BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 035579
(814 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|4FCG|A Chain A, Structure Of The Leucine-Rich Repeat Domain Of The Type
Iii Effector Xcv3220 (Xopl)
Length = 328
Score = 50.1 bits (118), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 66/266 (24%), Positives = 119/266 (44%), Gaps = 44/266 (16%)
Query: 322 KSHNELLQDICSLRRLTIRSCPKLQSLVAEEEKDQQQQLCELSCRLEYLILSCCEGLVKL 381
K+ +LL+D R+ + +L+S+ + DQ +L L ++ + GL +L
Sbjct: 69 KATADLLEDATQPGRVAL----ELRSVPLPQFPDQAFRLSHL----QHXTIDAA-GLXEL 119
Query: 382 PQSSLSLCSLREIGIYKCSSLVSFP-EVALPSKLEKIHIGACDALKSLPEAWMCDTNSSL 440
P + L + + + + L + P +A ++L ++ I AC L LPE + T++S
Sbjct: 120 PDTXQQFAGLETLTLAR-NPLRALPASIASLNRLRELSIRACPELTELPEP-LASTDASG 177
Query: 441 E---ILYIEGCRSLTYIAAVQLPSSLKNLQIHGCYNIKTLTVEEGIPXXXXXXXXXXILE 497
E ++ ++ R L + LP+S+ NLQ N+K+L +
Sbjct: 178 EHQGLVNLQSLR-LEWTGIRSLPASIANLQ-----NLKSLKIRNSP-------------- 217
Query: 498 HLSIVGCPSLTCIFSKNELPATLESLSVYKCSKLESIAERLDNNTSLETIGINFCENLKI 557
LS +G P++ + LP LE L + C+ L + L+ + + C NL
Sbjct: 218 -LSALG-PAI------HHLP-KLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLT 268
Query: 558 LPSGLHNLRQLREITIQRCGNLVSFP 583
LP +H L QL ++ ++ C NL P
Sbjct: 269 LPLDIHRLTQLEKLDLRGCVNLSRLP 294
Score = 37.4 bits (85), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 27/77 (35%), Positives = 35/77 (45%), Gaps = 10/77 (12%)
Query: 661 RFSSLRHLTIDGCDDDMVSFPPEDKRLGTALPLPASLTDLEIGRFPNLERLSSSIVDLQN 720
R S L+H TID + P ++ A L L + R P L L +SI L
Sbjct: 102 RLSHLQHXTIDAAG--LXELPDTXQQF-------AGLETLTLARNP-LRALPASIASLNR 151
Query: 721 LTELCLRDCPKLKYFPE 737
L EL +R CP+L PE
Sbjct: 152 LRELSIRACPELTELPE 168
Score = 35.8 bits (81), Expect = 0.087, Method: Compositional matrix adjust.
Identities = 55/183 (30%), Positives = 75/183 (40%), Gaps = 28/183 (15%)
Query: 555 LKILPSGLHNLRQLREITIQRCGNLVSFPEGGLPCAKLSELRIFQCERLEALPKGLHNLT 614
L+ LP+ + +L +LRE++I+ C L PE P A Q GL NL
Sbjct: 139 LRALPASIASLNRLRELSIRACPELTELPE---PLASTDASGEHQ---------GLVNLQ 186
Query: 615 SLQ-ELTIGGALPSLEEDGLPTNLHSLDIRGNMEIWKSMIERGRGFHRFSSLRHLTIDGC 673
SL+ E T +LP+ + NL SL IR + + G H L L + GC
Sbjct: 187 SLRLEWTGIRSLPASIANL--QNLKSLKIRNS-----PLSALGPAIHHLPKLEELDLRGC 239
Query: 674 DDDMVSFPPEDKRLGTALPLPASLTDLEIGRFPNLERLSSSIVDLQNLTELCLRDCPKLK 733
+ ++PP G P L L + NL L I L L +L LR C L
Sbjct: 240 -TALRNYPPI---FGGRAP----LKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLS 291
Query: 734 YFP 736
P
Sbjct: 292 RLP 294
Score = 29.6 bits (65), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 28/117 (23%), Positives = 50/117 (42%), Gaps = 6/117 (5%)
Query: 497 EHLSIVGCPSLTCIFSK-NELPATLESLSVYKC-----SKLESIAERLDNNTSLETIGIN 550
EH +V SL ++ LPA++ +L K S L ++ + + LE + +
Sbjct: 178 EHQGLVNLQSLRLEWTGIRSLPASIANLQNLKSLKIRNSPLSALGPAIHHLPKLEELDLR 237
Query: 551 FCENLKILPSGLHNLRQLREITIQRCGNLVSFPEGGLPCAKLSELRIFQCERLEALP 607
C L+ P L+ + ++ C NL++ P +L +L + C L LP
Sbjct: 238 GCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLP 294
>pdb|3ZYO|A Chain A, Crystal Structure Of The N-Terminal Leucine Rich Repeats
And Immunoglobulin Domain Of Netrin-G Ligand-3
Length = 411
Score = 36.2 bits (82), Expect = 0.075, Method: Compositional matrix adjust.
Identities = 24/69 (34%), Positives = 40/69 (57%), Gaps = 3/69 (4%)
Query: 366 RLEYLILSCCEGLVKLPQSSLSLCSLREIGIYKCSSLVSFPEVALP-SKLEKIHIGACDA 424
RLEY+ + EGLV L +L +C+L++I ++LV E+ L ++L+ I G+
Sbjct: 143 RLEYISEAAFEGLVNLRYLNLGMCNLKDIP--NLTALVRLEELELSGNRLDLIRPGSFQG 200
Query: 425 LKSLPEAWM 433
L SL + W+
Sbjct: 201 LTSLRKLWL 209
>pdb|3ZYN|A Chain A, Crystal Structure Of The N-Terminal Leucine Rich Repeats
Of Netrin-G Ligand-3
pdb|3ZYN|B Chain B, Crystal Structure Of The N-Terminal Leucine Rich Repeats
Of Netrin-G Ligand-3
Length = 321
Score = 35.8 bits (81), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 24/69 (34%), Positives = 40/69 (57%), Gaps = 3/69 (4%)
Query: 366 RLEYLILSCCEGLVKLPQSSLSLCSLREIGIYKCSSLVSFPEVALP-SKLEKIHIGACDA 424
RLEY+ + EGLV L +L +C+L++I ++LV E+ L ++L+ I G+
Sbjct: 143 RLEYISEAAFEGLVNLRYLNLGMCNLKDIP--NLTALVRLEELELSGNRLDLIRPGSFQG 200
Query: 425 LKSLPEAWM 433
L SL + W+
Sbjct: 201 LTSLRKLWL 209
>pdb|3PXH|A Chain A, Tandem Ig Domains Of Tyrosine Phosphatase Lar
Length = 201
Score = 32.0 bits (71), Expect = 1.4, Method: Composition-based stats.
Identities = 23/93 (24%), Positives = 49/93 (52%), Gaps = 9/93 (9%)
Query: 565 LRQLREITIQRCGNLVSFPEGGLPCAKLSELRIFQCERLEALPKGLHNLTSLQELTIGGA 624
+++ ++++ QR ++ F +G ++ LR+ +R EA+ + SL E+
Sbjct: 42 MKKGKKVSSQRF-EVIEFDDGAGSVLRIQPLRV---QRDEAIYECTAT-NSLGEINTSAK 96
Query: 625 LPSLEEDGLPTNLHSLDIRGNMEIWKSMIERGR 657
L LEED LP+ ++D+ +++ +E+GR
Sbjct: 97 LSVLEEDQLPSGFPTIDMGPQLKV----VEKGR 125
>pdb|3ZYJ|A Chain A, Netring1 In Complex With Ngl1
pdb|3ZYJ|C Chain C, Netring1 In Complex With Ngl1
Length = 440
Score = 31.6 bits (70), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 23/69 (33%), Positives = 34/69 (49%), Gaps = 3/69 (4%)
Query: 366 RLEYLILSCCEGLVKLPQSSLSLCSLREIGIYKCSSLVSFPEVALP-SKLEKIHIGACDA 424
RL Y+ EGL L +L++C+LREI + L+ E+ L + L I G+
Sbjct: 172 RLSYISEGAFEGLSNLRYLNLAMCNLREIP--NLTPLIKLDELDLSGNHLSAIRPGSFQG 229
Query: 425 LKSLPEAWM 433
L L + WM
Sbjct: 230 LMHLQKLWM 238
>pdb|4E36|A Chain A, Crystal Structure Of The Human Endoplasmic Reticulum
Aminopeptidase 2 Variant N392k
pdb|4E36|B Chain B, Crystal Structure Of The Human Endoplasmic Reticulum
Aminopeptidase 2 Variant N392k
Length = 967
Score = 30.4 bits (67), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 22/80 (27%), Positives = 34/80 (42%), Gaps = 10/80 (12%)
Query: 23 LGIGKLTCLQTLSNFVVGKDSGSRLPELKLLTYLRGTLHISKLENVTDIGDAKEAQLDVK 82
+G G+LT + L + S L+ L+YL H+ N++DI
Sbjct: 670 VGAGRLTLDKALDMTYYLQHETSSPALLEGLSYLESFYHMMDRRNISDIS---------- 719
Query: 83 ENLRELLLQWTRSTDGSSSW 102
ENL+ LLQ+ + SW
Sbjct: 720 ENLKRYLLQYFKPVIDRQSW 739
>pdb|3SE6|A Chain A, Crystal Structure Of The Human Endoplasmic Reticulum
Aminopeptidase 2
pdb|3SE6|B Chain B, Crystal Structure Of The Human Endoplasmic Reticulum
Aminopeptidase 2
Length = 967
Score = 30.4 bits (67), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 22/80 (27%), Positives = 34/80 (42%), Gaps = 10/80 (12%)
Query: 23 LGIGKLTCLQTLSNFVVGKDSGSRLPELKLLTYLRGTLHISKLENVTDIGDAKEAQLDVK 82
+G G+LT + L + S L+ L+YL H+ N++DI
Sbjct: 670 VGAGRLTLDKALDMTYYLQHETSSPALLEGLSYLESFYHMMDRRNISDIS---------- 719
Query: 83 ENLRELLLQWTRSTDGSSSW 102
ENL+ LLQ+ + SW
Sbjct: 720 ENLKRYLLQYFKPVIDRQSW 739
>pdb|1CQZ|A Chain A, Crystal Structure Of Murine Soluble Epoxide Hydrolase.
pdb|1CQZ|B Chain B, Crystal Structure Of Murine Soluble Epoxide Hydrolase.
pdb|1CR6|A Chain A, Crystal Structure Of Murine Soluble Epoxide Hydrolase
Complexed With Cpu Inhibitor
pdb|1CR6|B Chain B, Crystal Structure Of Murine Soluble Epoxide Hydrolase
Complexed With Cpu Inhibitor
pdb|1EK1|A Chain A, Crystal Structure Of Murine Soluble Epoxide Hydrolase
Complexed With Ciu Inhibitor
pdb|1EK1|B Chain B, Crystal Structure Of Murine Soluble Epoxide Hydrolase
Complexed With Ciu Inhibitor
pdb|1EK2|A Chain A, Crystal Structure Of Murine Soluble Epoxide Hydrolase
Complexed With Cdu Inhibitor
pdb|1EK2|B Chain B, Crystal Structure Of Murine Soluble Epoxide Hydrolase
Complexed With Cdu Inhibitor
Length = 554
Score = 30.4 bits (67), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 20/73 (27%), Positives = 37/73 (50%), Gaps = 3/73 (4%)
Query: 311 INDMKEQTYMWKSHNE-LLQDICSLRRLTIRSCPKLQSLVAEEEKDQQ--QQLCELSCRL 367
I+ + Q +S N +LQ +L++ +C + + + +K Q +CELS
Sbjct: 88 ISQIFSQAMAARSINRPMLQAAIALKKKGFTTCIVTNNWLDDGDKRDSLAQMMCELSQHF 147
Query: 368 EYLILSCCEGLVK 380
++LI SC G++K
Sbjct: 148 DFLIESCQVGMIK 160
>pdb|4H09|A Chain A, Crystal Structure Of A Hypothetical Leucine Rich Repeat
Protein (Eubven_01088) From Eubacterium Ventriosum Atcc
27560 At 2.50 A Resolution
pdb|4H09|B Chain B, Crystal Structure Of A Hypothetical Leucine Rich Repeat
Protein (Eubven_01088) From Eubacterium Ventriosum Atcc
27560 At 2.50 A Resolution
pdb|4H09|C Chain C, Crystal Structure Of A Hypothetical Leucine Rich Repeat
Protein (Eubven_01088) From Eubacterium Ventriosum Atcc
27560 At 2.50 A Resolution
pdb|4H09|D Chain D, Crystal Structure Of A Hypothetical Leucine Rich Repeat
Protein (Eubven_01088) From Eubacterium Ventriosum Atcc
27560 At 2.50 A Resolution
pdb|4H09|E Chain E, Crystal Structure Of A Hypothetical Leucine Rich Repeat
Protein (Eubven_01088) From Eubacterium Ventriosum Atcc
27560 At 2.50 A Resolution
Length = 379
Score = 29.6 bits (65), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 35/154 (22%), Positives = 63/154 (40%), Gaps = 14/154 (9%)
Query: 407 EVALPSKLEKIHIGACDALKSLPEAWMCDTNSSLEILYIEGCRSLTYIAAVQLPSSLKNL 466
E +PS ++ + K+L + + ++L G ++L IA + +S+ +
Sbjct: 198 EFTIPSTVKTVTAYGFSYGKNLKKITITSGVTTLGDGAFYGXKALDEIAIPKNVTSIGSF 257
Query: 467 QIHGCYNIKTLTVEEGIPXXXXXXXXXXILEHLSIVGCPSLTCIFSKNELPATLESLSVY 526
+ C +KTL + + +L GC +LT + N TLE
Sbjct: 258 LLQNCTALKTLNFYAKVKT----------VPYLLCSGCSNLTKVVXDNSAIETLEPRVFX 307
Query: 527 KCSKLESIAERLDNNTSLETIGINFCENLKILPS 560
C KL S+ T+L+TI + +N K L +
Sbjct: 308 DCVKLSSVTLP----TALKTIQVYAFKNCKALST 337
>pdb|3ZYI|A Chain A, Netring2 In Complex With Ngl2
Length = 452
Score = 29.3 bits (64), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 20/76 (26%), Positives = 39/76 (51%), Gaps = 3/76 (3%)
Query: 366 RLEYLILSCCEGLVKLPQSSLSLCSLREIGIYKCSSLVSFPEVALP-SKLEKIHIGACDA 424
+LEY+ EGL L +L +C+++++ + LV E+ + + +I G+
Sbjct: 183 KLEYISEGAFEGLFNLKYLNLGMCNIKDMP--NLTPLVGLEELEMSGNHFPEIRPGSFHG 240
Query: 425 LKSLPEAWMCDTNSSL 440
L SL + W+ ++ SL
Sbjct: 241 LSSLKKLWVMNSQVSL 256
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.137 0.419
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 23,514,192
Number of Sequences: 62578
Number of extensions: 960501
Number of successful extensions: 2392
Number of sequences better than 100.0: 18
Number of HSP's better than 100.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 11
Number of HSP's that attempted gapping in prelim test: 2367
Number of HSP's gapped (non-prelim): 27
length of query: 814
length of database: 14,973,337
effective HSP length: 107
effective length of query: 707
effective length of database: 8,277,491
effective search space: 5852186137
effective search space used: 5852186137
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 56 (26.2 bits)