Query 035578
Match_columns 377
No_of_seqs 191 out of 1515
Neff 5.8
Searched_HMMs 46136
Date Fri Mar 29 04:13:06 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/035578.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/035578hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03030 cationic peroxidase; 100.0 8E-105 2E-109 779.5 25.5 297 41-374 23-324 (324)
2 cd00693 secretory_peroxidase H 100.0 2.6E-98 6E-103 730.8 24.9 298 42-373 1-298 (298)
3 PF00141 peroxidase: Peroxidas 100.0 2.1E-69 4.6E-74 510.7 7.6 228 59-337 1-230 (230)
4 PLN02608 L-ascorbate peroxidas 100.0 1.2E-66 2.5E-71 503.9 19.0 233 54-371 13-257 (289)
5 cd00691 ascorbate_peroxidase A 100.0 4.6E-64 1E-68 480.0 17.3 230 53-359 10-251 (253)
6 PLN02364 L-ascorbate peroxidas 100.0 9.7E-63 2.1E-67 469.6 17.9 230 46-359 4-248 (250)
7 cd00692 ligninase Ligninase an 100.0 8.4E-62 1.8E-66 477.6 20.6 238 55-376 16-289 (328)
8 PLN02879 L-ascorbate peroxidas 100.0 6.1E-61 1.3E-65 456.9 19.1 219 57-359 18-248 (251)
9 cd00314 plant_peroxidase_like 100.0 4.9E-57 1.1E-61 431.3 14.8 223 58-355 2-255 (255)
10 cd00649 catalase_peroxidase_1 100.0 1.5E-54 3.2E-59 433.1 21.0 262 57-364 45-401 (409)
11 TIGR00198 cat_per_HPI catalase 100.0 1.8E-51 3.9E-56 433.9 22.1 268 48-360 45-404 (716)
12 PRK15061 catalase/hydroperoxid 100.0 2E-48 4.4E-53 408.9 21.9 273 43-361 41-411 (726)
13 cd08201 plant_peroxidase_like_ 100.0 5.2E-47 1.1E-51 361.5 8.5 214 64-355 32-264 (264)
14 cd08200 catalase_peroxidase_2 100.0 5.2E-37 1.1E-41 296.3 15.4 221 61-357 17-296 (297)
15 TIGR00198 cat_per_HPI catalase 100.0 2.3E-32 5E-37 289.2 15.0 219 59-358 430-710 (716)
16 PRK15061 catalase/hydroperoxid 100.0 1.4E-31 3E-36 282.1 15.7 221 61-358 442-722 (726)
17 COG0376 KatG Catalase (peroxid 100.0 1.4E-28 2.9E-33 249.4 19.1 243 72-358 93-417 (730)
18 COG0376 KatG Catalase (peroxid 99.2 4.5E-11 9.8E-16 122.7 11.6 203 74-357 465-725 (730)
19 PTZ00411 transaldolase-like pr 51.9 1.1E+02 0.0025 31.0 9.7 66 138-203 161-231 (333)
20 PF11895 DUF3415: Domain of un 50.3 13 0.00029 30.0 2.3 18 341-358 2-19 (80)
21 PRK12346 transaldolase A; Prov 45.0 1.4E+02 0.0031 30.1 9.2 65 138-203 150-220 (316)
22 PRK12309 transaldolase/EF-hand 40.0 2.9E+02 0.0064 28.6 10.8 65 138-203 155-225 (391)
23 TIGR00874 talAB transaldolase. 32.4 3.6E+02 0.0078 27.2 9.8 67 138-205 149-221 (317)
24 PRK05269 transaldolase B; Prov 28.2 4.1E+02 0.009 26.7 9.4 97 138-250 151-255 (318)
25 cd00957 Transaldolase_TalAB Tr 26.8 2.2E+02 0.0048 28.6 7.2 68 138-206 149-222 (313)
26 PF15240 Pro-rich: Proline-ric 24.3 62 0.0013 30.1 2.5 17 7-23 2-18 (179)
27 COG3763 Uncharacterized protei 23.8 42 0.00091 26.5 1.1 29 58-86 24-52 (71)
28 KOG0427 Ubiquitin conjugating 20.2 1.4E+02 0.003 26.6 3.7 26 42-84 133-158 (161)
29 TIGR02738 TrbB type-F conjugat 20.2 94 0.002 27.7 2.8 10 45-54 55-64 (153)
No 1
>PLN03030 cationic peroxidase; Provisional
Probab=100.00 E-value=8.4e-105 Score=779.48 Aligned_cols=297 Identities=38% Similarity=0.734 Sum_probs=281.9
Q ss_pred CCCCcCccccCChhHHHHHHHHHHHHHhcCCCCCcceeeeeeccccccCCCceeeccCCCCCCCCCCccCCCCCCCCchH
Q 035578 41 LRLEYDYYRDKCPDAEKTVRSKMAQLYSQDKQVPANLLRLFFHDCFIMGCDASVFLDDSNGNESHPIERQAIPSQTLKGF 120 (377)
Q Consensus 41 ~~L~~~fY~~sCP~~e~iV~~~v~~~~~~d~~~a~~llRL~FHDcfv~GcDgSilLd~~~~~~~E~~~~~~~~N~~L~g~ 120 (377)
++|+++||++|||++|+||++.|++.+.+||+++|++|||+||||||+||||||||+++ ..||++ ++|.+|+||
T Consensus 23 ~~L~~~fY~~sCP~aE~iV~~~v~~~~~~d~~~aa~llRL~FHDCfv~GCDaSvLl~~~---~~Ek~a---~~N~~l~Gf 96 (324)
T PLN03030 23 QGTRVGFYSTTCPQAESIVRKTVQSHFQSNPAIAPGLLRMHFHDCFVRGCDASILIDGS---NTEKTA---LPNLLLRGY 96 (324)
T ss_pred ccCccchhhCcCCCHHHHHHHHHHHHHhhCcccchhhhhhhhhhheecCCceEEeeCCC---cccccC---CCCcCcchH
Confidence 46999999999999999999999999999999999999999999999999999999964 369999 999999999
Q ss_pred HHHHHHHHHHHhhCCCCCCHHHHHHhhhHhHHHhhCCCCcccccCccCCCCccccccccCCCCCCCCHHHHHHHHHHcCC
Q 035578 121 DKINLIKEELEEACPGMVSCADALALATRDGILLAGGPYYPVFTGRRDSIRSYFQEATAEIPGPDDDLNKILHLFSLRGF 200 (377)
Q Consensus 121 ~~I~~iK~~le~~cp~~VScADilalAar~av~~~GGP~~~v~~GRrD~~~s~~~~a~~~LP~p~~~~~~l~~~F~~~Gl 200 (377)
++|+.||++||++||++||||||||+||||||+++|||.|+|++||||+++|...++. +||.|+.++++|++.|+++||
T Consensus 97 ~~i~~iK~~~e~~CPg~VSCADilalAarDaV~~~gGP~~~v~~GRrDg~~s~~~~~~-~LP~p~~~~~~l~~~F~~~Gl 175 (324)
T PLN03030 97 DVIDDAKTQLEAACPGVVSCADILALAARDSVVLTNGLTWPVPTGRRDGRVSLASDAS-NLPGFTDSIDVQKQKFAAKGL 175 (324)
T ss_pred HHHHHHHHHHHhhCCCcccHHHHHHHHhhccccccCCCceeeeccccCCCCCCccccc-CCcCCCCCHHHHHHHHHHcCC
Confidence 9999999999999999999999999999999999999999999999999999877774 899999999999999999999
Q ss_pred CccccceeeccccccccccccccccccccCCCC-CCCCCCCHHHHHHHHhhcCCCCCCCCCCCCCCCCCCCCCCCCCccc
Q 035578 201 SPRETVSLIGAHNIGKISCQFIRNRLYDFLGTG-QPDPTMSDDFLVEMRVLCGDGNQTSLHGSPAPASAPAPMRSSGMRE 279 (377)
Q Consensus 201 s~~elVaLsGAHTiG~ahc~~f~~Rl~~~~g~~-~~dp~~d~~~~~~L~~~Cp~~~~~~~~~~~~~~~~~~~~~~r~~~~ 279 (377)
+.+|||+||||||||++||.+|.+|||||++++ .+||+||+.|+.+|++.||..+...
T Consensus 176 ~~~DlVaLsGAHTiG~ahC~~f~~Rlynf~~~~~~~Dp~~d~~~~~~L~~~Cp~~~~~~--------------------- 234 (324)
T PLN03030 176 NTQDLVTLVGGHTIGTTACQFFRYRLYNFTTTGNGADPSIDASFVPQLQALCPQNGDGS--------------------- 234 (324)
T ss_pred CHHHheeeeeccccceeeeeccccccccccCCCCCCCCchhHHHHHHHhccCCCCCCCC---------------------
Confidence 999999999999999999999999999999875 5899999999999999999532221
Q ss_pred cccccccccccccCCCCCCcccHHHHHHHhcCCccccchhhhccChhHHHHHHHHhhcchh----HHHHHHHHHHHHHHc
Q 035578 280 STLGMNYYQRLSTSISSGAGFDAHYYQNLLRGRGLLHADQQLMAEEKTAKLVWAYASDCGT----AYRTDFARVMLKMSN 355 (377)
Q Consensus 280 ~~~~~~lD~~~~~~~~Tp~~FDN~Yy~nl~~~~glL~SDq~L~~d~~T~~~V~~yA~d~~~----~F~~~Fa~Am~KM~~ 355 (377)
..++||+. ||.+|||+||+||+.++|+|+|||+|+.|++|+++|++||.| +. +||++|++||+|||+
T Consensus 235 --~~~~lD~~------Tp~~FDn~Yy~nll~~rGlL~SDq~L~~d~~T~~~V~~~A~~-~~~~~~~F~~~Fa~AmvKMg~ 305 (324)
T PLN03030 235 --RRIALDTG------SSNRFDASFFSNLKNGRGILESDQKLWTDASTRTFVQRFLGV-RGLAGLNFNVEFGRSMVKMSN 305 (324)
T ss_pred --ccccCCCC------CCcccccHHHHHHHhcCCCcCCchHhhcCccHHHHHHHHhcc-cccchhhhHHHHHHHHHHHcc
Confidence 35779988 999999999999999999999999999999999999999987 64 999999999999999
Q ss_pred CCCCCCCCCcccccccccC
Q 035578 356 LGVLSGSQGQVRTNCSLSL 374 (377)
Q Consensus 356 lgv~tg~~GEIR~~C~~vN 374 (377)
|+||||.+|||||+|+++|
T Consensus 306 i~VlTG~~GEIRk~C~~vN 324 (324)
T PLN03030 306 IGVKTGTNGEIRKVCSAIN 324 (324)
T ss_pred CCCCCCCCCceeccccccC
Confidence 9999999999999999998
No 2
>cd00693 secretory_peroxidase Horseradish peroxidase and related secretory plant peroxidases. Secretory peroxidases belong to class III of the plant heme-dependent peroxidase superfamily. All members of the superfamily share a heme prosthetic group and catalyze a multistep oxidative reaction involving hydrogen peroxide as the electron acceptor. Class III peroxidases are found in the extracellular space or in the vacuole in plants where they have been implicated in hydrogen peroxide detoxification, auxin catabolism and lignin biosynthesis, and stress response. Class III peroxidases contain four conserved disulphide bridges and two conserved calcium binding sites.
Probab=100.00 E-value=2.6e-98 Score=730.81 Aligned_cols=298 Identities=44% Similarity=0.793 Sum_probs=286.3
Q ss_pred CCCcCccccCChhHHHHHHHHHHHHHhcCCCCCcceeeeeeccccccCCCceeeccCCCCCCCCCCccCCCCCCCCchHH
Q 035578 42 RLEYDYYRDKCPDAEKTVRSKMAQLYSQDKQVPANLLRLFFHDCFIMGCDASVFLDDSNGNESHPIERQAIPSQTLKGFD 121 (377)
Q Consensus 42 ~L~~~fY~~sCP~~e~iV~~~v~~~~~~d~~~a~~llRL~FHDcfv~GcDgSilLd~~~~~~~E~~~~~~~~N~~L~g~~ 121 (377)
||+++||++|||++|+||+++|++.+.++++++|++|||+||||||+||||||||+++.+...|+++ ++|.+|+||+
T Consensus 1 ~L~~~~Y~~sCP~~e~iV~~~v~~~~~~~~~~a~~~lRl~FHDc~v~GcDaSill~~~~~~~~E~~~---~~N~~l~g~~ 77 (298)
T cd00693 1 QLSVGFYSKSCPNAESIVRSVVRAAVKADPRLAAALLRLHFHDCFVRGCDASVLLDSTANNTSEKDA---PPNLSLRGFD 77 (298)
T ss_pred CCCcccccCCCCChHHHHHHHHHHHHHhCCCcCchhhhhhhHhhhccCcceeEEecCCCCCchhccC---CCCCCcchhH
Confidence 5999999999999999999999999999999999999999999999999999999988777899999 9999999999
Q ss_pred HHHHHHHHHHhhCCCCCCHHHHHHhhhHhHHHhhCCCCcccccCccCCCCccccccccCCCCCCCCHHHHHHHHHHcCCC
Q 035578 122 KINLIKEELEEACPGMVSCADALALATRDGILLAGGPYYPVFTGRRDSIRSYFQEATAEIPGPDDDLNKILHLFSLRGFS 201 (377)
Q Consensus 122 ~I~~iK~~le~~cp~~VScADilalAar~av~~~GGP~~~v~~GRrD~~~s~~~~a~~~LP~p~~~~~~l~~~F~~~Gls 201 (377)
+|+.||+++|++||++||||||||||||+||+++|||.|+|++||+|+.++.+..+ ++||+|+.++++|++.|+++||+
T Consensus 78 ~i~~iK~~~e~~cp~~VScADiialAar~av~~~GGP~~~v~~GR~D~~~s~~~~~-~~lP~p~~~~~~l~~~F~~~G~~ 156 (298)
T cd00693 78 VIDDIKAALEAACPGVVSCADILALAARDAVVLAGGPSYEVPLGRRDGRVSSANDV-GNLPSPFFSVSQLISLFASKGLT 156 (298)
T ss_pred HHHHHHHHHHhhCCCcccHHHHHHHhhhhceeccCCCcccccCCCcCCcccCcccc-cCCCCcccCHHHHHHHHHHcCCC
Confidence 99999999999999999999999999999999999999999999999998877665 78999999999999999999999
Q ss_pred ccccceeeccccccccccccccccccccCCCCCCCCCCCHHHHHHHHhhcCCCCCCCCCCCCCCCCCCCCCCCCCccccc
Q 035578 202 PRETVSLIGAHNIGKISCQFIRNRLYDFLGTGQPDPTMSDDFLVEMRVLCGDGNQTSLHGSPAPASAPAPMRSSGMREST 281 (377)
Q Consensus 202 ~~elVaLsGAHTiG~ahc~~f~~Rl~~~~g~~~~dp~~d~~~~~~L~~~Cp~~~~~~~~~~~~~~~~~~~~~~r~~~~~~ 281 (377)
++|||||+||||||++||.+|.+|||+|+|++.+||+||+.|+..|++.||..+...
T Consensus 157 ~~d~VaL~GaHTiG~~hc~~f~~Rl~~f~g~~~~dp~~~~~~~~~L~~~Cp~~~~~~----------------------- 213 (298)
T cd00693 157 VTDLVALSGAHTIGRAHCSSFSDRLYNFSGTGDPDPTLDPAYAAQLRKKCPAGGDDD----------------------- 213 (298)
T ss_pred HHHheeecccceeeeeecccccccccCCCCCCCCCCCccHHHHHHhcCCCCCCCCCC-----------------------
Confidence 999999999999999999999999999999999999999999999999999643222
Q ss_pred cccccccccccCCCCCCcccHHHHHHHhcCCccccchhhhccChhHHHHHHHHhhcchhHHHHHHHHHHHHHHcCCCCCC
Q 035578 282 LGMNYYQRLSTSISSGAGFDAHYYQNLLRGRGLLHADQQLMAEEKTAKLVWAYASDCGTAYRTDFARVMLKMSNLGVLSG 361 (377)
Q Consensus 282 ~~~~lD~~~~~~~~Tp~~FDN~Yy~nl~~~~glL~SDq~L~~d~~T~~~V~~yA~d~~~~F~~~Fa~Am~KM~~lgv~tg 361 (377)
..++||+. ||.+|||+||++|+.++|+|+|||+|+.|++|+++|++||.| |++|+++|++||+||++|+|+||
T Consensus 214 ~~~~lD~~------Tp~~FDn~Yy~~l~~~~glL~SD~~L~~d~~t~~~V~~~A~d-~~~F~~~Fa~Am~Kl~~l~v~tg 286 (298)
T cd00693 214 TLVPLDPG------TPNTFDNSYYKNLLAGRGLLTSDQALLSDPRTRAIVNRYAAN-QDAFFRDFAAAMVKMGNIGVLTG 286 (298)
T ss_pred ccccCCCC------CCCccccHHHHHHHhcccCccCCHHhccCccHHHHHHHHhhC-HHHHHHHHHHHHHHHhhcCCccC
Confidence 46889987 999999999999999999999999999999999999999999 99999999999999999999999
Q ss_pred CCCccccccccc
Q 035578 362 SQGQVRTNCSLS 373 (377)
Q Consensus 362 ~~GEIR~~C~~v 373 (377)
.+|||||+|+++
T Consensus 287 ~~GeiR~~C~~~ 298 (298)
T cd00693 287 SQGEIRKNCRVV 298 (298)
T ss_pred CCCccCCccccC
Confidence 999999999975
No 3
>PF00141 peroxidase: Peroxidase; InterPro: IPR002016 Peroxidases are haem-containing enzymes that use hydrogen peroxide as the electron acceptor to catalyse a number of oxidative reactions. Most haem peroxidases follow the reaction scheme: Fe3+ + H2O2 --> [Fe4+=O]R' (Compound I) + H2O [Fe4+=O]R' + substrate --> [Fe4+=O]R (Compound II) + oxidised substrate [Fe4+=O]R + substrate --> Fe3+ + H2O + oxidised substrate In this mechanism, the enzyme reacts with one equivalent of H2O2 to give [Fe4+=O]R' (compound I). This is a two-electron oxidation/reduction reaction where H2O2 is reduced to water and the enzyme is oxidised. One oxidising equivalent resides on iron, giving the oxyferryl [] intermediate, while in many peroxidases the porphyrin (R) is oxidised to the porphyrin pi-cation radical (R'). Compound I then oxidises an organic substrate to give a substrate radical []. Haem peroxidases include two superfamilies: one found in bacteria, fungi, plants and the second found in animals. The first one can be viewed as consisting of 3 major classes []. Class I, the intracellular peroxidases, includes: yeast cytochrome c peroxidase (CCP), a soluble protein found in the mitochondrial electron transport chain, where it probably protects against toxic peroxides; ascorbate peroxidase (AP), the main enzyme responsible for hydrogen peroxide removal in chloroplasts and cytosol of higher plants; and bacterial catalase- peroxidases, exhibiting both peroxidase and catalase activities. It is thought that catalase-peroxidase provides protection to cells under oxidative stress []. Class II consists of secretory fungal peroxidases: ligninases, or lignin peroxidases (LiPs), and manganese-dependent peroxidases (MnPs). These are monomeric glycoproteins involved in the degradation of lignin. In MnP, Mn2+ serves as the reducing substrate []. Class II proteins contain four conserved disulphide bridges and two conserved calcium-binding sites. Class III consists of the secretory plant peroxidases, which have multiple tissue-specific functions: e.g., removal of hydrogen peroxide from chloroplasts and cytosol; oxidation of toxic compounds; biosynthesis of the cell wall; defence responses towards wounding; indole-3-acetic acid (IAA) catabolism; ethylene biosynthesis; and so on. Class III proteins are also monomeric glycoproteins, containing four conserved disulphide bridges and two calcium ions, although the placement of the disulphides differs from class II enzymes. The crystal structures of a number of these proteins show that they share the same architecture - two all-alpha domains between which the haem group is embedded. ; GO: 0004601 peroxidase activity, 0020037 heme binding, 0006979 response to oxidative stress, 0055114 oxidation-reduction process; PDB: 1QPA_B 2DV2_A 2B2R_B 1MWV_B 2FXJ_A 2FXG_A 2B2O_B 1X7U_B 2B2Q_A 2FXH_A ....
Probab=100.00 E-value=2.1e-69 Score=510.68 Aligned_cols=228 Identities=44% Similarity=0.791 Sum_probs=207.9
Q ss_pred HHHHHHHHHhcCCCCCcceeeeeeccccc-cCCCceeeccCCCCCCCCCCccCCCCCCCCc-hHHHHHHHHHHHHhhCCC
Q 035578 59 VRSKMAQLYSQDKQVPANLLRLFFHDCFI-MGCDASVFLDDSNGNESHPIERQAIPSQTLK-GFDKINLIKEELEEACPG 136 (377)
Q Consensus 59 V~~~v~~~~~~d~~~a~~llRL~FHDcfv-~GcDgSilLd~~~~~~~E~~~~~~~~N~~L~-g~~~I~~iK~~le~~cp~ 136 (377)
||+.|++.+.++++++|++|||+|||||+ +|||||||+. ..|+++ ++|.+|+ ++++|+.||+++|++||+
T Consensus 1 Vr~~v~~~~~~~~~~~~~~lRl~FHDc~~~~GcDgSil~~-----~~e~~~---~~N~gl~~~~~~i~~ik~~~~~~cp~ 72 (230)
T PF00141_consen 1 VRSDVRAAFKKDPTLAPGLLRLAFHDCFVYGGCDGSILLF-----SAEKDA---PPNRGLRDGFDVIDPIKAKLEAACPG 72 (230)
T ss_dssp HHHHHHHHHHHHTTSHHHHHHHHHHHHTTHTSSSSGGGGS-----TTGGGS---GGGTTHHHHHHHHHHHHHHHCHHSTT
T ss_pred CHHHHHHHHHHCcCccHHHHHHHccccccccccccceecc-----cccccc---ccccCcceeeechhhHHhhhcccccC
Confidence 79999999999999999999999999999 9999999983 379999 9999997 999999999999999999
Q ss_pred CCCHHHHHHhhhHhHHHhhCCCCcccccCccCCCCccccccccCCCCCCCCHHHHHHHHHHcCCCccccceeeccccccc
Q 035578 137 MVSCADALALATRDGILLAGGPYYPVFTGRRDSIRSYFQEATAEIPGPDDDLNKILHLFSLRGFSPRETVSLIGAHNIGK 216 (377)
Q Consensus 137 ~VScADilalAar~av~~~GGP~~~v~~GRrD~~~s~~~~a~~~LP~p~~~~~~l~~~F~~~Gls~~elVaLsGAHTiG~ 216 (377)
+|||||||+|||++||+.+|||.|+|++||+|+.+++..++ .+||.|+.++++|++.|+++||+++|||||+||||||+
T Consensus 73 ~VS~ADiialAa~~av~~~GGP~~~v~~GR~D~~~s~~~~~-~~lP~p~~~~~~l~~~F~~~Gls~~e~VaLsGaHTiG~ 151 (230)
T PF00141_consen 73 VVSCADIIALAARDAVELCGGPRIPVPLGRRDGTVSSPSGA-SNLPSPTDSVDQLLAFFARKGLSAEEMVALSGAHTIGR 151 (230)
T ss_dssp TS-HHHHHHHHHHHHHHHTTGGHSHBEB-EBB-SSGGHHHH-HHSSTTTSHHHHHHHHHHHTT--HHHHHHHHGGGGSTE
T ss_pred CCCHHHHHHHHhhhccccccccccccccccccccccccccc-ccccccccccchhhhhhhccccchhhhcceeccccccc
Confidence 99999999999999999999999999999999999999777 78999999999999999999999999999999999999
Q ss_pred cccccccccccccCCCCCCCCCCCHHHHHHHHhhcCCCCCCCCCCCCCCCCCCCCCCCCCccccccccccccccccCCCC
Q 035578 217 ISCQFIRNRLYDFLGTGQPDPTMSDDFLVEMRVLCGDGNQTSLHGSPAPASAPAPMRSSGMRESTLGMNYYQRLSTSISS 296 (377)
Q Consensus 217 ahc~~f~~Rl~~~~g~~~~dp~~d~~~~~~L~~~Cp~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~lD~~~~~~~~T 296 (377)
+||.+|. ||| + .+||+||+.|+.. .| ..++. ..+++| |
T Consensus 152 ~~c~~f~-rl~-~----~~dp~~d~~~~~~---~C-~~~~~------------------------~~~~~d--------t 189 (230)
T PF00141_consen 152 AHCSSFS-RLY-F----PPDPTMDPGYAGQ---NC-NSGGD------------------------NGVPLD--------T 189 (230)
T ss_dssp ESGGCTG-GTS-C----SSGTTSTHHHHHH---SS-STSGC------------------------TCEESS--------S
T ss_pred ceecccc-ccc-c----cccccccccccee---cc-CCCcc------------------------cccccc--------C
Confidence 9999999 999 4 6799999999988 99 33222 245555 7
Q ss_pred CCcccHHHHHHHhcCCccccchhhhccChhHHHHHHHHhhc
Q 035578 297 GAGFDAHYYQNLLRGRGLLHADQQLMAEEKTAKLVWAYASD 337 (377)
Q Consensus 297 p~~FDN~Yy~nl~~~~glL~SDq~L~~d~~T~~~V~~yA~d 337 (377)
|.+|||+||++|+.++|+|+|||+|+.|++|+++|++||+|
T Consensus 190 p~~fDN~Yy~~ll~~~gll~SD~~L~~d~~t~~~V~~yA~d 230 (230)
T PF00141_consen 190 PTVFDNSYYKNLLNGRGLLPSDQALLNDPETRPIVERYAQD 230 (230)
T ss_dssp TTS-SSHHHHHHHHTEEEEHHHHHHHHSTTHHHHHHHHHHT
T ss_pred CCcchhHHHHHHhcCCCcCHHHHHHhcCHHHHHHHHHHhcC
Confidence 99999999999999999999999999999999999999986
No 4
>PLN02608 L-ascorbate peroxidase
Probab=100.00 E-value=1.2e-66 Score=503.90 Aligned_cols=233 Identities=26% Similarity=0.387 Sum_probs=209.2
Q ss_pred hHHHHHHHHHHHHHhcCCCCCcceeeeeecccc-------ccCCCceeeccCCCCCCCCCCccCCCCCCCC-chHHHHHH
Q 035578 54 DAEKTVRSKMAQLYSQDKQVPANLLRLFFHDCF-------IMGCDASVFLDDSNGNESHPIERQAIPSQTL-KGFDKINL 125 (377)
Q Consensus 54 ~~e~iV~~~v~~~~~~d~~~a~~llRL~FHDcf-------v~GcDgSilLd~~~~~~~E~~~~~~~~N~~L-~g~~~I~~ 125 (377)
+++.+ +++| ..+.++|.++|.+|||+||||| ++||||||++. .|+++ ++|.|| +||++|+.
T Consensus 13 ~~~~~-~~~~-~~~~~d~~~a~~llRLaFHDc~t~d~~~~~gGcDgSIll~------~E~~~---~~N~gL~~g~~vid~ 81 (289)
T PLN02608 13 EIEKA-RRDL-RALIASKNCAPIMLRLAWHDAGTYDAKTKTGGPNGSIRNE------EEYSH---GANNGLKIAIDLCEP 81 (289)
T ss_pred HHHHH-HHHH-HHHHHCCCcHHHHHHHhhhhcCCcCCCCCCCCCCeeeecc------cccCC---ccccchHHHHHHHHH
Confidence 35544 4555 4467799999999999999999 89999999984 59999 999999 69999999
Q ss_pred HHHHHHhhCCCCCCHHHHHHhhhHhHHHhhCCCCcccccCccCCCCccccccccCCCCCCCCHHHHHHHHHHcCCCcccc
Q 035578 126 IKEELEEACPGMVSCADALALATRDGILLAGGPYYPVFTGRRDSIRSYFQEATAEIPGPDDDLNKILHLFSLRGFSPRET 205 (377)
Q Consensus 126 iK~~le~~cp~~VScADilalAar~av~~~GGP~~~v~~GRrD~~~s~~~~a~~~LP~p~~~~~~l~~~F~~~Gls~~el 205 (377)
||+++ ++|||||||+||||+||+.+|||.|+|++||+|+.+++ ++++||+|+.+++++++.|+++||+++||
T Consensus 82 iK~~~-----~~VScADilalAardAV~~~GGP~~~v~~GR~D~~~s~---~~~~LP~p~~~~~~l~~~F~~~Gl~~~D~ 153 (289)
T PLN02608 82 VKAKH-----PKITYADLYQLAGVVAVEVTGGPTIDFVPGRKDSNACP---EEGRLPDAKKGAKHLRDVFYRMGLSDKDI 153 (289)
T ss_pred HHHHc-----CCcCHHHHHHHHHHHHHHhcCCCccCCCCCCCCCCcCC---ccCCCcCCCCCHHHHHHHHHHcCCCHHHH
Confidence 99987 48999999999999999999999999999999999986 34689999999999999999999999999
Q ss_pred ceeeccccccccccccccccccccCCCCCCCCCCCHHHHHHHHhhcCCCCCCCCCCCCCCCCCCCCCCCCCccccccccc
Q 035578 206 VSLIGAHNIGKISCQFIRNRLYDFLGTGQPDPTMSDDFLVEMRVLCGDGNQTSLHGSPAPASAPAPMRSSGMRESTLGMN 285 (377)
Q Consensus 206 VaLsGAHTiG~ahc~~f~~Rl~~~~g~~~~dp~~d~~~~~~L~~~Cp~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~ 285 (377)
|+|+||||||++||. |+ +|.| .+
T Consensus 154 VaLsGAHTiG~ahc~----r~-g~~g------------------------~~---------------------------- 176 (289)
T PLN02608 154 VALSGGHTLGRAHPE----RS-GFDG------------------------PW---------------------------- 176 (289)
T ss_pred hhhcccccccccccc----CC-CCCC------------------------CC----------------------------
Confidence 999999999999995 54 3211 01
Q ss_pred cccccccCCCCCCcccHHHHHHHhcC--Ccc--ccchhhhccChhHHHHHHHHhhcchhHHHHHHHHHHHHHHcCCCCCC
Q 035578 286 YYQRLSTSISSGAGFDAHYYQNLLRG--RGL--LHADQQLMAEEKTAKLVWAYASDCGTAYRTDFARVMLKMSNLGVLSG 361 (377)
Q Consensus 286 lD~~~~~~~~Tp~~FDN~Yy~nl~~~--~gl--L~SDq~L~~d~~T~~~V~~yA~d~~~~F~~~Fa~Am~KM~~lgv~tg 361 (377)
+ . ||.+|||+||++|+.+ +|+ |+|||+|+.|++|+++|+.||.| |++|+++|++||+|||+|+|+||
T Consensus 177 -~-~------Tp~~FDN~Yy~~ll~~~~~gll~L~SD~~L~~d~~T~~~V~~fA~~-~~~F~~~Fa~Am~Km~~lgvltg 247 (289)
T PLN02608 177 -T-K------EPLKFDNSYFVELLKGESEGLLKLPTDKALLEDPEFRPYVELYAKD-EDAFFRDYAESHKKLSELGFTPP 247 (289)
T ss_pred -C-C------CCCccChHHHHHHHcCCcCCccccccCHhhhcChhHHHHHHHHhhC-HHHHHHHHHHHHHHHHcCCCCCC
Confidence 1 2 8999999999999999 788 79999999999999999999999 99999999999999999999999
Q ss_pred CCCccccccc
Q 035578 362 SQGQVRTNCS 371 (377)
Q Consensus 362 ~~GEIR~~C~ 371 (377)
++||+.+.-+
T Consensus 248 ~~Ge~~~~~~ 257 (289)
T PLN02608 248 SSAFKKKSTS 257 (289)
T ss_pred CCCcccccCc
Confidence 9999988654
No 5
>cd00691 ascorbate_peroxidase Ascorbate peroxidases and cytochrome C peroxidases. Ascorbate peroxidases are a subgroup of heme-dependent peroxidases of the plant superfamily that share a heme prosthetic group and catalyze a multistep oxidative reaction involving hydrogen peroxide as the electron acceptor. Along with related catalase-peroxidases, ascorbate peroxidases belong to class I of the plant superfamily. Ascorbate peroxidases are found in the chloroplasts and/or cytosol of algae and plants, where they have been shown to control the concentration of lethal hydrogen peroxide molecules. The yeast cytochrome c peroxidase is a divergent member of the family; it forms a complex with cytochrome c to catalyze the reduction of hydrogen peroxide to water.
Probab=100.00 E-value=4.6e-64 Score=479.98 Aligned_cols=230 Identities=27% Similarity=0.368 Sum_probs=208.0
Q ss_pred hhHHHHHHHHHHHHHhcCCCCCcceeeeeeccccccCCCceeeccCCC---CCCCCCCccCCCCCCCC-chHHHHHHHHH
Q 035578 53 PDAEKTVRSKMAQLYSQDKQVPANLLRLFFHDCFIMGCDASVFLDDSN---GNESHPIERQAIPSQTL-KGFDKINLIKE 128 (377)
Q Consensus 53 P~~e~iV~~~v~~~~~~d~~~a~~llRL~FHDcfv~GcDgSilLd~~~---~~~~E~~~~~~~~N~~L-~g~~~I~~iK~ 128 (377)
-..++||++.|++.++ +++++|++|||+|||||+ ||+|+++++.. .+.+|+++ ++|.+| +||++|++||+
T Consensus 10 ~~~~~~V~~~v~~~~~-~~~~~~~llRl~FHDc~~--~d~s~~~~G~d~s~~~~~E~~~---~~N~~L~~~~~~i~~iK~ 83 (253)
T cd00691 10 AKDLEAARNDIAKLID-DKNCAPILVRLAWHDSGT--YDKETKTGGSNGTIRFDPELNH---GANAGLDIARKLLEPIKK 83 (253)
T ss_pred HHHHHHHHHHHHHHHH-cCCcHHHHHHHHHHHHhc--cccccCCCCCCccccchhhcCC---ccccchHHHHHHHHHHHH
Confidence 3568899999999999 999999999999999994 88888775432 23469999 999999 89999999999
Q ss_pred HHHhhCCCCCCHHHHHHhhhHhHHHhhCCCCcccccCccCCCCccccccccCCCCCCCCHHHHHHHHHHcCCCcccccee
Q 035578 129 ELEEACPGMVSCADALALATRDGILLAGGPYYPVFTGRRDSIRSYFQEATAEIPGPDDDLNKILHLFSLRGFSPRETVSL 208 (377)
Q Consensus 129 ~le~~cp~~VScADilalAar~av~~~GGP~~~v~~GRrD~~~s~~~~a~~~LP~p~~~~~~l~~~F~~~Gls~~elVaL 208 (377)
++ | +|||||||+||||+||+.+|||.|+|++||+|+.++....++++||.|+.++++|++.|+++||+++|||+|
T Consensus 84 ~~----~-~VScADilalAar~Av~~~GGP~~~v~~GR~D~~~s~~~~~~~~lP~p~~~~~~l~~~F~~~Gls~~d~VaL 158 (253)
T cd00691 84 KY----P-DISYADLWQLAGVVAIEEMGGPKIPFRPGRVDASDPEECPPEGRLPDASKGADHLRDVFYRMGFNDQEIVAL 158 (253)
T ss_pred Hc----C-CCCHHHHHHHHHHHHHHHcCCCccCcccCCCCCCcccccCcccCCCCCCCCHHHHHHHHHhcCCCHHHHHHh
Confidence 76 4 799999999999999999999999999999999999877778899999999999999999999999999999
Q ss_pred eccccccccccccccccccccCCCCCCCCCCCHHHHHHHHhhcCCCCCCCCCCCCCCCCCCCCCCCCCcccccccccccc
Q 035578 209 IGAHNIGKISCQFIRNRLYDFLGTGQPDPTMSDDFLVEMRVLCGDGNQTSLHGSPAPASAPAPMRSSGMRESTLGMNYYQ 288 (377)
Q Consensus 209 sGAHTiG~ahc~~f~~Rl~~~~g~~~~dp~~d~~~~~~L~~~Cp~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~lD~ 288 (377)
+||||||++||.. ++|.| .+.
T Consensus 159 sGaHTiG~a~c~~-----~~~~g------------------------~~~------------------------------ 179 (253)
T cd00691 159 SGAHTLGRCHKER-----SGYDG------------------------PWT------------------------------ 179 (253)
T ss_pred cccceeecccccC-----CCCCC------------------------CCC------------------------------
Confidence 9999999999953 12211 000
Q ss_pred ccccCCCCCCcccHHHHHHHhcCCc--------cccchhhhccChhHHHHHHHHhhcchhHHHHHHHHHHHHHHcCCCC
Q 035578 289 RLSTSISSGAGFDAHYYQNLLRGRG--------LLHADQQLMAEEKTAKLVWAYASDCGTAYRTDFARVMLKMSNLGVL 359 (377)
Q Consensus 289 ~~~~~~~Tp~~FDN~Yy~nl~~~~g--------lL~SDq~L~~d~~T~~~V~~yA~d~~~~F~~~Fa~Am~KM~~lgv~ 359 (377)
. ||.+|||+||++|+.++| +|+|||+|+.|++|+.+|+.||.| +++|+++|++||+||++|+|.
T Consensus 180 ~------tp~~FDn~Yy~~ll~~~g~~~~~~~~~L~sD~~L~~d~~t~~~v~~~a~~-~~~F~~~Fa~Am~Km~~l~v~ 251 (253)
T cd00691 180 K------NPLKFDNSYFKELLEEDWKLPTPGLLMLPTDKALLEDPKFRPYVELYAKD-QDAFFKDYAEAHKKLSELGVP 251 (253)
T ss_pred C------CCCcccHHHHHHHhcCCCccCcCcceechhhHHHHcCccHHHHHHHHhhC-HHHHHHHHHHHHHHHHhcCCC
Confidence 2 899999999999999999 999999999999999999999999 999999999999999999986
No 6
>PLN02364 L-ascorbate peroxidase 1
Probab=100.00 E-value=9.7e-63 Score=469.64 Aligned_cols=230 Identities=27% Similarity=0.453 Sum_probs=206.2
Q ss_pred Cccc--cCChhHHHHHHHHHHHHHhcCCCCCcceeeeeec-----ccccc--CCCceeeccCCCCCCCCCCccCCCCCCC
Q 035578 46 DYYR--DKCPDAEKTVRSKMAQLYSQDKQVPANLLRLFFH-----DCFIM--GCDASVFLDDSNGNESHPIERQAIPSQT 116 (377)
Q Consensus 46 ~fY~--~sCP~~e~iV~~~v~~~~~~d~~~a~~llRL~FH-----Dcfv~--GcDgSilLd~~~~~~~E~~~~~~~~N~~ 116 (377)
+||. +-|+.+++.|++.+++.+ .+++++|.+|||+|| ||+++ ||||||.. ..|+++ ++|.+
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~a~~~lRl~FHd~~t~dc~~~~GG~dgSi~~------~~E~~~---~~N~g 73 (250)
T PLN02364 4 NYPTVSEDYKKAVEKCRRKLRGLI-AEKNCAPIMVRLAWHSAGTFDCQSRTGGPFGTMRF------DAEQAH---GANSG 73 (250)
T ss_pred CCCCccHHHHHHHHHHHHHHHHHH-hCCCcHHHHHHHHHccccCcCcCCCCCCCCccccc------cccccC---CCccC
Confidence 4565 448899999999999988 789999999999999 88876 99999953 369999 99999
Q ss_pred C-chHHHHHHHHHHHHhhCCCCCCHHHHHHhhhHhHHHhhCCCCcccccCccCCCCccccccccCCCCCCCCHHHHHHHH
Q 035578 117 L-KGFDKINLIKEELEEACPGMVSCADALALATRDGILLAGGPYYPVFTGRRDSIRSYFQEATAEIPGPDDDLNKILHLF 195 (377)
Q Consensus 117 L-~g~~~I~~iK~~le~~cp~~VScADilalAar~av~~~GGP~~~v~~GRrD~~~s~~~~a~~~LP~p~~~~~~l~~~F 195 (377)
| +||++|+.||+++ ++|||||||+||||+||+++|||.|+|++||+|+.++++ +++||.|+.++++|++.|
T Consensus 74 l~~~~~~i~~ik~~~-----~~VScADilalAardAV~~~GGP~~~v~~GR~D~~~s~~---~~~lP~p~~~~~~l~~~F 145 (250)
T PLN02364 74 IHIALRLLDPIREQF-----PTISFADFHQLAGVVAVEVTGGPDIPFHPGREDKPQPPP---EGRLPDATKGCDHLRDVF 145 (250)
T ss_pred HHHHHHHHHHHHHHc-----CCcCHHHHHHHHHHHHHHhcCCCeeCCCCCCCCcccccc---cCCCCCCCcCHHHHHHHH
Confidence 9 8999999999988 589999999999999999999999999999999999864 468999999999999999
Q ss_pred HH-cCCCccccceeeccccccccccccccccccccCCCCCCCCCCCHHHHHHHHhhcCCCCCCCCCCCCCCCCCCCCCCC
Q 035578 196 SL-RGFSPRETVSLIGAHNIGKISCQFIRNRLYDFLGTGQPDPTMSDDFLVEMRVLCGDGNQTSLHGSPAPASAPAPMRS 274 (377)
Q Consensus 196 ~~-~Gls~~elVaLsGAHTiG~ahc~~f~~Rl~~~~g~~~~dp~~d~~~~~~L~~~Cp~~~~~~~~~~~~~~~~~~~~~~ 274 (377)
++ +||+++|||||+||||||++|| .|+ +|.| .+
T Consensus 146 ~~~~Gl~~~d~VaLsGaHTiG~~hc----~r~-~~~g------------------------~~----------------- 179 (250)
T PLN02364 146 AKQMGLSDKDIVALSGAHTLGRCHK----DRS-GFEG------------------------AW----------------- 179 (250)
T ss_pred HHhcCCCHHHheeeecceeeccccC----CCC-CCCC------------------------CC-----------------
Confidence 97 5999999999999999999999 354 2211 01
Q ss_pred CCccccccccccccccccCCCCCCcccHHHHHHHhcC--Ccccc--chhhhccChhHHHHHHHHhhcchhHHHHHHHHHH
Q 035578 275 SGMRESTLGMNYYQRLSTSISSGAGFDAHYYQNLLRG--RGLLH--ADQQLMAEEKTAKLVWAYASDCGTAYRTDFARVM 350 (377)
Q Consensus 275 r~~~~~~~~~~lD~~~~~~~~Tp~~FDN~Yy~nl~~~--~glL~--SDq~L~~d~~T~~~V~~yA~d~~~~F~~~Fa~Am 350 (377)
+ . ||.+|||+||++|+.+ +|+|. |||+|+.|++|+.+|+.||.| +++|+++|++||
T Consensus 180 ------------~-~------tp~~fDn~Yy~~ll~~~~~gll~l~sD~~L~~d~~T~~~v~~~a~~-~~~F~~~Fa~Am 239 (250)
T PLN02364 180 ------------T-S------NPLIFDNSYFKELLSGEKEGLLQLVSDKALLDDPVFRPLVEKYAAD-EDAFFADYAEAH 239 (250)
T ss_pred ------------C-C------CCCccchHHHHHHhcCCcCCCccccchHHHccCchHHHHHHHHhhC-HHHHHHHHHHHH
Confidence 1 2 8999999999999999 89876 999999999999999999999 999999999999
Q ss_pred HHHHcCCCC
Q 035578 351 LKMSNLGVL 359 (377)
Q Consensus 351 ~KM~~lgv~ 359 (377)
+||++|++-
T Consensus 240 ~Km~~lg~~ 248 (250)
T PLN02364 240 MKLSELGFA 248 (250)
T ss_pred HHHHccCCC
Confidence 999999973
No 7
>cd00692 ligninase Ligninase and other manganese-dependent fungal peroxidases. Ligninases and related extracellular fungal peroxidases belong to class II of the plant heme-dependent peroxidase superfamily. All members of the superfamily share a heme prosthetic group and catalyze a multistep oxidative reaction involving hydrogen peroxide as the electron acceptor. Class II peroxidases are fungal glycoproteins that have been implicated in the oxidative breakdown of lignin, the main cell wall component of woody plants. They contain four conserved disulphide bridges and two conserved calcium binding sites.
Probab=100.00 E-value=8.4e-62 Score=477.60 Aligned_cols=238 Identities=26% Similarity=0.367 Sum_probs=212.2
Q ss_pred HHHHHHHHHHHHHhcCCC---CCcceeeeeeccccc------------cCCCceeeccCCCCCCCCCCccCCCCCCCCch
Q 035578 55 AEKTVRSKMAQLYSQDKQ---VPANLLRLFFHDCFI------------MGCDASVFLDDSNGNESHPIERQAIPSQTLKG 119 (377)
Q Consensus 55 ~e~iV~~~v~~~~~~d~~---~a~~llRL~FHDcfv------------~GcDgSilLd~~~~~~~E~~~~~~~~N~~L~g 119 (377)
+|..|++.|++.+..+.. .|+.+|||+||||++ +||||||||+.+ .|+++ ++|.||+
T Consensus 16 ~~~~v~~dl~~~~~~~~~c~~~a~~~lRL~FHD~~~~~~~~~~~~~~~gGcDgSill~~~----~E~~~---~~N~gL~- 87 (328)
T cd00692 16 VWFDILDDIQGNLFNGGECGEEAHESLRLTFHDAIGFSPALAAGQFGGGGADGSIVLFDD----IETAF---HANIGLD- 87 (328)
T ss_pred chHHHHHHHHHHHhcCCCCchHHHHhHHHhhhcccccccccccCCCCCCCcCceeecCCc----ccccC---CCCCCHH-
Confidence 688899999999986554 566799999999996 799999999853 69999 9999998
Q ss_pred HHHHHHHHHHHHhhCCCCCCHHHHHHhhhHhHHHh-hCCCCcccccCccCCCCccccccccCCCCCCCCHHHHHHHHHHc
Q 035578 120 FDKINLIKEELEEACPGMVSCADALALATRDGILL-AGGPYYPVFTGRRDSIRSYFQEATAEIPGPDDDLNKILHLFSLR 198 (377)
Q Consensus 120 ~~~I~~iK~~le~~cp~~VScADilalAar~av~~-~GGP~~~v~~GRrD~~~s~~~~a~~~LP~p~~~~~~l~~~F~~~ 198 (377)
++|+.+|..+|++| ||||||||||||+||+. .|||.|+|++||+|++++.+ +++||.|+.++++|++.|+++
T Consensus 88 -~vvd~lk~~~e~~c---VScADiialAa~~AV~~~~GGP~i~v~~GR~D~~~s~~---~g~LP~p~~sv~~l~~~F~~~ 160 (328)
T cd00692 88 -EIVEALRPFHQKHN---VSMADFIQFAGAVAVSNCPGAPRLEFYAGRKDATQPAP---DGLVPEPFDSVDKILARFADA 160 (328)
T ss_pred -HHHHHHHHHHHhcC---cCHHHHHHHHHHHHHHhcCCCCcccccCCCCCCCCCCc---ccCCCCCCCCHHHHHHHHHHc
Confidence 89999999999998 99999999999999996 59999999999999999864 468999999999999999999
Q ss_pred CCCccccceeeccccccccccccccccccccCCCCCCCCCCCHHHHHHHHhhcCCCCCCCCCCCCCCCCCCCCCCCCCcc
Q 035578 199 GFSPRETVSLIGAHNIGKISCQFIRNRLYDFLGTGQPDPTMSDDFLVEMRVLCGDGNQTSLHGSPAPASAPAPMRSSGMR 278 (377)
Q Consensus 199 Gls~~elVaLsGAHTiG~ahc~~f~~Rl~~~~g~~~~dp~~d~~~~~~L~~~Cp~~~~~~~~~~~~~~~~~~~~~~r~~~ 278 (377)
||+++|||+|+||||||++|. +||+++
T Consensus 161 Gf~~~E~VaLsGAHTiG~a~~---------------~Dps~~-------------------------------------- 187 (328)
T cd00692 161 GFSPDELVALLAAHSVAAQDF---------------VDPSIA-------------------------------------- 187 (328)
T ss_pred CCCHHHHhhhcccccccccCC---------------CCCCCC--------------------------------------
Confidence 999999999999999999881 366653
Q ss_pred ccccccccccccccCCCCCCcccHHHHHHHh-cCCc-------------------cccchhhhccChhHHHHHHHHhhcc
Q 035578 279 ESTLGMNYYQRLSTSISSGAGFDAHYYQNLL-RGRG-------------------LLHADQQLMAEEKTAKLVWAYASDC 338 (377)
Q Consensus 279 ~~~~~~~lD~~~~~~~~Tp~~FDN~Yy~nl~-~~~g-------------------lL~SDq~L~~d~~T~~~V~~yA~d~ 338 (377)
.+++| . ||.+|||+||+|++ .+++ +|+||++|+.|++|+.+|++||+|
T Consensus 188 ----g~p~D-~------TP~~FDn~Yf~~ll~~~~~~~g~~~~~~e~~~~~~g~~~L~SD~~L~~D~~T~~~v~~fa~d- 255 (328)
T cd00692 188 ----GTPFD-S------TPGVFDTQFFIETLLKGTAFPGSGGNQGEVESPLPGEFRLQSDFLLARDPRTACEWQSFVNN- 255 (328)
T ss_pred ----CCCCC-C------CcchhcHHHHHHHHHcCCCCCCccccccccccCccccccccchHHHhcCCcHHHHHHHHhcC-
Confidence 12355 3 99999999999987 5555 499999999999999999999999
Q ss_pred hhHHHHHHHHHHHHHHcCCCCCCCCCcccccccccCCC
Q 035578 339 GTAYRTDFARVMLKMSNLGVLSGSQGQVRTNCSLSLNS 376 (377)
Q Consensus 339 ~~~F~~~Fa~Am~KM~~lgv~tg~~GEIR~~C~~vN~~ 376 (377)
|++|+++|++||+||++|||. ...+.+|+.|++.
T Consensus 256 q~~f~~~Fa~Am~KLs~lgv~----~~~l~dcs~v~p~ 289 (328)
T cd00692 256 QAKMNAAFAAAMLKLSLLGQD----NISLTDCSDVIPP 289 (328)
T ss_pred HHHHHHHHHHHHHHHHcCCCC----cchhccCcccCCC
Confidence 999999999999999999985 4478899999864
No 8
>PLN02879 L-ascorbate peroxidase
Probab=100.00 E-value=6.1e-61 Score=456.88 Aligned_cols=219 Identities=26% Similarity=0.429 Sum_probs=195.6
Q ss_pred HHHHHHHHHHHhcCCCCCcceeeeeeccccc-------cCCCceeeccCCCCCCCCCCccCCCCCCCCc-hHHHHHHHHH
Q 035578 57 KTVRSKMAQLYSQDKQVPANLLRLFFHDCFI-------MGCDASVFLDDSNGNESHPIERQAIPSQTLK-GFDKINLIKE 128 (377)
Q Consensus 57 ~iV~~~v~~~~~~d~~~a~~llRL~FHDcfv-------~GcDgSilLd~~~~~~~E~~~~~~~~N~~L~-g~~~I~~iK~ 128 (377)
+-++..+.+.+ .+...+|.+|||+||||++ +||||||++. .|+++ ++|.||+ ++++|+.||+
T Consensus 18 ~~~~~~~~~~~-~~~~~~p~~vRla~Hdagt~~~~~~~GG~~Gsirf~------~E~~~---~~N~gL~~~~~~i~~iK~ 87 (251)
T PLN02879 18 QRCKRKLRGLI-AEKHCAPIVLRLAWHSAGTFDVKTKTGGPFGTIRHP------QELAH---DANNGLDIAVRLLDPIKE 87 (251)
T ss_pred HHHHHHHHHHH-hCCCchhHhHHHHHhhhccccCCCCCCCCCeeecCh------hhccC---CCcCChHHHHHHHHHHHH
Confidence 34567777766 4578999999999999964 8999999853 59999 9999996 9999999999
Q ss_pred HHHhhCCCCCCHHHHHHhhhHhHHHhhCCCCcccccCccCCCCccccccccCCCCCCCCHHHHHHHHHHcCCCcccccee
Q 035578 129 ELEEACPGMVSCADALALATRDGILLAGGPYYPVFTGRRDSIRSYFQEATAEIPGPDDDLNKILHLFSLRGFSPRETVSL 208 (377)
Q Consensus 129 ~le~~cp~~VScADilalAar~av~~~GGP~~~v~~GRrD~~~s~~~~a~~~LP~p~~~~~~l~~~F~~~Gls~~elVaL 208 (377)
++ ++|||||||+||||+||+.+|||.|+|++||+|+.++. ++++||.|+.++++|++.|+++||+++|||||
T Consensus 88 ~~-----~~VScADilalAa~~AV~~~GGP~~~~~~GR~D~~~~~---~~~~lP~p~~~~~~l~~~F~~~Gl~~~dlVAL 159 (251)
T PLN02879 88 LF-----PILSYADFYQLAGVVAVEITGGPEIPFHPGRLDKVEPP---PEGRLPQATKGVDHLRDVFGRMGLNDKDIVAL 159 (251)
T ss_pred Hc-----CCcCHHHHHHHHHHHHHHhcCCCccCCCCCCCCCCCCC---cccCCCCCCCCHHHHHHHHHHcCCCHHHHeee
Confidence 88 57999999999999999999999999999999999885 35689999999999999999999999999999
Q ss_pred eccccccccccccccccccccCCCCCCCCCCCHHHHHHHHhhcCCCCCCCCCCCCCCCCCCCCCCCCCcccccccccccc
Q 035578 209 IGAHNIGKISCQFIRNRLYDFLGTGQPDPTMSDDFLVEMRVLCGDGNQTSLHGSPAPASAPAPMRSSGMRESTLGMNYYQ 288 (377)
Q Consensus 209 sGAHTiG~ahc~~f~~Rl~~~~g~~~~dp~~d~~~~~~L~~~Cp~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~lD~ 288 (377)
+||||||++||. | ++|.| . +|
T Consensus 160 sGaHTiG~ah~~----r-~g~~g------------------------~-----------------------------~d- 180 (251)
T PLN02879 160 SGGHTLGRCHKE----R-SGFEG------------------------A-----------------------------WT- 180 (251)
T ss_pred eccccccccccc----c-ccCCC------------------------C-----------------------------CC-
Confidence 999999999995 3 22211 0 12
Q ss_pred ccccCCCCCCcccHHHHHHHhcC--Ccc--ccchhhhccChhHHHHHHHHhhcchhHHHHHHHHHHHHHHcCCCC
Q 035578 289 RLSTSISSGAGFDAHYYQNLLRG--RGL--LHADQQLMAEEKTAKLVWAYASDCGTAYRTDFARVMLKMSNLGVL 359 (377)
Q Consensus 289 ~~~~~~~Tp~~FDN~Yy~nl~~~--~gl--L~SDq~L~~d~~T~~~V~~yA~d~~~~F~~~Fa~Am~KM~~lgv~ 359 (377)
. ||.+|||+||++|+.+ +|+ |+|||+|+.|++|+++|++||.| |++||++|++||+||++||+.
T Consensus 181 ~------tp~~FDN~Yy~~ll~~~~~gll~L~SD~aL~~D~~t~~~V~~~A~d-~~~F~~~Fa~Am~KL~~lg~~ 248 (251)
T PLN02879 181 P------NPLIFDNSYFKEILSGEKEGLLQLPTDKALLDDPLFLPFVEKYAAD-EDAFFEDYTEAHLKLSELGFA 248 (251)
T ss_pred C------CccceeHHHHHHHHcCCcCCCccchhhHHHhcCCcHHHHHHHHhhC-HHHHHHHHHHHHHHHHccCCC
Confidence 2 8999999999999999 898 67999999999999999999999 999999999999999999975
No 9
>cd00314 plant_peroxidase_like Heme-dependent peroxidases similar to plant peroxidases. Along with animal peroxidases, these enzymes belong to a group of peroxidases containing a heme prosthetic group (ferriprotoporphyrin IX), which catalyzes a multistep oxidative reaction involving hydrogen peroxide as the electron acceptor. The plant peroxidase-like superfamily is found in all three kingdoms of life and carries out a variety of biosynthetic and degradative functions. Several sub-families can be identified. Class I includes intracellular peroxidases present in fungi, plants, archaea and bacteria, called catalase-peroxidases, that can exhibit both catalase and broad-spectrum peroxidase activities depending on the steady-state concentration of hydrogen peroxide. Catalase-peroxidases are typically comprised of two homologous domains that probably arose via a single gene duplication event. Class II includes ligninase and other extracellular fungal peroxidases, while class III is comprised
Probab=100.00 E-value=4.9e-57 Score=431.33 Aligned_cols=223 Identities=30% Similarity=0.458 Sum_probs=205.0
Q ss_pred HHHHHHHHHHhcCCCCCcceeeeeecccccc--------CCCceeeccCCCCCCCCCCccCCCCCCCC-chHHHHHHHHH
Q 035578 58 TVRSKMAQLYSQDKQVPANLLRLFFHDCFIM--------GCDASVFLDDSNGNESHPIERQAIPSQTL-KGFDKINLIKE 128 (377)
Q Consensus 58 iV~~~v~~~~~~d~~~a~~llRL~FHDcfv~--------GcDgSilLd~~~~~~~E~~~~~~~~N~~L-~g~~~I~~iK~ 128 (377)
.|++.|++.+.+++.+++++|||+||||+++ ||||||+++. |+++ ++|.+| +++++|+.||+
T Consensus 2 ~v~~~l~~~~~~~~~~~~~llRl~fHD~~~~~~~~~~~gg~dgsi~~~~------e~~~---~~N~~l~~~~~~l~~ik~ 72 (255)
T cd00314 2 AIKAILEDLITQAGALAGSLLRLAFHDAGTYDIADGKGGGADGSIRFEP------ELDR---PENGGLDKALRALEPIKS 72 (255)
T ss_pred hHHHHHHHHHHhCcchHHHHHHHHHHHhccccccCCCCCCCCceEeccc------cccC---cccccHHHHHHHHHHHHH
Confidence 4888999999999999999999999999997 9999999973 9999 999997 99999999999
Q ss_pred HHHhhCCCCCCHHHHHHhhhHhHHHhh--CCCCcccccCccCCCCcc--ccccccCCCCCCCCHHHHHHHHHHcCCCccc
Q 035578 129 ELEEACPGMVSCADALALATRDGILLA--GGPYYPVFTGRRDSIRSY--FQEATAEIPGPDDDLNKILHLFSLRGFSPRE 204 (377)
Q Consensus 129 ~le~~cp~~VScADilalAar~av~~~--GGP~~~v~~GRrD~~~s~--~~~a~~~LP~p~~~~~~l~~~F~~~Gls~~e 204 (377)
++|. |++|||||||++|+++||+.+ |||.|+|++||+|+..+. ...+.+++|.|..+++++++.|+++||+++|
T Consensus 73 ~~~~--~~~vS~ADlialAa~~Av~~~~~ggp~~~~~~GR~D~~~~~~~~p~P~~~~p~~~~~~~~~~~~F~~~Gl~~~e 150 (255)
T cd00314 73 AYDG--GNPVSRADLIALAGAVAVESTFGGGPLIPFRFGRLDATEPDLGVPDPEGLLPNETSSATELRDKFKRMGLSPSE 150 (255)
T ss_pred HcCC--CCcccHHHHHHHHHHHHHHHhccCCCeeeeCCCCCCCchhhccCCCCCCCCCCccchHHHHHHHHHHcCCCHHH
Confidence 9988 899999999999999999999 999999999999999764 3345567888888999999999999999999
Q ss_pred cceee-ccccc-cccccccccccccccCCCCCCCCCCCHHHHHHHHhhcCCCCCCCCCCCCCCCCCCCCCCCCCcccccc
Q 035578 205 TVSLI-GAHNI-GKISCQFIRNRLYDFLGTGQPDPTMSDDFLVEMRVLCGDGNQTSLHGSPAPASAPAPMRSSGMRESTL 282 (377)
Q Consensus 205 lVaLs-GAHTi-G~ahc~~f~~Rl~~~~g~~~~dp~~d~~~~~~L~~~Cp~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~ 282 (377)
||||+ ||||| |++||..|..|+ |+
T Consensus 151 ~VAL~~GaHti~G~~~~~~~~~~~------------------------~~------------------------------ 176 (255)
T cd00314 151 LVALSAGAHTLGGKNHGDLLNYEG------------------------SG------------------------------ 176 (255)
T ss_pred HHhhccCCeeccCcccCCCCCccc------------------------CC------------------------------
Confidence 99999 99999 999999887664 21
Q ss_pred ccccccccccCCCCCCcccHHHHHHHhcCC----------------ccccchhhhccChhHHHHHHHHhhcchhHHHHHH
Q 035578 283 GMNYYQRLSTSISSGAGFDAHYYQNLLRGR----------------GLLHADQQLMAEEKTAKLVWAYASDCGTAYRTDF 346 (377)
Q Consensus 283 ~~~lD~~~~~~~~Tp~~FDN~Yy~nl~~~~----------------glL~SDq~L~~d~~T~~~V~~yA~d~~~~F~~~F 346 (377)
+|+. ||.+|||+||++|+.++ ++|+||+.|+.|++|+.+|+.||.| +++|+++|
T Consensus 177 ---~~~~------tp~~fDN~yy~~l~~~~~~~~~~~~~~~~~~~~~~l~sD~~L~~d~~t~~~v~~ya~~-~~~f~~~F 246 (255)
T cd00314 177 ---LWTS------TPFTFDNAYFKNLLDMNWEWRVGSPDPDGVKGPGLLPSDYALLSDSETRALVERYASD-QEKFFEDF 246 (255)
T ss_pred ---CCCC------CCCccchHHHHHHhcCCcccccCCccCCCcccCCCchhhHHHhcCHhHHHHHHHHHhC-HHHHHHHH
Confidence 1224 99999999999999998 9999999999999999999999999 99999999
Q ss_pred HHHHHHHHc
Q 035578 347 ARVMLKMSN 355 (377)
Q Consensus 347 a~Am~KM~~ 355 (377)
++||+||++
T Consensus 247 a~a~~Km~~ 255 (255)
T cd00314 247 AKAWIKMVN 255 (255)
T ss_pred HHHHHHHcC
Confidence 999999985
No 10
>cd00649 catalase_peroxidase_1 N-terminal catalytic domain of catalase-peroxidases. This is a subgroup of heme-dependent peroxidases of the plant superfamily that share a heme prosthetic group and catalyze a multistep oxidative reaction involving hydrogen peroxide as the electron acceptor. Catalase-peroxidases can exhibit both catalase and broad-spectrum peroxidase activities depending on the steady-state concentration of hydrogen peroxide. These enzymes are found in many archaeal and bacterial organisms, where they neutralize potentially lethal hydrogen peroxide molecules generated during photosynthesis or stationary phase. Along with related intracellular fungal and plant peroxidases, catalase-peroxidases belong to class I of the plant peroxidase superfamily. Unlike the eukaryotic enzymes, they are typically comprised of two homologous domains that probably arose via a single gene duplication event. The heme binding motif is present only in the N-terminal domain; the function of the C
Probab=100.00 E-value=1.5e-54 Score=433.14 Aligned_cols=262 Identities=18% Similarity=0.222 Sum_probs=227.8
Q ss_pred HHHHHHHHHHHhcC--------CCCCcceeeeeeccccc-------cCCC-ceeeccCCCCCCCCCCccCCCCCCCC-ch
Q 035578 57 KTVRSKMAQLYSQD--------KQVPANLLRLFFHDCFI-------MGCD-ASVFLDDSNGNESHPIERQAIPSQTL-KG 119 (377)
Q Consensus 57 ~iV~~~v~~~~~~d--------~~~a~~llRL~FHDcfv-------~GcD-gSilLd~~~~~~~E~~~~~~~~N~~L-~g 119 (377)
+.|++.|++.+... ...+|.+|||+||++.+ +|++ |+|.+. .|++. +.|.+| ++
T Consensus 45 ~~~~~di~~ll~~s~~~wp~D~g~~gp~lvRlAWh~AgTy~~~d~~GG~ngg~iRf~------pe~~~---~~N~gL~~a 115 (409)
T cd00649 45 EALKEDLKALMTDSQDWWPADYGHYGPLFIRMAWHSAGTYRIADGRGGAGTGQQRFA------PLNSW---PDNVNLDKA 115 (409)
T ss_pred HHHHHHHHHHHhcccccCccccCCcccceeeeeccccccccCcCCCCCCCCCccccc------cccCc---HhhhhHHHH
Confidence 67888899888753 37999999999999986 7886 788765 58888 999999 78
Q ss_pred HHHHHHHHHHHHhhCCCCCCHHHHHHhhhHhHHHhhCCCCcccccCccCCCCcccc------------------------
Q 035578 120 FDKINLIKEELEEACPGMVSCADALALATRDGILLAGGPYYPVFTGRRDSIRSYFQ------------------------ 175 (377)
Q Consensus 120 ~~~I~~iK~~le~~cp~~VScADilalAar~av~~~GGP~~~v~~GRrD~~~s~~~------------------------ 175 (377)
+.+++.||+++ |..||+||+|+||+.+||+.+|||.|++.+||.|...+...
T Consensus 116 ~~~L~pik~k~----~~~iS~ADL~~LaG~~AiE~~Ggp~ipf~~GR~Da~~~~~~v~wg~~~~~~~~~~~~~~~~l~~p 191 (409)
T cd00649 116 RRLLWPIKQKY----GNKISWADLMILAGNVALESMGFKTFGFAGGREDVWEPDEDVYWGPEKEWLADKRYSGDRDLENP 191 (409)
T ss_pred HHHHHHHHHHc----CCCccHHHHHHHHHHHHHHHcCCCcccccCCCCccCCCccccccCcchhcccccccccchhhccc
Confidence 99999999977 55799999999999999999999999999999999754320
Q ss_pred -----------cccc--CCCCCCCCHHHHHHHHHHcCCCcccccee-eccccccccccccccccccccCCCCCCCCCCCH
Q 035578 176 -----------EATA--EIPGPDDDLNKILHLFSLRGFSPRETVSL-IGAHNIGKISCQFIRNRLYDFLGTGQPDPTMSD 241 (377)
Q Consensus 176 -----------~a~~--~LP~p~~~~~~l~~~F~~~Gls~~elVaL-sGAHTiG~ahc~~f~~Rl~~~~g~~~~dp~~d~ 241 (377)
.+++ .||+|..++.+|++.|.+|||+++||||| +||||||++||..|.+||. +||.+++
T Consensus 192 l~a~~mgliyv~Pegp~gLPdP~~sa~~LR~~F~RmGlnd~E~VAL~sGAHTiGkaHc~~~~~rlg-------~dP~~~~ 264 (409)
T cd00649 192 LAAVQMGLIYVNPEGPDGNPDPLAAAKDIRETFARMAMNDEETVALIAGGHTFGKTHGAGPASHVG-------PEPEAAP 264 (409)
T ss_pred hhhhhccccccCCCCCCCCCCCccCHHHHHHHHHHcCCCHHHHeeeccCCcceeecCcccccccCC-------CCCCcCH
Confidence 1223 79999999999999999999999999999 5999999999999999982 6999999
Q ss_pred HHHHHHH--hhcCCCCCCCCCCCCCCCCCCCCCCCCCccccccccccccccccCCCCCCcccHHHHHHHhc---------
Q 035578 242 DFLVEMR--VLCGDGNQTSLHGSPAPASAPAPMRSSGMRESTLGMNYYQRLSTSISSGAGFDAHYYQNLLR--------- 310 (377)
Q Consensus 242 ~~~~~L~--~~Cp~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~lD~~~~~~~~Tp~~FDN~Yy~nl~~--------- 310 (377)
.|+..|+ .+||...+.. +..+.||.. |..||.+|||+||++|+.
T Consensus 265 ~~~~gLgw~~~Cp~g~g~~----------------------t~~sglDG~---Wt~tP~~FDN~YF~nLl~~eW~~~~~p 319 (409)
T cd00649 265 IEQQGLGWKNSYGTGKGKD----------------------TITSGLEGA---WTPTPTKWDNNYLKNLFGYEWELTKSP 319 (409)
T ss_pred HHHHhhcccccCCCCCCCC----------------------CccccCCCC---CCCCcchhhHHHHHHHHhccceeccCC
Confidence 9999995 8999643221 134568743 666999999999999998
Q ss_pred ---------------------------CCccccchhhhccChhHHHHHHHHhhcchhHHHHHHHHHHHHH--HcCCCCCC
Q 035578 311 ---------------------------GRGLLHADQQLMAEEKTAKLVWAYASDCGTAYRTDFARVMLKM--SNLGVLSG 361 (377)
Q Consensus 311 ---------------------------~~glL~SDq~L~~d~~T~~~V~~yA~d~~~~F~~~Fa~Am~KM--~~lgv~tg 361 (377)
++++|+||++|+.|++|+++|++||+| +++||++|++||+|| +.+|+++-
T Consensus 320 ~g~~Q~~~~~~~~~~~~~d~~~~~~~~~~gmL~SD~aL~~Dp~tr~iV~~yA~d-~~~Ff~dFA~A~~KL~hrdmgp~~~ 398 (409)
T cd00649 320 AGAWQWVPKNAAGENTVPDAHDPSKKHAPMMLTTDLALRFDPEYEKISRRFLEN-PDEFADAFAKAWFKLTHRDMGPKSR 398 (409)
T ss_pred CCcccccccCccccccCCCccccccccCcccchhhHhhhcCccHHHHHHHHhcC-HHHHHHHHHHHHHHHccccCCchhh
Confidence 569999999999999999999999999 999999999999999 68999885
Q ss_pred CCC
Q 035578 362 SQG 364 (377)
Q Consensus 362 ~~G 364 (377)
-.|
T Consensus 399 ~~g 401 (409)
T cd00649 399 YLG 401 (409)
T ss_pred hcC
Confidence 544
No 11
>TIGR00198 cat_per_HPI catalase/peroxidase HPI. Note that the translation PID:g296476 from accession X71420 from Rhodobacter capsulatus B10 contains extensive frameshift differences from the rest of the orthologous family.
Probab=100.00 E-value=1.8e-51 Score=433.87 Aligned_cols=268 Identities=19% Similarity=0.199 Sum_probs=226.0
Q ss_pred cccCChhH-HHHHHHHHHHHHhcC--------CCCCcceeeeeeccccc-------cCC-CceeeccCCCCCCCCCCccC
Q 035578 48 YRDKCPDA-EKTVRSKMAQLYSQD--------KQVPANLLRLFFHDCFI-------MGC-DASVFLDDSNGNESHPIERQ 110 (377)
Q Consensus 48 Y~~sCP~~-e~iV~~~v~~~~~~d--------~~~a~~llRL~FHDcfv-------~Gc-DgSilLd~~~~~~~E~~~~~ 110 (377)
|.+-+-.. .+.|++.|++.+... ...+|.+|||+||++.+ +|| .|+|.+. .|++.
T Consensus 45 y~~~~~~ld~~a~~~dl~~l~~~s~~wwpad~g~ygp~~vRlAWHsAgTYr~~d~rGGa~gg~iRf~------P~~sw-- 116 (716)
T TIGR00198 45 YAEEFQQLDLAAVKQDLKHLMTDSQSWWPADWGHYGGLFIRMAWHAAGTYRIADGRGGAATGNQRFA------PLNSW-- 116 (716)
T ss_pred HHHHhhhccHHHHHHHHHHHHhcCcccCccccCCcceeeeeeeccccccccCCCCCCCCCCCceecc------cccCc--
Confidence 44444333 345888899888753 37899999999999987 688 5888765 58888
Q ss_pred CCCCCCC-chHHHHHHHHHHHHhhCCCCCCHHHHHHhhhHhHHHhhCCCCcccccCccCCCCcc----------------
Q 035578 111 AIPSQTL-KGFDKINLIKEELEEACPGMVSCADALALATRDGILLAGGPYYPVFTGRRDSIRSY---------------- 173 (377)
Q Consensus 111 ~~~N~~L-~g~~~I~~iK~~le~~cp~~VScADilalAar~av~~~GGP~~~v~~GRrD~~~s~---------------- 173 (377)
+.|.+| +++.+++.||+ .||++|||||||+||+++||+.+|||.|+|.+||+|+..+.
T Consensus 117 -~~N~~Ldka~~lL~pIk~----kyp~~VS~ADLivLAG~vAVE~~Ggp~i~f~~GR~D~~~~~~d~~~g~e~~~l~~~~ 191 (716)
T TIGR00198 117 -PDNVNLDKARRLLWPIKK----KYGNKLSWADLIILAGTVAYESMGLKVFGFAGGREDIWEPDKDIYWGAEKEWLTSSR 191 (716)
T ss_pred -hhhhhHHHHHHHHHHHHH----HCCCceeHHHHHHHHHHHHHHHhCCCccCCCCCCCCCCCcccccccccccchhhccc
Confidence 999999 78899998887 67999999999999999999999999999999999994321
Q ss_pred ---------------------ccccccCCCCCCCCHHHHHHHHHHcCCCccccceee-ccccccccccccccccccccCC
Q 035578 174 ---------------------FQEATAEIPGPDDDLNKILHLFSLRGFSPRETVSLI-GAHNIGKISCQFIRNRLYDFLG 231 (377)
Q Consensus 174 ---------------------~~~a~~~LP~p~~~~~~l~~~F~~~Gls~~elVaLs-GAHTiG~ahc~~f~~Rl~~~~g 231 (377)
+.. ...+|.|..++.+|++.|.++||+.+|||||+ ||||||++||.+|.+||
T Consensus 192 ~~~~~l~~p~a~~~~Gliyvnpeg-~~~lPdP~~sa~~Lrd~F~rmGLnd~EmVALiaGaHTiGkaHc~s~~~rl----- 265 (716)
T TIGR00198 192 EDRESLENPLAATEMGLIYVNPEG-PDGHPDPLCTAQDIRTTFARMGMNDEETVALIAGGHTVGKCHGAGPAELI----- 265 (716)
T ss_pred cccccccccchhhhccccccCccc-ccCCCCCCCCHHHHHHHHHHcCCChHHHeeeecCceeccccCCCcccccC-----
Confidence 111 22699999999999999999999999999996 99999999999999998
Q ss_pred CCCCCCCCCHHHHHHHHhhcCCCCCCCCCCCCCCCCCCCCCCCCCccccccccccccccccCCCCCCcccHHHHHHHhcC
Q 035578 232 TGQPDPTMSDDFLVEMRVLCGDGNQTSLHGSPAPASAPAPMRSSGMRESTLGMNYYQRLSTSISSGAGFDAHYYQNLLRG 311 (377)
Q Consensus 232 ~~~~dp~~d~~~~~~L~~~Cp~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~lD~~~~~~~~Tp~~FDN~Yy~nl~~~ 311 (377)
.+||++++.|++.|+.+||...+.. ..+..+.+|.. |..||.+|||+||+||+.+
T Consensus 266 --g~dP~~~~~~~~gLg~~c~~~~g~g--------------------~dt~~sglDG~---wT~TP~~FDN~YF~nLl~~ 320 (716)
T TIGR00198 266 --GPDPEGAPIEEQGLGWHNQYGKGVG--------------------RDTMTSGLEVA---WTTTPTQWDNGYFYMLFNY 320 (716)
T ss_pred --CCCCCcCHHHHHHhcccCCCCCCCC--------------------CCcccccCCCC---CCCCCCccchHHHHHHhcC
Confidence 3799999999999999998532211 01135667742 6669999999999999975
Q ss_pred ----------------------------------CccccchhhhccChhHHHHHHHHhhcchhHHHHHHHHHHHHHHc--
Q 035578 312 ----------------------------------RGLLHADQQLMAEEKTAKLVWAYASDCGTAYRTDFARVMLKMSN-- 355 (377)
Q Consensus 312 ----------------------------------~glL~SDq~L~~d~~T~~~V~~yA~d~~~~F~~~Fa~Am~KM~~-- 355 (377)
+++|+||++|..|++|+++|+.||.| +++|+++|++||+||++
T Consensus 321 ~w~~~~s~~g~~q~~~~~~~~~~p~~~~~~~~~~~~mL~SDlaL~~Dp~~r~iVe~yA~d-~~~F~~dFA~Aw~KL~~~d 399 (716)
T TIGR00198 321 EWELKKSPAGAWQWEAVDAPEIIPDVEDPNKKHNPIMLDADLALRFDPEFRKISRRFLRE-PDYFAEAFAKAWFKLTHRD 399 (716)
T ss_pred CceeeecCCCCceeeecccccccccccccccccccCccchhHHhccCccHHHHHHHHhcC-HHHHHHHHHHHHHHHcccc
Confidence 78999999999999999999999999 99999999999999995
Q ss_pred CCCCC
Q 035578 356 LGVLS 360 (377)
Q Consensus 356 lgv~t 360 (377)
+|++.
T Consensus 400 ~gp~~ 404 (716)
T TIGR00198 400 MGPKS 404 (716)
T ss_pred cCchh
Confidence 55543
No 12
>PRK15061 catalase/hydroperoxidase HPI(I); Provisional
Probab=100.00 E-value=2e-48 Score=408.86 Aligned_cols=273 Identities=19% Similarity=0.244 Sum_probs=227.8
Q ss_pred CCcCc-cccCChhH-HHHHHHHHHHHHhcC--------CCCCcceeeeeeccccc-------cCCC-ceeeccCCCCCCC
Q 035578 43 LEYDY-YRDKCPDA-EKTVRSKMAQLYSQD--------KQVPANLLRLFFHDCFI-------MGCD-ASVFLDDSNGNES 104 (377)
Q Consensus 43 L~~~f-Y~~sCP~~-e~iV~~~v~~~~~~d--------~~~a~~llRL~FHDcfv-------~GcD-gSilLd~~~~~~~ 104 (377)
+-.+| |.+-+-.. .+.|++.|++.+... ...+|.+|||+||++.+ +||+ |+|.+. .
T Consensus 41 ~~~~f~y~~~~~~ld~~a~k~di~~l~~~sqdwwpaD~g~ygp~~vRlAWH~AgTYr~~d~rGGangg~iRf~------p 114 (726)
T PRK15061 41 MGEDFDYAEEFKKLDLEALKKDLKALMTDSQDWWPADYGHYGPLFIRMAWHSAGTYRIGDGRGGAGGGQQRFA------P 114 (726)
T ss_pred CCCCCCHHHHhchhhHHHHHHHHHHHHhcccccccccCCCccceeeeeeecccccccCcCCCCCCCCCcccCc------c
Confidence 33333 44444333 356888888888753 37899999999999986 7886 788764 5
Q ss_pred CCCccCCCCCCCC-chHHHHHHHHHHHHhhCCCCCCHHHHHHhhhHhHHHhhCCCCcccccCccCCCCcccc--------
Q 035578 105 HPIERQAIPSQTL-KGFDKINLIKEELEEACPGMVSCADALALATRDGILLAGGPYYPVFTGRRDSIRSYFQ-------- 175 (377)
Q Consensus 105 E~~~~~~~~N~~L-~g~~~I~~iK~~le~~cp~~VScADilalAar~av~~~GGP~~~v~~GRrD~~~s~~~-------- 175 (377)
|++. +.|.+| +++.+++.||+++ |..||+||+|+||+.+|||.+|||.|++..||.|...+...
T Consensus 115 e~~w---~~N~gL~ka~~~L~pik~ky----~~~iS~ADLi~LaG~vAiE~~Ggp~i~f~~GR~D~~~~~~~v~wg~e~~ 187 (726)
T PRK15061 115 LNSW---PDNVNLDKARRLLWPIKQKY----GNKISWADLMILAGNVALESMGFKTFGFAGGREDVWEPEEDVYWGPEKE 187 (726)
T ss_pred cccc---hhhhhHHHHHHHHHHHHHHh----CCCccHHHHHHHHHHHHHHHcCCCccCcCCCCCCCcCCccccccCcccc
Confidence 8888 999999 7899999999987 55799999999999999999999999999999998653320
Q ss_pred ------------------------------ccccCCCCCCCCHHHHHHHHHHcCCCccccceee-ccccccccccccccc
Q 035578 176 ------------------------------EATAEIPGPDDDLNKILHLFSLRGFSPRETVSLI-GAHNIGKISCQFIRN 224 (377)
Q Consensus 176 ------------------------------~a~~~LP~p~~~~~~l~~~F~~~Gls~~elVaLs-GAHTiG~ahc~~f~~ 224 (377)
+....+|+|..++.+|++.|.+|||+++|||||+ ||||||++||..|.+
T Consensus 188 ~l~~~~r~~~~~~l~~pl~a~~mgliyvnpegp~glPdP~~sa~~lR~tF~RMGmnDeEtVALiaGgHT~GkaHca~~~~ 267 (726)
T PRK15061 188 WLGGDERYSGERDLENPLAAVQMGLIYVNPEGPNGNPDPLAAARDIRETFARMAMNDEETVALIAGGHTFGKTHGAGDAS 267 (726)
T ss_pred ccccccccccccccccchhhhhccceecCCCCCCCCCCcccCHHHHHHHHHHcCCCHHHheeeccCCceeeeCCCcCccc
Confidence 0112489999999999999999999999999995 999999999999999
Q ss_pred cccccCCCCCCCCCCCHHHHHHHH--hhcCCCCCCCCCCCCCCCCCCCCCCCCCccccccccccccccccCCCCCCcccH
Q 035578 225 RLYDFLGTGQPDPTMSDDFLVEMR--VLCGDGNQTSLHGSPAPASAPAPMRSSGMRESTLGMNYYQRLSTSISSGAGFDA 302 (377)
Q Consensus 225 Rl~~~~g~~~~dp~~d~~~~~~L~--~~Cp~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~lD~~~~~~~~Tp~~FDN 302 (377)
|| .+||++++.++..|+ ..||.+.+.. +.++.+|.. |..||.+|||
T Consensus 268 rl-------gpdP~~a~~~~qgLgw~~~c~~g~g~d----------------------t~tsGldG~---Wt~tPt~fDN 315 (726)
T PRK15061 268 HV-------GPEPEAAPIEEQGLGWKNSYGSGKGAD----------------------TITSGLEGA---WTTTPTQWDN 315 (726)
T ss_pred cc-------CCCCCcCHHHHHhccccccCCCCCCCC----------------------CccccCCCC---CCCCcchhhH
Confidence 98 379999999999985 8999642221 135567743 6679999999
Q ss_pred HHHHHHhcC------------------------------------CccccchhhhccChhHHHHHHHHhhcchhHHHHHH
Q 035578 303 HYYQNLLRG------------------------------------RGLLHADQQLMAEEKTAKLVWAYASDCGTAYRTDF 346 (377)
Q Consensus 303 ~Yy~nl~~~------------------------------------~glL~SDq~L~~d~~T~~~V~~yA~d~~~~F~~~F 346 (377)
+||++|+.+ .++|+||++|+.|++++++|++||+| +++|+++|
T Consensus 316 ~YF~nLl~~~W~~~~sp~G~~qw~~~~~~~~~~~pd~~~~~~~~~~~MLtSD~AL~~DP~~r~iV~~fA~d-~~~F~~~F 394 (726)
T PRK15061 316 GYFENLFGYEWELTKSPAGAWQWVPKDGAAEDTVPDAHDPSKKHAPTMLTTDLALRFDPEYEKISRRFLEN-PEEFADAF 394 (726)
T ss_pred HHHHHHhhCcceeccCCCccccccccCccccccCCcccccccccCcccccccHHhhcCCcHHHHHHHHhcC-HHHHHHHH
Confidence 999999984 68999999999999999999999999 99999999
Q ss_pred HHHHHHHHc--CCCCCC
Q 035578 347 ARVMLKMSN--LGVLSG 361 (377)
Q Consensus 347 a~Am~KM~~--lgv~tg 361 (377)
++||+||.+ +|+++-
T Consensus 395 A~A~~KL~hrdmgp~~r 411 (726)
T PRK15061 395 ARAWFKLTHRDMGPKSR 411 (726)
T ss_pred HHHHHHHcccCCCchhh
Confidence 999999944 666553
No 13
>cd08201 plant_peroxidase_like_1 Uncharacterized family of plant peroxidase-like proteins. This is a subgroup of heme-dependent peroxidases similar to plant peroxidases. Along with animal peroxidases, these enzymes belong to a group of peroxidases containing a heme prosthetic group (ferriprotoporphyrin IX) which catalyzes a multistep oxidative reaction involving hydrogen peroxide as the electron acceptor. The plant peroxidase-like superfamily is found in all three kingdoms of life and carries out a variety of biosynthetic and degradative functions.
Probab=100.00 E-value=5.2e-47 Score=361.50 Aligned_cols=214 Identities=22% Similarity=0.337 Sum_probs=174.7
Q ss_pred HHHHhcCCCCCcceeeeeecccc-------ccCCCceeeccCCCCCCCCCC-ccCCCCCCCCchHHHHHHHHHHHHhhCC
Q 035578 64 AQLYSQDKQVPANLLRLFFHDCF-------IMGCDASVFLDDSNGNESHPI-ERQAIPSQTLKGFDKINLIKEELEEACP 135 (377)
Q Consensus 64 ~~~~~~d~~~a~~llRL~FHDcf-------v~GcDgSilLd~~~~~~~E~~-~~~~~~N~~L~g~~~I~~iK~~le~~cp 135 (377)
......++++|+.+|||+||||| ++||||||+++. ..+|+. . +.|.+|++|+.|+.+
T Consensus 32 ~~~~~~~~~~aa~~LRL~FHDc~t~~~~~g~gGcDgSIlle~---~~~En~G~---~~n~~l~~~~~i~~~--------- 96 (264)
T cd08201 32 DCAPGPGRQAAAEWLRTAFHDMATHNVDDGTGGLDASIQYEL---DRPENIGS---GFNTTLNFFVNFYSP--------- 96 (264)
T ss_pred ccCcCCCccHHHHHHHHHHHhhcCcccCCCCCCCCcceeecC---CChhhccC---chhhccccceeeccC---------
Confidence 33445788999999999999999 889999999974 246887 4 667788888877543
Q ss_pred CCCCHHHHHHhhhHhHHHhhCCCCcccccCccCCCCccccccccCCCCCCCCHHHHHHHHHHcCCCccccceeec-cccc
Q 035578 136 GMVSCADALALATRDGILLAGGPYYPVFTGRRDSIRSYFQEATAEIPGPDDDLNKILHLFSLRGFSPRETVSLIG-AHNI 214 (377)
Q Consensus 136 ~~VScADilalAar~av~~~GGP~~~v~~GRrD~~~s~~~~a~~~LP~p~~~~~~l~~~F~~~Gls~~elVaLsG-AHTi 214 (377)
+||||||||||+|+||+.+|||.|+|++||+|+.++.+. .||.|+.++++|++.|+++||+++|||+|+| ||||
T Consensus 97 -~VScADiialAa~~AV~~~GGP~i~v~~GR~Da~~s~~~----glP~P~~~v~~l~~~Fa~~Gfs~~DmVaLsggaHTi 171 (264)
T cd08201 97 -RSSMADLIAMGVVTSVASCGGPVVPFRAGRIDATEAGQA----GVPEPQTDLGTTTESFRRQGFSTSEMIALVACGHTL 171 (264)
T ss_pred -ccCHHHHHHHHHHHHHHHcCCCeecccccCCCccccccc----cCCCCccCHHHHHHHHHHcCCChHHHheeecCCeee
Confidence 599999999999999999999999999999999988753 4999999999999999999999999999995 9999
Q ss_pred cccccccccccccccCCCCCCCCCCCHHHHHHHHhhcCCCCCCCCCCCCCCCCCCCCCCCCCccccccccccccccccCC
Q 035578 215 GKISCQFIRNRLYDFLGTGQPDPTMSDDFLVEMRVLCGDGNQTSLHGSPAPASAPAPMRSSGMRESTLGMNYYQRLSTSI 294 (377)
Q Consensus 215 G~ahc~~f~~Rl~~~~g~~~~dp~~d~~~~~~L~~~Cp~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~lD~~~~~~~ 294 (377)
|++||..|.++.- |. ...+ ...++|
T Consensus 172 G~ahc~~f~~~~~---------~g----------------~~~~-----------------------~~~p~d------- 196 (264)
T cd08201 172 GGVHSEDFPEIVP---------PG----------------SVPD-----------------------TVLQFF------- 196 (264)
T ss_pred eecccccchhhcC---------Cc----------------cccC-----------------------CCCCCC-------
Confidence 9999998876631 10 0000 123344
Q ss_pred CCCCcccHHHHHHHhcCC----------ccccchhhhccChhHHHHHHHHhhcchhHHHHHHHHHHHHHHc
Q 035578 295 SSGAGFDAHYYQNLLRGR----------GLLHADQQLMAEEKTAKLVWAYASDCGTAYRTDFARVMLKMSN 355 (377)
Q Consensus 295 ~Tp~~FDN~Yy~nl~~~~----------glL~SDq~L~~d~~T~~~V~~yA~d~~~~F~~~Fa~Am~KM~~ 355 (377)
+||..|||+||++++.+. --+.||..++....-. .++..| + +..|.+..+..+.||.+
T Consensus 197 stp~~FDn~~f~E~l~g~~~~~L~~~~~~~~~sd~r~f~~d~n~-t~~~l~-~-~~~f~~~c~~~~~~mi~ 264 (264)
T cd08201 197 DTTIQFDNKVVTEYLSGTTNNPLVVGPNNTTNSDLRIFSSDGNV-TMNELA-S-PDTFQKTCADILQRMID 264 (264)
T ss_pred CCccccchHHHHHHhcCCCCCceeecCCCCccchhhheecCccH-HHHHhc-C-hHHHHHHHHHHHHHHhC
Confidence 399999999999999874 2458999999754432 345566 6 89999999999999963
No 14
>cd08200 catalase_peroxidase_2 C-terminal non-catalytic domain of catalase-peroxidases. This is a subgroup of heme-dependent peroxidases of the plant superfamily that share a heme prosthetic group and catalyze a multistep oxidative reaction involving hydrogen peroxide as the electron acceptor. Catalase-peroxidases can exhibit both catalase and broad-spectrum peroxidase activities depending on the steady-state concentration of hydrogen peroxide. These enzymes are found in many archaeal and bacterial organisms where they neutralize potentially lethal hydrogen peroxide molecules generated during photosynthesis or stationary phase. Along with related intracellular fungal and plant peroxidases, catalase-peroxidases belong to plant peroxidase superfamily. Unlike the eukaryotic enzymes, they are typically comprised of two homologous domains that probably arose via a single gene duplication event. The heme binding motif is present only in the N-terminal domain; the function of the C-terminal do
Probab=100.00 E-value=5.2e-37 Score=296.29 Aligned_cols=221 Identities=18% Similarity=0.173 Sum_probs=176.3
Q ss_pred HHHHHHHhcCCCCCcceeeeeeccccc-------cCCCce-eeccCCCCCCCCCCccCCCCCCC--C-chHHHHHHHHHH
Q 035578 61 SKMAQLYSQDKQVPANLLRLFFHDCFI-------MGCDAS-VFLDDSNGNESHPIERQAIPSQT--L-KGFDKINLIKEE 129 (377)
Q Consensus 61 ~~v~~~~~~d~~~a~~llRL~FHDcfv-------~GcDgS-ilLd~~~~~~~E~~~~~~~~N~~--L-~g~~~I~~iK~~ 129 (377)
..+++.+....-.++.+|||+||++.+ +||+|+ |.|. .|+++ +.|.+ | +.+.+++.||++
T Consensus 17 ~~lk~~i~~~gl~~~~lvrlAWhsAgTyr~sd~rGGaNGariRl~------pe~~w---~~N~~~~L~~~~~~Le~ik~~ 87 (297)
T cd08200 17 AALKAKILASGLTVSELVSTAWASASTFRNSDKRGGANGARIRLA------PQKDW---EVNEPEELAKVLAVLEGIQKE 87 (297)
T ss_pred HHHHHHHHhcCCcHHHHHHHhhhccccccCCCCCCCCCcccccCc------cccCc---CccCcHHHHHHHHHHHHHHHH
Confidence 445666666667899999999999986 799999 6654 68888 99999 8 689999999998
Q ss_pred HHh-hCCC-CCCHHHHHHhhhHhHHHhhCC-----CCcccccCccCCCCcccccc--ccCCCCCC------------CCH
Q 035578 130 LEE-ACPG-MVSCADALALATRDGILLAGG-----PYYPVFTGRRDSIRSYFQEA--TAEIPGPD------------DDL 188 (377)
Q Consensus 130 le~-~cp~-~VScADilalAar~av~~~GG-----P~~~v~~GRrD~~~s~~~~a--~~~LP~p~------------~~~ 188 (377)
+.. .-++ .||+||+|+||+..|||.+|| |.|++.+||.|...+..... ...+|.+. ...
T Consensus 88 ~~~~~~~~~~vS~ADLivLaG~vAiE~agg~ag~~p~Ipf~pGR~Da~~~~td~~sf~~l~P~adg~rny~~~~~~~~~~ 167 (297)
T cd08200 88 FNESQSGGKKVSLADLIVLGGCAAVEKAAKDAGVDIKVPFTPGRTDATQEQTDVESFEVLEPKADGFRNYLKKGYRVPPE 167 (297)
T ss_pred hcccccCCccccHHHHHHHHhHHHHHHHHhccCCCceeccCCCCCCcccCCCCcccccccCCCCcccccccccCCCCCHH
Confidence 842 1122 699999999999999999999 99999999999987643210 11345332 134
Q ss_pred HHHHHHHHHcCCCccccceeeccc-cccccccccccccccccCCCCCCCCCCCHHHHHHHHhhcCCCCCCCCCCCCCCCC
Q 035578 189 NKILHLFSLRGFSPRETVSLIGAH-NIGKISCQFIRNRLYDFLGTGQPDPTMSDDFLVEMRVLCGDGNQTSLHGSPAPAS 267 (377)
Q Consensus 189 ~~l~~~F~~~Gls~~elVaLsGAH-TiG~ahc~~f~~Rl~~~~g~~~~dp~~d~~~~~~L~~~Cp~~~~~~~~~~~~~~~ 267 (377)
+.|++.|.++||+++|||||+||| ++|+.|..++ .+.
T Consensus 168 ~~Lrd~f~rlglsd~EmvaL~Gg~r~lG~~~~~s~-------------------------------~G~----------- 205 (297)
T cd08200 168 EMLVDKAQLLTLTAPEMTVLVGGLRVLGANYGGSK-------------------------------HGV----------- 205 (297)
T ss_pred HHHHHHHHhCCCChHHHhheecchhhcccCCCCCC-------------------------------CCC-----------
Confidence 789999999999999999999998 6888763211 011
Q ss_pred CCCCCCCCCccccccccccccccccCCCCCCcccHHHHHHHhcC--------------------Cc-----cccchhhhc
Q 035578 268 APAPMRSSGMRESTLGMNYYQRLSTSISSGAGFDAHYYQNLLRG--------------------RG-----LLHADQQLM 322 (377)
Q Consensus 268 ~~~~~~~r~~~~~~~~~~lD~~~~~~~~Tp~~FDN~Yy~nl~~~--------------------~g-----lL~SDq~L~ 322 (377)
|+.+|.+|||.||+||+.. .| .+.+|.+|.
T Consensus 206 -------------------------wT~~p~~f~N~fF~nLLd~~~~W~~~~~~~~~~~~~dr~~g~~~~~~t~~Dl~l~ 260 (297)
T cd08200 206 -------------------------FTDRPGVLTNDFFVNLLDMSTEWKPADEDDGLFEGRDRKTGEVKWTATRVDLVFG 260 (297)
T ss_pred -------------------------CcCCCCccccHHHHHHhcccceeeecCCCCCceeeccCCCCceeeccChhhhhhc
Confidence 2338999999999999952 01 267899999
Q ss_pred cChhHHHHHHHHhhcc-hhHHHHHHHHHHHHHHcCC
Q 035578 323 AEEKTAKLVWAYASDC-GTAYRTDFARVMLKMSNLG 357 (377)
Q Consensus 323 ~d~~T~~~V~~yA~d~-~~~F~~~Fa~Am~KM~~lg 357 (377)
.|++.|++|+.||.|. +++||+||++||.||.++.
T Consensus 261 sd~~~R~~ve~YA~dd~~~~F~~DF~~A~~Klmeld 296 (297)
T cd08200 261 SNSELRAVAEVYASDDAQEKFVKDFVAAWTKVMNLD 296 (297)
T ss_pred cCHHHHHHHHHHhcccchhHHHHHHHHHHHHHHhcC
Confidence 9999999999999863 7899999999999999875
No 15
>TIGR00198 cat_per_HPI catalase/peroxidase HPI. Note that the translation PID:g296476 from accession X71420 from Rhodobacter capsulatus B10 contains extensive frameshift differences from the rest of the orthologous family.
Probab=99.98 E-value=2.3e-32 Score=289.24 Aligned_cols=219 Identities=19% Similarity=0.204 Sum_probs=173.3
Q ss_pred HHHHHHHH---HhcCCCCCcceeeeeeccccc-------cCCCce-eeccCCCCCCCCCCccCCCCC--CCC-chHHHHH
Q 035578 59 VRSKMAQL---YSQDKQVPANLLRLFFHDCFI-------MGCDAS-VFLDDSNGNESHPIERQAIPS--QTL-KGFDKIN 124 (377)
Q Consensus 59 V~~~v~~~---~~~d~~~a~~llRL~FHDcfv-------~GcDgS-ilLd~~~~~~~E~~~~~~~~N--~~L-~g~~~I~ 124 (377)
|++.|... +....-..+.||||+||++.+ +|++|+ |.|. .|++. +.| .+| +.+.+++
T Consensus 430 v~~di~~lk~~i~~sgl~~~~lVr~AWhsA~Tyr~sd~rGGaNGariRl~------pe~~w---~~N~p~gL~~vl~~Le 500 (716)
T TIGR00198 430 SEGDIKELKQQILASGLSVSELVCTAWASASTFRSSDYRGGANGARIRLE------PQKNW---PVNEPTRLAKVLAVLE 500 (716)
T ss_pred HHHHHHHHHHHHHhcCCcHHHHHHHhhhhcccccCCCCCCCCCcceeecc------hhcCc---ccCCHHHHHHHHHHHH
Confidence 34444443 344455678999999999986 799998 7665 58999 999 799 7899999
Q ss_pred HHHHHHHhhCCCCCCHHHHHHhhhHhHHHhh---CCC--CcccccCccCCCCccccccccCCC---CC------------
Q 035578 125 LIKEELEEACPGMVSCADALALATRDGILLA---GGP--YYPVFTGRRDSIRSYFQEATAEIP---GP------------ 184 (377)
Q Consensus 125 ~iK~~le~~cp~~VScADilalAar~av~~~---GGP--~~~v~~GRrD~~~s~~~~a~~~LP---~p------------ 184 (377)
.||++... ..||+||+|+||+.+|||.+ ||| .+++.+||.|...... +++...| .+
T Consensus 501 ~Ik~~f~~---~~vS~ADLivLaG~vAVE~aa~~gG~~~~Vpf~pGR~Da~~~~t-d~~~~~~l~p~adgfRn~~~~~~~ 576 (716)
T TIGR00198 501 KIQAEFAK---GPVSLADLIVLGGGAAVEKAALDAGISVNVPFLPGRVDATQAMT-DAESFTPLEPIADGFRNYLKRDYA 576 (716)
T ss_pred HHHHHcCC---CcccHHHHHHHHHHHHHHHHHHhCCCCcccCcCCCCCccccCCC-CccccccCCCCCcccchhcccccc
Confidence 99998731 26999999999999999999 898 5788999999987643 2333322 11
Q ss_pred CCCHHHHHHHHHHcCCCccccceeecc-ccccccccccccccccccCCCCCCCCCCCHHHHHHHHhhcCCCCCCCCCCCC
Q 035578 185 DDDLNKILHLFSLRGFSPRETVSLIGA-HNIGKISCQFIRNRLYDFLGTGQPDPTMSDDFLVEMRVLCGDGNQTSLHGSP 263 (377)
Q Consensus 185 ~~~~~~l~~~F~~~Gls~~elVaLsGA-HTiG~ahc~~f~~Rl~~~~g~~~~dp~~d~~~~~~L~~~Cp~~~~~~~~~~~ 263 (377)
......|++.|.++|||++|||||+|| |++|++|..++ .+.
T Consensus 577 ~~~~~~l~d~a~~lglt~~EmvaL~Gg~r~lG~~~~~s~-------------------------------~G~------- 618 (716)
T TIGR00198 577 VTPEELLLDKAQLLTLTAPEMTVLIGGMRVLGANHGGSK-------------------------------HGV------- 618 (716)
T ss_pred CCHHHHHHHHHHhCCCChHHHHheecchhhccccCCCCC-------------------------------CCC-------
Confidence 123467889999999999999999999 59999874321 011
Q ss_pred CCCCCCCCCCCCCccccccccccccccccCCCCCCcccHHHHHHHhcCC--------------------c---cc--cch
Q 035578 264 APASAPAPMRSSGMRESTLGMNYYQRLSTSISSGAGFDAHYYQNLLRGR--------------------G---LL--HAD 318 (377)
Q Consensus 264 ~~~~~~~~~~~r~~~~~~~~~~lD~~~~~~~~Tp~~FDN~Yy~nl~~~~--------------------g---lL--~SD 318 (377)
|+.+|.+|||.||+||+... | ++ .+|
T Consensus 619 -----------------------------~T~~p~~f~NdfF~~LLd~~~~w~~~~~~~~~~~~~dr~tg~~~~~~t~~D 669 (716)
T TIGR00198 619 -----------------------------FTDRVGVLSNDFFVNLLDMAYEWRAADNNRYLFEGGDRQTGEVKWTATRVD 669 (716)
T ss_pred -----------------------------CcCCCCccccHHHHHHhcCCceeeecCCCCceeeeecCCCCceeeccChhh
Confidence 22289999999999998621 1 22 679
Q ss_pred hhhccChhHHHHHHHHhhcch--hHHHHHHHHHHHHHHcCCC
Q 035578 319 QQLMAEEKTAKLVWAYASDCG--TAYRTDFARVMLKMSNLGV 358 (377)
Q Consensus 319 q~L~~d~~T~~~V~~yA~d~~--~~F~~~Fa~Am~KM~~lgv 358 (377)
.+|..|++.|++|+.||+| + ++||+||++||.|+.+++-
T Consensus 670 l~~~sd~~lra~aE~YA~d-d~~~~F~~DF~~Aw~Klm~ldr 710 (716)
T TIGR00198 670 LVFGSNSILRAVAEVYAQD-DAREKFVKDFVAAWTKVMNLDR 710 (716)
T ss_pred eeeccCHHHHHHHHHHhcc-cccchHHHHHHHHHHHHHhCCC
Confidence 9999999999999999999 7 8999999999999999974
No 16
>PRK15061 catalase/hydroperoxidase HPI(I); Provisional
Probab=99.97 E-value=1.4e-31 Score=282.10 Aligned_cols=221 Identities=19% Similarity=0.179 Sum_probs=176.0
Q ss_pred HHHHHHHhcCCCCCcceeeeeeccccc-------cCCCce-eeccCCCCCCCCCCccCCCCCC--CC-chHHHHHHHHHH
Q 035578 61 SKMAQLYSQDKQVPANLLRLFFHDCFI-------MGCDAS-VFLDDSNGNESHPIERQAIPSQ--TL-KGFDKINLIKEE 129 (377)
Q Consensus 61 ~~v~~~~~~d~~~a~~llRL~FHDcfv-------~GcDgS-ilLd~~~~~~~E~~~~~~~~N~--~L-~g~~~I~~iK~~ 129 (377)
..+++.+....-..+.|||++||++.+ +|++|+ |.|. .|++. +.|. +| +.+++++.||++
T Consensus 442 ~~lk~~i~~~gl~~~~LVr~AWhsA~Tyr~sd~rGGaNGarIRl~------Pq~~w---~~N~p~~L~~vl~~LE~Ik~~ 512 (726)
T PRK15061 442 AALKAKILASGLSVSELVSTAWASASTFRGSDKRGGANGARIRLA------PQKDW---EVNEPAQLAKVLAVLEGIQAE 512 (726)
T ss_pred HHHHHHHHhcCCcHHHHHHHHHhhcccccCCCCCCCCCccceecc------cccCc---cccCHHHHHHHHHHHHHHHHH
Confidence 345555555556789999999999986 799999 7765 58999 9999 88 689999999999
Q ss_pred HHhhC-C-CCCCHHHHHHhhhHhHHHhh---CC--CCcccccCccCCCCccccccc---cCCCCCC------------CC
Q 035578 130 LEEAC-P-GMVSCADALALATRDGILLA---GG--PYYPVFTGRRDSIRSYFQEAT---AEIPGPD------------DD 187 (377)
Q Consensus 130 le~~c-p-~~VScADilalAar~av~~~---GG--P~~~v~~GRrD~~~s~~~~a~---~~LP~p~------------~~ 187 (377)
....- . ..||.||+|+||+.+|||.+ || |.+++.+||.|...... +++ ..+|... ..
T Consensus 513 f~~~~~~~~~vS~ADLivLaG~vAIE~aa~~aG~~~~VPf~pGR~Da~~~~t-d~esf~~l~P~Adgfrny~~~~~~~~~ 591 (726)
T PRK15061 513 FNAAQSGGKKVSLADLIVLGGNAAVEQAAKAAGHDVTVPFTPGRTDATQEQT-DVESFAVLEPKADGFRNYLKKGYSVSP 591 (726)
T ss_pred HhhccCCCCceeHHHHHHHHHHHHHHHHHHhCCCCcccCcCCCCCCcccCCC-CcccccccCCCCccccccccccCCCCH
Confidence 86432 1 35999999999999999998 68 99999999999987543 222 2456533 12
Q ss_pred HHHHHHHHHHcCCCccccceeeccc-cccccccccccccccccCCCCCCCCCCCHHHHHHHHhhcCCCCCCCCCCCCCCC
Q 035578 188 LNKILHLFSLRGFSPRETVSLIGAH-NIGKISCQFIRNRLYDFLGTGQPDPTMSDDFLVEMRVLCGDGNQTSLHGSPAPA 266 (377)
Q Consensus 188 ~~~l~~~F~~~Gls~~elVaLsGAH-TiG~ahc~~f~~Rl~~~~g~~~~dp~~d~~~~~~L~~~Cp~~~~~~~~~~~~~~ 266 (377)
...|++.|.++|||++|||||+||| ++|..|-.++ .+.
T Consensus 592 e~~L~d~a~~lglt~~EmvaL~Gg~r~Lg~~~~~S~-------------------------------~G~---------- 630 (726)
T PRK15061 592 EELLVDKAQLLTLTAPEMTVLVGGLRVLGANYGGSK-------------------------------HGV---------- 630 (726)
T ss_pred HHHHHHHHHhCCCChHHHhheecchhhcccCCCCCC-------------------------------CCC----------
Confidence 3789999999999999999999997 6787662211 011
Q ss_pred CCCCCCCCCCccccccccccccccccCCCCCCcccHHHHHHHhcC----------C----------c---c--ccchhhh
Q 035578 267 SAPAPMRSSGMRESTLGMNYYQRLSTSISSGAGFDAHYYQNLLRG----------R----------G---L--LHADQQL 321 (377)
Q Consensus 267 ~~~~~~~~r~~~~~~~~~~lD~~~~~~~~Tp~~FDN~Yy~nl~~~----------~----------g---l--L~SDq~L 321 (377)
|+.+|.+|||.||+||+.. . | + +.+|.+|
T Consensus 631 --------------------------~T~~p~~fsNdfFvnLLdm~~~W~~~~~~~~~ye~~Dr~tg~~~~~~t~~Dlvf 684 (726)
T PRK15061 631 --------------------------FTDRPGVLTNDFFVNLLDMGTEWKPTDEDEEVYEGRDRKTGEVKWTATRVDLVF 684 (726)
T ss_pred --------------------------CcCCCCccccHHHHHHhcCCceeeecCCCCCceeeccCCCcceeeccChhheec
Confidence 2238999999999999952 1 1 1 4789999
Q ss_pred ccChhHHHHHHHHhhcc-hhHHHHHHHHHHHHHHcCCC
Q 035578 322 MAEEKTAKLVWAYASDC-GTAYRTDFARVMLKMSNLGV 358 (377)
Q Consensus 322 ~~d~~T~~~V~~yA~d~-~~~F~~~Fa~Am~KM~~lgv 358 (377)
..|++.|++|+.||.|. +++||+||++||.|+.+++-
T Consensus 685 gsds~lRa~aEvYA~dd~~~kF~~DF~~Aw~Kvmeldr 722 (726)
T PRK15061 685 GSNSQLRALAEVYASDDAKEKFVRDFVAAWTKVMNLDR 722 (726)
T ss_pred ccCHHHHHHHHHHhcccchhHHHHHHHHHHHHHHhCCC
Confidence 99999999999999864 88999999999999999973
No 17
>COG0376 KatG Catalase (peroxidase I) [Inorganic ion transport and metabolism]
Probab=99.96 E-value=1.4e-28 Score=249.38 Aligned_cols=243 Identities=19% Similarity=0.203 Sum_probs=188.6
Q ss_pred CCCcceeeeeecccccc-------CCC-ceeeccCCCCCCCCCCccCCCCCCCC-chHHHHHHHHHHHHhhCCCCCCHHH
Q 035578 72 QVPANLLRLFFHDCFIM-------GCD-ASVFLDDSNGNESHPIERQAIPSQTL-KGFDKINLIKEELEEACPGMVSCAD 142 (377)
Q Consensus 72 ~~a~~llRL~FHDcfv~-------GcD-gSilLd~~~~~~~E~~~~~~~~N~~L-~g~~~I~~iK~~le~~cp~~VScAD 142 (377)
..+|.+|||+||-++++ |.. |.. .+..+.+. |.|.+| +++.++..||+++ +..||+||
T Consensus 93 hYGplfIRmAWHsAGTYRi~DGRGGa~~G~q------RFaPlnSW---PDN~nLDKarRLLWPIKkKY----G~kiSWaD 159 (730)
T COG0376 93 HYGPLFIRMAWHSAGTYRIGDGRGGAGGGQQ------RFAPLNSW---PDNANLDKARRLLWPIKKKY----GRKISWAD 159 (730)
T ss_pred ccccceeeeeecccCceecccCCCCCCCCce------ecccccCC---CcccchHHHHHHhhhHhHhh----cccccHhH
Confidence 47899999999999872 322 221 23344444 999999 7999999999988 66899999
Q ss_pred HHHhhhHhHHHhhCCCCcccccCccCCCCcccc-------------------------------------ccccCCCCCC
Q 035578 143 ALALATRDGILLAGGPYYPVFTGRRDSIRSYFQ-------------------------------------EATAEIPGPD 185 (377)
Q Consensus 143 ilalAar~av~~~GGP~~~v~~GRrD~~~s~~~-------------------------------------~a~~~LP~p~ 185 (377)
+|.|++.+|++.+|++.+.+..||.|-..+... +-++..|+|.
T Consensus 160 L~iLaGnvAlEsMGfktfGFa~GR~D~wepd~dvyWG~e~~wl~d~Ry~~~~~Le~PlaavqMGLIYVNPEGpng~PDpl 239 (730)
T COG0376 160 LIILAGNVALESMGFKTFGFAGGREDVWEPDEDVYWGSEKTWLGDERYSGDRDLENPLAAVQMGLIYVNPEGPNGNPDPL 239 (730)
T ss_pred hhhhhchhhhhhcCCccccccCCCCcCCCCccccccCccccccccccccccccccCchhhheeeeEEeCCCCCCCCCChh
Confidence 999999999999999999999999998765440 1234689999
Q ss_pred CCHHHHHHHHHHcCCCccccceee-ccccccccccccccccccccCCCCCCCCCCCHHHHHHHHhhcCCCCCCCCCCCCC
Q 035578 186 DDLNKILHLFSLRGFSPRETVSLI-GAHNIGKISCQFIRNRLYDFLGTGQPDPTMSDDFLVEMRVLCGDGNQTSLHGSPA 264 (377)
Q Consensus 186 ~~~~~l~~~F~~~Gls~~elVaLs-GAHTiG~ahc~~f~~Rl~~~~g~~~~dp~~d~~~~~~L~~~Cp~~~~~~~~~~~~ 264 (377)
.+..++++.|++++++++|.|||+ ||||+|++|...-.+- -+++|.-.+--.+.| +|.
T Consensus 240 ~aA~dIRetFaRMaMNDeETVALiaGGHtfGKtHGag~a~~-------vg~ePe~a~ie~qGl--------GW~------ 298 (730)
T COG0376 240 AAARDIRETFARMAMNDEETVALIAGGHTFGKTHGAGPASN-------VGPEPEAAPIEQQGL--------GWA------ 298 (730)
T ss_pred hhHHHHHHHHHHhcCCcHhhhhhhhcccccccccCCCchhh-------cCCCccccchhhhcc--------ccc------
Confidence 999999999999999999999998 7999999996542111 134554332222222 121
Q ss_pred CCCCCCCCCCCCccccccccccccccccCCCCCCcccHHHHHHHhcC---------------------------------
Q 035578 265 PASAPAPMRSSGMRESTLGMNYYQRLSTSISSGAGFDAHYYQNLLRG--------------------------------- 311 (377)
Q Consensus 265 ~~~~~~~~~~r~~~~~~~~~~lD~~~~~~~~Tp~~FDN~Yy~nl~~~--------------------------------- 311 (377)
..+.+|.+.++.+..+.. +|..||++|||.||.+|+.-
T Consensus 299 ------~~~g~G~G~dtitsGlE~---~Wt~tPT~w~n~ff~~Lf~yEWeltksPAGa~Qw~~k~~~~~~~pd~~dp~~~ 369 (730)
T COG0376 299 ------NTYGSGKGPDTITSGLEG---AWTTTPTQWSNEFFENLFNYEWELTKSPAGAWQWDAKSAAAETIPDAHDPSKK 369 (730)
T ss_pred ------cccCCCcCcccccccccc---cCCCCcchhhhHHHHHHhccceeeecCCCccccccccCccccCCCCCCCcccc
Confidence 123344455555666653 48889999999999999742
Q ss_pred --CccccchhhhccChhHHHHHHHHhhcchhHHHHHHHHHHHHHHcCCC
Q 035578 312 --RGLLHADQQLMAEEKTAKLVWAYASDCGTAYRTDFARVMLKMSNLGV 358 (377)
Q Consensus 312 --~glL~SDq~L~~d~~T~~~V~~yA~d~~~~F~~~Fa~Am~KM~~lgv 358 (377)
-.+|.+|.+|..||..+++.++|.+| ++.|.+.|++||.||.+-++
T Consensus 370 ~~p~MlttDlaLr~DP~Y~kIs~rf~e~-pd~F~~~FArAWfKLtHRDM 417 (730)
T COG0376 370 HGPMMLTTDLALRFDPEYEKISRRFLED-PDEFADAFARAWFKLTHRDM 417 (730)
T ss_pred cCceeeccchhhhcChHHHHHHHHHHhC-HHHHHHHHHHHHHHHhhccC
Confidence 25899999999999999999999999 99999999999999987543
No 18
>COG0376 KatG Catalase (peroxidase I) [Inorganic ion transport and metabolism]
Probab=99.24 E-value=4.5e-11 Score=122.74 Aligned_cols=203 Identities=22% Similarity=0.244 Sum_probs=139.7
Q ss_pred Ccceeeeeeccccc-------cCCCcee-eccCCCCCCCCCCccCCCCCCC--C-chHHHHHHHHHHHHhhCCCCCCHHH
Q 035578 74 PANLLRLFFHDCFI-------MGCDASV-FLDDSNGNESHPIERQAIPSQT--L-KGFDKINLIKEELEEACPGMVSCAD 142 (377)
Q Consensus 74 a~~llRL~FHDcfv-------~GcDgSi-lLd~~~~~~~E~~~~~~~~N~~--L-~g~~~I~~iK~~le~~cp~~VScAD 142 (377)
...++-.+|--+-+ +|.+|-- .|. ..++. +.|.. | +-+.+++.|.+... ..||.||
T Consensus 465 vs~lVstAWaSAsTfRgsDkRGGaNGaRirLa------PqkdW---evN~P~~l~kvl~~le~iq~~fn----kkvSlAD 531 (730)
T COG0376 465 VSQLVSTAWASASTFRGSDKRGGANGARIRLA------PQKDW---EVNQPAELAKVLAVLEKIQKEFN----KKVSLAD 531 (730)
T ss_pred HHHHHHHHHHhhhhccCCcccCCcCcceEeec------ccccC---CCCCHHHHHHHHHHHHHHHHHhc----CccchhH
Confidence 44455555555533 5776654 343 46777 88854 4 56788888888775 4699999
Q ss_pred HHHhhhHhHHHhh---CCCCc--ccccCccCCCCccccccccC--C-CC-----------CCCC-HHHHHHHHHHcCCCc
Q 035578 143 ALALATRDGILLA---GGPYY--PVFTGRRDSIRSYFQEATAE--I-PG-----------PDDD-LNKILHLFSLRGFSP 202 (377)
Q Consensus 143 ilalAar~av~~~---GGP~~--~v~~GRrD~~~s~~~~a~~~--L-P~-----------p~~~-~~~l~~~F~~~Gls~ 202 (377)
+|+|++..+|+.. .|-.+ |+.+||.|....... ++.. | |- -..+ -.-|+++-+-.+|+.
T Consensus 532 lIVL~G~a~ie~AAk~aG~~v~VPF~pGR~DA~qeqtD-v~sf~~LeP~aDGfRNy~~~~~~~~pe~~LvDkAqlL~Lta 610 (730)
T COG0376 532 LIVLGGNAAVEKAAKAAGFSVTVPFAPGRTDASQEQTD-VESFAVLEPIADGFRNYVKKDYVLTPEELLVDKAQLLTLTA 610 (730)
T ss_pred heeecchHHHHHHHHhcCceeeeccCCCCcccchhhcc-hhhhhcccccchhhhhhccCCCcCCHHHHHHHHHHHhccCC
Confidence 9999999999885 67655 556899999765431 1111 1 11 1112 345678888899999
Q ss_pred cccceeeccccc-cccccccccccccccCCCCCCCCCCCHHHHHHHHhhcCCCCCCCCCCCCCCCCCCCCCCCCCccccc
Q 035578 203 RETVSLIGAHNI-GKISCQFIRNRLYDFLGTGQPDPTMSDDFLVEMRVLCGDGNQTSLHGSPAPASAPAPMRSSGMREST 281 (377)
Q Consensus 203 ~elVaLsGAHTi-G~ahc~~f~~Rl~~~~g~~~~dp~~d~~~~~~L~~~Cp~~~~~~~~~~~~~~~~~~~~~~r~~~~~~ 281 (377)
-||++|+||-.+ |. ||.|+ .
T Consensus 611 pemtVLiGGlRvLg~-----------n~g~s-------------------------~----------------------- 631 (730)
T COG0376 611 PEMTVLIGGLRVLGA-----------NYGGS-------------------------K----------------------- 631 (730)
T ss_pred ccceEEEcceEeecc-----------CCCCC-------------------------c-----------------------
Confidence 999999987543 32 22111 0
Q ss_pred cccccccccccCCCCCCcccHHHHHHHhcC----------Ccc---------------ccchhhhccChhHHHHHHHHhh
Q 035578 282 LGMNYYQRLSTSISSGAGFDAHYYQNLLRG----------RGL---------------LHADQQLMAEEKTAKLVWAYAS 336 (377)
Q Consensus 282 ~~~~lD~~~~~~~~Tp~~FDN~Yy~nl~~~----------~gl---------------L~SDq~L~~d~~T~~~V~~yA~ 336 (377)
..++-| .|..+.|.||.||+.. +++ -..|..+-+++..|.+.+.||.
T Consensus 632 ~GVfT~--------~pg~LtndFFvnLlDM~~~W~~~~~~~~~feg~DrktG~~kwt~trvDLvfGsns~LRA~aEVYa~ 703 (730)
T COG0376 632 HGVFTD--------RPGVLTNDFFVNLLDMGTEWKPTDDARGLFEGRDRKTGEVKWTATRVDLVFGSNSELRALAEVYAS 703 (730)
T ss_pred cceecc--------CcccccchhhhhhhhccceeeeccccccceeccccccCceEeeeeEEeEEecCcHHHHHHHHHHhc
Confidence 122222 5778888888888752 111 2578888889999999999997
Q ss_pred cc-hhHHHHHHHHHHHHHHcCC
Q 035578 337 DC-GTAYRTDFARVMLKMSNLG 357 (377)
Q Consensus 337 d~-~~~F~~~Fa~Am~KM~~lg 357 (377)
+. +++|.+||++||.|..++.
T Consensus 704 dda~ekFv~DFvaaw~kVMn~D 725 (730)
T COG0376 704 DDAKEKFVKDFVAAWTKVMNLD 725 (730)
T ss_pred cchHHHHHHHHHHHHHHHhccc
Confidence 65 8999999999999999875
No 19
>PTZ00411 transaldolase-like protein; Provisional
Probab=51.93 E-value=1.1e+02 Score=30.97 Aligned_cols=66 Identities=17% Similarity=0.231 Sum_probs=35.3
Q ss_pred CCHHHHHHhhhHhHH--HhhCCCCcccccCccCCCCccccccccCCCCC---CCCHHHHHHHHHHcCCCcc
Q 035578 138 VSCADALALATRDGI--LLAGGPYYPVFTGRRDSIRSYFQEATAEIPGP---DDDLNKILHLFSLRGFSPR 203 (377)
Q Consensus 138 VScADilalAar~av--~~~GGP~~~v~~GRrD~~~s~~~~a~~~LP~p---~~~~~~l~~~F~~~Gls~~ 203 (377)
|.|-=.+.|....|+ ...|-..+..++||-+-..-.+.......+.. -..+.++.+.|+..|+..+
T Consensus 161 I~~N~TlvFS~~QA~aaaeAGa~~ISPfVGRi~d~~~~~~~~~~~~~~~~~Gv~~v~~i~~~~k~~g~~T~ 231 (333)
T PTZ00411 161 IHCNLTLLFSFAQAVACAQAGVTLISPFVGRILDWYKKPEKAESYVGAQDPGVISVTKIYNYYKKHGYKTI 231 (333)
T ss_pred CceeEeEecCHHHHHHHHHcCCCEEEeecchHHHhcccccccccccccCCchHHHHHHHHHHHHHcCCCeE
Confidence 343333444444443 23477788999999855322111111111111 2346788888999898653
No 20
>PF11895 DUF3415: Domain of unknown function (DUF3415); InterPro: IPR024589 Peroxidases are haem-containing enzymes that use hydrogen peroxide as the electron acceptor to catalyse a number of oxidative reactions. Peroxidases are found in bacteria, fungi, plants and animals. Fungal ligninases are extracellular haem enzymes involved in the degradation of lignin. They include lignin peroxidases (LiPs), manganese-dependent peroxidases (MnPs) and versatile peroxidases, which combine the substrate-specificity characteristics of the other two []. In MnP, Mn2+ serves as the reducing substrate []. It is commonly thought that the plant polymer lignin is the second most abundant organic compound on Earth, exceeded only by cellulose. Higher plants synthesise vast quantities of insoluble macromolecules, including lignins. Lignin is an amorphous three-dimensional aromatic biopolymer composed of oxyphenylpropane units. Biodegradation of lignins is slow - it is probable that their decomposition is the rate-limiting step in the biospheric carbon-oxygen cycle, which is mediated almost entirely by the catabolic activities of microorganisms. The white-rot fungi are able extensively to decompose all the important structural components of wood, including both cellulose and lignin. Under the proper environmental conditions, white-rot fungi completely degrade all structural components of lignin, with ultimate formation of CO2 and H2O. The first step in lignin degradation is depolymerisation, catalysed by the LiPs (ligninases). LiPs are secreted, along with hydrogen peroxide (H2O2), by white-rot fungi under conditions of nutrient limitation. The enzymes are not only important in lignin biodegradation, but are also potentially valuable in chemical waste disposal because of their ability to degrade environmental pollutants []. To date, 3D structures have been determined for LiP [] and MnP [] from Phanerochaete chrysosporium (White-rot fungus), and for the fungal peroxidase from Arthromyces ramosus []. All these proteins share the same architecture and consist of 2 all-alpha domains, between which is embedded the haem group. The helical topography of LiPs is nearly identical to that of yeast cytochrome c peroxidase (CCP) [], despite the former having 4 disulphide bonds, which are absent in CCP (MnP has an additional disulphide bond at the C terminus). This uncharacterised C-terminal domain is found in fungal ligninases. It is about 80 amino acids in length and associated with Pfam:PF00141.; PDB: 1B85_B 1B82_A 1B80_A 1YYG_A 1YZP_A 1MNP_A 1MN1_A 1YZR_A 1MN2_A 3M8M_A ....
Probab=50.35 E-value=13 Score=30.04 Aligned_cols=18 Identities=28% Similarity=0.460 Sum_probs=15.3
Q ss_pred HHHHHHHHHHHHHHcCCC
Q 035578 341 AYRTDFARVMLKMSNLGV 358 (377)
Q Consensus 341 ~F~~~Fa~Am~KM~~lgv 358 (377)
+..++|..||.||+.||-
T Consensus 2 ~m~~~F~~am~KlavLG~ 19 (80)
T PF11895_consen 2 KMQSAFKAAMAKLAVLGH 19 (80)
T ss_dssp HHHHHHHHHHHHHCTTTS
T ss_pred hHHHHHHHHHHHHHHhcC
Confidence 456899999999999974
No 21
>PRK12346 transaldolase A; Provisional
Probab=45.02 E-value=1.4e+02 Score=30.06 Aligned_cols=65 Identities=12% Similarity=0.096 Sum_probs=38.0
Q ss_pred CCHHHHHHhhhHhHHH--hhCCCCcccccCccCCCCccccccccCCCC----CCCCHHHHHHHHHHcCCCcc
Q 035578 138 VSCADALALATRDGIL--LAGGPYYPVFTGRRDSIRSYFQEATAEIPG----PDDDLNKILHLFSLRGFSPR 203 (377)
Q Consensus 138 VScADilalAar~av~--~~GGP~~~v~~GRrD~~~s~~~~a~~~LP~----p~~~~~~l~~~F~~~Gls~~ 203 (377)
|+|-=.+.|....++. ..|-..+..++||-|-..-.... ...++. +-..+.++.+.|++.|+..+
T Consensus 150 I~~n~TliFS~~Qa~~aa~AGa~~ISPfVgRi~d~~~~~~~-~~~~~~~~~~Gv~~v~~i~~~~k~~~~~T~ 220 (316)
T PRK12346 150 INCNLTLLFSFAQARACAEAGVFLISPFVGRIYDWYQARKP-MDPYVVEEDPGVKSVRNIYDYYKQHRYETI 220 (316)
T ss_pred CceeEEEecCHHHHHHHHHcCCCEEEecccHHHHhhhhccc-cccccccCCChHHHHHHHHHHHHHcCCCcE
Confidence 5555445555555543 35778889999998764322111 111221 12347788889989898754
No 22
>PRK12309 transaldolase/EF-hand domain-containing protein; Provisional
Probab=39.97 E-value=2.9e+02 Score=28.61 Aligned_cols=65 Identities=18% Similarity=0.311 Sum_probs=37.5
Q ss_pred CCHHHHHHhhhHhHHH--hhCCCCcccccCccCCCCccccccccCCCCCC----CCHHHHHHHHHHcCCCcc
Q 035578 138 VSCADALALATRDGIL--LAGGPYYPVFTGRRDSIRSYFQEATAEIPGPD----DDLNKILHLFSLRGFSPR 203 (377)
Q Consensus 138 VScADilalAar~av~--~~GGP~~~v~~GRrD~~~s~~~~a~~~LP~p~----~~~~~l~~~F~~~Gls~~ 203 (377)
|.|-=.+.+....|+. ..|-..+..+.||.|-..-...+ ...+|... ..+.++.+.|+..|+..+
T Consensus 155 I~~n~TlvFS~~QA~aaaeAGa~~ISPfVgRi~dw~~~~~g-~~~~~~~~dpGv~~v~~i~~~~~~~~~~T~ 225 (391)
T PRK12309 155 IHCNLTLLFGFHQAIACAEAGVTLISPFVGRILDWYKKETG-RDSYPGAEDPGVQSVTQIYNYYKKFGYKTE 225 (391)
T ss_pred CceeeeeecCHHHHHHHHHcCCCEEEeecchhhhhhhhccC-CCccccccchHHHHHHHHHHHHHhcCCCcE
Confidence 4444444555544443 34778889999998763322111 11244322 247788889999898654
No 23
>TIGR00874 talAB transaldolase. This family includes the majority of known and predicted transaldolase sequences, including E. coli TalA and TalB. It excluded two other families. The first includes E. coli transaldolase-like protein TalC. The second family includes the putative transaldolases of Helicobacter pylori and Mycobacterium tuberculosis.
Probab=32.45 E-value=3.6e+02 Score=27.23 Aligned_cols=67 Identities=16% Similarity=0.178 Sum_probs=36.8
Q ss_pred CCHHHHHHhhhHhHH--HhhCCCCcccccCccCCCCccccccccCCC----CCCCCHHHHHHHHHHcCCCcccc
Q 035578 138 VSCADALALATRDGI--LLAGGPYYPVFTGRRDSIRSYFQEATAEIP----GPDDDLNKILHLFSLRGFSPRET 205 (377)
Q Consensus 138 VScADilalAar~av--~~~GGP~~~v~~GRrD~~~s~~~~a~~~LP----~p~~~~~~l~~~F~~~Gls~~el 205 (377)
|+|-=.+.|....|+ ...|-..+..+.||-+-..-...+.. ..+ ++-..+.++.+.|++.|+..+=|
T Consensus 149 I~vN~TliFS~~Qa~aaa~AGa~~ISPFVgRi~dw~~~~~g~~-~~~~~~d~Gv~~v~~i~~~~k~~g~~T~Im 221 (317)
T TIGR00874 149 IHCNLTLLFSFVQAIACAEAKVTLISPFVGRILDWYKAATGKK-EYSIEEDPGVASVKKIYNYYKKHGYPTEVM 221 (317)
T ss_pred CceeeeeecCHHHHHHHHHcCCCEEEeecchHhHhhhhccCcc-ccccccCchHHHHHHHHHHHHHcCCCcEEE
Confidence 333333344444443 33577888999999865321111000 111 12345778888999999876533
No 24
>PRK05269 transaldolase B; Provisional
Probab=28.17 E-value=4.1e+02 Score=26.71 Aligned_cols=97 Identities=21% Similarity=0.183 Sum_probs=51.1
Q ss_pred CCHHHHHHhhhHhHH--HhhCCCCcccccCccCCCCccccccccCCC---CCCCCHHHHHHHHHHcCCCccccceeeccc
Q 035578 138 VSCADALALATRDGI--LLAGGPYYPVFTGRRDSIRSYFQEATAEIP---GPDDDLNKILHLFSLRGFSPRETVSLIGAH 212 (377)
Q Consensus 138 VScADilalAar~av--~~~GGP~~~v~~GRrD~~~s~~~~a~~~LP---~p~~~~~~l~~~F~~~Gls~~elVaLsGAH 212 (377)
|.|-=.+.|....|+ ...|-..+..+.||-|-..-...+....-+ ++-..+.++.+.|++.|+..+-|. |
T Consensus 151 I~vn~TlvFs~~Qa~~aa~AGa~~ISPfVgRi~d~~~~~~~~~~~~~~~~~Gv~~v~~i~~~~k~~~~~t~im~----A- 225 (318)
T PRK05269 151 INCNLTLLFSFAQARACAEAGVFLISPFVGRILDWYKKNTGKKEYAPAEDPGVVSVTKIYNYYKKHGYKTVVMG----A- 225 (318)
T ss_pred CceeEeEecCHHHHHHHHHcCCCEEEeeccHHHHHhhhcccccccCcCCCcHHHHHHHHHHHHHHcCCCceEEe----e-
Confidence 444333444444443 334777889999998753221100000011 123457788889999999876333 2
Q ss_pred ccccccccccccccc--ccCCCCCCC-CCCCHHHHHHHHhh
Q 035578 213 NIGKISCQFIRNRLY--DFLGTGQPD-PTMSDDFLVEMRVL 250 (377)
Q Consensus 213 TiG~ahc~~f~~Rl~--~~~g~~~~d-p~~d~~~~~~L~~~ 250 (377)
+|++..+ ...| .| =+++|...++|...
T Consensus 226 --------Sfrn~~~v~~laG---~d~vTi~p~ll~~l~~~ 255 (318)
T PRK05269 226 --------SFRNTGQILELAG---CDRLTISPALLEELAAS 255 (318)
T ss_pred --------ccCCHHHHHHHhC---CCeEECCHHHHHHHHhc
Confidence 2222111 1112 22 27889999988753
No 25
>cd00957 Transaldolase_TalAB Transaldolases including both TalA and TalB. The enzyme catalyses the reversible transfer of a dyhydroxyacetone moiety, derived from fructose-6-phosphate to erythrose-4-phosphate yielding sedoheptulose-7-phosphate and glyceraldehyde-3-phosphate. The catalytic mechanism is similar to other class I aldolases. The enzyme is found in the non-oxidative branch of the pentose phosphate pathway and forms a dimer in solution.
Probab=26.78 E-value=2.2e+02 Score=28.59 Aligned_cols=68 Identities=15% Similarity=0.198 Sum_probs=37.9
Q ss_pred CCHHHHHHhhhHhHHHh--hCCCCcccccCccCCCCccccccccCCCC----CCCCHHHHHHHHHHcCCCccccc
Q 035578 138 VSCADALALATRDGILL--AGGPYYPVFTGRRDSIRSYFQEATAEIPG----PDDDLNKILHLFSLRGFSPRETV 206 (377)
Q Consensus 138 VScADilalAar~av~~--~GGP~~~v~~GRrD~~~s~~~~a~~~LP~----p~~~~~~l~~~F~~~Gls~~elV 206 (377)
|+|-=.+.|....|+.. .|-..+..+.||-|-..-...+. ...+. +-..+.++.+.|++.|+..+=|.
T Consensus 149 I~vn~TlvFS~~Qa~~aa~AGa~~ISPfVgRi~d~~~~~~~~-~~~~~~~d~Gv~~v~~i~~~~~~~~~~T~vma 222 (313)
T cd00957 149 IHCNLTLLFSFAQAVACAEAGVTLISPFVGRILDWYKKHSGD-KAYTAEEDPGVASVKKIYNYYKKFGYKTKVMG 222 (313)
T ss_pred CceeeeeecCHHHHHHHHHcCCCEEEeecchHHHhhhhcccc-ccCCccCCcHHHHHHHHHHHHHHcCCCcEEEe
Confidence 45444445555544433 47777889999987532111000 01111 12347788889999999765443
No 26
>PF15240 Pro-rich: Proline-rich
Probab=24.25 E-value=62 Score=30.07 Aligned_cols=17 Identities=24% Similarity=0.417 Sum_probs=12.9
Q ss_pred HHHHHHHHHHhccCCCC
Q 035578 7 YVVLVISLILSLRNPKR 23 (377)
Q Consensus 7 ~~~~~~~~~~~~~~~~~ 23 (377)
+||||.++||+|+|+-.
T Consensus 2 LlVLLSvALLALSSAQ~ 18 (179)
T PF15240_consen 2 LLVLLSVALLALSSAQS 18 (179)
T ss_pred hhHHHHHHHHHhhhccc
Confidence 56777778889988863
No 27
>COG3763 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=23.82 E-value=42 Score=26.54 Aligned_cols=29 Identities=10% Similarity=0.293 Sum_probs=24.8
Q ss_pred HHHHHHHHHHhcCCCCCcceeeeeecccc
Q 035578 58 TVRSKMAQLYSQDKQVPANLLRLFFHDCF 86 (377)
Q Consensus 58 iV~~~v~~~~~~d~~~a~~llRL~FHDcf 86 (377)
+.|+.+.+.++++|.+-...||+-+--.+
T Consensus 24 iark~~~k~lk~NPpine~~iR~M~~qmG 52 (71)
T COG3763 24 IARKQMKKQLKDNPPINEEMIRMMMAQMG 52 (71)
T ss_pred HHHHHHHHHHhhCCCCCHHHHHHHHHHhC
Confidence 57999999999999999999998776543
No 28
>KOG0427 consensus Ubiquitin conjugating enzyme [Posttranslational modification, protein turnover, chaperones]
Probab=20.15 E-value=1.4e+02 Score=26.57 Aligned_cols=26 Identities=27% Similarity=0.557 Sum_probs=19.2
Q ss_pred CCCcCccccCChhHHHHHHHHHHHHHhcCCCCCcceeeeeecc
Q 035578 42 RLEYDYYRDKCPDAEKTVRSKMAQLYSQDKQVPANLLRLFFHD 84 (377)
Q Consensus 42 ~L~~~fY~~sCP~~e~iV~~~v~~~~~~d~~~a~~llRL~FHD 84 (377)
...-++|-++|.+- -.|.=.|-+|||
T Consensus 133 P~Dn~~Yvk~C~~g-----------------rsPk~TrWwfHD 158 (161)
T KOG0427|consen 133 PTDNDRYVKNCKNG-----------------RSPKETRWWFHD 158 (161)
T ss_pred CCccchhhhhccCC-----------------CCcccceeeecc
Confidence 35667999999532 456667999998
No 29
>TIGR02738 TrbB type-F conjugative transfer system pilin assembly thiol-disulfide isomerase TrbB. This protein is part of a large group of proteins involved in conjugative transfer of plasmid DNA, specifically the F-type system. This protein has been predicted to contain a thioredoxin fold, contains a conserved pair of cysteines and has been shown to function as a thiol disulfide isomerase by complementation of an Ecoli DsbA defect. The protein is believed to be involved in pilin assembly. The protein is closely related to TraF (TIGR02739) which is somewhat longer, lacks the cysteine motif and is apparently not functional as a disulfide bond isomerase.
Probab=20.15 E-value=94 Score=27.68 Aligned_cols=10 Identities=30% Similarity=0.856 Sum_probs=8.6
Q ss_pred cCccccCChh
Q 035578 45 YDYYRDKCPD 54 (377)
Q Consensus 45 ~~fY~~sCP~ 54 (377)
.+||+.+||-
T Consensus 55 vnFWAsWCpp 64 (153)
T TIGR02738 55 VFFYQSTCPY 64 (153)
T ss_pred EEEECCCChh
Confidence 6899999984
Done!