999988863 46788888887775554443
No 34
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.82 E-value=6.3e-20 Score=211.37 Aligned_cols=268 Identities=16% Similarity=0.178 Sum_probs=182.6
Q ss_pred CcccCcccccccCCCC-Ccc--CCC-CCC------CCCCceeecCCccCCCcch--hhhcCCCCCCCCcccCCCCCCCCc
Q 035577 273 NYSALAKDWVMPDENS-VKK--LQG-ESL------HEQWDKLPSKHFKIKRIKE--WVNDLQHCSPLEESDETSVSNDQV 340 (662)
Q Consensus 273 ~l~~L~~~~L~ls~N~-I~~--L~~-~s~------l~~L~~L~l~~~si~~L~~--~~~~L~~l~~L~~L~~l~ls~n~L 340 (662)
.+..|.. ++++.|. +.. ++. +.. +++|+.|++.+|.+..++. . +..+..|+.| .++.+.+
T Consensus 271 ~l~~L~~--L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~~ip~~~~---l~~l~~L~~L---~L~~N~l 342 (636)
T 4eco_A 271 ALPEMQL--INVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLKTFPVETS---LQKMKKLGML---ECLYNQL 342 (636)
T ss_dssp TCSSCCE--EECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCSSCCCHHH---HTTCTTCCEE---ECCSCCC
T ss_pred cCCCCCE--EECcCCCCCccccchHHHHhhhccccCCCCCEEECCCCcCCccCchhh---hccCCCCCEE---eCcCCcC
Confidence 4455665 7777776 653 443 222 3778888888888877765 3 3333444443 3444555
Q ss_pred c-CCc--ccCCCCCceeeCCccccchhhhHHHhhhccCCccEEEccCCCCCCCCC-CCCCC--CCCEEEccCCCCcccCC
Q 035577 341 K-RDP--KVLNGSTAVKVDGKVTAGMEAVTKYISSLSASATTVQLSNHGLVVIPF-LSAFV--SLKVLNLSGNAIVRITA 414 (662)
Q Consensus 341 ~-~~p--~~l~~L~~L~l~~~~~~~l~~l~~~l~~l~~sL~~L~Ls~N~L~~lp~-l~~L~--~L~~L~Ls~N~L~~l~~ 414 (662)
. .+| ..+.+|+.|++.++... .++..+..++..|+.|+|++|.|+.+|. +..+. +|++|+|++|.|+...+
T Consensus 343 ~g~ip~~~~l~~L~~L~L~~N~l~---~lp~~l~~l~~~L~~L~Ls~N~l~~lp~~~~~~~l~~L~~L~Ls~N~l~~~~p 419 (636)
T 4eco_A 343 EGKLPAFGSEIKLASLNLAYNQIT---EIPANFCGFTEQVENLSFAHNKLKYIPNIFDAKSVSVMSAIDFSYNEIGSVDG 419 (636)
T ss_dssp EEECCCCEEEEEESEEECCSSEEE---ECCTTSEEECTTCCEEECCSSCCSSCCSCCCTTCSSCEEEEECCSSCTTTTTT
T ss_pred ccchhhhCCCCCCCEEECCCCccc---cccHhhhhhcccCcEEEccCCcCcccchhhhhcccCccCEEECcCCcCCCcch
Confidence 4 343 22456677777775444 3444555665558888888888888876 54443 78888888888876544
Q ss_pred CcCC---------CCccEEEccCCCCCCCcC--CCCCCCCCEEeCcCCCCccccccccC-C-------CCCcEEEcCCCC
Q 035577 415 GALP---------RGLHILNLSKNNISTIEG--LRELTRLRVLDLSYNRILRIGHGLAS-C-------SSLKELYLAGNK 475 (662)
Q Consensus 415 ~~~~---------~~L~~L~Ls~N~L~~lp~--l~~L~~L~~LdLs~N~Ls~Lp~~l~~-L-------~~L~~L~Ls~N~ 475 (662)
..+. .+|++|+|++|+|+.+|. +..+++|++|+|++|.|+.+|..+.. + ++|+.|+|++|.
T Consensus 420 ~~l~~~~~~~~~~~~L~~L~Ls~N~l~~lp~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~~~~~~~~l~~L~~L~Ls~N~ 499 (636)
T 4eco_A 420 KNFDPLDPTPFKGINVSSINLSNNQISKFPKELFSTGSPLSSINLMGNMLTEIPKNSLKDENENFKNTYLLTSIDLRFNK 499 (636)
T ss_dssp CSSCTTCSSCCCCCCEEEEECCSSCCCSCCTHHHHTTCCCSEEECCSSCCSBCCSSSSEETTEECTTGGGCCEEECCSSC
T ss_pred hhhcccccccccCCCCCEEECcCCccCcCCHHHHccCCCCCEEECCCCCCCCcCHHHhccccccccccCCccEEECcCCc
Confidence 3332 478888888888888763 55678888888888888888765332 2 288888888888
Q ss_pred CCCcc-ccc--CCCCCcEEECCCCccCccccchHhhhcCCCCcEEEc------cCCCCCCCCChHHHHHHHHhhCccCce
Q 035577 476 ISEVE-GLH--RLLKLTVLDLRFNKISTAKCLGQLAANYNSLQAISL------EGNPAQKNVGDEQLKKNLQSLLPHLVY 546 (662)
Q Consensus 476 L~~l~-~l~--~L~~L~~LdLs~N~Ls~l~~l~~~l~~l~~L~~L~L------s~N~l~~~~~~~~l~~~l~~~l~~L~~ 546 (662)
|+.+| .+. .+++|+.|+|++|+|+++ |..+..+++|+.|+| ++|.+.+.+|.. +..+++|+.
T Consensus 500 l~~lp~~~~~~~l~~L~~L~Ls~N~l~~i---p~~~~~l~~L~~L~Ls~N~~ls~N~l~~~~p~~------l~~l~~L~~ 570 (636)
T 4eco_A 500 LTKLSDDFRATTLPYLVGIDLSYNSFSKF---PTQPLNSSTLKGFGIRNQRDAQGNRTLREWPEG------ITLCPSLTQ 570 (636)
T ss_dssp CCBCCGGGSTTTCTTCCEEECCSSCCSSC---CCGGGGCSSCCEEECCSCBCTTCCBCCCCCCTT------GGGCSSCCE
T ss_pred CCccChhhhhccCCCcCEEECCCCCCCCc---ChhhhcCCCCCEEECCCCcccccCcccccChHH------HhcCCCCCE
Confidence 88775 454 788888888888888875 555677888888888 456666666542 355788888
Q ss_pred eecCCCCCCccccc
Q 035577 547 FNWQPMKASTLKDA 560 (662)
Q Consensus 547 Ld~~~~~~~~l~~~ 560 (662)
|++..+.+..++..
T Consensus 571 L~Ls~N~l~~ip~~ 584 (636)
T 4eco_A 571 LQIGSNDIRKVNEK 584 (636)
T ss_dssp EECCSSCCCBCCSC
T ss_pred EECCCCcCCccCHh
Confidence 88888888766654
No 35
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.81 E-value=7.2e-19 Score=199.79 Aligned_cols=266 Identities=15% Similarity=0.174 Sum_probs=209.8
Q ss_pred CcccCcccccccCCCCCccCCC-CCCCCCCceeecCCccCCCcchhhhcCCCCCCCCcccCCCCCCCCcc-CC----ccc
Q 035577 273 NYSALAKDWVMPDENSVKKLQG-ESLHEQWDKLPSKHFKIKRIKEWVNDLQHCSPLEESDETSVSNDQVK-RD----PKV 346 (662)
Q Consensus 273 ~l~~L~~~~L~ls~N~I~~L~~-~s~l~~L~~L~l~~~si~~L~~~~~~L~~l~~L~~L~~l~ls~n~L~-~~----p~~ 346 (662)
.+..|.. ++++.|.+..++. +..+++|+.|++.+|.+..+.. ..+..++.|+.|. ++.+.+. .. ...
T Consensus 276 ~l~~L~~--L~l~~n~l~~lp~~l~~l~~L~~L~l~~n~l~~~~~--~~~~~l~~L~~L~---l~~n~~~~~~~~~~~~~ 348 (606)
T 3t6q_A 276 CFSGLQE--LDLTATHLSELPSGLVGLSTLKKLVLSANKFENLCQ--ISASNFPSLTHLS---IKGNTKRLELGTGCLEN 348 (606)
T ss_dssp TCTTCSE--EECTTSCCSCCCSSCCSCTTCCEEECTTCCCSBGGG--GCGGGCTTCSEEE---CCSCSSCCBCCSSTTTT
T ss_pred cccCCCE--EeccCCccCCCChhhcccccCCEEECccCCcCcCch--hhhhccCcCCEEE---CCCCCcccccchhhhhc
Confidence 4466666 8999999999987 7888999999999999988643 2334445555544 3444332 11 234
Q ss_pred CCCCCceeeCCccccchhhhHHHhhhccCCccEEEccCCCCCCCC-C-CCCCCCCCEEEccCCCCcccCCCc-CC--CCc
Q 035577 347 LNGSTAVKVDGKVTAGMEAVTKYISSLSASATTVQLSNHGLVVIP-F-LSAFVSLKVLNLSGNAIVRITAGA-LP--RGL 421 (662)
Q Consensus 347 l~~L~~L~l~~~~~~~l~~l~~~l~~l~~sL~~L~Ls~N~L~~lp-~-l~~L~~L~~L~Ls~N~L~~l~~~~-~~--~~L 421 (662)
+.+|+.|++.++....+...+..+..++. |+.|++++|.+..++ . |..+++|++|+|++|.++...... +. ++|
T Consensus 349 l~~L~~L~l~~n~l~~~~~~~~~~~~l~~-L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L 427 (606)
T 3t6q_A 349 LENLRELDLSHDDIETSDCCNLQLRNLSH-LQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLL 427 (606)
T ss_dssp CTTCCEEECCSSCCCEEEESTTTTTTCTT-CCEEECCSCSCEEECTTTTTTCTTCSEEECTTCCEECCTTCCTTTTCTTC
T ss_pred cCcCCEEECCCCccccccCcchhcccCCC-CCEEECCCCcCCcCCHHHhcCCccCCeEECCCCcCCCcccchhhhCcccC
Confidence 68899999998776655433445556665 999999999998664 3 899999999999999998764432 43 799
Q ss_pred cEEEccCCCCCCCc--CCCCCCCCCEEeCcCCCCcc--cc--ccccCCCCCcEEEcCCCCCCCcc--cccCCCCCcEEEC
Q 035577 422 HILNLSKNNISTIE--GLRELTRLRVLDLSYNRILR--IG--HGLASCSSLKELYLAGNKISEVE--GLHRLLKLTVLDL 493 (662)
Q Consensus 422 ~~L~Ls~N~L~~lp--~l~~L~~L~~LdLs~N~Ls~--Lp--~~l~~L~~L~~L~Ls~N~L~~l~--~l~~L~~L~~LdL 493 (662)
++|+|++|.++..+ .+..+++|++|+|++|.++. ++ ..+..+++|++|+|++|.+++++ .+..+++|+.|+|
T Consensus 428 ~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L 507 (606)
T 3t6q_A 428 KVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHAFTSLKMMNHVDL 507 (606)
T ss_dssp CEEECTTCCCBTTCTTTTTTCTTCCEEECTTCBCGGGEECSSCGGGGCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEC
T ss_pred CEEECCCCccCCcCHHHHhCCCCCCEEECCCCCCCccccccchhhccCCCccEEECCCCccCccChhhhccccCCCEEEC
Confidence 99999999998763 58899999999999999985 33 45889999999999999999883 6899999999999
Q ss_pred CCCccCccccchHhhhcCCCCcEEEccCCCCCCCCChHHHHHHHHhhCccCceeecCCCCCC
Q 035577 494 RFNKISTAKCLGQLAANYNSLQAISLEGNPAQKNVGDEQLKKNLQSLLPHLVYFNWQPMKAS 555 (662)
Q Consensus 494 s~N~Ls~l~~l~~~l~~l~~L~~L~Ls~N~l~~~~~~~~l~~~l~~~l~~L~~Ld~~~~~~~ 555 (662)
++|+|++.. +..+..++.| .|+|++|.+++..+. ....+++|+++++..+.+.
T Consensus 508 s~N~l~~~~--~~~l~~l~~L-~L~L~~N~l~~~~~~------~~~~l~~L~~L~l~~N~~~ 560 (606)
T 3t6q_A 508 SHNRLTSSS--IEALSHLKGI-YLNLASNHISIILPS------LLPILSQQRTINLRQNPLD 560 (606)
T ss_dssp CSSCCCGGG--GGGGTTCCSC-EEECCSSCCCCCCGG------GHHHHHTSSEEECTTCCEE
T ss_pred CCCccCcCC--hhHhCccccc-EEECcCCcccccCHh------hcccCCCCCEEeCCCCCcc
Confidence 999999874 7788999999 999999999975443 2345688999999988753
No 36
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.81 E-value=1.2e-18 Score=200.42 Aligned_cols=239 Identities=18% Similarity=0.201 Sum_probs=169.3
Q ss_pred ccCcccccccCCCCCccCCCCCCCCCCceeecCCccCCCcchhhhcCCCCCCCCcccCCCCCCCCccCCcccCCCCCcee
Q 035577 275 SALAKDWVMPDENSVKKLQGESLHEQWDKLPSKHFKIKRIKEWVNDLQHCSPLEESDETSVSNDQVKRDPKVLNGSTAVK 354 (662)
Q Consensus 275 ~~L~~~~L~ls~N~I~~L~~~s~l~~L~~L~l~~~si~~L~~~~~~L~~l~~L~~L~~l~ls~n~L~~~p~~l~~L~~L~ 354 (662)
.++.. |+++.|.++.|+. .+.+|+.|++.+|.++.++. .+..|+ .++++.|.+..++..+.+|+.|+
T Consensus 61 ~~L~~--L~L~~N~l~~lp~--~l~~L~~L~Ls~N~l~~lp~------~l~~L~---~L~Ls~N~l~~l~~~l~~L~~L~ 127 (622)
T 3g06_A 61 AHITT--LVIPDNNLTSLPA--LPPELRTLEVSGNQLTSLPV------LPPGLL---ELSIFSNPLTHLPALPSGLCKLW 127 (622)
T ss_dssp TTCSE--EEECSCCCSCCCC--CCTTCCEEEECSCCCSCCCC------CCTTCC---EEEECSCCCCCCCCCCTTCCEEE
T ss_pred CCCcE--EEecCCCCCCCCC--cCCCCCEEEcCCCcCCcCCC------CCCCCC---EEECcCCcCCCCCCCCCCcCEEE
Confidence 45555 7788888888776 56788888888888777663 233333 34456666666666677888888
Q ss_pred eCCccccchhhhHHHhhhccCCccEEEccCCCCCCCCCCCCCCCCCEEEccCCCCcccCCCcCCCCccEEEccCCCCCCC
Q 035577 355 VDGKVTAGMEAVTKYISSLSASATTVQLSNHGLVVIPFLSAFVSLKVLNLSGNAIVRITAGALPRGLHILNLSKNNISTI 434 (662)
Q Consensus 355 l~~~~~~~l~~l~~~l~~l~~sL~~L~Ls~N~L~~lp~l~~L~~L~~L~Ls~N~L~~l~~~~~~~~L~~L~Ls~N~L~~l 434 (662)
+.++.+..+... ..+|+.|+|++|.|+.+|. .+.+|+.|+|++|.|+.++ ..+++|+.|+|++|.|+.+
T Consensus 128 L~~N~l~~lp~~-------l~~L~~L~Ls~N~l~~l~~--~~~~L~~L~L~~N~l~~l~--~~~~~L~~L~Ls~N~l~~l 196 (622)
T 3g06_A 128 IFGNQLTSLPVL-------PPGLQELSVSDNQLASLPA--LPSELCKLWAYNNQLTSLP--MLPSGLQELSVSDNQLASL 196 (622)
T ss_dssp CCSSCCSCCCCC-------CTTCCEEECCSSCCSCCCC--CCTTCCEEECCSSCCSCCC--CCCTTCCEEECCSSCCSCC
T ss_pred CCCCCCCcCCCC-------CCCCCEEECcCCcCCCcCC--ccCCCCEEECCCCCCCCCc--ccCCCCcEEECCCCCCCCC
Confidence 887665544321 2458888888888887775 3467888888888888777 3346788888888888877
Q ss_pred cCCCCCCCCCEEeCcCCCCccccccccCCCCCcEEEcCCCCCCCcccccCCCCCcEEECCCCccCccccchHhhhcCCCC
Q 035577 435 EGLRELTRLRVLDLSYNRILRIGHGLASCSSLKELYLAGNKISEVEGLHRLLKLTVLDLRFNKISTAKCLGQLAANYNSL 514 (662)
Q Consensus 435 p~l~~L~~L~~LdLs~N~Ls~Lp~~l~~L~~L~~L~Ls~N~L~~l~~l~~L~~L~~LdLs~N~Ls~l~~l~~~l~~l~~L 514 (662)
|.. +++|+.|++++|.|+.+|.. +++|+.|+|++|.|+.++ ..+++|+.|+|++|.|+.++. .+++|
T Consensus 197 ~~~--~~~L~~L~L~~N~l~~l~~~---~~~L~~L~Ls~N~L~~lp--~~l~~L~~L~Ls~N~L~~lp~------~~~~L 263 (622)
T 3g06_A 197 PTL--PSELYKLWAYNNRLTSLPAL---PSGLKELIVSGNRLTSLP--VLPSELKELMVSGNRLTSLPM------LPSGL 263 (622)
T ss_dssp CCC--CTTCCEEECCSSCCSSCCCC---CTTCCEEECCSSCCSCCC--CCCTTCCEEECCSSCCSCCCC------CCTTC
T ss_pred CCc--cchhhEEECcCCcccccCCC---CCCCCEEEccCCccCcCC--CCCCcCcEEECCCCCCCcCCc------ccccC
Confidence 643 46788888888888777743 467888888888888776 455778888888888887642 45778
Q ss_pred cEEEccCCCCCCCCChHHHHHHHHhhCccCceeecCCCCCCcc
Q 035577 515 QAISLEGNPAQKNVGDEQLKKNLQSLLPHLVYFNWQPMKASTL 557 (662)
Q Consensus 515 ~~L~Ls~N~l~~~~~~~~l~~~l~~~l~~L~~Ld~~~~~~~~l 557 (662)
+.|+|++|.|+ .+|. .+..+++|+.|++..+.+...
T Consensus 264 ~~L~Ls~N~L~-~lp~------~l~~l~~L~~L~L~~N~l~~~ 299 (622)
T 3g06_A 264 LSLSVYRNQLT-RLPE------SLIHLSSETTVNLEGNPLSER 299 (622)
T ss_dssp CEEECCSSCCC-SCCG------GGGGSCTTCEEECCSCCCCHH
T ss_pred cEEeCCCCCCC-cCCH------HHhhccccCEEEecCCCCCCc
Confidence 88888888887 3443 135678888888888776543
No 37
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.81 E-value=1.9e-19 Score=194.04 Aligned_cols=256 Identities=18% Similarity=0.211 Sum_probs=193.2
Q ss_pred cCcccCcccccccCCCCCccCCC--CCCCCCCceeecCCccCCCcchhhhcCCCCCCCCcccCCCCCCCCccCCc----c
Q 035577 272 CNYSALAKDWVMPDENSVKKLQG--ESLHEQWDKLPSKHFKIKRIKEWVNDLQHCSPLEESDETSVSNDQVKRDP----K 345 (662)
Q Consensus 272 ~~l~~L~~~~L~ls~N~I~~L~~--~s~l~~L~~L~l~~~si~~L~~~~~~L~~l~~L~~L~~l~ls~n~L~~~p----~ 345 (662)
..+..|.. ++++.|.+..++. +..+++|+.|++.+|.++.++.. .+..+..|+. +.++.+.+...+ .
T Consensus 90 ~~l~~L~~--L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~--~~~~l~~L~~---L~L~~n~l~~~~~~~~~ 162 (390)
T 3o6n_A 90 AYAHTIQK--LYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRG--IFHNTPKLTT---LSMSNNNLERIEDDTFQ 162 (390)
T ss_dssp TTCTTCCE--EECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTT--TTTTCTTCCE---EECCSSCCCBCCTTTTS
T ss_pred cCCCCcCE--EECCCCCCCcCCHHHhcCCCCCCEEECCCCccCcCCHH--HhcCCCCCcE---EECCCCccCccChhhcc
Confidence 34556666 8888898888866 67788899999999988877642 1234444444 444555554443 2
Q ss_pred cCCCCCceeeCCccccchhhhHHHhhhccCCccEEEccCCCCCCCCCCCCCCCCCEEEccCCCCcccCCCcCCCCccEEE
Q 035577 346 VLNGSTAVKVDGKVTAGMEAVTKYISSLSASATTVQLSNHGLVVIPFLSAFVSLKVLNLSGNAIVRITAGALPRGLHILN 425 (662)
Q Consensus 346 ~l~~L~~L~l~~~~~~~l~~l~~~l~~l~~sL~~L~Ls~N~L~~lp~l~~L~~L~~L~Ls~N~L~~l~~~~~~~~L~~L~ 425 (662)
.+.+|+.|++.++....+. +..++ .|+.|++++|.++.++. ...|+.|++++|.+..++... .++|+.|+
T Consensus 163 ~l~~L~~L~l~~n~l~~~~-----~~~l~-~L~~L~l~~n~l~~~~~---~~~L~~L~l~~n~l~~~~~~~-~~~L~~L~ 232 (390)
T 3o6n_A 163 ATTSLQNLQLSSNRLTHVD-----LSLIP-SLFHANVSYNLLSTLAI---PIAVEELDASHNSINVVRGPV-NVELTILK 232 (390)
T ss_dssp SCTTCCEEECCSSCCSBCC-----GGGCT-TCSEEECCSSCCSEEEC---CSSCSEEECCSSCCCEEECCC-CSSCCEEE
T ss_pred CCCCCCEEECCCCcCCccc-----ccccc-ccceeecccccccccCC---CCcceEEECCCCeeeeccccc-cccccEEE
Confidence 3677888888887665542 23344 38899999998886543 457899999999998886543 46899999
Q ss_pred ccCCCCCCCcCCCCCCCCCEEeCcCCCCccc-cccccCCCCCcEEEcCCCCCCCcc-cccCCCCCcEEECCCCccCcccc
Q 035577 426 LSKNNISTIEGLRELTRLRVLDLSYNRILRI-GHGLASCSSLKELYLAGNKISEVE-GLHRLLKLTVLDLRFNKISTAKC 503 (662)
Q Consensus 426 Ls~N~L~~lp~l~~L~~L~~LdLs~N~Ls~L-p~~l~~L~~L~~L~Ls~N~L~~l~-~l~~L~~L~~LdLs~N~Ls~l~~ 503 (662)
|++|.++.++.+..+++|++|+|++|.++.+ |..|..+++|+.|+|++|+|+.++ .+..+++|+.|+|++|+|+.+
T Consensus 233 l~~n~l~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~l~~L~~L~L~~n~l~~~-- 310 (390)
T 3o6n_A 233 LQHNNLTDTAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVALNLYGQPIPTLKVLDLSHNHLLHV-- 310 (390)
T ss_dssp CCSSCCCCCGGGGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECCSSCCCEEECSSSCCTTCCEEECCSSCCCCC--
T ss_pred CCCCCCcccHHHcCCCCccEEECCCCcCCCcChhHccccccCCEEECCCCcCcccCcccCCCCCCCEEECCCCcceec--
Confidence 9999999888888899999999999999866 556888999999999999998885 456788999999999998876
Q ss_pred chHhhhcCCCCcEEEccCCCCCCCCChHHHHHHHHhhCccCceeecCCCCCCc
Q 035577 504 LGQLAANYNSLQAISLEGNPAQKNVGDEQLKKNLQSLLPHLVYFNWQPMKAST 556 (662)
Q Consensus 504 l~~~l~~l~~L~~L~Ls~N~l~~~~~~~~l~~~l~~~l~~L~~Ld~~~~~~~~ 556 (662)
+..+..+++|+.|+|++|+++.. + ...+++|++|++..+.+..
T Consensus 311 -~~~~~~l~~L~~L~L~~N~i~~~-~--------~~~~~~L~~L~l~~N~~~~ 353 (390)
T 3o6n_A 311 -ERNQPQFDRLENLYLDHNSIVTL-K--------LSTHHTLKNLTLSHNDWDC 353 (390)
T ss_dssp -GGGHHHHTTCSEEECCSSCCCCC-C--------CCTTCCCSEEECCSSCEEH
T ss_pred -CccccccCcCCEEECCCCcccee-C--------chhhccCCEEEcCCCCccc
Confidence 44456788999999999998763 2 3467889999998887644
No 38
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.81 E-value=2e-18 Score=191.19 Aligned_cols=247 Identities=20% Similarity=0.228 Sum_probs=151.9
Q ss_pred cCcccccccCCCCCccCCCCCCCCCCceeecCCccCCCcchhhhcCCCCCCCCcccCCCCCCCCccCCc--ccCCCCCce
Q 035577 276 ALAKDWVMPDENSVKKLQGESLHEQWDKLPSKHFKIKRIKEWVNDLQHCSPLEESDETSVSNDQVKRDP--KVLNGSTAV 353 (662)
Q Consensus 276 ~L~~~~L~ls~N~I~~L~~~s~l~~L~~L~l~~~si~~L~~~~~~L~~l~~L~~L~~l~ls~n~L~~~p--~~l~~L~~L 353 (662)
.+.. ++++.|.++.++. .+.+|+.|++.+|.+..++.+. ..|+. ++++.+.+..+| ..+.+|+.|
T Consensus 92 ~L~~--L~l~~n~l~~lp~--~~~~L~~L~l~~n~l~~l~~~~------~~L~~---L~L~~n~l~~lp~~~~l~~L~~L 158 (454)
T 1jl5_A 92 HLES--LVASCNSLTELPE--LPQSLKSLLVDNNNLKALSDLP------PLLEY---LGVSNNQLEKLPELQNSSFLKII 158 (454)
T ss_dssp TCSE--EECCSSCCSSCCC--CCTTCCEEECCSSCCSCCCSCC------TTCCE---EECCSSCCSSCCCCTTCTTCCEE
T ss_pred CCCE--EEccCCcCCcccc--ccCCCcEEECCCCccCcccCCC------CCCCE---EECcCCCCCCCcccCCCCCCCEE
Confidence 4444 7777777777664 2467777777777776665421 23333 333444444443 235666777
Q ss_pred eeCCccccchhhhHHHhhhccCCccEEEccCCCCCCCCCCCCCCCCCEEEccCCCCcccCCCcCCCCccEEEccCCCCCC
Q 035577 354 KVDGKVTAGMEAVTKYISSLSASATTVQLSNHGLVVIPFLSAFVSLKVLNLSGNAIVRITAGALPRGLHILNLSKNNIST 433 (662)
Q Consensus 354 ~l~~~~~~~l~~l~~~l~~l~~sL~~L~Ls~N~L~~lp~l~~L~~L~~L~Ls~N~L~~l~~~~~~~~L~~L~Ls~N~L~~ 433 (662)
++.++....+.. ....|++|++++|.++.+|.+..+++|++|++++|.++.++. ++.+|++|++++|.++.
T Consensus 159 ~l~~N~l~~lp~-------~~~~L~~L~L~~n~l~~l~~~~~l~~L~~L~l~~N~l~~l~~--~~~~L~~L~l~~n~l~~ 229 (454)
T 1jl5_A 159 DVDNNSLKKLPD-------LPPSLEFIAAGNNQLEELPELQNLPFLTAIYADNNSLKKLPD--LPLSLESIVAGNNILEE 229 (454)
T ss_dssp ECCSSCCSCCCC-------CCTTCCEEECCSSCCSSCCCCTTCTTCCEEECCSSCCSSCCC--CCTTCCEEECCSSCCSS
T ss_pred ECCCCcCcccCC-------CcccccEEECcCCcCCcCccccCCCCCCEEECCCCcCCcCCC--CcCcccEEECcCCcCCc
Confidence 777765544322 123577888888888877777888888888888888876653 23578888888888887
Q ss_pred CcCCCCCCCCCEEeCcCCCCccccccccCCCCCcEEEcCCCCCCCcccccCCCCCcEEECCCCccCccccchHhh-----
Q 035577 434 IEGLRELTRLRVLDLSYNRILRIGHGLASCSSLKELYLAGNKISEVEGLHRLLKLTVLDLRFNKISTAKCLGQLA----- 508 (662)
Q Consensus 434 lp~l~~L~~L~~LdLs~N~Ls~Lp~~l~~L~~L~~L~Ls~N~L~~l~~l~~L~~L~~LdLs~N~Ls~l~~l~~~l----- 508 (662)
+|.+..+++|++|++++|.++.+|.. +++|+.|++++|++++++.. +++|+.|++++|.+++++.++..+
T Consensus 230 lp~~~~l~~L~~L~l~~N~l~~l~~~---~~~L~~L~l~~N~l~~l~~~--~~~L~~L~ls~N~l~~l~~~~~~L~~L~l 304 (454)
T 1jl5_A 230 LPELQNLPFLTTIYADNNLLKTLPDL---PPSLEALNVRDNYLTDLPEL--PQSLTFLDVSENIFSGLSELPPNLYYLNA 304 (454)
T ss_dssp CCCCTTCTTCCEEECCSSCCSSCCSC---CTTCCEEECCSSCCSCCCCC--CTTCCEEECCSSCCSEESCCCTTCCEEEC
T ss_pred ccccCCCCCCCEEECCCCcCCccccc---ccccCEEECCCCcccccCcc--cCcCCEEECcCCccCcccCcCCcCCEEEC
Confidence 77777788888888888887777643 36677777777777666532 255666666666666543221100
Q ss_pred --------hcC-CCCcEEEccCCCCCCCCChHHHHHHHHhhCccCceeecCCCCCCcccc
Q 035577 509 --------ANY-NSLQAISLEGNPAQKNVGDEQLKKNLQSLLPHLVYFNWQPMKASTLKD 559 (662)
Q Consensus 509 --------~~l-~~L~~L~Ls~N~l~~~~~~~~l~~~l~~~l~~L~~Ld~~~~~~~~l~~ 559 (662)
..+ ++|+.|++++|.+.+ ++. .+++|++|++..+.+..++.
T Consensus 305 ~~N~l~~i~~~~~~L~~L~Ls~N~l~~-lp~---------~~~~L~~L~L~~N~l~~lp~ 354 (454)
T 1jl5_A 305 SSNEIRSLCDLPPSLEELNVSNNKLIE-LPA---------LPPRLERLIASFNHLAEVPE 354 (454)
T ss_dssp CSSCCSEECCCCTTCCEEECCSSCCSC-CCC---------CCTTCCEEECCSSCCSCCCC
T ss_pred cCCcCCcccCCcCcCCEEECCCCcccc-ccc---------cCCcCCEEECCCCccccccc
Confidence 011 355666666666554 221 13566666666665555444
No 39
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.81 E-value=1.3e-19 Score=191.34 Aligned_cols=257 Identities=18% Similarity=0.193 Sum_probs=185.6
Q ss_pred cccCCCCCccCCCCCCCCCCceeecCCccCCCcchhhhcCCCCCCCCcccCCCCCCCCccCC----cccCCCCCceeeCC
Q 035577 282 VMPDENSVKKLQGESLHEQWDKLPSKHFKIKRIKEWVNDLQHCSPLEESDETSVSNDQVKRD----PKVLNGSTAVKVDG 357 (662)
Q Consensus 282 L~ls~N~I~~L~~~s~l~~L~~L~l~~~si~~L~~~~~~L~~l~~L~~L~~l~ls~n~L~~~----p~~l~~L~~L~l~~ 357 (662)
++++.+.++.++.. ..++++.|++.+|.+..++. ..+..+..|+. ++++.+.+... ...+.+|+.|++.+
T Consensus 38 l~~~~~~l~~ip~~-~~~~l~~L~l~~n~i~~~~~--~~~~~l~~L~~---L~L~~n~l~~~~~~~~~~l~~L~~L~L~~ 111 (332)
T 2ft3_A 38 VQCSDLGLKAVPKE-ISPDTTLLDLQNNDISELRK--DDFKGLQHLYA---LVLVNNKISKIHEKAFSPLRKLQKLYISK 111 (332)
T ss_dssp EECCSSCCSSCCSC-CCTTCCEEECCSSCCCEECT--TTTTTCTTCCE---EECCSSCCCEECGGGSTTCTTCCEEECCS
T ss_pred EECCCCCccccCCC-CCCCCeEEECCCCcCCccCH--hHhhCCCCCcE---EECCCCccCccCHhHhhCcCCCCEEECCC
Confidence 77888888888762 24689999999999887753 23444555554 44455555444 23367788888887
Q ss_pred ccccchhhhHHHhhhccCCccEEEccCCCCCCCCC--CCCCCCCCEEEccCCCCcc--cCCCcCC-CCccEEEccCCCCC
Q 035577 358 KVTAGMEAVTKYISSLSASATTVQLSNHGLVVIPF--LSAFVSLKVLNLSGNAIVR--ITAGALP-RGLHILNLSKNNIS 432 (662)
Q Consensus 358 ~~~~~l~~l~~~l~~l~~sL~~L~Ls~N~L~~lp~--l~~L~~L~~L~Ls~N~L~~--l~~~~~~-~~L~~L~Ls~N~L~ 432 (662)
+....+. ..+ ...|++|++++|.|+.+|. |..+++|++|+|++|.++. +....+. .+|++|++++|.++
T Consensus 112 n~l~~l~---~~~---~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~L~~L~l~~n~l~ 185 (332)
T 2ft3_A 112 NHLVEIP---PNL---PSSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGLKLNYLRISEAKLT 185 (332)
T ss_dssp SCCCSCC---SSC---CTTCCEEECCSSCCCCCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSCCCSCCBCCSSBCS
T ss_pred CcCCccC---ccc---cccCCEEECCCCccCccCHhHhCCCccCCEEECCCCccccCCCCcccccCCccCEEECcCCCCC
Confidence 6554433 222 2458899999999998875 8889999999999998864 3334443 48899999999999
Q ss_pred CCcCCCCCCCCCEEeCcCCCCcccc-ccccCCCCCcEEEcCCCCCCCcc--cccCCCCCcEEECCCCccCccccchHhhh
Q 035577 433 TIEGLRELTRLRVLDLSYNRILRIG-HGLASCSSLKELYLAGNKISEVE--GLHRLLKLTVLDLRFNKISTAKCLGQLAA 509 (662)
Q Consensus 433 ~lp~l~~L~~L~~LdLs~N~Ls~Lp-~~l~~L~~L~~L~Ls~N~L~~l~--~l~~L~~L~~LdLs~N~Ls~l~~l~~~l~ 509 (662)
.+|... .++|++|++++|.++.++ ..|..+++|+.|+|++|.|+.++ .+..+++|+.|+|++|+|+.+ |..+.
T Consensus 186 ~l~~~~-~~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~l---p~~l~ 261 (332)
T 2ft3_A 186 GIPKDL-PETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLSRV---PAGLP 261 (332)
T ss_dssp SCCSSS-CSSCSCCBCCSSCCCCCCTTSSTTCTTCSCCBCCSSCCCCCCTTGGGGCTTCCEEECCSSCCCBC---CTTGG
T ss_pred ccCccc-cCCCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCcCChhHhhCCCCCCEEECCCCcCeec---Chhhh
Confidence 887421 278999999999998776 45888999999999999998884 588889999999999999866 55578
Q ss_pred cCCCCcEEEccCCCCCCCCChHHHHHH-HHhhCccCceeecCCCCCC
Q 035577 510 NYNSLQAISLEGNPAQKNVGDEQLKKN-LQSLLPHLVYFNWQPMKAS 555 (662)
Q Consensus 510 ~l~~L~~L~Ls~N~l~~~~~~~~l~~~-l~~~l~~L~~Ld~~~~~~~ 555 (662)
.+++|+.|+|++|++++..+. .+... .....+.++.+++..+.+.
T Consensus 262 ~l~~L~~L~l~~N~l~~~~~~-~~~~~~~~~~~~~l~~L~l~~N~~~ 307 (332)
T 2ft3_A 262 DLKLLQVVYLHTNNITKVGVN-DFCPVGFGVKRAYYNGISLFNNPVP 307 (332)
T ss_dssp GCTTCCEEECCSSCCCBCCTT-SSSCSSCCSSSCCBSEEECCSSSSC
T ss_pred cCccCCEEECCCCCCCccChh-HccccccccccccccceEeecCccc
Confidence 889999999999998764322 11000 0112466778888877654
No 40
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.81 E-value=8.9e-19 Score=192.28 Aligned_cols=235 Identities=24% Similarity=0.285 Sum_probs=187.2
Q ss_pred cccCCCCCccCCCCCCCCCCceeecCCccCCCcchhhhcCCCCCCCCcccCCCCCCCCccCCcccCCCCCceeeCCcccc
Q 035577 282 VMPDENSVKKLQGESLHEQWDKLPSKHFKIKRIKEWVNDLQHCSPLEESDETSVSNDQVKRDPKVLNGSTAVKVDGKVTA 361 (662)
Q Consensus 282 L~ls~N~I~~L~~~s~l~~L~~L~l~~~si~~L~~~~~~L~~l~~L~~L~~l~ls~n~L~~~p~~l~~L~~L~l~~~~~~ 361 (662)
++...+.++.++. ....+++.|++.+|.+..++. ..+.. +.+|+.|++.++.+.
T Consensus 48 v~c~~~~l~~iP~-~~~~~l~~L~L~~n~i~~~~~--~~~~~-----------------------l~~L~~L~Ls~n~i~ 101 (440)
T 3zyj_A 48 VICVRKNLREVPD-GISTNTRLLNLHENQIQIIKV--NSFKH-----------------------LRHLEILQLSRNHIR 101 (440)
T ss_dssp EECCSCCCSSCCS-CCCTTCSEEECCSCCCCEECT--TTTSS-----------------------CSSCCEEECCSSCCC
T ss_pred EEeCCCCcCcCCC-CCCCCCcEEEccCCcCCeeCH--HHhhC-----------------------CCCCCEEECCCCcCC
Confidence 6677778888876 233678899999998877652 11222 233444444444333
Q ss_pred chhhhHHHhhhccCCccEEEccCCCCCCCCC--CCCCCCCCEEEccCCCCcccCCCcCC--CCccEEEccC-CCCCCCc-
Q 035577 362 GMEAVTKYISSLSASATTVQLSNHGLVVIPF--LSAFVSLKVLNLSGNAIVRITAGALP--RGLHILNLSK-NNISTIE- 435 (662)
Q Consensus 362 ~l~~l~~~l~~l~~sL~~L~Ls~N~L~~lp~--l~~L~~L~~L~Ls~N~L~~l~~~~~~--~~L~~L~Ls~-N~L~~lp- 435 (662)
.+. ...+..++. |+.|+|++|.|+.+|. |..+++|++|+|++|.|+.++...|. ++|++|+|++ |.+..++
T Consensus 102 ~i~--~~~~~~l~~-L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~ 178 (440)
T 3zyj_A 102 TIE--IGAFNGLAN-LNTLELFDNRLTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISE 178 (440)
T ss_dssp EEC--GGGGTTCSS-CCEEECCSSCCSSCCTTTSCSCSSCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECT
T ss_pred ccC--hhhccCCcc-CCEEECCCCcCCeeCHhHhhccccCceeeCCCCcccccCHHHhhhCcccCEeCCCCCCCcceeCc
Confidence 222 123344444 9999999999999985 99999999999999999999987776 8999999999 5666665
Q ss_pred -CCCCCCCCCEEeCcCCCCccccccccCCCCCcEEEcCCCCCCCcc--cccCCCCCcEEECCCCccCccccchHhhhcCC
Q 035577 436 -GLRELTRLRVLDLSYNRILRIGHGLASCSSLKELYLAGNKISEVE--GLHRLLKLTVLDLRFNKISTAKCLGQLAANYN 512 (662)
Q Consensus 436 -~l~~L~~L~~LdLs~N~Ls~Lp~~l~~L~~L~~L~Ls~N~L~~l~--~l~~L~~L~~LdLs~N~Ls~l~~l~~~l~~l~ 512 (662)
.|..+++|++|+|++|.|+.+| .+..+++|+.|+|++|.|+.++ .|..+++|+.|+|++|+|+.+. +..|..++
T Consensus 179 ~~~~~l~~L~~L~L~~n~l~~~~-~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~--~~~~~~l~ 255 (440)
T 3zyj_A 179 GAFEGLSNLRYLNLAMCNLREIP-NLTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIE--RNAFDNLQ 255 (440)
T ss_dssp TTTTTCSSCCEEECTTSCCSSCC-CCTTCSSCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEEC--TTSSTTCT
T ss_pred chhhcccccCeecCCCCcCcccc-ccCCCcccCEEECCCCccCccChhhhccCccCCEEECCCCceeEEC--hhhhcCCC
Confidence 5899999999999999999998 5889999999999999999883 7899999999999999999885 66788999
Q ss_pred CCcEEEccCCCCCCCCChHHHHHHHHhhCccCceeecCCCCC
Q 035577 513 SLQAISLEGNPAQKNVGDEQLKKNLQSLLPHLVYFNWQPMKA 554 (662)
Q Consensus 513 ~L~~L~Ls~N~l~~~~~~~~l~~~l~~~l~~L~~Ld~~~~~~ 554 (662)
+|+.|+|++|.++...+. ....+++|+.|++..+.+
T Consensus 256 ~L~~L~L~~N~l~~~~~~------~~~~l~~L~~L~L~~Np~ 291 (440)
T 3zyj_A 256 SLVEINLAHNNLTLLPHD------LFTPLHHLERIHLHHNPW 291 (440)
T ss_dssp TCCEEECTTSCCCCCCTT------TTSSCTTCCEEECCSSCE
T ss_pred CCCEEECCCCCCCccChh------HhccccCCCEEEcCCCCc
Confidence 999999999999874432 345689999999998864
No 41
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.81 E-value=2.1e-19 Score=188.65 Aligned_cols=145 Identities=29% Similarity=0.364 Sum_probs=116.0
Q ss_pred ccEEEccCCCCCCCCCCCCCCCCCEEEccCCCCcccCCCcCCCCccEEEccCCCCCCCcCCCCCCCCCEEeCcCCCCccc
Q 035577 377 ATTVQLSNHGLVVIPFLSAFVSLKVLNLSGNAIVRITAGALPRGLHILNLSKNNISTIEGLRELTRLRVLDLSYNRILRI 456 (662)
Q Consensus 377 L~~L~Ls~N~L~~lp~l~~L~~L~~L~Ls~N~L~~l~~~~~~~~L~~L~Ls~N~L~~lp~l~~L~~L~~LdLs~N~Ls~L 456 (662)
|+.|+|++|.|+.++.+..+++|++|+|++|.|+.++.....++|++|+|++|.|+.++.+..+++|++|+|++|.++.+
T Consensus 87 L~~L~L~~n~l~~~~~~~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~l~~n~l~~~ 166 (308)
T 1h6u_A 87 ITELELSGNPLKNVSAIAGLQSIKTLDLTSTQITDVTPLAGLSNLQVLYLDLNQITNISPLAGLTNLQYLSIGNAQVSDL 166 (308)
T ss_dssp CCEEECCSCCCSCCGGGTTCTTCCEEECTTSCCCCCGGGTTCTTCCEEECCSSCCCCCGGGGGCTTCCEEECCSSCCCCC
T ss_pred CCEEEccCCcCCCchhhcCCCCCCEEECCCCCCCCchhhcCCCCCCEEECCCCccCcCccccCCCCccEEEccCCcCCCC
Confidence 77888888888887778888888888888888877764332378888888888888877788888888888888888877
Q ss_pred cccccCCCCCcEEEcCCCCCCCcccccCCCCCcEEECCCCccCccccchHhhhcCCCCcEEEccCCCCCC
Q 035577 457 GHGLASCSSLKELYLAGNKISEVEGLHRLLKLTVLDLRFNKISTAKCLGQLAANYNSLQAISLEGNPAQK 526 (662)
Q Consensus 457 p~~l~~L~~L~~L~Ls~N~L~~l~~l~~L~~L~~LdLs~N~Ls~l~~l~~~l~~l~~L~~L~Ls~N~l~~ 526 (662)
+. +..+++|+.|+|++|.|++++.+..+++|+.|+|++|+|+++. . +..+++|+.|+|++|++++
T Consensus 167 ~~-l~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~L~~N~l~~~~---~-l~~l~~L~~L~l~~N~i~~ 231 (308)
T 1h6u_A 167 TP-LANLSKLTTLKADDNKISDISPLASLPNLIEVHLKNNQISDVS---P-LANTSNLFIVTLTNQTITN 231 (308)
T ss_dssp GG-GTTCTTCCEEECCSSCCCCCGGGGGCTTCCEEECTTSCCCBCG---G-GTTCTTCCEEEEEEEEEEC
T ss_pred hh-hcCCCCCCEEECCCCccCcChhhcCCCCCCEEEccCCccCccc---c-ccCCCCCCEEEccCCeeec
Confidence 75 7788888888888888888877888888888888888888774 2 5677888888888888865
No 42
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.81 E-value=7.3e-19 Score=181.31 Aligned_cols=198 Identities=21% Similarity=0.252 Sum_probs=165.1
Q ss_pred CCCCCceeeCCccccchhhhHHHhhhccCCccEEEccCCCCCCCC-C-CCCCCCCCEEEccCCC-CcccCCCcCC--CCc
Q 035577 347 LNGSTAVKVDGKVTAGMEAVTKYISSLSASATTVQLSNHGLVVIP-F-LSAFVSLKVLNLSGNA-IVRITAGALP--RGL 421 (662)
Q Consensus 347 l~~L~~L~l~~~~~~~l~~l~~~l~~l~~sL~~L~Ls~N~L~~lp-~-l~~L~~L~~L~Ls~N~-L~~l~~~~~~--~~L 421 (662)
...|+.|++.++.+..+.. ..+..++. |+.|+|++|.|+.++ . |..+++|++|+|++|. ++.+++..+. ++|
T Consensus 31 ~~~l~~L~l~~n~i~~~~~--~~~~~~~~-L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~l~~~~~~~~~~l~~L 107 (285)
T 1ozn_A 31 PAASQRIFLHGNRISHVPA--ASFRACRN-LTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRL 107 (285)
T ss_dssp CTTCSEEECTTSCCCEECT--TTTTTCTT-CCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTCCCCCTTTTTTCTTC
T ss_pred CCCceEEEeeCCcCCccCH--HHcccCCC-CCEEECCCCccceeCHhhcCCccCCCEEeCCCCCCccccCHHHhcCCcCC
Confidence 3567777777765544321 23344444 999999999999774 3 9999999999999997 8888766665 899
Q ss_pred cEEEccCCCCCCCc--CCCCCCCCCEEeCcCCCCcccccc-ccCCCCCcEEEcCCCCCCCcc--cccCCCCCcEEECCCC
Q 035577 422 HILNLSKNNISTIE--GLRELTRLRVLDLSYNRILRIGHG-LASCSSLKELYLAGNKISEVE--GLHRLLKLTVLDLRFN 496 (662)
Q Consensus 422 ~~L~Ls~N~L~~lp--~l~~L~~L~~LdLs~N~Ls~Lp~~-l~~L~~L~~L~Ls~N~L~~l~--~l~~L~~L~~LdLs~N 496 (662)
++|+|++|.++.++ .+..+++|++|+|++|.++.++.. |..+++|++|+|++|.|+.++ .+..+++|+.|+|++|
T Consensus 108 ~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n 187 (285)
T 1ozn_A 108 HTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQN 187 (285)
T ss_dssp CEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSS
T ss_pred CEEECCCCcCCEECHhHhhCCcCCCEEECCCCcccccCHhHhccCCCccEEECCCCcccccCHHHhcCccccCEEECCCC
Confidence 99999999999874 588999999999999999988765 889999999999999999885 4889999999999999
Q ss_pred ccCccccchHhhhcCCCCcEEEccCCCCCCCCChHHHHHHHHhhCccCceeecCCCCCC
Q 035577 497 KISTAKCLGQLAANYNSLQAISLEGNPAQKNVGDEQLKKNLQSLLPHLVYFNWQPMKAS 555 (662)
Q Consensus 497 ~Ls~l~~l~~~l~~l~~L~~L~Ls~N~l~~~~~~~~l~~~l~~~l~~L~~Ld~~~~~~~ 555 (662)
.|+++. +..+..+++|+.|+|++|.+.+..+ .....+++|++|++..+.+.
T Consensus 188 ~l~~~~--~~~~~~l~~L~~L~l~~n~l~~~~~------~~~~~l~~L~~L~l~~N~~~ 238 (285)
T 1ozn_A 188 RVAHVH--PHAFRDLGRLMTLYLFANNLSALPT------EALAPLRALQYLRLNDNPWV 238 (285)
T ss_dssp CCCEEC--TTTTTTCTTCCEEECCSSCCSCCCH------HHHTTCTTCCEEECCSSCEE
T ss_pred cccccC--HhHccCcccccEeeCCCCcCCcCCH------HHcccCcccCEEeccCCCcc
Confidence 999874 6677899999999999999987322 23567899999999988754
No 43
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.81 E-value=9.7e-19 Score=201.13 Aligned_cols=220 Identities=21% Similarity=0.227 Sum_probs=186.7
Q ss_pred cccCcccccccCCCCCccCCCCCCCCCCceeecCCccCCCcchhhhcCCCCCCCCcccCCCCCCCCccCCcccCCCCCce
Q 035577 274 YSALAKDWVMPDENSVKKLQGESLHEQWDKLPSKHFKIKRIKEWVNDLQHCSPLEESDETSVSNDQVKRDPKVLNGSTAV 353 (662)
Q Consensus 274 l~~L~~~~L~ls~N~I~~L~~~s~l~~L~~L~l~~~si~~L~~~~~~L~~l~~L~~L~~l~ls~n~L~~~p~~l~~L~~L 353 (662)
+.+|.. |+++.|.++.++. .+.+|+.|++.+|.++.++. .+.. |..+.++.|.+..+|..+.+|+.|
T Consensus 80 l~~L~~--L~Ls~N~l~~lp~--~l~~L~~L~Ls~N~l~~l~~------~l~~---L~~L~L~~N~l~~lp~~l~~L~~L 146 (622)
T 3g06_A 80 PPELRT--LEVSGNQLTSLPV--LPPGLLELSIFSNPLTHLPA------LPSG---LCKLWIFGNQLTSLPVLPPGLQEL 146 (622)
T ss_dssp CTTCCE--EEECSCCCSCCCC--CCTTCCEEEECSCCCCCCCC------CCTT---CCEEECCSSCCSCCCCCCTTCCEE
T ss_pred CCCCCE--EEcCCCcCCcCCC--CCCCCCEEECcCCcCCCCCC------CCCC---cCEEECCCCCCCcCCCCCCCCCEE
Confidence 456666 8899999999987 78999999999999988874 2333 444556777888888778999999
Q ss_pred eeCCccccchhhhHHHhhhccCCccEEEccCCCCCCCCCCCCCCCCCEEEccCCCCcccCCCcCCCCccEEEccCCCCCC
Q 035577 354 KVDGKVTAGMEAVTKYISSLSASATTVQLSNHGLVVIPFLSAFVSLKVLNLSGNAIVRITAGALPRGLHILNLSKNNIST 433 (662)
Q Consensus 354 ~l~~~~~~~l~~l~~~l~~l~~sL~~L~Ls~N~L~~lp~l~~L~~L~~L~Ls~N~L~~l~~~~~~~~L~~L~Ls~N~L~~ 433 (662)
+++++.+..+.. .+..|+.|+|++|.|+.+| ..+++|+.|+|++|.|+.++. .+++|+.|++++|.|+.
T Consensus 147 ~Ls~N~l~~l~~-------~~~~L~~L~L~~N~l~~l~--~~~~~L~~L~Ls~N~l~~l~~--~~~~L~~L~L~~N~l~~ 215 (622)
T 3g06_A 147 SVSDNQLASLPA-------LPSELCKLWAYNNQLTSLP--MLPSGLQELSVSDNQLASLPT--LPSELYKLWAYNNRLTS 215 (622)
T ss_dssp ECCSSCCSCCCC-------CCTTCCEEECCSSCCSCCC--CCCTTCCEEECCSSCCSCCCC--CCTTCCEEECCSSCCSS
T ss_pred ECcCCcCCCcCC-------ccCCCCEEECCCCCCCCCc--ccCCCCcEEECCCCCCCCCCC--ccchhhEEECcCCcccc
Confidence 999977665432 3346999999999999999 567999999999999998874 34799999999999999
Q ss_pred CcCCCCCCCCCEEeCcCCCCccccccccCCCCCcEEEcCCCCCCCcccccCCCCCcEEECCCCccCccccchHhhhcCCC
Q 035577 434 IEGLRELTRLRVLDLSYNRILRIGHGLASCSSLKELYLAGNKISEVEGLHRLLKLTVLDLRFNKISTAKCLGQLAANYNS 513 (662)
Q Consensus 434 lp~l~~L~~L~~LdLs~N~Ls~Lp~~l~~L~~L~~L~Ls~N~L~~l~~l~~L~~L~~LdLs~N~Ls~l~~l~~~l~~l~~ 513 (662)
++.. +++|+.|+|++|.|+.+| ..+++|+.|+|++|.|+.+|. .+++|+.|+|++|.|+.+ |..+..+++
T Consensus 216 l~~~--~~~L~~L~Ls~N~L~~lp---~~l~~L~~L~Ls~N~L~~lp~--~~~~L~~L~Ls~N~L~~l---p~~l~~l~~ 285 (622)
T 3g06_A 216 LPAL--PSGLKELIVSGNRLTSLP---VLPSELKELMVSGNRLTSLPM--LPSGLLSLSVYRNQLTRL---PESLIHLSS 285 (622)
T ss_dssp CCCC--CTTCCEEECCSSCCSCCC---CCCTTCCEEECCSSCCSCCCC--CCTTCCEEECCSSCCCSC---CGGGGGSCT
T ss_pred cCCC--CCCCCEEEccCCccCcCC---CCCCcCcEEECCCCCCCcCCc--ccccCcEEeCCCCCCCcC---CHHHhhccc
Confidence 8853 589999999999999998 456899999999999999986 678999999999999976 566789999
Q ss_pred CcEEEccCCCCCCC
Q 035577 514 LQAISLEGNPAQKN 527 (662)
Q Consensus 514 L~~L~Ls~N~l~~~ 527 (662)
|+.|+|++|++++.
T Consensus 286 L~~L~L~~N~l~~~ 299 (622)
T 3g06_A 286 ETTVNLEGNPLSER 299 (622)
T ss_dssp TCEEECCSCCCCHH
T ss_pred cCEEEecCCCCCCc
Confidence 99999999999863
No 44
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.81 E-value=5.5e-19 Score=181.37 Aligned_cols=226 Identities=21% Similarity=0.227 Sum_probs=166.0
Q ss_pred ccCCCCCccCCCCCCCCCCceeecCCccCCCcchhhhcCCCCCCCCcccCCCCCCCCccCCcccCCCCCceeeCCccccc
Q 035577 283 MPDENSVKKLQGESLHEQWDKLPSKHFKIKRIKEWVNDLQHCSPLEESDETSVSNDQVKRDPKVLNGSTAVKVDGKVTAG 362 (662)
Q Consensus 283 ~ls~N~I~~L~~~s~l~~L~~L~l~~~si~~L~~~~~~L~~l~~L~~L~~l~ls~n~L~~~p~~l~~L~~L~l~~~~~~~ 362 (662)
......+..++. .....++.|++.+|.++.++.. .+..+ .+|+.|++.++....
T Consensus 13 ~c~~~~l~~ip~-~l~~~l~~L~ls~n~l~~~~~~--~~~~l-----------------------~~L~~L~l~~n~l~~ 66 (276)
T 2z62_A 13 QCMELNFYKIPD-NLPFSTKNLDLSFNPLRHLGSY--SFFSF-----------------------PELQVLDLSRCEIQT 66 (276)
T ss_dssp ECTTSCCSSCCS-SSCTTCCEEECTTCCCCEECTT--TTTTC-----------------------TTCSEEECTTCCCCE
T ss_pred EecCCCccccCC-CCCCCccEEECCCCcccccCHh--Hhccc-----------------------cCCcEEECCCCcCCc
Confidence 344555555554 1235688888888888776531 12222 233344444332222
Q ss_pred hhhhHHHhhhccCCccEEEccCCCCCCCCC--CCCCCCCCEEEccCCCCcccCCCcCC--CCccEEEccCCCCCC--Cc-
Q 035577 363 MEAVTKYISSLSASATTVQLSNHGLVVIPF--LSAFVSLKVLNLSGNAIVRITAGALP--RGLHILNLSKNNIST--IE- 435 (662)
Q Consensus 363 l~~l~~~l~~l~~sL~~L~Ls~N~L~~lp~--l~~L~~L~~L~Ls~N~L~~l~~~~~~--~~L~~L~Ls~N~L~~--lp- 435 (662)
+.. ..+..++ .|+.|+|++|.|+.++. |..+++|++|++++|.+..++...+. ++|++|+|++|.++. +|
T Consensus 67 ~~~--~~~~~l~-~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~ 143 (276)
T 2z62_A 67 IED--GAYQSLS-HLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPE 143 (276)
T ss_dssp ECT--TTTTTCT-TCCEEECTTCCCCEECTTTTTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCG
T ss_pred cCH--HHccCCc-CCCEEECCCCccCccChhhhcCCccccEEECCCCCccccCchhcccCCCCCEEECcCCccceecCch
Confidence 111 1223333 38999999999997763 89999999999999999988876555 899999999999997 44
Q ss_pred CCCCCCCCCEEeCcCCCCccccc-cccCCCCCc----EEEcCCCCCCCcc-cccCCCCCcEEECCCCccCccccchHhhh
Q 035577 436 GLRELTRLRVLDLSYNRILRIGH-GLASCSSLK----ELYLAGNKISEVE-GLHRLLKLTVLDLRFNKISTAKCLGQLAA 509 (662)
Q Consensus 436 ~l~~L~~L~~LdLs~N~Ls~Lp~-~l~~L~~L~----~L~Ls~N~L~~l~-~l~~L~~L~~LdLs~N~Ls~l~~l~~~l~ 509 (662)
.+..+++|++|+|++|.|+.++. .+..+.+|+ .|++++|.|+.++ ......+|+.|+|++|.|+.++ +..+.
T Consensus 144 ~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~l~l~L~ls~n~l~~~~~~~~~~~~L~~L~L~~n~l~~~~--~~~~~ 221 (276)
T 2z62_A 144 YFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLKELALDTNQLKSVP--DGIFD 221 (276)
T ss_dssp GGGGCTTCCEEECCSSCCCEECGGGGHHHHTCTTCCEEEECCSSCCCEECTTSSCSCCEEEEECCSSCCSCCC--TTTTT
T ss_pred hhccCCCCCEEECCCCCCCcCCHHHhhhhhhccccceeeecCCCcccccCccccCCCcccEEECCCCceeecC--HhHhc
Confidence 68999999999999999998764 466666666 8999999999884 4455568999999999999885 56678
Q ss_pred cCCCCcEEEccCCCCCCCCCh-HHHHHHHHh
Q 035577 510 NYNSLQAISLEGNPAQKNVGD-EQLKKNLQS 539 (662)
Q Consensus 510 ~l~~L~~L~Ls~N~l~~~~~~-~~l~~~l~~ 539 (662)
.+++|+.|+|++|+|.|.|+. .++..|+..
T Consensus 222 ~l~~L~~L~l~~N~~~c~c~~l~~l~~~~~~ 252 (276)
T 2z62_A 222 RLTSLQKIWLHTNPWDCSCPRIDYLSRWLNK 252 (276)
T ss_dssp TCCSCCEEECCSSCBCCCTTTTHHHHHHHHH
T ss_pred ccccccEEEccCCcccccCCchHHHHHHHHh
Confidence 899999999999999999974 344455543
No 45
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.80 E-value=7.6e-19 Score=193.51 Aligned_cols=234 Identities=21% Similarity=0.239 Sum_probs=178.4
Q ss_pred CceeecCCccCCCcchhhhcCCCCCCCCcccCCCCCCCCccCC----cccCCCCCceeeCCccccchhhhHHHhhhccCC
Q 035577 301 WDKLPSKHFKIKRIKEWVNDLQHCSPLEESDETSVSNDQVKRD----PKVLNGSTAVKVDGKVTAGMEAVTKYISSLSAS 376 (662)
Q Consensus 301 L~~L~l~~~si~~L~~~~~~L~~l~~L~~L~~l~ls~n~L~~~----p~~l~~L~~L~l~~~~~~~l~~l~~~l~~l~~s 376 (662)
+..+...+..++.+|.. +. ..++. ++++.+.+..+ ...+.+|+.|++.++.+..+. +..+..++.
T Consensus 56 ~~~v~c~~~~l~~iP~~---~~--~~l~~---L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~--~~~~~~l~~- 124 (452)
T 3zyi_A 56 FSKVVCTRRGLSEVPQG---IP--SNTRY---LNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIE--VGAFNGLAS- 124 (452)
T ss_dssp SCEEECCSSCCSSCCSC---CC--TTCSE---EECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEEC--TTTTTTCTT-
T ss_pred CcEEEECCCCcCccCCC---CC--CCccE---EECcCCcCceECHHHcCCCCCCCEEECCCCccCCcC--hhhccCccc-
Confidence 44677777777777642 21 33443 44555555443 234677888888887655443 133444554
Q ss_pred ccEEEccCCCCCCCCC--CCCCCCCCEEEccCCCCcccCCCcCC--CCccEEEccC-CCCCCCc--CCCCCCCCCEEeCc
Q 035577 377 ATTVQLSNHGLVVIPF--LSAFVSLKVLNLSGNAIVRITAGALP--RGLHILNLSK-NNISTIE--GLRELTRLRVLDLS 449 (662)
Q Consensus 377 L~~L~Ls~N~L~~lp~--l~~L~~L~~L~Ls~N~L~~l~~~~~~--~~L~~L~Ls~-N~L~~lp--~l~~L~~L~~LdLs 449 (662)
|+.|+|++|.|+.+|. |..+++|++|+|++|.|+.++...|. ++|++|+|++ |.+..++ .|..+++|++|+|+
T Consensus 125 L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~ 204 (452)
T 3zyi_A 125 LNTLELFDNWLTVIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLG 204 (452)
T ss_dssp CCEEECCSSCCSBCCTTTSSSCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECT
T ss_pred CCEEECCCCcCCccChhhhcccCCCCEEECCCCCcceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECC
Confidence 8999999999998875 88899999999999999988877766 7899999998 5666665 58889999999999
Q ss_pred CCCCccccccccCCCCCcEEEcCCCCCCCcc--cccCCCCCcEEECCCCccCccccchHhhhcCCCCcEEEccCCCCCCC
Q 035577 450 YNRILRIGHGLASCSSLKELYLAGNKISEVE--GLHRLLKLTVLDLRFNKISTAKCLGQLAANYNSLQAISLEGNPAQKN 527 (662)
Q Consensus 450 ~N~Ls~Lp~~l~~L~~L~~L~Ls~N~L~~l~--~l~~L~~L~~LdLs~N~Ls~l~~l~~~l~~l~~L~~L~Ls~N~l~~~ 527 (662)
+|.|+.+| .+..+++|+.|+|++|.|++++ .|..+++|+.|+|++|+|+.+. +..+..+++|+.|+|++|.++..
T Consensus 205 ~n~l~~~~-~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~--~~~~~~l~~L~~L~L~~N~l~~~ 281 (452)
T 3zyi_A 205 MCNIKDMP-NLTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIE--RNAFDGLASLVELNLAHNNLSSL 281 (452)
T ss_dssp TSCCSSCC-CCTTCTTCCEEECTTSCCSEECGGGGTTCTTCCEEECTTSCCCEEC--TTTTTTCTTCCEEECCSSCCSCC
T ss_pred CCcccccc-cccccccccEEECcCCcCcccCcccccCccCCCEEEeCCCcCceEC--HHHhcCCCCCCEEECCCCcCCcc
Confidence 99999887 5888899999999999998873 6888999999999999999875 66678889999999999999864
Q ss_pred CChHHHHHHHHhhCccCceeecCCCCC
Q 035577 528 VGDEQLKKNLQSLLPHLVYFNWQPMKA 554 (662)
Q Consensus 528 ~~~~~l~~~l~~~l~~L~~Ld~~~~~~ 554 (662)
.+. ....+++|+.|++..+.+
T Consensus 282 ~~~------~~~~l~~L~~L~L~~Np~ 302 (452)
T 3zyi_A 282 PHD------LFTPLRYLVELHLHHNPW 302 (452)
T ss_dssp CTT------SSTTCTTCCEEECCSSCE
T ss_pred ChH------HhccccCCCEEEccCCCc
Confidence 332 235678899999888764
No 46
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.80 E-value=1.7e-18 Score=177.76 Aligned_cols=173 Identities=20% Similarity=0.279 Sum_probs=152.5
Q ss_pred cCCccEEEccCCCCCCCCC--CCCCCCCCEEEccCCCCcccCCCcCC--CCccEEEccCCCCCCCc--CCCCCCCCCEEe
Q 035577 374 SASATTVQLSNHGLVVIPF--LSAFVSLKVLNLSGNAIVRITAGALP--RGLHILNLSKNNISTIE--GLRELTRLRVLD 447 (662)
Q Consensus 374 ~~sL~~L~Ls~N~L~~lp~--l~~L~~L~~L~Ls~N~L~~l~~~~~~--~~L~~L~Ls~N~L~~lp--~l~~L~~L~~Ld 447 (662)
+..++.|+|++|.|+.++. |..+++|++|+|++|.|+.++...|. ++|++|+|++|.|+.++ .+..+++|++|+
T Consensus 36 ~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ 115 (270)
T 2o6q_A 36 PADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTDNKLQALPIGVFDQLVNLAELR 115 (270)
T ss_dssp CTTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEECCSSCCCCCCTTTTTTCSSCCEEE
T ss_pred CCCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEECCCCcCCcCCHhHcccccCCCEEE
Confidence 3458999999999998875 99999999999999999999988765 89999999999999986 578999999999
Q ss_pred CcCCCCcccccc-ccCCCCCcEEEcCCCCCCCcc--cccCCCCCcEEECCCCccCccccchHhhhcCCCCcEEEccCCCC
Q 035577 448 LSYNRILRIGHG-LASCSSLKELYLAGNKISEVE--GLHRLLKLTVLDLRFNKISTAKCLGQLAANYNSLQAISLEGNPA 524 (662)
Q Consensus 448 Ls~N~Ls~Lp~~-l~~L~~L~~L~Ls~N~L~~l~--~l~~L~~L~~LdLs~N~Ls~l~~l~~~l~~l~~L~~L~Ls~N~l 524 (662)
|++|.|+.++.. |..+++|++|+|++|.|+.++ .+..+++|+.|+|++|.|+.++ +..+..+++|+.|+|++|.+
T Consensus 116 l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~--~~~~~~l~~L~~L~L~~N~l 193 (270)
T 2o6q_A 116 LDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQLKRVP--EGAFDKLTELKTLKLDNNQL 193 (270)
T ss_dssp CCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCC--TTTTTTCTTCCEEECCSSCC
T ss_pred CCCCccCeeCHHHhCcCcCCCEEECCCCcCCccCHhHccCCcccceeEecCCcCcEeC--hhHhccCCCcCEEECCCCcC
Confidence 999999988765 889999999999999999986 3889999999999999999985 55678899999999999999
Q ss_pred CCCCChHHHHHHHHhhCccCceeecCCCCC
Q 035577 525 QKNVGDEQLKKNLQSLLPHLVYFNWQPMKA 554 (662)
Q Consensus 525 ~~~~~~~~l~~~l~~~l~~L~~Ld~~~~~~ 554 (662)
+...+. ....+++|++|++..+.+
T Consensus 194 ~~~~~~------~~~~l~~L~~L~l~~N~~ 217 (270)
T 2o6q_A 194 KRVPEG------AFDSLEKLKMLQLQENPW 217 (270)
T ss_dssp SCCCTT------TTTTCTTCCEEECCSSCB
T ss_pred CcCCHH------HhccccCCCEEEecCCCe
Confidence 864332 345688999999998864
No 47
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.80 E-value=5.7e-19 Score=185.30 Aligned_cols=198 Identities=24% Similarity=0.293 Sum_probs=168.1
Q ss_pred CCCCCceeeCCccccchhhhHHHhhhccCCccEEEccCCCCCCCCCCCCCCCCCEEEccCCCCcccCCCcCCCCccEEEc
Q 035577 347 LNGSTAVKVDGKVTAGMEAVTKYISSLSASATTVQLSNHGLVVIPFLSAFVSLKVLNLSGNAIVRITAGALPRGLHILNL 426 (662)
Q Consensus 347 l~~L~~L~l~~~~~~~l~~l~~~l~~l~~sL~~L~Ls~N~L~~lp~l~~L~~L~~L~Ls~N~L~~l~~~~~~~~L~~L~L 426 (662)
+.+|+.|++.++....+.. +..++. |+.|+|++|.|+.++.+..+++|++|+|++|.|+.++.....++|++|+|
T Consensus 40 l~~L~~L~l~~~~i~~l~~----~~~l~~-L~~L~L~~n~i~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~l~~L~~L~l 114 (308)
T 1h6u_A 40 LDGITTLSAFGTGVTTIEG----VQYLNN-LIGLELKDNQITDLAPLKNLTKITELELSGNPLKNVSAIAGLQSIKTLDL 114 (308)
T ss_dssp HHTCCEEECTTSCCCCCTT----GGGCTT-CCEEECCSSCCCCCGGGTTCCSCCEEECCSCCCSCCGGGTTCTTCCEEEC
T ss_pred cCCcCEEEeeCCCccCchh----hhccCC-CCEEEccCCcCCCChhHccCCCCCEEEccCCcCCCchhhcCCCCCCEEEC
Confidence 5677888887766555432 444554 99999999999998889999999999999999998864333389999999
Q ss_pred cCCCCCCCcCCCCCCCCCEEeCcCCCCccccccccCCCCCcEEEcCCCCCCCcccccCCCCCcEEECCCCccCccccchH
Q 035577 427 SKNNISTIEGLRELTRLRVLDLSYNRILRIGHGLASCSSLKELYLAGNKISEVEGLHRLLKLTVLDLRFNKISTAKCLGQ 506 (662)
Q Consensus 427 s~N~L~~lp~l~~L~~L~~LdLs~N~Ls~Lp~~l~~L~~L~~L~Ls~N~L~~l~~l~~L~~L~~LdLs~N~Ls~l~~l~~ 506 (662)
++|.|+.++.+..+++|++|++++|.++.++. +..+++|+.|+|++|.|++++.+..+++|+.|+|++|.|++++.
T Consensus 115 ~~n~l~~~~~l~~l~~L~~L~l~~n~l~~~~~-l~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~l~~n~l~~~~~--- 190 (308)
T 1h6u_A 115 TSTQITDVTPLAGLSNLQVLYLDLNQITNISP-LAGLTNLQYLSIGNAQVSDLTPLANLSKLTTLKADDNKISDISP--- 190 (308)
T ss_dssp TTSCCCCCGGGTTCTTCCEEECCSSCCCCCGG-GGGCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCCCGG---
T ss_pred CCCCCCCchhhcCCCCCCEEECCCCccCcCcc-ccCCCCccEEEccCCcCCCChhhcCCCCCCEEECCCCccCcChh---
Confidence 99999999889999999999999999998875 88999999999999999999889999999999999999998852
Q ss_pred hhhcCCCCcEEEccCCCCCCCCChHHHHHHHHhhCccCceeecCCCCCCccccccc
Q 035577 507 LAANYNSLQAISLEGNPAQKNVGDEQLKKNLQSLLPHLVYFNWQPMKASTLKDASD 562 (662)
Q Consensus 507 ~l~~l~~L~~L~Ls~N~l~~~~~~~~l~~~l~~~l~~L~~Ld~~~~~~~~l~~~~~ 562 (662)
+..+++|+.|+|++|.+.+..+ ...+++|++|++..+.+...+....
T Consensus 191 -l~~l~~L~~L~L~~N~l~~~~~--------l~~l~~L~~L~l~~N~i~~~~~~~~ 237 (308)
T 1h6u_A 191 -LASLPNLIEVHLKNNQISDVSP--------LANTSNLFIVTLTNQTITNQPVFYN 237 (308)
T ss_dssp -GGGCTTCCEEECTTSCCCBCGG--------GTTCTTCCEEEEEEEEEECCCEECC
T ss_pred -hcCCCCCCEEEccCCccCcccc--------ccCCCCCCEEEccCCeeecCCeeec
Confidence 5789999999999999987532 4678999999999888766554433
No 48
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.80 E-value=9.9e-19 Score=175.70 Aligned_cols=172 Identities=25% Similarity=0.328 Sum_probs=151.6
Q ss_pred ccEEEccCCCCCCCCCCCCCCCCCEEEccCCCCcccCCCcCC--CCccEEEccCCCCCCCc--CCCCCCCCCEEeCcCCC
Q 035577 377 ATTVQLSNHGLVVIPFLSAFVSLKVLNLSGNAIVRITAGALP--RGLHILNLSKNNISTIE--GLRELTRLRVLDLSYNR 452 (662)
Q Consensus 377 L~~L~Ls~N~L~~lp~l~~L~~L~~L~Ls~N~L~~l~~~~~~--~~L~~L~Ls~N~L~~lp--~l~~L~~L~~LdLs~N~ 452 (662)
.+.+++++++++.+|. .-.++|++|+|++|.|+.+++..|. ++|++|+|++|+|+.++ .|..+++|++|+|++|.
T Consensus 21 ~~~v~c~~~~l~~ip~-~~~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~ 99 (229)
T 3e6j_A 21 GTTVDCRSKRHASVPA-GIPTNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTNQ 99 (229)
T ss_dssp TTEEECTTSCCSSCCS-CCCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred CCEeEccCCCcCccCC-CCCCCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEECCCCc
Confidence 5689999999999996 2248999999999999998777665 89999999999999987 37899999999999999
Q ss_pred Ccccccc-ccCCCCCcEEEcCCCCCCCcc-cccCCCCCcEEECCCCccCccccchHhhhcCCCCcEEEccCCCCCCCCC-
Q 035577 453 ILRIGHG-LASCSSLKELYLAGNKISEVE-GLHRLLKLTVLDLRFNKISTAKCLGQLAANYNSLQAISLEGNPAQKNVG- 529 (662)
Q Consensus 453 Ls~Lp~~-l~~L~~L~~L~Ls~N~L~~l~-~l~~L~~L~~LdLs~N~Ls~l~~l~~~l~~l~~L~~L~Ls~N~l~~~~~- 529 (662)
|+.+|.. |..+++|++|+|++|+|+.+| .+..+++|+.|+|++|+|+.++ +..+..+++|+.|+|.+|++.|.|+
T Consensus 100 l~~l~~~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~L~~N~l~~~~--~~~~~~l~~L~~L~l~~N~~~c~c~~ 177 (229)
T 3e6j_A 100 LTVLPSAVFDRLVHLKELFMCCNKLTELPRGIERLTHLTHLALDQNQLKSIP--HGAFDRLSSLTHAYLFGNPWDCECRD 177 (229)
T ss_dssp CCCCCTTTTTTCTTCCEEECCSSCCCSCCTTGGGCTTCSEEECCSSCCCCCC--TTTTTTCTTCCEEECTTSCBCTTBGG
T ss_pred CCccChhHhCcchhhCeEeccCCcccccCcccccCCCCCEEECCCCcCCccC--HHHHhCCCCCCEEEeeCCCccCCcch
Confidence 9999866 789999999999999999995 7889999999999999999885 4667889999999999999999996
Q ss_pred hHHHHHHHHhhCccCceeecCC
Q 035577 530 DEQLKKNLQSLLPHLVYFNWQP 551 (662)
Q Consensus 530 ~~~l~~~l~~~l~~L~~Ld~~~ 551 (662)
...+..|+....+.+..++...
T Consensus 178 ~~~l~~~~~~~~~~~~~~~g~~ 199 (229)
T 3e6j_A 178 IMYLRNWVADHTSIAMRWDGKA 199 (229)
T ss_dssp GHHHHHHHHHCGGGEEEESSSE
T ss_pred hHHHHHHHHhCccccccccCcc
Confidence 6677888888777777766543
No 49
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.80 E-value=1.7e-18 Score=199.69 Aligned_cols=265 Identities=20% Similarity=0.232 Sum_probs=169.6
Q ss_pred cccCcccccccCCCCCccCCC--CCCCCCCceeecCCccCC--Ccchh-hhcCCCCCCCCcccCCCCCCCCccCC----c
Q 035577 274 YSALAKDWVMPDENSVKKLQG--ESLHEQWDKLPSKHFKIK--RIKEW-VNDLQHCSPLEESDETSVSNDQVKRD----P 344 (662)
Q Consensus 274 l~~L~~~~L~ls~N~I~~L~~--~s~l~~L~~L~l~~~si~--~L~~~-~~~L~~l~~L~~L~~l~ls~n~L~~~----p 344 (662)
+..|.. ++++.|.+..+.. +..+++|+.|++.+|.+. .++.. +..+. ...|+ .++++.+.+... .
T Consensus 328 l~~L~~--L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~l~~~~f~~~~-~~~L~---~L~L~~n~l~~~~~~~~ 401 (680)
T 1ziw_A 328 LKCLEH--LNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLA-HSPLH---ILNLTKNKISKIESDAF 401 (680)
T ss_dssp CTTCCE--EECCSCCBCCCCTTTTTTCTTCCEEECTTCBSCCCEECTTTTGGGT-TSCCC---EEECTTSCCCEECTTTT
T ss_pred CCCCCE--EECCCCccCCCChhHhccccCCcEEECCCCchhhhhcchhhhcccc-cCcCc---eEECCCCCCCeEChhhh
Confidence 344554 6677777776655 566677777777766532 22211 11110 11222 233444444333 2
Q ss_pred ccCCCCCceeeCCccccc-hhhhHHHhhhccCCccEEEccCCCCCCCCC--CCCCCCCCEEEccCCCCcccC--CCcCC-
Q 035577 345 KVLNGSTAVKVDGKVTAG-MEAVTKYISSLSASATTVQLSNHGLVVIPF--LSAFVSLKVLNLSGNAIVRIT--AGALP- 418 (662)
Q Consensus 345 ~~l~~L~~L~l~~~~~~~-l~~l~~~l~~l~~sL~~L~Ls~N~L~~lp~--l~~L~~L~~L~Ls~N~L~~l~--~~~~~- 418 (662)
..+.+|+.|++.++.... +. ...+..++. |+.|+|++|.+..++. |..+++|+.|++++|.+..+. +..+.
T Consensus 402 ~~l~~L~~L~L~~N~l~~~~~--~~~~~~l~~-L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~p~~~~~ 478 (680)
T 1ziw_A 402 SWLGHLEVLDLGLNEIGQELT--GQEWRGLEN-IFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQP 478 (680)
T ss_dssp TTCTTCCEEECCSSCCEEECC--SGGGTTCTT-CCEEECCSCSEEECCTTTTTTCTTCCEEECTTSCCBCTTCSSCTTTT
T ss_pred hCCCCCCEEeCCCCcCccccC--cccccCccc-ccEEecCCCCcceeChhhhhcCcccccchhccccccccccCCccccc
Confidence 235677788887765432 11 022333443 8888888888876653 777888888888888775332 22232
Q ss_pred -CCccEEEccCCCCCCCc--CCCCCCCCCEEeCcCCCCccccc---------cccCCCCCcEEEcCCCCCCCcc--cccC
Q 035577 419 -RGLHILNLSKNNISTIE--GLRELTRLRVLDLSYNRILRIGH---------GLASCSSLKELYLAGNKISEVE--GLHR 484 (662)
Q Consensus 419 -~~L~~L~Ls~N~L~~lp--~l~~L~~L~~LdLs~N~Ls~Lp~---------~l~~L~~L~~L~Ls~N~L~~l~--~l~~ 484 (662)
++|++|+|++|+|+.++ .+..+++|++|+|++|.++.++. .|..+++|++|+|++|+|+.++ .|..
T Consensus 479 l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~ 558 (680)
T 1ziw_A 479 LRNLTILDLSNNNIANINDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFDEIPVEVFKD 558 (680)
T ss_dssp CTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCGGGGSTTSTTSCCCTTTTCTTCCEEECCSSCCCCCCTTTTTT
T ss_pred CCCCCEEECCCCCCCcCChhhhccccccCEEeCCCCCccccchhhccCCcchhhcCCCCCCEEECCCCCCCCCCHHHccc
Confidence 67888888888888775 37788888888888888876532 2677788888888888888775 4778
Q ss_pred CCCCcEEECCCCccCccccchHhhhcCCCCcEEEccCCCCCCCCChHHHHHHHHhhCccCceeecCCCCC
Q 035577 485 LLKLTVLDLRFNKISTAKCLGQLAANYNSLQAISLEGNPAQKNVGDEQLKKNLQSLLPHLVYFNWQPMKA 554 (662)
Q Consensus 485 L~~L~~LdLs~N~Ls~l~~l~~~l~~l~~L~~L~Ls~N~l~~~~~~~~l~~~l~~~l~~L~~Ld~~~~~~ 554 (662)
+++|+.|+|++|+|+.++ +..+..+++|+.|+|++|.+++..+. .+ ...+++|+.+++..+.+
T Consensus 559 l~~L~~L~Ls~N~l~~l~--~~~~~~l~~L~~L~L~~N~l~~~~~~-~~----~~~~~~L~~l~l~~N~~ 621 (680)
T 1ziw_A 559 LFELKIIDLGLNNLNTLP--ASVFNNQVSLKSLNLQKNLITSVEKK-VF----GPAFRNLTELDMRFNPF 621 (680)
T ss_dssp CTTCCEEECCSSCCCCCC--TTTTTTCTTCCEEECTTSCCCBCCHH-HH----HHHHTTCSEEECTTCCC
T ss_pred ccCcceeECCCCCCCcCC--HhHhCCCCCCCEEECCCCcCCccChh-Hh----cccccccCEEEccCCCc
Confidence 888888888888888775 45567778888888888888764321 11 12467788888877764
No 50
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.80 E-value=5.4e-19 Score=197.27 Aligned_cols=158 Identities=23% Similarity=0.229 Sum_probs=78.1
Q ss_pred ccEEEccCCCCCC-CCC-CCCCCCCCEEEccCCCCcccCC--CcCC--CCccEEEccCCCCCC-Cc--CCCCCCCCCEEe
Q 035577 377 ATTVQLSNHGLVV-IPF-LSAFVSLKVLNLSGNAIVRITA--GALP--RGLHILNLSKNNIST-IE--GLRELTRLRVLD 447 (662)
Q Consensus 377 L~~L~Ls~N~L~~-lp~-l~~L~~L~~L~Ls~N~L~~l~~--~~~~--~~L~~L~Ls~N~L~~-lp--~l~~L~~L~~Ld 447 (662)
|++|+|++|.++. +|. +..+++|++|+|++|.|+.++. ..+. ++|++|+|++|.++. +| .+..+++|++|+
T Consensus 326 L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~l~~L~~L~Ls~N~l~~~l~~~~~~~l~~L~~L~ 405 (520)
T 2z7x_B 326 FLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKSLLSLN 405 (520)
T ss_dssp CCEEECCSSCCCTTTTTTCCCCSSCCEEECCSSCCCBHHHHHHHHTTCTTCCEEECCSSCCBCCGGGCSCCCCTTCCEEE
T ss_pred ccEEEeECCccChhhhhhhccCCCCCEEEccCCccCccccchHHHhhCCCCCEEECCCCcCCcccccchhccCccCCEEE
Confidence 4455555555543 222 4555555555555555543321 1111 455555555555554 43 244455555555
Q ss_pred CcCCCCc-cccccccCCCCCcEEEcCCCCCCCcc-cccCCCCCcEEECCCCccCccccchHhhhcCCCCcEEEccCCCCC
Q 035577 448 LSYNRIL-RIGHGLASCSSLKELYLAGNKISEVE-GLHRLLKLTVLDLRFNKISTAKCLGQLAANYNSLQAISLEGNPAQ 525 (662)
Q Consensus 448 Ls~N~Ls-~Lp~~l~~L~~L~~L~Ls~N~L~~l~-~l~~L~~L~~LdLs~N~Ls~l~~l~~~l~~l~~L~~L~Ls~N~l~ 525 (662)
+++|.++ .+|..+. ++|+.|+|++|+|+.+| .+..+++|+.|+|++|+|+.++ +..+..+++|+.|+|++|++.
T Consensus 406 Ls~N~l~~~~~~~l~--~~L~~L~Ls~N~l~~ip~~~~~l~~L~~L~L~~N~l~~l~--~~~~~~l~~L~~L~l~~N~~~ 481 (520)
T 2z7x_B 406 MSSNILTDTIFRCLP--PRIKVLDLHSNKIKSIPKQVVKLEALQELNVASNQLKSVP--DGIFDRLTSLQKIWLHTNPWD 481 (520)
T ss_dssp CCSSCCCGGGGGSCC--TTCCEEECCSSCCCCCCGGGGGCTTCCEEECCSSCCCCCC--TTTTTTCTTCCEEECCSSCBC
T ss_pred CcCCCCCcchhhhhc--ccCCEEECCCCcccccchhhhcCCCCCEEECCCCcCCccC--HHHhccCCcccEEECcCCCCc
Confidence 5555553 2232221 45555555555555554 3445556666666666665543 123455556666666666666
Q ss_pred CCCChHHH-HHHHH
Q 035577 526 KNVGDEQL-KKNLQ 538 (662)
Q Consensus 526 ~~~~~~~l-~~~l~ 538 (662)
|.|+..++ ..|+.
T Consensus 482 c~c~~~~~~~~~~~ 495 (520)
T 2z7x_B 482 CSCPRIDYLSRWLN 495 (520)
T ss_dssp CCHHHHHHHHHHHH
T ss_pred ccCCchHHHHHHHH
Confidence 65555544 44443
No 51
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=99.80 E-value=5.3e-19 Score=207.82 Aligned_cols=198 Identities=23% Similarity=0.243 Sum_probs=141.7
Q ss_pred CCCCCceeeCCccccchhhhHHHhhhccCCccEEEccCCCCC-CCCC-CCCCCCCCEEEccCCCCcccCCCcCC--CCcc
Q 035577 347 LNGSTAVKVDGKVTAGMEAVTKYISSLSASATTVQLSNHGLV-VIPF-LSAFVSLKVLNLSGNAIVRITAGALP--RGLH 422 (662)
Q Consensus 347 l~~L~~L~l~~~~~~~l~~l~~~l~~l~~sL~~L~Ls~N~L~-~lp~-l~~L~~L~~L~Ls~N~L~~l~~~~~~--~~L~ 422 (662)
+.+|+.|++.++...+ ..+..+..++. |+.|+|++|.++ .+|. +..+++|++|+|++|.++...+..+. ++|+
T Consensus 417 l~~L~~L~Ls~N~l~~--~~p~~l~~l~~-L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~ 493 (768)
T 3rgz_A 417 CSELVSLHLSFNYLSG--TIPSSLGSLSK-LRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLN 493 (768)
T ss_dssp CTTCCEEECCSSEEES--CCCGGGGGCTT-CCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCC
T ss_pred CCCCCEEECcCCcccC--cccHHHhcCCC-CCEEECCCCcccCcCCHHHcCCCCceEEEecCCcccCcCCHHHhcCCCCC
Confidence 4566666666644332 12334444543 778888888777 4554 77778888888888887754444443 6788
Q ss_pred EEEccCCCCCC-Cc-CCCCCCCCCEEeCcCCCCc-cccccccCCCCCcEEEcCCCCCCC-cc------------------
Q 035577 423 ILNLSKNNIST-IE-GLRELTRLRVLDLSYNRIL-RIGHGLASCSSLKELYLAGNKISE-VE------------------ 480 (662)
Q Consensus 423 ~L~Ls~N~L~~-lp-~l~~L~~L~~LdLs~N~Ls-~Lp~~l~~L~~L~~L~Ls~N~L~~-l~------------------ 480 (662)
+|+|++|++++ +| .+..+++|++|+|++|.++ .+|..++.+++|+.|+|++|.+++ +|
T Consensus 494 ~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~~~~~~~~~ 573 (768)
T 3rgz_A 494 WISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGK 573 (768)
T ss_dssp EEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEEECCGGGGGCTTCCEEECCSSEEESBCCGGGGTTTTCBCCSTTCSC
T ss_pred EEEccCCccCCcCChHHhcCCCCCEEECCCCcccCcCCHHHcCCCCCCEEECCCCccCCcCChHHhcccchhhhhccccc
Confidence 88888888874 44 5777888888888888887 677778888888888888887652 12
Q ss_pred -----------------------------------------------------cccCCCCCcEEECCCCccCccccchHh
Q 035577 481 -----------------------------------------------------GLHRLLKLTVLDLRFNKISTAKCLGQL 507 (662)
Q Consensus 481 -----------------------------------------------------~l~~L~~L~~LdLs~N~Ls~l~~l~~~ 507 (662)
.+..+++|+.|+|++|++++. +|..
T Consensus 574 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~g~~~~~~~~l~~L~~LdLs~N~l~g~--ip~~ 651 (768)
T 3rgz_A 574 RYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGY--IPKE 651 (768)
T ss_dssp EEEEEECCSCCTTCCSSEEEEECTTCCGGGGGGGGGTCCSCTTSCEEEEECCCSCSSSBCCCEEECCSSCCBSC--CCGG
T ss_pred cccccccccccccccccccccccccccchhhhccccccccccccceecccCchhhhccccccEEECcCCccccc--CCHH
Confidence 123356788888888888865 3677
Q ss_pred hhcCCCCcEEEccCCCCCCCCChHHHHHHHHhhCccCceeecCCCCCC
Q 035577 508 AANYNSLQAISLEGNPAQKNVGDEQLKKNLQSLLPHLVYFNWQPMKAS 555 (662)
Q Consensus 508 l~~l~~L~~L~Ls~N~l~~~~~~~~l~~~l~~~l~~L~~Ld~~~~~~~ 555 (662)
++.++.|+.|+|++|.+++.+|.. +..++.|+.||++.+.+.
T Consensus 652 l~~l~~L~~L~Ls~N~l~g~ip~~------l~~L~~L~~LdLs~N~l~ 693 (768)
T 3rgz_A 652 IGSMPYLFILNLGHNDISGSIPDE------VGDLRGLNILDLSSNKLD 693 (768)
T ss_dssp GGGCTTCCEEECCSSCCCSCCCGG------GGGCTTCCEEECCSSCCE
T ss_pred HhccccCCEEeCcCCccCCCCChH------HhCCCCCCEEECCCCccc
Confidence 788888888888888888887753 467788888888888775
No 52
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.80 E-value=2.6e-18 Score=198.02 Aligned_cols=176 Identities=20% Similarity=0.194 Sum_probs=119.4
Q ss_pred ccEEEccCCCCC-CCCC--CCCCCCCCEEEccCCCCcccCCCcCC--CCccEEEccCCCCCC---Cc-CCCCCCCCCEEe
Q 035577 377 ATTVQLSNHGLV-VIPF--LSAFVSLKVLNLSGNAIVRITAGALP--RGLHILNLSKNNIST---IE-GLRELTRLRVLD 447 (662)
Q Consensus 377 L~~L~Ls~N~L~-~lp~--l~~L~~L~~L~Ls~N~L~~l~~~~~~--~~L~~L~Ls~N~L~~---lp-~l~~L~~L~~Ld 447 (662)
|+.|+|++|.+. .+|. +..+++|++|+|++|.+..++...|. +.|+.|++++|.++. +| .+..+++|++|+
T Consensus 407 L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~p~~~~~l~~L~~L~ 486 (680)
T 1ziw_A 407 LEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILD 486 (680)
T ss_dssp CCEEECCSSCCEEECCSGGGTTCTTCCEEECCSCSEEECCTTTTTTCTTCCEEECTTSCCBCTTCSSCTTTTCTTCCEEE
T ss_pred CCEEeCCCCcCccccCcccccCcccccEEecCCCCcceeChhhhhcCcccccchhccccccccccCCcccccCCCCCEEE
Confidence 445555555443 2331 44555555555555555444444443 566666666666543 23 577788888888
Q ss_pred CcCCCCcccccc-ccCCCCCcEEEcCCCCCCCcc----------cccCCCCCcEEECCCCccCccccchHhhhcCCCCcE
Q 035577 448 LSYNRILRIGHG-LASCSSLKELYLAGNKISEVE----------GLHRLLKLTVLDLRFNKISTAKCLGQLAANYNSLQA 516 (662)
Q Consensus 448 Ls~N~Ls~Lp~~-l~~L~~L~~L~Ls~N~L~~l~----------~l~~L~~L~~LdLs~N~Ls~l~~l~~~l~~l~~L~~ 516 (662)
|++|.|+.+|.. |..+++|++|+|++|.|+.++ .+..+++|+.|+|++|+|+.++ +..|..+++|+.
T Consensus 487 Ls~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~i~--~~~~~~l~~L~~ 564 (680)
T 1ziw_A 487 LSNNNIANINDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFDEIP--VEVFKDLFELKI 564 (680)
T ss_dssp CCSSCCCCCCTTTTTTCTTCCEEECCSSCCGGGGSTTSTTSCCCTTTTCTTCCEEECCSSCCCCCC--TTTTTTCTTCCE
T ss_pred CCCCCCCcCChhhhccccccCEEeCCCCCccccchhhccCCcchhhcCCCCCCEEECCCCCCCCCC--HHHcccccCcce
Confidence 888888877655 778888888888888887652 2677888888888888888774 455778888899
Q ss_pred EEccCCCCCCCCChHHHHHHHHhhCccCceeecCCCCCCccccc
Q 035577 517 ISLEGNPAQKNVGDEQLKKNLQSLLPHLVYFNWQPMKASTLKDA 560 (662)
Q Consensus 517 L~Ls~N~l~~~~~~~~l~~~l~~~l~~L~~Ld~~~~~~~~l~~~ 560 (662)
|+|++|.++...+. ....+++|+.|++..+.+..+...
T Consensus 565 L~Ls~N~l~~l~~~------~~~~l~~L~~L~L~~N~l~~~~~~ 602 (680)
T 1ziw_A 565 IDLGLNNLNTLPAS------VFNNQVSLKSLNLQKNLITSVEKK 602 (680)
T ss_dssp EECCSSCCCCCCTT------TTTTCTTCCEEECTTSCCCBCCHH
T ss_pred eECCCCCCCcCCHh------HhCCCCCCCEEECCCCcCCccChh
Confidence 99988888853332 345678899999988888776543
No 53
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.80 E-value=3.6e-19 Score=203.34 Aligned_cols=234 Identities=21% Similarity=0.243 Sum_probs=180.6
Q ss_pred CcccCcccccccCCCCCccCCC--CCCCCCCceeecCCccCCCcchhhhcCCCCCCCCcccCCCCCCCCccCCc-ccCCC
Q 035577 273 NYSALAKDWVMPDENSVKKLQG--ESLHEQWDKLPSKHFKIKRIKEWVNDLQHCSPLEESDETSVSNDQVKRDP-KVLNG 349 (662)
Q Consensus 273 ~l~~L~~~~L~ls~N~I~~L~~--~s~l~~L~~L~l~~~si~~L~~~~~~L~~l~~L~~L~~l~ls~n~L~~~p-~~l~~ 349 (662)
.+..|.. |+++.|.+..++. +..+++|+.|++.+|.+..++. ..+..+..|.. +.++.+.+...+ ..+..
T Consensus 121 ~l~~L~~--L~L~~n~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~--~~~~~l~~L~~---L~L~~N~l~~~~~~~l~~ 193 (597)
T 3oja_B 121 NVPLLTV--LVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIED--DTFQATTSLQN---LQLSSNRLTHVDLSLIPS 193 (597)
T ss_dssp TCTTCCE--EECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCT--TTTTTCTTCCE---EECTTSCCSBCCGGGCTT
T ss_pred CCCCCCE--EEeeCCCCCCCCHHHhccCCCCCEEEeeCCcCCCCCh--hhhhcCCcCcE---EECcCCCCCCcChhhhhh
Confidence 3455555 7777787777776 5677778888888777776542 12333444443 344555554443 33677
Q ss_pred CCceeeCCccccchhhhHHHhhhccCCccEEEccCCCCCCCCCCCCCCCCCEEEccCCCCcccCCCcCCCCccEEEccCC
Q 035577 350 STAVKVDGKVTAGMEAVTKYISSLSASATTVQLSNHGLVVIPFLSAFVSLKVLNLSGNAIVRITAGALPRGLHILNLSKN 429 (662)
Q Consensus 350 L~~L~l~~~~~~~l~~l~~~l~~l~~sL~~L~Ls~N~L~~lp~l~~L~~L~~L~Ls~N~L~~l~~~~~~~~L~~L~Ls~N 429 (662)
|+.|++.++....+. .+..|+.|++++|.+..++. ...++|+.|+|++|.|+..+.....++|++|+|++|
T Consensus 194 L~~L~l~~n~l~~l~--------~~~~L~~L~ls~n~l~~~~~-~~~~~L~~L~L~~n~l~~~~~l~~l~~L~~L~Ls~N 264 (597)
T 3oja_B 194 LFHANVSYNLLSTLA--------IPIAVEELDASHNSINVVRG-PVNVELTILKLQHNNLTDTAWLLNYPGLVEVDLSYN 264 (597)
T ss_dssp CSEEECCSSCCSEEE--------CCTTCSEEECCSSCCCEEEC-SCCSCCCEEECCSSCCCCCGGGGGCTTCSEEECCSS
T ss_pred hhhhhcccCcccccc--------CCchhheeeccCCccccccc-ccCCCCCEEECCCCCCCCChhhccCCCCCEEECCCC
Confidence 777777776555442 23358899999999987775 224689999999999987643333389999999999
Q ss_pred CCCCC-c-CCCCCCCCCEEeCcCCCCccccccccCCCCCcEEEcCCCCCCCcc-cccCCCCCcEEECCCCccCccccchH
Q 035577 430 NISTI-E-GLRELTRLRVLDLSYNRILRIGHGLASCSSLKELYLAGNKISEVE-GLHRLLKLTVLDLRFNKISTAKCLGQ 506 (662)
Q Consensus 430 ~L~~l-p-~l~~L~~L~~LdLs~N~Ls~Lp~~l~~L~~L~~L~Ls~N~L~~l~-~l~~L~~L~~LdLs~N~Ls~l~~l~~ 506 (662)
.|+.+ | .|..+++|+.|+|++|.|+.+|..+..+++|+.|+|++|.|+.+| .+..+++|+.|+|++|.|+.++
T Consensus 265 ~l~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~l~~L~~L~L~~N~l~~~~---- 340 (597)
T 3oja_B 265 ELEKIMYHPFVKMQRLERLYISNNRLVALNLYGQPIPTLKVLDLSHNHLLHVERNQPQFDRLENLYLDHNSIVTLK---- 340 (597)
T ss_dssp CCCEEESGGGTTCSSCCEEECTTSCCCEEECSSSCCTTCCEEECCSSCCCCCGGGHHHHTTCSEEECCSSCCCCCC----
T ss_pred ccCCCCHHHhcCccCCCEEECCCCCCCCCCcccccCCCCcEEECCCCCCCccCcccccCCCCCEEECCCCCCCCcC----
Confidence 99986 3 689999999999999999999988888999999999999999986 6888999999999999999874
Q ss_pred hhhcCCCCcEEEccCCCCCCC
Q 035577 507 LAANYNSLQAISLEGNPAQKN 527 (662)
Q Consensus 507 ~l~~l~~L~~L~Ls~N~l~~~ 527 (662)
+..+++|+.|+|++|+|.|.
T Consensus 341 -~~~~~~L~~L~l~~N~~~~~ 360 (597)
T 3oja_B 341 -LSTHHTLKNLTLSHNDWDCN 360 (597)
T ss_dssp -CCTTCCCSEEECCSSCEEHH
T ss_pred -hhhcCCCCEEEeeCCCCCCh
Confidence 46789999999999999874
No 54
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=99.80 E-value=5.1e-19 Score=207.98 Aligned_cols=241 Identities=22% Similarity=0.228 Sum_probs=186.2
Q ss_pred CCCCceeecCCccCCC-cchhhhcCCCCCCCCcccCCCCCCCCccC-Cc---ccCCCCCceeeCCccccchhhhHHHhhh
Q 035577 298 HEQWDKLPSKHFKIKR-IKEWVNDLQHCSPLEESDETSVSNDQVKR-DP---KVLNGSTAVKVDGKVTAGMEAVTKYISS 372 (662)
Q Consensus 298 l~~L~~L~l~~~si~~-L~~~~~~L~~l~~L~~L~~l~ls~n~L~~-~p---~~l~~L~~L~l~~~~~~~l~~l~~~l~~ 372 (662)
+.+|+.|++.+|.+.. ++.+ +..+..|+. ++++.+.+.. .| ..+.+|+.|++.++...+ .++..+..
T Consensus 393 ~~~L~~L~L~~n~l~~~~p~~---l~~l~~L~~---L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~--~~p~~~~~ 464 (768)
T 3rgz_A 393 KNTLQELYLQNNGFTGKIPPT---LSNCSELVS---LHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEG--EIPQELMY 464 (768)
T ss_dssp TCCCCEEECCSSEEEEECCGG---GGGCTTCCE---EECCSSEEESCCCGGGGGCTTCCEEECCSSCCCS--CCCGGGGG
T ss_pred cCCccEEECCCCccccccCHH---HhcCCCCCE---EECcCCcccCcccHHHhcCCCCCEEECCCCcccC--cCCHHHcC
Confidence 5667788887777763 4443 333444444 4445555542 22 336788888888865542 23344555
Q ss_pred ccCCccEEEccCCCCC-CCCC-CCCCCCCCEEEccCCCCcccCCCcCC--CCccEEEccCCCCCC-Cc-CCCCCCCCCEE
Q 035577 373 LSASATTVQLSNHGLV-VIPF-LSAFVSLKVLNLSGNAIVRITAGALP--RGLHILNLSKNNIST-IE-GLRELTRLRVL 446 (662)
Q Consensus 373 l~~sL~~L~Ls~N~L~-~lp~-l~~L~~L~~L~Ls~N~L~~l~~~~~~--~~L~~L~Ls~N~L~~-lp-~l~~L~~L~~L 446 (662)
++. |+.|+|++|.++ .+|. +..+++|++|+|++|.++...+..+. ++|++|+|++|++++ +| .+..+++|++|
T Consensus 465 l~~-L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L 543 (768)
T 3rgz_A 465 VKT-LETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWL 543 (768)
T ss_dssp CTT-CCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEEECCGGGGGCTTCCEE
T ss_pred CCC-ceEEEecCCcccCcCCHHHhcCCCCCEEEccCCccCCcCChHHhcCCCCCEEECCCCcccCcCCHHHcCCCCCCEE
Confidence 554 999999999998 5665 89999999999999999855444443 799999999999984 55 68999999999
Q ss_pred eCcCCCCc-ccccc------------------------------------------------------------------
Q 035577 447 DLSYNRIL-RIGHG------------------------------------------------------------------ 459 (662)
Q Consensus 447 dLs~N~Ls-~Lp~~------------------------------------------------------------------ 459 (662)
+|++|.++ .+|..
T Consensus 544 ~Ls~N~l~g~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~g~ 623 (768)
T 3rgz_A 544 DLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGH 623 (768)
T ss_dssp ECCSSEEESBCCGGGGTTTTCBCCSTTCSCEEEEEECCSCCTTCCSSEEEEECTTCCGGGGGGGGGTCCSCTTSCEEEEE
T ss_pred ECCCCccCCcCChHHhcccchhhhhccccccccccccccccccccccccccccccccchhhhccccccccccccceeccc
Confidence 99999887 55543
Q ss_pred ----ccCCCCCcEEEcCCCCCCCc-c-cccCCCCCcEEECCCCccCccccchHhhhcCCCCcEEEccCCCCCCCCChHHH
Q 035577 460 ----LASCSSLKELYLAGNKISEV-E-GLHRLLKLTVLDLRFNKISTAKCLGQLAANYNSLQAISLEGNPAQKNVGDEQL 533 (662)
Q Consensus 460 ----l~~L~~L~~L~Ls~N~L~~l-~-~l~~L~~L~~LdLs~N~Ls~l~~l~~~l~~l~~L~~L~Ls~N~l~~~~~~~~l 533 (662)
+..+++|+.|+|++|++++. | .++.++.|+.|+|++|.|++. +|..++.+++|+.|+|++|.++|.+|.
T Consensus 624 ~~~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~--ip~~l~~L~~L~~LdLs~N~l~g~ip~--- 698 (768)
T 3rgz_A 624 TSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGS--IPDEVGDLRGLNILDLSSNKLDGRIPQ--- 698 (768)
T ss_dssp CCCSCSSSBCCCEEECCSSCCBSCCCGGGGGCTTCCEEECCSSCCCSC--CCGGGGGCTTCCEEECCSSCCEECCCG---
T ss_pred CchhhhccccccEEECcCCcccccCCHHHhccccCCEEeCcCCccCCC--CChHHhCCCCCCEEECCCCcccCcCCh---
Confidence 33457899999999999965 4 799999999999999999976 388889999999999999999998885
Q ss_pred HHHHHhhCccCceeecCCCCCC
Q 035577 534 KKNLQSLLPHLVYFNWQPMKAS 555 (662)
Q Consensus 534 ~~~l~~~l~~L~~Ld~~~~~~~ 555 (662)
....++.|++||++.+.+.
T Consensus 699 ---~l~~l~~L~~L~ls~N~l~ 717 (768)
T 3rgz_A 699 ---AMSALTMLTEIDLSNNNLS 717 (768)
T ss_dssp ---GGGGCCCCSEEECCSSEEE
T ss_pred ---HHhCCCCCCEEECcCCccc
Confidence 3567899999999999764
No 55
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.79 E-value=7e-20 Score=192.57 Aligned_cols=194 Identities=21% Similarity=0.235 Sum_probs=141.6
Q ss_pred CCCCCceeeCCccccchhhhHHHhhhccCCccEEEccCCCCC-CCCC-CCCCCCCCEEEccCCCCc-ccCCCcCC--CCc
Q 035577 347 LNGSTAVKVDGKVTAGMEAVTKYISSLSASATTVQLSNHGLV-VIPF-LSAFVSLKVLNLSGNAIV-RITAGALP--RGL 421 (662)
Q Consensus 347 l~~L~~L~l~~~~~~~l~~l~~~l~~l~~sL~~L~Ls~N~L~-~lp~-l~~L~~L~~L~Ls~N~L~-~l~~~~~~--~~L 421 (662)
+.+|+.|++.++.+.+ .++..+..++. |++|+|++|.|+ .+|. +..+++|++|+|++|.|+ .++..... +.|
T Consensus 100 l~~L~~L~Ls~n~l~~--~~p~~~~~l~~-L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L 176 (313)
T 1ogq_A 100 LTQLHYLYITHTNVSG--AIPDFLSQIKT-LVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLF 176 (313)
T ss_dssp CTTCSEEEEEEECCEE--ECCGGGGGCTT-CCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTC
T ss_pred CCCCCEEECcCCeeCC--cCCHHHhCCCC-CCEEeCCCCccCCcCChHHhcCCCCCeEECcCCcccCcCCHHHhhhhhcC
Confidence 4556666666543321 12233444554 888888888888 5665 888888999999988887 44433222 388
Q ss_pred cEEEccCCCCCC-Cc-CCCCCCCCCEEeCcCCCCc-cccccccCCCCCcEEEcCCCCCCCc-ccccCCCCCcEEECCCCc
Q 035577 422 HILNLSKNNIST-IE-GLRELTRLRVLDLSYNRIL-RIGHGLASCSSLKELYLAGNKISEV-EGLHRLLKLTVLDLRFNK 497 (662)
Q Consensus 422 ~~L~Ls~N~L~~-lp-~l~~L~~L~~LdLs~N~Ls-~Lp~~l~~L~~L~~L~Ls~N~L~~l-~~l~~L~~L~~LdLs~N~ 497 (662)
++|+|++|.++. +| .+..+. |++|+|++|.++ .+|..|..+++|+.|+|++|.++.. +.+..+++|+.|+|++|.
T Consensus 177 ~~L~L~~N~l~~~~~~~~~~l~-L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~l~~L~~L~Ls~N~ 255 (313)
T 1ogq_A 177 TSMTISRNRLTGKIPPTFANLN-LAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGKVGLSKNLNGLDLRNNR 255 (313)
T ss_dssp CEEECCSSEEEEECCGGGGGCC-CSEEECCSSEEEECCGGGCCTTSCCSEEECCSSEECCBGGGCCCCTTCCEEECCSSC
T ss_pred cEEECcCCeeeccCChHHhCCc-ccEEECcCCcccCcCCHHHhcCCCCCEEECCCCceeeecCcccccCCCCEEECcCCc
Confidence 889999888873 44 566666 889999998888 4455688888899999999888865 567778889999999988
Q ss_pred cCccccchHhhhcCCCCcEEEccCCCCCCCCChHHHHHHHHhhCccCceeecCCCC
Q 035577 498 ISTAKCLGQLAANYNSLQAISLEGNPAQKNVGDEQLKKNLQSLLPHLVYFNWQPMK 553 (662)
Q Consensus 498 Ls~l~~l~~~l~~l~~L~~L~Ls~N~l~~~~~~~~l~~~l~~~l~~L~~Ld~~~~~ 553 (662)
|++. ++..+..+++|+.|+|++|++++.+|.. ..+++|+.+++..+.
T Consensus 256 l~~~--~p~~l~~l~~L~~L~Ls~N~l~~~ip~~-------~~l~~L~~l~l~~N~ 302 (313)
T 1ogq_A 256 IYGT--LPQGLTQLKFLHSLNVSFNNLCGEIPQG-------GNLQRFDVSAYANNK 302 (313)
T ss_dssp CEEC--CCGGGGGCTTCCEEECCSSEEEEECCCS-------TTGGGSCGGGTCSSS
T ss_pred ccCc--CChHHhcCcCCCEEECcCCcccccCCCC-------ccccccChHHhcCCC
Confidence 8854 3667788888999999999888777652 456778877777665
No 56
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.79 E-value=5.9e-20 Score=193.18 Aligned_cols=186 Identities=20% Similarity=0.205 Sum_probs=147.6
Q ss_pred CCCCCceeeCCccccchhhhHHHhhhccCCccEEEccCCCCCCCCCCCCCCCCCEEEccCCCCcccCCCcCC--CCccEE
Q 035577 347 LNGSTAVKVDGKVTAGMEAVTKYISSLSASATTVQLSNHGLVVIPFLSAFVSLKVLNLSGNAIVRITAGALP--RGLHIL 424 (662)
Q Consensus 347 l~~L~~L~l~~~~~~~l~~l~~~l~~l~~sL~~L~Ls~N~L~~lp~l~~L~~L~~L~Ls~N~L~~l~~~~~~--~~L~~L 424 (662)
+.+|+.|+++++.+..+... ..|+.|++++|.|+.++. ..+++|++|+|++|.|+.+++..+. ++|++|
T Consensus 79 l~~L~~L~Ls~n~l~~l~~~--------~~L~~L~l~~n~l~~~~~-~~~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L 149 (317)
T 3o53_A 79 LSTLRTLDLNNNYVQELLVG--------PSIETLHAANNNISRVSC-SRGQGKKNIYLANNKITMLRDLDEGCRSRVQYL 149 (317)
T ss_dssp CTTCCEEECCSSEEEEEEEC--------TTCCEEECCSSCCSEEEE-CCCSSCEEEECCSSCCCSGGGBCTGGGSSEEEE
T ss_pred cCCCCEEECcCCccccccCC--------CCcCEEECCCCccCCcCc-cccCCCCEEECCCCCCCCccchhhhccCCCCEE
Confidence 45667777776654443321 348999999999997764 3478899999999999988776664 899999
Q ss_pred EccCCCCCCCc--CC-CCCCCCCEEeCcCCCCccccccccCCCCCcEEEcCCCCCCCcc-cccCCCCCcEEECCCCccCc
Q 035577 425 NLSKNNISTIE--GL-RELTRLRVLDLSYNRILRIGHGLASCSSLKELYLAGNKISEVE-GLHRLLKLTVLDLRFNKIST 500 (662)
Q Consensus 425 ~Ls~N~L~~lp--~l-~~L~~L~~LdLs~N~Ls~Lp~~l~~L~~L~~L~Ls~N~L~~l~-~l~~L~~L~~LdLs~N~Ls~ 500 (662)
+|++|.|+.++ .+ ..+++|++|+|++|.|+.++. ...+++|++|+|++|.|+.++ .+..+++|+.|+|++|.|+.
T Consensus 150 ~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~-~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~L~~L~L~~N~l~~ 228 (317)
T 3o53_A 150 DLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDVKG-QVVFAKLKTLDLSSNKLAFMGPEFQSAAGVTWISLRNNKLVL 228 (317)
T ss_dssp ECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEEEC-CCCCTTCCEEECCSSCCCEECGGGGGGTTCSEEECTTSCCCE
T ss_pred ECCCCCCCcccHHHHhhccCcCCEEECCCCcCccccc-ccccccCCEEECCCCcCCcchhhhcccCcccEEECcCCcccc
Confidence 99999999864 34 478999999999999998864 446899999999999999884 68889999999999999997
Q ss_pred cccchHhhhcCCCCcEEEccCCCCCCCCChHHHHHHHHhhCccCceeecC
Q 035577 501 AKCLGQLAANYNSLQAISLEGNPAQKNVGDEQLKKNLQSLLPHLVYFNWQ 550 (662)
Q Consensus 501 l~~l~~~l~~l~~L~~L~Ls~N~l~~~~~~~~l~~~l~~~l~~L~~Ld~~ 550 (662)
+ +..+..+++|+.|+|++|++.|.+ .......++.|+.+++.
T Consensus 229 l---~~~~~~l~~L~~L~l~~N~~~~~~-----~~~~~~~~~~L~~l~l~ 270 (317)
T 3o53_A 229 I---EKALRFSQNLEHFDLRGNGFHCGT-----LRDFFSKNQRVQTVAKQ 270 (317)
T ss_dssp E---CTTCCCCTTCCEEECTTCCCBHHH-----HHHHHHTCHHHHHHHHH
T ss_pred h---hhHhhcCCCCCEEEccCCCccCcC-----HHHHHhccccceEEECC
Confidence 6 555788899999999999998532 22334567777777665
No 57
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.79 E-value=5.1e-20 Score=193.66 Aligned_cols=231 Identities=18% Similarity=0.198 Sum_probs=190.4
Q ss_pred ccCcccccccCCCCCccCCC--CCCCCCCceeecCCccCCCcchhhhcCCCCCCCCcccCCCCCCCCccCCcccCCCCCc
Q 035577 275 SALAKDWVMPDENSVKKLQG--ESLHEQWDKLPSKHFKIKRIKEWVNDLQHCSPLEESDETSVSNDQVKRDPKVLNGSTA 352 (662)
Q Consensus 275 ~~L~~~~L~ls~N~I~~L~~--~s~l~~L~~L~l~~~si~~L~~~~~~L~~l~~L~~L~~l~ls~n~L~~~p~~l~~L~~ 352 (662)
.++.. ++++.|.+..+.. +..+.+|+.|++.+|.+..+.. +..+..|+. ++++.+.+..++. ...|+.
T Consensus 34 ~~L~~--L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~----~~~l~~L~~---L~Ls~n~l~~l~~-~~~L~~ 103 (317)
T 3o53_A 34 WNVKE--LDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD----LESLSTLRT---LDLNNNYVQELLV-GPSIET 103 (317)
T ss_dssp GGCSE--EECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEEEE----ETTCTTCCE---EECCSSEEEEEEE-CTTCCE
T ss_pred CCCCE--EECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcchh----hhhcCCCCE---EECcCCccccccC-CCCcCE
Confidence 45565 8899999999874 7889999999999999877653 344444444 5566777766653 488999
Q ss_pred eeeCCccccchhhhHHHhhhccCCccEEEccCCCCCCCCC--CCCCCCCCEEEccCCCCcccCCCcCC---CCccEEEcc
Q 035577 353 VKVDGKVTAGMEAVTKYISSLSASATTVQLSNHGLVVIPF--LSAFVSLKVLNLSGNAIVRITAGALP---RGLHILNLS 427 (662)
Q Consensus 353 L~l~~~~~~~l~~l~~~l~~l~~sL~~L~Ls~N~L~~lp~--l~~L~~L~~L~Ls~N~L~~l~~~~~~---~~L~~L~Ls 427 (662)
|++.++....+.. ..+ ..|+.|+|++|.|+.++. +..+++|++|+|++|.|+.++...+. ++|++|+|+
T Consensus 104 L~l~~n~l~~~~~-----~~~-~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~ 177 (317)
T 3o53_A 104 LHAANNNISRVSC-----SRG-QGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQ 177 (317)
T ss_dssp EECCSSCCSEEEE-----CCC-SSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECT
T ss_pred EECCCCccCCcCc-----ccc-CCCCEEECCCCCCCCccchhhhccCCCCEEECCCCCCCcccHHHHhhccCcCCEEECC
Confidence 9999876655432 123 349999999999998864 88899999999999999988766553 799999999
Q ss_pred CCCCCCCcCCCCCCCCCEEeCcCCCCccccccccCCCCCcEEEcCCCCCCCcc-cccCCCCCcEEECCCCccCccccchH
Q 035577 428 KNNISTIEGLRELTRLRVLDLSYNRILRIGHGLASCSSLKELYLAGNKISEVE-GLHRLLKLTVLDLRFNKISTAKCLGQ 506 (662)
Q Consensus 428 ~N~L~~lp~l~~L~~L~~LdLs~N~Ls~Lp~~l~~L~~L~~L~Ls~N~L~~l~-~l~~L~~L~~LdLs~N~Ls~l~~l~~ 506 (662)
+|.|+.++....+++|++|+|++|.|+.+|..+..+++|+.|+|++|.|+.++ .+..+++|+.|+|++|.+... .++.
T Consensus 178 ~N~l~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~L~~L~L~~N~l~~l~~~~~~l~~L~~L~l~~N~~~~~-~~~~ 256 (317)
T 3o53_A 178 YNFIYDVKGQVVFAKLKTLDLSSNKLAFMGPEFQSAAGVTWISLRNNKLVLIEKALRFSQNLEHFDLRGNGFHCG-TLRD 256 (317)
T ss_dssp TSCCCEEECCCCCTTCCEEECCSSCCCEECGGGGGGTTCSEEECTTSCCCEECTTCCCCTTCCEEECTTCCCBHH-HHHH
T ss_pred CCcCcccccccccccCCEEECCCCcCCcchhhhcccCcccEEECcCCcccchhhHhhcCCCCCEEEccCCCccCc-CHHH
Confidence 99999998777899999999999999999988999999999999999999886 688899999999999999822 2477
Q ss_pred hhhcCCCCcEEEccCC
Q 035577 507 LAANYNSLQAISLEGN 522 (662)
Q Consensus 507 ~l~~l~~L~~L~Ls~N 522 (662)
.+..+++|+.|++.+|
T Consensus 257 ~~~~~~~L~~l~l~~~ 272 (317)
T 3o53_A 257 FFSKNQRVQTVAKQTV 272 (317)
T ss_dssp HHHTCHHHHHHHHHHH
T ss_pred HHhccccceEEECCCc
Confidence 8888899998888854
No 58
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.79 E-value=2.2e-18 Score=192.30 Aligned_cols=173 Identities=17% Similarity=0.206 Sum_probs=129.6
Q ss_pred CccEEEccCCCCC-CCCC-C-----CCCCCCCEEEccCCCCcccC---------------------------CCcCCCCc
Q 035577 376 SATTVQLSNHGLV-VIPF-L-----SAFVSLKVLNLSGNAIVRIT---------------------------AGALPRGL 421 (662)
Q Consensus 376 sL~~L~Ls~N~L~-~lp~-l-----~~L~~L~~L~Ls~N~L~~l~---------------------------~~~~~~~L 421 (662)
.|+.|++++|.++ .+|. + ..++.|+.|++++|.+ .+| .....++|
T Consensus 248 ~L~~L~l~~n~l~~~~p~~~~~~~~~~l~~L~~l~l~~n~~-~~p~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~l~~L 326 (520)
T 2z7x_B 248 TVWYFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVF-GFPQSYIYEIFSNMNIKNFTVSGTRMVHMLCPSKISPF 326 (520)
T ss_dssp SCSEEEEEEEEEESCCCCCCCCCCSCCCCEEEEEEEEECCC-CSCTHHHHHHHHTCCCSEEEEESSCCCCCCCCSSCCCC
T ss_pred cccEEEeecccccCccccchhhcccccCceeEeccccccce-ecchhhhhcccccCceeEEEcCCCccccccchhhCCcc
Confidence 5888888888887 6775 4 6666666665555555 333 11223689
Q ss_pred cEEEccCCCCCC-C-cCCCCCCCCCEEeCcCCCCccc---cccccCCCCCcEEEcCCCCCCC-cc--cccCCCCCcEEEC
Q 035577 422 HILNLSKNNIST-I-EGLRELTRLRVLDLSYNRILRI---GHGLASCSSLKELYLAGNKISE-VE--GLHRLLKLTVLDL 493 (662)
Q Consensus 422 ~~L~Ls~N~L~~-l-p~l~~L~~L~~LdLs~N~Ls~L---p~~l~~L~~L~~L~Ls~N~L~~-l~--~l~~L~~L~~LdL 493 (662)
++|+|++|+++. + ..+..+++|++|+|++|.|+.+ |..+..+++|++|+|++|.|++ ++ .+..+++|+.|+|
T Consensus 327 ~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~l~~L~~L~Ls~N~l~~~l~~~~~~~l~~L~~L~L 406 (520)
T 2z7x_B 327 LHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKSLLSLNM 406 (520)
T ss_dssp CEEECCSSCCCTTTTTTCCCCSSCCEEECCSSCCCBHHHHHHHHTTCTTCCEEECCSSCCBCCGGGCSCCCCTTCCEEEC
T ss_pred cEEEeECCccChhhhhhhccCCCCCEEEccCCccCccccchHHHhhCCCCCEEECCCCcCCcccccchhccCccCCEEEC
Confidence 999999999987 3 3788999999999999999854 4568899999999999999988 65 4778889999999
Q ss_pred CCCccCccccchHhhhcCCCCcEEEccCCCCCCCCChHHHHHHHHhhCccCceeecCCCCCCccccc
Q 035577 494 RFNKISTAKCLGQLAANYNSLQAISLEGNPAQKNVGDEQLKKNLQSLLPHLVYFNWQPMKASTLKDA 560 (662)
Q Consensus 494 s~N~Ls~l~~l~~~l~~l~~L~~L~Ls~N~l~~~~~~~~l~~~l~~~l~~L~~Ld~~~~~~~~l~~~ 560 (662)
++|.|++.. +..+. ++|+.|+|++|.+. .+|.. + ..+++|++|++..+.+..++..
T Consensus 407 s~N~l~~~~--~~~l~--~~L~~L~Ls~N~l~-~ip~~-----~-~~l~~L~~L~L~~N~l~~l~~~ 462 (520)
T 2z7x_B 407 SSNILTDTI--FRCLP--PRIKVLDLHSNKIK-SIPKQ-----V-VKLEALQELNVASNQLKSVPDG 462 (520)
T ss_dssp CSSCCCGGG--GGSCC--TTCCEEECCSSCCC-CCCGG-----G-GGCTTCCEEECCSSCCCCCCTT
T ss_pred cCCCCCcch--hhhhc--ccCCEEECCCCccc-ccchh-----h-hcCCCCCEEECCCCcCCccCHH
Confidence 999987542 32221 68999999999888 34432 2 3688899999998888877654
No 59
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.79 E-value=6.4e-19 Score=197.65 Aligned_cols=200 Identities=22% Similarity=0.240 Sum_probs=147.6
Q ss_pred CCCCCCCccCCcc----cCCCCCceeeCCccccchh-hhHHHhhhccCCccEEEccCCCCCCCCC----CCCCCCCCEEE
Q 035577 333 TSVSNDQVKRDPK----VLNGSTAVKVDGKVTAGME-AVTKYISSLSASATTVQLSNHGLVVIPF----LSAFVSLKVLN 403 (662)
Q Consensus 333 l~ls~n~L~~~p~----~l~~L~~L~l~~~~~~~l~-~l~~~l~~l~~sL~~L~Ls~N~L~~lp~----l~~L~~L~~L~ 403 (662)
+.+..+.+..+|. .+.+|+.|++.++...+.. .....+..++. |+.|+|++|.|+.++. +..+++|++|+
T Consensus 315 L~l~~n~l~~ip~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~l~~-L~~L~Ls~N~l~~~~~~~~~~~~l~~L~~L~ 393 (549)
T 2z81_A 315 ITVENSKVFLVPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPS-LQTLVLSQNHLRSMQKTGEILLTLKNLTSLD 393 (549)
T ss_dssp EEEESSCCCCCCHHHHHHCTTCCEEECCSSCCCHHHHHHHTCTTSSTT-CCEEECTTSCCCCHHHHHHHGGGCTTCCEEE
T ss_pred EEeccCccccCCHHHHhcCccccEEEccCCccccccccchhhhhcccc-CcEEEccCCcccccccchhhhhcCCCCCEEE
Confidence 3444555655553 3677888888876654321 11122334443 8888888888887752 77888888888
Q ss_pred ccCCCCcccCCCcCC-CCccEEEccCCCCCCCcCCCCCCCCCEEeCcCCCCccccccccCCCCCcEEEcCCCCCCCcccc
Q 035577 404 LSGNAIVRITAGALP-RGLHILNLSKNNISTIEGLRELTRLRVLDLSYNRILRIGHGLASCSSLKELYLAGNKISEVEGL 482 (662)
Q Consensus 404 Ls~N~L~~l~~~~~~-~~L~~L~Ls~N~L~~lp~l~~L~~L~~LdLs~N~Ls~Lp~~l~~L~~L~~L~Ls~N~L~~l~~l 482 (662)
|++|.|+.+|..... ++|++|+|++|.|+.++... .++|++|+|++|.|+.++ ..+++|++|+|++|+|+.+|..
T Consensus 394 Ls~N~l~~lp~~~~~~~~L~~L~Ls~N~l~~l~~~~-~~~L~~L~Ls~N~l~~~~---~~l~~L~~L~Ls~N~l~~ip~~ 469 (549)
T 2z81_A 394 ISRNTFHPMPDSCQWPEKMRFLNLSSTGIRVVKTCI-PQTLEVLDVSNNNLDSFS---LFLPRLQELYISRNKLKTLPDA 469 (549)
T ss_dssp CTTCCCCCCCSCCCCCTTCCEEECTTSCCSCCCTTS-CTTCSEEECCSSCCSCCC---CCCTTCCEEECCSSCCSSCCCG
T ss_pred CCCCCCccCChhhcccccccEEECCCCCcccccchh-cCCceEEECCCCChhhhc---ccCChhcEEECCCCccCcCCCc
Confidence 888888877754332 78888888888888776321 267888888888888765 4788999999999999988877
Q ss_pred cCCCCCcEEECCCCccCccccchHhhhcCCCCcEEEccCCCCCCCCCh-HHHHHHHHh
Q 035577 483 HRLLKLTVLDLRFNKISTAKCLGQLAANYNSLQAISLEGNPAQKNVGD-EQLKKNLQS 539 (662)
Q Consensus 483 ~~L~~L~~LdLs~N~Ls~l~~l~~~l~~l~~L~~L~Ls~N~l~~~~~~-~~l~~~l~~ 539 (662)
..+++|+.|+|++|+|++++ +..+..+++|+.|+|++|++.|.|+. ..+..|+..
T Consensus 470 ~~l~~L~~L~Ls~N~l~~~~--~~~~~~l~~L~~L~l~~N~~~~~~~~~~~l~~~l~~ 525 (549)
T 2z81_A 470 SLFPVLLVMKISRNQLKSVP--DGIFDRLTSLQKIWLHTNPWDCSCPRIDYLSRWLNK 525 (549)
T ss_dssp GGCTTCCEEECCSSCCCCCC--TTGGGGCTTCCEEECCSSCBCCCHHHHHHHHHHHHH
T ss_pred ccCccCCEEecCCCccCCcC--HHHHhcCcccCEEEecCCCccCCCccHHHHHHHHHh
Confidence 78899999999999999875 56678899999999999999998884 334456543
No 60
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.79 E-value=1.5e-19 Score=202.03 Aligned_cols=205 Identities=19% Similarity=0.202 Sum_probs=142.7
Q ss_pred cccCCCCCccCCC--CCCCCCCceeecCCccCCCcchhhhcCCCCCCCCcccCCCCCCCCccCCcccCCCCCceeeCCcc
Q 035577 282 VMPDENSVKKLQG--ESLHEQWDKLPSKHFKIKRIKEWVNDLQHCSPLEESDETSVSNDQVKRDPKVLNGSTAVKVDGKV 359 (662)
Q Consensus 282 L~ls~N~I~~L~~--~s~l~~L~~L~l~~~si~~L~~~~~~L~~l~~L~~L~~l~ls~n~L~~~p~~l~~L~~L~l~~~~ 359 (662)
|+++.|.+..++. +..+++|+.|++.+|.+..+.. +.. +.+|+.|+++++.
T Consensus 39 L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~----l~~-----------------------l~~L~~L~Ls~N~ 91 (487)
T 3oja_A 39 LDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD----LES-----------------------LSTLRTLDLNNNY 91 (487)
T ss_dssp EECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEE----CTT-----------------------CTTCCEEECCSSE
T ss_pred EEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc----ccc-----------------------CCCCCEEEecCCc
Confidence 5666666666543 5556666666666665554332 122 3455555555544
Q ss_pred ccchhhhHHHhhhccCCccEEEccCCCCCCCCCCCCCCCCCEEEccCCCCcccCCCcCC--CCccEEEccCCCCCCCc--
Q 035577 360 TAGMEAVTKYISSLSASATTVQLSNHGLVVIPFLSAFVSLKVLNLSGNAIVRITAGALP--RGLHILNLSKNNISTIE-- 435 (662)
Q Consensus 360 ~~~l~~l~~~l~~l~~sL~~L~Ls~N~L~~lp~l~~L~~L~~L~Ls~N~L~~l~~~~~~--~~L~~L~Ls~N~L~~lp-- 435 (662)
+..+... ..|+.|+|++|.|+.++. ..+++|++|+|++|.|+.+++..+. ++|++|+|++|.|+.++
T Consensus 92 l~~l~~~--------~~L~~L~L~~N~l~~~~~-~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~ 162 (487)
T 3oja_A 92 VQELLVG--------PSIETLHAANNNISRVSC-SRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFA 162 (487)
T ss_dssp EEEEEEC--------TTCCEEECCSSCCCCEEE-CCCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGG
T ss_pred CCCCCCC--------CCcCEEECcCCcCCCCCc-cccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChH
Confidence 4333211 347888888888887664 3467888888888888877665554 78888888888888642
Q ss_pred CCC-CCCCCCEEeCcCCCCccccccccCCCCCcEEEcCCCCCCCc-ccccCCCCCcEEECCCCccCccccchHhhhcCCC
Q 035577 436 GLR-ELTRLRVLDLSYNRILRIGHGLASCSSLKELYLAGNKISEV-EGLHRLLKLTVLDLRFNKISTAKCLGQLAANYNS 513 (662)
Q Consensus 436 ~l~-~L~~L~~LdLs~N~Ls~Lp~~l~~L~~L~~L~Ls~N~L~~l-~~l~~L~~L~~LdLs~N~Ls~l~~l~~~l~~l~~ 513 (662)
.+. .+++|++|+|++|.|+.+|. +..+++|+.|+|++|.|+++ +.+..+++|+.|+|++|.|+++ |..+..+++
T Consensus 163 ~l~~~l~~L~~L~Ls~N~l~~~~~-~~~l~~L~~L~Ls~N~l~~~~~~~~~l~~L~~L~Ls~N~l~~l---p~~l~~l~~ 238 (487)
T 3oja_A 163 ELAASSDTLEHLNLQYNFIYDVKG-QVVFAKLKTLDLSSNKLAFMGPEFQSAAGVTWISLRNNKLVLI---EKALRFSQN 238 (487)
T ss_dssp GGGGGTTTCCEEECTTSCCCEEEC-CCCCTTCCEEECCSSCCCEECGGGGGGTTCSEEECTTSCCCEE---CTTCCCCTT
T ss_pred HHhhhCCcccEEecCCCccccccc-cccCCCCCEEECCCCCCCCCCHhHcCCCCccEEEecCCcCccc---chhhccCCC
Confidence 444 67888888888888887764 44688888888888888877 4677888888888888888876 445677788
Q ss_pred CcEEEccCCCCCC
Q 035577 514 LQAISLEGNPAQK 526 (662)
Q Consensus 514 L~~L~Ls~N~l~~ 526 (662)
|+.|+|++|++.|
T Consensus 239 L~~L~l~~N~l~c 251 (487)
T 3oja_A 239 LEHFDLRGNGFHC 251 (487)
T ss_dssp CCEEECTTCCBCH
T ss_pred CCEEEcCCCCCcC
Confidence 8888888888875
No 61
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.78 E-value=7.8e-18 Score=190.39 Aligned_cols=129 Identities=19% Similarity=0.186 Sum_probs=78.6
Q ss_pred CCccEEEccCCCCCCC-c-CCCCCCCCCEEeCcCCCCcccc---ccccCCCCCcEEEcCCCCCCC-cc--cccCCCCCcE
Q 035577 419 RGLHILNLSKNNISTI-E-GLRELTRLRVLDLSYNRILRIG---HGLASCSSLKELYLAGNKISE-VE--GLHRLLKLTV 490 (662)
Q Consensus 419 ~~L~~L~Ls~N~L~~l-p-~l~~L~~L~~LdLs~N~Ls~Lp---~~l~~L~~L~~L~Ls~N~L~~-l~--~l~~L~~L~~ 490 (662)
++|++|+|++|.++.. + .+..+++|++|+|++|.|+.++ ..+..+++|++|+|++|.|++ ++ .+..+++|+.
T Consensus 353 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~l~~L~~ 432 (562)
T 3a79_B 353 SSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAESILV 432 (562)
T ss_dssp CCCCEEECCSSCCCTTTTTTCCSCSSCCEEECCSSCCCBTTHHHHTTTTCTTCCEEECTTSCCBSCCSSCCCCCCTTCCE
T ss_pred CCceEEECCCCccccchhhhhcccCCCCEEECCCCCcCCcccchhhhcCCCCCCEEECCCCcCCCccChhhhcCcccCCE
Confidence 5677777777777652 2 5666777777777777776543 346667777777777777765 43 3556666777
Q ss_pred EECCCCccCccccchHhhhcC-CCCcEEEccCCCCCCCCChHHHHHHHHhhCccCceeecCCCCCCcccc
Q 035577 491 LDLRFNKISTAKCLGQLAANY-NSLQAISLEGNPAQKNVGDEQLKKNLQSLLPHLVYFNWQPMKASTLKD 559 (662)
Q Consensus 491 LdLs~N~Ls~l~~l~~~l~~l-~~L~~L~Ls~N~l~~~~~~~~l~~~l~~~l~~L~~Ld~~~~~~~~l~~ 559 (662)
|+|++|.|++.. + ..+ ++|+.|+|++|.++. +|. .+. .+++|++|++..+.+..++.
T Consensus 433 L~l~~n~l~~~~--~---~~l~~~L~~L~L~~N~l~~-ip~-----~~~-~l~~L~~L~L~~N~l~~l~~ 490 (562)
T 3a79_B 433 LNLSSNMLTGSV--F---RCLPPKVKVLDLHNNRIMS-IPK-----DVT-HLQALQELNVASNQLKSVPD 490 (562)
T ss_dssp EECCSSCCCGGG--G---SSCCTTCSEEECCSSCCCC-CCT-----TTT-SSCCCSEEECCSSCCCCCCT
T ss_pred EECCCCCCCcch--h---hhhcCcCCEEECCCCcCcc-cCh-----hhc-CCCCCCEEECCCCCCCCCCH
Confidence 777777665431 2 222 466666666666653 222 122 56666666666666665554
No 62
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.78 E-value=1.8e-18 Score=195.64 Aligned_cols=130 Identities=16% Similarity=0.220 Sum_probs=101.1
Q ss_pred ccEEEccCCCCCCCcCCCCCCCCCEEeCcCCCCcc-ccccccCCCCCcEEEcCCCCCCCcc----cccCCCCCcEEECCC
Q 035577 421 LHILNLSKNNISTIEGLRELTRLRVLDLSYNRILR-IGHGLASCSSLKELYLAGNKISEVE----GLHRLLKLTVLDLRF 495 (662)
Q Consensus 421 L~~L~Ls~N~L~~lp~l~~L~~L~~LdLs~N~Ls~-Lp~~l~~L~~L~~L~Ls~N~L~~l~----~l~~L~~L~~LdLs~ 495 (662)
|++|++++|.+..++....+++|++|++++|.++. +|..+..+++|++|+|++|+|+.++ .+..+++|+.|+|++
T Consensus 333 L~~L~l~~n~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~l~~ 412 (562)
T 3a79_B 333 IKMLSISDTPFIHMVCPPSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSL 412 (562)
T ss_dssp CSEEEEESSCCCCCCCCSSCCCCCEEECCSSCCCTTTTTTCCSCSSCCEEECCSSCCCBTTHHHHTTTTCTTCCEEECTT
T ss_pred ceEEEccCCCcccccCccCCCCceEEECCCCccccchhhhhcccCCCCEEECCCCCcCCcccchhhhcCCCCCCEEECCC
Confidence 66666666666554434778899999999999985 6777889999999999999998764 478889999999999
Q ss_pred CccCc-cccchHhhhcCCCCcEEEccCCCCCCCCChHHHHHHHHhhC-ccCceeecCCCCCCcccccc
Q 035577 496 NKIST-AKCLGQLAANYNSLQAISLEGNPAQKNVGDEQLKKNLQSLL-PHLVYFNWQPMKASTLKDAS 561 (662)
Q Consensus 496 N~Ls~-l~~l~~~l~~l~~L~~L~Ls~N~l~~~~~~~~l~~~l~~~l-~~L~~Ld~~~~~~~~l~~~~ 561 (662)
|.|+. ++ ...+..+++|+.|+|++|.+++.++ ..+ ++|++|++..+.+..++...
T Consensus 413 N~l~~~~~--~~~~~~l~~L~~L~l~~n~l~~~~~---------~~l~~~L~~L~L~~N~l~~ip~~~ 469 (562)
T 3a79_B 413 NSLNSHAY--DRTCAWAESILVLNLSSNMLTGSVF---------RCLPPKVKVLDLHNNRIMSIPKDV 469 (562)
T ss_dssp SCCBSCCS--SCCCCCCTTCCEEECCSSCCCGGGG---------SSCCTTCSEEECCSSCCCCCCTTT
T ss_pred CcCCCccC--hhhhcCcccCCEEECCCCCCCcchh---------hhhcCcCCEEECCCCcCcccChhh
Confidence 99987 54 3346778899999999999876332 223 68999999999888776543
No 63
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.78 E-value=3.6e-18 Score=177.94 Aligned_cols=194 Identities=23% Similarity=0.288 Sum_probs=158.9
Q ss_pred CCCCCceeeCCccccchhhhHHHhhhccCCccEEEccCCCCCCCCC--CCCCCCCCEEEccCCCCcccCCCcCCCCccEE
Q 035577 347 LNGSTAVKVDGKVTAGMEAVTKYISSLSASATTVQLSNHGLVVIPF--LSAFVSLKVLNLSGNAIVRITAGALPRGLHIL 424 (662)
Q Consensus 347 l~~L~~L~l~~~~~~~l~~l~~~l~~l~~sL~~L~Ls~N~L~~lp~--l~~L~~L~~L~Ls~N~L~~l~~~~~~~~L~~L 424 (662)
+.+++.+++.++....+. . .++..++.|+|++|.|+.++. |..+++|++|+|++|.|+.++.....++|++|
T Consensus 9 l~~l~~l~~~~~~l~~ip---~---~~~~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~l~~L~~L 82 (290)
T 1p9a_G 9 VASHLEVNCDKRNLTALP---P---DLPKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQVDGTLPVLGTL 82 (290)
T ss_dssp STTCCEEECTTSCCSSCC---S---CCCTTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEECCSCCTTCCEE
T ss_pred cCCccEEECCCCCCCcCC---C---CCCCCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCcccCCCCCCcCCEE
Confidence 345566666554433322 1 233468999999999998753 99999999999999999998876555899999
Q ss_pred EccCCCCCCCc-CCCCCCCCCEEeCcCCCCcccccc-ccCCCCCcEEEcCCCCCCCcc--cccCCCCCcEEECCCCccCc
Q 035577 425 NLSKNNISTIE-GLRELTRLRVLDLSYNRILRIGHG-LASCSSLKELYLAGNKISEVE--GLHRLLKLTVLDLRFNKIST 500 (662)
Q Consensus 425 ~Ls~N~L~~lp-~l~~L~~L~~LdLs~N~Ls~Lp~~-l~~L~~L~~L~Ls~N~L~~l~--~l~~L~~L~~LdLs~N~Ls~ 500 (662)
+|++|+|+.+| .+..+++|++|+|++|+|+.+|.. |..+++|++|+|++|+|+.++ .+..+++|+.|+|++|+|+.
T Consensus 83 ~Ls~N~l~~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~ 162 (290)
T 1p9a_G 83 DLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTE 162 (290)
T ss_dssp ECCSSCCSSCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCSC
T ss_pred ECCCCcCCcCchhhccCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCCCCccChhhcccccCCCEEECCCCcCCc
Confidence 99999999988 588999999999999999999754 999999999999999999985 47889999999999999998
Q ss_pred cccchHhhhcCCCCcEEEccCCCCCCCCChHHHHHHHHhhCccCceeecCCCCCC
Q 035577 501 AKCLGQLAANYNSLQAISLEGNPAQKNVGDEQLKKNLQSLLPHLVYFNWQPMKAS 555 (662)
Q Consensus 501 l~~l~~~l~~l~~L~~L~Ls~N~l~~~~~~~~l~~~l~~~l~~L~~Ld~~~~~~~ 555 (662)
++ +..+..+++|+.|+|++|.++. ++.. ....+.|+++++..+.+.
T Consensus 163 l~--~~~~~~l~~L~~L~L~~N~l~~-ip~~------~~~~~~L~~l~L~~Np~~ 208 (290)
T 1p9a_G 163 LP--AGLLNGLENLDTLLLQENSLYT-IPKG------FFGSHLLPFAFLHGNPWL 208 (290)
T ss_dssp CC--TTTTTTCTTCCEEECCSSCCCC-CCTT------TTTTCCCSEEECCSCCBC
T ss_pred cC--HHHhcCcCCCCEEECCCCcCCc-cChh------hcccccCCeEEeCCCCcc
Confidence 85 5567889999999999999985 3332 234568999999888753
No 64
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.78 E-value=2e-18 Score=172.49 Aligned_cols=159 Identities=28% Similarity=0.353 Sum_probs=143.2
Q ss_pred ccEEEccCCCCCCCCC-CCCCCCCCEEEccCCCCcccCCCcCC--CCccEEEccCCCCCCC-c-CCCCCCCCCEEeCcCC
Q 035577 377 ATTVQLSNHGLVVIPF-LSAFVSLKVLNLSGNAIVRITAGALP--RGLHILNLSKNNISTI-E-GLRELTRLRVLDLSYN 451 (662)
Q Consensus 377 L~~L~Ls~N~L~~lp~-l~~L~~L~~L~Ls~N~L~~l~~~~~~--~~L~~L~Ls~N~L~~l-p-~l~~L~~L~~LdLs~N 451 (662)
-+.+++++++++.+|. +. ++|+.|+|++|.|+.++...|. ++|++|+|++|.|+.+ + .|..+++|++|+|++|
T Consensus 13 ~~~v~c~~~~l~~iP~~l~--~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N 90 (220)
T 2v9t_B 13 NNIVDCRGKGLTEIPTNLP--ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGN 90 (220)
T ss_dssp TTEEECTTSCCSSCCSSCC--TTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSS
T ss_pred CCEEEcCCCCcCcCCCccC--cCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCC
Confidence 3589999999999996 43 7899999999999999987776 7999999999999987 3 7999999999999999
Q ss_pred CCcccccc-ccCCCCCcEEEcCCCCCCCcc--cccCCCCCcEEECCCCccCccccchHhhhcCCCCcEEEccCCCCCCCC
Q 035577 452 RILRIGHG-LASCSSLKELYLAGNKISEVE--GLHRLLKLTVLDLRFNKISTAKCLGQLAANYNSLQAISLEGNPAQKNV 528 (662)
Q Consensus 452 ~Ls~Lp~~-l~~L~~L~~L~Ls~N~L~~l~--~l~~L~~L~~LdLs~N~Ls~l~~l~~~l~~l~~L~~L~Ls~N~l~~~~ 528 (662)
.|+.+|.. |..+++|++|+|++|+|+.++ .|..+++|+.|+|++|.|+.++ +..+..+++|+.|+|++|+|.|.|
T Consensus 91 ~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~--~~~~~~l~~L~~L~L~~N~~~c~c 168 (220)
T 2v9t_B 91 KITELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIA--KGTFSPLRAIQTMHLAQNPFICDC 168 (220)
T ss_dssp CCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCC--TTTTTTCTTCCEEECCSSCEECSG
T ss_pred cCCccCHhHccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCCcCCEEC--HHHHhCCCCCCEEEeCCCCcCCCC
Confidence 99999877 788999999999999999983 6889999999999999999985 566788999999999999999999
Q ss_pred ChHHHHHHHHh
Q 035577 529 GDEQLKKNLQS 539 (662)
Q Consensus 529 ~~~~l~~~l~~ 539 (662)
...++..|+..
T Consensus 169 ~l~~l~~~l~~ 179 (220)
T 2v9t_B 169 HLKWLADYLHT 179 (220)
T ss_dssp GGHHHHHHHHH
T ss_pred ccHHHHHHHHh
Confidence 98888777654
No 65
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.78 E-value=2.6e-18 Score=194.54 Aligned_cols=115 Identities=23% Similarity=0.160 Sum_probs=75.9
Q ss_pred CCCCCCCCEEeCcCCCCccccc-cccCCCCCcEEEcCCCCCCC-c-c-cccCCCCCcEEECCCCccCccccchHhhhcCC
Q 035577 437 LRELTRLRVLDLSYNRILRIGH-GLASCSSLKELYLAGNKISE-V-E-GLHRLLKLTVLDLRFNKISTAKCLGQLAANYN 512 (662)
Q Consensus 437 l~~L~~L~~LdLs~N~Ls~Lp~-~l~~L~~L~~L~Ls~N~L~~-l-~-~l~~L~~L~~LdLs~N~Ls~l~~l~~~l~~l~ 512 (662)
+..+.+|+.+++++|.+..++. .+..++.|+.|+|++|.+.. + + .+..+++|+.|+|++|+|+++. +..|..++
T Consensus 441 ~~~l~~l~~l~ls~n~l~~~~~~~~~~~~~L~~L~Ls~N~~~~~~~~~~~~~l~~L~~L~Ls~N~L~~l~--~~~f~~l~ 518 (635)
T 4g8a_A 441 FLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLS--PTAFNSLS 518 (635)
T ss_dssp TTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEEC--TTTTTTCT
T ss_pred cccccccccccccccccccccccccccchhhhhhhhhhcccccccCchhhhhccccCEEECCCCccCCcC--hHHHcCCC
Confidence 3445566666777777764433 36667777777777776433 2 2 5667777777777777777764 56667777
Q ss_pred CCcEEEccCCCCCCCCChHHHHHHHHhhCccCceeecCCCCCCcccc
Q 035577 513 SLQAISLEGNPAQKNVGDEQLKKNLQSLLPHLVYFNWQPMKASTLKD 559 (662)
Q Consensus 513 ~L~~L~Ls~N~l~~~~~~~~l~~~l~~~l~~L~~Ld~~~~~~~~l~~ 559 (662)
+|++|+|++|.|++..+. ....+++|++|+++.+.+.....
T Consensus 519 ~L~~L~Ls~N~l~~l~~~------~~~~l~~L~~L~Ls~N~l~~~~~ 559 (635)
T 4g8a_A 519 SLQVLNMSHNNFFSLDTF------PYKCLNSLQVLDYSLNHIMTSKK 559 (635)
T ss_dssp TCCEEECTTSCCCBCCCG------GGTTCTTCCEEECTTSCCCBCCS
T ss_pred CCCEEECCCCcCCCCChh------HHhCCCCCCEEECCCCcCCCCCH
Confidence 777777777777764442 23456777777777777665543
No 66
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.78 E-value=9.6e-18 Score=185.89 Aligned_cols=248 Identities=18% Similarity=0.190 Sum_probs=193.7
Q ss_pred cCcccCcccccccCCCCCccCCCCCCCCCCceeecCCccCCCcchhhhcCCCCCCCCcccCCCCCCCCccCCc-ccCCCC
Q 035577 272 CNYSALAKDWVMPDENSVKKLQGESLHEQWDKLPSKHFKIKRIKEWVNDLQHCSPLEESDETSVSNDQVKRDP-KVLNGS 350 (662)
Q Consensus 272 ~~l~~L~~~~L~ls~N~I~~L~~~s~l~~L~~L~l~~~si~~L~~~~~~L~~l~~L~~L~~l~ls~n~L~~~p-~~l~~L 350 (662)
..+..+.. ++++.|.+..++.+..+++|+.|++.+|.++.++ +..+..|+.| +++.+.+...+ ..+.+|
T Consensus 39 ~~l~~L~~--L~Ls~n~l~~~~~l~~l~~L~~L~Ls~n~l~~~~-----~~~l~~L~~L---~Ls~N~l~~~~~~~l~~L 108 (457)
T 3bz5_A 39 EQLATLTS--LDCHNSSITDMTGIEKLTGLTKLICTSNNITTLD-----LSQNTNLTYL---ACDSNKLTNLDVTPLTKL 108 (457)
T ss_dssp HHHTTCCE--EECCSSCCCCCTTGGGCTTCSEEECCSSCCSCCC-----CTTCTTCSEE---ECCSSCCSCCCCTTCTTC
T ss_pred hHcCCCCE--EEccCCCcccChhhcccCCCCEEEccCCcCCeEc-----cccCCCCCEE---ECcCCCCceeecCCCCcC
Confidence 45677776 9999999999988888999999999999988874 4455555554 44555555443 346788
Q ss_pred CceeeCCccccchhhhHHHhhhccCCccEEEccCCCCCCCCCCCCCCCCCEEEccCC-CCcccCCCcCCCCccEEEccCC
Q 035577 351 TAVKVDGKVTAGMEAVTKYISSLSASATTVQLSNHGLVVIPFLSAFVSLKVLNLSGN-AIVRITAGALPRGLHILNLSKN 429 (662)
Q Consensus 351 ~~L~l~~~~~~~l~~l~~~l~~l~~sL~~L~Ls~N~L~~lp~l~~L~~L~~L~Ls~N-~L~~l~~~~~~~~L~~L~Ls~N 429 (662)
+.|++.++....+. +..++. |+.|++++|.|+.++ +..+++|++|++++| .+..++.. ..++|++|+|++|
T Consensus 109 ~~L~L~~N~l~~l~-----~~~l~~-L~~L~l~~N~l~~l~-l~~l~~L~~L~l~~n~~~~~~~~~-~l~~L~~L~ls~n 180 (457)
T 3bz5_A 109 TYLNCDTNKLTKLD-----VSQNPL-LTYLNCARNTLTEID-VSHNTQLTELDCHLNKKITKLDVT-PQTQLTTLDCSFN 180 (457)
T ss_dssp CEEECCSSCCSCCC-----CTTCTT-CCEEECTTSCCSCCC-CTTCTTCCEEECTTCSCCCCCCCT-TCTTCCEEECCSS
T ss_pred CEEECCCCcCCeec-----CCCCCc-CCEEECCCCccceec-cccCCcCCEEECCCCCcccccccc-cCCcCCEEECCCC
Confidence 89999887666552 445554 999999999999886 889999999999999 55555322 2279999999999
Q ss_pred CCCCCcCCCCCCCCCEEeCcCCCCccccccccCCCCCcEEEcCCCCCCCcccccCCCCCcEEECCCCccCccccchHhhh
Q 035577 430 NISTIEGLRELTRLRVLDLSYNRILRIGHGLASCSSLKELYLAGNKISEVEGLHRLLKLTVLDLRFNKISTAKCLGQLAA 509 (662)
Q Consensus 430 ~L~~lp~l~~L~~L~~LdLs~N~Ls~Lp~~l~~L~~L~~L~Ls~N~L~~l~~l~~L~~L~~LdLs~N~Ls~l~~l~~~l~ 509 (662)
+|+.++ +..+++|+.|++++|.|+.++ ++.+++|+.|+|++|+|+++| +..+++|+.|++++|+|++++ +.
T Consensus 181 ~l~~l~-l~~l~~L~~L~l~~N~l~~~~--l~~l~~L~~L~Ls~N~l~~ip-~~~l~~L~~L~l~~N~l~~~~-----~~ 251 (457)
T 3bz5_A 181 KITELD-VSQNKLLNRLNCDTNNITKLD--LNQNIQLTFLDCSSNKLTEID-VTPLTQLTYFDCSVNPLTELD-----VS 251 (457)
T ss_dssp CCCCCC-CTTCTTCCEEECCSSCCSCCC--CTTCTTCSEEECCSSCCSCCC-CTTCTTCSEEECCSSCCSCCC-----CT
T ss_pred ccceec-cccCCCCCEEECcCCcCCeec--cccCCCCCEEECcCCcccccC-ccccCCCCEEEeeCCcCCCcC-----HH
Confidence 999988 889999999999999999884 889999999999999999988 889999999999999999874 23
Q ss_pred cCCCCcE----------EEccCCCCCCCCChHHHHHHHHhhCccCceeecCCCCC
Q 035577 510 NYNSLQA----------ISLEGNPAQKNVGDEQLKKNLQSLLPHLVYFNWQPMKA 554 (662)
Q Consensus 510 ~l~~L~~----------L~Ls~N~l~~~~~~~~l~~~l~~~l~~L~~Ld~~~~~~ 554 (662)
.+++|+. |++++|++.+.++ ...+++|+.|++..+..
T Consensus 252 ~l~~L~~L~l~~n~L~~L~l~~n~~~~~~~--------~~~l~~L~~L~Ls~n~~ 298 (457)
T 3bz5_A 252 TLSKLTTLHCIQTDLLEIDLTHNTQLIYFQ--------AEGCRKIKELDVTHNTQ 298 (457)
T ss_dssp TCTTCCEEECTTCCCSCCCCTTCTTCCEEE--------CTTCTTCCCCCCTTCTT
T ss_pred HCCCCCEEeccCCCCCEEECCCCccCCccc--------ccccccCCEEECCCCcc
Confidence 4455554 4555555444333 24578999999998864
No 67
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.77 E-value=2.9e-18 Score=181.58 Aligned_cols=218 Identities=17% Similarity=0.185 Sum_probs=172.4
Q ss_pred ccCcccccccCCCCCccCCC-CCCCCCCceeecCCccCCCcchhhhcCCCCCCCCcccCCCCCCCCccCCcccCCCCCce
Q 035577 275 SALAKDWVMPDENSVKKLQG-ESLHEQWDKLPSKHFKIKRIKEWVNDLQHCSPLEESDETSVSNDQVKRDPKVLNGSTAV 353 (662)
Q Consensus 275 ~~L~~~~L~ls~N~I~~L~~-~s~l~~L~~L~l~~~si~~L~~~~~~L~~l~~L~~L~~l~ls~n~L~~~p~~l~~L~~L 353 (662)
..+.. ++++.|.+..++. +..+.+|+.|++.+|.+..++.. +.. +.+|+.|
T Consensus 81 ~~l~~--L~L~~n~l~~lp~~l~~l~~L~~L~L~~n~l~~lp~~---~~~-----------------------l~~L~~L 132 (328)
T 4fcg_A 81 PGRVA--LELRSVPLPQFPDQAFRLSHLQHMTIDAAGLMELPDT---MQQ-----------------------FAGLETL 132 (328)
T ss_dssp TTCCE--EEEESSCCSSCCSCGGGGTTCSEEEEESSCCCCCCSC---GGG-----------------------GTTCSEE
T ss_pred cceeE--EEccCCCchhcChhhhhCCCCCEEECCCCCccchhHH---Hhc-----------------------cCCCCEE
Confidence 45555 8899999999988 66789999999999988766642 111 3445555
Q ss_pred eeCCccccchhhhHHHhhhccCCccEEEccCCCC-CCCCC-CC---------CCCCCCEEEccCCCCcccCCCcCC-CCc
Q 035577 354 KVDGKVTAGMEAVTKYISSLSASATTVQLSNHGL-VVIPF-LS---------AFVSLKVLNLSGNAIVRITAGALP-RGL 421 (662)
Q Consensus 354 ~l~~~~~~~l~~l~~~l~~l~~sL~~L~Ls~N~L-~~lp~-l~---------~L~~L~~L~Ls~N~L~~l~~~~~~-~~L 421 (662)
++.++.+.. ++..+..++. |++|+|++|.+ ..+|. +. .+++|++|+|++|.|+.+|..... ++|
T Consensus 133 ~Ls~n~l~~---lp~~l~~l~~-L~~L~L~~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~lp~~l~~l~~L 208 (328)
T 4fcg_A 133 TLARNPLRA---LPASIASLNR-LRELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIRSLPASIANLQNL 208 (328)
T ss_dssp EEESCCCCC---CCGGGGGCTT-CCEEEEEEETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEECCCCCCGGGGGCTTC
T ss_pred ECCCCcccc---CcHHHhcCcC-CCEEECCCCCCccccChhHhhccchhhhccCCCCCEEECcCCCcCcchHhhcCCCCC
Confidence 555544332 2334555554 89999999654 56775 44 499999999999999988754322 799
Q ss_pred cEEEccCCCCCCCc-CCCCCCCCCEEeCcCCCCc-cccccccCCCCCcEEEcCCCCCCCc-c-cccCCCCCcEEECCCCc
Q 035577 422 HILNLSKNNISTIE-GLRELTRLRVLDLSYNRIL-RIGHGLASCSSLKELYLAGNKISEV-E-GLHRLLKLTVLDLRFNK 497 (662)
Q Consensus 422 ~~L~Ls~N~L~~lp-~l~~L~~L~~LdLs~N~Ls-~Lp~~l~~L~~L~~L~Ls~N~L~~l-~-~l~~L~~L~~LdLs~N~ 497 (662)
++|+|++|.|+.++ .+..+++|++|+|++|.+. .+|..++.+++|+.|+|++|.+.+. | .+..+++|+.|+|++|.
T Consensus 209 ~~L~L~~N~l~~l~~~l~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~ 288 (328)
T 4fcg_A 209 KSLKIRNSPLSALGPAIHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCV 288 (328)
T ss_dssp CEEEEESSCCCCCCGGGGGCTTCCEEECTTCTTCCBCCCCTTCCCCCCEEECTTCTTCCBCCTTGGGCTTCCEEECTTCT
T ss_pred CEEEccCCCCCcCchhhccCCCCCEEECcCCcchhhhHHHhcCCCCCCEEECCCCCchhhcchhhhcCCCCCEEeCCCCC
Confidence 99999999999986 6899999999999998876 7788899999999999999877654 5 78999999999999998
Q ss_pred cCccccchHhhhcCCCCcEEEccCCCCCC
Q 035577 498 ISTAKCLGQLAANYNSLQAISLEGNPAQK 526 (662)
Q Consensus 498 Ls~l~~l~~~l~~l~~L~~L~Ls~N~l~~ 526 (662)
+.+. +|..+..+++|+.+++..|.+..
T Consensus 289 ~~~~--iP~~l~~L~~L~~l~l~~~~~~~ 315 (328)
T 4fcg_A 289 NLSR--LPSLIAQLPANCIILVPPHLQAQ 315 (328)
T ss_dssp TCCC--CCGGGGGSCTTCEEECCGGGSCC
T ss_pred chhh--ccHHHhhccCceEEeCCHHHHHH
Confidence 8765 48888999999999999887754
No 68
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.77 E-value=6.8e-18 Score=200.40 Aligned_cols=265 Identities=19% Similarity=0.201 Sum_probs=162.8
Q ss_pred cCcccCcccccccCCC-CCccCCC--CCCCCCCceeecCCccCCCc-chhhhcCCCCCCCCcccCCCCCCCCccC-C---
Q 035577 272 CNYSALAKDWVMPDEN-SVKKLQG--ESLHEQWDKLPSKHFKIKRI-KEWVNDLQHCSPLEESDETSVSNDQVKR-D--- 343 (662)
Q Consensus 272 ~~l~~L~~~~L~ls~N-~I~~L~~--~s~l~~L~~L~l~~~si~~L-~~~~~~L~~l~~L~~L~~l~ls~n~L~~-~--- 343 (662)
..+..|.. |+++.| .+..++. +..+.+|+.|++.+|.+..+ +.+ +..+..|+.| +++.+.+.. .
T Consensus 45 ~~l~~L~~--LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l~~~~p~~---~~~l~~L~~L---~Ls~n~l~~~~~~~ 116 (844)
T 3j0a_A 45 PFLEQLQL--LELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLHPDA---FQGLFHLFEL---RLYFCGLSDAVLKD 116 (844)
T ss_dssp SSCCSCSE--EEECTTCCCCEECTTTTSSCTTCCEEECTTCCCCEECTTS---SCSCSSCCCE---ECTTCCCSSCCSTT
T ss_pred cccccCeE--EeCCCCCCccccCHHHhcCCCCCCEEECCCCcCcccCHhH---ccCCcccCEe---eCcCCCCCcccccC
Confidence 44556665 777777 5555533 67778888888888887765 332 3444444443 344444432 1
Q ss_pred --cccCCCCCceeeCCccccchhhhHHHhhhccCCccEEEccCCCCCCCCC--CCCC--CC-------------------
Q 035577 344 --PKVLNGSTAVKVDGKVTAGMEAVTKYISSLSASATTVQLSNHGLVVIPF--LSAF--VS------------------- 398 (662)
Q Consensus 344 --p~~l~~L~~L~l~~~~~~~l~~l~~~l~~l~~sL~~L~Ls~N~L~~lp~--l~~L--~~------------------- 398 (662)
...+.+|+.|+++++....+. ....+..++. |+.|+|++|.++.+.. +..+ ++
T Consensus 117 ~~~~~L~~L~~L~Ls~N~l~~~~-~~~~~~~L~~-L~~L~Ls~N~i~~~~~~~l~~l~~~~L~~L~L~~n~l~~~~~~~~ 194 (844)
T 3j0a_A 117 GYFRNLKALTRLDLSKNQIRSLY-LHPSFGKLNS-LKSIDFSSNQIFLVCEHELEPLQGKTLSFFSLAANSLYSRVSVDW 194 (844)
T ss_dssp CCCSSCSSCCEEEEESCCCCCCC-CCGGGGTCSS-CCEEEEESSCCCCCCSGGGHHHHHCSSCCCEECCSBSCCCCCCCC
T ss_pred ccccccCCCCEEECCCCcccccc-cchhHhhCCC-CCEEECCCCcCCeeCHHHcccccCCccceEECCCCccccccccch
Confidence 234677788888776554432 1123445554 8888888887754321 2211 22
Q ss_pred -----------CCEEEccCCCCcccCCC------------------------------------cC----CCCccEEEcc
Q 035577 399 -----------LKVLNLSGNAIVRITAG------------------------------------AL----PRGLHILNLS 427 (662)
Q Consensus 399 -----------L~~L~Ls~N~L~~l~~~------------------------------------~~----~~~L~~L~Ls 427 (662)
|++|+|++|.++..... .| ..+|+.|+|+
T Consensus 195 ~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L~l~~~~~~~~~~~~~l~~~~~~~f~~l~~~~L~~L~Ls 274 (844)
T 3j0a_A 195 GKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHNIKDPDQNTFAGLARSSVRHLDLS 274 (844)
T ss_dssp CSSSCTTTTCCBSEEBCSSCCSSTTTTSGGGGTSCSCCBSEEECCSSCCBCSSSCSSSTTGGGTTTTTTTTSCCCEEECT
T ss_pred hhcCCccccCceeEEecCCCcCchhHHHHHHhhcCcccccceecccccccccccccccCCCChhhhhccccCCccEEECC
Confidence 56666666544311100 00 1357777777
Q ss_pred CCCCCCCc--CCCCCCCCCEEeCcCCCCcccc-ccccCCCCCcEEEcCCCCCCCc--ccccCCCCCcEEECCCCccCccc
Q 035577 428 KNNISTIE--GLRELTRLRVLDLSYNRILRIG-HGLASCSSLKELYLAGNKISEV--EGLHRLLKLTVLDLRFNKISTAK 502 (662)
Q Consensus 428 ~N~L~~lp--~l~~L~~L~~LdLs~N~Ls~Lp-~~l~~L~~L~~L~Ls~N~L~~l--~~l~~L~~L~~LdLs~N~Ls~l~ 502 (662)
+|.+..++ .+..+++|+.|+|++|.|+.++ ..|..+++|++|+|++|.|+.+ ..+..+++|+.|+|++|.|+.++
T Consensus 275 ~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~ 354 (844)
T 3j0a_A 275 HGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLGELYSSNFYGLPKVAYIDLQKNHIAIIQ 354 (844)
T ss_dssp TCCCCEECSCCSSSCCCCCEEEEESCCCCEECTTTTTTCSSCCEEEEESCCCSCCCSCSCSSCTTCCEEECCSCCCCCCC
T ss_pred CCcccccChhhhhcCCCCCEEECCCCcCCCCChHHhcCCCCCCEEECCCCCCCccCHHHhcCCCCCCEEECCCCCCCccC
Confidence 77776653 4677778888888888877664 3477788888888888888776 26777788888888888887764
Q ss_pred cchHhhhcCCCCcEEEccCCCCCCCCChHHHHHHHHhhCccCceeecCCCCCCcccc
Q 035577 503 CLGQLAANYNSLQAISLEGNPAQKNVGDEQLKKNLQSLLPHLVYFNWQPMKASTLKD 559 (662)
Q Consensus 503 ~l~~~l~~l~~L~~L~Ls~N~l~~~~~~~~l~~~l~~~l~~L~~Ld~~~~~~~~l~~ 559 (662)
+..+..+++|+.|+|++|.+++.. .+++|+.|++..+.+..++.
T Consensus 355 --~~~~~~l~~L~~L~Ls~N~l~~i~-----------~~~~L~~L~l~~N~l~~l~~ 398 (844)
T 3j0a_A 355 --DQTFKFLEKLQTLDLRDNALTTIH-----------FIPSIPDIFLSGNKLVTLPK 398 (844)
T ss_dssp --SSCSCSCCCCCEEEEETCCSCCCS-----------SCCSCSEEEEESCCCCCCCC
T ss_pred --hhhhcCCCCCCEEECCCCCCCccc-----------CCCCcchhccCCCCcccccc
Confidence 445677788888888888776521 15566666666665554443
No 69
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.77 E-value=1.8e-19 Score=189.42 Aligned_cols=233 Identities=16% Similarity=0.162 Sum_probs=177.5
Q ss_pred cccCCCCCcc---CCC-CCCCCCCceeecCC-ccCCC-cchhhhcCCCCCCCCcccCCCCCCCCcc-CCc---ccCCCCC
Q 035577 282 VMPDENSVKK---LQG-ESLHEQWDKLPSKH-FKIKR-IKEWVNDLQHCSPLEESDETSVSNDQVK-RDP---KVLNGST 351 (662)
Q Consensus 282 L~ls~N~I~~---L~~-~s~l~~L~~L~l~~-~si~~-L~~~~~~L~~l~~L~~L~~l~ls~n~L~-~~p---~~l~~L~ 351 (662)
++++.|.+.. ++. +..+++|+.|++.+ +.+.. ++.. +..+..|+.| +++.+.+. ..| ..+.+|+
T Consensus 55 L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~l~~~~p~~---l~~l~~L~~L---~Ls~n~l~~~~p~~~~~l~~L~ 128 (313)
T 1ogq_A 55 LDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPA---IAKLTQLHYL---YITHTNVSGAIPDFLSQIKTLV 128 (313)
T ss_dssp EEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGG---GGGCTTCSEE---EEEEECCEEECCGGGGGCTTCC
T ss_pred EECCCCCccCCcccChhHhCCCCCCeeeCCCCCcccccCChh---HhcCCCCCEE---ECcCCeeCCcCCHHHhCCCCCC
Confidence 7777887774 444 67788899999983 66653 5543 3344444443 34444443 233 3467888
Q ss_pred ceeeCCccccchhhhHHHhhhccCCccEEEccCCCCC-CCCC-CCCCC-CCCEEEccCCCCcccCCCcCC-CCccEEEcc
Q 035577 352 AVKVDGKVTAGMEAVTKYISSLSASATTVQLSNHGLV-VIPF-LSAFV-SLKVLNLSGNAIVRITAGALP-RGLHILNLS 427 (662)
Q Consensus 352 ~L~l~~~~~~~l~~l~~~l~~l~~sL~~L~Ls~N~L~-~lp~-l~~L~-~L~~L~Ls~N~L~~l~~~~~~-~~L~~L~Ls 427 (662)
.|++.++.+.. .++..+..++. |++|+|++|.|+ .+|. +..++ .|++|+|++|.++...+..+. ..|++|+|+
T Consensus 129 ~L~Ls~N~l~~--~~p~~~~~l~~-L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l~L~~L~Ls 205 (313)
T 1ogq_A 129 TLDFSYNALSG--TLPPSISSLPN-LVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLNLAFVDLS 205 (313)
T ss_dssp EEECCSSEEES--CCCGGGGGCTT-CCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCCCSEEECC
T ss_pred EEeCCCCccCC--cCChHHhcCCC-CCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCeeeccCChHHhCCcccEEECc
Confidence 88888865442 23345556665 999999999998 7776 88888 999999999999855444444 459999999
Q ss_pred CCCCCCC-c-CCCCCCCCCEEeCcCCCCccccccccCCCCCcEEEcCCCCCCC-cc-cccCCCCCcEEECCCCccCcccc
Q 035577 428 KNNISTI-E-GLRELTRLRVLDLSYNRILRIGHGLASCSSLKELYLAGNKISE-VE-GLHRLLKLTVLDLRFNKISTAKC 503 (662)
Q Consensus 428 ~N~L~~l-p-~l~~L~~L~~LdLs~N~Ls~Lp~~l~~L~~L~~L~Ls~N~L~~-l~-~l~~L~~L~~LdLs~N~Ls~l~~ 503 (662)
+|.|+.. + .+..+++|++|+|++|.++..+..+..+++|++|+|++|.|++ +| .+..+++|+.|+|++|+|++.
T Consensus 206 ~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~-- 283 (313)
T 1ogq_A 206 RNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGE-- 283 (313)
T ss_dssp SSEEEECCGGGCCTTSCCSEEECCSSEECCBGGGCCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEE--
T ss_pred CCcccCcCCHHHhcCCCCCEEECCCCceeeecCcccccCCCCEEECcCCcccCcCChHHhcCcCCCEEECcCCccccc--
Confidence 9999864 3 6899999999999999999666668899999999999999984 44 689999999999999999964
Q ss_pred chHhhhcCCCCcEEEccCCCCCC
Q 035577 504 LGQLAANYNSLQAISLEGNPAQK 526 (662)
Q Consensus 504 l~~~l~~l~~L~~L~Ls~N~l~~ 526 (662)
+|.. ..+++|+.|++.+|+.-|
T Consensus 284 ip~~-~~l~~L~~l~l~~N~~lc 305 (313)
T 1ogq_A 284 IPQG-GNLQRFDVSAYANNKCLC 305 (313)
T ss_dssp CCCS-TTGGGSCGGGTCSSSEEE
T ss_pred CCCC-ccccccChHHhcCCCCcc
Confidence 2444 678999999999999544
No 70
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.77 E-value=7.5e-18 Score=173.24 Aligned_cols=171 Identities=21% Similarity=0.278 Sum_probs=151.0
Q ss_pred ccEEEccCCCCCCCCCCCCCCCCCEEEccCCCCcccCCCcCCCCccEEEccCCCCCCCcC--CCCCCCCCEEeCcCCCCc
Q 035577 377 ATTVQLSNHGLVVIPFLSAFVSLKVLNLSGNAIVRITAGALPRGLHILNLSKNNISTIEG--LRELTRLRVLDLSYNRIL 454 (662)
Q Consensus 377 L~~L~Ls~N~L~~lp~l~~L~~L~~L~Ls~N~L~~l~~~~~~~~L~~L~Ls~N~L~~lp~--l~~L~~L~~LdLs~N~Ls 454 (662)
++.|++++|.++.++.+..+++|++|+|++|.++.++...-.++|++|+|++|.|+.++. +..+++|++|+|++|.++
T Consensus 43 L~~L~l~~~~i~~~~~l~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~ 122 (272)
T 3rfs_A 43 IDQIIANNSDIKSVQGIQYLPNVRYLALGGNKLHDISALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQLQ 122 (272)
T ss_dssp CCEEECTTSCCCCCTTGGGCTTCCEEECTTSCCCCCGGGTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCC
T ss_pred eeeeeeCCCCcccccccccCCCCcEEECCCCCCCCchhhcCCCCCCEEECCCCccCccChhHhcCCcCCCEEECCCCcCC
Confidence 899999999999999999999999999999999887633333899999999999999863 899999999999999999
Q ss_pred ccccc-ccCCCCCcEEEcCCCCCCCcc--cccCCCCCcEEECCCCccCccccchHhhhcCCCCcEEEccCCCCCCCCChH
Q 035577 455 RIGHG-LASCSSLKELYLAGNKISEVE--GLHRLLKLTVLDLRFNKISTAKCLGQLAANYNSLQAISLEGNPAQKNVGDE 531 (662)
Q Consensus 455 ~Lp~~-l~~L~~L~~L~Ls~N~L~~l~--~l~~L~~L~~LdLs~N~Ls~l~~l~~~l~~l~~L~~L~Ls~N~l~~~~~~~ 531 (662)
.++.. |..+++|++|+|++|.|+.++ .+..+++|+.|+|++|.|++++ +..+..+++|+.|+|++|.+.+..+.
T Consensus 123 ~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~--~~~~~~l~~L~~L~L~~N~l~~~~~~- 199 (272)
T 3rfs_A 123 SLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLP--EGVFDKLTQLKDLRLYQNQLKSVPDG- 199 (272)
T ss_dssp CCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCC--TTTTTTCTTCCEEECCSSCCSCCCTT-
T ss_pred ccCHHHhccCCCCCEEECCCCccCccCHHHhccCccCCEEECCCCCcCccC--HHHhcCCccCCEEECCCCcCCccCHH-
Confidence 88766 789999999999999999985 3789999999999999999875 56678899999999999999985542
Q ss_pred HHHHHHHhhCccCceeecCCCCCC
Q 035577 532 QLKKNLQSLLPHLVYFNWQPMKAS 555 (662)
Q Consensus 532 ~l~~~l~~~l~~L~~Ld~~~~~~~ 555 (662)
....+++|++|++..+.+.
T Consensus 200 -----~~~~l~~L~~L~l~~N~~~ 218 (272)
T 3rfs_A 200 -----VFDRLTSLQYIWLHDNPWD 218 (272)
T ss_dssp -----TTTTCTTCCEEECCSSCBC
T ss_pred -----HHhCCcCCCEEEccCCCcc
Confidence 3467899999999988653
No 71
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.77 E-value=5.9e-18 Score=173.69 Aligned_cols=196 Identities=19% Similarity=0.232 Sum_probs=158.5
Q ss_pred CCCCceeeCCccccchhhhHHHhhhccCCccEEEccCCCCCCCCC--CCCCCCCCEEEccCCCCcccCCCcCC--CCccE
Q 035577 348 NGSTAVKVDGKVTAGMEAVTKYISSLSASATTVQLSNHGLVVIPF--LSAFVSLKVLNLSGNAIVRITAGALP--RGLHI 423 (662)
Q Consensus 348 ~~L~~L~l~~~~~~~l~~l~~~l~~l~~sL~~L~Ls~N~L~~lp~--l~~L~~L~~L~Ls~N~L~~l~~~~~~--~~L~~ 423 (662)
..|+.|++.++....+.. ..+..++. |++|+|++|.|+.++. |..+++|++|+|++|.|+.++...+. ++|++
T Consensus 28 ~~l~~L~ls~n~l~~~~~--~~~~~l~~-L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~ 104 (276)
T 2z62_A 28 FSTKNLDLSFNPLRHLGS--YSFFSFPE-LQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQK 104 (276)
T ss_dssp TTCCEEECTTCCCCEECT--TTTTTCTT-CSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCE
T ss_pred CCccEEECCCCcccccCH--hHhccccC-CcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCccChhhhcCCccccE
Confidence 468888888766554432 23444554 9999999999998874 89999999999999999998877666 79999
Q ss_pred EEccCCCCCCCc--CCCCCCCCCEEeCcCCCCcc--ccccccCCCCCcEEEcCCCCCCCcc--cccCCCCCc----EEEC
Q 035577 424 LNLSKNNISTIE--GLRELTRLRVLDLSYNRILR--IGHGLASCSSLKELYLAGNKISEVE--GLHRLLKLT----VLDL 493 (662)
Q Consensus 424 L~Ls~N~L~~lp--~l~~L~~L~~LdLs~N~Ls~--Lp~~l~~L~~L~~L~Ls~N~L~~l~--~l~~L~~L~----~LdL 493 (662)
|++++|.++.++ .+..+++|++|++++|.++. +|..+..+++|+.|+|++|+|+.++ .+..+.+|+ .|++
T Consensus 105 L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~l~l~L~l 184 (276)
T 2z62_A 105 LVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDL 184 (276)
T ss_dssp EECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTCTTCCEEEEC
T ss_pred EECCCCCccccCchhcccCCCCCEEECcCCccceecCchhhccCCCCCEEECCCCCCCcCCHHHhhhhhhccccceeeec
Confidence 999999999886 48899999999999999986 6788999999999999999999873 455555555 8999
Q ss_pred CCCccCccccchHhhhcCCCCcEEEccCCCCCCCCChHHHHHHHHhhCccCceeecCCCCCC
Q 035577 494 RFNKISTAKCLGQLAANYNSLQAISLEGNPAQKNVGDEQLKKNLQSLLPHLVYFNWQPMKAS 555 (662)
Q Consensus 494 s~N~Ls~l~~l~~~l~~l~~L~~L~Ls~N~l~~~~~~~~l~~~l~~~l~~L~~Ld~~~~~~~ 555 (662)
++|.|+.++ +..+ ...+|+.|+|++|.+++..+ .+...+++|+.|++..+.+.
T Consensus 185 s~n~l~~~~--~~~~-~~~~L~~L~L~~n~l~~~~~------~~~~~l~~L~~L~l~~N~~~ 237 (276)
T 2z62_A 185 SLNPMNFIQ--PGAF-KEIRLKELALDTNQLKSVPD------GIFDRLTSLQKIWLHTNPWD 237 (276)
T ss_dssp CSSCCCEEC--TTSS-CSCCEEEEECCSSCCSCCCT------TTTTTCCSCCEEECCSSCBC
T ss_pred CCCcccccC--cccc-CCCcccEEECCCCceeecCH------hHhcccccccEEEccCCccc
Confidence 999999874 3333 44589999999999986433 23467899999999988754
No 72
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.76 E-value=2.5e-18 Score=182.95 Aligned_cols=238 Identities=20% Similarity=0.216 Sum_probs=169.3
Q ss_pred cccCCCCCccCCCCCCCCCCceeecCCccCCCcchhhhcCCCCCCCCcccCCCCCCCCccCCcccCCCCCceeeCCcccc
Q 035577 282 VMPDENSVKKLQGESLHEQWDKLPSKHFKIKRIKEWVNDLQHCSPLEESDETSVSNDQVKRDPKVLNGSTAVKVDGKVTA 361 (662)
Q Consensus 282 L~ls~N~I~~L~~~s~l~~L~~L~l~~~si~~L~~~~~~L~~l~~L~~L~~l~ls~n~L~~~p~~l~~L~~L~l~~~~~~ 361 (662)
.+.+.+.++.++. ....+++.|++.+|.++.++.. .+..+ .+|+.|++.++...
T Consensus 36 c~~~~~~l~~iP~-~~~~~L~~L~l~~n~i~~~~~~--~~~~l-----------------------~~L~~L~L~~n~l~ 89 (353)
T 2z80_A 36 CKGSSGSLNSIPS-GLTEAVKSLDLSNNRITYISNS--DLQRC-----------------------VNLQALVLTSNGIN 89 (353)
T ss_dssp EECCSTTCSSCCT-TCCTTCCEEECTTSCCCEECTT--TTTTC-----------------------TTCCEEECTTSCCC
T ss_pred eeCCCCCcccccc-cccccCcEEECCCCcCcccCHH--HhccC-----------------------CCCCEEECCCCccC
Confidence 4567888888876 2335899999999988876631 12222 33344444433222
Q ss_pred chhhhHHHhhhccCCccEEEccCCCCCCCCC--CCCCCCCCEEEccCCCCcccCC-CcCC--CCccEEEccCC-CCCCCc
Q 035577 362 GMEAVTKYISSLSASATTVQLSNHGLVVIPF--LSAFVSLKVLNLSGNAIVRITA-GALP--RGLHILNLSKN-NISTIE 435 (662)
Q Consensus 362 ~l~~l~~~l~~l~~sL~~L~Ls~N~L~~lp~--l~~L~~L~~L~Ls~N~L~~l~~-~~~~--~~L~~L~Ls~N-~L~~lp 435 (662)
.+. +..+..++. |++|+|++|.|+.+|. |..+++|++|+|++|.|+.++. ..+. ++|++|++++| .++.++
T Consensus 90 ~~~--~~~~~~l~~-L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~ 166 (353)
T 2z80_A 90 TIE--EDSFSSLGS-LEHLDLSYNYLSNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQ 166 (353)
T ss_dssp EEC--TTTTTTCTT-CCEEECCSSCCSSCCHHHHTTCTTCSEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEEC
T ss_pred ccC--HhhcCCCCC-CCEEECCCCcCCcCCHhHhCCCccCCEEECCCCCCcccCchhhhccCCCCcEEECCCCccccccC
Confidence 211 112333433 8999999999999986 8899999999999999999887 4444 89999999999 577764
Q ss_pred --CCCCCCCCCEEeCcCCCCccc-cccccCCCCCcEEEcCCCCCCCcc--cccCCCCCcEEECCCCccCccc--------
Q 035577 436 --GLRELTRLRVLDLSYNRILRI-GHGLASCSSLKELYLAGNKISEVE--GLHRLLKLTVLDLRFNKISTAK-------- 502 (662)
Q Consensus 436 --~l~~L~~L~~LdLs~N~Ls~L-p~~l~~L~~L~~L~Ls~N~L~~l~--~l~~L~~L~~LdLs~N~Ls~l~-------- 502 (662)
.+..+++|++|++++|.++.+ |..+..+++|++|++++|.++.++ .+..+++|+.|+|++|.++++.
T Consensus 167 ~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~ 246 (353)
T 2z80_A 167 RKDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQHILLLEIFVDVTSSVECLELRDTDLDTFHFSELSTGE 246 (353)
T ss_dssp TTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSCSTTHHHHHHHHTTTEEEEEEESCBCTTCCCC------
T ss_pred HHHccCCCCCCEEECCCCCcCccCHHHHhccccCCeecCCCCccccchhhhhhhcccccEEECCCCcccccccccccccc
Confidence 688999999999999999976 667999999999999999998885 3556889999999999998753
Q ss_pred ---------------------cchHhhhcCCCCcEEEccCCCCCCCCChHHHHHHHHhhCccCceeecCCCCC
Q 035577 503 ---------------------CLGQLAANYNSLQAISLEGNPAQKNVGDEQLKKNLQSLLPHLVYFNWQPMKA 554 (662)
Q Consensus 503 ---------------------~l~~~l~~l~~L~~L~Ls~N~l~~~~~~~~l~~~l~~~l~~L~~Ld~~~~~~ 554 (662)
.++..+..+++|+.|+|++|.++. ++. .+...+++|++|++..+.+
T Consensus 247 ~~~~l~~l~L~~~~l~~~~l~~l~~~l~~l~~L~~L~Ls~N~l~~-i~~-----~~~~~l~~L~~L~L~~N~~ 313 (353)
T 2z80_A 247 TNSLIKKFTFRNVKITDESLFQVMKLLNQISGLLELEFSRNQLKS-VPD-----GIFDRLTSLQKIWLHTNPW 313 (353)
T ss_dssp CCCCCCEEEEESCBCCHHHHHHHHHHHHTCTTCCEEECCSSCCCC-CCT-----TTTTTCTTCCEEECCSSCB
T ss_pred ccchhhccccccccccCcchhhhHHHHhcccCCCEEECCCCCCCc-cCH-----HHHhcCCCCCEEEeeCCCc
Confidence 123445556666666666666653 222 1224456666666665543
No 73
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.76 E-value=2.2e-18 Score=204.65 Aligned_cols=160 Identities=21% Similarity=0.247 Sum_probs=130.5
Q ss_pred CccEEEccCCCCCCCCC---CCCCCCCCEEEccCCCCcccCCCcCC---CCccEEEccCCCCCCCc-------CCCCCCC
Q 035577 376 SATTVQLSNHGLVVIPF---LSAFVSLKVLNLSGNAIVRITAGALP---RGLHILNLSKNNISTIE-------GLRELTR 442 (662)
Q Consensus 376 sL~~L~Ls~N~L~~lp~---l~~L~~L~~L~Ls~N~L~~l~~~~~~---~~L~~L~Ls~N~L~~lp-------~l~~L~~ 442 (662)
.++.|++++|.++.++. +..+++|++|+|++|.++.++..... ++|++|+|++|.++.++ .|..+++
T Consensus 402 ~l~~L~ls~N~l~~l~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~l~~ 481 (844)
T 3j0a_A 402 TANLIHLSENRLENLDILYFLLRVPHLQILILNQNRFSSCSGDQTPSENPSLEQLFLGENMLQLAWETELCWDVFEGLSH 481 (844)
T ss_dssp TCCEEECCSCCCCSSTTHHHHTTCTTCCEEEEESCCCCCCCSSSSSCSCTTCCBCEEESCCCSSSCCSCCCSSCSSCBCC
T ss_pred ccceeecccCccccCchhhhhhcCCccceeeCCCCcccccccccccccCCccccccCCCCccccccccccchhhhcCccc
Confidence 35666777777766654 56889999999999999877654333 78999999999997432 4788999
Q ss_pred CCEEeCcCCCCcccccc-ccCCCCCcEEEcCCCCCCCcccccCCCCCcEEECCCCccCccccchHhhhcCCCCcEEEccC
Q 035577 443 LRVLDLSYNRILRIGHG-LASCSSLKELYLAGNKISEVEGLHRLLKLTVLDLRFNKISTAKCLGQLAANYNSLQAISLEG 521 (662)
Q Consensus 443 L~~LdLs~N~Ls~Lp~~-l~~L~~L~~L~Ls~N~L~~l~~l~~L~~L~~LdLs~N~Ls~l~~l~~~l~~l~~L~~L~Ls~ 521 (662)
|+.|+|++|.|+.+|.. |..+++|+.|+|++|+|+.++.....++|+.|+|++|+|+++. +. .+.+|+.|++++
T Consensus 482 L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~~L~~L~Ls~N~l~~~~--~~---~~~~L~~l~l~~ 556 (844)
T 3j0a_A 482 LQVLYLNHNYLNSLPPGVFSHLTALRGLSLNSNRLTVLSHNDLPANLEILDISRNQLLAPN--PD---VFVSLSVLDITH 556 (844)
T ss_dssp EECCCCCHHHHTTCCTTSSSSCCSCSEEEEESCCCSSCCCCCCCSCCCEEEEEEECCCCCC--SC---CCSSCCEEEEEE
T ss_pred ccEEECCCCcccccChhHccchhhhheeECCCCCCCccChhhhhccccEEECCCCcCCCCC--hh---HhCCcCEEEecC
Confidence 99999999999988765 8899999999999999999863333389999999999999875 33 346899999999
Q ss_pred CCCCCCCChHHHHHHHHhh
Q 035577 522 NPAQKNVGDEQLKKNLQSL 540 (662)
Q Consensus 522 N~l~~~~~~~~l~~~l~~~ 540 (662)
|++.|.|+..++..|+...
T Consensus 557 Np~~C~c~~~~f~~~~~~~ 575 (844)
T 3j0a_A 557 NKFICECELSTFINWLNHT 575 (844)
T ss_dssp ECCCCSSSCCSHHHHHHHT
T ss_pred CCcccccccHHHHHHHHhc
Confidence 9999999988888887654
No 74
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.76 E-value=8.5e-18 Score=167.95 Aligned_cols=160 Identities=29% Similarity=0.309 Sum_probs=141.1
Q ss_pred ccEEEccCCCCCCCCCCCCCCCCCEEEccCCCCcccCC-CcCC--CCccEEEccCCCCCCCc--CCCCCCCCCEEeCcCC
Q 035577 377 ATTVQLSNHGLVVIPFLSAFVSLKVLNLSGNAIVRITA-GALP--RGLHILNLSKNNISTIE--GLRELTRLRVLDLSYN 451 (662)
Q Consensus 377 L~~L~Ls~N~L~~lp~l~~L~~L~~L~Ls~N~L~~l~~-~~~~--~~L~~L~Ls~N~L~~lp--~l~~L~~L~~LdLs~N 451 (662)
-+.|++++|.++.+|. .-...+++|+|++|.|+.++. ..|. ++|++|+|++|.|+.++ .|..+++|++|+|++|
T Consensus 13 ~~~l~~s~n~l~~iP~-~~~~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N 91 (220)
T 2v70_A 13 GTTVDCSNQKLNKIPE-HIPQYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSN 91 (220)
T ss_dssp TTEEECCSSCCSSCCS-CCCTTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSS
T ss_pred CCEeEeCCCCcccCcc-CCCCCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCCC
Confidence 4589999999999996 223467899999999999854 4444 89999999999999886 5999999999999999
Q ss_pred CCcccccc-ccCCCCCcEEEcCCCCCCCcc--cccCCCCCcEEECCCCccCccccchHhhhcCCCCcEEEccCCCCCCCC
Q 035577 452 RILRIGHG-LASCSSLKELYLAGNKISEVE--GLHRLLKLTVLDLRFNKISTAKCLGQLAANYNSLQAISLEGNPAQKNV 528 (662)
Q Consensus 452 ~Ls~Lp~~-l~~L~~L~~L~Ls~N~L~~l~--~l~~L~~L~~LdLs~N~Ls~l~~l~~~l~~l~~L~~L~Ls~N~l~~~~ 528 (662)
.|+.++.. |..+++|++|+|++|+|+.++ .+..+++|+.|+|++|+|+.+. +..+..+++|+.|+|++|+|.|.|
T Consensus 92 ~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~--~~~~~~l~~L~~L~L~~N~l~c~c 169 (220)
T 2v70_A 92 RLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVA--PGAFDTLHSLSTLNLLANPFNCNC 169 (220)
T ss_dssp CCCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBC--TTTTTTCTTCCEEECCSCCEECSG
T ss_pred ccCccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCCcCCEEC--HHHhcCCCCCCEEEecCcCCcCCC
Confidence 99988765 899999999999999999983 6889999999999999999985 677889999999999999999999
Q ss_pred ChHHHHHHHHh
Q 035577 529 GDEQLKKNLQS 539 (662)
Q Consensus 529 ~~~~l~~~l~~ 539 (662)
+..++..|+..
T Consensus 170 ~l~~l~~~~~~ 180 (220)
T 2v70_A 170 YLAWLGEWLRK 180 (220)
T ss_dssp GGHHHHHHHHH
T ss_pred chHHHHHHHHh
Confidence 98888877763
No 75
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.76 E-value=2.8e-18 Score=192.42 Aligned_cols=271 Identities=11% Similarity=0.110 Sum_probs=161.8
Q ss_pred cCcccCcccccccCCCCCccCCC--CCCCCCCceeecCCccCCCcchhhhcCCCCCCCCcccCCCCCCCCccC-----Cc
Q 035577 272 CNYSALAKDWVMPDENSVKKLQG--ESLHEQWDKLPSKHFKIKRIKEWVNDLQHCSPLEESDETSVSNDQVKR-----DP 344 (662)
Q Consensus 272 ~~l~~L~~~~L~ls~N~I~~L~~--~s~l~~L~~L~l~~~si~~L~~~~~~L~~l~~L~~L~~l~ls~n~L~~-----~p 344 (662)
..+..|.. ++++.|.+..++. +..+.+|+.|++.+|.+..++.. .+..+..|+.|+ ++.+.+.. ..
T Consensus 47 ~~l~~L~~--L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~--~~~~l~~L~~L~---Ls~n~l~~~~~~~~~ 119 (549)
T 2z81_A 47 RACANLQV--LILKSSRINTIEGDAFYSLGSLEHLDLSDNHLSSLSSS--WFGPLSSLKYLN---LMGNPYQTLGVTSLF 119 (549)
T ss_dssp SSCTTCCE--EECTTSCCCEECTTTTTTCTTCCEEECTTSCCCSCCHH--HHTTCTTCCEEE---CTTCCCSSSCSSCSC
T ss_pred hcCCcccE--EECCCCCcCccChhhccccccCCEEECCCCccCccCHH--HhccCCCCcEEE---CCCCcccccchhhhh
Confidence 34455665 7777777777764 66777788888888777766532 133344444433 34444432 22
Q ss_pred ccCCCCCceeeCCcc-ccchhhhHHHhhhccCCccEEEccCCCCCC-CCC-CCCCCCCCEEEccCCCCcccCCCcC--CC
Q 035577 345 KVLNGSTAVKVDGKV-TAGMEAVTKYISSLSASATTVQLSNHGLVV-IPF-LSAFVSLKVLNLSGNAIVRITAGAL--PR 419 (662)
Q Consensus 345 ~~l~~L~~L~l~~~~-~~~l~~l~~~l~~l~~sL~~L~Ls~N~L~~-lp~-l~~L~~L~~L~Ls~N~L~~l~~~~~--~~ 419 (662)
..+.+|+.|++.++. ...+. ...+..++. |+.|+|++|.++. +|. +..+++|++|++++|.+..++...+ .+
T Consensus 120 ~~l~~L~~L~L~~n~~~~~~~--~~~~~~l~~-L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~ 196 (549)
T 2z81_A 120 PNLTNLQTLRIGNVETFSEIR--RIDFAGLTS-LNELEIKALSLRNYQSQSLKSIRDIHHLTLHLSESAFLLEIFADILS 196 (549)
T ss_dssp TTCTTCCEEEEEESSSCCEEC--TTTTTTCCE-EEEEEEEETTCCEECTTTTTTCSEEEEEEEECSBSTTHHHHHHHSTT
T ss_pred hccCCccEEECCCCccccccC--Hhhhhcccc-cCeeeccCCcccccChhhhhccccCceEecccCcccccchhhHhhcc
Confidence 335667777776653 22221 123334443 7788888888774 343 7778888888888887766554322 26
Q ss_pred CccEEEccCCCCCCCc-----CCCCC------------------------------------------------------
Q 035577 420 GLHILNLSKNNISTIE-----GLREL------------------------------------------------------ 440 (662)
Q Consensus 420 ~L~~L~Ls~N~L~~lp-----~l~~L------------------------------------------------------ 440 (662)
+|++|+|++|+++.++ ....+
T Consensus 197 ~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~ 276 (549)
T 2z81_A 197 SVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYILELSEVEFDDCTLNGLGDFNPSESDV 276 (549)
T ss_dssp TBSEEEEESCBCTTCCCCCCSSCCCCCCCCEEEEESCEEEHHHHHHHHGGGGGCTTCCEEEEESCEEECCSCCCCCTTTC
T ss_pred cccEEEccCCccccccccccchhhhhhcccceeccccccchhHHHHHHHHhhhhccccccccccccccccccccccchhh
Confidence 8899999998887641 01111
Q ss_pred ---------------------------------CCCCEEeCcCCCCccccccc-cCCCCCcEEEcCCCCCCCc-c----c
Q 035577 441 ---------------------------------TRLRVLDLSYNRILRIGHGL-ASCSSLKELYLAGNKISEV-E----G 481 (662)
Q Consensus 441 ---------------------------------~~L~~LdLs~N~Ls~Lp~~l-~~L~~L~~L~Ls~N~L~~l-~----~ 481 (662)
.+|+.|++++|.+..+|..+ ..+++|++|+|++|.+++. + .
T Consensus 277 ~~~l~~L~~L~l~~~~i~~~~~~~~l~~~~~~~~~L~~L~l~~n~l~~ip~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~ 356 (549)
T 2z81_A 277 VSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENSKVFLVPCSFSQHLKSLEFLDLSENLMVEEYLKNSAC 356 (549)
T ss_dssp CCCCTTCCEEEEESCBCSCGGGSCCCCHHHHHSTTCCEEEEESSCCCCCCHHHHHHCTTCCEEECCSSCCCHHHHHHHTC
T ss_pred hhhhcccccccccccccchhhhcccchhhhhhcccceEEEeccCccccCCHHHHhcCccccEEEccCCccccccccchhh
Confidence 23555555555555565554 4567777777777777653 1 2
Q ss_pred ccCCCCCcEEECCCCccCccccchHhhhcCCCCcEEEccCCCCCCCCChHHHHHHHHhhCccCceeecCCCCCCcccc
Q 035577 482 LHRLLKLTVLDLRFNKISTAKCLGQLAANYNSLQAISLEGNPAQKNVGDEQLKKNLQSLLPHLVYFNWQPMKASTLKD 559 (662)
Q Consensus 482 l~~L~~L~~LdLs~N~Ls~l~~l~~~l~~l~~L~~L~Ls~N~l~~~~~~~~l~~~l~~~l~~L~~Ld~~~~~~~~l~~ 559 (662)
+..+++|+.|+|++|+|+.++..+..+..+++|++|+|++|.++. +|. ....+++|++|++..+.+..++.
T Consensus 357 ~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~-lp~------~~~~~~~L~~L~Ls~N~l~~l~~ 427 (549)
T 2z81_A 357 KGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRNTFHP-MPD------SCQWPEKMRFLNLSSTGIRVVKT 427 (549)
T ss_dssp TTSSTTCCEEECTTSCCCCHHHHHHHGGGCTTCCEEECTTCCCCC-CCS------CCCCCTTCCEEECTTSCCSCCCT
T ss_pred hhccccCcEEEccCCcccccccchhhhhcCCCCCEEECCCCCCcc-CCh------hhcccccccEEECCCCCcccccc
Confidence 556677777777777777664223456667777777777777763 222 12345666666666666554443
No 76
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.76 E-value=2.8e-18 Score=194.24 Aligned_cols=162 Identities=22% Similarity=0.286 Sum_probs=137.5
Q ss_pred ccEEEccCCCCCCCC---CCCCCCCCCEEEccCCCCcccCCCcCC--CCccEEEccCCCCCC--Cc-CCCCCCCCCEEeC
Q 035577 377 ATTVQLSNHGLVVIP---FLSAFVSLKVLNLSGNAIVRITAGALP--RGLHILNLSKNNIST--IE-GLRELTRLRVLDL 448 (662)
Q Consensus 377 L~~L~Ls~N~L~~lp---~l~~L~~L~~L~Ls~N~L~~l~~~~~~--~~L~~L~Ls~N~L~~--lp-~l~~L~~L~~LdL 448 (662)
++.+++..+.+..+. .+..+.+|+.++++.|.+..+....+. +.|+.|+|++|.+.. +| .|..+++|++|+|
T Consensus 422 L~~l~l~~~~~~~~~~~~~~~~l~~l~~l~ls~n~l~~~~~~~~~~~~~L~~L~Ls~N~~~~~~~~~~~~~l~~L~~L~L 501 (635)
T 4g8a_A 422 LEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDL 501 (635)
T ss_dssp CCEEECTTSEEESTTSSCTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEEC
T ss_pred ccchhhhhccccccccccccccccccccccccccccccccccccccchhhhhhhhhhcccccccCchhhhhccccCEEEC
Confidence 677777777655332 278888999999999999888776665 899999999997543 34 6899999999999
Q ss_pred cCCCCcccc-ccccCCCCCcEEEcCCCCCCCcc--cccCCCCCcEEECCCCccCccccchHhhhcC-CCCcEEEccCCCC
Q 035577 449 SYNRILRIG-HGLASCSSLKELYLAGNKISEVE--GLHRLLKLTVLDLRFNKISTAKCLGQLAANY-NSLQAISLEGNPA 524 (662)
Q Consensus 449 s~N~Ls~Lp-~~l~~L~~L~~L~Ls~N~L~~l~--~l~~L~~L~~LdLs~N~Ls~l~~l~~~l~~l-~~L~~L~Ls~N~l 524 (662)
++|+|+.++ ..|..+++|++|+|++|+|++++ .+..+++|++|+|++|+|+.+. +..+..+ ++|+.|+|++|||
T Consensus 502 s~N~L~~l~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~--~~~l~~l~~~L~~L~L~~Np~ 579 (635)
T 4g8a_A 502 SQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSK--KQELQHFPSSLAFLNLTQNDF 579 (635)
T ss_dssp TTSCCCEECTTTTTTCTTCCEEECTTSCCCBCCCGGGTTCTTCCEEECTTSCCCBCC--SSCTTCCCTTCCEEECTTCCB
T ss_pred CCCccCCcChHHHcCCCCCCEEECCCCcCCCCChhHHhCCCCCCEEECCCCcCCCCC--HHHHHhhhCcCCEEEeeCCCC
Confidence 999999875 45999999999999999999984 5889999999999999999985 6667777 6899999999999
Q ss_pred CCCCChHHHHHHHHhh
Q 035577 525 QKNVGDEQLKKNLQSL 540 (662)
Q Consensus 525 ~~~~~~~~l~~~l~~~ 540 (662)
.|+|...++..|+...
T Consensus 580 ~C~C~~~~~~~wl~~~ 595 (635)
T 4g8a_A 580 ACTCEHQSFLQWIKDQ 595 (635)
T ss_dssp CCSGGGHHHHHHHHHT
T ss_pred cccCCcHHHHHHHHhC
Confidence 9999999999998653
No 77
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.76 E-value=2.1e-17 Score=167.74 Aligned_cols=171 Identities=23% Similarity=0.316 Sum_probs=150.0
Q ss_pred CccEEEccCCCCCCCCC-CCCCCCCCEEEccCCCCcccCCCcCC--CCccEEEccCCCCCCCc--CCCCCCCCCEEeCcC
Q 035577 376 SATTVQLSNHGLVVIPF-LSAFVSLKVLNLSGNAIVRITAGALP--RGLHILNLSKNNISTIE--GLRELTRLRVLDLSY 450 (662)
Q Consensus 376 sL~~L~Ls~N~L~~lp~-l~~L~~L~~L~Ls~N~L~~l~~~~~~--~~L~~L~Ls~N~L~~lp--~l~~L~~L~~LdLs~ 450 (662)
..+.++++++.++.+|. +. +.|+.|+|++|.|+.++...+. ++|++|+|++|.|+.++ .|..+++|++|+|++
T Consensus 15 ~~~~l~~~~~~l~~~p~~~~--~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~ 92 (251)
T 3m19_A 15 GKKEVDCQGKSLDSVPSGIP--ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLAN 92 (251)
T ss_dssp GGTEEECTTCCCSSCCSCCC--TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTT
T ss_pred CCeEEecCCCCccccCCCCC--CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEECCC
Confidence 36799999999999996 43 6899999999999999887776 89999999999999886 489999999999999
Q ss_pred CCCcccccc-ccCCCCCcEEEcCCCCCCCcc--cccCCCCCcEEECCCCccCccccchHhhhcCCCCcEEEccCCCCCCC
Q 035577 451 NRILRIGHG-LASCSSLKELYLAGNKISEVE--GLHRLLKLTVLDLRFNKISTAKCLGQLAANYNSLQAISLEGNPAQKN 527 (662)
Q Consensus 451 N~Ls~Lp~~-l~~L~~L~~L~Ls~N~L~~l~--~l~~L~~L~~LdLs~N~Ls~l~~l~~~l~~l~~L~~L~Ls~N~l~~~ 527 (662)
|.|+.+|.. |..+++|++|+|++|.|+.++ .+..+++|+.|+|++|.|+.++ +..+..+++|+.|+|++|.+.+.
T Consensus 93 n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~--~~~~~~l~~L~~L~L~~N~l~~~ 170 (251)
T 3m19_A 93 NQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIP--AGAFDKLTNLQTLSLSTNQLQSV 170 (251)
T ss_dssp SCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCC--TTTTTTCTTCCEEECCSSCCSCC
T ss_pred CcccccChhHhcccCCCCEEEcCCCcCCCcChhHhccCCcccEEECcCCcCCccC--HHHcCcCcCCCEEECCCCcCCcc
Confidence 999988765 789999999999999999986 3788999999999999999885 55678999999999999999875
Q ss_pred CChHHHHHHHHhhCccCceeecCCCCCCc
Q 035577 528 VGDEQLKKNLQSLLPHLVYFNWQPMKAST 556 (662)
Q Consensus 528 ~~~~~l~~~l~~~l~~L~~Ld~~~~~~~~ 556 (662)
.+. ....+++|++|++..+.+.-
T Consensus 171 ~~~------~~~~l~~L~~L~l~~N~~~c 193 (251)
T 3m19_A 171 PHG------AFDRLGKLQTITLFGNQFDC 193 (251)
T ss_dssp CTT------TTTTCTTCCEEECCSCCBCT
T ss_pred CHH------HHhCCCCCCEEEeeCCceeC
Confidence 442 34568999999999988643
No 78
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.75 E-value=2.3e-18 Score=192.33 Aligned_cols=214 Identities=23% Similarity=0.217 Sum_probs=167.5
Q ss_pred CCCCceeecCCccCCCcchhhhcCCCCCCCCcccCCCCCCCCccCCcccCCCCCceeeCCccccchhhhHHHhhhccCCc
Q 035577 298 HEQWDKLPSKHFKIKRIKEWVNDLQHCSPLEESDETSVSNDQVKRDPKVLNGSTAVKVDGKVTAGMEAVTKYISSLSASA 377 (662)
Q Consensus 298 l~~L~~L~l~~~si~~L~~~~~~L~~l~~L~~L~~l~ls~n~L~~~p~~l~~L~~L~l~~~~~~~l~~l~~~l~~l~~sL 377 (662)
+++|+.|++.+|.+..++. ..+.. +.+|+.|+++++.+.+... +..++. |
T Consensus 33 ~~~L~~L~Ls~n~l~~~~~--~~~~~-----------------------l~~L~~L~Ls~N~l~~~~~----l~~l~~-L 82 (487)
T 3oja_A 33 AWNVKELDLSGNPLSQISA--ADLAP-----------------------FTKLELLNLSSNVLYETLD----LESLST-L 82 (487)
T ss_dssp GGGCCEEECCSSCCCCCCG--GGGTT-----------------------CTTCCEEECTTSCCEEEEE----CTTCTT-C
T ss_pred CCCccEEEeeCCcCCCCCH--HHHhC-----------------------CCCCCEEEeeCCCCCCCcc----cccCCC-C
Confidence 3467777777777766542 11222 3445555555543332221 334443 9
Q ss_pred cEEEccCCCCCCCCCCCCCCCCCEEEccCCCCcccCCCcCCCCccEEEccCCCCCCCc--CCCCCCCCCEEeCcCCCCcc
Q 035577 378 TTVQLSNHGLVVIPFLSAFVSLKVLNLSGNAIVRITAGALPRGLHILNLSKNNISTIE--GLRELTRLRVLDLSYNRILR 455 (662)
Q Consensus 378 ~~L~Ls~N~L~~lp~l~~L~~L~~L~Ls~N~L~~l~~~~~~~~L~~L~Ls~N~L~~lp--~l~~L~~L~~LdLs~N~Ls~ 455 (662)
+.|+|++|.|+.+|. .++|++|+|++|.|+.++...+ ++|+.|+|++|.|+.++ .+..+++|++|+|++|.|+.
T Consensus 83 ~~L~Ls~N~l~~l~~---~~~L~~L~L~~N~l~~~~~~~l-~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~ 158 (487)
T 3oja_A 83 RTLDLNNNYVQELLV---GPSIETLHAANNNISRVSCSRG-QGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDT 158 (487)
T ss_dssp CEEECCSSEEEEEEE---CTTCCEEECCSSCCCCEEECCC-SSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCE
T ss_pred CEEEecCCcCCCCCC---CCCcCEEECcCCcCCCCCcccc-CCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCC
Confidence 999999999998774 3899999999999999887655 58999999999999874 68889999999999999996
Q ss_pred c-ccccc-CCCCCcEEEcCCCCCCCcccccCCCCCcEEECCCCccCccccchHhhhcCCCCcEEEccCCCCCCCCChHHH
Q 035577 456 I-GHGLA-SCSSLKELYLAGNKISEVEGLHRLLKLTVLDLRFNKISTAKCLGQLAANYNSLQAISLEGNPAQKNVGDEQL 533 (662)
Q Consensus 456 L-p~~l~-~L~~L~~L~Ls~N~L~~l~~l~~L~~L~~LdLs~N~Ls~l~~l~~~l~~l~~L~~L~Ls~N~l~~~~~~~~l 533 (662)
+ |..+. .+++|+.|+|++|.|++++.+..+++|+.|+|++|.|++++ ..+..+++|+.|+|++|.+++ +|.
T Consensus 159 ~~~~~l~~~l~~L~~L~Ls~N~l~~~~~~~~l~~L~~L~Ls~N~l~~~~---~~~~~l~~L~~L~Ls~N~l~~-lp~--- 231 (487)
T 3oja_A 159 VNFAELAASSDTLEHLNLQYNFIYDVKGQVVFAKLKTLDLSSNKLAFMG---PEFQSAAGVTWISLRNNKLVL-IEK--- 231 (487)
T ss_dssp EEGGGGGGGTTTCCEEECTTSCCCEEECCCCCTTCCEEECCSSCCCEEC---GGGGGGTTCSEEECTTSCCCE-ECT---
T ss_pred cChHHHhhhCCcccEEecCCCccccccccccCCCCCEEECCCCCCCCCC---HhHcCCCCccEEEecCCcCcc-cch---
Confidence 4 55565 79999999999999999987888999999999999999874 346889999999999999986 332
Q ss_pred HHHHHhhCccCceeecCCCCCC
Q 035577 534 KKNLQSLLPHLVYFNWQPMKAS 555 (662)
Q Consensus 534 ~~~l~~~l~~L~~Ld~~~~~~~ 555 (662)
....+++|+.|++..+.+.
T Consensus 232 ---~l~~l~~L~~L~l~~N~l~ 250 (487)
T 3oja_A 232 ---ALRFSQNLEHFDLRGNGFH 250 (487)
T ss_dssp ---TCCCCTTCCEEECTTCCBC
T ss_pred ---hhccCCCCCEEEcCCCCCc
Confidence 1456789999999999876
No 79
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.75 E-value=6.8e-18 Score=169.73 Aligned_cols=191 Identities=14% Similarity=0.128 Sum_probs=139.8
Q ss_pred CCCCceeeCCccccchhhhHHHhhhccCCccEEEccCCC-CCCCCC--CCCCCCCCEEEccC-CCCcccCCCcCC--CCc
Q 035577 348 NGSTAVKVDGKVTAGMEAVTKYISSLSASATTVQLSNHG-LVVIPF--LSAFVSLKVLNLSG-NAIVRITAGALP--RGL 421 (662)
Q Consensus 348 ~~L~~L~l~~~~~~~l~~l~~~l~~l~~sL~~L~Ls~N~-L~~lp~--l~~L~~L~~L~Ls~-N~L~~l~~~~~~--~~L 421 (662)
..|+.|++.++....+.. ..+..++. |+.|+|++|. ++.++. |..+++|++|+|++ |.|+.++...|. ++|
T Consensus 31 ~~l~~L~l~~n~l~~i~~--~~~~~l~~-L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L 107 (239)
T 2xwt_C 31 PSTQTLKLIETHLRTIPS--HAFSNLPN-ISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLL 107 (239)
T ss_dssp TTCCEEEEESCCCSEECT--TTTTTCTT-CCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTC
T ss_pred CcccEEEEeCCcceEECH--HHccCCCC-CcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCC
Confidence 467777777755544432 12334443 8888888886 887764 77888888888887 888888776654 688
Q ss_pred cEEEccCCCCCCCcCCCCCCCCC---EEeCcCC-CCcccccc-ccCCCCCc-EEEcCCCCCCCcc-cccCCCCCcEEECC
Q 035577 422 HILNLSKNNISTIEGLRELTRLR---VLDLSYN-RILRIGHG-LASCSSLK-ELYLAGNKISEVE-GLHRLLKLTVLDLR 494 (662)
Q Consensus 422 ~~L~Ls~N~L~~lp~l~~L~~L~---~LdLs~N-~Ls~Lp~~-l~~L~~L~-~L~Ls~N~L~~l~-~l~~L~~L~~LdLs 494 (662)
++|+|++|.|+.+|.+..+++|+ +|++++| .++.+|.. |..+++|+ .|+|++|.|+.++ .....++|+.|+|+
T Consensus 108 ~~L~l~~n~l~~lp~~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l~~i~~~~~~~~~L~~L~L~ 187 (239)
T 2xwt_C 108 KFLGIFNTGLKMFPDLTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFTSVQGYAFNGTKLDAVYLN 187 (239)
T ss_dssp CEEEEEEECCCSCCCCTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCCCCEECTTTTTTCEEEEEECT
T ss_pred CEEeCCCCCCccccccccccccccccEEECCCCcchhhcCcccccchhcceeEEEcCCCCCcccCHhhcCCCCCCEEEcC
Confidence 88888888888888788888887 8888888 88888765 77888888 8888888888775 22233788888888
Q ss_pred CCc-cCccccchHhhhcC-CCCcEEEccCCCCCCCCChHHHHHHHHhhCccCceeecCCC
Q 035577 495 FNK-ISTAKCLGQLAANY-NSLQAISLEGNPAQKNVGDEQLKKNLQSLLPHLVYFNWQPM 552 (662)
Q Consensus 495 ~N~-Ls~l~~l~~~l~~l-~~L~~L~Ls~N~l~~~~~~~~l~~~l~~~l~~L~~Ld~~~~ 552 (662)
+|+ |+.++ +..+..+ ++|+.|+|++|+++.. +. ..+++|+.|++.++
T Consensus 188 ~n~~l~~i~--~~~~~~l~~~L~~L~l~~N~l~~l-~~--------~~~~~L~~L~l~~~ 236 (239)
T 2xwt_C 188 KNKYLTVID--KDAFGGVYSGPSLLDVSQTSVTAL-PS--------KGLEHLKELIARNT 236 (239)
T ss_dssp TCTTCCEEC--TTTTTTCSBCCSEEECTTCCCCCC-CC--------TTCTTCSEEECTTC
T ss_pred CCCCcccCC--HHHhhccccCCcEEECCCCccccC-Ch--------hHhccCceeeccCc
Confidence 884 88774 4566777 8888888888888753 22 14667777776644
No 80
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.75 E-value=7.3e-19 Score=184.40 Aligned_cols=175 Identities=21% Similarity=0.227 Sum_probs=122.4
Q ss_pred CCCCCceeeCCccccchhhhHHHhhh-ccCCccEEEccCCCCCCCCC--CCCCCCCCEEEccCCCCccc---CCCc---C
Q 035577 347 LNGSTAVKVDGKVTAGMEAVTKYISS-LSASATTVQLSNHGLVVIPF--LSAFVSLKVLNLSGNAIVRI---TAGA---L 417 (662)
Q Consensus 347 l~~L~~L~l~~~~~~~l~~l~~~l~~-l~~sL~~L~Ls~N~L~~lp~--l~~L~~L~~L~Ls~N~L~~l---~~~~---~ 417 (662)
+.+|+.|++.++....+......+.. ....|++|+|++|.|+.++. |..+++|++|+|++|.+... +... -
T Consensus 120 l~~L~~L~Ls~N~l~~~~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~ 199 (312)
T 1wwl_A 120 GPDLNILNLRNVSWATRDAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISALCPLK 199 (312)
T ss_dssp SCCCSEEEEESCBCSSSSSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCCSSCCEEECCSCTTCHHHHHHHHSCTTS
T ss_pred CCCccEEEccCCCCcchhHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccCCCCCEEECCCCCcCcchHHHHHHHhcc
Confidence 56677777777665554222222211 12458888888888887763 88888888888888886532 1111 1
Q ss_pred CCCccEEEccCCCCCCCcC-----CCCCCCCCEEeCcCCCCcccc--ccccCCCCCcEEEcCCCCCCCcccccCCCCCcE
Q 035577 418 PRGLHILNLSKNNISTIEG-----LRELTRLRVLDLSYNRILRIG--HGLASCSSLKELYLAGNKISEVEGLHRLLKLTV 490 (662)
Q Consensus 418 ~~~L~~L~Ls~N~L~~lp~-----l~~L~~L~~LdLs~N~Ls~Lp--~~l~~L~~L~~L~Ls~N~L~~l~~l~~L~~L~~ 490 (662)
.++|++|+|++|+|+.++. +..+++|++|+|++|.|+.++ ..+..+++|++|+|++|.|+.+|.... ++|+.
T Consensus 200 l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~N~l~~ip~~~~-~~L~~ 278 (312)
T 1wwl_A 200 FPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLKQVPKGLP-AKLSV 278 (312)
T ss_dssp CTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCCCSCCCCCTTCCEEECTTSCCSSCCSSCC-SEEEE
T ss_pred CCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCcccchhhhhhcCCCCEEECCCCccChhhhhcc-CCceE
Confidence 2688888888888886532 356788888888888888654 346667888888888888887763222 78888
Q ss_pred EECCCCccCccccchHhhhcCCCCcEEEccCCCCCC
Q 035577 491 LDLRFNKISTAKCLGQLAANYNSLQAISLEGNPAQK 526 (662)
Q Consensus 491 LdLs~N~Ls~l~~l~~~l~~l~~L~~L~Ls~N~l~~ 526 (662)
|+|++|+|++++ . +..+++|++|+|++|+|++
T Consensus 279 L~Ls~N~l~~~p---~-~~~l~~L~~L~L~~N~l~~ 310 (312)
T 1wwl_A 279 LDLSYNRLDRNP---S-PDELPQVGNLSLKGNPFLD 310 (312)
T ss_dssp EECCSSCCCSCC---C-TTTSCEEEEEECTTCTTTC
T ss_pred EECCCCCCCCCh---h-HhhCCCCCEEeccCCCCCC
Confidence 888888888773 3 5678888888888888875
No 81
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.74 E-value=3.4e-17 Score=184.05 Aligned_cols=148 Identities=18% Similarity=0.150 Sum_probs=82.3
Q ss_pred CccEEEccCCCCCCCCC-CCCCCCCCEEEccCCCCcccCCCcCCCCccEEEccCCCCCCCcCCCCCCCCCEEeCcCCCCc
Q 035577 376 SATTVQLSNHGLVVIPF-LSAFVSLKVLNLSGNAIVRITAGALPRGLHILNLSKNNISTIEGLRELTRLRVLDLSYNRIL 454 (662)
Q Consensus 376 sL~~L~Ls~N~L~~lp~-l~~L~~L~~L~Ls~N~L~~l~~~~~~~~L~~L~Ls~N~L~~lp~l~~L~~L~~LdLs~N~Ls 454 (662)
.|+.|++++|.++.+|. +..+ +|++|++++|.+..++...+ ++|+.|++++|.+........+++|++|++++|.++
T Consensus 283 ~L~~L~l~~~~l~~l~~~~~~~-~L~~L~l~~n~~~~l~~~~l-~~L~~L~l~~n~~~~~~~~~~~~~L~~L~l~~n~l~ 360 (570)
T 2z63_A 283 NVSSFSLVSVTIERVKDFSYNF-GWQHLELVNCKFGQFPTLKL-KSLKRLTFTSNKGGNAFSEVDLPSLEFLDLSRNGLS 360 (570)
T ss_dssp TCSEEEEESCEECSCCBCCSCC-CCSEEEEESCBCSSCCBCBC-SSCCEEEEESCBSCCBCCCCBCTTCCEEECCSSCCB
T ss_pred cccEEEecCccchhhhhhhccC-CccEEeeccCcccccCcccc-cccCEEeCcCCccccccccccCCCCCEEeCcCCccC
Confidence 48888888888888876 6666 88888888888887765432 355556555555554333344555555555555554
Q ss_pred cc---cccccCCCCCcEEEcCCCCCCCcc-cccCCCCCcEEECCCCccCccccchHhhhcCCCCcEEEccCCCCCC
Q 035577 455 RI---GHGLASCSSLKELYLAGNKISEVE-GLHRLLKLTVLDLRFNKISTAKCLGQLAANYNSLQAISLEGNPAQK 526 (662)
Q Consensus 455 ~L---p~~l~~L~~L~~L~Ls~N~L~~l~-~l~~L~~L~~LdLs~N~Ls~l~~l~~~l~~l~~L~~L~Ls~N~l~~ 526 (662)
.+ |..+..+++|++|++++|.+..++ .+..+++|+.|++++|.+..... ...+..+++|++|++++|.+.+
T Consensus 361 ~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~l~~L~~L~l~~n~l~~~~~-~~~~~~l~~L~~L~l~~n~l~~ 435 (570)
T 2z63_A 361 FKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSE-FSVFLSLRNLIYLDISHTHTRV 435 (570)
T ss_dssp EEEEEEHHHHTCSCCCEEECCSCSEEEEEEEEETCTTCCEEECTTSEEESCTT-SCTTTTCTTCCEEECTTSCCEE
T ss_pred ccccccccccccCccCEEECCCCccccccccccccCCCCEEEccCCccccccc-hhhhhcCCCCCEEeCcCCcccc
Confidence 33 333445555555555555554442 24444455555555554444321 1223444444444444444443
No 82
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.74 E-value=1.2e-17 Score=173.93 Aligned_cols=145 Identities=30% Similarity=0.331 Sum_probs=77.3
Q ss_pred ccEEEccCCCCCCCCCCCCCCCCCEEEccCCCCcccCCCcCCCCccEEEccCCCCCCCcCCCCCCCCCEEeCcCCCCccc
Q 035577 377 ATTVQLSNHGLVVIPFLSAFVSLKVLNLSGNAIVRITAGALPRGLHILNLSKNNISTIEGLRELTRLRVLDLSYNRILRI 456 (662)
Q Consensus 377 L~~L~Ls~N~L~~lp~l~~L~~L~~L~Ls~N~L~~l~~~~~~~~L~~L~Ls~N~L~~lp~l~~L~~L~~LdLs~N~Ls~L 456 (662)
|+.|+|++|.|+.++.+..+++|++|+|++|.|+.++.....++|++|+|++|+|+.++.+..+++|++|++++|.|+.+
T Consensus 70 L~~L~L~~n~l~~~~~l~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~L~~n~i~~~~~l~~l~~L~~L~l~~n~l~~~ 149 (291)
T 1h6t_A 70 VTKLFLNGNKLTDIKPLANLKNLGWLFLDENKVKDLSSLKDLKKLKSLSLEHNGISDINGLVHLPQLESLYLGNNKITDI 149 (291)
T ss_dssp CCEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCCGGGGTTCTTCCEEECTTSCCCCCGGGGGCTTCCEEECCSSCCCCC
T ss_pred CCEEEccCCccCCCcccccCCCCCEEECCCCcCCCChhhccCCCCCEEECCCCcCCCChhhcCCCCCCEEEccCCcCCcc
Confidence 55555555555555445555555555555555555443222245555555555555555555555555555555555555
Q ss_pred cccccCCCCCcEEEcCCCCCCCcccccCCCCCcEEECCCCccCccccchHhhhcCCCCcEEEccCCCCCC
Q 035577 457 GHGLASCSSLKELYLAGNKISEVEGLHRLLKLTVLDLRFNKISTAKCLGQLAANYNSLQAISLEGNPAQK 526 (662)
Q Consensus 457 p~~l~~L~~L~~L~Ls~N~L~~l~~l~~L~~L~~LdLs~N~Ls~l~~l~~~l~~l~~L~~L~Ls~N~l~~ 526 (662)
..+..+++|+.|+|++|.|++++.+..+++|+.|+|++|.|++++ . +..+++|+.|+|++|++..
T Consensus 150 -~~l~~l~~L~~L~L~~N~l~~~~~l~~l~~L~~L~L~~N~i~~l~---~-l~~l~~L~~L~l~~n~i~~ 214 (291)
T 1h6t_A 150 -TVLSRLTKLDTLSLEDNQISDIVPLAGLTKLQNLYLSKNHISDLR---A-LAGLKNLDVLELFSQECLN 214 (291)
T ss_dssp -GGGGGCTTCSEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCBCG---G-GTTCTTCSEEEEEEEEEEC
T ss_pred -hhhccCCCCCEEEccCCccccchhhcCCCccCEEECCCCcCCCCh---h-hccCCCCCEEECcCCcccC
Confidence 245555555555555555555544555555555555555555542 1 3445555555555555543
No 83
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.74 E-value=2.6e-17 Score=171.44 Aligned_cols=171 Identities=26% Similarity=0.307 Sum_probs=152.6
Q ss_pred ccEEEccCCCCCCCCCCCCCCCCCEEEccCCCCcccCCCcCCCCccEEEccCCCCCCCcCCCCCCCCCEEeCcCCCCccc
Q 035577 377 ATTVQLSNHGLVVIPFLSAFVSLKVLNLSGNAIVRITAGALPRGLHILNLSKNNISTIEGLRELTRLRVLDLSYNRILRI 456 (662)
Q Consensus 377 L~~L~Ls~N~L~~lp~l~~L~~L~~L~Ls~N~L~~l~~~~~~~~L~~L~Ls~N~L~~lp~l~~L~~L~~LdLs~N~Ls~L 456 (662)
|+.|++++|.++.++.+..+++|++|+|++|.|+.++.....++|++|+|++|.|+.++.+..+++|++|+|++|.|+.+
T Consensus 48 L~~L~l~~~~i~~~~~~~~l~~L~~L~L~~n~l~~~~~l~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~L~~n~i~~~ 127 (291)
T 1h6t_A 48 IDQIIANNSDIKSVQGIQYLPNVTKLFLNGNKLTDIKPLANLKNLGWLFLDENKVKDLSSLKDLKKLKSLSLEHNGISDI 127 (291)
T ss_dssp CCEEECTTSCCCCCTTGGGCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCCGGGGTTCTTCCEEECTTSCCCCC
T ss_pred ccEEEccCCCcccChhHhcCCCCCEEEccCCccCCCcccccCCCCCEEECCCCcCCCChhhccCCCCCEEECCCCcCCCC
Confidence 89999999999999999999999999999999998876323389999999999999999999999999999999999998
Q ss_pred cccccCCCCCcEEEcCCCCCCCcccccCCCCCcEEECCCCccCccccchHhhhcCCCCcEEEccCCCCCCCCChHHHHHH
Q 035577 457 GHGLASCSSLKELYLAGNKISEVEGLHRLLKLTVLDLRFNKISTAKCLGQLAANYNSLQAISLEGNPAQKNVGDEQLKKN 536 (662)
Q Consensus 457 p~~l~~L~~L~~L~Ls~N~L~~l~~l~~L~~L~~LdLs~N~Ls~l~~l~~~l~~l~~L~~L~Ls~N~l~~~~~~~~l~~~ 536 (662)
+ .+..+++|+.|+|++|.|+.++.+..+++|+.|+|++|.|+++. + +..+++|+.|+|++|.++.. +
T Consensus 128 ~-~l~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~L~~N~l~~~~--~--l~~l~~L~~L~L~~N~i~~l-~------- 194 (291)
T 1h6t_A 128 N-GLVHLPQLESLYLGNNKITDITVLSRLTKLDTLSLEDNQISDIV--P--LAGLTKLQNLYLSKNHISDL-R------- 194 (291)
T ss_dssp G-GGGGCTTCCEEECCSSCCCCCGGGGGCTTCSEEECCSSCCCCCG--G--GTTCTTCCEEECCSSCCCBC-G-------
T ss_pred h-hhcCCCCCCEEEccCCcCCcchhhccCCCCCEEEccCCccccch--h--hcCCCccCEEECCCCcCCCC-h-------
Confidence 5 68899999999999999999999999999999999999999984 2 68899999999999999863 1
Q ss_pred HHhhCccCceeecCCCCCCccccc
Q 035577 537 LQSLLPHLVYFNWQPMKASTLKDA 560 (662)
Q Consensus 537 l~~~l~~L~~Ld~~~~~~~~l~~~ 560 (662)
....+++|++|++..+.+...+..
T Consensus 195 ~l~~l~~L~~L~l~~n~i~~~~~~ 218 (291)
T 1h6t_A 195 ALAGLKNLDVLELFSQECLNKPIN 218 (291)
T ss_dssp GGTTCTTCSEEEEEEEEEECCCEE
T ss_pred hhccCCCCCEEECcCCcccCCccc
Confidence 146789999999998876654443
No 84
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.72 E-value=2.4e-18 Score=180.52 Aligned_cols=165 Identities=19% Similarity=0.202 Sum_probs=84.8
Q ss_pred ccEEEccCCCCCCCCC-CCCC-----CCCCEEEccCCCCcccCCCcCC--CCccEEEccCCCCCCC----cC--CCCCCC
Q 035577 377 ATTVQLSNHGLVVIPF-LSAF-----VSLKVLNLSGNAIVRITAGALP--RGLHILNLSKNNISTI----EG--LRELTR 442 (662)
Q Consensus 377 L~~L~Ls~N~L~~lp~-l~~L-----~~L~~L~Ls~N~L~~l~~~~~~--~~L~~L~Ls~N~L~~l----p~--l~~L~~ 442 (662)
|+.|+|++|.|+.+|. +..+ ++|++|+|++|.|+.+++..+. ++|++|+|++|++.+. +. +..+++
T Consensus 123 L~~L~Ls~N~l~~~~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~ 202 (312)
T 1wwl_A 123 LNILNLRNVSWATRDAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISALCPLKFPT 202 (312)
T ss_dssp CSEEEEESCBCSSSSSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCCSSCCEEECCSCTTCHHHHHHHHSCTTSCTT
T ss_pred ccEEEccCCCCcchhHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccCCCCCEEECCCCCcCcchHHHHHHHhccCCC
Confidence 5566666666555543 3333 5566666666666555544443 5566666666654431 12 255556
Q ss_pred CCEEeCcCCCCcccc---cc-ccCCCCCcEEEcCCCCCCCc---ccccCCCCCcEEECCCCccCccccchHhhhcCCCCc
Q 035577 443 LRVLDLSYNRILRIG---HG-LASCSSLKELYLAGNKISEV---EGLHRLLKLTVLDLRFNKISTAKCLGQLAANYNSLQ 515 (662)
Q Consensus 443 L~~LdLs~N~Ls~Lp---~~-l~~L~~L~~L~Ls~N~L~~l---~~l~~L~~L~~LdLs~N~Ls~l~~l~~~l~~l~~L~ 515 (662)
|++|+|++|.|+.++ .. +..+++|++|+|++|.|++. +.+..+++|+.|+|++|.|+.++ ..+. ++|+
T Consensus 203 L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~N~l~~ip---~~~~--~~L~ 277 (312)
T 1wwl_A 203 LQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLKQVP---KGLP--AKLS 277 (312)
T ss_dssp CCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCCCSCCCCCTTCCEEECTTSCCSSCC---SSCC--SEEE
T ss_pred CCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCcccchhhhhhcCCCCEEECCCCccChhh---hhcc--CCce
Confidence 666666666555332 12 33455666666666655553 23344555666666666655442 2221 4556
Q ss_pred EEEccCCCCCCCCChHHHHHHHHhhCccCceeecCCCCC
Q 035577 516 AISLEGNPAQKNVGDEQLKKNLQSLLPHLVYFNWQPMKA 554 (662)
Q Consensus 516 ~L~Ls~N~l~~~~~~~~l~~~l~~~l~~L~~Ld~~~~~~ 554 (662)
+|+|++|.+++. |. ...+++|++|++..+.+
T Consensus 278 ~L~Ls~N~l~~~-p~-------~~~l~~L~~L~L~~N~l 308 (312)
T 1wwl_A 278 VLDLSYNRLDRN-PS-------PDELPQVGNLSLKGNPF 308 (312)
T ss_dssp EEECCSSCCCSC-CC-------TTTSCEEEEEECTTCTT
T ss_pred EEECCCCCCCCC-hh-------HhhCCCCCEEeccCCCC
Confidence 666666665543 21 23455555555555544
No 85
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.72 E-value=3.7e-17 Score=159.97 Aligned_cols=146 Identities=17% Similarity=0.205 Sum_probs=127.3
Q ss_pred ccEEEccCCCCCCCCCCCCCCCCCEEEccCCCCcccCCCcCCCCccEEEccCCCCCC--CcCCCCCCCCCEEeCcCCCCc
Q 035577 377 ATTVQLSNHGLVVIPFLSAFVSLKVLNLSGNAIVRITAGALPRGLHILNLSKNNIST--IEGLRELTRLRVLDLSYNRIL 454 (662)
Q Consensus 377 L~~L~Ls~N~L~~lp~l~~L~~L~~L~Ls~N~L~~l~~~~~~~~L~~L~Ls~N~L~~--lp~l~~L~~L~~LdLs~N~Ls 454 (662)
|+.|++++|.|+.+|.+..+++|++|++++|.++.++.....++|++|+|++|.++. ++.+..+++|++|+|++|.++
T Consensus 46 L~~L~l~~n~i~~l~~l~~l~~L~~L~l~~n~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~n~i~ 125 (197)
T 4ezg_A 46 LTYITLANINVTDLTGIEYAHNIKDLTINNIHATNYNPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHD 125 (197)
T ss_dssp CCEEEEESSCCSCCTTGGGCTTCSEEEEESCCCSCCGGGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCEEECCSSBCB
T ss_pred ccEEeccCCCccChHHHhcCCCCCEEEccCCCCCcchhhhcCCCCCEEEeECCccCcccChhhcCCCCCCEEEecCCccC
Confidence 889999999999999999999999999999988877643334899999999999996 568999999999999999999
Q ss_pred c-ccccccCCCCCcEEEcCCCC-CCCcccccCCCCCcEEECCCCccCccccchHhhhcCCCCcEEEccCCCCCC
Q 035577 455 R-IGHGLASCSSLKELYLAGNK-ISEVEGLHRLLKLTVLDLRFNKISTAKCLGQLAANYNSLQAISLEGNPAQK 526 (662)
Q Consensus 455 ~-Lp~~l~~L~~L~~L~Ls~N~-L~~l~~l~~L~~L~~LdLs~N~Ls~l~~l~~~l~~l~~L~~L~Ls~N~l~~ 526 (662)
. .|..+..+++|++|+|++|. ++.++.+..+++|+.|++++|.|++++ .+..+++|+.|++++|++.+
T Consensus 126 ~~~~~~l~~l~~L~~L~L~~n~~i~~~~~l~~l~~L~~L~l~~n~i~~~~----~l~~l~~L~~L~l~~N~i~~ 195 (197)
T 4ezg_A 126 DSILTKINTLPKVNSIDLSYNGAITDIMPLKTLPELKSLNIQFDGVHDYR----GIEDFPKLNQLYAFSQTIGG 195 (197)
T ss_dssp GGGHHHHTTCSSCCEEECCSCTBCCCCGGGGGCSSCCEEECTTBCCCCCT----TGGGCSSCCEEEECBC----
T ss_pred cHhHHHHhhCCCCCEEEccCCCCccccHhhcCCCCCCEEECCCCCCcChH----HhccCCCCCEEEeeCcccCC
Confidence 5 56679999999999999998 999998999999999999999999874 45788999999999999854
No 86
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.72 E-value=2e-16 Score=155.66 Aligned_cols=151 Identities=26% Similarity=0.357 Sum_probs=132.0
Q ss_pred ccEEEccCCCCCCCCCCCCCCCCCEEEccCCCCcccCCCcCC--CCccEEEccCCCCCCCcC--CCCCCCCCEEeCcCCC
Q 035577 377 ATTVQLSNHGLVVIPFLSAFVSLKVLNLSGNAIVRITAGALP--RGLHILNLSKNNISTIEG--LRELTRLRVLDLSYNR 452 (662)
Q Consensus 377 L~~L~Ls~N~L~~lp~l~~L~~L~~L~Ls~N~L~~l~~~~~~--~~L~~L~Ls~N~L~~lp~--l~~L~~L~~LdLs~N~ 452 (662)
-+.+++++++++.+|. ...++|++|+|++|.|+.++...+. ++|++|+|++|+|+.++. |..+++|++|+|++|.
T Consensus 9 ~~~v~c~~~~l~~~p~-~~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~ 87 (208)
T 2o6s_A 9 GTTVECYSQGRTSVPT-GIPAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQ 87 (208)
T ss_dssp TTEEECCSSCCSSCCS-CCCTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred CCEEEecCCCccCCCC-CCCCCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCCc
Confidence 4588999999999985 3356899999999999998877664 899999999999998863 7899999999999999
Q ss_pred Ccccccc-ccCCCCCcEEEcCCCCCCCcc--cccCCCCCcEEECCCCccCccccchHhhhcCCCCcEEEccCCCCCCCCC
Q 035577 453 ILRIGHG-LASCSSLKELYLAGNKISEVE--GLHRLLKLTVLDLRFNKISTAKCLGQLAANYNSLQAISLEGNPAQKNVG 529 (662)
Q Consensus 453 Ls~Lp~~-l~~L~~L~~L~Ls~N~L~~l~--~l~~L~~L~~LdLs~N~Ls~l~~l~~~l~~l~~L~~L~Ls~N~l~~~~~ 529 (662)
|+.+|.. |..+++|++|+|++|.|+.++ .+..+++|+.|+|++|.|++++ +..+..+++|+.|+|++|++.+.++
T Consensus 88 l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~--~~~~~~l~~L~~L~l~~N~~~~~~~ 165 (208)
T 2o6s_A 88 LQSLPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVP--DGVFDRLTSLQYIWLHDNPWDCTCP 165 (208)
T ss_dssp CCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCC--TTTTTTCTTCCEEECCSCCBCCCTT
T ss_pred CCccCHhHhcCccCCCEEEcCCCcCcccCHhHhccCCcCCEEECCCCccceeC--HHHhccCCCccEEEecCCCeecCCC
Confidence 9988766 789999999999999999885 3788999999999999999875 5567889999999999999998776
Q ss_pred h
Q 035577 530 D 530 (662)
Q Consensus 530 ~ 530 (662)
.
T Consensus 166 ~ 166 (208)
T 2o6s_A 166 G 166 (208)
T ss_dssp T
T ss_pred C
Confidence 4
No 87
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.72 E-value=1.2e-17 Score=167.94 Aligned_cols=178 Identities=17% Similarity=0.232 Sum_probs=152.1
Q ss_pred ccCCccEEEccCCCCCCCCC--CCCCCCCCEEEccCCC-CcccCCCcCC--CCccEEEccC-CCCCCCc--CCCCCCCCC
Q 035577 373 LSASATTVQLSNHGLVVIPF--LSAFVSLKVLNLSGNA-IVRITAGALP--RGLHILNLSK-NNISTIE--GLRELTRLR 444 (662)
Q Consensus 373 l~~sL~~L~Ls~N~L~~lp~--l~~L~~L~~L~Ls~N~-L~~l~~~~~~--~~L~~L~Ls~-N~L~~lp--~l~~L~~L~ 444 (662)
++..++.|+|++|.|+.+|. |..+++|++|+|++|. ++.++...|. ++|++|+|++ |.|+.++ .|..+++|+
T Consensus 29 ~~~~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~ 108 (239)
T 2xwt_C 29 LPPSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLK 108 (239)
T ss_dssp CCTTCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCC
T ss_pred CCCcccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCC
Confidence 34469999999999998875 8999999999999997 9999987765 8999999999 9999886 578999999
Q ss_pred EEeCcCCCCccccccccCCCCCc---EEEcCCC-CCCCcc--cccCCCCCc-EEECCCCccCccccchHhhhcCCCCcEE
Q 035577 445 VLDLSYNRILRIGHGLASCSSLK---ELYLAGN-KISEVE--GLHRLLKLT-VLDLRFNKISTAKCLGQLAANYNSLQAI 517 (662)
Q Consensus 445 ~LdLs~N~Ls~Lp~~l~~L~~L~---~L~Ls~N-~L~~l~--~l~~L~~L~-~LdLs~N~Ls~l~~l~~~l~~l~~L~~L 517 (662)
+|++++|.++.+|. |..+++|+ +|++++| .|+.++ .+..+++|+ .|++++|.|+.++ +..+.. ++|+.|
T Consensus 109 ~L~l~~n~l~~lp~-~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l~~i~--~~~~~~-~~L~~L 184 (239)
T 2xwt_C 109 FLGIFNTGLKMFPD-LTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFTSVQ--GYAFNG-TKLDAV 184 (239)
T ss_dssp EEEEEEECCCSCCC-CTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCCCCEEC--TTTTTT-CEEEEE
T ss_pred EEeCCCCCCccccc-cccccccccccEEECCCCcchhhcCcccccchhcceeEEEcCCCCCcccC--HhhcCC-CCCCEE
Confidence 99999999999996 88888888 9999999 999885 488999999 9999999999875 344444 799999
Q ss_pred EccCCC-CCCCCChHHHHHHHHhhC-ccCceeecCCCCCCccccc
Q 035577 518 SLEGNP-AQKNVGDEQLKKNLQSLL-PHLVYFNWQPMKASTLKDA 560 (662)
Q Consensus 518 ~Ls~N~-l~~~~~~~~l~~~l~~~l-~~L~~Ld~~~~~~~~l~~~ 560 (662)
+|++|+ +... +.. ....+ ++|+.|++..+.+..++..
T Consensus 185 ~L~~n~~l~~i-~~~-----~~~~l~~~L~~L~l~~N~l~~l~~~ 223 (239)
T 2xwt_C 185 YLNKNKYLTVI-DKD-----AFGGVYSGPSLLDVSQTSVTALPSK 223 (239)
T ss_dssp ECTTCTTCCEE-CTT-----TTTTCSBCCSEEECTTCCCCCCCCT
T ss_pred EcCCCCCcccC-CHH-----HhhccccCCcEEECCCCccccCChh
Confidence 999996 8743 221 23456 8999999999988776654
No 88
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.72 E-value=2.2e-17 Score=176.94 Aligned_cols=164 Identities=26% Similarity=0.319 Sum_probs=140.0
Q ss_pred cCCccEEEccCCCCCCCCC--CC-CCCCCCEEEccCCCCcccCCCcCC--CCccEEEccCCCCCCCc--CCCCCCCCCEE
Q 035577 374 SASATTVQLSNHGLVVIPF--LS-AFVSLKVLNLSGNAIVRITAGALP--RGLHILNLSKNNISTIE--GLRELTRLRVL 446 (662)
Q Consensus 374 ~~sL~~L~Ls~N~L~~lp~--l~-~L~~L~~L~Ls~N~L~~l~~~~~~--~~L~~L~Ls~N~L~~lp--~l~~L~~L~~L 446 (662)
+..++.|+|++|.|+.++. +. .+++|++|+|++|.|+.++...|. ++|++|+|++|+|+.++ .|..+++|++|
T Consensus 38 ~~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L 117 (361)
T 2xot_A 38 PSYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSNHLHTLDEFLFSDLQALEVL 117 (361)
T ss_dssp CTTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEE
T ss_pred CCCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCCCcCCcCCHHHhCCCcCCCEE
Confidence 3448899999999998875 66 999999999999999999987776 89999999999999886 48999999999
Q ss_pred eCcCCCCcccc-ccccCCCCCcEEEcCCCCCCCccc--c---cCCCCCcEEECCCCccCccccchHhhhcCCC--CcEEE
Q 035577 447 DLSYNRILRIG-HGLASCSSLKELYLAGNKISEVEG--L---HRLLKLTVLDLRFNKISTAKCLGQLAANYNS--LQAIS 518 (662)
Q Consensus 447 dLs~N~Ls~Lp-~~l~~L~~L~~L~Ls~N~L~~l~~--l---~~L~~L~~LdLs~N~Ls~l~~l~~~l~~l~~--L~~L~ 518 (662)
+|++|.|+.++ ..|..+++|+.|+|++|+|+.++. + ..+++|+.|+|++|+|+.++ ...+..++. |+.|+
T Consensus 118 ~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~--~~~~~~l~~~~l~~l~ 195 (361)
T 2xot_A 118 LLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNKLKKLP--LTDLQKLPAWVKNGLY 195 (361)
T ss_dssp ECCSSCCCEECTTTTTTCTTCCEEECCSSCCCSCCGGGTC----CTTCCEEECCSSCCCCCC--HHHHHHSCHHHHTTEE
T ss_pred ECCCCcccEECHHHhCCcccCCEEECCCCcCCeeCHHHhcCcccCCcCCEEECCCCCCCccC--HHHhhhccHhhcceEE
Confidence 99999999884 459999999999999999999862 3 57899999999999999986 556677776 48899
Q ss_pred ccCCCCCCCCChHHH-HHHHHh
Q 035577 519 LEGNPAQKNVGDEQL-KKNLQS 539 (662)
Q Consensus 519 Ls~N~l~~~~~~~~l-~~~l~~ 539 (662)
|.+|+|.|+|...++ ..|...
T Consensus 196 l~~N~~~C~C~l~~~~~~~~~~ 217 (361)
T 2xot_A 196 LHNNPLECDCKLYQLFSHWQYR 217 (361)
T ss_dssp CCSSCEECCHHHHHHHHHHHHT
T ss_pred ecCCCccCCcCcHHHHHHHHHh
Confidence 999999999876654 345443
No 89
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.71 E-value=2.8e-18 Score=184.77 Aligned_cols=262 Identities=18% Similarity=0.202 Sum_probs=179.6
Q ss_pred CCCCCccCCC-CCCCCCCceeecCCccCCCcc--hhhhcCCCCCCCCcccCCCCCCCCccC-Cc----------ccCCCC
Q 035577 285 DENSVKKLQG-ESLHEQWDKLPSKHFKIKRIK--EWVNDLQHCSPLEESDETSVSNDQVKR-DP----------KVLNGS 350 (662)
Q Consensus 285 s~N~I~~L~~-~s~l~~L~~L~l~~~si~~L~--~~~~~L~~l~~L~~L~~l~ls~n~L~~-~p----------~~l~~L 350 (662)
....+..+.. +..+++|+.|++.+|.+.... .+...+..++.|+.|+......+.+.. +| ..+.+|
T Consensus 17 ~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L 96 (386)
T 2ca6_A 17 TTEDEKSVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKL 96 (386)
T ss_dssp CSHHHHTTSHHHHHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTC
T ss_pred CHHHHHHHHHHHhcCCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcc
Confidence 3444444433 455678999999999887642 233456777777776655544444432 12 235788
Q ss_pred CceeeCCccccc--hhhhHHHhhhccCCccEEEccCCCCCCCC-----C-CCCC---------CCCCEEEccCCCCcccC
Q 035577 351 TAVKVDGKVTAG--MEAVTKYISSLSASATTVQLSNHGLVVIP-----F-LSAF---------VSLKVLNLSGNAIVRIT 413 (662)
Q Consensus 351 ~~L~l~~~~~~~--l~~l~~~l~~l~~sL~~L~Ls~N~L~~lp-----~-l~~L---------~~L~~L~Ls~N~L~~l~ 413 (662)
+.|+++++.+.. +..++..+..++. |+.|+|++|.|+... . +..+ ++|++|+|++|.|+...
T Consensus 97 ~~L~Ls~n~l~~~~~~~l~~~l~~~~~-L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~ 175 (386)
T 2ca6_A 97 HTVRLSDNAFGPTAQEPLIDFLSKHTP-LEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGS 175 (386)
T ss_dssp CEEECCSCCCCTTTHHHHHHHHHHCTT-CCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGG
T ss_pred cEEECCCCcCCHHHHHHHHHHHHhCCC-CCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHH
Confidence 888888866543 3345666666665 899999999886322 1 3333 88999999999886322
Q ss_pred CC----cC--CCCccEEEccCCCCCC------Cc-CCCCCCCCCEEeCcCCCC-----ccccccccCCCCCcEEEcCCCC
Q 035577 414 AG----AL--PRGLHILNLSKNNIST------IE-GLRELTRLRVLDLSYNRI-----LRIGHGLASCSSLKELYLAGNK 475 (662)
Q Consensus 414 ~~----~~--~~~L~~L~Ls~N~L~~------lp-~l~~L~~L~~LdLs~N~L-----s~Lp~~l~~L~~L~~L~Ls~N~ 475 (662)
.. .+ .++|++|+|++|.|+. ++ .+..+++|++|+|++|.| ..+|..+..+++|+.|+|++|.
T Consensus 176 ~~~l~~~l~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~L~~n~ 255 (386)
T 2ca6_A 176 MKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCL 255 (386)
T ss_dssp HHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCC
T ss_pred HHHHHHHHHhCCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHHHccCCCcCEEECCCCC
Confidence 11 11 1689999999999882 34 678889999999999998 4677778889999999999999
Q ss_pred CCCc------ccc--cCCCCCcEEECCCCccCc--cccchHhh-hcCCCCcEEEccCCCCCCCCChHHHHHHHHhhCccC
Q 035577 476 ISEV------EGL--HRLLKLTVLDLRFNKIST--AKCLGQLA-ANYNSLQAISLEGNPAQKNVGDEQLKKNLQSLLPHL 544 (662)
Q Consensus 476 L~~l------~~l--~~L~~L~~LdLs~N~Ls~--l~~l~~~l-~~l~~L~~L~Ls~N~l~~~~~~~~l~~~l~~~l~~L 544 (662)
|+.. ..+ ..+++|+.|+|++|.|+. +..++..+ .++++|+.|+|++|++++..+ +...+...++.+
T Consensus 256 i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l~~N~l~~~~~---~~~~l~~~l~~~ 332 (386)
T 2ca6_A 256 LSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSEEDD---VVDEIREVFSTR 332 (386)
T ss_dssp CCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSCTTSH---HHHHHHHHHHHH
T ss_pred CchhhHHHHHHHHhhccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceEEEccCCcCCcchh---HHHHHHHHhhhc
Confidence 8865 234 348889999999999987 11235555 668999999999999987543 334455555565
Q ss_pred ceeecC
Q 035577 545 VYFNWQ 550 (662)
Q Consensus 545 ~~Ld~~ 550 (662)
+.+++.
T Consensus 333 ~~~~l~ 338 (386)
T 2ca6_A 333 GRGELD 338 (386)
T ss_dssp TCCEEC
T ss_pred Ccchhh
Confidence 544443
No 90
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.70 E-value=6e-18 Score=182.19 Aligned_cols=241 Identities=18% Similarity=0.197 Sum_probs=177.3
Q ss_pred CcchhhhcCCCCCCCCcccCCCCCCCCccC--------CcccCCCCCceeeCCcccc--------chhhhHHHhhhccCC
Q 035577 313 RIKEWVNDLQHCSPLEESDETSVSNDQVKR--------DPKVLNGSTAVKVDGKVTA--------GMEAVTKYISSLSAS 376 (662)
Q Consensus 313 ~L~~~~~~L~~l~~L~~L~~l~ls~n~L~~--------~p~~l~~L~~L~l~~~~~~--------~l~~l~~~l~~l~~s 376 (662)
.+..+...+..++.|+.|+ ++.+.+.. ....+.+|+.|++.++... .+..+...+..++.
T Consensus 20 ~~~~l~~~l~~~~~L~~L~---L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~- 95 (386)
T 2ca6_A 20 DEKSVFAVLLEDDSVKEIV---LSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPK- 95 (386)
T ss_dssp HHHTTSHHHHHCSCCCEEE---CTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTT-
T ss_pred HHHHHHHHHhcCCCccEEE---CCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCc-
Confidence 3443334455555555544 44444432 2234788999999886544 33344444566654
Q ss_pred ccEEEccCCCCCC-----CCC-CCCCCCCCEEEccCCCCcccCCCcCC---------------CCccEEEccCCCCCC--
Q 035577 377 ATTVQLSNHGLVV-----IPF-LSAFVSLKVLNLSGNAIVRITAGALP---------------RGLHILNLSKNNIST-- 433 (662)
Q Consensus 377 L~~L~Ls~N~L~~-----lp~-l~~L~~L~~L~Ls~N~L~~l~~~~~~---------------~~L~~L~Ls~N~L~~-- 433 (662)
|++|+|++|.|+. +|. +..+++|++|+|++|.|+......++ ++|++|+|++|+|+.
T Consensus 96 L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~ 175 (386)
T 2ca6_A 96 LHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGS 175 (386)
T ss_dssp CCEEECCSCCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGG
T ss_pred ccEEECCCCcCCHHHHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHH
Confidence 9999999999986 453 78899999999999999754433332 599999999999983
Q ss_pred Cc----CCCCCCCCCEEeCcCCCCc------cccccccCCCCCcEEEcCCCCCC-----Ccc-cccCCCCCcEEECCCCc
Q 035577 434 IE----GLRELTRLRVLDLSYNRIL------RIGHGLASCSSLKELYLAGNKIS-----EVE-GLHRLLKLTVLDLRFNK 497 (662)
Q Consensus 434 lp----~l~~L~~L~~LdLs~N~Ls------~Lp~~l~~L~~L~~L~Ls~N~L~-----~l~-~l~~L~~L~~LdLs~N~ 497 (662)
++ .+..+++|++|+|++|.|+ -+|..+..+++|+.|+|++|.|+ .++ .+..+++|+.|+|++|.
T Consensus 176 ~~~l~~~l~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~L~~n~ 255 (386)
T 2ca6_A 176 MKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCL 255 (386)
T ss_dssp HHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCC
T ss_pred HHHHHHHHHhCCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHHHccCCCcCEEECCCCC
Confidence 34 4667889999999999998 24447889999999999999995 333 67889999999999999
Q ss_pred cCcc--ccchHhhhc--CCCCcEEEccCCCCCCCCChHHHHHHHHhhCccCceeecCCCCCCccc
Q 035577 498 ISTA--KCLGQLAAN--YNSLQAISLEGNPAQKNVGDEQLKKNLQSLLPHLVYFNWQPMKASTLK 558 (662)
Q Consensus 498 Ls~l--~~l~~~l~~--l~~L~~L~Ls~N~l~~~~~~~~l~~~l~~~l~~L~~Ld~~~~~~~~l~ 558 (662)
|+.. ..++..+.. +++|+.|+|++|.++.. ....+...+...+++|++|++..+.+....
T Consensus 256 i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~i~~~-g~~~l~~~l~~~l~~L~~L~l~~N~l~~~~ 319 (386)
T 2ca6_A 256 LSARGAAAVVDAFSKLENIGLQTLRLQYNEIELD-AVRTLKTVIDEKMPDLLFLELNGNRFSEED 319 (386)
T ss_dssp CCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHH-HHHHHHHHHHHHCTTCCEEECTTSBSCTTS
T ss_pred CchhhHHHHHHHHhhccCCCeEEEECcCCcCCHH-HHHHHHHHHHhcCCCceEEEccCCcCCcch
Confidence 9975 234556544 89999999999998752 122355566677899999999999887554
No 91
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.70 E-value=7.1e-17 Score=165.77 Aligned_cols=169 Identities=22% Similarity=0.251 Sum_probs=138.5
Q ss_pred CCCCceeeCCccccchhhhHHHhhhccCCccEEEccCCCCCCCCCCCCCCCCCEEEccCCCCcccCCCcCCCCccEEEcc
Q 035577 348 NGSTAVKVDGKVTAGMEAVTKYISSLSASATTVQLSNHGLVVIPFLSAFVSLKVLNLSGNAIVRITAGALPRGLHILNLS 427 (662)
Q Consensus 348 ~~L~~L~l~~~~~~~l~~l~~~l~~l~~sL~~L~Ls~N~L~~lp~l~~L~~L~~L~Ls~N~L~~l~~~~~~~~L~~L~Ls 427 (662)
..+..+.+.++....+. .+..++. |+.|++++|.|+.++.+..+++|++|+|++|.|+.++.....++|++|+|+
T Consensus 19 ~~l~~l~l~~~~i~~~~----~~~~l~~-L~~L~l~~n~i~~l~~l~~l~~L~~L~L~~N~i~~~~~l~~l~~L~~L~L~ 93 (263)
T 1xeu_A 19 ANAVKQNLGKQSVTDLV----SQKELSG-VQNFNGDNSNIQSLAGMQFFTNLKELHLSHNQISDLSPLKDLTKLEELSVN 93 (263)
T ss_dssp HHHHHHHHTCSCTTSEE----CHHHHTT-CSEEECTTSCCCCCTTGGGCTTCCEEECCSSCCCCCGGGTTCSSCCEEECC
T ss_pred HHHHHHHhcCCCccccc----chhhcCc-CcEEECcCCCcccchHHhhCCCCCEEECCCCccCCChhhccCCCCCEEECC
Confidence 33444445444333332 1233443 889999999999999889999999999999999988862222899999999
Q ss_pred CCCCCCCcCCCCCCCCCEEeCcCCCCccccccccCCCCCcEEEcCCCCCCCcccccCCCCCcEEECCCCccCccccchHh
Q 035577 428 KNNISTIEGLRELTRLRVLDLSYNRILRIGHGLASCSSLKELYLAGNKISEVEGLHRLLKLTVLDLRFNKISTAKCLGQL 507 (662)
Q Consensus 428 ~N~L~~lp~l~~L~~L~~LdLs~N~Ls~Lp~~l~~L~~L~~L~Ls~N~L~~l~~l~~L~~L~~LdLs~N~Ls~l~~l~~~ 507 (662)
+|+|+.++.+.. ++|++|+|++|.|+.++ .+..+++|+.|+|++|+|++++.+..+++|+.|+|++|.|+++ ..
T Consensus 94 ~N~l~~l~~~~~-~~L~~L~L~~N~l~~~~-~l~~l~~L~~L~Ls~N~i~~~~~l~~l~~L~~L~L~~N~i~~~----~~ 167 (263)
T 1xeu_A 94 RNRLKNLNGIPS-ACLSRLFLDNNELRDTD-SLIHLKNLEILSIRNNKLKSIVMLGFLSKLEVLDLHGNEITNT----GG 167 (263)
T ss_dssp SSCCSCCTTCCC-SSCCEEECCSSCCSBSG-GGTTCTTCCEEECTTSCCCBCGGGGGCTTCCEEECTTSCCCBC----TT
T ss_pred CCccCCcCcccc-CcccEEEccCCccCCCh-hhcCcccccEEECCCCcCCCChHHccCCCCCEEECCCCcCcch----HH
Confidence 999999987766 99999999999999886 5889999999999999999998899999999999999999987 23
Q ss_pred hhcCCCCcEEEccCCCCCCC
Q 035577 508 AANYNSLQAISLEGNPAQKN 527 (662)
Q Consensus 508 l~~l~~L~~L~Ls~N~l~~~ 527 (662)
+..+++|+.|+|++|++.+.
T Consensus 168 l~~l~~L~~L~l~~N~~~~~ 187 (263)
T 1xeu_A 168 LTRLKKVNWIDLTGQKCVNE 187 (263)
T ss_dssp STTCCCCCEEEEEEEEEECC
T ss_pred hccCCCCCEEeCCCCcccCC
Confidence 57889999999999999875
No 92
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.70 E-value=1.8e-16 Score=180.51 Aligned_cols=140 Identities=24% Similarity=0.330 Sum_probs=112.5
Q ss_pred CCccEEEccCCCCCCCCCCCCCCCCCEEEccCCCCcccCCCcCCCCccEEEccCCCCCCCcCCCCCCCCCEEeCcCCCCc
Q 035577 375 ASATTVQLSNHGLVVIPFLSAFVSLKVLNLSGNAIVRITAGALPRGLHILNLSKNNISTIEGLRELTRLRVLDLSYNRIL 454 (662)
Q Consensus 375 ~sL~~L~Ls~N~L~~lp~l~~L~~L~~L~Ls~N~L~~l~~~~~~~~L~~L~Ls~N~L~~lp~l~~L~~L~~LdLs~N~Ls 454 (662)
..|+.|+|++|.|+.+|.+.. +|++|+|++|.|+.++. ..++|++|+|++|.|+.+|. .+++|++|+|++|.|+
T Consensus 100 ~~L~~L~Ls~N~l~~ip~l~~--~L~~L~Ls~N~l~~lp~--~l~~L~~L~Ls~N~l~~lp~--~l~~L~~L~Ls~N~L~ 173 (571)
T 3cvr_A 100 ASLEYLDACDNRLSTLPELPA--SLKHLDVDNNQLTMLPE--LPALLEYINADNNQLTMLPE--LPTSLEVLSVRNNQLT 173 (571)
T ss_dssp TTCCEEECCSSCCSCCCCCCT--TCCEEECCSSCCSCCCC--CCTTCCEEECCSSCCSCCCC--CCTTCCEEECCSSCCS
T ss_pred CCCCEEEccCCCCCCcchhhc--CCCEEECCCCcCCCCCC--cCccccEEeCCCCccCcCCC--cCCCcCEEECCCCCCC
Confidence 348889999998888887443 88999999999888876 55789999999999988876 5788999999999998
Q ss_pred cccccccCCCCCcEEEcCCCCCCCcccccCCCCC-------cEEECCCCccCccccchHhhhcCCCCcEEEccCCCCCCC
Q 035577 455 RIGHGLASCSSLKELYLAGNKISEVEGLHRLLKL-------TVLDLRFNKISTAKCLGQLAANYNSLQAISLEGNPAQKN 527 (662)
Q Consensus 455 ~Lp~~l~~L~~L~~L~Ls~N~L~~l~~l~~L~~L-------~~LdLs~N~Ls~l~~l~~~l~~l~~L~~L~Ls~N~l~~~ 527 (662)
.+|. |. ++|+.|+|++|.|+.+|.+.. +| +.|+|++|.|+.+ |..+..+++|+.|+|++|++++.
T Consensus 174 ~lp~-l~--~~L~~L~Ls~N~L~~lp~~~~--~L~~~~~~L~~L~Ls~N~l~~l---p~~l~~l~~L~~L~L~~N~l~~~ 245 (571)
T 3cvr_A 174 FLPE-LP--ESLEALDVSTNLLESLPAVPV--RNHHSEETEIFFRCRENRITHI---PENILSLDPTCTIILEDNPLSSR 245 (571)
T ss_dssp CCCC-CC--TTCCEEECCSSCCSSCCCCC----------CCEEEECCSSCCCCC---CGGGGGSCTTEEEECCSSSCCHH
T ss_pred Ccch-hh--CCCCEEECcCCCCCchhhHHH--hhhcccccceEEecCCCcceec---CHHHhcCCCCCEEEeeCCcCCCc
Confidence 8887 65 889999999999988876433 67 8999999999877 44455688999999999998874
Q ss_pred C
Q 035577 528 V 528 (662)
Q Consensus 528 ~ 528 (662)
+
T Consensus 246 ~ 246 (571)
T 3cvr_A 246 I 246 (571)
T ss_dssp H
T ss_pred C
Confidence 3
No 93
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.70 E-value=1.1e-16 Score=183.63 Aligned_cols=171 Identities=29% Similarity=0.315 Sum_probs=139.7
Q ss_pred CCCCCceeeCCccccchhhhHHHhhhccCCccEEEccCCCCCCCCCCCCCCCCCEEEccCCCCcccCCCcCCCCccEEEc
Q 035577 347 LNGSTAVKVDGKVTAGMEAVTKYISSLSASATTVQLSNHGLVVIPFLSAFVSLKVLNLSGNAIVRITAGALPRGLHILNL 426 (662)
Q Consensus 347 l~~L~~L~l~~~~~~~l~~l~~~l~~l~~sL~~L~Ls~N~L~~lp~l~~L~~L~~L~Ls~N~L~~l~~~~~~~~L~~L~L 426 (662)
+..|+.|.+.++.+..+.. +..++. |+.|+|++|.|+.++.+..+++|+.|+|++|.|..++...-.++|+.|+|
T Consensus 42 L~~L~~L~l~~n~i~~l~~----l~~l~~-L~~L~Ls~N~l~~~~~l~~l~~L~~L~Ls~N~l~~l~~l~~l~~L~~L~L 116 (605)
T 1m9s_A 42 LNSIDQIIANNSDIKSVQG----IQYLPN-VTKLFLNGNKLTDIKPLTNLKNLGWLFLDENKIKDLSSLKDLKKLKSLSL 116 (605)
T ss_dssp HTTCCCCBCTTCCCCCCTT----GGGCTT-CCEEECTTSCCCCCGGGGGCTTCCEEECCSSCCCCCTTSTTCTTCCEEEC
T ss_pred CCCCCEEECcCCCCCCChH----HccCCC-CCEEEeeCCCCCCChhhccCCCCCEEECcCCCCCCChhhccCCCCCEEEe
Confidence 6778888888766655542 444554 88999999999888778888999999999999888764333378999999
Q ss_pred cCCCCCCCcCCCCCCCCCEEeCcCCCCccccccccCCCCCcEEEcCCCCCCCcccccCCCCCcEEECCCCccCccccchH
Q 035577 427 SKNNISTIEGLRELTRLRVLDLSYNRILRIGHGLASCSSLKELYLAGNKISEVEGLHRLLKLTVLDLRFNKISTAKCLGQ 506 (662)
Q Consensus 427 s~N~L~~lp~l~~L~~L~~LdLs~N~Ls~Lp~~l~~L~~L~~L~Ls~N~L~~l~~l~~L~~L~~LdLs~N~Ls~l~~l~~ 506 (662)
++|.|+.++.+..+++|+.|+|++|.|+.+ ..+..+++|+.|+|++|.|++++.+..+++|+.|+|++|.|++++
T Consensus 117 s~N~l~~l~~l~~l~~L~~L~Ls~N~l~~l-~~l~~l~~L~~L~Ls~N~l~~~~~l~~l~~L~~L~Ls~N~i~~l~---- 191 (605)
T 1m9s_A 117 EHNGISDINGLVHLPQLESLYLGNNKITDI-TVLSRLTKLDTLSLEDNQISDIVPLAGLTKLQNLYLSKNHISDLR---- 191 (605)
T ss_dssp TTSCCCCCGGGGGCTTCSEEECCSSCCCCC-GGGGSCTTCSEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCBCG----
T ss_pred cCCCCCCCccccCCCccCEEECCCCccCCc-hhhcccCCCCEEECcCCcCCCchhhccCCCCCEEECcCCCCCCCh----
Confidence 999999888888889999999999998888 468888999999999999988866888899999999999888863
Q ss_pred hhhcCCCCcEEEccCCCCCCC
Q 035577 507 LAANYNSLQAISLEGNPAQKN 527 (662)
Q Consensus 507 ~l~~l~~L~~L~Ls~N~l~~~ 527 (662)
.+..+++|+.|+|++|++.+.
T Consensus 192 ~l~~l~~L~~L~L~~N~l~~~ 212 (605)
T 1m9s_A 192 ALAGLKNLDVLELFSQECLNK 212 (605)
T ss_dssp GGTTCTTCSEEECCSEEEECC
T ss_pred HHccCCCCCEEEccCCcCcCC
Confidence 257788999999999988763
No 94
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.69 E-value=3.1e-17 Score=171.63 Aligned_cols=174 Identities=21% Similarity=0.207 Sum_probs=126.5
Q ss_pred CCCCCceeeCCccccchhh-hH-HHhhhccCCccEEEccCCCCCCCCC--CCCCCCCCEEEccCCCCcc---cCCCcC--
Q 035577 347 LNGSTAVKVDGKVTAGMEA-VT-KYISSLSASATTVQLSNHGLVVIPF--LSAFVSLKVLNLSGNAIVR---ITAGAL-- 417 (662)
Q Consensus 347 l~~L~~L~l~~~~~~~l~~-l~-~~l~~l~~sL~~L~Ls~N~L~~lp~--l~~L~~L~~L~Ls~N~L~~---l~~~~~-- 417 (662)
+.+|+.|++.++.+..... +. ..+..++ .|++|+|++|.|+.++. |..+++|++|+|++|.+.. ++...+
T Consensus 116 ~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~-~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~ 194 (310)
T 4glp_A 116 GLALSSLRLRNVSWATGRSWLAELQQWLKP-GLKVLSIAQAHSPAFSCEQVRAFPALTSLDLSDNPGLGERGLMAALCPH 194 (310)
T ss_dssp CBCCSSCEEESCCCSSTTSSHHHHHTTBCS-CCCEEEEECCSSCCCCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTT
T ss_pred CCCCCEEEeecccccchhhhhHHHHhhhcc-CCCEEEeeCCCcchhhHHHhccCCCCCEEECCCCCCccchhhhHHHhhh
Confidence 4566777777655443211 11 1223333 48899999999987763 8888999999999998754 332222
Q ss_pred -CCCccEEEccCCCCCCCcC-----CCCCCCCCEEeCcCCCCccc-cccccCC---CCCcEEEcCCCCCCCcccccCCCC
Q 035577 418 -PRGLHILNLSKNNISTIEG-----LRELTRLRVLDLSYNRILRI-GHGLASC---SSLKELYLAGNKISEVEGLHRLLK 487 (662)
Q Consensus 418 -~~~L~~L~Ls~N~L~~lp~-----l~~L~~L~~LdLs~N~Ls~L-p~~l~~L---~~L~~L~Ls~N~L~~l~~l~~L~~ 487 (662)
.++|++|+|++|+|+.++. +..+++|++|+|++|.|+.+ |..+..+ ++|++|+|++|+|+.+|... .++
T Consensus 195 ~l~~L~~L~Ls~N~l~~l~~~~~~l~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~L~~L~Ls~N~l~~lp~~~-~~~ 273 (310)
T 4glp_A 195 KFPAIQNLALRNTGMETPTGVCAALAAAGVQPHSLDLSHNSLRATVNPSAPRCMWSSALNSLNLSFAGLEQVPKGL-PAK 273 (310)
T ss_dssp SSCCCCSCBCCSSCCCCHHHHHHHHHHHTCCCSSEECTTSCCCCCCCSCCSSCCCCTTCCCEECCSSCCCSCCSCC-CSC
T ss_pred cCCCCCEEECCCCCCCchHHHHHHHHhcCCCCCEEECCCCCCCccchhhHHhccCcCcCCEEECCCCCCCchhhhh-cCC
Confidence 1688999999999987653 46778899999999998866 7666666 68999999999998886322 278
Q ss_pred CcEEECCCCccCccccchHhhhcCCCCcEEEccCCCCCC
Q 035577 488 LTVLDLRFNKISTAKCLGQLAANYNSLQAISLEGNPAQK 526 (662)
Q Consensus 488 L~~LdLs~N~Ls~l~~l~~~l~~l~~L~~L~Ls~N~l~~ 526 (662)
|+.|+|++|+|++++. +..+++|+.|+|++|+|+.
T Consensus 274 L~~L~Ls~N~l~~~~~----~~~l~~L~~L~L~~N~l~~ 308 (310)
T 4glp_A 274 LRVLDLSSNRLNRAPQ----PDELPEVDNLTLDGNPFLV 308 (310)
T ss_dssp CSCEECCSCCCCSCCC----TTSCCCCSCEECSSTTTSC
T ss_pred CCEEECCCCcCCCCch----hhhCCCccEEECcCCCCCC
Confidence 9999999999988742 3677889999999998864
No 95
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.68 E-value=3.7e-17 Score=167.84 Aligned_cols=169 Identities=21% Similarity=0.305 Sum_probs=148.2
Q ss_pred ccEEEccCCCCCCCCCCCCCCCCCEEEccCCCCcccCCCcCCCCccEEEccCCCCCCCcCCCCCCCCCEEeCcCCCCccc
Q 035577 377 ATTVQLSNHGLVVIPFLSAFVSLKVLNLSGNAIVRITAGALPRGLHILNLSKNNISTIEGLRELTRLRVLDLSYNRILRI 456 (662)
Q Consensus 377 L~~L~Ls~N~L~~lp~l~~L~~L~~L~Ls~N~L~~l~~~~~~~~L~~L~Ls~N~L~~lp~l~~L~~L~~LdLs~N~Ls~L 456 (662)
+..+++++|.++.++.+..+++|++|++++|.|+.++.....++|++|+|++|+|+.++.+..+++|++|+|++|.|+.+
T Consensus 21 l~~l~l~~~~i~~~~~~~~l~~L~~L~l~~n~i~~l~~l~~l~~L~~L~L~~N~i~~~~~l~~l~~L~~L~L~~N~l~~l 100 (263)
T 1xeu_A 21 AVKQNLGKQSVTDLVSQKELSGVQNFNGDNSNIQSLAGMQFFTNLKELHLSHNQISDLSPLKDLTKLEELSVNRNRLKNL 100 (263)
T ss_dssp HHHHHHTCSCTTSEECHHHHTTCSEEECTTSCCCCCTTGGGCTTCCEEECCSSCCCCCGGGTTCSSCCEEECCSSCCSCC
T ss_pred HHHHHhcCCCcccccchhhcCcCcEEECcCCCcccchHHhhCCCCCEEECCCCccCCChhhccCCCCCEEECCCCccCCc
Confidence 56788999999999888899999999999999999884333489999999999999998899999999999999999998
Q ss_pred cccccCCCCCcEEEcCCCCCCCcccccCCCCCcEEECCCCccCccccchHhhhcCCCCcEEEccCCCCCCCCChHHHHHH
Q 035577 457 GHGLASCSSLKELYLAGNKISEVEGLHRLLKLTVLDLRFNKISTAKCLGQLAANYNSLQAISLEGNPAQKNVGDEQLKKN 536 (662)
Q Consensus 457 p~~l~~L~~L~~L~Ls~N~L~~l~~l~~L~~L~~LdLs~N~Ls~l~~l~~~l~~l~~L~~L~Ls~N~l~~~~~~~~l~~~ 536 (662)
|... . ++|+.|+|++|+|++++.+..+++|+.|+|++|+|++++ .+..+++|+.|+|++|.+.+. .
T Consensus 101 ~~~~-~-~~L~~L~L~~N~l~~~~~l~~l~~L~~L~Ls~N~i~~~~----~l~~l~~L~~L~L~~N~i~~~--------~ 166 (263)
T 1xeu_A 101 NGIP-S-ACLSRLFLDNNELRDTDSLIHLKNLEILSIRNNKLKSIV----MLGFLSKLEVLDLHGNEITNT--------G 166 (263)
T ss_dssp TTCC-C-SSCCEEECCSSCCSBSGGGTTCTTCCEEECTTSCCCBCG----GGGGCTTCCEEECTTSCCCBC--------T
T ss_pred Cccc-c-CcccEEEccCCccCCChhhcCcccccEEECCCCcCCCCh----HHccCCCCCEEECCCCcCcch--------H
Confidence 8543 3 999999999999999999999999999999999999874 357899999999999999875 1
Q ss_pred HHhhCccCceeecCCCCCCcccc
Q 035577 537 LQSLLPHLVYFNWQPMKASTLKD 559 (662)
Q Consensus 537 l~~~l~~L~~Ld~~~~~~~~l~~ 559 (662)
....+++|++|++..+.+...+.
T Consensus 167 ~l~~l~~L~~L~l~~N~~~~~~~ 189 (263)
T 1xeu_A 167 GLTRLKKVNWIDLTGQKCVNEPV 189 (263)
T ss_dssp TSTTCCCCCEEEEEEEEEECCCE
T ss_pred HhccCCCCCEEeCCCCcccCCcc
Confidence 24568999999999887665543
No 96
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.68 E-value=1.6e-16 Score=182.27 Aligned_cols=161 Identities=28% Similarity=0.340 Sum_probs=125.1
Q ss_pred CCCCCccCCc--ccCCCCCceeeCCccccchhhhHHHhhhccCCccEEEccCCCCCCCCCCCCCCCCCEEEccCCCCccc
Q 035577 335 VSNDQVKRDP--KVLNGSTAVKVDGKVTAGMEAVTKYISSLSASATTVQLSNHGLVVIPFLSAFVSLKVLNLSGNAIVRI 412 (662)
Q Consensus 335 ls~n~L~~~p--~~l~~L~~L~l~~~~~~~l~~l~~~l~~l~~sL~~L~Ls~N~L~~lp~l~~L~~L~~L~Ls~N~L~~l 412 (662)
+..+.+..++ ..+.+|+.|++.++.+..+.. +..++. |+.|+|++|.|..+|.+..+++|+.|+|++|.|..+
T Consensus 50 l~~n~i~~l~~l~~l~~L~~L~Ls~N~l~~~~~----l~~l~~-L~~L~Ls~N~l~~l~~l~~l~~L~~L~Ls~N~l~~l 124 (605)
T 1m9s_A 50 ANNSDIKSVQGIQYLPNVTKLFLNGNKLTDIKP----LTNLKN-LGWLFLDENKIKDLSSLKDLKKLKSLSLEHNGISDI 124 (605)
T ss_dssp CTTCCCCCCTTGGGCTTCCEEECTTSCCCCCGG----GGGCTT-CCEEECCSSCCCCCTTSTTCTTCCEEECTTSCCCCC
T ss_pred CcCCCCCCChHHccCCCCCEEEeeCCCCCCChh----hccCCC-CCEEECcCCCCCCChhhccCCCCCEEEecCCCCCCC
Confidence 3444444333 336788888888876655543 445554 888888888888888888888888888888888877
Q ss_pred CCCcCCCCccEEEccCCCCCCCcCCCCCCCCCEEeCcCCCCccccccccCCCCCcEEEcCCCCCCCcccccCCCCCcEEE
Q 035577 413 TAGALPRGLHILNLSKNNISTIEGLRELTRLRVLDLSYNRILRIGHGLASCSSLKELYLAGNKISEVEGLHRLLKLTVLD 492 (662)
Q Consensus 413 ~~~~~~~~L~~L~Ls~N~L~~lp~l~~L~~L~~LdLs~N~Ls~Lp~~l~~L~~L~~L~Ls~N~L~~l~~l~~L~~L~~Ld 492 (662)
+.....++|+.|+|++|.|+.++.+..+++|+.|+|++|.|+.++. +..+++|+.|+|++|.|++++.+..+++|+.|+
T Consensus 125 ~~l~~l~~L~~L~Ls~N~l~~l~~l~~l~~L~~L~Ls~N~l~~~~~-l~~l~~L~~L~Ls~N~i~~l~~l~~l~~L~~L~ 203 (605)
T 1m9s_A 125 NGLVHLPQLESLYLGNNKITDITVLSRLTKLDTLSLEDNQISDIVP-LAGLTKLQNLYLSKNHISDLRALAGLKNLDVLE 203 (605)
T ss_dssp GGGGGCTTCSEEECCSSCCCCCGGGGSCTTCSEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCBCGGGTTCTTCSEEE
T ss_pred ccccCCCccCEEECCCCccCCchhhcccCCCCEEECcCCcCCCchh-hccCCCCCEEECcCCCCCCChHHccCCCCCEEE
Confidence 5433337888888888888888888888888888888888887765 888888888888888888888888888888888
Q ss_pred CCCCccCcc
Q 035577 493 LRFNKISTA 501 (662)
Q Consensus 493 Ls~N~Ls~l 501 (662)
|++|.|...
T Consensus 204 L~~N~l~~~ 212 (605)
T 1m9s_A 204 LFSQECLNK 212 (605)
T ss_dssp CCSEEEECC
T ss_pred ccCCcCcCC
Confidence 888888765
No 97
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.67 E-value=2.8e-16 Score=154.58 Aligned_cols=147 Identities=27% Similarity=0.361 Sum_probs=131.4
Q ss_pred CCccEEEccCCCCCCCCC--CCCCCCCCEEEccCCCCcccCCCcCC--CCccEEEccCCCCCCCcC--CCCCCCCCEEeC
Q 035577 375 ASATTVQLSNHGLVVIPF--LSAFVSLKVLNLSGNAIVRITAGALP--RGLHILNLSKNNISTIEG--LRELTRLRVLDL 448 (662)
Q Consensus 375 ~sL~~L~Ls~N~L~~lp~--l~~L~~L~~L~Ls~N~L~~l~~~~~~--~~L~~L~Ls~N~L~~lp~--l~~L~~L~~LdL 448 (662)
..++.|+|++|.|+.++. |..+++|++|+|++|.|+.++...|. ++|++|+|++|.|+.++. +..+++|++|+|
T Consensus 28 ~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L 107 (208)
T 2o6s_A 28 AQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQSLPNGVFDKLTQLKELAL 107 (208)
T ss_dssp TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred CCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCCcCCccCHhHhcCccCCCEEEc
Confidence 358999999999998875 88999999999999999999887765 899999999999999873 789999999999
Q ss_pred cCCCCcccccc-ccCCCCCcEEEcCCCCCCCcc--cccCCCCCcEEECCCCccCccccchHhhhcCCCCcEEEccCCCCC
Q 035577 449 SYNRILRIGHG-LASCSSLKELYLAGNKISEVE--GLHRLLKLTVLDLRFNKISTAKCLGQLAANYNSLQAISLEGNPAQ 525 (662)
Q Consensus 449 s~N~Ls~Lp~~-l~~L~~L~~L~Ls~N~L~~l~--~l~~L~~L~~LdLs~N~Ls~l~~l~~~l~~l~~L~~L~Ls~N~l~ 525 (662)
++|.|+.++.. |..+++|+.|+|++|.|+.++ .+..+++|+.|+|++|.+.. .++.|+.|+++.|.++
T Consensus 108 ~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~---------~~~~l~~L~~~~n~~~ 178 (208)
T 2o6s_A 108 NTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDC---------TCPGIRYLSEWINKHS 178 (208)
T ss_dssp CSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBCC---------CTTTTHHHHHHHHHCT
T ss_pred CCCcCcccCHhHhccCCcCCEEECCCCccceeCHHHhccCCCccEEEecCCCeec---------CCCCHHHHHHHHHhCC
Confidence 99999988876 789999999999999999885 37889999999999997763 4578999999999999
Q ss_pred CCCCh
Q 035577 526 KNVGD 530 (662)
Q Consensus 526 ~~~~~ 530 (662)
+.+|.
T Consensus 179 g~ip~ 183 (208)
T 2o6s_A 179 GVVRN 183 (208)
T ss_dssp TTBBC
T ss_pred ceeec
Confidence 97774
No 98
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.67 E-value=4.1e-16 Score=152.75 Aligned_cols=138 Identities=23% Similarity=0.336 Sum_probs=115.1
Q ss_pred CEEEccCCCCcccCCCcCCCCccEEEccCCCCCCCc-CCCCCCCCCEEeCcCCCCcccccc-ccCCCCCcEEEcCCCCCC
Q 035577 400 KVLNLSGNAIVRITAGALPRGLHILNLSKNNISTIE-GLRELTRLRVLDLSYNRILRIGHG-LASCSSLKELYLAGNKIS 477 (662)
Q Consensus 400 ~~L~Ls~N~L~~l~~~~~~~~L~~L~Ls~N~L~~lp-~l~~L~~L~~LdLs~N~Ls~Lp~~-l~~L~~L~~L~Ls~N~L~ 477 (662)
+++++++|.|+.+|.+ ++++|++|+|++|.|+.+| .|..+++|++|+|++|.|+.++.. |..+++|++|+|++|+|+
T Consensus 13 ~~l~~~~~~l~~ip~~-~~~~l~~L~L~~n~i~~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~l~ 91 (193)
T 2wfh_A 13 TVVRCSNKGLKVLPKG-IPRDVTELYLDGNQFTLVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLR 91 (193)
T ss_dssp TEEECTTSCCSSCCSC-CCTTCCEEECCSSCCCSCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC
T ss_pred CEEEcCCCCCCcCCCC-CCCCCCEEECCCCcCchhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCCccC
Confidence 4667777777777644 3457788888888887775 678889999999999999988754 889999999999999999
Q ss_pred Ccc--cccCCCCCcEEECCCCccCccccchHhhhcCCCCcEEEccCCCCCCCCChHHHHHHHHhh
Q 035577 478 EVE--GLHRLLKLTVLDLRFNKISTAKCLGQLAANYNSLQAISLEGNPAQKNVGDEQLKKNLQSL 540 (662)
Q Consensus 478 ~l~--~l~~L~~L~~LdLs~N~Ls~l~~l~~~l~~l~~L~~L~Ls~N~l~~~~~~~~l~~~l~~~ 540 (662)
.++ .|..+++|+.|+|++|.|+.++ +..+..+++|+.|+|++|+|.|.|...++..|+...
T Consensus 92 ~i~~~~f~~l~~L~~L~L~~N~l~~~~--~~~~~~l~~L~~L~L~~N~~~C~c~l~~l~~~~~~~ 154 (193)
T 2wfh_A 92 CIPPRTFDGLKSLRLLSLHGNDISVVP--EGAFNDLSALSHLAIGANPLYCDCNMQWLSDWVKSE 154 (193)
T ss_dssp BCCTTTTTTCTTCCEEECCSSCCCBCC--TTTTTTCTTCCEEECCSSCEECSGGGHHHHHHHHHS
T ss_pred EeCHHHhCCCCCCCEEECCCCCCCeeC--hhhhhcCccccEEEeCCCCeecCCcCHHHHHHHHhc
Confidence 885 5889999999999999999885 556788999999999999999999998888887653
No 99
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.67 E-value=9.9e-16 Score=174.34 Aligned_cols=179 Identities=15% Similarity=0.206 Sum_probs=147.6
Q ss_pred CCCceeeCCccccchhhhHHHhhhccCCccEEEccCCCCCCCCCCCCCCCCCEEEccCCCCcccCCCcCCCCccEEEccC
Q 035577 349 GSTAVKVDGKVTAGMEAVTKYISSLSASATTVQLSNHGLVVIPFLSAFVSLKVLNLSGNAIVRITAGALPRGLHILNLSK 428 (662)
Q Consensus 349 ~L~~L~l~~~~~~~l~~l~~~l~~l~~sL~~L~Ls~N~L~~lp~l~~L~~L~~L~Ls~N~L~~l~~~~~~~~L~~L~Ls~ 428 (662)
+++.|++.++.+.++. ..+ ...|+.|+|++|.|+.+| ..+++|++|+|++|.|+.++. +..+|++|+|++
T Consensus 60 ~L~~L~Ls~n~L~~lp---~~l---~~~L~~L~Ls~N~l~~ip--~~l~~L~~L~Ls~N~l~~ip~--l~~~L~~L~Ls~ 129 (571)
T 3cvr_A 60 QFSELQLNRLNLSSLP---DNL---PPQITVLEITQNALISLP--ELPASLEYLDACDNRLSTLPE--LPASLKHLDVDN 129 (571)
T ss_dssp TCSEEECCSSCCSCCC---SCC---CTTCSEEECCSSCCSCCC--CCCTTCCEEECCSSCCSCCCC--CCTTCCEEECCS
T ss_pred CccEEEeCCCCCCccC---HhH---cCCCCEEECcCCCCcccc--cccCCCCEEEccCCCCCCcch--hhcCCCEEECCC
Confidence 6777777776554432 212 245999999999999999 678999999999999999887 666999999999
Q ss_pred CCCCCCcCCCCCCCCCEEeCcCCCCccccccccCCCCCcEEEcCCCCCCCcccccCCCCCcEEECCCCccCccccchHhh
Q 035577 429 NNISTIEGLRELTRLRVLDLSYNRILRIGHGLASCSSLKELYLAGNKISEVEGLHRLLKLTVLDLRFNKISTAKCLGQLA 508 (662)
Q Consensus 429 N~L~~lp~l~~L~~L~~LdLs~N~Ls~Lp~~l~~L~~L~~L~Ls~N~L~~l~~l~~L~~L~~LdLs~N~Ls~l~~l~~~l 508 (662)
|+|+.+|. .+++|++|+|++|.|+.+|. .+++|+.|+|++|.|+.+|.+. ++|+.|+|++|.|+.++. +
T Consensus 130 N~l~~lp~--~l~~L~~L~Ls~N~l~~lp~---~l~~L~~L~Ls~N~L~~lp~l~--~~L~~L~Ls~N~L~~lp~----~ 198 (571)
T 3cvr_A 130 NQLTMLPE--LPALLEYINADNNQLTMLPE---LPTSLEVLSVRNNQLTFLPELP--ESLEALDVSTNLLESLPA----V 198 (571)
T ss_dssp SCCSCCCC--CCTTCCEEECCSSCCSCCCC---CCTTCCEEECCSSCCSCCCCCC--TTCCEEECCSSCCSSCCC----C
T ss_pred CcCCCCCC--cCccccEEeCCCCccCcCCC---cCCCcCEEECCCCCCCCcchhh--CCCCEEECcCCCCCchhh----H
Confidence 99999988 78999999999999999986 6789999999999999998754 899999999999998753 2
Q ss_pred hcCCCC-------cEEEccCCCCCCCCChHHHHHHHHhhCccCceeecCCCCCCcc
Q 035577 509 ANYNSL-------QAISLEGNPAQKNVGDEQLKKNLQSLLPHLVYFNWQPMKASTL 557 (662)
Q Consensus 509 ~~l~~L-------~~L~Ls~N~l~~~~~~~~l~~~l~~~l~~L~~Ld~~~~~~~~l 557 (662)
.. +| +.|+|++|.|+. +|. .+ ..+++|++|++..|.+...
T Consensus 199 ~~--~L~~~~~~L~~L~Ls~N~l~~-lp~-----~l-~~l~~L~~L~L~~N~l~~~ 245 (571)
T 3cvr_A 199 PV--RNHHSEETEIFFRCRENRITH-IPE-----NI-LSLDPTCTIILEDNPLSSR 245 (571)
T ss_dssp C----------CCEEEECCSSCCCC-CCG-----GG-GGSCTTEEEECCSSSCCHH
T ss_pred HH--hhhcccccceEEecCCCccee-cCH-----HH-hcCCCCCEEEeeCCcCCCc
Confidence 22 56 999999999985 443 22 3489999999999988653
No 100
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.66 E-value=6.1e-16 Score=151.06 Aligned_cols=138 Identities=26% Similarity=0.320 Sum_probs=113.6
Q ss_pred CEEEccCCCCcccCCCcCCCCccEEEccCCCCCCCcC---CCCCCCCCEEeCcCCCCccc-cccccCCCCCcEEEcCCCC
Q 035577 400 KVLNLSGNAIVRITAGALPRGLHILNLSKNNISTIEG---LRELTRLRVLDLSYNRILRI-GHGLASCSSLKELYLAGNK 475 (662)
Q Consensus 400 ~~L~Ls~N~L~~l~~~~~~~~L~~L~Ls~N~L~~lp~---l~~L~~L~~LdLs~N~Ls~L-p~~l~~L~~L~~L~Ls~N~ 475 (662)
++|++++|.|+.+|... +..|++|+|++|.|+.++. +..+++|++|+|++|.|+.+ |..|..+++|++|+|++|+
T Consensus 11 ~~l~~s~~~l~~ip~~~-~~~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~ 89 (192)
T 1w8a_A 11 TTVDCTGRGLKEIPRDI-PLHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENK 89 (192)
T ss_dssp TEEECTTSCCSSCCSCC-CTTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSCC
T ss_pred CEEEcCCCCcCcCccCC-CCCCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCCCc
Confidence 56677777777666433 3477778888887777652 78889999999999999977 5568899999999999999
Q ss_pred CCCcc--cccCCCCCcEEECCCCccCccccchHhhhcCCCCcEEEccCCCCCCCCChHHHHHHHHhh
Q 035577 476 ISEVE--GLHRLLKLTVLDLRFNKISTAKCLGQLAANYNSLQAISLEGNPAQKNVGDEQLKKNLQSL 540 (662)
Q Consensus 476 L~~l~--~l~~L~~L~~LdLs~N~Ls~l~~l~~~l~~l~~L~~L~Ls~N~l~~~~~~~~l~~~l~~~ 540 (662)
|+.++ .+..+++|+.|+|++|+|+++. +..+..+++|++|+|++|+|.|.|+..++..|+...
T Consensus 90 l~~~~~~~~~~l~~L~~L~L~~N~l~~~~--~~~~~~l~~L~~L~L~~N~l~c~c~l~~~~~~l~~~ 154 (192)
T 1w8a_A 90 IKEISNKMFLGLHQLKTLNLYDNQISCVM--PGSFEHLNSLTSLNLASNPFNCNCHLAWFAEWLRKK 154 (192)
T ss_dssp CCEECSSSSTTCTTCCEEECCSSCCCEEC--TTSSTTCTTCCEEECTTCCBCCSGGGHHHHHHHHHH
T ss_pred CCccCHHHhcCCCCCCEEECCCCcCCeeC--HHHhhcCCCCCEEEeCCCCccCcCcchHHHHHHHHc
Confidence 99884 4888999999999999999874 667788999999999999999999988887777654
No 101
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.64 E-value=1.5e-15 Score=162.57 Aligned_cols=169 Identities=26% Similarity=0.270 Sum_probs=140.9
Q ss_pred ccEEEccCCCCCCCCCCCCCCCCCEEEccCCCCcccCCCcCC---CCccEEEccCCCCCCCc--CCCCCCCCCEEeCcCC
Q 035577 377 ATTVQLSNHGLVVIPFLSAFVSLKVLNLSGNAIVRITAGALP---RGLHILNLSKNNISTIE--GLRELTRLRVLDLSYN 451 (662)
Q Consensus 377 L~~L~Ls~N~L~~lp~l~~L~~L~~L~Ls~N~L~~l~~~~~~---~~L~~L~Ls~N~L~~lp--~l~~L~~L~~LdLs~N 451 (662)
.+.+++++++|+.+|. .-...++.|+|++|.|+.++...+. ++|++|+|++|+|+.++ .|..+++|++|+|++|
T Consensus 20 ~~~l~c~~~~l~~iP~-~~~~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N 98 (361)
T 2xot_A 20 SNILSCSKQQLPNVPQ-SLPSYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSN 98 (361)
T ss_dssp TTEEECCSSCCSSCCS-SCCTTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSS
T ss_pred CCEEEeCCCCcCccCc-cCCCCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCCC
Confidence 3589999999999996 2235689999999999999988764 79999999999999886 5999999999999999
Q ss_pred CCcccccc-ccCCCCCcEEEcCCCCCCCcc--cccCCCCCcEEECCCCccCccccchHhh---hcCCCCcEEEccCCCCC
Q 035577 452 RILRIGHG-LASCSSLKELYLAGNKISEVE--GLHRLLKLTVLDLRFNKISTAKCLGQLA---ANYNSLQAISLEGNPAQ 525 (662)
Q Consensus 452 ~Ls~Lp~~-l~~L~~L~~L~Ls~N~L~~l~--~l~~L~~L~~LdLs~N~Ls~l~~l~~~l---~~l~~L~~L~Ls~N~l~ 525 (662)
.|+.++.. |..+++|+.|+|++|+|+.++ .|..+++|+.|+|++|.|+.++ ...+ ..+++|+.|+|++|.|.
T Consensus 99 ~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~l~--~~~~~~~~~l~~L~~L~L~~N~l~ 176 (361)
T 2xot_A 99 HLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFP--VELIKDGNKLPKLMLLDLSSNKLK 176 (361)
T ss_dssp CCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCSCC--GGGTC----CTTCCEEECCSSCCC
T ss_pred cCCcCCHHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCCcCCeeC--HHHhcCcccCCcCCEEECCCCCCC
Confidence 99998765 899999999999999999883 6899999999999999999985 3444 56899999999999998
Q ss_pred CCCChHHHHHHHHhhCcc--CceeecCCCCC
Q 035577 526 KNVGDEQLKKNLQSLLPH--LVYFNWQPMKA 554 (662)
Q Consensus 526 ~~~~~~~l~~~l~~~l~~--L~~Ld~~~~~~ 554 (662)
. ++.. ....++. ++.|++..+.+
T Consensus 177 ~-l~~~-----~~~~l~~~~l~~l~l~~N~~ 201 (361)
T 2xot_A 177 K-LPLT-----DLQKLPAWVKNGLYLHNNPL 201 (361)
T ss_dssp C-CCHH-----HHHHSCHHHHTTEECCSSCE
T ss_pred c-cCHH-----HhhhccHhhcceEEecCCCc
Confidence 6 3332 2234554 36778877765
No 102
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.63 E-value=5.6e-17 Score=177.65 Aligned_cols=274 Identities=19% Similarity=0.164 Sum_probs=175.1
Q ss_pred ccCcccccccCCCCCccCCC---CCCCC----CCceeecCCccCCCcc--hhhhcCCCCCCCCcccCCCCCCCCccCC--
Q 035577 275 SALAKDWVMPDENSVKKLQG---ESLHE----QWDKLPSKHFKIKRIK--EWVNDLQHCSPLEESDETSVSNDQVKRD-- 343 (662)
Q Consensus 275 ~~L~~~~L~ls~N~I~~L~~---~s~l~----~L~~L~l~~~si~~L~--~~~~~L~~l~~L~~L~~l~ls~n~L~~~-- 343 (662)
..|.. ++++.|.+..... ...+. +|+.|++.+|.+.... .+...+..++.|+.|+ ++.+.+...
T Consensus 56 ~~L~~--L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~---Ls~n~i~~~~~ 130 (461)
T 1z7x_W 56 PALAE--LNLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELH---LSDNLLGDAGL 130 (461)
T ss_dssp TTCCE--EECTTCCCHHHHHHHHHHTTCSTTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEE---CCSSBCHHHHH
T ss_pred CCcCE--EeCCCCcCChHHHHHHHHHHhhCCCceeEEEccCCCCCHHHHHHHHHHHccCCceeEEE---CCCCcCchHHH
Confidence 45555 7777777755221 11222 6888888888776421 2334455566555543 444444211
Q ss_pred -------cccCCCCCceeeCCccccch--hhhHHHhhhccCCccEEEccCCCCCCCCC--CC-----CCCCCCEEEccCC
Q 035577 344 -------PKVLNGSTAVKVDGKVTAGM--EAVTKYISSLSASATTVQLSNHGLVVIPF--LS-----AFVSLKVLNLSGN 407 (662)
Q Consensus 344 -------p~~l~~L~~L~l~~~~~~~l--~~l~~~l~~l~~sL~~L~Ls~N~L~~lp~--l~-----~L~~L~~L~Ls~N 407 (662)
.....+|+.|++.++..... ..+...+..++. |+.|+|++|.++.... +. .+++|++|+|++|
T Consensus 131 ~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~-L~~L~L~~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n 209 (461)
T 1z7x_W 131 QLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPD-FKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESC 209 (461)
T ss_dssp HHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCTT-CCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTS
T ss_pred HHHHHHHhcCCCcceEEECCCCCCCHHHHHHHHHHHhhCCC-CCEEECcCCCcchHHHHHHHHHHhcCCCCceEEEccCC
Confidence 11134688888887655432 244555555554 8888888888764321 21 3568888888888
Q ss_pred CCcccCCCcC------CCCccEEEccCCCCCCC------cC-CCCCCCCCEEeCcCCCCcc-----ccccccCCCCCcEE
Q 035577 408 AIVRITAGAL------PRGLHILNLSKNNISTI------EG-LRELTRLRVLDLSYNRILR-----IGHGLASCSSLKEL 469 (662)
Q Consensus 408 ~L~~l~~~~~------~~~L~~L~Ls~N~L~~l------p~-l~~L~~L~~LdLs~N~Ls~-----Lp~~l~~L~~L~~L 469 (662)
.++......+ .++|++|+|++|.|+.. +. +..+++|++|++++|.|+. ++..+..+++|+.|
T Consensus 210 ~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L 289 (461)
T 1z7x_W 210 GVTSDNCRDLCGIVASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKEL 289 (461)
T ss_dssp CCBTTHHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEE
T ss_pred CCcHHHHHHHHHHHHhCCCccEEeccCCcCChHHHHHHHHHHhcCCCCceEEECcCCCCCHHHHHHHHHHHhhCCCcceE
Confidence 8865321111 16888888888888753 22 3457888999999988885 67677788889999
Q ss_pred EcCCCCCCCcc--cc-----cCCCCCcEEECCCCccCccc--cchHhhhcCCCCcEEEccCCCCCCCCChHHHHHHHHhh
Q 035577 470 YLAGNKISEVE--GL-----HRLLKLTVLDLRFNKISTAK--CLGQLAANYNSLQAISLEGNPAQKNVGDEQLKKNLQSL 540 (662)
Q Consensus 470 ~Ls~N~L~~l~--~l-----~~L~~L~~LdLs~N~Ls~l~--~l~~~l~~l~~L~~L~Ls~N~l~~~~~~~~l~~~l~~~ 540 (662)
+|++|.|++.. .+ ...++|+.|+|++|.|+... .++..+..+++|+.|+|++|.+... ....+...+...
T Consensus 290 ~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~-~~~~l~~~l~~~ 368 (461)
T 1z7x_W 290 SLAGNELGDEGARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDA-GVRELCQGLGQP 368 (461)
T ss_dssp ECTTCCCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCSSCCEEECCSSBCHHH-HHHHHHHHHTST
T ss_pred ECCCCCCchHHHHHHHHHhccCCccceeeEcCCCCCchHHHHHHHHHHhhCCCccEEEccCCccccc-cHHHHHHHHcCC
Confidence 99998886541 12 12358899999999888642 3566677888999999999987531 111222222223
Q ss_pred CccCceeecCCCCCC
Q 035577 541 LPHLVYFNWQPMKAS 555 (662)
Q Consensus 541 l~~L~~Ld~~~~~~~ 555 (662)
.++|++|++..+.+.
T Consensus 369 ~~~L~~L~L~~n~i~ 383 (461)
T 1z7x_W 369 GSVLRVLWLADCDVS 383 (461)
T ss_dssp TCCCCEEECTTSCCC
T ss_pred CCceEEEECCCCCCC
Confidence 678999999988876
No 103
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.62 E-value=1.2e-17 Score=190.15 Aligned_cols=127 Identities=24% Similarity=0.333 Sum_probs=114.2
Q ss_pred CCccEEEccCCCCCCCcCCCCCCCCCEEeCcCCCCccccccccCCCCCcEEEcCCCCCCCcccccCCCCCcEEECCCCcc
Q 035577 419 RGLHILNLSKNNISTIEGLRELTRLRVLDLSYNRILRIGHGLASCSSLKELYLAGNKISEVEGLHRLLKLTVLDLRFNKI 498 (662)
Q Consensus 419 ~~L~~L~Ls~N~L~~lp~l~~L~~L~~LdLs~N~Ls~Lp~~l~~L~~L~~L~Ls~N~L~~l~~l~~L~~L~~LdLs~N~L 498 (662)
..|+.|+|++|.|+.+|.+..+++|+.|+|++|.|+.+|..|+.+++|+.|+|++|.|+++|.+..+++|+.|+|++|+|
T Consensus 441 ~~L~~L~Ls~n~l~~lp~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N~l~~lp~l~~l~~L~~L~Ls~N~l 520 (567)
T 1dce_A 441 ADVRVLHLAHKDLTVLCHLEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDNALENVDGVANLPRLQELLLCNNRL 520 (567)
T ss_dssp TTCSEEECTTSCCSSCCCGGGGTTCCEEECCSSCCCCCCGGGGGCTTCCEEECCSSCCCCCGGGTTCSSCCEEECCSSCC
T ss_pred cCceEEEecCCCCCCCcCccccccCcEeecCcccccccchhhhcCCCCCEEECCCCCCCCCcccCCCCCCcEEECCCCCC
Confidence 46999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CccccchHhhhcCCCCcEEEccCCCCCCCCChHHHHHHHHhhCccCceeec
Q 035577 499 STAKCLGQLAANYNSLQAISLEGNPAQKNVGDEQLKKNLQSLLPHLVYFNW 549 (662)
Q Consensus 499 s~l~~l~~~l~~l~~L~~L~Ls~N~l~~~~~~~~l~~~l~~~l~~L~~Ld~ 549 (662)
+++. .|..+..+++|+.|+|++|++++.++. ...+...+|+|+.||+
T Consensus 521 ~~~~-~p~~l~~l~~L~~L~L~~N~l~~~~~~---~~~l~~~lp~L~~L~l 567 (567)
T 1dce_A 521 QQSA-AIQPLVSCPRLVLLNLQGNSLCQEEGI---QERLAEMLPSVSSILT 567 (567)
T ss_dssp CSSS-TTGGGGGCTTCCEEECTTSGGGGSSSC---TTHHHHHCTTCSEEEC
T ss_pred CCCC-CcHHHhcCCCCCEEEecCCcCCCCccH---HHHHHHHCcccCccCC
Confidence 9873 156678999999999999999986653 3345677999999864
No 104
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.62 E-value=1.2e-15 Score=149.14 Aligned_cols=149 Identities=19% Similarity=0.254 Sum_probs=125.1
Q ss_pred CCCCCceeeCCccccchhhhHHHhhhccCCccEEEccCCCCCCCCCCCCCCCCCEEEccCCCCcccCCCcCC--CCccEE
Q 035577 347 LNGSTAVKVDGKVTAGMEAVTKYISSLSASATTVQLSNHGLVVIPFLSAFVSLKVLNLSGNAIVRITAGALP--RGLHIL 424 (662)
Q Consensus 347 l~~L~~L~l~~~~~~~l~~l~~~l~~l~~sL~~L~Ls~N~L~~lp~l~~L~~L~~L~Ls~N~L~~l~~~~~~--~~L~~L 424 (662)
+..|+.|++.++.+..+. .+..++. |+.|++++|.++.++.+..+++|++|+|++|.++......+. ++|++|
T Consensus 43 l~~L~~L~l~~n~i~~l~----~l~~l~~-L~~L~l~~n~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L 117 (197)
T 4ezg_A 43 MNSLTYITLANINVTDLT----GIEYAHN-IKDLTINNIHATNYNPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLL 117 (197)
T ss_dssp HHTCCEEEEESSCCSCCT----TGGGCTT-CSEEEEESCCCSCCGGGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCEE
T ss_pred cCCccEEeccCCCccChH----HHhcCCC-CCEEEccCCCCCcchhhhcCCCCCEEEeECCccCcccChhhcCCCCCCEE
Confidence 677888888886665544 2445554 999999999999888899999999999999999874444444 899999
Q ss_pred EccCCCCCC--CcCCCCCCCCCEEeCcCCC-CccccccccCCCCCcEEEcCCCCCCCcccccCCCCCcEEECCCCccCcc
Q 035577 425 NLSKNNIST--IEGLRELTRLRVLDLSYNR-ILRIGHGLASCSSLKELYLAGNKISEVEGLHRLLKLTVLDLRFNKISTA 501 (662)
Q Consensus 425 ~Ls~N~L~~--lp~l~~L~~L~~LdLs~N~-Ls~Lp~~l~~L~~L~~L~Ls~N~L~~l~~l~~L~~L~~LdLs~N~Ls~l 501 (662)
+|++|.|+. ++.+..+++|++|+|++|. ++.+| .+..+++|+.|++++|.|++++.+..+++|+.|++++|+|...
T Consensus 118 ~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~~~~-~l~~l~~L~~L~l~~n~i~~~~~l~~l~~L~~L~l~~N~i~~~ 196 (197)
T 4ezg_A 118 DISHSAHDDSILTKINTLPKVNSIDLSYNGAITDIM-PLKTLPELKSLNIQFDGVHDYRGIEDFPKLNQLYAFSQTIGGK 196 (197)
T ss_dssp ECCSSBCBGGGHHHHTTCSSCCEEECCSCTBCCCCG-GGGGCSSCCEEECTTBCCCCCTTGGGCSSCCEEEECBC-----
T ss_pred EecCCccCcHhHHHHhhCCCCCEEEccCCCCccccH-hhcCCCCCCEEECCCCCCcChHHhccCCCCCEEEeeCcccCCc
Confidence 999999997 3478999999999999998 88988 7999999999999999999998899999999999999998753
No 105
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.62 E-value=5.1e-15 Score=148.54 Aligned_cols=126 Identities=21% Similarity=0.342 Sum_probs=116.1
Q ss_pred CCccEEEccCCCCCCCCC--CCCCCCCCEEEccCCCCcccCCCcCC--CCccEEEccCCCCCCCc--CCCCCCCCCEEeC
Q 035577 375 ASATTVQLSNHGLVVIPF--LSAFVSLKVLNLSGNAIVRITAGALP--RGLHILNLSKNNISTIE--GLRELTRLRVLDL 448 (662)
Q Consensus 375 ~sL~~L~Ls~N~L~~lp~--l~~L~~L~~L~Ls~N~L~~l~~~~~~--~~L~~L~Ls~N~L~~lp--~l~~L~~L~~LdL 448 (662)
..|+.|+|++|.|+.++. |..+++|++|+|++|.|+.++...|. ++|++|+|++|+|+.++ .|..+++|++|+|
T Consensus 40 ~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~L 119 (229)
T 3e6j_A 40 TNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTNQLTVLPSAVFDRLVHLKELFM 119 (229)
T ss_dssp TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred CCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEECCCCcCCccChhHhCcchhhCeEec
Confidence 458999999999998853 89999999999999999999987765 89999999999999987 3789999999999
Q ss_pred cCCCCccccccccCCCCCcEEEcCCCCCCCcc--cccCCCCCcEEECCCCccCc
Q 035577 449 SYNRILRIGHGLASCSSLKELYLAGNKISEVE--GLHRLLKLTVLDLRFNKIST 500 (662)
Q Consensus 449 s~N~Ls~Lp~~l~~L~~L~~L~Ls~N~L~~l~--~l~~L~~L~~LdLs~N~Ls~ 500 (662)
++|.|+.+|..+..+++|+.|+|++|+|+.++ .+..+++|+.|+|++|.+..
T Consensus 120 s~N~l~~lp~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c 173 (229)
T 3e6j_A 120 CCNKLTELPRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGNPWDC 173 (229)
T ss_dssp CSSCCCSCCTTGGGCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCBCT
T ss_pred cCCcccccCcccccCCCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCCccC
Confidence 99999999999999999999999999999985 58889999999999999884
No 106
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.62 E-value=2.2e-15 Score=157.61 Aligned_cols=171 Identities=18% Similarity=0.196 Sum_probs=125.7
Q ss_pred ccEEEccCCCCCCC-CC-C--CCCCCCCEEEccCCCCcccCC----Cc--CCCCccEEEccCCCCCCCc--CCCCCCCCC
Q 035577 377 ATTVQLSNHGLVVI-PF-L--SAFVSLKVLNLSGNAIVRITA----GA--LPRGLHILNLSKNNISTIE--GLRELTRLR 444 (662)
Q Consensus 377 L~~L~Ls~N~L~~l-p~-l--~~L~~L~~L~Ls~N~L~~l~~----~~--~~~~L~~L~Ls~N~L~~lp--~l~~L~~L~ 444 (662)
|++|+|++|.++.. |. + ..+++|++|+|++|.|+.... .. ..++|++|+|++|.|+.++ .+..+++|+
T Consensus 93 L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~ 172 (310)
T 4glp_A 93 LKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWLKPGLKVLSIAQAHSPAFSCEQVRAFPALT 172 (310)
T ss_dssp CCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTBCSCCCEEEEECCSSCCCCTTSCCCCTTCC
T ss_pred eeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhhccCCCEEEeeCCCcchhhHHHhccCCCCC
Confidence 88899999888744 43 4 788889999999888875322 11 1268889999999888765 577888899
Q ss_pred EEeCcCCCCcc---cccc--ccCCCCCcEEEcCCCCCCCccc-----ccCCCCCcEEECCCCccCccccchHhhhcC---
Q 035577 445 VLDLSYNRILR---IGHG--LASCSSLKELYLAGNKISEVEG-----LHRLLKLTVLDLRFNKISTAKCLGQLAANY--- 511 (662)
Q Consensus 445 ~LdLs~N~Ls~---Lp~~--l~~L~~L~~L~Ls~N~L~~l~~-----l~~L~~L~~LdLs~N~Ls~l~~l~~~l~~l--- 511 (662)
+|+|++|.+.. ++.. +..+++|++|+|++|+|+.++. +..+++|++|+|++|.|++.. |..+..+
T Consensus 173 ~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~~l~~L~~L~Ls~N~l~~~~--p~~~~~~~~~ 250 (310)
T 4glp_A 173 SLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMETPTGVCAALAAAGVQPHSLDLSHNSLRATV--NPSAPRCMWS 250 (310)
T ss_dssp EEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCCHHHHHHHHHHHTCCCSSEECTTSCCCCCC--CSCCSSCCCC
T ss_pred EEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCchHHHHHHHHhcCCCCCEEECCCCCCCccc--hhhHHhccCc
Confidence 99999988753 4322 4678888899999988887643 467788889999999888762 3333344
Q ss_pred CCCcEEEccCCCCCCCCChHHHHHHHHhhCccCceeecCCCCCCccc
Q 035577 512 NSLQAISLEGNPAQKNVGDEQLKKNLQSLLPHLVYFNWQPMKASTLK 558 (662)
Q Consensus 512 ~~L~~L~Ls~N~l~~~~~~~~l~~~l~~~l~~L~~Ld~~~~~~~~l~ 558 (662)
++|++|+|++|.++. +|.. ..++|+.|+++.+.+..++
T Consensus 251 ~~L~~L~Ls~N~l~~-lp~~--------~~~~L~~L~Ls~N~l~~~~ 288 (310)
T 4glp_A 251 SALNSLNLSFAGLEQ-VPKG--------LPAKLRVLDLSSNRLNRAP 288 (310)
T ss_dssp TTCCCEECCSSCCCS-CCSC--------CCSCCSCEECCSCCCCSCC
T ss_pred CcCCEEECCCCCCCc-hhhh--------hcCCCCEEECCCCcCCCCc
Confidence 688889999888884 4431 1378888888888877653
No 107
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.61 E-value=3.6e-16 Score=167.26 Aligned_cols=207 Identities=19% Similarity=0.228 Sum_probs=114.5
Q ss_pred CCCceeeCCccccc--hhhhHHHhhhccCCccEEEccCCCCCCCCC------CCCC-CCCCEEEccCCCCcccCCCcC--
Q 035577 349 GSTAVKVDGKVTAG--MEAVTKYISSLSASATTVQLSNHGLVVIPF------LSAF-VSLKVLNLSGNAIVRITAGAL-- 417 (662)
Q Consensus 349 ~L~~L~l~~~~~~~--l~~l~~~l~~l~~sL~~L~Ls~N~L~~lp~------l~~L-~~L~~L~Ls~N~L~~l~~~~~-- 417 (662)
+|+.|+++++.+.. ...+...+......|++|+|++|.|+..+. +..+ ++|++|+|++|.|+..+...+
T Consensus 52 ~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~ 131 (362)
T 3goz_A 52 SVTSLNLSGNSLGFKNSDELVQILAAIPANVTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQ 131 (362)
T ss_dssp TCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHH
T ss_pred ceeEEECcCCCCCHHHHHHHHHHHhccCCCccEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHH
Confidence 45555555544332 222333333333447777777777764431 3333 677777777777766554322
Q ss_pred -----CCCccEEEccCCCCCCCc------CCCCCC-CCCEEeCcCCCCccccc-----cccCC-CCCcEEEcCCCCCCC-
Q 035577 418 -----PRGLHILNLSKNNISTIE------GLRELT-RLRVLDLSYNRILRIGH-----GLASC-SSLKELYLAGNKISE- 478 (662)
Q Consensus 418 -----~~~L~~L~Ls~N~L~~lp------~l~~L~-~L~~LdLs~N~Ls~Lp~-----~l~~L-~~L~~L~Ls~N~L~~- 478 (662)
+.+|++|+|++|.|+... .+..++ +|++|+|++|.|+.... .+..+ ++|++|+|++|.|++
T Consensus 132 ~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~ 211 (362)
T 3goz_A 132 AFSNLPASITSLNLRGNDLGIKSSDELIQILAAIPANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANLLGLK 211 (362)
T ss_dssp HHTTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGS
T ss_pred HHHhCCCceeEEEccCCcCCHHHHHHHHHHHhcCCccccEeeecCCCCchhhHHHHHHHHHhCCCCCCEEECCCCCCChh
Confidence 246777777777776321 233343 77777777777764332 23444 477777777777766
Q ss_pred ----cc-cccC-CCCCcEEECCCCccCccc--cchHhhhcCCCCcEEEccCCCCCCCCChHHHH--HHHHhhCccCceee
Q 035577 479 ----VE-GLHR-LLKLTVLDLRFNKISTAK--CLGQLAANYNSLQAISLEGNPAQKNVGDEQLK--KNLQSLLPHLVYFN 548 (662)
Q Consensus 479 ----l~-~l~~-L~~L~~LdLs~N~Ls~l~--~l~~~l~~l~~L~~L~Ls~N~l~~~~~~~~l~--~~l~~~l~~L~~Ld 548 (662)
++ .+.. .++|+.|+|++|.|++.. .+...+..+++|+.|+|++|.+....+ ..+. ......+++|++||
T Consensus 212 ~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~~~~l~~L~~L~L~~n~l~~i~~-~~~~~l~~~~~~l~~L~~Ld 290 (362)
T 3goz_A 212 SYAELAYIFSSIPNHVVSLNLCLNCLHGPSLENLKLLKDSLKHLQTVYLDYDIVKNMSK-EQCKALGAAFPNIQKIILVD 290 (362)
T ss_dssp CHHHHHHHHHHSCTTCCEEECCSSCCCCCCHHHHHHTTTTTTTCSEEEEEHHHHTTCCH-HHHHHHHTTSTTCCEEEEEC
T ss_pred HHHHHHHHHhcCCCCceEEECcCCCCCcHHHHHHHHHHhcCCCccEEEeccCCccccCH-HHHHHHHHHhccCCceEEEe
Confidence 22 3433 347777777777777642 233444566777777777776543221 1111 11122345566667
Q ss_pred cCCCCCCc
Q 035577 549 WQPMKAST 556 (662)
Q Consensus 549 ~~~~~~~~ 556 (662)
+..+.+..
T Consensus 291 L~~N~l~~ 298 (362)
T 3goz_A 291 KNGKEIHP 298 (362)
T ss_dssp TTSCBCCG
T ss_pred cCCCcCCC
Confidence 76666543
No 108
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.60 E-value=2.6e-16 Score=172.37 Aligned_cols=275 Identities=13% Similarity=0.081 Sum_probs=190.0
Q ss_pred cCcccccccCCCCCccC-----CC-CCCCCCCceeecCCccCCCc--chhhhc-CCCCCCCCcccCCCCCCCCccCC---
Q 035577 276 ALAKDWVMPDENSVKKL-----QG-ESLHEQWDKLPSKHFKIKRI--KEWVND-LQHCSPLEESDETSVSNDQVKRD--- 343 (662)
Q Consensus 276 ~L~~~~L~ls~N~I~~L-----~~-~s~l~~L~~L~l~~~si~~L--~~~~~~-L~~l~~L~~L~~l~ls~n~L~~~--- 343 (662)
.+.. ++++.|.+... +. +..+++|+.|++.+|.+... ..+... ......|+.|+ ++.+.+...
T Consensus 86 ~L~~--L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~---L~~n~l~~~~~~ 160 (461)
T 1z7x_W 86 KIQK--LSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQ---LEYCSLSAASCE 160 (461)
T ss_dssp CCCE--EECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEE---CTTSCCBGGGHH
T ss_pred ceeE--EEccCCCCCHHHHHHHHHHHccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEE---CCCCCCCHHHHH
Confidence 3555 88999998853 33 77888999999999987652 222222 12233455444 444554432
Q ss_pred --c---ccCCCCCceeeCCccccch--hhhHHHhhhccCCccEEEccCCCCCCC-----CC-CCCCCCCCEEEccCCCCc
Q 035577 344 --P---KVLNGSTAVKVDGKVTAGM--EAVTKYISSLSASATTVQLSNHGLVVI-----PF-LSAFVSLKVLNLSGNAIV 410 (662)
Q Consensus 344 --p---~~l~~L~~L~l~~~~~~~l--~~l~~~l~~l~~sL~~L~Ls~N~L~~l-----p~-l~~L~~L~~L~Ls~N~L~ 410 (662)
+ ..+.+|+.|++.++..... ..+...+......|+.|+|++|.++.. +. +..+++|++|+|++|.|+
T Consensus 161 ~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~ 240 (461)
T 1z7x_W 161 PLASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLG 240 (461)
T ss_dssp HHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSBCH
T ss_pred HHHHHHhhCCCCCEEECcCCCcchHHHHHHHHHHhcCCCCceEEEccCCCCcHHHHHHHHHHHHhCCCccEEeccCCcCC
Confidence 1 2257899999998765432 223333433344699999999999863 43 678899999999999987
Q ss_pred ccC-----CCcC--CCCccEEEccCCCCCC-----Cc-CCCCCCCCCEEeCcCCCCcc-----cccccc-CCCCCcEEEc
Q 035577 411 RIT-----AGAL--PRGLHILNLSKNNIST-----IE-GLRELTRLRVLDLSYNRILR-----IGHGLA-SCSSLKELYL 471 (662)
Q Consensus 411 ~l~-----~~~~--~~~L~~L~Ls~N~L~~-----lp-~l~~L~~L~~LdLs~N~Ls~-----Lp~~l~-~L~~L~~L~L 471 (662)
... ...+ .++|++|+|++|.|+. ++ .+..+++|++|+|++|.|+. +...+. ..++|+.|+|
T Consensus 241 ~~~~~~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L 320 (461)
T 1z7x_W 241 DVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWV 320 (461)
T ss_dssp HHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEEEC
T ss_pred hHHHHHHHHHHhcCCCCceEEECcCCCCCHHHHHHHHHHHhhCCCcceEECCCCCCchHHHHHHHHHhccCCccceeeEc
Confidence 642 1112 2689999999999997 33 46678999999999999873 332222 3479999999
Q ss_pred CCCCCCCc------ccccCCCCCcEEECCCCccCccc--cchHhhhc-CCCCcEEEccCCCCCCCCChHHHHHHHHhhCc
Q 035577 472 AGNKISEV------EGLHRLLKLTVLDLRFNKISTAK--CLGQLAAN-YNSLQAISLEGNPAQKNVGDEQLKKNLQSLLP 542 (662)
Q Consensus 472 s~N~L~~l------~~l~~L~~L~~LdLs~N~Ls~l~--~l~~~l~~-l~~L~~L~Ls~N~l~~~~~~~~l~~~l~~~l~ 542 (662)
++|.++.. ..+..+++|+.|+|++|.|++.. .+...+.. +++|+.|+|++|.++.. ...........++
T Consensus 321 ~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~--~~~~l~~~l~~~~ 398 (461)
T 1z7x_W 321 KSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDS--SCSSLAATLLANH 398 (461)
T ss_dssp TTSCCBGGGHHHHHHHHHHCSSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHH--HHHHHHHHHHHCC
T ss_pred CCCCCchHHHHHHHHHHhhCCCccEEEccCCccccccHHHHHHHHcCCCCceEEEECCCCCCChh--hHHHHHHHHHhCC
Confidence 99999865 24677899999999999998752 22233332 67999999999988631 0112223345689
Q ss_pred cCceeecCCCCCCcc
Q 035577 543 HLVYFNWQPMKASTL 557 (662)
Q Consensus 543 ~L~~Ld~~~~~~~~l 557 (662)
+|++|++..+.+...
T Consensus 399 ~L~~L~l~~N~i~~~ 413 (461)
T 1z7x_W 399 SLRELDLSNNCLGDA 413 (461)
T ss_dssp CCCEEECCSSSCCHH
T ss_pred CccEEECCCCCCCHH
Confidence 999999999987653
No 109
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.59 E-value=8.9e-15 Score=145.98 Aligned_cols=147 Identities=26% Similarity=0.337 Sum_probs=129.5
Q ss_pred CCEEEccCCCCcccCCCcCCCCccEEEccCCCCCCCc--CCCCCCCCCEEeCcCCCCccc-cccccCCCCCcEEEcCCCC
Q 035577 399 LKVLNLSGNAIVRITAGALPRGLHILNLSKNNISTIE--GLRELTRLRVLDLSYNRILRI-GHGLASCSSLKELYLAGNK 475 (662)
Q Consensus 399 L~~L~Ls~N~L~~l~~~~~~~~L~~L~Ls~N~L~~lp--~l~~L~~L~~LdLs~N~Ls~L-p~~l~~L~~L~~L~Ls~N~ 475 (662)
-+.++++++.++.+|.. +++.|+.|+|++|.|+.++ .|..+++|++|+|++|.|+.+ |..|..+++|++|+|++|.
T Consensus 13 ~~~v~c~~~~l~~iP~~-l~~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~ 91 (220)
T 2v9t_B 13 NNIVDCRGKGLTEIPTN-LPETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNK 91 (220)
T ss_dssp TTEEECTTSCCSSCCSS-CCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSSC
T ss_pred CCEEEcCCCCcCcCCCc-cCcCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCCc
Confidence 36899999999999864 4579999999999999886 689999999999999999987 5669999999999999999
Q ss_pred CCCcc--cccCCCCCcEEECCCCccCccccchHhhhcCCCCcEEEccCCCCCCCCChHHHHHHHHhhCccCceeecCCCC
Q 035577 476 ISEVE--GLHRLLKLTVLDLRFNKISTAKCLGQLAANYNSLQAISLEGNPAQKNVGDEQLKKNLQSLLPHLVYFNWQPMK 553 (662)
Q Consensus 476 L~~l~--~l~~L~~L~~LdLs~N~Ls~l~~l~~~l~~l~~L~~L~Ls~N~l~~~~~~~~l~~~l~~~l~~L~~Ld~~~~~ 553 (662)
|+.++ .|..+++|+.|+|++|.|+.+. +..|..+++|+.|+|++|.+++..+. .+..+++|++|++..+.
T Consensus 92 l~~l~~~~f~~l~~L~~L~L~~N~l~~~~--~~~~~~l~~L~~L~L~~N~l~~~~~~------~~~~l~~L~~L~L~~N~ 163 (220)
T 2v9t_B 92 ITELPKSLFEGLFSLQLLLLNANKINCLR--VDAFQDLHNLNLLSLYDNKLQTIAKG------TFSPLRAIQTMHLAQNP 163 (220)
T ss_dssp CCCCCTTTTTTCTTCCEEECCSSCCCCCC--TTTTTTCTTCCEEECCSSCCSCCCTT------TTTTCTTCCEEECCSSC
T ss_pred CCccCHhHccCCCCCCEEECCCCCCCEeC--HHHcCCCCCCCEEECCCCcCCEECHH------HHhCCCCCCEEEeCCCC
Confidence 99996 3788999999999999999985 67788999999999999999875442 24568899999999887
Q ss_pred C
Q 035577 554 A 554 (662)
Q Consensus 554 ~ 554 (662)
+
T Consensus 164 ~ 164 (220)
T 2v9t_B 164 F 164 (220)
T ss_dssp E
T ss_pred c
Confidence 5
No 110
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.59 E-value=7.8e-15 Score=146.38 Aligned_cols=148 Identities=22% Similarity=0.297 Sum_probs=129.5
Q ss_pred CCEEEccCCCCcccCCCcCCCCccEEEccCCCCCCCc---CCCCCCCCCEEeCcCCCCccccc-cccCCCCCcEEEcCCC
Q 035577 399 LKVLNLSGNAIVRITAGALPRGLHILNLSKNNISTIE---GLRELTRLRVLDLSYNRILRIGH-GLASCSSLKELYLAGN 474 (662)
Q Consensus 399 L~~L~Ls~N~L~~l~~~~~~~~L~~L~Ls~N~L~~lp---~l~~L~~L~~LdLs~N~Ls~Lp~-~l~~L~~L~~L~Ls~N 474 (662)
-+.|++++|.++.+|. .++..+++|+|++|.|+.++ .|..+++|++|+|++|.|+.++. .|..+++|++|+|++|
T Consensus 13 ~~~l~~s~n~l~~iP~-~~~~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N 91 (220)
T 2v70_A 13 GTTVDCSNQKLNKIPE-HIPQYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSN 91 (220)
T ss_dssp TTEEECCSSCCSSCCS-CCCTTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSS
T ss_pred CCEeEeCCCCcccCcc-CCCCCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCCC
Confidence 4689999999999985 45678899999999999873 37899999999999999998876 5999999999999999
Q ss_pred CCCCcc--cccCCCCCcEEECCCCccCccccchHhhhcCCCCcEEEccCCCCCCCCChHHHHHHHHhhCccCceeecCCC
Q 035577 475 KISEVE--GLHRLLKLTVLDLRFNKISTAKCLGQLAANYNSLQAISLEGNPAQKNVGDEQLKKNLQSLLPHLVYFNWQPM 552 (662)
Q Consensus 475 ~L~~l~--~l~~L~~L~~LdLs~N~Ls~l~~l~~~l~~l~~L~~L~Ls~N~l~~~~~~~~l~~~l~~~l~~L~~Ld~~~~ 552 (662)
.|+.++ .+..+++|+.|+|++|.|+.+. +..+..+++|+.|+|++|.+++..+. .+..+++|++|++..+
T Consensus 92 ~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~--~~~~~~l~~L~~L~L~~N~l~~~~~~------~~~~l~~L~~L~L~~N 163 (220)
T 2v70_A 92 RLENVQHKMFKGLESLKTLMLRSNRITCVG--NDSFIGLSSVRLLSLYDNQITTVAPG------AFDTLHSLSTLNLLAN 163 (220)
T ss_dssp CCCCCCGGGGTTCSSCCEEECTTSCCCCBC--TTSSTTCTTCSEEECTTSCCCCBCTT------TTTTCTTCCEEECCSC
T ss_pred ccCccCHhHhcCCcCCCEEECCCCcCCeEC--HhHcCCCccCCEEECCCCcCCEECHH------HhcCCCCCCEEEecCc
Confidence 999985 4889999999999999999985 66778999999999999999986543 2456899999999988
Q ss_pred CCC
Q 035577 553 KAS 555 (662)
Q Consensus 553 ~~~ 555 (662)
.+.
T Consensus 164 ~l~ 166 (220)
T 2v70_A 164 PFN 166 (220)
T ss_dssp CEE
T ss_pred CCc
Confidence 754
No 111
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.59 E-value=1.4e-14 Score=138.78 Aligned_cols=137 Identities=25% Similarity=0.368 Sum_probs=106.7
Q ss_pred CCEEEccCCCCcccCCCcCCCCccEEEccCCCCCCCc--CCCCCCCCCEEeCcCCCCcccccc-ccCCCCCcEEEcCCCC
Q 035577 399 LKVLNLSGNAIVRITAGALPRGLHILNLSKNNISTIE--GLRELTRLRVLDLSYNRILRIGHG-LASCSSLKELYLAGNK 475 (662)
Q Consensus 399 L~~L~Ls~N~L~~l~~~~~~~~L~~L~Ls~N~L~~lp--~l~~L~~L~~LdLs~N~Ls~Lp~~-l~~L~~L~~L~Ls~N~ 475 (662)
.+.+++++|.++.+|.. ++++|++|+|++|+|+.++ .+..+++|++|+|++|.|+.+|.. |..+++|++|+|++|.
T Consensus 9 ~~~l~~~~~~l~~~p~~-~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~ 87 (177)
T 2o6r_A 9 GTEIRCNSKGLTSVPTG-IPSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENK 87 (177)
T ss_dssp TTEEECCSSCCSSCCTT-CCTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred CCEEEecCCCCccCCCC-CCCCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCCCC
Confidence 35566666666666533 3357777777777777765 367888999999999999988765 6889999999999999
Q ss_pred CCCcc--cccCCCCCcEEECCCCccCccccchHhhhcCCCCcEEEccCCCCCCCCCh-HHHHHHHH
Q 035577 476 ISEVE--GLHRLLKLTVLDLRFNKISTAKCLGQLAANYNSLQAISLEGNPAQKNVGD-EQLKKNLQ 538 (662)
Q Consensus 476 L~~l~--~l~~L~~L~~LdLs~N~Ls~l~~l~~~l~~l~~L~~L~Ls~N~l~~~~~~-~~l~~~l~ 538 (662)
|+.++ .+..+++|+.|+|++|.|+.++ +..+..+++|+.|+|++|++.|.++. ..+..|+.
T Consensus 88 l~~~~~~~~~~l~~L~~L~l~~N~l~~~~--~~~~~~l~~L~~L~l~~N~~~~~~~~l~~l~~~~~ 151 (177)
T 2o6r_A 88 LQSLPNGVFDKLTQLKELALDTNQLKSVP--DGIFDRLTSLQKIWLHTNPWDCSCPRIDYLSRWLN 151 (177)
T ss_dssp CCCCCTTTTTTCTTCCEEECCSSCCSCCC--TTTTTTCTTCCEEECCSSCBCCCHHHHHHHHHHHH
T ss_pred ccccCHHHhhCCcccCEEECcCCcceEeC--HHHhcCCcccCEEEecCCCeeccCccHHHHHHHHh
Confidence 99885 3788999999999999999875 45567899999999999999998874 33444443
No 112
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.56 E-value=3.1e-14 Score=151.57 Aligned_cols=139 Identities=22% Similarity=0.194 Sum_probs=68.6
Q ss_pred ccEEEccCCCCCCCCC--CCCCCCCCEEEccC-CCCcccCCCcCC---CCccEEEccCCCCCCCc-CCCCCCCCCEEeCc
Q 035577 377 ATTVQLSNHGLVVIPF--LSAFVSLKVLNLSG-NAIVRITAGALP---RGLHILNLSKNNISTIE-GLRELTRLRVLDLS 449 (662)
Q Consensus 377 L~~L~Ls~N~L~~lp~--l~~L~~L~~L~Ls~-N~L~~l~~~~~~---~~L~~L~Ls~N~L~~lp-~l~~L~~L~~LdLs 449 (662)
|+.|++++|.|+.+|. +.....+..|++.+ +.+..++...|. ..++.|+|++|+|+.++ .+....+|+.|+++
T Consensus 106 L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~i~~i~~~~f~~~~L~~l~l~ 185 (350)
T 4ay9_X 106 LQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQEIHNSAFNGTQLDELNLS 185 (350)
T ss_dssp CCEEEEEEECCSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCCEECTTSSTTEEEEEEECT
T ss_pred cccccccccccccCCchhhcccchhhhhhhccccccccccccchhhcchhhhhhccccccccCCChhhccccchhHHhhc
Confidence 5556666665555553 33334445555543 455555544443 34555566666655554 23334455555554
Q ss_pred -CCCCcccccc-ccCCCCCcEEEcCCCCCCCcccccCCCCCcEEECCC-CccCccccchHhhhcCCCCcEEEcc
Q 035577 450 -YNRILRIGHG-LASCSSLKELYLAGNKISEVEGLHRLLKLTVLDLRF-NKISTAKCLGQLAANYNSLQAISLE 520 (662)
Q Consensus 450 -~N~Ls~Lp~~-l~~L~~L~~L~Ls~N~L~~l~~l~~L~~L~~LdLs~-N~Ls~l~~l~~~l~~l~~L~~L~Ls 520 (662)
+|.++.||.. |..+++|++|+|++|+|+.+|. ..+.+|+.|.+.+ +.++.++ . +..+++|+.+++.
T Consensus 186 ~~n~l~~i~~~~f~~l~~L~~LdLs~N~l~~lp~-~~~~~L~~L~~l~~~~l~~lP---~-l~~l~~L~~l~l~ 254 (350)
T 4ay9_X 186 DNNNLEELPNDVFHGASGPVILDISRTRIHSLPS-YGLENLKKLRARSTYNLKKLP---T-LEKLVALMEASLT 254 (350)
T ss_dssp TCTTCCCCCTTTTTTEECCSEEECTTSCCCCCCS-SSCTTCCEEECTTCTTCCCCC---C-TTTCCSCCEEECS
T ss_pred cCCcccCCCHHHhccCcccchhhcCCCCcCccCh-hhhccchHhhhccCCCcCcCC---C-chhCcChhhCcCC
Confidence 3455555543 4555566666666666555542 1233444444322 2233332 1 2445555555554
No 113
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.55 E-value=3.2e-15 Score=143.45 Aligned_cols=132 Identities=26% Similarity=0.324 Sum_probs=79.3
Q ss_pred CCCCCCCCEEEccCCCCcccCCCcCC-CCccEEEccCCCCCCCcCCCCCCCCCEEeCcCCCCcccccc-ccCCCCCcEEE
Q 035577 393 LSAFVSLKVLNLSGNAIVRITAGALP-RGLHILNLSKNNISTIEGLRELTRLRVLDLSYNRILRIGHG-LASCSSLKELY 470 (662)
Q Consensus 393 l~~L~~L~~L~Ls~N~L~~l~~~~~~-~~L~~L~Ls~N~L~~lp~l~~L~~L~~LdLs~N~Ls~Lp~~-l~~L~~L~~L~ 470 (662)
+..+.+|+.|+|++|.|+.++..... ++|++|+|++|.|+.++.+..+++|++|+|++|.|+.+|.. +..+++|++|+
T Consensus 15 ~~~~~~L~~L~l~~n~l~~i~~~~~~~~~L~~L~Ls~N~l~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ 94 (176)
T 1a9n_A 15 YTNAVRDRELDLRGYKIPVIENLGATLDQFDAIDFSDNEIRKLDGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTELI 94 (176)
T ss_dssp EECTTSCEEEECTTSCCCSCCCGGGGTTCCSEEECCSSCCCEECCCCCCSSCCEEECCSSCCCEECSCHHHHCTTCCEEE
T ss_pred cCCcCCceEEEeeCCCCchhHHhhhcCCCCCEEECCCCCCCcccccccCCCCCEEECCCCcccccCcchhhcCCCCCEEE
Confidence 45566667777777766665421111 36666666666666666666667777777777777766654 36666666666
Q ss_pred cCCCCCCCcc---cccCCCCCcEEECCCCccCccccc-hHhhhcCCCCcEEEccCCCC
Q 035577 471 LAGNKISEVE---GLHRLLKLTVLDLRFNKISTAKCL-GQLAANYNSLQAISLEGNPA 524 (662)
Q Consensus 471 Ls~N~L~~l~---~l~~L~~L~~LdLs~N~Ls~l~~l-~~~l~~l~~L~~L~Ls~N~l 524 (662)
|++|.|+.++ .+..+++|+.|++++|.|+.++.. ...+..+++|+.|++++|.+
T Consensus 95 L~~N~i~~~~~~~~l~~l~~L~~L~l~~N~i~~~~~~~~~~~~~l~~L~~Ld~~~n~~ 152 (176)
T 1a9n_A 95 LTNNSLVELGDLDPLASLKSLTYLCILRNPVTNKKHYRLYVIYKVPQVRVLDFQKVKL 152 (176)
T ss_dssp CCSCCCCCGGGGGGGGGCTTCCEEECCSSGGGGSTTHHHHHHHHCTTCSEETTEECCH
T ss_pred CCCCcCCcchhhHhhhcCCCCCEEEecCCCCCCcHhHHHHHHHHCCccceeCCCcCCH
Confidence 6666666654 355566666666666666554210 01345566666666666553
No 114
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.53 E-value=3.2e-14 Score=135.01 Aligned_cols=108 Identities=24% Similarity=0.301 Sum_probs=65.9
Q ss_pred CCccEEEccCCCCCCCcCCCCCCCCCEEeCcCCCCcc-ccccccCCCCCcEEEcCCCCCCCcc---cccCCCCCcEEECC
Q 035577 419 RGLHILNLSKNNISTIEGLRELTRLRVLDLSYNRILR-IGHGLASCSSLKELYLAGNKISEVE---GLHRLLKLTVLDLR 494 (662)
Q Consensus 419 ~~L~~L~Ls~N~L~~lp~l~~L~~L~~LdLs~N~Ls~-Lp~~l~~L~~L~~L~Ls~N~L~~l~---~l~~L~~L~~LdLs 494 (662)
++|++|+|++|.|+.++.+..+++|++|+|++|.|+. +|..+..+++|++|+|++|.|++++ .+..+++|+.|+|+
T Consensus 49 ~~L~~L~l~~n~l~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~l~~l~~L~~L~l~ 128 (168)
T 2ell_A 49 VNLEFLSLINVGLISVSNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHLNLSGNKLKDISTLEPLKKLECLKSLDLF 128 (168)
T ss_dssp GGCCEEEEESSCCCCCSSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCEEECBSSSCCSSGGGGGGSSCSCCCEEECC
T ss_pred CCCCEEeCcCCCCCChhhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCEEeccCCccCcchhHHHHhcCCCCCEEEee
Confidence 3445555555555544455666667777777777665 4544555677777777777776652 45666677777777
Q ss_pred CCccCccccch-HhhhcCCCCcEEEccCCCCCC
Q 035577 495 FNKISTAKCLG-QLAANYNSLQAISLEGNPAQK 526 (662)
Q Consensus 495 ~N~Ls~l~~l~-~~l~~l~~L~~L~Ls~N~l~~ 526 (662)
+|.|+.++.+. ..+..+++|+.|++++|.+..
T Consensus 129 ~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~~~~ 161 (168)
T 2ell_A 129 NCEVTNLNDYRESVFKLLPQLTYLDGYDREDQE 161 (168)
T ss_dssp SSGGGTSTTHHHHHHTTCSSCCEETTEETTSCB
T ss_pred CCcCcchHHHHHHHHHhCccCcEecCCCCChhh
Confidence 77766653111 355666777777777766543
No 115
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.51 E-value=1.3e-14 Score=139.29 Aligned_cols=138 Identities=24% Similarity=0.303 Sum_probs=118.4
Q ss_pred CCCccEEEccCCCCCCCcCCCCCC-CCCEEeCcCCCCccccccccCCCCCcEEEcCCCCCCCcc-c-ccCCCCCcEEECC
Q 035577 418 PRGLHILNLSKNNISTIEGLRELT-RLRVLDLSYNRILRIGHGLASCSSLKELYLAGNKISEVE-G-LHRLLKLTVLDLR 494 (662)
Q Consensus 418 ~~~L~~L~Ls~N~L~~lp~l~~L~-~L~~LdLs~N~Ls~Lp~~l~~L~~L~~L~Ls~N~L~~l~-~-l~~L~~L~~LdLs 494 (662)
+.+|++|+|++|.|+.++.+..+. +|++|+|++|.|+.+ ..|..+++|++|+|++|.|+.++ . +..+++|+.|+|+
T Consensus 18 ~~~L~~L~l~~n~l~~i~~~~~~~~~L~~L~Ls~N~l~~~-~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~ 96 (176)
T 1a9n_A 18 AVRDRELDLRGYKIPVIENLGATLDQFDAIDFSDNEIRKL-DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTELILT 96 (176)
T ss_dssp TTSCEEEECTTSCCCSCCCGGGGTTCCSEEECCSSCCCEE-CCCCCCSSCCEEECCSSCCCEECSCHHHHCTTCCEEECC
T ss_pred cCCceEEEeeCCCCchhHHhhhcCCCCCEEECCCCCCCcc-cccccCCCCCEEECCCCcccccCcchhhcCCCCCEEECC
Confidence 378999999999999998777766 999999999999998 57999999999999999999986 3 5899999999999
Q ss_pred CCccCccccchHhhhcCCCCcEEEccCCCCCCCCChHHHHHHHHhhCccCceeecCCCCCCccccc
Q 035577 495 FNKISTAKCLGQLAANYNSLQAISLEGNPAQKNVGDEQLKKNLQSLLPHLVYFNWQPMKASTLKDA 560 (662)
Q Consensus 495 ~N~Ls~l~~l~~~l~~l~~L~~L~Ls~N~l~~~~~~~~l~~~l~~~l~~L~~Ld~~~~~~~~l~~~ 560 (662)
+|.|+.++.+ ..+..+++|+.|+|++|+++... .++..+...+++|++||+..+...++..+
T Consensus 97 ~N~i~~~~~~-~~l~~l~~L~~L~l~~N~i~~~~---~~~~~~~~~l~~L~~Ld~~~n~~~~~~~~ 158 (176)
T 1a9n_A 97 NNSLVELGDL-DPLASLKSLTYLCILRNPVTNKK---HYRLYVIYKVPQVRVLDFQKVKLKERQEA 158 (176)
T ss_dssp SCCCCCGGGG-GGGGGCTTCCEEECCSSGGGGST---THHHHHHHHCTTCSEETTEECCHHHHHHH
T ss_pred CCcCCcchhh-HhhhcCCCCCEEEecCCCCCCcH---hHHHHHHHHCCccceeCCCcCCHHHHHHH
Confidence 9999987532 25688999999999999997532 24556788999999999999987665544
No 116
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.51 E-value=8.2e-15 Score=156.69 Aligned_cols=206 Identities=23% Similarity=0.236 Sum_probs=154.8
Q ss_pred CCCCCceeeCCccccchh--hhHHHhhhccCCccEEEccCCCCCCCCC--CCCC-----CCCCEEEccCCCCcccCCCcC
Q 035577 347 LNGSTAVKVDGKVTAGME--AVTKYISSLSASATTVQLSNHGLVVIPF--LSAF-----VSLKVLNLSGNAIVRITAGAL 417 (662)
Q Consensus 347 l~~L~~L~l~~~~~~~l~--~l~~~l~~l~~sL~~L~Ls~N~L~~lp~--l~~L-----~~L~~L~Ls~N~L~~l~~~~~ 417 (662)
..+|+.|+++++...... .+...+..++..|+.|+|++|.|+.... +..+ ++|++|+|++|.|+......+
T Consensus 21 ~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l 100 (362)
T 3goz_A 21 PHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANVTSLNLSGNFLSYKSSDEL 100 (362)
T ss_dssp CTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHH
T ss_pred CCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCCccEEECcCCcCChHHHHHH
Confidence 355888888886655433 3446677777569999999999987642 4443 899999999999987654321
Q ss_pred -------CCCccEEEccCCCCCCCcC------CCC-CCCCCEEeCcCCCCc-----cccccccCCC-CCcEEEcCCCCCC
Q 035577 418 -------PRGLHILNLSKNNISTIEG------LRE-LTRLRVLDLSYNRIL-----RIGHGLASCS-SLKELYLAGNKIS 477 (662)
Q Consensus 418 -------~~~L~~L~Ls~N~L~~lp~------l~~-L~~L~~LdLs~N~Ls-----~Lp~~l~~L~-~L~~L~Ls~N~L~ 477 (662)
+++|++|+|++|.|+..+. +.. ..+|++|+|++|.|+ .++..+..++ +|++|+|++|.|+
T Consensus 101 ~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~ 180 (362)
T 3goz_A 101 VKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQILAAIPANVNSLNLRGNNLA 180 (362)
T ss_dssp HHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGG
T ss_pred HHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHHHHhcCCccccEeeecCCCCc
Confidence 1589999999999987641 444 369999999999998 4555566666 9999999999998
Q ss_pred Ccc------cccCC-CCCcEEECCCCccCcc--ccchHhhhc-CCCCcEEEccCCCCCCCCChHHHHHHHHhhCccCcee
Q 035577 478 EVE------GLHRL-LKLTVLDLRFNKISTA--KCLGQLAAN-YNSLQAISLEGNPAQKNVGDEQLKKNLQSLLPHLVYF 547 (662)
Q Consensus 478 ~l~------~l~~L-~~L~~LdLs~N~Ls~l--~~l~~~l~~-l~~L~~L~Ls~N~l~~~~~~~~l~~~l~~~l~~L~~L 547 (662)
+.. .+..+ ++|+.|+|++|.|+.. ..++..+.. .++|+.|+|++|.+.... ...+ ..+...+++|+.|
T Consensus 181 ~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~-~~~l-~~~~~~l~~L~~L 258 (362)
T 3goz_A 181 SKNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLHGPS-LENL-KLLKDSLKHLQTV 258 (362)
T ss_dssp GSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHHSCTTCCEEECCSSCCCCCC-HHHH-HHTTTTTTTCSEE
T ss_pred hhhHHHHHHHHHhCCCCCCEEECCCCCCChhHHHHHHHHHhcCCCCceEEECcCCCCCcHH-HHHH-HHHHhcCCCccEE
Confidence 763 34555 5999999999999973 223555555 459999999999998642 2222 3455678999999
Q ss_pred ecCCCCC
Q 035577 548 NWQPMKA 554 (662)
Q Consensus 548 d~~~~~~ 554 (662)
++..+.+
T Consensus 259 ~L~~n~l 265 (362)
T 3goz_A 259 YLDYDIV 265 (362)
T ss_dssp EEEHHHH
T ss_pred EeccCCc
Confidence 9998873
No 117
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.51 E-value=5.2e-14 Score=130.84 Aligned_cols=100 Identities=27% Similarity=0.362 Sum_probs=50.9
Q ss_pred ccEEEccCCCCCCCcCCCCCCCCCEEeCcCCCCcc-ccccccCCCCCcEEEcCCCCCCCc---ccccCCCCCcEEECCCC
Q 035577 421 LHILNLSKNNISTIEGLRELTRLRVLDLSYNRILR-IGHGLASCSSLKELYLAGNKISEV---EGLHRLLKLTVLDLRFN 496 (662)
Q Consensus 421 L~~L~Ls~N~L~~lp~l~~L~~L~~LdLs~N~Ls~-Lp~~l~~L~~L~~L~Ls~N~L~~l---~~l~~L~~L~~LdLs~N 496 (662)
|++|+|++|.|+.++.+..+++|++|+|++|.|+. +|..+..+++|++|++++|.|+++ ..+..+++|+.|++++|
T Consensus 44 L~~L~l~~n~l~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~ls~N~i~~~~~~~~~~~l~~L~~L~l~~N 123 (149)
T 2je0_A 44 LEFLSTINVGLTSIANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHLNLSGNKIKDLSTIEPLKKLENLKSLDLFNC 123 (149)
T ss_dssp CCEEECTTSCCCCCTTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEEECTTSCCCSHHHHGGGGGCTTCCEEECTTC
T ss_pred CcEEECcCCCCCCchhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEEECCCCcCCChHHHHHHhhCCCCCEEeCcCC
Confidence 33333333333333344555556666666666554 444444555666666666655554 24555555566666665
Q ss_pred ccCccccc-hHhhhcCCCCcEEEcc
Q 035577 497 KISTAKCL-GQLAANYNSLQAISLE 520 (662)
Q Consensus 497 ~Ls~l~~l-~~~l~~l~~L~~L~Ls 520 (662)
.|++++.+ ...+..+++|+.|+++
T Consensus 124 ~l~~~~~~~~~~~~~l~~L~~L~l~ 148 (149)
T 2je0_A 124 EVTNLNDYRENVFKLLPQLTYLDGY 148 (149)
T ss_dssp GGGGSTTHHHHHHHHCTTCCEETTB
T ss_pred cccchHHHHHHHHHHCCCcccccCC
Confidence 55554311 1244555555555554
No 118
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.51 E-value=3.4e-14 Score=134.78 Aligned_cols=131 Identities=25% Similarity=0.237 Sum_probs=113.4
Q ss_pred hccCCccEEEccCCCCC--CCCC-CCCCCCCCEEEccCCCCcccCCCcCCCCccEEEccCCCCCC-CcC-CCCCCCCCEE
Q 035577 372 SLSASATTVQLSNHGLV--VIPF-LSAFVSLKVLNLSGNAIVRITAGALPRGLHILNLSKNNIST-IEG-LRELTRLRVL 446 (662)
Q Consensus 372 ~l~~sL~~L~Ls~N~L~--~lp~-l~~L~~L~~L~Ls~N~L~~l~~~~~~~~L~~L~Ls~N~L~~-lp~-l~~L~~L~~L 446 (662)
..+..++.|+|++|.|+ .+|. +..+++|++|+|++|.|+.+......++|++|+|++|.|+. +|. +..+++|++|
T Consensus 21 ~~~~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L 100 (168)
T 2ell_A 21 RTPAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISVSNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHL 100 (168)
T ss_dssp SCTTSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCCSSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCEE
T ss_pred CCcccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCChhhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCEE
Confidence 44566999999999998 8887 78999999999999999988222222899999999999998 664 4569999999
Q ss_pred eCcCCCCcccc--ccccCCCCCcEEEcCCCCCCCcc-----cccCCCCCcEEECCCCccCccc
Q 035577 447 DLSYNRILRIG--HGLASCSSLKELYLAGNKISEVE-----GLHRLLKLTVLDLRFNKISTAK 502 (662)
Q Consensus 447 dLs~N~Ls~Lp--~~l~~L~~L~~L~Ls~N~L~~l~-----~l~~L~~L~~LdLs~N~Ls~l~ 502 (662)
+|++|.|+.+| ..+..+++|+.|+|++|.|+.++ .+..+++|+.|++++|.+..++
T Consensus 101 ~Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~ 163 (168)
T 2ell_A 101 NLSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDREDQEAP 163 (168)
T ss_dssp ECBSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEETTSCBCC
T ss_pred eccCCccCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCCChhhcc
Confidence 99999999887 57999999999999999999885 4788999999999999998774
No 119
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.51 E-value=1.4e-16 Score=155.88 Aligned_cols=140 Identities=28% Similarity=0.422 Sum_probs=114.8
Q ss_pred CCccEEEccCCCCCCCcCCCCCCCCCEEeCcCCCCccccccccCCCCCcEEEcCCCCCCCcccccCCCCCcEEECCCCcc
Q 035577 419 RGLHILNLSKNNISTIEGLRELTRLRVLDLSYNRILRIGHGLASCSSLKELYLAGNKISEVEGLHRLLKLTVLDLRFNKI 498 (662)
Q Consensus 419 ~~L~~L~Ls~N~L~~lp~l~~L~~L~~LdLs~N~Ls~Lp~~l~~L~~L~~L~Ls~N~L~~l~~l~~L~~L~~LdLs~N~L 498 (662)
++|++|+|++|.|+.+|.+..+++|++|++++|.|+.+|..+..+++|+.|+|++|+|++++.+..+++|+.|+|++|.|
T Consensus 48 ~~L~~L~ls~n~l~~l~~~~~l~~L~~L~l~~n~l~~l~~~~~~~~~L~~L~L~~N~l~~l~~~~~l~~L~~L~l~~N~i 127 (198)
T 1ds9_A 48 KACKHLALSTNNIEKISSLSGMENLRILSLGRNLIKKIENLDAVADTLEELWISYNQIASLSGIEKLVNLRVLYMSNNKI 127 (198)
T ss_dssp TTCSEEECSEEEESCCCCHHHHTTCCEEEEEEEEECSCSSHHHHHHHCSEEEEEEEECCCHHHHHHHHHSSEEEESEEEC
T ss_pred CCCCEEECCCCCCccccccccCCCCCEEECCCCCcccccchhhcCCcCCEEECcCCcCCcCCccccCCCCCEEECCCCcC
Confidence 56777777777777777777888899999999999988877777889999999999999988888889999999999999
Q ss_pred CccccchHhhhcCCCCcEEEccCCCCCCCCCh----HHHHHHHHhhCccCceeecCCCCCCcccc
Q 035577 499 STAKCLGQLAANYNSLQAISLEGNPAQKNVGD----EQLKKNLQSLLPHLVYFNWQPMKASTLKD 559 (662)
Q Consensus 499 s~l~~l~~~l~~l~~L~~L~Ls~N~l~~~~~~----~~l~~~l~~~l~~L~~Ld~~~~~~~~l~~ 559 (662)
+.++.+ ..+..+++|++|++++|++.+.++. ..+...+...+++|++||...+...++..
T Consensus 128 ~~~~~~-~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~~l~~L~~Ld~~~i~~~e~~~ 191 (198)
T 1ds9_A 128 TNWGEI-DKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKKLDGMPVDVDEREQ 191 (198)
T ss_dssp CCHHHH-HHHTTTTTCSEEEECSCHHHHHHHTTTTHHHHHHHHHHHCSSCSEECCGGGTTTTTTH
T ss_pred CchhHH-HHHhcCCCCCEEEecCCccccccccccchHHHHHHHHHhCCCcEEECCcccCHHHHHH
Confidence 987532 4568899999999999999876655 66777888899999999977666555443
No 120
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.49 E-value=8.2e-15 Score=171.46 Aligned_cols=108 Identities=29% Similarity=0.379 Sum_probs=53.5
Q ss_pred CCCCCCCCEEEccCCCCcccCCCcCC-CCccEEEccCCCCCCCc-CCCCCCCCCEEeCcCCCCccccccccCCCCCcEEE
Q 035577 393 LSAFVSLKVLNLSGNAIVRITAGALP-RGLHILNLSKNNISTIE-GLRELTRLRVLDLSYNRILRIGHGLASCSSLKELY 470 (662)
Q Consensus 393 l~~L~~L~~L~Ls~N~L~~l~~~~~~-~~L~~L~Ls~N~L~~lp-~l~~L~~L~~LdLs~N~Ls~Lp~~l~~L~~L~~L~ 470 (662)
+..+..|+.|+|++|.|..++...+. ++|++|+|++|.|+.+| .|..|++|++|+|++|.|+.||..|+.|++|++|+
T Consensus 220 ~~~l~~L~~L~Ls~n~l~~l~~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~ 299 (727)
T 4b8c_D 220 KYDDQLWHALDLSNLQIFNISANIFKYDFLTRLYLNGNSLTELPAEIKNLSNLRVLDLSHNRLTSLPAELGSCFQLKYFY 299 (727)
T ss_dssp --CCCCCCEEECTTSCCSCCCGGGGGCCSCSCCBCTTSCCSCCCGGGGGGTTCCEEECTTSCCSSCCSSGGGGTTCSEEE
T ss_pred hccCCCCcEEECCCCCCCCCChhhcCCCCCCEEEeeCCcCcccChhhhCCCCCCEEeCcCCcCCccChhhcCCCCCCEEE
Confidence 44445555555555555444443333 44555555555555444 34455555555555555555554555555555555
Q ss_pred cCCCCCCCcc-cccCCCCCcEEECCCCccCc
Q 035577 471 LAGNKISEVE-GLHRLLKLTVLDLRFNKIST 500 (662)
Q Consensus 471 Ls~N~L~~l~-~l~~L~~L~~LdLs~N~Ls~ 500 (662)
|++|.|+.+| .|..+++|+.|+|++|.|++
T Consensus 300 L~~N~l~~lp~~~~~l~~L~~L~L~~N~l~~ 330 (727)
T 4b8c_D 300 FFDNMVTTLPWEFGNLCNLQFLGVEGNPLEK 330 (727)
T ss_dssp CCSSCCCCCCSSTTSCTTCCCEECTTSCCCS
T ss_pred CCCCCCCccChhhhcCCCccEEeCCCCccCC
Confidence 5555555443 34455555555555555554
No 121
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.49 E-value=6.7e-14 Score=149.01 Aligned_cols=187 Identities=15% Similarity=0.149 Sum_probs=140.5
Q ss_pred CCCCccCCccc-CCCCCceeeCCccccchhhhHHHhhhccCCccEEEccCCCCC-CCCC--CCCCCCCCE-EEccCCCCc
Q 035577 336 SNDQVKRDPKV-LNGSTAVKVDGKVTAGMEAVTKYISSLSASATTVQLSNHGLV-VIPF--LSAFVSLKV-LNLSGNAIV 410 (662)
Q Consensus 336 s~n~L~~~p~~-l~~L~~L~l~~~~~~~l~~l~~~l~~l~~sL~~L~Ls~N~L~-~lp~--l~~L~~L~~-L~Ls~N~L~ 410 (662)
+.+.+..+|.. ..+++.|++.++.+..+.. ..+..++. |++|+|++|.+. .+|. |.++++|.. +.+.+|+|+
T Consensus 17 ~~~~Lt~iP~~l~~~l~~L~Ls~N~i~~i~~--~~f~~l~~-L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~N~l~ 93 (350)
T 4ay9_X 17 QESKVTEIPSDLPRNAIELRFVLTKLRVIQK--GAFSGFGD-LEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLL 93 (350)
T ss_dssp ESTTCCSCCTTCCTTCSEEEEESCCCSEECT--TSSTTCTT-CCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEETTCC
T ss_pred cCCCCCccCcCcCCCCCEEEccCCcCCCcCH--HHHcCCCC-CCEEECcCCCCCCccChhHhhcchhhhhhhcccCCccc
Confidence 34445555543 3678999998876655432 23445554 899999999875 4664 788888775 666779999
Q ss_pred ccCCCcCC--CCccEEEccCCCCCCCcC--CCCCCCCCEEeCcC-CCCcccccc-ccCC-CCCcEEEcCCCCCCCcc-cc
Q 035577 411 RITAGALP--RGLHILNLSKNNISTIEG--LRELTRLRVLDLSY-NRILRIGHG-LASC-SSLKELYLAGNKISEVE-GL 482 (662)
Q Consensus 411 ~l~~~~~~--~~L~~L~Ls~N~L~~lp~--l~~L~~L~~LdLs~-N~Ls~Lp~~-l~~L-~~L~~L~Ls~N~L~~l~-~l 482 (662)
.++++.|. ++|++|++++|+|+.++. +....++..|++.. |.+..+|.. |..+ ..|+.|+|++|+|+.++ ..
T Consensus 94 ~l~~~~f~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~i~~i~~~~ 173 (350)
T 4ay9_X 94 YINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQEIHNSA 173 (350)
T ss_dssp EECTTSBCCCTTCCEEEEEEECCSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCCEECTTS
T ss_pred ccCchhhhhccccccccccccccccCCchhhcccchhhhhhhccccccccccccchhhcchhhhhhccccccccCCChhh
Confidence 99888776 789999999999998864 45566778888865 678888764 5555 46889999999999885 45
Q ss_pred cCCCCCcEEECC-CCccCccccchHhhhcCCCCcEEEccCCCCCCC
Q 035577 483 HRLLKLTVLDLR-FNKISTAKCLGQLAANYNSLQAISLEGNPAQKN 527 (662)
Q Consensus 483 ~~L~~L~~LdLs-~N~Ls~l~~l~~~l~~l~~L~~L~Ls~N~l~~~ 527 (662)
....+|+.|++. +|.++.++ +..|..+++|+.|+|++|.|+..
T Consensus 174 f~~~~L~~l~l~~~n~l~~i~--~~~f~~l~~L~~LdLs~N~l~~l 217 (350)
T 4ay9_X 174 FNGTQLDELNLSDNNNLEELP--NDVFHGASGPVILDISRTRIHSL 217 (350)
T ss_dssp STTEEEEEEECTTCTTCCCCC--TTTTTTEECCSEEECTTSCCCCC
T ss_pred ccccchhHHhhccCCcccCCC--HHHhccCcccchhhcCCCCcCcc
Confidence 566789999997 57888885 56778899999999999999864
No 122
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.48 E-value=3e-14 Score=149.47 Aligned_cols=172 Identities=19% Similarity=0.180 Sum_probs=129.2
Q ss_pred CCCCCceeeCCccccchhhhHHHhhhccCCccEEEccCCCCC-CCCC-CCCCCCCCEEEccCC-CCcc--cCCCc-CCCC
Q 035577 347 LNGSTAVKVDGKVTAGMEAVTKYISSLSASATTVQLSNHGLV-VIPF-LSAFVSLKVLNLSGN-AIVR--ITAGA-LPRG 420 (662)
Q Consensus 347 l~~L~~L~l~~~~~~~l~~l~~~l~~l~~sL~~L~Ls~N~L~-~lp~-l~~L~~L~~L~Ls~N-~L~~--l~~~~-~~~~ 420 (662)
+.+|+.|++.++.... ..++..+..++. |+.|+|++|.++ .++. +..+++|++|+|++| .++. ++... ..++
T Consensus 92 ~~~L~~L~L~~~~l~~-~~~~~~~~~~~~-L~~L~L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~ 169 (336)
T 2ast_B 92 PFRVQHMDLSNSVIEV-STLHGILSQCSK-LQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSR 169 (336)
T ss_dssp CBCCCEEECTTCEECH-HHHHHHHTTBCC-CSEEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTT
T ss_pred CCCCCEEEccCCCcCH-HHHHHHHhhCCC-CCEEeCcCcccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCC
Confidence 5678888888765321 224455666664 999999999887 3343 788999999999999 6763 22211 1278
Q ss_pred ccEEEccCC-CCCC--Cc-CCCCCC-CCCEEeCcCCC--C--ccccccccCCCCCcEEEcCCCC-CCC--cccccCCCCC
Q 035577 421 LHILNLSKN-NIST--IE-GLRELT-RLRVLDLSYNR--I--LRIGHGLASCSSLKELYLAGNK-ISE--VEGLHRLLKL 488 (662)
Q Consensus 421 L~~L~Ls~N-~L~~--lp-~l~~L~-~L~~LdLs~N~--L--s~Lp~~l~~L~~L~~L~Ls~N~-L~~--l~~l~~L~~L 488 (662)
|++|+|++| .++. ++ .+..++ +|++|+|++|. + ..+|..+..+++|+.|+|++|. +++ ++.+..+++|
T Consensus 170 L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L 249 (336)
T 2ast_B 170 LDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYL 249 (336)
T ss_dssp CCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTC
T ss_pred CCEEcCCCCCCcChHHHHHHHHhcccCCCEEEeCCCcccCCHHHHHHHHhhCCCCCEEeCCCCCcCCHHHHHHHhCCCCC
Confidence 999999999 8885 34 467788 99999999994 4 3677778889999999999998 654 3578889999
Q ss_pred cEEECCCCc-cCccccchHhhhcCCCCcEEEccCC
Q 035577 489 TVLDLRFNK-ISTAKCLGQLAANYNSLQAISLEGN 522 (662)
Q Consensus 489 ~~LdLs~N~-Ls~l~~l~~~l~~l~~L~~L~Ls~N 522 (662)
+.|+|++|. +.... ...+..+++|+.|+|++|
T Consensus 250 ~~L~l~~~~~~~~~~--~~~l~~~~~L~~L~l~~~ 282 (336)
T 2ast_B 250 QHLSLSRCYDIIPET--LLELGEIPTLKTLQVFGI 282 (336)
T ss_dssp CEEECTTCTTCCGGG--GGGGGGCTTCCEEECTTS
T ss_pred CEeeCCCCCCCCHHH--HHHHhcCCCCCEEeccCc
Confidence 999999995 33221 234678999999999998
No 123
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.47 E-value=3.8e-13 Score=131.56 Aligned_cols=122 Identities=34% Similarity=0.445 Sum_probs=108.0
Q ss_pred ccEEEccCCCCCCCCCCCCCCCCCEEEccCCCCcccCCCcCC--CCccEEEccCCCCCCCc--CCCCCCCCCEEeCcCCC
Q 035577 377 ATTVQLSNHGLVVIPFLSAFVSLKVLNLSGNAIVRITAGALP--RGLHILNLSKNNISTIE--GLRELTRLRVLDLSYNR 452 (662)
Q Consensus 377 L~~L~Ls~N~L~~lp~l~~L~~L~~L~Ls~N~L~~l~~~~~~--~~L~~L~Ls~N~L~~lp--~l~~L~~L~~LdLs~N~ 452 (662)
-+.+++++|+|+.+|. .-.++|++|+|++|.|+.++ ..|. ++|++|+|++|.|+.++ .|..+++|++|+|++|.
T Consensus 12 ~~~l~~~~~~l~~ip~-~~~~~l~~L~L~~n~i~~ip-~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~ 89 (193)
T 2wfh_A 12 DTVVRCSNKGLKVLPK-GIPRDVTELYLDGNQFTLVP-KELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNR 89 (193)
T ss_dssp TTEEECTTSCCSSCCS-CCCTTCCEEECCSSCCCSCC-GGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred CCEEEcCCCCCCcCCC-CCCCCCCEEECCCCcCchhH-HHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCCc
Confidence 3589999999999996 12368999999999999888 4444 89999999999999986 59999999999999999
Q ss_pred Ccccccc-ccCCCCCcEEEcCCCCCCCcc--cccCCCCCcEEECCCCccCc
Q 035577 453 ILRIGHG-LASCSSLKELYLAGNKISEVE--GLHRLLKLTVLDLRFNKIST 500 (662)
Q Consensus 453 Ls~Lp~~-l~~L~~L~~L~Ls~N~L~~l~--~l~~L~~L~~LdLs~N~Ls~ 500 (662)
|+.++.. |..+++|+.|+|++|.|+.++ .+..+++|+.|+|++|.+.-
T Consensus 90 l~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~C 140 (193)
T 2wfh_A 90 LRCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGANPLYC 140 (193)
T ss_dssp CCBCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCEEC
T ss_pred cCEeCHHHhCCCCCCCEEECCCCCCCeeChhhhhcCccccEEEeCCCCeec
Confidence 9988764 999999999999999999985 48889999999999999864
No 124
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.46 E-value=7.3e-13 Score=126.80 Aligned_cols=124 Identities=27% Similarity=0.395 Sum_probs=110.3
Q ss_pred ccEEEccCCCCCCCCCCCCCCCCCEEEccCCCCcccCCCcCC--CCccEEEccCCCCCCCcC--CCCCCCCCEEeCcCCC
Q 035577 377 ATTVQLSNHGLVVIPFLSAFVSLKVLNLSGNAIVRITAGALP--RGLHILNLSKNNISTIEG--LRELTRLRVLDLSYNR 452 (662)
Q Consensus 377 L~~L~Ls~N~L~~lp~l~~L~~L~~L~Ls~N~L~~l~~~~~~--~~L~~L~Ls~N~L~~lp~--l~~L~~L~~LdLs~N~ 452 (662)
.+.+++++++++.+|. ...++|++|+|++|.|+.++...+. ++|++|+|++|.|+.++. +..+++|++|+|++|.
T Consensus 9 ~~~l~~~~~~l~~~p~-~~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~ 87 (177)
T 2o6r_A 9 GTEIRCNSKGLTSVPT-GIPSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENK 87 (177)
T ss_dssp TTEEECCSSCCSSCCT-TCCTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred CCEEEecCCCCccCCC-CCCCCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCCCC
Confidence 5689999999999985 3347999999999999999877665 899999999999999873 7899999999999999
Q ss_pred Ccccccc-ccCCCCCcEEEcCCCCCCCcc--cccCCCCCcEEECCCCccCcc
Q 035577 453 ILRIGHG-LASCSSLKELYLAGNKISEVE--GLHRLLKLTVLDLRFNKISTA 501 (662)
Q Consensus 453 Ls~Lp~~-l~~L~~L~~L~Ls~N~L~~l~--~l~~L~~L~~LdLs~N~Ls~l 501 (662)
|+.+|.. +..+++|+.|+|++|.|+.++ .+..+++|+.|+|++|.+...
T Consensus 88 l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~ 139 (177)
T 2o6r_A 88 LQSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCS 139 (177)
T ss_dssp CCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCC
T ss_pred ccccCHHHhhCCcccCEEECcCCcceEeCHHHhcCCcccCEEEecCCCeecc
Confidence 9988876 789999999999999999986 367899999999999999864
No 125
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.46 E-value=3e-15 Score=170.37 Aligned_cols=121 Identities=25% Similarity=0.309 Sum_probs=87.1
Q ss_pred CCCEEEccCCCCcccCCCcCCCCccEEEccCCCCCCCc-CCCCCCCCCEEeCcCCCCccccccccCCCCCcEEEcCCCCC
Q 035577 398 SLKVLNLSGNAIVRITAGALPRGLHILNLSKNNISTIE-GLRELTRLRVLDLSYNRILRIGHGLASCSSLKELYLAGNKI 476 (662)
Q Consensus 398 ~L~~L~Ls~N~L~~l~~~~~~~~L~~L~Ls~N~L~~lp-~l~~L~~L~~LdLs~N~Ls~Lp~~l~~L~~L~~L~Ls~N~L 476 (662)
.|+.|+|++|.|+.+|.....++|+.|+|++|.|+.+| .++.+++|++|+|++|.|+.+| .++.+++|+.|+|++|+|
T Consensus 442 ~L~~L~Ls~n~l~~lp~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N~l~~lp-~l~~l~~L~~L~Ls~N~l 520 (567)
T 1dce_A 442 DVRVLHLAHKDLTVLCHLEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDNALENVD-GVANLPRLQELLLCNNRL 520 (567)
T ss_dssp TCSEEECTTSCCSSCCCGGGGTTCCEEECCSSCCCCCCGGGGGCTTCCEEECCSSCCCCCG-GGTTCSSCCEEECCSSCC
T ss_pred CceEEEecCCCCCCCcCccccccCcEeecCcccccccchhhhcCCCCCEEECCCCCCCCCc-ccCCCCCCcEEECCCCCC
Confidence 36667777777766654111166777777777777665 5777888888888888888877 778888888888888888
Q ss_pred CCc--c-cccCCCCCcEEECCCCccCcccc-chHhhhcCCCCcEEEc
Q 035577 477 SEV--E-GLHRLLKLTVLDLRFNKISTAKC-LGQLAANYNSLQAISL 519 (662)
Q Consensus 477 ~~l--~-~l~~L~~L~~LdLs~N~Ls~l~~-l~~~l~~l~~L~~L~L 519 (662)
+++ | .+..+++|+.|+|++|.|++++. ....+..+++|+.|++
T Consensus 521 ~~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~l~~~lp~L~~L~l 567 (567)
T 1dce_A 521 QQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSVSSILT 567 (567)
T ss_dssp CSSSTTGGGGGCTTCCEEECTTSGGGGSSSCTTHHHHHCTTCSEEEC
T ss_pred CCCCCcHHHhcCCCCCEEEecCCcCCCCccHHHHHHHHCcccCccCC
Confidence 876 4 67778888888888888877642 3345556788888864
No 126
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.46 E-value=5.2e-13 Score=130.20 Aligned_cols=123 Identities=29% Similarity=0.374 Sum_probs=109.0
Q ss_pred ccEEEccCCCCCCCCC-CCCCCCCCEEEccCCCCcccCCC-cCC--CCccEEEccCCCCCCC-c-CCCCCCCCCEEeCcC
Q 035577 377 ATTVQLSNHGLVVIPF-LSAFVSLKVLNLSGNAIVRITAG-ALP--RGLHILNLSKNNISTI-E-GLRELTRLRVLDLSY 450 (662)
Q Consensus 377 L~~L~Ls~N~L~~lp~-l~~L~~L~~L~Ls~N~L~~l~~~-~~~--~~L~~L~Ls~N~L~~l-p-~l~~L~~L~~LdLs~ 450 (662)
.+.|++++|+|+.+|. +. .+|++|+|++|.|+.++.. .+. ++|++|+|++|.|+.+ + .|..+++|++|+|++
T Consensus 10 ~~~l~~s~~~l~~ip~~~~--~~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~ 87 (192)
T 1w8a_A 10 GTTVDCTGRGLKEIPRDIP--LHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGE 87 (192)
T ss_dssp TTEEECTTSCCSSCCSCCC--TTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCS
T ss_pred CCEEEcCCCCcCcCccCCC--CCCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCC
Confidence 4689999999999997 43 3999999999999998864 343 8999999999999987 3 699999999999999
Q ss_pred CCCcccccc-ccCCCCCcEEEcCCCCCCCc-c-cccCCCCCcEEECCCCccCcc
Q 035577 451 NRILRIGHG-LASCSSLKELYLAGNKISEV-E-GLHRLLKLTVLDLRFNKISTA 501 (662)
Q Consensus 451 N~Ls~Lp~~-l~~L~~L~~L~Ls~N~L~~l-~-~l~~L~~L~~LdLs~N~Ls~l 501 (662)
|.|+.++.. |..+++|++|+|++|+|+++ + .+..+++|+.|+|++|.+...
T Consensus 88 N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~ 141 (192)
T 1w8a_A 88 NKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNCN 141 (192)
T ss_dssp CCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBCCS
T ss_pred CcCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCCCccCc
Confidence 999988765 88999999999999999987 3 688899999999999999864
No 127
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.46 E-value=1.3e-13 Score=128.14 Aligned_cols=122 Identities=24% Similarity=0.227 Sum_probs=105.6
Q ss_pred cCCccEEEccCCCCC--CCCC-CCCCCCCCEEEccCCCCcccCCCcCCCCccEEEccCCCCCC-CcC-CCCCCCCCEEeC
Q 035577 374 SASATTVQLSNHGLV--VIPF-LSAFVSLKVLNLSGNAIVRITAGALPRGLHILNLSKNNIST-IEG-LRELTRLRVLDL 448 (662)
Q Consensus 374 ~~sL~~L~Ls~N~L~--~lp~-l~~L~~L~~L~Ls~N~L~~l~~~~~~~~L~~L~Ls~N~L~~-lp~-l~~L~~L~~LdL 448 (662)
+..++.|++++|.++ .+|. +..+++|++|+|++|.|+.+......++|++|+|++|.|+. +|. +..+++|++|++
T Consensus 16 ~~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l 95 (149)
T 2je0_A 16 PSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSIANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHLNL 95 (149)
T ss_dssp GGGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCCTTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEEEC
T ss_pred CccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCchhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEEEC
Confidence 345999999999998 7886 79999999999999999988322222899999999999998 664 556999999999
Q ss_pred cCCCCcccc--ccccCCCCCcEEEcCCCCCCCccc-----ccCCCCCcEEECCC
Q 035577 449 SYNRILRIG--HGLASCSSLKELYLAGNKISEVEG-----LHRLLKLTVLDLRF 495 (662)
Q Consensus 449 s~N~Ls~Lp--~~l~~L~~L~~L~Ls~N~L~~l~~-----l~~L~~L~~LdLs~ 495 (662)
++|.|+.+| ..+..+++|++|++++|.|++++. +..+++|+.|++++
T Consensus 96 s~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~d 149 (149)
T 2je0_A 96 SGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDGYD 149 (149)
T ss_dssp TTSCCCSHHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETTBC
T ss_pred CCCcCCChHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCcccccCCC
Confidence 999999875 679999999999999999998854 78899999999864
No 128
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.43 E-value=8.2e-13 Score=126.46 Aligned_cols=115 Identities=22% Similarity=0.223 Sum_probs=85.3
Q ss_pred ccEEEccCCCCCCCcC-CCCCCCCCEEeCcCCCCcccc-ccccCCCCCcEEEcCCCCCCCcc--cccCCCCCcEEECCCC
Q 035577 421 LHILNLSKNNISTIEG-LRELTRLRVLDLSYNRILRIG-HGLASCSSLKELYLAGNKISEVE--GLHRLLKLTVLDLRFN 496 (662)
Q Consensus 421 L~~L~Ls~N~L~~lp~-l~~L~~L~~LdLs~N~Ls~Lp-~~l~~L~~L~~L~Ls~N~L~~l~--~l~~L~~L~~LdLs~N 496 (662)
.+.|++++|.|+.+|. + .++|++|+|++|.|+.++ ..|..+++|++|+|++|+|+.++ .|..+++|++|+|++|
T Consensus 11 ~~~l~~s~n~l~~ip~~~--~~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N 88 (170)
T 3g39_A 11 GTTVDCSGKSLASVPTGI--PTTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDN 88 (170)
T ss_dssp TTEEECTTSCCSSCCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred CCEEEeCCCCcCccCccC--CCCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCCC
Confidence 4556666666666652 3 266777777777777663 34777788888888888887774 3678888889999999
Q ss_pred ccCccccchHhhhcCCCCcEEEccCCCCCCCCC-hHHHHHHHHh
Q 035577 497 KISTAKCLGQLAANYNSLQAISLEGNPAQKNVG-DEQLKKNLQS 539 (662)
Q Consensus 497 ~Ls~l~~l~~~l~~l~~L~~L~Ls~N~l~~~~~-~~~l~~~l~~ 539 (662)
+|+.++ +..+..+++|+.|+|++|+|.|.|+ ..++..|+..
T Consensus 89 ~l~~~~--~~~~~~l~~L~~L~L~~N~~~c~c~~l~~l~~~l~~ 130 (170)
T 3g39_A 89 QLKSIP--RGAFDNLKSLTHIWLLNNPWDCACSDILYLSRWISQ 130 (170)
T ss_dssp CCCCCC--TTTTTTCTTCCEEECCSSCBCTTBGGGHHHHHHHHH
T ss_pred ccCEeC--HHHhcCCCCCCEEEeCCCCCCCCchhHHHHHHHHHh
Confidence 888875 5567889999999999999999997 4555555544
No 129
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.42 E-value=8.9e-13 Score=126.88 Aligned_cols=120 Identities=22% Similarity=0.274 Sum_probs=86.8
Q ss_pred cEEEccCCCCCCCcC-CCCCCCCCEEeCcCCCCcccc-ccccCCCCCcEEEcCCCCCCCcc--cccCCCCCcEEECCCCc
Q 035577 422 HILNLSKNNISTIEG-LRELTRLRVLDLSYNRILRIG-HGLASCSSLKELYLAGNKISEVE--GLHRLLKLTVLDLRFNK 497 (662)
Q Consensus 422 ~~L~Ls~N~L~~lp~-l~~L~~L~~LdLs~N~Ls~Lp-~~l~~L~~L~~L~Ls~N~L~~l~--~l~~L~~L~~LdLs~N~ 497 (662)
+.+++++|.|+.+|. +. ++|++|+|++|.|+.++ ..|..+++|++|+|++|+|+.++ .|..+++|+.|+|++|+
T Consensus 15 ~~l~~~~n~l~~iP~~~~--~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~ 92 (174)
T 2r9u_A 15 TLVNCQNIRLASVPAGIP--TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDNH 92 (174)
T ss_dssp SEEECCSSCCSSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred cEEEeCCCCCCccCCCcC--CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCCc
Confidence 456666666666653 32 66777777777777663 34777777888888888777775 25778888888888888
Q ss_pred cCccccchHhhhcCCCCcEEEccCCCCCCCCC-hHHHHHHHHhhCccCc
Q 035577 498 ISTAKCLGQLAANYNSLQAISLEGNPAQKNVG-DEQLKKNLQSLLPHLV 545 (662)
Q Consensus 498 Ls~l~~l~~~l~~l~~L~~L~Ls~N~l~~~~~-~~~l~~~l~~~l~~L~ 545 (662)
|+.++ +..+..+++|+.|+|++|+|.|.+. ..++..|+......+.
T Consensus 93 l~~l~--~~~~~~l~~L~~L~L~~N~~~c~~~~~~~l~~~~~~~~~~~~ 139 (174)
T 2r9u_A 93 LKSIP--RGAFDNLKSLTHIYLYNNPWDCECRDIMYLRNWVADHTSIVM 139 (174)
T ss_dssp CCCCC--TTTTTTCTTCSEEECCSSCBCTTBGGGHHHHHHHHHCGGGEE
T ss_pred cceeC--HHHhccccCCCEEEeCCCCcccccccHHHHHHHHHhcccccc
Confidence 88875 4557889999999999999999886 5556667765444433
No 130
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.41 E-value=1.3e-13 Score=161.36 Aligned_cols=150 Identities=22% Similarity=0.204 Sum_probs=100.6
Q ss_pred ccEEEccCCCCCCCCC-CCCCCCC-----CEEEccCCCCcccCCCcCC--CCccEEEccCCCCCCCc-CCCCCCCCCEEe
Q 035577 377 ATTVQLSNHGLVVIPF-LSAFVSL-----KVLNLSGNAIVRITAGALP--RGLHILNLSKNNISTIE-GLRELTRLRVLD 447 (662)
Q Consensus 377 L~~L~Ls~N~L~~lp~-l~~L~~L-----~~L~Ls~N~L~~l~~~~~~--~~L~~L~Ls~N~L~~lp-~l~~L~~L~~Ld 447 (662)
++.|.|.+|.+..++. +.....| ..+++..|.+. ++...+. ..|+.|+|++|.|..++ .+..+++|++|+
T Consensus 175 ~~~l~L~~n~~~~~~~~~l~~l~Ls~~~i~~~~~~~n~~~-~~~~~~~~l~~L~~L~Ls~n~l~~l~~~~~~l~~L~~L~ 253 (727)
T 4b8c_D 175 TPKIELFANGKDEANQALLQHKKLSQYSIDEDDDIENRMV-MPKDSKYDDQLWHALDLSNLQIFNISANIFKYDFLTRLY 253 (727)
T ss_dssp ------------------------------------------------CCCCCCEEECTTSCCSCCCGGGGGCCSCSCCB
T ss_pred cceEEeeCCCCCcchhhHhhcCccCcccccCcccccccee-cChhhhccCCCCcEEECCCCCCCCCChhhcCCCCCCEEE
Confidence 5677777777766553 2111112 22233344443 2333343 78999999999999987 677999999999
Q ss_pred CcCCCCccccccccCCCCCcEEEcCCCCCCCcc-cccCCCCCcEEECCCCccCccccchHhhhcCCCCcEEEccCCCCCC
Q 035577 448 LSYNRILRIGHGLASCSSLKELYLAGNKISEVE-GLHRLLKLTVLDLRFNKISTAKCLGQLAANYNSLQAISLEGNPAQK 526 (662)
Q Consensus 448 Ls~N~Ls~Lp~~l~~L~~L~~L~Ls~N~L~~l~-~l~~L~~L~~LdLs~N~Ls~l~~l~~~l~~l~~L~~L~Ls~N~l~~ 526 (662)
|++|.|+.||..|+.|++|++|+|++|.|+.+| .+..+++|+.|+|++|.|+.+ |..|..+++|+.|+|++|+|.+
T Consensus 254 Ls~N~l~~lp~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~L~~N~l~~l---p~~~~~l~~L~~L~L~~N~l~~ 330 (727)
T 4b8c_D 254 LNGNSLTELPAEIKNLSNLRVLDLSHNRLTSLPAELGSCFQLKYFYFFDNMVTTL---PWEFGNLCNLQFLGVEGNPLEK 330 (727)
T ss_dssp CTTSCCSCCCGGGGGGTTCCEEECTTSCCSSCCSSGGGGTTCSEEECCSSCCCCC---CSSTTSCTTCCCEECTTSCCCS
T ss_pred eeCCcCcccChhhhCCCCCCEEeCcCCcCCccChhhcCCCCCCEEECCCCCCCcc---ChhhhcCCCccEEeCCCCccCC
Confidence 999999999999999999999999999999986 789999999999999999977 5558999999999999999998
Q ss_pred CCCh
Q 035577 527 NVGD 530 (662)
Q Consensus 527 ~~~~ 530 (662)
.++.
T Consensus 331 ~~p~ 334 (727)
T 4b8c_D 331 QFLK 334 (727)
T ss_dssp HHHH
T ss_pred CChH
Confidence 6554
No 131
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.41 E-value=2.2e-13 Score=142.85 Aligned_cols=170 Identities=18% Similarity=0.113 Sum_probs=101.2
Q ss_pred ccEEEccCCCCCCCCC-CCCCCCCCEEEccCCCCcc--cCCCcC-CCCccEEEccCCCCCCC--cCCCCCCCCCEEeCcC
Q 035577 377 ATTVQLSNHGLVVIPF-LSAFVSLKVLNLSGNAIVR--ITAGAL-PRGLHILNLSKNNISTI--EGLRELTRLRVLDLSY 450 (662)
Q Consensus 377 L~~L~Ls~N~L~~lp~-l~~L~~L~~L~Ls~N~L~~--l~~~~~-~~~L~~L~Ls~N~L~~l--p~l~~L~~L~~LdLs~ 450 (662)
++.|++++|.+...+. +..+++|++|+|++|.++. ++.... .++|++|+|++|.++.. ..+..+++|++|+|++
T Consensus 72 l~~L~l~~n~l~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~L~~ 151 (336)
T 2ast_B 72 VIAFRCPRSFMDQPLAEHFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSG 151 (336)
T ss_dssp CSEEECTTCEECSCCCSCCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEECTT
T ss_pred ceEEEcCCccccccchhhccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEEeCcCcccCHHHHHHHhcCCCCCEEECCC
Confidence 6677777777665433 5566777777777776643 221111 15777777777766632 2455667777777777
Q ss_pred C-CCc--cccccccCCCCCcEEEcCCC-CCCC--cc-cccCCC-CCcEEECCCC--ccCccccchHhhhcCCCCcEEEcc
Q 035577 451 N-RIL--RIGHGLASCSSLKELYLAGN-KISE--VE-GLHRLL-KLTVLDLRFN--KISTAKCLGQLAANYNSLQAISLE 520 (662)
Q Consensus 451 N-~Ls--~Lp~~l~~L~~L~~L~Ls~N-~L~~--l~-~l~~L~-~L~~LdLs~N--~Ls~l~~l~~~l~~l~~L~~L~Ls 520 (662)
| .++ .++..+..+++|++|+|++| .+++ ++ .+..++ +|+.|+|++| .+++. .++..+..+++|+.|+|+
T Consensus 152 ~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l~~~~~~~~~~-~l~~~~~~~~~L~~L~l~ 230 (336)
T 2ast_B 152 CSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKS-DLSTLVRRCPNLVHLDLS 230 (336)
T ss_dssp CBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHH-HHHHHHHHCTTCSEEECT
T ss_pred CCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHHhcccCCCEEEeCCCcccCCHH-HHHHHHhhCCCCCEEeCC
Confidence 7 565 35555666777777777777 6664 22 355666 7777777777 34321 134555667777777777
Q ss_pred CCC-CCCCCChHHHHHHHHhhCccCceeecCCCC
Q 035577 521 GNP-AQKNVGDEQLKKNLQSLLPHLVYFNWQPMK 553 (662)
Q Consensus 521 ~N~-l~~~~~~~~l~~~l~~~l~~L~~Ld~~~~~ 553 (662)
+|. ++..... ....+++|++|++..+.
T Consensus 231 ~~~~l~~~~~~------~l~~l~~L~~L~l~~~~ 258 (336)
T 2ast_B 231 DSVMLKNDCFQ------EFFQLNYLQHLSLSRCY 258 (336)
T ss_dssp TCTTCCGGGGG------GGGGCTTCCEEECTTCT
T ss_pred CCCcCCHHHHH------HHhCCCCCCEeeCCCCC
Confidence 776 4332111 12445677777776663
No 132
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.37 E-value=1.5e-13 Score=155.18 Aligned_cols=132 Identities=18% Similarity=0.223 Sum_probs=84.5
Q ss_pred CCccEEEccCCCCCCC--cCCCC-CCCCCEEeCc----CCCCcccc------ccccCCCCCcEEEcCCCC--CCCc--cc
Q 035577 419 RGLHILNLSKNNISTI--EGLRE-LTRLRVLDLS----YNRILRIG------HGLASCSSLKELYLAGNK--ISEV--EG 481 (662)
Q Consensus 419 ~~L~~L~Ls~N~L~~l--p~l~~-L~~L~~LdLs----~N~Ls~Lp------~~l~~L~~L~~L~Ls~N~--L~~l--~~ 481 (662)
++|++|+++.|.++.. ..+.. +++|+.|+++ .|.++..| ..+..+++|+.|+|++|. +++. ..
T Consensus 378 ~~L~~L~l~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~n~l~~~p~~~~~~~~~~~~~~L~~L~L~~~~~~l~~~~~~~ 457 (592)
T 3ogk_B 378 QELEYMAVYVSDITNESLESIGTYLKNLCDFRLVLLDREERITDLPLDNGVRSLLIGCKKLRRFAFYLRQGGLTDLGLSY 457 (592)
T ss_dssp TTCSEEEEEESCCCHHHHHHHHHHCCSCCEEEEEECSCCSCCSSCCCHHHHHHHHHHCTTCCEEEEECCGGGCCHHHHHH
T ss_pred ccCeEEEeecCCccHHHHHHHHhhCCCCcEEEEeecCCCccccCchHHHHHHHHHHhCCCCCEEEEecCCCCccHHHHHH
Confidence 4566666655555532 12322 5677777775 55666432 225567777788776433 4432 22
Q ss_pred c-cCCCCCcEEECCCCccCccccchHhhhcCCCCcEEEccCCCCCCCCChHHHHHHHHhhCccCceeecCCCCCCc
Q 035577 482 L-HRLLKLTVLDLRFNKISTAKCLGQLAANYNSLQAISLEGNPAQKNVGDEQLKKNLQSLLPHLVYFNWQPMKAST 556 (662)
Q Consensus 482 l-~~L~~L~~LdLs~N~Ls~l~~l~~~l~~l~~L~~L~Ls~N~l~~~~~~~~l~~~l~~~l~~L~~Ld~~~~~~~~ 556 (662)
+ ..+++|+.|+|++|.+++.. ++..+..+++|+.|+|++|+++. .....+...+++|++|++..+.++.
T Consensus 458 ~~~~~~~L~~L~L~~n~l~~~~-~~~~~~~~~~L~~L~l~~n~l~~-----~~~~~~~~~l~~L~~L~ls~n~it~ 527 (592)
T 3ogk_B 458 IGQYSPNVRWMLLGYVGESDEG-LMEFSRGCPNLQKLEMRGCCFSE-----RAIAAAVTKLPSLRYLWVQGYRASM 527 (592)
T ss_dssp HHHSCTTCCEEEECSCCSSHHH-HHHHHTCCTTCCEEEEESCCCBH-----HHHHHHHHHCSSCCEEEEESCBCCT
T ss_pred HHHhCccceEeeccCCCCCHHH-HHHHHhcCcccCeeeccCCCCcH-----HHHHHHHHhcCccCeeECcCCcCCH
Confidence 2 34778999999999887642 35566788899999999998742 2233445678899999998887544
No 133
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.29 E-value=1.2e-11 Score=118.29 Aligned_cols=101 Identities=26% Similarity=0.386 Sum_probs=75.0
Q ss_pred CCEEEccCCCCcccCCCcCCCCccEEEccCCCCCCCc--CCCCCCCCCEEeCcCCCCcccccc-ccCCCCCcEEEcCCCC
Q 035577 399 LKVLNLSGNAIVRITAGALPRGLHILNLSKNNISTIE--GLRELTRLRVLDLSYNRILRIGHG-LASCSSLKELYLAGNK 475 (662)
Q Consensus 399 L~~L~Ls~N~L~~l~~~~~~~~L~~L~Ls~N~L~~lp--~l~~L~~L~~LdLs~N~Ls~Lp~~-l~~L~~L~~L~Ls~N~ 475 (662)
.+.|++++|.|+.+|... +..|++|+|++|.|+.++ .|..+++|++|+|++|+|+.+|.. |..+++|++|+|++|+
T Consensus 11 ~~~l~~s~n~l~~ip~~~-~~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~ 89 (170)
T 3g39_A 11 GTTVDCSGKSLASVPTGI-PTTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQ 89 (170)
T ss_dssp TTEEECTTSCCSSCCSCC-CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred CCEEEeCCCCcCccCccC-CCCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCCCc
Confidence 456666666666665433 356777777777777663 477888888888888888887765 6788888888888888
Q ss_pred CCCcc--cccCCCCCcEEECCCCccCc
Q 035577 476 ISEVE--GLHRLLKLTVLDLRFNKIST 500 (662)
Q Consensus 476 L~~l~--~l~~L~~L~~LdLs~N~Ls~ 500 (662)
|+.++ .+..+++|+.|+|++|.+..
T Consensus 90 l~~~~~~~~~~l~~L~~L~L~~N~~~c 116 (170)
T 3g39_A 90 LKSIPRGAFDNLKSLTHIWLLNNPWDC 116 (170)
T ss_dssp CCCCCTTTTTTCTTCCEEECCSSCBCT
T ss_pred cCEeCHHHhcCCCCCCEEEeCCCCCCC
Confidence 88874 47788888888888888874
No 134
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.29 E-value=3.7e-14 Score=138.68 Aligned_cols=129 Identities=32% Similarity=0.385 Sum_probs=90.3
Q ss_pred CCCCCCCCEEEccCCCCcccCCCcCC--CCccEEEccCCCCCCCcC-CCCCCCCCEEeCcCCCCccccccccCCCCCcEE
Q 035577 393 LSAFVSLKVLNLSGNAIVRITAGALP--RGLHILNLSKNNISTIEG-LRELTRLRVLDLSYNRILRIGHGLASCSSLKEL 469 (662)
Q Consensus 393 l~~L~~L~~L~Ls~N~L~~l~~~~~~--~~L~~L~Ls~N~L~~lp~-l~~L~~L~~LdLs~N~Ls~Lp~~l~~L~~L~~L 469 (662)
+..+++|++|+|++|.|+.++ .+. ++|++|+|++|.|+.+|. +..+++|++|+|++|.|+.+| .+..+++|++|
T Consensus 44 ~~~l~~L~~L~ls~n~l~~l~--~~~~l~~L~~L~l~~n~l~~l~~~~~~~~~L~~L~L~~N~l~~l~-~~~~l~~L~~L 120 (198)
T 1ds9_A 44 LSTLKACKHLALSTNNIEKIS--SLSGMENLRILSLGRNLIKKIENLDAVADTLEELWISYNQIASLS-GIEKLVNLRVL 120 (198)
T ss_dssp HHHTTTCSEEECSEEEESCCC--CHHHHTTCCEEEEEEEEECSCSSHHHHHHHCSEEEEEEEECCCHH-HHHHHHHSSEE
T ss_pred HhcCCCCCEEECCCCCCcccc--ccccCCCCCEEECCCCCcccccchhhcCCcCCEEECcCCcCCcCC-ccccCCCCCEE
Confidence 556666777777777666655 222 667777777777776653 344577888888888887776 57777888888
Q ss_pred EcCCCCCCCcc---cccCCCCCcEEECCCCccCccc--------cchHhhhcCCCCcEEEccCCCCCC
Q 035577 470 YLAGNKISEVE---GLHRLLKLTVLDLRFNKISTAK--------CLGQLAANYNSLQAISLEGNPAQK 526 (662)
Q Consensus 470 ~Ls~N~L~~l~---~l~~L~~L~~LdLs~N~Ls~l~--------~l~~~l~~l~~L~~L~Ls~N~l~~ 526 (662)
+|++|.|+.++ .+..+++|+.|++++|.++... .....+..+++|+.|+ +|+++.
T Consensus 121 ~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~~l~~L~~Ld--~~~i~~ 186 (198)
T 1ds9_A 121 YMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKKLD--GMPVDV 186 (198)
T ss_dssp EESEEECCCHHHHHHHTTTTTCSEEEECSCHHHHHHHTTTTHHHHHHHHHHHCSSCSEEC--CGGGTT
T ss_pred ECCCCcCCchhHHHHHhcCCCCCEEEecCCccccccccccchHHHHHHHHHhCCCcEEEC--CcccCH
Confidence 88888887763 4777888888888888876541 0123467888999886 787765
No 135
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=99.27 E-value=1.7e-11 Score=129.65 Aligned_cols=117 Identities=19% Similarity=0.259 Sum_probs=92.3
Q ss_pred EEEccCC-CCCCCcCCCCCCCCCEEeCcC-CCCccccc-cccCCCCCcEEEcCCCCCCCcc--cccCCCCCcEEECCCCc
Q 035577 423 ILNLSKN-NISTIEGLRELTRLRVLDLSY-NRILRIGH-GLASCSSLKELYLAGNKISEVE--GLHRLLKLTVLDLRFNK 497 (662)
Q Consensus 423 ~L~Ls~N-~L~~lp~l~~L~~L~~LdLs~-N~Ls~Lp~-~l~~L~~L~~L~Ls~N~L~~l~--~l~~L~~L~~LdLs~N~ 497 (662)
.++++++ .|+.+|.+..+++|+.|+|++ |.|+.+|. .|..+++|+.|+|++|+|++++ .|..+++|+.|+|++|+
T Consensus 12 ~v~~~~~n~l~~ip~l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~ 91 (347)
T 2ifg_A 12 GLRCTRDGALDSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNA 91 (347)
T ss_dssp CEECCSSCCCTTTTTSCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSSC
T ss_pred EEEcCCCCCCCccCCCCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCCCc
Confidence 4567776 777777677788888888885 88888874 4888888888888888888874 57888889999999999
Q ss_pred cCccccchHhhhcCCCCcEEEccCCCCCCCCChHHHHHHHHhhCc
Q 035577 498 ISTAKCLGQLAANYNSLQAISLEGNPAQKNVGDEQLKKNLQSLLP 542 (662)
Q Consensus 498 Ls~l~~l~~~l~~l~~L~~L~Ls~N~l~~~~~~~~l~~~l~~~l~ 542 (662)
|+.++ +..+..++ |+.|+|.+|+|.|.|...++..|+.....
T Consensus 92 l~~~~--~~~~~~~~-L~~l~l~~N~~~c~c~l~~~~~~~~~~~~ 133 (347)
T 2ifg_A 92 LESLS--WKTVQGLS-LQELVLSGNPLHCSCALRWLQRWEEEGLG 133 (347)
T ss_dssp CSCCC--STTTCSCC-CCEEECCSSCCCCCGGGHHHHHHHHTTCS
T ss_pred cceeC--HHHcccCC-ceEEEeeCCCccCCCccHHHHHHHHhCcc
Confidence 88875 44555555 99999999999999988888877765433
No 136
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.26 E-value=2.7e-11 Score=116.46 Aligned_cols=101 Identities=24% Similarity=0.340 Sum_probs=69.4
Q ss_pred CEEEccCCCCcccCCCcCCCCccEEEccCCCCCCCc--CCCCCCCCCEEeCcCCCCcccccc-ccCCCCCcEEEcCCCCC
Q 035577 400 KVLNLSGNAIVRITAGALPRGLHILNLSKNNISTIE--GLRELTRLRVLDLSYNRILRIGHG-LASCSSLKELYLAGNKI 476 (662)
Q Consensus 400 ~~L~Ls~N~L~~l~~~~~~~~L~~L~Ls~N~L~~lp--~l~~L~~L~~LdLs~N~Ls~Lp~~-l~~L~~L~~L~Ls~N~L 476 (662)
+.+++++|.|+.+|... +.+|++|+|++|+|+.++ .|..+++|++|+|++|+|+.+|.. |..+++|++|+|++|+|
T Consensus 15 ~~l~~~~n~l~~iP~~~-~~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~l 93 (174)
T 2r9u_A 15 TLVNCQNIRLASVPAGI-PTDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDNHL 93 (174)
T ss_dssp SEEECCSSCCSSCCSCC-CTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCC
T ss_pred cEEEeCCCCCCccCCCc-CCCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCCcc
Confidence 45566666665555432 356666666666666653 467777777777777777777765 56777788888888877
Q ss_pred CCcc--cccCCCCCcEEECCCCccCcc
Q 035577 477 SEVE--GLHRLLKLTVLDLRFNKISTA 501 (662)
Q Consensus 477 ~~l~--~l~~L~~L~~LdLs~N~Ls~l 501 (662)
+.++ .+..+++|+.|+|++|.|...
T Consensus 94 ~~l~~~~~~~l~~L~~L~L~~N~~~c~ 120 (174)
T 2r9u_A 94 KSIPRGAFDNLKSLTHIYLYNNPWDCE 120 (174)
T ss_dssp CCCCTTTTTTCTTCSEEECCSSCBCTT
T ss_pred ceeCHHHhccccCCCEEEeCCCCcccc
Confidence 7774 367777888888888877744
No 137
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.22 E-value=1.6e-11 Score=129.44 Aligned_cols=38 Identities=24% Similarity=0.287 Sum_probs=21.7
Q ss_pred CCCCCEEEccCCCCcccCCCcCC--CCccEEEccCCCCCCC
Q 035577 396 FVSLKVLNLSGNAIVRITAGALP--RGLHILNLSKNNISTI 434 (662)
Q Consensus 396 L~~L~~L~Ls~N~L~~l~~~~~~--~~L~~L~Ls~N~L~~l 434 (662)
+++|+.|+|.+ .++.|+..+|. .+|+.|+|++|.+..+
T Consensus 100 ~~~L~~l~L~~-~i~~I~~~aF~~~~~L~~l~l~~n~i~~i 139 (329)
T 3sb4_A 100 KQTLEKVILSE-KIKNIEDAAFKGCDNLKICQIRKKTAPNL 139 (329)
T ss_dssp CTTCCC-CBCT-TCCEECTTTTTTCTTCCEEEBCCSSCCEE
T ss_pred cCCCcEEECCc-cccchhHHHhhcCcccceEEcCCCCcccc
Confidence 56666666665 56666655554 5566666666655443
No 138
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.21 E-value=9.9e-12 Score=140.27 Aligned_cols=269 Identities=12% Similarity=0.061 Sum_probs=174.5
Q ss_pred cccCcccccccCCCCCccCCC------CCCCCCCceeecCCccCCCcchhhhcCCCCCCCCcccC-CCCCCCCccCCccc
Q 035577 274 YSALAKDWVMPDENSVKKLQG------ESLHEQWDKLPSKHFKIKRIKEWVNDLQHCSPLEESDE-TSVSNDQVKRDPKV 346 (662)
Q Consensus 274 l~~L~~~~L~ls~N~I~~L~~------~s~l~~L~~L~l~~~si~~L~~~~~~L~~l~~L~~L~~-l~ls~n~L~~~p~~ 346 (662)
+..|.. ++++.|.+..+.. +..+++|+.|++.+|.+..++..+..+..+..|..-.. ..............
T Consensus 191 ~~~L~~--L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~ 268 (592)
T 3ogk_B 191 NTSLEV--LNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFEILELVGFFKAAANLEEFCGGSLNEDIGMPEKYMNLVF 268 (592)
T ss_dssp CCCCCE--EECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSCBGGGGHHHHHHCTTCCEEEECBCCCCTTCTTSSSCCCC
T ss_pred CCCccE--EEeeccCCCccCHHHHHHHHhhCCCCcEEeccCccHHHHHHHHhhhhHHHhhcccccccccchHHHHHHhhc
Confidence 345555 7777777763332 34578899999998888877766555544443332110 00000111122223
Q ss_pred CCCCCceeeCCccccchhhhHHHhhhccCCccEEEccCCCCCCCC--C-CCCCCCCCEEEccCCCCcccCCCcC---CCC
Q 035577 347 LNGSTAVKVDGKVTAGMEAVTKYISSLSASATTVQLSNHGLVVIP--F-LSAFVSLKVLNLSGNAIVRITAGAL---PRG 420 (662)
Q Consensus 347 l~~L~~L~l~~~~~~~l~~l~~~l~~l~~sL~~L~Ls~N~L~~lp--~-l~~L~~L~~L~Ls~N~L~~l~~~~~---~~~ 420 (662)
+.+|+.|.+.+.....+ +..+..++ +|+.|+|++|.++... . +..+++|++|+|+ +.+.......+ .++
T Consensus 269 ~~~L~~L~l~~~~~~~l---~~~~~~~~-~L~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~-~~~~~~~l~~~~~~~~~ 343 (592)
T 3ogk_B 269 PRKLCRLGLSYMGPNEM---PILFPFAA-QIRKLDLLYALLETEDHCTLIQKCPNLEVLETR-NVIGDRGLEVLAQYCKQ 343 (592)
T ss_dssp CTTCCEEEETTCCTTTG---GGGGGGGG-GCCEEEETTCCCCHHHHHHHHTTCTTCCEEEEE-GGGHHHHHHHHHHHCTT
T ss_pred cccccccCccccchhHH---HHHHhhcC-CCcEEecCCCcCCHHHHHHHHHhCcCCCEEecc-CccCHHHHHHHHHhCCC
Confidence 56788888876433333 33334444 3999999999976322 2 6889999999999 54432211111 168
Q ss_pred ccEEEccC-----------CCCCC--CcC-CCCCCCCCEEeCcCCCCcc-ccccccC-CCCCcEEEcC----CCCCCCcc
Q 035577 421 LHILNLSK-----------NNIST--IEG-LRELTRLRVLDLSYNRILR-IGHGLAS-CSSLKELYLA----GNKISEVE 480 (662)
Q Consensus 421 L~~L~Ls~-----------N~L~~--lp~-l~~L~~L~~LdLs~N~Ls~-Lp~~l~~-L~~L~~L~Ls----~N~L~~l~ 480 (662)
|++|+|++ |.++. +.. +..+++|++|+++.|.++. .+..+.. +++|+.|+|+ .|.+++.|
T Consensus 344 L~~L~L~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~n~l~~~p 423 (592)
T 3ogk_B 344 LKRLRIERGADEQGMEDEEGLVSQRGLIALAQGCQELEYMAVYVSDITNESLESIGTYLKNLCDFRLVLLDREERITDLP 423 (592)
T ss_dssp CCEEEEECCCCSSTTSSTTCCCCHHHHHHHHHHCTTCSEEEEEESCCCHHHHHHHHHHCCSCCEEEEEECSCCSCCSSCC
T ss_pred CCEEEeecCccccccccccCccCHHHHHHHHhhCccCeEEEeecCCccHHHHHHHHhhCCCCcEEEEeecCCCccccCch
Confidence 99999993 56663 222 3458999999999999883 2334544 8999999996 77888742
Q ss_pred -------cccCCCCCcEEECCCCc--cCccccchHhhhcCCCCcEEEccCCCCCCCCChHHHHHHHHhhCccCceeecCC
Q 035577 481 -------GLHRLLKLTVLDLRFNK--ISTAKCLGQLAANYNSLQAISLEGNPAQKNVGDEQLKKNLQSLLPHLVYFNWQP 551 (662)
Q Consensus 481 -------~l~~L~~L~~LdLs~N~--Ls~l~~l~~~l~~l~~L~~L~Ls~N~l~~~~~~~~l~~~l~~~l~~L~~Ld~~~ 551 (662)
.+..+++|+.|+|++|. +++.. +......+++|+.|+|++|.+++ ..+ ..+...+++|++|++..
T Consensus 424 ~~~~~~~~~~~~~~L~~L~L~~~~~~l~~~~-~~~~~~~~~~L~~L~L~~n~l~~----~~~-~~~~~~~~~L~~L~l~~ 497 (592)
T 3ogk_B 424 LDNGVRSLLIGCKKLRRFAFYLRQGGLTDLG-LSYIGQYSPNVRWMLLGYVGESD----EGL-MEFSRGCPNLQKLEMRG 497 (592)
T ss_dssp CHHHHHHHHHHCTTCCEEEEECCGGGCCHHH-HHHHHHSCTTCCEEEECSCCSSH----HHH-HHHHTCCTTCCEEEEES
T ss_pred HHHHHHHHHHhCCCCCEEEEecCCCCccHHH-HHHHHHhCccceEeeccCCCCCH----HHH-HHHHhcCcccCeeeccC
Confidence 25678999999997544 66532 23444568999999999999763 222 34456689999999999
Q ss_pred CCCC
Q 035577 552 MKAS 555 (662)
Q Consensus 552 ~~~~ 555 (662)
+.+.
T Consensus 498 n~l~ 501 (592)
T 3ogk_B 498 CCFS 501 (592)
T ss_dssp CCCB
T ss_pred CCCc
Confidence 9864
No 139
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.16 E-value=8.4e-11 Score=123.81 Aligned_cols=99 Identities=15% Similarity=0.090 Sum_probs=71.2
Q ss_pred CCCCCEEeCcCCCCcccccc-ccCCCCCcEEEcCCCCCCCcc--cccCCCCCc-EEECCCCccCccccchHhhhcCCCCc
Q 035577 440 LTRLRVLDLSYNRILRIGHG-LASCSSLKELYLAGNKISEVE--GLHRLLKLT-VLDLRFNKISTAKCLGQLAANYNSLQ 515 (662)
Q Consensus 440 L~~L~~LdLs~N~Ls~Lp~~-l~~L~~L~~L~Ls~N~L~~l~--~l~~L~~L~-~LdLs~N~Ls~l~~l~~~l~~l~~L~ 515 (662)
+++|+.|+|++|.++.||.. |..+.+|+.|+|.+| |+.++ +|..+.+|+ .|++.+ .++.+. +.+|..+++|+
T Consensus 225 ~~~L~~l~L~~n~i~~I~~~aF~~~~~L~~l~l~~n-i~~I~~~aF~~~~~L~~~l~l~~-~l~~I~--~~aF~~c~~L~ 300 (329)
T 3sb4_A 225 MPNLVSLDISKTNATTIPDFTFAQKKYLLKIKLPHN-LKTIGQRVFSNCGRLAGTLELPA-SVTAIE--FGAFMGCDNLR 300 (329)
T ss_dssp CTTCCEEECTTBCCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEEECT-TCCEEC--TTTTTTCTTEE
T ss_pred cCCCeEEECCCCCcceecHhhhhCCCCCCEEECCcc-cceehHHHhhCChhccEEEEEcc-cceEEc--hhhhhCCccCC
Confidence 67788888888888888765 778888888888877 76663 677888888 888877 677665 56777888888
Q ss_pred EEEccCCCCCCCCChHHHHHHHHhhCccCceee
Q 035577 516 AISLEGNPAQKNVGDEQLKKNLQSLLPHLVYFN 548 (662)
Q Consensus 516 ~L~Ls~N~l~~~~~~~~l~~~l~~~l~~L~~Ld 548 (662)
.|++.+|.+....+ ..+..+++|+.+.
T Consensus 301 ~l~l~~n~i~~I~~------~aF~~~~~L~~ly 327 (329)
T 3sb4_A 301 YVLATGDKITTLGD------ELFGNGVPSKLIY 327 (329)
T ss_dssp EEEECSSCCCEECT------TTTCTTCCCCEEE
T ss_pred EEEeCCCccCccch------hhhcCCcchhhhc
Confidence 88888887764222 2334456666553
No 140
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=99.15 E-value=4.5e-12 Score=136.84 Aligned_cols=154 Identities=21% Similarity=0.226 Sum_probs=114.2
Q ss_pred ccCCccEEEccCCCCCCCC-----C-CC-CCCCCCEEEccCCCCcccCCCcCC---CCccEEEccCCCCCCCc--C----
Q 035577 373 LSASATTVQLSNHGLVVIP-----F-LS-AFVSLKVLNLSGNAIVRITAGALP---RGLHILNLSKNNISTIE--G---- 436 (662)
Q Consensus 373 l~~sL~~L~Ls~N~L~~lp-----~-l~-~L~~L~~L~Ls~N~L~~l~~~~~~---~~L~~L~Ls~N~L~~lp--~---- 436 (662)
....++.|+|++|.|+... . +. ..++|++|+|++|.|+......+. .+|+.|+|++|.|+... .
T Consensus 70 ~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~ 149 (372)
T 3un9_A 70 VLSSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDL 149 (372)
T ss_dssp HHTTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHH
T ss_pred HHhhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHH
Confidence 3445889999999887433 1 22 346899999999988654332332 57899999999887532 2
Q ss_pred C-CCCCCCCEEeCcCCCCcc-----ccccccCCCCCcEEEcCCCCCCCc------ccccCCCCCcEEECCCCccCccc--
Q 035577 437 L-RELTRLRVLDLSYNRILR-----IGHGLASCSSLKELYLAGNKISEV------EGLHRLLKLTVLDLRFNKISTAK-- 502 (662)
Q Consensus 437 l-~~L~~L~~LdLs~N~Ls~-----Lp~~l~~L~~L~~L~Ls~N~L~~l------~~l~~L~~L~~LdLs~N~Ls~l~-- 502 (662)
+ ...++|++|+|++|.|+. ++..+..+++|++|+|++|.|++. ..+..++.|+.|+|++|.|++..
T Consensus 150 L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~~ 229 (372)
T 3un9_A 150 LLHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAAL 229 (372)
T ss_dssp HHSTTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHHHH
T ss_pred HHhcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHHHH
Confidence 2 356789999999999873 555567888999999999998763 24667788999999999998642
Q ss_pred cchHhhhcCCCCcEEEccCCCCCC
Q 035577 503 CLGQLAANYNSLQAISLEGNPAQK 526 (662)
Q Consensus 503 ~l~~~l~~l~~L~~L~Ls~N~l~~ 526 (662)
.+...+..+++|++|+|++|+|+.
T Consensus 230 ~l~~~L~~~~~L~~L~Ls~N~i~~ 253 (372)
T 3un9_A 230 ALARAAREHPSLELLHLYFNELSS 253 (372)
T ss_dssp HHHHHHHHCSSCCEEECTTSSCCH
T ss_pred HHHHHHHhCCCCCEEeccCCCCCH
Confidence 345566678899999999998864
No 141
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.12 E-value=4.8e-12 Score=142.71 Aligned_cols=199 Identities=12% Similarity=0.100 Sum_probs=119.2
Q ss_pred cCCCCCceeeCCccccchhhhHHHhhhccCCccEEEccCCCCC--CCCC-CCCCCCCCEEEccC---------CCCcccC
Q 035577 346 VLNGSTAVKVDGKVTAGMEAVTKYISSLSASATTVQLSNHGLV--VIPF-LSAFVSLKVLNLSG---------NAIVRIT 413 (662)
Q Consensus 346 ~l~~L~~L~l~~~~~~~l~~l~~~l~~l~~sL~~L~Ls~N~L~--~lp~-l~~L~~L~~L~Ls~---------N~L~~l~ 413 (662)
.+.+|+.|++.++... -..+...+..++. |+.|++++| +. .++. ...+++|++|+|.+ +.++...
T Consensus 287 ~~~~L~~L~L~~~~l~-~~~l~~~~~~~~~-L~~L~l~~~-~~~~~l~~l~~~~~~L~~L~L~~~~~~g~~~~~~l~~~~ 363 (594)
T 2p1m_B 287 VCSRLTTLNLSYATVQ-SYDLVKLLCQCPK-LQRLWVLDY-IEDAGLEVLASTCKDLRELRVFPSEPFVMEPNVALTEQG 363 (594)
T ss_dssp HHTTCCEEECTTCCCC-HHHHHHHHTTCTT-CCEEEEEGG-GHHHHHHHHHHHCTTCCEEEEECSCTTCSSCSSCCCHHH
T ss_pred hhCCCCEEEccCCCCC-HHHHHHHHhcCCC-cCEEeCcCc-cCHHHHHHHHHhCCCCCEEEEecCcccccccCCCCCHHH
Confidence 3567777777775532 2223333444443 777777777 33 1222 23467777777733 3443221
Q ss_pred CCcC---CCCccEEEccCCCCCCC--cCCC-CCCCCCEEeCc--C----CCCccccc------cccCCCCCcEEEcCCCC
Q 035577 414 AGAL---PRGLHILNLSKNNISTI--EGLR-ELTRLRVLDLS--Y----NRILRIGH------GLASCSSLKELYLAGNK 475 (662)
Q Consensus 414 ~~~~---~~~L~~L~Ls~N~L~~l--p~l~-~L~~L~~LdLs--~----N~Ls~Lp~------~l~~L~~L~~L~Ls~N~ 475 (662)
...+ .++|+.|.+..|.++.. ..+. .+++|+.|+|+ + |.++..|. .+..+++|+.|+|++ .
T Consensus 364 l~~l~~~~~~L~~L~~~~~~l~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~l~~~~~~L~~L~L~~-~ 442 (594)
T 2p1m_B 364 LVSVSMGCPKLESVLYFCRQMTNAALITIARNRPNMTRFRLCIIEPKAPDYLTLEPLDIGFGAIVEHCKDLRRLSLSG-L 442 (594)
T ss_dssp HHHHHHHCTTCCEEEEEESCCCHHHHHHHHHHCTTCCEEEEEESSTTCCCTTTCCCTHHHHHHHHHHCTTCCEEECCS-S
T ss_pred HHHHHHhchhHHHHHHhcCCcCHHHHHHHHhhCCCcceeEeecccCCCcccccCCchhhHHHHHHhhCCCccEEeecC-c
Confidence 1111 15778887777777642 2232 46788888888 3 55664332 255678888888866 5
Q ss_pred CCCc--ccccC-CCCCcEEECCCCccCccccchHhhhcCCCCcEEEccCCCCCCCCChHHHHHHHHhhCccCceeecCCC
Q 035577 476 ISEV--EGLHR-LLKLTVLDLRFNKISTAKCLGQLAANYNSLQAISLEGNPAQKNVGDEQLKKNLQSLLPHLVYFNWQPM 552 (662)
Q Consensus 476 L~~l--~~l~~-L~~L~~LdLs~N~Ls~l~~l~~~l~~l~~L~~L~Ls~N~l~~~~~~~~l~~~l~~~l~~L~~Ld~~~~ 552 (662)
+++. ..+.. +++|+.|+|++|.+++.. +..+...+++|+.|+|++|+++. . ....+...+++|++|++..+
T Consensus 443 l~~~~~~~l~~~~~~L~~L~L~~~~i~~~~-~~~l~~~~~~L~~L~L~~n~~~~----~-~~~~~~~~l~~L~~L~l~~~ 516 (594)
T 2p1m_B 443 LTDKVFEYIGTYAKKMEMLSVAFAGDSDLG-MHHVLSGCDSLRKLEIRDCPFGD----K-ALLANASKLETMRSLWMSSC 516 (594)
T ss_dssp CCHHHHHHHHHHCTTCCEEEEESCCSSHHH-HHHHHHHCTTCCEEEEESCSCCH----H-HHHHTGGGGGGSSEEEEESS
T ss_pred ccHHHHHHHHHhchhccEeeccCCCCcHHH-HHHHHhcCCCcCEEECcCCCCcH----H-HHHHHHHhCCCCCEEeeeCC
Confidence 5543 34443 778888888888887643 23333668888888888888732 1 22233455788888888888
Q ss_pred CC
Q 035577 553 KA 554 (662)
Q Consensus 553 ~~ 554 (662)
..
T Consensus 517 ~~ 518 (594)
T 2p1m_B 517 SV 518 (594)
T ss_dssp CC
T ss_pred CC
Confidence 76
No 142
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.04 E-value=8.4e-11 Score=132.55 Aligned_cols=87 Identities=13% Similarity=0.208 Sum_probs=42.6
Q ss_pred CCCCcEEEcCCCCCCCc--cccc-CCCCCcEEECC--C----CccCccc---cchHhhhcCCCCcEEEccCCCCCCCCCh
Q 035577 463 CSSLKELYLAGNKISEV--EGLH-RLLKLTVLDLR--F----NKISTAK---CLGQLAANYNSLQAISLEGNPAQKNVGD 530 (662)
Q Consensus 463 L~~L~~L~Ls~N~L~~l--~~l~-~L~~L~~LdLs--~----N~Ls~l~---~l~~~l~~l~~L~~L~Ls~N~l~~~~~~ 530 (662)
+++|+.|.+..|.+++. ..+. .+++|+.|+|+ + |.++..+ .++..+..+++|+.|+|++ .++ .
T Consensus 371 ~~~L~~L~~~~~~l~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~l~~~~~~L~~L~L~~-~l~----~ 445 (594)
T 2p1m_B 371 CPKLESVLYFCRQMTNAALITIARNRPNMTRFRLCIIEPKAPDYLTLEPLDIGFGAIVEHCKDLRRLSLSG-LLT----D 445 (594)
T ss_dssp CTTCCEEEEEESCCCHHHHHHHHHHCTTCCEEEEEESSTTCCCTTTCCCTHHHHHHHHHHCTTCCEEECCS-SCC----H
T ss_pred chhHHHHHHhcCCcCHHHHHHHHhhCCCcceeEeecccCCCcccccCCchhhHHHHHHhhCCCccEEeecC-ccc----H
Confidence 44455554444444432 1222 35566666665 3 4444221 1233345556666666654 222 1
Q ss_pred HHHHHHHHhhCccCceeecCCCCCC
Q 035577 531 EQLKKNLQSLLPHLVYFNWQPMKAS 555 (662)
Q Consensus 531 ~~l~~~l~~~l~~L~~Ld~~~~~~~ 555 (662)
. ....+...+++|++|++..+.+.
T Consensus 446 ~-~~~~l~~~~~~L~~L~L~~~~i~ 469 (594)
T 2p1m_B 446 K-VFEYIGTYAKKMEMLSVAFAGDS 469 (594)
T ss_dssp H-HHHHHHHHCTTCCEEEEESCCSS
T ss_pred H-HHHHHHHhchhccEeeccCCCCc
Confidence 1 22233345777888887777653
No 143
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=99.01 E-value=6.5e-10 Score=117.39 Aligned_cols=100 Identities=19% Similarity=0.209 Sum_probs=53.3
Q ss_pred EEEccCC-CCCCCCCCCCCCCCCEEEccC-CCCcccCCCcCCCCccEEEccCCCCCCCcCCCCCCCCCEEeCcCCCCccc
Q 035577 379 TVQLSNH-GLVVIPFLSAFVSLKVLNLSG-NAIVRITAGALPRGLHILNLSKNNISTIEGLRELTRLRVLDLSYNRILRI 456 (662)
Q Consensus 379 ~L~Ls~N-~L~~lp~l~~L~~L~~L~Ls~-N~L~~l~~~~~~~~L~~L~Ls~N~L~~lp~l~~L~~L~~LdLs~N~Ls~L 456 (662)
.++++++ +|+.||.|..+++|++|+|++ |.|+.++... |..|++|++|+|++|.|+.+
T Consensus 12 ~v~~~~~n~l~~ip~l~~~~~L~~L~l~~~n~l~~~~~~~--------------------~~~l~~L~~L~l~~N~l~~~ 71 (347)
T 2ifg_A 12 GLRCTRDGALDSLHHLPGAENLTELYIENQQHLQHLELRD--------------------LRGLGELRNLTIVKSGLRFV 71 (347)
T ss_dssp CEECCSSCCCTTTTTSCSCSCCSEEECCSCSSCCEECGGG--------------------SCSCCCCSEEECCSSCCCEE
T ss_pred EEEcCCCCCCCccCCCCCCCCeeEEEccCCCCCCCcChhH--------------------hccccCCCEEECCCCcccee
Confidence 4566666 666666666666666666664 6666665444 44445555555555555544
Q ss_pred ccc-ccCCCCCcEEEcCCCCCCCcc--cccCCCCCcEEECCCCccC
Q 035577 457 GHG-LASCSSLKELYLAGNKISEVE--GLHRLLKLTVLDLRFNKIS 499 (662)
Q Consensus 457 p~~-l~~L~~L~~L~Ls~N~L~~l~--~l~~L~~L~~LdLs~N~Ls 499 (662)
+.. |..+++|+.|+|++|+|+.++ .+..+. |+.|+|.+|.|.
T Consensus 72 ~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~-L~~l~l~~N~~~ 116 (347)
T 2ifg_A 72 APDAFHFTPRLSRLNLSFNALESLSWKTVQGLS-LQELVLSGNPLH 116 (347)
T ss_dssp CTTGGGSCSCCCEEECCSSCCSCCCSTTTCSCC-CCEEECCSSCCC
T ss_pred CHHHhcCCcCCCEEeCCCCccceeCHHHcccCC-ceEEEeeCCCcc
Confidence 332 445555555555555555443 122222 555555555554
No 144
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=98.99 E-value=7e-11 Score=127.44 Aligned_cols=177 Identities=21% Similarity=0.238 Sum_probs=126.8
Q ss_pred CCCCCceeeCCccccch--hhhHHHhhhccCCccEEEccCCCCCCC--CC-CCCCCCCCEEEccCCCCcccCCCcC----
Q 035577 347 LNGSTAVKVDGKVTAGM--EAVTKYISSLSASATTVQLSNHGLVVI--PF-LSAFVSLKVLNLSGNAIVRITAGAL---- 417 (662)
Q Consensus 347 l~~L~~L~l~~~~~~~l--~~l~~~l~~l~~sL~~L~Ls~N~L~~l--p~-l~~L~~L~~L~Ls~N~L~~l~~~~~---- 417 (662)
...|+.|++.++.+... ..+...+...+..|+.|+|++|.|+.. .. ...+++|++|+|++|.|+......+
T Consensus 71 ~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L 150 (372)
T 3un9_A 71 LSSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLL 150 (372)
T ss_dssp HTTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHH
T ss_pred HhhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHH
Confidence 46788999988665433 344455554545699999999998742 22 3346689999999999976543332
Q ss_pred ---CCCccEEEccCCCCCCC-----c-CCCCCCCCCEEeCcCCCCcc-----ccccccCCCCCcEEEcCCCCCCCc----
Q 035577 418 ---PRGLHILNLSKNNISTI-----E-GLRELTRLRVLDLSYNRILR-----IGHGLASCSSLKELYLAGNKISEV---- 479 (662)
Q Consensus 418 ---~~~L~~L~Ls~N~L~~l-----p-~l~~L~~L~~LdLs~N~Ls~-----Lp~~l~~L~~L~~L~Ls~N~L~~l---- 479 (662)
.+.|++|+|++|.|+.. . .+..+++|++|+|++|.|+. ++..+..+++|++|+|++|.|++.
T Consensus 151 ~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~~~ 230 (372)
T 3un9_A 151 LHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAALA 230 (372)
T ss_dssp HSTTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHHHHH
T ss_pred HhcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHHHHH
Confidence 26899999999999852 1 35678899999999999983 455678889999999999999864
Q ss_pred --ccccCCCCCcEEECCCCccCccccchHhhhcCC-----CCcEEE--ccCCCCC
Q 035577 480 --EGLHRLLKLTVLDLRFNKISTAKCLGQLAANYN-----SLQAIS--LEGNPAQ 525 (662)
Q Consensus 480 --~~l~~L~~L~~LdLs~N~Ls~l~~l~~~l~~l~-----~L~~L~--Ls~N~l~ 525 (662)
..+..++.|++|+|++|.|++.. ...+..+. .|+.+. +.+|.+.
T Consensus 231 l~~~L~~~~~L~~L~Ls~N~i~~~g--~~~L~~~~~~~~~~L~~l~~ll~~~~~~ 283 (372)
T 3un9_A 231 LARAAREHPSLELLHLYFNELSSEG--RQVLRDLGGAAEGGARVVVSLTEGTAVS 283 (372)
T ss_dssp HHHHHHHCSSCCEEECTTSSCCHHH--HHHHHHCC------CEEECCCC----CH
T ss_pred HHHHHHhCCCCCEEeccCCCCCHHH--HHHHHHHhcCCCccchhhHhhhcCCccC
Confidence 24567789999999999999753 22333332 166666 6666653
No 145
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=98.92 E-value=1.6e-08 Score=110.11 Aligned_cols=143 Identities=19% Similarity=0.212 Sum_probs=99.1
Q ss_pred CccEEEccCCCCCCCCC--CCCCCCCCEEEccCCCCcccCCCcCC-CCccEEEccCCCCCCCc--CCCCCCCCCEEeCcC
Q 035577 376 SATTVQLSNHGLVVIPF--LSAFVSLKVLNLSGNAIVRITAGALP-RGLHILNLSKNNISTIE--GLRELTRLRVLDLSY 450 (662)
Q Consensus 376 sL~~L~Ls~N~L~~lp~--l~~L~~L~~L~Ls~N~L~~l~~~~~~-~~L~~L~Ls~N~L~~lp--~l~~L~~L~~LdLs~ 450 (662)
.|+.+.|.++ ++.|+. |.++++|+.|+|..| ++.|+..+|. .+|+.+.| .+.++.++ .|..+.+|+.+.+.+
T Consensus 204 ~L~~l~lp~~-l~~I~~~aF~~~~~L~~l~l~~~-l~~I~~~aF~~~~L~~i~l-p~~i~~I~~~aF~~c~~L~~l~l~~ 280 (401)
T 4fdw_A 204 GIEEVLLPVT-LKEIGSQAFLKTSQLKTIEIPEN-VSTIGQEAFRESGITTVKL-PNGVTNIASRAFYYCPELAEVTTYG 280 (401)
T ss_dssp CCSEEECCTT-CCEECTTTTTTCTTCCCEECCTT-CCEECTTTTTTCCCSEEEE-ETTCCEECTTTTTTCTTCCEEEEES
T ss_pred ccCEEEeCCc-hheehhhHhhCCCCCCEEecCCC-ccCccccccccCCccEEEe-CCCccEEChhHhhCCCCCCEEEeCC
Confidence 4777777643 666664 777778888888764 6777777776 67788877 44566654 577778888888877
Q ss_pred CCCc-----ccccc-ccCCCCCcEEEcCCCCCCCcc--cccCCCCCcEEECCCCccCccccchHhhhcCCCCcEEEccCC
Q 035577 451 NRIL-----RIGHG-LASCSSLKELYLAGNKISEVE--GLHRLLKLTVLDLRFNKISTAKCLGQLAANYNSLQAISLEGN 522 (662)
Q Consensus 451 N~Ls-----~Lp~~-l~~L~~L~~L~Ls~N~L~~l~--~l~~L~~L~~LdLs~N~Ls~l~~l~~~l~~l~~L~~L~Ls~N 522 (662)
|.+. .++.. |..|++|+.+.|. +.++.++ +|.+|.+|+.|.|..| ++.+. ..+|..+ +|+.|++.+|
T Consensus 281 ~~~~~~~~~~I~~~aF~~c~~L~~l~l~-~~i~~I~~~aF~~c~~L~~l~lp~~-l~~I~--~~aF~~~-~L~~l~l~~n 355 (401)
T 4fdw_A 281 STFNDDPEAMIHPYCLEGCPKLARFEIP-ESIRILGQGLLGGNRKVTQLTIPAN-VTQIN--FSAFNNT-GIKEVKVEGT 355 (401)
T ss_dssp SCCCCCTTCEECTTTTTTCTTCCEECCC-TTCCEECTTTTTTCCSCCEEEECTT-CCEEC--TTSSSSS-CCCEEEECCS
T ss_pred ccccCCcccEECHHHhhCCccCCeEEeC-CceEEEhhhhhcCCCCccEEEECcc-ccEEc--HHhCCCC-CCCEEEEcCC
Confidence 7665 45544 7777888888887 4466663 6777778888888544 66664 4566677 7888888877
Q ss_pred CCCC
Q 035577 523 PAQK 526 (662)
Q Consensus 523 ~l~~ 526 (662)
.+..
T Consensus 356 ~~~~ 359 (401)
T 4fdw_A 356 TPPQ 359 (401)
T ss_dssp SCCB
T ss_pred CCcc
Confidence 6543
No 146
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=98.91 E-value=1.9e-08 Score=109.53 Aligned_cols=223 Identities=13% Similarity=0.235 Sum_probs=150.1
Q ss_pred cccCCCCCccCCC--CCCCCCCceeecCCccCCCcchhhhcCCCCCCCCcccCCCCCCCCccCCcc---cCCCCCceeeC
Q 035577 282 VMPDENSVKKLQG--ESLHEQWDKLPSKHFKIKRIKEWVNDLQHCSPLEESDETSVSNDQVKRDPK---VLNGSTAVKVD 356 (662)
Q Consensus 282 L~ls~N~I~~L~~--~s~l~~L~~L~l~~~si~~L~~~~~~L~~l~~L~~L~~l~ls~n~L~~~p~---~l~~L~~L~l~ 356 (662)
+.+..+ ++.|.. |.. ..|+.+.+.+ +++.|.. .....|..|+.+.. ..+.+..++. ....|+.+.+.
T Consensus 140 i~l~~~-i~~I~~~aF~~-~~L~~i~lp~-~l~~I~~--~aF~~c~~L~~l~l---~~n~l~~I~~~aF~~~~L~~l~lp 211 (401)
T 4fdw_A 140 VVLNEG-LKSIGDMAFFN-STVQEIVFPS-TLEQLKE--DIFYYCYNLKKADL---SKTKITKLPASTFVYAGIEEVLLP 211 (401)
T ss_dssp EECCTT-CCEECTTTTTT-CCCCEEECCT-TCCEECS--STTTTCTTCCEEEC---TTSCCSEECTTTTTTCCCSEEECC
T ss_pred EEeCCC-ccEECHHhcCC-CCceEEEeCC-CccEehH--HHhhCcccCCeeec---CCCcceEechhhEeecccCEEEeC
Confidence 555444 666665 434 3566776654 4555543 23444555554333 2223322221 13556666665
Q ss_pred CccccchhhhHHHhhhccCCccEEEccCCCCCCCCC--CCCCCCCCEEEccCCCCcccCCCcCC--CCccEEEccCCCCC
Q 035577 357 GKVTAGMEAVTKYISSLSASATTVQLSNHGLVVIPF--LSAFVSLKVLNLSGNAIVRITAGALP--RGLHILNLSKNNIS 432 (662)
Q Consensus 357 ~~~~~~l~~l~~~l~~l~~sL~~L~Ls~N~L~~lp~--l~~L~~L~~L~Ls~N~L~~l~~~~~~--~~L~~L~Ls~N~L~ 432 (662)
.. +..+......-...|+.|.|..+ ++.|+. |.. .+|+.+.| .+.++.++..+|. .+|+.|.+.+|.+.
T Consensus 212 ~~----l~~I~~~aF~~~~~L~~l~l~~~-l~~I~~~aF~~-~~L~~i~l-p~~i~~I~~~aF~~c~~L~~l~l~~~~~~ 284 (401)
T 4fdw_A 212 VT----LKEIGSQAFLKTSQLKTIEIPEN-VSTIGQEAFRE-SGITTVKL-PNGVTNIASRAFYYCPELAEVTTYGSTFN 284 (401)
T ss_dssp TT----CCEECTTTTTTCTTCCCEECCTT-CCEECTTTTTT-CCCSEEEE-ETTCCEECTTTTTTCTTCCEEEEESSCCC
T ss_pred Cc----hheehhhHhhCCCCCCEEecCCC-ccCcccccccc-CCccEEEe-CCCccEEChhHhhCCCCCCEEEeCCcccc
Confidence 33 22222222222234888999874 777764 666 78999999 5668889888887 78999999998876
Q ss_pred -----CCc--CCCCCCCCCEEeCcCCCCcccccc-ccCCCCCcEEEcCCCCCCCc--ccccCCCCCcEEECCCCccCccc
Q 035577 433 -----TIE--GLRELTRLRVLDLSYNRILRIGHG-LASCSSLKELYLAGNKISEV--EGLHRLLKLTVLDLRFNKISTAK 502 (662)
Q Consensus 433 -----~lp--~l~~L~~L~~LdLs~N~Ls~Lp~~-l~~L~~L~~L~Ls~N~L~~l--~~l~~L~~L~~LdLs~N~Ls~l~ 502 (662)
.++ .|..+++|+.+.|. +.++.|+.. |..|.+|+.|.|..| ++.+ .+|..+ +|+.|++.+|.+..+.
T Consensus 285 ~~~~~~I~~~aF~~c~~L~~l~l~-~~i~~I~~~aF~~c~~L~~l~lp~~-l~~I~~~aF~~~-~L~~l~l~~n~~~~l~ 361 (401)
T 4fdw_A 285 DDPEAMIHPYCLEGCPKLARFEIP-ESIRILGQGLLGGNRKVTQLTIPAN-VTQINFSAFNNT-GIKEVKVEGTTPPQVF 361 (401)
T ss_dssp CCTTCEECTTTTTTCTTCCEECCC-TTCCEECTTTTTTCCSCCEEEECTT-CCEECTTSSSSS-CCCEEEECCSSCCBCC
T ss_pred CCcccEECHHHhhCCccCCeEEeC-CceEEEhhhhhcCCCCccEEEECcc-ccEEcHHhCCCC-CCCEEEEcCCCCcccc
Confidence 344 69999999999999 558888765 889999999999655 7776 378888 9999999999988875
Q ss_pred cchHhhhcCC-CCcEEEccCCCC
Q 035577 503 CLGQLAANYN-SLQAISLEGNPA 524 (662)
Q Consensus 503 ~l~~~l~~l~-~L~~L~Ls~N~l 524 (662)
...|..++ .+..|++..+.+
T Consensus 362 --~~~F~~~~~~l~~l~vp~~~~ 382 (401)
T 4fdw_A 362 --EKVWYGFPDDITVIRVPAESV 382 (401)
T ss_dssp --CSSCCCSCTTCCEEEECGGGH
T ss_pred --cccccCCCCCccEEEeCHHHH
Confidence 45566664 788999887754
No 147
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=98.65 E-value=1.3e-08 Score=104.87 Aligned_cols=107 Identities=17% Similarity=0.308 Sum_probs=82.0
Q ss_pred EeCcCCCCcccccc----ccCCCCCcEEEcCCCCCCCccc----ccCCCCCcEEECCCCccCccccchHhhhcCCCCcEE
Q 035577 446 LDLSYNRILRIGHG----LASCSSLKELYLAGNKISEVEG----LHRLLKLTVLDLRFNKISTAKCLGQLAANYNSLQAI 517 (662)
Q Consensus 446 LdLs~N~Ls~Lp~~----l~~L~~L~~L~Ls~N~L~~l~~----l~~L~~L~~LdLs~N~Ls~l~~l~~~l~~l~~L~~L 517 (662)
++++.|.+..++.. ..++++|+.|+|++|+|++++. +..+++|+.|+|++|+|+++..+.. +..+ +|++|
T Consensus 148 l~l~~N~~~~~~~~l~i~~~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~~~l~~-l~~l-~L~~L 225 (267)
T 3rw6_A 148 IDVVLNRRSCMAATLRIIEENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDK-IKGL-KLEEL 225 (267)
T ss_dssp CCCCTTSHHHHHHHHHHHHHHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSGGGGGG-GTTS-CCSEE
T ss_pred ccccCCHHHHHHHHHHHHHhhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCchhhhh-cccC-CcceE
Confidence 55666755544432 2467889999999998888754 3478999999999999998854433 3444 89999
Q ss_pred EccCCCCCCCCC-hHHHHHHHHhhCccCceeecCCCCC
Q 035577 518 SLEGNPAQKNVG-DEQLKKNLQSLLPHLVYFNWQPMKA 554 (662)
Q Consensus 518 ~Ls~N~l~~~~~-~~~l~~~l~~~l~~L~~Ld~~~~~~ 554 (662)
+|++|++++.++ ...|+..+...+|+|+.||...+.+
T Consensus 226 ~L~~Npl~~~~~~~~~y~~~il~~~P~L~~LDg~~v~p 263 (267)
T 3rw6_A 226 WLDGNSLCDTFRDQSTYISAIRERFPKLLRLDGHELPP 263 (267)
T ss_dssp ECTTSTTGGGCSSHHHHHHHHHHHCTTCCEESSCBCCC
T ss_pred EccCCcCccccCcchhHHHHHHHHCcccCeECCcCCCC
Confidence 999999987665 4578889999999999999987754
No 148
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=98.40 E-value=1.5e-07 Score=91.16 Aligned_cols=89 Identities=17% Similarity=0.163 Sum_probs=61.6
Q ss_pred CCCCCCCCEEeCcCCCCc-----cccccccCCCCCcEEEcCCCCCCCc------ccccCCCCCcEEEC--CCCccCcc--
Q 035577 437 LRELTRLRVLDLSYNRIL-----RIGHGLASCSSLKELYLAGNKISEV------EGLHRLLKLTVLDL--RFNKISTA-- 501 (662)
Q Consensus 437 l~~L~~L~~LdLs~N~Ls-----~Lp~~l~~L~~L~~L~Ls~N~L~~l------~~l~~L~~L~~LdL--s~N~Ls~l-- 501 (662)
+...++|++|+|++|.|. .+...+...+.|++|+|++|.|.+. ..+...+.|+.|+| ++|.|...
T Consensus 61 L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~~~N~i~~~g~ 140 (185)
T 1io0_A 61 LKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGILALVEALQSNTSLIELRIDNQSQPLGNNVE 140 (185)
T ss_dssp HTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHHHHHHGGGGCSSCCEEECCCCSSCCCHHHH
T ss_pred HHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHHHHHHHHHHHhCCCceEEEecCCCCCCCHHHH
Confidence 445567777777777776 2444455667788888888887752 35666777888888 77888763
Q ss_pred ccchHhhhcCCCCcEEEccCCCCC
Q 035577 502 KCLGQLAANYNSLQAISLEGNPAQ 525 (662)
Q Consensus 502 ~~l~~~l~~l~~L~~L~Ls~N~l~ 525 (662)
..+...+...++|++|+|++|.+.
T Consensus 141 ~~l~~~L~~n~~L~~L~L~~n~i~ 164 (185)
T 1io0_A 141 MEIANMLEKNTTLLKFGYHFTQQG 164 (185)
T ss_dssp HHHHHHHHHCSSCCEEECCCSSHH
T ss_pred HHHHHHHHhCCCcCEEeccCCCCC
Confidence 234556667788888888888764
No 149
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.37 E-value=2.5e-07 Score=99.41 Aligned_cols=132 Identities=19% Similarity=0.176 Sum_probs=76.0
Q ss_pred CCCCCCCCEEEccCCCCcccCCCcCCCCccEEEccCCCCCCC--cCC--CCCCCCCEEeCcC--CC------Cccccccc
Q 035577 393 LSAFVSLKVLNLSGNAIVRITAGALPRGLHILNLSKNNISTI--EGL--RELTRLRVLDLSY--NR------ILRIGHGL 460 (662)
Q Consensus 393 l~~L~~L~~L~Ls~N~L~~l~~~~~~~~L~~L~Ls~N~L~~l--p~l--~~L~~L~~LdLs~--N~------Ls~Lp~~l 460 (662)
+..+++|+.|+|++|.-..++.. ..++|+.|+|..+.++.- ..+ ..+++|+.|+|+. |. +..+...+
T Consensus 168 l~~~P~L~~L~L~g~~~l~l~~~-~~~~L~~L~L~~~~l~~~~l~~l~~~~lp~L~~L~L~~~~~~~~~~~~~~~l~~~l 246 (362)
T 2ra8_A 168 LDAMPLLNNLKIKGTNNLSIGKK-PRPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNVFRPLF 246 (362)
T ss_dssp HHTCTTCCEEEEECCBTCBCCSC-BCTTCSEEEEECSBCCHHHHHHHHHSBCTTCCEEEEECBCGGGTCCSCGGGTGGGS
T ss_pred HhcCCCCcEEEEeCCCCceeccc-cCCCCcEEEEecCCCChHHHHHHHHccCCCCcEEEEeccccccccchhHHHHHHHH
Confidence 34556666666666521122221 125677777766665531 122 2567777777753 11 22222222
Q ss_pred --cCCCCCcEEEcCCCCCCCc--cc---ccCCCCCcEEECCCCccCccc--cchHhhhcCCCCcEEEccCCCCC
Q 035577 461 --ASCSSLKELYLAGNKISEV--EG---LHRLLKLTVLDLRFNKISTAK--CLGQLAANYNSLQAISLEGNPAQ 525 (662)
Q Consensus 461 --~~L~~L~~L~Ls~N~L~~l--~~---l~~L~~L~~LdLs~N~Ls~l~--~l~~~l~~l~~L~~L~Ls~N~l~ 525 (662)
..+++|+.|+|.+|.+.+. .. ...+++|++|+|+.|.|++.. .+...+..+++|+.|+|++|.++
T Consensus 247 ~~~~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~i~ 320 (362)
T 2ra8_A 247 SKDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYLS 320 (362)
T ss_dssp CTTTCTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSBBCC
T ss_pred hcCCCCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCCCcCC
Confidence 2467888888888877642 11 134678888888888887632 22333355688888888888764
No 150
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.35 E-value=4.3e-07 Score=97.53 Aligned_cols=152 Identities=9% Similarity=0.149 Sum_probs=103.2
Q ss_pred hHHHhhhccCCccEEEccCCCCCCCCCCCCCCCCCEEEccCCCCcccCCCc----CCCCccEEEccC--CC------CCC
Q 035577 366 VTKYISSLSASATTVQLSNHGLVVIPFLSAFVSLKVLNLSGNAIVRITAGA----LPRGLHILNLSK--NN------IST 433 (662)
Q Consensus 366 l~~~l~~l~~sL~~L~Ls~N~L~~lp~l~~L~~L~~L~Ls~N~L~~l~~~~----~~~~L~~L~Ls~--N~------L~~ 433 (662)
+...+..+| .|+.|.|++|.-..++.+. +++|+.|+|..|.+..-.... -.++|+.|+|+. |. +..
T Consensus 164 L~~ll~~~P-~L~~L~L~g~~~l~l~~~~-~~~L~~L~L~~~~l~~~~l~~l~~~~lp~L~~L~L~~~~~~~~~~~~~~~ 241 (362)
T 2ra8_A 164 LSPVLDAMP-LLNNLKIKGTNNLSIGKKP-RPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNV 241 (362)
T ss_dssp CHHHHHTCT-TCCEEEEECCBTCBCCSCB-CTTCSEEEEECSBCCHHHHHHHHHSBCTTCCEEEEECBCGGGTCCSCGGG
T ss_pred HHHHHhcCC-CCcEEEEeCCCCceecccc-CCCCcEEEEecCCCChHHHHHHHHccCCCCcEEEEeccccccccchhHHH
Confidence 334555555 4999999988422455443 889999999998875322111 126899999863 22 111
Q ss_pred Cc-CC--CCCCCCCEEeCcCCCCcc-ccccc---cCCCCCcEEEcCCCCCCCc------ccccCCCCCcEEECCCCccCc
Q 035577 434 IE-GL--RELTRLRVLDLSYNRILR-IGHGL---ASCSSLKELYLAGNKISEV------EGLHRLLKLTVLDLRFNKIST 500 (662)
Q Consensus 434 lp-~l--~~L~~L~~LdLs~N~Ls~-Lp~~l---~~L~~L~~L~Ls~N~L~~l------~~l~~L~~L~~LdLs~N~Ls~ 500 (662)
+. .+ ..+++|++|+|.+|.+.. .+..+ ..+++|++|+|+.|.|.+. ..+..+++|+.|+|++|.|++
T Consensus 242 l~~~l~~~~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~i~d 321 (362)
T 2ra8_A 242 FRPLFSKDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYLSD 321 (362)
T ss_dssp TGGGSCTTTCTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSBBCCH
T ss_pred HHHHHhcCCCCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCCCcCCH
Confidence 21 12 357999999999999873 22222 3578999999999999873 244678999999999999986
Q ss_pred cccchHhhhc-CCCCcEEEccCCC
Q 035577 501 AKCLGQLAAN-YNSLQAISLEGNP 523 (662)
Q Consensus 501 l~~l~~~l~~-l~~L~~L~Ls~N~ 523 (662)
.. ...+.. + ...+++++|.
T Consensus 322 ~~--~~~l~~al--g~~~~~~~~~ 341 (362)
T 2ra8_A 322 EM--KKELQKSL--PMKIDVSDSQ 341 (362)
T ss_dssp HH--HHHHHHHC--CSEEECCSBC
T ss_pred HH--HHHHHHHc--CCEEEecCCc
Confidence 42 222222 3 4678999887
No 151
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=98.31 E-value=7.3e-07 Score=86.25 Aligned_cols=118 Identities=19% Similarity=0.209 Sum_probs=91.3
Q ss_pred CCCCCCCCEEeCcCC-CCc-----cccccccCCCCCcEEEcCCCCCCCc------ccccCCCCCcEEECCCCccCcc--c
Q 035577 437 LRELTRLRVLDLSYN-RIL-----RIGHGLASCSSLKELYLAGNKISEV------EGLHRLLKLTVLDLRFNKISTA--K 502 (662)
Q Consensus 437 l~~L~~L~~LdLs~N-~Ls-----~Lp~~l~~L~~L~~L~Ls~N~L~~l------~~l~~L~~L~~LdLs~N~Ls~l--~ 502 (662)
+...+.|++|+|++| .|. .+...+...++|++|+|++|.|.+. ..+...+.|++|+|++|.|.+. .
T Consensus 32 l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g~~ 111 (185)
T 1io0_A 32 QNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGIL 111 (185)
T ss_dssp HTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHH
T ss_pred HhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHHHH
Confidence 567789999999999 887 3555677889999999999999863 3466778999999999999973 3
Q ss_pred cchHhhhcCCCCcEEEc--cCCCCCCCCChHHHHHHHHhhCccCceeecCCCCCCc
Q 035577 503 CLGQLAANYNSLQAISL--EGNPAQKNVGDEQLKKNLQSLLPHLVYFNWQPMKAST 556 (662)
Q Consensus 503 ~l~~~l~~l~~L~~L~L--s~N~l~~~~~~~~l~~~l~~~l~~L~~Ld~~~~~~~~ 556 (662)
.+...+...++|++|+| ++|.+.... ...........+.|++|++..+.+..
T Consensus 112 ~l~~~L~~n~~L~~L~L~~~~N~i~~~g--~~~l~~~L~~n~~L~~L~L~~n~i~~ 165 (185)
T 1io0_A 112 ALVEALQSNTSLIELRIDNQSQPLGNNV--EMEIANMLEKNTTLLKFGYHFTQQGP 165 (185)
T ss_dssp HHHHGGGGCSSCCEEECCCCSSCCCHHH--HHHHHHHHHHCSSCCEEECCCSSHHH
T ss_pred HHHHHHHhCCCceEEEecCCCCCCCHHH--HHHHHHHHHhCCCcCEEeccCCCCCh
Confidence 45667788899999999 889986421 11223344567899999999887643
No 152
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=98.04 E-value=4.4e-06 Score=85.94 Aligned_cols=80 Identities=25% Similarity=0.378 Sum_probs=55.7
Q ss_pred CCCCCCEEeCcCCCCcccc---ccccCCCCCcEEEcCCCCCCCcccccCCC--CCcEEECCCCccCcc-----ccchHhh
Q 035577 439 ELTRLRVLDLSYNRILRIG---HGLASCSSLKELYLAGNKISEVEGLHRLL--KLTVLDLRFNKISTA-----KCLGQLA 508 (662)
Q Consensus 439 ~L~~L~~LdLs~N~Ls~Lp---~~l~~L~~L~~L~Ls~N~L~~l~~l~~L~--~L~~LdLs~N~Ls~l-----~~l~~~l 508 (662)
.+++|+.|+|++|.|+.++ ..+..+++|+.|+|++|+|+++..+..+. +|+.|+|++|.|..- ......+
T Consensus 168 ~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~~~l~~l~~l~L~~L~L~~Npl~~~~~~~~~y~~~il 247 (267)
T 3rw6_A 168 NIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGLKLEELWLDGNSLCDTFRDQSTYISAIR 247 (267)
T ss_dssp HCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSGGGGGGGTTSCCSEEECTTSTTGGGCSSHHHHHHHHH
T ss_pred hCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCchhhhhcccCCcceEEccCCcCccccCcchhHHHHHH
Confidence 4566777777777776543 44567788888888888888775554444 888888888888751 1123456
Q ss_pred hcCCCCcEEE
Q 035577 509 ANYNSLQAIS 518 (662)
Q Consensus 509 ~~l~~L~~L~ 518 (662)
..+++|+.||
T Consensus 248 ~~~P~L~~LD 257 (267)
T 3rw6_A 248 ERFPKLLRLD 257 (267)
T ss_dssp HHCTTCCEES
T ss_pred HHCcccCeEC
Confidence 7788888876
No 153
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=97.99 E-value=0.00017 Score=77.36 Aligned_cols=81 Identities=19% Similarity=0.354 Sum_probs=42.2
Q ss_pred CCCCCCCCEEeCcCCCCcccccc-ccCCCCCcEEEcCCCCCCCc--ccccCCCCCcEEECCCCccCccccchHhhhcCCC
Q 035577 437 LRELTRLRVLDLSYNRILRIGHG-LASCSSLKELYLAGNKISEV--EGLHRLLKLTVLDLRFNKISTAKCLGQLAANYNS 513 (662)
Q Consensus 437 l~~L~~L~~LdLs~N~Ls~Lp~~-l~~L~~L~~L~Ls~N~L~~l--~~l~~L~~L~~LdLs~N~Ls~l~~l~~~l~~l~~ 513 (662)
|..+..|+.+.+. +.++.|+.. |..+.+|+.+.|..+ ++.+ .+|.++.+|+.+.|..+ ++.+. ..+|.++.+
T Consensus 284 F~~c~~L~~i~l~-~~i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~C~~L~~i~ip~s-v~~I~--~~aF~~C~~ 358 (394)
T 4gt6_A 284 FMNCPALQDIEFS-SRITELPESVFAGCISLKSIDIPEG-ITQILDDAFAGCEQLERIAIPSS-VTKIP--ESAFSNCTA 358 (394)
T ss_dssp TTTCTTCCEEECC-TTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEECTT-CCBCC--GGGGTTCTT
T ss_pred cccccccccccCC-CcccccCceeecCCCCcCEEEeCCc-ccEehHhHhhCCCCCCEEEECcc-cCEEh--HhHhhCCCC
Confidence 4455555555553 334455443 555566666665433 4444 24555566666666432 44443 344555666
Q ss_pred CcEEEccCC
Q 035577 514 LQAISLEGN 522 (662)
Q Consensus 514 L~~L~Ls~N 522 (662)
|+.+++.+|
T Consensus 359 L~~i~~~~~ 367 (394)
T 4gt6_A 359 LNNIEYSGS 367 (394)
T ss_dssp CCEEEESSC
T ss_pred CCEEEECCc
Confidence 666666554
No 154
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=97.85 E-value=4e-05 Score=70.04 Aligned_cols=70 Identities=16% Similarity=0.075 Sum_probs=56.3
Q ss_pred EEEcCCCCCC--CcccccCCCCCcEEECCCCccCccccchHhhhcCCCCcEEEccCCCCCCCCChHHHHHHHHhh
Q 035577 468 ELYLAGNKIS--EVEGLHRLLKLTVLDLRFNKISTAKCLGQLAANYNSLQAISLEGNPAQKNVGDEQLKKNLQSL 540 (662)
Q Consensus 468 ~L~Ls~N~L~--~l~~l~~L~~L~~LdLs~N~Ls~l~~l~~~l~~l~~L~~L~Ls~N~l~~~~~~~~l~~~l~~~ 540 (662)
.++.+++.|+ .+|.- -..+|+.|+|++|+|+.++ +..|..+++|+.|+|.+|||.|+|...++..|+...
T Consensus 12 ~v~Cs~~~L~~~~vP~~-lp~~l~~L~Ls~N~l~~l~--~~~f~~l~~L~~L~L~~NP~~CdC~l~~l~~wl~~~ 83 (130)
T 3rfe_A 12 LVDCGRRGLTWASLPTA-FPVDTTELVLTGNNLTALP--PGLLDALPALRTAHLGANPWRCDCRLVPLRAWLAGR 83 (130)
T ss_dssp EEECCSSCCCTTTSCSC-CCTTCSEEECTTSCCSSCC--TTTGGGCTTCCEEECCSSCCBCSGGGHHHHHHHHTS
T ss_pred EEEeCCCCCccccCCCC-CCcCCCEEECCCCcCCccC--hhhhhhccccCEEEecCCCeeccCccHHHHHHHHhC
Confidence 5667777776 66521 1246889999999999886 567788999999999999999999999999888754
No 155
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=97.80 E-value=0.00027 Score=75.83 Aligned_cols=123 Identities=15% Similarity=0.237 Sum_probs=67.3
Q ss_pred CCCCCCCCEEEccCCCCcccCCCcCC--CCccEEEccCCCCCCCcCCCCCCCCCEEeCcCCCCcccccc-ccCCCCCcEE
Q 035577 393 LSAFVSLKVLNLSGNAIVRITAGALP--RGLHILNLSKNNISTIEGLRELTRLRVLDLSYNRILRIGHG-LASCSSLKEL 469 (662)
Q Consensus 393 l~~L~~L~~L~Ls~N~L~~l~~~~~~--~~L~~L~Ls~N~L~~lp~l~~L~~L~~LdLs~N~Ls~Lp~~-l~~L~~L~~L 469 (662)
+..+..|+.+.+..+ +..+....|. ..|+.+.+..+.+.. ..+..+.+|+.+.+..+ ++.|+.. |..+.+|+.+
T Consensus 249 f~~~~~l~~~~~~~~-~~~i~~~~F~~~~~l~~~~~~~~~i~~-~~F~~~~~L~~i~l~~~-i~~I~~~aF~~c~~L~~i 325 (394)
T 4fs7_A 249 FYGCTDLESISIQNN-KLRIGGSLFYNCSGLKKVIYGSVIVPE-KTFYGCSSLTEVKLLDS-VKFIGEEAFESCTSLVSI 325 (394)
T ss_dssp TTTCSSCCEEEECCT-TCEECSCTTTTCTTCCEEEECSSEECT-TTTTTCTTCCEEEECTT-CCEECTTTTTTCTTCCEE
T ss_pred ccccccceeEEcCCC-cceeeccccccccccceeccCceeecc-ccccccccccccccccc-cceechhhhcCCCCCCEE
Confidence 555666666666544 2334444444 455555554433221 13555666666666543 5555443 6666666666
Q ss_pred EcCCCCCCCcc--cccCCCCCcEEECCCCccCccccchHhhhcCCCCcEEEccCC
Q 035577 470 YLAGNKISEVE--GLHRLLKLTVLDLRFNKISTAKCLGQLAANYNSLQAISLEGN 522 (662)
Q Consensus 470 ~Ls~N~L~~l~--~l~~L~~L~~LdLs~N~Ls~l~~l~~~l~~l~~L~~L~Ls~N 522 (662)
+|..+ ++.+. +|.++.+|+.+.+..| ++.+. ..+|..+.+|+.++|..+
T Consensus 326 ~lp~~-v~~I~~~aF~~c~~L~~i~lp~~-l~~I~--~~aF~~C~~L~~i~lp~~ 376 (394)
T 4fs7_A 326 DLPYL-VEEIGKRSFRGCTSLSNINFPLS-LRKIG--ANAFQGCINLKKVELPKR 376 (394)
T ss_dssp CCCTT-CCEECTTTTTTCTTCCEECCCTT-CCEEC--TTTBTTCTTCCEEEEEGG
T ss_pred EeCCc-ccEEhHHhccCCCCCCEEEECcc-ccEeh--HHHhhCCCCCCEEEECCC
Confidence 66533 55552 5666666666666554 55553 445566666666666544
No 156
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=97.71 E-value=0.00084 Score=71.93 Aligned_cols=221 Identities=16% Similarity=0.202 Sum_probs=131.9
Q ss_pred ccCcccccccCCCCCccCCC--CCCCCCCceeecCCccCCCcchhhhcCCCCCCCCcccCCCCCCCCccCCcccCCCCCc
Q 035577 275 SALAKDWVMPDENSVKKLQG--ESLHEQWDKLPSKHFKIKRIKEWVNDLQHCSPLEESDETSVSNDQVKRDPKVLNGSTA 352 (662)
Q Consensus 275 ~~L~~~~L~ls~N~I~~L~~--~s~l~~L~~L~l~~~si~~L~~~~~~L~~l~~L~~L~~l~ls~n~L~~~p~~l~~L~~ 352 (662)
..|.. +.+.. .+..+.. |..+.+|+.+.+..+ ++.+... ....|..|..+.... ....+.........|+.
T Consensus 162 ~~L~~--i~l~~-~~~~I~~~~F~~c~~L~~i~l~~~-~~~I~~~--~F~~~~~L~~i~~~~-~~~~i~~~~~~~~~l~~ 234 (394)
T 4fs7_A 162 ESLEY--VSLPD-SMETLHNGLFSGCGKLKSIKLPRN-LKIIRDY--CFAECILLENMEFPN-SLYYLGDFALSKTGVKN 234 (394)
T ss_dssp TTCCE--EECCT-TCCEECTTTTTTCTTCCBCCCCTT-CCEECTT--TTTTCTTCCBCCCCT-TCCEECTTTTTTCCCCE
T ss_pred CCCcE--EecCC-ccceeccccccCCCCceEEEcCCC-ceEeCch--hhccccccceeecCC-CceEeehhhcccCCCce
Confidence 44444 44543 3455555 666777777776543 4444432 334455554433211 11112222112345666
Q ss_pred eeeCCccccchhhhHHHhhhccCCccEEEccCCCCCCCC--CCCCCCCCCEEEccCCCCcccCCCcCC--CCccEEEccC
Q 035577 353 VKVDGKVTAGMEAVTKYISSLSASATTVQLSNHGLVVIP--FLSAFVSLKVLNLSGNAIVRITAGALP--RGLHILNLSK 428 (662)
Q Consensus 353 L~l~~~~~~~l~~l~~~l~~l~~sL~~L~Ls~N~L~~lp--~l~~L~~L~~L~Ls~N~L~~l~~~~~~--~~L~~L~Ls~ 428 (662)
+.+..... .+..........++.+.+..+... +. .|..+..|+.+.+..+. ++...|. .+|+.+.+..
T Consensus 235 i~ip~~~~----~i~~~~f~~~~~l~~~~~~~~~~~-i~~~~F~~~~~l~~~~~~~~~---i~~~~F~~~~~L~~i~l~~ 306 (394)
T 4fs7_A 235 IIIPDSFT----ELGKSVFYGCTDLESISIQNNKLR-IGGSLFYNCSGLKKVIYGSVI---VPEKTFYGCSSLTEVKLLD 306 (394)
T ss_dssp EEECTTCC----EECSSTTTTCSSCCEEEECCTTCE-ECSCTTTTCTTCCEEEECSSE---ECTTTTTTCTTCCEEEECT
T ss_pred EEECCCce----ecccccccccccceeEEcCCCcce-eeccccccccccceeccCcee---ecccccccccccccccccc
Confidence 66543221 111111222234777887766443 33 27888888888877654 3444554 7889998876
Q ss_pred CCCCCCc--CCCCCCCCCEEeCcCCCCcccccc-ccCCCCCcEEEcCCCCCCCc--ccccCCCCCcEEECCCCccCcccc
Q 035577 429 NNISTIE--GLRELTRLRVLDLSYNRILRIGHG-LASCSSLKELYLAGNKISEV--EGLHRLLKLTVLDLRFNKISTAKC 503 (662)
Q Consensus 429 N~L~~lp--~l~~L~~L~~LdLs~N~Ls~Lp~~-l~~L~~L~~L~Ls~N~L~~l--~~l~~L~~L~~LdLs~N~Ls~l~~ 503 (662)
+ ++.++ .|..+.+|+.++|..+ ++.|+.. |.++.+|+.+.+..| ++.+ .+|.++.+|+.+++..+ ++.+
T Consensus 307 ~-i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~lp~~-~~~~-- 380 (394)
T 4fs7_A 307 S-VKFIGEEAFESCTSLVSIDLPYL-VEEIGKRSFRGCTSLSNINFPLS-LRKIGANAFQGCINLKKVELPKR-LEQY-- 380 (394)
T ss_dssp T-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTBTTCTTCCEEEEEGG-GGGG--
T ss_pred c-cceechhhhcCCCCCCEEEeCCc-ccEEhHHhccCCCCCCEEEECcc-ccEehHHHhhCCCCCCEEEECCC-CEEh--
Confidence 5 66664 6888899999999754 7778654 888999999999776 7766 37888999999988654 4433
Q ss_pred chHhhhcCCCCcEE
Q 035577 504 LGQLAANYNSLQAI 517 (662)
Q Consensus 504 l~~~l~~l~~L~~L 517 (662)
...|.++++|+.+
T Consensus 381 -~~~F~~c~~L~~I 393 (394)
T 4fs7_A 381 -RYDFEDTTKFKWI 393 (394)
T ss_dssp -GGGBCTTCEEEEE
T ss_pred -hheecCCCCCcEE
Confidence 4456777777654
No 157
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=97.66 E-value=0.00072 Score=72.44 Aligned_cols=123 Identities=15% Similarity=0.286 Sum_probs=89.8
Q ss_pred CCCCCCCCEEEccCCCCcccCCCcCC--CCccEEEccCCCCCCCc--CCCCCCCCCEEeCcCCCCcccccc-ccCCCCCc
Q 035577 393 LSAFVSLKVLNLSGNAIVRITAGALP--RGLHILNLSKNNISTIE--GLRELTRLRVLDLSYNRILRIGHG-LASCSSLK 467 (662)
Q Consensus 393 l~~L~~L~~L~Ls~N~L~~l~~~~~~--~~L~~L~Ls~N~L~~lp--~l~~L~~L~~LdLs~N~Ls~Lp~~-l~~L~~L~ 467 (662)
|..+..|+.+.+..+ +..+...+|. ..|+.+.+. +.++.++ .|..+.+|+.+.|..+ ++.|... |..|.+|+
T Consensus 261 F~~c~~L~~i~lp~~-~~~I~~~aF~~c~~L~~i~l~-~~i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~C~~L~ 337 (394)
T 4gt6_A 261 FDSCAYLASVKMPDS-VVSIGTGAFMNCPALQDIEFS-SRITELPESVFAGCISLKSIDIPEG-ITQILDDAFAGCEQLE 337 (394)
T ss_dssp TTTCSSCCEEECCTT-CCEECTTTTTTCTTCCEEECC-TTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCC
T ss_pred eeecccccEEecccc-cceecCcccccccccccccCC-CcccccCceeecCCCCcCEEEeCCc-ccEehHhHhhCCCCCC
Confidence 778889999998655 4567777776 789999996 5677775 6899999999999865 7888665 99999999
Q ss_pred EEEcCCCCCCCc--ccccCCCCCcEEECCCCccCccccchHhhhcCCCCcEEEccCCCC
Q 035577 468 ELYLAGNKISEV--EGLHRLLKLTVLDLRFNKISTAKCLGQLAANYNSLQAISLEGNPA 524 (662)
Q Consensus 468 ~L~Ls~N~L~~l--~~l~~L~~L~~LdLs~N~Ls~l~~l~~~l~~l~~L~~L~Ls~N~l 524 (662)
.+.|..+ ++.+ .+|.++.+|+.+++.+|... ...+..+..|+.|.+..|.+
T Consensus 338 ~i~ip~s-v~~I~~~aF~~C~~L~~i~~~~~~~~-----~~~~~~~~~L~~i~i~~~~~ 390 (394)
T 4gt6_A 338 RIAIPSS-VTKIPESAFSNCTALNNIEYSGSRSQ-----WNAISTDSGLQNLPVAPGSI 390 (394)
T ss_dssp EEEECTT-CCBCCGGGGTTCTTCCEEEESSCHHH-----HHTCBCCCCC----------
T ss_pred EEEECcc-cCEEhHhHhhCCCCCCEEEECCceee-----hhhhhccCCCCEEEeCCCCE
Confidence 9999654 7777 37999999999999987543 23345678899888877654
No 158
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=97.45 E-value=0.00023 Score=69.82 Aligned_cols=104 Identities=12% Similarity=0.085 Sum_probs=46.6
Q ss_pred CCccEEEccCC-CCCCC------cCCCCCCCCCEEeCcCCCCc-----cccccccCCCCCcEEEcCCCCCCCc------c
Q 035577 419 RGLHILNLSKN-NISTI------EGLRELTRLRVLDLSYNRIL-----RIGHGLASCSSLKELYLAGNKISEV------E 480 (662)
Q Consensus 419 ~~L~~L~Ls~N-~L~~l------p~l~~L~~L~~LdLs~N~Ls-----~Lp~~l~~L~~L~~L~Ls~N~L~~l------~ 480 (662)
+.|+.|+|++| .|..- ..+..-+.|+.|+|++|.|. .|...+...+.|+.|+|+.|.|... .
T Consensus 41 ~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~ala~ 120 (197)
T 1pgv_A 41 TDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARLLR 120 (197)
T ss_dssp SSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHHHH
T ss_pred CCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHHHHHH
Confidence 34555555553 44421 12344445555555555554 2223333445555555555555432 2
Q ss_pred cccCCCCCcEEECCCC---ccCcc--ccchHhhhcCCCCcEEEccCC
Q 035577 481 GLHRLLKLTVLDLRFN---KISTA--KCLGQLAANYNSLQAISLEGN 522 (662)
Q Consensus 481 ~l~~L~~L~~LdLs~N---~Ls~l--~~l~~~l~~l~~L~~L~Ls~N 522 (662)
.+...+.|+.|+|++| .|... ..+...+...+.|+.|+++.|
T Consensus 121 aL~~N~tL~~L~L~n~~~~~ig~~g~~~ia~aL~~N~tL~~L~l~~~ 167 (197)
T 1pgv_A 121 STLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFA 167 (197)
T ss_dssp HTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCC
T ss_pred HHhhCCceeEEECCCCcCcCcCHHHHHHHHHHHHhCCCcCeEeccCC
Confidence 3344444555555443 22221 122334444455555555443
No 159
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=97.38 E-value=0.0002 Score=68.99 Aligned_cols=100 Identities=17% Similarity=0.296 Sum_probs=56.0
Q ss_pred CCCEEeCcCCCCcccc-ccccCCCCCcEEEcCCCC-CCCc--ccccCC----CCCcEEECCCCc-cCccccchHhhhcCC
Q 035577 442 RLRVLDLSYNRILRIG-HGLASCSSLKELYLAGNK-ISEV--EGLHRL----LKLTVLDLRFNK-ISTAKCLGQLAANYN 512 (662)
Q Consensus 442 ~L~~LdLs~N~Ls~Lp-~~l~~L~~L~~L~Ls~N~-L~~l--~~l~~L----~~L~~LdLs~N~-Ls~l~~l~~~l~~l~ 512 (662)
.|+.|||+++.|+... ..+..+++|+.|+|++|. |++. ..+..+ ++|+.|+|++|. |++.. -..+..++
T Consensus 62 ~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~G--l~~L~~~~ 139 (176)
T 3e4g_A 62 KIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKG--IIALHHFR 139 (176)
T ss_dssp CEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHH--HHHGGGCT
T ss_pred eEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHH--HHHHhcCC
Confidence 4555555555544211 124556666666666663 5542 334443 367888887764 77642 12345678
Q ss_pred CCcEEEccCCCCCCCCChHHHHHHHHhhCccCc
Q 035577 513 SLQAISLEGNPAQKNVGDEQLKKNLQSLLPHLV 545 (662)
Q Consensus 513 ~L~~L~Ls~N~l~~~~~~~~l~~~l~~~l~~L~ 545 (662)
+|+.|+|++++-..+ ..-....+...+|+++
T Consensus 140 ~L~~L~L~~c~~Itd--~gl~~~~L~~~lP~l~ 170 (176)
T 3e4g_A 140 NLKYLFLSDLPGVKE--KEKIVQAFKTSLPSLE 170 (176)
T ss_dssp TCCEEEEESCTTCCC--HHHHHHHHHHHCTTCE
T ss_pred CCCEEECCCCCCCCc--hHHHHHHHHHHCCCcE
Confidence 888888888763321 1223455666777765
No 160
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=97.35 E-value=0.00015 Score=71.16 Aligned_cols=118 Identities=14% Similarity=0.104 Sum_probs=77.5
Q ss_pred CCCCCCCCEEeCcCC-CCc-----cccccccCCCCCcEEEcCCCCCCCc------ccccCCCCCcEEECCCCccCcc--c
Q 035577 437 LRELTRLRVLDLSYN-RIL-----RIGHGLASCSSLKELYLAGNKISEV------EGLHRLLKLTVLDLRFNKISTA--K 502 (662)
Q Consensus 437 l~~L~~L~~LdLs~N-~Ls-----~Lp~~l~~L~~L~~L~Ls~N~L~~l------~~l~~L~~L~~LdLs~N~Ls~l--~ 502 (662)
+..-+.|+.|+|++| .|. .|.+.+...+.|+.|+|++|.|.+. ..+...+.|+.|+|++|.|... .
T Consensus 37 l~~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~ 116 (197)
T 1pgv_A 37 REDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLA 116 (197)
T ss_dssp HTTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHH
T ss_pred HhcCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHH
Confidence 345577888888875 775 3455567778888888888888754 2456677888888888888863 3
Q ss_pred cchHhhhcCCCCcEEEccCCCCCCCCChH--HHHHHHHhhCccCceeecCCCCCC
Q 035577 503 CLGQLAANYNSLQAISLEGNPAQKNVGDE--QLKKNLQSLLPHLVYFNWQPMKAS 555 (662)
Q Consensus 503 ~l~~~l~~l~~L~~L~Ls~N~l~~~~~~~--~l~~~l~~~l~~L~~Ld~~~~~~~ 555 (662)
.+...+.....|+.|+|++|... .+... .........-+.|..|++..+...
T Consensus 117 ala~aL~~N~tL~~L~L~n~~~~-~ig~~g~~~ia~aL~~N~tL~~L~l~~~~~g 170 (197)
T 1pgv_A 117 RLLRSTLVTQSIVEFKADNQRQS-VLGNQVEMDMMMAIEENESLLRVGISFASME 170 (197)
T ss_dssp HHHHHTTTTCCCSEEECCCCSSC-CCCHHHHHHHHHHHHHCSSCCEEECCCCCHH
T ss_pred HHHHHHhhCCceeEEECCCCcCc-CcCHHHHHHHHHHHHhCCCcCeEeccCCCcc
Confidence 45566667778888888765320 11221 122333455677888887765543
No 161
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=97.23 E-value=0.00017 Score=69.50 Aligned_cols=98 Identities=14% Similarity=0.175 Sum_probs=68.7
Q ss_pred CCccEEEccCCCCCC--CcCCCCCCCCCEEeCcCCC-Ccccc-ccccCC----CCCcEEEcCCC-CCCCc--ccccCCCC
Q 035577 419 RGLHILNLSKNNIST--IEGLRELTRLRVLDLSYNR-ILRIG-HGLASC----SSLKELYLAGN-KISEV--EGLHRLLK 487 (662)
Q Consensus 419 ~~L~~L~Ls~N~L~~--lp~l~~L~~L~~LdLs~N~-Ls~Lp-~~l~~L----~~L~~L~Ls~N-~L~~l--~~l~~L~~ 487 (662)
..|+.|+|+++.|+. +..+..+++|+.|+|++|. |+.-. ..+..+ ++|+.|+|++| +|++- ..+..+++
T Consensus 61 ~~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~~ 140 (176)
T 3e4g_A 61 YKIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHFRN 140 (176)
T ss_dssp CCEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGCTT
T ss_pred ceEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcCCC
Confidence 468888888887764 4567889999999999985 66321 124443 47999999998 48764 57788999
Q ss_pred CcEEECCCCc-cCccc-cchHhhhcCCCCcE
Q 035577 488 LTVLDLRFNK-ISTAK-CLGQLAANYNSLQA 516 (662)
Q Consensus 488 L~~LdLs~N~-Ls~l~-~l~~~l~~l~~L~~ 516 (662)
|+.|+|+++. |++.. ....+-..+|+++.
T Consensus 141 L~~L~L~~c~~Itd~gl~~~~L~~~lP~l~V 171 (176)
T 3e4g_A 141 LKYLFLSDLPGVKEKEKIVQAFKTSLPSLEL 171 (176)
T ss_dssp CCEEEEESCTTCCCHHHHHHHHHHHCTTCEE
T ss_pred CCEEECCCCCCCCchHHHHHHHHHHCCCcEE
Confidence 9999999984 66632 11233345677653
No 162
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=97.09 E-value=0.0026 Score=67.39 Aligned_cols=124 Identities=21% Similarity=0.304 Sum_probs=71.2
Q ss_pred CCCCCCCCEEEccCCCCcccCCCcCC--CCccEEEccCCCCCCCc--CCCCCCCCCEEeCcCCCCcccccc-ccCCCCCc
Q 035577 393 LSAFVSLKVLNLSGNAIVRITAGALP--RGLHILNLSKNNISTIE--GLRELTRLRVLDLSYNRILRIGHG-LASCSSLK 467 (662)
Q Consensus 393 l~~L~~L~~L~Ls~N~L~~l~~~~~~--~~L~~L~Ls~N~L~~lp--~l~~L~~L~~LdLs~N~Ls~Lp~~-l~~L~~L~ 467 (662)
+.....|+.+.+..+ +..+....|. ..|+.+.+..+ ++.+. .|..+.+|+.+.+..+ +..++.. |..+.+|+
T Consensus 213 f~~~~~l~~i~~~~~-~~~i~~~~f~~~~~L~~i~lp~~-v~~I~~~aF~~~~~l~~i~l~~~-i~~i~~~aF~~c~~L~ 289 (379)
T 4h09_A 213 FSYGKNLKKITITSG-VTTLGDGAFYGMKALDEIAIPKN-VTSIGSFLLQNCTALKTLNFYAK-VKTVPYLLCSGCSNLT 289 (379)
T ss_dssp TTTCSSCSEEECCTT-CCEECTTTTTTCSSCCEEEECTT-CCEECTTTTTTCTTCCEEEECCC-CSEECTTTTTTCTTCC
T ss_pred cccccccceeeeccc-eeEEccccccCCccceEEEcCCC-ccEeCccccceeehhcccccccc-ceeccccccccccccc
Confidence 455556666665433 4445545444 55666666554 44443 4566666666666433 5555543 66666677
Q ss_pred EEEcCCCCCCCcc--cccCCCCCcEEECCCCccCccccchHhhhcCCCCcEEEccCC
Q 035577 468 ELYLAGNKISEVE--GLHRLLKLTVLDLRFNKISTAKCLGQLAANYNSLQAISLEGN 522 (662)
Q Consensus 468 ~L~Ls~N~L~~l~--~l~~L~~L~~LdLs~N~Ls~l~~l~~~l~~l~~L~~L~Ls~N 522 (662)
.+.+.++.++.++ +|.++.+|+.+.|..+ ++.+. ..+|.++.+|+.+.|..+
T Consensus 290 ~i~l~~~~i~~I~~~aF~~c~~L~~i~lp~~-l~~I~--~~aF~~C~~L~~i~ip~~ 343 (379)
T 4h09_A 290 KVVMDNSAIETLEPRVFMDCVKLSSVTLPTA-LKTIQ--VYAFKNCKALSTISYPKS 343 (379)
T ss_dssp EEEECCTTCCEECTTTTTTCTTCCEEECCTT-CCEEC--TTTTTTCTTCCCCCCCTT
T ss_pred cccccccccceehhhhhcCCCCCCEEEcCcc-ccEEH--HHHhhCCCCCCEEEECCc
Confidence 7776666666552 5666666777766543 55553 345566666666666443
No 163
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=97.07 E-value=0.0021 Score=68.10 Aligned_cols=128 Identities=12% Similarity=0.175 Sum_probs=91.7
Q ss_pred ccEEEccCCCCCCCCC--CCCCCCCCEEEccCCCCcccCCCcCC--CCccEEEccCCCCCCCc--CCCCCCCCCEEeCcC
Q 035577 377 ATTVQLSNHGLVVIPF--LSAFVSLKVLNLSGNAIVRITAGALP--RGLHILNLSKNNISTIE--GLRELTRLRVLDLSY 450 (662)
Q Consensus 377 L~~L~Ls~N~L~~lp~--l~~L~~L~~L~Ls~N~L~~l~~~~~~--~~L~~L~Ls~N~L~~lp--~l~~L~~L~~LdLs~ 450 (662)
++.+.+..+ ++.+.. +..+..|+.+.+..+ ++.+....|. ..|+.+.+..+ ++.++ .|..+.+|+.+.+..
T Consensus 219 l~~i~~~~~-~~~i~~~~f~~~~~L~~i~lp~~-v~~I~~~aF~~~~~l~~i~l~~~-i~~i~~~aF~~c~~L~~i~l~~ 295 (379)
T 4h09_A 219 LKKITITSG-VTTLGDGAFYGMKALDEIAIPKN-VTSIGSFLLQNCTALKTLNFYAK-VKTVPYLLCSGCSNLTKVVMDN 295 (379)
T ss_dssp CSEEECCTT-CCEECTTTTTTCSSCCEEEECTT-CCEECTTTTTTCTTCCEEEECCC-CSEECTTTTTTCTTCCEEEECC
T ss_pred cceeeeccc-eeEEccccccCCccceEEEcCCC-ccEeCccccceeehhcccccccc-ceeccccccccccccccccccc
Confidence 556666543 444443 777888888888765 7777777776 67888888654 55554 578888999999988
Q ss_pred CCCcccccc-ccCCCCCcEEEcCCCCCCCc--ccccCCCCCcEEECCCCccCccccchHhhhcC
Q 035577 451 NRILRIGHG-LASCSSLKELYLAGNKISEV--EGLHRLLKLTVLDLRFNKISTAKCLGQLAANY 511 (662)
Q Consensus 451 N~Ls~Lp~~-l~~L~~L~~L~Ls~N~L~~l--~~l~~L~~L~~LdLs~N~Ls~l~~l~~~l~~l 511 (662)
+.++.|+.. |.++.+|+.+.|..+ ++.+ .+|.++.+|+.+.+..+ ++.+. ..+|..+
T Consensus 296 ~~i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~ip~~-v~~I~--~~aF~~c 355 (379)
T 4h09_A 296 SAIETLEPRVFMDCVKLSSVTLPTA-LKTIQVYAFKNCKALSTISYPKS-ITLIE--SGAFEGS 355 (379)
T ss_dssp TTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCCCCCCTT-CCEEC--TTTTTTS
T ss_pred cccceehhhhhcCCCCCCEEEcCcc-ccEEHHHHhhCCCCCCEEEECCc-cCEEc--hhHhhCC
Confidence 888888765 888899999998654 6666 37888888988888654 66554 3344444
No 164
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=96.48 E-value=0.0038 Score=56.76 Aligned_cols=34 Identities=24% Similarity=0.250 Sum_probs=14.5
Q ss_pred CCEEeCcCCCCcccccc-ccCCCCCcEEEcCCCCC
Q 035577 443 LRVLDLSYNRILRIGHG-LASCSSLKELYLAGNKI 476 (662)
Q Consensus 443 L~~LdLs~N~Ls~Lp~~-l~~L~~L~~L~Ls~N~L 476 (662)
|++|+|++|.|+.||.. |..+++|+.|+|++|.+
T Consensus 33 l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~ 67 (130)
T 3rfe_A 33 TTELVLTGNNLTALPPGLLDALPALRTAHLGANPW 67 (130)
T ss_dssp CSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCC
T ss_pred CCEEECCCCcCCccChhhhhhccccCEEEecCCCe
Confidence 44444444444444333 33444444444444433
Done!