Query 035579
Match_columns 814
No_of_seqs 456 out of 4089
Neff 10.3
Searched_HMMs 46136
Date Fri Mar 29 04:14:12 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/035579.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/035579hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN00113 leucine-rich repeat r 100.0 2.5E-38 5.4E-43 383.7 28.4 531 117-754 68-606 (968)
2 PLN00113 leucine-rich repeat r 100.0 1.3E-37 2.8E-42 377.5 27.1 507 143-754 69-583 (968)
3 KOG4194 Membrane glycoprotein 99.9 4.1E-27 8.9E-32 240.3 5.3 360 365-750 78-447 (873)
4 KOG0618 Serine/threonine phosp 99.9 1E-27 2.2E-32 258.1 -8.2 501 9-672 2-509 (1081)
5 KOG0618 Serine/threonine phosp 99.9 3E-27 6.4E-32 254.5 -6.1 394 302-781 109-510 (1081)
6 KOG4194 Membrane glycoprotein 99.9 6.6E-26 1.4E-30 231.6 2.2 358 310-727 81-447 (873)
7 PLN03210 Resistant to P. syrin 99.9 1.9E-23 4.1E-28 253.2 23.8 312 365-737 589-911 (1153)
8 KOG0472 Leucine-rich repeat pr 99.9 8.5E-28 1.8E-32 234.8 -13.4 481 114-737 41-544 (565)
9 KOG0444 Cytoskeletal regulator 99.9 3.5E-26 7.5E-31 234.9 -3.8 363 308-756 8-376 (1255)
10 KOG0472 Leucine-rich repeat pr 99.9 1.9E-27 4.1E-32 232.4 -15.6 469 112-709 62-541 (565)
11 PLN03210 Resistant to P. syrin 99.9 1.8E-22 3.9E-27 244.7 21.5 307 331-673 588-903 (1153)
12 KOG0444 Cytoskeletal regulator 99.9 1.4E-24 3E-29 223.2 -6.3 355 293-712 17-379 (1255)
13 PRK15387 E3 ubiquitin-protein 99.6 2.7E-15 5.9E-20 168.6 15.2 256 365-730 201-456 (788)
14 PRK15387 E3 ubiquitin-protein 99.6 1.5E-14 3.2E-19 162.7 16.2 254 389-753 201-456 (788)
15 KOG4237 Extracellular matrix p 99.5 4.6E-16 9.9E-21 153.1 -3.1 119 295-423 79-199 (498)
16 PRK15370 E3 ubiquitin-protein 99.5 9.2E-14 2E-18 157.6 11.1 73 519-600 263-335 (754)
17 PRK15370 E3 ubiquitin-protein 99.4 3.3E-13 7.2E-18 153.1 11.1 179 412-646 178-357 (754)
18 KOG4237 Extracellular matrix p 99.4 3.3E-15 7.1E-20 147.2 -4.9 281 400-753 56-357 (498)
19 KOG0617 Ras suppressor protein 99.4 5.5E-15 1.2E-19 128.5 -4.5 162 538-737 29-190 (264)
20 KOG0617 Ras suppressor protein 99.3 5.2E-14 1.1E-18 122.5 -5.9 161 517-717 32-194 (264)
21 cd00116 LRR_RI Leucine-rich re 99.2 4.8E-12 1E-16 133.8 3.0 17 326-342 17-33 (319)
22 cd00116 LRR_RI Leucine-rich re 99.1 4.8E-12 1E-16 133.7 -0.7 155 519-673 52-231 (319)
23 KOG4658 Apoptotic ATPase [Sign 99.0 2.1E-10 4.6E-15 132.6 3.9 216 2-243 568-788 (889)
24 KOG4341 F-box protein containi 98.9 2.1E-10 4.6E-15 114.7 -2.0 277 303-621 163-459 (483)
25 KOG4341 F-box protein containi 98.8 1.5E-10 3.3E-15 115.8 -4.8 90 143-239 138-230 (483)
26 KOG4658 Apoptotic ATPase [Sign 98.7 4.6E-09 1E-13 121.7 3.5 226 518-759 545-787 (889)
27 PF14580 LRR_9: Leucine-rich r 98.7 1.1E-08 2.5E-13 94.3 3.5 126 114-254 15-147 (175)
28 PF14580 LRR_9: Leucine-rich r 98.6 1.3E-08 2.8E-13 94.0 2.6 127 540-672 17-149 (175)
29 KOG3207 Beta-tubulin folding c 98.6 5.8E-09 1.2E-13 105.3 -0.7 186 537-728 141-335 (505)
30 KOG0532 Leucine-rich repeat (L 98.6 2.3E-09 5E-14 111.4 -4.4 190 520-752 77-270 (722)
31 PRK15386 type III secretion pr 98.5 9.8E-07 2.1E-11 91.6 12.9 165 538-757 48-215 (426)
32 KOG3207 Beta-tubulin folding c 98.5 1.1E-08 2.3E-13 103.4 -1.5 167 50-236 142-312 (505)
33 KOG1259 Nischarin, modulator o 98.5 1.8E-08 3.8E-13 96.5 -0.5 40 535-575 207-246 (490)
34 COG4886 Leucine-rich repeat (L 98.5 1.6E-07 3.4E-12 102.3 5.3 178 538-735 112-292 (394)
35 KOG1259 Nischarin, modulator o 98.4 7.5E-08 1.6E-12 92.3 2.3 110 565-682 306-416 (490)
36 COG4886 Leucine-rich repeat (L 98.4 2.5E-07 5.3E-12 100.7 4.9 189 546-753 97-288 (394)
37 PRK15386 type III secretion pr 98.3 3.6E-06 7.9E-11 87.4 10.5 73 329-421 49-121 (426)
38 KOG0532 Leucine-rich repeat (L 98.3 2.7E-08 5.9E-13 103.7 -5.8 170 565-753 74-245 (722)
39 KOG2120 SCF ubiquitin ligase, 98.2 4.3E-08 9.4E-13 93.9 -5.1 152 519-673 186-348 (419)
40 KOG2120 SCF ubiquitin ligase, 98.2 1.1E-07 2.4E-12 91.2 -3.1 33 309-341 187-219 (419)
41 KOG1909 Ran GTPase-activating 98.1 4.5E-07 9.7E-12 89.4 -0.5 189 536-732 86-310 (382)
42 PLN03150 hypothetical protein; 98.1 3.2E-06 7E-11 96.3 6.2 93 519-611 419-511 (623)
43 PF13855 LRR_8: Leucine rich r 98.1 3.2E-06 7E-11 63.7 4.0 57 543-600 2-59 (61)
44 PF13855 LRR_8: Leucine rich r 98.1 7.3E-06 1.6E-10 61.8 5.3 58 519-576 2-59 (61)
45 KOG1909 Ran GTPase-activating 98.1 4.2E-07 9.1E-12 89.6 -2.2 85 516-601 28-131 (382)
46 KOG0531 Protein phosphatase 1, 97.9 1.7E-06 3.7E-11 94.1 -0.7 124 518-647 95-220 (414)
47 PLN03150 hypothetical protein; 97.9 1.7E-05 3.6E-10 90.6 6.5 112 496-607 420-532 (623)
48 KOG0531 Protein phosphatase 1, 97.9 2.3E-06 5E-11 93.2 -0.6 167 494-673 95-265 (414)
49 KOG1859 Leucine-rich repeat pr 97.8 7.9E-07 1.7E-11 95.6 -6.0 195 538-754 80-291 (1096)
50 KOG2982 Uncharacterized conser 97.7 3.9E-05 8.5E-10 74.1 4.0 88 361-449 67-157 (418)
51 KOG1859 Leucine-rich repeat pr 97.6 1.4E-06 3E-11 93.7 -6.6 122 520-648 166-292 (1096)
52 PF12799 LRR_4: Leucine Rich r 97.4 0.00017 3.7E-09 49.6 3.7 41 695-737 1-41 (44)
53 KOG1644 U2-associated snRNP A' 97.4 0.0003 6.4E-09 64.5 6.2 104 634-753 41-151 (233)
54 PF12799 LRR_4: Leucine Rich r 97.4 0.00018 4E-09 49.4 3.1 37 5-45 1-37 (44)
55 KOG2982 Uncharacterized conser 97.1 0.00045 9.8E-09 67.0 4.4 185 541-735 70-265 (418)
56 KOG1947 Leucine rich repeat pr 97.1 2.6E-05 5.7E-10 87.7 -5.2 193 538-758 239-443 (482)
57 KOG3665 ZYG-1-like serine/thre 97.0 8.5E-05 1.8E-09 84.5 -2.5 110 117-236 147-261 (699)
58 KOG1947 Leucine rich repeat pr 96.9 0.00019 4.2E-09 80.6 -0.6 119 328-453 184-310 (482)
59 KOG3665 ZYG-1-like serine/thre 96.9 0.00058 1.3E-08 77.8 3.1 132 308-449 123-261 (699)
60 KOG1644 U2-associated snRNP A' 96.8 0.0014 3E-08 60.3 4.2 92 110-205 56-149 (233)
61 KOG4579 Leucine-rich repeat (L 96.7 0.00013 2.9E-09 62.2 -2.8 90 636-737 28-117 (177)
62 KOG4579 Leucine-rich repeat (L 96.6 0.00014 3.1E-09 62.0 -3.4 108 520-629 29-139 (177)
63 PF00560 LRR_1: Leucine Rich R 96.5 0.0011 2.4E-08 37.7 1.1 22 6-28 1-22 (22)
64 COG5238 RNA1 Ran GTPase-activa 96.0 0.0052 1.1E-07 59.1 2.9 137 535-673 85-252 (388)
65 COG5238 RNA1 Ran GTPase-activa 95.8 0.0021 4.6E-08 61.7 -0.2 84 517-600 29-130 (388)
66 KOG2123 Uncharacterized conser 95.7 0.00062 1.3E-08 65.5 -4.2 98 519-621 20-124 (388)
67 KOG2123 Uncharacterized conser 95.1 0.00075 1.6E-08 64.9 -6.0 34 634-673 40-73 (388)
68 PF13306 LRR_5: Leucine rich r 94.8 0.16 3.4E-06 45.0 8.6 37 561-599 7-44 (129)
69 KOG2739 Leucine-rich acidic nu 94.6 0.013 2.9E-07 56.5 1.1 39 633-672 114-152 (260)
70 PF13306 LRR_5: Leucine rich r 94.6 0.16 3.5E-06 44.9 8.0 82 537-623 7-90 (129)
71 PF13504 LRR_7: Leucine rich r 94.4 0.022 4.8E-07 29.9 1.1 17 5-22 1-17 (17)
72 KOG2739 Leucine-rich acidic nu 94.1 0.024 5.2E-07 54.7 1.5 59 365-423 65-127 (260)
73 KOG3864 Uncharacterized conser 92.3 0.029 6.2E-07 52.0 -0.8 86 636-731 102-188 (221)
74 PF13504 LRR_7: Leucine rich r 91.6 0.15 3.2E-06 26.8 1.7 16 720-736 2-17 (17)
75 PF00560 LRR_1: Leucine Rich R 90.7 0.12 2.6E-06 29.3 0.9 20 366-386 1-20 (22)
76 smart00370 LRR Leucine-rich re 90.1 0.18 4E-06 29.9 1.4 21 4-25 1-21 (26)
77 smart00369 LRR_TYP Leucine-ric 90.1 0.18 4E-06 29.9 1.4 21 4-25 1-21 (26)
78 KOG3864 Uncharacterized conser 89.4 0.06 1.3E-06 49.9 -1.6 81 366-447 102-185 (221)
79 smart00367 LRR_CC Leucine-rich 78.9 1.3 2.7E-05 26.3 1.3 15 719-733 2-16 (26)
80 smart00365 LRR_SD22 Leucine-ri 70.7 3 6.5E-05 24.8 1.4 17 4-21 1-17 (26)
81 smart00364 LRR_BAC Leucine-ric 66.1 3.8 8.2E-05 24.3 1.2 17 695-712 2-18 (26)
82 PF13516 LRR_6: Leucine Rich r 57.8 4.9 0.00011 23.1 0.7 16 4-20 1-16 (24)
83 KOG3763 mRNA export factor TAP 54.5 8 0.00017 42.1 2.1 70 329-405 215-286 (585)
84 smart00368 LRR_RI Leucine rich 46.9 12 0.00027 22.5 1.3 15 5-20 2-16 (28)
85 KOG0473 Leucine-rich repeat pr 36.3 1.1 2.5E-05 42.6 -6.5 84 632-730 39-122 (326)
86 PF05725 FNIP: FNIP Repeat; I 33.4 78 0.0017 21.5 3.7 32 719-751 12-43 (44)
87 KOG0473 Leucine-rich repeat pr 32.1 1.7 3.7E-05 41.5 -6.2 83 538-623 38-120 (326)
88 KOG4308 LRR-containing protein 28.1 0.47 1E-05 52.1 -12.4 83 520-602 89-184 (478)
89 KOG3763 mRNA export factor TAP 26.8 37 0.0008 37.3 1.7 83 635-725 218-307 (585)
No 1
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=100.00 E-value=2.5e-38 Score=383.66 Aligned_cols=531 Identities=17% Similarity=0.152 Sum_probs=341.2
Q ss_pred CcCcccEEEeeeCCC-CCCccccCCCCCcccEEEEecCCCCCCCCC--CCCCCccceeeecCCcCceeeCccccCCCCCC
Q 035579 117 HKNLEQFGICGYGGT-KFPTWLGDCSFSNLVTLKFKDCGVCTTLPS--VGQLSSLKHLTVRGMSRVKSLGSEFYGNDSPI 193 (814)
Q Consensus 117 ~~~L~~L~l~~~~~~-~~p~~~~~~~l~~L~~L~L~~~~~~~~l~~--l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~ 193 (814)
..+++.|+++++.+. .+|..+. .+++|++|+|++|.+...+|. +..+++|++|++++|+....++. .
T Consensus 68 ~~~v~~L~L~~~~i~~~~~~~~~--~l~~L~~L~Ls~n~~~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~p~--------~ 137 (968)
T PLN00113 68 SSRVVSIDLSGKNISGKISSAIF--RLPYIQTINLSNNQLSGPIPDDIFTTSSSLRYLNLSNNNFTGSIPR--------G 137 (968)
T ss_pred CCcEEEEEecCCCccccCChHHh--CCCCCCEEECCCCccCCcCChHHhccCCCCCEEECcCCccccccCc--------c
Confidence 357889999988644 3455554 689999999999987767774 55899999999998754333332 1
Q ss_pred CCCCcceeeccccccccccccCCCCCCcccCCcccEEEEccCCCcccCCCCCCCcccceeeccccceeEEcCCCceeeec
Q 035579 194 PFPCLETLRFENMQEWEDWIPLRSDQGVEGFPKLRELHIISCSKLQGTFPEHLPALEMLVIEGSLCKFEIGGCKKVVWRS 273 (814)
Q Consensus 194 ~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~lp~~l~~L~~L~l~~~l~~l~l~~c~~~~~~~ 273 (814)
.+++|++|+++++ .+....+.. ++.+++|++|++++|. +.+.+|..+.+++.|+. |++++|.
T Consensus 138 ~l~~L~~L~Ls~n-~~~~~~p~~----~~~l~~L~~L~L~~n~-l~~~~p~~~~~l~~L~~------L~L~~n~------ 199 (968)
T PLN00113 138 SIPNLETLDLSNN-MLSGEIPND----IGSFSSLKVLDLGGNV-LVGKIPNSLTNLTSLEF------LTLASNQ------ 199 (968)
T ss_pred ccCCCCEEECcCC-cccccCChH----HhcCCCCCEEECccCc-ccccCChhhhhCcCCCe------eeccCCC------
Confidence 2788999999884 444333222 5688999999999987 66577764444333322 3334442
Q ss_pred ccccCCCCCceeeccCCccccccCCCCCCCCCcceEEEcCCCCcchhccchhhhhhcCCCCCeEEEecCCCcccchhhHH
Q 035579 274 ATDHLGSQNSVVCRDTSNQVFLAGPLKPRLPKLEELKINDMKEQTYMWKSHNELLQDICSLRRLTIRSCPKLQSLVAEEE 353 (814)
Q Consensus 274 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~~~~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~l~~~~~ 353 (814)
+.+.+|..+.+++.|+.++++++.... ..+..+..+++|++|++++|.....++..
T Consensus 200 ---------------------l~~~~p~~l~~l~~L~~L~L~~n~l~~-~~p~~l~~l~~L~~L~L~~n~l~~~~p~~-- 255 (968)
T PLN00113 200 ---------------------LVGQIPRELGQMKSLKWIYLGYNNLSG-EIPYEIGGLTSLNHLDLVYNNLTGPIPSS-- 255 (968)
T ss_pred ---------------------CcCcCChHHcCcCCccEEECcCCccCC-cCChhHhcCCCCCEEECcCceeccccChh--
Confidence 344556677777888888877776633 33444577788888888876433333322
Q ss_pred HHHHHHhhhccccccEEEeeccCCccccccccCCCCCcceEeeecCCCCcccCC-CCCCCCCcEEEecccCCCCCCchhh
Q 035579 354 KDQQQQLCELSCRLEYLILSCCEGLVKLPQSSLSLCSLREIGIYKCSSLVSFPE-VALPSKLEKIHIGACDALKSLPEAW 432 (814)
Q Consensus 354 ~~~~~~l~~~~~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~L~~~~~l~~~~~-~~~~~~L~~L~l~~~~~l~~~~~~~ 432 (814)
+..+ ++|++|++++|.+.+.+|..+..+++|++|++++|.....+|. +..+++|+.|++++|...+..|..+
T Consensus 256 ---l~~l----~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~~ 328 (968)
T PLN00113 256 ---LGNL----KNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLSGEIPELVIQLQNLEILHLFSNNFTGKIPVAL 328 (968)
T ss_pred ---HhCC----CCCCEEECcCCeeeccCchhHhhccCcCEEECcCCeeccCCChhHcCCCCCcEEECCCCccCCcCChhH
Confidence 4444 7788888888877777777777788888888877655445553 4557778888888877555666655
Q ss_pred hcCCCCCccEEEEecCCCCcccccc-cCcCccceeeeccccCCcccccccCCCCCCCCCCCCCCccEEeecCCCCccccc
Q 035579 433 MCDTNSSLEILYIEGCRSLTYIAAV-QLPSSLKNLQIHGCYNIKTLTVEEGIPSSSSSRYTSSILEHLSIVGCPSLTCIF 511 (814)
Q Consensus 433 ~~~~l~~L~~L~l~~~~~l~~~~~~-~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~ 511 (814)
..+++|+.|++++|.....+|.. ...++|+.|+++++ .....+.
T Consensus 329 --~~l~~L~~L~L~~n~l~~~~p~~l~~~~~L~~L~Ls~n---------------------------------~l~~~~p 373 (968)
T PLN00113 329 --TSLPRLQVLQLWSNKFSGEIPKNLGKHNNLTVLDLSTN---------------------------------NLTGEIP 373 (968)
T ss_pred --hcCCCCCEEECcCCCCcCcCChHHhCCCCCcEEECCCC---------------------------------eeEeeCC
Confidence 67777888888776543333321 22234444544443 3222211
Q ss_pred ccCCCcccccEEEEeccCCcchhhHhhcCCCCcceEeecccCCcccccccCCCCCCccEEEecCCCCceecCCCCCCCCC
Q 035579 512 SKNELPATLESLSVYKCSKLESIAERLDNNTSLETIGINFCENLKILPSGLHNLRQLREITIQRCGNLVSFPEGGLPCAK 591 (814)
Q Consensus 512 ~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~l~~ 591 (814)
......++|+.|++++|.....+|..+..+++|+.|++++|.+.+.+|..+..+++|+.|++++|.....+|..+..+++
T Consensus 374 ~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~ 453 (968)
T PLN00113 374 EGLCSSGNLFKLILFSNSLEGEIPKSLGACRSLRRVRLQDNSFSGELPSEFTKLPLVYFLDISNNNLQGRINSRKWDMPS 453 (968)
T ss_pred hhHhCcCCCCEEECcCCEecccCCHHHhCCCCCCEEECcCCEeeeECChhHhcCCCCCEEECcCCcccCccChhhccCCC
Confidence 11222345666666666666666666777777777777777777666666777777777777776555555555556667
Q ss_pred cceEeeccccccccccccccCCCCcceEEecC-ccCc-ccc-CCCCCceeEEEecCCcchhhhhhhcccccCCCCcccEE
Q 035579 592 LSELRIFQCERLEALPKGLHNLTSLQELTIGG-ALPS-LEE-DGLPTNLHSLDIRGNMEIWKSMIERGRGFHRFSSLRHL 668 (814)
Q Consensus 592 L~~L~l~~~~~l~~lp~~~~~l~~L~~L~l~~-~~~~-l~~-~~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~l~~L~~L 668 (814)
|+.|++++|...+.+|..+ ..++|+.|++++ .+.. ++. ...+++|++|++++|......+ ..+..+++|++|
T Consensus 454 L~~L~L~~n~~~~~~p~~~-~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p----~~~~~l~~L~~L 528 (968)
T PLN00113 454 LQMLSLARNKFFGGLPDSF-GSKRLENLDLSRNQFSGAVPRKLGSLSELMQLKLSENKLSGEIP----DELSSCKKLVSL 528 (968)
T ss_pred CcEEECcCceeeeecCccc-ccccceEEECcCCccCCccChhhhhhhccCEEECcCCcceeeCC----hHHcCccCCCEE
Confidence 7777777776555565543 346677777766 3332 221 3345677777777777665544 456777888888
Q ss_pred EEecCCCCCccCCccccccCCCCCCCCCcceEEeccCCCCcccccccccCCCCCeEEecCCCCCCccCCCCCcCCccEEe
Q 035579 669 TIDGCDDDMVSFPPEDKRLGTALPLPASLTDLEIGRFPNLERLSSSIVDLQNLTELCLRDCPKLKYFPEKGLPSSLLRLS 748 (814)
Q Consensus 669 ~l~~~~~~l~~i~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~l~~L~~L~l~~c~~l~~lp~~~l~~~L~~L~ 748 (814)
++++|. ....+|... ..+++|+.|++++|+....+|..+..+++|++|++++|+-...+|..+...++....
T Consensus 529 ~Ls~N~-l~~~~p~~~-------~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~l~ls~N~l~~~~p~~~~~~~~~~~~ 600 (968)
T PLN00113 529 DLSHNQ-LSGQIPASF-------SEMPVLSQLDLSQNQLSGEIPKNLGNVESLVQVNISHNHLHGSLPSTGAFLAINASA 600 (968)
T ss_pred ECCCCc-ccccCChhH-------hCcccCCEEECCCCcccccCChhHhcCcccCEEeccCCcceeeCCCcchhcccChhh
Confidence 888752 334455544 457788888888855445677777778888888888877666677655444555555
Q ss_pred ecCCch
Q 035579 749 ILSCPL 754 (814)
Q Consensus 749 i~~c~~ 754 (814)
+.++|.
T Consensus 601 ~~~n~~ 606 (968)
T PLN00113 601 VAGNID 606 (968)
T ss_pred hcCCcc
Confidence 555543
No 2
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=100.00 E-value=1.3e-37 Score=377.51 Aligned_cols=507 Identities=18% Similarity=0.165 Sum_probs=357.7
Q ss_pred CcccEEEEecCCCCCCCC-CCCCCCccceeeecCCcCceeeCccccCCCCCCCCCCcceeeccccccccccccCCCCCCc
Q 035579 143 SNLVTLKFKDCGVCTTLP-SVGQLSSLKHLTVRGMSRVKSLGSEFYGNDSPIPFPCLETLRFENMQEWEDWIPLRSDQGV 221 (814)
Q Consensus 143 ~~L~~L~L~~~~~~~~l~-~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~ 221 (814)
..++.|+++++...+.++ .+..+++|+.|++++|.-...++..... .+.+|++|++++ +++.+..+ .
T Consensus 69 ~~v~~L~L~~~~i~~~~~~~~~~l~~L~~L~Ls~n~~~~~ip~~~~~-----~l~~L~~L~Ls~-n~l~~~~p------~ 136 (968)
T PLN00113 69 SRVVSIDLSGKNISGKISSAIFRLPYIQTINLSNNQLSGPIPDDIFT-----TSSSLRYLNLSN-NNFTGSIP------R 136 (968)
T ss_pred CcEEEEEecCCCccccCChHHhCCCCCCEEECCCCccCCcCChHHhc-----cCCCCCEEECcC-CccccccC------c
Confidence 579999999988766665 4889999999999987533344443321 278888888887 34444332 3
Q ss_pred ccCCcccEEEEccCCCcccCCCCCC---CcccceeeccccceeEEcCCCceeeecccccCCCCCceeeccCCccccccCC
Q 035579 222 EGFPKLRELHIISCSKLQGTFPEHL---PALEMLVIEGSLCKFEIGGCKKVVWRSATDHLGSQNSVVCRDTSNQVFLAGP 298 (814)
Q Consensus 222 ~~l~~L~~L~l~~c~~l~~~lp~~l---~~L~~L~l~~~l~~l~l~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 298 (814)
+.+++|++|++++|. +++.+|..+ ++|+.|++ ++|. +.+.
T Consensus 137 ~~l~~L~~L~Ls~n~-~~~~~p~~~~~l~~L~~L~L---------~~n~---------------------------l~~~ 179 (968)
T PLN00113 137 GSIPNLETLDLSNNM-LSGEIPNDIGSFSSLKVLDL---------GGNV---------------------------LVGK 179 (968)
T ss_pred cccCCCCEEECcCCc-ccccCChHHhcCCCCCEEEC---------ccCc---------------------------cccc
Confidence 467888888888887 665666533 44444444 4332 3344
Q ss_pred CCCCCCCcceEEEcCCCCcchhccchhhhhhcCCCCCeEEEecCCCcccchhhHHHHHHHHhhhccccccEEEeeccCCc
Q 035579 299 LKPRLPKLEELKINDMKEQTYMWKSHNELLQDICSLRRLTIRSCPKLQSLVAEEEKDQQQQLCELSCRLEYLILSCCEGL 378 (814)
Q Consensus 299 ~~~~~~~L~~L~~~~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~ 378 (814)
+|..+.++++|+.++++++.... ..+..++.+++|++|++++|.....++.. +..+ ++|++|++++|.+.
T Consensus 180 ~p~~~~~l~~L~~L~L~~n~l~~-~~p~~l~~l~~L~~L~L~~n~l~~~~p~~-----l~~l----~~L~~L~L~~n~l~ 249 (968)
T PLN00113 180 IPNSLTNLTSLEFLTLASNQLVG-QIPRELGQMKSLKWIYLGYNNLSGEIPYE-----IGGL----TSLNHLDLVYNNLT 249 (968)
T ss_pred CChhhhhCcCCCeeeccCCCCcC-cCChHHcCcCCccEEECcCCccCCcCChh-----HhcC----CCCCEEECcCceec
Confidence 55566666666666666665532 23344566667777777665433333322 3333 66777777776666
Q ss_pred cccccccCCCCCcceEeeecCCCCcccC-CCCCCCCCcEEEecccCCCCCCchhhhcCCCCCccEEEEecCCCCcccccc
Q 035579 379 VKLPQSSLSLCSLREIGIYKCSSLVSFP-EVALPSKLEKIHIGACDALKSLPEAWMCDTNSSLEILYIEGCRSLTYIAAV 457 (814)
Q Consensus 379 ~~~~~~~~~l~~L~~L~L~~~~~l~~~~-~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~ 457 (814)
+.+|..+..+++|++|++++|.....+| .+..+++|+.|++++|...+.+|..+ ..+++|+.|++++|.....+
T Consensus 250 ~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~--~~l~~L~~L~l~~n~~~~~~--- 324 (968)
T PLN00113 250 GPIPSSLGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLSGEIPELV--IQLQNLEILHLFSNNFTGKI--- 324 (968)
T ss_pred cccChhHhCCCCCCEEECcCCeeeccCchhHhhccCcCEEECcCCeeccCCChhH--cCCCCCcEEECCCCccCCcC---
Confidence 6666666666677777776654433343 24446666677776666444555544 56666666666665432222
Q ss_pred cCcCccceeeeccccCCcccccccCCCCCCCCCCCCCCccEEeecCCCCcccccccCCCcccccEEEEeccCCcchhhHh
Q 035579 458 QLPSSLKNLQIHGCYNIKTLTVEEGIPSSSSSRYTSSILEHLSIVGCPSLTCIFSKNELPATLESLSVYKCSKLESIAER 537 (814)
Q Consensus 458 ~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~ 537 (814)
|..+. .+++|+.|++++|.....+.......++|+.|++++|.....+|..
T Consensus 325 --------------------------~~~~~---~l~~L~~L~L~~n~l~~~~p~~l~~~~~L~~L~Ls~n~l~~~~p~~ 375 (968)
T PLN00113 325 --------------------------PVALT---SLPRLQVLQLWSNKFSGEIPKNLGKHNNLTVLDLSTNNLTGEIPEG 375 (968)
T ss_pred --------------------------ChhHh---cCCCCCEEECcCCCCcCcCChHHhCCCCCcEEECCCCeeEeeCChh
Confidence 22111 1245666666665544332222334568999999999988889999
Q ss_pred hcCCCCcceEeecccCCcccccccCCCCCCccEEEecCCCCceecCCCCCCCCCcceEeeccccccccccccccCCCCcc
Q 035579 538 LDNNTSLETIGINFCENLKILPSGLHNLRQLREITIQRCGNLVSFPEGGLPCAKLSELRIFQCERLEALPKGLHNLTSLQ 617 (814)
Q Consensus 538 ~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~~~~l~~lp~~~~~l~~L~ 617 (814)
++.+++|+.|++++|.+.+.+|..+..+++|+.|++++|.....+|..+..+++|+.|++++|.....+|..+..+++|+
T Consensus 376 ~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~ 455 (968)
T PLN00113 376 LCSSGNLFKLILFSNSLEGEIPKSLGACRSLRRVRLQDNSFSGELPSEFTKLPLVYFLDISNNNLQGRINSRKWDMPSLQ 455 (968)
T ss_pred HhCcCCCCEEECcCCEecccCCHHHhCCCCCCEEECcCCEeeeECChhHhcCCCCCEEECcCCcccCccChhhccCCCCc
Confidence 99999999999999999999999999999999999999977778888889999999999999987778888888999999
Q ss_pred eEEecC-ccC-ccccCCCCCceeEEEecCCcchhhhhhhcccccCCCCcccEEEEecCCCCCccCCccccccCCCCCCCC
Q 035579 618 ELTIGG-ALP-SLEEDGLPTNLHSLDIRGNMEIWKSMIERGRGFHRFSSLRHLTIDGCDDDMVSFPPEDKRLGTALPLPA 695 (814)
Q Consensus 618 ~L~l~~-~~~-~l~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~l~~i~~~~~~~~~~~~~~~ 695 (814)
.|++++ .+. .++.....++|+.|++++|......+ ..+..+++|+.|++++| .....+|... ..++
T Consensus 456 ~L~L~~n~~~~~~p~~~~~~~L~~L~ls~n~l~~~~~----~~~~~l~~L~~L~Ls~N-~l~~~~p~~~-------~~l~ 523 (968)
T PLN00113 456 MLSLARNKFFGGLPDSFGSKRLENLDLSRNQFSGAVP----RKLGSLSELMQLKLSEN-KLSGEIPDEL-------SSCK 523 (968)
T ss_pred EEECcCceeeeecCcccccccceEEECcCCccCCccC----hhhhhhhccCEEECcCC-cceeeCChHH-------cCcc
Confidence 999998 332 34443445899999999998876654 56889999999999996 2445677766 4689
Q ss_pred CcceEEeccCCCCcccccccccCCCCCeEEecCCCCCCccCCCCC-cCCccEEeecCCch
Q 035579 696 SLTDLEIGRFPNLERLSSSIVDLQNLTELCLRDCPKLKYFPEKGL-PSSLLRLSILSCPL 754 (814)
Q Consensus 696 ~L~~L~l~~~~~l~~l~~~~~~l~~L~~L~l~~c~~l~~lp~~~l-~~~L~~L~i~~c~~ 754 (814)
+|++|++++|.-...+|..+..+++|+.|++++|+....+|.... +++|+.+++++|+.
T Consensus 524 ~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~l~ls~N~l 583 (968)
T PLN00113 524 KLVSLDLSHNQLSGQIPASFSEMPVLSQLDLSQNQLSGEIPKNLGNVESLVQVNISHNHL 583 (968)
T ss_pred CCCEEECCCCcccccCChhHhCcccCCEEECCCCcccccCChhHhcCcccCEEeccCCcc
Confidence 999999999554456787899999999999999866667776322 78999999999974
No 3
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.93 E-value=4.1e-27 Score=240.29 Aligned_cols=360 Identities=17% Similarity=0.160 Sum_probs=236.7
Q ss_pred ccccEEEeeccCCccccccccCCCCCcceEeeecCCCCcccCCCCCC-CCCcEEEecccCCCCCCchhhhcCCCCCccEE
Q 035579 365 CRLEYLILSCCEGLVKLPQSSLSLCSLREIGIYKCSSLVSFPEVALP-SKLEKIHIGACDALKSLPEAWMCDTNSSLEIL 443 (814)
Q Consensus 365 ~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~L~~~~~l~~~~~~~~~-~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L 443 (814)
+.-+.|++++|.+...-+..|.++++|+++++.. +.++.+|.++.. .+|+.|++.+|. +..+...-. ..++.|+.|
T Consensus 78 ~~t~~LdlsnNkl~~id~~~f~nl~nLq~v~l~~-N~Lt~IP~f~~~sghl~~L~L~~N~-I~sv~se~L-~~l~alrsl 154 (873)
T KOG4194|consen 78 SQTQTLDLSNNKLSHIDFEFFYNLPNLQEVNLNK-NELTRIPRFGHESGHLEKLDLRHNL-ISSVTSEEL-SALPALRSL 154 (873)
T ss_pred cceeeeeccccccccCcHHHHhcCCcceeeeecc-chhhhcccccccccceeEEeeeccc-cccccHHHH-HhHhhhhhh
Confidence 4455566666655444455556666666666655 355556655443 336666666665 333333222 455666666
Q ss_pred EEecCCCCcccccccCc--CccceeeeccccCCcccccccCCCCCCCCCCCCCCccEEeecCCCCccccccc-CCCcccc
Q 035579 444 YIEGCRSLTYIAAVQLP--SSLKNLQIHGCYNIKTLTVEEGIPSSSSSRYTSSILEHLSIVGCPSLTCIFSK-NELPATL 520 (814)
Q Consensus 444 ~l~~~~~l~~~~~~~~~--~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~-~~~~~~L 520 (814)
|++. +.+.+++...+| .++++|++++.. ++ .+.. ..+..+++|..|.++++...+- ... ...+++|
T Consensus 155 DLSr-N~is~i~~~sfp~~~ni~~L~La~N~-It------~l~~--~~F~~lnsL~tlkLsrNrittL-p~r~Fk~L~~L 223 (873)
T KOG4194|consen 155 DLSR-NLISEIPKPSFPAKVNIKKLNLASNR-IT------TLET--GHFDSLNSLLTLKLSRNRITTL-PQRSFKRLPKL 223 (873)
T ss_pred hhhh-chhhcccCCCCCCCCCceEEeecccc-cc------cccc--ccccccchheeeecccCccccc-CHHHhhhcchh
Confidence 6666 345555554444 345566555542 11 1111 1111224566666665432221 111 2235678
Q ss_pred cEEEEeccCCcchhhHhhcCCCCcceEeecccCCcccccccCCCCCCccEEEecCCCCceecCC-CCCCCCCcceEeecc
Q 035579 521 ESLSVYKCSKLESIAERLDNNTSLETIGINFCENLKILPSGLHNLRQLREITIQRCGNLVSFPE-GGLPCAKLSELRIFQ 599 (814)
Q Consensus 521 ~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~-~~~~l~~L~~L~l~~ 599 (814)
+.|++..|..-..-.-.|.++++|+.|.|..|.+...-...|..+.++++|+++.| .+..+.. ...++++|+.|++++
T Consensus 224 ~~LdLnrN~irive~ltFqgL~Sl~nlklqrN~I~kL~DG~Fy~l~kme~l~L~~N-~l~~vn~g~lfgLt~L~~L~lS~ 302 (873)
T KOG4194|consen 224 ESLDLNRNRIRIVEGLTFQGLPSLQNLKLQRNDISKLDDGAFYGLEKMEHLNLETN-RLQAVNEGWLFGLTSLEQLDLSY 302 (873)
T ss_pred hhhhccccceeeehhhhhcCchhhhhhhhhhcCcccccCcceeeecccceeecccc-hhhhhhcccccccchhhhhccch
Confidence 88888886544333446888888888888888888766677888889999999887 5666655 456788899999998
Q ss_pred ccccccccccccCCCCcceEEecC-ccCccccCC--CCCceeEEEecCCcchhhhhhhcccccCCCCcccEEEEecCCCC
Q 035579 600 CERLEALPKGLHNLTSLQELTIGG-ALPSLEEDG--LPTNLHSLDIRGNMEIWKSMIERGRGFHRFSSLRHLTIDGCDDD 676 (814)
Q Consensus 600 ~~~l~~lp~~~~~l~~L~~L~l~~-~~~~l~~~~--~~~~L~~L~l~~n~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~ 676 (814)
|...+.-+++...+++|++|+++. .+..+++.. .+..|++|.++.|.+....- ..|..+.+|++||+++| .
T Consensus 303 NaI~rih~d~WsftqkL~~LdLs~N~i~~l~~~sf~~L~~Le~LnLs~Nsi~~l~e----~af~~lssL~~LdLr~N--~ 376 (873)
T KOG4194|consen 303 NAIQRIHIDSWSFTQKLKELDLSSNRITRLDEGSFRVLSQLEELNLSHNSIDHLAE----GAFVGLSSLHKLDLRSN--E 376 (873)
T ss_pred hhhheeecchhhhcccceeEeccccccccCChhHHHHHHHhhhhcccccchHHHHh----hHHHHhhhhhhhcCcCC--e
Confidence 865555567778888999999988 888887643 36889999999998766544 67888999999999986 3
Q ss_pred CccCCccccccCCCCCCCCCcceEEeccCCCCccccc-ccccCCCCCeEEecCCCCCCccCCCCC-cCCccEEeec
Q 035579 677 MVSFPPEDKRLGTALPLPASLTDLEIGRFPNLERLSS-SIVDLQNLTELCLRDCPKLKYFPEKGL-PSSLLRLSIL 750 (814)
Q Consensus 677 l~~i~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~-~~~~l~~L~~L~l~~c~~l~~lp~~~l-~~~L~~L~i~ 750 (814)
+...-+ +...++..+++|+.|++.+ |+++.||. .+..+++|++|++.+ +-+.+|-.+.+ +..|++|.+.
T Consensus 377 ls~~IE---Daa~~f~gl~~LrkL~l~g-Nqlk~I~krAfsgl~~LE~LdL~~-NaiaSIq~nAFe~m~Lk~Lv~n 447 (873)
T KOG4194|consen 377 LSWCIE---DAAVAFNGLPSLRKLRLTG-NQLKSIPKRAFSGLEALEHLDLGD-NAIASIQPNAFEPMELKELVMN 447 (873)
T ss_pred EEEEEe---cchhhhccchhhhheeecC-ceeeecchhhhccCcccceecCCC-Ccceeecccccccchhhhhhhc
Confidence 322211 1234556789999999999 89999998 888999999999988 56888877666 5577777664
No 4
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.92 E-value=1e-27 Score=258.06 Aligned_cols=501 Identities=19% Similarity=0.224 Sum_probs=329.0
Q ss_pred eeecCCCCccccccccCCCCCCCCccCceEEcCCCCCCccccccccCCCceEEEccccCCCChhhhHHhhcccCCCccee
Q 035579 9 HLNNSNTDSLEEMPLGIGKLTCLQTLSNFVVGKDSGSRLPELKLLTYLRGTLHISKLENVTDIGDAKEAQLDVKENLREL 88 (814)
Q Consensus 9 ~L~l~~~~~~~~lp~~i~~L~~L~~L~~~~~~~~~~~~~~~l~~l~~L~~~L~l~~~~~~~~~~~~~~~~l~~l~~L~~L 88 (814)
.+|.+.+. ++.||..|-.=..+..|+...-.-. ....+-..+..+|+ +|++++.. ...++..+..+.+|+.|
T Consensus 2 ~vd~s~~~-l~~ip~~i~~~~~~~~ln~~~N~~l-~~pl~~~~~~v~L~-~l~lsnn~-----~~~fp~~it~l~~L~~l 73 (1081)
T KOG0618|consen 2 HVDASDEQ-LELIPEQILNNEALQILNLRRNSLL-SRPLEFVEKRVKLK-SLDLSNNQ-----ISSFPIQITLLSHLRQL 73 (1081)
T ss_pred Cccccccc-CcccchhhccHHHHHhhhccccccc-cCchHHhhheeeeE-Eeeccccc-----cccCCchhhhHHHHhhc
Confidence 47889998 9999988766666777733211111 11133344444466 66666532 33445556777788888
Q ss_pred EEEEecCCCCCCCcchhhHHhhhcCCCCCcCcccEEEeeeCCCCCCccccCCCCCcccEEEEecCCCCCCCCCCCCCCcc
Q 035579 89 LLQWTRSTDGSSSWKAETEMGVLDMLKPHKNLEQFGICGYGGTKFPTWLGDCSFSNLVTLKFKDCGVCTTLPSVGQLSSL 168 (814)
Q Consensus 89 ~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~p~~~~~~~l~~L~~L~L~~~~~~~~l~~l~~l~~L 168 (814)
.++.|.+. .++.+..+.++|+.|.|.++....+|..+. .+++|+.|++++|.+....+.+..+..+
T Consensus 74 n~s~n~i~------------~vp~s~~~~~~l~~lnL~~n~l~~lP~~~~--~lknl~~LdlS~N~f~~~Pl~i~~lt~~ 139 (1081)
T KOG0618|consen 74 NLSRNYIR------------SVPSSCSNMRNLQYLNLKNNRLQSLPASIS--ELKNLQYLDLSFNHFGPIPLVIEVLTAE 139 (1081)
T ss_pred ccchhhHh------------hCchhhhhhhcchhheeccchhhcCchhHH--hhhcccccccchhccCCCchhHHhhhHH
Confidence 88766554 345666778888888888888888887776 6888888888888876666678888888
Q ss_pred ceeeecCCcCceeeCccccCCCCCCCCCCcceeeccccccccccccCCCCCCcccCCcccEEEEccCCCcccCCCCCCCc
Q 035579 169 KHLTVRGMSRVKSLGSEFYGNDSPIPFPCLETLRFENMQEWEDWIPLRSDQGVEGFPKLRELHIISCSKLQGTFPEHLPA 248 (814)
Q Consensus 169 ~~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~lp~~l~~ 248 (814)
+.+..++|-.+...+.. . .+.+++.. +.+...... ++..+.+ .|++.+|. +. .
T Consensus 140 ~~~~~s~N~~~~~lg~~---------~--ik~~~l~~-n~l~~~~~~----~i~~l~~--~ldLr~N~-~~-~------- 192 (1081)
T KOG0618|consen 140 EELAASNNEKIQRLGQT---------S--IKKLDLRL-NVLGGSFLI----DIYNLTH--QLDLRYNE-ME-V------- 192 (1081)
T ss_pred HHHhhhcchhhhhhccc---------c--chhhhhhh-hhcccchhc----chhhhhe--eeecccch-hh-h-------
Confidence 88888876332222211 1 33333322 111111110 1222333 36666665 32 1
Q ss_pred ccceeeccccceeEEcCCCceeeecccccCCCCCceeeccCCccccccCCCCCCCCCcceEEEcCCCCcchhccchhhhh
Q 035579 249 LEMLVIEGSLCKFEIGGCKKVVWRSATDHLGSQNSVVCRDTSNQVFLAGPLKPRLPKLEELKINDMKEQTYMWKSHNELL 328 (814)
Q Consensus 249 L~~L~l~~~l~~l~l~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~~~~l~~~~~~~~~~~~~~ 328 (814)
++ +.++..|+.+.|..|... .+-
T Consensus 193 ------------~d----------------------------------------ls~~~~l~~l~c~rn~ls-----~l~ 215 (1081)
T KOG0618|consen 193 ------------LD----------------------------------------LSNLANLEVLHCERNQLS-----ELE 215 (1081)
T ss_pred ------------hh----------------------------------------hhhccchhhhhhhhcccc-----eEE
Confidence 11 122222223333333221 011
Q ss_pred hcCCCCCeEEEecCCCcccchhhHHHHHHHHhhhccccccEEEeeccCCccccccccCCCCCcceEeeecCCCCcccC-C
Q 035579 329 QDICSLRRLTIRSCPKLQSLVAEEEKDQQQQLCELSCRLEYLILSCCEGLVKLPQSSLSLCSLREIGIYKCSSLVSFP-E 407 (814)
Q Consensus 329 ~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~L~~~~~l~~~~-~ 407 (814)
..-++|+.|+.+.|+..+.... ..|.+|++++++.+.+ ..+|+++..+.+|+.+...+| .++.+| .
T Consensus 216 ~~g~~l~~L~a~~n~l~~~~~~-----------p~p~nl~~~dis~n~l-~~lp~wi~~~~nle~l~~n~N-~l~~lp~r 282 (1081)
T KOG0618|consen 216 ISGPSLTALYADHNPLTTLDVH-----------PVPLNLQYLDISHNNL-SNLPEWIGACANLEALNANHN-RLVALPLR 282 (1081)
T ss_pred ecCcchheeeeccCcceeeccc-----------cccccceeeecchhhh-hcchHHHHhcccceEecccch-hHHhhHHH
Confidence 2456778888888754422211 1347899999999986 667799999999999999985 456666 4
Q ss_pred CCCCCCCcEEEecccCCCCCCchhhhcCCCCCccEEEEecCCCCcccccccCc---CccceeeeccccCCcccccccCCC
Q 035579 408 VALPSKLEKIHIGACDALKSLPEAWMCDTNSSLEILYIEGCRSLTYIAAVQLP---SSLKNLQIHGCYNIKTLTVEEGIP 484 (814)
Q Consensus 408 ~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~---~~L~~L~l~~~~~l~~~~~~~~~~ 484 (814)
+....+|+.|.+..|. ++.+|... ..+.+|++|++..| .+..+|...+. .+++.+..+.. .+. ..|
T Consensus 283 i~~~~~L~~l~~~~ne-l~yip~~l--e~~~sL~tLdL~~N-~L~~lp~~~l~v~~~~l~~ln~s~n-~l~------~lp 351 (1081)
T KOG0618|consen 283 ISRITSLVSLSAAYNE-LEYIPPFL--EGLKSLRTLDLQSN-NLPSLPDNFLAVLNASLNTLNVSSN-KLS------TLP 351 (1081)
T ss_pred HhhhhhHHHHHhhhhh-hhhCCCcc--cccceeeeeeehhc-cccccchHHHhhhhHHHHHHhhhhc-ccc------ccc
Confidence 6668899999999998 88888876 77999999999985 46666553221 11222222211 111 111
Q ss_pred CCCCCCCCCCCccEEeecCCCCcccccccCCCcccccEEEEeccCCcchhhHhhcCCCCcceEeecccCCcccccccCCC
Q 035579 485 SSSSSRYTSSILEHLSIVGCPSLTCIFSKNELPATLESLSVYKCSKLESIAERLDNNTSLETIGINFCENLKILPSGLHN 564 (814)
Q Consensus 485 ~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~ 564 (814)
.......+.|+.|.+.+|...+...+.+.++++|+.|+|++|.+.......+.+
T Consensus 352 --------------------------~~~e~~~~~Lq~LylanN~Ltd~c~p~l~~~~hLKVLhLsyNrL~~fpas~~~k 405 (1081)
T KOG0618|consen 352 --------------------------SYEENNHAALQELYLANNHLTDSCFPVLVNFKHLKVLHLSYNRLNSFPASKLRK 405 (1081)
T ss_pred --------------------------cccchhhHHHHHHHHhcCcccccchhhhccccceeeeeecccccccCCHHHHhc
Confidence 001223346999999999888888888999999999999999888766677889
Q ss_pred CCCccEEEecCCCCceecCCCCCCCCCcceEeeccccccccccccccCCCCcceEEecC-ccCcc--ccCCCCCceeEEE
Q 035579 565 LRQLREITIQRCGNLVSFPEGGLPCAKLSELRIFQCERLEALPKGLHNLTSLQELTIGG-ALPSL--EEDGLPTNLHSLD 641 (814)
Q Consensus 565 l~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~~~~l~~lp~~~~~l~~L~~L~l~~-~~~~l--~~~~~~~~L~~L~ 641 (814)
++.|++|+++|| .++.+|..+..++.|++|...+| .+..+| .+.+++.|+.+|++. .+..+ +.....++|++|+
T Consensus 406 le~LeeL~LSGN-kL~~Lp~tva~~~~L~tL~ahsN-~l~~fP-e~~~l~qL~~lDlS~N~L~~~~l~~~~p~p~LkyLd 482 (1081)
T KOG0618|consen 406 LEELEELNLSGN-KLTTLPDTVANLGRLHTLRAHSN-QLLSFP-ELAQLPQLKVLDLSCNNLSEVTLPEALPSPNLKYLD 482 (1081)
T ss_pred hHHhHHHhcccc-hhhhhhHHHHhhhhhHHHhhcCC-ceeech-hhhhcCcceEEecccchhhhhhhhhhCCCcccceee
Confidence 999999999998 88999999999999999999998 788888 788999999999998 44433 2222238999999
Q ss_pred ecCCcchhhhhhhcccccCCCCcccEEEEec
Q 035579 642 IRGNMEIWKSMIERGRGFHRFSSLRHLTIDG 672 (814)
Q Consensus 642 l~~n~~~~~~~~~~~~~l~~l~~L~~L~l~~ 672 (814)
+++|....... ..|..+.++...++.-
T Consensus 483 lSGN~~l~~d~----~~l~~l~~l~~~~i~~ 509 (1081)
T KOG0618|consen 483 LSGNTRLVFDH----KTLKVLKSLSQMDITL 509 (1081)
T ss_pred ccCCcccccch----hhhHHhhhhhheeccc
Confidence 99998544333 3455555555555544
No 5
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.92 E-value=3e-27 Score=254.48 Aligned_cols=394 Identities=20% Similarity=0.206 Sum_probs=205.9
Q ss_pred CCCCcceEEEcCCCCcchhccchhhhhhcCCCCCeEEEecCCCcccchhhHHHHHHHHhhhccccccEEEeeccCCcccc
Q 035579 302 RLPKLEELKINDMKEQTYMWKSHNELLQDICSLRRLTIRSCPKLQSLVAEEEKDQQQQLCELSCRLEYLILSCCEGLVKL 381 (814)
Q Consensus 302 ~~~~L~~L~~~~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~ 381 (814)
.+..++.|+.++++.|.+ ...+..+..+..++.+..+++..+..+.. ..++.+++..+.+.+.+
T Consensus 109 ~~~~lknl~~LdlS~N~f--~~~Pl~i~~lt~~~~~~~s~N~~~~~lg~--------------~~ik~~~l~~n~l~~~~ 172 (1081)
T KOG0618|consen 109 SISELKNLQYLDLSFNHF--GPIPLVIEVLTAEEELAASNNEKIQRLGQ--------------TSIKKLDLRLNVLGGSF 172 (1081)
T ss_pred hHHhhhcccccccchhcc--CCCchhHHhhhHHHHHhhhcchhhhhhcc--------------ccchhhhhhhhhcccch
Confidence 344444555555555544 22333444555555556665433333222 33667777777766666
Q ss_pred ccccCCCCCcceEeeecCCCCcccCCCCCCCCCcEEEecccCCCCCCchhhhcCCCCCccEEEEecCCCCcccccccCcC
Q 035579 382 PQSSLSLCSLREIGIYKCSSLVSFPEVALPSKLEKIHIGACDALKSLPEAWMCDTNSSLEILYIEGCRSLTYIAAVQLPS 461 (814)
Q Consensus 382 ~~~~~~l~~L~~L~L~~~~~l~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~ 461 (814)
+..+..+.. .|+|++|... ......+.+|+.++...|+ +..+. ..-++|+.|+.+.|... .......|.
T Consensus 173 ~~~i~~l~~--~ldLr~N~~~--~~dls~~~~l~~l~c~rn~-ls~l~-----~~g~~l~~L~a~~n~l~-~~~~~p~p~ 241 (1081)
T KOG0618|consen 173 LIDIYNLTH--QLDLRYNEME--VLDLSNLANLEVLHCERNQ-LSELE-----ISGPSLTALYADHNPLT-TLDVHPVPL 241 (1081)
T ss_pred hcchhhhhe--eeecccchhh--hhhhhhccchhhhhhhhcc-cceEE-----ecCcchheeeeccCcce-eeccccccc
Confidence 665555554 5777775433 3345556666666666655 33222 12355555555554421 111112223
Q ss_pred ccceeeeccccCCcccccccCCCCCCCCCCCCCCccEEeecCCCCcccccccCCCcccccEEEEeccCCcchhhHhhcCC
Q 035579 462 SLKNLQIHGCYNIKTLTVEEGIPSSSSSRYTSSILEHLSIVGCPSLTCIFSKNELPATLESLSVYKCSKLESIAERLDNN 541 (814)
Q Consensus 462 ~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l 541 (814)
+++.++++.. ++. .+|+|+ .-+.+|+.++..+|.. ..+|..+..+
T Consensus 242 nl~~~dis~n-~l~------~lp~wi---------------------------~~~~nle~l~~n~N~l-~~lp~ri~~~ 286 (1081)
T KOG0618|consen 242 NLQYLDISHN-NLS------NLPEWI---------------------------GACANLEALNANHNRL-VALPLRISRI 286 (1081)
T ss_pred cceeeecchh-hhh------cchHHH---------------------------HhcccceEecccchhH-HhhHHHHhhh
Confidence 3333333222 111 112111 1112344444444322 4444444444
Q ss_pred CCcceEeecccCCcccccccCCCCCCccEEEecCCCCceecCCCCCC-C-CCcceEeeccccccccccc-cccCCCCcce
Q 035579 542 TSLETIGINFCENLKILPSGLHNLRQLREITIQRCGNLVSFPEGGLP-C-AKLSELRIFQCERLEALPK-GLHNLTSLQE 618 (814)
Q Consensus 542 ~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~-l-~~L~~L~l~~~~~l~~lp~-~~~~l~~L~~ 618 (814)
.+|+.|...+|.+... |.....+++|++|++..| .+.++|..+.. . .+|+.|..+.+ ++...|. .=..++.|+.
T Consensus 287 ~~L~~l~~~~nel~yi-p~~le~~~sL~tLdL~~N-~L~~lp~~~l~v~~~~l~~ln~s~n-~l~~lp~~~e~~~~~Lq~ 363 (1081)
T KOG0618|consen 287 TSLVSLSAAYNELEYI-PPFLEGLKSLRTLDLQSN-NLPSLPDNFLAVLNASLNTLNVSSN-KLSTLPSYEENNHAALQE 363 (1081)
T ss_pred hhHHHHHhhhhhhhhC-CCcccccceeeeeeehhc-cccccchHHHhhhhHHHHHHhhhhc-cccccccccchhhHHHHH
Confidence 5555555554444332 223344455555555554 44444442211 1 12444444433 2333331 1123445666
Q ss_pred EEecC---ccCccccCCCCCceeEEEecCCcchhhhhhhcccccCCCCcccEEEEecCCCCCccCCccccccCCCCCCCC
Q 035579 619 LTIGG---ALPSLEEDGLPTNLHSLDIRGNMEIWKSMIERGRGFHRFSSLRHLTIDGCDDDMVSFPPEDKRLGTALPLPA 695 (814)
Q Consensus 619 L~l~~---~~~~l~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~l~~i~~~~~~~~~~~~~~~ 695 (814)
|++.+ +-..+|.......|+.|++++|.+...+. ..+.++..|++|++++| .+..+|... ..++
T Consensus 364 LylanN~Ltd~c~p~l~~~~hLKVLhLsyNrL~~fpa----s~~~kle~LeeL~LSGN--kL~~Lp~tv-------a~~~ 430 (1081)
T KOG0618|consen 364 LYLANNHLTDSCFPVLVNFKHLKVLHLSYNRLNSFPA----SKLRKLEELEELNLSGN--KLTTLPDTV-------ANLG 430 (1081)
T ss_pred HHHhcCcccccchhhhccccceeeeeecccccccCCH----HHHhchHHhHHHhcccc--hhhhhhHHH-------Hhhh
Confidence 66655 34445555556777777777776655443 45667777777777776 777777665 4567
Q ss_pred CcceEEeccCCCCcccccccccCCCCCeEEecCCCCCCccCCC-CCc-CCccEEeecCCchhhHhhccCCCccccccCCc
Q 035579 696 SLTDLEIGRFPNLERLSSSIVDLQNLTELCLRDCPKLKYFPEK-GLP-SSLLRLSILSCPLIEEKCRKDGGQYWDLLTHI 773 (814)
Q Consensus 696 ~L~~L~l~~~~~l~~l~~~~~~l~~L~~L~l~~c~~l~~lp~~-~l~-~~L~~L~i~~c~~l~~~~~~~~~~~~~~~~~i 773 (814)
.|++|...+ |.+..+| .+..++.|+.+|++. ++|+.+... ..| ++|++||++|++.+. -+...+...+++
T Consensus 431 ~L~tL~ahs-N~l~~fP-e~~~l~qL~~lDlS~-N~L~~~~l~~~~p~p~LkyLdlSGN~~l~-----~d~~~l~~l~~l 502 (1081)
T KOG0618|consen 431 RLHTLRAHS-NQLLSFP-ELAQLPQLKVLDLSC-NNLSEVTLPEALPSPNLKYLDLSGNTRLV-----FDHKTLKVLKSL 502 (1081)
T ss_pred hhHHHhhcC-Cceeech-hhhhcCcceEEeccc-chhhhhhhhhhCCCcccceeeccCCcccc-----cchhhhHHhhhh
Confidence 777777777 6777777 778889999999976 678776432 346 899999999998532 122334444555
Q ss_pred cEEEeCCe
Q 035579 774 PFVRIDDK 781 (814)
Q Consensus 774 ~~~~~~~~ 781 (814)
...+++-+
T Consensus 503 ~~~~i~~~ 510 (1081)
T KOG0618|consen 503 SQMDITLN 510 (1081)
T ss_pred hheecccC
Confidence 55555443
No 6
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.91 E-value=6.6e-26 Score=231.55 Aligned_cols=358 Identities=17% Similarity=0.221 Sum_probs=246.3
Q ss_pred EEcCCCCcchhccchhhhhhcCCCCCeEEEecCCCcccchhhHHHHHHHHhhhccccccEEEeeccCCccccccccCCCC
Q 035579 310 KINDMKEQTYMWKSHNELLQDICSLRRLTIRSCPKLQSLVAEEEKDQQQQLCELSCRLEYLILSCCEGLVKLPQSSLSLC 389 (814)
Q Consensus 310 ~~~~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~~~~~~l~ 389 (814)
+.+|+++|.+ ......+|.++++|+++++.+ +.++.+|...- .. .+|+.|+|.+|.+...-.+.+..++
T Consensus 81 ~~LdlsnNkl-~~id~~~f~nl~nLq~v~l~~-N~Lt~IP~f~~-----~s----ghl~~L~L~~N~I~sv~se~L~~l~ 149 (873)
T KOG4194|consen 81 QTLDLSNNKL-SHIDFEFFYNLPNLQEVNLNK-NELTRIPRFGH-----ES----GHLEKLDLRHNLISSVTSEELSALP 149 (873)
T ss_pred eeeecccccc-ccCcHHHHhcCCcceeeeecc-chhhhcccccc-----cc----cceeEEeeeccccccccHHHHHhHh
Confidence 3467777776 335566778999999999988 47887776421 11 5799999999988766666788889
Q ss_pred CcceEeeecCCCCcccCCCCC--CCCCcEEEecccCCCCCCchhhhcCCCCCccEEEEecCCCCcccccccC--cCccce
Q 035579 390 SLREIGIYKCSSLVSFPEVAL--PSKLEKIHIGACDALKSLPEAWMCDTNSSLEILYIEGCRSLTYIAAVQL--PSSLKN 465 (814)
Q Consensus 390 ~L~~L~L~~~~~l~~~~~~~~--~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~--~~~L~~ 465 (814)
.|+.|||+. +.+..++.-.+ -.++++|++++|. ++.+....| ..+.+|..|.++.| .++.+|...| ++.|+.
T Consensus 150 alrslDLSr-N~is~i~~~sfp~~~ni~~L~La~N~-It~l~~~~F-~~lnsL~tlkLsrN-rittLp~r~Fk~L~~L~~ 225 (873)
T KOG4194|consen 150 ALRSLDLSR-NLISEIPKPSFPAKVNIKKLNLASNR-ITTLETGHF-DSLNSLLTLKLSRN-RITTLPQRSFKRLPKLES 225 (873)
T ss_pred hhhhhhhhh-chhhcccCCCCCCCCCceEEeecccc-ccccccccc-cccchheeeecccC-cccccCHHHhhhcchhhh
Confidence 999999998 46677764333 4679999999998 666655554 77889999999884 4666665422 344555
Q ss_pred eeeccccCCcccccccCCCCCCCCCCCCCCccEEeecCCCCcccccccCCCcccccEEEEeccCCcchhhHhhcCCCCcc
Q 035579 466 LQIHGCYNIKTLTVEEGIPSSSSSRYTSSILEHLSIVGCPSLTCIFSKNELPATLESLSVYKCSKLESIAERLDNNTSLE 545 (814)
Q Consensus 466 L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~ 545 (814)
|++.... ++ ... +.....+++|+.|.+..|+...--...|..+.+++
T Consensus 226 LdLnrN~-ir----------------------ive----------~ltFqgL~Sl~nlklqrN~I~kL~DG~Fy~l~kme 272 (873)
T KOG4194|consen 226 LDLNRNR-IR----------------------IVE----------GLTFQGLPSLQNLKLQRNDISKLDDGAFYGLEKME 272 (873)
T ss_pred hhccccc-ee----------------------eeh----------hhhhcCchhhhhhhhhhcCcccccCcceeeecccc
Confidence 5544321 11 000 11112234677777777666655556677788888
Q ss_pred eEeecccCCcccccccCCCCCCccEEEecCCCCceecCCCCCCCCCcceEeeccccccccc-cccccCCCCcceEEecC-
Q 035579 546 TIGINFCENLKILPSGLHNLRQLREITIQRCGNLVSFPEGGLPCAKLSELRIFQCERLEAL-PKGLHNLTSLQELTIGG- 623 (814)
Q Consensus 546 ~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~~~~l~~l-p~~~~~l~~L~~L~l~~- 623 (814)
+|+|..|.+...-..++.++++|+.|++++|..-..-+.++.-+++|+.|++++| .++.+ +..+..+..|++|.++.
T Consensus 273 ~l~L~~N~l~~vn~g~lfgLt~L~~L~lS~NaI~rih~d~WsftqkL~~LdLs~N-~i~~l~~~sf~~L~~Le~LnLs~N 351 (873)
T KOG4194|consen 273 HLNLETNRLQAVNEGWLFGLTSLEQLDLSYNAIQRIHIDSWSFTQKLKELDLSSN-RITRLDEGSFRVLSQLEELNLSHN 351 (873)
T ss_pred eeecccchhhhhhcccccccchhhhhccchhhhheeecchhhhcccceeEecccc-ccccCChhHHHHHHHhhhhccccc
Confidence 8888888877766677778888888888887444444456666778888888877 44444 44667777888888887
Q ss_pred ccCccccC--CCCCceeEEEecCCcchhhhhhhcccccCCCCcccEEEEecCCCCCccCCccccccCCCCCCCCCcceEE
Q 035579 624 ALPSLEED--GLPTNLHSLDIRGNMEIWKSMIERGRGFHRFSSLRHLTIDGCDDDMVSFPPEDKRLGTALPLPASLTDLE 701 (814)
Q Consensus 624 ~~~~l~~~--~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~l~~i~~~~~~~~~~~~~~~~L~~L~ 701 (814)
.+..+.+. ..+++|++|++++|.+...+- +....|.++++|+.|++.+| .+++||...+ ..++.|++|+
T Consensus 352 si~~l~e~af~~lssL~~LdLr~N~ls~~IE-Daa~~f~gl~~LrkL~l~gN--qlk~I~krAf------sgl~~LE~Ld 422 (873)
T KOG4194|consen 352 SIDHLAEGAFVGLSSLHKLDLRSNELSWCIE-DAAVAFNGLPSLRKLRLTGN--QLKSIPKRAF------SGLEALEHLD 422 (873)
T ss_pred chHHHHhhHHHHhhhhhhhcCcCCeEEEEEe-cchhhhccchhhhheeecCc--eeeecchhhh------ccCcccceec
Confidence 66666653 346888888888887655322 11245778888888888887 7888887653 6788888888
Q ss_pred eccCCCCccccc-ccccCCCCCeEEec
Q 035579 702 IGRFPNLERLSS-SIVDLQNLTELCLR 727 (814)
Q Consensus 702 l~~~~~l~~l~~-~~~~l~~L~~L~l~ 727 (814)
|.+ |.+.+|.. .+..+ .|++|.+.
T Consensus 423 L~~-NaiaSIq~nAFe~m-~Lk~Lv~n 447 (873)
T KOG4194|consen 423 LGD-NAIASIQPNAFEPM-ELKELVMN 447 (873)
T ss_pred CCC-Ccceeecccccccc-hhhhhhhc
Confidence 888 77777755 66666 77777553
No 7
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.91 E-value=1.9e-23 Score=253.18 Aligned_cols=312 Identities=21% Similarity=0.274 Sum_probs=175.2
Q ss_pred ccccEEEeeccCCccccccccCCCCCcceEeeecCCCCcccC-CCCCCCCCcEEEecccCCCCCCchhhhcCCCCCccEE
Q 035579 365 CRLEYLILSCCEGLVKLPQSSLSLCSLREIGIYKCSSLVSFP-EVALPSKLEKIHIGACDALKSLPEAWMCDTNSSLEIL 443 (814)
Q Consensus 365 ~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~L~~~~~l~~~~-~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L 443 (814)
.+|+.|++.+++. ..+|..+ ...+|++|++.++ .+..++ ....+++|+.|++++|..++.+|.. ..+++|++|
T Consensus 589 ~~Lr~L~~~~~~l-~~lP~~f-~~~~L~~L~L~~s-~l~~L~~~~~~l~~Lk~L~Ls~~~~l~~ip~l---s~l~~Le~L 662 (1153)
T PLN03210 589 PKLRLLRWDKYPL-RCMPSNF-RPENLVKLQMQGS-KLEKLWDGVHSLTGLRNIDLRGSKNLKEIPDL---SMATNLETL 662 (1153)
T ss_pred cccEEEEecCCCC-CCCCCcC-CccCCcEEECcCc-cccccccccccCCCCCEEECCCCCCcCcCCcc---ccCCcccEE
Confidence 4566666665543 4445444 3455666666553 334443 2334556666666655555555542 445566666
Q ss_pred EEecCCCCcccccc-cCcCccceeeeccccCCcccccccCCCCCCCCCCCCCCccEEeecCCCCcccccccCCCcccccE
Q 035579 444 YIEGCRSLTYIAAV-QLPSSLKNLQIHGCYNIKTLTVEEGIPSSSSSRYTSSILEHLSIVGCPSLTCIFSKNELPATLES 522 (814)
Q Consensus 444 ~l~~~~~l~~~~~~-~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~L~~ 522 (814)
++++|..+..+|.. ..+++|+.|++.+|..++ .+|.. ..+++|+.
T Consensus 663 ~L~~c~~L~~lp~si~~L~~L~~L~L~~c~~L~------~Lp~~----------------------------i~l~sL~~ 708 (1153)
T PLN03210 663 KLSDCSSLVELPSSIQYLNKLEDLDMSRCENLE------ILPTG----------------------------INLKSLYR 708 (1153)
T ss_pred EecCCCCccccchhhhccCCCCEEeCCCCCCcC------ccCCc----------------------------CCCCCCCE
Confidence 66655555544432 333445555555555444 33332 23334445
Q ss_pred EEEeccCCcchhhHhhcCCCCcceEeecccCCcccccccCCCCCCccEEEecCCCCce------ecC-CCCCCCCCcceE
Q 035579 523 LSVYKCSKLESIAERLDNNTSLETIGINFCENLKILPSGLHNLRQLREITIQRCGNLV------SFP-EGGLPCAKLSEL 595 (814)
Q Consensus 523 L~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~~~~l~------~~~-~~~~~l~~L~~L 595 (814)
|++++|..+..+|.. ..+|+.|++++|.+. .+|..+ .+++|++|.+.++.... .++ .....+++|+.|
T Consensus 709 L~Lsgc~~L~~~p~~---~~nL~~L~L~~n~i~-~lP~~~-~l~~L~~L~l~~~~~~~l~~~~~~l~~~~~~~~~sL~~L 783 (1153)
T PLN03210 709 LNLSGCSRLKSFPDI---STNISWLDLDETAIE-EFPSNL-RLENLDELILCEMKSEKLWERVQPLTPLMTMLSPSLTRL 783 (1153)
T ss_pred EeCCCCCCccccccc---cCCcCeeecCCCccc-cccccc-cccccccccccccchhhccccccccchhhhhccccchhe
Confidence 555544444444321 234555555554432 233322 34555555554432100 000 011123456666
Q ss_pred eeccccccccccccccCCCCcceEEecC--ccCccccCCCCCceeEEEecCCcchhhhhhhcccccCCCCcccEEEEecC
Q 035579 596 RIFQCERLEALPKGLHNLTSLQELTIGG--ALPSLEEDGLPTNLHSLDIRGNMEIWKSMIERGRGFHRFSSLRHLTIDGC 673 (814)
Q Consensus 596 ~l~~~~~l~~lp~~~~~l~~L~~L~l~~--~~~~l~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~l~~L~~L~l~~~ 673 (814)
++++|+.+..+|..++++++|+.|++++ .+..+|....+++|+.|++++|......+ ...++|+.|++++|
T Consensus 784 ~Ls~n~~l~~lP~si~~L~~L~~L~Ls~C~~L~~LP~~~~L~sL~~L~Ls~c~~L~~~p-------~~~~nL~~L~Ls~n 856 (1153)
T PLN03210 784 FLSDIPSLVELPSSIQNLHKLEHLEIENCINLETLPTGINLESLESLDLSGCSRLRTFP-------DISTNISDLNLSRT 856 (1153)
T ss_pred eCCCCCCccccChhhhCCCCCCEEECCCCCCcCeeCCCCCccccCEEECCCCCcccccc-------ccccccCEeECCCC
Confidence 6666666666666666666666666665 45555554456777777777776554332 12357888888886
Q ss_pred CCCCccCCccccccCCCCCCCCCcceEEeccCCCCcccccccccCCCCCeEEecCCCCCCccCC
Q 035579 674 DDDMVSFPPEDKRLGTALPLPASLTDLEIGRFPNLERLSSSIVDLQNLTELCLRDCPKLKYFPE 737 (814)
Q Consensus 674 ~~~l~~i~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~l~~L~~L~l~~c~~l~~lp~ 737 (814)
.+..+|... ..+++|+.|++++|++++.+|..+..+++|+.+++++|.+++.++-
T Consensus 857 --~i~~iP~si-------~~l~~L~~L~L~~C~~L~~l~~~~~~L~~L~~L~l~~C~~L~~~~l 911 (1153)
T PLN03210 857 --GIEEVPWWI-------EKFSNLSFLDMNGCNNLQRVSLNISKLKHLETVDFSDCGALTEASW 911 (1153)
T ss_pred --CCccChHHH-------hcCCCCCEEECCCCCCcCccCcccccccCCCeeecCCCcccccccC
Confidence 677788766 4678888888888888888888788888888888888888876643
No 8
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.91 E-value=8.5e-28 Score=234.77 Aligned_cols=481 Identities=19% Similarity=0.258 Sum_probs=230.7
Q ss_pred CCCCcCcccEEEeeeCCCCCCccccCCCCCcccEEEEecCCCCCCCCCCCCCCccceeeecCCcCceeeCccccCCCCCC
Q 035579 114 LKPHKNLEQFGICGYGGTKFPTWLGDCSFSNLVTLKFKDCGVCTTLPSVGQLSSLKHLTVRGMSRVKSLGSEFYGNDSPI 193 (814)
Q Consensus 114 l~~~~~L~~L~l~~~~~~~~p~~~~~~~l~~L~~L~L~~~~~~~~l~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~ 193 (814)
+..-..|+.+.++.|....+.+.+. .+..|++|++.+|+..+..|+++.+..++.++.+++ .+..++.+...
T Consensus 41 wW~qv~l~~lils~N~l~~l~~dl~--nL~~l~vl~~~~n~l~~lp~aig~l~~l~~l~vs~n-~ls~lp~~i~s----- 112 (565)
T KOG0472|consen 41 WWEQVDLQKLILSHNDLEVLREDLK--NLACLTVLNVHDNKLSQLPAAIGELEALKSLNVSHN-KLSELPEQIGS----- 112 (565)
T ss_pred hhhhcchhhhhhccCchhhccHhhh--cccceeEEEeccchhhhCCHHHHHHHHHHHhhcccc-hHhhccHHHhh-----
Confidence 3344567888888887776665554 678888888888887777777888888888888874 44444433322
Q ss_pred CCCCcceeeccccccccccccCCCCCCcccCCcccEEEEccCCCcccCCCCCCCcccceeeccccceeEEcCCCceeeec
Q 035579 194 PFPCLETLRFENMQEWEDWIPLRSDQGVEGFPKLRELHIISCSKLQGTFPEHLPALEMLVIEGSLCKFEIGGCKKVVWRS 273 (814)
Q Consensus 194 ~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~lp~~l~~L~~L~l~~~l~~l~l~~c~~~~~~~ 273 (814)
..+|.+|+++. +.+...... ++.+-.|+.++-.+|. +. ++|..
T Consensus 113 -~~~l~~l~~s~-n~~~el~~~-----i~~~~~l~dl~~~~N~-i~-slp~~---------------------------- 155 (565)
T KOG0472|consen 113 -LISLVKLDCSS-NELKELPDS-----IGRLLDLEDLDATNNQ-IS-SLPED---------------------------- 155 (565)
T ss_pred -hhhhhhhhccc-cceeecCch-----HHHHhhhhhhhccccc-cc-cCchH----------------------------
Confidence 44444444444 223322221 3344444444444444 33 33322
Q ss_pred ccccCCCCCceeeccCCccccccCCCCCCCCCcceEEEcCCCCcchhccchhhhhhcCCCCCeEEEecCCCcccchhhHH
Q 035579 274 ATDHLGSQNSVVCRDTSNQVFLAGPLKPRLPKLEELKINDMKEQTYMWKSHNELLQDICSLRRLTIRSCPKLQSLVAEEE 353 (814)
Q Consensus 274 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~~~~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~l~~~~~ 353 (814)
+ ..+.++..+++.+ ++++.+++...
T Consensus 156 -----------------------------~-------------------------~~~~~l~~l~~~~-n~l~~l~~~~i 180 (565)
T KOG0472|consen 156 -----------------------------M-------------------------VNLSKLSKLDLEG-NKLKALPENHI 180 (565)
T ss_pred -----------------------------H-------------------------HHHHHHHHhhccc-cchhhCCHHHH
Confidence 2 2233333333333 23344433322
Q ss_pred HHHHHHhhhccccccEEEeeccCCccccccccCCCCCcceEeeecCCCCcccCCCCCCCCCcEEEecccCCCCCCchhhh
Q 035579 354 KDQQQQLCELSCRLEYLILSCCEGLVKLPQSSLSLCSLREIGIYKCSSLVSFPEVALPSKLEKIHIGACDALKSLPEAWM 433 (814)
Q Consensus 354 ~~~~~~l~~~~~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~L~~~~~l~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~ 433 (814)
. + ..|++||...|- ++.+|..++.+.+|+.|++.. +++..+|++..+..|+.++++.|. ++.+|....
T Consensus 181 ~-----m----~~L~~ld~~~N~-L~tlP~~lg~l~~L~~LyL~~-Nki~~lPef~gcs~L~Elh~g~N~-i~~lpae~~ 248 (565)
T KOG0472|consen 181 A-----M----KRLKHLDCNSNL-LETLPPELGGLESLELLYLRR-NKIRFLPEFPGCSLLKELHVGENQ-IEMLPAEHL 248 (565)
T ss_pred H-----H----HHHHhcccchhh-hhcCChhhcchhhhHHHHhhh-cccccCCCCCccHHHHHHHhcccH-HHhhHHHHh
Confidence 1 1 344444444443 244444455555555555554 244444444444555555555444 444444442
Q ss_pred cCCCCCccEEEEecCCCCccccccc-CcCccceeeeccccCCcccccccCCCCCCCCCCCCCCccEEeecCCCCccc---
Q 035579 434 CDTNSSLEILYIEGCRSLTYIAAVQ-LPSSLKNLQIHGCYNIKTLTVEEGIPSSSSSRYTSSILEHLSIVGCPSLTC--- 509 (814)
Q Consensus 434 ~~~l~~L~~L~l~~~~~l~~~~~~~-~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~--- 509 (814)
.+++++..||+.+ +++++.|... ...+|++|++++. .+. .+|...+++ .|+.|.+.|.+.-+-
T Consensus 249 -~~L~~l~vLDLRd-Nklke~Pde~clLrsL~rLDlSNN-~is------~Lp~sLgnl----hL~~L~leGNPlrTiRr~ 315 (565)
T KOG0472|consen 249 -KHLNSLLVLDLRD-NKLKEVPDEICLLRSLERLDLSNN-DIS------SLPYSLGNL----HLKFLALEGNPLRTIRRE 315 (565)
T ss_pred -cccccceeeeccc-cccccCchHHHHhhhhhhhcccCC-ccc------cCCcccccc----eeeehhhcCCchHHHHHH
Confidence 3445555555554 2344444332 2233444444443 122 333333332 244444444321110
Q ss_pred cccc--CCCcccccEE----EEecc--------CCcchhhHhhcCCCCcceEeecccCCcccccccCCCC---CCccEEE
Q 035579 510 IFSK--NELPATLESL----SVYKC--------SKLESIAERLDNNTSLETIGINFCENLKILPSGLHNL---RQLREIT 572 (814)
Q Consensus 510 ~~~~--~~~~~~L~~L----~l~~~--------~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l---~~L~~L~ 572 (814)
+... ......|+.- -++.. ............+.+.+.|+++.-+++ .+|.....- .-....+
T Consensus 316 ii~~gT~~vLKyLrs~~~~dglS~se~~~e~~~t~~~~~~~~~~~~i~tkiL~~s~~qlt-~VPdEVfea~~~~~Vt~Vn 394 (565)
T KOG0472|consen 316 IISKGTQEVLKYLRSKIKDDGLSQSEGGTETAMTLPSESFPDIYAIITTKILDVSDKQLT-LVPDEVFEAAKSEIVTSVN 394 (565)
T ss_pred HHcccHHHHHHHHHHhhccCCCCCCcccccccCCCCCCcccchhhhhhhhhhcccccccc-cCCHHHHHHhhhcceEEEe
Confidence 0000 0000000000 00000 000000011222333444444442222 222211111 1134445
Q ss_pred ecCCCCceecCCCCCCCCCcceEeeccccccccccccccCCCCcceEEecC-ccCcccc-CCCCCceeEEEecCCcchhh
Q 035579 573 IQRCGNLVSFPEGGLPCAKLSELRIFQCERLEALPKGLHNLTSLQELTIGG-ALPSLEE-DGLPTNLHSLDIRGNMEIWK 650 (814)
Q Consensus 573 l~~~~~l~~~~~~~~~l~~L~~L~l~~~~~l~~lp~~~~~l~~L~~L~l~~-~~~~l~~-~~~~~~L~~L~l~~n~~~~~ 650 (814)
++.| .+.++|.....+..+.+.-+.+++++..+|..+..+++|..|++++ -+-++|. .+.+-.|+.|+++.|..-..
T Consensus 395 fskN-qL~elPk~L~~lkelvT~l~lsnn~isfv~~~l~~l~kLt~L~L~NN~Ln~LP~e~~~lv~Lq~LnlS~NrFr~l 473 (565)
T KOG0472|consen 395 FSKN-QLCELPKRLVELKELVTDLVLSNNKISFVPLELSQLQKLTFLDLSNNLLNDLPEEMGSLVRLQTLNLSFNRFRML 473 (565)
T ss_pred cccc-hHhhhhhhhHHHHHHHHHHHhhcCccccchHHHHhhhcceeeecccchhhhcchhhhhhhhhheecccccccccc
Confidence 5554 4444554444333333333333334444455555555555555555 3333332 23344466666666632221
Q ss_pred hhhhcccccCCCCcccEEEEecCCCCCccCCccccccCCCCCCCCCcceEEeccCCCCcccccccccCCCCCeEEecCCC
Q 035579 651 SMIERGRGFHRFSSLRHLTIDGCDDDMVSFPPEDKRLGTALPLPASLTDLEIGRFPNLERLSSSIVDLQNLTELCLRDCP 730 (814)
Q Consensus 651 ~~~~~~~~l~~l~~L~~L~l~~~~~~l~~i~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~l~~L~~L~l~~c~ 730 (814)
|..+..+..++.+-.++| .+..++.+.- ..+.+|.+||+.+ |.+..||+.++++++|++|+++++|
T Consensus 474 -----P~~~y~lq~lEtllas~n--qi~~vd~~~l------~nm~nL~tLDL~n-Ndlq~IPp~LgnmtnL~hLeL~gNp 539 (565)
T KOG0472|consen 474 -----PECLYELQTLETLLASNN--QIGSVDPSGL------KNMRNLTTLDLQN-NDLQQIPPILGNMTNLRHLELDGNP 539 (565)
T ss_pred -----hHHHhhHHHHHHHHhccc--cccccChHHh------hhhhhcceeccCC-CchhhCChhhccccceeEEEecCCc
Confidence 133444555666666655 7788877731 5688899999998 8999999999999999999999965
Q ss_pred CCCccCC
Q 035579 731 KLKYFPE 737 (814)
Q Consensus 731 ~l~~lp~ 737 (814)
++ .|.
T Consensus 540 -fr-~Pr 544 (565)
T KOG0472|consen 540 -FR-QPR 544 (565)
T ss_pred -cC-CCH
Confidence 44 554
No 9
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.90 E-value=3.5e-26 Score=234.93 Aligned_cols=363 Identities=16% Similarity=0.197 Sum_probs=277.2
Q ss_pred eEEEcCCCCcchhccchhhhhhcCCCCCeEEEecCCCcccchhhHHHHHHHHhhhccccccEEEeeccCCccccccccCC
Q 035579 308 ELKINDMKEQTYMWKSHNELLQDICSLRRLTIRSCPKLQSLVAEEEKDQQQQLCELSCRLEYLILSCCEGLVKLPQSSLS 387 (814)
Q Consensus 308 ~L~~~~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~~~~~~ 387 (814)
..+-.|+++|.+.+...+.....+.+++-|.+.. ..+.++|.+ +..+ .+|++|.+++|.. ..+...+..
T Consensus 8 FVrGvDfsgNDFsg~~FP~~v~qMt~~~WLkLnr-t~L~~vPeE-----L~~l----qkLEHLs~~HN~L-~~vhGELs~ 76 (1255)
T KOG0444|consen 8 FVRGVDFSGNDFSGDRFPHDVEQMTQMTWLKLNR-TKLEQVPEE-----LSRL----QKLEHLSMAHNQL-ISVHGELSD 76 (1255)
T ss_pred eeecccccCCcCCCCcCchhHHHhhheeEEEech-hhhhhChHH-----HHHH----hhhhhhhhhhhhh-Hhhhhhhcc
Confidence 3444566667666556666667888888888887 578887775 5555 7888888888875 455556778
Q ss_pred CCCcceEeeecCCCC-cccC-CCCCCCCCcEEEecccCCCCCCchhhhcCCCCCccEEEEecCCCCcccccccCcCccce
Q 035579 388 LCSLREIGIYKCSSL-VSFP-EVALPSKLEKIHIGACDALKSLPEAWMCDTNSSLEILYIEGCRSLTYIAAVQLPSSLKN 465 (814)
Q Consensus 388 l~~L~~L~L~~~~~l-~~~~-~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~L~~ 465 (814)
++.|+.+.++.|+.- ..+| ++..+..|..|++++|+ +...|... ..-.++-.|++++|+ +..+|
T Consensus 77 Lp~LRsv~~R~N~LKnsGiP~diF~l~dLt~lDLShNq-L~EvP~~L--E~AKn~iVLNLS~N~-IetIP---------- 142 (1255)
T KOG0444|consen 77 LPRLRSVIVRDNNLKNSGIPTDIFRLKDLTILDLSHNQ-LREVPTNL--EYAKNSIVLNLSYNN-IETIP---------- 142 (1255)
T ss_pred chhhHHHhhhccccccCCCCchhcccccceeeecchhh-hhhcchhh--hhhcCcEEEEcccCc-cccCC----------
Confidence 888888888875422 2244 46668888888888887 78888776 677778888888743 44333
Q ss_pred eeeccccCCcccccccCCCCCCCCCCCCCCccEEeecCCCCcccccccCCCcccccEEEEeccCCcchhhHhhcCCCCcc
Q 035579 466 LQIHGCYNIKTLTVEEGIPSSSSSRYTSSILEHLSIVGCPSLTCIFSKNELPATLESLSVYKCSKLESIAERLDNNTSLE 545 (814)
Q Consensus 466 L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~ 545 (814)
...+. .+..|-.|++++ +.++.+|+.+..+.+|+
T Consensus 143 -------------------n~lfi--------------------------nLtDLLfLDLS~-NrLe~LPPQ~RRL~~Lq 176 (1255)
T KOG0444|consen 143 -------------------NSLFI--------------------------NLTDLLFLDLSN-NRLEMLPPQIRRLSMLQ 176 (1255)
T ss_pred -------------------chHHH--------------------------hhHhHhhhcccc-chhhhcCHHHHHHhhhh
Confidence 21110 011344566666 46677888888899999
Q ss_pred eEeecccCCcccccccCCCCCCccEEEecCCC-CceecCCCCCCCCCcceEeeccccccccccccccCCCCcceEEecC-
Q 035579 546 TIGINFCENLKILPSGLHNLRQLREITIQRCG-NLVSFPEGGLPCAKLSELRIFQCERLEALPKGLHNLTSLQELTIGG- 623 (814)
Q Consensus 546 ~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~~~-~l~~~~~~~~~l~~L~~L~l~~~~~l~~lp~~~~~l~~L~~L~l~~- 623 (814)
+|+|++|.+...--..+..+++|++|.+++.. -+..+|.++..+.+|..+|++.| .+..+|..+.++++|+.|++++
T Consensus 177 tL~Ls~NPL~hfQLrQLPsmtsL~vLhms~TqRTl~N~Ptsld~l~NL~dvDlS~N-~Lp~vPecly~l~~LrrLNLS~N 255 (1255)
T KOG0444|consen 177 TLKLSNNPLNHFQLRQLPSMTSLSVLHMSNTQRTLDNIPTSLDDLHNLRDVDLSEN-NLPIVPECLYKLRNLRRLNLSGN 255 (1255)
T ss_pred hhhcCCChhhHHHHhcCccchhhhhhhcccccchhhcCCCchhhhhhhhhcccccc-CCCcchHHHhhhhhhheeccCcC
Confidence 99999988765333345567888888888753 35568888888999999999887 7888999999999999999998
Q ss_pred ccCcccc-CCCCCceeEEEecCCcchhhhhhhcccccCCCCcccEEEEecCCCCCccCCccccccCCCCCCCCCcceEEe
Q 035579 624 ALPSLEE-DGLPTNLHSLDIRGNMEIWKSMIERGRGFHRFSSLRHLTIDGCDDDMVSFPPEDKRLGTALPLPASLTDLEI 702 (814)
Q Consensus 624 ~~~~l~~-~~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~l~~i~~~~~~~~~~~~~~~~L~~L~l 702 (814)
.++.+.. .+...+|++|+++.|.+...+ ..+..++.|+.|.+.+|....+.||.++ +.+.+|+.+..
T Consensus 256 ~iteL~~~~~~W~~lEtLNlSrNQLt~LP-----~avcKL~kL~kLy~n~NkL~FeGiPSGI-------GKL~~Levf~a 323 (1255)
T KOG0444|consen 256 KITELNMTEGEWENLETLNLSRNQLTVLP-----DAVCKLTKLTKLYANNNKLTFEGIPSGI-------GKLIQLEVFHA 323 (1255)
T ss_pred ceeeeeccHHHHhhhhhhccccchhccch-----HHHhhhHHHHHHHhccCcccccCCccch-------hhhhhhHHHHh
Confidence 7776654 345689999999999876653 5788999999999999888899999998 47899999999
Q ss_pred ccCCCCcccccccccCCCCCeEEecCCCCCCccCCC-CCcCCccEEeecCCchhh
Q 035579 703 GRFPNLERLSSSIVDLQNLTELCLRDCPKLKYFPEK-GLPSSLLRLSILSCPLIE 756 (814)
Q Consensus 703 ~~~~~l~~l~~~~~~l~~L~~L~l~~c~~l~~lp~~-~l~~~L~~L~i~~c~~l~ 756 (814)
++ |+++-+|.++..|..|+.|.+++ +++-.+|+. .+++.|+.||+..+|.+.
T Consensus 324 an-N~LElVPEglcRC~kL~kL~L~~-NrLiTLPeaIHlL~~l~vLDlreNpnLV 376 (1255)
T KOG0444|consen 324 AN-NKLELVPEGLCRCVKLQKLKLDH-NRLITLPEAIHLLPDLKVLDLRENPNLV 376 (1255)
T ss_pred hc-cccccCchhhhhhHHHHHhcccc-cceeechhhhhhcCCcceeeccCCcCcc
Confidence 99 89999999999999999999976 788889875 348999999999998765
No 10
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.90 E-value=1.9e-27 Score=232.35 Aligned_cols=469 Identities=20% Similarity=0.216 Sum_probs=259.0
Q ss_pred cCCCCCcCcccEEEeeeCCCCCCccccCCCCCcccEEEEecCCCCCCCCCCCCCCccceeeecCCcCceeeCccccCCCC
Q 035579 112 DMLKPHKNLEQFGICGYGGTKFPTWLGDCSFSNLVTLKFKDCGVCTTLPSVGQLSSLKHLTVRGMSRVKSLGSEFYGNDS 191 (814)
Q Consensus 112 ~~l~~~~~L~~L~l~~~~~~~~p~~~~~~~l~~L~~L~L~~~~~~~~l~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~ 191 (814)
+.+..+..|.+|+++++....+|..++ .+.++..++.++|+...-.+.++.+.+|+.++++.+ ...+.+.++..
T Consensus 62 ~dl~nL~~l~vl~~~~n~l~~lp~aig--~l~~l~~l~vs~n~ls~lp~~i~s~~~l~~l~~s~n-~~~el~~~i~~--- 135 (565)
T KOG0472|consen 62 EDLKNLACLTVLNVHDNKLSQLPAAIG--ELEALKSLNVSHNKLSELPEQIGSLISLVKLDCSSN-ELKELPDSIGR--- 135 (565)
T ss_pred HhhhcccceeEEEeccchhhhCCHHHH--HHHHHHHhhcccchHhhccHHHhhhhhhhhhhcccc-ceeecCchHHH---
Confidence 345556667777777777777777776 577777777777775555556777777777777774 44444444433
Q ss_pred CCCCCCcceeeccccccccccccCCCCCCcccCCcccEEEEccCCCcccCCCC---CCCcccceeeccccceeEEcCCCc
Q 035579 192 PIPFPCLETLRFENMQEWEDWIPLRSDQGVEGFPKLRELHIISCSKLQGTFPE---HLPALEMLVIEGSLCKFEIGGCKK 268 (814)
Q Consensus 192 ~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~lp~---~l~~L~~L~l~~~l~~l~l~~c~~ 268 (814)
+-.|+.|+..+ +++...... +.++.+|..+++.++. ++ .+|. .+..|++|+. |.
T Consensus 136 ---~~~l~dl~~~~-N~i~slp~~-----~~~~~~l~~l~~~~n~-l~-~l~~~~i~m~~L~~ld~-----------~~- 192 (565)
T KOG0472|consen 136 ---LLDLEDLDATN-NQISSLPED-----MVNLSKLSKLDLEGNK-LK-ALPENHIAMKRLKHLDC-----------NS- 192 (565)
T ss_pred ---Hhhhhhhhccc-cccccCchH-----HHHHHHHHHhhccccc-hh-hCCHHHHHHHHHHhccc-----------ch-
Confidence 55666666655 344443322 4567777888888877 65 5554 2334444443 11
Q ss_pred eeeecccccCCCCCceeeccCCccccccCCCCCCCCCcceEEEcCCCCcchhccchhhhhhcCCCCCeEEEecCCCcccc
Q 035579 269 VVWRSATDHLGSQNSVVCRDTSNQVFLAGPLKPRLPKLEELKINDMKEQTYMWKSHNELLQDICSLRRLTIRSCPKLQSL 348 (814)
Q Consensus 269 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~~~~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~l 348 (814)
..-+.+|+.++.+++|..+++..|++. ..+ .|..+..|++|.+.. +.++.+
T Consensus 193 -------------------------N~L~tlP~~lg~l~~L~~LyL~~Nki~--~lP-ef~gcs~L~Elh~g~-N~i~~l 243 (565)
T KOG0472|consen 193 -------------------------NLLETLPPELGGLESLELLYLRRNKIR--FLP-EFPGCSLLKELHVGE-NQIEML 243 (565)
T ss_pred -------------------------hhhhcCChhhcchhhhHHHHhhhcccc--cCC-CCCccHHHHHHHhcc-cHHHhh
Confidence 234566778888888888888877761 222 346666677776666 355555
Q ss_pred hhhHHHHHHHHhhhccccccEEEeeccCCccccccccCCCCCcceEeeecCCCCcccC-CCCCCCCCcEEEecccCCCCC
Q 035579 349 VAEEEKDQQQQLCELSCRLEYLILSCCEGLVKLPQSSLSLCSLREIGIYKCSSLVSFP-EVALPSKLEKIHIGACDALKS 427 (814)
Q Consensus 349 ~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~L~~~~~l~~~~-~~~~~~~L~~L~l~~~~~l~~ 427 (814)
+.+ ...++ +++.+||+..|.+ +++|+.+..+++|+.||+++| .++.+| .++.+ +|+.|-+.+|. ++.
T Consensus 244 pae----~~~~L----~~l~vLDLRdNkl-ke~Pde~clLrsL~rLDlSNN-~is~Lp~sLgnl-hL~~L~leGNP-lrT 311 (565)
T KOG0472|consen 244 PAE----HLKHL----NSLLVLDLRDNKL-KEVPDEICLLRSLERLDLSNN-DISSLPYSLGNL-HLKFLALEGNP-LRT 311 (565)
T ss_pred HHH----Hhccc----ccceeeecccccc-ccCchHHHHhhhhhhhcccCC-ccccCCcccccc-eeeehhhcCCc-hHH
Confidence 543 23344 6677777777763 666777777777777777764 444444 45556 67777777776 544
Q ss_pred CchhhhcCC-CCCccEEEE-ecCCCCcccccccCcCccceeeeccccCCcccccccCCCCCCC-CCCCCCCccEEeecCC
Q 035579 428 LPEAWMCDT-NSSLEILYI-EGCRSLTYIAAVQLPSSLKNLQIHGCYNIKTLTVEEGIPSSSS-SRYTSSILEHLSIVGC 504 (814)
Q Consensus 428 ~~~~~~~~~-l~~L~~L~l-~~~~~l~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~-~~~~~~~L~~L~l~~~ 504 (814)
+...+..++ -.-|++|.= ..|..+. ....-+. .+...|.+.+ .....-..+.|++++-
T Consensus 312 iRr~ii~~gT~~vLKyLrs~~~~dglS-----------------~se~~~e--~~~t~~~~~~~~~~~~i~tkiL~~s~~ 372 (565)
T KOG0472|consen 312 IRREIISKGTQEVLKYLRSKIKDDGLS-----------------QSEGGTE--TAMTLPSESFPDIYAIITTKILDVSDK 372 (565)
T ss_pred HHHHHHcccHHHHHHHHHHhhccCCCC-----------------CCccccc--ccCCCCCCcccchhhhhhhhhhccccc
Confidence 443332110 000111100 0000000 0000000 0001111111 1111122344443331
Q ss_pred CCcccccccC----CCcccccEEEEeccCCcchhhHhhcCCCCcceEeecccCCcccccccCCCCCCccEEEecCCCCce
Q 035579 505 PSLTCIFSKN----ELPATLESLSVYKCSKLESIAERLDNNTSLETIGINFCENLKILPSGLHNLRQLREITIQRCGNLV 580 (814)
Q Consensus 505 ~~l~~~~~~~----~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~~~~l~ 580 (814)
. ++. .|.. +-..-...++++.| .+.++|..+..++.+.+.-+..|+..+.+|..+..+++|.-|++++| .+.
T Consensus 373 q-lt~-VPdEVfea~~~~~Vt~VnfskN-qL~elPk~L~~lkelvT~l~lsnn~isfv~~~l~~l~kLt~L~L~NN-~Ln 448 (565)
T KOG0472|consen 373 Q-LTL-VPDEVFEAAKSEIVTSVNFSKN-QLCELPKRLVELKELVTDLVLSNNKISFVPLELSQLQKLTFLDLSNN-LLN 448 (565)
T ss_pred c-ccc-CCHHHHHHhhhcceEEEecccc-hHhhhhhhhHHHHHHHHHHHhhcCccccchHHHHhhhcceeeecccc-hhh
Confidence 1 111 1110 00112455666663 44556666666666655555555666666666777777777777765 666
Q ss_pred ecCCCCCCCCCcceEeeccccccccccccccCCCCcceEEecCccCccccCCCCCceeEEEecCCcchhhhhhhcccccC
Q 035579 581 SFPEGGLPCAKLSELRIFQCERLEALPKGLHNLTSLQELTIGGALPSLEEDGLPTNLHSLDIRGNMEIWKSMIERGRGFH 660 (814)
Q Consensus 581 ~~~~~~~~l~~L~~L~l~~~~~l~~lp~~~~~l~~L~~L~l~~~~~~l~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~l~ 660 (814)
.+|..++.+..|+.++++.| ..+.+|..+..+..++.+-. ++|......+ ..++
T Consensus 449 ~LP~e~~~lv~Lq~LnlS~N-rFr~lP~~~y~lq~lEtlla---------------------s~nqi~~vd~----~~l~ 502 (565)
T KOG0472|consen 449 DLPEEMGSLVRLQTLNLSFN-RFRMLPECLYELQTLETLLA---------------------SNNQIGSVDP----SGLK 502 (565)
T ss_pred hcchhhhhhhhhheeccccc-ccccchHHHhhHHHHHHHHh---------------------ccccccccCh----HHhh
Confidence 77777776667777777776 55666655544444443333 3333332222 3466
Q ss_pred CCCcccEEEEecCCCCCccCCccccccCCCCCCCCCcceEEeccCCCCc
Q 035579 661 RFSSLRHLTIDGCDDDMVSFPPEDKRLGTALPLPASLTDLEIGRFPNLE 709 (814)
Q Consensus 661 ~l~~L~~L~l~~~~~~l~~i~~~~~~~~~~~~~~~~L~~L~l~~~~~l~ 709 (814)
++.+|..||+.+| .+..+|... +.+++|++|++++ |.++
T Consensus 503 nm~nL~tLDL~nN--dlq~IPp~L-------gnmtnL~hLeL~g-Npfr 541 (565)
T KOG0472|consen 503 NMRNLTTLDLQNN--DLQQIPPIL-------GNMTNLRHLELDG-NPFR 541 (565)
T ss_pred hhhhcceeccCCC--chhhCChhh-------ccccceeEEEecC-CccC
Confidence 6777777777766 677777776 3677777777777 4555
No 11
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.89 E-value=1.8e-22 Score=244.66 Aligned_cols=307 Identities=22% Similarity=0.322 Sum_probs=220.9
Q ss_pred CCCCCeEEEecCCCcccchhhHHHHHHHHhhhccccccEEEeeccCCccccccccCCCCCcceEeeecCCCCcccCCCCC
Q 035579 331 ICSLRRLTIRSCPKLQSLVAEEEKDQQQQLCELSCRLEYLILSCCEGLVKLPQSSLSLCSLREIGIYKCSSLVSFPEVAL 410 (814)
Q Consensus 331 l~~L~~L~l~~~~~l~~l~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~L~~~~~l~~~~~~~~ 410 (814)
.++|+.|.+.++ .++.+|.. + .+.+|+.|++.+|.+ ..++..+..+++|+.|+|++|..++.+|.+..
T Consensus 588 p~~Lr~L~~~~~-~l~~lP~~-----f-----~~~~L~~L~L~~s~l-~~L~~~~~~l~~Lk~L~Ls~~~~l~~ip~ls~ 655 (1153)
T PLN03210 588 PPKLRLLRWDKY-PLRCMPSN-----F-----RPENLVKLQMQGSKL-EKLWDGVHSLTGLRNIDLRGSKNLKEIPDLSM 655 (1153)
T ss_pred CcccEEEEecCC-CCCCCCCc-----C-----CccCCcEEECcCccc-cccccccccCCCCCEEECCCCCCcCcCCcccc
Confidence 356999999986 46666653 1 127999999999974 67788888999999999999988999999999
Q ss_pred CCCCcEEEecccCCCCCCchhhhcCCCCCccEEEEecCCCCcccccccCcCccceeeeccccCCcccccccCCCCCCCCC
Q 035579 411 PSKLEKIHIGACDALKSLPEAWMCDTNSSLEILYIEGCRSLTYIAAVQLPSSLKNLQIHGCYNIKTLTVEEGIPSSSSSR 490 (814)
Q Consensus 411 ~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~ 490 (814)
+++|+.|++++|..+..+|..+ ..+++|+.|++++|..++.+|....+++|+.|++++|..++ .+|..
T Consensus 656 l~~Le~L~L~~c~~L~~lp~si--~~L~~L~~L~L~~c~~L~~Lp~~i~l~sL~~L~Lsgc~~L~------~~p~~---- 723 (1153)
T PLN03210 656 ATNLETLKLSDCSSLVELPSSI--QYLNKLEDLDMSRCENLEILPTGINLKSLYRLNLSGCSRLK------SFPDI---- 723 (1153)
T ss_pred CCcccEEEecCCCCccccchhh--hccCCCCEEeCCCCCCcCccCCcCCCCCCCEEeCCCCCCcc------ccccc----
Confidence 9999999999999899999887 88999999999999999999887678889999999998776 55542
Q ss_pred CCCCCccEEeecCCCCcccccccCCCcccccEEEEeccCCcc-------hhhHhhcCCCCcceEeecccCCcccccccCC
Q 035579 491 YTSSILEHLSIVGCPSLTCIFSKNELPATLESLSVYKCSKLE-------SIAERLDNNTSLETIGINFCENLKILPSGLH 563 (814)
Q Consensus 491 ~~~~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~l~~~~~~~-------~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~ 563 (814)
..+|++|+++++. +.. +|....+++|+.|.+.++.... ..+......++|+.|++++|.....+|..++
T Consensus 724 --~~nL~~L~L~~n~-i~~-lP~~~~l~~L~~L~l~~~~~~~l~~~~~~l~~~~~~~~~sL~~L~Ls~n~~l~~lP~si~ 799 (1153)
T PLN03210 724 --STNISWLDLDETA-IEE-FPSNLRLENLDELILCEMKSEKLWERVQPLTPLMTMLSPSLTRLFLSDIPSLVELPSSIQ 799 (1153)
T ss_pred --cCCcCeeecCCCc-ccc-ccccccccccccccccccchhhccccccccchhhhhccccchheeCCCCCCccccChhhh
Confidence 1468888887765 333 3433345567777776643211 0111223346777777777777777777777
Q ss_pred CCCCccEEEecCCCCceecCCCCCCCCCcceEeeccccccccccccccCCCCcceEEecC-ccCcccc-CCCCCceeEEE
Q 035579 564 NLRQLREITIQRCGNLVSFPEGGLPCAKLSELRIFQCERLEALPKGLHNLTSLQELTIGG-ALPSLEE-DGLPTNLHSLD 641 (814)
Q Consensus 564 ~l~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~~~~l~~lp~~~~~l~~L~~L~l~~-~~~~l~~-~~~~~~L~~L~ 641 (814)
++++|+.|++++|..++.+|..+ .+++|+.|++++|..++.+|.. .++|+.|++++ .+..+|. ...+++|+.|+
T Consensus 800 ~L~~L~~L~Ls~C~~L~~LP~~~-~L~sL~~L~Ls~c~~L~~~p~~---~~nL~~L~Ls~n~i~~iP~si~~l~~L~~L~ 875 (1153)
T PLN03210 800 NLHKLEHLEIENCINLETLPTGI-NLESLESLDLSGCSRLRTFPDI---STNISDLNLSRTGIEEVPWWIEKFSNLSFLD 875 (1153)
T ss_pred CCCCCCEEECCCCCCcCeeCCCC-CccccCEEECCCCCcccccccc---ccccCEeECCCCCCccChHHHhcCCCCCEEE
Confidence 77778888887777777777654 5677777777777777666643 24666666666 5555543 34456666666
Q ss_pred ecCCcchhhhhhhcccccCCCCcccEEEEecC
Q 035579 642 IRGNMEIWKSMIERGRGFHRFSSLRHLTIDGC 673 (814)
Q Consensus 642 l~~n~~~~~~~~~~~~~l~~l~~L~~L~l~~~ 673 (814)
+++|+.+...+ ..+..+++|+.+++++|
T Consensus 876 L~~C~~L~~l~----~~~~~L~~L~~L~l~~C 903 (1153)
T PLN03210 876 MNGCNNLQRVS----LNISKLKHLETVDFSDC 903 (1153)
T ss_pred CCCCCCcCccC----cccccccCCCeeecCCC
Confidence 66665555433 33455566666666653
No 12
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.87 E-value=1.4e-24 Score=223.23 Aligned_cols=355 Identities=18% Similarity=0.254 Sum_probs=239.6
Q ss_pred cccc-CCCCCCCCCcceEEEcCCCCcchhccchhhhhhcCCCCCeEEEecCCCcccchhhHHHHHHHHhhhccccccEEE
Q 035579 293 VFLA-GPLKPRLPKLEELKINDMKEQTYMWKSHNELLQDICSLRRLTIRSCPKLQSLVAEEEKDQQQQLCELSCRLEYLI 371 (814)
Q Consensus 293 ~~~~-~~~~~~~~~L~~L~~~~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~l~~~~~~L~~L~ 371 (814)
+.++ +.+|.....++.++.+.+..... ...+.-++.+.+|++|.++++ ++..+..+ +..+ +.|+.++
T Consensus 17 NDFsg~~FP~~v~qMt~~~WLkLnrt~L--~~vPeEL~~lqkLEHLs~~HN-~L~~vhGE-----Ls~L----p~LRsv~ 84 (1255)
T KOG0444|consen 17 NDFSGDRFPHDVEQMTQMTWLKLNRTKL--EQVPEELSRLQKLEHLSMAHN-QLISVHGE-----LSDL----PRLRSVI 84 (1255)
T ss_pred CcCCCCcCchhHHHhhheeEEEechhhh--hhChHHHHHHhhhhhhhhhhh-hhHhhhhh-----hccc----hhhHHHh
Confidence 3444 56788888888888888776655 345666789999999999995 56555433 4445 8999999
Q ss_pred eeccCCcc-ccccccCCCCCcceEeeecCCCCcccC-CCCCCCCCcEEEecccCCCCCCchhhhcCCCCCccEEEEecCC
Q 035579 372 LSCCEGLV-KLPQSSLSLCSLREIGIYKCSSLVSFP-EVALPSKLEKIHIGACDALKSLPEAWMCDTNSSLEILYIEGCR 449 (814)
Q Consensus 372 L~~~~~~~-~~~~~~~~l~~L~~L~L~~~~~l~~~~-~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~~~ 449 (814)
+..|..-. -+|..+..+..|..|||++| .++..| .+....++-.|++++|+ +..+|...+ .++..|-.||+++|.
T Consensus 85 ~R~N~LKnsGiP~diF~l~dLt~lDLShN-qL~EvP~~LE~AKn~iVLNLS~N~-IetIPn~lf-inLtDLLfLDLS~Nr 161 (1255)
T KOG0444|consen 85 VRDNNLKNSGIPTDIFRLKDLTILDLSHN-QLREVPTNLEYAKNSIVLNLSYNN-IETIPNSLF-INLTDLLFLDLSNNR 161 (1255)
T ss_pred hhccccccCCCCchhcccccceeeecchh-hhhhcchhhhhhcCcEEEEcccCc-cccCCchHH-HhhHhHhhhccccch
Confidence 99887654 57888999999999999995 677777 46678899999999998 999998877 889999999999854
Q ss_pred CCcccccccCcCccceeeeccccCCcccccccCCCCCCCCCCCCCCccEEeecCCCCcccccccCCCcccccEEEEeccC
Q 035579 450 SLTYIAAVQLPSSLKNLQIHGCYNIKTLTVEEGIPSSSSSRYTSSILEHLSIVGCPSLTCIFSKNELPATLESLSVYKCS 529 (814)
Q Consensus 450 ~l~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~l~~~~ 529 (814)
+..+| +..+.| ..|++|++++++....-+.......+|++|.+++.+
T Consensus 162 -Le~LP-----PQ~RRL---------------------------~~LqtL~Ls~NPL~hfQLrQLPsmtsL~vLhms~Tq 208 (1255)
T KOG0444|consen 162 -LEMLP-----PQIRRL---------------------------SMLQTLKLSNNPLNHFQLRQLPSMTSLSVLHMSNTQ 208 (1255)
T ss_pred -hhhcC-----HHHHHH---------------------------hhhhhhhcCCChhhHHHHhcCccchhhhhhhccccc
Confidence 44333 222222 124444444433221111112223467777777765
Q ss_pred Cc-chhhHhhcCCCCcceEeecccCCcccccccCCCCCCccEEEecCCCCceecCCCCCCCCCcceEeeccccccccccc
Q 035579 530 KL-ESIAERLDNNTSLETIGINFCENLKILPSGLHNLRQLREITIQRCGNLVSFPEGGLPCAKLSELRIFQCERLEALPK 608 (814)
Q Consensus 530 ~~-~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~~~~l~~lp~ 608 (814)
.+ ..+|..+..+.+|..+|++.|.+. .+|..+.++++|+.|++++| .++.+........+|++|+++.| .++.+|.
T Consensus 209 RTl~N~Ptsld~l~NL~dvDlS~N~Lp-~vPecly~l~~LrrLNLS~N-~iteL~~~~~~W~~lEtLNlSrN-QLt~LP~ 285 (1255)
T KOG0444|consen 209 RTLDNIPTSLDDLHNLRDVDLSENNLP-IVPECLYKLRNLRRLNLSGN-KITELNMTEGEWENLETLNLSRN-QLTVLPD 285 (1255)
T ss_pred chhhcCCCchhhhhhhhhccccccCCC-cchHHHhhhhhhheeccCcC-ceeeeeccHHHHhhhhhhccccc-hhccchH
Confidence 43 457778888888888888876654 45677788888888888887 67777666666678888888887 7778888
Q ss_pred cccCCCCcceEEecC---ccCcccc-CCCCCceeEEEecCCcchhhhhhhcccccCCCCcccEEEEecCCCCCccCCccc
Q 035579 609 GLHNLTSLQELTIGG---ALPSLEE-DGLPTNLHSLDIRGNMEIWKSMIERGRGFHRFSSLRHLTIDGCDDDMVSFPPED 684 (814)
Q Consensus 609 ~~~~l~~L~~L~l~~---~~~~l~~-~~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~l~~i~~~~ 684 (814)
.+..++.|+.|.+.+ .+..+|. ++.+.+|+++..++|.+.-. |.+++++..|+.|.+++| .+.++|+.+
T Consensus 286 avcKL~kL~kLy~n~NkL~FeGiPSGIGKL~~Levf~aanN~LElV-----PEglcRC~kL~kL~L~~N--rLiTLPeaI 358 (1255)
T KOG0444|consen 286 AVCKLTKLTKLYANNNKLTFEGIPSGIGKLIQLEVFHAANNKLELV-----PEGLCRCVKLQKLKLDHN--RLITLPEAI 358 (1255)
T ss_pred HHhhhHHHHHHHhccCcccccCCccchhhhhhhHHHHhhccccccC-----chhhhhhHHHHHhccccc--ceeechhhh
Confidence 777777777776655 4444443 44455556655555543221 145555666666666554 555566555
Q ss_pred cccCCCCCCCCCcceEEeccCCCCcccc
Q 035579 685 KRLGTALPLPASLTDLEIGRFPNLERLS 712 (814)
Q Consensus 685 ~~~~~~~~~~~~L~~L~l~~~~~l~~l~ 712 (814)
..++.|+.|++..++++..-|
T Consensus 359 -------HlL~~l~vLDlreNpnLVMPP 379 (1255)
T KOG0444|consen 359 -------HLLPDLKVLDLRENPNLVMPP 379 (1255)
T ss_pred -------hhcCCcceeeccCCcCccCCC
Confidence 345556666666555554433
No 13
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.63 E-value=2.7e-15 Score=168.63 Aligned_cols=256 Identities=28% Similarity=0.358 Sum_probs=135.6
Q ss_pred ccccEEEeeccCCccccccccCCCCCcceEeeecCCCCcccCCCCCCCCCcEEEecccCCCCCCchhhhcCCCCCccEEE
Q 035579 365 CRLEYLILSCCEGLVKLPQSSLSLCSLREIGIYKCSSLVSFPEVALPSKLEKIHIGACDALKSLPEAWMCDTNSSLEILY 444 (814)
Q Consensus 365 ~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~L~~~~~l~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~ 444 (814)
.+-..|+++++.+ ..+|..+. ++|+.|++.+| .++.+|. .+++|++|++++|+ +..+|.. .++|+.|+
T Consensus 201 ~~~~~LdLs~~~L-tsLP~~l~--~~L~~L~L~~N-~Lt~LP~--lp~~Lk~LdLs~N~-LtsLP~l-----p~sL~~L~ 268 (788)
T PRK15387 201 NGNAVLNVGESGL-TTLPDCLP--AHITTLVIPDN-NLTSLPA--LPPELRTLEVSGNQ-LTSLPVL-----PPGLLELS 268 (788)
T ss_pred CCCcEEEcCCCCC-CcCCcchh--cCCCEEEccCC-cCCCCCC--CCCCCcEEEecCCc-cCcccCc-----ccccceee
Confidence 3456777777764 45666554 36777877774 5666664 35777888887776 6666542 35677777
Q ss_pred EecCCCCcccccccCcCccceeeeccccCCcccccccCCCCCCCCCCCCCCccEEeecCCCCcccccccCCCcccccEEE
Q 035579 445 IEGCRSLTYIAAVQLPSSLKNLQIHGCYNIKTLTVEEGIPSSSSSRYTSSILEHLSIVGCPSLTCIFSKNELPATLESLS 524 (814)
Q Consensus 445 l~~~~~l~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~ 524 (814)
+++|. ++.++. .+.+|+.|++.++ +++ .+|. .+++|+.|+
T Consensus 269 Ls~N~-L~~Lp~--lp~~L~~L~Ls~N-~Lt------~LP~------------------------------~p~~L~~Ld 308 (788)
T PRK15387 269 IFSNP-LTHLPA--LPSGLCKLWIFGN-QLT------SLPV------------------------------LPPGLQELS 308 (788)
T ss_pred ccCCc-hhhhhh--chhhcCEEECcCC-ccc------cccc------------------------------cccccceeE
Confidence 77653 443332 2333444444333 111 1111 122444555
Q ss_pred EeccCCcchhhHhhcCCCCcceEeecccCCcccccccCCCCCCccEEEecCCCCceecCCCCCCCCCcceEeeccccccc
Q 035579 525 VYKCSKLESIAERLDNNTSLETIGINFCENLKILPSGLHNLRQLREITIQRCGNLVSFPEGGLPCAKLSELRIFQCERLE 604 (814)
Q Consensus 525 l~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~~~~l~ 604 (814)
+++|... .+|.. ..+|+.|++++|.+.+ +|.. ..+|+.|++++| .+..+|.. .++|+.|++++| .+.
T Consensus 309 LS~N~L~-~Lp~l---p~~L~~L~Ls~N~L~~-LP~l---p~~Lq~LdLS~N-~Ls~LP~l---p~~L~~L~Ls~N-~L~ 375 (788)
T PRK15387 309 VSDNQLA-SLPAL---PSELCKLWAYNNQLTS-LPTL---PSGLQELSVSDN-QLASLPTL---PSELYKLWAYNN-RLT 375 (788)
T ss_pred CCCCccc-cCCCC---cccccccccccCcccc-cccc---ccccceEecCCC-ccCCCCCC---Ccccceehhhcc-ccc
Confidence 5444222 22221 1234445555544432 2211 124555555554 33444431 124444455444 233
Q ss_pred cccccccCCCCcceEEecCccCccccCCCCCceeEEEecCCcchhhhhhhcccccCCCCcccEEEEecCCCCCccCCccc
Q 035579 605 ALPKGLHNLTSLQELTIGGALPSLEEDGLPTNLHSLDIRGNMEIWKSMIERGRGFHRFSSLRHLTIDGCDDDMVSFPPED 684 (814)
Q Consensus 605 ~lp~~~~~l~~L~~L~l~~~~~~l~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~l~~i~~~~ 684 (814)
.+| .. +.+|+.|++++|.+...+. ..++|+.|++++| .+..+|..
T Consensus 376 ~LP----------------------~l--~~~L~~LdLs~N~Lt~LP~--------l~s~L~~LdLS~N--~LssIP~l- 420 (788)
T PRK15387 376 SLP----------------------AL--PSGLKELIVSGNRLTSLPV--------LPSELKELMVSGN--RLTSLPML- 420 (788)
T ss_pred cCc----------------------cc--ccccceEEecCCcccCCCC--------cccCCCEEEccCC--cCCCCCcc-
Confidence 333 21 2456666666665543211 1246777777776 56666642
Q ss_pred cccCCCCCCCCCcceEEeccCCCCcccccccccCCCCCeEEecCCC
Q 035579 685 KRLGTALPLPASLTDLEIGRFPNLERLSSSIVDLQNLTELCLRDCP 730 (814)
Q Consensus 685 ~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~l~~L~~L~l~~c~ 730 (814)
+.+|+.|++++ |.++.+|..+..+++|+.|++++++
T Consensus 421 ---------~~~L~~L~Ls~-NqLt~LP~sl~~L~~L~~LdLs~N~ 456 (788)
T PRK15387 421 ---------PSGLLSLSVYR-NQLTRLPESLIHLSSETTVNLEGNP 456 (788)
T ss_pred ---------hhhhhhhhhcc-CcccccChHHhhccCCCeEECCCCC
Confidence 35677777777 6777777777777777888877743
No 14
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.59 E-value=1.5e-14 Score=162.71 Aligned_cols=254 Identities=26% Similarity=0.337 Sum_probs=156.9
Q ss_pred CCcceEeeecCCCCcccCCCCCCCCCcEEEecccCCCCCCchhhhcCCCCCccEEEEecCCCCcccccccCcCccceeee
Q 035579 389 CSLREIGIYKCSSLVSFPEVALPSKLEKIHIGACDALKSLPEAWMCDTNSSLEILYIEGCRSLTYIAAVQLPSSLKNLQI 468 (814)
Q Consensus 389 ~~L~~L~L~~~~~l~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~L~~L~l 468 (814)
..-..|+++++ .++.+|. ...++|+.|++.+|+ +..+|.. .++|++|++++| .++.+|. .+++|+.|++
T Consensus 201 ~~~~~LdLs~~-~LtsLP~-~l~~~L~~L~L~~N~-Lt~LP~l-----p~~Lk~LdLs~N-~LtsLP~--lp~sL~~L~L 269 (788)
T PRK15387 201 NGNAVLNVGES-GLTTLPD-CLPAHITTLVIPDNN-LTSLPAL-----PPELRTLEVSGN-QLTSLPV--LPPGLLELSI 269 (788)
T ss_pred CCCcEEEcCCC-CCCcCCc-chhcCCCEEEccCCc-CCCCCCC-----CCCCcEEEecCC-ccCcccC--cccccceeec
Confidence 34567888885 6667775 234578888888877 6667653 467888888775 4444431 2333444433
Q ss_pred ccccCCcccccccCCCCCCCCCCCCCCccEEeecCCCCcccccccCCCcccccEEEEeccCCcchhhHhhcCCCCcceEe
Q 035579 469 HGCYNIKTLTVEEGIPSSSSSRYTSSILEHLSIVGCPSLTCIFSKNELPATLESLSVYKCSKLESIAERLDNNTSLETIG 548 (814)
Q Consensus 469 ~~~~~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~ 548 (814)
.++ . +..+|.. ..+|+.|+
T Consensus 270 s~N---------------------------------------------------------~-L~~Lp~l---p~~L~~L~ 288 (788)
T PRK15387 270 FSN---------------------------------------------------------P-LTHLPAL---PSGLCKLW 288 (788)
T ss_pred cCC---------------------------------------------------------c-hhhhhhc---hhhcCEEE
Confidence 332 1 1122211 12344444
Q ss_pred ecccCCcccccccCCCCCCccEEEecCCCCceecCCCCCCCCCcceEeeccccccccccccccCCCCcceEEecC-ccCc
Q 035579 549 INFCENLKILPSGLHNLRQLREITIQRCGNLVSFPEGGLPCAKLSELRIFQCERLEALPKGLHNLTSLQELTIGG-ALPS 627 (814)
Q Consensus 549 L~~n~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~~~~l~~lp~~~~~l~~L~~L~l~~-~~~~ 627 (814)
+++|.+.. +|. ..++|+.|++++| .+..+|.. ..+|+.|++++| .++.+|.. ..+|+.|++++ .+..
T Consensus 289 Ls~N~Lt~-LP~---~p~~L~~LdLS~N-~L~~Lp~l---p~~L~~L~Ls~N-~L~~LP~l---p~~Lq~LdLS~N~Ls~ 356 (788)
T PRK15387 289 IFGNQLTS-LPV---LPPGLQELSVSDN-QLASLPAL---PSELCKLWAYNN-QLTSLPTL---PSGLQELSVSDNQLAS 356 (788)
T ss_pred CcCCcccc-ccc---cccccceeECCCC-ccccCCCC---cccccccccccC-cccccccc---ccccceEecCCCccCC
Confidence 44444432 222 1245556666555 34444431 124555666655 44445431 13566666666 5555
Q ss_pred cccCCCCCceeEEEecCCcchhhhhhhcccccCCCCcccEEEEecCCCCCccCCccccccCCCCCCCCCcceEEeccCCC
Q 035579 628 LEEDGLPTNLHSLDIRGNMEIWKSMIERGRGFHRFSSLRHLTIDGCDDDMVSFPPEDKRLGTALPLPASLTDLEIGRFPN 707 (814)
Q Consensus 628 l~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~l~~i~~~~~~~~~~~~~~~~L~~L~l~~~~~ 707 (814)
+|. .+++|+.|++++|.+...+ . ...+|+.|++++| .+..+|.. +++|+.|++++ |.
T Consensus 357 LP~--lp~~L~~L~Ls~N~L~~LP-----~---l~~~L~~LdLs~N--~Lt~LP~l----------~s~L~~LdLS~-N~ 413 (788)
T PRK15387 357 LPT--LPSELYKLWAYNNRLTSLP-----A---LPSGLKELIVSGN--RLTSLPVL----------PSELKELMVSG-NR 413 (788)
T ss_pred CCC--CCcccceehhhccccccCc-----c---cccccceEEecCC--cccCCCCc----------ccCCCEEEccC-Cc
Confidence 543 2468888999988766432 1 2357999999997 77778853 47899999999 78
Q ss_pred CcccccccccCCCCCeEEecCCCCCCccCCCCC-cCCccEEeecCCc
Q 035579 708 LERLSSSIVDLQNLTELCLRDCPKLKYFPEKGL-PSSLLRLSILSCP 753 (814)
Q Consensus 708 l~~l~~~~~~l~~L~~L~l~~c~~l~~lp~~~l-~~~L~~L~i~~c~ 753 (814)
++.+|.. +.+|+.|++++ ++++.+|.... +++|+.|++++|+
T Consensus 414 LssIP~l---~~~L~~L~Ls~-NqLt~LP~sl~~L~~L~~LdLs~N~ 456 (788)
T PRK15387 414 LTSLPML---PSGLLSLSVYR-NQLTRLPESLIHLSSETTVNLEGNP 456 (788)
T ss_pred CCCCCcc---hhhhhhhhhcc-CcccccChHHhhccCCCeEECCCCC
Confidence 9999853 35789999999 57999997532 7899999999997
No 15
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.52 E-value=4.6e-16 Score=153.09 Aligned_cols=119 Identities=15% Similarity=0.171 Sum_probs=82.3
Q ss_pred ccCCCCCCCCCcceEEEcCCCCcchhccchhhhhhcCCCCCeEEEecCCCcccchhhHHHHHHHHhhhccccccEEEeec
Q 035579 295 LAGPLKPRLPKLEELKINDMKEQTYMWKSHNELLQDICSLRRLTIRSCPKLQSLVAEEEKDQQQQLCELSCRLEYLILSC 374 (814)
Q Consensus 295 ~~~~~~~~~~~L~~L~~~~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~l~~~~~~L~~L~L~~ 374 (814)
++..-+.+|..+++|+.+|+++|.+.. +.+..|..++++.+|-+.+++++++++...| ..+ ..|+.|.+.-
T Consensus 79 I~~iP~~aF~~l~~LRrLdLS~N~Is~-I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~F----~gL----~slqrLllNa 149 (498)
T KOG4237|consen 79 ISSIPPGAFKTLHRLRRLDLSKNNISF-IAPDAFKGLASLLSLVLYGNNKITDLPKGAF----GGL----SSLQRLLLNA 149 (498)
T ss_pred cccCChhhccchhhhceecccccchhh-cChHhhhhhHhhhHHHhhcCCchhhhhhhHh----hhH----HHHHHHhcCh
Confidence 444445678888888888888887733 4566678888888888888778888887644 333 6677777777
Q ss_pred cCCccccccccCCCCCcceEeeecCCCCcccCC--CCCCCCCcEEEecccC
Q 035579 375 CEGLVKLPQSSLSLCSLREIGIYKCSSLVSFPE--VALPSKLEKIHIGACD 423 (814)
Q Consensus 375 ~~~~~~~~~~~~~l~~L~~L~L~~~~~l~~~~~--~~~~~~L~~L~l~~~~ 423 (814)
|++.-...+.+..+++|..|.+.++ .+..++. +..+..++.+++..|.
T Consensus 150 n~i~Cir~~al~dL~~l~lLslyDn-~~q~i~~~tf~~l~~i~tlhlA~np 199 (498)
T KOG4237|consen 150 NHINCIRQDALRDLPSLSLLSLYDN-KIQSICKGTFQGLAAIKTLHLAQNP 199 (498)
T ss_pred hhhcchhHHHHHHhhhcchhcccch-hhhhhccccccchhccchHhhhcCc
Confidence 7765555667777888888887773 5555554 3336667777766665
No 16
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.49 E-value=9.2e-14 Score=157.58 Aligned_cols=73 Identities=21% Similarity=0.269 Sum_probs=31.5
Q ss_pred cccEEEEeccCCcchhhHhhcCCCCcceEeecccCCcccccccCCCCCCccEEEecCCCCceecCCCCCCCCCcceEeec
Q 035579 519 TLESLSVYKCSKLESIAERLDNNTSLETIGINFCENLKILPSGLHNLRQLREITIQRCGNLVSFPEGGLPCAKLSELRIF 598 (814)
Q Consensus 519 ~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~ 598 (814)
+|+.|++++|.. ..+|..+. ++|+.|++++|.+.. +|..+ .++|+.|++++| .+..+|..+. ++|+.|+++
T Consensus 263 ~L~~L~Ls~N~L-~~LP~~l~--~sL~~L~Ls~N~Lt~-LP~~l--p~sL~~L~Ls~N-~Lt~LP~~l~--~sL~~L~Ls 333 (754)
T PRK15370 263 ALQSLDLFHNKI-SCLPENLP--EELRYLSVYDNSIRT-LPAHL--PSGITHLNVQSN-SLTALPETLP--PGLKTLEAG 333 (754)
T ss_pred CCCEEECcCCcc-CccccccC--CCCcEEECCCCcccc-Ccccc--hhhHHHHHhcCC-ccccCCcccc--ccceecccc
Confidence 344455544322 23443322 355555555554443 22222 124555555554 3333443222 345555555
Q ss_pred cc
Q 035579 599 QC 600 (814)
Q Consensus 599 ~~ 600 (814)
+|
T Consensus 334 ~N 335 (754)
T PRK15370 334 EN 335 (754)
T ss_pred CC
Confidence 54
No 17
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.44 E-value=3.3e-13 Score=153.12 Aligned_cols=179 Identities=22% Similarity=0.383 Sum_probs=92.3
Q ss_pred CCCcEEEecccCCCCCCchhhhcCCCCCccEEEEecCCCCcccccccCcCccceeeeccccCCcccccccCCCCCCCCCC
Q 035579 412 SKLEKIHIGACDALKSLPEAWMCDTNSSLEILYIEGCRSLTYIAAVQLPSSLKNLQIHGCYNIKTLTVEEGIPSSSSSRY 491 (814)
Q Consensus 412 ~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~ 491 (814)
.+...|+++++. +..+|..+ .++|+.|++++| .++.+|... +.+|+.|+++++ +++ .+|.
T Consensus 178 ~~~~~L~L~~~~-LtsLP~~I----p~~L~~L~Ls~N-~LtsLP~~l-~~nL~~L~Ls~N-~Lt------sLP~------ 237 (754)
T PRK15370 178 NNKTELRLKILG-LTTIPACI----PEQITTLILDNN-ELKSLPENL-QGNIKTLYANSN-QLT------SIPA------ 237 (754)
T ss_pred cCceEEEeCCCC-cCcCCccc----ccCCcEEEecCC-CCCcCChhh-ccCCCEEECCCC-ccc------cCCh------
Confidence 356778888876 77777654 357888888875 455544322 234555554443 122 1111
Q ss_pred CCCCccEEeecCCCCcccccccCCCcccccEEEEeccCCcchhhHhhcCCCCcceEeecccCCcccccccCCCCCCccEE
Q 035579 492 TSSILEHLSIVGCPSLTCIFSKNELPATLESLSVYKCSKLESIAERLDNNTSLETIGINFCENLKILPSGLHNLRQLREI 571 (814)
Q Consensus 492 ~~~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L 571 (814)
.++++|+.|++++|... .+|..+. .+|+.|++++|.+.. +|..+. ++|+.|
T Consensus 238 -----------------------~l~~~L~~L~Ls~N~L~-~LP~~l~--s~L~~L~Ls~N~L~~-LP~~l~--~sL~~L 288 (754)
T PRK15370 238 -----------------------TLPDTIQEMELSINRIT-ELPERLP--SALQSLDLFHNKISC-LPENLP--EELRYL 288 (754)
T ss_pred -----------------------hhhccccEEECcCCccC-cCChhHh--CCCCEEECcCCccCc-cccccC--CCCcEE
Confidence 12235666666665433 4454443 366777777666553 444332 466777
Q ss_pred EecCCCCceecCCCCCCCCCcceEeeccccccccccccccCCCCcceEEecC-ccCccccCCCCCceeEEEecCCc
Q 035579 572 TIQRCGNLVSFPEGGLPCAKLSELRIFQCERLEALPKGLHNLTSLQELTIGG-ALPSLEEDGLPTNLHSLDIRGNM 646 (814)
Q Consensus 572 ~l~~~~~l~~~~~~~~~l~~L~~L~l~~~~~l~~lp~~~~~l~~L~~L~l~~-~~~~l~~~~~~~~L~~L~l~~n~ 646 (814)
++++| .++.+|..+. ++|+.|++++| .+..+|..+. ++|+.|++++ .+..+|. ..+++|+.|++++|.
T Consensus 289 ~Ls~N-~Lt~LP~~lp--~sL~~L~Ls~N-~Lt~LP~~l~--~sL~~L~Ls~N~Lt~LP~-~l~~sL~~L~Ls~N~ 357 (754)
T PRK15370 289 SVYDN-SIRTLPAHLP--SGITHLNVQSN-SLTALPETLP--PGLKTLEAGENALTSLPA-SLPPELQVLDVSKNQ 357 (754)
T ss_pred ECCCC-ccccCcccch--hhHHHHHhcCC-ccccCCcccc--ccceeccccCCccccCCh-hhcCcccEEECCCCC
Confidence 77666 4555554332 35666666665 4444543321 3444444444 3333332 112344444444443
No 18
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.43 E-value=3.3e-15 Score=147.17 Aligned_cols=281 Identities=20% Similarity=0.218 Sum_probs=173.5
Q ss_pred CCCcccCCCCCCCCCcEEEecccCCCCCCchhhhcCCCCCccEEEEecCCCCcccccccCcCccceeeeccccCCccccc
Q 035579 400 SSLVSFPEVALPSKLEKIHIGACDALKSLPEAWMCDTNSSLEILYIEGCRSLTYIAAVQLPSSLKNLQIHGCYNIKTLTV 479 (814)
Q Consensus 400 ~~l~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~L~~L~l~~~~~l~~~~~ 479 (814)
..++.+|. ..++.-..+++..|+ ++.+|+..| +.+++|+.||++.|. ++.|....|..
T Consensus 56 ~GL~eVP~-~LP~~tveirLdqN~-I~~iP~~aF-~~l~~LRrLdLS~N~-Is~I~p~AF~G------------------ 113 (498)
T KOG4237|consen 56 KGLTEVPA-NLPPETVEIRLDQNQ-ISSIPPGAF-KTLHRLRRLDLSKNN-ISFIAPDAFKG------------------ 113 (498)
T ss_pred CCcccCcc-cCCCcceEEEeccCC-cccCChhhc-cchhhhceecccccc-hhhcChHhhhh------------------
Confidence 34555552 235566677777777 777777666 777777777777743 33332221110
Q ss_pred ccCCCCCCCCCCCCCCccEEeecCCCCcccccccCCCcccccEEEEeccCCcchhh-HhhcCCCCcceEeecccCCcccc
Q 035579 480 EEGIPSSSSSRYTSSILEHLSIVGCPSLTCIFSKNELPATLESLSVYKCSKLESIA-ERLDNNTSLETIGINFCENLKIL 558 (814)
Q Consensus 480 ~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~l~~~~~~~~~~-~~~~~l~~L~~L~L~~n~~~~~~ 558 (814)
..++.+|-+.+++.++.+| ..|+++.+++-|.+.-|++.-..
T Consensus 114 -------------------------------------L~~l~~Lvlyg~NkI~~l~k~~F~gL~slqrLllNan~i~Cir 156 (498)
T KOG4237|consen 114 -------------------------------------LASLLSLVLYGNNKITDLPKGAFGGLSSLQRLLLNANHINCIR 156 (498)
T ss_pred -------------------------------------hHhhhHHHhhcCCchhhhhhhHhhhHHHHHHHhcChhhhcchh
Confidence 0123333333433344443 35777777777777777777777
Q ss_pred cccCCCCCCccEEEecCCCCceecCC-CCCCCCCcceEeeccccccc------------cccccccCCCCcceEEecC-c
Q 035579 559 PSGLHNLRQLREITIQRCGNLVSFPE-GGLPCAKLSELRIFQCERLE------------ALPKGLHNLTSLQELTIGG-A 624 (814)
Q Consensus 559 ~~~~~~l~~L~~L~l~~~~~l~~~~~-~~~~l~~L~~L~l~~~~~l~------------~lp~~~~~l~~L~~L~l~~-~ 624 (814)
.+.+..+++|..|.+.+| .++.++. .+.++..++.+++..|+.+. ..|..++...-..-..+.+ .
T Consensus 157 ~~al~dL~~l~lLslyDn-~~q~i~~~tf~~l~~i~tlhlA~np~icdCnL~wla~~~a~~~ietsgarc~~p~rl~~~R 235 (498)
T KOG4237|consen 157 QDALRDLPSLSLLSLYDN-KIQSICKGTFQGLAAIKTLHLAQNPFICDCNLPWLADDLAMNPIETSGARCVSPYRLYYKR 235 (498)
T ss_pred HHHHHHhhhcchhcccch-hhhhhccccccchhccchHhhhcCccccccccchhhhHHhhchhhcccceecchHHHHHHH
Confidence 777777888888888776 6666766 56677778888777775221 1122222222221111222 2
Q ss_pred cCccccCCCCCceeEE---EecCCcchhhhhhhcccccCCCCcccEEEEecCCCCCccCCccccccCCCCCCCCCcceEE
Q 035579 625 LPSLEEDGLPTNLHSL---DIRGNMEIWKSMIERGRGFHRFSSLRHLTIDGCDDDMVSFPPEDKRLGTALPLPASLTDLE 701 (814)
Q Consensus 625 ~~~l~~~~~~~~L~~L---~l~~n~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~l~~i~~~~~~~~~~~~~~~~L~~L~ 701 (814)
+.+++...+...++.+ ..+.|......+. ..|+.+++|+.|++++| .+..|.+.++ .....+++|.
T Consensus 236 i~q~~a~kf~c~~esl~s~~~~~d~~d~~cP~---~cf~~L~~L~~lnlsnN--~i~~i~~~aF------e~~a~l~eL~ 304 (498)
T KOG4237|consen 236 INQEDARKFLCSLESLPSRLSSEDFPDSICPA---KCFKKLPNLRKLNLSNN--KITRIEDGAF------EGAAELQELY 304 (498)
T ss_pred hcccchhhhhhhHHhHHHhhccccCcCCcChH---HHHhhcccceEeccCCC--ccchhhhhhh------cchhhhhhhh
Confidence 3333322222222222 2233322222222 56889999999999987 7888888775 5678899999
Q ss_pred eccCCCCccccc-ccccCCCCCeEEecCCCCCCccCCCCC--cCCccEEeecCCc
Q 035579 702 IGRFPNLERLSS-SIVDLQNLTELCLRDCPKLKYFPEKGL--PSSLLRLSILSCP 753 (814)
Q Consensus 702 l~~~~~l~~l~~-~~~~l~~L~~L~l~~c~~l~~lp~~~l--~~~L~~L~i~~c~ 753 (814)
|.. |+++.+.. .+.++..|+.|++++ ++++.+....+ ..+|.+|.+..+|
T Consensus 305 L~~-N~l~~v~~~~f~~ls~L~tL~L~~-N~it~~~~~aF~~~~~l~~l~l~~Np 357 (498)
T KOG4237|consen 305 LTR-NKLEFVSSGMFQGLSGLKTLSLYD-NQITTVAPGAFQTLFSLSTLNLLSNP 357 (498)
T ss_pred cCc-chHHHHHHHhhhccccceeeeecC-CeeEEEecccccccceeeeeehccCc
Confidence 999 88998877 678899999999999 68888877666 6788888888765
No 19
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.41 E-value=5.5e-15 Score=128.52 Aligned_cols=162 Identities=23% Similarity=0.346 Sum_probs=115.6
Q ss_pred hcCCCCcceEeecccCCcccccccCCCCCCccEEEecCCCCceecCCCCCCCCCcceEeeccccccccccccccCCCCcc
Q 035579 538 LDNNTSLETIGINFCENLKILPSGLHNLRQLREITIQRCGNLVSFPEGGLPCAKLSELRIFQCERLEALPKGLHNLTSLQ 617 (814)
Q Consensus 538 ~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~~~~l~~lp~~~~~l~~L~ 617 (814)
+..+.+.+.|.+++|+++. +|..+..+.+|+.|++++| .++++|..+.++++|+.|+++-| .+..+|.+|+.++.|+
T Consensus 29 Lf~~s~ITrLtLSHNKl~~-vppnia~l~nlevln~~nn-qie~lp~~issl~klr~lnvgmn-rl~~lprgfgs~p~le 105 (264)
T KOG0617|consen 29 LFNMSNITRLTLSHNKLTV-VPPNIAELKNLEVLNLSNN-QIEELPTSISSLPKLRILNVGMN-RLNILPRGFGSFPALE 105 (264)
T ss_pred ccchhhhhhhhcccCceee-cCCcHHHhhhhhhhhcccc-hhhhcChhhhhchhhhheecchh-hhhcCccccCCCchhh
Confidence 3445556666666665553 3345666666666666665 56666666666666666666655 5556666665555555
Q ss_pred eEEecCccCccccCCCCCceeEEEecCCcchhhhhhhcccccCCCCcccEEEEecCCCCCccCCccccccCCCCCCCCCc
Q 035579 618 ELTIGGALPSLEEDGLPTNLHSLDIRGNMEIWKSMIERGRGFHRFSSLRHLTIDGCDDDMVSFPPEDKRLGTALPLPASL 697 (814)
Q Consensus 618 ~L~l~~~~~~l~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~l~~i~~~~~~~~~~~~~~~~L 697 (814)
. ||+..|+......+ ..|..++.|+.|++++| ..+.+|.+. +.+++|
T Consensus 106 v---------------------ldltynnl~e~~lp---gnff~m~tlralyl~dn--dfe~lp~dv-------g~lt~l 152 (264)
T KOG0617|consen 106 V---------------------LDLTYNNLNENSLP---GNFFYMTTLRALYLGDN--DFEILPPDV-------GKLTNL 152 (264)
T ss_pred h---------------------hhccccccccccCC---cchhHHHHHHHHHhcCC--CcccCChhh-------hhhcce
Confidence 4 45555544433332 55677888999999997 899999998 478999
Q ss_pred ceEEeccCCCCcccccccccCCCCCeEEecCCCCCCccCC
Q 035579 698 TDLEIGRFPNLERLSSSIVDLQNLTELCLRDCPKLKYFPE 737 (814)
Q Consensus 698 ~~L~l~~~~~l~~l~~~~~~l~~L~~L~l~~c~~l~~lp~ 737 (814)
+.|.++. |.+-++|..++.++.|+.|++.+ ++++.+|+
T Consensus 153 qil~lrd-ndll~lpkeig~lt~lrelhiqg-nrl~vlpp 190 (264)
T KOG0617|consen 153 QILSLRD-NDLLSLPKEIGDLTRLRELHIQG-NRLTVLPP 190 (264)
T ss_pred eEEeecc-CchhhCcHHHHHHHHHHHHhccc-ceeeecCh
Confidence 9999999 88899999999999999999999 68988876
No 20
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.28 E-value=5.2e-14 Score=122.50 Aligned_cols=161 Identities=20% Similarity=0.306 Sum_probs=121.0
Q ss_pred cccccEEEEeccCCcchhhHhhcCCCCcceEeecccCCcccccccCCCCCCccEEEecCCCCceecCCCCCCCCCcceEe
Q 035579 517 PATLESLSVYKCSKLESIAERLDNNTSLETIGINFCENLKILPSGLHNLRQLREITIQRCGNLVSFPEGGLPCAKLSELR 596 (814)
Q Consensus 517 ~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~ 596 (814)
.+.++.|.+++| .+..+|+.++.+.+|+.|++.+|++. .+|..++.+++|+.|+++-| .+..+|.+|+.++.|+.||
T Consensus 32 ~s~ITrLtLSHN-Kl~~vppnia~l~nlevln~~nnqie-~lp~~issl~klr~lnvgmn-rl~~lprgfgs~p~levld 108 (264)
T KOG0617|consen 32 MSNITRLTLSHN-KLTVVPPNIAELKNLEVLNLSNNQIE-ELPTSISSLPKLRILNVGMN-RLNILPRGFGSFPALEVLD 108 (264)
T ss_pred hhhhhhhhcccC-ceeecCCcHHHhhhhhhhhcccchhh-hcChhhhhchhhhheecchh-hhhcCccccCCCchhhhhh
Confidence 456888899985 56678889999999999999997765 56788999999999999976 7888999999999999999
Q ss_pred eccccc-cccccccccCCCCcceEEecC-ccCccccCCCCCceeEEEecCCcchhhhhhhcccccCCCCcccEEEEecCC
Q 035579 597 IFQCER-LEALPKGLHNLTSLQELTIGG-ALPSLEEDGLPTNLHSLDIRGNMEIWKSMIERGRGFHRFSSLRHLTIDGCD 674 (814)
Q Consensus 597 l~~~~~-l~~lp~~~~~l~~L~~L~l~~-~~~~l~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~l~~L~~L~l~~~~ 674 (814)
+..|+. -..+|..|..+..|+.|++++ .++.+| ..++.+++|+.|.+.+|
T Consensus 109 ltynnl~e~~lpgnff~m~tlralyl~dndfe~lp---------------------------~dvg~lt~lqil~lrdn- 160 (264)
T KOG0617|consen 109 LTYNNLNENSLPGNFFYMTTLRALYLGDNDFEILP---------------------------PDVGKLTNLQILSLRDN- 160 (264)
T ss_pred ccccccccccCCcchhHHHHHHHHHhcCCCcccCC---------------------------hhhhhhcceeEEeeccC-
Confidence 999864 345788877777776666665 444443 33455666666666665
Q ss_pred CCCccCCccccccCCCCCCCCCcceEEeccCCCCccccccccc
Q 035579 675 DDMVSFPPEDKRLGTALPLPASLTDLEIGRFPNLERLSSSIVD 717 (814)
Q Consensus 675 ~~l~~i~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~ 717 (814)
.+-++|.+.+ .+++|++|++.+ |.++-+|+.+++
T Consensus 161 -dll~lpkeig-------~lt~lrelhiqg-nrl~vlppel~~ 194 (264)
T KOG0617|consen 161 -DLLSLPKEIG-------DLTRLRELHIQG-NRLTVLPPELAN 194 (264)
T ss_pred -chhhCcHHHH-------HHHHHHHHhccc-ceeeecChhhhh
Confidence 5666666663 466777777777 677777754443
No 21
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.21 E-value=4.8e-12 Score=133.77 Aligned_cols=17 Identities=29% Similarity=0.440 Sum_probs=10.3
Q ss_pred hhhhcCCCCCeEEEecC
Q 035579 326 ELLQDICSLRRLTIRSC 342 (814)
Q Consensus 326 ~~~~~l~~L~~L~l~~~ 342 (814)
..+..+.+|++|++++|
T Consensus 17 ~~~~~l~~L~~l~l~~~ 33 (319)
T cd00116 17 ELLPKLLCLQVLRLEGN 33 (319)
T ss_pred HHHHHHhhccEEeecCC
Confidence 34455566666776665
No 22
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.15 E-value=4.8e-12 Score=133.74 Aligned_cols=155 Identities=19% Similarity=0.148 Sum_probs=73.2
Q ss_pred cccEEEEeccCCc------chhhHhhcCCCCcceEeecccCCcccccccCCCCCC---ccEEEecCCCCce----ecCCC
Q 035579 519 TLESLSVYKCSKL------ESIAERLDNNTSLETIGINFCENLKILPSGLHNLRQ---LREITIQRCGNLV----SFPEG 585 (814)
Q Consensus 519 ~L~~L~l~~~~~~------~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~---L~~L~l~~~~~l~----~~~~~ 585 (814)
+++.++++++... ..++..+..+++|+.|++++|.+....+..+..+.+ |++|++++|.... .+...
T Consensus 52 ~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~ls~~~~~~~~~~~l~~~ 131 (319)
T cd00116 52 SLKELCLSLNETGRIPRGLQSLLQGLTKGCGLQELDLSDNALGPDGCGVLESLLRSSSLQELKLNNNGLGDRGLRLLAKG 131 (319)
T ss_pred CceEEeccccccCCcchHHHHHHHHHHhcCceeEEEccCCCCChhHHHHHHHHhccCcccEEEeeCCccchHHHHHHHHH
Confidence 3555555554332 233445556667777777776665444333333333 7777776663221 11112
Q ss_pred CCCC-CCcceEeeccccccc----cccccccCCCCcceEEecC-ccCc-----ccc-CCCCCceeEEEecCCcchhhhhh
Q 035579 586 GLPC-AKLSELRIFQCERLE----ALPKGLHNLTSLQELTIGG-ALPS-----LEE-DGLPTNLHSLDIRGNMEIWKSMI 653 (814)
Q Consensus 586 ~~~l-~~L~~L~l~~~~~l~----~lp~~~~~l~~L~~L~l~~-~~~~-----l~~-~~~~~~L~~L~l~~n~~~~~~~~ 653 (814)
+..+ ++|+.|++++|.... .++..+..+++|++|++++ .+.. +.. ....++|++|++++|........
T Consensus 132 l~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~ 211 (319)
T cd00116 132 LKDLPPALEKLVLGRNRLEGASCEALAKALRANRDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNGLTDEGAS 211 (319)
T ss_pred HHhCCCCceEEEcCCCcCCchHHHHHHHHHHhCCCcCEEECcCCCCchHHHHHHHHHHHhCCCCCEEeccCCccChHHHH
Confidence 2333 566777776664321 2233444555566666555 2221 110 11124556666665554332221
Q ss_pred hcccccCCCCcccEEEEecC
Q 035579 654 ERGRGFHRFSSLRHLTIDGC 673 (814)
Q Consensus 654 ~~~~~l~~l~~L~~L~l~~~ 673 (814)
..+..+..+++|++|++++|
T Consensus 212 ~l~~~~~~~~~L~~L~ls~n 231 (319)
T cd00116 212 ALAETLASLKSLEVLNLGDN 231 (319)
T ss_pred HHHHHhcccCCCCEEecCCC
Confidence 11133445555555555554
No 23
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=98.99 E-value=2.1e-10 Score=132.59 Aligned_cols=216 Identities=23% Similarity=0.236 Sum_probs=137.3
Q ss_pred CCCcccceeecCCCCccccccccCCCCCCCCccCceEEcCCCCCCccccccccCCCceEEEccccCCCChhhhHHhhccc
Q 035579 2 GNLIKLHHLNNSNTDSLEEMPLGIGKLTCLQTLSNFVVGKDSGSRLPELKLLTYLRGTLHISKLENVTDIGDAKEAQLDV 81 (814)
Q Consensus 2 ~~l~~L~~L~l~~~~~~~~lp~~i~~L~~L~~L~~~~~~~~~~~~~~~l~~l~~L~~~L~l~~~~~~~~~~~~~~~~l~~ 81 (814)
..++.||+|||++|..+.+||.+|++|-+||+|+....+- ...|..+++|..|. .|++....... ..+.....
T Consensus 568 ~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~~t~I--~~LP~~l~~Lk~L~-~Lnl~~~~~l~----~~~~i~~~ 640 (889)
T KOG4658|consen 568 RSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLDLSDTGI--SHLPSGLGNLKKLI-YLNLEVTGRLE----SIPGILLE 640 (889)
T ss_pred hhCcceEEEECCCCCccCcCChHHhhhhhhhcccccCCCc--cccchHHHHHHhhh-eeccccccccc----cccchhhh
Confidence 4689999999999988999999999999999995544332 23566688888888 77776544332 22455666
Q ss_pred CCCcceeEEEEecCCCCCCCcchhhHHhhhcCCCCCcCcccEEEeeeCCCCCCccccCCCCCccc----EEEEecCCCCC
Q 035579 82 KENLRELLLQWTRSTDGSSSWKAETEMGVLDMLKPHKNLEQFGICGYGGTKFPTWLGDCSFSNLV----TLKFKDCGVCT 157 (814)
Q Consensus 82 l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~p~~~~~~~l~~L~----~L~L~~~~~~~ 157 (814)
+++|++|.+.+.... .....++.+..+++|+.+.....+...+-+.. ....|+ .+.+.+|...+
T Consensus 641 L~~Lr~L~l~~s~~~---------~~~~~l~el~~Le~L~~ls~~~~s~~~~e~l~---~~~~L~~~~~~l~~~~~~~~~ 708 (889)
T KOG4658|consen 641 LQSLRVLRLPRSALS---------NDKLLLKELENLEHLENLSITISSVLLLEDLL---GMTRLRSLLQSLSIEGCSKRT 708 (889)
T ss_pred cccccEEEeeccccc---------cchhhHHhhhcccchhhheeecchhHhHhhhh---hhHHHHHHhHhhhhcccccce
Confidence 999999999866522 22234556677888888887544331111111 233333 44444555566
Q ss_pred CCCCCCCCCccceeeecCCcCceeeCccccCCCCCC-CCCCcceeeccccccccccccCCCCCCcccCCcccEEEEccCC
Q 035579 158 TLPSVGQLSSLKHLTVRGMSRVKSLGSEFYGNDSPI-PFPCLETLRFENMQEWEDWIPLRSDQGVEGFPKLRELHIISCS 236 (814)
Q Consensus 158 ~l~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~-~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~l~~L~~L~l~~c~ 236 (814)
....+..+.+|+.|.+.+|...+....-.... ... .|+++..+...+|........ ....|+|+.|.+.+|.
T Consensus 709 ~~~~~~~l~~L~~L~i~~~~~~e~~~~~~~~~-~~~~~f~~l~~~~~~~~~~~r~l~~------~~f~~~L~~l~l~~~~ 781 (889)
T KOG4658|consen 709 LISSLGSLGNLEELSILDCGISEIVIEWEESL-IVLLCFPNLSKVSILNCHMLRDLTW------LLFAPHLTSLSLVSCR 781 (889)
T ss_pred eecccccccCcceEEEEcCCCchhhccccccc-chhhhHHHHHHHHhhccccccccch------hhccCcccEEEEeccc
Confidence 66678999999999999886543322111110 011 155666666666655544332 2357899999999998
Q ss_pred CcccCCC
Q 035579 237 KLQGTFP 243 (814)
Q Consensus 237 ~l~~~lp 243 (814)
.+.+.+|
T Consensus 782 ~~e~~i~ 788 (889)
T KOG4658|consen 782 LLEDIIP 788 (889)
T ss_pred ccccCCC
Confidence 6664433
No 24
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=98.86 E-value=2.1e-10 Score=114.72 Aligned_cols=277 Identities=20% Similarity=0.305 Sum_probs=127.1
Q ss_pred CCCcceEEEcCCCCcchhccchhhhhhcCCCCCeEEEecCCCcccchhhHHHHHHHHhhhccccccEEEeeccCCccc--
Q 035579 303 LPKLEELKINDMKEQTYMWKSHNELLQDICSLRRLTIRSCPKLQSLVAEEEKDQQQQLCELSCRLEYLILSCCEGLVK-- 380 (814)
Q Consensus 303 ~~~L~~L~~~~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~-- 380 (814)
.++++.|.+.+|...+. ....++-..+++|+.+++..|..++.. .++.+++-|++|++|++++|+.+..
T Consensus 163 CpnIehL~l~gc~~iTd--~s~~sla~~C~~l~~l~L~~c~~iT~~-------~Lk~la~gC~kL~~lNlSwc~qi~~~g 233 (483)
T KOG4341|consen 163 CPNIEHLALYGCKKITD--SSLLSLARYCRKLRHLNLHSCSSITDV-------SLKYLAEGCRKLKYLNLSWCPQISGNG 233 (483)
T ss_pred CCchhhhhhhcceeccH--HHHHHHHHhcchhhhhhhcccchhHHH-------HHHHHHHhhhhHHHhhhccCchhhcCc
Confidence 34455555544442222 233334445556666666665555443 2333444455666666666554332
Q ss_pred cccccCCCCCcceEeeecCCCCcc--cCC-CCCCCCCcEEEecccCCCCCCchhhhcCCCCCccEEEEecCCCCcccccc
Q 035579 381 LPQSSLSLCSLREIGIYKCSSLVS--FPE-VALPSKLEKIHIGACDALKSLPEAWMCDTNSSLEILYIEGCRSLTYIAAV 457 (814)
Q Consensus 381 ~~~~~~~l~~L~~L~L~~~~~l~~--~~~-~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~ 457 (814)
+...+..+..++.+.+.||...+. +-. -+....+.++++..|..+.+.........+..|+.|+.++|..+++.+..
T Consensus 234 v~~~~rG~~~l~~~~~kGC~e~~le~l~~~~~~~~~i~~lnl~~c~~lTD~~~~~i~~~c~~lq~l~~s~~t~~~d~~l~ 313 (483)
T KOG4341|consen 234 VQALQRGCKELEKLSLKGCLELELEALLKAAAYCLEILKLNLQHCNQLTDEDLWLIACGCHALQVLCYSSCTDITDEVLW 313 (483)
T ss_pred chHHhccchhhhhhhhcccccccHHHHHHHhccChHhhccchhhhccccchHHHHHhhhhhHhhhhcccCCCCCchHHHH
Confidence 112233344455554445433221 100 11233344444445544444332222234455555555555544443221
Q ss_pred ---cCcCccceeeeccccCCcccccccCCCCCCCCCCCCCCccEEeecCCCCcccc-c-ccCCCcccccEEEEeccCCcc
Q 035579 458 ---QLPSSLKNLQIHGCYNIKTLTVEEGIPSSSSSRYTSSILEHLSIVGCPSLTCI-F-SKNELPATLESLSVYKCSKLE 532 (814)
Q Consensus 458 ---~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~-~-~~~~~~~~L~~L~l~~~~~~~ 532 (814)
....+|+. +.+.+|..+++. + ......+.|+.+++.+|....
T Consensus 314 aLg~~~~~L~~---------------------------------l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~~~~~ 360 (483)
T KOG4341|consen 314 ALGQHCHNLQV---------------------------------LELSGCQQFSDRGFTMLGRNCPHLERLDLEECGLIT 360 (483)
T ss_pred HHhcCCCceEE---------------------------------EeccccchhhhhhhhhhhcCChhhhhhcccccceeh
Confidence 22334444 444444433331 1 112223345666665554332
Q ss_pred h--hhHhhcCCCCcceEeecccCCcccc-----cccCCCCCCccEEEecCCCCceecC-CCCCCCCCcceEeeccccccc
Q 035579 533 S--IAERLDNNTSLETIGINFCENLKIL-----PSGLHNLRQLREITIQRCGNLVSFP-EGGLPCAKLSELRIFQCERLE 604 (814)
Q Consensus 533 ~--~~~~~~~l~~L~~L~L~~n~~~~~~-----~~~~~~l~~L~~L~l~~~~~l~~~~-~~~~~l~~L~~L~l~~~~~l~ 604 (814)
. +...-.+++.|+++.+++|..+... ...-..+..|+.+.+++|+.+.+-. .....+++|+.+++.+|....
T Consensus 361 d~tL~sls~~C~~lr~lslshce~itD~gi~~l~~~~c~~~~l~~lEL~n~p~i~d~~Le~l~~c~~Leri~l~~~q~vt 440 (483)
T KOG4341|consen 361 DGTLASLSRNCPRLRVLSLSHCELITDEGIRHLSSSSCSLEGLEVLELDNCPLITDATLEHLSICRNLERIELIDCQDVT 440 (483)
T ss_pred hhhHhhhccCCchhccCChhhhhhhhhhhhhhhhhccccccccceeeecCCCCchHHHHHHHhhCcccceeeeechhhhh
Confidence 2 2333445666777777766655432 2222345667777777776554322 133456677777777775544
Q ss_pred ccc--ccccCCCCcceEEe
Q 035579 605 ALP--KGLHNLTSLQELTI 621 (814)
Q Consensus 605 ~lp--~~~~~l~~L~~L~l 621 (814)
.-+ ..-.++|++++..+
T Consensus 441 k~~i~~~~~~lp~i~v~a~ 459 (483)
T KOG4341|consen 441 KEAISRFATHLPNIKVHAY 459 (483)
T ss_pred hhhhHHHHhhCccceehhh
Confidence 322 12245555554433
No 25
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=98.81 E-value=1.5e-10 Score=115.75 Aligned_cols=90 Identities=17% Similarity=0.230 Sum_probs=57.7
Q ss_pred CcccEEEEecCCCCCCCC---CCCCCCccceeeecCCcCceeeCccccCCCCCCCCCCcceeeccccccccccccCCCCC
Q 035579 143 SNLVTLKFKDCGVCTTLP---SVGQLSSLKHLTVRGMSRVKSLGSEFYGNDSPIPFPCLETLRFENMQEWEDWIPLRSDQ 219 (814)
Q Consensus 143 ~~L~~L~L~~~~~~~~l~---~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~ 219 (814)
..|+.|.+.+|.-..+-+ ...++|++++|++.+|..+++....-.+.. +++|+.|++..|..++...-...
T Consensus 138 g~lk~LSlrG~r~v~~sslrt~~~~CpnIehL~l~gc~~iTd~s~~sla~~----C~~l~~l~L~~c~~iT~~~Lk~l-- 211 (483)
T KOG4341|consen 138 GFLKELSLRGCRAVGDSSLRTFASNCPNIEHLALYGCKKITDSSLLSLARY----CRKLRHLNLHSCSSITDVSLKYL-- 211 (483)
T ss_pred cccccccccccccCCcchhhHHhhhCCchhhhhhhcceeccHHHHHHHHHh----cchhhhhhhcccchhHHHHHHHH--
Confidence 457777777777555544 255677888888888776655443222222 67777777777776665443322
Q ss_pred CcccCCcccEEEEccCCCcc
Q 035579 220 GVEGFPKLRELHIISCSKLQ 239 (814)
Q Consensus 220 ~~~~l~~L~~L~l~~c~~l~ 239 (814)
...+++|++++++-|+.++
T Consensus 212 -a~gC~kL~~lNlSwc~qi~ 230 (483)
T KOG4341|consen 212 -AEGCRKLKYLNLSWCPQIS 230 (483)
T ss_pred -HHhhhhHHHhhhccCchhh
Confidence 3457788888888887665
No 26
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=98.74 E-value=4.6e-09 Score=121.67 Aligned_cols=226 Identities=24% Similarity=0.289 Sum_probs=149.9
Q ss_pred ccccEEEEeccC--CcchhhHhhcCCCCcceEeecccCCcccccccCCCCCCccEEEecCCCCceecCCCCCCCCCcceE
Q 035579 518 ATLESLSVYKCS--KLESIAERLDNNTSLETIGINFCENLKILPSGLHNLRQLREITIQRCGNLVSFPEGGLPCAKLSEL 595 (814)
Q Consensus 518 ~~L~~L~l~~~~--~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L 595 (814)
+.|++|-+.++. ........|..++.|++||+++|...+.+|..++.+-+|+.|++++. .+..+|.++..+..|.+|
T Consensus 545 ~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~~t-~I~~LP~~l~~Lk~L~~L 623 (889)
T KOG4658|consen 545 PKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLDLSDT-GISHLPSGLGNLKKLIYL 623 (889)
T ss_pred CccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhcccccCC-CccccchHHHHHHhhhee
Confidence 468888888876 33334455888999999999999888999999999999999999986 778899999999999999
Q ss_pred eeccccccccccccccCCCCcceEEecC-c----cCccccCCCCCceeEEEecCCcchhhhhhhcccccCCCCccc----
Q 035579 596 RIFQCERLEALPKGLHNLTSLQELTIGG-A----LPSLEEDGLPTNLHSLDIRGNMEIWKSMIERGRGFHRFSSLR---- 666 (814)
Q Consensus 596 ~l~~~~~l~~lp~~~~~l~~L~~L~l~~-~----~~~l~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~l~~L~---- 666 (814)
++..+..+..+|.....+++|++|.+.. . ...+.+...+.+|+.+......... . ..+..++.|.
T Consensus 624 nl~~~~~l~~~~~i~~~L~~Lr~L~l~~s~~~~~~~~l~el~~Le~L~~ls~~~~s~~~--~----e~l~~~~~L~~~~~ 697 (889)
T KOG4658|consen 624 NLEVTGRLESIPGILLELQSLRVLRLPRSALSNDKLLLKELENLEHLENLSITISSVLL--L----EDLLGMTRLRSLLQ 697 (889)
T ss_pred ccccccccccccchhhhcccccEEEeeccccccchhhHHhhhcccchhhheeecchhHh--H----hhhhhhHHHHHHhH
Confidence 9998887777777777799999998876 2 1112223445666666665543311 0 1122333333
Q ss_pred EEEEecCCCCCccCCccccccCCCCCCCCCcceEEeccCCCCcccccc-----ccc-CCCCCeEEecCCCCCCccCCCCC
Q 035579 667 HLTIDGCDDDMVSFPPEDKRLGTALPLPASLTDLEIGRFPNLERLSSS-----IVD-LQNLTELCLRDCPKLKYFPEKGL 740 (814)
Q Consensus 667 ~L~l~~~~~~l~~i~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~-----~~~-l~~L~~L~l~~c~~l~~lp~~~l 740 (814)
.+.+.++ ...+.+... ..+.+|+.|.+.+|...+....+ ... ++++..+.+.+|..++.+....+
T Consensus 698 ~l~~~~~--~~~~~~~~~-------~~l~~L~~L~i~~~~~~e~~~~~~~~~~~~~~f~~l~~~~~~~~~~~r~l~~~~f 768 (889)
T KOG4658|consen 698 SLSIEGC--SKRTLISSL-------GSLGNLEELSILDCGISEIVIEWEESLIVLLCFPNLSKVSILNCHMLRDLTWLLF 768 (889)
T ss_pred hhhhccc--ccceeeccc-------ccccCcceEEEEcCCCchhhcccccccchhhhHHHHHHHHhhccccccccchhhc
Confidence 2222221 223333333 45778888888887654322111 111 55677777777777777666556
Q ss_pred cCCccEEeecCCchhhHhh
Q 035579 741 PSSLLRLSILSCPLIEEKC 759 (814)
Q Consensus 741 ~~~L~~L~i~~c~~l~~~~ 759 (814)
+++|+.|++.+|+.++...
T Consensus 769 ~~~L~~l~l~~~~~~e~~i 787 (889)
T KOG4658|consen 769 APHLTSLSLVSCRLLEDII 787 (889)
T ss_pred cCcccEEEEecccccccCC
Confidence 7888888888887665443
No 27
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=98.68 E-value=1.1e-08 Score=94.35 Aligned_cols=126 Identities=23% Similarity=0.338 Sum_probs=47.5
Q ss_pred CCCCcCcccEEEeeeCCCCCCccccCCCCCcccEEEEecCCCCCCCCCCCCCCccceeeecCCcCceeeCccccCCCCCC
Q 035579 114 LKPHKNLEQFGICGYGGTKFPTWLGDCSFSNLVTLKFKDCGVCTTLPSVGQLSSLKHLTVRGMSRVKSLGSEFYGNDSPI 193 (814)
Q Consensus 114 l~~~~~L~~L~l~~~~~~~~p~~~~~~~l~~L~~L~L~~~~~~~~l~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~ 193 (814)
+.++.+++.|+|+|+.++.+.. ++. .+.+|+.|++++|. ++.++.+..+++|+.|++++| .++.++..+..
T Consensus 15 ~~n~~~~~~L~L~~n~I~~Ie~-L~~-~l~~L~~L~Ls~N~-I~~l~~l~~L~~L~~L~L~~N-~I~~i~~~l~~----- 85 (175)
T PF14580_consen 15 YNNPVKLRELNLRGNQISTIEN-LGA-TLDKLEVLDLSNNQ-ITKLEGLPGLPRLKTLDLSNN-RISSISEGLDK----- 85 (175)
T ss_dssp ---------------------S---T-T-TT--EEE-TTS---S--TT----TT--EEE--SS----S-CHHHHH-----
T ss_pred cccccccccccccccccccccc-hhh-hhcCCCEEECCCCC-CccccCccChhhhhhcccCCC-CCCccccchHH-----
Confidence 3345567888888888777653 321 47788889988888 556777888888999999874 56666432221
Q ss_pred CCCCcceeeccccccccccccCCCCCCcccCCcccEEEEccCCCcccCCCC-------CCCcccceee
Q 035579 194 PFPCLETLRFENMQEWEDWIPLRSDQGVEGFPKLRELHIISCSKLQGTFPE-------HLPALEMLVI 254 (814)
Q Consensus 194 ~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~lp~-------~l~~L~~L~l 254 (814)
.+|+|++|++++ +++..+..... +..+++|++|++.+|+ +. ..+. .+|+|+.||-
T Consensus 86 ~lp~L~~L~L~~-N~I~~l~~l~~---L~~l~~L~~L~L~~NP-v~-~~~~YR~~vi~~lP~Lk~LD~ 147 (175)
T PF14580_consen 86 NLPNLQELYLSN-NKISDLNELEP---LSSLPKLRVLSLEGNP-VC-EKKNYRLFVIYKLPSLKVLDG 147 (175)
T ss_dssp H-TT--EEE-TT-S---SCCCCGG---GGG-TT--EEE-TT-G-GG-GSTTHHHHHHHH-TT-SEETT
T ss_pred hCCcCCEEECcC-CcCCChHHhHH---HHcCCCcceeeccCCc-cc-chhhHHHHHHHHcChhheeCC
Confidence 178899999987 66666655444 6789999999999999 65 3342 5678888875
No 28
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=98.64 E-value=1.3e-08 Score=93.98 Aligned_cols=127 Identities=23% Similarity=0.276 Sum_probs=44.3
Q ss_pred CCCCcceEeecccCCcccccccCC-CCCCccEEEecCCCCceecCCCCCCCCCcceEeeccccccccccccc-cCCCCcc
Q 035579 540 NNTSLETIGINFCENLKILPSGLH-NLRQLREITIQRCGNLVSFPEGGLPCAKLSELRIFQCERLEALPKGL-HNLTSLQ 617 (814)
Q Consensus 540 ~l~~L~~L~L~~n~~~~~~~~~~~-~l~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~~~~l~~lp~~~-~~l~~L~ 617 (814)
+...+++|+|.+|.+..+ ..++ .+.+|+.|++++| .++.++ ++..++.|++|++++| .++.++..+ ..+++|+
T Consensus 17 n~~~~~~L~L~~n~I~~I--e~L~~~l~~L~~L~Ls~N-~I~~l~-~l~~L~~L~~L~L~~N-~I~~i~~~l~~~lp~L~ 91 (175)
T PF14580_consen 17 NPVKLRELNLRGNQISTI--ENLGATLDKLEVLDLSNN-QITKLE-GLPGLPRLKTLDLSNN-RISSISEGLDKNLPNLQ 91 (175)
T ss_dssp ---------------------S--TT-TT--EEE-TTS---S--T-T----TT--EEE--SS----S-CHHHHHH-TT--
T ss_pred cccccccccccccccccc--cchhhhhcCCCEEECCCC-CCcccc-CccChhhhhhcccCCC-CCCccccchHHhCCcCC
Confidence 344556666666666543 2343 4566777777776 555554 4555667777777776 455554333 3467777
Q ss_pred eEEecC-ccCcc---ccCCCCCceeEEEecCCcchhhhhhhcccccCCCCcccEEEEec
Q 035579 618 ELTIGG-ALPSL---EEDGLPTNLHSLDIRGNMEIWKSMIERGRGFHRFSSLRHLTIDG 672 (814)
Q Consensus 618 ~L~l~~-~~~~l---~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~l~~L~~L~l~~ 672 (814)
+|++++ .+..+ .....+++|++|++.+|+....... ....+..+|+|+.||-..
T Consensus 92 ~L~L~~N~I~~l~~l~~L~~l~~L~~L~L~~NPv~~~~~Y-R~~vi~~lP~Lk~LD~~~ 149 (175)
T PF14580_consen 92 ELYLSNNKISDLNELEPLSSLPKLRVLSLEGNPVCEKKNY-RLFVIYKLPSLKVLDGQD 149 (175)
T ss_dssp EEE-TTS---SCCCCGGGGG-TT--EEE-TT-GGGGSTTH-HHHHHHH-TT-SEETTEE
T ss_pred EEECcCCcCCChHHhHHHHcCCCcceeeccCCcccchhhH-HHHHHHHcChhheeCCEE
Confidence 777776 44333 3334578899999999987654221 123567788888887665
No 29
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=98.61 E-value=5.8e-09 Score=105.27 Aligned_cols=186 Identities=15% Similarity=0.091 Sum_probs=107.8
Q ss_pred hhcCCCCcceEeecccCCccc--ccccCCCCCCccEEEecCCCCceecCC-CCCCCCCcceEeeccccccc-cccccccC
Q 035579 537 RLDNNTSLETIGINFCENLKI--LPSGLHNLRQLREITIQRCGNLVSFPE-GGLPCAKLSELRIFQCERLE-ALPKGLHN 612 (814)
Q Consensus 537 ~~~~l~~L~~L~L~~n~~~~~--~~~~~~~l~~L~~L~l~~~~~l~~~~~-~~~~l~~L~~L~l~~~~~l~-~lp~~~~~ 612 (814)
....+++++.|||+.|-+... +-.....+++|+.|+++.|...--... .-..+++|+.|.+++|.... .+......
T Consensus 141 ~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l~~lK~L~l~~CGls~k~V~~~~~~ 220 (505)
T KOG3207|consen 141 YSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLLSHLKQLVLNSCGLSWKDVQWILLT 220 (505)
T ss_pred hhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhhhhhhheEEeccCCCCHHHHHHHHHh
Confidence 345566666666666654432 222334566677777766632221111 11234567777777774321 12223346
Q ss_pred CCCcceEEecCc-cCcc--ccCCCCCceeEEEecCCcchhhhhhhcccccCCCCcccEEEEecCCCCCccCCccccccCC
Q 035579 613 LTSLQELTIGGA-LPSL--EEDGLPTNLHSLDIRGNMEIWKSMIERGRGFHRFSSLRHLTIDGCDDDMVSFPPEDKRLGT 689 (814)
Q Consensus 613 l~~L~~L~l~~~-~~~l--~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~l~~i~~~~~~~~~ 689 (814)
+|+|+.|++.++ .... .....+..|++|+|++|+.+..... .....++.|+.|.++.| .+.++..-..+...
T Consensus 221 fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li~~~~~---~~~~~l~~L~~Lnls~t--gi~si~~~d~~s~~ 295 (505)
T KOG3207|consen 221 FPSLEVLYLEANEIILIKATSTKILQTLQELDLSNNNLIDFDQG---YKVGTLPGLNQLNLSST--GIASIAEPDVESLD 295 (505)
T ss_pred CCcHHHhhhhcccccceecchhhhhhHHhhccccCCcccccccc---cccccccchhhhhcccc--CcchhcCCCccchh
Confidence 677777777662 1111 1133467888899998887765432 35678888888998887 44443222211111
Q ss_pred CCCCCCCcceEEeccCCCCccccc--ccccCCCCCeEEecC
Q 035579 690 ALPLPASLTDLEIGRFPNLERLSS--SIVDLQNLTELCLRD 728 (814)
Q Consensus 690 ~~~~~~~L~~L~l~~~~~l~~l~~--~~~~l~~L~~L~l~~ 728 (814)
....+++|+.|++.. |++...+. .+..+++|+.|.+..
T Consensus 296 kt~~f~kL~~L~i~~-N~I~~w~sl~~l~~l~nlk~l~~~~ 335 (505)
T KOG3207|consen 296 KTHTFPKLEYLNISE-NNIRDWRSLNHLRTLENLKHLRITL 335 (505)
T ss_pred hhcccccceeeeccc-Cccccccccchhhccchhhhhhccc
Confidence 224589999999999 77776664 566777888887655
No 30
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=98.58 E-value=2.3e-09 Score=111.44 Aligned_cols=190 Identities=20% Similarity=0.250 Sum_probs=129.9
Q ss_pred ccEEEEeccCCcchhhHhhcCCCCcceEeecccCCcccccccCCCCCCccEEEecCCCCceecCCCCCCCCCcceEeecc
Q 035579 520 LESLSVYKCSKLESIAERLDNNTSLETIGINFCENLKILPSGLHNLRQLREITIQRCGNLVSFPEGGLPCAKLSELRIFQ 599 (814)
Q Consensus 520 L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~ 599 (814)
-...+++.| ...++|..++.+..|+.+.+..|.+. .+|..+.++..|+.++++.| .+..+|..+..+ -|+.|-+++
T Consensus 77 t~~aDlsrN-R~~elp~~~~~f~~Le~liLy~n~~r-~ip~~i~~L~~lt~l~ls~N-qlS~lp~~lC~l-pLkvli~sN 152 (722)
T KOG0532|consen 77 TVFADLSRN-RFSELPEEACAFVSLESLILYHNCIR-TIPEAICNLEALTFLDLSSN-QLSHLPDGLCDL-PLKVLIVSN 152 (722)
T ss_pred hhhhhcccc-ccccCchHHHHHHHHHHHHHHhccce-ecchhhhhhhHHHHhhhccc-hhhcCChhhhcC-cceeEEEec
Confidence 344566664 45567777888888888888887665 44567888888889999887 677788877777 488888887
Q ss_pred ccccccccccccCCCCcceEEecCccCccccCCCCCceeEEEecCCcchhhhhhhcccccCCCCcccEEEEecCCCCCcc
Q 035579 600 CERLEALPKGLHNLTSLQELTIGGALPSLEEDGLPTNLHSLDIRGNMEIWKSMIERGRGFHRFSSLRHLTIDGCDDDMVS 679 (814)
Q Consensus 600 ~~~l~~lp~~~~~l~~L~~L~l~~~~~~l~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~l~~ 679 (814)
| +++.+|..++.++.|..||. +.|.+.... ..+..+.+|+.|.+..| .+..
T Consensus 153 N-kl~~lp~~ig~~~tl~~ld~---------------------s~nei~slp-----sql~~l~slr~l~vrRn--~l~~ 203 (722)
T KOG0532|consen 153 N-KLTSLPEEIGLLPTLAHLDV---------------------SKNEIQSLP-----SQLGYLTSLRDLNVRRN--HLED 203 (722)
T ss_pred C-ccccCCcccccchhHHHhhh---------------------hhhhhhhch-----HHhhhHHHHHHHHHhhh--hhhh
Confidence 7 78888877765555555554 444443332 23566677777777766 6777
Q ss_pred CCccccccCCCCCCCCCcceEEeccCCCCcccccccccCCCCCeEEecCCCCCCccCCC----CCcCCccEEeecCC
Q 035579 680 FPPEDKRLGTALPLPASLTDLEIGRFPNLERLSSSIVDLQNLTELCLRDCPKLKYFPEK----GLPSSLLRLSILSC 752 (814)
Q Consensus 680 i~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~l~~L~~L~l~~c~~l~~lp~~----~l~~~L~~L~i~~c 752 (814)
+|.+.. --.|..||++. |++..||..+.+|+.|++|.|.++ =|++-|+. +.-.-.++|++.-|
T Consensus 204 lp~El~--------~LpLi~lDfSc-Nkis~iPv~fr~m~~Lq~l~LenN-PLqSPPAqIC~kGkVHIFKyL~~qA~ 270 (722)
T KOG0532|consen 204 LPEELC--------SLPLIRLDFSC-NKISYLPVDFRKMRHLQVLQLENN-PLQSPPAQICEKGKVHIFKYLSTQAC 270 (722)
T ss_pred CCHHHh--------CCceeeeeccc-CceeecchhhhhhhhheeeeeccC-CCCCChHHHHhccceeeeeeecchhc
Confidence 777662 34577777776 778888887788888888888764 36665542 22334566666666
No 31
>PRK15386 type III secretion protein GogB; Provisional
Probab=98.53 E-value=9.8e-07 Score=91.59 Aligned_cols=165 Identities=24% Similarity=0.424 Sum_probs=89.3
Q ss_pred hcCCCCcceEeecccCCcccccccCCCCCCccEEEecCCCCceecCCCCCCCCCcceEeeccccccccccccccCCCCcc
Q 035579 538 LDNNTSLETIGINFCENLKILPSGLHNLRQLREITIQRCGNLVSFPEGGLPCAKLSELRIFQCERLEALPKGLHNLTSLQ 617 (814)
Q Consensus 538 ~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~~~~l~~lp~~~~~l~~L~ 617 (814)
+..+.+++.|++++|.+. .+|. -.++|++|.+++|..+..+|..+. ++|++|++++|..+..+|. +|+
T Consensus 48 ~~~~~~l~~L~Is~c~L~-sLP~---LP~sLtsL~Lsnc~nLtsLP~~LP--~nLe~L~Ls~Cs~L~sLP~------sLe 115 (426)
T PRK15386 48 IEEARASGRLYIKDCDIE-SLPV---LPNELTEITIENCNNLTTLPGSIP--EGLEKLTVCHCPEISGLPE------SVR 115 (426)
T ss_pred HHHhcCCCEEEeCCCCCc-ccCC---CCCCCcEEEccCCCCcccCCchhh--hhhhheEccCccccccccc------ccc
Confidence 444577777777777333 3341 123578888887777777775442 4778888887766655552 344
Q ss_pred eEEecC-ccCccccCCCCCceeEEEecCCcchhhhhhhcccccCCCCcccEEEEecCCCC-CccCCccccccCCCCCCCC
Q 035579 618 ELTIGG-ALPSLEEDGLPTNLHSLDIRGNMEIWKSMIERGRGFHRFSSLRHLTIDGCDDD-MVSFPPEDKRLGTALPLPA 695 (814)
Q Consensus 618 ~L~l~~-~~~~l~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~-l~~i~~~~~~~~~~~~~~~ 695 (814)
.|++.+ ....++ ..+++ |+.|.+.+++.. ...+|. ..++
T Consensus 116 ~L~L~~n~~~~L~--~LPss----------------------------Lk~L~I~~~n~~~~~~lp~---------~LPs 156 (426)
T PRK15386 116 SLEIKGSATDSIK--NVPNG----------------------------LTSLSINSYNPENQARIDN---------LISP 156 (426)
T ss_pred eEEeCCCCCcccc--cCcch----------------------------Hhheecccccccccccccc---------ccCC
Confidence 444443 211111 12233 444444322111 111121 2356
Q ss_pred CcceEEeccCCCCcccccccccCCCCCeEEecCCCC-CCccCCCCCcCCccEEeecCCchhhH
Q 035579 696 SLTDLEIGRFPNLERLSSSIVDLQNLTELCLRDCPK-LKYFPEKGLPSSLLRLSILSCPLIEE 757 (814)
Q Consensus 696 ~L~~L~l~~~~~l~~l~~~~~~l~~L~~L~l~~c~~-l~~lp~~~l~~~L~~L~i~~c~~l~~ 757 (814)
+|++|++++|..+ .+|..+. .+|+.|+++.+.. -..++...+|+++ .|++.+|..+..
T Consensus 157 SLk~L~Is~c~~i-~LP~~LP--~SLk~L~ls~n~~~sLeI~~~sLP~nl-~L~f~n~lkL~~ 215 (426)
T PRK15386 157 SLKTLSLTGCSNI-ILPEKLP--ESLQSITLHIEQKTTWNISFEGFPDGL-DIDLQNSVLLSP 215 (426)
T ss_pred cccEEEecCCCcc-cCccccc--ccCcEEEecccccccccCccccccccc-EechhhhcccCH
Confidence 7777777776544 3443333 5788888876421 1234444567777 888888765543
No 32
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=98.52 E-value=1.1e-08 Score=103.36 Aligned_cols=167 Identities=18% Similarity=0.150 Sum_probs=84.9
Q ss_pred cccccCCCceEEEccccCCCChhhhHHhhcccCCCcceeEEEEecCCCCCCCcchhhHHhhhcCCCCCcCcccEEEeeeC
Q 035579 50 LKLLTYLRGTLHISKLENVTDIGDAKEAQLDVKENLRELLLQWTRSTDGSSSWKAETEMGVLDMLKPHKNLEQFGICGYG 129 (814)
Q Consensus 50 l~~l~~L~~~L~l~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~ 129 (814)
...+++++ .|+++.. -.+ -.........++++|+.|+++.|.... +|.+.... .+++|+.|.+++|+
T Consensus 142 ~k~~~~v~-~LdLS~N-L~~-nw~~v~~i~eqLp~Le~LNls~Nrl~~---~~~s~~~~-------~l~~lK~L~l~~CG 208 (505)
T KOG3207|consen 142 SKILPNVR-DLDLSRN-LFH-NWFPVLKIAEQLPSLENLNLSSNRLSN---FISSNTTL-------LLSHLKQLVLNSCG 208 (505)
T ss_pred hhhCCcce-eecchhh-hHH-hHHHHHHHHHhcccchhcccccccccC---Cccccchh-------hhhhhheEEeccCC
Confidence 44555555 5555421 111 122333456667777777777665432 22221111 35667777777765
Q ss_pred CCCC-CccccCCCCCcccEEEEecCCCCCC-CCCCCCCCccceeeecCCcCceeeCccccCCCCCCCCCCcceeeccccc
Q 035579 130 GTKF-PTWLGDCSFSNLVTLKFKDCGVCTT-LPSVGQLSSLKHLTVRGMSRVKSLGSEFYGNDSPIPFPCLETLRFENMQ 207 (814)
Q Consensus 130 ~~~~-p~~~~~~~l~~L~~L~L~~~~~~~~-l~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~ 207 (814)
++.= -.|+.. .|++|+.|+|..|..+.. .-...-+..|+.|||++|+.+....... ...|+.|+.|+++. +
T Consensus 209 ls~k~V~~~~~-~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li~~~~~~~-----~~~l~~L~~Lnls~-t 281 (505)
T KOG3207|consen 209 LSWKDVQWILL-TFPSLEVLYLEANEIILIKATSTKILQTLQELDLSNNNLIDFDQGYK-----VGTLPGLNQLNLSS-T 281 (505)
T ss_pred CCHHHHHHHHH-hCCcHHHhhhhcccccceecchhhhhhHHhhccccCCcccccccccc-----cccccchhhhhccc-c
Confidence 4410 011111 567777777777642221 1134456667777777765443322111 22377777777766 3
Q ss_pred cccccccCCCC--CCcccCCcccEEEEccCC
Q 035579 208 EWEDWIPLRSD--QGVEGFPKLRELHIISCS 236 (814)
Q Consensus 208 ~l~~~~~~~~~--~~~~~l~~L~~L~l~~c~ 236 (814)
.+..+...+.. .-...+++|++|++..|+
T Consensus 282 gi~si~~~d~~s~~kt~~f~kL~~L~i~~N~ 312 (505)
T KOG3207|consen 282 GIASIAEPDVESLDKTHTFPKLEYLNISENN 312 (505)
T ss_pred CcchhcCCCccchhhhcccccceeeecccCc
Confidence 34443322210 002357888888888887
No 33
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=98.50 E-value=1.8e-08 Score=96.51 Aligned_cols=40 Identities=15% Similarity=0.101 Sum_probs=21.6
Q ss_pred hHhhcCCCCcceEeecccCCcccccccCCCCCCccEEEecC
Q 035579 535 AERLDNNTSLETIGINFCENLKILPSGLHNLRQLREITIQR 575 (814)
Q Consensus 535 ~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~ 575 (814)
|-.+..+.+|+.+.++.|.-..+. .-...-|.|+++.+..
T Consensus 207 ~f~l~~f~~l~~~~~s~~~~~~i~-~~~~~kptl~t~~v~~ 246 (490)
T KOG1259|consen 207 SFNLNAFRNLKTLKFSALSTENIV-DIELLKPTLQTICVHN 246 (490)
T ss_pred ccchHHhhhhheeeeeccchhhee-ceeecCchhheeeeec
Confidence 434555677777777777544321 1112235666666654
No 34
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=98.45 E-value=1.6e-07 Score=102.26 Aligned_cols=178 Identities=24% Similarity=0.304 Sum_probs=127.9
Q ss_pred hcCCCCcceEeecccCCcccccccCCCCC-CccEEEecCCCCceecCCCCCCCCCcceEeeccccccccccccccCCCCc
Q 035579 538 LDNNTSLETIGINFCENLKILPSGLHNLR-QLREITIQRCGNLVSFPEGGLPCAKLSELRIFQCERLEALPKGLHNLTSL 616 (814)
Q Consensus 538 ~~~l~~L~~L~L~~n~~~~~~~~~~~~l~-~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~~~~l~~lp~~~~~l~~L 616 (814)
+...+.++.+++.+|.+.... ....... +|+.|++++| .+..+|..+..++.|+.|++++| .+..+|...+..+.|
T Consensus 112 ~~~~~~l~~L~l~~n~i~~i~-~~~~~~~~nL~~L~l~~N-~i~~l~~~~~~l~~L~~L~l~~N-~l~~l~~~~~~~~~L 188 (394)
T COG4886 112 LLELTNLTSLDLDNNNITDIP-PLIGLLKSNLKELDLSDN-KIESLPSPLRNLPNLKNLDLSFN-DLSDLPKLLSNLSNL 188 (394)
T ss_pred hhcccceeEEecCCcccccCc-cccccchhhccccccccc-chhhhhhhhhccccccccccCCc-hhhhhhhhhhhhhhh
Confidence 444467778888777666543 3344453 7888888887 66777666777888888888888 677777665577888
Q ss_pred ceEEecC-ccCccccC-CCCCceeEEEecCCcchhhhhhhcccccCCCCcccEEEEecCCCCCccCCccccccCCCCCCC
Q 035579 617 QELTIGG-ALPSLEED-GLPTNLHSLDIRGNMEIWKSMIERGRGFHRFSSLRHLTIDGCDDDMVSFPPEDKRLGTALPLP 694 (814)
Q Consensus 617 ~~L~l~~-~~~~l~~~-~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~l~~i~~~~~~~~~~~~~~ 694 (814)
+.|++++ .+..++.. ..+..|+++.+++|...... ..+..+.++..+.+.+| .+..++... ..+
T Consensus 189 ~~L~ls~N~i~~l~~~~~~~~~L~~l~~~~N~~~~~~-----~~~~~~~~l~~l~l~~n--~~~~~~~~~-------~~l 254 (394)
T COG4886 189 NNLDLSGNKISDLPPEIELLSALEELDLSNNSIIELL-----SSLSNLKNLSGLELSNN--KLEDLPESI-------GNL 254 (394)
T ss_pred hheeccCCccccCchhhhhhhhhhhhhhcCCcceecc-----hhhhhcccccccccCCc--eeeeccchh-------ccc
Confidence 8888888 77777764 45566889999988633332 34677778888887776 555545544 467
Q ss_pred CCcceEEeccCCCCcccccccccCCCCCeEEecCCCCCCcc
Q 035579 695 ASLTDLEIGRFPNLERLSSSIVDLQNLTELCLRDCPKLKYF 735 (814)
Q Consensus 695 ~~L~~L~l~~~~~l~~l~~~~~~l~~L~~L~l~~c~~l~~l 735 (814)
++++.|++++ +.+..++. +..+.+|+.|++++. .+..+
T Consensus 255 ~~l~~L~~s~-n~i~~i~~-~~~~~~l~~L~~s~n-~~~~~ 292 (394)
T COG4886 255 SNLETLDLSN-NQISSISS-LGSLTNLRELDLSGN-SLSNA 292 (394)
T ss_pred cccceecccc-cccccccc-ccccCccCEEeccCc-ccccc
Confidence 7899999998 78888885 888889999999884 44443
No 35
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=98.45 E-value=7.5e-08 Score=92.27 Aligned_cols=110 Identities=14% Similarity=0.111 Sum_probs=55.6
Q ss_pred CCCccEEEecCCCCceecCCCCCCCCCcceEeeccccccccccccccCCCCcceEEecC-ccCccccCCCCCceeEEEec
Q 035579 565 LRQLREITIQRCGNLVSFPEGGLPCAKLSELRIFQCERLEALPKGLHNLTSLQELTIGG-ALPSLEEDGLPTNLHSLDIR 643 (814)
Q Consensus 565 l~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~~~~l~~lp~~~~~l~~L~~L~l~~-~~~~l~~~~~~~~L~~L~l~ 643 (814)
.|+++.|++++| .+..+.. +..+++|+.||+++| .+..+..+-..+.+.+.|.+++ .++++...+.+.+|..||++
T Consensus 306 ~Pkir~L~lS~N-~i~~v~n-La~L~~L~~LDLS~N-~Ls~~~Gwh~KLGNIKtL~La~N~iE~LSGL~KLYSLvnLDl~ 382 (490)
T KOG1259|consen 306 APKLRRLILSQN-RIRTVQN-LAELPQLQLLDLSGN-LLAECVGWHLKLGNIKTLKLAQNKIETLSGLRKLYSLVNLDLS 382 (490)
T ss_pred ccceeEEecccc-ceeeehh-hhhcccceEeecccc-hhHhhhhhHhhhcCEeeeehhhhhHhhhhhhHhhhhheecccc
Confidence 444444444444 2232322 333444555555444 3444434444444555555554 44444444445566666666
Q ss_pred CCcchhhhhhhcccccCCCCcccEEEEecCCCCCccCCc
Q 035579 644 GNMEIWKSMIERGRGFHRFSSLRHLTIDGCDDDMVSFPP 682 (814)
Q Consensus 644 ~n~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~l~~i~~ 682 (814)
+|++-...-. ..++++|.|+.+.+.+| .+..+++
T Consensus 383 ~N~Ie~ldeV---~~IG~LPCLE~l~L~~N--Pl~~~vd 416 (490)
T KOG1259|consen 383 SNQIEELDEV---NHIGNLPCLETLRLTGN--PLAGSVD 416 (490)
T ss_pred ccchhhHHHh---cccccccHHHHHhhcCC--Cccccch
Confidence 6654433221 45677777777777775 5555554
No 36
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=98.39 E-value=2.5e-07 Score=100.71 Aligned_cols=189 Identities=24% Similarity=0.294 Sum_probs=149.2
Q ss_pred eEeecccCCcccccccCCCCCCccEEEecCCCCceecCCCCCCCC-CcceEeeccccccccccccccCCCCcceEEecC-
Q 035579 546 TIGINFCENLKILPSGLHNLRQLREITIQRCGNLVSFPEGGLPCA-KLSELRIFQCERLEALPKGLHNLTSLQELTIGG- 623 (814)
Q Consensus 546 ~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~l~-~L~~L~l~~~~~l~~lp~~~~~l~~L~~L~l~~- 623 (814)
.+....+...... ..+..++.++.|++.++ .+..++....... +|+.|++++| .+..+|..+..+++|+.|++++
T Consensus 97 ~l~~~~~~~~~~~-~~~~~~~~l~~L~l~~n-~i~~i~~~~~~~~~nL~~L~l~~N-~i~~l~~~~~~l~~L~~L~l~~N 173 (394)
T COG4886 97 SLDLNLNRLRSNI-SELLELTNLTSLDLDNN-NITDIPPLIGLLKSNLKELDLSDN-KIESLPSPLRNLPNLKNLDLSFN 173 (394)
T ss_pred eeeccccccccCc-hhhhcccceeEEecCCc-ccccCccccccchhhccccccccc-chhhhhhhhhccccccccccCCc
Confidence 4666666553332 33555688999999987 7788887777774 9999999998 7888877889999999999999
Q ss_pred ccCccccCC-CCCceeEEEecCCcchhhhhhhcccccCCCCcccEEEEecCCCCCccCCccccccCCCCCCCCCcceEEe
Q 035579 624 ALPSLEEDG-LPTNLHSLDIRGNMEIWKSMIERGRGFHRFSSLRHLTIDGCDDDMVSFPPEDKRLGTALPLPASLTDLEI 702 (814)
Q Consensus 624 ~~~~l~~~~-~~~~L~~L~l~~n~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~l~~i~~~~~~~~~~~~~~~~L~~L~l 702 (814)
.+..++... ..++|+.|++++|....... .......|+++.+++| ....++... ..+.++..+.+
T Consensus 174 ~l~~l~~~~~~~~~L~~L~ls~N~i~~l~~-----~~~~~~~L~~l~~~~N--~~~~~~~~~-------~~~~~l~~l~l 239 (394)
T COG4886 174 DLSDLPKLLSNLSNLNNLDLSGNKISDLPP-----EIELLSALEELDLSNN--SIIELLSSL-------SNLKNLSGLEL 239 (394)
T ss_pred hhhhhhhhhhhhhhhhheeccCCccccCch-----hhhhhhhhhhhhhcCC--cceecchhh-------hhccccccccc
Confidence 888887754 78999999999998877643 2235556999999996 345555544 46788888887
Q ss_pred ccCCCCcccccccccCCCCCeEEecCCCCCCccCCCCCcCCccEEeecCCc
Q 035579 703 GRFPNLERLSSSIVDLQNLTELCLRDCPKLKYFPEKGLPSSLLRLSILSCP 753 (814)
Q Consensus 703 ~~~~~l~~l~~~~~~l~~L~~L~l~~c~~l~~lp~~~l~~~L~~L~i~~c~ 753 (814)
.+ +++..++..+..+++++.|++++ +.+.+++..+-..+++.+++.+..
T Consensus 240 ~~-n~~~~~~~~~~~l~~l~~L~~s~-n~i~~i~~~~~~~~l~~L~~s~n~ 288 (394)
T COG4886 240 SN-NKLEDLPESIGNLSNLETLDLSN-NQISSISSLGSLTNLRELDLSGNS 288 (394)
T ss_pred CC-ceeeeccchhccccccceecccc-ccccccccccccCccCEEeccCcc
Confidence 77 78888788889999999999999 589999884447899999999854
No 37
>PRK15386 type III secretion protein GogB; Provisional
Probab=98.29 E-value=3.6e-06 Score=87.44 Aligned_cols=73 Identities=23% Similarity=0.497 Sum_probs=40.2
Q ss_pred hcCCCCCeEEEecCCCcccchhhHHHHHHHHhhhccccccEEEeeccCCccccccccCCCCCcceEeeecCCCCcccCCC
Q 035579 329 QDICSLRRLTIRSCPKLQSLVAEEEKDQQQQLCELSCRLEYLILSCCEGLVKLPQSSLSLCSLREIGIYKCSSLVSFPEV 408 (814)
Q Consensus 329 ~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~L~~~~~l~~~~~~ 408 (814)
..+.+++.|++++| .++.+|. +|++|++|.+++|..+..+|..+ .++|++|++++|..+..+|
T Consensus 49 ~~~~~l~~L~Is~c-~L~sLP~------------LP~sLtsL~Lsnc~nLtsLP~~L--P~nLe~L~Ls~Cs~L~sLP-- 111 (426)
T PRK15386 49 EEARASGRLYIKDC-DIESLPV------------LPNELTEITIENCNNLTTLPGSI--PEGLEKLTVCHCPEISGLP-- 111 (426)
T ss_pred HHhcCCCEEEeCCC-CCcccCC------------CCCCCcEEEccCCCCcccCCchh--hhhhhheEccCcccccccc--
Confidence 34566666677666 5555542 23556666666666555555433 2456666666655444332
Q ss_pred CCCCCCcEEEecc
Q 035579 409 ALPSKLEKIHIGA 421 (814)
Q Consensus 409 ~~~~~L~~L~l~~ 421 (814)
++|+.|++..
T Consensus 112 ---~sLe~L~L~~ 121 (426)
T PRK15386 112 ---ESVRSLEIKG 121 (426)
T ss_pred ---cccceEEeCC
Confidence 3455555544
No 38
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=98.26 E-value=2.7e-08 Score=103.68 Aligned_cols=170 Identities=22% Similarity=0.289 Sum_probs=127.4
Q ss_pred CCCccEEEecCCCCceecCCCCCCCCCcceEeeccccccccccccccCCCCcceEEecC-ccCccccCCCCCceeEEEec
Q 035579 565 LRQLREITIQRCGNLVSFPEGGLPCAKLSELRIFQCERLEALPKGLHNLTSLQELTIGG-ALPSLEEDGLPTNLHSLDIR 643 (814)
Q Consensus 565 l~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~~~~l~~lp~~~~~l~~L~~L~l~~-~~~~l~~~~~~~~L~~L~l~ 643 (814)
++.-...+++.| .+..+|..+..+..|+.+.+..| .+..+|..+.++..|..+|++. .+..+|..-+.--|+.|-++
T Consensus 74 ltdt~~aDlsrN-R~~elp~~~~~f~~Le~liLy~n-~~r~ip~~i~~L~~lt~l~ls~NqlS~lp~~lC~lpLkvli~s 151 (722)
T KOG0532|consen 74 LTDTVFADLSRN-RFSELPEEACAFVSLESLILYHN-CIRTIPEAICNLEALTFLDLSSNQLSHLPDGLCDLPLKVLIVS 151 (722)
T ss_pred ccchhhhhcccc-ccccCchHHHHHHHHHHHHHHhc-cceecchhhhhhhHHHHhhhccchhhcCChhhhcCcceeEEEe
Confidence 333345556665 45566666666666666666666 5666666666666777777766 56665553334568889999
Q ss_pred CCcchhhhhhhcccccCCCCcccEEEEecCCCCCccCCccccccCCCCCCCCCcceEEeccCCCCcccccccccCCCCCe
Q 035579 644 GNMEIWKSMIERGRGFHRFSSLRHLTIDGCDDDMVSFPPEDKRLGTALPLPASLTDLEIGRFPNLERLSSSIVDLQNLTE 723 (814)
Q Consensus 644 ~n~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~l~~i~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~l~~L~~ 723 (814)
+|++...+ ..++..+.|..|+.+.| .+.++|... ..+.+|+.|.++. |.+..+|+.+. .-.|..
T Consensus 152 NNkl~~lp-----~~ig~~~tl~~ld~s~n--ei~slpsql-------~~l~slr~l~vrR-n~l~~lp~El~-~LpLi~ 215 (722)
T KOG0532|consen 152 NNKLTSLP-----EEIGLLPTLAHLDVSKN--EIQSLPSQL-------GYLTSLRDLNVRR-NHLEDLPEELC-SLPLIR 215 (722)
T ss_pred cCccccCC-----cccccchhHHHhhhhhh--hhhhchHHh-------hhHHHHHHHHHhh-hhhhhCCHHHh-CCceee
Confidence 98876654 45668899999999998 999999988 4789999999999 89999999887 446999
Q ss_pred EEecCCCCCCccCCCCC-cCCccEEeecCCc
Q 035579 724 LCLRDCPKLKYFPEKGL-PSSLLRLSILSCP 753 (814)
Q Consensus 724 L~l~~c~~l~~lp~~~l-~~~L~~L~i~~c~ 753 (814)
||++. +++.+||...- ++.|++|-+.++|
T Consensus 216 lDfSc-Nkis~iPv~fr~m~~Lq~l~LenNP 245 (722)
T KOG0532|consen 216 LDFSC-NKISYLPVDFRKMRHLQVLQLENNP 245 (722)
T ss_pred eeccc-CceeecchhhhhhhhheeeeeccCC
Confidence 99976 89999998532 7899999999987
No 39
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.22 E-value=4.3e-08 Score=93.94 Aligned_cols=152 Identities=17% Similarity=0.262 Sum_probs=82.5
Q ss_pred cccEEEEeccCCcch-hhHhhcCCCCcceEeecccCCcccccccCCCCCCccEEEecCCCCceecCC--CCCCCCCcceE
Q 035579 519 TLESLSVYKCSKLES-IAERLDNNTSLETIGINFCENLKILPSGLHNLRQLREITIQRCGNLVSFPE--GGLPCAKLSEL 595 (814)
Q Consensus 519 ~L~~L~l~~~~~~~~-~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~--~~~~l~~L~~L 595 (814)
.++.+|+++...... +-..+..+.+|+.|.+.++.....+...+..-.+|+.|+++.|..+++... -+.+|+.|..|
T Consensus 186 Rlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~L 265 (419)
T KOG2120|consen 186 RLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDEL 265 (419)
T ss_pred hhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHhhc
Confidence 466666666444322 344566677777777777777766666677777788888877766654432 24567777777
Q ss_pred eeccccccccccc-ccc-CCCCcceEEecC---c--cCcccc-CCCCCceeEEEecCCcchhhhhhhcccccCCCCcccE
Q 035579 596 RIFQCERLEALPK-GLH-NLTSLQELTIGG---A--LPSLEE-DGLPTNLHSLDIRGNMEIWKSMIERGRGFHRFSSLRH 667 (814)
Q Consensus 596 ~l~~~~~l~~lp~-~~~-~l~~L~~L~l~~---~--~~~l~~-~~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~l~~L~~ 667 (814)
+++.|...+.... .+. --++|+.|+++| + ...+.. ...+|+|.+||+++|..++.... ..|..++.|++
T Consensus 266 NlsWc~l~~~~Vtv~V~hise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~~~---~~~~kf~~L~~ 342 (419)
T KOG2120|consen 266 NLSWCFLFTEKVTVAVAHISETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKNDCF---QEFFKFNYLQH 342 (419)
T ss_pred CchHhhccchhhhHHHhhhchhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccCchHH---HHHHhcchhee
Confidence 7777754333211 111 113555555655 1 111111 12245555555555544433222 23445555555
Q ss_pred EEEecC
Q 035579 668 LTIDGC 673 (814)
Q Consensus 668 L~l~~~ 673 (814)
|.++.|
T Consensus 343 lSlsRC 348 (419)
T KOG2120|consen 343 LSLSRC 348 (419)
T ss_pred eehhhh
Confidence 555554
No 40
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.18 E-value=1.1e-07 Score=91.18 Aligned_cols=33 Identities=15% Similarity=0.287 Sum_probs=13.1
Q ss_pred EEEcCCCCcchhccchhhhhhcCCCCCeEEEec
Q 035579 309 LKINDMKEQTYMWKSHNELLQDICSLRRLTIRS 341 (814)
Q Consensus 309 L~~~~l~~~~~~~~~~~~~~~~l~~L~~L~l~~ 341 (814)
|+.+|+++-.+........+..+.+|+.|++.+
T Consensus 187 lq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg 219 (419)
T KOG2120|consen 187 LQHLDLSNSVITVSTLHGILSQCSKLKNLSLEG 219 (419)
T ss_pred hHHhhcchhheeHHHHHHHHHHHHhhhhccccc
Confidence 344444433332222333334444444444444
No 41
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=98.12 E-value=4.5e-07 Score=89.44 Aligned_cols=189 Identities=18% Similarity=0.194 Sum_probs=109.5
Q ss_pred HhhcCCCCcceEeecccCCccccc----ccCCCCCCccEEEecCCCCceecC--------------CCCCCCCCcceEee
Q 035579 536 ERLDNNTSLETIGINFCENLKILP----SGLHNLRQLREITIQRCGNLVSFP--------------EGGLPCAKLSELRI 597 (814)
Q Consensus 536 ~~~~~l~~L~~L~L~~n~~~~~~~----~~~~~l~~L~~L~l~~~~~l~~~~--------------~~~~~l~~L~~L~l 597 (814)
..+..++.|++++||+|-+...-+ .-+.++..|++|+|.+|. +.... ..+..-+.|+++..
T Consensus 86 ~aL~~~~~L~~ldLSDNA~G~~g~~~l~~ll~s~~~L~eL~L~N~G-lg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~ 164 (382)
T KOG1909|consen 86 KALLGCPKLQKLDLSDNAFGPKGIRGLEELLSSCTDLEELYLNNCG-LGPEAGGRLGRALFELAVNKKAASKPKLRVFIC 164 (382)
T ss_pred HHHhcCCceeEeeccccccCccchHHHHHHHHhccCHHHHhhhcCC-CChhHHHHHHHHHHHHHHHhccCCCcceEEEEe
Confidence 345555666667776665543222 223456677777777762 22111 11233467888887
Q ss_pred ccccccccccc-----cccCCCCcceEEecC-ccCc--c---c-cCCCCCceeEEEecCCcchhhhhhhcccccCCCCcc
Q 035579 598 FQCERLEALPK-----GLHNLTSLQELTIGG-ALPS--L---E-EDGLPTNLHSLDIRGNMEIWKSMIERGRGFHRFSSL 665 (814)
Q Consensus 598 ~~~~~l~~lp~-----~~~~l~~L~~L~l~~-~~~~--l---~-~~~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~l~~L 665 (814)
++| .+..-+. .+...+.|+.+.+.. +|.. + . ....+++|+.|++.+|.............++.|++|
T Consensus 165 ~rN-rlen~ga~~~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L 243 (382)
T KOG1909|consen 165 GRN-RLENGGATALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHL 243 (382)
T ss_pred ecc-ccccccHHHHHHHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhcccchh
Confidence 777 4444332 455667778777766 2221 1 1 133478888888888877665444334568888889
Q ss_pred cEEEEecCCCCCccCCcc-ccccCCCCCCCCCcceEEeccCCCCcc-----cccccccCCCCCeEEecCCCCC
Q 035579 666 RHLTIDGCDDDMVSFPPE-DKRLGTALPLPASLTDLEIGRFPNLER-----LSSSIVDLQNLTELCLRDCPKL 732 (814)
Q Consensus 666 ~~L~l~~~~~~l~~i~~~-~~~~~~~~~~~~~L~~L~l~~~~~l~~-----l~~~~~~l~~L~~L~l~~c~~l 732 (814)
++|++++| .++.=-.. ..+.. ....|+|+.|.+.+ |.++. +...+...+.|+.|++++| .+
T Consensus 244 ~El~l~dc--ll~~~Ga~a~~~al--~~~~p~L~vl~l~g-NeIt~da~~~la~~~~ek~dL~kLnLngN-~l 310 (382)
T KOG1909|consen 244 RELNLGDC--LLENEGAIAFVDAL--KESAPSLEVLELAG-NEITRDAALALAACMAEKPDLEKLNLNGN-RL 310 (382)
T ss_pred eeeccccc--ccccccHHHHHHHH--hccCCCCceeccCc-chhHHHHHHHHHHHHhcchhhHHhcCCcc-cc
Confidence 99999887 33221100 00000 02367888888888 55552 2224455788888888885 44
No 42
>PLN03150 hypothetical protein; Provisional
Probab=98.11 E-value=3.2e-06 Score=96.32 Aligned_cols=93 Identities=15% Similarity=0.111 Sum_probs=78.5
Q ss_pred cccEEEEeccCCcchhhHhhcCCCCcceEeecccCCcccccccCCCCCCccEEEecCCCCceecCCCCCCCCCcceEeec
Q 035579 519 TLESLSVYKCSKLESIAERLDNNTSLETIGINFCENLKILPSGLHNLRQLREITIQRCGNLVSFPEGGLPCAKLSELRIF 598 (814)
Q Consensus 519 ~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~ 598 (814)
.++.|+|++|...+.+|..++.+++|+.|+|++|.+.+.+|..++.+++|+.|++++|.....+|..+..+++|+.|+++
T Consensus 419 ~v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls 498 (623)
T PLN03150 419 FIDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLN 498 (623)
T ss_pred EEEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECc
Confidence 37788888888888888888999999999999998888888888889999999999887767788888888899999999
Q ss_pred ccccccccccccc
Q 035579 599 QCERLEALPKGLH 611 (814)
Q Consensus 599 ~~~~l~~lp~~~~ 611 (814)
+|...+.+|..+.
T Consensus 499 ~N~l~g~iP~~l~ 511 (623)
T PLN03150 499 GNSLSGRVPAALG 511 (623)
T ss_pred CCcccccCChHHh
Confidence 8877777776654
No 43
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.10 E-value=3.2e-06 Score=63.73 Aligned_cols=57 Identities=23% Similarity=0.304 Sum_probs=32.0
Q ss_pred CcceEeecccCCcccccccCCCCCCccEEEecCCCCceecCC-CCCCCCCcceEeeccc
Q 035579 543 SLETIGINFCENLKILPSGLHNLRQLREITIQRCGNLVSFPE-GGLPCAKLSELRIFQC 600 (814)
Q Consensus 543 ~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~-~~~~l~~L~~L~l~~~ 600 (814)
+|++|++++|.+....+..+..+++|++|++++| .++.++. .+..+++|++|++++|
T Consensus 2 ~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N-~l~~i~~~~f~~l~~L~~L~l~~N 59 (61)
T PF13855_consen 2 NLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNN-NLTSIPPDAFSNLPNLRYLDLSNN 59 (61)
T ss_dssp TESEEEETSSTESEECTTTTTTGTTESEEEETSS-SESEEETTTTTTSTTESEEEETSS
T ss_pred cCcEEECCCCCCCccCHHHHcCCCCCCEeEccCC-ccCccCHHHHcCCCCCCEEeCcCC
Confidence 4555555555555444455566666666666655 3344433 4555666666666665
No 44
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.07 E-value=7.3e-06 Score=61.80 Aligned_cols=58 Identities=26% Similarity=0.319 Sum_probs=37.6
Q ss_pred cccEEEEeccCCcchhhHhhcCCCCcceEeecccCCcccccccCCCCCCccEEEecCC
Q 035579 519 TLESLSVYKCSKLESIAERLDNNTSLETIGINFCENLKILPSGLHNLRQLREITIQRC 576 (814)
Q Consensus 519 ~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~~ 576 (814)
+|++|++++|.....-+..|.++++|++|++++|.+....+..|.++++|++|++++|
T Consensus 2 ~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N 59 (61)
T PF13855_consen 2 NLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNN 59 (61)
T ss_dssp TESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSS
T ss_pred cCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCC
Confidence 5666777766444333456666777777777776666666666677777777777666
No 45
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=98.05 E-value=4.2e-07 Score=89.61 Aligned_cols=85 Identities=16% Similarity=0.140 Sum_probs=55.3
Q ss_pred CcccccEEEEeccCCcch----hhHhhcCCCCcceEeecccCCcc----ccc-------ccCCCCCCccEEEecCCCCce
Q 035579 516 LPATLESLSVYKCSKLES----IAERLDNNTSLETIGINFCENLK----ILP-------SGLHNLRQLREITIQRCGNLV 580 (814)
Q Consensus 516 ~~~~L~~L~l~~~~~~~~----~~~~~~~l~~L~~L~L~~n~~~~----~~~-------~~~~~l~~L~~L~l~~~~~l~ 580 (814)
-..+++.+++++|..-.. +...+.+.++|+..++++- .++ .+| .++..+++|++++||+|..-.
T Consensus 28 ~~~s~~~l~lsgnt~G~EAa~~i~~~L~~~~~L~~v~~sd~-ftGR~~~Ei~e~L~~l~~aL~~~~~L~~ldLSDNA~G~ 106 (382)
T KOG1909|consen 28 PMDSLTKLDLSGNTFGTEAARAIAKVLASKKELREVNLSDM-FTGRLKDEIPEALKMLSKALLGCPKLQKLDLSDNAFGP 106 (382)
T ss_pred ccCceEEEeccCCchhHHHHHHHHHHHhhcccceeeehHhh-hcCCcHHHHHHHHHHHHHHHhcCCceeEeeccccccCc
Confidence 345688889998876543 4556777888888888763 222 222 344567788999998884322
Q ss_pred ecCC----CCCCCCCcceEeecccc
Q 035579 581 SFPE----GGLPCAKLSELRIFQCE 601 (814)
Q Consensus 581 ~~~~----~~~~l~~L~~L~l~~~~ 601 (814)
.-+. -+.++..|+.|++.+|.
T Consensus 107 ~g~~~l~~ll~s~~~L~eL~L~N~G 131 (382)
T KOG1909|consen 107 KGIRGLEELLSSCTDLEELYLNNCG 131 (382)
T ss_pred cchHHHHHHHHhccCHHHHhhhcCC
Confidence 2222 24457888888888883
No 46
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=97.92 E-value=1.7e-06 Score=94.14 Aligned_cols=124 Identities=26% Similarity=0.374 Sum_probs=53.2
Q ss_pred ccccEEEEeccCCcchhhHhhcCCCCcceEeecccCCcccccccCCCCCCccEEEecCCCCceecCCCCCCCCCcceEee
Q 035579 518 ATLESLSVYKCSKLESIAERLDNNTSLETIGINFCENLKILPSGLHNLRQLREITIQRCGNLVSFPEGGLPCAKLSELRI 597 (814)
Q Consensus 518 ~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l 597 (814)
.+++.|++.+|.. ..+...+..+++|++|++++|.+... ..+..++.|+.|++++| .+..+. .+..++.|+.+++
T Consensus 95 ~~l~~l~l~~n~i-~~i~~~l~~~~~L~~L~ls~N~I~~i--~~l~~l~~L~~L~l~~N-~i~~~~-~~~~l~~L~~l~l 169 (414)
T KOG0531|consen 95 KSLEALDLYDNKI-EKIENLLSSLVNLQVLDLSFNKITKL--EGLSTLTLLKELNLSGN-LISDIS-GLESLKSLKLLDL 169 (414)
T ss_pred cceeeeeccccch-hhcccchhhhhcchheeccccccccc--cchhhccchhhheeccC-cchhcc-CCccchhhhcccC
Confidence 3455555555322 22222244455555555555555544 23444444555555554 333332 2233445555555
Q ss_pred cccccccccccc-ccCCCCcceEEecC-ccCccccCCCCCceeEEEecCCcc
Q 035579 598 FQCERLEALPKG-LHNLTSLQELTIGG-ALPSLEEDGLPTNLHSLDIRGNME 647 (814)
Q Consensus 598 ~~~~~l~~lp~~-~~~l~~L~~L~l~~-~~~~l~~~~~~~~L~~L~l~~n~~ 647 (814)
++| .+..+... ...+.+++.+++++ .+..+........+..+++..|.+
T Consensus 170 ~~n-~i~~ie~~~~~~~~~l~~l~l~~n~i~~i~~~~~~~~l~~~~l~~n~i 220 (414)
T KOG0531|consen 170 SYN-RIVDIENDELSELISLEELDLGGNSIREIEGLDLLKKLVLLSLLDNKI 220 (414)
T ss_pred Ccc-hhhhhhhhhhhhccchHHHhccCCchhcccchHHHHHHHHhhcccccc
Confidence 555 23323221 23444555555554 333333222233333334444433
No 47
>PLN03150 hypothetical protein; Provisional
Probab=97.89 E-value=1.7e-05 Score=90.61 Aligned_cols=112 Identities=17% Similarity=0.133 Sum_probs=91.2
Q ss_pred ccEEeecCCCCcccccccCCCcccccEEEEeccCCcchhhHhhcCCCCcceEeecccCCcccccccCCCCCCccEEEecC
Q 035579 496 LEHLSIVGCPSLTCIFSKNELPATLESLSVYKCSKLESIAERLDNNTSLETIGINFCENLKILPSGLHNLRQLREITIQR 575 (814)
Q Consensus 496 L~~L~l~~~~~l~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~ 575 (814)
++.|+++++..-..+......+++|+.|++++|...+.+|..++.+++|+.|++++|.+.+.+|..++.+++|+.|++++
T Consensus 420 v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls~ 499 (623)
T PLN03150 420 IDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNG 499 (623)
T ss_pred EEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECcC
Confidence 67788877665444333344567899999999998889999999999999999999999999999999999999999999
Q ss_pred CCCceecCCCCCC-CCCcceEeecccccccccc
Q 035579 576 CGNLVSFPEGGLP-CAKLSELRIFQCERLEALP 607 (814)
Q Consensus 576 ~~~l~~~~~~~~~-l~~L~~L~l~~~~~l~~lp 607 (814)
|.....+|..+.. ..++..+++.+|..+...|
T Consensus 500 N~l~g~iP~~l~~~~~~~~~l~~~~N~~lc~~p 532 (623)
T PLN03150 500 NSLSGRVPAALGGRLLHRASFNFTDNAGLCGIP 532 (623)
T ss_pred CcccccCChHHhhccccCceEEecCCccccCCC
Confidence 9877788876654 2467788888886554443
No 48
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=97.88 E-value=2.3e-06 Score=93.17 Aligned_cols=167 Identities=19% Similarity=0.161 Sum_probs=81.4
Q ss_pred CCccEEeecCCCCcccccccCCCcccccEEEEeccCCcchhhHhhcCCCCcceEeecccCCcccccccCCCCCCccEEEe
Q 035579 494 SILEHLSIVGCPSLTCIFSKNELPATLESLSVYKCSKLESIAERLDNNTSLETIGINFCENLKILPSGLHNLRQLREITI 573 (814)
Q Consensus 494 ~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l 573 (814)
.+++.+++.+...... .......++|++|++++|.+...-+ +..++.|+.|++.+|.+... ..+..++.|+.+++
T Consensus 95 ~~l~~l~l~~n~i~~i-~~~l~~~~~L~~L~ls~N~I~~i~~--l~~l~~L~~L~l~~N~i~~~--~~~~~l~~L~~l~l 169 (414)
T KOG0531|consen 95 KSLEALDLYDNKIEKI-ENLLSSLVNLQVLDLSFNKITKLEG--LSTLTLLKELNLSGNLISDI--SGLESLKSLKLLDL 169 (414)
T ss_pred cceeeeeccccchhhc-ccchhhhhcchheeccccccccccc--hhhccchhhheeccCcchhc--cCCccchhhhcccC
Confidence 4566666655332221 2213344566666666654444333 44555566666666666544 34444666666666
Q ss_pred cCCCCceecCCC-CCCCCCcceEeeccccccccccccccCCCCcceEEecC-ccCccccCCCCCc--eeEEEecCCcchh
Q 035579 574 QRCGNLVSFPEG-GLPCAKLSELRIFQCERLEALPKGLHNLTSLQELTIGG-ALPSLEEDGLPTN--LHSLDIRGNMEIW 649 (814)
Q Consensus 574 ~~~~~l~~~~~~-~~~l~~L~~L~l~~~~~l~~lp~~~~~l~~L~~L~l~~-~~~~l~~~~~~~~--L~~L~l~~n~~~~ 649 (814)
++| .+..+... ...+.+++.+++.+|. +..+ .++..+..+..+++.. .+..+........ |+.+++++|+...
T Consensus 170 ~~n-~i~~ie~~~~~~~~~l~~l~l~~n~-i~~i-~~~~~~~~l~~~~l~~n~i~~~~~l~~~~~~~L~~l~l~~n~i~~ 246 (414)
T KOG0531|consen 170 SYN-RIVDIENDELSELISLEELDLGGNS-IREI-EGLDLLKKLVLLSLLDNKISKLEGLNELVMLHLRELYLSGNRISR 246 (414)
T ss_pred Ccc-hhhhhhhhhhhhccchHHHhccCCc-hhcc-cchHHHHHHHHhhcccccceeccCcccchhHHHHHHhcccCcccc
Confidence 666 33333321 2445566666666652 2222 1222333333334443 3333332222233 5666666665544
Q ss_pred hhhhhcccccCCCCcccEEEEecC
Q 035579 650 KSMIERGRGFHRFSSLRHLTIDGC 673 (814)
Q Consensus 650 ~~~~~~~~~l~~l~~L~~L~l~~~ 673 (814)
.. ..+..+..+..|++.++
T Consensus 247 ~~-----~~~~~~~~l~~l~~~~n 265 (414)
T KOG0531|consen 247 SP-----EGLENLKNLPVLDLSSN 265 (414)
T ss_pred cc-----ccccccccccccchhhc
Confidence 31 23445556666666554
No 49
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=97.78 E-value=7.9e-07 Score=95.56 Aligned_cols=195 Identities=22% Similarity=0.204 Sum_probs=121.7
Q ss_pred hcCCCCcceEeecccCCcccc-cccCCCCCCccEEEecCCCCceecCCCCCCC-CCcceEeecccccccccccc------
Q 035579 538 LDNNTSLETIGINFCENLKIL-PSGLHNLRQLREITIQRCGNLVSFPEGGLPC-AKLSELRIFQCERLEALPKG------ 609 (814)
Q Consensus 538 ~~~l~~L~~L~L~~n~~~~~~-~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~l-~~L~~L~l~~~~~l~~lp~~------ 609 (814)
+.-+++++.+.+-.-...+.. |-.+..+.+|++|.+.+|+.-. .- ++..+ ..|++|.-++ .+..+...
T Consensus 80 ~d~lqkt~~lkl~~~pa~~pt~pi~ifpF~sLr~LElrg~~L~~-~~-GL~~lr~qLe~LIC~~--Sl~Al~~v~ascgg 155 (1096)
T KOG1859|consen 80 LDFLQKTKVLKLLPSPARDPTEPISIFPFRSLRVLELRGCDLST-AK-GLQELRHQLEKLICHN--SLDALRHVFASCGG 155 (1096)
T ss_pred HHHHhhheeeeecccCCCCCCCCceeccccceeeEEecCcchhh-hh-hhHHHHHhhhhhhhhc--cHHHHHHHHHHhcc
Confidence 334455555555444433322 4456667788888888874332 11 11111 2344442211 11111100
Q ss_pred -cc---CCCCcceEEecC-ccCcccc-CCCCCceeEEEecCCcchhhhhhhcccccCCCCcccEEEEecCCCCCccCCcc
Q 035579 610 -LH---NLTSLQELTIGG-ALPSLEE-DGLPTNLHSLDIRGNMEIWKSMIERGRGFHRFSSLRHLTIDGCDDDMVSFPPE 683 (814)
Q Consensus 610 -~~---~l~~L~~L~l~~-~~~~l~~-~~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~l~~i~~~ 683 (814)
+. ....|...+.+. .+..++. ..+++.|+.|+|+.|+..+. ..+..++.|++|||++| .+..+|.-
T Consensus 156 d~~ns~~Wn~L~~a~fsyN~L~~mD~SLqll~ale~LnLshNk~~~v------~~Lr~l~~LkhLDlsyN--~L~~vp~l 227 (1096)
T KOG1859|consen 156 DISNSPVWNKLATASFSYNRLVLMDESLQLLPALESLNLSHNKFTKV------DNLRRLPKLKHLDLSYN--CLRHVPQL 227 (1096)
T ss_pred ccccchhhhhHhhhhcchhhHHhHHHHHHHHHHhhhhccchhhhhhh------HHHHhcccccccccccc--hhcccccc
Confidence 00 112344444444 4444443 45578999999999988776 34778999999999998 67777765
Q ss_pred ccccCCCCCCCCCcceEEeccCCCCcccccccccCCCCCeEEecCCCCCCccCCC---CCcCCccEEeecCCch
Q 035579 684 DKRLGTALPLPASLTDLEIGRFPNLERLSSSIVDLQNLTELCLRDCPKLKYFPEK---GLPSSLLRLSILSCPL 754 (814)
Q Consensus 684 ~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~l~~L~~L~l~~c~~l~~lp~~---~l~~~L~~L~i~~c~~ 754 (814)
. ..--.|..|.+++ |.++++- ++.++.+|+.||+++ |-|....+- +.+.+|++|++.|+|-
T Consensus 228 ~-------~~gc~L~~L~lrn-N~l~tL~-gie~LksL~~LDlsy-Nll~~hseL~pLwsLs~L~~L~LeGNPl 291 (1096)
T KOG1859|consen 228 S-------MVGCKLQLLNLRN-NALTTLR-GIENLKSLYGLDLSY-NLLSEHSELEPLWSLSSLIVLWLEGNPL 291 (1096)
T ss_pred c-------hhhhhheeeeecc-cHHHhhh-hHHhhhhhhccchhH-hhhhcchhhhHHHHHHHHHHHhhcCCcc
Confidence 4 1223499999999 8999887 788999999999999 556555442 2267899999999884
No 50
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.66 E-value=3.9e-05 Score=74.14 Aligned_cols=88 Identities=9% Similarity=-0.055 Sum_probs=61.0
Q ss_pred hhccccccEEEeeccCCcc--ccccccCCCCCcceEeeecCCCCcccCCC-CCCCCCcEEEecccCCCCCCchhhhcCCC
Q 035579 361 CELSCRLEYLILSCCEGLV--KLPQSSLSLCSLREIGIYKCSSLVSFPEV-ALPSKLEKIHIGACDALKSLPEAWMCDTN 437 (814)
Q Consensus 361 ~~~~~~L~~L~L~~~~~~~--~~~~~~~~l~~L~~L~L~~~~~l~~~~~~-~~~~~L~~L~l~~~~~l~~~~~~~~~~~l 437 (814)
+..++.++.+||.+|.+.. ++...+.++|.|++|+|+.|+.-..+... ....+|+.|.+.+...-..-...+. ..+
T Consensus 67 ~~~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~lVLNgT~L~w~~~~s~l-~~l 145 (418)
T KOG2982|consen 67 GSSVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRVLVLNGTGLSWTQSTSSL-DDL 145 (418)
T ss_pred HHHhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCcccccceEEEEEcCCCCChhhhhhhh-hcc
Confidence 3345889999999998754 34455678999999999987654545444 3467899999988873222222222 677
Q ss_pred CCccEEEEecCC
Q 035579 438 SSLEILYIEGCR 449 (814)
Q Consensus 438 ~~L~~L~l~~~~ 449 (814)
|.+++|.++.|+
T Consensus 146 P~vtelHmS~N~ 157 (418)
T KOG2982|consen 146 PKVTELHMSDNS 157 (418)
T ss_pred hhhhhhhhccch
Confidence 888888888864
No 51
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=97.64 E-value=1.4e-06 Score=93.74 Aligned_cols=122 Identities=25% Similarity=0.295 Sum_probs=87.7
Q ss_pred ccEEEEeccCCcchhhHhhcCCCCcceEeecccCCcccccccCCCCCCccEEEecCCCCceecCCC-CCCCCCcceEeec
Q 035579 520 LESLSVYKCSKLESIAERLDNNTSLETIGINFCENLKILPSGLHNLRQLREITIQRCGNLVSFPEG-GLPCAKLSELRIF 598 (814)
Q Consensus 520 L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~-~~~l~~L~~L~l~ 598 (814)
|.+.+.++ +.+..+...+.-++.++.|+|++|++... +.+..+++|++|||++| .++.+|.- ...+ .|..|.++
T Consensus 166 L~~a~fsy-N~L~~mD~SLqll~ale~LnLshNk~~~v--~~Lr~l~~LkhLDlsyN-~L~~vp~l~~~gc-~L~~L~lr 240 (1096)
T KOG1859|consen 166 LATASFSY-NRLVLMDESLQLLPALESLNLSHNKFTKV--DNLRRLPKLKHLDLSYN-CLRHVPQLSMVGC-KLQLLNLR 240 (1096)
T ss_pred Hhhhhcch-hhHHhHHHHHHHHHHhhhhccchhhhhhh--HHHHhcccccccccccc-hhccccccchhhh-hheeeeec
Confidence 44444444 34445555677778888899999888765 36788899999999987 67777753 2334 49999998
Q ss_pred cccccccccccccCCCCcceEEecC----ccCccccCCCCCceeEEEecCCcch
Q 035579 599 QCERLEALPKGLHNLTSLQELTIGG----ALPSLEEDGLPTNLHSLDIRGNMEI 648 (814)
Q Consensus 599 ~~~~l~~lp~~~~~l~~L~~L~l~~----~~~~l~~~~~~~~L~~L~l~~n~~~ 648 (814)
+| -++.+ .++.++.+|+.||+++ +...+...+.+..|+.|.|.+|++-
T Consensus 241 nN-~l~tL-~gie~LksL~~LDlsyNll~~hseL~pLwsLs~L~~L~LeGNPl~ 292 (1096)
T KOG1859|consen 241 NN-ALTTL-RGIENLKSLYGLDLSYNLLSEHSELEPLWSLSSLIVLWLEGNPLC 292 (1096)
T ss_pred cc-HHHhh-hhHHhhhhhhccchhHhhhhcchhhhHHHHHHHHHHHhhcCCccc
Confidence 88 56655 4677889999999988 3344444556688999999999753
No 52
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=97.44 E-value=0.00017 Score=49.58 Aligned_cols=41 Identities=20% Similarity=0.381 Sum_probs=31.7
Q ss_pred CCcceEEeccCCCCcccccccccCCCCCeEEecCCCCCCccCC
Q 035579 695 ASLTDLEIGRFPNLERLSSSIVDLQNLTELCLRDCPKLKYFPE 737 (814)
Q Consensus 695 ~~L~~L~l~~~~~l~~l~~~~~~l~~L~~L~l~~c~~l~~lp~ 737 (814)
++|++|++++ ++++.+|+.+.++++|+.|++++| .++++++
T Consensus 1 ~~L~~L~l~~-N~i~~l~~~l~~l~~L~~L~l~~N-~i~~i~~ 41 (44)
T PF12799_consen 1 KNLEELDLSN-NQITDLPPELSNLPNLETLNLSNN-PISDISP 41 (44)
T ss_dssp TT-SEEEETS-SS-SSHGGHGTTCTTSSEEEETSS-CCSBEGG
T ss_pred CcceEEEccC-CCCcccCchHhCCCCCCEEEecCC-CCCCCcC
Confidence 4688888888 788888877889999999999985 6777654
No 53
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=97.43 E-value=0.0003 Score=64.53 Aligned_cols=104 Identities=14% Similarity=0.187 Sum_probs=81.7
Q ss_pred CCceeEEEecCCcchhhhhhhcccccCCCCcccEEEEecCCCCCccCCccccccCCCCCCCCCcceEEeccCCCCccccc
Q 035579 634 PTNLHSLDIRGNMEIWKSMIERGRGFHRFSSLRHLTIDGCDDDMVSFPPEDKRLGTALPLPASLTDLEIGRFPNLERLSS 713 (814)
Q Consensus 634 ~~~L~~L~l~~n~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~l~~i~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~ 713 (814)
..+...+++++|.+... ..|..++.|.+|.+++| .+..|..... ..++.|..|.+.+ |.+.++..
T Consensus 41 ~d~~d~iDLtdNdl~~l------~~lp~l~rL~tLll~nN--rIt~I~p~L~------~~~p~l~~L~Ltn-Nsi~~l~d 105 (233)
T KOG1644|consen 41 LDQFDAIDLTDNDLRKL------DNLPHLPRLHTLLLNNN--RITRIDPDLD------TFLPNLKTLILTN-NSIQELGD 105 (233)
T ss_pred ccccceecccccchhhc------ccCCCccccceEEecCC--cceeeccchh------hhccccceEEecC-cchhhhhh
Confidence 45677889999987665 56788999999999987 8888887765 5688999999999 88888765
Q ss_pred --ccccCCCCCeEEecCCCCCCccCCCC-----CcCCccEEeecCCc
Q 035579 714 --SIVDLQNLTELCLRDCPKLKYFPEKG-----LPSSLLRLSILSCP 753 (814)
Q Consensus 714 --~~~~l~~L~~L~l~~c~~l~~lp~~~-----l~~~L~~L~i~~c~ 753 (814)
.+..+|+|++|.+-++| +..-..-. .+++|+.||+.+-.
T Consensus 106 l~pLa~~p~L~~Ltll~Np-v~~k~~YR~yvl~klp~l~~LDF~kVt 151 (233)
T KOG1644|consen 106 LDPLASCPKLEYLTLLGNP-VEHKKNYRLYVLYKLPSLRTLDFQKVT 151 (233)
T ss_pred cchhccCCccceeeecCCc-hhcccCceeEEEEecCcceEeehhhhh
Confidence 67889999999998854 44433321 17899999998864
No 54
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=97.36 E-value=0.00018 Score=49.43 Aligned_cols=37 Identities=27% Similarity=0.419 Sum_probs=29.5
Q ss_pred cccceeecCCCCccccccccCCCCCCCCccCceEEcCCCCC
Q 035579 5 IKLHHLNNSNTDSLEEMPLGIGKLTCLQTLSNFVVGKDSGS 45 (814)
Q Consensus 5 ~~L~~L~l~~~~~~~~lp~~i~~L~~L~~L~~~~~~~~~~~ 45 (814)
++||+|++++|. ++.+|++|++|++|++| ++++....
T Consensus 1 ~~L~~L~l~~N~-i~~l~~~l~~l~~L~~L---~l~~N~i~ 37 (44)
T PF12799_consen 1 KNLEELDLSNNQ-ITDLPPELSNLPNLETL---NLSNNPIS 37 (44)
T ss_dssp TT-SEEEETSSS--SSHGGHGTTCTTSSEE---EETSSCCS
T ss_pred CcceEEEccCCC-CcccCchHhCCCCCCEE---EecCCCCC
Confidence 589999999999 99999989999999999 66655433
No 55
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.15 E-value=0.00045 Score=67.05 Aligned_cols=185 Identities=15% Similarity=0.127 Sum_probs=82.6
Q ss_pred CCCcceEeecccCCcc--cccccCCCCCCccEEEecCCCCceecCCCCCCCCCcceEeecccccc-ccccccccCCCCcc
Q 035579 541 NTSLETIGINFCENLK--ILPSGLHNLRQLREITIQRCGNLVSFPEGGLPCAKLSELRIFQCERL-EALPKGLHNLTSLQ 617 (814)
Q Consensus 541 l~~L~~L~L~~n~~~~--~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~~~~l-~~lp~~~~~l~~L~ 617 (814)
.+.++.+||.+|.+.. ++..-+.++|.|+.|+++.|+.-..+...-.+..+|++|.+.+-... +.....+..+|.++
T Consensus 70 ~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~lVLNgT~L~w~~~~s~l~~lP~vt 149 (418)
T KOG2982|consen 70 VTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRVLVLNGTGLSWTQSTSSLDDLPKVT 149 (418)
T ss_pred hhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCcccccceEEEEEcCCCCChhhhhhhhhcchhhh
Confidence 4455555666555542 23333445566666666555322211111123445555555443210 11122334444555
Q ss_pred eEEecC-ccCcccc-----CCCCCceeEEEecCCcchhhhhhhcccccCCCCcccEEEEecCCCCCccCCccccccCCCC
Q 035579 618 ELTIGG-ALPSLEE-----DGLPTNLHSLDIRGNMEIWKSMIERGRGFHRFSSLRHLTIDGCDDDMVSFPPEDKRLGTAL 691 (814)
Q Consensus 618 ~L~l~~-~~~~l~~-----~~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~l~~i~~~~~~~~~~~ 691 (814)
.|.++. ++..+.. ...-+.+++|+...|......... ..-..+|++..+.+..| .+.+...+-+ .
T Consensus 150 elHmS~N~~rq~n~Dd~c~e~~s~~v~tlh~~~c~~~~w~~~~--~l~r~Fpnv~sv~v~e~--PlK~~s~ek~-----s 220 (418)
T KOG2982|consen 150 ELHMSDNSLRQLNLDDNCIEDWSTEVLTLHQLPCLEQLWLNKN--KLSRIFPNVNSVFVCEG--PLKTESSEKG-----S 220 (418)
T ss_pred hhhhccchhhhhccccccccccchhhhhhhcCCcHHHHHHHHH--hHHhhcccchheeeecC--cccchhhccc-----C
Confidence 554443 1211110 111245555555555433221111 22334566666666664 3333322221 1
Q ss_pred CCCCCcceEEeccCCCCccccc--ccccCCCCCeEEecCCCCCCcc
Q 035579 692 PLPASLTDLEIGRFPNLERLSS--SIVDLQNLTELCLRDCPKLKYF 735 (814)
Q Consensus 692 ~~~~~L~~L~l~~~~~l~~l~~--~~~~l~~L~~L~l~~c~~l~~l 735 (814)
..++.+-.|+++. +++.+..+ .+..++.|..|.+.+.|-...+
T Consensus 221 e~~p~~~~LnL~~-~~idswasvD~Ln~f~~l~dlRv~~~Pl~d~l 265 (418)
T KOG2982|consen 221 EPFPSLSCLNLGA-NNIDSWASVDALNGFPQLVDLRVSENPLSDPL 265 (418)
T ss_pred CCCCcchhhhhcc-cccccHHHHHHHcCCchhheeeccCCcccccc
Confidence 2345555666666 55554433 5566667777766666544444
No 56
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=97.11 E-value=2.6e-05 Score=87.67 Aligned_cols=193 Identities=24% Similarity=0.337 Sum_probs=93.5
Q ss_pred hcCCCCcceEeecccCCccc-ccccC-CCCCCccEEEecCCCCcee--cCCCCCCCCCcceEeecccccccc--cccccc
Q 035579 538 LDNNTSLETIGINFCENLKI-LPSGL-HNLRQLREITIQRCGNLVS--FPEGGLPCAKLSELRIFQCERLEA--LPKGLH 611 (814)
Q Consensus 538 ~~~l~~L~~L~L~~n~~~~~-~~~~~-~~l~~L~~L~l~~~~~l~~--~~~~~~~l~~L~~L~l~~~~~l~~--lp~~~~ 611 (814)
...+.+|+.++++++....+ .-..+ ..+++|++|.+.+|..++. +-.....+++|++|++++|..++. +.....
T Consensus 239 ~~~~~~L~~l~l~~~~~isd~~l~~l~~~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~~~d~~l~~~~~ 318 (482)
T KOG1947|consen 239 LSICRKLKSLDLSGCGLVTDIGLSALASRCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHGLTDSGLEALLK 318 (482)
T ss_pred hhhcCCcCccchhhhhccCchhHHHHHhhCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCccchHHHHHHHHH
Confidence 34455666666666653221 11111 2256677777666643221 111233456677777777655422 222233
Q ss_pred CCCCcceEEecCccCccccCCCCCceeEEEecCCcchh-hhhhhcccccCCCCcccEEEEecCCCCCccCCccccccCCC
Q 035579 612 NLTSLQELTIGGALPSLEEDGLPTNLHSLDIRGNMEIW-KSMIERGRGFHRFSSLRHLTIDGCDDDMVSFPPEDKRLGTA 690 (814)
Q Consensus 612 ~l~~L~~L~l~~~~~~l~~~~~~~~L~~L~l~~n~~~~-~~~~~~~~~l~~l~~L~~L~l~~~~~~l~~i~~~~~~~~~~ 690 (814)
++++|+.+.+.. ...++.++.+.+..+.... +.... .....++.++.+.+..+.
T Consensus 319 ~c~~l~~l~~~~-------~~~c~~l~~~~l~~~~~~~~d~~~~--~~~~~~~~l~~~~l~~~~---------------- 373 (482)
T KOG1947|consen 319 NCPNLRELKLLS-------LNGCPSLTDLSLSGLLTLTSDDLAE--LILRSCPKLTDLSLSYCG---------------- 373 (482)
T ss_pred hCcchhhhhhhh-------cCCCccHHHHHHHHhhccCchhHhH--HHHhcCCCcchhhhhhhh----------------
Confidence 455555544332 0002334444444433321 01111 335566677777776641
Q ss_pred CCCCCCcc-eEEeccCCCC-cccccccccCCCCCeEEecCCCCCCccCCCCC---cCCccEEeecCCchhhHh
Q 035579 691 LPLPASLT-DLEIGRFPNL-ERLSSSIVDLQNLTELCLRDCPKLKYFPEKGL---PSSLLRLSILSCPLIEEK 758 (814)
Q Consensus 691 ~~~~~~L~-~L~l~~~~~l-~~l~~~~~~l~~L~~L~l~~c~~l~~lp~~~l---~~~L~~L~i~~c~~l~~~ 758 (814)
..... .+.+.+|+.+ ..+..-......++.|+++.|...+.-.-... ...++.+++.+|+.+...
T Consensus 374 ---~~~~~~~~~l~gc~~l~~~l~~~~~~~~~l~~L~l~~~~~~t~~~l~~~~~~~~~~~~l~~~~~~~~~~~ 443 (482)
T KOG1947|consen 374 ---ISDLGLELSLRGCPNLTESLELRLCRSDSLRVLNLSDCRLVTDKGLRCLADSCSNLKDLDLSGCRVITLK 443 (482)
T ss_pred ---ccCcchHHHhcCCcccchHHHHHhccCCccceEecccCccccccchHHHhhhhhccccCCccCcccccch
Confidence 11111 4556666666 33333333344488888888865544322111 456777888888766544
No 57
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=96.98 E-value=8.5e-05 Score=84.49 Aligned_cols=110 Identities=20% Similarity=0.235 Sum_probs=50.3
Q ss_pred CcCcccEEEeeeCCC--CCCccccCCCCCcccEEEEecCCCCCCCCCCCCCCccceeeecCCcCceeeC-ccccCCCCCC
Q 035579 117 HKNLEQFGICGYGGT--KFPTWLGDCSFSNLVTLKFKDCGVCTTLPSVGQLSSLKHLTVRGMSRVKSLG-SEFYGNDSPI 193 (814)
Q Consensus 117 ~~~L~~L~l~~~~~~--~~p~~~~~~~l~~L~~L~L~~~~~~~~l~~l~~l~~L~~L~l~~~~~~~~~~-~~~~~~~~~~ 193 (814)
+|.|++|.+++-... .+... + .+|++|..||+|++. ++.+..++++++|+.|.+.+..--.... .+. -
T Consensus 147 LPsL~sL~i~~~~~~~~dF~~l-c-~sFpNL~sLDIS~Tn-I~nl~GIS~LknLq~L~mrnLe~e~~~~l~~L------F 217 (699)
T KOG3665|consen 147 LPSLRSLVISGRQFDNDDFSQL-C-ASFPNLRSLDISGTN-ISNLSGISRLKNLQVLSMRNLEFESYQDLIDL------F 217 (699)
T ss_pred CcccceEEecCceecchhHHHH-h-hccCccceeecCCCC-ccCcHHHhccccHHHHhccCCCCCchhhHHHH------h
Confidence 566666666543211 11111 1 156666666666665 4445556666666666665422111000 011 1
Q ss_pred CCCCcceeecccccccccc-ccCCC-CCCcccCCcccEEEEccCC
Q 035579 194 PFPCLETLRFENMQEWEDW-IPLRS-DQGVEGFPKLRELHIISCS 236 (814)
Q Consensus 194 ~~~~L~~L~l~~~~~l~~~-~~~~~-~~~~~~l~~L~~L~l~~c~ 236 (814)
.+.+|+.||++.-.+.... ....+ +- -..+|+|+.|+.++..
T Consensus 218 ~L~~L~vLDIS~~~~~~~~~ii~qYlec-~~~LpeLrfLDcSgTd 261 (699)
T KOG3665|consen 218 NLKKLRVLDISRDKNNDDTKIIEQYLEC-GMVLPELRFLDCSGTD 261 (699)
T ss_pred cccCCCeeeccccccccchHHHHHHHHh-cccCccccEEecCCcc
Confidence 2566666666652222211 00000 00 1237777777777654
No 58
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=96.90 E-value=0.00019 Score=80.60 Aligned_cols=119 Identities=24% Similarity=0.308 Sum_probs=71.6
Q ss_pred hhcCCCCCeEEEecCCCcccchhhHHHHHHHHhhhccccccEEEeecc-CCccccc----cccCCCCCcceEeeecCCCC
Q 035579 328 LQDICSLRRLTIRSCPKLQSLVAEEEKDQQQQLCELSCRLEYLILSCC-EGLVKLP----QSSLSLCSLREIGIYKCSSL 402 (814)
Q Consensus 328 ~~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~l~~~~~~L~~L~L~~~-~~~~~~~----~~~~~l~~L~~L~L~~~~~l 402 (814)
...++.|+.+.+.+|..+.... +..++..+++|+.|++++| ......+ .....+++|+.|++++|..+
T Consensus 184 ~~~~~~L~~l~l~~~~~~~~~~-------~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~i 256 (482)
T KOG1947|consen 184 LSSCPLLKRLSLSGCSKITDDS-------LDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLV 256 (482)
T ss_pred HhhCchhhHhhhcccccCChhh-------HHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhcc
Confidence 3457888888888887766532 1222233478888888873 2222222 23344678888888887655
Q ss_pred cccC--CCC-CCCCCcEEEecccCCCCCCchhhhcCCCCCccEEEEecCCCCcc
Q 035579 403 VSFP--EVA-LPSKLEKIHIGACDALKSLPEAWMCDTNSSLEILYIEGCRSLTY 453 (814)
Q Consensus 403 ~~~~--~~~-~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~ 453 (814)
++.. .++ .+++|+.|.+.+|..+....-......++.|++|++++|..+++
T Consensus 257 sd~~l~~l~~~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~~~d 310 (482)
T KOG1947|consen 257 TDIGLSALASRCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHGLTD 310 (482)
T ss_pred CchhHHHHHhhCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCccchH
Confidence 5433 122 26788888877777543322222226677888888888876643
No 59
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=96.89 E-value=0.00058 Score=77.85 Aligned_cols=132 Identities=17% Similarity=0.110 Sum_probs=73.5
Q ss_pred eEEEcCCCCcchhcc-chhhhhhcCCCCCeEEEecCCCcccchhhHHHHHHHHhhhccccccEEEeeccCCccccccccC
Q 035579 308 ELKINDMKEQTYMWK-SHNELLQDICSLRRLTIRSCPKLQSLVAEEEKDQQQQLCELSCRLEYLILSCCEGLVKLPQSSL 386 (814)
Q Consensus 308 ~L~~~~l~~~~~~~~-~~~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~~~~~ 386 (814)
+|+.+|+++.+.... .+......+|+|+.|.+.+- .+.. . .+..+...||+|..||+|++.+... .+++
T Consensus 123 nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~-~~~~---~----dF~~lc~sFpNL~sLDIS~TnI~nl--~GIS 192 (699)
T KOG3665|consen 123 NLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGR-QFDN---D----DFSQLCASFPNLRSLDISGTNISNL--SGIS 192 (699)
T ss_pred hhhhcCccccchhhccHHHHHhhhCcccceEEecCc-eecc---h----hHHHHhhccCccceeecCCCCccCc--HHHh
Confidence 444445554443222 22333456788888888773 2211 1 1334444458888888888775332 4577
Q ss_pred CCCCcceEeeecCCCCc--ccCCCCCCCCCcEEEecccCCCCCC--chhhh--cCCCCCccEEEEecCC
Q 035579 387 SLCSLREIGIYKCSSLV--SFPEVALPSKLEKIHIGACDALKSL--PEAWM--CDTNSSLEILYIEGCR 449 (814)
Q Consensus 387 ~l~~L~~L~L~~~~~l~--~~~~~~~~~~L~~L~l~~~~~l~~~--~~~~~--~~~l~~L~~L~l~~~~ 449 (814)
.+++|+.|.+.+..... .+-++..+++|+.||+|.......- ...+. ...+|+|+.||.++..
T Consensus 193 ~LknLq~L~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTd 261 (699)
T KOG3665|consen 193 RLKNLQVLSMRNLEFESYQDLIDLFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTD 261 (699)
T ss_pred ccccHHHHhccCCCCCchhhHHHHhcccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCCcc
Confidence 78888888777643321 1224556788888888876633321 11110 1447777777777643
No 60
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=96.81 E-value=0.0014 Score=60.30 Aligned_cols=92 Identities=23% Similarity=0.236 Sum_probs=63.9
Q ss_pred hhcCCCCCcCcccEEEeeeCCCCCCccccCCCCCcccEEEEecCCC--CCCCCCCCCCCccceeeecCCcCceeeCcccc
Q 035579 110 VLDMLKPHKNLEQFGICGYGGTKFPTWLGDCSFSNLVTLKFKDCGV--CTTLPSVGQLSSLKHLTVRGMSRVKSLGSEFY 187 (814)
Q Consensus 110 ~~~~l~~~~~L~~L~l~~~~~~~~p~~~~~~~l~~L~~L~L~~~~~--~~~l~~l~~l~~L~~L~l~~~~~~~~~~~~~~ 187 (814)
.+..|..+++|.+|.++.|.++.+...+.. .+++|..|.|.+|.+ .+++.++..+|.|++|.+-+|+.-..-....+
T Consensus 56 ~l~~lp~l~rL~tLll~nNrIt~I~p~L~~-~~p~l~~L~LtnNsi~~l~dl~pLa~~p~L~~Ltll~Npv~~k~~YR~y 134 (233)
T KOG1644|consen 56 KLDNLPHLPRLHTLLLNNNRITRIDPDLDT-FLPNLKTLILTNNSIQELGDLDPLASCPKLEYLTLLGNPVEHKKNYRLY 134 (233)
T ss_pred hcccCCCccccceEEecCCcceeeccchhh-hccccceEEecCcchhhhhhcchhccCCccceeeecCCchhcccCceeE
Confidence 357788889999999999998888666653 578899999999885 45677788899999999888653222211111
Q ss_pred CCCCCCCCCCcceeeccc
Q 035579 188 GNDSPIPFPCLETLRFEN 205 (814)
Q Consensus 188 ~~~~~~~~~~L~~L~l~~ 205 (814)
. ...+|+|+.|++.+
T Consensus 135 v---l~klp~l~~LDF~k 149 (233)
T KOG1644|consen 135 V---LYKLPSLRTLDFQK 149 (233)
T ss_pred E---EEecCcceEeehhh
Confidence 1 11256666666654
No 61
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=96.70 E-value=0.00013 Score=62.21 Aligned_cols=90 Identities=17% Similarity=0.203 Sum_probs=66.4
Q ss_pred ceeEEEecCCcchhhhhhhcccccCCCCcccEEEEecCCCCCccCCccccccCCCCCCCCCcceEEeccCCCCccccccc
Q 035579 636 NLHSLDIRGNMEIWKSMIERGRGFHRFSSLRHLTIDGCDDDMVSFPPEDKRLGTALPLPASLTDLEIGRFPNLERLSSSI 715 (814)
Q Consensus 636 ~L~~L~l~~n~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~l~~i~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~ 715 (814)
.+..+++++|++....-. +..+.....|+..+|++| .+..+|.... ..++..++|++++ |++..+|..+
T Consensus 28 E~h~ldLssc~lm~i~da--vy~l~~~~el~~i~ls~N--~fk~fp~kft------~kf~t~t~lNl~~-neisdvPeE~ 96 (177)
T KOG4579|consen 28 ELHFLDLSSCQLMYIADA--VYMLSKGYELTKISLSDN--GFKKFPKKFT------IKFPTATTLNLAN-NEISDVPEEL 96 (177)
T ss_pred HhhhcccccchhhHHHHH--HHHHhCCceEEEEecccc--hhhhCCHHHh------hccchhhhhhcch-hhhhhchHHH
Confidence 355677888876533211 145666778888889887 8888888763 4567888999998 8899999888
Q ss_pred ccCCCCCeEEecCCCCCCccCC
Q 035579 716 VDLQNLTELCLRDCPKLKYFPE 737 (814)
Q Consensus 716 ~~l~~L~~L~l~~c~~l~~lp~ 737 (814)
..++.|+.|+++.+ .+...|.
T Consensus 97 Aam~aLr~lNl~~N-~l~~~p~ 117 (177)
T KOG4579|consen 97 AAMPALRSLNLRFN-PLNAEPR 117 (177)
T ss_pred hhhHHhhhcccccC-ccccchH
Confidence 88999999999884 5666655
No 62
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=96.59 E-value=0.00014 Score=62.04 Aligned_cols=108 Identities=17% Similarity=0.157 Sum_probs=79.7
Q ss_pred ccEEEEeccCCc--chhhHhhcCCCCcceEeecccCCcccccccCCCCCCccEEEecCCCCceecCCCCCCCCCcceEee
Q 035579 520 LESLSVYKCSKL--ESIAERLDNNTSLETIGINFCENLKILPSGLHNLRQLREITIQRCGNLVSFPEGGLPCAKLSELRI 597 (814)
Q Consensus 520 L~~L~l~~~~~~--~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l 597 (814)
+..++++.|... ...+..+.....|+..++++|.+....+.....++.++.|++++| .+.++|..+..++.|+.+++
T Consensus 29 ~h~ldLssc~lm~i~davy~l~~~~el~~i~ls~N~fk~fp~kft~kf~t~t~lNl~~n-eisdvPeE~Aam~aLr~lNl 107 (177)
T KOG4579|consen 29 LHFLDLSSCQLMYIADAVYMLSKGYELTKISLSDNGFKKFPKKFTIKFPTATTLNLANN-EISDVPEELAAMPALRSLNL 107 (177)
T ss_pred hhhcccccchhhHHHHHHHHHhCCceEEEEecccchhhhCCHHHhhccchhhhhhcchh-hhhhchHHHhhhHHhhhccc
Confidence 556677777543 334556667777888899998877665555566778899999987 78889988888999999999
Q ss_pred ccccccccccccccCCCCcceEEecC-ccCccc
Q 035579 598 FQCERLEALPKGLHNLTSLQELTIGG-ALPSLE 629 (814)
Q Consensus 598 ~~~~~l~~lp~~~~~l~~L~~L~l~~-~~~~l~ 629 (814)
+.| .+...|.-+..+.++..|+..+ ....++
T Consensus 108 ~~N-~l~~~p~vi~~L~~l~~Lds~~na~~eid 139 (177)
T KOG4579|consen 108 RFN-PLNAEPRVIAPLIKLDMLDSPENARAEID 139 (177)
T ss_pred ccC-ccccchHHHHHHHhHHHhcCCCCccccCc
Confidence 988 5666677676777777777766 444443
No 63
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=96.54 E-value=0.0011 Score=37.71 Aligned_cols=22 Identities=27% Similarity=0.459 Sum_probs=19.0
Q ss_pred ccceeecCCCCccccccccCCCC
Q 035579 6 KLHHLNNSNTDSLEEMPLGIGKL 28 (814)
Q Consensus 6 ~L~~L~l~~~~~~~~lp~~i~~L 28 (814)
+||+||+++|+ ++.+|++|++|
T Consensus 1 ~L~~Ldls~n~-l~~ip~~~~~l 22 (22)
T PF00560_consen 1 NLEYLDLSGNN-LTSIPSSFSNL 22 (22)
T ss_dssp TESEEEETSSE-ESEEGTTTTT-
T ss_pred CccEEECCCCc-CEeCChhhcCC
Confidence 58999999998 99999988765
No 64
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=95.96 E-value=0.0052 Score=59.11 Aligned_cols=137 Identities=18% Similarity=0.173 Sum_probs=84.3
Q ss_pred hHhhcCCCCcceEeecccCCcccccc----cCCCCCCccEEEecCCCCceecCCC--------------CCCCCCcceEe
Q 035579 535 AERLDNNTSLETIGINFCENLKILPS----GLHNLRQLREITIQRCGNLVSFPEG--------------GLPCAKLSELR 596 (814)
Q Consensus 535 ~~~~~~l~~L~~L~L~~n~~~~~~~~----~~~~l~~L~~L~l~~~~~l~~~~~~--------------~~~l~~L~~L~ 596 (814)
...+.+|+.|+..+|++|-+....|. .+++-+.|++|.+++| .++.+..+ ..+-|.|++..
T Consensus 85 l~aLlkcp~l~~v~LSDNAfg~~~~e~L~d~is~~t~l~HL~l~Nn-GlGp~aG~rigkal~~la~nKKaa~kp~Le~vi 163 (388)
T COG5238 85 LKALLKCPRLQKVDLSDNAFGSEFPEELGDLISSSTDLVHLKLNNN-GLGPIAGGRIGKALFHLAYNKKAADKPKLEVVI 163 (388)
T ss_pred HHHHhcCCcceeeeccccccCcccchHHHHHHhcCCCceeEEeecC-CCCccchhHHHHHHHHHHHHhhhccCCCceEEE
Confidence 34566777888888888776654433 3556778888888877 44433211 22346788887
Q ss_pred eccccccccccc-----cccCCCCcceEEecC-ccC-----cccc--CCCCCceeEEEecCCcchhhhhhhcccccCCCC
Q 035579 597 IFQCERLEALPK-----GLHNLTSLQELTIGG-ALP-----SLEE--DGLPTNLHSLDIRGNMEIWKSMIERGRGFHRFS 663 (814)
Q Consensus 597 l~~~~~l~~lp~-----~~~~l~~L~~L~l~~-~~~-----~l~~--~~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~l~ 663 (814)
...| .+...|. .+..-..|+.+.+.. +|. .+.. ...+.+|+.|++..|..+..........++.++
T Consensus 164 cgrN-Rlengs~~~~a~~l~sh~~lk~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtft~~gS~~La~al~~W~ 242 (388)
T COG5238 164 CGRN-RLENGSKELSAALLESHENLKEVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFTLEGSRYLADALCEWN 242 (388)
T ss_pred eccc-hhccCcHHHHHHHHHhhcCceeEEeeecCcCcchhHHHHHHHHHHhCcceeeeccccchhhhhHHHHHHHhcccc
Confidence 7777 4444433 222225677777765 332 2211 234688888888888766654433334677888
Q ss_pred cccEEEEecC
Q 035579 664 SLRHLTIDGC 673 (814)
Q Consensus 664 ~L~~L~l~~~ 673 (814)
.|++|.+.+|
T Consensus 243 ~lrEL~lnDC 252 (388)
T COG5238 243 LLRELRLNDC 252 (388)
T ss_pred hhhhccccch
Confidence 8888888886
No 65
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=95.83 E-value=0.0021 Score=61.66 Aligned_cols=84 Identities=13% Similarity=0.110 Sum_probs=51.3
Q ss_pred cccccEEEEeccCCcch----hhHhhcCCCCcceEeecccCCcc---c-------ccccCCCCCCccEEEecCCCCceec
Q 035579 517 PATLESLSVYKCSKLES----IAERLDNNTSLETIGINFCENLK---I-------LPSGLHNLRQLREITIQRCGNLVSF 582 (814)
Q Consensus 517 ~~~L~~L~l~~~~~~~~----~~~~~~~l~~L~~L~L~~n~~~~---~-------~~~~~~~l~~L~~L~l~~~~~l~~~ 582 (814)
...+..+++++|.+-++ +...+.+-.+|+..+++.-.... . +.+.+-.||+|+..++++|..-...
T Consensus 29 ~d~~~evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd~ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNAfg~~~ 108 (388)
T COG5238 29 MDELVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSDAFTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNAFGSEF 108 (388)
T ss_pred hcceeEEeccCCcccHHHHHHHHHHHhhhcceeEeehhhhhhcccHHHHHHHHHHHHHHHhcCCcceeeeccccccCccc
Confidence 45677888888776544 34455566677777776632221 1 1234556788888888887544444
Q ss_pred CCC----CCCCCCcceEeeccc
Q 035579 583 PEG----GLPCAKLSELRIFQC 600 (814)
Q Consensus 583 ~~~----~~~l~~L~~L~l~~~ 600 (814)
|+. +.+-+.|++|.+++|
T Consensus 109 ~e~L~d~is~~t~l~HL~l~Nn 130 (388)
T COG5238 109 PEELGDLISSSTDLVHLKLNNN 130 (388)
T ss_pred chHHHHHHhcCCCceeEEeecC
Confidence 432 344567788888777
No 66
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.74 E-value=0.00062 Score=65.49 Aligned_cols=98 Identities=15% Similarity=0.168 Sum_probs=71.9
Q ss_pred cccEEEEeccCCcchhhHhhcCCCCcceEeecccCCcccccccCCCCCCccEEEecCCCCceecCC--CCCCCCCcceEe
Q 035579 519 TLESLSVYKCSKLESIAERLDNNTSLETIGINFCENLKILPSGLHNLRQLREITIQRCGNLVSFPE--GGLPCAKLSELR 596 (814)
Q Consensus 519 ~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~--~~~~l~~L~~L~ 596 (814)
+.+.|+.++|...+.- ....|+.|++|.|+-|++... ..+..|++|++|+|..| .+.++.+ .+.++++|+.|+
T Consensus 20 ~vkKLNcwg~~L~DIs--ic~kMp~lEVLsLSvNkIssL--~pl~rCtrLkElYLRkN-~I~sldEL~YLknlpsLr~LW 94 (388)
T KOG2123|consen 20 NVKKLNCWGCGLDDIS--ICEKMPLLEVLSLSVNKISSL--APLQRCTRLKELYLRKN-CIESLDELEYLKNLPSLRTLW 94 (388)
T ss_pred HhhhhcccCCCccHHH--HHHhcccceeEEeeccccccc--hhHHHHHHHHHHHHHhc-ccccHHHHHHHhcCchhhhHh
Confidence 5667777777655432 356789999999999998876 34778999999999987 5555543 345788999999
Q ss_pred eccccccccccc-----cccCCCCcceEEe
Q 035579 597 IFQCERLEALPK-----GLHNLTSLQELTI 621 (814)
Q Consensus 597 l~~~~~l~~lp~-----~~~~l~~L~~L~l 621 (814)
|..|+-.+.-+. -+..+|+|++||=
T Consensus 95 L~ENPCc~~ag~nYR~~VLR~LPnLkKLDn 124 (388)
T KOG2123|consen 95 LDENPCCGEAGQNYRRKVLRVLPNLKKLDN 124 (388)
T ss_pred hccCCcccccchhHHHHHHHHcccchhccC
Confidence 999976655433 2456778887763
No 67
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.08 E-value=0.00075 Score=64.91 Aligned_cols=34 Identities=18% Similarity=0.094 Sum_probs=14.7
Q ss_pred CCceeEEEecCCcchhhhhhhcccccCCCCcccEEEEecC
Q 035579 634 PTNLHSLDIRGNMEIWKSMIERGRGFHRFSSLRHLTIDGC 673 (814)
Q Consensus 634 ~~~L~~L~l~~n~~~~~~~~~~~~~l~~l~~L~~L~l~~~ 673 (814)
++.|+.|.|+-|.+.+. ..+..++.|++|+|..|
T Consensus 40 Mp~lEVLsLSvNkIssL------~pl~rCtrLkElYLRkN 73 (388)
T KOG2123|consen 40 MPLLEVLSLSVNKISSL------APLQRCTRLKELYLRKN 73 (388)
T ss_pred cccceeEEeeccccccc------hhHHHHHHHHHHHHHhc
Confidence 34444444444444333 22344444444444443
No 68
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=94.85 E-value=0.16 Score=44.99 Aligned_cols=37 Identities=19% Similarity=0.270 Sum_probs=13.9
Q ss_pred cCCCCCCccEEEecCCCCceecCC-CCCCCCCcceEeecc
Q 035579 561 GLHNLRQLREITIQRCGNLVSFPE-GGLPCAKLSELRIFQ 599 (814)
Q Consensus 561 ~~~~l~~L~~L~l~~~~~l~~~~~-~~~~l~~L~~L~l~~ 599 (814)
.|.++++|+.+.+.. .+..++. .+..+++|+.+.+..
T Consensus 7 ~F~~~~~l~~i~~~~--~~~~I~~~~F~~~~~l~~i~~~~ 44 (129)
T PF13306_consen 7 AFYNCSNLESITFPN--TIKKIGENAFSNCTSLKSINFPN 44 (129)
T ss_dssp TTTT-TT--EEEETS--T--EE-TTTTTT-TT-SEEEESS
T ss_pred HHhCCCCCCEEEECC--CeeEeChhhcccccccccccccc
Confidence 445555566555553 2334433 344444555555543
No 69
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=94.64 E-value=0.013 Score=56.50 Aligned_cols=39 Identities=26% Similarity=0.081 Sum_probs=21.2
Q ss_pred CCCceeEEEecCCcchhhhhhhcccccCCCCcccEEEEec
Q 035579 633 LPTNLHSLDIRGNMEIWKSMIERGRGFHRFSSLRHLTIDG 672 (814)
Q Consensus 633 ~~~~L~~L~l~~n~~~~~~~~~~~~~l~~l~~L~~L~l~~ 672 (814)
.+.+|.+|++.+|......- .....|.-+++|+.|+-..
T Consensus 114 ~l~nL~~Ldl~n~~~~~l~d-yre~vf~ll~~L~~LD~~d 152 (260)
T KOG2739|consen 114 ELENLKSLDLFNCSVTNLDD-YREKVFLLLPSLKYLDGCD 152 (260)
T ss_pred hhcchhhhhcccCCcccccc-HHHHHHHHhhhhccccccc
Confidence 34667777777775433110 0113456667777776655
No 70
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=94.60 E-value=0.16 Score=44.87 Aligned_cols=82 Identities=22% Similarity=0.288 Sum_probs=38.2
Q ss_pred hhcCCCCcceEeecccCCcccccccCCCCCCccEEEecCCCCceecCC-CCCCCCCcceEeeccccccccccc-cccCCC
Q 035579 537 RLDNNTSLETIGINFCENLKILPSGLHNLRQLREITIQRCGNLVSFPE-GGLPCAKLSELRIFQCERLEALPK-GLHNLT 614 (814)
Q Consensus 537 ~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~-~~~~l~~L~~L~l~~~~~l~~lp~-~~~~l~ 614 (814)
.|.++++|+.+.+.. .....-...+..+++|+.+.+.++ +..++. .+..+++++.+.+.. ....++. .+..++
T Consensus 7 ~F~~~~~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~~--~~~i~~~~F~~~~~l~~i~~~~--~~~~i~~~~F~~~~ 81 (129)
T PF13306_consen 7 AFYNCSNLESITFPN-TIKKIGENAFSNCTSLKSINFPNN--LTSIGDNAFSNCKSLESITFPN--NLKSIGDNAFSNCT 81 (129)
T ss_dssp TTTT-TT--EEEETS-T--EE-TTTTTT-TT-SEEEESST--TSCE-TTTTTT-TT-EEEEETS--TT-EE-TTTTTT-T
T ss_pred HHhCCCCCCEEEECC-CeeEeChhhccccccccccccccc--ccccceeeeecccccccccccc--cccccccccccccc
Confidence 355566666666653 333333455677777777777653 455544 455566777777754 2333322 344456
Q ss_pred CcceEEecC
Q 035579 615 SLQELTIGG 623 (814)
Q Consensus 615 ~L~~L~l~~ 623 (814)
+|+.+++..
T Consensus 82 ~l~~i~~~~ 90 (129)
T PF13306_consen 82 NLKNIDIPS 90 (129)
T ss_dssp TECEEEETT
T ss_pred cccccccCc
Confidence 666665544
No 71
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=94.37 E-value=0.022 Score=29.93 Aligned_cols=17 Identities=35% Similarity=0.518 Sum_probs=11.7
Q ss_pred cccceeecCCCCcccccc
Q 035579 5 IKLHHLNNSNTDSLEEMP 22 (814)
Q Consensus 5 ~~L~~L~l~~~~~~~~lp 22 (814)
++|++|++++|+ ++.+|
T Consensus 1 ~~L~~L~l~~n~-L~~lP 17 (17)
T PF13504_consen 1 PNLRTLDLSNNR-LTSLP 17 (17)
T ss_dssp TT-SEEEETSS---SSE-
T ss_pred CccCEEECCCCC-CCCCc
Confidence 479999999999 88887
No 72
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=94.08 E-value=0.024 Score=54.75 Aligned_cols=59 Identities=15% Similarity=0.088 Sum_probs=36.3
Q ss_pred ccccEEEeecc--CCccccccccCCCCCcceEeeecCCC--CcccCCCCCCCCCcEEEecccC
Q 035579 365 CRLEYLILSCC--EGLVKLPQSSLSLCSLREIGIYKCSS--LVSFPEVALPSKLEKIHIGACD 423 (814)
Q Consensus 365 ~~L~~L~L~~~--~~~~~~~~~~~~l~~L~~L~L~~~~~--l~~~~~~~~~~~L~~L~l~~~~ 423 (814)
++|++|.++.| +....++.....+|+|+++++++|.. +.++.++..+.+|..|++.+|.
T Consensus 65 p~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lstl~pl~~l~nL~~Ldl~n~~ 127 (260)
T KOG2739|consen 65 PKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLSTLRPLKELENLKSLDLFNCS 127 (260)
T ss_pred chhhhhcccCCcccccccceehhhhCCceeEEeecCCccccccccchhhhhcchhhhhcccCC
Confidence 67777777777 44444444455567777777777532 2334445556667777777665
No 73
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=92.33 E-value=0.029 Score=51.99 Aligned_cols=86 Identities=21% Similarity=0.371 Sum_probs=51.4
Q ss_pred ceeEEEecCCcchhhhhhhcccccCCCCcccEEEEecCCCCCccCCccccccCCCCCCCCCcceEEeccCCCCccccc-c
Q 035579 636 NLHSLDIRGNMEIWKSMIERGRGFHRFSSLRHLTIDGCDDDMVSFPPEDKRLGTALPLPASLTDLEIGRFPNLERLSS-S 714 (814)
Q Consensus 636 ~L~~L~l~~n~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~l~~i~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~-~ 714 (814)
.++.++-+++.+..... ..+..++.++.|.+.+|. .+ .+.. +...-...++|+.|+|++|+.+++-.- +
T Consensus 102 ~IeaVDAsds~I~~eGl----e~L~~l~~i~~l~l~~ck-~~---dD~~--L~~l~~~~~~L~~L~lsgC~rIT~~GL~~ 171 (221)
T KOG3864|consen 102 KIEAVDASDSSIMYEGL----EHLRDLRSIKSLSLANCK-YF---DDWC--LERLGGLAPSLQDLDLSGCPRITDGGLAC 171 (221)
T ss_pred eEEEEecCCchHHHHHH----HHHhccchhhhheecccc-ch---hhHH--HHHhcccccchheeeccCCCeechhHHHH
Confidence 46677777777666555 456777777777777752 22 1111 000112456777777777777775543 6
Q ss_pred cccCCCCCeEEecCCCC
Q 035579 715 IVDLQNLTELCLRDCPK 731 (814)
Q Consensus 715 ~~~l~~L~~L~l~~c~~ 731 (814)
+..+++|+.|.+++.+.
T Consensus 172 L~~lknLr~L~l~~l~~ 188 (221)
T KOG3864|consen 172 LLKLKNLRRLHLYDLPY 188 (221)
T ss_pred HHHhhhhHHHHhcCchh
Confidence 66777777777766443
No 74
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=91.58 E-value=0.15 Score=26.79 Aligned_cols=16 Identities=38% Similarity=0.488 Sum_probs=6.0
Q ss_pred CCCeEEecCCCCCCccC
Q 035579 720 NLTELCLRDCPKLKYFP 736 (814)
Q Consensus 720 ~L~~L~l~~c~~l~~lp 736 (814)
+|+.|++++|. ++++|
T Consensus 2 ~L~~L~l~~n~-L~~lP 17 (17)
T PF13504_consen 2 NLRTLDLSNNR-LTSLP 17 (17)
T ss_dssp T-SEEEETSS---SSE-
T ss_pred ccCEEECCCCC-CCCCc
Confidence 45555555543 44443
No 75
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=90.67 E-value=0.12 Score=29.28 Aligned_cols=20 Identities=40% Similarity=0.360 Sum_probs=11.1
Q ss_pred cccEEEeeccCCccccccccC
Q 035579 366 RLEYLILSCCEGLVKLPQSSL 386 (814)
Q Consensus 366 ~L~~L~L~~~~~~~~~~~~~~ 386 (814)
+|++|++++|.+. .+|..+.
T Consensus 1 ~L~~Ldls~n~l~-~ip~~~~ 20 (22)
T PF00560_consen 1 NLEYLDLSGNNLT-SIPSSFS 20 (22)
T ss_dssp TESEEEETSSEES-EEGTTTT
T ss_pred CccEEECCCCcCE-eCChhhc
Confidence 3566666666543 5555443
No 76
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=90.08 E-value=0.18 Score=29.89 Aligned_cols=21 Identities=38% Similarity=0.574 Sum_probs=18.7
Q ss_pred CcccceeecCCCCccccccccC
Q 035579 4 LIKLHHLNNSNTDSLEEMPLGI 25 (814)
Q Consensus 4 l~~L~~L~l~~~~~~~~lp~~i 25 (814)
|++|++|+|++|. ++.+|+++
T Consensus 1 L~~L~~L~L~~N~-l~~lp~~~ 21 (26)
T smart00370 1 LPNLRELDLSNNQ-LSSLPPGA 21 (26)
T ss_pred CCCCCEEECCCCc-CCcCCHHH
Confidence 5789999999999 99999874
No 77
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=90.08 E-value=0.18 Score=29.89 Aligned_cols=21 Identities=38% Similarity=0.574 Sum_probs=18.7
Q ss_pred CcccceeecCCCCccccccccC
Q 035579 4 LIKLHHLNNSNTDSLEEMPLGI 25 (814)
Q Consensus 4 l~~L~~L~l~~~~~~~~lp~~i 25 (814)
|++|++|+|++|. ++.+|+++
T Consensus 1 L~~L~~L~L~~N~-l~~lp~~~ 21 (26)
T smart00369 1 LPNLRELDLSNNQ-LSSLPPGA 21 (26)
T ss_pred CCCCCEEECCCCc-CCcCCHHH
Confidence 5789999999999 99999874
No 78
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=89.38 E-value=0.06 Score=49.94 Aligned_cols=81 Identities=14% Similarity=0.184 Sum_probs=36.4
Q ss_pred cccEEEeeccCCccccccccCCCCCcceEeeecCCCCcccC--CCC-CCCCCcEEEecccCCCCCCchhhhcCCCCCccE
Q 035579 366 RLEYLILSCCEGLVKLPQSSLSLCSLREIGIYKCSSLVSFP--EVA-LPSKLEKIHIGACDALKSLPEAWMCDTNSSLEI 442 (814)
Q Consensus 366 ~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~L~~~~~l~~~~--~~~-~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~ 442 (814)
.++.++-+++.+..+--+.+..++.++.|.+.+|..+.+.. .++ ..++|+.|++++|..+++..-... ..+++|+.
T Consensus 102 ~IeaVDAsds~I~~eGle~L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~L-~~lknLr~ 180 (221)
T KOG3864|consen 102 KIEAVDASDSSIMYEGLEHLRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLACL-LKLKNLRR 180 (221)
T ss_pred eEEEEecCCchHHHHHHHHHhccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHHHHH-HHhhhhHH
Confidence 34555555555444433344555555566665555443321 111 244555555555544443322222 33444444
Q ss_pred EEEec
Q 035579 443 LYIEG 447 (814)
Q Consensus 443 L~l~~ 447 (814)
|.+.+
T Consensus 181 L~l~~ 185 (221)
T KOG3864|consen 181 LHLYD 185 (221)
T ss_pred HHhcC
Confidence 44443
No 79
>smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily.
Probab=78.87 E-value=1.3 Score=26.30 Aligned_cols=15 Identities=40% Similarity=0.689 Sum_probs=7.5
Q ss_pred CCCCeEEecCCCCCC
Q 035579 719 QNLTELCLRDCPKLK 733 (814)
Q Consensus 719 ~~L~~L~l~~c~~l~ 733 (814)
++|++|++++|++++
T Consensus 2 ~~L~~L~l~~C~~it 16 (26)
T smart00367 2 PNLRELDLSGCTNIT 16 (26)
T ss_pred CCCCEeCCCCCCCcC
Confidence 445555555554444
No 80
>smart00365 LRR_SD22 Leucine-rich repeat, SDS22-like subfamily.
Probab=70.67 E-value=3 Score=24.77 Aligned_cols=17 Identities=24% Similarity=0.468 Sum_probs=14.2
Q ss_pred CcccceeecCCCCccccc
Q 035579 4 LIKLHHLNNSNTDSLEEM 21 (814)
Q Consensus 4 l~~L~~L~l~~~~~~~~l 21 (814)
+++|++|+++.|. |+.+
T Consensus 1 L~~L~~L~L~~Nk-I~~I 17 (26)
T smart00365 1 LTNLEELDLSQNK-IKKI 17 (26)
T ss_pred CCccCEEECCCCc-ccee
Confidence 5789999999998 7654
No 81
>smart00364 LRR_BAC Leucine-rich repeats, bacterial type.
Probab=66.09 E-value=3.8 Score=24.25 Aligned_cols=17 Identities=29% Similarity=0.509 Sum_probs=8.6
Q ss_pred CCcceEEeccCCCCcccc
Q 035579 695 ASLTDLEIGRFPNLERLS 712 (814)
Q Consensus 695 ~~L~~L~l~~~~~l~~l~ 712 (814)
++|+.|++++ |+++++|
T Consensus 2 ~~L~~L~vs~-N~Lt~LP 18 (26)
T smart00364 2 PSLKELNVSN-NQLTSLP 18 (26)
T ss_pred cccceeecCC-CccccCc
Confidence 3445555555 4555555
No 82
>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A ....
Probab=57.80 E-value=4.9 Score=23.08 Aligned_cols=16 Identities=25% Similarity=0.320 Sum_probs=10.8
Q ss_pred CcccceeecCCCCcccc
Q 035579 4 LIKLHHLNNSNTDSLEE 20 (814)
Q Consensus 4 l~~L~~L~l~~~~~~~~ 20 (814)
+++|++||+++|. ++.
T Consensus 1 ~~~L~~L~l~~n~-i~~ 16 (24)
T PF13516_consen 1 NPNLETLDLSNNQ-ITD 16 (24)
T ss_dssp -TT-SEEE-TSSB-EHH
T ss_pred CCCCCEEEccCCc-CCH
Confidence 4789999999998 654
No 83
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=54.47 E-value=8 Score=42.13 Aligned_cols=70 Identities=17% Similarity=0.149 Sum_probs=34.6
Q ss_pred hcCCCCCeEEEecCCCcccchhhHHHHHHHHhhhccccccEEEeeccCCccccccccC--CCCCcceEeeecCCCCccc
Q 035579 329 QDICSLRRLTIRSCPKLQSLVAEEEKDQQQQLCELSCRLEYLILSCCEGLVKLPQSSL--SLCSLREIGIYKCSSLVSF 405 (814)
Q Consensus 329 ~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~~~~~--~l~~L~~L~L~~~~~l~~~ 405 (814)
.+.+.+..++++++ ++..+.. +..++...|+|+.|+|++|........++. +...|++|-+.||+..+.+
T Consensus 215 ~n~p~i~sl~lsnN-rL~~Ld~------~sslsq~apklk~L~LS~N~~~~~~~~el~K~k~l~Leel~l~GNPlc~tf 286 (585)
T KOG3763|consen 215 ENFPEILSLSLSNN-RLYHLDA------LSSLSQIAPKLKTLDLSHNHSKISSESELDKLKGLPLEELVLEGNPLCTTF 286 (585)
T ss_pred cCCcceeeeecccc-hhhchhh------hhHHHHhcchhheeecccchhhhcchhhhhhhcCCCHHHeeecCCccccch
Confidence 35566666666663 5555533 333344447777777777732111111111 2234556666665544433
No 84
>smart00368 LRR_RI Leucine rich repeat, ribonuclease inhibitor type.
Probab=46.86 E-value=12 Score=22.52 Aligned_cols=15 Identities=33% Similarity=0.415 Sum_probs=12.3
Q ss_pred cccceeecCCCCcccc
Q 035579 5 IKLHHLNNSNTDSLEE 20 (814)
Q Consensus 5 ~~L~~L~l~~~~~~~~ 20 (814)
++|++|||++|. +..
T Consensus 2 ~~L~~LdL~~N~-i~~ 16 (28)
T smart00368 2 PSLRELDLSNNK-LGD 16 (28)
T ss_pred CccCEEECCCCC-CCH
Confidence 579999999998 643
No 85
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=36.31 E-value=1.1 Score=42.59 Aligned_cols=84 Identities=12% Similarity=0.102 Sum_probs=59.9
Q ss_pred CCCCceeEEEecCCcchhhhhhhcccccCCCCcccEEEEecCCCCCccCCccccccCCCCCCCCCcceEEeccCCCCccc
Q 035579 632 GLPTNLHSLDIRGNMEIWKSMIERGRGFHRFSSLRHLTIDGCDDDMVSFPPEDKRLGTALPLPASLTDLEIGRFPNLERL 711 (814)
Q Consensus 632 ~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~l~~i~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l 711 (814)
..+...+.||++.|...... ..|+-++.|..|+++.| .+..+|.+.+ ....++.+++.. |..+..
T Consensus 39 ~~~kr~tvld~~s~r~vn~~-----~n~s~~t~~~rl~~skn--q~~~~~~d~~-------q~~e~~~~~~~~-n~~~~~ 103 (326)
T KOG0473|consen 39 ASFKRVTVLDLSSNRLVNLG-----KNFSILTRLVRLDLSKN--QIKFLPKDAK-------QQRETVNAASHK-NNHSQQ 103 (326)
T ss_pred hccceeeeehhhhhHHHhhc-----cchHHHHHHHHHhccHh--hHhhChhhHH-------HHHHHHHHHhhc-cchhhC
Confidence 34567777888887655432 34666778888888876 7777777763 345666667766 778888
Q ss_pred ccccccCCCCCeEEecCCC
Q 035579 712 SSSIVDLQNLTELCLRDCP 730 (814)
Q Consensus 712 ~~~~~~l~~L~~L~l~~c~ 730 (814)
|...+..+.+++++..+.+
T Consensus 104 p~s~~k~~~~k~~e~k~~~ 122 (326)
T KOG0473|consen 104 PKSQKKEPHPKKNEQKKTE 122 (326)
T ss_pred CccccccCCcchhhhccCc
Confidence 8888888888888887754
No 86
>PF05725 FNIP: FNIP Repeat; InterPro: IPR008615 This repeat is approximately 22 residues long and is only found in Dictyostelium discoideum (Slime mould). It appears to be related to IPR001611 from INTERPRO. The alignment consists of two tandem repeats. It is termed the FNIP repeat after the pattern of conserved residues.
Probab=33.38 E-value=78 Score=21.52 Aligned_cols=32 Identities=25% Similarity=0.195 Sum_probs=18.8
Q ss_pred CCCCeEEecCCCCCCccCCCCCcCCccEEeecC
Q 035579 719 QNLTELCLRDCPKLKYFPEKGLPSSLLRLSILS 751 (814)
Q Consensus 719 ~~L~~L~l~~c~~l~~lp~~~l~~~L~~L~i~~ 751 (814)
+++++|.+.+. -=+.+....+|+++++|.+.+
T Consensus 12 ~~l~~L~~g~~-fn~~i~~~~lP~sl~~L~fg~ 43 (44)
T PF05725_consen 12 SSLKSLIFGSS-FNQPIEPGSLPNSLKSLSFGY 43 (44)
T ss_pred CCCeEEEECCc-cCccCCCCccCCCceEEEeeC
Confidence 46777777331 223444555677777777654
No 87
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=32.06 E-value=1.7 Score=41.51 Aligned_cols=83 Identities=6% Similarity=0.075 Sum_probs=49.7
Q ss_pred hcCCCCcceEeecccCCcccccccCCCCCCccEEEecCCCCceecCCCCCCCCCcceEeeccccccccccccccCCCCcc
Q 035579 538 LDNNTSLETIGINFCENLKILPSGLHNLRQLREITIQRCGNLVSFPEGGLPCAKLSELRIFQCERLEALPKGLHNLTSLQ 617 (814)
Q Consensus 538 ~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~~~~l~~lp~~~~~l~~L~ 617 (814)
+......+.||++.|..... ...++-++.|..|+++.| .+..+|..+.....++.+++..| .....|.++...+.++
T Consensus 38 i~~~kr~tvld~~s~r~vn~-~~n~s~~t~~~rl~~skn-q~~~~~~d~~q~~e~~~~~~~~n-~~~~~p~s~~k~~~~k 114 (326)
T KOG0473|consen 38 IASFKRVTVLDLSSNRLVNL-GKNFSILTRLVRLDLSKN-QIKFLPKDAKQQRETVNAASHKN-NHSQQPKSQKKEPHPK 114 (326)
T ss_pred hhccceeeeehhhhhHHHhh-ccchHHHHHHHHHhccHh-hHhhChhhHHHHHHHHHHHhhcc-chhhCCccccccCCcc
Confidence 44455556666666544321 123445666677777765 56666666666666666666655 5666677777766666
Q ss_pred eEEecC
Q 035579 618 ELTIGG 623 (814)
Q Consensus 618 ~L~l~~ 623 (814)
.++..+
T Consensus 115 ~~e~k~ 120 (326)
T KOG0473|consen 115 KNEQKK 120 (326)
T ss_pred hhhhcc
Confidence 666655
No 88
>KOG4308 consensus LRR-containing protein [Function unknown]
Probab=28.12 E-value=0.47 Score=52.11 Aligned_cols=83 Identities=17% Similarity=0.087 Sum_probs=47.3
Q ss_pred ccEEEEeccCCcch----hhHhhcCCCCcceEeecccCCccc----ccccCCCC-CCccEEEecCCCCcee----cCCCC
Q 035579 520 LESLSVYKCSKLES----IAERLDNNTSLETIGINFCENLKI----LPSGLHNL-RQLREITIQRCGNLVS----FPEGG 586 (814)
Q Consensus 520 L~~L~l~~~~~~~~----~~~~~~~l~~L~~L~L~~n~~~~~----~~~~~~~l-~~L~~L~l~~~~~l~~----~~~~~ 586 (814)
+..+.+.+|..... +...+...+.|+.|++++|.+... +-..+... ..++.|++..|..... +...+
T Consensus 89 l~~L~L~~~~l~~~~~~~l~~~l~t~~~L~~L~l~~n~l~~~g~~~l~~~l~~~~~~l~~L~l~~c~l~~~g~~~l~~~L 168 (478)
T KOG4308|consen 89 LLHLSLANNRLGDRGAEELAQALKTLPTLGQLDLSGNNLGDEGARLLCEGLRLPQCLLQTLELVSCSLTSEGAAPLAAVL 168 (478)
T ss_pred HHHhhhhhCccccchHHHHHHHhcccccHhHhhcccCCCccHhHHHHHhhcccchHHHHHHHhhcccccccchHHHHHHH
Confidence 67777777765443 444566777888888888877632 11222222 4566666666632221 12223
Q ss_pred CCCCCcceEeeccccc
Q 035579 587 LPCAKLSELRIFQCER 602 (814)
Q Consensus 587 ~~l~~L~~L~l~~~~~ 602 (814)
.....++.++++.|..
T Consensus 169 ~~~~~l~~l~l~~n~l 184 (478)
T KOG4308|consen 169 EKNEHLTELDLSLNGL 184 (478)
T ss_pred hcccchhHHHHHhccc
Confidence 3356677777777644
No 89
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=26.81 E-value=37 Score=37.29 Aligned_cols=83 Identities=17% Similarity=0.105 Sum_probs=40.3
Q ss_pred CceeEEEecCCcchhhhhhhcccccCCCCcccEEEEecCCCCCccCCccccccCCCCCCCCCcceEEeccCCCCccccc-
Q 035579 635 TNLHSLDIRGNMEIWKSMIERGRGFHRFSSLRHLTIDGCDDDMVSFPPEDKRLGTALPLPASLTDLEIGRFPNLERLSS- 713 (814)
Q Consensus 635 ~~L~~L~l~~n~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~l~~i~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~- 713 (814)
+.+..+.+++|++....... ..-...|.|+.|+|++|...+..-++-.. .....|++|.+.+++--+....
T Consensus 218 p~i~sl~lsnNrL~~Ld~~s--slsq~apklk~L~LS~N~~~~~~~~el~K------~k~l~Leel~l~GNPlc~tf~~~ 289 (585)
T KOG3763|consen 218 PEILSLSLSNNRLYHLDALS--SLSQIAPKLKTLDLSHNHSKISSESELDK------LKGLPLEELVLEGNPLCTTFSDR 289 (585)
T ss_pred cceeeeecccchhhchhhhh--HHHHhcchhheeecccchhhhcchhhhhh------hcCCCHHHeeecCCccccchhhh
Confidence 55555666666544332211 22344567777777775222222222110 1245677777777544443311
Q ss_pred --cc----ccCCCCCeEE
Q 035579 714 --SI----VDLQNLTELC 725 (814)
Q Consensus 714 --~~----~~l~~L~~L~ 725 (814)
.+ ..||+|..||
T Consensus 290 s~yv~~i~~~FPKL~~LD 307 (585)
T KOG3763|consen 290 SEYVSAIRELFPKLLRLD 307 (585)
T ss_pred HHHHHHHHHhcchheeec
Confidence 12 2567776665
Done!