Query 035579
Match_columns 814
No_of_seqs 456 out of 4089
Neff 10.3
Searched_HMMs 29240
Date Mon Mar 25 06:31:06 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/035579.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/035579hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3rgz_A Protein brassinosteroid 100.0 1.5E-50 5.1E-55 476.5 23.0 644 5-777 50-766 (768)
2 3rgz_A Protein brassinosteroid 100.0 8.2E-46 2.8E-50 436.2 26.0 581 48-754 71-716 (768)
3 1ziw_A TOLL-like receptor 3; i 100.0 3.5E-40 1.2E-44 385.3 41.0 373 331-755 221-622 (680)
4 1ziw_A TOLL-like receptor 3; i 100.0 1.5E-39 5.1E-44 379.9 34.0 584 7-732 6-622 (680)
5 3t6q_A CD180 antigen; protein- 100.0 3.3E-37 1.1E-41 355.3 29.1 297 365-753 254-558 (606)
6 3vq2_A TLR4, TOLL-like recepto 100.0 1.8E-36 6.1E-41 349.1 32.9 514 122-754 15-557 (606)
7 3t6q_A CD180 antigen; protein- 100.0 9.5E-36 3.3E-40 343.0 35.8 389 306-786 152-562 (606)
8 3vq2_A TLR4, TOLL-like recepto 100.0 1.6E-34 5.3E-39 332.9 34.8 522 145-785 13-559 (606)
9 3j0a_A TOLL-like receptor 5; m 100.0 9.4E-33 3.2E-37 328.5 42.3 522 122-754 8-559 (844)
10 3j0a_A TOLL-like receptor 5; m 100.0 4.3E-32 1.5E-36 322.8 36.5 280 365-673 266-557 (844)
11 2z81_A CD282 antigen, TOLL-lik 100.0 2.2E-32 7.7E-37 311.0 32.4 471 124-730 11-508 (549)
12 2z63_A TOLL-like receptor 4, v 100.0 5.8E-31 2E-35 301.1 33.9 497 124-736 13-535 (570)
13 2z81_A CD282 antigen, TOLL-lik 100.0 4.9E-31 1.7E-35 299.9 27.8 391 324-754 90-509 (549)
14 2z63_A TOLL-like receptor 4, v 100.0 2.5E-31 8.4E-36 304.1 25.3 262 366-673 258-528 (570)
15 2z7x_B TOLL-like receptor 1, v 100.0 3.3E-31 1.1E-35 299.0 24.3 442 121-753 3-479 (520)
16 4eco_A Uncharacterized protein 100.0 9.2E-31 3.2E-35 300.7 25.1 347 375-755 193-600 (636)
17 4ecn_A Leucine-rich repeat pro 100.0 3.9E-30 1.3E-34 299.7 29.7 374 221-711 444-842 (876)
18 4eco_A Uncharacterized protein 100.0 2.2E-31 7.6E-36 305.9 17.8 359 365-756 206-633 (636)
19 2z7x_B TOLL-like receptor 1, v 100.0 3E-30 1E-34 291.2 23.0 431 83-649 21-482 (520)
20 4ecn_A Leucine-rich repeat pro 100.0 5.3E-30 1.8E-34 298.5 24.0 341 381-754 440-839 (876)
21 4g8a_A TOLL-like receptor 4; l 100.0 5.4E-28 1.9E-32 280.5 36.9 517 127-753 40-578 (635)
22 1jl5_A Outer protein YOPM; leu 100.0 1.2E-29 4.2E-34 278.2 17.8 296 365-753 131-427 (454)
23 3a79_B TLR6, VLRB.59, TOLL-lik 100.0 6.6E-28 2.3E-32 274.2 29.1 102 117-236 30-132 (562)
24 4g8a_A TOLL-like receptor 4; l 100.0 5.9E-28 2E-32 280.2 29.1 198 519-730 372-578 (635)
25 3a79_B TLR6, VLRB.59, TOLL-lik 100.0 2.2E-27 7.5E-32 269.9 26.7 127 518-647 377-509 (562)
26 1jl5_A Outer protein YOPM; leu 99.9 1.2E-26 4E-31 254.5 22.8 361 295-753 46-407 (454)
27 3v47_A TOLL-like receptor 5B a 99.9 1E-26 3.5E-31 257.7 22.3 314 302-646 74-406 (455)
28 1o6v_A Internalin A; bacterial 99.9 6.1E-26 2.1E-30 251.5 27.2 347 330-736 44-391 (466)
29 1o6v_A Internalin A; bacterial 99.9 5E-25 1.7E-29 244.1 29.0 341 365-754 46-387 (466)
30 3v47_A TOLL-like receptor 5B a 99.9 1.9E-25 6.4E-30 247.5 23.7 130 332-471 30-164 (455)
31 4fmz_A Internalin; leucine ric 99.9 5.5E-25 1.9E-29 234.3 23.8 303 329-730 41-344 (347)
32 2id5_A Lingo-1, leucine rich r 99.9 8.7E-25 3E-29 243.5 25.6 294 365-709 32-333 (477)
33 4fmz_A Internalin; leucine ric 99.9 9E-25 3.1E-29 232.6 24.4 299 365-753 44-344 (347)
34 3bz5_A Internalin-J, INLJ; leu 99.9 5.7E-25 1.9E-29 241.3 19.2 101 114-236 38-138 (457)
35 3o6n_A APL1; leucine-rich repe 99.9 1.9E-24 6.5E-29 233.9 23.0 307 330-754 43-351 (390)
36 3bz5_A Internalin-J, INLJ; leu 99.9 1.1E-23 3.6E-28 231.3 25.7 317 328-736 38-355 (457)
37 3o6n_A APL1; leucine-rich repe 99.9 1.4E-23 4.7E-28 227.1 24.0 310 306-652 44-356 (390)
38 3oja_B Anopheles plasmodium-re 99.9 1.2E-23 4E-28 240.3 22.5 307 330-754 49-357 (597)
39 2id5_A Lingo-1, leucine rich r 99.9 3.3E-23 1.1E-27 230.7 25.6 291 332-673 32-330 (477)
40 3oja_B Anopheles plasmodium-re 99.9 6.2E-23 2.1E-27 234.3 23.8 310 306-652 50-362 (597)
41 1xku_A Decorin; proteoglycan, 99.9 5.9E-21 2E-25 201.3 25.8 288 365-729 31-329 (330)
42 2ft3_A Biglycan; proteoglycan, 99.9 6E-21 2.1E-25 201.3 22.4 286 366-729 34-330 (332)
43 1xku_A Decorin; proteoglycan, 99.9 1.1E-20 3.7E-25 199.2 23.1 104 332-448 52-155 (330)
44 1ogq_A PGIP-2, polygalacturona 99.9 9.5E-22 3.2E-26 205.1 12.5 247 495-756 51-305 (313)
45 2ft3_A Biglycan; proteoglycan, 99.9 9.2E-21 3.2E-25 199.9 20.3 128 542-673 193-330 (332)
46 4fcg_A Uncharacterized protein 99.9 1.3E-20 4.6E-25 197.5 20.3 229 365-623 81-310 (328)
47 1ogq_A PGIP-2, polygalacturona 99.9 1.8E-21 6.1E-26 203.0 12.7 82 365-448 50-135 (313)
48 3ogk_B Coronatine-insensitive 99.9 4.9E-22 1.7E-26 228.0 9.1 113 328-449 188-304 (592)
49 4fcg_A Uncharacterized protein 99.8 6.1E-21 2.1E-25 200.1 16.1 218 518-751 81-310 (328)
50 1z7x_W Ribonuclease inhibitor; 99.8 1.1E-22 3.7E-27 225.8 2.7 226 519-753 171-438 (461)
51 3ogk_B Coronatine-insensitive 99.8 1.1E-21 3.6E-26 225.2 8.3 402 302-735 71-528 (592)
52 3zyj_A Leucine-rich repeat-con 99.8 4.3E-19 1.5E-23 194.8 23.3 180 536-729 106-289 (440)
53 2z80_A TOLL-like receptor 2, v 99.8 2.5E-19 8.5E-24 190.7 19.8 274 388-753 30-312 (353)
54 2z80_A TOLL-like receptor 2, v 99.8 2.2E-19 7.6E-24 191.1 18.5 277 331-704 30-310 (353)
55 3zyi_A Leucine-rich repeat-con 99.8 6.7E-19 2.3E-23 194.0 22.7 179 538-730 119-301 (452)
56 1z7x_W Ribonuclease inhibitor; 99.8 8.8E-22 3E-26 218.4 -1.0 116 326-449 50-181 (461)
57 3zyi_A Leucine-rich repeat-con 99.8 6.6E-19 2.3E-23 194.1 20.6 220 516-753 73-301 (452)
58 2p1m_B Transport inhibitor res 99.8 3.9E-22 1.3E-26 229.0 -5.7 37 634-673 455-491 (594)
59 3g06_A SSPH2 (leucine-rich rep 99.8 3.2E-18 1.1E-22 193.1 25.9 256 365-730 40-295 (622)
60 3zyj_A Leucine-rich repeat-con 99.8 9.3E-19 3.2E-23 192.2 20.3 220 516-753 62-290 (440)
61 3o53_A Protein LRIM1, AGAP0063 99.8 6.8E-20 2.3E-24 191.6 10.5 235 365-672 34-271 (317)
62 2p1m_B Transport inhibitor res 99.8 1.2E-21 3.9E-26 225.1 -4.6 122 327-449 61-195 (594)
63 2z66_A Variable lymphocyte rec 99.8 1.2E-18 4.1E-23 181.5 16.4 222 517-753 27-259 (306)
64 2z66_A Variable lymphocyte rec 99.8 8.2E-18 2.8E-22 175.2 20.9 176 520-730 80-259 (306)
65 3g06_A SSPH2 (leucine-rich rep 99.8 1.9E-17 6.5E-22 186.8 25.1 254 390-754 41-296 (622)
66 3oja_A Leucine-rich immune mol 99.8 1.1E-18 3.6E-23 193.3 14.3 242 357-671 26-270 (487)
67 1ozn_A Reticulon 4 receptor; N 99.8 4.7E-18 1.6E-22 175.0 17.6 201 517-753 31-236 (285)
68 3o53_A Protein LRIM1, AGAP0063 99.8 1.4E-18 4.9E-23 181.6 13.9 215 516-755 32-250 (317)
69 1ozn_A Reticulon 4 receptor; N 99.8 8.4E-18 2.9E-22 173.1 18.0 223 521-786 14-240 (285)
70 2xwt_C Thyrotropin receptor; s 99.8 6.7E-18 2.3E-22 168.8 16.0 198 543-755 32-239 (239)
71 3oja_A Leucine-rich immune mol 99.7 1.2E-17 4.1E-22 184.9 15.6 214 516-755 32-250 (487)
72 1wwl_A Monocyte differentiatio 99.7 1.8E-18 6.3E-23 180.3 8.1 105 329-449 40-160 (312)
73 1wwl_A Monocyte differentiatio 99.7 3E-18 1E-22 178.6 9.4 220 520-753 65-307 (312)
74 2z62_A TOLL-like receptor 4, v 99.7 4.9E-17 1.7E-21 166.4 16.0 199 517-729 27-234 (276)
75 1p9a_G Platelet glycoprotein I 99.7 9.9E-17 3.4E-21 164.7 16.9 79 542-623 31-109 (290)
76 2xwt_C Thyrotropin receptor; s 99.7 8.5E-17 2.9E-21 160.7 15.9 199 516-731 29-238 (239)
77 1p9a_G Platelet glycoprotein I 99.7 3.1E-16 1.1E-20 161.0 18.6 198 538-754 6-207 (290)
78 2z62_A TOLL-like receptor 4, v 99.7 1.4E-16 4.7E-21 163.1 15.7 206 532-753 20-235 (276)
79 2o6q_A Variable lymphocyte rec 99.7 7.6E-16 2.6E-20 156.8 18.0 194 520-753 18-216 (270)
80 4ay9_X Follicle-stimulating ho 99.7 2E-15 6.8E-20 160.0 21.3 241 392-728 12-255 (350)
81 2o6q_A Variable lymphocyte rec 99.7 1.7E-15 5.9E-20 154.1 20.0 195 568-785 18-219 (270)
82 4glp_A Monocyte differentiatio 99.7 1.3E-16 4.4E-21 166.2 10.5 202 541-753 90-305 (310)
83 1h6u_A Internalin H; cell adhe 99.7 5.2E-16 1.8E-20 161.0 14.2 194 517-737 40-234 (308)
84 1h6u_A Internalin H; cell adhe 99.6 8.3E-16 2.9E-20 159.5 14.1 192 494-712 41-233 (308)
85 4glp_A Monocyte differentiatio 99.6 6.5E-16 2.2E-20 160.8 12.6 222 494-733 64-307 (310)
86 4ay9_X Follicle-stimulating ho 99.6 4.1E-15 1.4E-19 157.6 18.5 219 517-751 29-255 (350)
87 3rfs_A Internalin B, repeat mo 99.6 5.2E-16 1.8E-20 158.1 9.4 86 537-623 128-214 (272)
88 3rfs_A Internalin B, repeat mo 99.6 8E-15 2.8E-19 149.3 15.6 92 518-616 157-248 (272)
89 2ast_B S-phase kinase-associat 99.6 4E-16 1.4E-20 164.8 2.7 200 542-752 70-282 (336)
90 3m19_A Variable lymphocyte rec 99.6 4.6E-14 1.6E-18 141.8 16.9 173 543-753 15-190 (251)
91 3m19_A Variable lymphocyte rec 99.5 6.3E-14 2.2E-18 140.8 16.2 170 520-729 16-189 (251)
92 2ast_B S-phase kinase-associat 99.5 1.9E-15 6.6E-20 159.6 4.0 107 517-623 92-204 (336)
93 1h6t_A Internalin B; cell adhe 99.5 2.7E-14 9.1E-19 146.7 11.3 152 562-736 64-216 (291)
94 2ca6_A RAN GTPase-activating p 99.5 2.4E-15 8.1E-20 162.0 2.6 210 517-735 59-318 (386)
95 3goz_A Leucine-rich repeat-con 99.5 1.5E-15 5.2E-20 161.8 -0.9 227 515-753 19-295 (362)
96 1h6t_A Internalin B; cell adhe 99.5 1.3E-13 4.3E-18 141.6 13.0 169 562-753 42-211 (291)
97 3goz_A Leucine-rich repeat-con 99.5 7.1E-15 2.4E-19 156.6 3.8 120 323-449 13-149 (362)
98 2ca6_A RAN GTPase-activating p 99.5 2.6E-15 8.8E-20 161.8 0.3 226 517-753 31-314 (386)
99 3cvr_A Invasion plasmid antige 99.5 2E-13 6.8E-18 152.0 15.1 180 519-729 60-240 (571)
100 3cvr_A Invasion plasmid antige 99.5 2.3E-13 7.9E-18 151.5 15.5 184 495-716 60-251 (571)
101 1m9s_A Internalin B; cell inva 99.4 1.7E-13 5.7E-18 154.5 11.3 142 518-673 43-185 (605)
102 1m9s_A Internalin B; cell inva 99.4 1.6E-13 5.3E-18 154.8 9.0 191 520-737 23-214 (605)
103 1xeu_A Internalin C; cellular 99.4 1.8E-13 6.1E-18 138.2 7.3 150 563-736 38-188 (263)
104 4ezg_A Putative uncharacterize 99.4 1.1E-12 3.9E-17 126.1 11.6 125 518-646 44-170 (197)
105 4ezg_A Putative uncharacterize 99.4 1E-12 3.6E-17 126.4 10.5 148 495-647 45-193 (197)
106 3e6j_A Variable lymphocyte rec 99.4 7.1E-12 2.4E-16 123.6 15.5 147 568-753 21-170 (229)
107 2o6s_A Variable lymphocyte rec 99.4 3.7E-12 1.3E-16 123.8 12.3 125 543-673 29-158 (208)
108 3sb4_A Hypothetical leucine ri 99.3 5.9E-12 2E-16 132.0 14.2 99 634-748 225-327 (329)
109 1xeu_A Internalin C; cellular 99.3 1.3E-12 4.5E-17 131.7 8.1 166 564-753 17-183 (263)
110 2v9t_B SLIT homolog 2 protein 99.3 1.4E-11 4.6E-16 120.7 14.0 146 569-753 14-163 (220)
111 2o6s_A Variable lymphocyte rec 99.3 6E-12 2E-16 122.3 11.3 154 517-684 27-185 (208)
112 2xot_A Amphoterin-induced prot 99.3 5.8E-12 2E-16 133.8 11.6 169 545-728 21-198 (361)
113 1dce_A Protein (RAB geranylger 99.3 5.1E-14 1.7E-18 157.8 -7.0 198 516-748 347-566 (567)
114 3sb4_A Hypothetical leucine ri 99.3 3.4E-11 1.2E-15 126.1 15.1 109 517-629 201-313 (329)
115 3e6j_A Variable lymphocyte rec 99.3 2.4E-11 8.3E-16 119.7 12.7 129 517-647 39-171 (229)
116 2xot_A Amphoterin-induced prot 99.3 9.5E-12 3.3E-16 132.1 9.9 151 518-673 39-199 (361)
117 2v70_A SLIT-2, SLIT homolog 2 99.2 5.9E-11 2E-15 116.1 14.4 82 520-601 83-164 (220)
118 2v9t_B SLIT homolog 2 protein 99.2 3.7E-11 1.2E-15 117.6 12.5 128 518-646 32-163 (220)
119 2v70_A SLIT-2, SLIT homolog 2 99.2 7.7E-11 2.6E-15 115.3 14.0 105 519-623 58-162 (220)
120 2ell_A Acidic leucine-rich nuc 99.2 2.9E-11 1E-15 112.9 9.5 137 541-682 23-164 (168)
121 2ell_A Acidic leucine-rich nuc 99.2 4.5E-11 1.6E-15 111.6 8.6 134 565-737 23-164 (168)
122 1dce_A Protein (RAB geranylger 99.1 1.7E-12 5.9E-17 145.4 -3.9 156 530-726 397-567 (567)
123 2je0_A Acidic leucine-rich nuc 99.1 2.5E-11 8.6E-16 110.8 4.1 128 542-672 17-149 (149)
124 2je0_A Acidic leucine-rich nuc 99.1 1E-10 3.5E-15 106.7 6.6 126 565-727 16-148 (149)
125 4fdw_A Leucine rich hypothetic 99.1 7.4E-09 2.5E-13 110.6 22.1 213 519-751 158-379 (401)
126 1a9n_A U2A', U2A'; complex (nu 99.0 1.6E-10 5.6E-15 108.6 6.2 86 659-754 60-152 (176)
127 2wfh_A SLIT homolog 2 protein 99.0 1.9E-09 6.4E-14 102.8 12.5 121 569-728 13-135 (193)
128 4fs7_A Uncharacterized protein 99.0 2.6E-08 9E-13 106.9 21.5 191 536-751 179-375 (394)
129 1a9n_A U2A', U2A'; complex (nu 99.0 3.8E-10 1.3E-14 106.1 6.0 127 519-673 20-150 (176)
130 4b8c_D Glucose-repressible alc 99.0 1.2E-10 4E-15 134.9 2.9 117 533-652 215-333 (727)
131 2o6r_A Variable lymphocyte rec 99.0 3.3E-09 1.1E-13 99.8 12.3 106 634-753 27-135 (177)
132 1w8a_A SLIT protein; signaling 99.0 3E-09 1E-13 101.4 11.9 106 518-623 29-135 (192)
133 1w8a_A SLIT protein; signaling 99.0 3.5E-09 1.2E-13 101.0 12.1 85 519-603 55-139 (192)
134 4fdw_A Leucine rich hypothetic 99.0 2.3E-08 7.9E-13 106.8 19.6 212 519-752 136-355 (401)
135 4b8c_D Glucose-repressible alc 98.9 2.2E-10 7.6E-15 132.6 3.7 110 557-673 215-326 (727)
136 1ds9_A Outer arm dynein; leuci 98.9 1.5E-11 5.2E-16 118.3 -5.7 145 520-669 25-180 (198)
137 1ds9_A Outer arm dynein; leuci 98.9 9.9E-12 3.4E-16 119.6 -7.6 150 535-725 11-180 (198)
138 2wfh_A SLIT homolog 2 protein 98.9 7.8E-09 2.7E-13 98.5 10.7 104 517-623 30-135 (193)
139 2o6r_A Variable lymphocyte rec 98.8 2E-08 6.8E-13 94.4 10.5 81 519-600 29-110 (177)
140 4fs7_A Uncharacterized protein 98.8 4.1E-07 1.4E-11 97.6 21.0 61 657-728 314-375 (394)
141 3g39_A Variable lymphocyte rec 98.6 9.4E-08 3.2E-12 88.8 9.6 83 634-729 29-112 (170)
142 2r9u_A Variable lymphocyte rec 98.6 1E-07 3.5E-12 88.9 9.6 83 634-729 32-115 (174)
143 2r9u_A Variable lymphocyte rec 98.6 8.2E-08 2.8E-12 89.6 8.9 98 521-623 15-114 (174)
144 3g39_A Variable lymphocyte rec 98.6 1.4E-07 4.8E-12 87.7 8.8 99 520-623 11-111 (170)
145 4gt6_A Cell surface protein; l 98.5 8.1E-06 2.8E-10 87.4 21.8 105 328-447 59-169 (394)
146 4gt6_A Cell surface protein; l 98.4 1.3E-05 4.5E-10 85.7 21.1 279 324-646 79-368 (394)
147 3un9_A NLR family member X1; l 98.4 2.6E-08 9E-13 105.3 -1.7 165 519-711 73-254 (372)
148 2ifg_A High affinity nerve gro 98.3 1.3E-06 4.6E-11 91.8 9.3 83 517-600 30-113 (347)
149 4h09_A Hypothetical leucine ri 98.2 0.00017 5.6E-09 76.7 24.0 291 384-738 41-350 (379)
150 2ifg_A High affinity nerve gro 98.2 2.9E-06 1E-10 89.2 9.4 99 522-623 12-112 (347)
151 2ra8_A Uncharacterized protein 98.2 2.2E-06 7.6E-11 89.6 7.8 169 535-733 132-320 (362)
152 4h09_A Hypothetical leucine ri 98.2 0.0002 6.8E-09 76.1 23.2 134 561-713 212-349 (379)
153 3un9_A NLR family member X1; l 98.1 6.7E-08 2.3E-12 102.1 -5.0 172 541-735 71-254 (372)
154 2ra8_A Uncharacterized protein 98.1 5.5E-06 1.9E-10 86.6 9.4 81 365-447 139-228 (362)
155 3e4g_A ATP synthase subunit S, 98.1 2.2E-06 7.6E-11 78.2 4.1 87 366-453 62-154 (176)
156 3e4g_A ATP synthase subunit S, 98.0 5.4E-06 1.9E-10 75.7 5.2 89 635-734 61-154 (176)
157 1io0_A Tropomodulin; LRR prote 97.3 0.00011 3.7E-09 68.9 3.1 118 324-449 28-162 (185)
158 3rw6_A Nuclear RNA export fact 97.0 0.00022 7.4E-09 70.4 2.7 80 539-620 167-257 (267)
159 1io0_A Tropomodulin; LRR prote 97.0 0.00022 7.4E-09 66.8 2.1 16 634-649 150-165 (185)
160 3rw6_A Nuclear RNA export fact 97.0 0.0005 1.7E-08 67.8 4.5 79 364-444 169-257 (267)
161 3rfe_A Platelet glycoprotein I 94.2 0.061 2.1E-06 46.4 5.7 36 694-730 30-66 (130)
162 3rfe_A Platelet glycoprotein I 93.7 0.093 3.2E-06 45.3 5.7 52 699-754 12-67 (130)
163 1pgv_A TMD-1, tropomodulin TMD 90.0 0.25 8.5E-06 45.7 4.3 93 325-422 34-136 (197)
164 1pgv_A TMD-1, tropomodulin TMD 89.6 0.14 4.9E-06 47.4 2.3 42 535-576 63-108 (197)
165 2lz0_A Uncharacterized protein 29.6 64 0.0022 25.6 4.5 35 692-728 17-52 (100)
166 2lz0_A Uncharacterized protein 20.4 1.5E+02 0.0051 23.4 5.1 42 708-751 8-52 (100)
No 1
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=100.00 E-value=1.5e-50 Score=476.53 Aligned_cols=644 Identities=17% Similarity=0.113 Sum_probs=412.9
Q ss_pred cccceeecCCCCcccc----ccccCCCCCCCCccCceEEcCCCC-CCccccccccCCCceEEEccccCCCChhhhHHh--
Q 035579 5 IKLHHLNNSNTDSLEE----MPLGIGKLTCLQTLSNFVVGKDSG-SRLPELKLLTYLRGTLHISKLENVTDIGDAKEA-- 77 (814)
Q Consensus 5 ~~L~~L~l~~~~~~~~----lp~~i~~L~~L~~L~~~~~~~~~~-~~~~~l~~l~~L~~~L~l~~~~~~~~~~~~~~~-- 77 (814)
.+++.|||+++. +.. +|+.+++|+.|+.+ +.+.... ..+..++++++|+ .|+++... .....+.
T Consensus 50 ~~v~~L~L~~~~-l~g~~~~l~~~l~~L~~L~~l---~~~~~~~~~l~~~~~~l~~L~-~L~Ls~n~----l~~~~~~~~ 120 (768)
T 3rgz_A 50 DKVTSIDLSSKP-LNVGFSAVSSSLLSLTGLESL---FLSNSHINGSVSGFKCSASLT-SLDLSRNS----LSGPVTTLT 120 (768)
T ss_dssp TEEEEEECTTSC-CCEEHHHHHHHTTTCTTCCEE---ECTTSCEEECCCCCCCCTTCC-EEECCSSE----EEEEGGGGG
T ss_pred CcEEEEECCCCC-cCCccCccChhHhccCccccc---CCcCCCcCCCchhhccCCCCC-EEECCCCc----CCCcCCChH
Confidence 357788888887 544 77778877777666 3332221 1234677888888 88776533 2222333
Q ss_pred hcccCCCcceeEEEEecCCCCCCCcchhhHHhhhcC-CCCCcCcccEEEeeeCCCCCCc-c---ccCCCCCcccEEEEec
Q 035579 78 QLDVKENLRELLLQWTRSTDGSSSWKAETEMGVLDM-LKPHKNLEQFGICGYGGTKFPT-W---LGDCSFSNLVTLKFKD 152 (814)
Q Consensus 78 ~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~-l~~~~~L~~L~l~~~~~~~~p~-~---~~~~~l~~L~~L~L~~ 152 (814)
.+..+++|++|++++|..... ++.. +..+++|++|++++|.+...+. . +. .+++|++|++++
T Consensus 121 ~l~~l~~L~~L~Ls~n~l~~~-----------~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~--~l~~L~~L~Ls~ 187 (768)
T 3rgz_A 121 SLGSCSGLKFLNVSSNTLDFP-----------GKVSGGLKLNSLEVLDLSANSISGANVVGWVLSD--GCGELKHLAISG 187 (768)
T ss_dssp GGGGCTTCCEEECCSSEEECC-----------SSCCSCCCCTTCSEEECCSSCCEEETHHHHHHTT--CCTTCCEEECCS
T ss_pred HHhCCCCCCEEECcCCccCCc-----------CCHHHhccCCCCCEEECCCCccCCcCChhhhhhc--cCCCCCEEECCC
Confidence 678888888888886654321 2222 3567888888888887654432 2 33 678888888888
Q ss_pred CCCCCCCCCCCCCCccceeeecCCcCceeeCccccCCCCCCCCCCcceeeccccccccccccCCCCCCcccCCcccEEEE
Q 035579 153 CGVCTTLPSVGQLSSLKHLTVRGMSRVKSLGSEFYGNDSPIPFPCLETLRFENMQEWEDWIPLRSDQGVEGFPKLRELHI 232 (814)
Q Consensus 153 ~~~~~~l~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~l~~L~~L~l 232 (814)
|.+.+.. ++..+++|++|++++|.....++ .+. .+++|++|+++++ .+.+..+.. +..+++|++|++
T Consensus 188 n~l~~~~-~~~~l~~L~~L~Ls~n~l~~~~~-~l~------~l~~L~~L~Ls~n-~l~~~~~~~----l~~l~~L~~L~L 254 (768)
T 3rgz_A 188 NKISGDV-DVSRCVNLEFLDVSSNNFSTGIP-FLG------DCSALQHLDISGN-KLSGDFSRA----ISTCTELKLLNI 254 (768)
T ss_dssp SEEESCC-BCTTCTTCCEEECCSSCCCSCCC-BCT------TCCSCCEEECCSS-CCCSCHHHH----TTTCSSCCEEEC
T ss_pred CcccccC-CcccCCcCCEEECcCCcCCCCCc-ccc------cCCCCCEEECcCC-cCCCcccHH----HhcCCCCCEEEC
Confidence 8755443 34788888888888865433232 222 2788888888883 454433222 567888888888
Q ss_pred ccCCCcccCCCC-CCCcccceeeccccceeEEcCCCceeeecccccCCCCCceeeccCCccccccCCCCCCCCCc-ceEE
Q 035579 233 ISCSKLQGTFPE-HLPALEMLVIEGSLCKFEIGGCKKVVWRSATDHLGSQNSVVCRDTSNQVFLAGPLKPRLPKL-EELK 310 (814)
Q Consensus 233 ~~c~~l~~~lp~-~l~~L~~L~l~~~l~~l~l~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L-~~L~ 310 (814)
++|. +++.+|. .+++|+.|++ ++| .+.|.+|..+..+ ..|+
T Consensus 255 s~n~-l~~~~~~~~l~~L~~L~L---------~~n---------------------------~l~~~ip~~~~~~~~~L~ 297 (768)
T 3rgz_A 255 SSNQ-FVGPIPPLPLKSLQYLSL---------AEN---------------------------KFTGEIPDFLSGACDTLT 297 (768)
T ss_dssp CSSC-CEESCCCCCCTTCCEEEC---------CSS---------------------------EEEESCCCCSCTTCTTCS
T ss_pred CCCc-ccCccCccccCCCCEEEC---------cCC---------------------------ccCCccCHHHHhhcCcCC
Confidence 8887 6656664 4556666665 443 2344556666554 6777
Q ss_pred EcCCCCcchhccchhhhhhcCCCCCeEEEecCCCcccchhhHHHHHHHHhhhccccccEEEeeccCCccccccccCCCC-
Q 035579 311 INDMKEQTYMWKSHNELLQDICSLRRLTIRSCPKLQSLVAEEEKDQQQQLCELSCRLEYLILSCCEGLVKLPQSSLSLC- 389 (814)
Q Consensus 311 ~~~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~~~~~~l~- 389 (814)
.++++++.... ..+..++.+++|++|++++|.....++... +..+ ++|++|++++|.+.+.+|..+..++
T Consensus 298 ~L~Ls~n~l~~-~~p~~~~~l~~L~~L~L~~n~l~~~ip~~~----l~~l----~~L~~L~Ls~n~l~~~~p~~l~~l~~ 368 (768)
T 3rgz_A 298 GLDLSGNHFYG-AVPPFFGSCSLLESLALSSNNFSGELPMDT----LLKM----RGLKVLDLSFNEFSGELPESLTNLSA 368 (768)
T ss_dssp EEECCSSEEEE-CCCGGGGGCTTCCEEECCSSEEEEECCHHH----HTTC----TTCCEEECCSSEEEECCCTTHHHHTT
T ss_pred EEECcCCcCCC-ccchHHhcCCCccEEECCCCcccCcCCHHH----HhcC----CCCCEEeCcCCccCccccHHHHhhhc
Confidence 77777776632 445567888999999998874333555432 3333 7899999999888778888887776
Q ss_pred CcceEeeecCCCCcccCC-CCC--CCCCcEEEecccCCCCCCchhhhcCCCCCccEEEEecCCCCcccccc-cCcCccce
Q 035579 390 SLREIGIYKCSSLVSFPE-VAL--PSKLEKIHIGACDALKSLPEAWMCDTNSSLEILYIEGCRSLTYIAAV-QLPSSLKN 465 (814)
Q Consensus 390 ~L~~L~L~~~~~l~~~~~-~~~--~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~-~~~~~L~~ 465 (814)
+|++|++++|.....++. +.. +++|++|++++|...+.+|..+ ..+++|++|++++|.....++.. ..+++|+.
T Consensus 369 ~L~~L~Ls~N~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~l--~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~ 446 (768)
T 3rgz_A 369 SLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTL--SNCSELVSLHLSFNYLSGTIPSSLGSLSKLRD 446 (768)
T ss_dssp TCSEEECCSSEEEEECCTTTTCSTTCCCCEEECCSSEEEEECCGGG--GGCTTCCEEECCSSEEESCCCGGGGGCTTCCE
T ss_pred CCcEEEccCCCcCCCcChhhhhcccCCccEEECCCCccccccCHHH--hcCCCCCEEECcCCcccCcccHHHhcCCCCCE
Confidence 899999988765444443 333 6789999999988555777776 77888999999887533233221 22344555
Q ss_pred eeeccccCCcccccccCCCCCCCCCCCCCCccEEeecCCCCcccccccCCCcccccEEEEeccCCcchhhHhhcCCCCcc
Q 035579 466 LQIHGCYNIKTLTVEEGIPSSSSSRYTSSILEHLSIVGCPSLTCIFSKNELPATLESLSVYKCSKLESIAERLDNNTSLE 545 (814)
Q Consensus 466 L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~ 545 (814)
|+++++.... .+|.. ....++|++|++++|...+.+|..+..+++|+
T Consensus 447 L~L~~n~l~~------~~p~~---------------------------~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~ 493 (768)
T 3rgz_A 447 LKLWLNMLEG------EIPQE---------------------------LMYVKTLETLILDFNDLTGEIPSGLSNCTNLN 493 (768)
T ss_dssp EECCSSCCCS------CCCGG---------------------------GGGCTTCCEEECCSSCCCSCCCGGGGGCTTCC
T ss_pred EECCCCcccC------cCCHH---------------------------HcCCCCceEEEecCCcccCcCCHHHhcCCCCC
Confidence 5555543211 22222 22334566666666655555666666666666
Q ss_pred eEeecccCCcccccccCCCCCCccEEEecCCCCceecCCCCCCCCCcceEeeccccccccccccccCCCCcceE------
Q 035579 546 TIGINFCENLKILPSGLHNLRQLREITIQRCGNLVSFPEGGLPCAKLSELRIFQCERLEALPKGLHNLTSLQEL------ 619 (814)
Q Consensus 546 ~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~~~~l~~lp~~~~~l~~L~~L------ 619 (814)
+|++++|.+.+.+|.+++.+++|++|++++|...+.+|..+..+++|+.|++++|+..+.+|..+.....+..+
T Consensus 494 ~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~~~~~~~~~ 573 (768)
T 3rgz_A 494 WISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGK 573 (768)
T ss_dssp EEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEEECCGGGGGCTTCCEEECCSSEEESBCCGGGGTTTTCBCCSTTCSC
T ss_pred EEEccCCccCCcCChHHhcCCCCCEEECCCCcccCcCCHHHcCCCCCCEEECCCCccCCcCChHHhcccchhhhhccccc
Confidence 66666666666666666666666666666665555566666666666666666665555555554443332221
Q ss_pred ----------------------------------------EecC-cc--CccccCCCCCceeEEEecCCcchhhhhhhcc
Q 035579 620 ----------------------------------------TIGG-AL--PSLEEDGLPTNLHSLDIRGNMEIWKSMIERG 656 (814)
Q Consensus 620 ----------------------------------------~l~~-~~--~~l~~~~~~~~L~~L~l~~n~~~~~~~~~~~ 656 (814)
+++. .+ ...+....+++|+.|++++|......+
T Consensus 574 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~g~~~~~~~~l~~L~~LdLs~N~l~g~ip---- 649 (768)
T 3rgz_A 574 RYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIP---- 649 (768)
T ss_dssp EEEEEECCSCCTTCCSSEEEEECTTCCGGGGGGGGGTCCSCTTSCEEEEECCCSCSSSBCCCEEECCSSCCBSCCC----
T ss_pred cccccccccccccccccccccccccccchhhhccccccccccccceecccCchhhhccccccEEECcCCcccccCC----
Confidence 1111 00 000123346889999999999887655
Q ss_pred cccCCCCcccEEEEecCCCCCccCCccccccCCCCCCCCCcceEEeccCCCCc-ccccccccCCCCCeEEecCCCCCCcc
Q 035579 657 RGFHRFSSLRHLTIDGCDDDMVSFPPEDKRLGTALPLPASLTDLEIGRFPNLE-RLSSSIVDLQNLTELCLRDCPKLKYF 735 (814)
Q Consensus 657 ~~l~~l~~L~~L~l~~~~~~l~~i~~~~~~~~~~~~~~~~L~~L~l~~~~~l~-~l~~~~~~l~~L~~L~l~~c~~l~~l 735 (814)
..++.+++|+.|++++| .....+|... ..+++|++|++++ |++. .+|..+..+++|++|++++|+--..+
T Consensus 650 ~~l~~l~~L~~L~Ls~N-~l~g~ip~~l-------~~L~~L~~LdLs~-N~l~g~ip~~l~~l~~L~~L~ls~N~l~g~i 720 (768)
T 3rgz_A 650 KEIGSMPYLFILNLGHN-DISGSIPDEV-------GDLRGLNILDLSS-NKLDGRIPQAMSALTMLTEIDLSNNNLSGPI 720 (768)
T ss_dssp GGGGGCTTCCEEECCSS-CCCSCCCGGG-------GGCTTCCEEECCS-SCCEECCCGGGGGCCCCSEEECCSSEEEEEC
T ss_pred HHHhccccCCEEeCcCC-ccCCCCChHH-------hCCCCCCEEECCC-CcccCcCChHHhCCCCCCEEECcCCcccccC
Confidence 67899999999999997 2445888887 4789999999999 5555 88989999999999999997666788
Q ss_pred CCCCCcCCccEEeecCCchhh----HhhccCCCccccccCCccEEE
Q 035579 736 PEKGLPSSLLRLSILSCPLIE----EKCRKDGGQYWDLLTHIPFVR 777 (814)
Q Consensus 736 p~~~l~~~L~~L~i~~c~~l~----~~~~~~~~~~~~~~~~i~~~~ 777 (814)
|..+.+.++....+.|||.+. ..|....+++|.+++|++.++
T Consensus 721 P~~~~~~~~~~~~~~gN~~Lcg~~l~~C~~~~~~~~~~~~~~~~~~ 766 (768)
T 3rgz_A 721 PEMGQFETFPPAKFLNNPGLCGYPLPRCDPSNADGYAHHQRSHHHH 766 (768)
T ss_dssp CSSSSGGGSCGGGGCSCTEEESTTSCCCCSCC--------------
T ss_pred CCchhhccCCHHHhcCCchhcCCCCcCCCCCccCCCCCCCCccccC
Confidence 887777778888888887543 257777889999999988653
No 2
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=100.00 E-value=8.2e-46 Score=436.17 Aligned_cols=581 Identities=19% Similarity=0.147 Sum_probs=416.3
Q ss_pred cccccccCCCceEEEccccCCCChhhhHHhhcccCCCcceeEEEEecCCCCCCCcchhhHHhhhc--CCCCCcCcccEEE
Q 035579 48 PELKLLTYLRGTLHISKLENVTDIGDAKEAQLDVKENLRELLLQWTRSTDGSSSWKAETEMGVLD--MLKPHKNLEQFGI 125 (814)
Q Consensus 48 ~~l~~l~~L~~~L~l~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~--~l~~~~~L~~L~l 125 (814)
+.+.+|++|+ .++ +.... ... .+..+..+++|++|++++|.... .++. .+..+++|++|++
T Consensus 71 ~~l~~L~~L~-~l~---~~~~~-~~~-l~~~~~~l~~L~~L~Ls~n~l~~-----------~~~~~~~l~~l~~L~~L~L 133 (768)
T 3rgz_A 71 SSLLSLTGLE-SLF---LSNSH-ING-SVSGFKCSASLTSLDLSRNSLSG-----------PVTTLTSLGSCSGLKFLNV 133 (768)
T ss_dssp HHTTTCTTCC-EEE---CTTSC-EEE-CCCCCCCCTTCCEEECCSSEEEE-----------EGGGGGGGGGCTTCCEEEC
T ss_pred hhHhccCccc-ccC---CcCCC-cCC-CchhhccCCCCCEEECCCCcCCC-----------cCCChHHHhCCCCCCEEEC
Confidence 4466666665 444 43332 211 23568999999999999776431 1334 7888999999999
Q ss_pred eeeCCC-CCCccccCCCCCcccEEEEecCCCCCCCCC----CCCCCccceeeecCCcCceeeCccccCCCCCCCCCCcce
Q 035579 126 CGYGGT-KFPTWLGDCSFSNLVTLKFKDCGVCTTLPS----VGQLSSLKHLTVRGMSRVKSLGSEFYGNDSPIPFPCLET 200 (814)
Q Consensus 126 ~~~~~~-~~p~~~~~~~l~~L~~L~L~~~~~~~~l~~----l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~ 200 (814)
++|... ..|..+. ..+++|++|++++|.+.+..+. ++++++|++|++++|. +..... ...+++|++
T Consensus 134 s~n~l~~~~~~~~~-~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~-------~~~l~~L~~ 204 (768)
T 3rgz_A 134 SSNTLDFPGKVSGG-LKLNSLEVLDLSANSISGANVVGWVLSDGCGELKHLAISGNK-ISGDVD-------VSRCVNLEF 204 (768)
T ss_dssp CSSEEECCSSCCSC-CCCTTCSEEECCSSCCEEETHHHHHHTTCCTTCCEEECCSSE-EESCCB-------CTTCTTCCE
T ss_pred cCCccCCcCCHHHh-ccCCCCCEEECCCCccCCcCChhhhhhccCCCCCEEECCCCc-ccccCC-------cccCCcCCE
Confidence 998744 3444431 1789999999999997655552 7899999999999974 332221 123899999
Q ss_pred eeccccccccccccCCCCCCcccCCcccEEEEccCCCcccCCCCC---CCcccceeeccccceeEEcCCCceeeeccccc
Q 035579 201 LRFENMQEWEDWIPLRSDQGVEGFPKLRELHIISCSKLQGTFPEH---LPALEMLVIEGSLCKFEIGGCKKVVWRSATDH 277 (814)
Q Consensus 201 L~l~~~~~l~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~lp~~---l~~L~~L~l~~~l~~l~l~~c~~~~~~~~~~~ 277 (814)
|+++++ .+....+. ++.+++|++|++++|. +++.+|.. +++|+.|++ ++|...
T Consensus 205 L~Ls~n-~l~~~~~~-----l~~l~~L~~L~Ls~n~-l~~~~~~~l~~l~~L~~L~L---------s~n~l~-------- 260 (768)
T 3rgz_A 205 LDVSSN-NFSTGIPF-----LGDCSALQHLDISGNK-LSGDFSRAISTCTELKLLNI---------SSNQFV-------- 260 (768)
T ss_dssp EECCSS-CCCSCCCB-----CTTCCSCCEEECCSSC-CCSCHHHHTTTCSSCCEEEC---------CSSCCE--------
T ss_pred EECcCC-cCCCCCcc-----cccCCCCCEEECcCCc-CCCcccHHHhcCCCCCEEEC---------CCCccc--------
Confidence 999994 45543332 5789999999999998 77666654 445555555 666432
Q ss_pred CCCCCceeeccCCccccccCCCCCCCCCcceEEEcCCCCcchhccchhhhhhcCCCCCeEEEecCCCcccchhhHHHHHH
Q 035579 278 LGSQNSVVCRDTSNQVFLAGPLKPRLPKLEELKINDMKEQTYMWKSHNELLQDICSLRRLTIRSCPKLQSLVAEEEKDQQ 357 (814)
Q Consensus 278 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~~~~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~~ 357 (814)
|.+|.. .++.|+.++++++......+..+...+++|++|++++|.....++.. +
T Consensus 261 -------------------~~~~~~--~l~~L~~L~L~~n~l~~~ip~~~~~~~~~L~~L~Ls~n~l~~~~p~~-----~ 314 (768)
T 3rgz_A 261 -------------------GPIPPL--PLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPF-----F 314 (768)
T ss_dssp -------------------ESCCCC--CCTTCCEEECCSSEEEESCCCCSCTTCTTCSEEECCSSEEEECCCGG-----G
T ss_pred -------------------CccCcc--ccCCCCEEECcCCccCCccCHHHHhhcCcCCEEECcCCcCCCccchH-----H
Confidence 222322 66677777888887754455555455699999999997433333332 4
Q ss_pred HHhhhccccccEEEeeccCCccccccc-cCCCCCcceEeeecCCCCcccCC-CCCCC-CCcEEEecccCCCCCCchhhhc
Q 035579 358 QQLCELSCRLEYLILSCCEGLVKLPQS-SLSLCSLREIGIYKCSSLVSFPE-VALPS-KLEKIHIGACDALKSLPEAWMC 434 (814)
Q Consensus 358 ~~l~~~~~~L~~L~L~~~~~~~~~~~~-~~~l~~L~~L~L~~~~~l~~~~~-~~~~~-~L~~L~l~~~~~l~~~~~~~~~ 434 (814)
..+ ++|++|++++|.+.+.+|.. +..+++|++|++++|.....+|. +..++ +|+.|++++|...+.++..+..
T Consensus 315 ~~l----~~L~~L~L~~n~l~~~ip~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~~L~~L~Ls~N~l~~~~~~~~~~ 390 (768)
T 3rgz_A 315 GSC----SLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQ 390 (768)
T ss_dssp GGC----TTCCEEECCSSEEEEECCHHHHTTCTTCCEEECCSSEEEECCCTTHHHHTTTCSEEECCSSEEEEECCTTTTC
T ss_pred hcC----CCccEEECCCCcccCcCCHHHHhcCCCCCEEeCcCCccCccccHHHHhhhcCCcEEEccCCCcCCCcChhhhh
Confidence 444 89999999999988788875 89999999999999865545653 34455 9999999999966667766532
Q ss_pred CCCCCccEEEEecCCCCcccccc-cCcCccceeeeccccCCcccccccCCCCCCCCCCCCCCccEEeecCCCCccccccc
Q 035579 435 DTNSSLEILYIEGCRSLTYIAAV-QLPSSLKNLQIHGCYNIKTLTVEEGIPSSSSSRYTSSILEHLSIVGCPSLTCIFSK 513 (814)
Q Consensus 435 ~~l~~L~~L~l~~~~~l~~~~~~-~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~ 513 (814)
..+++|++|++++|.....++.. ..+++|+.|+++++ ...+.+...
T Consensus 391 ~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N---------------------------------~l~~~~p~~ 437 (768)
T 3rgz_A 391 NPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFN---------------------------------YLSGTIPSS 437 (768)
T ss_dssp STTCCCCEEECCSSEEEEECCGGGGGCTTCCEEECCSS---------------------------------EEESCCCGG
T ss_pred cccCCccEEECCCCccccccCHHHhcCCCCCEEECcCC---------------------------------cccCcccHH
Confidence 33789999999997633333321 22344555554444 322221222
Q ss_pred CCCcccccEEEEeccCCcchhhHhhcCCCCcceEeecccCCcccccccCCCCCCccEEEecCCCCceecCCCCCCCCCcc
Q 035579 514 NELPATLESLSVYKCSKLESIAERLDNNTSLETIGINFCENLKILPSGLHNLRQLREITIQRCGNLVSFPEGGLPCAKLS 593 (814)
Q Consensus 514 ~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~l~~L~ 593 (814)
....++|+.|++++|...+.+|..+..+++|+.|++++|.+.+.+|..+..+++|++|++++|.....+|..+..+++|+
T Consensus 438 l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~ 517 (768)
T 3rgz_A 438 LGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLA 517 (768)
T ss_dssp GGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCC
T ss_pred HhcCCCCCEEECCCCcccCcCCHHHcCCCCceEEEecCCcccCcCCHHHhcCCCCCEEEccCCccCCcCChHHhcCCCCC
Confidence 33446899999999988889999999999999999999999999999999999999999999977778898899999999
Q ss_pred eEeeccccccccccccccCCCCcceEEecC-ccC-cccc-CCCCC---------ceeEEEecC-----------------
Q 035579 594 ELRIFQCERLEALPKGLHNLTSLQELTIGG-ALP-SLEE-DGLPT---------NLHSLDIRG----------------- 644 (814)
Q Consensus 594 ~L~l~~~~~l~~lp~~~~~l~~L~~L~l~~-~~~-~l~~-~~~~~---------~L~~L~l~~----------------- 644 (814)
+|++++|...+.+|..+.++++|+.|++++ .+. .+|. ..... ..+..++.+
T Consensus 518 ~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 597 (768)
T 3rgz_A 518 ILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQ 597 (768)
T ss_dssp EEECCSSCCEEECCGGGGGCTTCCEEECCSSEEESBCCGGGGTTTTCBCCSTTCSCEEEEEECCSCCTTCCSSEEEEECT
T ss_pred EEECCCCcccCcCCHHHcCCCCCCEEECCCCccCCcCChHHhcccchhhhhccccccccccccccccccccccccccccc
Confidence 999999987789999999999999999998 332 2222 11111 111122211
Q ss_pred --------------------CcchhhhhhhcccccCCCCcccEEEEecCCCCCccCCccccccCCCCCCCCCcceEEecc
Q 035579 645 --------------------NMEIWKSMIERGRGFHRFSSLRHLTIDGCDDDMVSFPPEDKRLGTALPLPASLTDLEIGR 704 (814)
Q Consensus 645 --------------------n~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~l~~i~~~~~~~~~~~~~~~~L~~L~l~~ 704 (814)
+...... +..+..+++|+.|++++|. ....+|... ..+++|+.|++++
T Consensus 598 ~~~~~~~~~l~~~~~~~l~~~~~~g~~----~~~~~~l~~L~~LdLs~N~-l~g~ip~~l-------~~l~~L~~L~Ls~ 665 (768)
T 3rgz_A 598 GIRSEQLNRLSTRNPCNITSRVYGGHT----SPTFDNNGSMMFLDMSYNM-LSGYIPKEI-------GSMPYLFILNLGH 665 (768)
T ss_dssp TCCGGGGGGGGGTCCSCTTSCEEEEEC----CCSCSSSBCCCEEECCSSC-CBSCCCGGG-------GGCTTCCEEECCS
T ss_pred cccchhhhccccccccccccceecccC----chhhhccccccEEECcCCc-ccccCCHHH-------hccccCCEEeCcC
Confidence 2111111 2457888999999999962 445788877 4789999999999
Q ss_pred CCCCc-ccccccccCCCCCeEEecCCCCCCccCCCC-CcCCccEEeecCCch
Q 035579 705 FPNLE-RLSSSIVDLQNLTELCLRDCPKLKYFPEKG-LPSSLLRLSILSCPL 754 (814)
Q Consensus 705 ~~~l~-~l~~~~~~l~~L~~L~l~~c~~l~~lp~~~-l~~~L~~L~i~~c~~ 754 (814)
|.++ .+|..++.+++|+.|++++|+--..+|... -+++|++|++++|+-
T Consensus 666 -N~l~g~ip~~l~~L~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~ls~N~l 716 (768)
T 3rgz_A 666 -NDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNL 716 (768)
T ss_dssp -SCCCSCCCGGGGGCTTCCEEECCSSCCEECCCGGGGGCCCCSEEECCSSEE
T ss_pred -CccCCCCChHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECcCCcc
Confidence 5565 899999999999999999964334666531 278999999999863
No 3
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=100.00 E-value=3.5e-40 Score=385.30 Aligned_cols=373 Identities=17% Similarity=0.087 Sum_probs=264.7
Q ss_pred CCCCCeEEEecCCCcccchhhHHHHHHHHhhhccccccEEEeeccCCccccccccCCCCCcceEeeecCCCCcccC-CCC
Q 035579 331 ICSLRRLTIRSCPKLQSLVAEEEKDQQQQLCELSCRLEYLILSCCEGLVKLPQSSLSLCSLREIGIYKCSSLVSFP-EVA 409 (814)
Q Consensus 331 l~~L~~L~l~~~~~l~~l~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~L~~~~~l~~~~-~~~ 409 (814)
.++|+.|+++++ .+..+.+..+ ..+ ..++|++|++++|.+.+..|..+..+++|++|++++|......+ .+.
T Consensus 221 ~~~L~~L~L~~n-~l~~~~~~~~----~~l--~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~ 293 (680)
T 1ziw_A 221 NTSIRNLSLSNS-QLSTTSNTTF----LGL--KWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLH 293 (680)
T ss_dssp TSCCCEEECTTS-CCCEECTTTT----GGG--GGSCCCEEECTTSCCCEECTTTTTTCTTCCEEECCSCCBSEECTTTTT
T ss_pred hccccEEEccCC-cccccChhHh----hcc--CcCCCCEEECCCCCcCccCcccccCcccccEeeCCCCccCccChhhhc
Confidence 477888888885 4554443322 111 00348888888888766666777888888888888865443333 355
Q ss_pred CCCCCcEEEecccCCCC-----CCch---hhhcCCCCCccEEEEecCCCCcccccc--cCcCccceeeeccccCCccccc
Q 035579 410 LPSKLEKIHIGACDALK-----SLPE---AWMCDTNSSLEILYIEGCRSLTYIAAV--QLPSSLKNLQIHGCYNIKTLTV 479 (814)
Q Consensus 410 ~~~~L~~L~l~~~~~l~-----~~~~---~~~~~~l~~L~~L~l~~~~~l~~~~~~--~~~~~L~~L~l~~~~~l~~~~~ 479 (814)
.+++|+.|++++|.... .+|. ..+ ..+++|++|++++|. +..++.. ..++
T Consensus 294 ~l~~L~~L~L~~~~~~~~~~~~~lp~i~~~~~-~~l~~L~~L~l~~n~-l~~~~~~~~~~l~------------------ 353 (680)
T 1ziw_A 294 GLFNVRYLNLKRSFTKQSISLASLPKIDDFSF-QWLKCLEHLNMEDND-IPGIKSNMFTGLI------------------ 353 (680)
T ss_dssp TCTTCCEEECTTCBCCC------CCEECTTTT-TTCTTCCEEECCSCC-BCCCCTTTTTTCT------------------
T ss_pred CCCCccEEeccchhhhcccccccccccChhhc-ccCCCCCEEECCCCc-cCCCChhHhcccc------------------
Confidence 67888888887764221 2221 111 566777777777754 2222211 1223
Q ss_pred ccCCCCCCCCCCCCCCccEEeecCCCCcccccccCCC----cccccEEEEeccCCcchhhHhhcCCCCcceEeecccCCc
Q 035579 480 EEGIPSSSSSRYTSSILEHLSIVGCPSLTCIFSKNEL----PATLESLSVYKCSKLESIAERLDNNTSLETIGINFCENL 555 (814)
Q Consensus 480 ~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~----~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~ 555 (814)
+|++|+++++..-....+...+ .++|+.|++++|...+..|..+..+++|+.|++++|.+.
T Consensus 354 ---------------~L~~L~Ls~n~~~~~~l~~~~f~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~ 418 (680)
T 1ziw_A 354 ---------------NLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIG 418 (680)
T ss_dssp ---------------TCCEEECTTCBSCCCEECTTTTGGGTTSCCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCE
T ss_pred ---------------CCcEEECCCCchhhhhcchhhhcccccCcCceEECCCCCCCeEChhhhhCCCCCCEEeCCCCcCc
Confidence 4455555443211110111111 147899999998888888888999999999999999998
Q ss_pred cccc-ccCCCCCCccEEEecCCCCceecCCCCCCCCCcceEeeccccc--cccccccccCCCCcceEEecC-ccCcccc-
Q 035579 556 KILP-SGLHNLRQLREITIQRCGNLVSFPEGGLPCAKLSELRIFQCER--LEALPKGLHNLTSLQELTIGG-ALPSLEE- 630 (814)
Q Consensus 556 ~~~~-~~~~~l~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~~~~--l~~lp~~~~~l~~L~~L~l~~-~~~~l~~- 630 (814)
+.+| ..+..+++|++|++++|......+..+..+++|++|++++|.. ...+|..+..+++|+.|++++ .+..++.
T Consensus 419 ~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~p~~~~~l~~L~~L~Ls~N~l~~i~~~ 498 (680)
T 1ziw_A 419 QELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNNNIANINDD 498 (680)
T ss_dssp EECCSGGGTTCTTCCEEECCSCSEEECCTTTTTTCTTCCEEECTTSCCBCTTCSSCTTTTCTTCCEEECCSSCCCCCCTT
T ss_pred cccCcccccCcccccEEecCCCCcceeChhhhhcCcccccchhccccccccccCCcccccCCCCCEEECCCCCCCcCChh
Confidence 7665 6788999999999999854444455778889999999999853 256788899999999999998 7777765
Q ss_pred -CCCCCceeEEEecCCcchhhhhhh----cccccCCCCcccEEEEecCCCCCccCCccccccCCCCCCCCCcceEEeccC
Q 035579 631 -DGLPTNLHSLDIRGNMEIWKSMIE----RGRGFHRFSSLRHLTIDGCDDDMVSFPPEDKRLGTALPLPASLTDLEIGRF 705 (814)
Q Consensus 631 -~~~~~~L~~L~l~~n~~~~~~~~~----~~~~l~~l~~L~~L~l~~~~~~l~~i~~~~~~~~~~~~~~~~L~~L~l~~~ 705 (814)
...+++|++|++++|......... ....+..+++|++|++++| .+..+|...+ ..+++|++|++++
T Consensus 499 ~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~N--~l~~i~~~~~------~~l~~L~~L~Ls~- 569 (680)
T 1ziw_A 499 MLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESN--GFDEIPVEVF------KDLFELKIIDLGL- 569 (680)
T ss_dssp TTTTCTTCCEEECCSSCCGGGGSTTSTTSCCCTTTTCTTCCEEECCSS--CCCCCCTTTT------TTCTTCCEEECCS-
T ss_pred hhccccccCEEeCCCCCccccchhhccCCcchhhcCCCCCCEEECCCC--CCCCCCHHHc------ccccCcceeECCC-
Confidence 455789999999999876643211 1123789999999999998 7778887653 5789999999999
Q ss_pred CCCccccc-ccccCCCCCeEEecCCCCCCccCCCCC---cCCccEEeecCCchh
Q 035579 706 PNLERLSS-SIVDLQNLTELCLRDCPKLKYFPEKGL---PSSLLRLSILSCPLI 755 (814)
Q Consensus 706 ~~l~~l~~-~~~~l~~L~~L~l~~c~~l~~lp~~~l---~~~L~~L~i~~c~~l 755 (814)
|.++.+|. .+..+++|+.|++++| +++.++...+ +++|+++++++||..
T Consensus 570 N~l~~l~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~~~~~L~~l~l~~N~~~ 622 (680)
T 1ziw_A 570 NNLNTLPASVFNNQVSLKSLNLQKN-LITSVEKKVFGPAFRNLTELDMRFNPFD 622 (680)
T ss_dssp SCCCCCCTTTTTTCTTCCEEECTTS-CCCBCCHHHHHHHHTTCSEEECTTCCCC
T ss_pred CCCCcCCHhHhCCCCCCCEEECCCC-cCCccChhHhcccccccCEEEccCCCcc
Confidence 89999988 4689999999999995 8988887543 589999999998843
No 4
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=100.00 E-value=1.5e-39 Score=379.94 Aligned_cols=584 Identities=16% Similarity=0.150 Sum_probs=360.4
Q ss_pred cceeecCCCCccccccccCCCCCCCCccCceEEcCCCC--CCccccccccCCCceEEEccccCCCChhhhHHhhcccCCC
Q 035579 7 LHHLNNSNTDSLEEMPLGIGKLTCLQTLSNFVVGKDSG--SRLPELKLLTYLRGTLHISKLENVTDIGDAKEAQLDVKEN 84 (814)
Q Consensus 7 L~~L~l~~~~~~~~lp~~i~~L~~L~~L~~~~~~~~~~--~~~~~l~~l~~L~~~L~l~~~~~~~~~~~~~~~~l~~l~~ 84 (814)
-+++|+++++ ++.+|..+. .++++| +...... .....+.++++|+ .|++.+.. .....+..+..+++
T Consensus 6 ~~~~~cs~~~-L~~ip~~~~--~~l~~L---~Ls~n~l~~~~~~~~~~l~~L~-~L~Ls~n~----l~~~~~~~~~~l~~ 74 (680)
T 1ziw_A 6 HEVADCSHLK-LTQVPDDLP--TNITVL---NLTHNQLRRLPAANFTRYSQLT-SLDVGFNT----ISKLEPELCQKLPM 74 (680)
T ss_dssp SSEEECCSSC-CSSCCSCSC--TTCSEE---ECCSSCCCCCCGGGGGGGTTCS-EEECCSSC----CCCCCTTHHHHCTT
T ss_pred CCeeECCCCC-ccccccccC--CCCcEE---ECCCCCCCCcCHHHHhCCCcCc-EEECCCCc----cCccCHHHHhcccC
Confidence 3678999998 999998775 677777 4433332 2223366677777 76665422 22222334555666
Q ss_pred cceeEEEEecCCCCCCCcchhhHHhhhcCCCCCcCcccEEEeeeCCCCCC-ccccCCCCCcccEEEEecCCCCCCCC-CC
Q 035579 85 LRELLLQWTRSTDGSSSWKAETEMGVLDMLKPHKNLEQFGICGYGGTKFP-TWLGDCSFSNLVTLKFKDCGVCTTLP-SV 162 (814)
Q Consensus 85 L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~p-~~~~~~~l~~L~~L~L~~~~~~~~l~-~l 162 (814)
|++|++++|..... ....+..+++|++|++++|.+..+| ..++ .+++|++|++++|......+ .+
T Consensus 75 L~~L~L~~n~l~~l-----------~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~--~l~~L~~L~Ls~n~l~~~~~~~~ 141 (680)
T 1ziw_A 75 LKVLNLQHNELSQL-----------SDKTFAFCTNLTELHLMSNSIQKIKNNPFV--KQKNLITLDLSHNGLSSTKLGTQ 141 (680)
T ss_dssp CCEEECCSSCCCCC-----------CTTTTTTCTTCSEEECCSSCCCCCCSCTTT--TCTTCCEEECCSSCCSCCCCCSS
T ss_pred cCEEECCCCccCcc-----------ChhhhccCCCCCEEECCCCccCccChhHcc--ccCCCCEEECCCCcccccCchhh
Confidence 66666655543321 1123555566666666666555444 2333 45666666666665443333 25
Q ss_pred CCCCccceeeecCCcCceeeCccccCCCCCCCCCCcceeeccccccccccccCCCCCCcccCCcccEEEEccCCCcccCC
Q 035579 163 GQLSSLKHLTVRGMSRVKSLGSEFYGNDSPIPFPCLETLRFENMQEWEDWIPLRSDQGVEGFPKLRELHIISCSKLQGTF 242 (814)
Q Consensus 163 ~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~l 242 (814)
+++++|++|++++|. ++.++....+. ..+++|++|++++ +.++...+.. +..+++|+.|+++++. +.+..
T Consensus 142 ~~l~~L~~L~L~~n~-l~~~~~~~~~~---~~~~~L~~L~L~~-n~l~~~~~~~----~~~l~~L~~L~l~~~~-l~~~~ 211 (680)
T 1ziw_A 142 VQLENLQELLLSNNK-IQALKSEELDI---FANSSLKKLELSS-NQIKEFSPGC----FHAIGRLFGLFLNNVQ-LGPSL 211 (680)
T ss_dssp SCCTTCCEEECCSSC-CCCBCHHHHGG---GTTCEESEEECTT-CCCCCBCTTG----GGGSSEECEEECTTCC-CHHHH
T ss_pred cccccCCEEEccCCc-ccccCHHHhhc---cccccccEEECCC-CcccccChhh----hhhhhhhhhhhccccc-cChhh
Confidence 556666666665542 22222211110 0034455555544 2233322211 2334444444444443 21000
Q ss_pred CCCCCcccceeeccccceeEEcCCCceeeecccccCCCCCceeeccCCccccccCCCCCCCCCcceEEEcCCCCcchhcc
Q 035579 243 PEHLPALEMLVIEGSLCKFEIGGCKKVVWRSATDHLGSQNSVVCRDTSNQVFLAGPLKPRLPKLEELKINDMKEQTYMWK 322 (814)
Q Consensus 243 p~~l~~L~~L~l~~~l~~l~l~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~~~~l~~~~~~~~ 322 (814)
...+ +..+ ....|+.++++++... .
T Consensus 212 ~~~~-----------------------------------------------------~~~l-~~~~L~~L~L~~n~l~-~ 236 (680)
T 1ziw_A 212 TEKL-----------------------------------------------------CLEL-ANTSIRNLSLSNSQLS-T 236 (680)
T ss_dssp HHHH-----------------------------------------------------HHHH-TTSCCCEEECTTSCCC-E
T ss_pred HHHH-----------------------------------------------------HHHh-hhccccEEEccCCccc-c
Confidence 0000 0000 0112222233333321 1
Q ss_pred chhhhhhcCC--CCCeEEEecCCCcccchhhHHHHHHHHhhhccccccEEEeeccCCccccccccCCCCCcceEeeecCC
Q 035579 323 SHNELLQDIC--SLRRLTIRSCPKLQSLVAEEEKDQQQQLCELSCRLEYLILSCCEGLVKLPQSSLSLCSLREIGIYKCS 400 (814)
Q Consensus 323 ~~~~~~~~l~--~L~~L~l~~~~~l~~l~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~L~~~~ 400 (814)
..+..+..++ +|++|++++| .+..+++.. +..+ ++|++|++++|.+.+..|..+..+++|++|++++|.
T Consensus 237 ~~~~~~~~l~~~~L~~L~Ls~n-~l~~~~~~~----~~~l----~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~~~ 307 (680)
T 1ziw_A 237 TSNTTFLGLKWTNLTMLDLSYN-NLNVVGNDS----FAWL----PQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSF 307 (680)
T ss_dssp ECTTTTGGGGGSCCCEEECTTS-CCCEECTTT----TTTC----TTCCEEECCSCCBSEECTTTTTTCTTCCEEECTTCB
T ss_pred cChhHhhccCcCCCCEEECCCC-CcCccCccc----ccCc----ccccEeeCCCCccCccChhhhcCCCCccEEeccchh
Confidence 2233444554 4999999886 455555432 3333 899999999999888888889999999999998753
Q ss_pred CCc-----ccC-----CCCCCCCCcEEEecccCCCCCCchhhhcCCCCCccEEEEecCCC-CcccccccCcCccceeeec
Q 035579 401 SLV-----SFP-----EVALPSKLEKIHIGACDALKSLPEAWMCDTNSSLEILYIEGCRS-LTYIAAVQLPSSLKNLQIH 469 (814)
Q Consensus 401 ~l~-----~~~-----~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~~~~-l~~~~~~~~~~~L~~L~l~ 469 (814)
... .+| .+..+++|++|++++|. +..++...+ ..+++|++|++++|.. +..++...+..
T Consensus 308 ~~~~~~~~~lp~i~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~-~~l~~L~~L~Ls~n~~~~~~l~~~~f~~-------- 377 (680)
T 1ziw_A 308 TKQSISLASLPKIDDFSFQWLKCLEHLNMEDND-IPGIKSNMF-TGLINLKYLSLSNSFTSLRTLTNETFVS-------- 377 (680)
T ss_dssp CCC------CCEECTTTTTTCTTCCEEECCSCC-BCCCCTTTT-TTCTTCCEEECTTCBSCCCEECTTTTGG--------
T ss_pred hhcccccccccccChhhcccCCCCCEEECCCCc-cCCCChhHh-ccccCCcEEECCCCchhhhhcchhhhcc--------
Confidence 221 223 35568999999999998 444544433 8899999999998752 22222211110
Q ss_pred cccCCcccccccCCCCCCCCCCCCCCccEEeecCCCCcccccccCCCcccccEEEEeccCCcchhh-HhhcCCCCcceEe
Q 035579 470 GCYNIKTLTVEEGIPSSSSSRYTSSILEHLSIVGCPSLTCIFSKNELPATLESLSVYKCSKLESIA-ERLDNNTSLETIG 548 (814)
Q Consensus 470 ~~~~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~l~~~~~~~~~~-~~~~~l~~L~~L~ 548 (814)
...+.|+.|+++++.............++|+.|++++|...+.++ ..+.++++|++|+
T Consensus 378 ---------------------~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~ 436 (680)
T 1ziw_A 378 ---------------------LAHSPLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIY 436 (680)
T ss_dssp ---------------------GTTSCCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCEEECCSGGGTTCTTCCEEE
T ss_pred ---------------------cccCcCceEECCCCCCCeEChhhhhCCCCCCEEeCCCCcCccccCcccccCcccccEEe
Confidence 000235555555544332212223345678888888887766655 5788899999999
Q ss_pred ecccCCcccccccCCCCCCccEEEecCCCC--ceecCCCCCCCCCcceEeeccccccccccccccCCCCcceEEecC-cc
Q 035579 549 INFCENLKILPSGLHNLRQLREITIQRCGN--LVSFPEGGLPCAKLSELRIFQCERLEALPKGLHNLTSLQELTIGG-AL 625 (814)
Q Consensus 549 L~~n~~~~~~~~~~~~l~~L~~L~l~~~~~--l~~~~~~~~~l~~L~~L~l~~~~~l~~lp~~~~~l~~L~~L~l~~-~~ 625 (814)
+++|.+.+..+..+..+++|++|++++|.. +..+|..+..+++|+.|++++|......+..+..+++|+.|++++ .+
T Consensus 437 Ls~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~p~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~Ls~N~l 516 (680)
T 1ziw_A 437 LSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNNNIANINDDMLEGLEKLEILDLQHNNL 516 (680)
T ss_dssp CCSCSEEECCTTTTTTCTTCCEEECTTSCCBCTTCSSCTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCC
T ss_pred cCCCCcceeChhhhhcCcccccchhccccccccccCCcccccCCCCCEEECCCCCCCcCChhhhccccccCEEeCCCCCc
Confidence 999988888888888899999999998843 245677788889999999999854443445688899999999988 55
Q ss_pred Ccccc----------CCCCCceeEEEecCCcchhhhhhhcccccCCCCcccEEEEecCCCCCccCCccccccCCCCCCCC
Q 035579 626 PSLEE----------DGLPTNLHSLDIRGNMEIWKSMIERGRGFHRFSSLRHLTIDGCDDDMVSFPPEDKRLGTALPLPA 695 (814)
Q Consensus 626 ~~l~~----------~~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~l~~i~~~~~~~~~~~~~~~ 695 (814)
..++. ...+++|++|++++|.+...+. ..|..+++|++|++++| .+..+|...+ ..++
T Consensus 517 ~~~~~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~i~~----~~~~~l~~L~~L~Ls~N--~l~~l~~~~~------~~l~ 584 (680)
T 1ziw_A 517 ARLWKHANPGGPIYFLKGLSHLHILNLESNGFDEIPV----EVFKDLFELKIIDLGLN--NLNTLPASVF------NNQV 584 (680)
T ss_dssp GGGGSTTSTTSCCCTTTTCTTCCEEECCSSCCCCCCT----TTTTTCTTCCEEECCSS--CCCCCCTTTT------TTCT
T ss_pred cccchhhccCCcchhhcCCCCCCEEECCCCCCCCCCH----HHcccccCcceeECCCC--CCCcCCHhHh------CCCC
Confidence 54422 3456899999999998775433 56899999999999998 7888888753 5689
Q ss_pred CcceEEeccCCCCccccc-ccc-cCCCCCeEEecCCCCC
Q 035579 696 SLTDLEIGRFPNLERLSS-SIV-DLQNLTELCLRDCPKL 732 (814)
Q Consensus 696 ~L~~L~l~~~~~l~~l~~-~~~-~l~~L~~L~l~~c~~l 732 (814)
+|+.|++++ |.++.++. .+. .+++|+.|++++|+-.
T Consensus 585 ~L~~L~L~~-N~l~~~~~~~~~~~~~~L~~l~l~~N~~~ 622 (680)
T 1ziw_A 585 SLKSLNLQK-NLITSVEKKVFGPAFRNLTELDMRFNPFD 622 (680)
T ss_dssp TCCEEECTT-SCCCBCCHHHHHHHHTTCSEEECTTCCCC
T ss_pred CCCEEECCC-CcCCccChhHhcccccccCEEEccCCCcc
Confidence 999999999 78998887 455 7899999999997643
No 5
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=100.00 E-value=3.3e-37 Score=355.25 Aligned_cols=297 Identities=16% Similarity=0.141 Sum_probs=176.9
Q ss_pred ccccEEEeeccCCccccccccCCCCCcceEeeecCCCCcccC-CCCCCCCCcEEEecccCCCCCC-chhhhcCCCCCccE
Q 035579 365 CRLEYLILSCCEGLVKLPQSSLSLCSLREIGIYKCSSLVSFP-EVALPSKLEKIHIGACDALKSL-PEAWMCDTNSSLEI 442 (814)
Q Consensus 365 ~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~L~~~~~l~~~~-~~~~~~~L~~L~l~~~~~l~~~-~~~~~~~~l~~L~~ 442 (814)
.+|+.|++++|.+.+..+..+..+++|++|++++| .++.+| .+..+++|++|++++|. +..+ +..+ ..+++|++
T Consensus 254 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n-~l~~lp~~l~~l~~L~~L~l~~n~-l~~~~~~~~--~~l~~L~~ 329 (606)
T 3t6q_A 254 MSVESINLQKHYFFNISSNTFHCFSGLQELDLTAT-HLSELPSGLVGLSTLKKLVLSANK-FENLCQISA--SNFPSLTH 329 (606)
T ss_dssp SEEEEEECTTCCCSSCCTTTTTTCTTCSEEECTTS-CCSCCCSSCCSCTTCCEEECTTCC-CSBGGGGCG--GGCTTCSE
T ss_pred CceeEEEeecCccCccCHHHhccccCCCEEeccCC-ccCCCChhhcccccCCEEECccCC-cCcCchhhh--hccCcCCE
Confidence 37888888888876666666888888888888886 455665 35667888888888887 4444 3333 66778888
Q ss_pred EEEecCCCCcccccccCcCccceeeeccccCCcccccccCCCCCCCCCCCCCCccEEeecCCCCcccccccCCCcccccE
Q 035579 443 LYIEGCRSLTYIAAVQLPSSLKNLQIHGCYNIKTLTVEEGIPSSSSSRYTSSILEHLSIVGCPSLTCIFSKNELPATLES 522 (814)
Q Consensus 443 L~l~~~~~l~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~L~~ 522 (814)
|++++|.....++... ....++|++
T Consensus 330 L~l~~n~~~~~~~~~~-------------------------------------------------------~~~l~~L~~ 354 (606)
T 3t6q_A 330 LSIKGNTKRLELGTGC-------------------------------------------------------LENLENLRE 354 (606)
T ss_dssp EECCSCSSCCBCCSST-------------------------------------------------------TTTCTTCCE
T ss_pred EECCCCCcccccchhh-------------------------------------------------------hhccCcCCE
Confidence 8887764222221100 001123444
Q ss_pred EEEeccCCcchh--hHhhcCCCCcceEeecccCCcccccccCCCCCCccEEEecCCCCceecCC-CCCCCCCcceEeecc
Q 035579 523 LSVYKCSKLESI--AERLDNNTSLETIGINFCENLKILPSGLHNLRQLREITIQRCGNLVSFPE-GGLPCAKLSELRIFQ 599 (814)
Q Consensus 523 L~l~~~~~~~~~--~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~-~~~~l~~L~~L~l~~ 599 (814)
|++++|...... +..+..+++|++|++++|.+.+..|..+..+++|++|++++|......+. .+..+++|++|++++
T Consensus 355 L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~ 434 (606)
T 3t6q_A 355 LDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSH 434 (606)
T ss_dssp EECCSSCCCEEEESTTTTTTCTTCCEEECCSCSCEEECTTTTTTCTTCSEEECTTCCEECCTTCCTTTTCTTCCEEECTT
T ss_pred EECCCCccccccCcchhcccCCCCCEEECCCCcCCcCCHHHhcCCccCCeEECCCCcCCCcccchhhhCcccCCEEECCC
Confidence 444444433332 44566677777777777777666666677777777777777643333333 255666777777777
Q ss_pred ccccccccccccCCCCcceEEecCccCccccCCCCCceeEEEecCCcchhhhhhhcccccCCCCcccEEEEecCCCCCcc
Q 035579 600 CERLEALPKGLHNLTSLQELTIGGALPSLEEDGLPTNLHSLDIRGNMEIWKSMIERGRGFHRFSSLRHLTIDGCDDDMVS 679 (814)
Q Consensus 600 ~~~l~~lp~~~~~l~~L~~L~l~~~~~~l~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~l~~ 679 (814)
|......|..+..+++| ++|++++|+....... .+..+..+++|++|++++| .+..
T Consensus 435 n~l~~~~~~~~~~l~~L---------------------~~L~L~~n~l~~~~~~-~~~~~~~l~~L~~L~Ls~n--~l~~ 490 (606)
T 3t6q_A 435 SLLDISSEQLFDGLPAL---------------------QHLNLQGNHFPKGNIQ-KTNSLQTLGRLEILVLSFC--DLSS 490 (606)
T ss_dssp CCCBTTCTTTTTTCTTC---------------------CEEECTTCBCGGGEEC-SSCGGGGCTTCCEEECTTS--CCCE
T ss_pred CccCCcCHHHHhCCCCC---------------------CEEECCCCCCCccccc-cchhhccCCCccEEECCCC--ccCc
Confidence 64444444445444444 4444444443321110 0134556667777777765 4444
Q ss_pred CCccccccCCCCCCCCCcceEEeccCCCCccc-ccccccCCCCCeEEecCCCCCCccCCCCC--cCCccEEeecCCc
Q 035579 680 FPPEDKRLGTALPLPASLTDLEIGRFPNLERL-SSSIVDLQNLTELCLRDCPKLKYFPEKGL--PSSLLRLSILSCP 753 (814)
Q Consensus 680 i~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l-~~~~~~l~~L~~L~l~~c~~l~~lp~~~l--~~~L~~L~i~~c~ 753 (814)
++... +..+++|++|++++ +.++.+ |..+..+++| .|++++| +++.+++..+ +++|+++++++||
T Consensus 491 ~~~~~------~~~l~~L~~L~Ls~-N~l~~~~~~~l~~l~~L-~L~L~~N-~l~~~~~~~~~~l~~L~~L~l~~N~ 558 (606)
T 3t6q_A 491 IDQHA------FTSLKMMNHVDLSH-NRLTSSSIEALSHLKGI-YLNLASN-HISIILPSLLPILSQQRTINLRQNP 558 (606)
T ss_dssp ECTTT------TTTCTTCCEEECCS-SCCCGGGGGGGTTCCSC-EEECCSS-CCCCCCGGGHHHHHTSSEEECTTCC
T ss_pred cChhh------hccccCCCEEECCC-CccCcCChhHhCccccc-EEECcCC-cccccCHhhcccCCCCCEEeCCCCC
Confidence 43322 14567777777777 445443 3467777777 7777774 5666655433 5677777777776
No 6
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=100.00 E-value=1.8e-36 Score=349.11 Aligned_cols=514 Identities=14% Similarity=0.096 Sum_probs=264.4
Q ss_pred cEEEeeeCCCCCCccccCCCCCcccEEEEecCCCCCCCC-CCCCCCccceeeecCCcCceeeCccccCCCCCCCCCCcce
Q 035579 122 QFGICGYGGTKFPTWLGDCSFSNLVTLKFKDCGVCTTLP-SVGQLSSLKHLTVRGMSRVKSLGSEFYGNDSPIPFPCLET 200 (814)
Q Consensus 122 ~L~l~~~~~~~~p~~~~~~~l~~L~~L~L~~~~~~~~l~-~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~ 200 (814)
+++.++..++.+|..+. +++++|++++|......+ .++++++|++|++++| .++.+....++ .+++|++
T Consensus 15 ~~~c~~~~l~~ip~~~~----~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n-~l~~i~~~~~~-----~l~~L~~ 84 (606)
T 3vq2_A 15 TYQCMDQKLSKVPDDIP----SSTKNIDLSFNPLKILKSYSFSNFSELQWLDLSRC-EIETIEDKAWH-----GLHHLSN 84 (606)
T ss_dssp EEECTTSCCSSCCTTSC----TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTC-CCCEECTTTTT-----TCTTCCE
T ss_pred ceEccCCCcccCCCCCC----CCcCEEECCCCCcCEeChhhccCCccCcEEeCCCC-cccccCHHHhh-----chhhcCE
Confidence 44555555555555432 556666666665433333 3566666666666654 34444332211 1556666
Q ss_pred eeccccccccccccCCCCCCcccCCcccEEEEccCCCcccCCCCC---CCcccceeeccccceeEEcCCCceeeeccccc
Q 035579 201 LRFENMQEWEDWIPLRSDQGVEGFPKLRELHIISCSKLQGTFPEH---LPALEMLVIEGSLCKFEIGGCKKVVWRSATDH 277 (814)
Q Consensus 201 L~l~~~~~l~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~lp~~---l~~L~~L~l~~~l~~l~l~~c~~~~~~~~~~~ 277 (814)
|++++ +.++...+.. ++.+++|++|++++|. +++..+.. +++|+.|++ ++|.
T Consensus 85 L~Ls~-n~l~~~~p~~----~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~L---------~~n~---------- 139 (606)
T 3vq2_A 85 LILTG-NPIQSFSPGS----FSGLTSLENLVAVETK-LASLESFPIGQLITLKKLNV---------AHNF---------- 139 (606)
T ss_dssp EECTT-CCCCCCCTTS----STTCTTCCEEECTTSC-CCCSSSSCCTTCTTCCEEEC---------CSSC----------
T ss_pred eECCC-CcccccChhh----cCCcccCCEEEccCCc-cccccccccCCCCCCCEEeC---------CCCc----------
Confidence 66665 2344433222 3456666666666665 44122122 233333333 3332
Q ss_pred CCCCCceeeccCCccccccC-CCCCCCCCcceEEEcCCCCcchhccchhhhhhcCCCC----CeEEEecCCCcccchhhH
Q 035579 278 LGSQNSVVCRDTSNQVFLAG-PLKPRLPKLEELKINDMKEQTYMWKSHNELLQDICSL----RRLTIRSCPKLQSLVAEE 352 (814)
Q Consensus 278 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~L~~L~~~~l~~~~~~~~~~~~~~~~l~~L----~~L~l~~~~~l~~l~~~~ 352 (814)
+.+ .+|..|.+++.|+.++++++.... .++..+..+.+| ++|+++++ .++.++...
T Consensus 140 -----------------l~~~~lp~~~~~l~~L~~L~Ls~n~l~~-~~~~~~~~l~~L~~~l~~L~l~~n-~l~~~~~~~ 200 (606)
T 3vq2_A 140 -----------------IHSCKLPAYFSNLTNLVHVDLSYNYIQT-ITVNDLQFLRENPQVNLSLDMSLN-PIDFIQDQA 200 (606)
T ss_dssp -----------------CCCCCCCGGGGTCTTCCEEECCSSCCCE-ECTTTTHHHHHCTTCCCEEECTTC-CCCEECTTT
T ss_pred -----------------ccceechHhHhhcCCCCEEEccCCccee-cChhhhhhhhccccccceeeccCC-CcceeCccc
Confidence 111 234445555555555665554422 223333444433 36777764 455554432
Q ss_pred HHHHHHHhhhccccccEEEeeccCCc-cccccccCCCCCcceEeeecCC--CCcccC--------CCCCCCCCcEEEecc
Q 035579 353 EKDQQQQLCELSCRLEYLILSCCEGL-VKLPQSSLSLCSLREIGIYKCS--SLVSFP--------EVALPSKLEKIHIGA 421 (814)
Q Consensus 353 ~~~~~~~l~~~~~~L~~L~L~~~~~~-~~~~~~~~~l~~L~~L~L~~~~--~l~~~~--------~~~~~~~L~~L~l~~ 421 (814)
+.. .+|++|++++|... ...|..+..+++|+.+++.... ....++ .+. --+++.+++..
T Consensus 201 ~~~---------~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~l~~~~~~~~~~l~-~l~l~~l~l~~ 270 (606)
T 3vq2_A 201 FQG---------IKLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFEPSIMEGLC-DVTIDEFRLTY 270 (606)
T ss_dssp TTT---------CEEEEEEEESCCSCHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCGGGGTTGG-GSEEEEEEECC
T ss_pred ccC---------ceeeeeeccCCccchhHHHHHhccccccccccccccccccCCcccccChHHhhhhh-hccHhheeccc
Confidence 211 46777777777654 3455566667777766664311 111111 011 11455666633
Q ss_pred cCCCCCCchhhhcCCCCCccEEEEecCCCCcccccccCcCccceeeeccccCCcccccccCCCCCCCCCCCCCCccEEee
Q 035579 422 CDALKSLPEAWMCDTNSSLEILYIEGCRSLTYIAAVQLPSSLKNLQIHGCYNIKTLTVEEGIPSSSSSRYTSSILEHLSI 501 (814)
Q Consensus 422 ~~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~L~~L~l 501 (814)
+..+......+ ..+++|+.|++++|. ++.++.....++|++|++.+|.. + .+|.. .+++|++|++
T Consensus 271 ~~~~~~~~~~~--~~l~~L~~L~l~~~~-~~~l~~l~~~~~L~~L~l~~n~l-~------~lp~~-----~l~~L~~L~l 335 (606)
T 3vq2_A 271 TNDFSDDIVKF--HCLANVSAMSLAGVS-IKYLEDVPKHFKWQSLSIIRCQL-K------QFPTL-----DLPFLKSLTL 335 (606)
T ss_dssp CTTCCGGGGSC--GGGTTCSEEEEESCC-CCCCCCCCTTCCCSEEEEESCCC-S------SCCCC-----CCSSCCEEEE
T ss_pred ccccccccccc--ccCCCCCEEEecCcc-chhhhhccccccCCEEEcccccC-c------ccccC-----CCCccceeec
Confidence 33233322223 667788888888754 45555334445566666666632 3 33321 2234444444
Q ss_pred cCCCCcccccccCCCcccccEEEEeccCCcchhhHhhcCCCCcceEeecccCCccc--ccccCCCCCCccEEEecCCCCc
Q 035579 502 VGCPSLTCIFSKNELPATLESLSVYKCSKLESIAERLDNNTSLETIGINFCENLKI--LPSGLHNLRQLREITIQRCGNL 579 (814)
Q Consensus 502 ~~~~~l~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~--~~~~~~~l~~L~~L~l~~~~~l 579 (814)
+++.. ...+ .+..+++|++|++++|.+.+. .|..+..+++|++|++++| .+
T Consensus 336 ~~n~~------------------------~~~~--~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~L~~n-~l 388 (606)
T 3vq2_A 336 TMNKG------------------------SISF--KKVALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFN-GA 388 (606)
T ss_dssp ESCSS------------------------CEEC--CCCCCTTCCEEECCSSCEEEEEECCHHHHCCSCCCEEECCSC-SE
T ss_pred cCCcC------------------------ccch--hhccCCCCCEEECcCCccCCCcchhhhhccCCcccEeECCCC-cc
Confidence 44433 2222 244455555555555554433 2444455555555555554 34
Q ss_pred eecCCCCCCCCCcceEeecccccccccc-ccccCCCCcceEEecC-ccCccc--cCCCCCceeEEEecCCcchhhhhhhc
Q 035579 580 VSFPEGGLPCAKLSELRIFQCERLEALP-KGLHNLTSLQELTIGG-ALPSLE--EDGLPTNLHSLDIRGNMEIWKSMIER 655 (814)
Q Consensus 580 ~~~~~~~~~l~~L~~L~l~~~~~l~~lp-~~~~~l~~L~~L~l~~-~~~~l~--~~~~~~~L~~L~l~~n~~~~~~~~~~ 655 (814)
..+|..+..+++|++|++++|...+..| ..+..+++|+.|++++ .+.... ....+++|++|++++|.......
T Consensus 389 ~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~--- 465 (606)
T 3vq2_A 389 IIMSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTL--- 465 (606)
T ss_dssp EEECCCCTTCTTCCEEECTTSEEESTTTTTTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEE---
T ss_pred ccchhhccCCCCCCeeECCCCccCCccChhhhhccccCCEEECcCCCCCccchhhhcCCCCCCEEECCCCcCCCcch---
Confidence 4455445555555555555553333333 3445555555555555 322211 13345667777777776654211
Q ss_pred ccccCCCCcccEEEEecCCCCCccCCccccccCCCCCCCCCcceEEeccCCCCccc-ccccccCCCCCeEEecCCCCCCc
Q 035579 656 GRGFHRFSSLRHLTIDGCDDDMVSFPPEDKRLGTALPLPASLTDLEIGRFPNLERL-SSSIVDLQNLTELCLRDCPKLKY 734 (814)
Q Consensus 656 ~~~l~~l~~L~~L~l~~~~~~l~~i~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l-~~~~~~l~~L~~L~l~~c~~l~~ 734 (814)
+..+..+++|++|++++| .+..++... +..+++|++|++++ +.++.+ |..+..+++|++|++++| +++.
T Consensus 466 ~~~~~~l~~L~~L~Ls~n--~l~~~~~~~------~~~l~~L~~L~Ls~-N~l~~~~~~~~~~l~~L~~L~l~~N-~l~~ 535 (606)
T 3vq2_A 466 SNVFANTTNLTFLDLSKC--QLEQISWGV------FDTLHRLQLLNMSH-NNLLFLDSSHYNQLYSLSTLDCSFN-RIET 535 (606)
T ss_dssp CSCCTTCTTCCEEECTTS--CCCEECTTT------TTTCTTCCEEECCS-SCCSCEEGGGTTTCTTCCEEECTTS-CCCC
T ss_pred HHhhccCCCCCEEECCCC--cCCccChhh------hcccccCCEEECCC-CcCCCcCHHHccCCCcCCEEECCCC-cCcc
Confidence 155777778888888776 555544332 14577888888888 455555 557777888888888885 5777
Q ss_pred cCCCC--CcCCccEEeecCCch
Q 035579 735 FPEKG--LPSSLLRLSILSCPL 754 (814)
Q Consensus 735 lp~~~--l~~~L~~L~i~~c~~ 754 (814)
+|... ++++|++|++++||.
T Consensus 536 ~p~~~~~l~~~L~~l~l~~N~~ 557 (606)
T 3vq2_A 536 SKGILQHFPKSLAFFNLTNNSV 557 (606)
T ss_dssp EESCGGGSCTTCCEEECCSCCC
T ss_pred cCHhHhhhcccCcEEEccCCCc
Confidence 77641 134688888887763
No 7
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=100.00 E-value=9.5e-36 Score=343.02 Aligned_cols=389 Identities=15% Similarity=0.093 Sum_probs=251.8
Q ss_pred cceEEEcCCCCcchhccchhhhhhcCCCCC--eEEEecCCCcccchhhHHHHHHHHhhhccccccEEEeeccCCcccccc
Q 035579 306 LEELKINDMKEQTYMWKSHNELLQDICSLR--RLTIRSCPKLQSLVAEEEKDQQQQLCELSCRLEYLILSCCEGLVKLPQ 383 (814)
Q Consensus 306 L~~L~~~~l~~~~~~~~~~~~~~~~l~~L~--~L~l~~~~~l~~l~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~~ 383 (814)
++.|+.++++++... ...+..+..+++|+ +|+++++ .+..+++..+.. .+|+.|++++|... +.
T Consensus 152 l~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~l~L~l~~n-~l~~~~~~~~~~---------~~L~~L~l~~~~~~---~~ 217 (606)
T 3t6q_A 152 TEKLKVLDFQNNAIH-YLSKEDMSSLQQATNLSLNLNGN-DIAGIEPGAFDS---------AVFQSLNFGGTQNL---LV 217 (606)
T ss_dssp CTTCCEEECCSSCCC-EECHHHHHTTTTCCSEEEECTTC-CCCEECTTTTTT---------CEEEEEECTTCSCH---HH
T ss_pred CcccCEEEcccCccc-ccChhhhhhhcccceeEEecCCC-ccCccChhHhhh---------ccccccccCCchhH---HH
Confidence 445555555555442 23445567777787 6777775 455554432211 57888888887633 33
Q ss_pred ccCCCCCcc--eEeeecCCCCcc--cCC--CCC--CCCCcEEEecccCCCCCCchhhhcCCCCCccEEEEecCCCCcccc
Q 035579 384 SSLSLCSLR--EIGIYKCSSLVS--FPE--VAL--PSKLEKIHIGACDALKSLPEAWMCDTNSSLEILYIEGCRSLTYIA 455 (814)
Q Consensus 384 ~~~~l~~L~--~L~L~~~~~l~~--~~~--~~~--~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~ 455 (814)
.+..+.++. .+.+..+..... ++. +.. ..+|+.|++++|. +..++...+ ..+++|++|++++|. ++.+|
T Consensus 218 ~~~~l~~~~l~~l~~~~~~~~~~~~i~~~~~~~l~~~~L~~L~l~~n~-l~~~~~~~~-~~l~~L~~L~l~~n~-l~~lp 294 (606)
T 3t6q_A 218 IFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSVESINLQKHY-FFNISSNTF-HCFSGLQELDLTATH-LSELP 294 (606)
T ss_dssp HHHHTTTCEEEEEECCCCTTSCCCCCCGGGGGGGGGSEEEEEECTTCC-CSSCCTTTT-TTCTTCSEEECTTSC-CSCCC
T ss_pred HhhhccccchhheechhhccccccccChhHhchhhcCceeEEEeecCc-cCccCHHHh-ccccCCCEEeccCCc-cCCCC
Confidence 333333333 333333222111 111 111 1279999999998 666666544 788999999999864 33222
Q ss_pred cccCcCccceeeeccccCCcccccccCCCCCCCCCCCCCCccEEeecCCCCcccccccCCCcccccEEEEeccCCcchhh
Q 035579 456 AVQLPSSLKNLQIHGCYNIKTLTVEEGIPSSSSSRYTSSILEHLSIVGCPSLTCIFSKNELPATLESLSVYKCSKLESIA 535 (814)
Q Consensus 456 ~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~l~~~~~~~~~~ 535 (814)
..+. ..++|++|++++|......|
T Consensus 295 -----------------------------~~l~---------------------------~l~~L~~L~l~~n~l~~~~~ 318 (606)
T 3t6q_A 295 -----------------------------SGLV---------------------------GLSTLKKLVLSANKFENLCQ 318 (606)
T ss_dssp -----------------------------SSCC---------------------------SCTTCCEEECTTCCCSBGGG
T ss_pred -----------------------------hhhc---------------------------ccccCCEEECccCCcCcCch
Confidence 1111 11245566666665555556
Q ss_pred HhhcCCCCcceEeecccCCcccccc-cCCCCCCccEEEecCCCCceec--CCCCCCCCCcceEeeccccccccccccccC
Q 035579 536 ERLDNNTSLETIGINFCENLKILPS-GLHNLRQLREITIQRCGNLVSF--PEGGLPCAKLSELRIFQCERLEALPKGLHN 612 (814)
Q Consensus 536 ~~~~~l~~L~~L~L~~n~~~~~~~~-~~~~l~~L~~L~l~~~~~l~~~--~~~~~~l~~L~~L~l~~~~~l~~lp~~~~~ 612 (814)
..+..+++|++|++++|.+.+.+|. .+..+++|++|++++|...... +..+..+++|++|++++|......|..+..
T Consensus 319 ~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~ 398 (606)
T 3t6q_A 319 ISASNFPSLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKE 398 (606)
T ss_dssp GCGGGCTTCSEEECCSCSSCCBCCSSTTTTCTTCCEEECCSSCCCEEEESTTTTTTCTTCCEEECCSCSCEEECTTTTTT
T ss_pred hhhhccCcCCEEECCCCCcccccchhhhhccCcCCEEECCCCccccccCcchhcccCCCCCEEECCCCcCCcCCHHHhcC
Confidence 6777778888888888877765544 3777888888888887443332 556777788888888887555555667778
Q ss_pred CCCcceEEecC-ccCcccc---CCCCCceeEEEecCCcchhhhhhhcccccCCCCcccEEEEecCCCCCcc--CCccccc
Q 035579 613 LTSLQELTIGG-ALPSLEE---DGLPTNLHSLDIRGNMEIWKSMIERGRGFHRFSSLRHLTIDGCDDDMVS--FPPEDKR 686 (814)
Q Consensus 613 l~~L~~L~l~~-~~~~l~~---~~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~l~~--i~~~~~~ 686 (814)
+++|+.|++++ .+..... ...+++|++|++++|......+ ..+..+++|++|++++| .+.. ++...
T Consensus 399 l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~----~~~~~l~~L~~L~L~~n--~l~~~~~~~~~-- 470 (606)
T 3t6q_A 399 CPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSE----QLFDGLPALQHLNLQGN--HFPKGNIQKTN-- 470 (606)
T ss_dssp CTTCSEEECTTCCEECCTTCCTTTTCTTCCEEECTTCCCBTTCT----TTTTTCTTCCEEECTTC--BCGGGEECSSC--
T ss_pred CccCCeEECCCCcCCCcccchhhhCcccCCEEECCCCccCCcCH----HHHhCCCCCCEEECCCC--CCCccccccch--
Confidence 88888888877 4433321 4457899999999998766544 67889999999999997 4433 23211
Q ss_pred cCCCCCCCCCcceEEeccCCCCcccc-cccccCCCCCeEEecCCCCCCccCCCCC--cCCccEEeecCCchhhHhhccCC
Q 035579 687 LGTALPLPASLTDLEIGRFPNLERLS-SSIVDLQNLTELCLRDCPKLKYFPEKGL--PSSLLRLSILSCPLIEEKCRKDG 763 (814)
Q Consensus 687 ~~~~~~~~~~L~~L~l~~~~~l~~l~-~~~~~l~~L~~L~l~~c~~l~~lp~~~l--~~~L~~L~i~~c~~l~~~~~~~~ 763 (814)
.+..+++|++|++++ +.++.++ ..+..+++|++|++++| +++.++...+ +++| +|++++|.-.. ..
T Consensus 471 ---~~~~l~~L~~L~Ls~-n~l~~~~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~l~~l~~L-~L~L~~N~l~~-----~~ 539 (606)
T 3t6q_A 471 ---SLQTLGRLEILVLSF-CDLSSIDQHAFTSLKMMNHVDLSHN-RLTSSSIEALSHLKGI-YLNLASNHISI-----IL 539 (606)
T ss_dssp ---GGGGCTTCCEEECTT-SCCCEECTTTTTTCTTCCEEECCSS-CCCGGGGGGGTTCCSC-EEECCSSCCCC-----CC
T ss_pred ---hhccCCCccEEECCC-CccCccChhhhccccCCCEEECCCC-ccCcCChhHhCccccc-EEECcCCcccc-----cC
Confidence 125689999999999 5777764 58899999999999996 6777655444 6788 99999985221 11
Q ss_pred CccccccCCccEEEeCCeEeecc
Q 035579 764 GQYWDLLTHIPFVRIDDKWVFGE 786 (814)
Q Consensus 764 ~~~~~~~~~i~~~~~~~~~~~~~ 786 (814)
...+..+..+..+++.++.+...
T Consensus 540 ~~~~~~l~~L~~L~l~~N~~~c~ 562 (606)
T 3t6q_A 540 PSLLPILSQQRTINLRQNPLDCT 562 (606)
T ss_dssp GGGHHHHHTSSEEECTTCCEECS
T ss_pred HhhcccCCCCCEEeCCCCCcccc
Confidence 22345567788899998877654
No 8
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=100.00 E-value=1.6e-34 Score=332.89 Aligned_cols=522 Identities=16% Similarity=0.112 Sum_probs=322.4
Q ss_pred ccEEEEecCCCCCCCCC-CCCCCccceeeecCCcCceeeCccccCCCCCCCCCCcceeeccccccccccccCCCCCCccc
Q 035579 145 LVTLKFKDCGVCTTLPS-VGQLSSLKHLTVRGMSRVKSLGSEFYGNDSPIPFPCLETLRFENMQEWEDWIPLRSDQGVEG 223 (814)
Q Consensus 145 L~~L~L~~~~~~~~l~~-l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~ 223 (814)
-++++.+++. .+.+|. +. +++++|++++| .++.++...++ .+++|++|++++ +.++...+.. +..
T Consensus 13 ~~~~~c~~~~-l~~ip~~~~--~~l~~L~Ls~n-~l~~~~~~~~~-----~l~~L~~L~Ls~-n~l~~i~~~~----~~~ 78 (606)
T 3vq2_A 13 NITYQCMDQK-LSKVPDDIP--SSTKNIDLSFN-PLKILKSYSFS-----NFSELQWLDLSR-CEIETIEDKA----WHG 78 (606)
T ss_dssp TTEEECTTSC-CSSCCTTSC--TTCCEEECTTS-CCCEECTTTTT-----TCTTCCEEECTT-CCCCEECTTT----TTT
T ss_pred CCceEccCCC-cccCCCCCC--CCcCEEECCCC-CcCEeChhhcc-----CCccCcEEeCCC-CcccccCHHH----hhc
Confidence 3466666665 455554 32 78999999985 45665543322 288999999988 4566654433 568
Q ss_pred CCcccEEEEccCCCcccCCCCCCCcccceeeccccceeEEcCCCceeeecccccCCCCCceeeccCCccccccCCCCCCC
Q 035579 224 FPKLRELHIISCSKLQGTFPEHLPALEMLVIEGSLCKFEIGGCKKVVWRSATDHLGSQNSVVCRDTSNQVFLAGPLKPRL 303 (814)
Q Consensus 224 l~~L~~L~l~~c~~l~~~lp~~l~~L~~L~l~~~l~~l~l~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 303 (814)
+++|++|++++|. +++..|..+.+++.|+. +++++|... +..+..+
T Consensus 79 l~~L~~L~Ls~n~-l~~~~p~~~~~l~~L~~------L~L~~n~l~---------------------------~~~~~~~ 124 (606)
T 3vq2_A 79 LHHLSNLILTGNP-IQSFSPGSFSGLTSLEN------LVAVETKLA---------------------------SLESFPI 124 (606)
T ss_dssp CTTCCEEECTTCC-CCCCCTTSSTTCTTCCE------EECTTSCCC---------------------------CSSSSCC
T ss_pred hhhcCEeECCCCc-ccccChhhcCCcccCCE------EEccCCccc---------------------------ccccccc
Confidence 8999999999988 76444654443333322 333544321 1122345
Q ss_pred CCcceEEEcCCCCcchhccchhhhhhcCCCCCeEEEecCCCcccchhhHHHHHHHHhhhccccccEEEeeccCCcccccc
Q 035579 304 PKLEELKINDMKEQTYMWKSHNELLQDICSLRRLTIRSCPKLQSLVAEEEKDQQQQLCELSCRLEYLILSCCEGLVKLPQ 383 (814)
Q Consensus 304 ~~L~~L~~~~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~~ 383 (814)
.++..|+.++++++.......+..++.+++|++|+++++ .++.+++.. +..+..+...+++|++++|.+....+.
T Consensus 125 ~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~Ls~n-~l~~~~~~~----~~~l~~L~~~l~~L~l~~n~l~~~~~~ 199 (606)
T 3vq2_A 125 GQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYN-YIQTITVND----LQFLRENPQVNLSLDMSLNPIDFIQDQ 199 (606)
T ss_dssp TTCTTCCEEECCSSCCCCCCCCGGGGTCTTCCEEECCSS-CCCEECTTT----THHHHHCTTCCCEEECTTCCCCEECTT
T ss_pred CCCCCCCEEeCCCCcccceechHhHhhcCCCCEEEccCC-cceecChhh----hhhhhccccccceeeccCCCcceeCcc
Confidence 555555555555554422222344455555555555553 344333321 111111111133555555544322222
Q ss_pred ccCCCCCcceEeeecCCCCcccCCCCCCCCCcEEEecccCCCC-CCchhhhcCCCCCccEEEEecCCC-----Ccccccc
Q 035579 384 SSLSLCSLREIGIYKCSSLVSFPEVALPSKLEKIHIGACDALK-SLPEAWMCDTNSSLEILYIEGCRS-----LTYIAAV 457 (814)
Q Consensus 384 ~~~~l~~L~~L~L~~~~~l~~~~~~~~~~~L~~L~l~~~~~l~-~~~~~~~~~~l~~L~~L~l~~~~~-----l~~~~~~ 457 (814)
.....+|++|++++ |.... ..+..+ ..+++|+.+++..... +..+..
T Consensus 200 -~~~~~~L~~L~L~~-----------------------n~~~~~~~~~~~--~~l~~L~~l~l~~~~~~~~~~l~~~~~- 252 (606)
T 3vq2_A 200 -AFQGIKLHELTLRG-----------------------NFNSSNIMKTCL--QNLAGLHVHRLILGEFKDERNLEIFEP- 252 (606)
T ss_dssp -TTTTCEEEEEEEES-----------------------CCSCHHHHHHHH--HTTTTCEEEEEEEECCTTSCCCSCCCG-
T ss_pred -cccCceeeeeeccC-----------------------CccchhHHHHHh--ccccccccccccccccccCCcccccCh-
Confidence 22222455555554 43221 122222 3444444444432110 000000
Q ss_pred cCcC-----ccceeeeccccCCcccccccCCCCCCCCCCCCCCccEEeecCCCCcccccccCCCcccccEEEEeccCCcc
Q 035579 458 QLPS-----SLKNLQIHGCYNIKTLTVEEGIPSSSSSRYTSSILEHLSIVGCPSLTCIFSKNELPATLESLSVYKCSKLE 532 (814)
Q Consensus 458 ~~~~-----~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~l~~~~~~~ 532 (814)
..+. +++.+.+.....+.. .+|. ...+++|+.++++++.. .. ++.....++|+.|++++|.. +
T Consensus 253 ~~~~~l~~l~l~~l~l~~~~~~~~-----~~~~----~~~l~~L~~L~l~~~~~-~~-l~~l~~~~~L~~L~l~~n~l-~ 320 (606)
T 3vq2_A 253 SIMEGLCDVTIDEFRLTYTNDFSD-----DIVK----FHCLANVSAMSLAGVSI-KY-LEDVPKHFKWQSLSIIRCQL-K 320 (606)
T ss_dssp GGGTTGGGSEEEEEEECCCTTCCG-----GGGS----CGGGTTCSEEEEESCCC-CC-CCCCCTTCCCSEEEEESCCC-S
T ss_pred HHhhhhhhccHhheeccccccccc-----cccc----cccCCCCCEEEecCccc-hh-hhhccccccCCEEEcccccC-c
Confidence 0111 233333322222221 1221 23346677888777654 22 33444556899999999887 7
Q ss_pred hhhHhhcCCCCcceEeecccCCcccccccCCCCCCccEEEecCCCCceec---CCCCCCCCCcceEeecccccccccccc
Q 035579 533 SIAERLDNNTSLETIGINFCENLKILPSGLHNLRQLREITIQRCGNLVSF---PEGGLPCAKLSELRIFQCERLEALPKG 609 (814)
Q Consensus 533 ~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~---~~~~~~l~~L~~L~l~~~~~l~~lp~~ 609 (814)
.+| .+ .+++|+.|++++|...+.. .+..+++|++|++++| .+..+ |..+..+++|++|++++| .+..+|..
T Consensus 321 ~lp-~~-~l~~L~~L~l~~n~~~~~~--~~~~l~~L~~L~ls~n-~l~~~~~~~~~~~~~~~L~~L~L~~n-~l~~~~~~ 394 (606)
T 3vq2_A 321 QFP-TL-DLPFLKSLTLTMNKGSISF--KKVALPSLSYLDLSRN-ALSFSGCCSYSDLGTNSLRHLDLSFN-GAIIMSAN 394 (606)
T ss_dssp SCC-CC-CCSSCCEEEEESCSSCEEC--CCCCCTTCCEEECCSS-CEEEEEECCHHHHCCSCCCEEECCSC-SEEEECCC
T ss_pred ccc-cC-CCCccceeeccCCcCccch--hhccCCCCCEEECcCC-ccCCCcchhhhhccCCcccEeECCCC-ccccchhh
Confidence 788 45 9999999999999776654 5778999999999998 44444 666778899999999999 57778889
Q ss_pred ccCCCCcceEEecC-ccCccc---cCCCCCceeEEEecCCcchhhhhhhcccccCCCCcccEEEEecCCCCCcc--CCcc
Q 035579 610 LHNLTSLQELTIGG-ALPSLE---EDGLPTNLHSLDIRGNMEIWKSMIERGRGFHRFSSLRHLTIDGCDDDMVS--FPPE 683 (814)
Q Consensus 610 ~~~l~~L~~L~l~~-~~~~l~---~~~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~l~~--i~~~ 683 (814)
+..+++|+.|++++ .+...+ ....+++|++|++++|......+ ..+..+++|++|++++| .+.. +|..
T Consensus 395 ~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~----~~~~~l~~L~~L~l~~n--~l~~~~~~~~ 468 (606)
T 3vq2_A 395 FMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFD----GIFLGLTSLNTLKMAGN--SFKDNTLSNV 468 (606)
T ss_dssp CTTCTTCCEEECTTSEEESTTTTTTTTTCTTCCEEECTTSCCEECCT----TTTTTCTTCCEEECTTC--EEGGGEECSC
T ss_pred ccCCCCCCeeECCCCccCCccChhhhhccccCCEEECcCCCCCccch----hhhcCCCCCCEEECCCC--cCCCcchHHh
Confidence 99999999999999 544442 34567999999999999877554 67899999999999997 4443 5655
Q ss_pred ccccCCCCCCCCCcceEEeccCCCCcccc-cccccCCCCCeEEecCCCCCCccCCCCC--cCCccEEeecCCchhhHhhc
Q 035579 684 DKRLGTALPLPASLTDLEIGRFPNLERLS-SSIVDLQNLTELCLRDCPKLKYFPEKGL--PSSLLRLSILSCPLIEEKCR 760 (814)
Q Consensus 684 ~~~~~~~~~~~~~L~~L~l~~~~~l~~l~-~~~~~l~~L~~L~l~~c~~l~~lp~~~l--~~~L~~L~i~~c~~l~~~~~ 760 (814)
. ..+++|++|++++ +.++.++ ..+..+++|++|++++| +++.+++..+ +++|++|++++|. ++.+
T Consensus 469 ~-------~~l~~L~~L~Ls~-n~l~~~~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L~l~~N~-l~~~-- 536 (606)
T 3vq2_A 469 F-------ANTTNLTFLDLSK-CQLEQISWGVFDTLHRLQLLNMSHN-NLLFLDSSHYNQLYSLSTLDCSFNR-IETS-- 536 (606)
T ss_dssp C-------TTCTTCCEEECTT-SCCCEECTTTTTTCTTCCEEECCSS-CCSCEEGGGTTTCTTCCEEECTTSC-CCCE--
T ss_pred h-------ccCCCCCEEECCC-CcCCccChhhhcccccCCEEECCCC-cCCCcCHHHccCCCcCCEEECCCCc-Cccc--
Confidence 4 5789999999999 5677665 47899999999999996 6777744334 7899999999986 3311
Q ss_pred cCCCccccccC-CccEEEeCCeEeec
Q 035579 761 KDGGQYWDLLT-HIPFVRIDDKWVFG 785 (814)
Q Consensus 761 ~~~~~~~~~~~-~i~~~~~~~~~~~~ 785 (814)
...+..+. .+..+++.++.+..
T Consensus 537 ---p~~~~~l~~~L~~l~l~~N~~~c 559 (606)
T 3vq2_A 537 ---KGILQHFPKSLAFFNLTNNSVAC 559 (606)
T ss_dssp ---ESCGGGSCTTCCEEECCSCCCCC
T ss_pred ---CHhHhhhcccCcEEEccCCCccc
Confidence 11134444 47888888876654
No 9
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=100.00 E-value=9.4e-33 Score=328.47 Aligned_cols=522 Identities=16% Similarity=0.082 Sum_probs=287.2
Q ss_pred cEEEeeeCCCCCCccccCCCCCcccEEEEecCCCCCCCC-CCCCCCccceeeecCCcCceeeCccccCCCCCCCCCCcce
Q 035579 122 QFGICGYGGTKFPTWLGDCSFSNLVTLKFKDCGVCTTLP-SVGQLSSLKHLTVRGMSRVKSLGSEFYGNDSPIPFPCLET 200 (814)
Q Consensus 122 ~L~l~~~~~~~~p~~~~~~~l~~L~~L~L~~~~~~~~l~-~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~ 200 (814)
..+.+++..+.+|. + .+++++|+|++|.+....+ .+.++++|++|++++|..+..++...++ .+++|++
T Consensus 8 ~~dcs~~~L~~vP~-l----p~~l~~LdLs~N~i~~i~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~-----~L~~L~~ 77 (844)
T 3j0a_A 8 IAFYRFCNLTQVPQ-V----LNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFR-----NLPNLRI 77 (844)
T ss_dssp EEEESCCCSSCCCS-S----CTTCCEEEEESCCCCEECSSSCSSCCSCSEEEECTTCCCCEECTTTTS-----SCTTCCE
T ss_pred EEEccCCCCCCCCC-C----CCCcCEEECCCCcCCccChhHCcccccCeEEeCCCCCCccccCHHHhc-----CCCCCCE
Confidence 34445555666665 2 3567777777776544333 4677777777777776555555333222 2666667
Q ss_pred eeccccccccccccCCCCCCcccCCcccEEEEccCCCcccCCCCCCCcccceeeccccceeEEcCCCceeeecccccCCC
Q 035579 201 LRFENMQEWEDWIPLRSDQGVEGFPKLRELHIISCSKLQGTFPEHLPALEMLVIEGSLCKFEIGGCKKVVWRSATDHLGS 280 (814)
Q Consensus 201 L~l~~~~~l~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~lp~~l~~L~~L~l~~~l~~l~l~~c~~~~~~~~~~~~~~ 280 (814)
|++++ +.+....+.. +..+++|++|++++|. +++.+|..
T Consensus 78 L~Ls~-N~l~~~~p~~----~~~l~~L~~L~Ls~n~-l~~~~~~~----------------------------------- 116 (844)
T 3j0a_A 78 LDLGS-SKIYFLHPDA----FQGLFHLFELRLYFCG-LSDAVLKD----------------------------------- 116 (844)
T ss_dssp EECTT-CCCCEECTTS----SCSCSSCCCEECTTCC-CSSCCSTT-----------------------------------
T ss_pred EECCC-CcCcccCHhH----ccCCcccCEeeCcCCC-CCcccccC-----------------------------------
Confidence 77666 3444443322 4567777777777776 55333321
Q ss_pred CCceeeccCCccccccCCCCCCCCCcceEEEcCCCCcchhccchhhhhhcCCCCCeEEEecCCCcccchhhHHHHHHHHh
Q 035579 281 QNSVVCRDTSNQVFLAGPLKPRLPKLEELKINDMKEQTYMWKSHNELLQDICSLRRLTIRSCPKLQSLVAEEEKDQQQQL 360 (814)
Q Consensus 281 ~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~~~~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~l 360 (814)
..|.+++.|+.+++++|.+....++..++.+++|++|+++++ .++.+.+..+ ..+
T Consensus 117 --------------------~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N-~i~~~~~~~l----~~l 171 (844)
T 3j0a_A 117 --------------------GYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSN-QIFLVCEHEL----EPL 171 (844)
T ss_dssp --------------------CCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESS-CCCCCCSGGG----HHH
T ss_pred --------------------ccccccCCCCEEECCCCcccccccchhHhhCCCCCEEECCCC-cCCeeCHHHc----ccc
Confidence 001122222222222222211122234566777777777764 3443332221 111
Q ss_pred hhccccccEEEeeccCCccccccccCCCCC------cceEeeecCCCCcccCC----CCCCCCCcEEEecccCC------
Q 035579 361 CELSCRLEYLILSCCEGLVKLPQSSLSLCS------LREIGIYKCSSLVSFPE----VALPSKLEKIHIGACDA------ 424 (814)
Q Consensus 361 ~~~~~~L~~L~L~~~~~~~~~~~~~~~l~~------L~~L~L~~~~~l~~~~~----~~~~~~L~~L~l~~~~~------ 424 (814)
.. ++|+.|++++|.+.+..|..+..+++ |++|++++|......+. .....+++.+.+..+..
T Consensus 172 ~~--~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L~l~~~~~~~~~~~ 249 (844)
T 3j0a_A 172 QG--KTLSFFSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGF 249 (844)
T ss_dssp HH--CSSCCCEECCSBSCCCCCCCCCSSSCTTTTCCBSEEBCSSCCSSTTTTSGGGGTSCSCCBSEEECCSSCCBCSSSC
T ss_pred cC--CccceEECCCCccccccccchhhcCCccccCceeEEecCCCcCchhHHHHHHhhcCcccccceecccccccccccc
Confidence 00 56777777777766666655555544 77777776543222221 11234556666552210
Q ss_pred --CCCCchhhhcCC--CCCccEEEEecCCCCcccccc--cCcCccceeeeccccCCcccccccCCCCCCCCCCCCCCccE
Q 035579 425 --LKSLPEAWMCDT--NSSLEILYIEGCRSLTYIAAV--QLPSSLKNLQIHGCYNIKTLTVEEGIPSSSSSRYTSSILEH 498 (814)
Q Consensus 425 --l~~~~~~~~~~~--l~~L~~L~l~~~~~l~~~~~~--~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~L~~ 498 (814)
+.......+ .+ .++|++|++++|. +..++.. ..+++|+.|+++++. +.. ..|..+ ..+++|++
T Consensus 250 ~~l~~~~~~~f-~~l~~~~L~~L~Ls~n~-l~~~~~~~~~~l~~L~~L~L~~n~-i~~-----~~~~~~---~~l~~L~~ 318 (844)
T 3j0a_A 250 HNIKDPDQNTF-AGLARSSVRHLDLSHGF-VFSLNSRVFETLKDLKVLNLAYNK-INK-----IADEAF---YGLDNLQV 318 (844)
T ss_dssp SSSTTGGGTTT-TTTTTSCCCEEECTTCC-CCEECSCCSSSCCCCCEEEEESCC-CCE-----ECTTTT---TTCSSCCE
T ss_pred cccCCCChhhh-hccccCCccEEECCCCc-ccccChhhhhcCCCCCEEECCCCc-CCC-----CChHHh---cCCCCCCE
Confidence 111111111 11 2556666666643 2222211 233455555555542 211 111111 12345777
Q ss_pred EeecCCCCcccccccCCCcccccEEEEeccCCcchhhHhhcCCCCcceEeecccCCcccccccCCCCCCccEEEecCCCC
Q 035579 499 LSIVGCPSLTCIFSKNELPATLESLSVYKCSKLESIAERLDNNTSLETIGINFCENLKILPSGLHNLRQLREITIQRCGN 578 (814)
Q Consensus 499 L~l~~~~~l~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~~~~ 578 (814)
|+++++.............++|+.|++++|......+..+..+++|++|++++|.+.+. ..+++|+.|++++| .
T Consensus 319 L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~i-----~~~~~L~~L~l~~N-~ 392 (844)
T 3j0a_A 319 LNLSYNLLGELYSSNFYGLPKVAYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDNALTTI-----HFIPSIPDIFLSGN-K 392 (844)
T ss_dssp EEEESCCCSCCCSCSCSSCTTCCEEECCSCCCCCCCSSCSCSCCCCCEEEEETCCSCCC-----SSCCSCSEEEEESC-C
T ss_pred EECCCCCCCccCHHHhcCCCCCCEEECCCCCCCccChhhhcCCCCCCEEECCCCCCCcc-----cCCCCcchhccCCC-C
Confidence 77776643322122334455777777777765555555677777777777777766532 23667777777776 4
Q ss_pred ceecCCCCCCCCCcceEeeccccccccccc--cccCCCCcceEEecC-ccCcccc---CCCCCceeEEEecCCcchhhhh
Q 035579 579 LVSFPEGGLPCAKLSELRIFQCERLEALPK--GLHNLTSLQELTIGG-ALPSLEE---DGLPTNLHSLDIRGNMEIWKSM 652 (814)
Q Consensus 579 l~~~~~~~~~l~~L~~L~l~~~~~l~~lp~--~~~~l~~L~~L~l~~-~~~~l~~---~~~~~~L~~L~l~~n~~~~~~~ 652 (814)
+..+|.. ..+++.|++++| .+..++. .+.++++|+.|++++ .+...+. ...+++|+.|++++|.......
T Consensus 393 l~~l~~~---~~~l~~L~ls~N-~l~~l~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~~ 468 (844)
T 3j0a_A 393 LVTLPKI---NLTANLIHLSEN-RLENLDILYFLLRVPHLQILILNQNRFSSCSGDQTPSENPSLEQLFLGENMLQLAWE 468 (844)
T ss_dssp CCCCCCC---CTTCCEEECCSC-CCCSSTTHHHHTTCTTCCEEEEESCCCCCCCSSSSSCSCTTCCBCEEESCCCSSSCC
T ss_pred ccccccc---ccccceeecccC-ccccCchhhhhhcCCccceeeCCCCcccccccccccccCCccccccCCCCccccccc
Confidence 4455543 346777777777 4444432 345778888888888 5544332 2335788888888887653221
Q ss_pred h-hcccccCCCCcccEEEEecCCCCCccCCccccccCCCCCCCCCcceEEeccCCCCcccccccccCCCCCeEEecCCCC
Q 035579 653 I-ERGRGFHRFSSLRHLTIDGCDDDMVSFPPEDKRLGTALPLPASLTDLEIGRFPNLERLSSSIVDLQNLTELCLRDCPK 731 (814)
Q Consensus 653 ~-~~~~~l~~l~~L~~L~l~~~~~~l~~i~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~l~~L~~L~l~~c~~ 731 (814)
. ..+..+..+++|+.|++++| .+..++...+ ..+++|++|++++ |.++.+|..... ++|+.|++++ ++
T Consensus 469 ~~~~~~~~~~l~~L~~L~Ls~N--~l~~~~~~~~------~~l~~L~~L~Ls~-N~l~~l~~~~~~-~~L~~L~Ls~-N~ 537 (844)
T 3j0a_A 469 TELCWDVFEGLSHLQVLYLNHN--YLNSLPPGVF------SHLTALRGLSLNS-NRLTVLSHNDLP-ANLEILDISR-NQ 537 (844)
T ss_dssp SCCCSSCSSCBCCEECCCCCHH--HHTTCCTTSS------SSCCSCSEEEEES-CCCSSCCCCCCC-SCCCEEEEEE-EC
T ss_pred cccchhhhcCcccccEEECCCC--cccccChhHc------cchhhhheeECCC-CCCCccChhhhh-ccccEEECCC-Cc
Confidence 1 01135777888888888887 6667766542 5678888888888 678887763332 7888888888 46
Q ss_pred CCccCCCCCcCCccEEeecCCch
Q 035579 732 LKYFPEKGLPSSLLRLSILSCPL 754 (814)
Q Consensus 732 l~~lp~~~l~~~L~~L~i~~c~~ 754 (814)
++.+++.. ..+|+.+++.++|.
T Consensus 538 l~~~~~~~-~~~L~~l~l~~Np~ 559 (844)
T 3j0a_A 538 LLAPNPDV-FVSLSVLDITHNKF 559 (844)
T ss_dssp CCCCCSCC-CSSCCEEEEEEECC
T ss_pred CCCCChhH-hCCcCEEEecCCCc
Confidence 77666543 45788888888663
No 10
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=100.00 E-value=4.3e-32 Score=322.77 Aligned_cols=280 Identities=15% Similarity=0.056 Sum_probs=184.5
Q ss_pred ccccEEEeeccCCccccccccCCCCCcceEeeecCCCCcccC-CCCCCCCCcEEEecccCCCCCC-chhhhcCCCCCccE
Q 035579 365 CRLEYLILSCCEGLVKLPQSSLSLCSLREIGIYKCSSLVSFP-EVALPSKLEKIHIGACDALKSL-PEAWMCDTNSSLEI 442 (814)
Q Consensus 365 ~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~L~~~~~l~~~~-~~~~~~~L~~L~l~~~~~l~~~-~~~~~~~~l~~L~~ 442 (814)
++|+.|++++|.+.+..+..+..+++|++|++++|......+ .+..+++|++|++++|. +..+ +..+ ..+++|++
T Consensus 266 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~~--~~l~~L~~ 342 (844)
T 3j0a_A 266 SSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNL-LGELYSSNF--YGLPKVAY 342 (844)
T ss_dssp SCCCEEECTTCCCCEECSCCSSSCCCCCEEEEESCCCCEECTTTTTTCSSCCEEEEESCC-CSCCCSCSC--SSCTTCCE
T ss_pred CCccEEECCCCcccccChhhhhcCCCCCEEECCCCcCCCCChHHhcCCCCCCEEECCCCC-CCccCHHHh--cCCCCCCE
Confidence 567777777776665556666667777777777653322222 24456677777777776 3333 3333 66677777
Q ss_pred EEEecCCCCcccccc--cCcCccceeeeccccCCcccccccCCCCCCCCCCCCCCccEEeecCCCCcccccccCCCcccc
Q 035579 443 LYIEGCRSLTYIAAV--QLPSSLKNLQIHGCYNIKTLTVEEGIPSSSSSRYTSSILEHLSIVGCPSLTCIFSKNELPATL 520 (814)
Q Consensus 443 L~l~~~~~l~~~~~~--~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~L 520 (814)
|++++| .+..++.. ..+++|+.|+++++. ++ .++. +++|+.++++++... . ++. ...++
T Consensus 343 L~L~~N-~i~~~~~~~~~~l~~L~~L~Ls~N~-l~------~i~~-------~~~L~~L~l~~N~l~-~-l~~--~~~~l 403 (844)
T 3j0a_A 343 IDLQKN-HIAIIQDQTFKFLEKLQTLDLRDNA-LT------TIHF-------IPSIPDIFLSGNKLV-T-LPK--INLTA 403 (844)
T ss_dssp EECCSC-CCCCCCSSCSCSCCCCCEEEEETCC-SC------CCSS-------CCSCSEEEEESCCCC-C-CCC--CCTTC
T ss_pred EECCCC-CCCccChhhhcCCCCCCEEECCCCC-CC------cccC-------CCCcchhccCCCCcc-c-ccc--ccccc
Confidence 777765 34444432 234567777766652 22 1221 245777777775533 2 221 23468
Q ss_pred cEEEEeccCCcch-hhHhhcCCCCcceEeecccCCcccccc-cCCCCCCccEEEecCCCCc-----eecCCCCCCCCCcc
Q 035579 521 ESLSVYKCSKLES-IAERLDNNTSLETIGINFCENLKILPS-GLHNLRQLREITIQRCGNL-----VSFPEGGLPCAKLS 593 (814)
Q Consensus 521 ~~L~l~~~~~~~~-~~~~~~~l~~L~~L~L~~n~~~~~~~~-~~~~l~~L~~L~l~~~~~l-----~~~~~~~~~l~~L~ 593 (814)
+.|++++|..... .+..+..+++|+.|++++|.+.+..+. .+..+++|++|++++|... ...+..+..+++|+
T Consensus 404 ~~L~ls~N~l~~l~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~l~~L~ 483 (844)
T 3j0a_A 404 NLIHLSENRLENLDILYFLLRVPHLQILILNQNRFSSCSGDQTPSENPSLEQLFLGENMLQLAWETELCWDVFEGLSHLQ 483 (844)
T ss_dssp CEEECCSCCCCSSTTHHHHTTCTTCCEEEEESCCCCCCCSSSSSCSCTTCCBCEEESCCCSSSCCSCCCSSCSSCBCCEE
T ss_pred ceeecccCccccCchhhhhhcCCccceeeCCCCcccccccccccccCCccccccCCCCccccccccccchhhhcCccccc
Confidence 8888888765542 344567899999999999988765433 3556889999999998432 12234567788999
Q ss_pred eEeeccccccccccccccCCCCcceEEecC-ccCccccCCCCCceeEEEecCCcchhhhhhhcccccCCCCcccEEEEec
Q 035579 594 ELRIFQCERLEALPKGLHNLTSLQELTIGG-ALPSLEEDGLPTNLHSLDIRGNMEIWKSMIERGRGFHRFSSLRHLTIDG 672 (814)
Q Consensus 594 ~L~l~~~~~l~~lp~~~~~l~~L~~L~l~~-~~~~l~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~l~~L~~L~l~~ 672 (814)
.|++++|......|..+..+++|+.|++++ .+..++.....++|+.|++++|.+....+ . .+.+|+.|++++
T Consensus 484 ~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~~L~~L~Ls~N~l~~~~~----~---~~~~L~~l~l~~ 556 (844)
T 3j0a_A 484 VLYLNHNYLNSLPPGVFSHLTALRGLSLNSNRLTVLSHNDLPANLEILDISRNQLLAPNP----D---VFVSLSVLDITH 556 (844)
T ss_dssp CCCCCHHHHTTCCTTSSSSCCSCSEEEEESCCCSSCCCCCCCSCCCEEEEEEECCCCCCS----C---CCSSCCEEEEEE
T ss_pred EEECCCCcccccChhHccchhhhheeECCCCCCCccChhhhhccccEEECCCCcCCCCCh----h---HhCCcCEEEecC
Confidence 999999955555556688899999999998 78877776666889999999988766543 2 345788888888
Q ss_pred C
Q 035579 673 C 673 (814)
Q Consensus 673 ~ 673 (814)
|
T Consensus 557 N 557 (844)
T 3j0a_A 557 N 557 (844)
T ss_dssp E
T ss_pred C
Confidence 6
No 11
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=100.00 E-value=2.2e-32 Score=311.02 Aligned_cols=471 Identities=14% Similarity=0.144 Sum_probs=271.6
Q ss_pred EEeeeCCCCCCccccCCCCCcccEEEEecCCCCCCCC-CCCCCCccceeeecCCcCceeeCccccCCCCCCCCCCcceee
Q 035579 124 GICGYGGTKFPTWLGDCSFSNLVTLKFKDCGVCTTLP-SVGQLSSLKHLTVRGMSRVKSLGSEFYGNDSPIPFPCLETLR 202 (814)
Q Consensus 124 ~l~~~~~~~~p~~~~~~~l~~L~~L~L~~~~~~~~l~-~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~ 202 (814)
+.+++.++.+|..+ .++|++|++++|.+....| .++++++|++|++++| .++.++...++ .+++|++|+
T Consensus 11 ~~~~~~l~~ip~~~----~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n-~i~~~~~~~~~-----~l~~L~~L~ 80 (549)
T 2z81_A 11 DGRSRSFTSIPSGL----TAAMKSLDLSFNKITYIGHGDLRACANLQVLILKSS-RINTIEGDAFY-----SLGSLEHLD 80 (549)
T ss_dssp ECTTSCCSSCCSCC----CTTCCEEECCSSCCCEECSSTTSSCTTCCEEECTTS-CCCEECTTTTT-----TCTTCCEEE
T ss_pred ECCCCccccccccC----CCCccEEECcCCccCccChhhhhcCCcccEEECCCC-CcCccChhhcc-----ccccCCEEE
Confidence 44455667777654 3678888888888544444 4788888888888886 44444432222 266677777
Q ss_pred ccccccccccccCCCCCCcccCCcccEEEEccCCCccc-CCCCCCCcccceeeccccceeEEcCCCceeeecccccCCCC
Q 035579 203 FENMQEWEDWIPLRSDQGVEGFPKLRELHIISCSKLQG-TFPEHLPALEMLVIEGSLCKFEIGGCKKVVWRSATDHLGSQ 281 (814)
Q Consensus 203 l~~~~~l~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~-~lp~~l~~L~~L~l~~~l~~l~l~~c~~~~~~~~~~~~~~~ 281 (814)
+++ +.+++..... ++.+++|++|++++|. +++ ..|.
T Consensus 81 Ls~-n~l~~~~~~~----~~~l~~L~~L~Ls~n~-l~~~~~~~------------------------------------- 117 (549)
T 2z81_A 81 LSD-NHLSSLSSSW----FGPLSSLKYLNLMGNP-YQTLGVTS------------------------------------- 117 (549)
T ss_dssp CTT-SCCCSCCHHH----HTTCTTCCEEECTTCC-CSSSCSSC-------------------------------------
T ss_pred CCC-CccCccCHHH----hccCCCCcEEECCCCc-ccccchhh-------------------------------------
Confidence 766 3444433221 3466777777777766 441 1111
Q ss_pred CceeeccCCccccccCCCCCCCCCcceEEEcCCCCcchhccchhhhhhcCCCCCeEEEecCCCcccchhhHHHHHHHHhh
Q 035579 282 NSVVCRDTSNQVFLAGPLKPRLPKLEELKINDMKEQTYMWKSHNELLQDICSLRRLTIRSCPKLQSLVAEEEKDQQQQLC 361 (814)
Q Consensus 282 ~~~~~~~~~~~~~~~~~~~~~~~~L~~L~~~~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~l~ 361 (814)
.+..+++|++|++++|..+..++... +..+
T Consensus 118 ---------------------------------------------~~~~l~~L~~L~L~~n~~~~~~~~~~----~~~l- 147 (549)
T 2z81_A 118 ---------------------------------------------LFPNLTNLQTLRIGNVETFSEIRRID----FAGL- 147 (549)
T ss_dssp ---------------------------------------------SCTTCTTCCEEEEEESSSCCEECTTT----TTTC-
T ss_pred ---------------------------------------------hhhccCCccEEECCCCccccccCHhh----hhcc-
Confidence 12344455555555544344443221 1222
Q ss_pred hccccccEEEeeccCCccccccccCCCCCcceEeeecCCCCcccCC--CCCCCCCcEEEecccCCCCCCc---hhhhcCC
Q 035579 362 ELSCRLEYLILSCCEGLVKLPQSSLSLCSLREIGIYKCSSLVSFPE--VALPSKLEKIHIGACDALKSLP---EAWMCDT 436 (814)
Q Consensus 362 ~~~~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~L~~~~~l~~~~~--~~~~~~L~~L~l~~~~~l~~~~---~~~~~~~ 436 (814)
++|++|++++|.+.+..|..+..+++|++|++++|. ...++. ...+++|++|++++|. +..++ ..+. ..
T Consensus 148 ---~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~-~~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~~-~~ 221 (549)
T 2z81_A 148 ---TSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLSE-SAFLLEIFADILSSVRYLELRDTN-LARFQFSPLPVD-EV 221 (549)
T ss_dssp ---CEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSB-STTHHHHHHHSTTTBSEEEEESCB-CTTCCCCCCSSC-CC
T ss_pred ---cccCeeeccCCcccccChhhhhccccCceEecccCc-ccccchhhHhhcccccEEEccCCc-cccccccccchh-hh
Confidence 555555555555555555555555555555555532 222221 1224555555555555 22221 1111 33
Q ss_pred CCCccEEEEecCCCCcccc-----cccCcCccceeeeccccCCcccccccCCCC-CCCCCCCCCCccEEeecCCCCcccc
Q 035579 437 NSSLEILYIEGCRSLTYIA-----AVQLPSSLKNLQIHGCYNIKTLTVEEGIPS-SSSSRYTSSILEHLSIVGCPSLTCI 510 (814)
Q Consensus 437 l~~L~~L~l~~~~~l~~~~-----~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~-~~~~~~~~~~L~~L~l~~~~~l~~~ 510 (814)
+++|+.|++++|......+ ......+++.+++.+|...... .++. .......+.+++.+.+.++..-...
T Consensus 222 ~~~L~~L~l~~n~l~~~~~~~l~~~~~~~~~L~~l~l~~~~~~~~~----~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~ 297 (549)
T 2z81_A 222 SSPMKKLAFRGSVLTDESFNELLKLLRYILELSEVEFDDCTLNGLG----DFNPSESDVVSELGKVETVTIRRLHIPQFY 297 (549)
T ss_dssp CCCCCEEEEESCEEEHHHHHHHHGGGGGCTTCCEEEEESCEEECCS----CCCCCTTTCCCCCTTCCEEEEESCBCSCGG
T ss_pred hhcccceeccccccchhHHHHHHHHhhhhccccccccccccccccc----cccccchhhhhhhcccccccccccccchhh
Confidence 4556666665543111100 0122344555555555311100 0100 0111122356777777665322110
Q ss_pred -cc----cCCCcccccEEEEeccCCcchhhHhh-cCCCCcceEeecccCCccccc---ccCCCCCCccEEEecCCCCcee
Q 035579 511 -FS----KNELPATLESLSVYKCSKLESIAERL-DNNTSLETIGINFCENLKILP---SGLHNLRQLREITIQRCGNLVS 581 (814)
Q Consensus 511 -~~----~~~~~~~L~~L~l~~~~~~~~~~~~~-~~l~~L~~L~L~~n~~~~~~~---~~~~~l~~L~~L~l~~~~~l~~ 581 (814)
+. .....++|+.|++++|.. ..+|..+ ..+++|++|++++|.+.+..| ..++.+++|++|++++| .++.
T Consensus 298 ~~~~l~~~~~~~~~L~~L~l~~n~l-~~ip~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N-~l~~ 375 (549)
T 2z81_A 298 LFYDLSTVYSLLEKVKRITVENSKV-FLVPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQN-HLRS 375 (549)
T ss_dssp GSCCCCHHHHHSTTCCEEEEESSCC-CCCCHHHHHHCTTCCEEECCSSCCCHHHHHHHTCTTSSTTCCEEECTTS-CCCC
T ss_pred hcccchhhhhhcccceEEEeccCcc-ccCCHHHHhcCccccEEEccCCccccccccchhhhhccccCcEEEccCC-cccc
Confidence 00 012235789999998764 4666655 578999999999999887653 34778899999999998 5555
Q ss_pred cC---CCCCCCCCcceEeeccccccccccccccCCCCcceEEecC-ccCccccCCCCCceeEEEecCCcchhhhhhhccc
Q 035579 582 FP---EGGLPCAKLSELRIFQCERLEALPKGLHNLTSLQELTIGG-ALPSLEEDGLPTNLHSLDIRGNMEIWKSMIERGR 657 (814)
Q Consensus 582 ~~---~~~~~l~~L~~L~l~~~~~l~~lp~~~~~l~~L~~L~l~~-~~~~l~~~~~~~~L~~L~l~~n~~~~~~~~~~~~ 657 (814)
++ ..+..+++|++|++++| .++.+|..+..+++|++|++++ .+..++.. .+++|++|++++|.+...
T Consensus 376 ~~~~~~~~~~l~~L~~L~Ls~N-~l~~lp~~~~~~~~L~~L~Ls~N~l~~l~~~-~~~~L~~L~Ls~N~l~~~------- 446 (549)
T 2z81_A 376 MQKTGEILLTLKNLTSLDISRN-TFHPMPDSCQWPEKMRFLNLSSTGIRVVKTC-IPQTLEVLDVSNNNLDSF------- 446 (549)
T ss_dssp HHHHHHHGGGCTTCCEEECTTC-CCCCCCSCCCCCTTCCEEECTTSCCSCCCTT-SCTTCSEEECCSSCCSCC-------
T ss_pred cccchhhhhcCCCCCEEECCCC-CCccCChhhcccccccEEECCCCCcccccch-hcCCceEEECCCCChhhh-------
Confidence 54 23667889999999988 6668888888888888888888 66665432 246788888888865432
Q ss_pred ccCCCCcccEEEEecCCCCCccCCccccccCCCCCCCCCcceEEeccCCCCccccc-ccccCCCCCeEEecCCC
Q 035579 658 GFHRFSSLRHLTIDGCDDDMVSFPPEDKRLGTALPLPASLTDLEIGRFPNLERLSS-SIVDLQNLTELCLRDCP 730 (814)
Q Consensus 658 ~l~~l~~L~~L~l~~~~~~l~~i~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~-~~~~l~~L~~L~l~~c~ 730 (814)
...+++|++|++++| .+..+|... .+++|++|++++ |.++.+++ .+..+++|+.|++++|+
T Consensus 447 -~~~l~~L~~L~Ls~N--~l~~ip~~~--------~l~~L~~L~Ls~-N~l~~~~~~~~~~l~~L~~L~l~~N~ 508 (549)
T 2z81_A 447 -SLFLPRLQELYISRN--KLKTLPDAS--------LFPVLLVMKISR-NQLKSVPDGIFDRLTSLQKIWLHTNP 508 (549)
T ss_dssp -CCCCTTCCEEECCSS--CCSSCCCGG--------GCTTCCEEECCS-SCCCCCCTTGGGGCTTCCEEECCSSC
T ss_pred -cccCChhcEEECCCC--ccCcCCCcc--------cCccCCEEecCC-CccCCcCHHHHhcCcccCEEEecCCC
Confidence 246677777777776 566676632 467777777777 56666655 46777777777777764
No 12
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=100.00 E-value=5.8e-31 Score=301.05 Aligned_cols=497 Identities=15% Similarity=0.144 Sum_probs=246.1
Q ss_pred EEeeeCCCCCCccccCCCCCcccEEEEecCCCCCCCC-CCCCCCccceeeecCCcCceeeCccccCCCCCCCCCCcceee
Q 035579 124 GICGYGGTKFPTWLGDCSFSNLVTLKFKDCGVCTTLP-SVGQLSSLKHLTVRGMSRVKSLGSEFYGNDSPIPFPCLETLR 202 (814)
Q Consensus 124 ~l~~~~~~~~p~~~~~~~l~~L~~L~L~~~~~~~~l~-~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~ 202 (814)
+.++.....+|..+. +++++|++++|......+ .+.++++|++|++++| .++.++...++ .+++|++|+
T Consensus 13 ~c~~~~l~~ip~~l~----~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n-~i~~i~~~~~~-----~l~~L~~L~ 82 (570)
T 2z63_A 13 QCMELNFYKIPDNLP----FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRC-EIQTIEDGAYQ-----SLSHLSTLI 82 (570)
T ss_dssp ECCSSCCSSCCSSSC----SSCCEEECCSCCCCEECTTTTTTCSSCCEEECTTC-CCCEECTTTTT-----TCTTCCEEE
T ss_pred EeCCCCccccCCCcc----ccccEEEccCCccCccChhHhhCCCCceEEECCCC-cCCccCccccc-----CchhCCEEe
Confidence 333334445554332 356666666665333222 3556666666666654 34444332221 155666666
Q ss_pred ccccccccccccCCCCCCcccCCcccEEEEccCCCcccCCCC----CCCcccceeeccccceeEEcCCCceeeecccccC
Q 035579 203 FENMQEWEDWIPLRSDQGVEGFPKLRELHIISCSKLQGTFPE----HLPALEMLVIEGSLCKFEIGGCKKVVWRSATDHL 278 (814)
Q Consensus 203 l~~~~~l~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~lp~----~l~~L~~L~l~~~l~~l~l~~c~~~~~~~~~~~~ 278 (814)
+++ +.++...+.. +..+++|++|++++|. ++ .++. .+++|+.|++ ++|.
T Consensus 83 L~~-n~l~~~~~~~----~~~l~~L~~L~L~~n~-l~-~l~~~~~~~l~~L~~L~L---------~~n~----------- 135 (570)
T 2z63_A 83 LTG-NPIQSLALGA----FSGLSSLQKLVAVETN-LA-SLENFPIGHLKTLKELNV---------AHNL----------- 135 (570)
T ss_dssp CTT-CCCCEECTTT----TTTCTTCCEEECTTSC-CC-CSTTCSCTTCTTCCEEEC---------CSSC-----------
T ss_pred CcC-CcCCccCHhh----hcCccccccccccccc-cc-cCCCccccccccccEEec---------CCCc-----------
Confidence 655 2344333222 3456666666666665 44 3322 2223333333 2221
Q ss_pred CCCCceeeccCCccccccC-CCCCCCCCcceEEEcCCCCcchhccchhhhhhcCCCC----CeEEEecCCCcccchhhHH
Q 035579 279 GSQNSVVCRDTSNQVFLAG-PLKPRLPKLEELKINDMKEQTYMWKSHNELLQDICSL----RRLTIRSCPKLQSLVAEEE 353 (814)
Q Consensus 279 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~L~~L~~~~l~~~~~~~~~~~~~~~~l~~L----~~L~l~~~~~l~~l~~~~~ 353 (814)
+.+ .+|..|.++++|+.++++++... ..++..+..+++| +.|+++++ .+..+++..+
T Consensus 136 ----------------l~~~~lp~~~~~l~~L~~L~l~~n~l~-~~~~~~~~~l~~L~~~~~~L~l~~n-~l~~~~~~~~ 197 (570)
T 2z63_A 136 ----------------IQSFKLPEYFSNLTNLEHLDLSSNKIQ-SIYCTDLRVLHQMPLLNLSLDLSLN-PMNFIQPGAF 197 (570)
T ss_dssp ----------------CCCCCCCGGGGGCTTCCEEECTTSCCC-EECGGGGHHHHTCTTCCCEEECTTC-CCCEECTTTT
T ss_pred ----------------cceecChhhhcccCCCCEEeCcCCccc-eecHHHccchhccchhhhhcccCCC-CceecCHHHh
Confidence 111 12334455555555555555442 2233344555555 56666664 4444443321
Q ss_pred HHHHHHhhhccccccEEEeeccCCc-cccccccCCCCCcceEeeecC-----CCCcccCC--CCCC--CCCcEEEeccc-
Q 035579 354 KDQQQQLCELSCRLEYLILSCCEGL-VKLPQSSLSLCSLREIGIYKC-----SSLVSFPE--VALP--SKLEKIHIGAC- 422 (814)
Q Consensus 354 ~~~~~~l~~~~~~L~~L~L~~~~~~-~~~~~~~~~l~~L~~L~L~~~-----~~l~~~~~--~~~~--~~L~~L~l~~~- 422 (814)
.. .+|++|++++|... ..++..+..+++++.+.+... ..+..++. +..+ ..++.++++++
T Consensus 198 ~~---------~~L~~L~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~l~~l~l~~l~l~~~~ 268 (570)
T 2z63_A 198 KE---------IRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLD 268 (570)
T ss_dssp TT---------CEEEEEEEESCCSCTTHHHHHHHTTTTCEEEEEEEEECCCCSSCEECCTTTTGGGGGSEEEEEEEEETT
T ss_pred cc---------CcceeEecccccccccchhhhhcCccccceeeeccccccCchhhhhcchhhhccccccchhhhhhhcch
Confidence 10 35666666665322 123334444555544433210 11112221 1111 13566666666
Q ss_pred CCCCCCchhhhcCCCCCccEEEEecCCCCcccccccCcCccceeeeccccCCcccccccCCCCCCCCCCCCCCccEEeec
Q 035579 423 DALKSLPEAWMCDTNSSLEILYIEGCRSLTYIAAVQLPSSLKNLQIHGCYNIKTLTVEEGIPSSSSSRYTSSILEHLSIV 502 (814)
Q Consensus 423 ~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~ 502 (814)
......+..+ ..+++|++|++++|. ++.++......+|+.|++.+|. +. .+|.. .+++|++|+++
T Consensus 269 ~~~~~~~~~~--~~l~~L~~L~l~~~~-l~~l~~~~~~~~L~~L~l~~n~-~~------~l~~~-----~l~~L~~L~l~ 333 (570)
T 2z63_A 269 YYLDDIIDLF--NCLTNVSSFSLVSVT-IERVKDFSYNFGWQHLELVNCK-FG------QFPTL-----KLKSLKRLTFT 333 (570)
T ss_dssp EEESCSTTTT--GGGTTCSEEEEESCE-ECSCCBCCSCCCCSEEEEESCB-CS------SCCBC-----BCSSCCEEEEE
T ss_pred hhhhhchhhh--cCcCcccEEEecCcc-chhhhhhhccCCccEEeeccCc-cc------ccCcc-----cccccCEEeCc
Confidence 3223344444 667888888888864 4445443211267777777663 22 22221 12345555555
Q ss_pred CCCCcccccccCCCcccccEEEEeccCCcchh--hHhhcCCCCcceEeecccCCcccccccCCCCCCccEEEecCCCCce
Q 035579 503 GCPSLTCIFSKNELPATLESLSVYKCSKLESI--AERLDNNTSLETIGINFCENLKILPSGLHNLRQLREITIQRCGNLV 580 (814)
Q Consensus 503 ~~~~l~~~~~~~~~~~~L~~L~l~~~~~~~~~--~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~~~~l~ 580 (814)
++..... ++. ..+++|+.|++++|...... +..+..+++|++|++++|.+.+..+. +..+++|++|++++|....
T Consensus 334 ~n~~~~~-~~~-~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~-~~~l~~L~~L~l~~n~l~~ 410 (570)
T 2z63_A 334 SNKGGNA-FSE-VDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSN-FLGLEQLEHLDFQHSNLKQ 410 (570)
T ss_dssp SCBSCCB-CCC-CBCTTCCEEECCSSCCBEEEEEEHHHHTCSCCCEEECCSCSEEEEEEE-EETCTTCCEEECTTSEEES
T ss_pred CCccccc-ccc-ccCCCCCEEeCcCCccCccccccccccccCccCEEECCCCcccccccc-ccccCCCCEEEccCCcccc
Confidence 5443222 111 23334555555554433221 34444555555555555544433322 4445555555555542221
Q ss_pred ecC-CCCCCCCCcceEeeccccccccccccccCCCCcceEEecCccCccccCCCCCceeEEEecCCcchhhhhhhccccc
Q 035579 581 SFP-EGGLPCAKLSELRIFQCERLEALPKGLHNLTSLQELTIGGALPSLEEDGLPTNLHSLDIRGNMEIWKSMIERGRGF 659 (814)
Q Consensus 581 ~~~-~~~~~l~~L~~L~l~~~~~l~~lp~~~~~l~~L~~L~l~~~~~~l~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~l 659 (814)
..+ ..+..+++|++|++++|......|..+ ..+++|++|++++|....... |..+
T Consensus 411 ~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~---------------------~~l~~L~~L~l~~n~l~~~~~---p~~~ 466 (570)
T 2z63_A 411 MSEFSVFLSLRNLIYLDISHTHTRVAFNGIF---------------------NGLSSLEVLKMAGNSFQENFL---PDIF 466 (570)
T ss_dssp CTTSCTTTTCTTCCEEECTTSCCEECCTTTT---------------------TTCTTCCEEECTTCEEGGGEE---CSCC
T ss_pred ccchhhhhcCCCCCEEeCcCCcccccchhhh---------------------hcCCcCcEEECcCCcCccccc---hhhh
Confidence 112 133444455555555543333333333 335667777777776652211 1567
Q ss_pred CCCCcccEEEEecCCCCCccC-CccccccCCCCCCCCCcceEEeccCCCCccccc-ccccCCCCCeEEecCCCCCCccC
Q 035579 660 HRFSSLRHLTIDGCDDDMVSF-PPEDKRLGTALPLPASLTDLEIGRFPNLERLSS-SIVDLQNLTELCLRDCPKLKYFP 736 (814)
Q Consensus 660 ~~l~~L~~L~l~~~~~~l~~i-~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~-~~~~l~~L~~L~l~~c~~l~~lp 736 (814)
..+++|++|++++| .+..+ |... ..+++|++|++++ +.++.++. .+..+++|+.|++++|+--...|
T Consensus 467 ~~l~~L~~L~l~~n--~l~~~~~~~~-------~~l~~L~~L~l~~-n~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~ 535 (570)
T 2z63_A 467 TELRNLTFLDLSQC--QLEQLSPTAF-------NSLSSLQVLNMAS-NQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 535 (570)
T ss_dssp TTCTTCCEEECTTS--CCCEECTTTT-------TTCTTCCEEECCS-SCCSCCCTTTTTTCTTCCEEECCSSCBCCCTT
T ss_pred hcccCCCEEECCCC--ccccCChhhh-------hcccCCCEEeCCC-CcCCCCCHHHhhcccCCcEEEecCCcccCCCc
Confidence 88888888888886 55555 4333 4678899999998 57777765 67889999999999976444444
No 13
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.98 E-value=4.9e-31 Score=299.94 Aligned_cols=391 Identities=16% Similarity=0.169 Sum_probs=282.4
Q ss_pred hhhhhhcCCCCCeEEEecCCCcccchhhHHHHHHHHhhhccccccEEEeeccCCccccc-cccCCCCCcceEeeecCCCC
Q 035579 324 HNELLQDICSLRRLTIRSCPKLQSLVAEEEKDQQQQLCELSCRLEYLILSCCEGLVKLP-QSSLSLCSLREIGIYKCSSL 402 (814)
Q Consensus 324 ~~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~-~~~~~l~~L~~L~L~~~~~l 402 (814)
++..+..+++|++|++++| .++.+... ..+..+ ++|++|++++|...+.+| ..+..+++|++|++++|...
T Consensus 90 ~~~~~~~l~~L~~L~Ls~n-~l~~~~~~---~~~~~l----~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~ 161 (549)
T 2z81_A 90 SSSWFGPLSSLKYLNLMGN-PYQTLGVT---SLFPNL----TNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLR 161 (549)
T ss_dssp CHHHHTTCTTCCEEECTTC-CCSSSCSS---CSCTTC----TTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCC
T ss_pred CHHHhccCCCCcEEECCCC-cccccchh---hhhhcc----CCccEEECCCCccccccCHhhhhcccccCeeeccCCccc
Confidence 3444678888999999886 45433211 013333 899999999998667666 57899999999999997655
Q ss_pred cccC-CCCCCCCCcEEEecccCCCCCCchhhhcCCCCCccEEEEecCCCCccc-----ccccCcCccceeeeccccCCcc
Q 035579 403 VSFP-EVALPSKLEKIHIGACDALKSLPEAWMCDTNSSLEILYIEGCRSLTYI-----AAVQLPSSLKNLQIHGCYNIKT 476 (814)
Q Consensus 403 ~~~~-~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~~-----~~~~~~~~L~~L~l~~~~~l~~ 476 (814)
...| .+..+++|+.|++++|. ...++..++ ..+++|++|++++|. ++.+ +....+++|+.|++.++. +..
T Consensus 162 ~~~~~~l~~l~~L~~L~l~~n~-~~~~~~~~~-~~l~~L~~L~L~~n~-l~~~~~~~~~~~~~~~~L~~L~l~~n~-l~~ 237 (549)
T 2z81_A 162 NYQSQSLKSIRDIHHLTLHLSE-SAFLLEIFA-DILSSVRYLELRDTN-LARFQFSPLPVDEVSSPMKKLAFRGSV-LTD 237 (549)
T ss_dssp EECTTTTTTCSEEEEEEEECSB-STTHHHHHH-HSTTTBSEEEEESCB-CTTCCCCCCSSCCCCCCCCEEEEESCE-EEH
T ss_pred ccChhhhhccccCceEecccCc-ccccchhhH-hhcccccEEEccCCc-cccccccccchhhhhhcccceeccccc-cch
Confidence 4444 46678999999999998 666666654 568999999999975 4332 223456789999988763 221
Q ss_pred cccccCCCCCCCCCCCCCCccEEeecCCCCccc--c----cccCCCcccccEEEEeccCCcch-----hhHhhcCCCCcc
Q 035579 477 LTVEEGIPSSSSSRYTSSILEHLSIVGCPSLTC--I----FSKNELPATLESLSVYKCSKLES-----IAERLDNNTSLE 545 (814)
Q Consensus 477 ~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~--~----~~~~~~~~~L~~L~l~~~~~~~~-----~~~~~~~l~~L~ 545 (814)
.... .++.. ...++.|+.+++++|..... + .......++++.|++.++..... ++..+....+|+
T Consensus 238 ~~~~-~l~~~---~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~l~~~~~~~~~L~ 313 (549)
T 2z81_A 238 ESFN-ELLKL---LRYILELSEVEFDDCTLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVK 313 (549)
T ss_dssp HHHH-HHHGG---GGGCTTCCEEEEESCEEECCSCCCCCTTTCCCCCTTCCEEEEESCBCSCGGGSCCCCHHHHHSTTCC
T ss_pred hHHH-HHHHH---hhhhccccccccccccccccccccccchhhhhhhcccccccccccccchhhhcccchhhhhhcccce
Confidence 1000 01111 11235789999988753321 0 11123456899999988764332 233345567899
Q ss_pred eEeecccCCcccccccC-CCCCCccEEEecCCCCceecC---CCCCCCCCcceEeecccccccccc---ccccCCCCcce
Q 035579 546 TIGINFCENLKILPSGL-HNLRQLREITIQRCGNLVSFP---EGGLPCAKLSELRIFQCERLEALP---KGLHNLTSLQE 618 (814)
Q Consensus 546 ~L~L~~n~~~~~~~~~~-~~l~~L~~L~l~~~~~l~~~~---~~~~~l~~L~~L~l~~~~~l~~lp---~~~~~l~~L~~ 618 (814)
.|++++|.+. .+|..+ ..+++|++|++++|.....+| ..+..+++|++|++++| .++.++ ..+..+++|++
T Consensus 314 ~L~l~~n~l~-~ip~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~~~l~~L~~ 391 (549)
T 2z81_A 314 RITVENSKVF-LVPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQN-HLRSMQKTGEILLTLKNLTS 391 (549)
T ss_dssp EEEEESSCCC-CCCHHHHHHCTTCCEEECCSSCCCHHHHHHHTCTTSSTTCCEEECTTS-CCCCHHHHHHHGGGCTTCCE
T ss_pred EEEeccCccc-cCCHHHHhcCccccEEEccCCccccccccchhhhhccccCcEEEccCC-cccccccchhhhhcCCCCCE
Confidence 9999999875 556555 579999999999996555443 34677899999999999 555554 35789999999
Q ss_pred EEecC-ccCcccc-CCCCCceeEEEecCCcchhhhhhhcccccCCCCcccEEEEecCCCCCccCCccccccCCCCCCCCC
Q 035579 619 LTIGG-ALPSLEE-DGLPTNLHSLDIRGNMEIWKSMIERGRGFHRFSSLRHLTIDGCDDDMVSFPPEDKRLGTALPLPAS 696 (814)
Q Consensus 619 L~l~~-~~~~l~~-~~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~l~~i~~~~~~~~~~~~~~~~ 696 (814)
|++++ .+..+|. ...+++|++|++++|.+..... . ..++|++|++++| .+..++. .+++
T Consensus 392 L~Ls~N~l~~lp~~~~~~~~L~~L~Ls~N~l~~l~~-----~--~~~~L~~L~Ls~N--~l~~~~~----------~l~~ 452 (549)
T 2z81_A 392 LDISRNTFHPMPDSCQWPEKMRFLNLSSTGIRVVKT-----C--IPQTLEVLDVSNN--NLDSFSL----------FLPR 452 (549)
T ss_dssp EECTTCCCCCCCSCCCCCTTCCEEECTTSCCSCCCT-----T--SCTTCSEEECCSS--CCSCCCC----------CCTT
T ss_pred EECCCCCCccCChhhcccccccEEECCCCCcccccc-----h--hcCCceEEECCCC--Chhhhcc----------cCCh
Confidence 99999 7777775 4567999999999998654321 1 1368999999997 6666552 4689
Q ss_pred cceEEeccCCCCcccccccccCCCCCeEEecCCCCCCccCCCCC--cCCccEEeecCCch
Q 035579 697 LTDLEIGRFPNLERLSSSIVDLQNLTELCLRDCPKLKYFPEKGL--PSSLLRLSILSCPL 754 (814)
Q Consensus 697 L~~L~l~~~~~l~~l~~~~~~l~~L~~L~l~~c~~l~~lp~~~l--~~~L~~L~i~~c~~ 754 (814)
|++|++++ |+++.+|. ...+++|+.|++++| +++.+++..+ +++|++|++++||.
T Consensus 453 L~~L~Ls~-N~l~~ip~-~~~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L~l~~N~~ 509 (549)
T 2z81_A 453 LQELYISR-NKLKTLPD-ASLFPVLLVMKISRN-QLKSVPDGIFDRLTSLQKIWLHTNPW 509 (549)
T ss_dssp CCEEECCS-SCCSSCCC-GGGCTTCCEEECCSS-CCCCCCTTGGGGCTTCCEEECCSSCB
T ss_pred hcEEECCC-CccCcCCC-cccCccCCEEecCCC-ccCCcCHHHHhcCcccCEEEecCCCc
Confidence 99999999 68999996 567999999999995 7888887654 78999999999873
No 14
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.98 E-value=2.5e-31 Score=304.11 Aligned_cols=262 Identities=15% Similarity=0.078 Sum_probs=172.9
Q ss_pred cccEEEeecc-CCccccccccCCCCCcceEeeecCCCCcccCC-CCCCCCCcEEEecccCCCCCCchhhhcCCCCCccEE
Q 035579 366 RLEYLILSCC-EGLVKLPQSSLSLCSLREIGIYKCSSLVSFPE-VALPSKLEKIHIGACDALKSLPEAWMCDTNSSLEIL 443 (814)
Q Consensus 366 ~L~~L~L~~~-~~~~~~~~~~~~l~~L~~L~L~~~~~l~~~~~-~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L 443 (814)
.++.++++++ ...+.++..+..+++|++|++++|. ++.+|. +..+ +|++|++++|. +..+|. ..+++|+.|
T Consensus 258 ~l~~l~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~-l~~l~~~~~~~-~L~~L~l~~n~-~~~l~~----~~l~~L~~L 330 (570)
T 2z63_A 258 TIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVT-IERVKDFSYNF-GWQHLELVNCK-FGQFPT----LKLKSLKRL 330 (570)
T ss_dssp EEEEEEEEETTEEESCSTTTTGGGTTCSEEEEESCE-ECSCCBCCSCC-CCSEEEEESCB-CSSCCB----CBCSSCCEE
T ss_pred chhhhhhhcchhhhhhchhhhcCcCcccEEEecCcc-chhhhhhhccC-CccEEeeccCc-ccccCc----ccccccCEE
Confidence 4667777776 4445566677777888888887753 445553 3335 78888888777 556655 346777777
Q ss_pred EEecCCCCcccccccCcCccceeeeccccCCcccccccCCCCCCCCCCCCCCccEEeecCCCCcccc--cccCCCccccc
Q 035579 444 YIEGCRSLTYIAAVQLPSSLKNLQIHGCYNIKTLTVEEGIPSSSSSRYTSSILEHLSIVGCPSLTCI--FSKNELPATLE 521 (814)
Q Consensus 444 ~l~~~~~l~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~--~~~~~~~~~L~ 521 (814)
++++|.....++. ..+++|++|+++++ ...... .......++|+
T Consensus 331 ~l~~n~~~~~~~~-~~~~~L~~L~l~~n---------------------------------~l~~~~~~~~~~~~~~~L~ 376 (570)
T 2z63_A 331 TFTSNKGGNAFSE-VDLPSLEFLDLSRN---------------------------------GLSFKGCCSQSDFGTTSLK 376 (570)
T ss_dssp EEESCBSCCBCCC-CBCTTCCEEECCSS---------------------------------CCBEEEEEEHHHHTCSCCC
T ss_pred eCcCCcccccccc-ccCCCCCEEeCcCC---------------------------------ccCccccccccccccCccC
Confidence 7777653333322 23333555544443 221110 01112234677
Q ss_pred EEEEeccCCcchhhHhhcCCCCcceEeecccCCccccc-ccCCCCCCccEEEecCCCCceecCCCCCCCCCcceEeeccc
Q 035579 522 SLSVYKCSKLESIAERLDNNTSLETIGINFCENLKILP-SGLHNLRQLREITIQRCGNLVSFPEGGLPCAKLSELRIFQC 600 (814)
Q Consensus 522 ~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~-~~~~~l~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~~ 600 (814)
.|++++|...... ..+..+++|+.|++++|.+.+..+ ..+..+++|++|++++|......|..+..+++|++|++++|
T Consensus 377 ~L~l~~n~l~~~~-~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n 455 (570)
T 2z63_A 377 YLDLSFNGVITMS-SNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGN 455 (570)
T ss_dssp EEECCSCSEEEEE-EEEETCTTCCEEECTTSEEESCTTSCTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTC
T ss_pred EEECCCCcccccc-ccccccCCCCEEEccCCccccccchhhhhcCCCCCEEeCcCCcccccchhhhhcCCcCcEEECcCC
Confidence 7777776544433 337788888888888888776655 45777888888888888655556667777888888888888
Q ss_pred ccc-ccccccccCCCCcceEEecC-ccCcccc--CCCCCceeEEEecCCcchhhhhhhcccccCCCCcccEEEEecC
Q 035579 601 ERL-EALPKGLHNLTSLQELTIGG-ALPSLEE--DGLPTNLHSLDIRGNMEIWKSMIERGRGFHRFSSLRHLTIDGC 673 (814)
Q Consensus 601 ~~l-~~lp~~~~~l~~L~~L~l~~-~~~~l~~--~~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~l~~L~~L~l~~~ 673 (814)
... ..+|..+..+++|+.|++++ .+..+.. ...+++|++|++++|......+ ..+..+++|+.|++++|
T Consensus 456 ~l~~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~----~~~~~l~~L~~L~l~~N 528 (570)
T 2z63_A 456 SFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLKSVPD----GIFDRLTSLQKIWLHTN 528 (570)
T ss_dssp EEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCT----TTTTTCTTCCEEECCSS
T ss_pred cCccccchhhhhcccCCCEEECCCCccccCChhhhhcccCCCEEeCCCCcCCCCCH----HHhhcccCCcEEEecCC
Confidence 544 35777788888888888888 6655522 4456888888888887766543 56788889999999886
No 15
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.97 E-value=3.3e-31 Score=299.02 Aligned_cols=442 Identities=16% Similarity=0.123 Sum_probs=232.2
Q ss_pred ccEEEeeeCCCCCCccccCCCCCcccEEEEecCCCCCCCC-CCCCCCccceeeecCCcCceeeCccccCCCCCCCCCCcc
Q 035579 121 EQFGICGYGGTKFPTWLGDCSFSNLVTLKFKDCGVCTTLP-SVGQLSSLKHLTVRGMSRVKSLGSEFYGNDSPIPFPCLE 199 (814)
Q Consensus 121 ~~L~l~~~~~~~~p~~~~~~~l~~L~~L~L~~~~~~~~l~-~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~ 199 (814)
++++++++.++.+|..+. ++|++|++++|.+....| .+.++++|++|++++|. ++.+....++ .+++|+
T Consensus 3 ~~l~ls~n~l~~ip~~~~----~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~~~~~-----~l~~L~ 72 (520)
T 2z7x_B 3 FLVDRSKNGLIHVPKDLS----QKTTILNISQNYISELWTSDILSLSKLRILIISHNR-IQYLDISVFK-----FNQELE 72 (520)
T ss_dssp CEEECTTSCCSSCCCSCC----TTCSEEECCSSCCCCCCHHHHTTCTTCCEEECCSSC-CCEEEGGGGT-----TCTTCC
T ss_pred ceEecCCCCccccccccc----ccccEEECCCCcccccChhhccccccccEEecCCCc-cCCcChHHhh-----cccCCC
Confidence 467778888888886553 788888888887544443 47788888888888753 4333222211 155555
Q ss_pred eeeccccccccccccCCCCCCcccCCcccEEEEccCCCcccCCCCCCCcccceeeccccceeEEcCCCceeeecccccCC
Q 035579 200 TLRFENMQEWEDWIPLRSDQGVEGFPKLRELHIISCSKLQGTFPEHLPALEMLVIEGSLCKFEIGGCKKVVWRSATDHLG 279 (814)
Q Consensus 200 ~L~l~~~~~l~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~lp~~l~~L~~L~l~~~l~~l~l~~c~~~~~~~~~~~~~ 279 (814)
+|++++ +.++.+.. . .+++|++|++++|. +++ +
T Consensus 73 ~L~Ls~-N~l~~lp~------~-~l~~L~~L~L~~N~-l~~-~------------------------------------- 105 (520)
T 2z7x_B 73 YLDLSH-NKLVKISC------H-PTVNLKHLDLSFNA-FDA-L------------------------------------- 105 (520)
T ss_dssp EEECCS-SCCCEEEC------C-CCCCCSEEECCSSC-CSS-C-------------------------------------
T ss_pred EEecCC-CceeecCc------c-ccCCccEEeccCCc-ccc-c-------------------------------------
Confidence 555555 33433221 1 45555555555554 331 0
Q ss_pred CCCceeeccCCccccccCCCCCCCCCcceEEEcCCCCcchhccchhhhhhcCCCCCeEEEecCCCcccchhhHHHHHHHH
Q 035579 280 SQNSVVCRDTSNQVFLAGPLKPRLPKLEELKINDMKEQTYMWKSHNELLQDICSLRRLTIRSCPKLQSLVAEEEKDQQQQ 359 (814)
Q Consensus 280 ~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~~~~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~ 359 (814)
..+..++.+++|++|+++++ .+... .+..
T Consensus 106 -------------------------------------------~~p~~~~~l~~L~~L~L~~n-~l~~~-------~~~~ 134 (520)
T 2z7x_B 106 -------------------------------------------PICKEFGNMSQLKFLGLSTT-HLEKS-------SVLP 134 (520)
T ss_dssp -------------------------------------------CCCGGGGGCTTCCEEEEEES-SCCGG-------GGGG
T ss_pred -------------------------------------------cchhhhccCCcceEEEecCc-ccchh-------hccc
Confidence 11223466777777777775 34331 1222
Q ss_pred hhhccccc--cEEEeeccCC--ccccccccCCCCC-cceEeeecCCCCcccCC--CCCCCCCcEEEecccC-------CC
Q 035579 360 LCELSCRL--EYLILSCCEG--LVKLPQSSLSLCS-LREIGIYKCSSLVSFPE--VALPSKLEKIHIGACD-------AL 425 (814)
Q Consensus 360 l~~~~~~L--~~L~L~~~~~--~~~~~~~~~~l~~-L~~L~L~~~~~l~~~~~--~~~~~~L~~L~l~~~~-------~l 425 (814)
+ ++| ++|++++|.+ .+..|..+..+.. ...+++++|.....++. +..+++|+.+++++|. ..
T Consensus 135 l----~~L~L~~L~l~~n~l~~~~~~~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~ 210 (520)
T 2z7x_B 135 I----AHLNISKVLLVLGETYGEKEDPEGLQDFNTESLHIVFPTNKEFHFILDVSVKTVANLELSNIKCVLEDNKCSYFL 210 (520)
T ss_dssp G----TTSCEEEEEEEECTTTTSSCCTTTTTTCCEEEEEEECCSSSCCCCCCCCCCTTCSEEEECCEEECCSTTTTHHHH
T ss_pred c----ccceeeEEEeecccccccccccccccccccceEEEEeccCcchhhhhhhhhhcccceeeccccccccccccceee
Confidence 3 566 8888888876 5566665555442 22345555544444432 2336666666666654 11
Q ss_pred CCCchhhhcCCCCCccEEEEecCCCCcc----cccccCcCccceeeeccccCCcccccccCCCCCCCCCCCCCCccEEee
Q 035579 426 KSLPEAWMCDTNSSLEILYIEGCRSLTY----IAAVQLPSSLKNLQIHGCYNIKTLTVEEGIPSSSSSRYTSSILEHLSI 501 (814)
Q Consensus 426 ~~~~~~~~~~~l~~L~~L~l~~~~~l~~----~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~L~~L~l 501 (814)
+.++ .+ ..+++|+.|++++|..-.. +......++|+.|
T Consensus 211 ~~~~-~l--~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~~L~~L----------------------------------- 252 (520)
T 2z7x_B 211 SILA-KL--QTNPKLSNLTLNNIETTWNSFIRILQLVWHTTVWYF----------------------------------- 252 (520)
T ss_dssp HHHH-GG--GGCTTCCEEEEEEEEEEHHHHHHHHHHHHTSSCSEE-----------------------------------
T ss_pred cchh-hh--ccccchhhccccccccCHHHHHHHHHHhhhCcccEE-----------------------------------
Confidence 2222 22 4556666666665431110 0000011233333
Q ss_pred cCCCCcccccccCCCcccccEEEEeccCCcchhhHhh-----cCCCCcceEeecccCCccccc-ccCCCC---CCccEEE
Q 035579 502 VGCPSLTCIFSKNELPATLESLSVYKCSKLESIAERL-----DNNTSLETIGINFCENLKILP-SGLHNL---RQLREIT 572 (814)
Q Consensus 502 ~~~~~l~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~-----~~l~~L~~L~L~~n~~~~~~~-~~~~~l---~~L~~L~ 572 (814)
++++|...+.+|..+ +.+++|+.+++++|.+ .+| ..+..+ ++|+.|+
T Consensus 253 ----------------------~l~~n~l~~~~p~~~~~~~~~~l~~L~~l~l~~n~~--~~p~~~~~~~~~~~~L~~L~ 308 (520)
T 2z7x_B 253 ----------------------SISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVF--GFPQSYIYEIFSNMNIKNFT 308 (520)
T ss_dssp ----------------------EEEEEEEESCCCCCCCCCCSCCCCEEEEEEEEECCC--CSCTHHHHHHHHTCCCSEEE
T ss_pred ----------------------EeecccccCccccchhhcccccCceeEeccccccce--ecchhhhhcccccCceeEEE
Confidence 333333333333333 3444444444444443 222 112111 3344444
Q ss_pred ecCCCCceecCCCCCCCCCcceEeeccccccccccccccCCCCcceEEecC-ccCccc---c-CCCCCceeEEEecCCcc
Q 035579 573 IQRCGNLVSFPEGGLPCAKLSELRIFQCERLEALPKGLHNLTSLQELTIGG-ALPSLE---E-DGLPTNLHSLDIRGNME 647 (814)
Q Consensus 573 l~~~~~l~~~~~~~~~l~~L~~L~l~~~~~l~~lp~~~~~l~~L~~L~l~~-~~~~l~---~-~~~~~~L~~L~l~~n~~ 647 (814)
+++|. +..++ ....+++|++|++++|.....+|..+..+++|+.|++++ .+..++ . ...+++|++|++++|..
T Consensus 309 l~~n~-l~~~~-~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~l~~L~~L~Ls~N~l 386 (520)
T 2z7x_B 309 VSGTR-MVHML-CPSKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSV 386 (520)
T ss_dssp EESSC-CCCCC-CCSSCCCCCEEECCSSCCCTTTTTTCCCCSSCCEEECCSSCCCBHHHHHHHHTTCTTCCEEECCSSCC
T ss_pred cCCCc-ccccc-chhhCCcccEEEeECCccChhhhhhhccCCCCCEEEccCCccCccccchHHHhhCCCCCEEECCCCcC
Confidence 44442 11111 012344455555554433333444444455555555544 333221 1 23456666666666665
Q ss_pred hhhhhhhcccccCCCCcccEEEEecCCCCCccCCccccccCCCCCCCCCcceEEeccCCCCcccccccccCCCCCeEEec
Q 035579 648 IWKSMIERGRGFHRFSSLRHLTIDGCDDDMVSFPPEDKRLGTALPLPASLTDLEIGRFPNLERLSSSIVDLQNLTELCLR 727 (814)
Q Consensus 648 ~~~~~~~~~~~l~~l~~L~~L~l~~~~~~l~~i~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~l~~L~~L~l~ 727 (814)
....+. ..+..+++|++|++++|. ....+|... +++|+.|++++ +.++.+|.++..+++|++|+++
T Consensus 387 ~~~l~~---~~~~~l~~L~~L~Ls~N~-l~~~~~~~l---------~~~L~~L~Ls~-N~l~~ip~~~~~l~~L~~L~L~ 452 (520)
T 2z7x_B 387 SYDEKK---GDCSWTKSLLSLNMSSNI-LTDTIFRCL---------PPRIKVLDLHS-NKIKSIPKQVVKLEALQELNVA 452 (520)
T ss_dssp BCCGGG---CSCCCCTTCCEEECCSSC-CCGGGGGSC---------CTTCCEEECCS-SCCCCCCGGGGGCTTCCEEECC
T ss_pred Cccccc---chhccCccCCEEECcCCC-CCcchhhhh---------cccCCEEECCC-CcccccchhhhcCCCCCEEECC
Confidence 542221 346667777788887752 123333322 36788888888 5777888777788888888888
Q ss_pred CCCCCCccCCCCC--cCCccEEeecCCc
Q 035579 728 DCPKLKYFPEKGL--PSSLLRLSILSCP 753 (814)
Q Consensus 728 ~c~~l~~lp~~~l--~~~L~~L~i~~c~ 753 (814)
+| +++.+|...+ +++|++|++++||
T Consensus 453 ~N-~l~~l~~~~~~~l~~L~~L~l~~N~ 479 (520)
T 2z7x_B 453 SN-QLKSVPDGIFDRLTSLQKIWLHTNP 479 (520)
T ss_dssp SS-CCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred CC-cCCccCHHHhccCCcccEEECcCCC
Confidence 84 6778877534 6788888888876
No 16
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.97 E-value=9.2e-31 Score=300.73 Aligned_cols=347 Identities=16% Similarity=0.171 Sum_probs=263.8
Q ss_pred cCCccccccccCCCCCcceEeeecCCCCcc------------------cC-CCC--CCCCCcEEEecccCCCCCCchhhh
Q 035579 375 CEGLVKLPQSSLSLCSLREIGIYKCSSLVS------------------FP-EVA--LPSKLEKIHIGACDALKSLPEAWM 433 (814)
Q Consensus 375 ~~~~~~~~~~~~~l~~L~~L~L~~~~~l~~------------------~~-~~~--~~~~L~~L~l~~~~~l~~~~~~~~ 433 (814)
|.+.+ +|..++++++|++|+|++|. ++. +| .++ .+++|++|++++|...+.+|..+
T Consensus 193 n~l~~-ip~~l~~l~~L~~L~Ls~n~-l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~l- 269 (636)
T 4eco_A 193 NNITF-VSKAVMRLTKLRQFYMGNSP-FVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFL- 269 (636)
T ss_dssp CEEEE-ECGGGGGCTTCCEEEEESCC-CCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCSSCCTTT-
T ss_pred CCCcc-CCHHHhcccCCCEEECcCCc-cccccccccccccccchhcccCchhhhhcccCCCCEEEecCCcCCccChHHH-
Confidence 34434 77788888888888888865 444 55 355 68888888888888777777766
Q ss_pred cCCCCCccEEEEecCCCCc--ccccc-c------CcCccceeeeccccCCcccccccCCCC--CCCCCCCCCCccEEeec
Q 035579 434 CDTNSSLEILYIEGCRSLT--YIAAV-Q------LPSSLKNLQIHGCYNIKTLTVEEGIPS--SSSSRYTSSILEHLSIV 502 (814)
Q Consensus 434 ~~~l~~L~~L~l~~~~~l~--~~~~~-~------~~~~L~~L~l~~~~~l~~~~~~~~~~~--~~~~~~~~~~L~~L~l~ 502 (814)
..+++|++|++++|..++ .+|.. . .+++|+.|+++++ .++ .+|. .+.. +++|++|+++
T Consensus 270 -~~l~~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n-~l~------~ip~~~~l~~---l~~L~~L~L~ 338 (636)
T 4eco_A 270 -KALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYN-NLK------TFPVETSLQK---MKKLGMLECL 338 (636)
T ss_dssp -TTCSSCCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSS-CCS------SCCCHHHHTT---CTTCCEEECC
T ss_pred -hcCCCCCEEECcCCCCCccccchHHHHhhhccccCCCCCEEECCCC-cCC------ccCchhhhcc---CCCCCEEeCc
Confidence 778888888888876344 34432 1 1266888888777 333 4454 3333 3678899998
Q ss_pred CCCCcccccccCCCcccccEEEEeccCCcchhhHhhcCCCC-cceEeecccCCcccccccCCCCC--CccEEEecCCCCc
Q 035579 503 GCPSLTCIFSKNELPATLESLSVYKCSKLESIAERLDNNTS-LETIGINFCENLKILPSGLHNLR--QLREITIQRCGNL 579 (814)
Q Consensus 503 ~~~~l~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~-L~~L~L~~n~~~~~~~~~~~~l~--~L~~L~l~~~~~l 579 (814)
++...+. ++.....++|+.|++++|... .+|..+..+++ |++|++++|.+. .+|..+..++ +|++|++++|...
T Consensus 339 ~N~l~g~-ip~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~~L~~L~Ls~N~l~-~lp~~~~~~~l~~L~~L~Ls~N~l~ 415 (636)
T 4eco_A 339 YNQLEGK-LPAFGSEIKLASLNLAYNQIT-EIPANFCGFTEQVENLSFAHNKLK-YIPNIFDAKSVSVMSAIDFSYNEIG 415 (636)
T ss_dssp SCCCEEE-CCCCEEEEEESEEECCSSEEE-ECCTTSEEECTTCCEEECCSSCCS-SCCSCCCTTCSSCEEEEECCSSCTT
T ss_pred CCcCccc-hhhhCCCCCCCEEECCCCccc-cccHhhhhhcccCcEEEccCCcCc-ccchhhhhcccCccCEEECcCCcCC
Confidence 8776545 334555678999999998655 88888999999 999999999988 7787777654 8999999999766
Q ss_pred eecCCCCC-------CCCCcceEeeccccccccccccc-cCCCCcceEEecC-ccCccccCCC--C-------CceeEEE
Q 035579 580 VSFPEGGL-------PCAKLSELRIFQCERLEALPKGL-HNLTSLQELTIGG-ALPSLEEDGL--P-------TNLHSLD 641 (814)
Q Consensus 580 ~~~~~~~~-------~l~~L~~L~l~~~~~l~~lp~~~-~~l~~L~~L~l~~-~~~~l~~~~~--~-------~~L~~L~ 641 (814)
..+|..+. .+++|++|++++| .++.+|..+ ..+++|++|++++ .+..++.... . ++|++|+
T Consensus 416 ~~~p~~l~~~~~~~~~~~~L~~L~Ls~N-~l~~lp~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~~~~~~~~l~~L~~L~ 494 (636)
T 4eco_A 416 SVDGKNFDPLDPTPFKGINVSSINLSNN-QISKFPKELFSTGSPLSSINLMGNMLTEIPKNSLKDENENFKNTYLLTSID 494 (636)
T ss_dssp TTTTCSSCTTCSSCCCCCCEEEEECCSS-CCCSCCTHHHHTTCCCSEEECCSSCCSBCCSSSSEETTEECTTGGGCCEEE
T ss_pred CcchhhhcccccccccCCCCCEEECcCC-ccCcCCHHHHccCCCCCEEECCCCCCCCcCHHHhccccccccccCCccEEE
Confidence 66676666 6789999999999 555777654 5689999999999 7777765322 1 2899999
Q ss_pred ecCCcchhhhhhhcccccC--CCCcccEEEEecCCCCCccCCccccccCCCCCCCCCcceEEecc------CCCCccccc
Q 035579 642 IRGNMEIWKSMIERGRGFH--RFSSLRHLTIDGCDDDMVSFPPEDKRLGTALPLPASLTDLEIGR------FPNLERLSS 713 (814)
Q Consensus 642 l~~n~~~~~~~~~~~~~l~--~l~~L~~L~l~~~~~~l~~i~~~~~~~~~~~~~~~~L~~L~l~~------~~~l~~l~~ 713 (814)
+++|.+... + ..+. .+++|++|++++| .+..+|... ..+++|++|++++ +.-.+.+|.
T Consensus 495 Ls~N~l~~l-p----~~~~~~~l~~L~~L~Ls~N--~l~~ip~~~-------~~l~~L~~L~Ls~N~~ls~N~l~~~~p~ 560 (636)
T 4eco_A 495 LRFNKLTKL-S----DDFRATTLPYLVGIDLSYN--SFSKFPTQP-------LNSSTLKGFGIRNQRDAQGNRTLREWPE 560 (636)
T ss_dssp CCSSCCCBC-C----GGGSTTTCTTCCEEECCSS--CCSSCCCGG-------GGCSSCCEEECCSCBCTTCCBCCCCCCT
T ss_pred CcCCcCCcc-C----hhhhhccCCCcCEEECCCC--CCCCcChhh-------hcCCCCCEEECCCCcccccCcccccChH
Confidence 999988743 2 4454 8999999999997 677788877 4689999999954 334567888
Q ss_pred ccccCCCCCeEEecCCCCCCccCCCCCcCCccEEeecCCchh
Q 035579 714 SIVDLQNLTELCLRDCPKLKYFPEKGLPSSLLRLSILSCPLI 755 (814)
Q Consensus 714 ~~~~l~~L~~L~l~~c~~l~~lp~~~l~~~L~~L~i~~c~~l 755 (814)
++..+++|++|++++| +++.+|.. +.++|++|++++|+..
T Consensus 561 ~l~~l~~L~~L~Ls~N-~l~~ip~~-~~~~L~~L~Ls~N~l~ 600 (636)
T 4eco_A 561 GITLCPSLTQLQIGSN-DIRKVNEK-ITPNISVLDIKDNPNI 600 (636)
T ss_dssp TGGGCSSCCEEECCSS-CCCBCCSC-CCTTCCEEECCSCTTC
T ss_pred HHhcCCCCCEEECCCC-cCCccCHh-HhCcCCEEECcCCCCc
Confidence 9999999999999996 67999975 5589999999999743
No 17
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.97 E-value=3.9e-30 Score=299.70 Aligned_cols=374 Identities=14% Similarity=0.140 Sum_probs=217.4
Q ss_pred cccCCcccEEEEccCCCccc-CCCCCCCcccceeeccccceeEEcCCCceeeecccccCCCCCceeeccCCccccccCCC
Q 035579 221 VEGFPKLRELHIISCSKLQG-TFPEHLPALEMLVIEGSLCKFEIGGCKKVVWRSATDHLGSQNSVVCRDTSNQVFLAGPL 299 (814)
Q Consensus 221 ~~~l~~L~~L~l~~c~~l~~-~lp~~l~~L~~L~l~~~l~~l~l~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 299 (814)
++.+++|++|++++|. +++ .+|..... . +.+.+.|.+
T Consensus 444 l~~L~~L~~L~Ls~N~-Lsg~~i~~~~~~-----~------------------------------------s~n~~~g~i 481 (876)
T 4ecn_A 444 IQRLTKLQIIYFANSP-FTYDNIAVDWED-----A------------------------------------NSDYAKQYE 481 (876)
T ss_dssp GGGCTTCCEEEEESCC-CCGGGBSSSCSC-----T------------------------------------TSHHHHHHT
T ss_pred HhcCCCCCEEECcCCc-CCCCcccccccc-----c------------------------------------ccccccccC
Confidence 7899999999999998 875 22221100 0 001223344
Q ss_pred CCCCC--CcceEEEcCCCCcchhccchhhhhhcCCCCCeEEEecCCCccc--chhhHHHHHHHHhh---hccccccEEEe
Q 035579 300 KPRLP--KLEELKINDMKEQTYMWKSHNELLQDICSLRRLTIRSCPKLQS--LVAEEEKDQQQQLC---ELSCRLEYLIL 372 (814)
Q Consensus 300 ~~~~~--~L~~L~~~~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~--l~~~~~~~~~~~l~---~~~~~L~~L~L 372 (814)
|..+. +++.|+.++++++..... .+..+..+++|+.|++++|..++. +|.. +..+. ..+++|++|++
T Consensus 482 P~~l~f~~L~~L~~L~Ls~N~l~~~-iP~~l~~L~~L~~L~Ls~N~~lsg~~iP~~-----i~~L~~~~~~l~~L~~L~L 555 (876)
T 4ecn_A 482 NEELSWSNLKDLTDVELYNCPNMTQ-LPDFLYDLPELQSLNIACNRGISAAQLKAD-----WTRLADDEDTGPKIQIFYM 555 (876)
T ss_dssp TSCCCGGGCTTCCEEEEESCTTCCS-CCGGGGGCSSCCEEECTTCTTSCHHHHHHH-----HHHHHHCTTTTTTCCEEEC
T ss_pred ChhhhhccCCCCCEEECcCCCCCcc-ChHHHhCCCCCCEEECcCCCCcccccchHH-----HHhhhhcccccCCccEEEe
Confidence 55554 555566666655554333 335568889999999998753553 4432 33331 11258999999
Q ss_pred eccCCcccccc--ccCCCCCcceEeeecCCCCcccCCCCCCCCCcEEEecccCCCCCCchhhhcCCCCC-ccEEEEecCC
Q 035579 373 SCCEGLVKLPQ--SSLSLCSLREIGIYKCSSLVSFPEVALPSKLEKIHIGACDALKSLPEAWMCDTNSS-LEILYIEGCR 449 (814)
Q Consensus 373 ~~~~~~~~~~~--~~~~l~~L~~L~L~~~~~l~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~-L~~L~l~~~~ 449 (814)
++|.+. .+|. .+..+++|++|++++|. ++.+|.+..+++|+.|++++|. +..+|..+ ..+++ |++|++++|.
T Consensus 556 s~N~L~-~ip~~~~l~~L~~L~~L~Ls~N~-l~~lp~~~~L~~L~~L~Ls~N~-l~~lp~~l--~~l~~~L~~L~Ls~N~ 630 (876)
T 4ecn_A 556 GYNNLE-EFPASASLQKMVKLGLLDCVHNK-VRHLEAFGTNVKLTDLKLDYNQ-IEEIPEDF--CAFTDQVEGLGFSHNK 630 (876)
T ss_dssp CSSCCC-BCCCHHHHTTCTTCCEEECTTSC-CCBCCCCCTTSEESEEECCSSC-CSCCCTTS--CEECTTCCEEECCSSC
T ss_pred eCCcCC-ccCChhhhhcCCCCCEEECCCCC-cccchhhcCCCcceEEECcCCc-cccchHHH--hhccccCCEEECcCCC
Confidence 999876 8888 88999999999999865 4588877788999999999998 55888776 77888 9999999865
Q ss_pred CCccccccc-Cc--CccceeeeccccCCcccccccCCCCCCCCCCCCCCccEEeecCCCCcccccccCCCcccccEEEEe
Q 035579 450 SLTYIAAVQ-LP--SSLKNLQIHGCYNIKTLTVEEGIPSSSSSRYTSSILEHLSIVGCPSLTCIFSKNELPATLESLSVY 526 (814)
Q Consensus 450 ~l~~~~~~~-~~--~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~l~ 526 (814)
++.+|... .. ++|+.|+++++..-. .+|...... .....++|+.|+++
T Consensus 631 -L~~lp~~~~~~~~~~L~~L~Ls~N~l~g------~ip~l~~~l----------------------~~~~~~~L~~L~Ls 681 (876)
T 4ecn_A 631 -LKYIPNIFNAKSVYVMGSVDFSYNKIGS------EGRNISCSM----------------------DDYKGINASTVTLS 681 (876)
T ss_dssp -CCSCCSCCCTTCSSCEEEEECCSSCTTT------TSSSCSSCT----------------------TTCCCCCEEEEECC
T ss_pred -CCcCchhhhccccCCCCEEECcCCcCCC------ccccchhhh----------------------ccccCCCcCEEEcc
Confidence 44444221 11 124444444432111 111100000 00011256666776
Q ss_pred ccCCcchhhHh-hcCCCCcceEeecccCCcccccccCCC--------CCCccEEEecCCCCceecCCCCC--CCCCcceE
Q 035579 527 KCSKLESIAER-LDNNTSLETIGINFCENLKILPSGLHN--------LRQLREITIQRCGNLVSFPEGGL--PCAKLSEL 595 (814)
Q Consensus 527 ~~~~~~~~~~~-~~~l~~L~~L~L~~n~~~~~~~~~~~~--------l~~L~~L~l~~~~~l~~~~~~~~--~l~~L~~L 595 (814)
+|... .+|.. +..+++|+.|++++|.+. .+|..+.. +++|++|++++| .+..+|..+. .+++|+.|
T Consensus 682 ~N~L~-~lp~~~~~~l~~L~~L~Ls~N~L~-~ip~~~~~~~~~~l~nl~~L~~L~Ls~N-~L~~lp~~l~~~~l~~L~~L 758 (876)
T 4ecn_A 682 YNEIQ-KFPTELFATGSPISTIILSNNLMT-SIPENSLKPKDGNYKNTYLLTTIDLRFN-KLTSLSDDFRATTLPYLSNM 758 (876)
T ss_dssp SSCCC-SCCHHHHHTTCCCSEEECCSCCCS-CCCTTSSSCTTSCCTTGGGCCEEECCSS-CCCCCCGGGSTTTCTTCCEE
T ss_pred CCcCC-ccCHHHHccCCCCCEEECCCCcCC-ccChHHhccccccccccCCccEEECCCC-CCccchHHhhhccCCCcCEE
Confidence 66555 34433 346677777777777666 33333222 236666666666 4446665554 56666666
Q ss_pred eeccccccccccccccCCCCcceEEecCccCccccCCCCCceeEEEecCCcchhhhhhhcccccCCCCcccEEEEecCCC
Q 035579 596 RIFQCERLEALPKGLHNLTSLQELTIGGALPSLEEDGLPTNLHSLDIRGNMEIWKSMIERGRGFHRFSSLRHLTIDGCDD 675 (814)
Q Consensus 596 ~l~~~~~l~~lp~~~~~l~~L~~L~l~~~~~~l~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~ 675 (814)
++++| .+..+|..+..+++|+.|+++++- ++++|......+ ..+..+++|+.|++++|
T Consensus 759 ~Ls~N-~L~~lp~~l~~L~~L~~L~Ls~N~---------------~ls~N~l~~~ip----~~l~~L~~L~~L~Ls~N-- 816 (876)
T 4ecn_A 759 DVSYN-CFSSFPTQPLNSSQLKAFGIRHQR---------------DAEGNRILRQWP----TGITTCPSLIQLQIGSN-- 816 (876)
T ss_dssp ECCSS-CCSSCCCGGGGCTTCCEEECCCCB---------------CTTCCBCCCCCC----TTGGGCSSCCEEECCSS--
T ss_pred EeCCC-CCCccchhhhcCCCCCEEECCCCC---------------CcccccccccCh----HHHhcCCCCCEEECCCC--
Confidence 66666 333356555555555555544310 222333333322 44566666666666665
Q ss_pred CCccCCccccccCCCCCCCCCcceEEeccCCCCccc
Q 035579 676 DMVSFPPEDKRLGTALPLPASLTDLEIGRFPNLERL 711 (814)
Q Consensus 676 ~l~~i~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l 711 (814)
.+..+|... .++|+.|+|++ |.+..+
T Consensus 817 ~L~~Ip~~l---------~~~L~~LdLs~-N~l~~i 842 (876)
T 4ecn_A 817 DIRKVDEKL---------TPQLYILDIAD-NPNISI 842 (876)
T ss_dssp CCCBCCSCC---------CSSSCEEECCS-CTTCEE
T ss_pred CCCccCHhh---------cCCCCEEECCC-CCCCcc
Confidence 446666543 25666666666 334443
No 18
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.97 E-value=2.2e-31 Score=305.87 Aligned_cols=359 Identities=16% Similarity=0.171 Sum_probs=240.6
Q ss_pred ccccEEEeeccCCccc-----------------cccccC--CCCCcceEeeecCCCCcccC-CCCCCCCCcEEEecccC-
Q 035579 365 CRLEYLILSCCEGLVK-----------------LPQSSL--SLCSLREIGIYKCSSLVSFP-EVALPSKLEKIHIGACD- 423 (814)
Q Consensus 365 ~~L~~L~L~~~~~~~~-----------------~~~~~~--~l~~L~~L~L~~~~~l~~~~-~~~~~~~L~~L~l~~~~- 423 (814)
++|++|++++|.+.+. +|..++ ++++|++|++++|.....+| .+..+++|++|++++|.
T Consensus 206 ~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~~ 285 (636)
T 4eco_A 206 TKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRG 285 (636)
T ss_dssp TTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCSSCCTTTTTCSSCCEEECTTCTT
T ss_pred cCCCEEECcCCccccccccccccccccchhcccCchhhhhcccCCCCEEEecCCcCCccChHHHhcCCCCCEEECcCCCC
Confidence 6666666666665543 666666 66666666666665555555 24456666666666665
Q ss_pred CCC-CCchhhhcCCC------CCccEEEEecCCCCccccc---ccCcCccceeeeccccCCcccccccCCCCCCCCCCCC
Q 035579 424 ALK-SLPEAWMCDTN------SSLEILYIEGCRSLTYIAA---VQLPSSLKNLQIHGCYNIKTLTVEEGIPSSSSSRYTS 493 (814)
Q Consensus 424 ~l~-~~~~~~~~~~l------~~L~~L~l~~~~~l~~~~~---~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~ 493 (814)
..+ .+|..+ +.+ ++|++|++++|. ++.+|. ...+++|+.|+++++..-. .+| .+ ..+
T Consensus 286 l~~~~lp~~~--~~L~~~~~l~~L~~L~L~~n~-l~~ip~~~~l~~l~~L~~L~L~~N~l~g------~ip-~~---~~l 352 (636)
T 4eco_A 286 ISGEQLKDDW--QALADAPVGEKIQIIYIGYNN-LKTFPVETSLQKMKKLGMLECLYNQLEG------KLP-AF---GSE 352 (636)
T ss_dssp SCHHHHHHHH--HHHHHSGGGGTCCEEECCSSC-CSSCCCHHHHTTCTTCCEEECCSCCCEE------ECC-CC---EEE
T ss_pred CccccchHHH--HhhhccccCCCCCEEECCCCc-CCccCchhhhccCCCCCEEeCcCCcCcc------chh-hh---CCC
Confidence 332 355544 332 666666666643 335554 2444556666666553221 233 11 123
Q ss_pred CCccEEeecCCCCcccccccCCCccc-ccEEEEeccCCcchhhHhhcCCC--CcceEeecccCCcccccccCC-------
Q 035579 494 SILEHLSIVGCPSLTCIFSKNELPAT-LESLSVYKCSKLESIAERLDNNT--SLETIGINFCENLKILPSGLH------- 563 (814)
Q Consensus 494 ~~L~~L~l~~~~~l~~~~~~~~~~~~-L~~L~l~~~~~~~~~~~~~~~l~--~L~~L~L~~n~~~~~~~~~~~------- 563 (814)
++|++|+++++... .+.......++ |++|++++|... .+|..+..+. +|+.|++++|.+.+..|..+.
T Consensus 353 ~~L~~L~L~~N~l~-~lp~~l~~l~~~L~~L~Ls~N~l~-~lp~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~~~~~~~ 430 (636)
T 4eco_A 353 IKLASLNLAYNQIT-EIPANFCGFTEQVENLSFAHNKLK-YIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPF 430 (636)
T ss_dssp EEESEEECCSSEEE-ECCTTSEEECTTCCEEECCSSCCS-SCCSCCCTTCSSCEEEEECCSSCTTTTTTCSSCTTCSSCC
T ss_pred CCCCEEECCCCccc-cccHhhhhhcccCcEEEccCCcCc-ccchhhhhcccCccCEEECcCCcCCCcchhhhcccccccc
Confidence 46777777665432 32222333456 888888887755 7777776655 899999999999888888777
Q ss_pred CCCCccEEEecCCCCceecCCCC-CCCCCcceEeeccccccccccccccC--------CCCcceEEecC-ccCcccc-CC
Q 035579 564 NLRQLREITIQRCGNLVSFPEGG-LPCAKLSELRIFQCERLEALPKGLHN--------LTSLQELTIGG-ALPSLEE-DG 632 (814)
Q Consensus 564 ~l~~L~~L~l~~~~~l~~~~~~~-~~l~~L~~L~l~~~~~l~~lp~~~~~--------l~~L~~L~l~~-~~~~l~~-~~ 632 (814)
.+++|++|++++| .+..+|..+ ..+++|++|++++| .++.+|..... +++|+.|++++ .+..++. ..
T Consensus 431 ~~~~L~~L~Ls~N-~l~~lp~~~~~~l~~L~~L~Ls~N-~l~~i~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~~~ 508 (636)
T 4eco_A 431 KGINVSSINLSNN-QISKFPKELFSTGSPLSSINLMGN-MLTEIPKNSLKDENENFKNTYLLTSIDLRFNKLTKLSDDFR 508 (636)
T ss_dssp CCCCEEEEECCSS-CCCSCCTHHHHTTCCCSEEECCSS-CCSBCCSSSSEETTEECTTGGGCCEEECCSSCCCBCCGGGS
T ss_pred cCCCCCEEECcCC-ccCcCCHHHHccCCCCCEEECCCC-CCCCcCHHHhccccccccccCCccEEECcCCcCCccChhhh
Confidence 7789999999988 555777654 35788999999988 45577764432 23899999998 7777765 22
Q ss_pred --CCCceeEEEecCCcchhhhhhhcccccCCCCcccEEEEecC-----CCCCccCCccccccCCCCCCCCCcceEEeccC
Q 035579 633 --LPTNLHSLDIRGNMEIWKSMIERGRGFHRFSSLRHLTIDGC-----DDDMVSFPPEDKRLGTALPLPASLTDLEIGRF 705 (814)
Q Consensus 633 --~~~~L~~L~l~~n~~~~~~~~~~~~~l~~l~~L~~L~l~~~-----~~~l~~i~~~~~~~~~~~~~~~~L~~L~l~~~ 705 (814)
.+++|++|++++|.+.. .+ ..+..+++|++|++++| +.....+|... ..+++|++|++++
T Consensus 509 ~~~l~~L~~L~Ls~N~l~~-ip----~~~~~l~~L~~L~Ls~N~~ls~N~l~~~~p~~l-------~~l~~L~~L~Ls~- 575 (636)
T 4eco_A 509 ATTLPYLVGIDLSYNSFSK-FP----TQPLNSSTLKGFGIRNQRDAQGNRTLREWPEGI-------TLCPSLTQLQIGS- 575 (636)
T ss_dssp TTTCTTCCEEECCSSCCSS-CC----CGGGGCSSCCEEECCSCBCTTCCBCCCCCCTTG-------GGCSSCCEEECCS-
T ss_pred hccCCCcCEEECCCCCCCC-cC----hhhhcCCCCCEEECCCCcccccCcccccChHHH-------hcCCCCCEEECCC-
Confidence 67899999999998776 22 56778999999999653 22356677766 4689999999999
Q ss_pred CCCcccccccccCCCCCeEEecCCCCCCccCCCCCc----------CCccEEeecCCchhh
Q 035579 706 PNLERLSSSIVDLQNLTELCLRDCPKLKYFPEKGLP----------SSLLRLSILSCPLIE 756 (814)
Q Consensus 706 ~~l~~l~~~~~~l~~L~~L~l~~c~~l~~lp~~~l~----------~~L~~L~i~~c~~l~ 756 (814)
|.++.+|..+. ++|+.|++++| .+..++...+. ...+..++.+||.++
T Consensus 576 N~l~~ip~~~~--~~L~~L~Ls~N-~l~~~~~~~~~~~~~~~~~~l~~~~~~~i~~C~~L~ 633 (636)
T 4eco_A 576 NDIRKVNEKIT--PNISVLDIKDN-PNISIDLSYVCPYIEAGMYMLFYDKTQDIRGCDALD 633 (636)
T ss_dssp SCCCBCCSCCC--TTCCEEECCSC-TTCEEECTTTHHHHHTTCCEEECCTTSEEESCGGGC
T ss_pred CcCCccCHhHh--CcCCEEECcCC-CCccccHHhcchhhhcccceeecCCccccCCCcccc
Confidence 67799998655 89999999996 56776654431 223455788999765
No 19
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.97 E-value=3e-30 Score=291.21 Aligned_cols=431 Identities=15% Similarity=0.067 Sum_probs=261.2
Q ss_pred CCcceeEEEEecCCCCCCCcchhhHHhhhcCCCCCcCcccEEEeeeCCCCC-CccccCCCCCcccEEEEecCCCCCCCCC
Q 035579 83 ENLRELLLQWTRSTDGSSSWKAETEMGVLDMLKPHKNLEQFGICGYGGTKF-PTWLGDCSFSNLVTLKFKDCGVCTTLPS 161 (814)
Q Consensus 83 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~-p~~~~~~~l~~L~~L~L~~~~~~~~l~~ 161 (814)
++|++|++++|..... ..+.+..+++|++|++++|.+..+ |+.+. .+++|++|++++|.+. .+|.
T Consensus 21 ~~L~~L~Ls~n~i~~~-----------~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~--~l~~L~~L~Ls~N~l~-~lp~ 86 (520)
T 2z7x_B 21 QKTTILNISQNYISEL-----------WTSDILSLSKLRILIISHNRIQYLDISVFK--FNQELEYLDLSHNKLV-KISC 86 (520)
T ss_dssp TTCSEEECCSSCCCCC-----------CHHHHTTCTTCCEEECCSSCCCEEEGGGGT--TCTTCCEEECCSSCCC-EEEC
T ss_pred ccccEEECCCCccccc-----------ChhhccccccccEEecCCCccCCcChHHhh--cccCCCEEecCCCcee-ecCc
Confidence 6778888876665432 124566677788888887776655 45555 6778888888887643 5555
Q ss_pred CCCCCccceeeecCCcCcee--eCccccCCCCCCCCCCcceeeccccccccccccCCCCCCcccCCcc--cEEEEccCCC
Q 035579 162 VGQLSSLKHLTVRGMSRVKS--LGSEFYGNDSPIPFPCLETLRFENMQEWEDWIPLRSDQGVEGFPKL--RELHIISCSK 237 (814)
Q Consensus 162 l~~l~~L~~L~l~~~~~~~~--~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~l~~L--~~L~l~~c~~ 237 (814)
. .+++|++|++++|. ++. ++..+.. +++|++|++++ +.++... +..+++| ++|++++|.
T Consensus 87 ~-~l~~L~~L~L~~N~-l~~~~~p~~~~~------l~~L~~L~L~~-n~l~~~~-------~~~l~~L~L~~L~l~~n~- 149 (520)
T 2z7x_B 87 H-PTVNLKHLDLSFNA-FDALPICKEFGN------MSQLKFLGLST-THLEKSS-------VLPIAHLNISKVLLVLGE- 149 (520)
T ss_dssp C-CCCCCSEEECCSSC-CSSCCCCGGGGG------CTTCCEEEEEE-SSCCGGG-------GGGGTTSCEEEEEEEECT-
T ss_pred c-ccCCccEEeccCCc-cccccchhhhcc------CCcceEEEecC-cccchhh-------ccccccceeeEEEeeccc-
Confidence 5 77788888887753 333 2223322 77788888777 3344311 4456666 888888776
Q ss_pred c--ccCCCCCCCcccceeeccccceeEEcCCCceeeecccccCCCCCceeeccCCccccccCC-CCCCCCCcceEEEcCC
Q 035579 238 L--QGTFPEHLPALEMLVIEGSLCKFEIGGCKKVVWRSATDHLGSQNSVVCRDTSNQVFLAGP-LKPRLPKLEELKINDM 314 (814)
Q Consensus 238 l--~~~lp~~l~~L~~L~l~~~l~~l~l~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~L~~L~~~~l 314 (814)
+ .+..|..++.++. .. ..+++.++. +.+. .+..+.++..|+.+++
T Consensus 150 l~~~~~~~~~l~~l~~-~~----l~l~l~~n~---------------------------~~~~~~~~~~~~l~~L~~L~l 197 (520)
T 2z7x_B 150 TYGEKEDPEGLQDFNT-ES----LHIVFPTNK---------------------------EFHFILDVSVKTVANLELSNI 197 (520)
T ss_dssp TTTSSCCTTTTTTCCE-EE----EEEECCSSS---------------------------CCCCCCCCCCTTCSEEEECCE
T ss_pred cccccccccccccccc-ce----EEEEeccCc---------------------------chhhhhhhhhhcccceeeccc
Confidence 5 4456666665542 10 012222222 1122 2335677888888888
Q ss_pred CCcc-------hhccchhhhhhcCCCCCeEEEecCCCcccchhhHHHHHHHHhhhccccccEEEeeccCCcccccccc--
Q 035579 315 KEQT-------YMWKSHNELLQDICSLRRLTIRSCPKLQSLVAEEEKDQQQQLCELSCRLEYLILSCCEGLVKLPQSS-- 385 (814)
Q Consensus 315 ~~~~-------~~~~~~~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~~~~-- 385 (814)
+.+. ... .. ..+..+++|+.|+++++. +............ ..++|++|++++|.+.+.+|..+
T Consensus 198 ~~n~~~~~~~~~~~-~~-~~l~~l~~L~~L~l~~~~-l~~~~~~~~~~~~-----~~~~L~~L~l~~n~l~~~~p~~~~~ 269 (520)
T 2z7x_B 198 KCVLEDNKCSYFLS-IL-AKLQTNPKLSNLTLNNIE-TTWNSFIRILQLV-----WHTTVWYFSISNVKLQGQLDFRDFD 269 (520)
T ss_dssp EECCSTTTTHHHHH-HH-HGGGGCTTCCEEEEEEEE-EEHHHHHHHHHHH-----HTSSCSEEEEEEEEEESCCCCCCCC
T ss_pred cccccccccceeec-ch-hhhccccchhhccccccc-cCHHHHHHHHHHh-----hhCcccEEEeecccccCccccchhh
Confidence 7764 211 12 245778888888888753 3322111111110 12578888888887766777766
Q ss_pred ---CCCCCcceEeeecCCCCcccCC--CCC---CCCCcEEEecccCCCCCCchhhhcCCCCCccEEEEecCCCCcccccc
Q 035579 386 ---LSLCSLREIGIYKCSSLVSFPE--VAL---PSKLEKIHIGACDALKSLPEAWMCDTNSSLEILYIEGCRSLTYIAAV 457 (814)
Q Consensus 386 ---~~l~~L~~L~L~~~~~l~~~~~--~~~---~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~ 457 (814)
..+++|+.+++++|.. .+|. +.. -.+|+.|++++|. +...+.. ..+++|++|++++|. ++.
T Consensus 270 ~~~~~l~~L~~l~l~~n~~--~~p~~~~~~~~~~~~L~~L~l~~n~-l~~~~~~---~~l~~L~~L~Ls~n~-l~~---- 338 (520)
T 2z7x_B 270 YSGTSLKALSIHQVVSDVF--GFPQSYIYEIFSNMNIKNFTVSGTR-MVHMLCP---SKISPFLHLDFSNNL-LTD---- 338 (520)
T ss_dssp CCSCCCCEEEEEEEEECCC--CSCTHHHHHHHHTCCCSEEEEESSC-CCCCCCC---SSCCCCCEEECCSSC-CCT----
T ss_pred cccccCceeEeccccccce--ecchhhhhcccccCceeEEEcCCCc-cccccch---hhCCcccEEEeECCc-cCh----
Confidence 6677777777766533 3331 111 1346666666655 3222211 334555555555543 110
Q ss_pred cCcCccceeeeccccCCcccccccCCCCCCCCCCCCCCccEEeecCCCCcccccccCCCcccccEEEEeccCCcc--hhh
Q 035579 458 QLPSSLKNLQIHGCYNIKTLTVEEGIPSSSSSRYTSSILEHLSIVGCPSLTCIFSKNELPATLESLSVYKCSKLE--SIA 535 (814)
Q Consensus 458 ~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~l~~~~~~~--~~~ 535 (814)
..|. ....+++|++|++++|...+ .+|
T Consensus 339 ------------------------~~~~---------------------------~~~~l~~L~~L~L~~N~l~~l~~~~ 367 (520)
T 2z7x_B 339 ------------------------TVFE---------------------------NCGHLTELETLILQMNQLKELSKIA 367 (520)
T ss_dssp ------------------------TTTT---------------------------TCCCCSSCCEEECCSSCCCBHHHHH
T ss_pred ------------------------hhhh---------------------------hhccCCCCCEEEccCCccCccccch
Confidence 1111 11223467777777776655 567
Q ss_pred HhhcCCCCcceEeecccCCcccccc-cCCCCCCccEEEecCCCCceecCCCCCCCCCcceEeeccccccccccccccCCC
Q 035579 536 ERLDNNTSLETIGINFCENLKILPS-GLHNLRQLREITIQRCGNLVSFPEGGLPCAKLSELRIFQCERLEALPKGLHNLT 614 (814)
Q Consensus 536 ~~~~~l~~L~~L~L~~n~~~~~~~~-~~~~l~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~~~~l~~lp~~~~~l~ 614 (814)
..++.+++|++|++++|.+.+.+|. .+..+++|++|++++|.....+|..+. ++|++|++++| .++.+|..+..++
T Consensus 368 ~~~~~l~~L~~L~Ls~N~l~~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~--~~L~~L~Ls~N-~l~~ip~~~~~l~ 444 (520)
T 2z7x_B 368 EMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKSLLSLNMSSNILTDTIFRCLP--PRIKVLDLHSN-KIKSIPKQVVKLE 444 (520)
T ss_dssp HHHTTCTTCCEEECCSSCCBCCGGGCSCCCCTTCCEEECCSSCCCGGGGGSCC--TTCCEEECCSS-CCCCCCGGGGGCT
T ss_pred HHHhhCCCCCEEECCCCcCCcccccchhccCccCCEEECcCCCCCcchhhhhc--ccCCEEECCCC-cccccchhhhcCC
Confidence 7888899999999999988875554 477888999999998865555555443 58999999988 5668888777888
Q ss_pred CcceEEecC-ccCcccc--CCCCCceeEEEecCCcchh
Q 035579 615 SLQELTIGG-ALPSLEE--DGLPTNLHSLDIRGNMEIW 649 (814)
Q Consensus 615 ~L~~L~l~~-~~~~l~~--~~~~~~L~~L~l~~n~~~~ 649 (814)
+|++|++++ .+..++. ...+++|++|++++|+...
T Consensus 445 ~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~l~~N~~~c 482 (520)
T 2z7x_B 445 ALQELNVASNQLKSVPDGIFDRLTSLQKIWLHTNPWDC 482 (520)
T ss_dssp TCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCBCC
T ss_pred CCCEEECCCCcCCccCHHHhccCCcccEEECcCCCCcc
Confidence 888888877 6666654 3345667777777766543
No 20
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.97 E-value=5.3e-30 Score=298.54 Aligned_cols=341 Identities=16% Similarity=0.149 Sum_probs=245.3
Q ss_pred cccccCCCCCcceEeeecCCCCc-----------------ccCC-CC--CCCCCcEEEecccCCCCCCchhhhcCCCCCc
Q 035579 381 LPQSSLSLCSLREIGIYKCSSLV-----------------SFPE-VA--LPSKLEKIHIGACDALKSLPEAWMCDTNSSL 440 (814)
Q Consensus 381 ~~~~~~~l~~L~~L~L~~~~~l~-----------------~~~~-~~--~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L 440 (814)
+|..+.++++|++|+|++|.... .+|. ++ .+++|++|++++|...+.+|..+ ..+++|
T Consensus 440 IP~~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l--~~L~~L 517 (876)
T 4ecn_A 440 ISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFL--YDLPEL 517 (876)
T ss_dssp ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESCTTCCSCCGGG--GGCSSC
T ss_pred hhHHHhcCCCCCEEECcCCcCCCCcccccccccccccccccCChhhhhccCCCCCEEECcCCCCCccChHHH--hCCCCC
Confidence 66667777777777777754333 1443 33 56777777777776666666655 667777
Q ss_pred cEEEEecCCCCcc--cccc--------cCcCccceeeeccccCCcccccccCCCC--CCCCCCCCCCccEEeecCCCCcc
Q 035579 441 EILYIEGCRSLTY--IAAV--------QLPSSLKNLQIHGCYNIKTLTVEEGIPS--SSSSRYTSSILEHLSIVGCPSLT 508 (814)
Q Consensus 441 ~~L~l~~~~~l~~--~~~~--------~~~~~L~~L~l~~~~~l~~~~~~~~~~~--~~~~~~~~~~L~~L~l~~~~~l~ 508 (814)
++|++++|..++. +|.. ...++|+.|+++++. +. .+|. .+.. +++|+.|+++++...
T Consensus 518 ~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~-L~------~ip~~~~l~~---L~~L~~L~Ls~N~l~- 586 (876)
T 4ecn_A 518 QSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNN-LE------EFPASASLQK---MVKLGLLDCVHNKVR- 586 (876)
T ss_dssp CEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSC-CC------BCCCHHHHTT---CTTCCEEECTTSCCC-
T ss_pred CEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCc-CC------ccCChhhhhc---CCCCCEEECCCCCcc-
Confidence 7777777653332 3321 122457777776662 22 3443 2322 356888888776644
Q ss_pred cccccCCCcccccEEEEeccCCcchhhHhhcCCCC-cceEeecccCCcccccccCCCCCC--ccEEEecCCCCceecCC-
Q 035579 509 CIFSKNELPATLESLSVYKCSKLESIAERLDNNTS-LETIGINFCENLKILPSGLHNLRQ--LREITIQRCGNLVSFPE- 584 (814)
Q Consensus 509 ~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~-L~~L~L~~n~~~~~~~~~~~~l~~--L~~L~l~~~~~l~~~~~- 584 (814)
. ++....+++|+.|++++|... .+|..+..+++ |+.|++++|.+. .+|..+..++. |+.|++++|.....+|.
T Consensus 587 ~-lp~~~~L~~L~~L~Ls~N~l~-~lp~~l~~l~~~L~~L~Ls~N~L~-~lp~~~~~~~~~~L~~L~Ls~N~l~g~ip~l 663 (876)
T 4ecn_A 587 H-LEAFGTNVKLTDLKLDYNQIE-EIPEDFCAFTDQVEGLGFSHNKLK-YIPNIFNAKSVYVMGSVDFSYNKIGSEGRNI 663 (876)
T ss_dssp B-CCCCCTTSEESEEECCSSCCS-CCCTTSCEECTTCCEEECCSSCCC-SCCSCCCTTCSSCEEEEECCSSCTTTTSSSC
T ss_pred c-chhhcCCCcceEEECcCCccc-cchHHHhhccccCCEEECcCCCCC-cCchhhhccccCCCCEEECcCCcCCCccccc
Confidence 3 445556678999999998766 88888999999 999999999987 67777776654 99999999865444342
Q ss_pred --CCC--CCCCcceEeeccccccccccccc-cCCCCcceEEecC-ccCccccCCC---------CCceeEEEecCCcchh
Q 035579 585 --GGL--PCAKLSELRIFQCERLEALPKGL-HNLTSLQELTIGG-ALPSLEEDGL---------PTNLHSLDIRGNMEIW 649 (814)
Q Consensus 585 --~~~--~l~~L~~L~l~~~~~l~~lp~~~-~~l~~L~~L~l~~-~~~~l~~~~~---------~~~L~~L~l~~n~~~~ 649 (814)
... .+++|+.|++++| .+..+|..+ ..+++|+.|++++ .+..++...+ +++|++|++++|.+..
T Consensus 664 ~~~l~~~~~~~L~~L~Ls~N-~L~~lp~~~~~~l~~L~~L~Ls~N~L~~ip~~~~~~~~~~l~nl~~L~~L~Ls~N~L~~ 742 (876)
T 4ecn_A 664 SCSMDDYKGINASTVTLSYN-EIQKFPTELFATGSPISTIILSNNLMTSIPENSLKPKDGNYKNTYLLTTIDLRFNKLTS 742 (876)
T ss_dssp SSCTTTCCCCCEEEEECCSS-CCCSCCHHHHHTTCCCSEEECCSCCCSCCCTTSSSCTTSCCTTGGGCCEEECCSSCCCC
T ss_pred hhhhccccCCCcCEEEccCC-cCCccCHHHHccCCCCCEEECCCCcCCccChHHhccccccccccCCccEEECCCCCCcc
Confidence 222 3458999999999 556787765 4889999999998 7777765322 1289999999998773
Q ss_pred hhhhhcccccC--CCCcccEEEEecCCCCCccCCccccccCCCCCCCCCcceEEecc------CCCCcccccccccCCCC
Q 035579 650 KSMIERGRGFH--RFSSLRHLTIDGCDDDMVSFPPEDKRLGTALPLPASLTDLEIGR------FPNLERLSSSIVDLQNL 721 (814)
Q Consensus 650 ~~~~~~~~~l~--~l~~L~~L~l~~~~~~l~~i~~~~~~~~~~~~~~~~L~~L~l~~------~~~l~~l~~~~~~l~~L 721 (814)
. + ..+. .+++|+.|++++| .+..+|... ..+++|+.|++++ |.....+|..+..+++|
T Consensus 743 l-p----~~l~~~~l~~L~~L~Ls~N--~L~~lp~~l-------~~L~~L~~L~Ls~N~~ls~N~l~~~ip~~l~~L~~L 808 (876)
T 4ecn_A 743 L-S----DDFRATTLPYLSNMDVSYN--CFSSFPTQP-------LNSSQLKAFGIRHQRDAEGNRILRQWPTGITTCPSL 808 (876)
T ss_dssp C-C----GGGSTTTCTTCCEEECCSS--CCSSCCCGG-------GGCTTCCEEECCCCBCTTCCBCCCCCCTTGGGCSSC
T ss_pred c-h----HHhhhccCCCcCEEEeCCC--CCCccchhh-------hcCCCCCEEECCCCCCcccccccccChHHHhcCCCC
Confidence 3 2 4455 8999999999998 677788877 4689999999987 34456788899999999
Q ss_pred CeEEecCCCCCCccCCCCCcCCccEEeecCCch
Q 035579 722 TELCLRDCPKLKYFPEKGLPSSLLRLSILSCPL 754 (814)
Q Consensus 722 ~~L~l~~c~~l~~lp~~~l~~~L~~L~i~~c~~ 754 (814)
+.|++++| .++.+|.. +.++|+.|++++|+.
T Consensus 809 ~~L~Ls~N-~L~~Ip~~-l~~~L~~LdLs~N~l 839 (876)
T 4ecn_A 809 IQLQIGSN-DIRKVDEK-LTPQLYILDIADNPN 839 (876)
T ss_dssp CEEECCSS-CCCBCCSC-CCSSSCEEECCSCTT
T ss_pred CEEECCCC-CCCccCHh-hcCCCCEEECCCCCC
Confidence 99999996 67999985 568999999999974
No 21
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.97 E-value=5.4e-28 Score=280.48 Aligned_cols=517 Identities=15% Similarity=0.104 Sum_probs=307.4
Q ss_pred eeCCCCCCccccCCCCCcccEEEEecCCCCCCCC-CCCCCCccceeeecCCcCceeeCccccCCCCCCCCCCcceeeccc
Q 035579 127 GYGGTKFPTWLGDCSFSNLVTLKFKDCGVCTTLP-SVGQLSSLKHLTVRGMSRVKSLGSEFYGNDSPIPFPCLETLRFEN 205 (814)
Q Consensus 127 ~~~~~~~p~~~~~~~l~~L~~L~L~~~~~~~~l~-~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~ 205 (814)
+-..+.+|..+. +++++|+|++|.+....+ ++.++++|++|+|++| .++.++...++ .+++|++|++++
T Consensus 40 ~~~l~~vP~~lp----~~~~~LdLs~N~i~~l~~~~f~~l~~L~~L~Ls~N-~i~~i~~~~f~-----~L~~L~~L~Ls~ 109 (635)
T 4g8a_A 40 ELNFYKIPDNLP----FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRC-EIQTIEDGAYQ-----SLSHLSTLILTG 109 (635)
T ss_dssp TSCCSSCCSSSC----TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTC-CCCEECTTTTT-----TCTTCCEEECTT
T ss_pred CCCcCccCCCCC----cCCCEEEeeCCCCCCCCHHHHhCCCCCCEEECCCC-cCCCcChhHhc-----CCCCCCEEEccC
Confidence 334566776543 467888888877443333 4778888888888875 46666544322 277777777777
Q ss_pred cccccccccCCCCCCcccCCcccEEEEccCCCcccCCCCCCCcccceeeccccceeEEcCCCceeeecccccCCCCCcee
Q 035579 206 MQEWEDWIPLRSDQGVEGFPKLRELHIISCSKLQGTFPEHLPALEMLVIEGSLCKFEIGGCKKVVWRSATDHLGSQNSVV 285 (814)
Q Consensus 206 ~~~l~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~lp~~l~~L~~L~l~~~l~~l~l~~c~~~~~~~~~~~~~~~~~~~ 285 (814)
++++.+.... +..+++|++|++++|. ++ .+|.
T Consensus 110 -N~l~~l~~~~----f~~L~~L~~L~Ls~N~-l~-~l~~----------------------------------------- 141 (635)
T 4g8a_A 110 -NPIQSLALGA----FSGLSSLQKLVAVETN-LA-SLEN----------------------------------------- 141 (635)
T ss_dssp -CCCCEECGGG----GTTCTTCCEEECTTSC-CC-CSTT-----------------------------------------
T ss_pred -CcCCCCCHHH----hcCCCCCCEEECCCCc-CC-CCCh-----------------------------------------
Confidence 4565554332 3567788888888876 65 3332
Q ss_pred eccCCccccccCCCCCCCCCcceEEEcCCCCcchhccchhhhhhcCCCCCeEEEecCCCcccchhhHHHHHHHHhhhccc
Q 035579 286 CRDTSNQVFLAGPLKPRLPKLEELKINDMKEQTYMWKSHNELLQDICSLRRLTIRSCPKLQSLVAEEEKDQQQQLCELSC 365 (814)
Q Consensus 286 ~~~~~~~~~~~~~~~~~~~~L~~L~~~~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~l~~~~~ 365 (814)
..|.+++.|+.+++++|.+.....+..+..+++|++|+++++ .++.++... +..+.....
T Consensus 142 ---------------~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~~----l~~L~~l~~ 201 (635)
T 4g8a_A 142 ---------------FPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSN-KIQSIYCTD----LRVLHQMPL 201 (635)
T ss_dssp ---------------CCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSS-CCCEECGGG----GHHHHTCTT
T ss_pred ---------------hhhhcCcccCeeccccCccccCCCchhhccchhhhhhcccCc-ccccccccc----ccchhhhhh
Confidence 112333333333333333322223344566777777777774 455554432 222222223
Q ss_pred cccEEEeeccCCccccccccCCCCCcceEeeecCCCCcccC--CCCCCCCCcEEEecccCC-----CCCCchhhhcCCCC
Q 035579 366 RLEYLILSCCEGLVKLPQSSLSLCSLREIGIYKCSSLVSFP--EVALPSKLEKIHIGACDA-----LKSLPEAWMCDTNS 438 (814)
Q Consensus 366 ~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~L~~~~~l~~~~--~~~~~~~L~~L~l~~~~~-----l~~~~~~~~~~~l~ 438 (814)
....++++.|.+.. ++........++.+++.++.....+. .+..+..++...+..+.. +.......+ ....
T Consensus 202 ~~~~~~ls~n~l~~-i~~~~~~~~~~~~l~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~-~~~~ 279 (635)
T 4g8a_A 202 LNLSLDLSLNPMNF-IQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSAL-EGLC 279 (635)
T ss_dssp CCCEEECTTCCCCE-ECTTTTTTCEEEEEEEESCCSSHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCTTTT-GGGG
T ss_pred hhhhhhcccCcccc-cCcccccchhhhhhhhhcccccccccchhhcCCccccccccccccccccccccccccccc-cccc
Confidence 44566676666533 33333334455666666543221111 112233444433322210 111111110 2233
Q ss_pred CccEEEEecCCCCccc----ccccCcCccceeeeccccCCcccccccCCCCCCCCCCCCCCccEEeecCCCCcccccccC
Q 035579 439 SLEILYIEGCRSLTYI----AAVQLPSSLKNLQIHGCYNIKTLTVEEGIPSSSSSRYTSSILEHLSIVGCPSLTCIFSKN 514 (814)
Q Consensus 439 ~L~~L~l~~~~~l~~~----~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~ 514 (814)
.+...++..+..-... .......+++.+.+.++.... ++. ......++.|++.++.... ++ .
T Consensus 280 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~-------~~~----~~~~~~L~~L~l~~~~~~~--~~-~ 345 (635)
T 4g8a_A 280 NLTIEEFRLAYLDYYLDGIIDLFNCLTNVSSFSLVSVTIER-------VKD----FSYNFGWQHLELVNCKFGQ--FP-T 345 (635)
T ss_dssp GSEEEEEEEECCCSCEEECTTTTGGGTTCSEEEEESCEEEE-------CGG----GGSCCCCSEEEEESCEESS--CC-C
T ss_pred chhhhhhhhhhhcccccchhhhhhhhccccccccccccccc-------ccc----cccchhhhhhhcccccccC--cC-c
Confidence 3444443332111100 001122334444444332111 000 0111346666666653221 11 1
Q ss_pred CCcccccEEEEeccCCcchhhHhhcCCCCcceEeecccCCcc--cccccCCCCCCccEEEecCCCCceecCCCCCCCCCc
Q 035579 515 ELPATLESLSVYKCSKLESIAERLDNNTSLETIGINFCENLK--ILPSGLHNLRQLREITIQRCGNLVSFPEGGLPCAKL 592 (814)
Q Consensus 515 ~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~--~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~l~~L 592 (814)
.....|+.+++..+...... ....+++|+.+++++|.+.. ..+..+..+.+|+.+++..+ ....++..+..+++|
T Consensus 346 ~~l~~L~~l~l~~n~~~~~~--~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~~~~~-~~~~~~~~~~~l~~L 422 (635)
T 4g8a_A 346 LKLKSLKRLTFTSNKGGNAF--SEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTISLKYLDLSFN-GVITMSSNFLGLEQL 422 (635)
T ss_dssp CBCTTCCEEEEESCCSCCBC--CCCBCTTCCEEECCSSCCBEEEECCHHHHSCSCCCEEECCSC-SEEEECSCCTTCTTC
T ss_pred ccchhhhhcccccccCCCCc--ccccccccccchhhccccccccccccchhhhhhhhhhhcccc-ccccccccccccccc
Confidence 22346788888776544332 25578899999999988754 44555667889999999887 455666778888999
Q ss_pred ceEeecccccccccc-ccccCCCCcceEEecC-ccCcccc--CCCCCceeEEEecCCcchhhhhhhcccccCCCCcccEE
Q 035579 593 SELRIFQCERLEALP-KGLHNLTSLQELTIGG-ALPSLEE--DGLPTNLHSLDIRGNMEIWKSMIERGRGFHRFSSLRHL 668 (814)
Q Consensus 593 ~~L~l~~~~~l~~lp-~~~~~l~~L~~L~l~~-~~~~l~~--~~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~l~~L~~L 668 (814)
+.+++..+......+ ..+..+++++.++++. .+..... ...+++|++|++++|.......+ ..+..+++|++|
T Consensus 423 ~~l~l~~~~~~~~~~~~~~~~l~~l~~l~ls~n~l~~~~~~~~~~~~~L~~L~Ls~N~~~~~~~~---~~~~~l~~L~~L 499 (635)
T 4g8a_A 423 EHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLP---DIFTELRNLTFL 499 (635)
T ss_dssp CEEECTTSEEESTTSSCTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEEC---SCCTTCTTCCEE
T ss_pred cchhhhhccccccccccccccccccccccccccccccccccccccchhhhhhhhhhcccccccCc---hhhhhccccCEE
Confidence 999999886655544 3567889999999988 4444433 44578999999999986654332 678999999999
Q ss_pred EEecCCCCCccCCccccccCCCCCCCCCcceEEeccCCCCccccc-ccccCCCCCeEEecCCCCCCccCCCCC---cCCc
Q 035579 669 TIDGCDDDMVSFPPEDKRLGTALPLPASLTDLEIGRFPNLERLSS-SIVDLQNLTELCLRDCPKLKYFPEKGL---PSSL 744 (814)
Q Consensus 669 ~l~~~~~~l~~i~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~-~~~~l~~L~~L~l~~c~~l~~lp~~~l---~~~L 744 (814)
++++| .+..++...+ ..+++|++|+|++ |+++.++. .+..+++|+.|++++ ++++.+++..+ +++|
T Consensus 500 ~Ls~N--~L~~l~~~~f------~~l~~L~~L~Ls~-N~l~~l~~~~~~~l~~L~~L~Ls~-N~l~~~~~~~l~~l~~~L 569 (635)
T 4g8a_A 500 DLSQC--QLEQLSPTAF------NSLSSLQVLNMSH-NNFFSLDTFPYKCLNSLQVLDYSL-NHIMTSKKQELQHFPSSL 569 (635)
T ss_dssp ECTTS--CCCEECTTTT------TTCTTCCEEECTT-SCCCBCCCGGGTTCTTCCEEECTT-SCCCBCCSSCTTCCCTTC
T ss_pred ECCCC--ccCCcChHHH------cCCCCCCEEECCC-CcCCCCChhHHhCCCCCCEEECCC-CcCCCCCHHHHHhhhCcC
Confidence 99997 7777766542 5789999999999 78998876 788999999999999 57888877654 5799
Q ss_pred cEEeecCCc
Q 035579 745 LRLSILSCP 753 (814)
Q Consensus 745 ~~L~i~~c~ 753 (814)
++|++++||
T Consensus 570 ~~L~L~~Np 578 (635)
T 4g8a_A 570 AFLNLTQND 578 (635)
T ss_dssp CEEECTTCC
T ss_pred CEEEeeCCC
Confidence 999999876
No 22
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.96 E-value=1.2e-29 Score=278.17 Aligned_cols=296 Identities=24% Similarity=0.257 Sum_probs=130.7
Q ss_pred ccccEEEeeccCCccccccccCCCCCcceEeeecCCCCcccCCCCCCCCCcEEEecccCCCCCCchhhhcCCCCCccEEE
Q 035579 365 CRLEYLILSCCEGLVKLPQSSLSLCSLREIGIYKCSSLVSFPEVALPSKLEKIHIGACDALKSLPEAWMCDTNSSLEILY 444 (814)
Q Consensus 365 ~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~L~~~~~l~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~ 444 (814)
++|++|++++|.+.+ +| .+..+++|++|++++| .++.+|.. +++|++|++++|. +..+|. + ..+++|++|+
T Consensus 131 ~~L~~L~L~~n~l~~-lp-~~~~l~~L~~L~l~~N-~l~~lp~~--~~~L~~L~L~~n~-l~~l~~-~--~~l~~L~~L~ 201 (454)
T 1jl5_A 131 PLLEYLGVSNNQLEK-LP-ELQNSSFLKIIDVDNN-SLKKLPDL--PPSLEFIAAGNNQ-LEELPE-L--QNLPFLTAIY 201 (454)
T ss_dssp TTCCEEECCSSCCSS-CC-CCTTCTTCCEEECCSS-CCSCCCCC--CTTCCEEECCSSC-CSSCCC-C--TTCTTCCEEE
T ss_pred CCCCEEECcCCCCCC-Cc-ccCCCCCCCEEECCCC-cCcccCCC--cccccEEECcCCc-CCcCcc-c--cCCCCCCEEE
Confidence 578888888887654 66 4888888888888886 45556543 4588888888887 666763 3 7788888888
Q ss_pred EecCCCCcccccccCcCccceeeeccccCCcccccccCCCCCCCCCCCCCCccEEeecCCCCcccccccCCCcccccEEE
Q 035579 445 IEGCRSLTYIAAVQLPSSLKNLQIHGCYNIKTLTVEEGIPSSSSSRYTSSILEHLSIVGCPSLTCIFSKNELPATLESLS 524 (814)
Q Consensus 445 l~~~~~l~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~ 524 (814)
+++|. ++.++. .+++|+.|+++++ .++ .+| .....++|++|+
T Consensus 202 l~~N~-l~~l~~--~~~~L~~L~l~~n-~l~------~lp----------------------------~~~~l~~L~~L~ 243 (454)
T 1jl5_A 202 ADNNS-LKKLPD--LPLSLESIVAGNN-ILE------ELP----------------------------ELQNLPFLTTIY 243 (454)
T ss_dssp CCSSC-CSSCCC--CCTTCCEEECCSS-CCS------SCC----------------------------CCTTCTTCCEEE
T ss_pred CCCCc-CCcCCC--CcCcccEEECcCC-cCC------ccc----------------------------ccCCCCCCCEEE
Confidence 88864 333321 2233444444443 111 111 111223444555
Q ss_pred EeccCCcchhhHhhcCCCCcceEeecccCCcccccccCCCCCCccEEEecCCCCceecCCCCCCCCCcceEeeccccccc
Q 035579 525 VYKCSKLESIAERLDNNTSLETIGINFCENLKILPSGLHNLRQLREITIQRCGNLVSFPEGGLPCAKLSELRIFQCERLE 604 (814)
Q Consensus 525 l~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~~~~l~ 604 (814)
+++|... .+|. .+++|+.|++++|.+.+ +|.. +++|++|++++| .+..+|.. .++|++|++++| .+.
T Consensus 244 l~~N~l~-~l~~---~~~~L~~L~l~~N~l~~-l~~~---~~~L~~L~ls~N-~l~~l~~~---~~~L~~L~l~~N-~l~ 310 (454)
T 1jl5_A 244 ADNNLLK-TLPD---LPPSLEALNVRDNYLTD-LPEL---PQSLTFLDVSEN-IFSGLSEL---PPNLYYLNASSN-EIR 310 (454)
T ss_dssp CCSSCCS-SCCS---CCTTCCEEECCSSCCSC-CCCC---CTTCCEEECCSS-CCSEESCC---CTTCCEEECCSS-CCS
T ss_pred CCCCcCC-cccc---cccccCEEECCCCcccc-cCcc---cCcCCEEECcCC-ccCcccCc---CCcCCEEECcCC-cCC
Confidence 5544332 2222 13566666666666554 2322 356666666665 33333321 135666666665 333
Q ss_pred cccccccCCCCcceEEecC-ccCccccCCCCCceeEEEecCCcchhhhhhhcccccCCCCcccEEEEecCCCCCccCCcc
Q 035579 605 ALPKGLHNLTSLQELTIGG-ALPSLEEDGLPTNLHSLDIRGNMEIWKSMIERGRGFHRFSSLRHLTIDGCDDDMVSFPPE 683 (814)
Q Consensus 605 ~lp~~~~~l~~L~~L~l~~-~~~~l~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~l~~i~~~ 683 (814)
.++.. .++|+.|++++ .+..++.. +++|++|++++|..... + . .+++|++|++++| .+..+|.
T Consensus 311 ~i~~~---~~~L~~L~Ls~N~l~~lp~~--~~~L~~L~L~~N~l~~l-p----~---~l~~L~~L~L~~N--~l~~l~~- 374 (454)
T 1jl5_A 311 SLCDL---PPSLEELNVSNNKLIELPAL--PPRLERLIASFNHLAEV-P----E---LPQNLKQLHVEYN--PLREFPD- 374 (454)
T ss_dssp EECCC---CTTCCEEECCSSCCSCCCCC--CTTCCEEECCSSCCSCC-C----C---CCTTCCEEECCSS--CCSSCCC-
T ss_pred cccCC---cCcCCEEECCCCcccccccc--CCcCCEEECCCCccccc-c----c---hhhhccEEECCCC--CCCcCCC-
Confidence 33211 13555555555 44443322 35555555555544321 1 1 2455555555554 3333221
Q ss_pred ccccCCCCCCCCCcceEEeccCCCCcccccccccCCCCCeEEecCCCCCCccCCCCCcCCccEEeecCCc
Q 035579 684 DKRLGTALPLPASLTDLEIGRFPNLERLSSSIVDLQNLTELCLRDCPKLKYFPEKGLPSSLLRLSILSCP 753 (814)
Q Consensus 684 ~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~l~~L~~L~l~~c~~l~~lp~~~l~~~L~~L~i~~c~ 753 (814)
.+..+..|. .++....+|. .+++|+.|+++++ .++.+|. +|++++.|.+.+|.
T Consensus 375 ---------ip~~l~~L~--~n~~~~~i~~---~~~~L~~L~ls~N-~l~~~~~--iP~sl~~L~~~~~~ 427 (454)
T 1jl5_A 375 ---------IPESVEDLR--MNSHLAEVPE---LPQNLKQLHVETN-PLREFPD--IPESVEDLRMNSER 427 (454)
T ss_dssp ---------CCTTCCEEE--CCC-----------------------------------------------
T ss_pred ---------ChHHHHhhh--hccccccccc---ccCcCCEEECCCC-cCCcccc--chhhHhheeCcCcc
Confidence 112222222 2223333332 2378999999884 6776654 67788888888764
No 23
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.96 E-value=6.6e-28 Score=274.20 Aligned_cols=102 Identities=17% Similarity=0.126 Sum_probs=63.8
Q ss_pred CcCcccEEEeeeCCCCCCccccCCCCCcccEEEEecCCCCCCCC-CCCCCCccceeeecCCcCceeeCccccCCCCCCCC
Q 035579 117 HKNLEQFGICGYGGTKFPTWLGDCSFSNLVTLKFKDCGVCTTLP-SVGQLSSLKHLTVRGMSRVKSLGSEFYGNDSPIPF 195 (814)
Q Consensus 117 ~~~L~~L~l~~~~~~~~p~~~~~~~l~~L~~L~L~~~~~~~~l~-~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~ 195 (814)
+...++++++++.++.+|..+. ++|++|++++|.+....+ .++++++|++|++++| .++.+....++ .+
T Consensus 30 ~~~~~~l~ls~~~L~~ip~~~~----~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~-----~l 99 (562)
T 3a79_B 30 NELESMVDYSNRNLTHVPKDLP----PRTKALSLSQNSISELRMPDISFLSELRVLRLSHN-RIRSLDFHVFL-----FN 99 (562)
T ss_dssp ---CCEEECTTSCCCSCCTTSC----TTCCEEECCSSCCCCCCGGGTTTCTTCCEEECCSC-CCCEECTTTTT-----TC
T ss_pred cCCCcEEEcCCCCCccCCCCCC----CCcCEEECCCCCccccChhhhccCCCccEEECCCC-CCCcCCHHHhC-----CC
Confidence 3344788888888888886552 788888998888554443 5888888888888886 45544332222 15
Q ss_pred CCcceeeccccccccccccCCCCCCcccCCcccEEEEccCC
Q 035579 196 PCLETLRFENMQEWEDWIPLRSDQGVEGFPKLRELHIISCS 236 (814)
Q Consensus 196 ~~L~~L~l~~~~~l~~~~~~~~~~~~~~l~~L~~L~l~~c~ 236 (814)
++|++|++++ +.++.+.. . .+++|++|++++|.
T Consensus 100 ~~L~~L~Ls~-N~l~~lp~------~-~l~~L~~L~Ls~N~ 132 (562)
T 3a79_B 100 QDLEYLDVSH-NRLQNISC------C-PMASLRHLDLSFND 132 (562)
T ss_dssp TTCCEEECTT-SCCCEECS------C-CCTTCSEEECCSSC
T ss_pred CCCCEEECCC-CcCCccCc------c-ccccCCEEECCCCC
Confidence 6666666666 33443321 1 45666666666665
No 24
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.96 E-value=5.9e-28 Score=280.17 Aligned_cols=198 Identities=19% Similarity=0.138 Sum_probs=126.4
Q ss_pred cccEEEEeccCCc--chhhHhhcCCCCcceEeecccCCcccccccCCCCCCccEEEecCCCCceecCC-CCCCCCCcceE
Q 035579 519 TLESLSVYKCSKL--ESIAERLDNNTSLETIGINFCENLKILPSGLHNLRQLREITIQRCGNLVSFPE-GGLPCAKLSEL 595 (814)
Q Consensus 519 ~L~~L~l~~~~~~--~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~-~~~~l~~L~~L 595 (814)
+|+.+++++|... ...+..+..+.+|+.+++..+..... +..+..+++|+.+++.++......+. .+..+++++.+
T Consensus 372 ~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~~~~~~~~~~-~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~l~~l~~l 450 (635)
T 4g8a_A 372 SLEFLDLSRNGLSFKGCCSQSDFGTISLKYLDLSFNGVITM-SSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYL 450 (635)
T ss_dssp TCCEEECCSSCCBEEEECCHHHHSCSCCCEEECCSCSEEEE-CSCCTTCTTCCEEECTTSEEESTTSSCTTTTCTTCCEE
T ss_pred ccccchhhccccccccccccchhhhhhhhhhhccccccccc-cccccccccccchhhhhccccccccccccccccccccc
Confidence 4444444444332 12344455566666666666555432 33455666777777766543333332 34556667777
Q ss_pred eeccccccccccccccCCCCcceEEecC-c-cCcc-cc-CCCCCceeEEEecCCcchhhhhhhcccccCCCCcccEEEEe
Q 035579 596 RIFQCERLEALPKGLHNLTSLQELTIGG-A-LPSL-EE-DGLPTNLHSLDIRGNMEIWKSMIERGRGFHRFSSLRHLTID 671 (814)
Q Consensus 596 ~l~~~~~l~~lp~~~~~l~~L~~L~l~~-~-~~~l-~~-~~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~l~~L~~L~l~ 671 (814)
+++.|......+..+..+++|+.|++++ . ...+ +. ...+++|++|++++|.+....+ ..|.++++|++|+|+
T Consensus 451 ~ls~n~l~~~~~~~~~~~~~L~~L~Ls~N~~~~~~~~~~~~~l~~L~~L~Ls~N~L~~l~~----~~f~~l~~L~~L~Ls 526 (635)
T 4g8a_A 451 DISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSP----TAFNSLSSLQVLNMS 526 (635)
T ss_dssp ECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECT----TTTTTCTTCCEEECT
T ss_pred cccccccccccccccccchhhhhhhhhhcccccccCchhhhhccccCEEECCCCccCCcCh----HHHcCCCCCCEEECC
Confidence 7776654444555666667777777766 2 2222 11 3446788888888887666544 568888999999999
Q ss_pred cCCCCCccCCccccccCCCCCCCCCcceEEeccCCCCccccc-ccccC-CCCCeEEecCCC
Q 035579 672 GCDDDMVSFPPEDKRLGTALPLPASLTDLEIGRFPNLERLSS-SIVDL-QNLTELCLRDCP 730 (814)
Q Consensus 672 ~~~~~l~~i~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~-~~~~l-~~L~~L~l~~c~ 730 (814)
+| .+..++...+ ..+++|++|++++ |+++.+++ .+..+ ++|+.|+++++|
T Consensus 527 ~N--~l~~l~~~~~------~~l~~L~~L~Ls~-N~l~~~~~~~l~~l~~~L~~L~L~~Np 578 (635)
T 4g8a_A 527 HN--NFFSLDTFPY------KCLNSLQVLDYSL-NHIMTSKKQELQHFPSSLAFLNLTQND 578 (635)
T ss_dssp TS--CCCBCCCGGG------TTCTTCCEEECTT-SCCCBCCSSCTTCCCTTCCEEECTTCC
T ss_pred CC--cCCCCChhHH------hCCCCCCEEECCC-CcCCCCCHHHHHhhhCcCCEEEeeCCC
Confidence 87 7777776543 5678999999999 67777765 67776 689999998865
No 25
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.96 E-value=2.2e-27 Score=269.88 Aligned_cols=127 Identities=19% Similarity=0.143 Sum_probs=68.3
Q ss_pred ccccEEEEeccCCcc--hhhHhhcCCCCcceEeecccCCcccccc-cCCCCCCccEEEecCCCCceecCCCCCCCCCcce
Q 035579 518 ATLESLSVYKCSKLE--SIAERLDNNTSLETIGINFCENLKILPS-GLHNLRQLREITIQRCGNLVSFPEGGLPCAKLSE 594 (814)
Q Consensus 518 ~~L~~L~l~~~~~~~--~~~~~~~~l~~L~~L~L~~n~~~~~~~~-~~~~l~~L~~L~l~~~~~l~~~~~~~~~l~~L~~ 594 (814)
++|+.|++++|.... .+|..+..+++|+.|++++|.+.+.+|. .+..+++|++|++++|.....+|..+. ++|++
T Consensus 377 ~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~--~~L~~ 454 (562)
T 3a79_B 377 KRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAESILVLNLSSNMLTGSVFRCLP--PKVKV 454 (562)
T ss_dssp SSCCEEECCSSCCCBTTHHHHTTTTCTTCCEEECTTSCCBSCCSSCCCCCCTTCCEEECCSSCCCGGGGSSCC--TTCSE
T ss_pred CCCCEEECCCCCcCCcccchhhhcCCCCCCEEECCCCcCCCccChhhhcCcccCCEEECCCCCCCcchhhhhc--CcCCE
Confidence 345555555554433 3445566666666666666666653333 355566666666666643333333322 46666
Q ss_pred EeeccccccccccccccCCCCcceEEecC-ccCcccc--CCCCCceeEEEecCCcc
Q 035579 595 LRIFQCERLEALPKGLHNLTSLQELTIGG-ALPSLEE--DGLPTNLHSLDIRGNME 647 (814)
Q Consensus 595 L~l~~~~~l~~lp~~~~~l~~L~~L~l~~-~~~~l~~--~~~~~~L~~L~l~~n~~ 647 (814)
|++++| .++.+|..+..+++|+.|++++ .+..++. ...+++|+.|++++|+.
T Consensus 455 L~L~~N-~l~~ip~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~l~~N~~ 509 (562)
T 3a79_B 455 LDLHNN-RIMSIPKDVTHLQALQELNVASNQLKSVPDGVFDRLTSLQYIWLHDNPW 509 (562)
T ss_dssp EECCSS-CCCCCCTTTTSSCCCSEEECCSSCCCCCCTTSTTTCTTCCCEECCSCCB
T ss_pred EECCCC-cCcccChhhcCCCCCCEEECCCCCCCCCCHHHHhcCCCCCEEEecCCCc
Confidence 666666 4555665555555666665555 4444443 23344455555555543
No 26
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.95 E-value=1.2e-26 Score=254.54 Aligned_cols=361 Identities=22% Similarity=0.266 Sum_probs=196.7
Q ss_pred ccCCCCCCCCCcceEEEcCCCCcchhccchhhhhhcCCCCCeEEEecCCCcccchhhHHHHHHHHhhhccccccEEEeec
Q 035579 295 LAGPLKPRLPKLEELKINDMKEQTYMWKSHNELLQDICSLRRLTIRSCPKLQSLVAEEEKDQQQQLCELSCRLEYLILSC 374 (814)
Q Consensus 295 ~~~~~~~~~~~L~~L~~~~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~l~~~~~~L~~L~L~~ 374 (814)
+.|.+|..+.+++.|+.+++... ...++++|++++| .++.++. .+++|++|++++
T Consensus 46 ~~~~~p~~~~~l~~L~~l~l~~c------------~~~~l~~L~l~~~-~l~~lp~------------~~~~L~~L~l~~ 100 (454)
T 1jl5_A 46 WERNAPPGNGEQREMAVSRLRDC------------LDRQAHELELNNL-GLSSLPE------------LPPHLESLVASC 100 (454)
T ss_dssp HHHTSCTTSCCCHHHHHHHHHHH------------HHHTCSEEECTTS-CCSCCCS------------CCTTCSEEECCS
T ss_pred ccccCCcccccchhcchhhhhhh------------hccCCCEEEecCC-ccccCCC------------CcCCCCEEEccC
Confidence 44455556666665544433211 1256788888886 4666544 137899999998
Q ss_pred cCCccccccccCCCCCcceEeeecCCCCcccCCCCCCCCCcEEEecccCCCCCCchhhhcCCCCCccEEEEecCCCCccc
Q 035579 375 CEGLVKLPQSSLSLCSLREIGIYKCSSLVSFPEVALPSKLEKIHIGACDALKSLPEAWMCDTNSSLEILYIEGCRSLTYI 454 (814)
Q Consensus 375 ~~~~~~~~~~~~~l~~L~~L~L~~~~~l~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~~ 454 (814)
|.+.+ +|.. +++|++|++++| .++.++.. +++|++|++++|. +..+|. + ..+++|++|++++|. ++.+
T Consensus 101 n~l~~-lp~~---~~~L~~L~l~~n-~l~~l~~~--~~~L~~L~L~~n~-l~~lp~-~--~~l~~L~~L~l~~N~-l~~l 168 (454)
T 1jl5_A 101 NSLTE-LPEL---PQSLKSLLVDNN-NLKALSDL--PPLLEYLGVSNNQ-LEKLPE-L--QNSSFLKIIDVDNNS-LKKL 168 (454)
T ss_dssp SCCSS-CCCC---CTTCCEEECCSS-CCSCCCSC--CTTCCEEECCSSC-CSSCCC-C--TTCTTCCEEECCSSC-CSCC
T ss_pred CcCCc-cccc---cCCCcEEECCCC-ccCcccCC--CCCCCEEECcCCC-CCCCcc-c--CCCCCCCEEECCCCc-Cccc
Confidence 88755 6643 478899999885 55555533 3789999999987 666774 4 888999999999864 5555
Q ss_pred ccccCcCccceeeeccccCCcccccccCCCCCCCCCCCCCCccEEeecCCCCcccccccCCCcccccEEEEeccCCcchh
Q 035579 455 AAVQLPSSLKNLQIHGCYNIKTLTVEEGIPSSSSSRYTSSILEHLSIVGCPSLTCIFSKNELPATLESLSVYKCSKLESI 534 (814)
Q Consensus 455 ~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~l~~~~~~~~~ 534 (814)
+. .+.+|++|+++++ .++ .+|+ ...+++|++|+++++...+ ++ ..+++|++|++++|... .+
T Consensus 169 p~--~~~~L~~L~L~~n-~l~------~l~~----~~~l~~L~~L~l~~N~l~~--l~--~~~~~L~~L~l~~n~l~-~l 230 (454)
T 1jl5_A 169 PD--LPPSLEFIAAGNN-QLE------ELPE----LQNLPFLTAIYADNNSLKK--LP--DLPLSLESIVAGNNILE-EL 230 (454)
T ss_dssp CC--CCTTCCEEECCSS-CCS------SCCC----CTTCTTCCEEECCSSCCSS--CC--CCCTTCCEEECCSSCCS-SC
T ss_pred CC--CcccccEEECcCC-cCC------cCcc----ccCCCCCCEEECCCCcCCc--CC--CCcCcccEEECcCCcCC-cc
Confidence 53 3457888888876 343 3332 2334667777777764322 11 12346777777776444 55
Q ss_pred hHhhcCCCCcceEeecccCCcccccccCCCCCCccEEEecCCCCceecCCCCCCCCCcceEeeccccccccccccccCCC
Q 035579 535 AERLDNNTSLETIGINFCENLKILPSGLHNLRQLREITIQRCGNLVSFPEGGLPCAKLSELRIFQCERLEALPKGLHNLT 614 (814)
Q Consensus 535 ~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~~~~l~~lp~~~~~l~ 614 (814)
| .++.+++|++|++++|.+.+ +|. .+++|++|++++| .+..+|.. +++|++|++++| .++.+|.. .+
T Consensus 231 p-~~~~l~~L~~L~l~~N~l~~-l~~---~~~~L~~L~l~~N-~l~~l~~~---~~~L~~L~ls~N-~l~~l~~~---~~ 297 (454)
T 1jl5_A 231 P-ELQNLPFLTTIYADNNLLKT-LPD---LPPSLEALNVRDN-YLTDLPEL---PQSLTFLDVSEN-IFSGLSEL---PP 297 (454)
T ss_dssp C-CCTTCTTCCEEECCSSCCSS-CCS---CCTTCCEEECCSS-CCSCCCCC---CTTCCEEECCSS-CCSEESCC---CT
T ss_pred c-ccCCCCCCCEEECCCCcCCc-ccc---cccccCEEECCCC-cccccCcc---cCcCCEEECcCC-ccCcccCc---CC
Confidence 5 36667777777777766654 232 2356777777766 34445542 246777777666 34433321 14
Q ss_pred CcceEEecC-ccCccccCCCCCceeEEEecCCcchhhhhhhcccccCCCCcccEEEEecCCCCCccCCccccccCCCCCC
Q 035579 615 SLQELTIGG-ALPSLEEDGLPTNLHSLDIRGNMEIWKSMIERGRGFHRFSSLRHLTIDGCDDDMVSFPPEDKRLGTALPL 693 (814)
Q Consensus 615 ~L~~L~l~~-~~~~l~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~l~~i~~~~~~~~~~~~~ 693 (814)
+|+.|++++ .+..++. .+++|++|++++|.....+ . .+++|++|++++| .+..+|. .
T Consensus 298 ~L~~L~l~~N~l~~i~~--~~~~L~~L~Ls~N~l~~lp-----~---~~~~L~~L~L~~N--~l~~lp~-~--------- 355 (454)
T 1jl5_A 298 NLYYLNASSNEIRSLCD--LPPSLEELNVSNNKLIELP-----A---LPPRLERLIASFN--HLAEVPE-L--------- 355 (454)
T ss_dssp TCCEEECCSSCCSEECC--CCTTCCEEECCSSCCSCCC-----C---CCTTCCEEECCSS--CCSCCCC-C---------
T ss_pred cCCEEECcCCcCCcccC--CcCcCCEEECCCCcccccc-----c---cCCcCCEEECCCC--ccccccc-h---------
Confidence 666666666 4444332 2346666666666544311 1 1456666666665 4445554 1
Q ss_pred CCCcceEEeccCCCCcccccccccCCCCCeEEecCCCCCCccCCCCCcCCccEEeecCCc
Q 035579 694 PASLTDLEIGRFPNLERLSSSIVDLQNLTELCLRDCPKLKYFPEKGLPSSLLRLSILSCP 753 (814)
Q Consensus 694 ~~~L~~L~l~~~~~l~~l~~~~~~l~~L~~L~l~~c~~l~~lp~~~l~~~L~~L~i~~c~ 753 (814)
+++|++|++++ |.++.+|..- ..+..|. .+.....+|. .+++|++|++++|+
T Consensus 356 l~~L~~L~L~~-N~l~~l~~ip---~~l~~L~--~n~~~~~i~~--~~~~L~~L~ls~N~ 407 (454)
T 1jl5_A 356 PQNLKQLHVEY-NPLREFPDIP---ESVEDLR--MNSHLAEVPE--LPQNLKQLHVETNP 407 (454)
T ss_dssp CTTCCEEECCS-SCCSSCCCCC---TTCCEEE--CCC-----------------------
T ss_pred hhhccEEECCC-CCCCcCCCCh---HHHHhhh--hccccccccc--ccCcCCEEECCCCc
Confidence 45666666666 4444433100 1122222 2233444444 35789999999875
No 27
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.95 E-value=1e-26 Score=257.67 Aligned_cols=314 Identities=16% Similarity=0.153 Sum_probs=141.4
Q ss_pred CCCCcceEEEcCCCCcchhccchhhhhhcCCCCCeEEEecCCCccc-chhhHHHHHHHHhhhccccccEEEeeccCCccc
Q 035579 302 RLPKLEELKINDMKEQTYMWKSHNELLQDICSLRRLTIRSCPKLQS-LVAEEEKDQQQQLCELSCRLEYLILSCCEGLVK 380 (814)
Q Consensus 302 ~~~~L~~L~~~~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~-l~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~ 380 (814)
.|.+++.|+.++++++.+. ...+..+..+++|++|++++|. +.. ++.. ..+..+ ++|++|++++|.+.+.
T Consensus 74 ~~~~l~~L~~L~Ls~n~l~-~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~---~~~~~l----~~L~~L~L~~n~l~~~ 144 (455)
T 3v47_A 74 TFRGLSSLIILKLDYNQFL-QLETGAFNGLANLEVLTLTQCN-LDGAVLSG---NFFKPL----TSLEMLVLRDNNIKKI 144 (455)
T ss_dssp TTTTCTTCCEEECTTCTTC-EECTTTTTTCTTCCEEECTTSC-CBTHHHHS---STTTTC----TTCCEEECCSSBCCSC
T ss_pred cccccccCCEEeCCCCccC-ccChhhccCcccCCEEeCCCCC-CCccccCc---ccccCc----ccCCEEECCCCccCcc
Confidence 3555555555555555542 2234445556666666666642 322 1111 002222 5566666666665444
Q ss_pred cccc-cCCCCCcceEeeecCCCCcccCC-CCC--CCCCcEEEecccCCCCCCchhhhc-------CCCCCccEEEEecCC
Q 035579 381 LPQS-SLSLCSLREIGIYKCSSLVSFPE-VAL--PSKLEKIHIGACDALKSLPEAWMC-------DTNSSLEILYIEGCR 449 (814)
Q Consensus 381 ~~~~-~~~l~~L~~L~L~~~~~l~~~~~-~~~--~~~L~~L~l~~~~~l~~~~~~~~~-------~~l~~L~~L~l~~~~ 449 (814)
.|.. +..+++|++|++++|......+. +.. ..+|+.|++++|. +..++...+. ..+++|++|++++|.
T Consensus 145 ~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~~~L~~L~l~~n~-l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~ 223 (455)
T 3v47_A 145 QPASFFLNMRRFHVLDLTFNKVKSICEEDLLNFQGKHFTLLRLSSIT-LQDMNEYWLGWEKCGNPFKNTSITTLDLSGNG 223 (455)
T ss_dssp CCCGGGGGCTTCCEEECTTCCBSCCCTTTSGGGTTCEEEEEECTTCB-CTTCSTTCTTHHHHCCTTTTCEEEEEECTTSC
T ss_pred CcccccCCCCcccEEeCCCCcccccChhhhhccccccccccccccCc-ccccchhhccccccccccccceeeeEecCCCc
Confidence 4443 55566666666665432222221 111 1455666666655 3333322110 133556666666544
Q ss_pred CCcccccc----cCcCccceeeeccccCCcccccccCCCCCCCCCCCCCCccEEeecCCCCcccccccCCCcccccEEEE
Q 035579 450 SLTYIAAV----QLPSSLKNLQIHGCYNIKTLTVEEGIPSSSSSRYTSSILEHLSIVGCPSLTCIFSKNELPATLESLSV 525 (814)
Q Consensus 450 ~l~~~~~~----~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~l 525 (814)
.....+.. ....+++.++++++.......... .+....... +. ....++|+.|++
T Consensus 224 l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~-------------~~~~~~~~~-------~~-~~~~~~L~~L~l 282 (455)
T 3v47_A 224 FKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHT-------------NFKDPDNFT-------FK-GLEASGVKTCDL 282 (455)
T ss_dssp CCHHHHHHHHHHTTTCCEEEEECTTCTTTSCCTTCC-------------SSCCCCTTT-------TG-GGTTSCCCEEEC
T ss_pred ccccchhhhhccccccceeeEeeccccccccccchh-------------hhccCcccc-------cc-cccccCceEEEe
Confidence 22222111 111334444444442211000000 000000000 00 001135666666
Q ss_pred eccCCcchhhHhhcCCCCcceEeecccCCcccccccCCCCCCccEEEecCCCCceecCCCCCCCCCcceEeecccccccc
Q 035579 526 YKCSKLESIAERLDNNTSLETIGINFCENLKILPSGLHNLRQLREITIQRCGNLVSFPEGGLPCAKLSELRIFQCERLEA 605 (814)
Q Consensus 526 ~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~~~~l~~ 605 (814)
++|...+..|..++.+++|++|++++|.+.+..|..+..+++|++|++++|......|..+..+++|++|++++|.....
T Consensus 283 ~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~ 362 (455)
T 3v47_A 283 SKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDLSYNHIRAL 362 (455)
T ss_dssp CSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGGTTCTTCCEEECCSSCCCEE
T ss_pred cCccccccchhhcccCCCCCEEECCCCcccccChhHhcCcccCCEEECCCCccCCcChhHhcCcccCCEEECCCCccccc
Confidence 66655555555566666666666666666655555566666666666666533222233455556666666666633333
Q ss_pred ccccccCCCCcceEEecC-ccCcccc--CCCCCceeEEEecCCc
Q 035579 606 LPKGLHNLTSLQELTIGG-ALPSLEE--DGLPTNLHSLDIRGNM 646 (814)
Q Consensus 606 lp~~~~~l~~L~~L~l~~-~~~~l~~--~~~~~~L~~L~l~~n~ 646 (814)
.|..+..+++|++|++++ .+..++. ...+++|++|++++|+
T Consensus 363 ~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~ 406 (455)
T 3v47_A 363 GDQSFLGLPNLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNP 406 (455)
T ss_dssp CTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSC
T ss_pred ChhhccccccccEEECCCCccccCCHhHhccCCcccEEEccCCC
Confidence 344555555555555554 4443332 1223444444444443
No 28
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.94 E-value=6.1e-26 Score=251.48 Aligned_cols=347 Identities=18% Similarity=0.171 Sum_probs=177.3
Q ss_pred cCCCCCeEEEecCCCcccchhhHHHHHHHHhhhccccccEEEeeccCCccccccccCCCCCcceEeeecCCCCcccCCCC
Q 035579 330 DICSLRRLTIRSCPKLQSLVAEEEKDQQQQLCELSCRLEYLILSCCEGLVKLPQSSLSLCSLREIGIYKCSSLVSFPEVA 409 (814)
Q Consensus 330 ~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~L~~~~~l~~~~~~~ 409 (814)
.+++++.|+++++ .++.++. +..+ ++|++|++++|.+.. ++. +..+++|++|++++| .++.++.+.
T Consensus 44 ~l~~l~~L~l~~~-~i~~l~~------~~~l----~~L~~L~Ls~n~l~~-~~~-~~~l~~L~~L~l~~n-~l~~~~~~~ 109 (466)
T 1o6v_A 44 DLDQVTTLQADRL-GIKSIDG------VEYL----NNLTQINFSNNQLTD-ITP-LKNLTKLVDILMNNN-QIADITPLA 109 (466)
T ss_dssp HHHTCCEEECCSS-CCCCCTT------GGGC----TTCCEEECCSSCCCC-CGG-GTTCTTCCEEECCSS-CCCCCGGGT
T ss_pred HhccccEEecCCC-CCccCcc------hhhh----cCCCEEECCCCccCC-chh-hhccccCCEEECCCC-ccccChhhc
Confidence 3556677777664 4444432 2222 677777777776543 333 677777777777775 344444466
Q ss_pred CCCCCcEEEecccCCCCCCchhhhcCCCCCccEEEEecCCCCcccccccCcCccceeeeccccCCcccccccCCCCCCCC
Q 035579 410 LPSKLEKIHIGACDALKSLPEAWMCDTNSSLEILYIEGCRSLTYIAAVQLPSSLKNLQIHGCYNIKTLTVEEGIPSSSSS 489 (814)
Q Consensus 410 ~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~ 489 (814)
.+++|++|++++|. +..++. + ..+++|++|++++|. +..++....+++|+.|.+.+ .+. .++.
T Consensus 110 ~l~~L~~L~L~~n~-l~~~~~-~--~~l~~L~~L~l~~n~-l~~~~~~~~l~~L~~L~l~~--~~~------~~~~---- 172 (466)
T 1o6v_A 110 NLTNLTGLTLFNNQ-ITDIDP-L--KNLTNLNRLELSSNT-ISDISALSGLTSLQQLSFGN--QVT------DLKP---- 172 (466)
T ss_dssp TCTTCCEEECCSSC-CCCCGG-G--TTCTTCSEEEEEEEE-ECCCGGGTTCTTCSEEEEEE--SCC------CCGG----
T ss_pred CCCCCCEEECCCCC-CCCChH-H--cCCCCCCEEECCCCc-cCCChhhccCCcccEeecCC--ccc------Cchh----
Confidence 67777777777776 555554 2 667777777777753 44444444455566666542 111 1111
Q ss_pred CCCCCCccEEeecCCCCcccccccCCCcccccEEEEeccCCcchhhHhhcCCCCcceEeecccCCcccccccCCCCCCcc
Q 035579 490 RYTSSILEHLSIVGCPSLTCIFSKNELPATLESLSVYKCSKLESIAERLDNNTSLETIGINFCENLKILPSGLHNLRQLR 569 (814)
Q Consensus 490 ~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~ 569 (814)
...+++|++|+++++.. .. .+....+++|+.|++++|......+ ++.+++|+.|++++|.+... ..+..+++|+
T Consensus 173 ~~~l~~L~~L~l~~n~l-~~-~~~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~ 246 (466)
T 1o6v_A 173 LANLTTLERLDISSNKV-SD-ISVLAKLTNLESLIATNNQISDITP--LGILTNLDELSLNGNQLKDI--GTLASLTNLT 246 (466)
T ss_dssp GTTCTTCCEEECCSSCC-CC-CGGGGGCTTCSEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCC--GGGGGCTTCS
T ss_pred hccCCCCCEEECcCCcC-CC-ChhhccCCCCCEEEecCCccccccc--ccccCCCCEEECCCCCcccc--hhhhcCCCCC
Confidence 12234455555555432 11 1222233455555555554443333 44555555555555554432 2344555555
Q ss_pred EEEecCCCCceecCCCCCCCCCcceEeeccccccccccccccCCCCcceEEecC-ccCccccCCCCCceeEEEecCCcch
Q 035579 570 EITIQRCGNLVSFPEGGLPCAKLSELRIFQCERLEALPKGLHNLTSLQELTIGG-ALPSLEEDGLPTNLHSLDIRGNMEI 648 (814)
Q Consensus 570 ~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~~~~l~~lp~~~~~l~~L~~L~l~~-~~~~l~~~~~~~~L~~L~l~~n~~~ 648 (814)
+|++++|. +..++. +..+++|++|++++| .+..++. +..+++|+.|++++ .+..++....+++|++|++++|...
T Consensus 247 ~L~l~~n~-l~~~~~-~~~l~~L~~L~l~~n-~l~~~~~-~~~l~~L~~L~L~~n~l~~~~~~~~l~~L~~L~L~~n~l~ 322 (466)
T 1o6v_A 247 DLDLANNQ-ISNLAP-LSGLTKLTELKLGAN-QISNISP-LAGLTALTNLELNENQLEDISPISNLKNLTYLTLYFNNIS 322 (466)
T ss_dssp EEECCSSC-CCCCGG-GTTCTTCSEEECCSS-CCCCCGG-GTTCTTCSEEECCSSCCSCCGGGGGCTTCSEEECCSSCCS
T ss_pred EEECCCCc-cccchh-hhcCCCCCEEECCCC-ccCcccc-ccCCCccCeEEcCCCcccCchhhcCCCCCCEEECcCCcCC
Confidence 55555552 233322 444555555555555 3333332 44555555555555 4444443344455555555555444
Q ss_pred hhhhhhcccccCCCCcccEEEEecCCCCCccCCccccccCCCCCCCCCcceEEeccCCCCcccccccccCCCCCeEEecC
Q 035579 649 WKSMIERGRGFHRFSSLRHLTIDGCDDDMVSFPPEDKRLGTALPLPASLTDLEIGRFPNLERLSSSIVDLQNLTELCLRD 728 (814)
Q Consensus 649 ~~~~~~~~~~l~~l~~L~~L~l~~~~~~l~~i~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~l~~L~~L~l~~ 728 (814)
... .+..+++|++|++++| .+..++. . ..+++|+.|++++ +.+..+++ +..+++|+.|++++
T Consensus 323 ~~~------~~~~l~~L~~L~l~~n--~l~~~~~-l-------~~l~~L~~L~l~~-n~l~~~~~-~~~l~~L~~L~l~~ 384 (466)
T 1o6v_A 323 DIS------PVSSLTKLQRLFFYNN--KVSDVSS-L-------ANLTNINWLSAGH-NQISDLTP-LANLTRITQLGLND 384 (466)
T ss_dssp CCG------GGGGCTTCCEEECCSS--CCCCCGG-G-------TTCTTCCEEECCS-SCCCBCGG-GTTCTTCCEEECCC
T ss_pred Cch------hhccCccCCEeECCCC--ccCCchh-h-------ccCCCCCEEeCCC-CccCccch-hhcCCCCCEEeccC
Confidence 332 1345555555555554 3333321 1 2455555555555 33444432 45555555555555
Q ss_pred CCCCCccC
Q 035579 729 CPKLKYFP 736 (814)
Q Consensus 729 c~~l~~lp 736 (814)
| .++.+|
T Consensus 385 n-~~~~~p 391 (466)
T 1o6v_A 385 Q-AWTNAP 391 (466)
T ss_dssp E-EEECCC
T ss_pred C-cccCCc
Confidence 3 344433
No 29
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.94 E-value=5e-25 Score=244.11 Aligned_cols=341 Identities=18% Similarity=0.168 Sum_probs=272.5
Q ss_pred ccccEEEeeccCCccccccccCCCCCcceEeeecCCCCcccCCCCCCCCCcEEEecccCCCCCCchhhhcCCCCCccEEE
Q 035579 365 CRLEYLILSCCEGLVKLPQSSLSLCSLREIGIYKCSSLVSFPEVALPSKLEKIHIGACDALKSLPEAWMCDTNSSLEILY 444 (814)
Q Consensus 365 ~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~L~~~~~l~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~ 444 (814)
++++.|+++++.+ ..+| .+..+++|++|++++| .++.++.+..+++|++|++++|. +..++. + ..+++|++|+
T Consensus 46 ~~l~~L~l~~~~i-~~l~-~~~~l~~L~~L~Ls~n-~l~~~~~~~~l~~L~~L~l~~n~-l~~~~~-~--~~l~~L~~L~ 118 (466)
T 1o6v_A 46 DQVTTLQADRLGI-KSID-GVEYLNNLTQINFSNN-QLTDITPLKNLTKLVDILMNNNQ-IADITP-L--ANLTNLTGLT 118 (466)
T ss_dssp HTCCEEECCSSCC-CCCT-TGGGCTTCCEEECCSS-CCCCCGGGTTCTTCCEEECCSSC-CCCCGG-G--TTCTTCCEEE
T ss_pred ccccEEecCCCCC-ccCc-chhhhcCCCEEECCCC-ccCCchhhhccccCCEEECCCCc-cccChh-h--cCCCCCCEEE
Confidence 7899999999986 4566 4788999999999996 56666668889999999999998 666666 4 8899999999
Q ss_pred EecCCCCcccccccCcCccceeeeccccCCcccccccCCCCCCCCCCCCCCccEEeecCCCCcccccccCCCcccccEEE
Q 035579 445 IEGCRSLTYIAAVQLPSSLKNLQIHGCYNIKTLTVEEGIPSSSSSRYTSSILEHLSIVGCPSLTCIFSKNELPATLESLS 524 (814)
Q Consensus 445 l~~~~~l~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~ 524 (814)
+++| .++.++....+++|++|+++++. +. .++. ...+++|++|++++. +.. .+....+++|+.|+
T Consensus 119 L~~n-~l~~~~~~~~l~~L~~L~l~~n~-l~------~~~~----~~~l~~L~~L~l~~~--~~~-~~~~~~l~~L~~L~ 183 (466)
T 1o6v_A 119 LFNN-QITDIDPLKNLTNLNRLELSSNT-IS------DISA----LSGLTSLQQLSFGNQ--VTD-LKPLANLTTLERLD 183 (466)
T ss_dssp CCSS-CCCCCGGGTTCTTCSEEEEEEEE-EC------CCGG----GTTCTTCSEEEEEES--CCC-CGGGTTCTTCCEEE
T ss_pred CCCC-CCCCChHHcCCCCCCEEECCCCc-cC------CChh----hccCCcccEeecCCc--ccC-chhhccCCCCCEEE
Confidence 9996 46666666677889999999884 33 2221 334578999999742 233 23355567899999
Q ss_pred EeccCCcchhhHhhcCCCCcceEeecccCCcccccccCCCCCCccEEEecCCCCceecCCCCCCCCCcceEeeccccccc
Q 035579 525 VYKCSKLESIAERLDNNTSLETIGINFCENLKILPSGLHNLRQLREITIQRCGNLVSFPEGGLPCAKLSELRIFQCERLE 604 (814)
Q Consensus 525 l~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~~~~l~ 604 (814)
+++|.... ++ .+..+++|++|++++|.+.+..| ++.+++|++|++++| .+..++ .+..+++|++|++++|. +.
T Consensus 184 l~~n~l~~-~~-~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n-~l~~~~-~l~~l~~L~~L~l~~n~-l~ 256 (466)
T 1o6v_A 184 ISSNKVSD-IS-VLAKLTNLESLIATNNQISDITP--LGILTNLDELSLNGN-QLKDIG-TLASLTNLTDLDLANNQ-IS 256 (466)
T ss_dssp CCSSCCCC-CG-GGGGCTTCSEEECCSSCCCCCGG--GGGCTTCCEEECCSS-CCCCCG-GGGGCTTCSEEECCSSC-CC
T ss_pred CcCCcCCC-Ch-hhccCCCCCEEEecCCccccccc--ccccCCCCEEECCCC-Ccccch-hhhcCCCCCEEECCCCc-cc
Confidence 99987544 33 48899999999999999887755 778999999999998 455554 56778999999999994 45
Q ss_pred cccccccCCCCcceEEecC-ccCccccCCCCCceeEEEecCCcchhhhhhhcccccCCCCcccEEEEecCCCCCccCCcc
Q 035579 605 ALPKGLHNLTSLQELTIGG-ALPSLEEDGLPTNLHSLDIRGNMEIWKSMIERGRGFHRFSSLRHLTIDGCDDDMVSFPPE 683 (814)
Q Consensus 605 ~lp~~~~~l~~L~~L~l~~-~~~~l~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~l~~i~~~ 683 (814)
.++. +..+++|+.|++++ .+..++....+++|++|++++|...... .+..+++|+.|++++| .+..++.
T Consensus 257 ~~~~-~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~L~~n~l~~~~------~~~~l~~L~~L~L~~n--~l~~~~~- 326 (466)
T 1o6v_A 257 NLAP-LSGLTKLTELKLGANQISNISPLAGLTALTNLELNENQLEDIS------PISNLKNLTYLTLYFN--NISDISP- 326 (466)
T ss_dssp CCGG-GTTCTTCSEEECCSSCCCCCGGGTTCTTCSEEECCSSCCSCCG------GGGGCTTCSEEECCSS--CCSCCGG-
T ss_pred cchh-hhcCCCCCEEECCCCccCccccccCCCccCeEEcCCCcccCch------hhcCCCCCCEEECcCC--cCCCchh-
Confidence 5543 88999999999999 7777776777899999999999876643 3678999999999997 5555554
Q ss_pred ccccCCCCCCCCCcceEEeccCCCCcccccccccCCCCCeEEecCCCCCCccCCCCCcCCccEEeecCCch
Q 035579 684 DKRLGTALPLPASLTDLEIGRFPNLERLSSSIVDLQNLTELCLRDCPKLKYFPEKGLPSSLLRLSILSCPL 754 (814)
Q Consensus 684 ~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~l~~L~~L~l~~c~~l~~lp~~~l~~~L~~L~i~~c~~ 754 (814)
. ..+++|++|++++ +.++.++ .+..+++|+.|++++| .+..+++..-+++|+.|++++|+.
T Consensus 327 ~-------~~l~~L~~L~l~~-n~l~~~~-~l~~l~~L~~L~l~~n-~l~~~~~~~~l~~L~~L~l~~n~~ 387 (466)
T 1o6v_A 327 V-------SSLTKLQRLFFYN-NKVSDVS-SLANLTNINWLSAGHN-QISDLTPLANLTRITQLGLNDQAW 387 (466)
T ss_dssp G-------GGCTTCCEEECCS-SCCCCCG-GGTTCTTCCEEECCSS-CCCBCGGGTTCTTCCEEECCCEEE
T ss_pred h-------ccCccCCEeECCC-CccCCch-hhccCCCCCEEeCCCC-ccCccchhhcCCCCCEEeccCCcc
Confidence 2 3689999999999 5788886 7889999999999997 566665534478999999999863
No 30
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.94 E-value=1.9e-25 Score=247.51 Aligned_cols=130 Identities=13% Similarity=0.083 Sum_probs=73.7
Q ss_pred CCCCeEEEecCCCcccchhhHHHHHHHHhhhccccccEEEeeccCCcccc-ccccCCCCCcceEeeecCCCCcccC-CCC
Q 035579 332 CSLRRLTIRSCPKLQSLVAEEEKDQQQQLCELSCRLEYLILSCCEGLVKL-PQSSLSLCSLREIGIYKCSSLVSFP-EVA 409 (814)
Q Consensus 332 ~~L~~L~l~~~~~l~~l~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~-~~~~~~l~~L~~L~L~~~~~l~~~~-~~~ 409 (814)
++|++|+++++ .++.+.+.. +..+ ++|++|++++|.+.+.+ +..+..+++|++|++++|......| .+.
T Consensus 30 ~~l~~L~Ls~n-~i~~~~~~~----~~~l----~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~ 100 (455)
T 3v47_A 30 AHVNYVDLSLN-SIAELNETS----FSRL----QDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQFLQLETGAFN 100 (455)
T ss_dssp TTCCEEECCSS-CCCEECTTT----TSSC----TTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTTCTTCEECTTTTT
T ss_pred CccCEEEecCC-ccCcCChhH----hccC----ccccEEECcCCcccceECcccccccccCCEEeCCCCccCccChhhcc
Confidence 56777777774 455553322 2233 67777777777665444 3456777777777777754333323 355
Q ss_pred CCCCCcEEEecccCCCCCCchh-hhcCCCCCccEEEEecCCCCccccc--ccCcCccceeeeccc
Q 035579 410 LPSKLEKIHIGACDALKSLPEA-WMCDTNSSLEILYIEGCRSLTYIAA--VQLPSSLKNLQIHGC 471 (814)
Q Consensus 410 ~~~~L~~L~l~~~~~l~~~~~~-~~~~~l~~L~~L~l~~~~~l~~~~~--~~~~~~L~~L~l~~~ 471 (814)
.+++|++|++++|...+..+.. .+ ..+++|++|++++|......+. ...+++|++|+++++
T Consensus 101 ~l~~L~~L~L~~n~l~~~~~~~~~~-~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n 164 (455)
T 3v47_A 101 GLANLEVLTLTQCNLDGAVLSGNFF-KPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFN 164 (455)
T ss_dssp TCTTCCEEECTTSCCBTHHHHSSTT-TTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTC
T ss_pred CcccCCEEeCCCCCCCccccCcccc-cCcccCCEEECCCCccCccCcccccCCCCcccEEeCCCC
Confidence 5777777777777632223332 11 5677777777777542222222 223455666666655
No 31
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.93 E-value=5.5e-25 Score=234.26 Aligned_cols=303 Identities=17% Similarity=0.206 Sum_probs=169.3
Q ss_pred hcCCCCCeEEEecCCCcccchhhHHHHHHHHhhhccccccEEEeeccCCccccccccCCCCCcceEeeecCCCCcccCCC
Q 035579 329 QDICSLRRLTIRSCPKLQSLVAEEEKDQQQQLCELSCRLEYLILSCCEGLVKLPQSSLSLCSLREIGIYKCSSLVSFPEV 408 (814)
Q Consensus 329 ~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~L~~~~~l~~~~~~ 408 (814)
..+++|++|+++++ .+..++. +..+ ++|++|++++|.+. .++. +..+++|++|++++| .++.++.+
T Consensus 41 ~~l~~L~~L~l~~~-~i~~~~~------~~~~----~~L~~L~l~~n~i~-~~~~-~~~l~~L~~L~L~~n-~i~~~~~~ 106 (347)
T 4fmz_A 41 EELESITKLVVAGE-KVASIQG------IEYL----TNLEYLNLNGNQIT-DISP-LSNLVKLTNLYIGTN-KITDISAL 106 (347)
T ss_dssp HHHTTCSEEECCSS-CCCCCTT------GGGC----TTCCEEECCSSCCC-CCGG-GTTCTTCCEEECCSS-CCCCCGGG
T ss_pred hhcccccEEEEeCC-ccccchh------hhhc----CCccEEEccCCccc-cchh-hhcCCcCCEEEccCC-cccCchHH
Confidence 35566666666664 3444432 2222 66666666666543 3333 566666666666664 44555555
Q ss_pred CCCCCCcEEEecccCCCCCCchhhhcCCCCCccEEEEecCCCCcccccccCcCccceeeeccccCCcccccccCCCCCCC
Q 035579 409 ALPSKLEKIHIGACDALKSLPEAWMCDTNSSLEILYIEGCRSLTYIAAVQLPSSLKNLQIHGCYNIKTLTVEEGIPSSSS 488 (814)
Q Consensus 409 ~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~ 488 (814)
..+++|++|++++|. +..++. + ..+++|++|++++|.....++....++
T Consensus 107 ~~l~~L~~L~l~~n~-i~~~~~-~--~~l~~L~~L~l~~n~~~~~~~~~~~l~--------------------------- 155 (347)
T 4fmz_A 107 QNLTNLRELYLNEDN-ISDISP-L--ANLTKMYSLNLGANHNLSDLSPLSNMT--------------------------- 155 (347)
T ss_dssp TTCTTCSEEECTTSC-CCCCGG-G--TTCTTCCEEECTTCTTCCCCGGGTTCT---------------------------
T ss_pred cCCCcCCEEECcCCc-ccCchh-h--ccCCceeEEECCCCCCcccccchhhCC---------------------------
Confidence 556666666666665 444444 2 556666666666654444333222222
Q ss_pred CCCCCCCccEEeecCCCCcccccccCCCcccccEEEEeccCCcchhhHhhcCCCCcceEeecccCCcccccccCCCCCCc
Q 035579 489 SRYTSSILEHLSIVGCPSLTCIFSKNELPATLESLSVYKCSKLESIAERLDNNTSLETIGINFCENLKILPSGLHNLRQL 568 (814)
Q Consensus 489 ~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L 568 (814)
+|+.|++++|......+ +..+++|+.|++++|.+....+ +..+++|
T Consensus 156 ------------------------------~L~~L~l~~~~~~~~~~--~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L 201 (347)
T 4fmz_A 156 ------------------------------GLNYLTVTESKVKDVTP--IANLTDLYSLSLNYNQIEDISP--LASLTSL 201 (347)
T ss_dssp ------------------------------TCCEEECCSSCCCCCGG--GGGCTTCSEEECTTSCCCCCGG--GGGCTTC
T ss_pred ------------------------------CCcEEEecCCCcCCchh--hccCCCCCEEEccCCccccccc--ccCCCcc
Confidence 33333333333222221 4455555555555555443322 4555566
Q ss_pred cEEEecCCCCceecCCCCCCCCCcceEeeccccccccccccccCCCCcceEEecC-ccCccccCCCCCceeEEEecCCcc
Q 035579 569 REITIQRCGNLVSFPEGGLPCAKLSELRIFQCERLEALPKGLHNLTSLQELTIGG-ALPSLEEDGLPTNLHSLDIRGNME 647 (814)
Q Consensus 569 ~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~~~~l~~lp~~~~~l~~L~~L~l~~-~~~~l~~~~~~~~L~~L~l~~n~~ 647 (814)
+.+++++| .+..++. +..+++|++|++++| .+..++. +..+++|++|++++ .+..++....+++|++|++++|..
T Consensus 202 ~~L~l~~n-~l~~~~~-~~~~~~L~~L~l~~n-~l~~~~~-~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~~n~l 277 (347)
T 4fmz_A 202 HYFTAYVN-QITDITP-VANMTRLNSLKIGNN-KITDLSP-LANLSQLTWLEIGTNQISDINAVKDLTKLKMLNVGSNQI 277 (347)
T ss_dssp CEEECCSS-CCCCCGG-GGGCTTCCEEECCSS-CCCCCGG-GTTCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSCC
T ss_pred ceeecccC-CCCCCch-hhcCCcCCEEEccCC-ccCCCcc-hhcCCCCCEEECCCCccCCChhHhcCCCcCEEEccCCcc
Confidence 66666555 3333332 444556666666665 3333433 55566666666666 455444455567777777777765
Q ss_pred hhhhhhhcccccCCCCcccEEEEecCCCCCccCCccccccCCCCCCCCCcceEEeccCCCCcccccccccCCCCCeEEec
Q 035579 648 IWKSMIERGRGFHRFSSLRHLTIDGCDDDMVSFPPEDKRLGTALPLPASLTDLEIGRFPNLERLSSSIVDLQNLTELCLR 727 (814)
Q Consensus 648 ~~~~~~~~~~~l~~l~~L~~L~l~~~~~~l~~i~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~l~~L~~L~l~ 727 (814)
... ..+..+++|++|++++| .+...+.... ..+++|++|++++ +.++.+++ +..+++|++|+++
T Consensus 278 ~~~------~~~~~l~~L~~L~L~~n--~l~~~~~~~l------~~l~~L~~L~L~~-n~l~~~~~-~~~l~~L~~L~l~ 341 (347)
T 4fmz_A 278 SDI------SVLNNLSQLNSLFLNNN--QLGNEDMEVI------GGLTNLTTLFLSQ-NHITDIRP-LASLSKMDSADFA 341 (347)
T ss_dssp CCC------GGGGGCTTCSEEECCSS--CCCGGGHHHH------HTCTTCSEEECCS-SSCCCCGG-GGGCTTCSEESSS
T ss_pred CCC------hhhcCCCCCCEEECcCC--cCCCcChhHh------hccccCCEEEccC-CccccccC-hhhhhccceeehh
Confidence 543 23567778888888876 4444433321 3578888888888 45777764 7788888888888
Q ss_pred CCC
Q 035579 728 DCP 730 (814)
Q Consensus 728 ~c~ 730 (814)
+|+
T Consensus 342 ~N~ 344 (347)
T 4fmz_A 342 NQV 344 (347)
T ss_dssp CC-
T ss_pred hhc
Confidence 863
No 32
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.93 E-value=8.7e-25 Score=243.48 Aligned_cols=294 Identities=18% Similarity=0.161 Sum_probs=196.1
Q ss_pred ccccEEEeeccCCccccccccCCCCCcceEeeecCCCCccc-C-CCCCCCCCcEEEecccCCCCCCchhhhcCCCCCccE
Q 035579 365 CRLEYLILSCCEGLVKLPQSSLSLCSLREIGIYKCSSLVSF-P-EVALPSKLEKIHIGACDALKSLPEAWMCDTNSSLEI 442 (814)
Q Consensus 365 ~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~L~~~~~l~~~-~-~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~ 442 (814)
++++.|++++|.+.+..+..+..+++|++|+|++|. ++.+ + .+..+++|++|++++|. +..++...+ ..+++|++
T Consensus 32 ~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~-i~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~-~~l~~L~~ 108 (477)
T 2id5_A 32 TETRLLDLGKNRIKTLNQDEFASFPHLEELELNENI-VSAVEPGAFNNLFNLRTLGLRSNR-LKLIPLGVF-TGLSNLTK 108 (477)
T ss_dssp TTCSEEECCSSCCCEECTTTTTTCTTCCEEECTTSC-CCEECTTTTTTCTTCCEEECCSSC-CCSCCTTSS-TTCTTCCE
T ss_pred CCCcEEECCCCccceECHhHccCCCCCCEEECCCCc-cCEeChhhhhCCccCCEEECCCCc-CCccCcccc-cCCCCCCE
Confidence 566666666666555555566666666666666643 3333 2 24456666666666665 555554433 55666666
Q ss_pred EEEecCCCCcccccc--cCcCccceeeeccccCCcccccccCCCCCCCCCCCCCCccEEeecCCCCcccccccCCCcccc
Q 035579 443 LYIEGCRSLTYIAAV--QLPSSLKNLQIHGCYNIKTLTVEEGIPSSSSSRYTSSILEHLSIVGCPSLTCIFSKNELPATL 520 (814)
Q Consensus 443 L~l~~~~~l~~~~~~--~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~L 520 (814)
|++++|. +..+... ..+++ |++|+++++............+++|
T Consensus 109 L~Ls~n~-i~~~~~~~~~~l~~---------------------------------L~~L~l~~n~l~~~~~~~~~~l~~L 154 (477)
T 2id5_A 109 LDISENK-IVILLDYMFQDLYN---------------------------------LKSLEVGDNDLVYISHRAFSGLNSL 154 (477)
T ss_dssp EECTTSC-CCEECTTTTTTCTT---------------------------------CCEEEECCTTCCEECTTSSTTCTTC
T ss_pred EECCCCc-cccCChhHcccccc---------------------------------CCEEECCCCccceeChhhccCCCCC
Confidence 6666643 2221111 11222 3333333322111101112233578
Q ss_pred cEEEEeccCCcchhhHhhcCCCCcceEeecccCCcccccccCCCCCCccEEEecCCCCceecCCCCCCCCCcceEeeccc
Q 035579 521 ESLSVYKCSKLESIAERLDNNTSLETIGINFCENLKILPSGLHNLRQLREITIQRCGNLVSFPEGGLPCAKLSELRIFQC 600 (814)
Q Consensus 521 ~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~~ 600 (814)
+.|++++|......+..+..+++|+.|++++|.+.+..+..+..+++|++|++++|..+..+|.......+|++|++++|
T Consensus 155 ~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n 234 (477)
T 2id5_A 155 EQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHC 234 (477)
T ss_dssp CEEEEESCCCSSCCHHHHTTCTTCCEEEEESCCCCEECTTCSCSCTTCCEEEEECCTTCCEECTTTTTTCCCSEEEEESS
T ss_pred CEEECCCCcCcccChhHhcccCCCcEEeCCCCcCcEeChhhcccCcccceeeCCCCccccccCcccccCccccEEECcCC
Confidence 88888888776666677899999999999999998887788899999999999999888888887777779999999998
Q ss_pred ccccccc-ccccCCCCcceEEecC-ccCcccc--CCCCCceeEEEecCCcchhhhhhhcccccCCCCcccEEEEecCCCC
Q 035579 601 ERLEALP-KGLHNLTSLQELTIGG-ALPSLEE--DGLPTNLHSLDIRGNMEIWKSMIERGRGFHRFSSLRHLTIDGCDDD 676 (814)
Q Consensus 601 ~~l~~lp-~~~~~l~~L~~L~l~~-~~~~l~~--~~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~ 676 (814)
.++.+| ..+..+++|+.|++++ .+..++. ...+++|++|++++|.+....+ ..+..+++|+.|++++| .
T Consensus 235 -~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~----~~~~~l~~L~~L~L~~N--~ 307 (477)
T 2id5_A 235 -NLTAVPYLAVRHLVYLRFLNLSYNPISTIEGSMLHELLRLQEIQLVGGQLAVVEP----YAFRGLNYLRVLNVSGN--Q 307 (477)
T ss_dssp -CCCSCCHHHHTTCTTCCEEECCSSCCCEECTTSCTTCTTCCEEECCSSCCSEECT----TTBTTCTTCCEEECCSS--C
T ss_pred -cccccCHHHhcCccccCeeECCCCcCCccChhhccccccCCEEECCCCccceECH----HHhcCcccCCEEECCCC--c
Confidence 566666 4678888999999988 6666554 3456788888888887766544 56778888888888887 6
Q ss_pred CccCCccccccCCCCCCCCCcceEEeccCCCCc
Q 035579 677 MVSFPPEDKRLGTALPLPASLTDLEIGRFPNLE 709 (814)
Q Consensus 677 l~~i~~~~~~~~~~~~~~~~L~~L~l~~~~~l~ 709 (814)
+..++...+ ..+++|++|++++ |.+.
T Consensus 308 l~~~~~~~~------~~l~~L~~L~l~~-N~l~ 333 (477)
T 2id5_A 308 LTTLEESVF------HSVGNLETLILDS-NPLA 333 (477)
T ss_dssp CSCCCGGGB------SCGGGCCEEECCS-SCEE
T ss_pred CceeCHhHc------CCCcccCEEEccC-CCcc
Confidence 777777653 4567888888888 4444
No 33
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.93 E-value=9e-25 Score=232.63 Aligned_cols=299 Identities=16% Similarity=0.180 Sum_probs=220.7
Q ss_pred ccccEEEeeccCCccccccccCCCCCcceEeeecCCCCcccCCCCCCCCCcEEEecccCCCCCCchhhhcCCCCCccEEE
Q 035579 365 CRLEYLILSCCEGLVKLPQSSLSLCSLREIGIYKCSSLVSFPEVALPSKLEKIHIGACDALKSLPEAWMCDTNSSLEILY 444 (814)
Q Consensus 365 ~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~L~~~~~l~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~ 444 (814)
++|++|++++|.+ ..++ .+..+++|++|++++| .++.++.+..+++|++|++++|. +..++. + ..+++|++|+
T Consensus 44 ~~L~~L~l~~~~i-~~~~-~~~~~~~L~~L~l~~n-~i~~~~~~~~l~~L~~L~L~~n~-i~~~~~-~--~~l~~L~~L~ 116 (347)
T 4fmz_A 44 ESITKLVVAGEKV-ASIQ-GIEYLTNLEYLNLNGN-QITDISPLSNLVKLTNLYIGTNK-ITDISA-L--QNLTNLRELY 116 (347)
T ss_dssp TTCSEEECCSSCC-CCCT-TGGGCTTCCEEECCSS-CCCCCGGGTTCTTCCEEECCSSC-CCCCGG-G--TTCTTCSEEE
T ss_pred ccccEEEEeCCcc-ccch-hhhhcCCccEEEccCC-ccccchhhhcCCcCCEEEccCCc-ccCchH-H--cCCCcCCEEE
Confidence 6777777777765 3344 3666777777777775 45555556667777777777775 555543 2 6667777777
Q ss_pred EecCCCCcccccccCcCccceeeeccccCCcccccccCCCCCCCCCCCCCCccEEeecCCCCcccccccCCCcccccEEE
Q 035579 445 IEGCRSLTYIAAVQLPSSLKNLQIHGCYNIKTLTVEEGIPSSSSSRYTSSILEHLSIVGCPSLTCIFSKNELPATLESLS 524 (814)
Q Consensus 445 l~~~~~l~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~ 524 (814)
+++|. ++.++. ....++|+.|+
T Consensus 117 l~~n~-i~~~~~---------------------------------------------------------~~~l~~L~~L~ 138 (347)
T 4fmz_A 117 LNEDN-ISDISP---------------------------------------------------------LANLTKMYSLN 138 (347)
T ss_dssp CTTSC-CCCCGG---------------------------------------------------------GTTCTTCCEEE
T ss_pred CcCCc-ccCchh---------------------------------------------------------hccCCceeEEE
Confidence 76653 221111 11123455666
Q ss_pred EeccCCcchhhHhhcCCCCcceEeecccCCcccccccCCCCCCccEEEecCCCCceecCCCCCCCCCcceEeeccccccc
Q 035579 525 VYKCSKLESIAERLDNNTSLETIGINFCENLKILPSGLHNLRQLREITIQRCGNLVSFPEGGLPCAKLSELRIFQCERLE 604 (814)
Q Consensus 525 l~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~~~~l~ 604 (814)
+++|.....++. +..+++|++|++++|.+....+ +..+++|++|++++| .+..++. +..+++|+.+++++| .+.
T Consensus 139 l~~n~~~~~~~~-~~~l~~L~~L~l~~~~~~~~~~--~~~l~~L~~L~l~~n-~l~~~~~-~~~l~~L~~L~l~~n-~l~ 212 (347)
T 4fmz_A 139 LGANHNLSDLSP-LSNMTGLNYLTVTESKVKDVTP--IANLTDLYSLSLNYN-QIEDISP-LASLTSLHYFTAYVN-QIT 212 (347)
T ss_dssp CTTCTTCCCCGG-GTTCTTCCEEECCSSCCCCCGG--GGGCTTCSEEECTTS-CCCCCGG-GGGCTTCCEEECCSS-CCC
T ss_pred CCCCCCcccccc-hhhCCCCcEEEecCCCcCCchh--hccCCCCCEEEccCC-ccccccc-ccCCCccceeecccC-CCC
Confidence 666555554443 8899999999999998876644 788999999999998 5566664 777899999999999 455
Q ss_pred cccccccCCCCcceEEecC-ccCccccCCCCCceeEEEecCCcchhhhhhhcccccCCCCcccEEEEecCCCCCccCCcc
Q 035579 605 ALPKGLHNLTSLQELTIGG-ALPSLEEDGLPTNLHSLDIRGNMEIWKSMIERGRGFHRFSSLRHLTIDGCDDDMVSFPPE 683 (814)
Q Consensus 605 ~lp~~~~~l~~L~~L~l~~-~~~~l~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~l~~i~~~ 683 (814)
.++. +..+++|+.|++++ .+..++....+++|++|++++|..... ..+..+++|++|++++| .+..++.-
T Consensus 213 ~~~~-~~~~~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~~n~l~~~------~~~~~l~~L~~L~l~~n--~l~~~~~~ 283 (347)
T 4fmz_A 213 DITP-VANMTRLNSLKIGNNKITDLSPLANLSQLTWLEIGTNQISDI------NAVKDLTKLKMLNVGSN--QISDISVL 283 (347)
T ss_dssp CCGG-GGGCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCCC------GGGTTCTTCCEEECCSS--CCCCCGGG
T ss_pred CCch-hhcCCcCCEEEccCCccCCCcchhcCCCCCEEECCCCccCCC------hhHhcCCCcCEEEccCC--ccCCChhh
Confidence 5543 78999999999999 777777777789999999999987664 35788999999999997 66666432
Q ss_pred ccccCCCCCCCCCcceEEeccCCCCcccc-cccccCCCCCeEEecCCCCCCccCCCCCcCCccEEeecCCc
Q 035579 684 DKRLGTALPLPASLTDLEIGRFPNLERLS-SSIVDLQNLTELCLRDCPKLKYFPEKGLPSSLLRLSILSCP 753 (814)
Q Consensus 684 ~~~~~~~~~~~~~L~~L~l~~~~~l~~l~-~~~~~l~~L~~L~l~~c~~l~~lp~~~l~~~L~~L~i~~c~ 753 (814)
..+++|++|++++| .++..+ ..+..+++|++|++++| .++.++....+++|++|++++|+
T Consensus 284 --------~~l~~L~~L~L~~n-~l~~~~~~~l~~l~~L~~L~L~~n-~l~~~~~~~~l~~L~~L~l~~N~ 344 (347)
T 4fmz_A 284 --------NNLSQLNSLFLNNN-QLGNEDMEVIGGLTNLTTLFLSQN-HITDIRPLASLSKMDSADFANQV 344 (347)
T ss_dssp --------GGCTTCSEEECCSS-CCCGGGHHHHHTCTTCSEEECCSS-SCCCCGGGGGCTTCSEESSSCC-
T ss_pred --------cCCCCCCEEECcCC-cCCCcChhHhhccccCCEEEccCC-ccccccChhhhhccceeehhhhc
Confidence 46899999999995 566554 47889999999999997 47777663347899999999986
No 34
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.92 E-value=5.7e-25 Score=241.34 Aligned_cols=101 Identities=17% Similarity=0.180 Sum_probs=55.2
Q ss_pred CCCCcCcccEEEeeeCCCCCCccccCCCCCcccEEEEecCCCCCCCCCCCCCCccceeeecCCcCceeeCccccCCCCCC
Q 035579 114 LKPHKNLEQFGICGYGGTKFPTWLGDCSFSNLVTLKFKDCGVCTTLPSVGQLSSLKHLTVRGMSRVKSLGSEFYGNDSPI 193 (814)
Q Consensus 114 l~~~~~L~~L~l~~~~~~~~p~~~~~~~l~~L~~L~L~~~~~~~~l~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~ 193 (814)
+..+++|+.|+++++.+..+|. +. .+++|++|++++|.+.. +| ++.+++|++|++++|. ++.++ + .
T Consensus 38 ~~~l~~L~~L~Ls~n~l~~~~~-l~--~l~~L~~L~Ls~n~l~~-~~-~~~l~~L~~L~Ls~N~-l~~~~--~------~ 103 (457)
T 3bz5_A 38 EEQLATLTSLDCHNSSITDMTG-IE--KLTGLTKLICTSNNITT-LD-LSQNTNLTYLACDSNK-LTNLD--V------T 103 (457)
T ss_dssp HHHHTTCCEEECCSSCCCCCTT-GG--GCTTCSEEECCSSCCSC-CC-CTTCTTCSEEECCSSC-CSCCC--C------T
T ss_pred hhHcCCCCEEEccCCCcccChh-hc--ccCCCCEEEccCCcCCe-Ec-cccCCCCCEEECcCCC-Cceee--c------C
Confidence 3345667777777776666652 33 56777777777776333 33 6666777777776642 33321 1 1
Q ss_pred CCCCcceeeccccccccccccCCCCCCcccCCcccEEEEccCC
Q 035579 194 PFPCLETLRFENMQEWEDWIPLRSDQGVEGFPKLRELHIISCS 236 (814)
Q Consensus 194 ~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~l~~L~~L~l~~c~ 236 (814)
.+++|++|++++ +.++.+. ++.+++|++|++++|.
T Consensus 104 ~l~~L~~L~L~~-N~l~~l~-------~~~l~~L~~L~l~~N~ 138 (457)
T 3bz5_A 104 PLTKLTYLNCDT-NKLTKLD-------VSQNPLLTYLNCARNT 138 (457)
T ss_dssp TCTTCCEEECCS-SCCSCCC-------CTTCTTCCEEECTTSC
T ss_pred CCCcCCEEECCC-CcCCeec-------CCCCCcCCEEECCCCc
Confidence 155555555555 2333321 3455555555555554
No 35
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.92 E-value=1.9e-24 Score=233.89 Aligned_cols=307 Identities=14% Similarity=0.092 Sum_probs=194.0
Q ss_pred cCCCCCeEEEecCCCcccchhhHHHHHHHHhhhccccccEEEeeccCCccccccccCCCCCcceEeeecCCCCcccC-C-
Q 035579 330 DICSLRRLTIRSCPKLQSLVAEEEKDQQQQLCELSCRLEYLILSCCEGLVKLPQSSLSLCSLREIGIYKCSSLVSFP-E- 407 (814)
Q Consensus 330 ~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~L~~~~~l~~~~-~- 407 (814)
.+++++.|+++++ .++.++... +..+ ++|++|++++|.+....+..+..+++|++|++++|. ++.++ .
T Consensus 43 ~l~~l~~l~l~~~-~l~~l~~~~----~~~l----~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~ 112 (390)
T 3o6n_A 43 TLNNQKIVTFKNS-TMRKLPAAL----LDSF----RQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNA-IRYLPPHV 112 (390)
T ss_dssp GGCCCSEEEEESC-EESEECTHH----HHHC----CCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSC-CCCCCTTT
T ss_pred ccCCceEEEecCC-chhhCChhH----hccc----ccCcEEECCCCcccccChhhccCCCCcCEEECCCCC-CCcCCHHH
Confidence 5678888888885 577776643 2333 788888888887655555577778888888888754 44443 2
Q ss_pred CCCCCCCcEEEecccCCCCCCchhhhcCCCCCccEEEEecCCCCcccccccCcCccceeeeccccCCcccccccCCCCCC
Q 035579 408 VALPSKLEKIHIGACDALKSLPEAWMCDTNSSLEILYIEGCRSLTYIAAVQLPSSLKNLQIHGCYNIKTLTVEEGIPSSS 487 (814)
Q Consensus 408 ~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~ 487 (814)
+..+++|++|++++|. +..+|..++ ..+++|++|++++|. ++.++. ..
T Consensus 113 ~~~l~~L~~L~L~~n~-l~~l~~~~~-~~l~~L~~L~L~~n~-l~~~~~----------------------------~~- 160 (390)
T 3o6n_A 113 FQNVPLLTVLVLERND-LSSLPRGIF-HNTPKLTTLSMSNNN-LERIED----------------------------DT- 160 (390)
T ss_dssp TTTCTTCCEEECCSSC-CCCCCTTTT-TTCTTCCEEECCSSC-CCBCCT----------------------------TT-
T ss_pred hcCCCCCCEEECCCCc-cCcCCHHHh-cCCCCCcEEECCCCc-cCccCh----------------------------hh-
Confidence 4557777777777776 556665543 566777777777653 111110 00
Q ss_pred CCCCCCCCccEEeecCCCCcccccccCCCcccccEEEEeccCCcchhhHhhcCCCCcceEeecccCCcccccccCCCCCC
Q 035579 488 SSRYTSSILEHLSIVGCPSLTCIFSKNELPATLESLSVYKCSKLESIAERLDNNTSLETIGINFCENLKILPSGLHNLRQ 567 (814)
Q Consensus 488 ~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~ 567 (814)
....++|++|++++|..... .+..+++|+.|++++|.+.+. ...++
T Consensus 161 --------------------------~~~l~~L~~L~l~~n~l~~~---~~~~l~~L~~L~l~~n~l~~~-----~~~~~ 206 (390)
T 3o6n_A 161 --------------------------FQATTSLQNLQLSSNRLTHV---DLSLIPSLFHANVSYNLLSTL-----AIPIA 206 (390)
T ss_dssp --------------------------TSSCTTCCEEECCSSCCSBC---CGGGCTTCSEEECCSSCCSEE-----ECCSS
T ss_pred --------------------------ccCCCCCCEEECCCCcCCcc---ccccccccceeeccccccccc-----CCCCc
Confidence 00012344444444332221 134455566666665544321 12234
Q ss_pred ccEEEecCCCCceecCCCCCCCCCcceEeeccccccccccccccCCCCcceEEecCccCccccCCCCCceeEEEecCCcc
Q 035579 568 LREITIQRCGNLVSFPEGGLPCAKLSELRIFQCERLEALPKGLHNLTSLQELTIGGALPSLEEDGLPTNLHSLDIRGNME 647 (814)
Q Consensus 568 L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~~~~l~~lp~~~~~l~~L~~L~l~~~~~~l~~~~~~~~L~~L~l~~n~~ 647 (814)
|++|++++| .+..+|... .++|+.|++++| .+...+....+++|++|++++|.+
T Consensus 207 L~~L~l~~n-~l~~~~~~~--~~~L~~L~l~~n-----------------------~l~~~~~l~~l~~L~~L~Ls~n~l 260 (390)
T 3o6n_A 207 VEELDASHN-SINVVRGPV--NVELTILKLQHN-----------------------NLTDTAWLLNYPGLVEVDLSYNEL 260 (390)
T ss_dssp CSEEECCSS-CCCEEECCC--CSSCCEEECCSS-----------------------CCCCCGGGGGCTTCSEEECCSSCC
T ss_pred ceEEECCCC-eeeeccccc--cccccEEECCCC-----------------------CCcccHHHcCCCCccEEECCCCcC
Confidence 555555554 333333322 234555555554 333333334456777777777766
Q ss_pred hhhhhhhcccccCCCCcccEEEEecCCCCCccCCccccccCCCCCCCCCcceEEeccCCCCcccccccccCCCCCeEEec
Q 035579 648 IWKSMIERGRGFHRFSSLRHLTIDGCDDDMVSFPPEDKRLGTALPLPASLTDLEIGRFPNLERLSSSIVDLQNLTELCLR 727 (814)
Q Consensus 648 ~~~~~~~~~~~l~~l~~L~~L~l~~~~~~l~~i~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~l~~L~~L~l~ 727 (814)
....+ ..+..+++|++|++++| .+..+|... ..+++|++|++++ +.++.+|..+..+++|++|+++
T Consensus 261 ~~~~~----~~~~~l~~L~~L~L~~n--~l~~~~~~~-------~~l~~L~~L~L~~-n~l~~~~~~~~~l~~L~~L~L~ 326 (390)
T 3o6n_A 261 EKIMY----HPFVKMQRLERLYISNN--RLVALNLYG-------QPIPTLKVLDLSH-NHLLHVERNQPQFDRLENLYLD 326 (390)
T ss_dssp CEEES----GGGTTCSSCCEEECCSS--CCCEEECSS-------SCCTTCCEEECCS-SCCCCCGGGHHHHTTCSEEECC
T ss_pred CCcCh----hHccccccCCEEECCCC--cCcccCccc-------CCCCCCCEEECCC-CcceecCccccccCcCCEEECC
Confidence 55433 56888999999999997 677777655 4689999999999 6889999888899999999999
Q ss_pred CCCCCCccCCCCCcCCccEEeecCCch
Q 035579 728 DCPKLKYFPEKGLPSSLLRLSILSCPL 754 (814)
Q Consensus 728 ~c~~l~~lp~~~l~~~L~~L~i~~c~~ 754 (814)
+| .++.++. ..+++|++|++++||.
T Consensus 327 ~N-~i~~~~~-~~~~~L~~L~l~~N~~ 351 (390)
T 3o6n_A 327 HN-SIVTLKL-STHHTLKNLTLSHNDW 351 (390)
T ss_dssp SS-CCCCCCC-CTTCCCSEEECCSSCE
T ss_pred CC-ccceeCc-hhhccCCEEEcCCCCc
Confidence 95 6888874 3478999999999873
No 36
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.92 E-value=1.1e-23 Score=231.25 Aligned_cols=317 Identities=17% Similarity=0.163 Sum_probs=187.8
Q ss_pred hhcCCCCCeEEEecCCCcccchhhHHHHHHHHhhhccccccEEEeeccCCccccccccCCCCCcceEeeecCCCCcccCC
Q 035579 328 LQDICSLRRLTIRSCPKLQSLVAEEEKDQQQQLCELSCRLEYLILSCCEGLVKLPQSSLSLCSLREIGIYKCSSLVSFPE 407 (814)
Q Consensus 328 ~~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~L~~~~~l~~~~~ 407 (814)
+..+++|++|+++++ .++.++. +..+ ++|++|++++|.+.+ +| +..+++|++|++++|. ++.++
T Consensus 38 ~~~l~~L~~L~Ls~n-~l~~~~~------l~~l----~~L~~L~Ls~n~l~~-~~--~~~l~~L~~L~Ls~N~-l~~~~- 101 (457)
T 3bz5_A 38 EEQLATLTSLDCHNS-SITDMTG------IEKL----TGLTKLICTSNNITT-LD--LSQNTNLTYLACDSNK-LTNLD- 101 (457)
T ss_dssp HHHHTTCCEEECCSS-CCCCCTT------GGGC----TTCSEEECCSSCCSC-CC--CTTCTTCSEEECCSSC-CSCCC-
T ss_pred hhHcCCCCEEEccCC-CcccChh------hccc----CCCCEEEccCCcCCe-Ec--cccCCCCCEEECcCCC-Cceee-
Confidence 355677777777764 4555431 2333 677777777776543 33 6667777777777653 44443
Q ss_pred CCCCCCCcEEEecccCCCCCCchhhhcCCCCCccEEEEecCCCCcccccccCcCccceeeeccccCCcccccccCCCCCC
Q 035579 408 VALPSKLEKIHIGACDALKSLPEAWMCDTNSSLEILYIEGCRSLTYIAAVQLPSSLKNLQIHGCYNIKTLTVEEGIPSSS 487 (814)
Q Consensus 408 ~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~ 487 (814)
+..+++|++|++++|. +..++ + ..+++|++|++++|. ++.++ ...+
T Consensus 102 ~~~l~~L~~L~L~~N~-l~~l~--~--~~l~~L~~L~l~~N~-l~~l~-l~~l--------------------------- 147 (457)
T 3bz5_A 102 VTPLTKLTYLNCDTNK-LTKLD--V--SQNPLLTYLNCARNT-LTEID-VSHN--------------------------- 147 (457)
T ss_dssp CTTCTTCCEEECCSSC-CSCCC--C--TTCTTCCEEECTTSC-CSCCC-CTTC---------------------------
T ss_pred cCCCCcCCEEECCCCc-CCeec--C--CCCCcCCEEECCCCc-cceec-cccC---------------------------
Confidence 5566777777777776 44454 2 566777777777653 32222 1122
Q ss_pred CCCCCCCCccEEeecCCCCcccccccCCCcccccEEEEeccCCcchhhHhhcCCCCcceEeecccCCcccccccCCCCCC
Q 035579 488 SSRYTSSILEHLSIVGCPSLTCIFSKNELPATLESLSVYKCSKLESIAERLDNNTSLETIGINFCENLKILPSGLHNLRQ 567 (814)
Q Consensus 488 ~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~ 567 (814)
++|++|+++++..++.+ .....++|+.|++++|.... +| +..+++|+.|++++|.+.+. .+..+++
T Consensus 148 ------~~L~~L~l~~n~~~~~~--~~~~l~~L~~L~ls~n~l~~-l~--l~~l~~L~~L~l~~N~l~~~---~l~~l~~ 213 (457)
T 3bz5_A 148 ------TQLTELDCHLNKKITKL--DVTPQTQLTTLDCSFNKITE-LD--VSQNKLLNRLNCDTNNITKL---DLNQNIQ 213 (457)
T ss_dssp ------TTCCEEECTTCSCCCCC--CCTTCTTCCEEECCSSCCCC-CC--CTTCTTCCEEECCSSCCSCC---CCTTCTT
T ss_pred ------CcCCEEECCCCCccccc--ccccCCcCCEEECCCCccce-ec--cccCCCCCEEECcCCcCCee---ccccCCC
Confidence 33445555544433331 12233467777777765443 44 67777788888887777664 3667778
Q ss_pred ccEEEecCCCCceecCCCCCCCCCcceEeeccccccccccccccCCCCcceEEecCccCccccCCCCCceeEEEecCCcc
Q 035579 568 LREITIQRCGNLVSFPEGGLPCAKLSELRIFQCERLEALPKGLHNLTSLQELTIGGALPSLEEDGLPTNLHSLDIRGNME 647 (814)
Q Consensus 568 L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~~~~l~~lp~~~~~l~~L~~L~l~~~~~~l~~~~~~~~L~~L~l~~n~~ 647 (814)
|++|++++| .+..+| +..+++|+.|++++| .++.+| +..+++|+.|++++ .+|+.|++++|..
T Consensus 214 L~~L~Ls~N-~l~~ip--~~~l~~L~~L~l~~N-~l~~~~--~~~l~~L~~L~l~~-----------n~L~~L~l~~n~~ 276 (457)
T 3bz5_A 214 LTFLDCSSN-KLTEID--VTPLTQLTYFDCSVN-PLTELD--VSTLSKLTTLHCIQ-----------TDLLEIDLTHNTQ 276 (457)
T ss_dssp CSEEECCSS-CCSCCC--CTTCTTCSEEECCSS-CCSCCC--CTTCTTCCEEECTT-----------CCCSCCCCTTCTT
T ss_pred CCEEECcCC-cccccC--ccccCCCCEEEeeCC-cCCCcC--HHHCCCCCEEeccC-----------CCCCEEECCCCcc
Confidence 888888877 455565 566777888888877 444444 45667777776654 3455555565554
Q ss_pred hhhhhhhcccccCCCCcccEEEEecCCCCCccCCccccccCCC-CCCCCCcceEEeccCCCCcccccccccCCCCCeEEe
Q 035579 648 IWKSMIERGRGFHRFSSLRHLTIDGCDDDMVSFPPEDKRLGTA-LPLPASLTDLEIGRFPNLERLSSSIVDLQNLTELCL 726 (814)
Q Consensus 648 ~~~~~~~~~~~l~~l~~L~~L~l~~~~~~l~~i~~~~~~~~~~-~~~~~~L~~L~l~~~~~l~~l~~~~~~l~~L~~L~l 726 (814)
.... .+..+++|+.|++++| ..++.+|.....+... +...++|++|++++ |.++.++ +..+++|+.|++
T Consensus 277 ~~~~------~~~~l~~L~~L~Ls~n-~~l~~l~~~~~~L~~L~l~~~~~L~~L~L~~-N~l~~l~--l~~l~~L~~L~l 346 (457)
T 3bz5_A 277 LIYF------QAEGCRKIKELDVTHN-TQLYLLDCQAAGITELDLSQNPKLVYLYLNN-TELTELD--VSHNTKLKSLSC 346 (457)
T ss_dssp CCEE------ECTTCTTCCCCCCTTC-TTCCEEECTTCCCSCCCCTTCTTCCEEECTT-CCCSCCC--CTTCTTCSEEEC
T ss_pred CCcc------cccccccCCEEECCCC-cccceeccCCCcceEechhhcccCCEEECCC-Ccccccc--cccCCcCcEEEC
Confidence 3332 2345566666666664 2344444322111110 23457788888888 6777764 777888888888
Q ss_pred cCCCCCCccC
Q 035579 727 RDCPKLKYFP 736 (814)
Q Consensus 727 ~~c~~l~~lp 736 (814)
++ ++++.++
T Consensus 347 ~~-N~l~~l~ 355 (457)
T 3bz5_A 347 VN-AHIQDFS 355 (457)
T ss_dssp CS-SCCCBCT
T ss_pred CC-CCCCCcc
Confidence 87 4676654
No 37
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.92 E-value=1.4e-23 Score=227.11 Aligned_cols=310 Identities=18% Similarity=0.189 Sum_probs=240.3
Q ss_pred cceEEEcCCCCcchhccchhhhhhcCCCCCeEEEecCCCcccchhhHHHHHHHHhhhccccccEEEeeccCCcccccccc
Q 035579 306 LEELKINDMKEQTYMWKSHNELLQDICSLRRLTIRSCPKLQSLVAEEEKDQQQQLCELSCRLEYLILSCCEGLVKLPQSS 385 (814)
Q Consensus 306 L~~L~~~~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~~~~ 385 (814)
+..++.++++++.. ...+...+..+++|++|+++++ .+..++... +..+ ++|++|++++|.+.+..|..+
T Consensus 44 l~~l~~l~l~~~~l-~~l~~~~~~~l~~L~~L~L~~n-~i~~~~~~~----~~~l----~~L~~L~L~~n~l~~~~~~~~ 113 (390)
T 3o6n_A 44 LNNQKIVTFKNSTM-RKLPAALLDSFRQVELLNLNDL-QIEEIDTYA----FAYA----HTIQKLYMGFNAIRYLPPHVF 113 (390)
T ss_dssp GCCCSEEEEESCEE-SEECTHHHHHCCCCSEEECTTS-CCCEECTTT----TTTC----TTCCEEECCSSCCCCCCTTTT
T ss_pred cCCceEEEecCCch-hhCChhHhcccccCcEEECCCC-cccccChhh----ccCC----CCcCEEECCCCCCCcCCHHHh
Confidence 34455555555544 3456777899999999999996 577776543 3333 899999999999877777789
Q ss_pred CCCCCcceEeeecCCCCcccCC--CCCCCCCcEEEecccCCCCCCchhhhcCCCCCccEEEEecCCCCcccccccCcCcc
Q 035579 386 LSLCSLREIGIYKCSSLVSFPE--VALPSKLEKIHIGACDALKSLPEAWMCDTNSSLEILYIEGCRSLTYIAAVQLPSSL 463 (814)
Q Consensus 386 ~~l~~L~~L~L~~~~~l~~~~~--~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~L 463 (814)
..+++|++|++++| .++.+|. +..+++|++|++++|. +..++...+ ..+++|++|++++|. ++.++. ...++|
T Consensus 114 ~~l~~L~~L~L~~n-~l~~l~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~-~~l~~L~~L~l~~n~-l~~~~~-~~l~~L 188 (390)
T 3o6n_A 114 QNVPLLTVLVLERN-DLSSLPRGIFHNTPKLTTLSMSNNN-LERIEDDTF-QATTSLQNLQLSSNR-LTHVDL-SLIPSL 188 (390)
T ss_dssp TTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSC-CCBCCTTTT-SSCTTCCEEECCSSC-CSBCCG-GGCTTC
T ss_pred cCCCCCCEEECCCC-ccCcCCHHHhcCCCCCcEEECCCCc-cCccChhhc-cCCCCCCEEECCCCc-CCcccc-cccccc
Confidence 99999999999996 5667775 4669999999999998 555554433 889999999999964 555543 344669
Q ss_pred ceeeeccccCCcccccccCCCCCCCCCCCCCCccEEeecCCCCcccccccCCCcccccEEEEeccCCcchhhHhhcCCCC
Q 035579 464 KNLQIHGCYNIKTLTVEEGIPSSSSSRYTSSILEHLSIVGCPSLTCIFSKNELPATLESLSVYKCSKLESIAERLDNNTS 543 (814)
Q Consensus 464 ~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~ 543 (814)
+.++++++ .+..+ + ..+.|++|+++++..... + ...+++|+.|++++|..... ..+..+++
T Consensus 189 ~~L~l~~n-~l~~~------~-------~~~~L~~L~l~~n~l~~~--~-~~~~~~L~~L~l~~n~l~~~--~~l~~l~~ 249 (390)
T 3o6n_A 189 FHANVSYN-LLSTL------A-------IPIAVEELDASHNSINVV--R-GPVNVELTILKLQHNNLTDT--AWLLNYPG 249 (390)
T ss_dssp SEEECCSS-CCSEE------E-------CCSSCSEEECCSSCCCEE--E-CCCCSSCCEEECCSSCCCCC--GGGGGCTT
T ss_pred ceeecccc-ccccc------C-------CCCcceEEECCCCeeeec--c-ccccccccEEECCCCCCccc--HHHcCCCC
Confidence 99998876 23311 1 114699999998764332 2 23456899999999876654 46889999
Q ss_pred cceEeecccCCcccccccCCCCCCccEEEecCCCCceecCCCCCCCCCcceEeeccccccccccccccCCCCcceEEecC
Q 035579 544 LETIGINFCENLKILPSGLHNLRQLREITIQRCGNLVSFPEGGLPCAKLSELRIFQCERLEALPKGLHNLTSLQELTIGG 623 (814)
Q Consensus 544 L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~~~~l~~lp~~~~~l~~L~~L~l~~ 623 (814)
|+.|++++|.+.+..|..+..+++|++|++++| .+..+|..+..+++|++|++++| .+..+|..+..+++|+.|++++
T Consensus 250 L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~l~~L~~L~L~~ 327 (390)
T 3o6n_A 250 LVEVDLSYNELEKIMYHPFVKMQRLERLYISNN-RLVALNLYGQPIPTLKVLDLSHN-HLLHVERNQPQFDRLENLYLDH 327 (390)
T ss_dssp CSEEECCSSCCCEEESGGGTTCSSCCEEECCSS-CCCEEECSSSCCTTCCEEECCSS-CCCCCGGGHHHHTTCSEEECCS
T ss_pred ccEEECCCCcCCCcChhHccccccCCEEECCCC-cCcccCcccCCCCCCCEEECCCC-cceecCccccccCcCCEEECCC
Confidence 999999999999988899999999999999998 66778877788899999999999 6778888888899999999998
Q ss_pred -ccCccccCCCCCceeEEEecCCcchhhhh
Q 035579 624 -ALPSLEEDGLPTNLHSLDIRGNMEIWKSM 652 (814)
Q Consensus 624 -~~~~l~~~~~~~~L~~L~l~~n~~~~~~~ 652 (814)
.+..++ ...+++|++|++++|+......
T Consensus 328 N~i~~~~-~~~~~~L~~L~l~~N~~~~~~~ 356 (390)
T 3o6n_A 328 NSIVTLK-LSTHHTLKNLTLSHNDWDCNSL 356 (390)
T ss_dssp SCCCCCC-CCTTCCCSEEECCSSCEEHHHH
T ss_pred CccceeC-chhhccCCEEEcCCCCccchhH
Confidence 777665 4557889999999998766543
No 38
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.91 E-value=1.2e-23 Score=240.33 Aligned_cols=307 Identities=14% Similarity=0.094 Sum_probs=188.9
Q ss_pred cCCCCCeEEEecCCCcccchhhHHHHHHHHhhhccccccEEEeeccCCccccccccCCCCCcceEeeecCCCCcccCC--
Q 035579 330 DICSLRRLTIRSCPKLQSLVAEEEKDQQQQLCELSCRLEYLILSCCEGLVKLPQSSLSLCSLREIGIYKCSSLVSFPE-- 407 (814)
Q Consensus 330 ~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~L~~~~~l~~~~~-- 407 (814)
.+.+++.++++++ .+..++... +..+ ++|++|++++|.+.+..|..+..+++|++|+|++|. ++.+++
T Consensus 49 ~l~~l~~l~l~~~-~l~~lp~~~----~~~l----~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~ 118 (597)
T 3oja_B 49 TLNNQKIVTFKNS-TMRKLPAAL----LDSF----RQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNA-IRYLPPHV 118 (597)
T ss_dssp GGCCCSEEEESSC-EESEECTHH----HHHC----CCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSC-CCCCCTTT
T ss_pred cCCCceEEEeeCC-CCCCcCHHH----HccC----CCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCc-CCCCCHHH
Confidence 4677888888774 566666543 2333 778888888877666555677777777777777754 444432
Q ss_pred CCCCCCCcEEEecccCCCCCCchhhhcCCCCCccEEEEecCCCCcccccccCcCccceeeeccccCCcccccccCCCCCC
Q 035579 408 VALPSKLEKIHIGACDALKSLPEAWMCDTNSSLEILYIEGCRSLTYIAAVQLPSSLKNLQIHGCYNIKTLTVEEGIPSSS 487 (814)
Q Consensus 408 ~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~ 487 (814)
++.+++|++|++++|. +..+|..++ ..+++|++|++++|. ++.++ |..+
T Consensus 119 ~~~l~~L~~L~L~~n~-l~~l~~~~~-~~l~~L~~L~Ls~N~-l~~~~----------------------------~~~~ 167 (597)
T 3oja_B 119 FQNVPLLTVLVLERND-LSSLPRGIF-HNTPKLTTLSMSNNN-LERIE----------------------------DDTF 167 (597)
T ss_dssp TTTCTTCCEEECCSSC-CCCCCTTTT-TTCTTCCEEECCSSC-CCBCC----------------------------TTTT
T ss_pred HcCCCCCCEEEeeCCC-CCCCCHHHh-ccCCCCCEEEeeCCc-CCCCC----------------------------hhhh
Confidence 3557777777777776 555655543 566677777776653 11111 0000
Q ss_pred CCCCCCCCccEEeecCCCCcccccccCCCcccccEEEEeccCCcchhhHhhcCCCCcceEeecccCCcccccccCCCCCC
Q 035579 488 SSRYTSSILEHLSIVGCPSLTCIFSKNELPATLESLSVYKCSKLESIAERLDNNTSLETIGINFCENLKILPSGLHNLRQ 567 (814)
Q Consensus 488 ~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~ 567 (814)
..+++|+.|++++|.... ++ +..+++|+.|++++|.+.+. ...++
T Consensus 168 ---------------------------~~l~~L~~L~L~~N~l~~-~~--~~~l~~L~~L~l~~n~l~~l-----~~~~~ 212 (597)
T 3oja_B 168 ---------------------------QATTSLQNLQLSSNRLTH-VD--LSLIPSLFHANVSYNLLSTL-----AIPIA 212 (597)
T ss_dssp ---------------------------TTCTTCCEEECTTSCCSB-CC--GGGCTTCSEEECCSSCCSEE-----ECCTT
T ss_pred ---------------------------hcCCcCcEEECcCCCCCC-cC--hhhhhhhhhhhcccCccccc-----cCCch
Confidence 001133333333332222 11 34455555555555544331 12334
Q ss_pred ccEEEecCCCCceecCCCCCCCCCcceEeeccccccccccccccCCCCcceEEecCccCccccCCCCCceeEEEecCCcc
Q 035579 568 LREITIQRCGNLVSFPEGGLPCAKLSELRIFQCERLEALPKGLHNLTSLQELTIGGALPSLEEDGLPTNLHSLDIRGNME 647 (814)
Q Consensus 568 L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~~~~l~~lp~~~~~l~~L~~L~l~~~~~~l~~~~~~~~L~~L~l~~n~~ 647 (814)
|+.|++++| .+..++..+. ++|+.|++++| .+...+....+++|++|++++|.+
T Consensus 213 L~~L~ls~n-~l~~~~~~~~--~~L~~L~L~~n-----------------------~l~~~~~l~~l~~L~~L~Ls~N~l 266 (597)
T 3oja_B 213 VEELDASHN-SINVVRGPVN--VELTILKLQHN-----------------------NLTDTAWLLNYPGLVEVDLSYNEL 266 (597)
T ss_dssp CSEEECCSS-CCCEEECSCC--SCCCEEECCSS-----------------------CCCCCGGGGGCTTCSEEECCSSCC
T ss_pred hheeeccCC-cccccccccC--CCCCEEECCCC-----------------------CCCCChhhccCCCCCEEECCCCcc
Confidence 555555555 3333332221 34555555555 333333334456777777777776
Q ss_pred hhhhhhhcccccCCCCcccEEEEecCCCCCccCCccccccCCCCCCCCCcceEEeccCCCCcccccccccCCCCCeEEec
Q 035579 648 IWKSMIERGRGFHRFSSLRHLTIDGCDDDMVSFPPEDKRLGTALPLPASLTDLEIGRFPNLERLSSSIVDLQNLTELCLR 727 (814)
Q Consensus 648 ~~~~~~~~~~~l~~l~~L~~L~l~~~~~~l~~i~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~l~~L~~L~l~ 727 (814)
....+ ..+..+++|+.|++++| .+..+|... ..+++|+.|++++ |.+..+|..+..+++|+.|+++
T Consensus 267 ~~~~~----~~~~~l~~L~~L~Ls~N--~l~~l~~~~-------~~l~~L~~L~Ls~-N~l~~i~~~~~~l~~L~~L~L~ 332 (597)
T 3oja_B 267 EKIMY----HPFVKMQRLERLYISNN--RLVALNLYG-------QPIPTLKVLDLSH-NHLLHVERNQPQFDRLENLYLD 332 (597)
T ss_dssp CEEES----GGGTTCSSCCEEECTTS--CCCEEECSS-------SCCTTCCEEECCS-SCCCCCGGGHHHHTTCSEEECC
T ss_pred CCCCH----HHhcCccCCCEEECCCC--CCCCCCccc-------ccCCCCcEEECCC-CCCCccCcccccCCCCCEEECC
Confidence 65543 56788899999999987 677777655 4578999999999 6788899888889999999999
Q ss_pred CCCCCCccCCCCCcCCccEEeecCCch
Q 035579 728 DCPKLKYFPEKGLPSSLLRLSILSCPL 754 (814)
Q Consensus 728 ~c~~l~~lp~~~l~~~L~~L~i~~c~~ 754 (814)
+| .+..+|. ..+++|++|++++||.
T Consensus 333 ~N-~l~~~~~-~~~~~L~~L~l~~N~~ 357 (597)
T 3oja_B 333 HN-SIVTLKL-STHHTLKNLTLSHNDW 357 (597)
T ss_dssp SS-CCCCCCC-CTTCCCSEEECCSSCE
T ss_pred CC-CCCCcCh-hhcCCCCEEEeeCCCC
Confidence 95 6777764 3467999999999873
No 39
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.91 E-value=3.3e-23 Score=230.71 Aligned_cols=291 Identities=21% Similarity=0.171 Sum_probs=209.8
Q ss_pred CCCCeEEEecCCCcccchhhHHHHHHHHhhhccccccEEEeeccCCccccccccCCCCCcceEeeecCCCCcccCC--CC
Q 035579 332 CSLRRLTIRSCPKLQSLVAEEEKDQQQQLCELSCRLEYLILSCCEGLVKLPQSSLSLCSLREIGIYKCSSLVSFPE--VA 409 (814)
Q Consensus 332 ~~L~~L~l~~~~~l~~l~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~L~~~~~l~~~~~--~~ 409 (814)
+++++|+++++ .++.+++.. +..+ ++|++|+|++|.+....|..+..+++|++|+|++| .++.++. +.
T Consensus 32 ~~l~~L~L~~n-~l~~~~~~~----~~~l----~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~ 101 (477)
T 2id5_A 32 TETRLLDLGKN-RIKTLNQDE----FASF----PHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSN-RLKLIPLGVFT 101 (477)
T ss_dssp TTCSEEECCSS-CCCEECTTT----TTTC----TTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSS-CCCSCCTTSST
T ss_pred CCCcEEECCCC-ccceECHhH----ccCC----CCCCEEECCCCccCEeChhhhhCCccCCEEECCCC-cCCccCccccc
Confidence 46777777774 566554432 2333 77888888888776666777888888888888875 4555553 45
Q ss_pred CCCCCcEEEecccCCCCCCchhhhcCCCCCccEEEEecCCCCcccccc--cCcCccceeeeccccCCcccccccCCCCCC
Q 035579 410 LPSKLEKIHIGACDALKSLPEAWMCDTNSSLEILYIEGCRSLTYIAAV--QLPSSLKNLQIHGCYNIKTLTVEEGIPSSS 487 (814)
Q Consensus 410 ~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~--~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~ 487 (814)
.+++|++|++++|......+..+ ..+++|++|++++|. ++.++.. ..+++
T Consensus 102 ~l~~L~~L~Ls~n~i~~~~~~~~--~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~------------------------- 153 (477)
T 2id5_A 102 GLSNLTKLDISENKIVILLDYMF--QDLYNLKSLEVGDND-LVYISHRAFSGLNS------------------------- 153 (477)
T ss_dssp TCTTCCEEECTTSCCCEECTTTT--TTCTTCCEEEECCTT-CCEECTTSSTTCTT-------------------------
T ss_pred CCCCCCEEECCCCccccCChhHc--cccccCCEEECCCCc-cceeChhhccCCCC-------------------------
Confidence 67888888888887433334444 778888888888854 3332211 12233
Q ss_pred CCCCCCCCccEEeecCCCCcccccccCCCcccccEEEEeccCCcchhhHhhcCCCCcceEeecccCCcccccccCCCCCC
Q 035579 488 SSRYTSSILEHLSIVGCPSLTCIFSKNELPATLESLSVYKCSKLESIAERLDNNTSLETIGINFCENLKILPSGLHNLRQ 567 (814)
Q Consensus 488 ~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~ 567 (814)
|++|+++++............+++|+.|++++|......+..+..+++|+.|++++|...+.+|.......+
T Consensus 154 --------L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~ 225 (477)
T 2id5_A 154 --------LEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLN 225 (477)
T ss_dssp --------CCEEEEESCCCSSCCHHHHTTCTTCCEEEEESCCCCEECTTCSCSCTTCCEEEEECCTTCCEECTTTTTTCC
T ss_pred --------CCEEECCCCcCcccChhHhcccCCCcEEeCCCCcCcEeChhhcccCcccceeeCCCCccccccCcccccCcc
Confidence 444444443221110111223457899999998877777778999999999999999999888887777789
Q ss_pred ccEEEecCCCCceecCC-CCCCCCCcceEeeccccccccccccccCCCCcceEEecC-ccCcccc--CCCCCceeEEEec
Q 035579 568 LREITIQRCGNLVSFPE-GGLPCAKLSELRIFQCERLEALPKGLHNLTSLQELTIGG-ALPSLEE--DGLPTNLHSLDIR 643 (814)
Q Consensus 568 L~~L~l~~~~~l~~~~~-~~~~l~~L~~L~l~~~~~l~~lp~~~~~l~~L~~L~l~~-~~~~l~~--~~~~~~L~~L~l~ 643 (814)
|++|++++| .++.+|. .+..+++|+.|++++|......+..+..+++|+.|++++ .+..+.. ...+++|++|+++
T Consensus 226 L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~ 304 (477)
T 2id5_A 226 LTSLSITHC-NLTAVPYLAVRHLVYLRFLNLSYNPISTIEGSMLHELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVS 304 (477)
T ss_dssp CSEEEEESS-CCCSCCHHHHTTCTTCCEEECCSSCCCEECTTSCTTCTTCCEEECCSSCCSEECTTTBTTCTTCCEEECC
T ss_pred ccEEECcCC-cccccCHHHhcCccccCeeECCCCcCCccChhhccccccCCEEECCCCccceECHHHhcCcccCCEEECC
Confidence 999999998 5667774 577889999999999965444455789999999999999 6666543 4457999999999
Q ss_pred CCcchhhhhhhcccccCCCCcccEEEEecC
Q 035579 644 GNMEIWKSMIERGRGFHRFSSLRHLTIDGC 673 (814)
Q Consensus 644 ~n~~~~~~~~~~~~~l~~l~~L~~L~l~~~ 673 (814)
+|.+..... ..|..+++|++|++++|
T Consensus 305 ~N~l~~~~~----~~~~~l~~L~~L~l~~N 330 (477)
T 2id5_A 305 GNQLTTLEE----SVFHSVGNLETLILDSN 330 (477)
T ss_dssp SSCCSCCCG----GGBSCGGGCCEEECCSS
T ss_pred CCcCceeCH----hHcCCCcccCEEEccCC
Confidence 998876544 56889999999999997
No 40
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.90 E-value=6.2e-23 Score=234.35 Aligned_cols=310 Identities=18% Similarity=0.187 Sum_probs=241.7
Q ss_pred cceEEEcCCCCcchhccchhhhhhcCCCCCeEEEecCCCcccchhhHHHHHHHHhhhccccccEEEeeccCCcccccccc
Q 035579 306 LEELKINDMKEQTYMWKSHNELLQDICSLRRLTIRSCPKLQSLVAEEEKDQQQQLCELSCRLEYLILSCCEGLVKLPQSS 385 (814)
Q Consensus 306 L~~L~~~~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~~~~ 385 (814)
+..++.++++++.+ ...++..+..+++|++|+++++ .+..+++.. +..+ ++|++|+|++|.+.+..|..+
T Consensus 50 l~~l~~l~l~~~~l-~~lp~~~~~~l~~L~~L~L~~n-~l~~~~~~~----~~~l----~~L~~L~L~~n~l~~~~~~~~ 119 (597)
T 3oja_B 50 LNNQKIVTFKNSTM-RKLPAALLDSFRQVELLNLNDL-QIEEIDTYA----FAYA----HTIQKLYMGFNAIRYLPPHVF 119 (597)
T ss_dssp GCCCSEEEESSCEE-SEECTHHHHHCCCCSEEECTTS-CCCEECTTT----TTTC----TTCCEEECCSSCCCCCCTTTT
T ss_pred CCCceEEEeeCCCC-CCcCHHHHccCCCCcEEECCCC-CCCCCChHH----hcCC----CCCCEEECCCCcCCCCCHHHH
Confidence 44555666666655 4467778899999999999996 577776543 3333 899999999999877777788
Q ss_pred CCCCCcceEeeecCCCCcccCC--CCCCCCCcEEEecccCCCCCCchhhhcCCCCCccEEEEecCCCCcccccccCcCcc
Q 035579 386 LSLCSLREIGIYKCSSLVSFPE--VALPSKLEKIHIGACDALKSLPEAWMCDTNSSLEILYIEGCRSLTYIAAVQLPSSL 463 (814)
Q Consensus 386 ~~l~~L~~L~L~~~~~l~~~~~--~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~L 463 (814)
+.+++|++|+|++| .++.+|. +..+++|++|++++|. +..++...+ ..+++|++|++++|. ++.++.. .+++|
T Consensus 120 ~~l~~L~~L~L~~n-~l~~l~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~~-~~l~~L~~L~L~~N~-l~~~~~~-~l~~L 194 (597)
T 3oja_B 120 QNVPLLTVLVLERN-DLSSLPRGIFHNTPKLTTLSMSNNN-LERIEDDTF-QATTSLQNLQLSSNR-LTHVDLS-LIPSL 194 (597)
T ss_dssp TTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSC-CCBCCTTTT-TTCTTCCEEECTTSC-CSBCCGG-GCTTC
T ss_pred cCCCCCCEEEeeCC-CCCCCCHHHhccCCCCCEEEeeCCc-CCCCChhhh-hcCCcCcEEECcCCC-CCCcChh-hhhhh
Confidence 99999999999996 5666664 4679999999999998 555554333 889999999999964 5555533 34569
Q ss_pred ceeeeccccCCcccccccCCCCCCCCCCCCCCccEEeecCCCCcccccccCCCcccccEEEEeccCCcchhhHhhcCCCC
Q 035579 464 KNLQIHGCYNIKTLTVEEGIPSSSSSRYTSSILEHLSIVGCPSLTCIFSKNELPATLESLSVYKCSKLESIAERLDNNTS 543 (814)
Q Consensus 464 ~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~ 543 (814)
+.|+++++ .+..+ + ..+.|+.|+++++..... + ...+++|+.|++++|.... +..+..+++
T Consensus 195 ~~L~l~~n-~l~~l------~-------~~~~L~~L~ls~n~l~~~--~-~~~~~~L~~L~L~~n~l~~--~~~l~~l~~ 255 (597)
T 3oja_B 195 FHANVSYN-LLSTL------A-------IPIAVEELDASHNSINVV--R-GPVNVELTILKLQHNNLTD--TAWLLNYPG 255 (597)
T ss_dssp SEEECCSS-CCSEE------E-------CCTTCSEEECCSSCCCEE--E-CSCCSCCCEEECCSSCCCC--CGGGGGCTT
T ss_pred hhhhcccC-ccccc------c-------CCchhheeeccCCccccc--c-cccCCCCCEEECCCCCCCC--ChhhccCCC
Confidence 99998876 23211 1 124699999998764332 2 2334689999999987765 357899999
Q ss_pred cceEeecccCCcccccccCCCCCCccEEEecCCCCceecCCCCCCCCCcceEeeccccccccccccccCCCCcceEEecC
Q 035579 544 LETIGINFCENLKILPSGLHNLRQLREITIQRCGNLVSFPEGGLPCAKLSELRIFQCERLEALPKGLHNLTSLQELTIGG 623 (814)
Q Consensus 544 L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~~~~l~~lp~~~~~l~~L~~L~l~~ 623 (814)
|+.|++++|.+.+..|..+..+++|++|++++| .+..+|..+..+++|+.|++++| .+..+|..+..+++|+.|++++
T Consensus 256 L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N-~l~~l~~~~~~l~~L~~L~Ls~N-~l~~i~~~~~~l~~L~~L~L~~ 333 (597)
T 3oja_B 256 LVEVDLSYNELEKIMYHPFVKMQRLERLYISNN-RLVALNLYGQPIPTLKVLDLSHN-HLLHVERNQPQFDRLENLYLDH 333 (597)
T ss_dssp CSEEECCSSCCCEEESGGGTTCSSCCEEECTTS-CCCEEECSSSCCTTCCEEECCSS-CCCCCGGGHHHHTTCSEEECCS
T ss_pred CCEEECCCCccCCCCHHHhcCccCCCEEECCCC-CCCCCCcccccCCCCcEEECCCC-CCCccCcccccCCCCCEEECCC
Confidence 999999999999999999999999999999998 66778888888999999999999 5668888888899999999998
Q ss_pred -ccCccccCCCCCceeEEEecCCcchhhhh
Q 035579 624 -ALPSLEEDGLPTNLHSLDIRGNMEIWKSM 652 (814)
Q Consensus 624 -~~~~l~~~~~~~~L~~L~l~~n~~~~~~~ 652 (814)
.+..++ ...+++|+.|++++|+......
T Consensus 334 N~l~~~~-~~~~~~L~~L~l~~N~~~~~~~ 362 (597)
T 3oja_B 334 NSIVTLK-LSTHHTLKNLTLSHNDWDCNSL 362 (597)
T ss_dssp SCCCCCC-CCTTCCCSEEECCSSCEEHHHH
T ss_pred CCCCCcC-hhhcCCCCEEEeeCCCCCChhH
Confidence 666664 4556889999999988765543
No 41
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.88 E-value=5.9e-21 Score=201.33 Aligned_cols=288 Identities=14% Similarity=0.172 Sum_probs=169.9
Q ss_pred ccccEEEeeccCCccccccccCCCCCcceEeeecCCCCcccCC--CCCCCCCcEEEecccCCCCCC-chhhhcCCCCCcc
Q 035579 365 CRLEYLILSCCEGLVKLPQSSLSLCSLREIGIYKCSSLVSFPE--VALPSKLEKIHIGACDALKSL-PEAWMCDTNSSLE 441 (814)
Q Consensus 365 ~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~L~~~~~l~~~~~--~~~~~~L~~L~l~~~~~l~~~-~~~~~~~~l~~L~ 441 (814)
.+++.++++++.+ ..+|..+ .++|+.|++++| .++.++. +..+++|++|++++|. +..+ |..+ ..+++|+
T Consensus 31 c~l~~l~~~~~~l-~~lp~~~--~~~l~~L~L~~n-~i~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~--~~l~~L~ 103 (330)
T 1xku_A 31 CHLRVVQCSDLGL-EKVPKDL--PPDTALLDLQNN-KITEIKDGDFKNLKNLHTLILINNK-ISKISPGAF--APLVKLE 103 (330)
T ss_dssp EETTEEECTTSCC-CSCCCSC--CTTCCEEECCSS-CCCCBCTTTTTTCTTCCEEECCSSC-CCCBCTTTT--TTCTTCC
T ss_pred CCCeEEEecCCCc-cccCccC--CCCCeEEECCCC-cCCEeChhhhccCCCCCEEECCCCc-CCeeCHHHh--cCCCCCC
Confidence 3556666665543 3444433 245666666664 3444432 4456666666666666 3333 4444 5667777
Q ss_pred EEEEecCCCCcccccccCcCccceeeeccccCCcccccccCCCCCCCCCCCCCCccEEeecCCCCcccccccCCCccccc
Q 035579 442 ILYIEGCRSLTYIAAVQLPSSLKNLQIHGCYNIKTLTVEEGIPSSSSSRYTSSILEHLSIVGCPSLTCIFSKNELPATLE 521 (814)
Q Consensus 442 ~L~l~~~~~l~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~L~ 521 (814)
+|++++|. ++.++ .. ..++|+
T Consensus 104 ~L~Ls~n~-l~~l~-----------------------------~~-----------------------------~~~~L~ 124 (330)
T 1xku_A 104 RLYLSKNQ-LKELP-----------------------------EK-----------------------------MPKTLQ 124 (330)
T ss_dssp EEECCSSC-CSBCC-----------------------------SS-----------------------------CCTTCC
T ss_pred EEECCCCc-CCccC-----------------------------hh-----------------------------hccccc
Confidence 77776653 22111 10 012466
Q ss_pred EEEEeccCCcchhhHhhcCCCCcceEeecccCCcc--cccccCCCCCCccEEEecCCCCceecCCCCCCCCCcceEeecc
Q 035579 522 SLSVYKCSKLESIAERLDNNTSLETIGINFCENLK--ILPSGLHNLRQLREITIQRCGNLVSFPEGGLPCAKLSELRIFQ 599 (814)
Q Consensus 522 ~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~--~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~ 599 (814)
+|++++|......+..+..+++|++|++++|.+.. ..+..+..+++|++|++++| .+..+|..+. ++|++|++++
T Consensus 125 ~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n-~l~~l~~~~~--~~L~~L~l~~ 201 (330)
T 1xku_A 125 ELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADT-NITTIPQGLP--PSLTELHLDG 201 (330)
T ss_dssp EEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSS-CCCSCCSSCC--TTCSEEECTT
T ss_pred EEECCCCcccccCHhHhcCCccccEEECCCCcCCccCcChhhccCCCCcCEEECCCC-ccccCCcccc--ccCCEEECCC
Confidence 66666665555566678888888888888887753 56677788888888888887 5666776554 6888888888
Q ss_pred ccccccccccccCCCCcceEEecC-ccCcccc--CCCCCceeEEEecCCcchhhhhhhcccccCCCCcccEEEEecCCCC
Q 035579 600 CERLEALPKGLHNLTSLQELTIGG-ALPSLEE--DGLPTNLHSLDIRGNMEIWKSMIERGRGFHRFSSLRHLTIDGCDDD 676 (814)
Q Consensus 600 ~~~l~~lp~~~~~l~~L~~L~l~~-~~~~l~~--~~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~ 676 (814)
|......|..+..+++|+.|++++ .+..++. ...+++|++|++++|.+... |..+..+++|++|++++| .
T Consensus 202 n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~l-----p~~l~~l~~L~~L~l~~N--~ 274 (330)
T 1xku_A 202 NKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLVKV-----PGGLADHKYIQVVYLHNN--N 274 (330)
T ss_dssp SCCCEECTGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSCCSSC-----CTTTTTCSSCCEEECCSS--C
T ss_pred CcCCccCHHHhcCCCCCCEEECCCCcCceeChhhccCCCCCCEEECCCCcCccC-----ChhhccCCCcCEEECCCC--c
Confidence 854444466777777777777777 5554432 23356677777777755422 134666677777777766 5
Q ss_pred CccCCccccccCCCCCCCCCcceEEeccCCCCcc--cc-cccccCCCCCeEEecCC
Q 035579 677 MVSFPPEDKRLGTALPLPASLTDLEIGRFPNLER--LS-SSIVDLQNLTELCLRDC 729 (814)
Q Consensus 677 l~~i~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~--l~-~~~~~l~~L~~L~l~~c 729 (814)
+..++...+.........++|+.|++++ |.+.. ++ ..+..+++++.++++++
T Consensus 275 i~~~~~~~f~~~~~~~~~~~l~~l~l~~-N~~~~~~i~~~~f~~~~~l~~l~L~~N 329 (330)
T 1xku_A 275 ISAIGSNDFCPPGYNTKKASYSGVSLFS-NPVQYWEIQPSTFRCVYVRAAVQLGNY 329 (330)
T ss_dssp CCCCCTTSSSCSSCCTTSCCCSEEECCS-SSSCGGGSCGGGGTTCCCGGGEEC---
T ss_pred CCccChhhcCCcccccccccccceEeec-CcccccccCccccccccceeEEEeccc
Confidence 6666655432111112235666666666 33432 22 35556666666666653
No 42
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.87 E-value=6e-21 Score=201.35 Aligned_cols=286 Identities=12% Similarity=0.092 Sum_probs=152.0
Q ss_pred cccEEEeeccCCccccccccCCCCCcceEeeecCCCCcccC--CCCCCCCCcEEEecccCCCCCC-chhhhcCCCCCccE
Q 035579 366 RLEYLILSCCEGLVKLPQSSLSLCSLREIGIYKCSSLVSFP--EVALPSKLEKIHIGACDALKSL-PEAWMCDTNSSLEI 442 (814)
Q Consensus 366 ~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~L~~~~~l~~~~--~~~~~~~L~~L~l~~~~~l~~~-~~~~~~~~l~~L~~ 442 (814)
+++.++++++.+ ..+|..+ .++|++|++++|. ++.++ .+..+++|++|++++|. +..+ |..+ ..+++|++
T Consensus 34 ~l~~l~~~~~~l-~~ip~~~--~~~l~~L~l~~n~-i~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~--~~l~~L~~ 106 (332)
T 2ft3_A 34 HLRVVQCSDLGL-KAVPKEI--SPDTTLLDLQNND-ISELRKDDFKGLQHLYALVLVNNK-ISKIHEKAF--SPLRKLQK 106 (332)
T ss_dssp ETTEEECCSSCC-SSCCSCC--CTTCCEEECCSSC-CCEECTTTTTTCTTCCEEECCSSC-CCEECGGGS--TTCTTCCE
T ss_pred cCCEEECCCCCc-cccCCCC--CCCCeEEECCCCc-CCccCHhHhhCCCCCcEEECCCCc-cCccCHhHh--hCcCCCCE
Confidence 456666666553 3444433 2456666666643 33332 24456666666666665 3333 3333 56666666
Q ss_pred EEEecCCCCcccccccCcCccceeeeccccCCcccccccCCCCCCCCCCCCCCccEEeecCCCCcccccccCCCcccccE
Q 035579 443 LYIEGCRSLTYIAAVQLPSSLKNLQIHGCYNIKTLTVEEGIPSSSSSRYTSSILEHLSIVGCPSLTCIFSKNELPATLES 522 (814)
Q Consensus 443 L~l~~~~~l~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~L~~ 522 (814)
|++++|. ++.++.... ++|++
T Consensus 107 L~L~~n~-l~~l~~~~~----------------------------------------------------------~~L~~ 127 (332)
T 2ft3_A 107 LYISKNH-LVEIPPNLP----------------------------------------------------------SSLVE 127 (332)
T ss_dssp EECCSSC-CCSCCSSCC----------------------------------------------------------TTCCE
T ss_pred EECCCCc-CCccCcccc----------------------------------------------------------ccCCE
Confidence 6666643 222111100 23445
Q ss_pred EEEeccCCcchhhHhhcCCCCcceEeecccCCc--ccccccCCCCCCccEEEecCCCCceecCCCCCCCCCcceEeeccc
Q 035579 523 LSVYKCSKLESIAERLDNNTSLETIGINFCENL--KILPSGLHNLRQLREITIQRCGNLVSFPEGGLPCAKLSELRIFQC 600 (814)
Q Consensus 523 L~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~--~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~~ 600 (814)
|++++|......+..+..+++|+.|++++|.+. +..+..+..+ +|++|++++| .+..+|..+. ++|++|++++|
T Consensus 128 L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l-~L~~L~l~~n-~l~~l~~~~~--~~L~~L~l~~n 203 (332)
T 2ft3_A 128 LRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGL-KLNYLRISEA-KLTGIPKDLP--ETLNELHLDHN 203 (332)
T ss_dssp EECCSSCCCCCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSC-CCSCCBCCSS-BCSSCCSSSC--SSCSCCBCCSS
T ss_pred EECCCCccCccCHhHhCCCccCCEEECCCCccccCCCCcccccCC-ccCEEECcCC-CCCccCcccc--CCCCEEECCCC
Confidence 555554444333444666777777777777664 2455566666 7777777776 4555665443 47777777777
Q ss_pred cccccccccccCCCCcceEEecC-ccCcccc--CCCCCceeEEEecCCcchhhhhhhcccccCCCCcccEEEEecCCCCC
Q 035579 601 ERLEALPKGLHNLTSLQELTIGG-ALPSLEE--DGLPTNLHSLDIRGNMEIWKSMIERGRGFHRFSSLRHLTIDGCDDDM 677 (814)
Q Consensus 601 ~~l~~lp~~~~~l~~L~~L~l~~-~~~~l~~--~~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~l 677 (814)
......+..+..+++|+.|++++ .+..++. ...+++|++|++++|.+... |..+..+++|++|++++| .+
T Consensus 204 ~i~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~l-----p~~l~~l~~L~~L~l~~N--~l 276 (332)
T 2ft3_A 204 KIQAIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLSRV-----PAGLPDLKLLQVVYLHTN--NI 276 (332)
T ss_dssp CCCCCCTTSSTTCTTCSCCBCCSSCCCCCCTTGGGGCTTCCEEECCSSCCCBC-----CTTGGGCTTCCEEECCSS--CC
T ss_pred cCCccCHHHhcCCCCCCEEECCCCcCCcCChhHhhCCCCCCEEECCCCcCeec-----ChhhhcCccCCEEECCCC--CC
Confidence 43333345666666666666666 4444432 23345666666666654422 134566666777777665 55
Q ss_pred ccCCccccccCCCCCCCCCcceEEeccCCCCc--ccc-cccccCCCCCeEEecCC
Q 035579 678 VSFPPEDKRLGTALPLPASLTDLEIGRFPNLE--RLS-SSIVDLQNLTELCLRDC 729 (814)
Q Consensus 678 ~~i~~~~~~~~~~~~~~~~L~~L~l~~~~~l~--~l~-~~~~~l~~L~~L~l~~c 729 (814)
..++...+.........++|+.|+++++ .+. .++ ..+..+++|+.+++++|
T Consensus 277 ~~~~~~~~~~~~~~~~~~~l~~L~l~~N-~~~~~~~~~~~~~~l~~L~~l~l~~n 330 (332)
T 2ft3_A 277 TKVGVNDFCPVGFGVKRAYYNGISLFNN-PVPYWEVQPATFRCVTDRLAIQFGNY 330 (332)
T ss_dssp CBCCTTSSSCSSCCSSSCCBSEEECCSS-SSCGGGSCGGGGTTBCCSTTEEC---
T ss_pred CccChhHccccccccccccccceEeecC-cccccccCcccccccchhhhhhcccc
Confidence 5555543211111112355666666663 333 222 35556666666666654
No 43
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.86 E-value=1.1e-20 Score=199.25 Aligned_cols=104 Identities=15% Similarity=0.202 Sum_probs=51.0
Q ss_pred CCCCeEEEecCCCcccchhhHHHHHHHHhhhccccccEEEeeccCCccccccccCCCCCcceEeeecCCCCcccCCCCCC
Q 035579 332 CSLRRLTIRSCPKLQSLVAEEEKDQQQQLCELSCRLEYLILSCCEGLVKLPQSSLSLCSLREIGIYKCSSLVSFPEVALP 411 (814)
Q Consensus 332 ~~L~~L~l~~~~~l~~l~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~L~~~~~l~~~~~~~~~ 411 (814)
+++++|+++++ .++.++... +..+ ++|++|++++|.+.+..|..+..+++|++|++++| .++.+|... .
T Consensus 52 ~~l~~L~L~~n-~i~~~~~~~----~~~l----~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n-~l~~l~~~~-~ 120 (330)
T 1xku_A 52 PDTALLDLQNN-KITEIKDGD----FKNL----KNLHTLILINNKISKISPGAFAPLVKLERLYLSKN-QLKELPEKM-P 120 (330)
T ss_dssp TTCCEEECCSS-CCCCBCTTT----TTTC----TTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSS-CCSBCCSSC-C
T ss_pred CCCeEEECCCC-cCCEeChhh----hccC----CCCCEEECCCCcCCeeCHHHhcCCCCCCEEECCCC-cCCccChhh-c
Confidence 45555555553 344443321 2222 55556666555554444555555555666655553 233444221 2
Q ss_pred CCCcEEEecccCCCCCCchhhhcCCCCCccEEEEecC
Q 035579 412 SKLEKIHIGACDALKSLPEAWMCDTNSSLEILYIEGC 448 (814)
Q Consensus 412 ~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~~ 448 (814)
++|++|++++|. +..++...+ ..+++|++|++++|
T Consensus 121 ~~L~~L~l~~n~-l~~~~~~~~-~~l~~L~~L~l~~n 155 (330)
T 1xku_A 121 KTLQELRVHENE-ITKVRKSVF-NGLNQMIVVELGTN 155 (330)
T ss_dssp TTCCEEECCSSC-CCBBCHHHH-TTCTTCCEEECCSS
T ss_pred ccccEEECCCCc-ccccCHhHh-cCCccccEEECCCC
Confidence 555555555555 333333322 45555555555554
No 44
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.86 E-value=9.5e-22 Score=205.08 Aligned_cols=247 Identities=14% Similarity=0.071 Sum_probs=191.2
Q ss_pred CccEEeecCCCCcc--cccccCCCcccccEEEEec-cCCcchhhHhhcCCCCcceEeecccCCcccccccCCCCCCccEE
Q 035579 495 ILEHLSIVGCPSLT--CIFSKNELPATLESLSVYK-CSKLESIAERLDNNTSLETIGINFCENLKILPSGLHNLRQLREI 571 (814)
Q Consensus 495 ~L~~L~l~~~~~l~--~~~~~~~~~~~L~~L~l~~-~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L 571 (814)
+++.|+++++...+ .+.......++|++|++++ |...+.+|..++++++|++|++++|.+.+.+|..+..+++|++|
T Consensus 51 ~l~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L 130 (313)
T 1ogq_A 51 RVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTL 130 (313)
T ss_dssp CEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEE
T ss_pred eEEEEECCCCCccCCcccChhHhCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCEE
Confidence 46666666655443 3233344556889999985 66677888889999999999999999988888889999999999
Q ss_pred EecCCCCceecCCCCCCCCCcceEeeccccccccccccccCCC-CcceEEecC-ccC-cccc-CCCCCceeEEEecCCcc
Q 035579 572 TIQRCGNLVSFPEGGLPCAKLSELRIFQCERLEALPKGLHNLT-SLQELTIGG-ALP-SLEE-DGLPTNLHSLDIRGNME 647 (814)
Q Consensus 572 ~l~~~~~l~~~~~~~~~l~~L~~L~l~~~~~l~~lp~~~~~l~-~L~~L~l~~-~~~-~l~~-~~~~~~L~~L~l~~n~~ 647 (814)
++++|.....+|..+..+++|++|++++|.....+|..+..++ +|+.|++++ .+. .++. ...++ |++|++++|.+
T Consensus 131 ~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l~-L~~L~Ls~N~l 209 (313)
T 1ogq_A 131 DFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLN-LAFVDLSRNML 209 (313)
T ss_dssp ECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCC-CSEEECCSSEE
T ss_pred eCCCCccCCcCChHHhcCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCeeeccCChHHhCCc-ccEEECcCCcc
Confidence 9999855447787888889999999999866558888888888 899999988 443 2222 22334 99999999988
Q ss_pred hhhhhhhcccccCCCCcccEEEEecCCCCCccCCccccccCCCCCCCCCcceEEeccCCCCc-ccccccccCCCCCeEEe
Q 035579 648 IWKSMIERGRGFHRFSSLRHLTIDGCDDDMVSFPPEDKRLGTALPLPASLTDLEIGRFPNLE-RLSSSIVDLQNLTELCL 726 (814)
Q Consensus 648 ~~~~~~~~~~~l~~l~~L~~L~l~~~~~~l~~i~~~~~~~~~~~~~~~~L~~L~l~~~~~l~-~l~~~~~~l~~L~~L~l 726 (814)
....+ ..+..+++|+.|++++| .+...+... ..+++|++|++++ +.++ .+|.++..+++|++|++
T Consensus 210 ~~~~~----~~~~~l~~L~~L~L~~N--~l~~~~~~~-------~~l~~L~~L~Ls~-N~l~~~~p~~l~~l~~L~~L~L 275 (313)
T 1ogq_A 210 EGDAS----VLFGSDKNTQKIHLAKN--SLAFDLGKV-------GLSKNLNGLDLRN-NRIYGTLPQGLTQLKFLHSLNV 275 (313)
T ss_dssp EECCG----GGCCTTSCCSEEECCSS--EECCBGGGC-------CCCTTCCEEECCS-SCCEECCCGGGGGCTTCCEEEC
T ss_pred cCcCC----HHHhcCCCCCEEECCCC--ceeeecCcc-------cccCCCCEEECcC-CcccCcCChHHhcCcCCCEEEC
Confidence 76544 67889999999999997 554333333 4679999999999 5666 78889999999999999
Q ss_pred cCCCCCCccCCCCCcCCccEEeecCCchhh
Q 035579 727 RDCPKLKYFPEKGLPSSLLRLSILSCPLIE 756 (814)
Q Consensus 727 ~~c~~l~~lp~~~l~~~L~~L~i~~c~~l~ 756 (814)
++|+--..+|...-+++|+.+++.++|.+.
T Consensus 276 s~N~l~~~ip~~~~l~~L~~l~l~~N~~lc 305 (313)
T 1ogq_A 276 SFNNLCGEIPQGGNLQRFDVSAYANNKCLC 305 (313)
T ss_dssp CSSEEEEECCCSTTGGGSCGGGTCSSSEEE
T ss_pred cCCcccccCCCCccccccChHHhcCCCCcc
Confidence 996433478876558899999999988654
No 45
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.86 E-value=9.2e-21 Score=199.92 Aligned_cols=128 Identities=13% Similarity=0.143 Sum_probs=61.3
Q ss_pred CCcceEeecccCCcccccccCCCCCCccEEEecCCCCceecCC-CCCCCCCcceEeeccccccccccccccCCCCcceEE
Q 035579 542 TSLETIGINFCENLKILPSGLHNLRQLREITIQRCGNLVSFPE-GGLPCAKLSELRIFQCERLEALPKGLHNLTSLQELT 620 (814)
Q Consensus 542 ~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~-~~~~l~~L~~L~l~~~~~l~~lp~~~~~l~~L~~L~ 620 (814)
++|++|++++|.+.+..+..+..+++|++|++++| .+..++. .+..+++|++|++++| .++.+|..+..+++|+.|+
T Consensus 193 ~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~L~~N-~l~~lp~~l~~l~~L~~L~ 270 (332)
T 2ft3_A 193 ETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHN-QIRMIENGSLSFLPTLRELHLDNN-KLSRVPAGLPDLKLLQVVY 270 (332)
T ss_dssp SSCSCCBCCSSCCCCCCTTSSTTCTTCSCCBCCSS-CCCCCCTTGGGGCTTCCEEECCSS-CCCBCCTTGGGCTTCCEEE
T ss_pred CCCCEEECCCCcCCccCHHHhcCCCCCCEEECCCC-cCCcCChhHhhCCCCCCEEECCCC-cCeecChhhhcCccCCEEE
Confidence 34555555555555444445555555555555555 2222322 3444555555555555 3445555555555555555
Q ss_pred ecC-ccCccccCC--------CCCceeEEEecCCcchhhhhhhcccccCCCCcccEEEEecC
Q 035579 621 IGG-ALPSLEEDG--------LPTNLHSLDIRGNMEIWKSMIERGRGFHRFSSLRHLTIDGC 673 (814)
Q Consensus 621 l~~-~~~~l~~~~--------~~~~L~~L~l~~n~~~~~~~~~~~~~l~~l~~L~~L~l~~~ 673 (814)
+++ .+..++... ..++|+.|++++|+....... +..+..+++|+.+++++|
T Consensus 271 l~~N~l~~~~~~~~~~~~~~~~~~~l~~L~l~~N~~~~~~~~--~~~~~~l~~L~~l~l~~n 330 (332)
T 2ft3_A 271 LHTNNITKVGVNDFCPVGFGVKRAYYNGISLFNNPVPYWEVQ--PATFRCVTDRLAIQFGNY 330 (332)
T ss_dssp CCSSCCCBCCTTSSSCSSCCSSSCCBSEEECCSSSSCGGGSC--GGGGTTBCCSTTEEC---
T ss_pred CCCCCCCccChhHccccccccccccccceEeecCcccccccC--cccccccchhhhhhcccc
Confidence 554 333332211 134566666666665422111 144556666666666554
No 46
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.85 E-value=1.3e-20 Score=197.53 Aligned_cols=229 Identities=19% Similarity=0.267 Sum_probs=159.3
Q ss_pred ccccEEEeeccCCccccccccCCCCCcceEeeecCCCCcccCC-CCCCCCCcEEEecccCCCCCCchhhhcCCCCCccEE
Q 035579 365 CRLEYLILSCCEGLVKLPQSSLSLCSLREIGIYKCSSLVSFPE-VALPSKLEKIHIGACDALKSLPEAWMCDTNSSLEIL 443 (814)
Q Consensus 365 ~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~L~~~~~l~~~~~-~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L 443 (814)
++++.|++++|.+. .+|..+..+++|++|++++|. ++.+|. +..+++|++|++++|. +..+|..+ ..+++|++|
T Consensus 81 ~~l~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~n~-l~~lp~~~~~l~~L~~L~Ls~n~-l~~lp~~l--~~l~~L~~L 155 (328)
T 4fcg_A 81 PGRVALELRSVPLP-QFPDQAFRLSHLQHMTIDAAG-LMELPDTMQQFAGLETLTLARNP-LRALPASI--ASLNRLREL 155 (328)
T ss_dssp TTCCEEEEESSCCS-SCCSCGGGGTTCSEEEEESSC-CCCCCSCGGGGTTCSEEEEESCC-CCCCCGGG--GGCTTCCEE
T ss_pred cceeEEEccCCCch-hcChhhhhCCCCCEEECCCCC-ccchhHHHhccCCCCEEECCCCc-cccCcHHH--hcCcCCCEE
Confidence 56777777777653 666666667777777777753 335553 5557777777777776 55666665 667777777
Q ss_pred EEecCCCCcccccccCcCccceeeeccccCCcccccccCCCCCCCCCCCCCCccEEeecCCCCcccccccCCCcccccEE
Q 035579 444 YIEGCRSLTYIAAVQLPSSLKNLQIHGCYNIKTLTVEEGIPSSSSSRYTSSILEHLSIVGCPSLTCIFSKNELPATLESL 523 (814)
Q Consensus 444 ~l~~~~~l~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L 523 (814)
++++|+..+.+|.. +....+.+ . ...+++|++|+++++... .+......+++|++|
T Consensus 156 ~L~~n~~~~~~p~~-----~~~~~~~~---------------~---~~~l~~L~~L~L~~n~l~-~lp~~l~~l~~L~~L 211 (328)
T 4fcg_A 156 SIRACPELTELPEP-----LASTDASG---------------E---HQGLVNLQSLRLEWTGIR-SLPASIANLQNLKSL 211 (328)
T ss_dssp EEEEETTCCCCCSC-----SEEEC-CC---------------C---EEESTTCCEEEEEEECCC-CCCGGGGGCTTCCEE
T ss_pred ECCCCCCccccChh-----Hhhccchh---------------h---hccCCCCCEEECcCCCcC-cchHhhcCCCCCCEE
Confidence 77777655544432 11110000 0 001123444444443221 212223334578888
Q ss_pred EEeccCCcchhhHhhcCCCCcceEeecccCCcccccccCCCCCCccEEEecCCCCceecCCCCCCCCCcceEeecccccc
Q 035579 524 SVYKCSKLESIAERLDNNTSLETIGINFCENLKILPSGLHNLRQLREITIQRCGNLVSFPEGGLPCAKLSELRIFQCERL 603 (814)
Q Consensus 524 ~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~~~~l 603 (814)
++++|... .+|..+..+++|++|++++|.+.+.+|..+..+++|++|++++|...+.+|..+..+++|++|++++|+..
T Consensus 212 ~L~~N~l~-~l~~~l~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~ 290 (328)
T 4fcg_A 212 KIRNSPLS-ALGPAIHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNL 290 (328)
T ss_dssp EEESSCCC-CCCGGGGGCTTCCEEECTTCTTCCBCCCCTTCCCCCCEEECTTCTTCCBCCTTGGGCTTCCEEECTTCTTC
T ss_pred EccCCCCC-cCchhhccCCCCCEEECcCCcchhhhHHHhcCCCCCCEEECCCCCchhhcchhhhcCCCCCEEeCCCCCch
Confidence 88887655 46667889999999999999999999999999999999999999888889988888999999999999899
Q ss_pred ccccccccCCCCcceEEecC
Q 035579 604 EALPKGLHNLTSLQELTIGG 623 (814)
Q Consensus 604 ~~lp~~~~~l~~L~~L~l~~ 623 (814)
+.+|..+.++++|+.+++..
T Consensus 291 ~~iP~~l~~L~~L~~l~l~~ 310 (328)
T 4fcg_A 291 SRLPSLIAQLPANCIILVPP 310 (328)
T ss_dssp CCCCGGGGGSCTTCEEECCG
T ss_pred hhccHHHhhccCceEEeCCH
Confidence 99999999999999988876
No 47
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.85 E-value=1.8e-21 Score=203.02 Aligned_cols=82 Identities=20% Similarity=0.118 Sum_probs=47.1
Q ss_pred ccccEEEeeccCCcc--ccccccCCCCCcceEeeec-CCCCcccC-CCCCCCCCcEEEecccCCCCCCchhhhcCCCCCc
Q 035579 365 CRLEYLILSCCEGLV--KLPQSSLSLCSLREIGIYK-CSSLVSFP-EVALPSKLEKIHIGACDALKSLPEAWMCDTNSSL 440 (814)
Q Consensus 365 ~~L~~L~L~~~~~~~--~~~~~~~~l~~L~~L~L~~-~~~l~~~~-~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L 440 (814)
.+++.|++++|.+.+ .+|..+..+++|++|++++ +.....+| .+..+++|++|++++|...+.+|..+ ..+++|
T Consensus 50 ~~l~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~--~~l~~L 127 (313)
T 1ogq_A 50 YRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFL--SQIKTL 127 (313)
T ss_dssp CCEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGG--GGCTTC
T ss_pred ceEEEEECCCCCccCCcccChhHhCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHH--hCCCCC
Confidence 457777777777666 6777777777777777774 33222333 24445555555555555323444443 445555
Q ss_pred cEEEEecC
Q 035579 441 EILYIEGC 448 (814)
Q Consensus 441 ~~L~l~~~ 448 (814)
++|++++|
T Consensus 128 ~~L~Ls~N 135 (313)
T 1ogq_A 128 VTLDFSYN 135 (313)
T ss_dssp CEEECCSS
T ss_pred CEEeCCCC
Confidence 55555543
No 48
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.85 E-value=4.9e-22 Score=227.98 Aligned_cols=113 Identities=13% Similarity=0.092 Sum_probs=63.1
Q ss_pred hhcCCCCCeEEEecCCCcccchhhHHHHHHHHhhhccccccEEEeeccCCccccccccCCCCCcceEeeecCCCCcc---
Q 035579 328 LQDICSLRRLTIRSCPKLQSLVAEEEKDQQQQLCELSCRLEYLILSCCEGLVKLPQSSLSLCSLREIGIYKCSSLVS--- 404 (814)
Q Consensus 328 ~~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~L~~~~~l~~--- 404 (814)
...+++|++|+++++ .+..+....+...+..+ ++|++|++++|... .++..+..+++|++|+++++.....
T Consensus 188 ~~~~~~L~~L~L~~n-~~~~~~~~~l~~~~~~~----~~L~~L~L~~~~~~-~l~~~~~~~~~L~~L~l~~~~~~~~~~~ 261 (592)
T 3ogk_B 188 AQHNTSLEVLNFYMT-EFAKISPKDLETIARNC----RSLVSVKVGDFEIL-ELVGFFKAAANLEEFCGGSLNEDIGMPE 261 (592)
T ss_dssp HHHCCCCCEEECTTC-CCSSCCHHHHHHHHHHC----TTCCEEECSSCBGG-GGHHHHHHCTTCCEEEECBCCCCTTCTT
T ss_pred HhcCCCccEEEeecc-CCCccCHHHHHHHHhhC----CCCcEEeccCccHH-HHHHHHhhhhHHHhhcccccccccchHH
Confidence 345666777766664 33322222222222222 67777777776643 3556666677777777765332211
Q ss_pred -cCCCCCCCCCcEEEecccCCCCCCchhhhcCCCCCccEEEEecCC
Q 035579 405 -FPEVALPSKLEKIHIGACDALKSLPEAWMCDTNSSLEILYIEGCR 449 (814)
Q Consensus 405 -~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~~~ 449 (814)
...+..+++|+.|+++++. ...++..+ ..+++|++|++++|.
T Consensus 262 ~~~~l~~~~~L~~L~l~~~~-~~~l~~~~--~~~~~L~~L~Ls~~~ 304 (592)
T 3ogk_B 262 KYMNLVFPRKLCRLGLSYMG-PNEMPILF--PFAAQIRKLDLLYAL 304 (592)
T ss_dssp SSSCCCCCTTCCEEEETTCC-TTTGGGGG--GGGGGCCEEEETTCC
T ss_pred HHHHhhccccccccCccccc-hhHHHHHH--hhcCCCcEEecCCCc
Confidence 1234456677777777653 44455544 556777777777765
No 49
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.85 E-value=6.1e-21 Score=200.11 Aligned_cols=218 Identities=24% Similarity=0.312 Sum_probs=160.4
Q ss_pred ccccEEEEeccCCcchhhHhhcCCCCcceEeecccCCcccccccCCCCCCccEEEecCCCCceecCCCCCCCCCcceEee
Q 035579 518 ATLESLSVYKCSKLESIAERLDNNTSLETIGINFCENLKILPSGLHNLRQLREITIQRCGNLVSFPEGGLPCAKLSELRI 597 (814)
Q Consensus 518 ~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l 597 (814)
+.++.|++++|... .+|..+..+++|++|++++|.+. .+|..++.+++|++|++++| .+..+|..+..+++|++|++
T Consensus 81 ~~l~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~n~l~-~lp~~~~~l~~L~~L~Ls~n-~l~~lp~~l~~l~~L~~L~L 157 (328)
T 4fcg_A 81 PGRVALELRSVPLP-QFPDQAFRLSHLQHMTIDAAGLM-ELPDTMQQFAGLETLTLARN-PLRALPASIASLNRLRELSI 157 (328)
T ss_dssp TTCCEEEEESSCCS-SCCSCGGGGTTCSEEEEESSCCC-CCCSCGGGGTTCSEEEEESC-CCCCCCGGGGGCTTCCEEEE
T ss_pred cceeEEEccCCCch-hcChhhhhCCCCCEEECCCCCcc-chhHHHhccCCCCEEECCCC-ccccCcHHHhcCcCCCEEEC
Confidence 46777888776544 66777777888888888888777 67777788888888888887 45577777777888888888
Q ss_pred ccccccccccccccC---------CCCcceEEecC-ccCcccc-CCCCCceeEEEecCCcchhhhhhhcccccCCCCccc
Q 035579 598 FQCERLEALPKGLHN---------LTSLQELTIGG-ALPSLEE-DGLPTNLHSLDIRGNMEIWKSMIERGRGFHRFSSLR 666 (814)
Q Consensus 598 ~~~~~l~~lp~~~~~---------l~~L~~L~l~~-~~~~l~~-~~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~l~~L~ 666 (814)
++|...+.+|..+.. +++|++|++++ .+..+|. ...+++|++|++++|.....+ ..+..+++|+
T Consensus 158 ~~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~N~l~~l~-----~~l~~l~~L~ 232 (328)
T 4fcg_A 158 RACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIRSLPASIANLQNLKSLKIRNSPLSALG-----PAIHHLPKLE 232 (328)
T ss_dssp EEETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEECCCCCCGGGGGCTTCCEEEEESSCCCCCC-----GGGGGCTTCC
T ss_pred CCCCCccccChhHhhccchhhhccCCCCCEEECcCCCcCcchHhhcCCCCCCEEEccCCCCCcCc-----hhhccCCCCC
Confidence 888777777776543 77888888877 6655554 445677888888888766432 3467788888
Q ss_pred EEEEecCCCCCccCCccccccCCCCCCCCCcceEEeccCCCCcccccccccCCCCCeEEecCCCCCCccCCCCC-cCCcc
Q 035579 667 HLTIDGCDDDMVSFPPEDKRLGTALPLPASLTDLEIGRFPNLERLSSSIVDLQNLTELCLRDCPKLKYFPEKGL-PSSLL 745 (814)
Q Consensus 667 ~L~l~~~~~~l~~i~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~l~~L~~L~l~~c~~l~~lp~~~l-~~~L~ 745 (814)
+|++++|. ....+|... ..+++|++|++++|+..+.+|..+..+++|++|++++|+.++.+|.... +++|+
T Consensus 233 ~L~Ls~n~-~~~~~p~~~-------~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~iP~~l~~L~~L~ 304 (328)
T 4fcg_A 233 ELDLRGCT-ALRNYPPIF-------GGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANC 304 (328)
T ss_dssp EEECTTCT-TCCBCCCCT-------TCCCCCCEEECTTCTTCCBCCTTGGGCTTCCEEECTTCTTCCCCCGGGGGSCTTC
T ss_pred EEECcCCc-chhhhHHHh-------cCCCCCCEEECCCCCchhhcchhhhcCCCCCEEeCCCCCchhhccHHHhhccCce
Confidence 88888742 556666654 4678888888888777778887788888888888888888888876322 66777
Q ss_pred EEeecC
Q 035579 746 RLSILS 751 (814)
Q Consensus 746 ~L~i~~ 751 (814)
.+++..
T Consensus 305 ~l~l~~ 310 (328)
T 4fcg_A 305 IILVPP 310 (328)
T ss_dssp EEECCG
T ss_pred EEeCCH
Confidence 776654
No 50
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.85 E-value=1.1e-22 Score=225.82 Aligned_cols=226 Identities=21% Similarity=0.152 Sum_probs=131.8
Q ss_pred cccEEEEeccCCcchhhHhhc-----CCCCcceEeecccCCccc----ccccCCCCCCccEEEecCCCCceec------C
Q 035579 519 TLESLSVYKCSKLESIAERLD-----NNTSLETIGINFCENLKI----LPSGLHNLRQLREITIQRCGNLVSF------P 583 (814)
Q Consensus 519 ~L~~L~l~~~~~~~~~~~~~~-----~l~~L~~L~L~~n~~~~~----~~~~~~~l~~L~~L~l~~~~~l~~~------~ 583 (814)
+|++|++++|......+..+. ..++|++|++++|.+... ++..+..+++|++|++++|. ++.. +
T Consensus 171 ~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~-l~~~~~~~l~~ 249 (461)
T 1z7x_W 171 DFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNK-LGDVGMAELCP 249 (461)
T ss_dssp TCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSB-CHHHHHHHHHH
T ss_pred CCCEEECcCCCcchHHHHHHHHHHhcCCCCceEEEccCCCCcHHHHHHHHHHHHhCCCccEEeccCCc-CChHHHHHHHH
Confidence 455555555554333222222 245666666666665542 34555566667777776663 2221 1
Q ss_pred CCCCCCCCcceEeecccccccc-----ccccccCCCCcceEEecC-ccCc-----ccc--CCCCCceeEEEecCCcchhh
Q 035579 584 EGGLPCAKLSELRIFQCERLEA-----LPKGLHNLTSLQELTIGG-ALPS-----LEE--DGLPTNLHSLDIRGNMEIWK 650 (814)
Q Consensus 584 ~~~~~l~~L~~L~l~~~~~l~~-----lp~~~~~l~~L~~L~l~~-~~~~-----l~~--~~~~~~L~~L~l~~n~~~~~ 650 (814)
..+..+++|++|++++| .++. ++..+..+++|++|++++ .+.. +.. ....++|++|++++|.....
T Consensus 250 ~~~~~~~~L~~L~L~~n-~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~ 328 (461)
T 1z7x_W 250 GLLHPSSRLRTLWIWEC-GITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCSFTAA 328 (461)
T ss_dssp HHTSTTCCCCEEECTTS-CCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGG
T ss_pred HHhcCCCCceEEECcCC-CCCHHHHHHHHHHHhhCCCcceEECCCCCCchHHHHHHHHHhccCCccceeeEcCCCCCchH
Confidence 11223566777777776 3333 455566667777777776 3321 111 11236889999999987655
Q ss_pred hhhhcccccCCCCcccEEEEecCCCCCccCCc-cccccCCCC-CCCCCcceEEeccCCCCc-----ccccccccCCCCCe
Q 035579 651 SMIERGRGFHRFSSLRHLTIDGCDDDMVSFPP-EDKRLGTAL-PLPASLTDLEIGRFPNLE-----RLSSSIVDLQNLTE 723 (814)
Q Consensus 651 ~~~~~~~~l~~l~~L~~L~l~~~~~~l~~i~~-~~~~~~~~~-~~~~~L~~L~l~~~~~l~-----~l~~~~~~l~~L~~ 723 (814)
.....+..+..+++|++|++++| .+..... ... ..+ ...++|++|++++ +.++ .+|..+..+++|++
T Consensus 329 ~~~~l~~~l~~~~~L~~L~Ls~n--~i~~~~~~~l~---~~l~~~~~~L~~L~L~~-n~i~~~~~~~l~~~l~~~~~L~~ 402 (461)
T 1z7x_W 329 CCSHFSSVLAQNRFLLELQISNN--RLEDAGVRELC---QGLGQPGSVLRVLWLAD-CDVSDSSCSSLAATLLANHSLRE 402 (461)
T ss_dssp GHHHHHHHHHHCSSCCEEECCSS--BCHHHHHHHHH---HHHTSTTCCCCEEECTT-SCCCHHHHHHHHHHHHHCCCCCE
T ss_pred HHHHHHHHHhhCCCccEEEccCC--ccccccHHHHH---HHHcCCCCceEEEECCC-CCCChhhHHHHHHHHHhCCCccE
Confidence 33222345677889999999987 4433211 110 000 1257899999999 4677 67778888999999
Q ss_pred EEecCCCCCCccCCCC-------CcCCccEEeecCCc
Q 035579 724 LCLRDCPKLKYFPEKG-------LPSSLLRLSILSCP 753 (814)
Q Consensus 724 L~l~~c~~l~~lp~~~-------l~~~L~~L~i~~c~ 753 (814)
|++++| .++...... ....|+.|++.++.
T Consensus 403 L~l~~N-~i~~~~~~~l~~~l~~~~~~L~~L~~~~~~ 438 (461)
T 1z7x_W 403 LDLSNN-CLGDAGILQLVESVRQPGCLLEQLVLYDIY 438 (461)
T ss_dssp EECCSS-SCCHHHHHHHHHHHTSTTCCCCEEECTTCC
T ss_pred EECCCC-CCCHHHHHHHHHHhccCCcchhheeecccc
Confidence 999996 565432111 12367777777654
No 51
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.84 E-value=1.1e-21 Score=225.24 Aligned_cols=402 Identities=13% Similarity=0.115 Sum_probs=227.2
Q ss_pred CCCCcceEEEcCCCCcchh------cc-----chhhhhhcCCCCCeEEEecCCCcccchhhHHHHHHHHhhhcccc-ccE
Q 035579 302 RLPKLEELKINDMKEQTYM------WK-----SHNELLQDICSLRRLTIRSCPKLQSLVAEEEKDQQQQLCELSCR-LEY 369 (814)
Q Consensus 302 ~~~~L~~L~~~~l~~~~~~------~~-----~~~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~l~~~~~~-L~~ 369 (814)
.+++++.|.+.++...... |. ........+++|++|++++| .+..... ..+...+++ |++
T Consensus 71 ~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~-~i~~~~~-------~~l~~~~~~~L~~ 142 (592)
T 3ogk_B 71 RFPNLRSLKLKGKPRAAMFNLIPENWGGYVTPWVTEISNNLRQLKSVHFRRM-IVSDLDL-------DRLAKARADDLET 142 (592)
T ss_dssp HCTTCSEEEEECSCGGGGGTCSCTTSCCBCHHHHHHHHHHCTTCCEEEEESC-BCCHHHH-------HHHHHHHGGGCCE
T ss_pred hCCCCeEEEecCCcchhhcccccccccccchHHHHHHHhhCCCCCeEEeecc-EecHHHH-------HHHHHhccccCcE
Confidence 4677777777655432210 00 12233447889999999987 3433222 112221244 999
Q ss_pred EEeeccCCcc--ccccccCCCCCcceEeeecCCCCcccC-----C-CCCCCCCcEEEecccCCCC-----CCchhhhcCC
Q 035579 370 LILSCCEGLV--KLPQSSLSLCSLREIGIYKCSSLVSFP-----E-VALPSKLEKIHIGACDALK-----SLPEAWMCDT 436 (814)
Q Consensus 370 L~L~~~~~~~--~~~~~~~~l~~L~~L~L~~~~~l~~~~-----~-~~~~~~L~~L~l~~~~~l~-----~~~~~~~~~~ 436 (814)
|++++|.... .++.....+++|++|+|++|.. +... . ...+++|++|++++|. +. .++..+ ..
T Consensus 143 L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~-~~~~~~~l~~~~~~~~~L~~L~L~~n~-~~~~~~~~l~~~~--~~ 218 (592)
T 3ogk_B 143 LKLDKCSGFTTDGLLSIVTHCRKIKTLLMEESSF-SEKDGKWLHELAQHNTSLEVLNFYMTE-FAKISPKDLETIA--RN 218 (592)
T ss_dssp EEEESCEEEEHHHHHHHHHHCTTCSEEECTTCEE-ECCCSHHHHHHHHHCCCCCEEECTTCC-CSSCCHHHHHHHH--HH
T ss_pred EECcCCCCcCHHHHHHHHhhCCCCCEEECccccc-cCcchhHHHHHHhcCCCccEEEeeccC-CCccCHHHHHHHH--hh
Confidence 9998887322 2233334788999999988742 2221 1 1247889999998887 43 222222 56
Q ss_pred CCCccEEEEecCCCCccccc-ccCcCccceeeeccccCCcccccccCCCCCCCCCCCCCCccEEeecCCCCcccccccCC
Q 035579 437 NSSLEILYIEGCRSLTYIAA-VQLPSSLKNLQIHGCYNIKTLTVEEGIPSSSSSRYTSSILEHLSIVGCPSLTCIFSKNE 515 (814)
Q Consensus 437 l~~L~~L~l~~~~~l~~~~~-~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~ 515 (814)
+++|++|++++|. +..++. ....++|++|.+..+.... ..+........+++|+.+.++++.. ..+.....
T Consensus 219 ~~~L~~L~L~~~~-~~~l~~~~~~~~~L~~L~l~~~~~~~------~~~~~~~~l~~~~~L~~L~l~~~~~-~~l~~~~~ 290 (592)
T 3ogk_B 219 CRSLVSVKVGDFE-ILELVGFFKAAANLEEFCGGSLNEDI------GMPEKYMNLVFPRKLCRLGLSYMGP-NEMPILFP 290 (592)
T ss_dssp CTTCCEEECSSCB-GGGGHHHHHHCTTCCEEEECBCCCCT------TCTTSSSCCCCCTTCCEEEETTCCT-TTGGGGGG
T ss_pred CCCCcEEeccCcc-HHHHHHHHhhhhHHHhhccccccccc------chHHHHHHhhccccccccCccccch-hHHHHHHh
Confidence 7889999998865 333332 2334668888887543221 1122222333446788888877422 22122233
Q ss_pred CcccccEEEEeccCCcch-hhHhhcCCCCcceEeecccCCcccccccCCCCCCccEEEecC----------CCCcee--c
Q 035579 516 LPATLESLSVYKCSKLES-IAERLDNNTSLETIGINFCENLKILPSGLHNLRQLREITIQR----------CGNLVS--F 582 (814)
Q Consensus 516 ~~~~L~~L~l~~~~~~~~-~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~----------~~~l~~--~ 582 (814)
..++|++|++++|..... ++..+..+++|+.|+++++.....++.....+++|++|++++ |..++. +
T Consensus 291 ~~~~L~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L~L~~g~~~~~~~~~~~~~~~~~~ 370 (592)
T 3ogk_B 291 FAAQIRKLDLLYALLETEDHCTLIQKCPNLEVLETRNVIGDRGLEVLAQYCKQLKRLRIERGADEQGMEDEEGLVSQRGL 370 (592)
T ss_dssp GGGGCCEEEETTCCCCHHHHHHHHTTCTTCCEEEEEGGGHHHHHHHHHHHCTTCCEEEEECCCCSSTTSSTTCCCCHHHH
T ss_pred hcCCCcEEecCCCcCCHHHHHHHHHhCcCCCEEeccCccCHHHHHHHHHhCCCCCEEEeecCccccccccccCccCHHHH
Confidence 456788888888874333 334567888888888884333334444445678888888884 444432 1
Q ss_pred CCCCCCCCCcceEeeccccccccccccccC-CCCcceEEecC-----ccCccc------c-CCCCCceeEEEecCCcc--
Q 035579 583 PEGGLPCAKLSELRIFQCERLEALPKGLHN-LTSLQELTIGG-----ALPSLE------E-DGLPTNLHSLDIRGNME-- 647 (814)
Q Consensus 583 ~~~~~~l~~L~~L~l~~~~~l~~lp~~~~~-l~~L~~L~l~~-----~~~~l~------~-~~~~~~L~~L~l~~n~~-- 647 (814)
+.....+++|++|+++.+......+..+.. +++|+.|++++ .+...| . ...+++|++|+++.|..
T Consensus 371 ~~l~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~n~l~~~p~~~~~~~~~~~~~~L~~L~L~~~~~~l 450 (592)
T 3ogk_B 371 IALAQGCQELEYMAVYVSDITNESLESIGTYLKNLCDFRLVLLDREERITDLPLDNGVRSLLIGCKKLRRFAFYLRQGGL 450 (592)
T ss_dssp HHHHHHCTTCSEEEEEESCCCHHHHHHHHHHCCSCCEEEEEECSCCSCCSSCCCHHHHHHHHHHCTTCCEEEEECCGGGC
T ss_pred HHHHhhCccCeEEEeecCCccHHHHHHHHhhCCCCcEEEEeecCCCccccCchHHHHHHHHHHhCCCCCEEEEecCCCCc
Confidence 112234678888888555333333334433 77888888852 333221 1 12257788888876542
Q ss_pred hhhhhhhcccccCCCCcccEEEEecCCCCCccCCccccccCCCCCCCCCcceEEeccCCCCcc--cccccccCCCCCeEE
Q 035579 648 IWKSMIERGRGFHRFSSLRHLTIDGCDDDMVSFPPEDKRLGTALPLPASLTDLEIGRFPNLER--LSSSIVDLQNLTELC 725 (814)
Q Consensus 648 ~~~~~~~~~~~l~~l~~L~~L~l~~~~~~l~~i~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~--l~~~~~~l~~L~~L~ 725 (814)
...... .....+++|++|++++|...-..++... ..+++|++|++++|+ ++. ++.....+++|++|+
T Consensus 451 ~~~~~~---~~~~~~~~L~~L~L~~n~l~~~~~~~~~-------~~~~~L~~L~l~~n~-l~~~~~~~~~~~l~~L~~L~ 519 (592)
T 3ogk_B 451 TDLGLS---YIGQYSPNVRWMLLGYVGESDEGLMEFS-------RGCPNLQKLEMRGCC-FSERAIAAAVTKLPSLRYLW 519 (592)
T ss_dssp CHHHHH---HHHHSCTTCCEEEECSCCSSHHHHHHHH-------TCCTTCCEEEEESCC-CBHHHHHHHHHHCSSCCEEE
T ss_pred cHHHHH---HHHHhCccceEeeccCCCCCHHHHHHHH-------hcCcccCeeeccCCC-CcHHHHHHHHHhcCccCeeE
Confidence 222221 1223467788888877621111222222 346778888888865 442 343445677888888
Q ss_pred ecCCCCCCcc
Q 035579 726 LRDCPKLKYF 735 (814)
Q Consensus 726 l~~c~~l~~l 735 (814)
+++|+ ++..
T Consensus 520 ls~n~-it~~ 528 (592)
T 3ogk_B 520 VQGYR-ASMT 528 (592)
T ss_dssp EESCB-CCTT
T ss_pred CcCCc-CCHH
Confidence 88865 5543
No 52
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.82 E-value=4.3e-19 Score=194.84 Aligned_cols=180 Identities=18% Similarity=0.198 Sum_probs=88.4
Q ss_pred HhhcCCCCcceEeecccCCcccccccCCCCCCccEEEecCCCCceecCC-CCCCCCCcceEeeccccccccccc-cccCC
Q 035579 536 ERLDNNTSLETIGINFCENLKILPSGLHNLRQLREITIQRCGNLVSFPE-GGLPCAKLSELRIFQCERLEALPK-GLHNL 613 (814)
Q Consensus 536 ~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~-~~~~l~~L~~L~l~~~~~l~~lp~-~~~~l 613 (814)
..|.++++|++|++++|.+....+..+..+++|++|++++| .+..++. .+..+++|++|++++|+.+..++. .+.++
T Consensus 106 ~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N-~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l 184 (440)
T 3zyj_A 106 GAFNGLANLNTLELFDNRLTTIPNGAFVYLSKLKELWLRNN-PIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGL 184 (440)
T ss_dssp GGGTTCSSCCEEECCSSCCSSCCTTTSCSCSSCCEEECCSC-CCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTC
T ss_pred hhccCCccCCEEECCCCcCCeeCHhHhhccccCceeeCCCC-cccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcc
Confidence 33444444444444444444433334444555555555544 2233332 344444555555554444444433 34445
Q ss_pred CCcceEEecC-ccCccccCCCCCceeEEEecCCcchhhhhhhcccccCCCCcccEEEEecCCCCCccCCccccccCCCCC
Q 035579 614 TSLQELTIGG-ALPSLEEDGLPTNLHSLDIRGNMEIWKSMIERGRGFHRFSSLRHLTIDGCDDDMVSFPPEDKRLGTALP 692 (814)
Q Consensus 614 ~~L~~L~l~~-~~~~l~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~l~~i~~~~~~~~~~~~ 692 (814)
++|+.|++++ .+..++....+++|++|++++|.+....+ ..|..+++|+.|++++| .+..++...+ .
T Consensus 185 ~~L~~L~L~~n~l~~~~~~~~l~~L~~L~Ls~N~l~~~~~----~~~~~l~~L~~L~L~~n--~l~~~~~~~~------~ 252 (440)
T 3zyj_A 185 SNLRYLNLAMCNLREIPNLTPLIKLDELDLSGNHLSAIRP----GSFQGLMHLQKLWMIQS--QIQVIERNAF------D 252 (440)
T ss_dssp SSCCEEECTTSCCSSCCCCTTCSSCCEEECTTSCCCEECT----TTTTTCTTCCEEECTTC--CCCEECTTSS------T
T ss_pred cccCeecCCCCcCccccccCCCcccCEEECCCCccCccCh----hhhccCccCCEEECCCC--ceeEEChhhh------c
Confidence 5555555554 44444444445555555555555444322 44555666666666654 4444443321 3
Q ss_pred CCCCcceEEeccCCCCccccc-ccccCCCCCeEEecCC
Q 035579 693 LPASLTDLEIGRFPNLERLSS-SIVDLQNLTELCLRDC 729 (814)
Q Consensus 693 ~~~~L~~L~l~~~~~l~~l~~-~~~~l~~L~~L~l~~c 729 (814)
.+++|++|+|++ |.++.+|. .+..+++|+.|+++++
T Consensus 253 ~l~~L~~L~L~~-N~l~~~~~~~~~~l~~L~~L~L~~N 289 (440)
T 3zyj_A 253 NLQSLVEINLAH-NNLTLLPHDLFTPLHHLERIHLHHN 289 (440)
T ss_dssp TCTTCCEEECTT-SCCCCCCTTTTSSCTTCCEEECCSS
T ss_pred CCCCCCEEECCC-CCCCccChhHhccccCCCEEEcCCC
Confidence 455666666666 45555554 3455566666666554
No 53
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.82 E-value=2.5e-19 Score=190.72 Aligned_cols=274 Identities=14% Similarity=0.118 Sum_probs=159.3
Q ss_pred CCCcceEeeecCCCCcccCCCCCCCCCcEEEecccCCCCCCchhhhcCCCCCccEEEEecCCCCcccccccCcCccceee
Q 035579 388 LCSLREIGIYKCSSLVSFPEVALPSKLEKIHIGACDALKSLPEAWMCDTNSSLEILYIEGCRSLTYIAAVQLPSSLKNLQ 467 (814)
Q Consensus 388 l~~L~~L~L~~~~~l~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~L~~L~ 467 (814)
|+.....+.++ +.++.+|. ...++|++|++++|. +..++...+ ..+++|++|++++|. ++.++.
T Consensus 30 C~~~~~c~~~~-~~l~~iP~-~~~~~L~~L~l~~n~-i~~~~~~~~-~~l~~L~~L~L~~n~-l~~~~~----------- 93 (353)
T 2z80_A 30 CDRNGICKGSS-GSLNSIPS-GLTEAVKSLDLSNNR-ITYISNSDL-QRCVNLQALVLTSNG-INTIEE----------- 93 (353)
T ss_dssp ECTTSEEECCS-TTCSSCCT-TCCTTCCEEECTTSC-CCEECTTTT-TTCTTCCEEECTTSC-CCEECT-----------
T ss_pred CCCCeEeeCCC-CCcccccc-cccccCcEEECCCCc-CcccCHHHh-ccCCCCCEEECCCCc-cCccCH-----------
Confidence 44445556665 35566664 234577777777776 555554322 666777777776653 221110
Q ss_pred eccccCCcccccccCCCCCCCCCCCCCCccEEeecCCCCcccccccCCCcccccEEEEeccCCcchhhHhhcCCCCcceE
Q 035579 468 IHGCYNIKTLTVEEGIPSSSSSRYTSSILEHLSIVGCPSLTCIFSKNELPATLESLSVYKCSKLESIAERLDNNTSLETI 547 (814)
Q Consensus 468 l~~~~~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L 547 (814)
. .....++|++|++++|......+..++.+++|++|
T Consensus 94 -----------------~---------------------------~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L 129 (353)
T 2z80_A 94 -----------------D---------------------------SFSSLGSLEHLDLSYNYLSNLSSSWFKPLSSLTFL 129 (353)
T ss_dssp -----------------T---------------------------TTTTCTTCCEEECCSSCCSSCCHHHHTTCTTCSEE
T ss_pred -----------------h---------------------------hcCCCCCCCEEECCCCcCCcCCHhHhCCCccCCEE
Confidence 0 00112356666666665554444457778888888
Q ss_pred eecccCCccccc-ccCCCCCCccEEEecCCCCceecC-CCCCCCCCcceEeeccccccccccccccCCCCcceEEecCcc
Q 035579 548 GINFCENLKILP-SGLHNLRQLREITIQRCGNLVSFP-EGGLPCAKLSELRIFQCERLEALPKGLHNLTSLQELTIGGAL 625 (814)
Q Consensus 548 ~L~~n~~~~~~~-~~~~~l~~L~~L~l~~~~~l~~~~-~~~~~l~~L~~L~l~~~~~l~~lp~~~~~l~~L~~L~l~~~~ 625 (814)
++++|.+....+ ..+..+++|++|++++|..+..++ ..+..+++|++|++++|......|..+..+++|++|++
T Consensus 130 ~L~~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l---- 205 (353)
T 2z80_A 130 NLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLIL---- 205 (353)
T ss_dssp ECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEE----
T ss_pred ECCCCCCcccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEECCCCCcCccCHHHHhccccCCeecC----
Confidence 888877765433 367777788888887775555554 35667777777777777544444555555555555555
Q ss_pred CccccCCCCCceeEEEecCCcchhhhhhhcccccCCCCcccEEEEecCCCCCccCCccccccCCCCCCCCCcceEEeccC
Q 035579 626 PSLEEDGLPTNLHSLDIRGNMEIWKSMIERGRGFHRFSSLRHLTIDGCDDDMVSFPPEDKRLGTALPLPASLTDLEIGRF 705 (814)
Q Consensus 626 ~~l~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~l~~i~~~~~~~~~~~~~~~~L~~L~l~~~ 705 (814)
++|....... ..+..+++|++|++++| .+..++..... .....+.++.++++++
T Consensus 206 -----------------~~n~l~~~~~----~~~~~~~~L~~L~L~~n--~l~~~~~~~l~---~~~~~~~l~~l~L~~~ 259 (353)
T 2z80_A 206 -----------------HMKQHILLLE----IFVDVTSSVECLELRDT--DLDTFHFSELS---TGETNSLIKKFTFRNV 259 (353)
T ss_dssp -----------------ECSCSTTHHH----HHHHHTTTEEEEEEESC--BCTTCCCC---------CCCCCCEEEEESC
T ss_pred -----------------CCCccccchh----hhhhhcccccEEECCCC--ccccccccccc---cccccchhhccccccc
Confidence 4444322221 22334556666666654 33333322100 0023455666666663
Q ss_pred CCCc-----ccccccccCCCCCeEEecCCCCCCccCCCCC--cCCccEEeecCCc
Q 035579 706 PNLE-----RLSSSIVDLQNLTELCLRDCPKLKYFPEKGL--PSSLLRLSILSCP 753 (814)
Q Consensus 706 ~~l~-----~l~~~~~~l~~L~~L~l~~c~~l~~lp~~~l--~~~L~~L~i~~c~ 753 (814)
.+. .+|.++..+++|+.|++++| +++.+|...+ +++|++|++++||
T Consensus 260 -~l~~~~l~~l~~~l~~l~~L~~L~Ls~N-~l~~i~~~~~~~l~~L~~L~L~~N~ 312 (353)
T 2z80_A 260 -KITDESLFQVMKLLNQISGLLELEFSRN-QLKSVPDGIFDRLTSLQKIWLHTNP 312 (353)
T ss_dssp -BCCHHHHHHHHHHHHTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred -cccCcchhhhHHHHhcccCCCEEECCCC-CCCccCHHHHhcCCCCCEEEeeCCC
Confidence 333 46667788888888888884 7888887543 6788888888875
No 54
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.82 E-value=2.2e-19 Score=191.07 Aligned_cols=277 Identities=15% Similarity=0.111 Sum_probs=160.8
Q ss_pred CCCCCeEEEecCCCcccchhhHHHHHHHHhhhccccccEEEeeccCCccccccccCCCCCcceEeeecCCCCcccC--CC
Q 035579 331 ICSLRRLTIRSCPKLQSLVAEEEKDQQQQLCELSCRLEYLILSCCEGLVKLPQSSLSLCSLREIGIYKCSSLVSFP--EV 408 (814)
Q Consensus 331 l~~L~~L~l~~~~~l~~l~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~L~~~~~l~~~~--~~ 408 (814)
++.....+.++ ..++.+|.. ++++|++|++++|.+....+..+..+++|++|++++| .++.++ .+
T Consensus 30 C~~~~~c~~~~-~~l~~iP~~-----------~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~ 96 (353)
T 2z80_A 30 CDRNGICKGSS-GSLNSIPSG-----------LTEAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSN-GINTIEEDSF 96 (353)
T ss_dssp ECTTSEEECCS-TTCSSCCTT-----------CCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTS-CCCEECTTTT
T ss_pred CCCCeEeeCCC-CCccccccc-----------ccccCcEEECCCCcCcccCHHHhccCCCCCEEECCCC-ccCccCHhhc
Confidence 34444455555 366666653 2368888888888875554557888888888888886 444443 26
Q ss_pred CCCCCCcEEEecccCCCCCCchhhhcCCCCCccEEEEecCCCCcccccccCcCccceeeeccccCCcccccccCCCCCCC
Q 035579 409 ALPSKLEKIHIGACDALKSLPEAWMCDTNSSLEILYIEGCRSLTYIAAVQLPSSLKNLQIHGCYNIKTLTVEEGIPSSSS 488 (814)
Q Consensus 409 ~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~ 488 (814)
..+++|++|++++|. +..++...+ ..+++|++|++++|. ++.++..
T Consensus 97 ~~l~~L~~L~Ls~n~-l~~~~~~~~-~~l~~L~~L~L~~n~-l~~l~~~------------------------------- 142 (353)
T 2z80_A 97 SSLGSLEHLDLSYNY-LSNLSSSWF-KPLSSLTFLNLLGNP-YKTLGET------------------------------- 142 (353)
T ss_dssp TTCTTCCEEECCSSC-CSSCCHHHH-TTCTTCSEEECTTCC-CSSSCSS-------------------------------
T ss_pred CCCCCCCEEECCCCc-CCcCCHhHh-CCCccCCEEECCCCC-CcccCch-------------------------------
Confidence 667888888888887 666766533 778888888888764 2211110
Q ss_pred CCCCCCCccEEeecCCCCcccccccCCCcccccEEEEeccCCcchh-hHhhcCCCCcceEeecccCCcccccccCCCCCC
Q 035579 489 SRYTSSILEHLSIVGCPSLTCIFSKNELPATLESLSVYKCSKLESI-AERLDNNTSLETIGINFCENLKILPSGLHNLRQ 567 (814)
Q Consensus 489 ~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~l~~~~~~~~~-~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~ 567 (814)
......++|++|++++|+..+.+ +..+..+++|++|++++|.+.+..|..+..+++
T Consensus 143 -----------------------~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~ 199 (353)
T 2z80_A 143 -----------------------SLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYEPKSLKSIQN 199 (353)
T ss_dssp -----------------------CSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSE
T ss_pred -----------------------hhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEECCCCCcCccCHHHHhcccc
Confidence 00011235666666666433333 445677777777777777777766777777777
Q ss_pred ccEEEecCCCCceecCCCC-CCCCCcceEeeccccccccccccccCCCCcceEEecCccCccccCCCCCceeEEEecCCc
Q 035579 568 LREITIQRCGNLVSFPEGG-LPCAKLSELRIFQCERLEALPKGLHNLTSLQELTIGGALPSLEEDGLPTNLHSLDIRGNM 646 (814)
Q Consensus 568 L~~L~l~~~~~l~~~~~~~-~~l~~L~~L~l~~~~~l~~lp~~~~~l~~L~~L~l~~~~~~l~~~~~~~~L~~L~l~~n~ 646 (814)
|++|++++|. +..+|..+ ..+++|++|++++|. ++.++. ..++.....+.++.++++++.
T Consensus 200 L~~L~l~~n~-l~~~~~~~~~~~~~L~~L~L~~n~-l~~~~~-----------------~~l~~~~~~~~l~~l~L~~~~ 260 (353)
T 2z80_A 200 VSHLILHMKQ-HILLLEIFVDVTSSVECLELRDTD-LDTFHF-----------------SELSTGETNSLIKKFTFRNVK 260 (353)
T ss_dssp EEEEEEECSC-STTHHHHHHHHTTTEEEEEEESCB-CTTCCC-----------------C------CCCCCCEEEEESCB
T ss_pred CCeecCCCCc-cccchhhhhhhcccccEEECCCCc-cccccc-----------------cccccccccchhhcccccccc
Confidence 7777777763 34444322 235566666666663 222210 001111224556667777766
Q ss_pred chhhhhhhcccccCCCCcccEEEEecCCCCCccCCccccccCCCCCCCCCcceEEecc
Q 035579 647 EIWKSMIERGRGFHRFSSLRHLTIDGCDDDMVSFPPEDKRLGTALPLPASLTDLEIGR 704 (814)
Q Consensus 647 ~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~l~~i~~~~~~~~~~~~~~~~L~~L~l~~ 704 (814)
.........+..+..+++|++|++++| .+..+|...+ ..+++|++|++++
T Consensus 261 l~~~~l~~l~~~l~~l~~L~~L~Ls~N--~l~~i~~~~~------~~l~~L~~L~L~~ 310 (353)
T 2z80_A 261 ITDESLFQVMKLLNQISGLLELEFSRN--QLKSVPDGIF------DRLTSLQKIWLHT 310 (353)
T ss_dssp CCHHHHHHHHHHHHTCTTCCEEECCSS--CCCCCCTTTT------TTCTTCCEEECCS
T ss_pred ccCcchhhhHHHHhcccCCCEEECCCC--CCCccCHHHH------hcCCCCCEEEeeC
Confidence 554433222344556666666666665 4445555431 2345555555555
No 55
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.81 E-value=6.7e-19 Score=194.04 Aligned_cols=179 Identities=23% Similarity=0.251 Sum_probs=87.2
Q ss_pred hcCCCCcceEeecccCCcccccccCCCCCCccEEEecCCCCceecCC-CCCCCCCcceEeeccccccccccc-cccCCCC
Q 035579 538 LDNNTSLETIGINFCENLKILPSGLHNLRQLREITIQRCGNLVSFPE-GGLPCAKLSELRIFQCERLEALPK-GLHNLTS 615 (814)
Q Consensus 538 ~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~-~~~~l~~L~~L~l~~~~~l~~lp~-~~~~l~~ 615 (814)
+.++++|++|++++|.+....+..+..+++|++|++++| .+..+|. .+..+++|++|++++|+.++.++. .+..+++
T Consensus 119 ~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~ 197 (452)
T 3zyi_A 119 FNGLASLNTLELFDNWLTVIPSGAFEYLSKLRELWLRNN-PIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFN 197 (452)
T ss_dssp TTTCTTCCEEECCSSCCSBCCTTTSSSCTTCCEEECCSC-CCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTT
T ss_pred ccCcccCCEEECCCCcCCccChhhhcccCCCCEEECCCC-CcceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCC
Confidence 344444444444444444333334444444444444444 2233332 334444444444444444444433 2444445
Q ss_pred cceEEecC-ccCccccCCCCCceeEEEecCCcchhhhhhhcccccCCCCcccEEEEecCCCCCccCCccccccCCCCCCC
Q 035579 616 LQELTIGG-ALPSLEEDGLPTNLHSLDIRGNMEIWKSMIERGRGFHRFSSLRHLTIDGCDDDMVSFPPEDKRLGTALPLP 694 (814)
Q Consensus 616 L~~L~l~~-~~~~l~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~l~~i~~~~~~~~~~~~~~ 694 (814)
|+.|++++ .+..++....+++|++|++++|.+....+ ..|..+++|+.|++++| .+..++...+ ..+
T Consensus 198 L~~L~L~~n~l~~~~~~~~l~~L~~L~Ls~N~l~~~~~----~~~~~l~~L~~L~L~~n--~l~~~~~~~~------~~l 265 (452)
T 3zyi_A 198 LKYLNLGMCNIKDMPNLTPLVGLEELEMSGNHFPEIRP----GSFHGLSSLKKLWVMNS--QVSLIERNAF------DGL 265 (452)
T ss_dssp CCEEECTTSCCSSCCCCTTCTTCCEEECTTSCCSEECG----GGGTTCTTCCEEECTTS--CCCEECTTTT------TTC
T ss_pred CCEEECCCCcccccccccccccccEEECcCCcCcccCc----ccccCccCCCEEEeCCC--cCceECHHHh------cCC
Confidence 55555544 44444444445556666666665544333 44556666666666665 4444433321 345
Q ss_pred CCcceEEeccCCCCccccc-ccccCCCCCeEEecCCC
Q 035579 695 ASLTDLEIGRFPNLERLSS-SIVDLQNLTELCLRDCP 730 (814)
Q Consensus 695 ~~L~~L~l~~~~~l~~l~~-~~~~l~~L~~L~l~~c~ 730 (814)
++|+.|++++ |.++.+|. .+..+++|+.|++++++
T Consensus 266 ~~L~~L~L~~-N~l~~~~~~~~~~l~~L~~L~L~~Np 301 (452)
T 3zyi_A 266 ASLVELNLAH-NNLSSLPHDLFTPLRYLVELHLHHNP 301 (452)
T ss_dssp TTCCEEECCS-SCCSCCCTTSSTTCTTCCEEECCSSC
T ss_pred CCCCEEECCC-CcCCccChHHhccccCCCEEEccCCC
Confidence 6666666666 45555554 34556666666666543
No 56
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.81 E-value=8.8e-22 Score=218.43 Aligned_cols=116 Identities=21% Similarity=0.229 Sum_probs=62.2
Q ss_pred hhhhcCCCCCeEEEecCCCcccchhhHHHHHHHHhhhccccccEEEeeccCCcc----ccccccCCCCCcceEeeecCCC
Q 035579 326 ELLQDICSLRRLTIRSCPKLQSLVAEEEKDQQQQLCELSCRLEYLILSCCEGLV----KLPQSSLSLCSLREIGIYKCSS 401 (814)
Q Consensus 326 ~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~----~~~~~~~~l~~L~~L~L~~~~~ 401 (814)
..+..+++|++|+++++ .+.......+ ...+....++|++|++++|.+.. .++..+..+++|++|++++|.
T Consensus 50 ~~l~~~~~L~~L~Ls~n-~l~~~~~~~l---~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~- 124 (461)
T 1z7x_W 50 SALRVNPALAELNLRSN-ELGDVGVHCV---LQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNL- 124 (461)
T ss_dssp HHHHTCTTCCEEECTTC-CCHHHHHHHH---HHTTCSTTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSB-
T ss_pred HHHHhCCCcCEEeCCCC-cCChHHHHHH---HHHHhhCCCceeEEEccCCCCCHHHHHHHHHHHccCCceeEEECCCCc-
Confidence 34456677777777774 3433221111 11110001157777777777652 446667777777777777764
Q ss_pred CcccC--C-----CCCCCCCcEEEecccCCCCCC-----chhhhcCCCCCccEEEEecCC
Q 035579 402 LVSFP--E-----VALPSKLEKIHIGACDALKSL-----PEAWMCDTNSSLEILYIEGCR 449 (814)
Q Consensus 402 l~~~~--~-----~~~~~~L~~L~l~~~~~l~~~-----~~~~~~~~l~~L~~L~l~~~~ 449 (814)
++... . ....++|++|++++|. +... +..+ ..+++|++|++++|.
T Consensus 125 i~~~~~~~l~~~l~~~~~~L~~L~L~~n~-l~~~~~~~l~~~l--~~~~~L~~L~L~~n~ 181 (461)
T 1z7x_W 125 LGDAGLQLLCEGLLDPQCRLEKLQLEYCS-LSAASCEPLASVL--RAKPDFKELTVSNND 181 (461)
T ss_dssp CHHHHHHHHHHHHTSTTCCCCEEECTTSC-CBGGGHHHHHHHH--HHCTTCCEEECCSSB
T ss_pred CchHHHHHHHHHHhcCCCcceEEECCCCC-CCHHHHHHHHHHH--hhCCCCCEEECcCCC
Confidence 33211 0 1124567777777776 3331 2222 446777777777754
No 57
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.81 E-value=6.6e-19 Score=194.09 Aligned_cols=220 Identities=19% Similarity=0.199 Sum_probs=186.4
Q ss_pred CcccccEEEEeccCCcchhhHhhcCCCCcceEeecccCCcccccccCCCCCCccEEEecCCCCceecCC-CCCCCCCcce
Q 035579 516 LPATLESLSVYKCSKLESIAERLDNNTSLETIGINFCENLKILPSGLHNLRQLREITIQRCGNLVSFPE-GGLPCAKLSE 594 (814)
Q Consensus 516 ~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~-~~~~l~~L~~ 594 (814)
++++++.|++++|......+..|.++++|+.|++++|.+.+..+..+..+++|++|++++| .+..+|. .+..+++|++
T Consensus 73 ~~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~ 151 (452)
T 3zyi_A 73 IPSNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDN-WLTVIPSGAFEYLSKLRE 151 (452)
T ss_dssp CCTTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSS-CCSBCCTTTSSSCTTCCE
T ss_pred CCCCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCCC-cCCccChhhhcccCCCCE
Confidence 3457899999998887777888999999999999999999988899999999999999998 5666765 4778999999
Q ss_pred Eeecccccccccc-ccccCCCCcceEEecC--ccCcccc--CCCCCceeEEEecCCcchhhhhhhcccccCCCCcccEEE
Q 035579 595 LRIFQCERLEALP-KGLHNLTSLQELTIGG--ALPSLEE--DGLPTNLHSLDIRGNMEIWKSMIERGRGFHRFSSLRHLT 669 (814)
Q Consensus 595 L~l~~~~~l~~lp-~~~~~l~~L~~L~l~~--~~~~l~~--~~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~l~~L~~L~ 669 (814)
|++++|. ++.+| ..+.++++|+.|++++ .+..++. ...+++|++|++++|.+... ..+..+++|++|+
T Consensus 152 L~L~~N~-l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~------~~~~~l~~L~~L~ 224 (452)
T 3zyi_A 152 LWLRNNP-IESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKDM------PNLTPLVGLEELE 224 (452)
T ss_dssp EECCSCC-CCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCCSSC------CCCTTCTTCCEEE
T ss_pred EECCCCC-cceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCccccc------ccccccccccEEE
Confidence 9999995 55554 4788999999999997 5665554 45579999999999987654 3578999999999
Q ss_pred EecCCCCCccCCccccccCCCCCCCCCcceEEeccCCCCccccc-ccccCCCCCeEEecCCCCCCccCCCCC--cCCccE
Q 035579 670 IDGCDDDMVSFPPEDKRLGTALPLPASLTDLEIGRFPNLERLSS-SIVDLQNLTELCLRDCPKLKYFPEKGL--PSSLLR 746 (814)
Q Consensus 670 l~~~~~~l~~i~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~-~~~~l~~L~~L~l~~c~~l~~lp~~~l--~~~L~~ 746 (814)
+++| .+..++...+ ..+++|+.|++++ +.++.++. .+..+++|+.|++++| +++.+|...+ +++|++
T Consensus 225 Ls~N--~l~~~~~~~~------~~l~~L~~L~L~~-n~l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~ 294 (452)
T 3zyi_A 225 MSGN--HFPEIRPGSF------HGLSSLKKLWVMN-SQVSLIERNAFDGLASLVELNLAHN-NLSSLPHDLFTPLRYLVE 294 (452)
T ss_dssp CTTS--CCSEECGGGG------TTCTTCCEEECTT-SCCCEECTTTTTTCTTCCEEECCSS-CCSCCCTTSSTTCTTCCE
T ss_pred CcCC--cCcccCcccc------cCccCCCEEEeCC-CcCceECHHHhcCCCCCCEEECCCC-cCCccChHHhccccCCCE
Confidence 9997 6777765542 5789999999999 67887755 7889999999999995 8999988665 789999
Q ss_pred EeecCCc
Q 035579 747 LSILSCP 753 (814)
Q Consensus 747 L~i~~c~ 753 (814)
|++++||
T Consensus 295 L~L~~Np 301 (452)
T 3zyi_A 295 LHLHHNP 301 (452)
T ss_dssp EECCSSC
T ss_pred EEccCCC
Confidence 9999986
No 58
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.81 E-value=3.9e-22 Score=228.96 Aligned_cols=37 Identities=22% Similarity=0.232 Sum_probs=21.2
Q ss_pred CCceeEEEecCCcchhhhhhhcccccCCCCcccEEEEecC
Q 035579 634 PTNLHSLDIRGNMEIWKSMIERGRGFHRFSSLRHLTIDGC 673 (814)
Q Consensus 634 ~~~L~~L~l~~n~~~~~~~~~~~~~l~~l~~L~~L~l~~~ 673 (814)
+++|+.|++++|........ .....+++|++|++++|
T Consensus 455 ~~~L~~L~L~~~~i~~~~~~---~l~~~~~~L~~L~L~~n 491 (594)
T 2p1m_B 455 AKKMEMLSVAFAGDSDLGMH---HVLSGCDSLRKLEIRDC 491 (594)
T ss_dssp CTTCCEEEEESCCSSHHHHH---HHHHHCTTCCEEEEESC
T ss_pred chhccEeeccCCCCcHHHHH---HHHhcCCCcCEEECcCC
Confidence 46677777777765443321 11244667777777775
No 59
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.80 E-value=3.2e-18 Score=193.15 Aligned_cols=256 Identities=29% Similarity=0.354 Sum_probs=141.8
Q ss_pred ccccEEEeeccCCccccccccCCCCCcceEeeecCCCCcccCCCCCCCCCcEEEecccCCCCCCchhhhcCCCCCccEEE
Q 035579 365 CRLEYLILSCCEGLVKLPQSSLSLCSLREIGIYKCSSLVSFPEVALPSKLEKIHIGACDALKSLPEAWMCDTNSSLEILY 444 (814)
Q Consensus 365 ~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~L~~~~~l~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~ 444 (814)
.+++.|++++|.+ ..+|..+. ++|++|++++| .++.+|. .+++|++|++++|. +..+|. .+++|++|+
T Consensus 40 ~~l~~L~ls~n~L-~~lp~~l~--~~L~~L~L~~N-~l~~lp~--~l~~L~~L~Ls~N~-l~~lp~-----~l~~L~~L~ 107 (622)
T 3g06_A 40 NGNAVLNVGESGL-TTLPDCLP--AHITTLVIPDN-NLTSLPA--LPPELRTLEVSGNQ-LTSLPV-----LPPGLLELS 107 (622)
T ss_dssp HCCCEEECCSSCC-SCCCSCCC--TTCSEEEECSC-CCSCCCC--CCTTCCEEEECSCC-CSCCCC-----CCTTCCEEE
T ss_pred CCCcEEEecCCCc-CccChhhC--CCCcEEEecCC-CCCCCCC--cCCCCCEEEcCCCc-CCcCCC-----CCCCCCEEE
Confidence 4588888888876 46676554 78888888885 5666765 57888888888887 666665 357888888
Q ss_pred EecCCCCcccccccCcCccceeeeccccCCcccccccCCCCCCCCCCCCCCccEEeecCCCCcccccccCCCcccccEEE
Q 035579 445 IEGCRSLTYIAAVQLPSSLKNLQIHGCYNIKTLTVEEGIPSSSSSRYTSSILEHLSIVGCPSLTCIFSKNELPATLESLS 524 (814)
Q Consensus 445 l~~~~~l~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~ 524 (814)
+++|. ++.++. .+++|+.|+++++ .++ .+|. .+++|+.|+
T Consensus 108 Ls~N~-l~~l~~--~l~~L~~L~L~~N-~l~------~lp~------------------------------~l~~L~~L~ 147 (622)
T 3g06_A 108 IFSNP-LTHLPA--LPSGLCKLWIFGN-QLT------SLPV------------------------------LPPGLQELS 147 (622)
T ss_dssp ECSCC-CCCCCC--CCTTCCEEECCSS-CCS------CCCC------------------------------CCTTCCEEE
T ss_pred CcCCc-CCCCCC--CCCCcCEEECCCC-CCC------cCCC------------------------------CCCCCCEEE
Confidence 88753 443332 3333444444333 111 1111 012344444
Q ss_pred EeccCCcchhhHhhcCCCCcceEeecccCCcccccccCCCCCCccEEEecCCCCceecCCCCCCCCCcceEeeccccccc
Q 035579 525 VYKCSKLESIAERLDNNTSLETIGINFCENLKILPSGLHNLRQLREITIQRCGNLVSFPEGGLPCAKLSELRIFQCERLE 604 (814)
Q Consensus 525 l~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~~~~l~ 604 (814)
+++|... .+|. .+.+|+.|++++|.+.+ +| ..+++|+.|++++| .+..+|.. +++|+.|++++|
T Consensus 148 Ls~N~l~-~l~~---~~~~L~~L~L~~N~l~~-l~---~~~~~L~~L~Ls~N-~l~~l~~~---~~~L~~L~L~~N---- 211 (622)
T 3g06_A 148 VSDNQLA-SLPA---LPSELCKLWAYNNQLTS-LP---MLPSGLQELSVSDN-QLASLPTL---PSELYKLWAYNN---- 211 (622)
T ss_dssp CCSSCCS-CCCC---CCTTCCEEECCSSCCSC-CC---CCCTTCCEEECCSS-CCSCCCCC---CTTCCEEECCSS----
T ss_pred CcCCcCC-CcCC---ccCCCCEEECCCCCCCC-Cc---ccCCCCcEEECCCC-CCCCCCCc---cchhhEEECcCC----
Confidence 4443222 1221 12344445555444443 22 22344444555444 23333321 134444444444
Q ss_pred cccccccCCCCcceEEecCccCccccCCCCCceeEEEecCCcchhhhhhhcccccCCCCcccEEEEecCCCCCccCCccc
Q 035579 605 ALPKGLHNLTSLQELTIGGALPSLEEDGLPTNLHSLDIRGNMEIWKSMIERGRGFHRFSSLRHLTIDGCDDDMVSFPPED 684 (814)
Q Consensus 605 ~lp~~~~~l~~L~~L~l~~~~~~l~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~l~~i~~~~ 684 (814)
.+..++. .+++|++|++++|.+...+ ..+++|+.|++++| .+..+|.
T Consensus 212 -------------------~l~~l~~--~~~~L~~L~Ls~N~L~~lp--------~~l~~L~~L~Ls~N--~L~~lp~-- 258 (622)
T 3g06_A 212 -------------------RLTSLPA--LPSGLKELIVSGNRLTSLP--------VLPSELKELMVSGN--RLTSLPM-- 258 (622)
T ss_dssp -------------------CCSSCCC--CCTTCCEEECCSSCCSCCC--------CCCTTCCEEECCSS--CCSCCCC--
T ss_pred -------------------cccccCC--CCCCCCEEEccCCccCcCC--------CCCCcCcEEECCCC--CCCcCCc--
Confidence 3333332 2356666666666544321 24466777777775 5556665
Q ss_pred cccCCCCCCCCCcceEEeccCCCCcccccccccCCCCCeEEecCCC
Q 035579 685 KRLGTALPLPASLTDLEIGRFPNLERLSSSIVDLQNLTELCLRDCP 730 (814)
Q Consensus 685 ~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~l~~L~~L~l~~c~ 730 (814)
.+++|+.|++++ |.++.+|..+..+++|+.|++++|+
T Consensus 259 --------~~~~L~~L~Ls~-N~L~~lp~~l~~l~~L~~L~L~~N~ 295 (622)
T 3g06_A 259 --------LPSGLLSLSVYR-NQLTRLPESLIHLSSETTVNLEGNP 295 (622)
T ss_dssp --------CCTTCCEEECCS-SCCCSCCGGGGGSCTTCEEECCSCC
T ss_pred --------ccccCcEEeCCC-CCCCcCCHHHhhccccCEEEecCCC
Confidence 246777777777 5677777777777777777777753
No 60
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.80 E-value=9.3e-19 Score=192.17 Aligned_cols=220 Identities=18% Similarity=0.214 Sum_probs=186.0
Q ss_pred CcccccEEEEeccCCcchhhHhhcCCCCcceEeecccCCcccccccCCCCCCccEEEecCCCCceecCC-CCCCCCCcce
Q 035579 516 LPATLESLSVYKCSKLESIAERLDNNTSLETIGINFCENLKILPSGLHNLRQLREITIQRCGNLVSFPE-GGLPCAKLSE 594 (814)
Q Consensus 516 ~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~-~~~~l~~L~~ 594 (814)
++++++.|++++|......+..|.++++|++|++++|.+....+..+..+++|++|++++| .++.++. .+..+++|++
T Consensus 62 ~~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~ 140 (440)
T 3zyj_A 62 ISTNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDN-RLTTIPNGAFVYLSKLKE 140 (440)
T ss_dssp CCTTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCSS-CCSSCCTTTSCSCSSCCE
T ss_pred CCCCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECCCC-cCCeeCHhHhhccccCce
Confidence 3457889999998877777788999999999999999999888889999999999999998 6667765 5888999999
Q ss_pred Eeecccccccccc-ccccCCCCcceEEecC--ccCcccc--CCCCCceeEEEecCCcchhhhhhhcccccCCCCcccEEE
Q 035579 595 LRIFQCERLEALP-KGLHNLTSLQELTIGG--ALPSLEE--DGLPTNLHSLDIRGNMEIWKSMIERGRGFHRFSSLRHLT 669 (814)
Q Consensus 595 L~l~~~~~l~~lp-~~~~~l~~L~~L~l~~--~~~~l~~--~~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~l~~L~~L~ 669 (814)
|++++|. ++.+| ..+..+++|+.|++++ .+..++. ...+++|++|++++|.+... ..+..+++|++|+
T Consensus 141 L~L~~N~-i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~------~~~~~l~~L~~L~ 213 (440)
T 3zyj_A 141 LWLRNNP-IESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLREI------PNLTPLIKLDELD 213 (440)
T ss_dssp EECCSCC-CCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCCSSC------CCCTTCSSCCEEE
T ss_pred eeCCCCc-ccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCcCccc------cccCCCcccCEEE
Confidence 9999995 55554 4788999999999997 5555554 45579999999999987654 3578999999999
Q ss_pred EecCCCCCccCCccccccCCCCCCCCCcceEEeccCCCCccccc-ccccCCCCCeEEecCCCCCCccCCCCC--cCCccE
Q 035579 670 IDGCDDDMVSFPPEDKRLGTALPLPASLTDLEIGRFPNLERLSS-SIVDLQNLTELCLRDCPKLKYFPEKGL--PSSLLR 746 (814)
Q Consensus 670 l~~~~~~l~~i~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~-~~~~l~~L~~L~l~~c~~l~~lp~~~l--~~~L~~ 746 (814)
+++| .+..++...+ ..+++|+.|++++ +.++.++. .+..+++|+.|++++| +++.+|...+ +++|++
T Consensus 214 Ls~N--~l~~~~~~~~------~~l~~L~~L~L~~-n~l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~ 283 (440)
T 3zyj_A 214 LSGN--HLSAIRPGSF------QGLMHLQKLWMIQ-SQIQVIERNAFDNLQSLVEINLAHN-NLTLLPHDLFTPLHHLER 283 (440)
T ss_dssp CTTS--CCCEECTTTT------TTCTTCCEEECTT-CCCCEECTTSSTTCTTCCEEECTTS-CCCCCCTTTTSSCTTCCE
T ss_pred CCCC--ccCccChhhh------ccCccCCEEECCC-CceeEEChhhhcCCCCCCEEECCCC-CCCccChhHhccccCCCE
Confidence 9997 7777755442 5789999999999 78888866 7889999999999994 8999988665 789999
Q ss_pred EeecCCc
Q 035579 747 LSILSCP 753 (814)
Q Consensus 747 L~i~~c~ 753 (814)
|++++||
T Consensus 284 L~L~~Np 290 (440)
T 3zyj_A 284 IHLHHNP 290 (440)
T ss_dssp EECCSSC
T ss_pred EEcCCCC
Confidence 9999987
No 61
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.80 E-value=6.8e-20 Score=191.61 Aligned_cols=235 Identities=12% Similarity=0.087 Sum_probs=147.7
Q ss_pred ccccEEEeeccCCccccccccCCCCCcceEeeecCCCCcccCCCCCCCCCcEEEecccCCCCCCchhhhcCCCCCccEEE
Q 035579 365 CRLEYLILSCCEGLVKLPQSSLSLCSLREIGIYKCSSLVSFPEVALPSKLEKIHIGACDALKSLPEAWMCDTNSSLEILY 444 (814)
Q Consensus 365 ~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~L~~~~~l~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~ 444 (814)
++|++|++++|.+....|..+..+++|++|++++|. ++..+++..+++|++|++++|. +..++. .++|++|+
T Consensus 34 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~~~~l~~L~~L~Ls~n~-l~~l~~------~~~L~~L~ 105 (317)
T 3o53_A 34 WNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNV-LYETLDLESLSTLRTLDLNNNY-VQELLV------GPSIETLH 105 (317)
T ss_dssp GGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSC-CEEEEEETTCTTCCEEECCSSE-EEEEEE------CTTCCEEE
T ss_pred CCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCc-CCcchhhhhcCCCCEEECcCCc-cccccC------CCCcCEEE
Confidence 678888888887766666677788888888888754 3434446667777777777776 443332 35666666
Q ss_pred EecCCCCcccccccCcCccceeeeccccCCcccccccCCCCCCCCCCCCCCccEEeecCCCCcccccccCCCcccccEEE
Q 035579 445 IEGCRSLTYIAAVQLPSSLKNLQIHGCYNIKTLTVEEGIPSSSSSRYTSSILEHLSIVGCPSLTCIFSKNELPATLESLS 524 (814)
Q Consensus 445 l~~~~~l~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~ 524 (814)
+++|. ++.++.. .+++|+.|+
T Consensus 106 l~~n~-l~~~~~~----------------------------------------------------------~~~~L~~L~ 126 (317)
T 3o53_A 106 AANNN-ISRVSCS----------------------------------------------------------RGQGKKNIY 126 (317)
T ss_dssp CCSSC-CSEEEEC----------------------------------------------------------CCSSCEEEE
T ss_pred CCCCc-cCCcCcc----------------------------------------------------------ccCCCCEEE
Confidence 66643 1111100 012455666
Q ss_pred EeccCCcchhhHhhcCCCCcceEeecccCCcccccccC-CCCCCccEEEecCCCCceecCCCCCCCCCcceEeecccccc
Q 035579 525 VYKCSKLESIAERLDNNTSLETIGINFCENLKILPSGL-HNLRQLREITIQRCGNLVSFPEGGLPCAKLSELRIFQCERL 603 (814)
Q Consensus 525 l~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~-~~l~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~~~~l 603 (814)
+++|......+..+..+++|++|++++|.+.+..+..+ ..+++|++|++++| .+..++.. ..+++|++|++++| .+
T Consensus 127 l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~-~~l~~L~~L~Ls~N-~l 203 (317)
T 3o53_A 127 LANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYN-FIYDVKGQ-VVFAKLKTLDLSSN-KL 203 (317)
T ss_dssp CCSSCCCSGGGBCTGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTS-CCCEEECC-CCCTTCCEEECCSS-CC
T ss_pred CCCCCCCCccchhhhccCCCCEEECCCCCCCcccHHHHhhccCcCCEEECCCC-cCcccccc-cccccCCEEECCCC-cC
Confidence 66655555455566777777777777777776655555 35777888888777 45555432 33677888888877 55
Q ss_pred ccccccccCCCCcceEEecC-ccCcccc-CCCCCceeEEEecCCcchhhhhhhcccccCCCCcccEEEEec
Q 035579 604 EALPKGLHNLTSLQELTIGG-ALPSLEE-DGLPTNLHSLDIRGNMEIWKSMIERGRGFHRFSSLRHLTIDG 672 (814)
Q Consensus 604 ~~lp~~~~~l~~L~~L~l~~-~~~~l~~-~~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~l~~L~~L~l~~ 672 (814)
+.+|..+..+++|+.|++++ .+..++. ...+++|+.|++++|+....... ..+..+++|+.+++++
T Consensus 204 ~~l~~~~~~l~~L~~L~L~~N~l~~l~~~~~~l~~L~~L~l~~N~~~~~~~~---~~~~~~~~L~~l~l~~ 271 (317)
T 3o53_A 204 AFMGPEFQSAAGVTWISLRNNKLVLIEKALRFSQNLEHFDLRGNGFHCGTLR---DFFSKNQRVQTVAKQT 271 (317)
T ss_dssp CEECGGGGGGTTCSEEECTTSCCCEECTTCCCCTTCCEEECTTCCCBHHHHH---HHHHTCHHHHHHHHHH
T ss_pred CcchhhhcccCcccEEECcCCcccchhhHhhcCCCCCEEEccCCCccCcCHH---HHHhccccceEEECCC
Confidence 56666677777777777777 5555544 34457777777777776622221 3456666677766664
No 62
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.79 E-value=1.2e-21 Score=225.07 Aligned_cols=122 Identities=14% Similarity=0.193 Sum_probs=56.2
Q ss_pred hhhcCCCCCeEEEecCCCcccchh------hHHHHHHHHhhhccccccEEEeeccCCccccccccC-CCCCcceEeeecC
Q 035579 327 LLQDICSLRRLTIRSCPKLQSLVA------EEEKDQQQQLCELSCRLEYLILSCCEGLVKLPQSSL-SLCSLREIGIYKC 399 (814)
Q Consensus 327 ~~~~l~~L~~L~l~~~~~l~~l~~------~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~~~~~-~l~~L~~L~L~~~ 399 (814)
.+..+++|++|++++|+.+..+.. .....++..+...+++|++|++++|.+....+..+. .+++|++|++++|
T Consensus 61 ~~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~L~~~ 140 (594)
T 2p1m_B 61 VIRRFPKVRSVELKGKPHFADFNLVPDGWGGYVYPWIEAMSSSYTWLEEIRLKRMVVTDDCLELIAKSFKNFKVLVLSSC 140 (594)
T ss_dssp HHHHCTTCCEEEEECSCGGGGGTCSCTTSCCBCHHHHHHHHHHCTTCCEEEEESCBCCHHHHHHHHHHCTTCCEEEEESC
T ss_pred HHhhCCCceEEeccCCCchhhcccccccccchhhHHHHHHHHhCCCCCeEEeeCcEEcHHHHHHHHHhCCCCcEEeCCCc
Confidence 345566666666666554432210 000111222222335666666666654443333333 4566666666665
Q ss_pred CCCcc--cCCCC-CCCCCcEEEecccCCCCCCchhhh---cCCCCCccEEEEecCC
Q 035579 400 SSLVS--FPEVA-LPSKLEKIHIGACDALKSLPEAWM---CDTNSSLEILYIEGCR 449 (814)
Q Consensus 400 ~~l~~--~~~~~-~~~~L~~L~l~~~~~l~~~~~~~~---~~~l~~L~~L~l~~~~ 449 (814)
..++. ++.+. .+++|++|++++|. +......++ ...+++|++|++++|.
T Consensus 141 ~~~~~~~l~~~~~~~~~L~~L~L~~~~-i~~~~~~~l~~~~~~~~~L~~L~l~~~~ 195 (594)
T 2p1m_B 141 EGFSTDGLAAIAATCRNLKELDLRESD-VDDVSGHWLSHFPDTYTSLVSLNISCLA 195 (594)
T ss_dssp EEEEHHHHHHHHHHCTTCCEEECTTCE-EECCCGGGGGGSCTTCCCCCEEECTTCC
T ss_pred CCCCHHHHHHHHHhCCCCCEEeCcCCc-cCCcchHHHHHHhhcCCcCcEEEecccC
Confidence 44333 22222 35566666666665 222111100 0345566666666554
No 63
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.78 E-value=1.2e-18 Score=181.52 Aligned_cols=222 Identities=17% Similarity=0.144 Sum_probs=163.1
Q ss_pred cccccEEEEeccCCcchhhHhhcCCCCcceEeecccCCcc--cccccCCCCCCccEEEecCCCCceecCCCCCCCCCcce
Q 035579 517 PATLESLSVYKCSKLESIAERLDNNTSLETIGINFCENLK--ILPSGLHNLRQLREITIQRCGNLVSFPEGGLPCAKLSE 594 (814)
Q Consensus 517 ~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~--~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~l~~L~~ 594 (814)
++++++|++++|......+..+.++++|++|++++|.+.. ..+..+..+++|++|++++| .+..+|..+..+++|++
T Consensus 27 ~~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n-~i~~l~~~~~~l~~L~~ 105 (306)
T 2z66_A 27 PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFN-GVITMSSNFLGLEQLEH 105 (306)
T ss_dssp CTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEECCSC-SEEEEEEEEETCTTCCE
T ss_pred CCCCCEEECCCCccCccCHhHhhccccCCEEECCCCccCcccCcccccccccccCEEECCCC-ccccChhhcCCCCCCCE
Confidence 3467777777766553333446788888888888887763 23455666788888888887 56667777777888888
Q ss_pred Eeecccccccccc--ccccCCCCcceEEecC-ccCcccc--CCCCCceeEEEecCCcchhhhhhhcccccCCCCcccEEE
Q 035579 595 LRIFQCERLEALP--KGLHNLTSLQELTIGG-ALPSLEE--DGLPTNLHSLDIRGNMEIWKSMIERGRGFHRFSSLRHLT 669 (814)
Q Consensus 595 L~l~~~~~l~~lp--~~~~~l~~L~~L~l~~-~~~~l~~--~~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~l~~L~~L~ 669 (814)
|++++| .++.++ ..+..+++|++|++++ .+..... ...+++|++|++++|....... +..+..+++|++|+
T Consensus 106 L~l~~n-~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~---~~~~~~l~~L~~L~ 181 (306)
T 2z66_A 106 LDFQHS-NLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFL---PDIFTELRNLTFLD 181 (306)
T ss_dssp EECTTS-EEESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEEECTTCEEGGGEE---CSCCTTCTTCCEEE
T ss_pred EECCCC-cccccccchhhhhccCCCEEECCCCcCCccchhhcccCcCCCEEECCCCccccccc---hhHHhhCcCCCEEE
Confidence 888887 444444 3677888888888887 4443332 3456889999999998765222 15788999999999
Q ss_pred EecCCCCCccCCccccccCCCCCCCCCcceEEeccCCCCccccc-ccccCCCCCeEEecCCCCCCccCCCCC---cCCcc
Q 035579 670 IDGCDDDMVSFPPEDKRLGTALPLPASLTDLEIGRFPNLERLSS-SIVDLQNLTELCLRDCPKLKYFPEKGL---PSSLL 745 (814)
Q Consensus 670 l~~~~~~l~~i~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~-~~~~l~~L~~L~l~~c~~l~~lp~~~l---~~~L~ 745 (814)
+++| .+..++... +..+++|++|++++ +.++.++. .+..+++|+.|++++| .++..+...+ +++|+
T Consensus 182 Ls~n--~l~~~~~~~------~~~l~~L~~L~L~~-N~l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~~~~~L~ 251 (306)
T 2z66_A 182 LSQC--QLEQLSPTA------FNSLSSLQVLNMSH-NNFFSLDTFPYKCLNSLQVLDYSLN-HIMTSKKQELQHFPSSLA 251 (306)
T ss_dssp CTTS--CCCEECTTT------TTTCTTCCEEECTT-SCCSBCCSGGGTTCTTCCEEECTTS-CCCBCSSSSCCCCCTTCC
T ss_pred CCCC--CcCCcCHHH------hcCCCCCCEEECCC-CccCccChhhccCcccCCEeECCCC-CCcccCHHHHHhhhccCC
Confidence 9997 666664433 25689999999999 67888876 7788999999999996 5666654333 46999
Q ss_pred EEeecCCc
Q 035579 746 RLSILSCP 753 (814)
Q Consensus 746 ~L~i~~c~ 753 (814)
+|++++|+
T Consensus 252 ~L~L~~N~ 259 (306)
T 2z66_A 252 FLNLTQND 259 (306)
T ss_dssp EEECTTCC
T ss_pred EEEccCCC
Confidence 99999986
No 64
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.78 E-value=8.2e-18 Score=175.16 Aligned_cols=176 Identities=18% Similarity=0.120 Sum_probs=93.6
Q ss_pred ccEEEEeccCCcchhhHhhcCCCCcceEeecccCCccccc-ccCCCCCCccEEEecCCCCceecCCCCCCCCCcceEeec
Q 035579 520 LESLSVYKCSKLESIAERLDNNTSLETIGINFCENLKILP-SGLHNLRQLREITIQRCGNLVSFPEGGLPCAKLSELRIF 598 (814)
Q Consensus 520 L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~-~~~~~l~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~ 598 (814)
|++|++++|.. ..++..+..+++|++|++++|.+.+..+ ..+..+++|++|++++|......+..+..+++|++|+++
T Consensus 80 L~~L~Ls~n~i-~~l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~ 158 (306)
T 2z66_A 80 LKYLDLSFNGV-ITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMA 158 (306)
T ss_dssp CCEEECCSCSE-EEEEEEEETCTTCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEEECT
T ss_pred cCEEECCCCcc-ccChhhcCCCCCCCEEECCCCcccccccchhhhhccCCCEEECCCCcCCccchhhcccCcCCCEEECC
Confidence 44444444322 2344445566666666666666655433 456666677777776664433344455566667777776
Q ss_pred cccccc-cccccccCCCCcceEEecCccCccccCCCCCceeEEEecCCcchhhhhhhcccccCCCCcccEEEEecCCCCC
Q 035579 599 QCERLE-ALPKGLHNLTSLQELTIGGALPSLEEDGLPTNLHSLDIRGNMEIWKSMIERGRGFHRFSSLRHLTIDGCDDDM 677 (814)
Q Consensus 599 ~~~~l~-~lp~~~~~l~~L~~L~l~~~~~~l~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~l 677 (814)
+|.... .+|..+..+++|+.|++++ |.+....+ ..+..+++|++|++++| .+
T Consensus 159 ~n~l~~~~~~~~~~~l~~L~~L~Ls~---------------------n~l~~~~~----~~~~~l~~L~~L~L~~N--~l 211 (306)
T 2z66_A 159 GNSFQENFLPDIFTELRNLTFLDLSQ---------------------CQLEQLSP----TAFNSLSSLQVLNMSHN--NF 211 (306)
T ss_dssp TCEEGGGEECSCCTTCTTCCEEECTT---------------------SCCCEECT----TTTTTCTTCCEEECTTS--CC
T ss_pred CCccccccchhHHhhCcCCCEEECCC---------------------CCcCCcCH----HHhcCCCCCCEEECCCC--cc
Confidence 664332 2455555444444444443 33322211 34455566666666655 44
Q ss_pred ccCCccccccCCCCCCCCCcceEEeccCCCCccc-ccccccCC-CCCeEEecCCC
Q 035579 678 VSFPPEDKRLGTALPLPASLTDLEIGRFPNLERL-SSSIVDLQ-NLTELCLRDCP 730 (814)
Q Consensus 678 ~~i~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l-~~~~~~l~-~L~~L~l~~c~ 730 (814)
..++.... ..+++|+.|++++ +.++.. |..+..++ +|++|++++++
T Consensus 212 ~~~~~~~~------~~l~~L~~L~L~~-N~l~~~~~~~~~~~~~~L~~L~L~~N~ 259 (306)
T 2z66_A 212 FSLDTFPY------KCLNSLQVLDYSL-NHIMTSKKQELQHFPSSLAFLNLTQND 259 (306)
T ss_dssp SBCCSGGG------TTCTTCCEEECTT-SCCCBCSSSSCCCCCTTCCEEECTTCC
T ss_pred CccChhhc------cCcccCCEeECCC-CCCcccCHHHHHhhhccCCEEEccCCC
Confidence 44444321 3456666666666 344443 33555663 77777777753
No 65
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.78 E-value=1.9e-17 Score=186.82 Aligned_cols=254 Identities=26% Similarity=0.339 Sum_probs=170.1
Q ss_pred CcceEeeecCCCCcccCCCCCCCCCcEEEecccCCCCCCchhhhcCCCCCccEEEEecCCCCcccccccCcCccceeeec
Q 035579 390 SLREIGIYKCSSLVSFPEVALPSKLEKIHIGACDALKSLPEAWMCDTNSSLEILYIEGCRSLTYIAAVQLPSSLKNLQIH 469 (814)
Q Consensus 390 ~L~~L~L~~~~~l~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~L~~L~l~ 469 (814)
+++.|+++++ .++.+|... +++|+.|++++|. +..+|. .+++|++|++++|. ++.++. .+++|+.
T Consensus 41 ~l~~L~ls~n-~L~~lp~~l-~~~L~~L~L~~N~-l~~lp~-----~l~~L~~L~Ls~N~-l~~lp~--~l~~L~~---- 105 (622)
T 3g06_A 41 GNAVLNVGES-GLTTLPDCL-PAHITTLVIPDNN-LTSLPA-----LPPELRTLEVSGNQ-LTSLPV--LPPGLLE---- 105 (622)
T ss_dssp CCCEEECCSS-CCSCCCSCC-CTTCSEEEECSCC-CSCCCC-----CCTTCCEEEECSCC-CSCCCC--CCTTCCE----
T ss_pred CCcEEEecCC-CcCccChhh-CCCCcEEEecCCC-CCCCCC-----cCCCCCEEEcCCCc-CCcCCC--CCCCCCE----
Confidence 5788888885 566776422 3788888888887 666665 25788888888864 443332 2222333
Q ss_pred cccCCcccccccCCCCCCCCCCCCCCccEEeecCCCCcccccccCCCcccccEEEEeccCCcchhhHhhcCCCCcceEee
Q 035579 470 GCYNIKTLTVEEGIPSSSSSRYTSSILEHLSIVGCPSLTCIFSKNELPATLESLSVYKCSKLESIAERLDNNTSLETIGI 549 (814)
Q Consensus 470 ~~~~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L 549 (814)
|++++|... .+|. .+++|+.|++
T Consensus 106 -----------------------------------------------------L~Ls~N~l~-~l~~---~l~~L~~L~L 128 (622)
T 3g06_A 106 -----------------------------------------------------LSIFSNPLT-HLPA---LPSGLCKLWI 128 (622)
T ss_dssp -----------------------------------------------------EEECSCCCC-CCCC---CCTTCCEEEC
T ss_pred -----------------------------------------------------EECcCCcCC-CCCC---CCCCcCEEEC
Confidence 333332211 1221 3345555555
Q ss_pred cccCCcccccccCCCCCCccEEEecCCCCceecCCCCCCCCCcceEeeccccccccccccccCCCCcceEEecC-ccCcc
Q 035579 550 NFCENLKILPSGLHNLRQLREITIQRCGNLVSFPEGGLPCAKLSELRIFQCERLEALPKGLHNLTSLQELTIGG-ALPSL 628 (814)
Q Consensus 550 ~~n~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~~~~l~~lp~~~~~l~~L~~L~l~~-~~~~l 628 (814)
++|.+.. +|.. +++|++|++++| .+..+|.. +++|+.|++++| .++.+| ..+++|+.|++++ .+..+
T Consensus 129 ~~N~l~~-lp~~---l~~L~~L~Ls~N-~l~~l~~~---~~~L~~L~L~~N-~l~~l~---~~~~~L~~L~Ls~N~l~~l 196 (622)
T 3g06_A 129 FGNQLTS-LPVL---PPGLQELSVSDN-QLASLPAL---PSELCKLWAYNN-QLTSLP---MLPSGLQELSVSDNQLASL 196 (622)
T ss_dssp CSSCCSC-CCCC---CTTCCEEECCSS-CCSCCCCC---CTTCCEEECCSS-CCSCCC---CCCTTCCEEECCSSCCSCC
T ss_pred CCCCCCc-CCCC---CCCCCEEECcCC-cCCCcCCc---cCCCCEEECCCC-CCCCCc---ccCCCCcEEECCCCCCCCC
Confidence 5555443 2222 366677777766 44445432 346777777766 455565 3456777777777 55555
Q ss_pred ccCCCCCceeEEEecCCcchhhhhhhcccccCCCCcccEEEEecCCCCCccCCccccccCCCCCCCCCcceEEeccCCCC
Q 035579 629 EEDGLPTNLHSLDIRGNMEIWKSMIERGRGFHRFSSLRHLTIDGCDDDMVSFPPEDKRLGTALPLPASLTDLEIGRFPNL 708 (814)
Q Consensus 629 ~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~l~~i~~~~~~~~~~~~~~~~L~~L~l~~~~~l 708 (814)
+. .+++|+.|++++|.+.... ..+++|+.|++++| .+..+|. .+++|+.|++++ |.+
T Consensus 197 ~~--~~~~L~~L~L~~N~l~~l~--------~~~~~L~~L~Ls~N--~L~~lp~----------~l~~L~~L~Ls~-N~L 253 (622)
T 3g06_A 197 PT--LPSELYKLWAYNNRLTSLP--------ALPSGLKELIVSGN--RLTSLPV----------LPSELKELMVSG-NRL 253 (622)
T ss_dssp CC--CCTTCCEEECCSSCCSSCC--------CCCTTCCEEECCSS--CCSCCCC----------CCTTCCEEECCS-SCC
T ss_pred CC--ccchhhEEECcCCcccccC--------CCCCCCCEEEccCC--ccCcCCC----------CCCcCcEEECCC-CCC
Confidence 43 3589999999999876532 13589999999998 7788883 368999999999 789
Q ss_pred cccccccccCCCCCeEEecCCCCCCccCCCCC-cCCccEEeecCCch
Q 035579 709 ERLSSSIVDLQNLTELCLRDCPKLKYFPEKGL-PSSLLRLSILSCPL 754 (814)
Q Consensus 709 ~~l~~~~~~l~~L~~L~l~~c~~l~~lp~~~l-~~~L~~L~i~~c~~ 754 (814)
+.+|. .+++|+.|++++| +++.+|.... +++|+.|++++|+.
T Consensus 254 ~~lp~---~~~~L~~L~Ls~N-~L~~lp~~l~~l~~L~~L~L~~N~l 296 (622)
T 3g06_A 254 TSLPM---LPSGLLSLSVYRN-QLTRLPESLIHLSSETTVNLEGNPL 296 (622)
T ss_dssp SCCCC---CCTTCCEEECCSS-CCCSCCGGGGGSCTTCEEECCSCCC
T ss_pred CcCCc---ccccCcEEeCCCC-CCCcCCHHHhhccccCEEEecCCCC
Confidence 99996 6789999999995 7889986422 78999999999973
No 66
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.77 E-value=1.1e-18 Score=193.30 Aligned_cols=242 Identities=12% Similarity=0.088 Sum_probs=165.3
Q ss_pred HHHhhhccccccEEEeeccCCccccccccCCCCCcceEeeecCCCCcccCCCCCCCCCcEEEecccCCCCCCchhhhcCC
Q 035579 357 QQQLCELSCRLEYLILSCCEGLVKLPQSSLSLCSLREIGIYKCSSLVSFPEVALPSKLEKIHIGACDALKSLPEAWMCDT 436 (814)
Q Consensus 357 ~~~l~~~~~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~L~~~~~l~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~ 436 (814)
+..+...+++|++|+|++|.+.+..|..+..+++|++|+|++|. ++..+++..+++|++|++++|. +..++.
T Consensus 26 l~~l~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~-l~~~~~l~~l~~L~~L~Ls~N~-l~~l~~------ 97 (487)
T 3oja_A 26 LASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNV-LYETLDLESLSTLRTLDLNNNY-VQELLV------ 97 (487)
T ss_dssp HHTTSTTGGGCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSC-CEEEEECTTCTTCCEEECCSSE-EEEEEE------
T ss_pred HHHhcccCCCccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCC-CCCCcccccCCCCCEEEecCCc-CCCCCC------
Confidence 33333334689999999998877777788889999999998864 4444446677888888888876 444432
Q ss_pred CCCccEEEEecCCCCcccccccCcCccceeeeccccCCcccccccCCCCCCCCCCCCCCccEEeecCCCCcccccccCCC
Q 035579 437 NSSLEILYIEGCRSLTYIAAVQLPSSLKNLQIHGCYNIKTLTVEEGIPSSSSSRYTSSILEHLSIVGCPSLTCIFSKNEL 516 (814)
Q Consensus 437 l~~L~~L~l~~~~~l~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~ 516 (814)
.++|++|++++|. ++.++.. .
T Consensus 98 ~~~L~~L~L~~N~-l~~~~~~----------------------------------------------------------~ 118 (487)
T 3oja_A 98 GPSIETLHAANNN-ISRVSCS----------------------------------------------------------R 118 (487)
T ss_dssp CTTCCEEECCSSC-CCCEEEC----------------------------------------------------------C
T ss_pred CCCcCEEECcCCc-CCCCCcc----------------------------------------------------------c
Confidence 2566777776653 1111100 1
Q ss_pred cccccEEEEeccCCcchhhHhhcCCCCcceEeecccCCcccccccCC-CCCCccEEEecCCCCceecCCCCCCCCCcceE
Q 035579 517 PATLESLSVYKCSKLESIAERLDNNTSLETIGINFCENLKILPSGLH-NLRQLREITIQRCGNLVSFPEGGLPCAKLSEL 595 (814)
Q Consensus 517 ~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~-~l~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L 595 (814)
+++|+.|++++|......|..++.+++|+.|++++|.+.+..|..+. .+++|++|++++| .+..+|. ...+++|+.|
T Consensus 119 l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N-~l~~~~~-~~~l~~L~~L 196 (487)
T 3oja_A 119 GQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYN-FIYDVKG-QVVFAKLKTL 196 (487)
T ss_dssp CSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTS-CCCEEEC-CCCCTTCCEE
T ss_pred cCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCcccEEecCCC-ccccccc-cccCCCCCEE
Confidence 13566777777666666666778888888888888888887777665 6888888888887 4555553 3347788888
Q ss_pred eeccccccccccccccCCCCcceEEecC-ccCcccc-CCCCCceeEEEecCCcchhhhhhhcccccCCCCcccEEEEe
Q 035579 596 RIFQCERLEALPKGLHNLTSLQELTIGG-ALPSLEE-DGLPTNLHSLDIRGNMEIWKSMIERGRGFHRFSSLRHLTID 671 (814)
Q Consensus 596 ~l~~~~~l~~lp~~~~~l~~L~~L~l~~-~~~~l~~-~~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~l~~L~~L~l~ 671 (814)
++++| .++.+|..+..+++|+.|++++ .+..+|. ...+++|+.|++++|+......+ ..+..++.|+.++++
T Consensus 197 ~Ls~N-~l~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~l~~l~~L~~L~l~~N~l~c~~~~---~~~~~l~~L~~l~~~ 270 (487)
T 3oja_A 197 DLSSN-KLAFMGPEFQSAAGVTWISLRNNKLVLIEKALRFSQNLEHFDLRGNGFHCGTLR---DFFSKNQRVQTVAKQ 270 (487)
T ss_dssp ECCSS-CCCEECGGGGGGTTCSEEECTTSCCCEECTTCCCCTTCCEEECTTCCBCHHHHH---HHHTTCHHHHHHHHH
T ss_pred ECCCC-CCCCCCHhHcCCCCccEEEecCCcCcccchhhccCCCCCEEEcCCCCCcCcchH---HHHHhCCCCcEEecc
Confidence 88888 5666666677888888888887 6666554 44567888888888877632221 345666777766664
No 67
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.77 E-value=4.7e-18 Score=174.97 Aligned_cols=201 Identities=21% Similarity=0.247 Sum_probs=114.6
Q ss_pred cccccEEEEeccCCcchhhHhhcCCCCcceEeecccCCcccccccCCCCCCccEEEecCCCCceec-CCCCCCCCCcceE
Q 035579 517 PATLESLSVYKCSKLESIAERLDNNTSLETIGINFCENLKILPSGLHNLRQLREITIQRCGNLVSF-PEGGLPCAKLSEL 595 (814)
Q Consensus 517 ~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~-~~~~~~l~~L~~L 595 (814)
+++++.|++++|......+..+..+++|++|++++|.+.+..|..+..+++|++|++++|..++.+ |..+..+++|++|
T Consensus 31 ~~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~l~~~~~~~~~~l~~L~~L 110 (285)
T 1ozn_A 31 PAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTL 110 (285)
T ss_dssp CTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTCCCCCTTTTTTCTTCCEE
T ss_pred CCCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCCCCccccCHHHhcCCcCCCEE
Confidence 456777777776665555566777777777777777777666777777777777777777545555 4456667777777
Q ss_pred eeccccccccccccccCCCCcceEEecC-ccCccccCCCCCceeEEEecCCcchhhhhhhcccccCCCCcccEEEEecCC
Q 035579 596 RIFQCERLEALPKGLHNLTSLQELTIGG-ALPSLEEDGLPTNLHSLDIRGNMEIWKSMIERGRGFHRFSSLRHLTIDGCD 674 (814)
Q Consensus 596 ~l~~~~~l~~lp~~~~~l~~L~~L~l~~-~~~~l~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~l~~L~~L~l~~~~ 674 (814)
++++|......|..+..+++|++|++++ .+..++. ..+..+++|++|++++|
T Consensus 111 ~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~--------------------------~~~~~l~~L~~L~l~~n- 163 (285)
T 1ozn_A 111 HLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPD--------------------------DTFRDLGNLTHLFLHGN- 163 (285)
T ss_dssp ECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCT--------------------------TTTTTCTTCCEEECCSS-
T ss_pred ECCCCcCCEECHhHhhCCcCCCEEECCCCcccccCH--------------------------hHhccCCCccEEECCCC-
Confidence 7777744443355566666666666655 4444332 22444445555555544
Q ss_pred CCCccCCccccccCCCCCCCCCcceEEeccCCCCccc-ccccccCCCCCeEEecCCCCCCccCCCCC--cCCccEEeecC
Q 035579 675 DDMVSFPPEDKRLGTALPLPASLTDLEIGRFPNLERL-SSSIVDLQNLTELCLRDCPKLKYFPEKGL--PSSLLRLSILS 751 (814)
Q Consensus 675 ~~l~~i~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l-~~~~~~l~~L~~L~l~~c~~l~~lp~~~l--~~~L~~L~i~~ 751 (814)
.+..++.... ..+++|++|++++ +.++.+ |..+..+++|+.|++++| +++.++...+ +++|++|++++
T Consensus 164 -~l~~~~~~~~------~~l~~L~~L~l~~-n~l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~ 234 (285)
T 1ozn_A 164 -RISSVPERAF------RGLHSLDRLLLHQ-NRVAHVHPHAFRDLGRLMTLYLFAN-NLSALPTEALAPLRALQYLRLND 234 (285)
T ss_dssp -CCCEECTTTT------TTCTTCCEEECCS-SCCCEECTTTTTTCTTCCEEECCSS-CCSCCCHHHHTTCTTCCEEECCS
T ss_pred -cccccCHHHh------cCccccCEEECCC-CcccccCHhHccCcccccEeeCCCC-cCCcCCHHHcccCcccCEEeccC
Confidence 3444443321 2345555555555 334443 334455555555555553 4444443211 44555555555
Q ss_pred Cc
Q 035579 752 CP 753 (814)
Q Consensus 752 c~ 753 (814)
||
T Consensus 235 N~ 236 (285)
T 1ozn_A 235 NP 236 (285)
T ss_dssp SC
T ss_pred CC
Confidence 44
No 68
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.77 E-value=1.4e-18 Score=181.56 Aligned_cols=215 Identities=14% Similarity=0.136 Sum_probs=172.6
Q ss_pred CcccccEEEEeccCCcchhhHhhcCCCCcceEeecccCCcccccccCCCCCCccEEEecCCCCceecCCCCCCCCCcceE
Q 035579 516 LPATLESLSVYKCSKLESIAERLDNNTSLETIGINFCENLKILPSGLHNLRQLREITIQRCGNLVSFPEGGLPCAKLSEL 595 (814)
Q Consensus 516 ~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L 595 (814)
.+++|++|++++|......|..+..+++|++|++++|.+.+..+ +..+++|++|++++| .++.++. .++|++|
T Consensus 32 ~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~Ls~n-~l~~l~~----~~~L~~L 104 (317)
T 3o53_A 32 SAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNN-YVQELLV----GPSIETL 104 (317)
T ss_dssp TGGGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEEEE--ETTCTTCCEEECCSS-EEEEEEE----CTTCCEE
T ss_pred cCCCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcchh--hhhcCCCCEEECcCC-ccccccC----CCCcCEE
Confidence 35689999999988877778889999999999999999887654 888999999999998 5666653 3799999
Q ss_pred eeccccccccccccccCCCCcceEEecC-ccCcccc--CCCCCceeEEEecCCcchhhhhhhcccccCCCCcccEEEEec
Q 035579 596 RIFQCERLEALPKGLHNLTSLQELTIGG-ALPSLEE--DGLPTNLHSLDIRGNMEIWKSMIERGRGFHRFSSLRHLTIDG 672 (814)
Q Consensus 596 ~l~~~~~l~~lp~~~~~l~~L~~L~l~~-~~~~l~~--~~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~l~~L~~L~l~~ 672 (814)
++++| .+..++. ..+++|+.|++++ .+..++. ...+++|++|++++|.+....+. .....+++|++|++++
T Consensus 105 ~l~~n-~l~~~~~--~~~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~---~~~~~l~~L~~L~L~~ 178 (317)
T 3o53_A 105 HAANN-NISRVSC--SRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFA---ELAASSDTLEHLNLQY 178 (317)
T ss_dssp ECCSS-CCSEEEE--CCCSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCCCEEEGG---GGGGGTTTCCEEECTT
T ss_pred ECCCC-ccCCcCc--cccCCCCEEECCCCCCCCccchhhhccCCCCEEECCCCCCCcccHH---HHhhccCcCCEEECCC
Confidence 99998 4555443 3468899999999 7776654 33478999999999987765442 2234789999999999
Q ss_pred CCCCCccCCccccccCCCCCCCCCcceEEeccCCCCcccccccccCCCCCeEEecCCCCCCccCCCC-CcCCccEEeecC
Q 035579 673 CDDDMVSFPPEDKRLGTALPLPASLTDLEIGRFPNLERLSSSIVDLQNLTELCLRDCPKLKYFPEKG-LPSSLLRLSILS 751 (814)
Q Consensus 673 ~~~~l~~i~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~l~~L~~L~l~~c~~l~~lp~~~-l~~~L~~L~i~~ 751 (814)
| .+..++... .+++|++|++++ +.++.+|..+..+++|++|++++| .++.+|... .+++|+.|++++
T Consensus 179 N--~l~~~~~~~--------~l~~L~~L~Ls~-N~l~~l~~~~~~l~~L~~L~L~~N-~l~~l~~~~~~l~~L~~L~l~~ 246 (317)
T 3o53_A 179 N--FIYDVKGQV--------VFAKLKTLDLSS-NKLAFMGPEFQSAAGVTWISLRNN-KLVLIEKALRFSQNLEHFDLRG 246 (317)
T ss_dssp S--CCCEEECCC--------CCTTCCEEECCS-SCCCEECGGGGGGTTCSEEECTTS-CCCEECTTCCCCTTCCEEECTT
T ss_pred C--cCccccccc--------ccccCCEEECCC-CcCCcchhhhcccCcccEEECcCC-cccchhhHhhcCCCCCEEEccC
Confidence 7 677775543 489999999999 789999888889999999999995 788888742 278999999999
Q ss_pred Cchh
Q 035579 752 CPLI 755 (814)
Q Consensus 752 c~~l 755 (814)
|+..
T Consensus 247 N~~~ 250 (317)
T 3o53_A 247 NGFH 250 (317)
T ss_dssp CCCB
T ss_pred CCcc
Confidence 8743
No 69
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.76 E-value=8.4e-18 Score=173.06 Aligned_cols=223 Identities=14% Similarity=0.133 Sum_probs=157.7
Q ss_pred cEEEEeccCCcchhhHhhcCCCCcceEeecccCCcccccccCCCCCCccEEEecCCCCceecCCCCCCCCCcceEeeccc
Q 035579 521 ESLSVYKCSKLESIAERLDNNTSLETIGINFCENLKILPSGLHNLRQLREITIQRCGNLVSFPEGGLPCAKLSELRIFQC 600 (814)
Q Consensus 521 ~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~~ 600 (814)
++++.++ ..++.+|.. ..+++++|++++|.+.+..+..+..+++|++|++++|......|..+..+++|++|++++|
T Consensus 14 ~~~~c~~-~~l~~ip~~--~~~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n 90 (285)
T 1ozn_A 14 VTTSCPQ-QGLQAVPVG--IPAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDN 90 (285)
T ss_dssp CEEECCS-SCCSSCCTT--CCTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSC
T ss_pred eEEEcCc-CCcccCCcC--CCCCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCC
Confidence 3445444 234445533 3467888888888888777777888888888888887433333566777888888888888
Q ss_pred cccccc-cccccCCCCcceEEecCccCccccCCCCCceeEEEecCCcchhhhhhhcccccCCCCcccEEEEecCCCCCcc
Q 035579 601 ERLEAL-PKGLHNLTSLQELTIGGALPSLEEDGLPTNLHSLDIRGNMEIWKSMIERGRGFHRFSSLRHLTIDGCDDDMVS 679 (814)
Q Consensus 601 ~~l~~l-p~~~~~l~~L~~L~l~~~~~~l~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~l~~ 679 (814)
..++.+ |..+..++ +|++|++++|......+ ..+..+++|++|++++| .+..
T Consensus 91 ~~l~~~~~~~~~~l~---------------------~L~~L~l~~n~l~~~~~----~~~~~l~~L~~L~l~~n--~l~~ 143 (285)
T 1ozn_A 91 AQLRSVDPATFHGLG---------------------RLHTLHLDRCGLQELGP----GLFRGLAALQYLYLQDN--ALQA 143 (285)
T ss_dssp TTCCCCCTTTTTTCT---------------------TCCEEECTTSCCCCCCT----TTTTTCTTCCEEECCSS--CCCC
T ss_pred CCccccCHHHhcCCc---------------------CCCEEECCCCcCCEECH----hHhhCCcCCCEEECCCC--cccc
Confidence 545555 44555544 45555555555443322 55788999999999997 6777
Q ss_pred CCccccccCCCCCCCCCcceEEeccCCCCccccc-ccccCCCCCeEEecCCCCCCccCCCCC--cCCccEEeecCCchhh
Q 035579 680 FPPEDKRLGTALPLPASLTDLEIGRFPNLERLSS-SIVDLQNLTELCLRDCPKLKYFPEKGL--PSSLLRLSILSCPLIE 756 (814)
Q Consensus 680 i~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~-~~~~l~~L~~L~l~~c~~l~~lp~~~l--~~~L~~L~i~~c~~l~ 756 (814)
++.... ..+++|++|++++ +.++.++. .+..+++|++|++++| .++.++...+ +++|++|++++|.--.
T Consensus 144 ~~~~~~------~~l~~L~~L~l~~-n~l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~n~l~~ 215 (285)
T 1ozn_A 144 LPDDTF------RDLGNLTHLFLHG-NRISSVPERAFRGLHSLDRLLLHQN-RVAHVHPHAFRDLGRLMTLYLFANNLSA 215 (285)
T ss_dssp CCTTTT------TTCTTCCEEECCS-SCCCEECTTTTTTCTTCCEEECCSS-CCCEECTTTTTTCTTCCEEECCSSCCSC
T ss_pred cCHhHh------ccCCCccEEECCC-CcccccCHHHhcCccccCEEECCCC-cccccCHhHccCcccccEeeCCCCcCCc
Confidence 776542 5689999999999 78999887 5889999999999995 6888755445 7899999999984211
Q ss_pred HhhccCCCccccccCCccEEEeCCeEeecc
Q 035579 757 EKCRKDGGQYWDLLTHIPFVRIDDKWVFGE 786 (814)
Q Consensus 757 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~ 786 (814)
.....+.....+..+++.++.+...
T Consensus 216 -----~~~~~~~~l~~L~~L~l~~N~~~c~ 240 (285)
T 1ozn_A 216 -----LPTEALAPLRALQYLRLNDNPWVCD 240 (285)
T ss_dssp -----CCHHHHTTCTTCCEEECCSSCEECS
T ss_pred -----CCHHHcccCcccCEEeccCCCccCC
Confidence 1112245677888899998876644
No 70
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.76 E-value=6.7e-18 Score=168.76 Aligned_cols=198 Identities=15% Similarity=0.094 Sum_probs=124.4
Q ss_pred CcceEeecccCCcccccccCCCCCCccEEEecCCCCceecCC-CCCCCCCcceEeecccccccccc-ccccCCCCcceEE
Q 035579 543 SLETIGINFCENLKILPSGLHNLRQLREITIQRCGNLVSFPE-GGLPCAKLSELRIFQCERLEALP-KGLHNLTSLQELT 620 (814)
Q Consensus 543 ~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~-~~~~l~~L~~L~l~~~~~l~~lp-~~~~~l~~L~~L~ 620 (814)
++++|++++|.+.+..+..+..+++|++|++++|..++.++. .+..+++|++|++++|+.++.+| ..+..+++|++|+
T Consensus 32 ~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~L~ 111 (239)
T 2xwt_C 32 STQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFLG 111 (239)
T ss_dssp TCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCCEEE
T ss_pred cccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCEEe
Confidence 444444444444444444444455555555555432444433 34444555555555422333333 2344555555555
Q ss_pred ecC-ccCccccCCCCCcee---EEEecCC-cchhhhhhhcccccCCCCccc-EEEEecCCCCCccCCccccccCCCCCCC
Q 035579 621 IGG-ALPSLEEDGLPTNLH---SLDIRGN-MEIWKSMIERGRGFHRFSSLR-HLTIDGCDDDMVSFPPEDKRLGTALPLP 694 (814)
Q Consensus 621 l~~-~~~~l~~~~~~~~L~---~L~l~~n-~~~~~~~~~~~~~l~~l~~L~-~L~l~~~~~~l~~i~~~~~~~~~~~~~~ 694 (814)
+++ .+..++....+++|+ +|++++| ....... ..|..+++|+ +|++++| .+..+|...+ ..
T Consensus 112 l~~n~l~~lp~~~~l~~L~~L~~L~l~~N~~l~~i~~----~~~~~l~~L~~~L~l~~n--~l~~i~~~~~-------~~ 178 (239)
T 2xwt_C 112 IFNTGLKMFPDLTKVYSTDIFFILEITDNPYMTSIPV----NAFQGLCNETLTLKLYNN--GFTSVQGYAF-------NG 178 (239)
T ss_dssp EEEECCCSCCCCTTCCBCCSEEEEEEESCTTCCEECT----TTTTTTBSSEEEEECCSC--CCCEECTTTT-------TT
T ss_pred CCCCCCccccccccccccccccEEECCCCcchhhcCc----ccccchhcceeEEEcCCC--CCcccCHhhc-------CC
Confidence 555 444444333445555 8888888 5544332 5688999999 9999997 7778888763 23
Q ss_pred CCcceEEeccCCCCccccc-ccccC-CCCCeEEecCCCCCCccCCCCCcCCccEEeecCCchh
Q 035579 695 ASLTDLEIGRFPNLERLSS-SIVDL-QNLTELCLRDCPKLKYFPEKGLPSSLLRLSILSCPLI 755 (814)
Q Consensus 695 ~~L~~L~l~~~~~l~~l~~-~~~~l-~~L~~L~l~~c~~l~~lp~~~l~~~L~~L~i~~c~~l 755 (814)
++|++|+++++..++.+|. .+..+ ++|+.|++++ ++++.+|.. .+++|+.|++.+++.+
T Consensus 179 ~~L~~L~L~~n~~l~~i~~~~~~~l~~~L~~L~l~~-N~l~~l~~~-~~~~L~~L~l~~~~~l 239 (239)
T 2xwt_C 179 TKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQ-TSVTALPSK-GLEHLKELIARNTWTL 239 (239)
T ss_dssp CEEEEEECTTCTTCCEECTTTTTTCSBCCSEEECTT-CCCCCCCCT-TCTTCSEEECTTC---
T ss_pred CCCCEEEcCCCCCcccCCHHHhhccccCCcEEECCC-CccccCChh-HhccCceeeccCccCC
Confidence 7899999999546999976 67888 9999999999 579999875 5789999999988643
No 71
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.74 E-value=1.2e-17 Score=184.86 Aligned_cols=214 Identities=14% Similarity=0.149 Sum_probs=168.8
Q ss_pred CcccccEEEEeccCCcchhhHhhcCCCCcceEeecccCCcccccccCCCCCCccEEEecCCCCceecCCCCCCCCCcceE
Q 035579 516 LPATLESLSVYKCSKLESIAERLDNNTSLETIGINFCENLKILPSGLHNLRQLREITIQRCGNLVSFPEGGLPCAKLSEL 595 (814)
Q Consensus 516 ~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L 595 (814)
.+++|+.|++++|......|..+..+++|++|++++|.+.+..| +..+++|++|++++| .+..+|. .++|++|
T Consensus 32 ~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N-~l~~l~~----~~~L~~L 104 (487)
T 3oja_A 32 SAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNN-YVQELLV----GPSIETL 104 (487)
T ss_dssp TGGGCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEE--CTTCTTCCEEECCSS-EEEEEEE----CTTCCEE
T ss_pred cCCCccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc--cccCCCCCEEEecCC-cCCCCCC----CCCcCEE
Confidence 34578889999888777777889999999999999999887665 888999999999998 5666653 3789999
Q ss_pred eeccccccccccccccCCCCcceEEecC-ccCcccc--CCCCCceeEEEecCCcchhhhhhhcccccC-CCCcccEEEEe
Q 035579 596 RIFQCERLEALPKGLHNLTSLQELTIGG-ALPSLEE--DGLPTNLHSLDIRGNMEIWKSMIERGRGFH-RFSSLRHLTID 671 (814)
Q Consensus 596 ~l~~~~~l~~lp~~~~~l~~L~~L~l~~-~~~~l~~--~~~~~~L~~L~l~~n~~~~~~~~~~~~~l~-~l~~L~~L~l~ 671 (814)
++++|. +..++. ..+++|+.|++++ .+..++. ...+++|+.|++++|.+....+ ..+. .+++|+.|+++
T Consensus 105 ~L~~N~-l~~~~~--~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~----~~l~~~l~~L~~L~Ls 177 (487)
T 3oja_A 105 HAANNN-ISRVSC--SRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNF----AELAASSDTLEHLNLQ 177 (487)
T ss_dssp ECCSSC-CCCEEE--CCCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEG----GGGGGGTTTCCEEECT
T ss_pred ECcCCc-CCCCCc--cccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcCh----HHHhhhCCcccEEecC
Confidence 999984 444443 3468899999998 6666543 3447899999999998776544 3343 78999999999
Q ss_pred cCCCCCccCCccccccCCCCCCCCCcceEEeccCCCCcccccccccCCCCCeEEecCCCCCCccCCCC-CcCCccEEeec
Q 035579 672 GCDDDMVSFPPEDKRLGTALPLPASLTDLEIGRFPNLERLSSSIVDLQNLTELCLRDCPKLKYFPEKG-LPSSLLRLSIL 750 (814)
Q Consensus 672 ~~~~~l~~i~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~l~~L~~L~l~~c~~l~~lp~~~-l~~~L~~L~i~ 750 (814)
+| .+..+|... .+++|+.|++++ |.++.+|+.+..+++|+.|++++| .++.+|... .+++|+.|+++
T Consensus 178 ~N--~l~~~~~~~--------~l~~L~~L~Ls~-N~l~~~~~~~~~l~~L~~L~Ls~N-~l~~lp~~l~~l~~L~~L~l~ 245 (487)
T 3oja_A 178 YN--FIYDVKGQV--------VFAKLKTLDLSS-NKLAFMGPEFQSAAGVTWISLRNN-KLVLIEKALRFSQNLEHFDLR 245 (487)
T ss_dssp TS--CCCEEECCC--------CCTTCCEEECCS-SCCCEECGGGGGGTTCSEEECTTS-CCCEECTTCCCCTTCCEEECT
T ss_pred CC--ccccccccc--------cCCCCCEEECCC-CCCCCCCHhHcCCCCccEEEecCC-cCcccchhhccCCCCCEEEcC
Confidence 97 666665543 589999999999 788888888889999999999994 788888742 26899999999
Q ss_pred CCchh
Q 035579 751 SCPLI 755 (814)
Q Consensus 751 ~c~~l 755 (814)
+|+..
T Consensus 246 ~N~l~ 250 (487)
T 3oja_A 246 GNGFH 250 (487)
T ss_dssp TCCBC
T ss_pred CCCCc
Confidence 98644
No 72
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.74 E-value=1.8e-18 Score=180.25 Aligned_cols=105 Identities=15% Similarity=0.105 Sum_probs=53.1
Q ss_pred hcCCCCCeEEEecCCCcccchhhHHHHHHHHhhhccccccEEEeeccCCc-cccccccC-------CCCCcceEeeecCC
Q 035579 329 QDICSLRRLTIRSCPKLQSLVAEEEKDQQQQLCELSCRLEYLILSCCEGL-VKLPQSSL-------SLCSLREIGIYKCS 400 (814)
Q Consensus 329 ~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~-~~~~~~~~-------~l~~L~~L~L~~~~ 400 (814)
...++|++|+++++. + .+|.... ..|+.|++++|.+. ..+|..+. .+++|++|++++|.
T Consensus 40 ~~~~~L~~l~l~~n~-l-~~p~~~~-----------~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~ 106 (312)
T 1wwl_A 40 GGGRSLEYLLKRVDT-E-ADLGQFT-----------DIIKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLE 106 (312)
T ss_dssp EEEEECTTHHHHCCT-T-CCCHHHH-----------HHHHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEB
T ss_pred ccCCCceeEeecccc-c-ccHHHHH-----------HHHhhcccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCc
Confidence 445556666666643 3 4433211 23555666665542 23443333 46666666666654
Q ss_pred CCcccCC-C--CCCCCCcEEEecccCCCCCCchhhhcCCC-----CCccEEEEecCC
Q 035579 401 SLVSFPE-V--ALPSKLEKIHIGACDALKSLPEAWMCDTN-----SSLEILYIEGCR 449 (814)
Q Consensus 401 ~l~~~~~-~--~~~~~L~~L~l~~~~~l~~~~~~~~~~~l-----~~L~~L~l~~~~ 449 (814)
....+|. + ..+++|++|++++|. +...|..+ ..+ ++|++|++++|.
T Consensus 107 l~~~~~~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~--~~l~~~~~~~L~~L~L~~N~ 160 (312)
T 1wwl_A 107 VTGTAPPPLLEATGPDLNILNLRNVS-WATRDAWL--AELQQWLKPGLKVLSIAQAH 160 (312)
T ss_dssp CBSCCCCCSSSCCSCCCSEEEEESCB-CSSSSSHH--HHHHTTCCTTCCEEEEESCS
T ss_pred ccchhHHHHHHhcCCCccEEEccCCC-CcchhHHH--HHHHHhhcCCCcEEEeeCCC
Confidence 3334443 2 446666666666665 43334333 222 566666666543
No 73
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.73 E-value=3e-18 Score=178.65 Aligned_cols=220 Identities=16% Similarity=0.120 Sum_probs=155.7
Q ss_pred ccEEEEeccCCc-chhhHhhc-------CCCCcceEeecccCCcccccccC--CCCCCccEEEecCCCCceecCCCCCCC
Q 035579 520 LESLSVYKCSKL-ESIAERLD-------NNTSLETIGINFCENLKILPSGL--HNLRQLREITIQRCGNLVSFPEGGLPC 589 (814)
Q Consensus 520 L~~L~l~~~~~~-~~~~~~~~-------~l~~L~~L~L~~n~~~~~~~~~~--~~l~~L~~L~l~~~~~l~~~~~~~~~l 589 (814)
++.|++++|... ..++..+. ++++|++|++++|.+.+.+|..+ ..+++|++|++++| .+..+|..+..+
T Consensus 65 L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~l 143 (312)
T 1wwl_A 65 IKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNV-SWATRDAWLAEL 143 (312)
T ss_dssp HHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCBSCCCCCSSSCCSCCCSEEEEESC-BCSSSSSHHHHH
T ss_pred HhhcccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCcccchhHHHHHHhcCCCccEEEccCC-CCcchhHHHHHH
Confidence 666666665542 23444443 68888888888888888777765 78888888888887 445456555544
Q ss_pred -----CCcceEeeccccccccccccccCCCCcceEEecC-ccCc----cccC--CCCCceeEEEecCCcchhhhhhhccc
Q 035579 590 -----AKLSELRIFQCERLEALPKGLHNLTSLQELTIGG-ALPS----LEED--GLPTNLHSLDIRGNMEIWKSMIERGR 657 (814)
Q Consensus 590 -----~~L~~L~l~~~~~l~~lp~~~~~l~~L~~L~l~~-~~~~----l~~~--~~~~~L~~L~l~~n~~~~~~~~~~~~ 657 (814)
++|++|++++|......|..++++++|++|++++ .+.. .+.. ..+++|++|++++|.+...... ...
T Consensus 144 ~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~-~~~ 222 (312)
T 1wwl_A 144 QQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGV-CSA 222 (312)
T ss_dssp HTTCCTTCCEEEEESCSCCCCCTTTCCCCSSCCEEECCSCTTCHHHHHHHHSCTTSCTTCCEEECTTSCCCCHHHH-HHH
T ss_pred HHhhcCCCcEEEeeCCCCccchHHHhccCCCCCEEECCCCCcCcchHHHHHHHhccCCCCCEEECCCCcCcchHHH-HHH
Confidence 7888888888854444447788888888888888 4322 1122 5578899999999987632110 013
Q ss_pred ccCCCCcccEEEEecCCCCCccCC-ccccccCCCCCCCCCcceEEeccCCCCcccccccccCCCCCeEEecCCCCCCccC
Q 035579 658 GFHRFSSLRHLTIDGCDDDMVSFP-PEDKRLGTALPLPASLTDLEIGRFPNLERLSSSIVDLQNLTELCLRDCPKLKYFP 736 (814)
Q Consensus 658 ~l~~l~~L~~L~l~~~~~~l~~i~-~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~l~~L~~L~l~~c~~l~~lp 736 (814)
.+..+++|++|++++| .+...+ ... +..+++|++|++++ |.++.+|..+. ++|++|++++ ++++.+|
T Consensus 223 ~~~~l~~L~~L~Ls~N--~l~~~~~~~~------~~~l~~L~~L~Ls~-N~l~~ip~~~~--~~L~~L~Ls~-N~l~~~p 290 (312)
T 1wwl_A 223 LAAARVQLQGLDLSHN--SLRDAAGAPS------CDWPSQLNSLNLSF-TGLKQVPKGLP--AKLSVLDLSY-NRLDRNP 290 (312)
T ss_dssp HHHTTCCCSEEECTTS--CCCSSCCCSC------CCCCTTCCEEECTT-SCCSSCCSSCC--SEEEEEECCS-SCCCSCC
T ss_pred HHhcCCCCCEEECCCC--cCCcccchhh------hhhcCCCCEEECCC-CccChhhhhcc--CCceEEECCC-CCCCCCh
Confidence 4567789999999987 555543 222 13578999999999 78888887665 8899999998 4788887
Q ss_pred CCCCcCCccEEeecCCc
Q 035579 737 EKGLPSSLLRLSILSCP 753 (814)
Q Consensus 737 ~~~l~~~L~~L~i~~c~ 753 (814)
.-.-+++|++|++++++
T Consensus 291 ~~~~l~~L~~L~L~~N~ 307 (312)
T 1wwl_A 291 SPDELPQVGNLSLKGNP 307 (312)
T ss_dssp CTTTSCEEEEEECTTCT
T ss_pred hHhhCCCCCEEeccCCC
Confidence 63347889999998875
No 74
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.72 E-value=4.9e-17 Score=166.43 Aligned_cols=199 Identities=16% Similarity=0.117 Sum_probs=114.6
Q ss_pred cccccEEEEeccCCcchhhHhhcCCCCcceEeecccCCcccccccCCCCCCccEEEecCCCCceecCCCCCCCCCcceEe
Q 035579 517 PATLESLSVYKCSKLESIAERLDNNTSLETIGINFCENLKILPSGLHNLRQLREITIQRCGNLVSFPEGGLPCAKLSELR 596 (814)
Q Consensus 517 ~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~ 596 (814)
++++++|++++|......+..+.++++|++|++++|.+.+..+..+..+++|++|++++|......+..+..+++|++|+
T Consensus 27 ~~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 106 (276)
T 2z62_A 27 PFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLV 106 (276)
T ss_dssp CTTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEE
T ss_pred CCCccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCccChhhhcCCccccEEE
Confidence 44677777777766555555677788888888888877776666777788888888887743333334567777888888
Q ss_pred eccccccccccccccCCCCcceEEecC-ccCcc--cc-CCCCCceeEEEecCCcchhhhhhhcccccCCCCccc----EE
Q 035579 597 IFQCERLEALPKGLHNLTSLQELTIGG-ALPSL--EE-DGLPTNLHSLDIRGNMEIWKSMIERGRGFHRFSSLR----HL 668 (814)
Q Consensus 597 l~~~~~l~~lp~~~~~l~~L~~L~l~~-~~~~l--~~-~~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~l~~L~----~L 668 (814)
+++|......+..+..+++|++|++++ .+..+ +. ...+++|++|++++|.+..... ..+..+++|+ +|
T Consensus 107 l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~~~~----~~~~~l~~L~~l~l~L 182 (276)
T 2z62_A 107 AVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYC----TDLRVLHQMPLLNLSL 182 (276)
T ss_dssp CTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECG----GGGHHHHTCTTCCEEE
T ss_pred CCCCCccccCchhcccCCCCCEEECcCCccceecCchhhccCCCCCEEECCCCCCCcCCH----HHhhhhhhccccceee
Confidence 877743333333566666666666666 44332 11 2334555555555555443322 2233333333 55
Q ss_pred EEecCCCCCccCCccccccCCCCCCCCCcceEEeccCCCCccccc-ccccCCCCCeEEecCC
Q 035579 669 TIDGCDDDMVSFPPEDKRLGTALPLPASLTDLEIGRFPNLERLSS-SIVDLQNLTELCLRDC 729 (814)
Q Consensus 669 ~l~~~~~~l~~i~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~-~~~~l~~L~~L~l~~c 729 (814)
++++| .+..++...+ ...+|++|++++ +.++.+|. .+..+++|++|+++++
T Consensus 183 ~ls~n--~l~~~~~~~~-------~~~~L~~L~L~~-n~l~~~~~~~~~~l~~L~~L~l~~N 234 (276)
T 2z62_A 183 DLSLN--PMNFIQPGAF-------KEIRLKELALDT-NQLKSVPDGIFDRLTSLQKIWLHTN 234 (276)
T ss_dssp ECCSS--CCCEECTTSS-------CSCCEEEEECCS-SCCSCCCTTTTTTCCSCCEEECCSS
T ss_pred ecCCC--cccccCcccc-------CCCcccEEECCC-CceeecCHhHhcccccccEEEccCC
Confidence 55554 4444444331 223555555555 44555554 2345555555555553
No 75
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.71 E-value=9.9e-17 Score=164.70 Aligned_cols=79 Identities=15% Similarity=0.150 Sum_probs=39.1
Q ss_pred CCcceEeecccCCcccccccCCCCCCccEEEecCCCCceecCCCCCCCCCcceEeeccccccccccccccCCCCcceEEe
Q 035579 542 TSLETIGINFCENLKILPSGLHNLRQLREITIQRCGNLVSFPEGGLPCAKLSELRIFQCERLEALPKGLHNLTSLQELTI 621 (814)
Q Consensus 542 ~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~~~~l~~lp~~~~~l~~L~~L~l 621 (814)
++++.|++++|.+.+..+..+..+++|++|++++| .+..++.. ..+++|++|++++| .++.+|..+..+++|+.|++
T Consensus 31 ~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~-~~l~~L~~L~Ls~N-~l~~l~~~~~~l~~L~~L~l 107 (290)
T 1p9a_G 31 KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRA-ELTKLQVD-GTLPVLGTLDLSHN-QLQSLPLLGQTLPALTVLDV 107 (290)
T ss_dssp TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTS-CCCEEECC-SCCTTCCEEECCSS-CCSSCCCCTTTCTTCCEEEC
T ss_pred CCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCC-ccCcccCC-CCCCcCCEEECCCC-cCCcCchhhccCCCCCEEEC
Confidence 34555555555555544455555555555555554 33334332 34455555555555 34444444444444444444
Q ss_pred cC
Q 035579 622 GG 623 (814)
Q Consensus 622 ~~ 623 (814)
++
T Consensus 108 ~~ 109 (290)
T 1p9a_G 108 SF 109 (290)
T ss_dssp CS
T ss_pred CC
Confidence 44
No 76
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.71 E-value=8.5e-17 Score=160.68 Aligned_cols=199 Identities=18% Similarity=0.161 Sum_probs=144.3
Q ss_pred CcccccEEEEeccCCcchhhHhhcCCCCcceEeecccC-CcccccccCCCCCCccEEEecCCCCceecCC-CCCCCCCcc
Q 035579 516 LPATLESLSVYKCSKLESIAERLDNNTSLETIGINFCE-NLKILPSGLHNLRQLREITIQRCGNLVSFPE-GGLPCAKLS 593 (814)
Q Consensus 516 ~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~-~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~-~~~~l~~L~ 593 (814)
++++++.|++++|...+..+..+.++++|++|++++|. +....+..+..+++|++|++++|..++.++. .+..+++|+
T Consensus 29 ~~~~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~ 108 (239)
T 2xwt_C 29 LPPSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLK 108 (239)
T ss_dssp CCTTCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCC
T ss_pred CCCcccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCC
Confidence 44578888888876665555578888888888888886 5555555777888888888887335666664 566778888
Q ss_pred eEeeccccccccccccccCCCCcc---eEEecC--ccCcccc--CCCCCcee-EEEecCCcchhhhhhhcccccCCCCcc
Q 035579 594 ELRIFQCERLEALPKGLHNLTSLQ---ELTIGG--ALPSLEE--DGLPTNLH-SLDIRGNMEIWKSMIERGRGFHRFSSL 665 (814)
Q Consensus 594 ~L~l~~~~~l~~lp~~~~~l~~L~---~L~l~~--~~~~l~~--~~~~~~L~-~L~l~~n~~~~~~~~~~~~~l~~l~~L 665 (814)
+|++++| .++.+|. +..+++|+ .|++++ .+..++. ...+++|+ +|++++|....... ..+.. ++|
T Consensus 109 ~L~l~~n-~l~~lp~-~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l~~i~~----~~~~~-~~L 181 (239)
T 2xwt_C 109 FLGIFNT-GLKMFPD-LTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFTSVQG----YAFNG-TKL 181 (239)
T ss_dssp EEEEEEE-CCCSCCC-CTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCCCCEECT----TTTTT-CEE
T ss_pred EEeCCCC-CCccccc-cccccccccccEEECCCCcchhhcCcccccchhcceeEEEcCCCCCcccCH----hhcCC-CCC
Confidence 8888888 4556776 77777777 888877 4666654 34467888 88888887664332 34555 789
Q ss_pred cEEEEecCCCCCccCCccccccCCCCCCC-CCcceEEeccCCCCcccccccccCCCCCeEEecCCCC
Q 035579 666 RHLTIDGCDDDMVSFPPEDKRLGTALPLP-ASLTDLEIGRFPNLERLSSSIVDLQNLTELCLRDCPK 731 (814)
Q Consensus 666 ~~L~l~~~~~~l~~i~~~~~~~~~~~~~~-~~L~~L~l~~~~~l~~l~~~~~~l~~L~~L~l~~c~~ 731 (814)
++|++++| ..+..+|...+ ..+ ++|+.|++++ +.++.+|.. .+++|+.|+++++..
T Consensus 182 ~~L~L~~n-~~l~~i~~~~~------~~l~~~L~~L~l~~-N~l~~l~~~--~~~~L~~L~l~~~~~ 238 (239)
T 2xwt_C 182 DAVYLNKN-KYLTVIDKDAF------GGVYSGPSLLDVSQ-TSVTALPSK--GLEHLKELIARNTWT 238 (239)
T ss_dssp EEEECTTC-TTCCEECTTTT------TTCSBCCSEEECTT-CCCCCCCCT--TCTTCSEEECTTC--
T ss_pred CEEEcCCC-CCcccCCHHHh------hccccCCcEEECCC-CccccCChh--HhccCceeeccCccC
Confidence 99999886 12777776543 456 8999999999 788888864 688999999988754
No 77
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.70 E-value=3.1e-16 Score=160.98 Aligned_cols=198 Identities=19% Similarity=0.214 Sum_probs=164.0
Q ss_pred hcCCCCcceEeecccCCcccccccCCCCCCccEEEecCCCCceecCCCCCCCCCcceEeeccccccccccccccCCCCcc
Q 035579 538 LDNNTSLETIGINFCENLKILPSGLHNLRQLREITIQRCGNLVSFPEGGLPCAKLSELRIFQCERLEALPKGLHNLTSLQ 617 (814)
Q Consensus 538 ~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~~~~l~~lp~~~~~l~~L~ 617 (814)
+.++++++.++++++.+.. +|..+. +++++|++++|......+..+..+++|++|++++| .++.++.. ..+++|+
T Consensus 6 ~~~l~~l~~l~~~~~~l~~-ip~~~~--~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~-~~l~~L~ 80 (290)
T 1p9a_G 6 VSKVASHLEVNCDKRNLTA-LPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRA-ELTKLQVD-GTLPVLG 80 (290)
T ss_dssp EECSTTCCEEECTTSCCSS-CCSCCC--TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTS-CCCEEECC-SCCTTCC
T ss_pred ccccCCccEEECCCCCCCc-CCCCCC--CCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCC-ccCcccCC-CCCCcCC
Confidence 5677889999999877764 454443 68999999999554444567888999999999999 56666654 7899999
Q ss_pred eEEecC-ccCcccc-CCCCCceeEEEecCCcchhhhhhhcccccCCCCcccEEEEecCCCCCccCCccccccCCCCCCCC
Q 035579 618 ELTIGG-ALPSLEE-DGLPTNLHSLDIRGNMEIWKSMIERGRGFHRFSSLRHLTIDGCDDDMVSFPPEDKRLGTALPLPA 695 (814)
Q Consensus 618 ~L~l~~-~~~~l~~-~~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~l~~i~~~~~~~~~~~~~~~ 695 (814)
.|++++ .+..++. ...+++|++|++++|.+....+ ..|..+++|++|++++| .+..+|...+ ..++
T Consensus 81 ~L~Ls~N~l~~l~~~~~~l~~L~~L~l~~N~l~~l~~----~~~~~l~~L~~L~L~~N--~l~~~~~~~~------~~l~ 148 (290)
T 1p9a_G 81 TLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPL----GALRGLGELQELYLKGN--ELKTLPPGLL------TPTP 148 (290)
T ss_dssp EEECCSSCCSSCCCCTTTCTTCCEEECCSSCCCCCCS----STTTTCTTCCEEECTTS--CCCCCCTTTT------TTCT
T ss_pred EEECCCCcCCcCchhhccCCCCCEEECCCCcCcccCH----HHHcCCCCCCEEECCCC--CCCccChhhc------cccc
Confidence 999999 7777776 4567999999999998876544 67899999999999998 7888887653 5689
Q ss_pred CcceEEeccCCCCccccc-ccccCCCCCeEEecCCCCCCccCCCCC-cCCccEEeecCCch
Q 035579 696 SLTDLEIGRFPNLERLSS-SIVDLQNLTELCLRDCPKLKYFPEKGL-PSSLLRLSILSCPL 754 (814)
Q Consensus 696 ~L~~L~l~~~~~l~~l~~-~~~~l~~L~~L~l~~c~~l~~lp~~~l-~~~L~~L~i~~c~~ 754 (814)
+|+.|++++ |.++.+|. .+..+++|++|++++ ++++.+|...+ .++|+.++++++|.
T Consensus 149 ~L~~L~L~~-N~l~~l~~~~~~~l~~L~~L~L~~-N~l~~ip~~~~~~~~L~~l~L~~Np~ 207 (290)
T 1p9a_G 149 KLEKLSLAN-NNLTELPAGLLNGLENLDTLLLQE-NSLYTIPKGFFGSHLLPFAFLHGNPW 207 (290)
T ss_dssp TCCEEECTT-SCCSCCCTTTTTTCTTCCEEECCS-SCCCCCCTTTTTTCCCSEEECCSCCB
T ss_pred CCCEEECCC-CcCCccCHHHhcCcCCCCEEECCC-CcCCccChhhcccccCCeEEeCCCCc
Confidence 999999999 78999998 457899999999999 58999998655 67999999998763
No 78
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.70 E-value=1.4e-16 Score=163.06 Aligned_cols=206 Identities=19% Similarity=0.253 Sum_probs=164.3
Q ss_pred chhhHhhcCCCCcceEeecccCCcccccccCCCCCCccEEEecCCCCceecCC-CCCCCCCcceEeeccccccccccccc
Q 035579 532 ESIAERLDNNTSLETIGINFCENLKILPSGLHNLRQLREITIQRCGNLVSFPE-GGLPCAKLSELRIFQCERLEALPKGL 610 (814)
Q Consensus 532 ~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~-~~~~l~~L~~L~l~~~~~l~~lp~~~ 610 (814)
..+|..+. ++|++|++++|.+.+..+..+..+++|++|++++| .+..++. .+..+++|++|++++|......+..+
T Consensus 20 ~~ip~~l~--~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~ 96 (276)
T 2z62_A 20 YKIPDNLP--FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRC-EIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAF 96 (276)
T ss_dssp SSCCSSSC--TTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTC-CCCEECTTTTTTCTTCCEEECTTCCCCEECTTTT
T ss_pred cccCCCCC--CCccEEECCCCcccccCHhHhccccCCcEEECCCC-cCCccCHHHccCCcCCCEEECCCCccCccChhhh
Confidence 34554332 57999999999999887778999999999999998 5555554 68889999999999995544455788
Q ss_pred cCCCCcceEEecC-ccCcccc--CCCCCceeEEEecCCcchhhhhhhcccccCCCCcccEEEEecCCCCCccCCcccccc
Q 035579 611 HNLTSLQELTIGG-ALPSLEE--DGLPTNLHSLDIRGNMEIWKSMIERGRGFHRFSSLRHLTIDGCDDDMVSFPPEDKRL 687 (814)
Q Consensus 611 ~~l~~L~~L~l~~-~~~~l~~--~~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~l~~i~~~~~~~ 687 (814)
.++++|++|++++ .+..++. ...+++|++|++++|....... +..+..+++|++|++++| .+..++....
T Consensus 97 ~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l---~~~~~~l~~L~~L~Ls~N--~l~~~~~~~~-- 169 (276)
T 2z62_A 97 SGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKL---PEYFSNLTNLEHLDLSSN--KIQSIYCTDL-- 169 (276)
T ss_dssp TTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCC---CGGGGGCTTCCEEECCSS--CCCEECGGGG--
T ss_pred cCCccccEEECCCCCccccCchhcccCCCCCEEECcCCccceecC---chhhccCCCCCEEECCCC--CCCcCCHHHh--
Confidence 9999999999998 6666654 5567999999999998765321 156889999999999997 7777765432
Q ss_pred CCCCCCCCCcc----eEEeccCCCCcccccccccCCCCCeEEecCCCCCCccCCCCC--cCCccEEeecCCc
Q 035579 688 GTALPLPASLT----DLEIGRFPNLERLSSSIVDLQNLTELCLRDCPKLKYFPEKGL--PSSLLRLSILSCP 753 (814)
Q Consensus 688 ~~~~~~~~~L~----~L~l~~~~~l~~l~~~~~~l~~L~~L~l~~c~~l~~lp~~~l--~~~L~~L~i~~c~ 753 (814)
..+++|+ +|++++ +.++.++.......+|+.|++++| +++.+|...+ +++|++|+++++|
T Consensus 170 ----~~l~~L~~l~l~L~ls~-n~l~~~~~~~~~~~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~l~~N~ 235 (276)
T 2z62_A 170 ----RVLHQMPLLNLSLDLSL-NPMNFIQPGAFKEIRLKELALDTN-QLKSVPDGIFDRLTSLQKIWLHTNP 235 (276)
T ss_dssp ----HHHHTCTTCCEEEECCS-SCCCEECTTSSCSCCEEEEECCSS-CCSCCCTTTTTTCCSCCEEECCSSC
T ss_pred ----hhhhhccccceeeecCC-CcccccCccccCCCcccEEECCCC-ceeecCHhHhcccccccEEEccCCc
Confidence 2345555 899999 789999886666679999999995 6999988654 7899999999654
No 79
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.68 E-value=7.6e-16 Score=156.77 Aligned_cols=194 Identities=22% Similarity=0.290 Sum_probs=95.8
Q ss_pred ccEEEEeccCCcchhhHhhcCCCCcceEeecccCCcccccccCCCCCCccEEEecCCCCceecCCC-CCCCCCcceEeec
Q 035579 520 LESLSVYKCSKLESIAERLDNNTSLETIGINFCENLKILPSGLHNLRQLREITIQRCGNLVSFPEG-GLPCAKLSELRIF 598 (814)
Q Consensus 520 L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~-~~~l~~L~~L~l~ 598 (814)
.+.++++++. ++.+|..+. ++++.|++++|.+....+..+..+++|++|++++| .+..+|.. +..+++|++|+++
T Consensus 18 ~~~l~~~~~~-l~~ip~~~~--~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n-~l~~i~~~~~~~l~~L~~L~l~ 93 (270)
T 2o6q_A 18 KNSVDCSSKK-LTAIPSNIP--ADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDN-KLQTLPAGIFKELKNLETLWVT 93 (270)
T ss_dssp TTEEECTTSC-CSSCCSCCC--TTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSS-CCSCCCTTTTSSCTTCCEEECC
T ss_pred CCEEEccCCC-CCccCCCCC--CCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCC-ccCeeChhhhcCCCCCCEEECC
Confidence 4445554432 223443222 45666666666665555555666666666666665 34445443 3456666666666
Q ss_pred ccccccccc-ccccCCCCcceEEecCccCccccCCCCCceeEEEecCCcchhhhhhhcccccCCCCcccEEEEecCCCCC
Q 035579 599 QCERLEALP-KGLHNLTSLQELTIGGALPSLEEDGLPTNLHSLDIRGNMEIWKSMIERGRGFHRFSSLRHLTIDGCDDDM 677 (814)
Q Consensus 599 ~~~~l~~lp-~~~~~l~~L~~L~l~~~~~~l~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~l 677 (814)
+|. ++.+| ..+..+++|++|++++ |....... ..+..+++|++|++++| .+
T Consensus 94 ~n~-l~~~~~~~~~~l~~L~~L~l~~---------------------n~l~~~~~----~~~~~l~~L~~L~Ls~n--~l 145 (270)
T 2o6q_A 94 DNK-LQALPIGVFDQLVNLAELRLDR---------------------NQLKSLPP----RVFDSLTKLTYLSLGYN--EL 145 (270)
T ss_dssp SSC-CCCCCTTTTTTCSSCCEEECCS---------------------SCCCCCCT----TTTTTCTTCCEEECCSS--CC
T ss_pred CCc-CCcCCHhHcccccCCCEEECCC---------------------CccCeeCH----HHhCcCcCCCEEECCCC--cC
Confidence 663 33333 2334444444444444 33222211 23444555555555554 44
Q ss_pred ccCCccccccCCCCCCCCCcceEEeccCCCCccccc-ccccCCCCCeEEecCCCCCCccCCCCC--cCCccEEeecCCc
Q 035579 678 VSFPPEDKRLGTALPLPASLTDLEIGRFPNLERLSS-SIVDLQNLTELCLRDCPKLKYFPEKGL--PSSLLRLSILSCP 753 (814)
Q Consensus 678 ~~i~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~-~~~~l~~L~~L~l~~c~~l~~lp~~~l--~~~L~~L~i~~c~ 753 (814)
..+|...+ ..+++|++|++++ +.++.++. .+..+++|++|++++| +++.+|...+ +++|+.|++++||
T Consensus 146 ~~~~~~~~------~~l~~L~~L~L~~-n~l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~l~~N~ 216 (270)
T 2o6q_A 146 QSLPKGVF------DKLTSLKELRLYN-NQLKRVPEGAFDKLTELKTLKLDNN-QLKRVPEGAFDSLEKLKMLQLQENP 216 (270)
T ss_dssp CCCCTTTT------TTCTTCCEEECCS-SCCSCCCTTTTTTCTTCCEEECCSS-CCSCCCTTTTTTCTTCCEEECCSSC
T ss_pred CccCHhHc------cCCcccceeEecC-CcCcEeChhHhccCCCcCEEECCCC-cCCcCCHHHhccccCCCEEEecCCC
Confidence 44444321 2345555555555 44555544 3445555555555553 4555554333 4555555555544
No 80
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.67 E-value=2e-15 Score=159.96 Aligned_cols=241 Identities=18% Similarity=0.109 Sum_probs=142.3
Q ss_pred ceEeeecCCCCcccCCCCCCCCCcEEEecccCCCCCCchhhhcCCCCCccEEEEecCCCCcccccccCcCccceeeeccc
Q 035579 392 REIGIYKCSSLVSFPEVALPSKLEKIHIGACDALKSLPEAWMCDTNSSLEILYIEGCRSLTYIAAVQLPSSLKNLQIHGC 471 (814)
Q Consensus 392 ~~L~L~~~~~l~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~L~~L~l~~~ 471 (814)
++++.++ +.++.+|. ..++++++|++++|+ ++.+|...| .++++|++|++++|...+.++...+.
T Consensus 12 ~~v~C~~-~~Lt~iP~-~l~~~l~~L~Ls~N~-i~~i~~~~f-~~l~~L~~L~Ls~N~i~~~i~~~~f~----------- 76 (350)
T 4ay9_X 12 RVFLCQE-SKVTEIPS-DLPRNAIELRFVLTK-LRVIQKGAF-SGFGDLEKIEISQNDVLEVIEADVFS----------- 76 (350)
T ss_dssp TEEEEES-TTCCSCCT-TCCTTCSEEEEESCC-CSEECTTSS-TTCTTCCEEEEECCTTCCEECTTSBC-----------
T ss_pred CEEEecC-CCCCccCc-CcCCCCCEEEccCCc-CCCcCHHHH-cCCCCCCEEECcCCCCCCccChhHhh-----------
Confidence 3455555 35566663 124677777777776 666666543 67777888888776533332211110
Q ss_pred cCCcccccccCCCCCCCCCCCCCCccEEeecCCCCcccccccCCCcccccE-EEEeccCCcchhhHhhcCCCCcceEeec
Q 035579 472 YNIKTLTVEEGIPSSSSSRYTSSILEHLSIVGCPSLTCIFSKNELPATLES-LSVYKCSKLESIAERLDNNTSLETIGIN 550 (814)
Q Consensus 472 ~~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~L~~-L~l~~~~~~~~~~~~~~~l~~L~~L~L~ 550 (814)
..+++.+ +.+..|......+..|..+++|++|+++
T Consensus 77 --------------------------------------------~L~~l~~~l~~~~N~l~~l~~~~f~~l~~L~~L~l~ 112 (350)
T 4ay9_X 77 --------------------------------------------NLPKLHEIRIEKANNLLYINPEAFQNLPNLQYLLIS 112 (350)
T ss_dssp --------------------------------------------SCTTCCEEEEEEETTCCEECTTSBCCCTTCCEEEEE
T ss_pred --------------------------------------------cchhhhhhhcccCCcccccCchhhhhcccccccccc
Confidence 0012222 2222333333334556777777777777
Q ss_pred ccCCcccccccCCCCCCccEEEecCCCCceecCCC-CCCC-CCcceEeeccccccccccccccCCCCcceEEecCccCcc
Q 035579 551 FCENLKILPSGLHNLRQLREITIQRCGNLVSFPEG-GLPC-AKLSELRIFQCERLEALPKGLHNLTSLQELTIGGALPSL 628 (814)
Q Consensus 551 ~n~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~-~~~l-~~L~~L~l~~~~~l~~lp~~~~~l~~L~~L~l~~~~~~l 628 (814)
+|.+....+..+....++..+++.++..+..++.. +..+ ..++.|++++| .++.+|......
T Consensus 113 ~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N-~i~~i~~~~f~~--------------- 176 (350)
T 4ay9_X 113 NTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKN-GIQEIHNSAFNG--------------- 176 (350)
T ss_dssp EECCSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSS-CCCEECTTSSTT---------------
T ss_pred ccccccCCchhhcccchhhhhhhccccccccccccchhhcchhhhhhccccc-cccCCChhhccc---------------
Confidence 77776655555556666777777666566666652 3333 35666777666 455555433332
Q ss_pred ccCCCCCceeEEEecCCcchhhhhhhcccccCCCCcccEEEEecCCCCCccCCccccccCCCCCCCCCcceEEeccCCCC
Q 035579 629 EEDGLPTNLHSLDIRGNMEIWKSMIERGRGFHRFSSLRHLTIDGCDDDMVSFPPEDKRLGTALPLPASLTDLEIGRFPNL 708 (814)
Q Consensus 629 ~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~l~~i~~~~~~~~~~~~~~~~L~~L~l~~~~~l 708 (814)
.+|++|++.+++.....+. ..|..+++|++|++++| .+..+|... +.+|+.|.+.+++.+
T Consensus 177 ------~~L~~l~l~~~n~l~~i~~---~~f~~l~~L~~LdLs~N--~l~~lp~~~---------~~~L~~L~~l~~~~l 236 (350)
T 4ay9_X 177 ------TQLDELNLSDNNNLEELPN---DVFHGASGPVILDISRT--RIHSLPSYG---------LENLKKLRARSTYNL 236 (350)
T ss_dssp ------EEEEEEECTTCTTCCCCCT---TTTTTEECCSEEECTTS--CCCCCCSSS---------CTTCCEEECTTCTTC
T ss_pred ------cchhHHhhccCCcccCCCH---HHhccCcccchhhcCCC--CcCccChhh---------hccchHhhhccCCCc
Confidence 3455555554433333221 45677788888888876 777777754 577778887777788
Q ss_pred cccccccccCCCCCeEEecC
Q 035579 709 ERLSSSIVDLQNLTELCLRD 728 (814)
Q Consensus 709 ~~l~~~~~~l~~L~~L~l~~ 728 (814)
+.+| .+..+++|+.+++.+
T Consensus 237 ~~lP-~l~~l~~L~~l~l~~ 255 (350)
T 4ay9_X 237 KKLP-TLEKLVALMEASLTY 255 (350)
T ss_dssp CCCC-CTTTCCSCCEEECSC
T ss_pred CcCC-CchhCcChhhCcCCC
Confidence 8887 467778888888754
No 81
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.67 E-value=1.7e-15 Score=154.14 Aligned_cols=195 Identities=23% Similarity=0.274 Sum_probs=131.2
Q ss_pred ccEEEecCCCCceecCCCCCCCCCcceEeecccccccccc-ccccCCCCcceEEecC-ccCcccc--CCCCCceeEEEec
Q 035579 568 LREITIQRCGNLVSFPEGGLPCAKLSELRIFQCERLEALP-KGLHNLTSLQELTIGG-ALPSLEE--DGLPTNLHSLDIR 643 (814)
Q Consensus 568 L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~~~~l~~lp-~~~~~l~~L~~L~l~~-~~~~l~~--~~~~~~L~~L~l~ 643 (814)
.+.++++++ .++.+|..+. +++++|++++|. ++.++ ..+.++++|++|++++ .+..++. ...+++|++|+++
T Consensus 18 ~~~l~~~~~-~l~~ip~~~~--~~l~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~ 93 (270)
T 2o6q_A 18 KNSVDCSSK-KLTAIPSNIP--ADTKKLDLQSNK-LSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVT 93 (270)
T ss_dssp TTEEECTTS-CCSSCCSCCC--TTCSEEECCSSC-CSCCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEECC
T ss_pred CCEEEccCC-CCCccCCCCC--CCCCEEECcCCC-CCeeCHHHhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEECC
Confidence 444555443 3444444332 245555555552 23332 2445555555555555 4444443 2335677777777
Q ss_pred CCcchhhhhhhcccccCCCCcccEEEEecCCCCCccCCccccccCCCCCCCCCcceEEeccCCCCccccc-ccccCCCCC
Q 035579 644 GNMEIWKSMIERGRGFHRFSSLRHLTIDGCDDDMVSFPPEDKRLGTALPLPASLTDLEIGRFPNLERLSS-SIVDLQNLT 722 (814)
Q Consensus 644 ~n~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~l~~i~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~-~~~~l~~L~ 722 (814)
+|.+..... ..+..+++|++|++++| .+..++...+ ..+++|++|++++ +.++.+|. .+..+++|+
T Consensus 94 ~n~l~~~~~----~~~~~l~~L~~L~l~~n--~l~~~~~~~~------~~l~~L~~L~Ls~-n~l~~~~~~~~~~l~~L~ 160 (270)
T 2o6q_A 94 DNKLQALPI----GVFDQLVNLAELRLDRN--QLKSLPPRVF------DSLTKLTYLSLGY-NELQSLPKGVFDKLTSLK 160 (270)
T ss_dssp SSCCCCCCT----TTTTTCSSCCEEECCSS--CCCCCCTTTT------TTCTTCCEEECCS-SCCCCCCTTTTTTCTTCC
T ss_pred CCcCCcCCH----hHcccccCCCEEECCCC--ccCeeCHHHh------CcCcCCCEEECCC-CcCCccCHhHccCCcccc
Confidence 777655433 56788999999999997 7777776542 5789999999999 78999987 478999999
Q ss_pred eEEecCCCCCCccCCCCC--cCCccEEeecCCchhhHhhccCCCccccccCCccEEEeCCeEeec
Q 035579 723 ELCLRDCPKLKYFPEKGL--PSSLLRLSILSCPLIEEKCRKDGGQYWDLLTHIPFVRIDDKWVFG 785 (814)
Q Consensus 723 ~L~l~~c~~l~~lp~~~l--~~~L~~L~i~~c~~l~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~ 785 (814)
+|++++| .++.++...+ +++|++|++++|. ++. .....+..+..+..+.+.++....
T Consensus 161 ~L~L~~n-~l~~~~~~~~~~l~~L~~L~L~~N~-l~~----~~~~~~~~l~~L~~L~l~~N~~~c 219 (270)
T 2o6q_A 161 ELRLYNN-QLKRVPEGAFDKLTELKTLKLDNNQ-LKR----VPEGAFDSLEKLKMLQLQENPWDC 219 (270)
T ss_dssp EEECCSS-CCSCCCTTTTTTCTTCCEEECCSSC-CSC----CCTTTTTTCTTCCEEECCSSCBCC
T ss_pred eeEecCC-cCcEeChhHhccCCCcCEEECCCCc-CCc----CCHHHhccccCCCEEEecCCCeeC
Confidence 9999995 7999987655 6899999999984 221 122335567788889998876543
No 82
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.66 E-value=1.3e-16 Score=166.15 Aligned_cols=202 Identities=13% Similarity=0.071 Sum_probs=127.2
Q ss_pred CCCcceEeecccCCcccccccC--CCCCCccEEEecCCCCceecC----CCCCCCCCcceEeeccccccccccccccCCC
Q 035579 541 NTSLETIGINFCENLKILPSGL--HNLRQLREITIQRCGNLVSFP----EGGLPCAKLSELRIFQCERLEALPKGLHNLT 614 (814)
Q Consensus 541 l~~L~~L~L~~n~~~~~~~~~~--~~l~~L~~L~l~~~~~l~~~~----~~~~~l~~L~~L~l~~~~~l~~lp~~~~~l~ 614 (814)
+++|++|++++|.+.+..|..+ ..+++|++|++++|......+ ..+..+++|++|++++|......|..+..++
T Consensus 90 ~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~ 169 (310)
T 4glp_A 90 YSRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWLKPGLKVLSIAQAHSPAFSCEQVRAFP 169 (310)
T ss_dssp HSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTBCSCCCEEEEECCSSCCCCTTSCCCCT
T ss_pred cCceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhhccCCCEEEeeCCCcchhhHHHhccCC
Confidence 3456666666666666666655 666667777776664332222 1223456677777766644444445666667
Q ss_pred CcceEEecC-ccCc---ccc---CCCCCceeEEEecCCcchhhhhhhcccccCCCCcccEEEEecCCCCCccC-Cccccc
Q 035579 615 SLQELTIGG-ALPS---LEE---DGLPTNLHSLDIRGNMEIWKSMIERGRGFHRFSSLRHLTIDGCDDDMVSF-PPEDKR 686 (814)
Q Consensus 615 ~L~~L~l~~-~~~~---l~~---~~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~l~~i-~~~~~~ 686 (814)
+|++|++++ .+.. ++. ...+++|++|++++|.+...... ....+..+++|++|++++| .+..+ |...+.
T Consensus 170 ~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~-~~~l~~~l~~L~~L~Ls~N--~l~~~~p~~~~~ 246 (310)
T 4glp_A 170 ALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMETPTGV-CAALAAAGVQPHSLDLSHN--SLRATVNPSAPR 246 (310)
T ss_dssp TCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCCHHHH-HHHHHHHTCCCSSEECTTS--CCCCCCCSCCSS
T ss_pred CCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCchHHH-HHHHHhcCCCCCEEECCCC--CCCccchhhHHh
Confidence 777777766 3322 111 23467788888888876432210 0012467788889999887 55554 555421
Q ss_pred cCCCCCCCCCcceEEeccCCCCcccccccccCCCCCeEEecCCCCCCccCCCCCcCCccEEeecCCc
Q 035579 687 LGTALPLPASLTDLEIGRFPNLERLSSSIVDLQNLTELCLRDCPKLKYFPEKGLPSSLLRLSILSCP 753 (814)
Q Consensus 687 ~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~l~~L~~L~l~~c~~l~~lp~~~l~~~L~~L~i~~c~ 753 (814)
...+++|++|++++ |.++.+|..+. ++|++|++++| +++.+|.-..+++|++|++++++
T Consensus 247 ----~~~~~~L~~L~Ls~-N~l~~lp~~~~--~~L~~L~Ls~N-~l~~~~~~~~l~~L~~L~L~~N~ 305 (310)
T 4glp_A 247 ----CMWSSALNSLNLSF-AGLEQVPKGLP--AKLRVLDLSSN-RLNRAPQPDELPEVDNLTLDGNP 305 (310)
T ss_dssp ----CCCCTTCCCEECCS-SCCCSCCSCCC--SCCSCEECCSC-CCCSCCCTTSCCCCSCEECSSTT
T ss_pred ----ccCcCcCCEEECCC-CCCCchhhhhc--CCCCEEECCCC-cCCCCchhhhCCCccEEECcCCC
Confidence 11247899999988 78888887664 78999999884 78887764447888999998875
No 83
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.66 E-value=5.2e-16 Score=161.04 Aligned_cols=194 Identities=16% Similarity=0.202 Sum_probs=142.5
Q ss_pred cccccEEEEeccCCcchhhHhhcCCCCcceEeecccCCcccccccCCCCCCccEEEecCCCCceecCCCCCCCCCcceEe
Q 035579 517 PATLESLSVYKCSKLESIAERLDNNTSLETIGINFCENLKILPSGLHNLRQLREITIQRCGNLVSFPEGGLPCAKLSELR 596 (814)
Q Consensus 517 ~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~ 596 (814)
+++|+.|++++|.... ++ .+..+++|++|++++|.+....+ +..+++|++|++++| .+..++ .+..+++|++|+
T Consensus 40 l~~L~~L~l~~~~i~~-l~-~~~~l~~L~~L~L~~n~i~~~~~--~~~l~~L~~L~L~~n-~l~~~~-~~~~l~~L~~L~ 113 (308)
T 1h6u_A 40 LDGITTLSAFGTGVTT-IE-GVQYLNNLIGLELKDNQITDLAP--LKNLTKITELELSGN-PLKNVS-AIAGLQSIKTLD 113 (308)
T ss_dssp HHTCCEEECTTSCCCC-CT-TGGGCTTCCEEECCSSCCCCCGG--GTTCCSCCEEECCSC-CCSCCG-GGTTCTTCCEEE
T ss_pred cCCcCEEEeeCCCccC-ch-hhhccCCCCEEEccCCcCCCChh--HccCCCCCEEEccCC-cCCCch-hhcCCCCCCEEE
Confidence 4578888888875443 44 57888889999998888776544 788888999999888 455565 577788888888
Q ss_pred eccccccccccccccCCCCcceEEecC-ccCccccCCCCCceeEEEecCCcchhhhhhhcccccCCCCcccEEEEecCCC
Q 035579 597 IFQCERLEALPKGLHNLTSLQELTIGG-ALPSLEEDGLPTNLHSLDIRGNMEIWKSMIERGRGFHRFSSLRHLTIDGCDD 675 (814)
Q Consensus 597 l~~~~~l~~lp~~~~~l~~L~~L~l~~-~~~~l~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~ 675 (814)
+++| .++.++. +..+++|+.|++++ .+..++....+++|++|++++|...... .+..+++|+.|++++|
T Consensus 114 l~~n-~l~~~~~-l~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~l~~n~l~~~~------~l~~l~~L~~L~l~~n-- 183 (308)
T 1h6u_A 114 LTST-QITDVTP-LAGLSNLQVLYLDLNQITNISPLAGLTNLQYLSIGNAQVSDLT------PLANLSKLTTLKADDN-- 183 (308)
T ss_dssp CTTS-CCCCCGG-GTTCTTCCEEECCSSCCCCCGGGGGCTTCCEEECCSSCCCCCG------GGTTCTTCCEEECCSS--
T ss_pred CCCC-CCCCchh-hcCCCCCCEEECCCCccCcCccccCCCCccEEEccCCcCCCCh------hhcCCCCCCEEECCCC--
Confidence 8888 4555654 77888888888888 6666665556788888888888665432 2677888888888886
Q ss_pred CCccCCccccccCCCCCCCCCcceEEeccCCCCcccccccccCCCCCeEEecCCCCCCccCC
Q 035579 676 DMVSFPPEDKRLGTALPLPASLTDLEIGRFPNLERLSSSIVDLQNLTELCLRDCPKLKYFPE 737 (814)
Q Consensus 676 ~l~~i~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~l~~L~~L~l~~c~~l~~lp~ 737 (814)
.+..++. . ..+++|++|++++ +.++.++ .+..+++|+.|++++| .++..|.
T Consensus 184 ~l~~~~~-l-------~~l~~L~~L~L~~-N~l~~~~-~l~~l~~L~~L~l~~N-~i~~~~~ 234 (308)
T 1h6u_A 184 KISDISP-L-------ASLPNLIEVHLKN-NQISDVS-PLANTSNLFIVTLTNQ-TITNQPV 234 (308)
T ss_dssp CCCCCGG-G-------GGCTTCCEEECTT-SCCCBCG-GGTTCTTCCEEEEEEE-EEECCCE
T ss_pred ccCcChh-h-------cCCCCCCEEEccC-CccCccc-cccCCCCCCEEEccCC-eeecCCe
Confidence 5666654 2 3577888888888 6777777 4777888888888874 4665554
No 84
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.65 E-value=8.3e-16 Score=159.50 Aligned_cols=192 Identities=16% Similarity=0.171 Sum_probs=92.9
Q ss_pred CCccEEeecCCCCcccccccCCCcccccEEEEeccCCcchhhHhhcCCCCcceEeecccCCcccccccCCCCCCccEEEe
Q 035579 494 SILEHLSIVGCPSLTCIFSKNELPATLESLSVYKCSKLESIAERLDNNTSLETIGINFCENLKILPSGLHNLRQLREITI 573 (814)
Q Consensus 494 ~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l 573 (814)
++|++|+++++.. .. ++....+++|+.|++++|.... ++. +..+++|++|++++|.+.+. ..+..+++|++|++
T Consensus 41 ~~L~~L~l~~~~i-~~-l~~~~~l~~L~~L~L~~n~i~~-~~~-~~~l~~L~~L~L~~n~l~~~--~~~~~l~~L~~L~l 114 (308)
T 1h6u_A 41 DGITTLSAFGTGV-TT-IEGVQYLNNLIGLELKDNQITD-LAP-LKNLTKITELELSGNPLKNV--SAIAGLQSIKTLDL 114 (308)
T ss_dssp HTCCEEECTTSCC-CC-CTTGGGCTTCCEEECCSSCCCC-CGG-GTTCCSCCEEECCSCCCSCC--GGGTTCTTCCEEEC
T ss_pred CCcCEEEeeCCCc-cC-chhhhccCCCCEEEccCCcCCC-Chh-HccCCCCCEEEccCCcCCCc--hhhcCCCCCCEEEC
Confidence 3455555555432 22 2223334455555555553332 222 55555555555555554432 23555555555555
Q ss_pred cCCCCceecCCCCCCCCCcceEeeccccccccccccccCCCCcceEEecC-ccCccccCCCCCceeEEEecCCcchhhhh
Q 035579 574 QRCGNLVSFPEGGLPCAKLSELRIFQCERLEALPKGLHNLTSLQELTIGG-ALPSLEEDGLPTNLHSLDIRGNMEIWKSM 652 (814)
Q Consensus 574 ~~~~~l~~~~~~~~~l~~L~~L~l~~~~~l~~lp~~~~~l~~L~~L~l~~-~~~~l~~~~~~~~L~~L~l~~n~~~~~~~ 652 (814)
++| .+..++. +..+++|++|++++| .++.++. +..+++|+.|++++ .+..++....+++|++|++++|......
T Consensus 115 ~~n-~l~~~~~-l~~l~~L~~L~l~~n-~l~~~~~-l~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~l~~n~l~~~~- 189 (308)
T 1h6u_A 115 TST-QITDVTP-LAGLSNLQVLYLDLN-QITNISP-LAGLTNLQYLSIGNAQVSDLTPLANLSKLTTLKADDNKISDIS- 189 (308)
T ss_dssp TTS-CCCCCGG-GTTCTTCCEEECCSS-CCCCCGG-GGGCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCCCG-
T ss_pred CCC-CCCCchh-hcCCCCCCEEECCCC-ccCcCcc-ccCCCCccEEEccCCcCCCChhhcCCCCCCEEECCCCccCcCh-
Confidence 555 3333432 445555555555555 3333332 45555555555555 4444444444555555555555543321
Q ss_pred hhcccccCCCCcccEEEEecCCCCCccCCccccccCCCCCCCCCcceEEeccCCCCcccc
Q 035579 653 IERGRGFHRFSSLRHLTIDGCDDDMVSFPPEDKRLGTALPLPASLTDLEIGRFPNLERLS 712 (814)
Q Consensus 653 ~~~~~~l~~l~~L~~L~l~~~~~~l~~i~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~ 712 (814)
.+..+++|++|++++| .+..++. . ..+++|+.|++++ +.++..|
T Consensus 190 -----~l~~l~~L~~L~L~~N--~l~~~~~-l-------~~l~~L~~L~l~~-N~i~~~~ 233 (308)
T 1h6u_A 190 -----PLASLPNLIEVHLKNN--QISDVSP-L-------ANTSNLFIVTLTN-QTITNQP 233 (308)
T ss_dssp -----GGGGCTTCCEEECTTS--CCCBCGG-G-------TTCTTCCEEEEEE-EEEECCC
T ss_pred -----hhcCCCCCCEEEccCC--ccCcccc-c-------cCCCCCCEEEccC-CeeecCC
Confidence 1445555555555554 3444432 1 2455555555555 3444444
No 85
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.64 E-value=6.5e-16 Score=160.85 Aligned_cols=222 Identities=15% Similarity=0.111 Sum_probs=168.5
Q ss_pred CCccEEeecCCCCcccccc---cCCCcccccEEEEeccCCcchhhHhh--cCCCCcceEeecccCCccccc----ccCCC
Q 035579 494 SILEHLSIVGCPSLTCIFS---KNELPATLESLSVYKCSKLESIAERL--DNNTSLETIGINFCENLKILP----SGLHN 564 (814)
Q Consensus 494 ~~L~~L~l~~~~~l~~~~~---~~~~~~~L~~L~l~~~~~~~~~~~~~--~~l~~L~~L~L~~n~~~~~~~----~~~~~ 564 (814)
..++.+.+.++......+. .....++|++|++++|...+..|..+ ..+++|++|++++|.+.+..+ ..+..
T Consensus 64 ~~l~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~ 143 (310)
T 4glp_A 64 LRVRRLTVGAAQVPAQLLVGALRVLAYSRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWL 143 (310)
T ss_dssp CCCCEEEECSCCCBHHHHHHHHHHHHHSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTB
T ss_pred cceeEEEEeCCcCCHHHHHHHHHhcccCceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhh
Confidence 3578888887654321111 11123469999999998888888877 899999999999999987544 34557
Q ss_pred CCCccEEEecCCCCceecCCCCCCCCCcceEeecccccccc--cc--ccccCCCCcceEEecC-ccCcccc-----CCCC
Q 035579 565 LRQLREITIQRCGNLVSFPEGGLPCAKLSELRIFQCERLEA--LP--KGLHNLTSLQELTIGG-ALPSLEE-----DGLP 634 (814)
Q Consensus 565 l~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~~~~l~~--lp--~~~~~l~~L~~L~l~~-~~~~l~~-----~~~~ 634 (814)
+++|++|++++|......+..+..+++|++|++++|+..+. ++ ..+..+++|++|++++ .+..++. ...+
T Consensus 144 ~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~~l 223 (310)
T 4glp_A 144 KPGLKVLSIAQAHSPAFSCEQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMETPTGVCAALAAAG 223 (310)
T ss_dssp CSCCCEEEEECCSSCCCCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCCHHHHHHHHHHHT
T ss_pred ccCCCEEEeeCCCcchhhHHHhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCchHHHHHHHHhcC
Confidence 99999999999955444446788899999999999964432 32 2347899999999999 7765543 2346
Q ss_pred CceeEEEecCCcchhhhhhhcccccCCC---CcccEEEEecCCCCCccCCccccccCCCCCCCCCcceEEeccCCCCccc
Q 035579 635 TNLHSLDIRGNMEIWKSMIERGRGFHRF---SSLRHLTIDGCDDDMVSFPPEDKRLGTALPLPASLTDLEIGRFPNLERL 711 (814)
Q Consensus 635 ~~L~~L~l~~n~~~~~~~~~~~~~l~~l---~~L~~L~l~~~~~~l~~i~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l 711 (814)
++|++|++++|.+....+ ..+..+ ++|++|++++| .+..+|... +++|++|++++ |.++.+
T Consensus 224 ~~L~~L~Ls~N~l~~~~p----~~~~~~~~~~~L~~L~Ls~N--~l~~lp~~~---------~~~L~~L~Ls~-N~l~~~ 287 (310)
T 4glp_A 224 VQPHSLDLSHNSLRATVN----PSAPRCMWSSALNSLNLSFA--GLEQVPKGL---------PAKLRVLDLSS-NRLNRA 287 (310)
T ss_dssp CCCSSEECTTSCCCCCCC----SCCSSCCCCTTCCCEECCSS--CCCSCCSCC---------CSCCSCEECCS-CCCCSC
T ss_pred CCCCEEECCCCCCCccch----hhHHhccCcCcCCEEECCCC--CCCchhhhh---------cCCCCEEECCC-CcCCCC
Confidence 899999999998776533 334444 79999999998 777888865 48999999999 789988
Q ss_pred ccccccCCCCCeEEecCCCCCC
Q 035579 712 SSSIVDLQNLTELCLRDCPKLK 733 (814)
Q Consensus 712 ~~~~~~l~~L~~L~l~~c~~l~ 733 (814)
|. +..+++|+.|+++++ .++
T Consensus 288 ~~-~~~l~~L~~L~L~~N-~l~ 307 (310)
T 4glp_A 288 PQ-PDELPEVDNLTLDGN-PFL 307 (310)
T ss_dssp CC-TTSCCCCSCEECSST-TTS
T ss_pred ch-hhhCCCccEEECcCC-CCC
Confidence 74 678899999999995 454
No 86
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.64 E-value=4.1e-15 Score=157.55 Aligned_cols=219 Identities=21% Similarity=0.190 Sum_probs=169.0
Q ss_pred cccccEEEEeccCCcchhhHhhcCCCCcceEeecccCCccccc-ccCCCCCCccEEEecCCCCceecC-CCCCCCCCcce
Q 035579 517 PATLESLSVYKCSKLESIAERLDNNTSLETIGINFCENLKILP-SGLHNLRQLREITIQRCGNLVSFP-EGGLPCAKLSE 594 (814)
Q Consensus 517 ~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~-~~~~~l~~L~~L~l~~~~~l~~~~-~~~~~l~~L~~ 594 (814)
++++++|++++|.....-+..|.++++|++|+|++|.+.+.+| ..|.++++++++...++..+..++ ..+..+++|++
T Consensus 29 ~~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~N~l~~l~~~~f~~l~~L~~ 108 (350)
T 4ay9_X 29 PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQY 108 (350)
T ss_dssp CTTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEETTCCEECTTSBCCCTTCCE
T ss_pred CCCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccCCcccccCchhhhhcccccc
Confidence 4578889998876554444578999999999999999877665 467889888876655544677775 46788999999
Q ss_pred Eeecccccccccc-ccccCCCCcceEEecC--ccCccccC---CCCCceeEEEecCCcchhhhhhhcccccCCCCcccEE
Q 035579 595 LRIFQCERLEALP-KGLHNLTSLQELTIGG--ALPSLEED---GLPTNLHSLDIRGNMEIWKSMIERGRGFHRFSSLRHL 668 (814)
Q Consensus 595 L~l~~~~~l~~lp-~~~~~l~~L~~L~l~~--~~~~l~~~---~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~l~~L~~L 668 (814)
|++++| .++.+| ..+....++..+++.+ .+..++.. .....++.|++++|.+..... ......+|++|
T Consensus 109 L~l~~n-~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~i~~i~~-----~~f~~~~L~~l 182 (350)
T 4ay9_X 109 LLISNT-GIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQEIHN-----SAFNGTQLDEL 182 (350)
T ss_dssp EEEEEE-CCSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCCEECT-----TSSTTEEEEEE
T ss_pred cccccc-ccccCCchhhcccchhhhhhhccccccccccccchhhcchhhhhhccccccccCCCh-----hhccccchhHH
Confidence 999998 455554 3555667788888876 66666543 234579999999998765432 33456789999
Q ss_pred EEecCCCCCccCCccccccCCCCCCCCCcceEEeccCCCCcccccccccCCCCCeEEecCCCCCCccCCCCCcCCccEEe
Q 035579 669 TIDGCDDDMVSFPPEDKRLGTALPLPASLTDLEIGRFPNLERLSSSIVDLQNLTELCLRDCPKLKYFPEKGLPSSLLRLS 748 (814)
Q Consensus 669 ~l~~~~~~l~~i~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~l~~L~~L~l~~c~~l~~lp~~~l~~~L~~L~ 748 (814)
++.++ ..++.+|.+.+ ..+++|++|++++ |+++.+|. ..+.+|++|.+.+|+.++.+|.-.-+++|+.++
T Consensus 183 ~l~~~-n~l~~i~~~~f------~~l~~L~~LdLs~-N~l~~lp~--~~~~~L~~L~~l~~~~l~~lP~l~~l~~L~~l~ 252 (350)
T 4ay9_X 183 NLSDN-NNLEELPNDVF------HGASGPVILDISR-TRIHSLPS--YGLENLKKLRARSTYNLKKLPTLEKLVALMEAS 252 (350)
T ss_dssp ECTTC-TTCCCCCTTTT------TTEECCSEEECTT-SCCCCCCS--SSCTTCCEEECTTCTTCCCCCCTTTCCSCCEEE
T ss_pred hhccC-CcccCCCHHHh------ccCcccchhhcCC-CCcCccCh--hhhccchHhhhccCCCcCcCCCchhCcChhhCc
Confidence 99873 38999998764 5789999999999 79999996 347889999999999999999855588999999
Q ss_pred ecC
Q 035579 749 ILS 751 (814)
Q Consensus 749 i~~ 751 (814)
+.+
T Consensus 253 l~~ 255 (350)
T 4ay9_X 253 LTY 255 (350)
T ss_dssp CSC
T ss_pred CCC
Confidence 875
No 87
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.62 E-value=5.2e-16 Score=158.12 Aligned_cols=86 Identities=22% Similarity=0.235 Sum_probs=41.2
Q ss_pred hhcCCCCcceEeecccCCcccccccCCCCCCccEEEecCCCCceecCC-CCCCCCCcceEeeccccccccccccccCCCC
Q 035579 537 RLDNNTSLETIGINFCENLKILPSGLHNLRQLREITIQRCGNLVSFPE-GGLPCAKLSELRIFQCERLEALPKGLHNLTS 615 (814)
Q Consensus 537 ~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~-~~~~l~~L~~L~l~~~~~l~~lp~~~~~l~~ 615 (814)
.+..+++|++|++++|.+.+..+..+..+++|++|++++| .+..++. .+..+++|++|++++|......|..+..+++
T Consensus 128 ~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~ 206 (272)
T 3rfs_A 128 VFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYN-QLQSLPEGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTS 206 (272)
T ss_dssp TTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTT
T ss_pred HhccCCCCCEEECCCCccCccCHHHhccCccCCEEECCCC-CcCccCHHHhcCCccCCEEECCCCcCCccCHHHHhCCcC
Confidence 3445555555555555555444444555555555555555 2333333 2344555555555555322222223444444
Q ss_pred cceEEecC
Q 035579 616 LQELTIGG 623 (814)
Q Consensus 616 L~~L~l~~ 623 (814)
|+.|++++
T Consensus 207 L~~L~l~~ 214 (272)
T 3rfs_A 207 LQYIWLHD 214 (272)
T ss_dssp CCEEECCS
T ss_pred CCEEEccC
Confidence 44444443
No 88
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.60 E-value=8e-15 Score=149.30 Aligned_cols=92 Identities=11% Similarity=0.043 Sum_probs=69.2
Q ss_pred ccccEEEEeccCCcchhhHhhcCCCCcceEeecccCCcccccccCCCCCCccEEEecCCCCceecCCCCCCCCCcceEee
Q 035579 518 ATLESLSVYKCSKLESIAERLDNNTSLETIGINFCENLKILPSGLHNLRQLREITIQRCGNLVSFPEGGLPCAKLSELRI 597 (814)
Q Consensus 518 ~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l 597 (814)
++|+.|++++|......+..+..+++|+.|++++|.+.+..+..+..+++|++|++++|+.. +.+++|+.+++
T Consensus 157 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~-------~~~~~l~~l~~ 229 (272)
T 3rfs_A 157 TNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWD-------CTCPGIRYLSE 229 (272)
T ss_dssp TTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBC-------CCTTTTHHHHH
T ss_pred ccCCEEECCCCCcCccCHHHhcCCccCCEEECCCCcCCccCHHHHhCCcCCCEEEccCCCcc-------ccCcHHHHHHH
Confidence 46777777777666555556788888999999988888877777888889999999888533 33557888888
Q ss_pred ccccccccccccccCCCCc
Q 035579 598 FQCERLEALPKGLHNLTSL 616 (814)
Q Consensus 598 ~~~~~l~~lp~~~~~l~~L 616 (814)
..|...+.+|.+++.++..
T Consensus 230 ~~n~~~g~ip~~~~~~~~~ 248 (272)
T 3rfs_A 230 WINKHSGVVRNSAGSVAPD 248 (272)
T ss_dssp HHHHTGGGBBCTTSCBCGG
T ss_pred HHHhCCCcccCcccccCCC
Confidence 8887777888777665543
No 89
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.57 E-value=4e-16 Score=164.83 Aligned_cols=200 Identities=15% Similarity=0.123 Sum_probs=91.9
Q ss_pred CCcceEeecccCCcccccccCCCCCCccEEEecCCCCcee-cCCCCCCCCCcceEeeccccccccccccccCCCCcceEE
Q 035579 542 TSLETIGINFCENLKILPSGLHNLRQLREITIQRCGNLVS-FPEGGLPCAKLSELRIFQCERLEALPKGLHNLTSLQELT 620 (814)
Q Consensus 542 ~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~~~~l~~-~~~~~~~l~~L~~L~l~~~~~l~~lp~~~~~l~~L~~L~ 620 (814)
++++.+++++|.+.+..+. +..+++|++|++++|..... ++..+..+++|++|++++|......+..++.+++|++|+
T Consensus 70 ~~l~~L~l~~n~l~~~~~~-~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~ 148 (336)
T 2ast_B 70 QGVIAFRCPRSFMDQPLAE-HFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLN 148 (336)
T ss_dssp TTCSEEECTTCEECSCCCS-CCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEE
T ss_pred ccceEEEcCCccccccchh-hccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEEeCcCcccCHHHHHHHhcCCCCCEEE
Confidence 4555555555555444333 33455555555555532111 333344455555555555533333444455555555555
Q ss_pred ecC--ccCc--ccc-CCCCCceeEEEecCC-cchhhhhhhcccccCCCC-cccEEEEecCCCCC--ccCCccccccCCCC
Q 035579 621 IGG--ALPS--LEE-DGLPTNLHSLDIRGN-MEIWKSMIERGRGFHRFS-SLRHLTIDGCDDDM--VSFPPEDKRLGTAL 691 (814)
Q Consensus 621 l~~--~~~~--l~~-~~~~~~L~~L~l~~n-~~~~~~~~~~~~~l~~l~-~L~~L~l~~~~~~l--~~i~~~~~~~~~~~ 691 (814)
+++ .+.. ++. ...+++|++|++++| ........ ..+..++ +|++|++++|...+ ..++...
T Consensus 149 L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~---~~~~~l~~~L~~L~l~~~~~~~~~~~l~~~~------- 218 (336)
T 2ast_B 149 LSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQ---VAVAHVSETITQLNLSGYRKNLQKSDLSTLV------- 218 (336)
T ss_dssp CTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHH---HHHHHSCTTCCEEECCSCGGGSCHHHHHHHH-------
T ss_pred CCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHH---HHHHhcccCCCEEEeCCCcccCCHHHHHHHH-------
Confidence 555 1221 221 223455666666665 33322111 2344555 66666665541011 2233322
Q ss_pred CCCCCcceEEeccCCCCc-ccccccccCCCCCeEEecCCCCCCccCCCCC--cCCccEEeecCC
Q 035579 692 PLPASLTDLEIGRFPNLE-RLSSSIVDLQNLTELCLRDCPKLKYFPEKGL--PSSLLRLSILSC 752 (814)
Q Consensus 692 ~~~~~L~~L~l~~~~~l~-~l~~~~~~l~~L~~L~l~~c~~l~~lp~~~l--~~~L~~L~i~~c 752 (814)
..+++|++|++++|..++ ..+..+..+++|++|++++|..+..-....+ +++|++|++++|
T Consensus 219 ~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~ 282 (336)
T 2ast_B 219 RRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGI 282 (336)
T ss_dssp HHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCTTCCGGGGGGGGGCTTCCEEECTTS
T ss_pred hhCCCCCEEeCCCCCcCCHHHHHHHhCCCCCCEeeCCCCCCCCHHHHHHHhcCCCCCEEeccCc
Confidence 234566666666644333 3333555556666666666542221110011 455666666665
No 90
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.56 E-value=4.6e-14 Score=141.81 Aligned_cols=173 Identities=17% Similarity=0.199 Sum_probs=95.6
Q ss_pred CcceEeecccCCcccccccCCCCCCccEEEecCCCCceecCCCCCCCCCcceEeeccccccccccccccCCCCcceEEec
Q 035579 543 SLETIGINFCENLKILPSGLHNLRQLREITIQRCGNLVSFPEGGLPCAKLSELRIFQCERLEALPKGLHNLTSLQELTIG 622 (814)
Q Consensus 543 ~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~~~~l~~lp~~~~~l~~L~~L~l~ 622 (814)
+.+.++++++.+. .+|..+. +++++|++++|......+..+..+++|++|++++|......+..+..+
T Consensus 15 ~~~~l~~~~~~l~-~~p~~~~--~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l--------- 82 (251)
T 3m19_A 15 GKKEVDCQGKSLD-SVPSGIP--ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDL--------- 82 (251)
T ss_dssp GGTEEECTTCCCS-SCCSCCC--TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTC---------
T ss_pred CCeEEecCCCCcc-ccCCCCC--CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccC---------
Confidence 3445555554443 2233222 355555555553222222234455555555555553222222233444
Q ss_pred CccCccccCCCCCceeEEEecCCcchhhhhhhcccccCCCCcccEEEEecCCCCCccCCccccccCCCCCCCCCcceEEe
Q 035579 623 GALPSLEEDGLPTNLHSLDIRGNMEIWKSMIERGRGFHRFSSLRHLTIDGCDDDMVSFPPEDKRLGTALPLPASLTDLEI 702 (814)
Q Consensus 623 ~~~~~l~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~l~~i~~~~~~~~~~~~~~~~L~~L~l 702 (814)
++|++|++++|.+..... ..+..+++|++|++++| .+..+|...+ ..+++|++|++
T Consensus 83 ------------~~L~~L~L~~n~l~~~~~----~~~~~l~~L~~L~L~~N--~l~~~~~~~~------~~l~~L~~L~L 138 (251)
T 3m19_A 83 ------------TELGTLGLANNQLASLPL----GVFDHLTQLDKLYLGGN--QLKSLPSGVF------DRLTKLKELRL 138 (251)
T ss_dssp ------------TTCCEEECTTSCCCCCCT----TTTTTCTTCCEEECCSS--CCCCCCTTTT------TTCTTCCEEEC
T ss_pred ------------CcCCEEECCCCcccccCh----hHhcccCCCCEEEcCCC--cCCCcChhHh------ccCCcccEEEC
Confidence 555555555555443322 44566677777777775 5566665432 34677777777
Q ss_pred ccCCCCccccc-ccccCCCCCeEEecCCCCCCccCCCCC--cCCccEEeecCCc
Q 035579 703 GRFPNLERLSS-SIVDLQNLTELCLRDCPKLKYFPEKGL--PSSLLRLSILSCP 753 (814)
Q Consensus 703 ~~~~~l~~l~~-~~~~l~~L~~L~l~~c~~l~~lp~~~l--~~~L~~L~i~~c~ 753 (814)
++ +.++.+|. .+..+++|++|++++ ++++.++...+ +++|++|++++|+
T Consensus 139 s~-N~l~~~~~~~~~~l~~L~~L~L~~-N~l~~~~~~~~~~l~~L~~L~l~~N~ 190 (251)
T 3m19_A 139 NT-NQLQSIPAGAFDKLTNLQTLSLST-NQLQSVPHGAFDRLGKLQTITLFGNQ 190 (251)
T ss_dssp CS-SCCCCCCTTTTTTCTTCCEEECCS-SCCSCCCTTTTTTCTTCCEEECCSCC
T ss_pred cC-CcCCccCHHHcCcCcCCCEEECCC-CcCCccCHHHHhCCCCCCEEEeeCCc
Confidence 77 56777666 566777777777777 36666665444 5677777777765
No 91
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.55 E-value=6.3e-14 Score=140.82 Aligned_cols=170 Identities=19% Similarity=0.266 Sum_probs=99.5
Q ss_pred ccEEEEeccCCcchhhHhhcCCCCcceEeecccCCcccccccCCCCCCccEEEecCCCCceecC-CCCCCCCCcceEeec
Q 035579 520 LESLSVYKCSKLESIAERLDNNTSLETIGINFCENLKILPSGLHNLRQLREITIQRCGNLVSFP-EGGLPCAKLSELRIF 598 (814)
Q Consensus 520 L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~-~~~~~l~~L~~L~l~ 598 (814)
.++++++++ .+..+|..+. ++++.|++++|.+.+..+..+..+++|++|++++|. +..++ ..+..+++|++|+++
T Consensus 16 ~~~l~~~~~-~l~~~p~~~~--~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~L~ 91 (251)
T 3m19_A 16 KKEVDCQGK-SLDSVPSGIP--ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQ-LQTLSAGVFDDLTELGTLGLA 91 (251)
T ss_dssp GTEEECTTC-CCSSCCSCCC--TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSC-CCCCCTTTTTTCTTCCEEECT
T ss_pred CeEEecCCC-CccccCCCCC--CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCc-CCccCHhHhccCCcCCEEECC
Confidence 445555543 3334443333 467777777777777666667777777777777763 33333 346667777777777
Q ss_pred ccccccccc-ccccCCCCcceEEecC-ccCccccCCCCCceeEEEecCCcchhhhhhhcccccCCCCcccEEEEecCCCC
Q 035579 599 QCERLEALP-KGLHNLTSLQELTIGG-ALPSLEEDGLPTNLHSLDIRGNMEIWKSMIERGRGFHRFSSLRHLTIDGCDDD 676 (814)
Q Consensus 599 ~~~~l~~lp-~~~~~l~~L~~L~l~~-~~~~l~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~ 676 (814)
+|. ++.+| ..+..+++|++|++++ .+..++. ..+..+++|++|++++| .
T Consensus 92 ~n~-l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~--------------------------~~~~~l~~L~~L~Ls~N--~ 142 (251)
T 3m19_A 92 NNQ-LASLPLGVFDHLTQLDKLYLGGNQLKSLPS--------------------------GVFDRLTKLKELRLNTN--Q 142 (251)
T ss_dssp TSC-CCCCCTTTTTTCTTCCEEECCSSCCCCCCT--------------------------TTTTTCTTCCEEECCSS--C
T ss_pred CCc-ccccChhHhcccCCCCEEEcCCCcCCCcCh--------------------------hHhccCCcccEEECcCC--c
Confidence 773 33333 3444554554444444 3332221 23455666666666665 5
Q ss_pred CccCCccccccCCCCCCCCCcceEEeccCCCCccccc-ccccCCCCCeEEecCC
Q 035579 677 MVSFPPEDKRLGTALPLPASLTDLEIGRFPNLERLSS-SIVDLQNLTELCLRDC 729 (814)
Q Consensus 677 l~~i~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~-~~~~l~~L~~L~l~~c 729 (814)
+..+|...+ ..+++|++|++++ |.++.++. .+..+++|+.|+++++
T Consensus 143 l~~~~~~~~------~~l~~L~~L~L~~-N~l~~~~~~~~~~l~~L~~L~l~~N 189 (251)
T 3m19_A 143 LQSIPAGAF------DKLTNLQTLSLST-NQLQSVPHGAFDRLGKLQTITLFGN 189 (251)
T ss_dssp CCCCCTTTT------TTCTTCCEEECCS-SCCSCCCTTTTTTCTTCCEEECCSC
T ss_pred CCccCHHHc------CcCcCCCEEECCC-CcCCccCHHHHhCCCCCCEEEeeCC
Confidence 555555321 3456677777776 56666665 5666777777777774
No 92
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.53 E-value=1.9e-15 Score=159.60 Aligned_cols=107 Identities=13% Similarity=0.268 Sum_probs=73.7
Q ss_pred cccccEEEEeccCCcch-hhHhhcCCCCcceEeecccCCcccccccCCCCCCccEEEecCCCCcee--cCCCCCCCCCcc
Q 035579 517 PATLESLSVYKCSKLES-IAERLDNNTSLETIGINFCENLKILPSGLHNLRQLREITIQRCGNLVS--FPEGGLPCAKLS 593 (814)
Q Consensus 517 ~~~L~~L~l~~~~~~~~-~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~~~~l~~--~~~~~~~l~~L~ 593 (814)
.++|++|++++|..... ++..+..+++|++|++++|.+....+..+..+++|++|++++|..++. ++..+..+++|+
T Consensus 92 ~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~ 171 (336)
T 2ast_B 92 PFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLD 171 (336)
T ss_dssp CBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCC
T ss_pred CCCCCEEEccCCCcCHHHHHHHHhhCCCCCEEeCcCcccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCC
Confidence 35677777777765544 777788888888888888877766777777788888888888754442 454456677888
Q ss_pred eEeecccccccc--ccccccCCC-CcceEEecC
Q 035579 594 ELRIFQCERLEA--LPKGLHNLT-SLQELTIGG 623 (814)
Q Consensus 594 ~L~l~~~~~l~~--lp~~~~~l~-~L~~L~l~~ 623 (814)
+|++++|..++. ++..+..++ +|++|++++
T Consensus 172 ~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l~~ 204 (336)
T 2ast_B 172 ELNLSWCFDFTEKHVQVAVAHVSETITQLNLSG 204 (336)
T ss_dssp EEECCCCTTCCHHHHHHHHHHSCTTCCEEECCS
T ss_pred EEcCCCCCCcChHHHHHHHHhcccCCCEEEeCC
Confidence 888888744443 455555555 555555554
No 93
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.52 E-value=2.7e-14 Score=146.70 Aligned_cols=152 Identities=17% Similarity=0.208 Sum_probs=76.1
Q ss_pred CCCCCCccEEEecCCCCceecCCCCCCCCCcceEeeccccccccccccccCCCCcceEEecC-ccCccccCCCCCceeEE
Q 035579 562 LHNLRQLREITIQRCGNLVSFPEGGLPCAKLSELRIFQCERLEALPKGLHNLTSLQELTIGG-ALPSLEEDGLPTNLHSL 640 (814)
Q Consensus 562 ~~~l~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~~~~l~~lp~~~~~l~~L~~L~l~~-~~~~l~~~~~~~~L~~L 640 (814)
+..+++|++|++++| .+..++. +..+++|++|++++| .++.+| .+..+++|++|++++ .+..++....+++|++|
T Consensus 64 ~~~l~~L~~L~L~~n-~l~~~~~-l~~l~~L~~L~l~~n-~l~~~~-~l~~l~~L~~L~L~~n~i~~~~~l~~l~~L~~L 139 (291)
T 1h6t_A 64 IQYLPNVTKLFLNGN-KLTDIKP-LANLKNLGWLFLDEN-KVKDLS-SLKDLKKLKSLSLEHNGISDINGLVHLPQLESL 139 (291)
T ss_dssp GGGCTTCCEEECCSS-CCCCCGG-GTTCTTCCEEECCSS-CCCCGG-GGTTCTTCCEEECTTSCCCCCGGGGGCTTCCEE
T ss_pred HhcCCCCCEEEccCC-ccCCCcc-cccCCCCCEEECCCC-cCCCCh-hhccCCCCCEEECCCCcCCCChhhcCCCCCCEE
Confidence 334444444444444 2233332 334444444444444 233332 244444444444444 33333333334555555
Q ss_pred EecCCcchhhhhhhcccccCCCCcccEEEEecCCCCCccCCccccccCCCCCCCCCcceEEeccCCCCcccccccccCCC
Q 035579 641 DIRGNMEIWKSMIERGRGFHRFSSLRHLTIDGCDDDMVSFPPEDKRLGTALPLPASLTDLEIGRFPNLERLSSSIVDLQN 720 (814)
Q Consensus 641 ~l~~n~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~l~~i~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~l~~ 720 (814)
++++|..... ..+..+++|++|++++| .+..++. . ..+++|+.|++++ +.++.++ .+..+++
T Consensus 140 ~l~~n~l~~~------~~l~~l~~L~~L~L~~N--~l~~~~~-l-------~~l~~L~~L~L~~-N~i~~l~-~l~~l~~ 201 (291)
T 1h6t_A 140 YLGNNKITDI------TVLSRLTKLDTLSLEDN--QISDIVP-L-------AGLTKLQNLYLSK-NHISDLR-ALAGLKN 201 (291)
T ss_dssp ECCSSCCCCC------GGGGGCTTCSEEECCSS--CCCCCGG-G-------TTCTTCCEEECCS-SCCCBCG-GGTTCTT
T ss_pred EccCCcCCcc------hhhccCCCCCEEEccCC--ccccchh-h-------cCCCccCEEECCC-CcCCCCh-hhccCCC
Confidence 5665554433 23556666666666665 4444443 2 3466677777776 5666665 3666777
Q ss_pred CCeEEecCCCCCCccC
Q 035579 721 LTELCLRDCPKLKYFP 736 (814)
Q Consensus 721 L~~L~l~~c~~l~~lp 736 (814)
|+.|++++| .+...|
T Consensus 202 L~~L~l~~n-~i~~~~ 216 (291)
T 1h6t_A 202 LDVLELFSQ-ECLNKP 216 (291)
T ss_dssp CSEEEEEEE-EEECCC
T ss_pred CCEEECcCC-cccCCc
Confidence 777777764 344433
No 94
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.51 E-value=2.4e-15 Score=162.02 Aligned_cols=210 Identities=15% Similarity=0.080 Sum_probs=132.2
Q ss_pred cccccEEEEeccCC---cchhhH-------hhcCCCCcceEeecccCCcc----cccccCCCCCCccEEEecCCCCcee-
Q 035579 517 PATLESLSVYKCSK---LESIAE-------RLDNNTSLETIGINFCENLK----ILPSGLHNLRQLREITIQRCGNLVS- 581 (814)
Q Consensus 517 ~~~L~~L~l~~~~~---~~~~~~-------~~~~l~~L~~L~L~~n~~~~----~~~~~~~~l~~L~~L~l~~~~~l~~- 581 (814)
.++|++|++++|.. ...+|. .+..+++|++|++++|.+.. .+|..+..+++|++|++++|..-..
T Consensus 59 ~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~ 138 (386)
T 2ca6_A 59 KKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQA 138 (386)
T ss_dssp CTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSCCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHH
T ss_pred CCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECCCCcCCHHHHHHHHHHHHhCCCCCEEECcCCCCCHHH
Confidence 45677777766522 223333 34677888888888887776 4666677788888888888743211
Q ss_pred ---cCCCCCCC---------CCcceEeecccccc-cccc---ccccCCCCcceEEecC-ccC------ccc-cCCCCCce
Q 035579 582 ---FPEGGLPC---------AKLSELRIFQCERL-EALP---KGLHNLTSLQELTIGG-ALP------SLE-EDGLPTNL 637 (814)
Q Consensus 582 ---~~~~~~~l---------~~L~~L~l~~~~~l-~~lp---~~~~~l~~L~~L~l~~-~~~------~l~-~~~~~~~L 637 (814)
++..+..+ ++|++|++++|... ..+| ..+..+++|+.|++++ .+. ..+ ....+++|
T Consensus 139 ~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L 218 (386)
T 2ca6_A 139 GAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQEL 218 (386)
T ss_dssp HHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTC
T ss_pred HHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHHHHHHHHHhCCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCc
Confidence 22122222 68888888887433 2344 3556777888888887 444 122 23446788
Q ss_pred eEEEecCCcchhhhhhhcccccCCCCcccEEEEecCCCCCcc-----CCccccccCCCCCCCCCcceEEeccCCCCcc--
Q 035579 638 HSLDIRGNMEIWKSMIERGRGFHRFSSLRHLTIDGCDDDMVS-----FPPEDKRLGTALPLPASLTDLEIGRFPNLER-- 710 (814)
Q Consensus 638 ~~L~l~~n~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~l~~-----i~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~-- 710 (814)
++|++++|.+........+..+..+++|++|++++| .+.. ++.... ...+++|++|++++ +.++.
T Consensus 219 ~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~L~~n--~i~~~~~~~l~~~l~-----~~~~~~L~~L~L~~-n~i~~~g 290 (386)
T 2ca6_A 219 KVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDC--LLSARGAAAVVDAFS-----KLENIGLQTLRLQY-NEIELDA 290 (386)
T ss_dssp CEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTC--CCCHHHHHHHHHHHH-----TCSSCCCCEEECCS-SCCBHHH
T ss_pred cEEECcCCCCCcHHHHHHHHHHccCCCcCEEECCCC--CCchhhHHHHHHHHh-----hccCCCeEEEECcC-CcCCHHH
Confidence 888888888753222222256778888888988887 3332 233220 01268888999988 56766
Q ss_pred ---ccccc-ccCCCCCeEEecCCCCCCcc
Q 035579 711 ---LSSSI-VDLQNLTELCLRDCPKLKYF 735 (814)
Q Consensus 711 ---l~~~~-~~l~~L~~L~l~~c~~l~~l 735 (814)
+|..+ .++++|++|++++| .++..
T Consensus 291 ~~~l~~~l~~~l~~L~~L~l~~N-~l~~~ 318 (386)
T 2ca6_A 291 VRTLKTVIDEKMPDLLFLELNGN-RFSEE 318 (386)
T ss_dssp HHHHHHHHHHHCTTCCEEECTTS-BSCTT
T ss_pred HHHHHHHHHhcCCCceEEEccCC-cCCcc
Confidence 77766 56889999999885 45443
No 95
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.49 E-value=1.5e-15 Score=161.75 Aligned_cols=227 Identities=15% Similarity=0.126 Sum_probs=133.8
Q ss_pred CCcccccEEEEeccCCcchhh----HhhcCCC-CcceEeecccCCcccccccCCCC-----CCccEEEecCCCCceecC-
Q 035579 515 ELPATLESLSVYKCSKLESIA----ERLDNNT-SLETIGINFCENLKILPSGLHNL-----RQLREITIQRCGNLVSFP- 583 (814)
Q Consensus 515 ~~~~~L~~L~l~~~~~~~~~~----~~~~~l~-~L~~L~L~~n~~~~~~~~~~~~l-----~~L~~L~l~~~~~l~~~~- 583 (814)
..+++|++|++++|......+ ..+..++ +|++|++++|.+....+..+..+ ++|++|++++|. ++..+
T Consensus 19 ~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~-l~~~~~ 97 (362)
T 3goz_A 19 SIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANVTSLNLSGNF-LSYKSS 97 (362)
T ss_dssp TSCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSC-GGGSCH
T ss_pred hCCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCCccEEECcCCc-CChHHH
Confidence 345568888888877555444 6677777 78888888887776655555443 788888888874 33322
Q ss_pred CC----CCCC-CCcceEeecccccccccc-cc----ccC-CCCcceEEecC-ccCc-----ccc-C-CCCCceeEEEecC
Q 035579 584 EG----GLPC-AKLSELRIFQCERLEALP-KG----LHN-LTSLQELTIGG-ALPS-----LEE-D-GLPTNLHSLDIRG 644 (814)
Q Consensus 584 ~~----~~~l-~~L~~L~l~~~~~l~~lp-~~----~~~-l~~L~~L~l~~-~~~~-----l~~-~-~~~~~L~~L~l~~ 644 (814)
.. +..+ ++|++|++++|. ++..+ .. +.. .++|++|++++ .+.. ++. . ...++|++|++++
T Consensus 98 ~~l~~~l~~~~~~L~~L~Ls~N~-l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~ 176 (362)
T 3goz_A 98 DELVKTLAAIPFTITVLDLGWND-FSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQILAAIPANVNSLNLRG 176 (362)
T ss_dssp HHHHHHHHTSCTTCCEEECCSSC-GGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTT
T ss_pred HHHHHHHHhCCCCccEEECcCCc-CCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHHHHhcCCccccEeeecC
Confidence 11 2333 678888888884 33332 22 333 25788888877 4432 111 1 1224788888888
Q ss_pred CcchhhhhhhcccccCCC-CcccEEEEecCCCCCcc-----CCccccccCCCCCCCCCcceEEeccCCCCccccc-----
Q 035579 645 NMEIWKSMIERGRGFHRF-SSLRHLTIDGCDDDMVS-----FPPEDKRLGTALPLPASLTDLEIGRFPNLERLSS----- 713 (814)
Q Consensus 645 n~~~~~~~~~~~~~l~~l-~~L~~L~l~~~~~~l~~-----i~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~----- 713 (814)
|.+...........+..+ ++|++|++++| .+.. ++.... ...++|++|++++ |.++..+.
T Consensus 177 n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N--~i~~~~~~~l~~~l~------~~~~~L~~L~Ls~-N~l~~~~~~~l~~ 247 (362)
T 3goz_A 177 NNLASKNCAELAKFLASIPASVTSLDLSAN--LLGLKSYAELAYIFS------SIPNHVVSLNLCL-NCLHGPSLENLKL 247 (362)
T ss_dssp SCGGGSCHHHHHHHHHTSCTTCCEEECTTS--CGGGSCHHHHHHHHH------HSCTTCCEEECCS-SCCCCCCHHHHHH
T ss_pred CCCchhhHHHHHHHHHhCCCCCCEEECCCC--CCChhHHHHHHHHHh------cCCCCceEEECcC-CCCCcHHHHHHHH
Confidence 876554432212234455 47888888876 4444 333221 1235788888887 56655432
Q ss_pred ccccCCCCCeEEecCCCCCCccCCC-------CC--cCCccEEeecCCc
Q 035579 714 SIVDLQNLTELCLRDCPKLKYFPEK-------GL--PSSLLRLSILSCP 753 (814)
Q Consensus 714 ~~~~l~~L~~L~l~~c~~l~~lp~~-------~l--~~~L~~L~i~~c~ 753 (814)
.+..+++|++|++++| .+..++.. .+ +++|++|++++++
T Consensus 248 ~~~~l~~L~~L~L~~n-~l~~i~~~~~~~l~~~~~~l~~L~~LdL~~N~ 295 (362)
T 3goz_A 248 LKDSLKHLQTVYLDYD-IVKNMSKEQCKALGAAFPNIQKIILVDKNGKE 295 (362)
T ss_dssp TTTTTTTCSEEEEEHH-HHTTCCHHHHHHHHTTSTTCCEEEEECTTSCB
T ss_pred HHhcCCCccEEEeccC-CccccCHHHHHHHHHHhccCCceEEEecCCCc
Confidence 3456677888888775 33322221 11 4567777777765
No 96
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.49 E-value=1.3e-13 Score=141.64 Aligned_cols=169 Identities=17% Similarity=0.168 Sum_probs=142.4
Q ss_pred CCCCCCccEEEecCCCCceecCCCCCCCCCcceEeeccccccccccccccCCCCcceEEecC-ccCccccCCCCCceeEE
Q 035579 562 LHNLRQLREITIQRCGNLVSFPEGGLPCAKLSELRIFQCERLEALPKGLHNLTSLQELTIGG-ALPSLEEDGLPTNLHSL 640 (814)
Q Consensus 562 ~~~l~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~~~~l~~lp~~~~~l~~L~~L~l~~-~~~~l~~~~~~~~L~~L 640 (814)
...+++|++|++++| .+..++ .+..+++|++|++++| .++.++. +..+++|+.|++++ .+..++....+++|++|
T Consensus 42 ~~~l~~L~~L~l~~~-~i~~~~-~~~~l~~L~~L~L~~n-~l~~~~~-l~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L 117 (291)
T 1h6t_A 42 QNELNSIDQIIANNS-DIKSVQ-GIQYLPNVTKLFLNGN-KLTDIKP-LANLKNLGWLFLDENKVKDLSSLKDLKKLKSL 117 (291)
T ss_dssp HHHHHTCCEEECTTS-CCCCCT-TGGGCTTCCEEECCSS-CCCCCGG-GTTCTTCCEEECCSSCCCCGGGGTTCTTCCEE
T ss_pred hhhcCcccEEEccCC-CcccCh-hHhcCCCCCEEEccCC-ccCCCcc-cccCCCCCEEECCCCcCCCChhhccCCCCCEE
Confidence 346788999999998 566675 4778899999999999 5666665 89999999999999 88888777888999999
Q ss_pred EecCCcchhhhhhhcccccCCCCcccEEEEecCCCCCccCCccccccCCCCCCCCCcceEEeccCCCCcccccccccCCC
Q 035579 641 DIRGNMEIWKSMIERGRGFHRFSSLRHLTIDGCDDDMVSFPPEDKRLGTALPLPASLTDLEIGRFPNLERLSSSIVDLQN 720 (814)
Q Consensus 641 ~l~~n~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~l~~i~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~l~~ 720 (814)
++++|.+... ..+..+++|+.|++++| .+..++. . ..+++|++|++++ +.++.++. +..+++
T Consensus 118 ~L~~n~i~~~------~~l~~l~~L~~L~l~~n--~l~~~~~-l-------~~l~~L~~L~L~~-N~l~~~~~-l~~l~~ 179 (291)
T 1h6t_A 118 SLEHNGISDI------NGLVHLPQLESLYLGNN--KITDITV-L-------SRLTKLDTLSLED-NQISDIVP-LAGLTK 179 (291)
T ss_dssp ECTTSCCCCC------GGGGGCTTCCEEECCSS--CCCCCGG-G-------GGCTTCSEEECCS-SCCCCCGG-GTTCTT
T ss_pred ECCCCcCCCC------hhhcCCCCCCEEEccCC--cCCcchh-h-------ccCCCCCEEEccC-Cccccchh-hcCCCc
Confidence 9999987664 35778999999999998 6666632 2 4689999999999 68888885 889999
Q ss_pred CCeEEecCCCCCCccCCCCCcCCccEEeecCCc
Q 035579 721 LTELCLRDCPKLKYFPEKGLPSSLLRLSILSCP 753 (814)
Q Consensus 721 L~~L~l~~c~~l~~lp~~~l~~~L~~L~i~~c~ 753 (814)
|+.|++++| .++.++.-.-+++|+.|++++|+
T Consensus 180 L~~L~L~~N-~i~~l~~l~~l~~L~~L~l~~n~ 211 (291)
T 1h6t_A 180 LQNLYLSKN-HISDLRALAGLKNLDVLELFSQE 211 (291)
T ss_dssp CCEEECCSS-CCCBCGGGTTCTTCSEEEEEEEE
T ss_pred cCEEECCCC-cCCCChhhccCCCCCEEECcCCc
Confidence 999999995 78988764448899999999986
No 97
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.49 E-value=7.1e-15 Score=156.56 Aligned_cols=120 Identities=14% Similarity=0.063 Sum_probs=74.6
Q ss_pred chhhhhhcCCCCCeEEEecCCCcccchhhHHHHHHHHhhhccc-cccEEEeeccCCccccccccCCC-----CCcceEee
Q 035579 323 SHNELLQDICSLRRLTIRSCPKLQSLVAEEEKDQQQQLCELSC-RLEYLILSCCEGLVKLPQSSLSL-----CSLREIGI 396 (814)
Q Consensus 323 ~~~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~l~~~~~-~L~~L~L~~~~~~~~~~~~~~~l-----~~L~~L~L 396 (814)
..+.++...++|++|++++| .+...+.......+..+ + +|++|++++|.+....+..+..+ ++|++|++
T Consensus 13 ~~~~~~~~~~~L~~L~Ls~n-~l~~~~~~~l~~~l~~~----~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~L 87 (362)
T 3goz_A 13 PVEEFTSIPHGVTSLDLSLN-NLYSISTVELIQAFANT----PASVTSLNLSGNSLGFKNSDELVQILAAIPANVTSLNL 87 (362)
T ss_dssp HHHHHHTSCTTCCEEECTTS-CGGGSCHHHHHHHHHTC----CTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEEC
T ss_pred HHHHHHhCCCCceEEEccCC-CCChHHHHHHHHHHHhC----CCceeEEECcCCCCCHHHHHHHHHHHhccCCCccEEEC
Confidence 34555555666888888886 47766654443444444 5 78888888887766555555543 78888888
Q ss_pred ecCCCCcccCC------CCCC-CCCcEEEecccCCCCCCchhhhc---CC-CCCccEEEEecCC
Q 035579 397 YKCSSLVSFPE------VALP-SKLEKIHIGACDALKSLPEAWMC---DT-NSSLEILYIEGCR 449 (814)
Q Consensus 397 ~~~~~l~~~~~------~~~~-~~L~~L~l~~~~~l~~~~~~~~~---~~-l~~L~~L~l~~~~ 449 (814)
++|. ++..+. +... ++|++|++++|. +...+...+. .. ..+|++|++++|.
T Consensus 88 s~n~-l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~-l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~ 149 (362)
T 3goz_A 88 SGNF-LSYKSSDELVKTLAAIPFTITVLDLGWND-FSSKSSSEFKQAFSNLPASITSLNLRGND 149 (362)
T ss_dssp CSSC-GGGSCHHHHHHHHHTSCTTCCEEECCSSC-GGGSCHHHHHHHHTTSCTTCCEEECTTSC
T ss_pred cCCc-CChHHHHHHHHHHHhCCCCccEEECcCCc-CCcHHHHHHHHHHHhCCCceeEEEccCCc
Confidence 8864 433321 2223 678888888887 4444432211 22 3577888887754
No 98
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.49 E-value=2.6e-15 Score=161.76 Aligned_cols=226 Identities=13% Similarity=0.093 Sum_probs=162.7
Q ss_pred cccccEEEEeccCCcchh----hHhhcCCCCcceEeecccCC---cccccccC-------CCCCCccEEEecCCCCce--
Q 035579 517 PATLESLSVYKCSKLESI----AERLDNNTSLETIGINFCEN---LKILPSGL-------HNLRQLREITIQRCGNLV-- 580 (814)
Q Consensus 517 ~~~L~~L~l~~~~~~~~~----~~~~~~l~~L~~L~L~~n~~---~~~~~~~~-------~~l~~L~~L~l~~~~~l~-- 580 (814)
.++|+.|++++|...... +..+..+++|++|++++|.+ .+.+|..+ ..+++|++|++++|..-.
T Consensus 31 ~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~ 110 (386)
T 2ca6_A 31 DDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTA 110 (386)
T ss_dssp CSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSCCCCTTT
T ss_pred CCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECCCCcCCHHH
Confidence 356888999888766553 44577899999999999744 34455544 789999999999985433
Q ss_pred --ecCCCCCCCCCcceEeeccccccc----cccccccCC---------CCcceEEecC-ccC--cccc----CCCCCcee
Q 035579 581 --SFPEGGLPCAKLSELRIFQCERLE----ALPKGLHNL---------TSLQELTIGG-ALP--SLEE----DGLPTNLH 638 (814)
Q Consensus 581 --~~~~~~~~l~~L~~L~l~~~~~l~----~lp~~~~~l---------~~L~~L~l~~-~~~--~l~~----~~~~~~L~ 638 (814)
.+|..+..+++|++|++++|.... .++..+..+ ++|++|++++ .+. .++. ...+++|+
T Consensus 111 ~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~ 190 (386)
T 2ca6_A 111 QEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHRLLH 190 (386)
T ss_dssp HHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHHHHHCTTCC
T ss_pred HHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHHHHHHHHHhCCCcC
Confidence 255566778999999999995432 233334444 8999999998 553 2321 23467999
Q ss_pred EEEecCCcchhhhhhh-cccccCCCCcccEEEEecCCCCC-----ccCCccccccCCCCCCCCCcceEEeccCCCCcc--
Q 035579 639 SLDIRGNMEIWKSMIE-RGRGFHRFSSLRHLTIDGCDDDM-----VSFPPEDKRLGTALPLPASLTDLEIGRFPNLER-- 710 (814)
Q Consensus 639 ~L~l~~n~~~~~~~~~-~~~~l~~l~~L~~L~l~~~~~~l-----~~i~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~-- 710 (814)
+|++++|.+....... .+..+..+++|+.|++++| .+ ..+|... ..+++|++|++++ +.++.
T Consensus 191 ~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n--~l~~~g~~~l~~~l-------~~~~~L~~L~L~~-n~i~~~~ 260 (386)
T 2ca6_A 191 TVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDN--TFTHLGSSALAIAL-------KSWPNLRELGLND-CLLSARG 260 (386)
T ss_dssp EEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSS--CCHHHHHHHHHHHG-------GGCTTCCEEECTT-CCCCHHH
T ss_pred EEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCC--CCCcHHHHHHHHHH-------ccCCCcCEEECCC-CCCchhh
Confidence 9999999876432110 0136788999999999997 45 4556544 4679999999999 55664
Q ss_pred ---ccccc--ccCCCCCeEEecCCCCCCc-----cCCCC--CcCCccEEeecCCc
Q 035579 711 ---LSSSI--VDLQNLTELCLRDCPKLKY-----FPEKG--LPSSLLRLSILSCP 753 (814)
Q Consensus 711 ---l~~~~--~~l~~L~~L~l~~c~~l~~-----lp~~~--l~~~L~~L~i~~c~ 753 (814)
++..+ +.+++|++|++++| .++. +|... .+++|++|++++|+
T Consensus 261 ~~~l~~~l~~~~~~~L~~L~L~~n-~i~~~g~~~l~~~l~~~l~~L~~L~l~~N~ 314 (386)
T 2ca6_A 261 AAAVVDAFSKLENIGLQTLRLQYN-EIELDAVRTLKTVIDEKMPDLLFLELNGNR 314 (386)
T ss_dssp HHHHHHHHHTCSSCCCCEEECCSS-CCBHHHHHHHHHHHHHHCTTCCEEECTTSB
T ss_pred HHHHHHHHhhccCCCeEEEECcCC-cCCHHHHHHHHHHHHhcCCCceEEEccCCc
Confidence 35555 34899999999996 6776 66532 16899999999986
No 99
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.48 E-value=2e-13 Score=152.00 Aligned_cols=180 Identities=19% Similarity=0.232 Sum_probs=106.1
Q ss_pred cccEEEEeccCCcchhhHhhcCCCCcceEeecccCCcccccccCCCCCCccEEEecCCCCceecCCCCCCCCCcceEeec
Q 035579 519 TLESLSVYKCSKLESIAERLDNNTSLETIGINFCENLKILPSGLHNLRQLREITIQRCGNLVSFPEGGLPCAKLSELRIF 598 (814)
Q Consensus 519 ~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~ 598 (814)
+++.|++++|...+ +|..+ .++|+.|++++|.+. .+| ..+++|++|++++| .+..+|. +.. +|++|+++
T Consensus 60 ~L~~L~Ls~n~L~~-lp~~l--~~~L~~L~Ls~N~l~-~ip---~~l~~L~~L~Ls~N-~l~~ip~-l~~--~L~~L~Ls 128 (571)
T 3cvr_A 60 QFSELQLNRLNLSS-LPDNL--PPQITVLEITQNALI-SLP---ELPASLEYLDACDN-RLSTLPE-LPA--SLKHLDVD 128 (571)
T ss_dssp TCSEEECCSSCCSC-CCSCC--CTTCSEEECCSSCCS-CCC---CCCTTCCEEECCSS-CCSCCCC-CCT--TCCEEECC
T ss_pred CccEEEeCCCCCCc-cCHhH--cCCCCEEECcCCCCc-ccc---cccCCCCEEEccCC-CCCCcch-hhc--CCCEEECC
Confidence 56777777765433 55433 256777777777666 344 34567777777776 4445665 443 67777777
Q ss_pred cccccccccccccCCCCcceEEecC-ccCccccCCCCCceeEEEecCCcchhhhhhhcccccCCCCcccEEEEecCCCCC
Q 035579 599 QCERLEALPKGLHNLTSLQELTIGG-ALPSLEEDGLPTNLHSLDIRGNMEIWKSMIERGRGFHRFSSLRHLTIDGCDDDM 677 (814)
Q Consensus 599 ~~~~l~~lp~~~~~l~~L~~L~l~~-~~~~l~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~l 677 (814)
+| .++.+|. .+++|+.|++++ .+..++. .+++|++|++++|.+... + . +. ++|+.|++++| .+
T Consensus 129 ~N-~l~~lp~---~l~~L~~L~Ls~N~l~~lp~--~l~~L~~L~Ls~N~L~~l-p----~-l~--~~L~~L~Ls~N--~L 192 (571)
T 3cvr_A 129 NN-QLTMLPE---LPALLEYINADNNQLTMLPE--LPTSLEVLSVRNNQLTFL-P----E-LP--ESLEALDVSTN--LL 192 (571)
T ss_dssp SS-CCSCCCC---CCTTCCEEECCSSCCSCCCC--CCTTCCEEECCSSCCSCC-C----C-CC--TTCCEEECCSS--CC
T ss_pred CC-cCCCCCC---cCccccEEeCCCCccCcCCC--cCCCcCEEECCCCCCCCc-c----h-hh--CCCCEEECcCC--CC
Confidence 76 4444665 466777777776 5555554 456777777777765442 1 2 33 66777777765 55
Q ss_pred ccCCccccccCCCCCCCCCcceEEeccCCCCcccccccccCCCCCeEEecCC
Q 035579 678 VSFPPEDKRLGTALPLPASLTDLEIGRFPNLERLSSSIVDLQNLTELCLRDC 729 (814)
Q Consensus 678 ~~i~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~l~~L~~L~l~~c 729 (814)
..+|. ... ......+.|+.|++++ |.++.+|..+..+++|+.|++++|
T Consensus 193 ~~lp~-~~~--~L~~~~~~L~~L~Ls~-N~l~~lp~~l~~l~~L~~L~L~~N 240 (571)
T 3cvr_A 193 ESLPA-VPV--RNHHSEETEIFFRCRE-NRITHIPENILSLDPTCTIILEDN 240 (571)
T ss_dssp SSCCC-CC----------CCEEEECCS-SCCCCCCGGGGGSCTTEEEECCSS
T ss_pred Cchhh-HHH--hhhcccccceEEecCC-CcceecCHHHhcCCCCCEEEeeCC
Confidence 56665 310 0001112227777776 566677766666777777777764
No 100
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.48 E-value=2.3e-13 Score=151.49 Aligned_cols=184 Identities=21% Similarity=0.247 Sum_probs=96.9
Q ss_pred CccEEeecCCCCcccccccCCCcccccEEEEeccCCcchhhHhhcCCCCcceEeecccCCcccccccCCCCCCccEEEec
Q 035579 495 ILEHLSIVGCPSLTCIFSKNELPATLESLSVYKCSKLESIAERLDNNTSLETIGINFCENLKILPSGLHNLRQLREITIQ 574 (814)
Q Consensus 495 ~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~ 574 (814)
+++.|+++++. ++. ++.. .+++|+.|++++|... .+| ..+++|+.|++++|.+.+ +|. +.. +|++|+++
T Consensus 60 ~L~~L~Ls~n~-L~~-lp~~-l~~~L~~L~Ls~N~l~-~ip---~~l~~L~~L~Ls~N~l~~-ip~-l~~--~L~~L~Ls 128 (571)
T 3cvr_A 60 QFSELQLNRLN-LSS-LPDN-LPPQITVLEITQNALI-SLP---ELPASLEYLDACDNRLST-LPE-LPA--SLKHLDVD 128 (571)
T ss_dssp TCSEEECCSSC-CSC-CCSC-CCTTCSEEECCSSCCS-CCC---CCCTTCCEEECCSSCCSC-CCC-CCT--TCCEEECC
T ss_pred CccEEEeCCCC-CCc-cCHh-HcCCCCEEECcCCCCc-ccc---cccCCCCEEEccCCCCCC-cch-hhc--CCCEEECC
Confidence 46666666653 222 2221 1345666666665443 444 345666666666666555 444 433 66666666
Q ss_pred CCCCceecCCCCCCCCCcceEeeccccccccccccccCCCCcceEEecC-ccCccccCCCCCceeEEEecCCcchhhhhh
Q 035579 575 RCGNLVSFPEGGLPCAKLSELRIFQCERLEALPKGLHNLTSLQELTIGG-ALPSLEEDGLPTNLHSLDIRGNMEIWKSMI 653 (814)
Q Consensus 575 ~~~~l~~~~~~~~~l~~L~~L~l~~~~~l~~lp~~~~~l~~L~~L~l~~-~~~~l~~~~~~~~L~~L~l~~n~~~~~~~~ 653 (814)
+| .+..+|. .+++|+.|++++| .++.+|. .+++|+.|++++ .+..+|. +.++|+.|++++|.+...+
T Consensus 129 ~N-~l~~lp~---~l~~L~~L~Ls~N-~l~~lp~---~l~~L~~L~Ls~N~L~~lp~--l~~~L~~L~Ls~N~L~~lp-- 196 (571)
T 3cvr_A 129 NN-QLTMLPE---LPALLEYINADNN-QLTMLPE---LPTSLEVLSVRNNQLTFLPE--LPESLEALDVSTNLLESLP-- 196 (571)
T ss_dssp SS-CCSCCCC---CCTTCCEEECCSS-CCSCCCC---CCTTCCEEECCSSCCSCCCC--CCTTCCEEECCSSCCSSCC--
T ss_pred CC-cCCCCCC---cCccccEEeCCCC-ccCcCCC---cCCCcCEEECCCCCCCCcch--hhCCCCEEECcCCCCCchh--
Confidence 65 3444554 3456666666666 3444554 455666666666 5555544 2266666666666554221
Q ss_pred hcccccCCCCcc-------cEEEEecCCCCCccCCccccccCCCCCCCCCcceEEeccCCCCcccccccc
Q 035579 654 ERGRGFHRFSSL-------RHLTIDGCDDDMVSFPPEDKRLGTALPLPASLTDLEIGRFPNLERLSSSIV 716 (814)
Q Consensus 654 ~~~~~l~~l~~L-------~~L~l~~~~~~l~~i~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~ 716 (814)
. +.. +| +.|++++| .+..+|...+ .+++|+.|++++|+--..+|..+.
T Consensus 197 ---~-~~~--~L~~~~~~L~~L~Ls~N--~l~~lp~~l~-------~l~~L~~L~L~~N~l~~~~p~~l~ 251 (571)
T 3cvr_A 197 ---A-VPV--RNHHSEETEIFFRCREN--RITHIPENIL-------SLDPTCTIILEDNPLSSRIRESLS 251 (571)
T ss_dssp ---C-CC----------CCEEEECCSS--CCCCCCGGGG-------GSCTTEEEECCSSSCCHHHHHHHH
T ss_pred ---h-HHH--hhhcccccceEEecCCC--cceecCHHHh-------cCCCCCEEEeeCCcCCCcCHHHHH
Confidence 1 221 44 66666665 5556666552 356666666666322233444443
No 101
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.45 E-value=1.7e-13 Score=154.50 Aligned_cols=142 Identities=16% Similarity=0.204 Sum_probs=77.0
Q ss_pred ccccEEEEeccCCcchhhHhhcCCCCcceEeecccCCcccccccCCCCCCccEEEecCCCCceecCCCCCCCCCcceEee
Q 035579 518 ATLESLSVYKCSKLESIAERLDNNTSLETIGINFCENLKILPSGLHNLRQLREITIQRCGNLVSFPEGGLPCAKLSELRI 597 (814)
Q Consensus 518 ~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l 597 (814)
++|+.|++++|... .++ .+..+++|+.|+|++|.+.+..+ +..+++|+.|++++| .+..+| .+..+++|+.|++
T Consensus 43 ~~L~~L~l~~n~i~-~l~-~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N-~l~~l~-~l~~l~~L~~L~L 116 (605)
T 1m9s_A 43 NSIDQIIANNSDIK-SVQ-GIQYLPNVTKLFLNGNKLTDIKP--LTNLKNLGWLFLDEN-KIKDLS-SLKDLKKLKSLSL 116 (605)
T ss_dssp TTCCCCBCTTCCCC-CCT-TGGGCTTCCEEECTTSCCCCCGG--GGGCTTCCEEECCSS-CCCCCT-TSTTCTTCCEEEC
T ss_pred CCCCEEECcCCCCC-CCh-HHccCCCCCEEEeeCCCCCCChh--hccCCCCCEEECcCC-CCCCCh-hhccCCCCCEEEe
Confidence 45666666665433 233 36666666677776666655443 566666666666666 444444 4555666666666
Q ss_pred ccccccccccccccCCCCcceEEecC-ccCccccCCCCCceeEEEecCCcchhhhhhhcccccCCCCcccEEEEecC
Q 035579 598 FQCERLEALPKGLHNLTSLQELTIGG-ALPSLEEDGLPTNLHSLDIRGNMEIWKSMIERGRGFHRFSSLRHLTIDGC 673 (814)
Q Consensus 598 ~~~~~l~~lp~~~~~l~~L~~L~l~~-~~~~l~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~l~~L~~L~l~~~ 673 (814)
++| .+..++ .+..+++|+.|++++ .+..++....+++|+.|+|++|.+.... .+..+++|+.|+|++|
T Consensus 117 s~N-~l~~l~-~l~~l~~L~~L~Ls~N~l~~l~~l~~l~~L~~L~Ls~N~l~~~~------~l~~l~~L~~L~Ls~N 185 (605)
T 1m9s_A 117 EHN-GISDIN-GLVHLPQLESLYLGNNKITDITVLSRLTKLDTLSLEDNQISDIV------PLAGLTKLQNLYLSKN 185 (605)
T ss_dssp TTS-CCCCCG-GGGGCTTCSEEECCSSCCCCCGGGGSCTTCSEEECCSSCCCCCG------GGTTCTTCCEEECCSS
T ss_pred cCC-CCCCCc-cccCCCccCEEECCCCccCCchhhcccCCCCEEECcCCcCCCch------hhccCCCCCEEECcCC
Confidence 666 333443 355555566665555 4444433444455555555555443321 1344455555555554
No 102
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.42 E-value=1.6e-13 Score=154.78 Aligned_cols=191 Identities=17% Similarity=0.187 Sum_probs=151.5
Q ss_pred ccEEEEeccCCcchhhHhhcCCCCcceEeecccCCcccccccCCCCCCccEEEecCCCCceecCCCCCCCCCcceEeecc
Q 035579 520 LESLSVYKCSKLESIAERLDNNTSLETIGINFCENLKILPSGLHNLRQLREITIQRCGNLVSFPEGGLPCAKLSELRIFQ 599 (814)
Q Consensus 520 L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~ 599 (814)
+..+.+..+......+ +..+++|+.|++++|.+... ..+..+++|+.|+|++| .+..++. +..+++|+.|++++
T Consensus 23 l~~l~l~~~~i~~~~~--~~~L~~L~~L~l~~n~i~~l--~~l~~l~~L~~L~Ls~N-~l~~~~~-l~~l~~L~~L~Ls~ 96 (605)
T 1m9s_A 23 TIKDNLKKKSVTDAVT--QNELNSIDQIIANNSDIKSV--QGIQYLPNVTKLFLNGN-KLTDIKP-LTNLKNLGWLFLDE 96 (605)
T ss_dssp HHHHHTTCSCTTSEEC--HHHHTTCCCCBCTTCCCCCC--TTGGGCTTCCEEECTTS-CCCCCGG-GGGCTTCCEEECCS
T ss_pred HHHHhccCCCcccccc--hhcCCCCCEEECcCCCCCCC--hHHccCCCCCEEEeeCC-CCCCChh-hccCCCCCEEECcC
Confidence 4444444443333333 56788999999999987654 35888999999999998 5566665 78899999999999
Q ss_pred ccccccccccccCCCCcceEEecC-ccCccccCCCCCceeEEEecCCcchhhhhhhcccccCCCCcccEEEEecCCCCCc
Q 035579 600 CERLEALPKGLHNLTSLQELTIGG-ALPSLEEDGLPTNLHSLDIRGNMEIWKSMIERGRGFHRFSSLRHLTIDGCDDDMV 678 (814)
Q Consensus 600 ~~~l~~lp~~~~~l~~L~~L~l~~-~~~~l~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~l~ 678 (814)
| .+..+| .+..+++|+.|++++ .+..++....+++|+.|+|++|.+... ..+..+++|+.|+|++| .+.
T Consensus 97 N-~l~~l~-~l~~l~~L~~L~Ls~N~l~~l~~l~~l~~L~~L~Ls~N~l~~l------~~l~~l~~L~~L~Ls~N--~l~ 166 (605)
T 1m9s_A 97 N-KIKDLS-SLKDLKKLKSLSLEHNGISDINGLVHLPQLESLYLGNNKITDI------TVLSRLTKLDTLSLEDN--QIS 166 (605)
T ss_dssp S-CCCCCT-TSTTCTTCCEEECTTSCCCCCGGGGGCTTCSEEECCSSCCCCC------GGGGSCTTCSEEECCSS--CCC
T ss_pred C-CCCCCh-hhccCCCCCEEEecCCCCCCCccccCCCccCEEECCCCccCCc------hhhcccCCCCEEECcCC--cCC
Confidence 9 566665 688999999999999 777777777789999999999987664 35788999999999997 666
Q ss_pred cCCccccccCCCCCCCCCcceEEeccCCCCcccccccccCCCCCeEEecCCCCCCccCC
Q 035579 679 SFPPEDKRLGTALPLPASLTDLEIGRFPNLERLSSSIVDLQNLTELCLRDCPKLKYFPE 737 (814)
Q Consensus 679 ~i~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~l~~L~~L~l~~c~~l~~lp~ 737 (814)
.++. . ..+++|+.|+|++ +.++.++ .+..+++|+.|++++| .+...|.
T Consensus 167 ~~~~-l-------~~l~~L~~L~Ls~-N~i~~l~-~l~~l~~L~~L~L~~N-~l~~~p~ 214 (605)
T 1m9s_A 167 DIVP-L-------AGLTKLQNLYLSK-NHISDLR-ALAGLKNLDVLELFSQ-ECLNKPI 214 (605)
T ss_dssp CCGG-G-------TTCTTCCEEECCS-SCCCBCG-GGTTCTTCSEEECCSE-EEECCCC
T ss_pred Cchh-h-------ccCCCCCEEECcC-CCCCCCh-HHccCCCCCEEEccCC-cCcCCcc
Confidence 6655 3 4689999999999 6888886 6889999999999996 4655554
No 103
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.41 E-value=1.8e-13 Score=138.16 Aligned_cols=150 Identities=19% Similarity=0.206 Sum_probs=77.0
Q ss_pred CCCCCccEEEecCCCCceecCCCCCCCCCcceEeeccccccccccccccCCCCcceEEecC-ccCccccCCCCCceeEEE
Q 035579 563 HNLRQLREITIQRCGNLVSFPEGGLPCAKLSELRIFQCERLEALPKGLHNLTSLQELTIGG-ALPSLEEDGLPTNLHSLD 641 (814)
Q Consensus 563 ~~l~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~~~~l~~lp~~~~~l~~L~~L~l~~-~~~~l~~~~~~~~L~~L~ 641 (814)
..+++|++|++++| .+..++ .+..+++|++|++++| .+..++. +..+++|+.|++++ .+..++.... ++|++|+
T Consensus 38 ~~l~~L~~L~l~~n-~i~~l~-~l~~l~~L~~L~L~~N-~i~~~~~-l~~l~~L~~L~L~~N~l~~l~~~~~-~~L~~L~ 112 (263)
T 1xeu_A 38 KELSGVQNFNGDNS-NIQSLA-GMQFFTNLKELHLSHN-QISDLSP-LKDLTKLEELSVNRNRLKNLNGIPS-ACLSRLF 112 (263)
T ss_dssp HHHTTCSEEECTTS-CCCCCT-TGGGCTTCCEEECCSS-CCCCCGG-GTTCSSCCEEECCSSCCSCCTTCCC-SSCCEEE
T ss_pred hhcCcCcEEECcCC-Ccccch-HHhhCCCCCEEECCCC-ccCCChh-hccCCCCCEEECCCCccCCcCcccc-CcccEEE
Confidence 34444445555444 333343 3444445555555544 3333333 44455555555554 4444433333 5666666
Q ss_pred ecCCcchhhhhhhcccccCCCCcccEEEEecCCCCCccCCccccccCCCCCCCCCcceEEeccCCCCcccccccccCCCC
Q 035579 642 IRGNMEIWKSMIERGRGFHRFSSLRHLTIDGCDDDMVSFPPEDKRLGTALPLPASLTDLEIGRFPNLERLSSSIVDLQNL 721 (814)
Q Consensus 642 l~~n~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~l~~i~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~l~~L 721 (814)
+++|.+... ..+..+++|+.|++++| .+..++. . ..+++|+.|++++ |.++.+ ..+..+++|
T Consensus 113 L~~N~l~~~------~~l~~l~~L~~L~Ls~N--~i~~~~~-l-------~~l~~L~~L~L~~-N~i~~~-~~l~~l~~L 174 (263)
T 1xeu_A 113 LDNNELRDT------DSLIHLKNLEILSIRNN--KLKSIVM-L-------GFLSKLEVLDLHG-NEITNT-GGLTRLKKV 174 (263)
T ss_dssp CCSSCCSBS------GGGTTCTTCCEEECTTS--CCCBCGG-G-------GGCTTCCEEECTT-SCCCBC-TTSTTCCCC
T ss_pred ccCCccCCC------hhhcCcccccEEECCCC--cCCCChH-H-------ccCCCCCEEECCC-CcCcch-HHhccCCCC
Confidence 666655442 23556666666666665 4554442 1 2456666666666 556555 355666666
Q ss_pred CeEEecCCCCCCccC
Q 035579 722 TELCLRDCPKLKYFP 736 (814)
Q Consensus 722 ~~L~l~~c~~l~~lp 736 (814)
+.|+++++ .+...|
T Consensus 175 ~~L~l~~N-~~~~~~ 188 (263)
T 1xeu_A 175 NWIDLTGQ-KCVNEP 188 (263)
T ss_dssp CEEEEEEE-EEECCC
T ss_pred CEEeCCCC-cccCCc
Confidence 66666663 344333
No 104
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.40 E-value=1.1e-12 Score=126.12 Aligned_cols=125 Identities=11% Similarity=0.117 Sum_probs=70.9
Q ss_pred ccccEEEEeccCCcchhhHhhcCCCCcceEeecccCCcccccccCCCCCCccEEEecCCCCceecCCCCCCCCCcceEee
Q 035579 518 ATLESLSVYKCSKLESIAERLDNNTSLETIGINFCENLKILPSGLHNLRQLREITIQRCGNLVSFPEGGLPCAKLSELRI 597 (814)
Q Consensus 518 ~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l 597 (814)
++|+.|++++|... .++ .+..+++|++|++++|.+.. +..+..+++|++|++++|......+..+..+++|++|++
T Consensus 44 ~~L~~L~l~~n~i~-~l~-~l~~l~~L~~L~l~~n~~~~--~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L 119 (197)
T 4ezg_A 44 NSLTYITLANINVT-DLT-GIEYAHNIKDLTINNIHATN--YNPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDI 119 (197)
T ss_dssp HTCCEEEEESSCCS-CCT-TGGGCTTCSEEEEESCCCSC--CGGGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCEEEC
T ss_pred CCccEEeccCCCcc-ChH-HHhcCCCCCEEEccCCCCCc--chhhhcCCCCCEEEeECCccCcccChhhcCCCCCCEEEe
Confidence 35666777665443 444 46667777777777774332 235666777777777776443335556666777777777
Q ss_pred ccccccccccccccCCCCcceEEecC-c-cCccccCCCCCceeEEEecCCc
Q 035579 598 FQCERLEALPKGLHNLTSLQELTIGG-A-LPSLEEDGLPTNLHSLDIRGNM 646 (814)
Q Consensus 598 ~~~~~l~~lp~~~~~l~~L~~L~l~~-~-~~~l~~~~~~~~L~~L~l~~n~ 646 (814)
++|......|..+..+++|++|++++ . +..++....+++|++|++++|.
T Consensus 120 s~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~~~~~l~~l~~L~~L~l~~n~ 170 (197)
T 4ezg_A 120 SHSAHDDSILTKINTLPKVNSIDLSYNGAITDIMPLKTLPELKSLNIQFDG 170 (197)
T ss_dssp CSSBCBGGGHHHHTTCSSCCEEECCSCTBCCCCGGGGGCSSCCEEECTTBC
T ss_pred cCCccCcHhHHHHhhCCCCCEEEccCCCCccccHhhcCCCCCCEEECCCCC
Confidence 77744444555555655555555555 2 4443333333444444444443
No 105
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.38 E-value=1e-12 Score=126.39 Aligned_cols=148 Identities=13% Similarity=0.059 Sum_probs=98.0
Q ss_pred CccEEeecCCCCcccccccCCCcccccEEEEeccCCcchhhHhhcCCCCcceEeecccCCcccccccCCCCCCccEEEec
Q 035579 495 ILEHLSIVGCPSLTCIFSKNELPATLESLSVYKCSKLESIAERLDNNTSLETIGINFCENLKILPSGLHNLRQLREITIQ 574 (814)
Q Consensus 495 ~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~ 574 (814)
+|++|+++++... . ++....+++|++|++++|. ...++ .+..+++|++|++++|.+.+..+..+..+++|++|+++
T Consensus 45 ~L~~L~l~~n~i~-~-l~~l~~l~~L~~L~l~~n~-~~~~~-~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls 120 (197)
T 4ezg_A 45 SLTYITLANINVT-D-LTGIEYAHNIKDLTINNIH-ATNYN-PISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDIS 120 (197)
T ss_dssp TCCEEEEESSCCS-C-CTTGGGCTTCSEEEEESCC-CSCCG-GGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCEEECC
T ss_pred CccEEeccCCCcc-C-hHHHhcCCCCCEEEccCCC-CCcch-hhhcCCCCCEEEeECCccCcccChhhcCCCCCCEEEec
Confidence 3455555443222 2 2223344567777777773 33333 57778888888888888877677778888888888888
Q ss_pred CCCCceecCCCCCCCCCcceEeeccccccccccccccCCCCcceEEecC-ccCccccCCCCCceeEEEecCCcc
Q 035579 575 RCGNLVSFPEGGLPCAKLSELRIFQCERLEALPKGLHNLTSLQELTIGG-ALPSLEEDGLPTNLHSLDIRGNME 647 (814)
Q Consensus 575 ~~~~l~~~~~~~~~l~~L~~L~l~~~~~l~~lp~~~~~l~~L~~L~l~~-~~~~l~~~~~~~~L~~L~l~~n~~ 647 (814)
+|......+..+..+++|++|++++|..++.+| .+..+++|+.|++++ .+..++....+++|+.|++++|++
T Consensus 121 ~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~~~~-~l~~l~~L~~L~l~~n~i~~~~~l~~l~~L~~L~l~~N~i 193 (197)
T 4ezg_A 121 HSAHDDSILTKINTLPKVNSIDLSYNGAITDIM-PLKTLPELKSLNIQFDGVHDYRGIEDFPKLNQLYAFSQTI 193 (197)
T ss_dssp SSBCBGGGHHHHTTCSSCCEEECCSCTBCCCCG-GGGGCSSCCEEECTTBCCCCCTTGGGCSSCCEEEECBC--
T ss_pred CCccCcHhHHHHhhCCCCCEEEccCCCCccccH-hhcCCCCCCEEECCCCCCcChHHhccCCCCCEEEeeCccc
Confidence 875444455566777888888888886577776 577888888888887 666655444456677777777653
No 106
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.37 E-value=7.1e-12 Score=123.60 Aligned_cols=147 Identities=22% Similarity=0.269 Sum_probs=89.1
Q ss_pred ccEEEecCCCCceecCCCCCCCCCcceEeeccccccccccccccCCCCcceEEecC-ccCccccCCCCCceeEEEecCCc
Q 035579 568 LREITIQRCGNLVSFPEGGLPCAKLSELRIFQCERLEALPKGLHNLTSLQELTIGG-ALPSLEEDGLPTNLHSLDIRGNM 646 (814)
Q Consensus 568 L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~~~~l~~lp~~~~~l~~L~~L~l~~-~~~~l~~~~~~~~L~~L~l~~n~ 646 (814)
-+.++.+++ .++.+|..+. ++|++|++++|......|..+..+++|++|++++ .+..++.
T Consensus 21 ~~~v~c~~~-~l~~ip~~~~--~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~---------------- 81 (229)
T 3e6j_A 21 GTTVDCRSK-RHASVPAGIP--TNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPV---------------- 81 (229)
T ss_dssp TTEEECTTS-CCSSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCT----------------
T ss_pred CCEeEccCC-CcCccCCCCC--CCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcCh----------------
Confidence 455666654 5666665444 4777777777744443355555555555555544 3333321
Q ss_pred chhhhhhhcccccCCCCcccEEEEecCCCCCccCCccccccCCCCCCCCCcceEEeccCCCCcccccccccCCCCCeEEe
Q 035579 647 EIWKSMIERGRGFHRFSSLRHLTIDGCDDDMVSFPPEDKRLGTALPLPASLTDLEIGRFPNLERLSSSIVDLQNLTELCL 726 (814)
Q Consensus 647 ~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~l~~i~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~l~~L~~L~l 726 (814)
..|..+++|+.|++++| .+..++...+ ..+++|++|++++ |.++.+|..+..+++|++|++
T Consensus 82 ----------~~~~~l~~L~~L~Ls~N--~l~~l~~~~~------~~l~~L~~L~Ls~-N~l~~lp~~~~~l~~L~~L~L 142 (229)
T 3e6j_A 82 ----------GVFDSLTQLTVLDLGTN--QLTVLPSAVF------DRLVHLKELFMCC-NKLTELPRGIERLTHLTHLAL 142 (229)
T ss_dssp ----------TTTTTCTTCCEEECCSS--CCCCCCTTTT------TTCTTCCEEECCS-SCCCSCCTTGGGCTTCSEEEC
T ss_pred ----------hhcccCCCcCEEECCCC--cCCccChhHh------CcchhhCeEeccC-CcccccCcccccCCCCCEEEC
Confidence 33455666666666665 5555555432 3566777777777 567777776777777777777
Q ss_pred cCCCCCCccCCCCC--cCCccEEeecCCc
Q 035579 727 RDCPKLKYFPEKGL--PSSLLRLSILSCP 753 (814)
Q Consensus 727 ~~c~~l~~lp~~~l--~~~L~~L~i~~c~ 753 (814)
++ ++++.++...+ +++|+.|++.++|
T Consensus 143 ~~-N~l~~~~~~~~~~l~~L~~L~l~~N~ 170 (229)
T 3e6j_A 143 DQ-NQLKSIPHGAFDRLSSLTHAYLFGNP 170 (229)
T ss_dssp CS-SCCCCCCTTTTTTCTTCCEEECTTSC
T ss_pred CC-CcCCccCHHHHhCCCCCCEEEeeCCC
Confidence 77 46777765444 5677777777765
No 107
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.35 E-value=3.7e-12 Score=123.85 Aligned_cols=125 Identities=21% Similarity=0.212 Sum_probs=56.6
Q ss_pred CcceEeecccCCcccccccCCCCCCccEEEecCCCCceecCC-CCCCCCCcceEeeccccccccccc-cccCCCCcceEE
Q 035579 543 SLETIGINFCENLKILPSGLHNLRQLREITIQRCGNLVSFPE-GGLPCAKLSELRIFQCERLEALPK-GLHNLTSLQELT 620 (814)
Q Consensus 543 ~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~-~~~~l~~L~~L~l~~~~~l~~lp~-~~~~l~~L~~L~ 620 (814)
+|++|++++|.+.+..+..+..+++|++|++++| .++.++. .+..+++|++|++++| .++.+|. .+..+++|++|+
T Consensus 29 ~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~Ls~n-~l~~~~~~~~~~l~~L~~L~ 106 (208)
T 2o6s_A 29 QTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGN-KLQSLPNGVFNKLTSLTYLNLSTN-QLQSLPNGVFDKLTQLKELA 106 (208)
T ss_dssp TCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSS-CCCCCCTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEE
T ss_pred CCcEEEcCCCccCcCChhhhcccccCcEEECCCC-ccCccChhhcCCCCCcCEEECCCC-cCCccCHhHhcCccCCCEEE
Confidence 4455555555444443344445555555555554 3333333 2344455555555555 2223322 234444444444
Q ss_pred ecC-ccCcccc--CCCCCceeEEEecCCcchhhhhhhcccccCCCCcccEEEEecC
Q 035579 621 IGG-ALPSLEE--DGLPTNLHSLDIRGNMEIWKSMIERGRGFHRFSSLRHLTIDGC 673 (814)
Q Consensus 621 l~~-~~~~l~~--~~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~l~~L~~L~l~~~ 673 (814)
+++ .+..++. ...+++|++|++++|.+..... ..+..+++|++|++++|
T Consensus 107 L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~----~~~~~l~~L~~L~l~~N 158 (208)
T 2o6s_A 107 LNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPD----GVFDRLTSLQYIWLHDN 158 (208)
T ss_dssp CCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCT----TTTTTCTTCCEEECCSC
T ss_pred cCCCcCcccCHhHhccCCcCCEEECCCCccceeCH----HHhccCCCccEEEecCC
Confidence 444 3333322 1223455555555554433221 33555566666666654
No 108
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.34 E-value=5.9e-12 Score=131.97 Aligned_cols=99 Identities=14% Similarity=0.068 Sum_probs=52.2
Q ss_pred CCceeEEEecCCcchhhhhhhcccccCCCCcccEEEEecCCCCCccCCccccccCCCCCCCCCcc-eEEeccCCCCcccc
Q 035579 634 PTNLHSLDIRGNMEIWKSMIERGRGFHRFSSLRHLTIDGCDDDMVSFPPEDKRLGTALPLPASLT-DLEIGRFPNLERLS 712 (814)
Q Consensus 634 ~~~L~~L~l~~n~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~l~~i~~~~~~~~~~~~~~~~L~-~L~l~~~~~l~~l~ 712 (814)
+++|+++++++|....... .+|.++++|+++++.++ +..|+...+ ..+++|+ .+++.+ .++.|+
T Consensus 225 ~~~L~~l~L~~n~i~~I~~----~aF~~~~~L~~l~l~~n---i~~I~~~aF------~~~~~L~~~l~l~~--~l~~I~ 289 (329)
T 3sb4_A 225 MPNLVSLDISKTNATTIPD----FTFAQKKYLLKIKLPHN---LKTIGQRVF------SNCGRLAGTLELPA--SVTAIE 289 (329)
T ss_dssp CTTCCEEECTTBCCCEECT----TTTTTCTTCCEEECCTT---CCEECTTTT------TTCTTCCEEEEECT--TCCEEC
T ss_pred cCCCeEEECCCCCcceecH----hhhhCCCCCCEEECCcc---cceehHHHh------hCChhccEEEEEcc--cceEEc
Confidence 3556666666554443322 45555666666666552 455555442 4455565 666655 455555
Q ss_pred c-ccccCCCCCeEEecCCCCCCccCCCCC--cCCccEEe
Q 035579 713 S-SIVDLQNLTELCLRDCPKLKYFPEKGL--PSSLLRLS 748 (814)
Q Consensus 713 ~-~~~~l~~L~~L~l~~c~~l~~lp~~~l--~~~L~~L~ 748 (814)
. .+.++++|+.+++++ ++++.++...+ +++|++++
T Consensus 290 ~~aF~~c~~L~~l~l~~-n~i~~I~~~aF~~~~~L~~ly 327 (329)
T 3sb4_A 290 FGAFMGCDNLRYVLATG-DKITTLGDELFGNGVPSKLIY 327 (329)
T ss_dssp TTTTTTCTTEEEEEECS-SCCCEECTTTTCTTCCCCEEE
T ss_pred hhhhhCCccCCEEEeCC-CccCccchhhhcCCcchhhhc
Confidence 4 555566666666554 35555555444 44444443
No 109
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.33 E-value=1.3e-12 Score=131.74 Aligned_cols=166 Identities=14% Similarity=0.101 Sum_probs=136.1
Q ss_pred CCCCccEEEecCCCCceecCCCCCCCCCcceEeeccccccccccccccCCCCcceEEecC-ccCccccCCCCCceeEEEe
Q 035579 564 NLRQLREITIQRCGNLVSFPEGGLPCAKLSELRIFQCERLEALPKGLHNLTSLQELTIGG-ALPSLEEDGLPTNLHSLDI 642 (814)
Q Consensus 564 ~l~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~~~~l~~lp~~~~~l~~L~~L~l~~-~~~~l~~~~~~~~L~~L~l 642 (814)
.+.++..++++++ .++.++ .+..+++|++|++++| .++.+| .+..+++|+.|++++ .+..++....+++|++|++
T Consensus 17 ~l~~l~~l~l~~~-~i~~~~-~~~~l~~L~~L~l~~n-~i~~l~-~l~~l~~L~~L~L~~N~i~~~~~l~~l~~L~~L~L 92 (263)
T 1xeu_A 17 GLANAVKQNLGKQ-SVTDLV-SQKELSGVQNFNGDNS-NIQSLA-GMQFFTNLKELHLSHNQISDLSPLKDLTKLEELSV 92 (263)
T ss_dssp HHHHHHHHHHTCS-CTTSEE-CHHHHTTCSEEECTTS-CCCCCT-TGGGCTTCCEEECCSSCCCCCGGGTTCSSCCEEEC
T ss_pred HHHHHHHHHhcCC-Cccccc-chhhcCcCcEEECcCC-Ccccch-HHhhCCCCCEEECCCCccCCChhhccCCCCCEEEC
Confidence 3566777778876 555555 5667889999999999 677787 788999999999999 7887777777899999999
Q ss_pred cCCcchhhhhhhcccccCCCCcccEEEEecCCCCCccCCccccccCCCCCCCCCcceEEeccCCCCcccccccccCCCCC
Q 035579 643 RGNMEIWKSMIERGRGFHRFSSLRHLTIDGCDDDMVSFPPEDKRLGTALPLPASLTDLEIGRFPNLERLSSSIVDLQNLT 722 (814)
Q Consensus 643 ~~n~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~l~~i~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~l~~L~ 722 (814)
++|.+..... +.. ++|++|++++| .+..++. . ..+++|+.|++++ |.++.++ .+..+++|+
T Consensus 93 ~~N~l~~l~~------~~~-~~L~~L~L~~N--~l~~~~~-l-------~~l~~L~~L~Ls~-N~i~~~~-~l~~l~~L~ 153 (263)
T 1xeu_A 93 NRNRLKNLNG------IPS-ACLSRLFLDNN--ELRDTDS-L-------IHLKNLEILSIRN-NKLKSIV-MLGFLSKLE 153 (263)
T ss_dssp CSSCCSCCTT------CCC-SSCCEEECCSS--CCSBSGG-G-------TTCTTCCEEECTT-SCCCBCG-GGGGCTTCC
T ss_pred CCCccCCcCc------ccc-CcccEEEccCC--ccCCChh-h-------cCcccccEEECCC-CcCCCCh-HHccCCCCC
Confidence 9998776432 333 99999999998 7777653 2 4789999999999 7899997 788999999
Q ss_pred eEEecCCCCCCccCCCCCcCCccEEeecCCc
Q 035579 723 ELCLRDCPKLKYFPEKGLPSSLLRLSILSCP 753 (814)
Q Consensus 723 ~L~l~~c~~l~~lp~~~l~~~L~~L~i~~c~ 753 (814)
.|++++| .++.++.-.-+++|+.|++++|+
T Consensus 154 ~L~L~~N-~i~~~~~l~~l~~L~~L~l~~N~ 183 (263)
T 1xeu_A 154 VLDLHGN-EITNTGGLTRLKKVNWIDLTGQK 183 (263)
T ss_dssp EEECTTS-CCCBCTTSTTCCCCCEEEEEEEE
T ss_pred EEECCCC-cCcchHHhccCCCCCEEeCCCCc
Confidence 9999995 78888543347899999999986
No 110
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.32 E-value=1.4e-11 Score=120.65 Aligned_cols=146 Identities=20% Similarity=0.268 Sum_probs=96.5
Q ss_pred cEEEecCCCCceecCCCCCCCCCcceEeeccccccccccc-cccCCCCcceEEecCccCccccCCCCCceeEEEecCCcc
Q 035579 569 REITIQRCGNLVSFPEGGLPCAKLSELRIFQCERLEALPK-GLHNLTSLQELTIGGALPSLEEDGLPTNLHSLDIRGNME 647 (814)
Q Consensus 569 ~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~~~~l~~lp~-~~~~l~~L~~L~l~~~~~~l~~~~~~~~L~~L~l~~n~~ 647 (814)
+.++.+++ .++.+|..+. ++++.|++++| .++.++. .+..+++|+. |++++|.+
T Consensus 14 ~~v~c~~~-~l~~iP~~l~--~~l~~L~l~~n-~i~~i~~~~~~~l~~L~~---------------------L~Ls~N~i 68 (220)
T 2v9t_B 14 NIVDCRGK-GLTEIPTNLP--ETITEIRLEQN-TIKVIPPGAFSPYKKLRR---------------------IDLSNNQI 68 (220)
T ss_dssp TEEECTTS-CCSSCCSSCC--TTCCEEECCSS-CCCEECTTSSTTCTTCCE---------------------EECCSSCC
T ss_pred CEEEcCCC-CcCcCCCccC--cCCCEEECCCC-cCCCcCHhHhhCCCCCCE---------------------EECCCCcC
Confidence 56777775 6677776554 47888888887 4444433 4555555554 55555544
Q ss_pred hhhhhhhcccccCCCCcccEEEEecCCCCCccCCccccccCCCCCCCCCcceEEeccCCCCccccc-ccccCCCCCeEEe
Q 035579 648 IWKSMIERGRGFHRFSSLRHLTIDGCDDDMVSFPPEDKRLGTALPLPASLTDLEIGRFPNLERLSS-SIVDLQNLTELCL 726 (814)
Q Consensus 648 ~~~~~~~~~~~l~~l~~L~~L~l~~~~~~l~~i~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~-~~~~l~~L~~L~l 726 (814)
....+ ..|..+++|++|++++| .+..+|...+ ..+++|++|++++ |.++.++. .+..+++|++|++
T Consensus 69 ~~~~~----~~~~~l~~L~~L~Ls~N--~l~~l~~~~f------~~l~~L~~L~L~~-N~l~~~~~~~~~~l~~L~~L~L 135 (220)
T 2v9t_B 69 SELAP----DAFQGLRSLNSLVLYGN--KITELPKSLF------EGLFSLQLLLLNA-NKINCLRVDAFQDLHNLNLLSL 135 (220)
T ss_dssp CEECT----TTTTTCSSCCEEECCSS--CCCCCCTTTT------TTCTTCCEEECCS-SCCCCCCTTTTTTCTTCCEEEC
T ss_pred CCcCH----HHhhCCcCCCEEECCCC--cCCccCHhHc------cCCCCCCEEECCC-CCCCEeCHHHcCCCCCCCEEEC
Confidence 43322 45677777777777776 6667776542 4567788888887 66777654 6777788888888
Q ss_pred cCCCCCCccCCCCC--cCCccEEeecCCc
Q 035579 727 RDCPKLKYFPEKGL--PSSLLRLSILSCP 753 (814)
Q Consensus 727 ~~c~~l~~lp~~~l--~~~L~~L~i~~c~ 753 (814)
++ ++++.++...+ +++|++|+++++|
T Consensus 136 ~~-N~l~~~~~~~~~~l~~L~~L~L~~N~ 163 (220)
T 2v9t_B 136 YD-NKLQTIAKGTFSPLRAIQTMHLAQNP 163 (220)
T ss_dssp CS-SCCSCCCTTTTTTCTTCCEEECCSSC
T ss_pred CC-CcCCEECHHHHhCCCCCCEEEeCCCC
Confidence 87 46777776544 6778888888765
No 111
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.31 E-value=6e-12 Score=122.32 Aligned_cols=154 Identities=19% Similarity=0.116 Sum_probs=115.7
Q ss_pred cccccEEEEeccCCcchhhHhhcCCCCcceEeecccCCcccccccCCCCCCccEEEecCCCCceecCC-CCCCCCCcceE
Q 035579 517 PATLESLSVYKCSKLESIAERLDNNTSLETIGINFCENLKILPSGLHNLRQLREITIQRCGNLVSFPE-GGLPCAKLSEL 595 (814)
Q Consensus 517 ~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~-~~~~l~~L~~L 595 (814)
++++++|++++|......+..+..+++|++|++++|.+.+..+..+..+++|++|++++| .+..++. .+..+++|++|
T Consensus 27 ~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n-~l~~~~~~~~~~l~~L~~L 105 (208)
T 2o6s_A 27 PAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTN-QLQSLPNGVFDKLTQLKEL 105 (208)
T ss_dssp CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEE
T ss_pred CCCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCC-cCCccCHhHhcCccCCCEE
Confidence 457888888887766555666788999999999999888776667788999999999988 5556665 46788899999
Q ss_pred eeccccccccccc-cccCCCCcceEEecC-ccCcccc--CCCCCceeEEEecCCcchhhhhhhcccccCCCCcccEEEEe
Q 035579 596 RIFQCERLEALPK-GLHNLTSLQELTIGG-ALPSLEE--DGLPTNLHSLDIRGNMEIWKSMIERGRGFHRFSSLRHLTID 671 (814)
Q Consensus 596 ~l~~~~~l~~lp~-~~~~l~~L~~L~l~~-~~~~l~~--~~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~l~~L~~L~l~ 671 (814)
++++| .++.+|. .+..+++|+.|++++ .+..++. ...+++|++|++++|+. ...+++|+.|+++
T Consensus 106 ~L~~N-~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~-----------~~~~~~l~~L~~~ 173 (208)
T 2o6s_A 106 ALNTN-QLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPW-----------DCTCPGIRYLSEW 173 (208)
T ss_dssp ECCSS-CCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCB-----------CCCTTTTHHHHHH
T ss_pred EcCCC-cCcccCHhHhccCCcCCEEECCCCccceeCHHHhccCCCccEEEecCCCe-----------ecCCCCHHHHHHH
Confidence 99988 4555544 578899999999988 6776665 34578999999999943 3455677877777
Q ss_pred cCCCCCccCCccc
Q 035579 672 GCDDDMVSFPPED 684 (814)
Q Consensus 672 ~~~~~l~~i~~~~ 684 (814)
.|. ....+|...
T Consensus 174 ~n~-~~g~ip~~~ 185 (208)
T 2o6s_A 174 INK-HSGVVRNSA 185 (208)
T ss_dssp HHH-CTTTBBCTT
T ss_pred HHh-CCceeeccC
Confidence 742 334555544
No 112
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.31 E-value=5.8e-12 Score=133.76 Aligned_cols=169 Identities=17% Similarity=0.184 Sum_probs=92.9
Q ss_pred ceEeecccCCcccccccCCCCCCccEEEecCCCCceecCCC-CC-CCCCcceEeecccccccccc-ccccCCCCcceEEe
Q 035579 545 ETIGINFCENLKILPSGLHNLRQLREITIQRCGNLVSFPEG-GL-PCAKLSELRIFQCERLEALP-KGLHNLTSLQELTI 621 (814)
Q Consensus 545 ~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~-~~-~l~~L~~L~l~~~~~l~~lp-~~~~~l~~L~~L~l 621 (814)
+.++++++.+.. +|..+ .+.++.|++++| .+..++.. +. .+++|++|++++| .++.++ ..+..+++|++|++
T Consensus 21 ~~l~c~~~~l~~-iP~~~--~~~l~~L~Ls~N-~l~~l~~~~~~~~l~~L~~L~L~~N-~i~~i~~~~~~~l~~L~~L~L 95 (361)
T 2xot_A 21 NILSCSKQQLPN-VPQSL--PSYTALLDLSHN-NLSRLRAEWTPTRLTNLHSLLLSHN-HLNFISSEAFVPVPNLRYLDL 95 (361)
T ss_dssp TEEECCSSCCSS-CCSSC--CTTCSEEECCSS-CCCEECTTSSSSCCTTCCEEECCSS-CCCEECTTTTTTCTTCCEEEC
T ss_pred CEEEeCCCCcCc-cCccC--CCCCCEEECCCC-CCCccChhhhhhcccccCEEECCCC-cCCccChhhccCCCCCCEEEC
Confidence 467777765544 44443 245778888887 45555543 44 6778888888887 444443 45677777777777
Q ss_pred cC-ccCcccc--CCCCCceeEEEecCCcchhhhhhhcccccCCCCcccEEEEecCCCCCccCCccccccCCCCCCCCCcc
Q 035579 622 GG-ALPSLEE--DGLPTNLHSLDIRGNMEIWKSMIERGRGFHRFSSLRHLTIDGCDDDMVSFPPEDKRLGTALPLPASLT 698 (814)
Q Consensus 622 ~~-~~~~l~~--~~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~l~~i~~~~~~~~~~~~~~~~L~ 698 (814)
++ .+..++. ...+++|++|++++|.+....+ ..|..+++|++|++++| .+..+|...+.. ...+++|+
T Consensus 96 s~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~----~~~~~l~~L~~L~L~~N--~l~~l~~~~~~~---~~~l~~L~ 166 (361)
T 2xot_A 96 SSNHLHTLDEFLFSDLQALEVLLLYNNHIVVVDR----NAFEDMAQLQKLYLSQN--QISRFPVELIKD---GNKLPKLM 166 (361)
T ss_dssp CSSCCCEECTTTTTTCTTCCEEECCSSCCCEECT----TTTTTCTTCCEEECCSS--CCCSCCGGGTC-------CTTCC
T ss_pred CCCcCCcCCHHHhCCCcCCCEEECCCCcccEECH----HHhCCcccCCEEECCCC--cCCeeCHHHhcC---cccCCcCC
Confidence 66 5555443 2334566666666665544322 34555556666666555 455555443100 01245555
Q ss_pred eEEeccCCCCccccc-ccccCCC--CCeEEecC
Q 035579 699 DLEIGRFPNLERLSS-SIVDLQN--LTELCLRD 728 (814)
Q Consensus 699 ~L~l~~~~~l~~l~~-~~~~l~~--L~~L~l~~ 728 (814)
.|+|++ |.++.+|. .+..++. |+.|++++
T Consensus 167 ~L~L~~-N~l~~l~~~~~~~l~~~~l~~l~l~~ 198 (361)
T 2xot_A 167 LLDLSS-NKLKKLPLTDLQKLPAWVKNGLYLHN 198 (361)
T ss_dssp EEECCS-SCCCCCCHHHHHHSCHHHHTTEECCS
T ss_pred EEECCC-CCCCccCHHHhhhccHhhcceEEecC
Confidence 555555 45555553 3444444 24555555
No 113
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.27 E-value=5.1e-14 Score=157.81 Aligned_cols=198 Identities=13% Similarity=0.041 Sum_probs=122.4
Q ss_pred CcccccEEEEeccCCcchhhHhhcCCCCcceEeecccC-------------CcccccccCCCCCCccEEE-ecCCCCcee
Q 035579 516 LPATLESLSVYKCSKLESIAERLDNNTSLETIGINFCE-------------NLKILPSGLHNLRQLREIT-IQRCGNLVS 581 (814)
Q Consensus 516 ~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~-------------~~~~~~~~~~~l~~L~~L~-l~~~~~l~~ 581 (814)
..++|+.|++++|. ++.+|..++.+++|+.|++++|. ..+..|..++.+++|+.|+ ++.+ .+.
T Consensus 347 ~~~~L~~L~Ls~n~-L~~Lp~~i~~l~~L~~L~l~~n~~l~~l~~ll~~~~~~~~~~~~l~~l~~L~~L~~l~~n-~~~- 423 (567)
T 1dce_A 347 TDEQLFRCELSVEK-STVLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAA-YLD- 423 (567)
T ss_dssp TTTTSSSCCCCHHH-HHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCGGGHH-HHH-
T ss_pred cCccceeccCChhh-HHhhHHHHHHHHHHHHhccccchhhhhHHHHHHhcccccCCHHHHHHHHhcccCcchhhc-ccc-
Confidence 34567788888854 45788888888888888887664 3445555666666777666 3333 111
Q ss_pred cCCCCCCCCCcceEeeccccccccccccccCCCCcceEEecC-ccCccccCCCCCceeEEEecCCcchhhhhhhcccccC
Q 035579 582 FPEGGLPCAKLSELRIFQCERLEALPKGLHNLTSLQELTIGG-ALPSLEEDGLPTNLHSLDIRGNMEIWKSMIERGRGFH 660 (814)
Q Consensus 582 ~~~~~~~l~~L~~L~l~~~~~l~~lp~~~~~l~~L~~L~l~~-~~~~l~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~l~ 660 (814)
.|+.+.+.+| .+..+|. ..|+.|++++ .+..+|..+.+++|+.|++++|.+... + ..+.
T Consensus 424 ---------~L~~l~l~~n-~i~~l~~-----~~L~~L~Ls~n~l~~lp~~~~l~~L~~L~Ls~N~l~~l-p----~~~~ 483 (567)
T 1dce_A 424 ---------DLRSKFLLEN-SVLKMEY-----ADVRVLHLAHKDLTVLCHLEQLLLVTHLDLSHNRLRAL-P----PALA 483 (567)
T ss_dssp ---------HHHHHHHHHH-HHHHHHH-----TTCSEEECTTSCCSSCCCGGGGTTCCEEECCSSCCCCC-C----GGGG
T ss_pred ---------hhhhhhhhcc-cccccCc-----cCceEEEecCCCCCCCcCccccccCcEeecCccccccc-c----hhhh
Confidence 2333333333 2222221 1355555555 444444444456666666666665522 1 4567
Q ss_pred CCCcccEEEEecCCCCCccCCccccccCCCCCCCCCcceEEeccCCCCccc--ccccccCCCCCeEEecCCCCCCccCCC
Q 035579 661 RFSSLRHLTIDGCDDDMVSFPPEDKRLGTALPLPASLTDLEIGRFPNLERL--SSSIVDLQNLTELCLRDCPKLKYFPEK 738 (814)
Q Consensus 661 ~l~~L~~L~l~~~~~~l~~i~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l--~~~~~~l~~L~~L~l~~c~~l~~lp~~ 738 (814)
.+++|+.|++++| .+..+| .. ..+++|++|++++ |.++.+ |..+..+++|+.|++++| .++.+|+.
T Consensus 484 ~l~~L~~L~Ls~N--~l~~lp-~l-------~~l~~L~~L~Ls~-N~l~~~~~p~~l~~l~~L~~L~L~~N-~l~~~~~~ 551 (567)
T 1dce_A 484 ALRCLEVLQASDN--ALENVD-GV-------ANLPRLQELLLCN-NRLQQSAAIQPLVSCPRLVLLNLQGN-SLCQEEGI 551 (567)
T ss_dssp GCTTCCEEECCSS--CCCCCG-GG-------TTCSSCCEEECCS-SCCCSSSTTGGGGGCTTCCEEECTTS-GGGGSSSC
T ss_pred cCCCCCEEECCCC--CCCCCc-cc-------CCCCCCcEEECCC-CCCCCCCCcHHHhcCCCCCEEEecCC-cCCCCccH
Confidence 7778888888876 666666 33 4677888888888 677777 667788888888888874 56666653
Q ss_pred CC-----cCCccEEe
Q 035579 739 GL-----PSSLLRLS 748 (814)
Q Consensus 739 ~l-----~~~L~~L~ 748 (814)
.. +++|+.|+
T Consensus 552 ~~~l~~~lp~L~~L~ 566 (567)
T 1dce_A 552 QERLAEMLPSVSSIL 566 (567)
T ss_dssp TTHHHHHCTTCSEEE
T ss_pred HHHHHHHCcccCccC
Confidence 21 56666664
No 114
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.27 E-value=3.4e-11 Score=126.12 Aligned_cols=109 Identities=15% Similarity=0.161 Sum_probs=66.9
Q ss_pred cccccEEEEeccCCcchhhHhhcCCCCcceEeecccCCcccccccCCCCCCccEEEecCCCCceecCC-CCCCCCCcc-e
Q 035579 517 PATLESLSVYKCSKLESIAERLDNNTSLETIGINFCENLKILPSGLHNLRQLREITIQRCGNLVSFPE-GGLPCAKLS-E 594 (814)
Q Consensus 517 ~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~-~~~~l~~L~-~ 594 (814)
+.++..+.+.+.-...........+++|+.+++++|.+....+..|.++++|+++++.++ ++.++. .|..|++|+ .
T Consensus 201 ~~~~~~l~~~~~l~~~~~~~l~~~~~~L~~l~L~~n~i~~I~~~aF~~~~~L~~l~l~~n--i~~I~~~aF~~~~~L~~~ 278 (329)
T 3sb4_A 201 PRDINFLTIEGKLDNADFKLIRDYMPNLVSLDISKTNATTIPDFTFAQKKYLLKIKLPHN--LKTIGQRVFSNCGRLAGT 278 (329)
T ss_dssp GGGCSEEEEEECCCHHHHHHHHHHCTTCCEEECTTBCCCEECTTTTTTCTTCCEEECCTT--CCEECTTTTTTCTTCCEE
T ss_pred ccccceEEEeeeecHHHHHHHHHhcCCCeEEECCCCCcceecHhhhhCCCCCCEEECCcc--cceehHHHhhCChhccEE
Confidence 445667777664333333333334677888888877776666667777777888877765 555655 466677777 7
Q ss_pred Eeecccccccccc-ccccCCCCcceEEecC-ccCccc
Q 035579 595 LRIFQCERLEALP-KGLHNLTSLQELTIGG-ALPSLE 629 (814)
Q Consensus 595 L~l~~~~~l~~lp-~~~~~l~~L~~L~l~~-~~~~l~ 629 (814)
+++.+ .++.++ ..|.++++|+.+++++ .+..++
T Consensus 279 l~l~~--~l~~I~~~aF~~c~~L~~l~l~~n~i~~I~ 313 (329)
T 3sb4_A 279 LELPA--SVTAIEFGAFMGCDNLRYVLATGDKITTLG 313 (329)
T ss_dssp EEECT--TCCEECTTTTTTCTTEEEEEECSSCCCEEC
T ss_pred EEEcc--cceEEchhhhhCCccCCEEEeCCCccCccc
Confidence 77765 344443 4566666666666544 444443
No 115
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.27 E-value=2.4e-11 Score=119.74 Aligned_cols=129 Identities=19% Similarity=0.177 Sum_probs=92.0
Q ss_pred cccccEEEEeccCCcchhhHhhcCCCCcceEeecccCCcccccccCCCCCCccEEEecCCCCceecCC-CCCCCCCcceE
Q 035579 517 PATLESLSVYKCSKLESIAERLDNNTSLETIGINFCENLKILPSGLHNLRQLREITIQRCGNLVSFPE-GGLPCAKLSEL 595 (814)
Q Consensus 517 ~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~-~~~~l~~L~~L 595 (814)
+++|+.|++++|......+..+..+++|++|++++|.+....+..+..+++|++|++++| .+..++. .+..+++|++|
T Consensus 39 ~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N-~l~~l~~~~~~~l~~L~~L 117 (229)
T 3e6j_A 39 PTNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTN-QLTVLPSAVFDRLVHLKEL 117 (229)
T ss_dssp CTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEE
T ss_pred CCCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEECCCC-cCCccChhHhCcchhhCeE
Confidence 357788888887777666777888888888888888876665566778888888888887 5555654 35677888888
Q ss_pred eeccccccccccccccCCCCcceEEecC-ccCcccc--CCCCCceeEEEecCCcc
Q 035579 596 RIFQCERLEALPKGLHNLTSLQELTIGG-ALPSLEE--DGLPTNLHSLDIRGNME 647 (814)
Q Consensus 596 ~l~~~~~l~~lp~~~~~l~~L~~L~l~~-~~~~l~~--~~~~~~L~~L~l~~n~~ 647 (814)
++++| .++.+|..+..+++|+.|++++ .+..++. ...+++|+.|++++|+.
T Consensus 118 ~Ls~N-~l~~lp~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~ 171 (229)
T 3e6j_A 118 FMCCN-KLTELPRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGNPW 171 (229)
T ss_dssp ECCSS-CCCSCCTTGGGCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCB
T ss_pred eccCC-cccccCcccccCCCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCCc
Confidence 88887 5667777777777777777777 5555543 23345666666666654
No 116
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.26 E-value=9.5e-12 Score=132.11 Aligned_cols=151 Identities=13% Similarity=0.103 Sum_probs=93.3
Q ss_pred ccccEEEEeccCCcchhhHhhc-CCCCcceEeecccCCcccccccCCCCCCccEEEecCCCCceecCC-CCCCCCCcceE
Q 035579 518 ATLESLSVYKCSKLESIAERLD-NNTSLETIGINFCENLKILPSGLHNLRQLREITIQRCGNLVSFPE-GGLPCAKLSEL 595 (814)
Q Consensus 518 ~~L~~L~l~~~~~~~~~~~~~~-~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~-~~~~l~~L~~L 595 (814)
+.++.|++++|......+..+. .+++|+.|++++|.+.+..+..+..+++|++|++++| .+..++. .+..+++|++|
T Consensus 39 ~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L 117 (361)
T 2xot_A 39 SYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSN-HLHTLDEFLFSDLQALEVL 117 (361)
T ss_dssp TTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSS-CCCEECTTTTTTCTTCCEE
T ss_pred CCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCCC-cCCcCCHHHhCCCcCCCEE
Confidence 3566677776655554455555 6777777777777777666666777777777777776 3445544 46667777777
Q ss_pred eeccccccccccccccCCCCcceEEecC-ccCccccC-----CCCCceeEEEecCCcchhhhhhhcccccCCCCc--ccE
Q 035579 596 RIFQCERLEALPKGLHNLTSLQELTIGG-ALPSLEED-----GLPTNLHSLDIRGNMEIWKSMIERGRGFHRFSS--LRH 667 (814)
Q Consensus 596 ~l~~~~~l~~lp~~~~~l~~L~~L~l~~-~~~~l~~~-----~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~l~~--L~~ 667 (814)
++++|......|..+..+++|+.|++++ .+..++.. ..+++|+.|++++|.+..... ..+..++. ++.
T Consensus 118 ~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~----~~~~~l~~~~l~~ 193 (361)
T 2xot_A 118 LLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNKLKKLPL----TDLQKLPAWVKNG 193 (361)
T ss_dssp ECCSSCCCEECTTTTTTCTTCCEEECCSSCCCSCCGGGTC----CTTCCEEECCSSCCCCCCH----HHHHHSCHHHHTT
T ss_pred ECCCCcccEECHHHhCCcccCCEEECCCCcCCeeCHHHhcCcccCCcCCEEECCCCCCCccCH----HHhhhccHhhcce
Confidence 7777744333455667777777777776 55555442 235666666666666554332 23444554 356
Q ss_pred EEEecC
Q 035579 668 LTIDGC 673 (814)
Q Consensus 668 L~l~~~ 673 (814)
|++++|
T Consensus 194 l~l~~N 199 (361)
T 2xot_A 194 LYLHNN 199 (361)
T ss_dssp EECCSS
T ss_pred EEecCC
Confidence 666664
No 117
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.25 E-value=5.9e-11 Score=116.07 Aligned_cols=82 Identities=11% Similarity=0.021 Sum_probs=44.6
Q ss_pred ccEEEEeccCCcchhhHhhcCCCCcceEeecccCCcccccccCCCCCCccEEEecCCCCceecCCCCCCCCCcceEeecc
Q 035579 520 LESLSVYKCSKLESIAERLDNNTSLETIGINFCENLKILPSGLHNLRQLREITIQRCGNLVSFPEGGLPCAKLSELRIFQ 599 (814)
Q Consensus 520 L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~ 599 (814)
|++|++++|......+..+..+++|++|++++|.+.+..|..+..+++|++|++++|......|..+..+++|++|++++
T Consensus 83 L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~ 162 (220)
T 2v70_A 83 VNEILLTSNRLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLA 162 (220)
T ss_dssp CCEEECCSSCCCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEECCS
T ss_pred CCEEECCCCccCccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCCcCCEECHHHhcCCCCCCEEEecC
Confidence 44444444444333444455566666666666666665556666666666666666532222244555566666666666
Q ss_pred cc
Q 035579 600 CE 601 (814)
Q Consensus 600 ~~ 601 (814)
|+
T Consensus 163 N~ 164 (220)
T 2v70_A 163 NP 164 (220)
T ss_dssp CC
T ss_pred cC
Confidence 53
No 118
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.24 E-value=3.7e-11 Score=117.58 Aligned_cols=128 Identities=12% Similarity=0.130 Sum_probs=88.5
Q ss_pred ccccEEEEeccCCcchhhHhhcCCCCcceEeecccCCcccccccCCCCCCccEEEecCCCCceecCCC-CCCCCCcceEe
Q 035579 518 ATLESLSVYKCSKLESIAERLDNNTSLETIGINFCENLKILPSGLHNLRQLREITIQRCGNLVSFPEG-GLPCAKLSELR 596 (814)
Q Consensus 518 ~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~-~~~l~~L~~L~ 596 (814)
++++.|++++|......+..+..+++|+.|++++|.+.+..|..+..+++|++|++++| .+..+|.. +..+++|++|+
T Consensus 32 ~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N-~l~~l~~~~f~~l~~L~~L~ 110 (220)
T 2v9t_B 32 ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGN-KITELPKSLFEGLFSLQLLL 110 (220)
T ss_dssp TTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSS-CCCCCCTTTTTTCTTCCEEE
T ss_pred cCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCC-cCCccCHhHccCCCCCCEEE
Confidence 46777777777666555557788888888888888888777788888888888888887 55666654 56678888888
Q ss_pred eccccccccccccccCCCCcceEEecC-ccCcccc--CCCCCceeEEEecCCc
Q 035579 597 IFQCERLEALPKGLHNLTSLQELTIGG-ALPSLEE--DGLPTNLHSLDIRGNM 646 (814)
Q Consensus 597 l~~~~~l~~lp~~~~~l~~L~~L~l~~-~~~~l~~--~~~~~~L~~L~l~~n~ 646 (814)
+++|......|..+..+++|+.|++++ .+..++. ...+++|+.|++++|+
T Consensus 111 L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~ 163 (220)
T 2v9t_B 111 LNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNP 163 (220)
T ss_dssp CCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSC
T ss_pred CCCCCCCEeCHHHcCCCCCCCEEECCCCcCCEECHHHHhCCCCCCEEEeCCCC
Confidence 888844444455667777777777766 5555443 2234555555555554
No 119
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.23 E-value=7.7e-11 Score=115.28 Aligned_cols=105 Identities=10% Similarity=0.110 Sum_probs=62.8
Q ss_pred cccEEEEeccCCcchhhHhhcCCCCcceEeecccCCcccccccCCCCCCccEEEecCCCCceecCCCCCCCCCcceEeec
Q 035579 519 TLESLSVYKCSKLESIAERLDNNTSLETIGINFCENLKILPSGLHNLRQLREITIQRCGNLVSFPEGGLPCAKLSELRIF 598 (814)
Q Consensus 519 ~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~ 598 (814)
+|+.|++++|......+..+..+++|++|++++|.+.+..+..+..+++|++|++++|......|..+..+++|++|+++
T Consensus 58 ~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~ 137 (220)
T 2v70_A 58 QLRKINFSNNKITDIEEGAFEGASGVNEILLTSNRLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLY 137 (220)
T ss_dssp TCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECT
T ss_pred CCCEEECCCCcCCEECHHHhCCCCCCCEEECCCCccCccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECC
Confidence 45555555544444444456677777777777777776666667777777777777764333334556667777777777
Q ss_pred cccccccccccccCCCCcceEEecC
Q 035579 599 QCERLEALPKGLHNLTSLQELTIGG 623 (814)
Q Consensus 599 ~~~~l~~lp~~~~~l~~L~~L~l~~ 623 (814)
+|......|..+..+++|+.|++++
T Consensus 138 ~N~l~~~~~~~~~~l~~L~~L~L~~ 162 (220)
T 2v70_A 138 DNQITTVAPGAFDTLHSLSTLNLLA 162 (220)
T ss_dssp TSCCCCBCTTTTTTCTTCCEEECCS
T ss_pred CCcCCEECHHHhcCCCCCCEEEecC
Confidence 7643333355555555554444443
No 120
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.21 E-value=2.9e-11 Score=112.92 Aligned_cols=137 Identities=16% Similarity=0.138 Sum_probs=73.1
Q ss_pred CCCcceEeecccCCc-ccccccCCCCCCccEEEecCCCCceecCCCCCCCCCcceEeeccccccccccccccCCCCcceE
Q 035579 541 NTSLETIGINFCENL-KILPSGLHNLRQLREITIQRCGNLVSFPEGGLPCAKLSELRIFQCERLEALPKGLHNLTSLQEL 619 (814)
Q Consensus 541 l~~L~~L~L~~n~~~-~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~~~~l~~lp~~~~~l~~L~~L 619 (814)
.++|+.|++++|.+. +.+|..+..+++|++|++++|. +..+ ..+..+++|++|++++|.....+|..+..+++|+.|
T Consensus 23 ~~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~-l~~~-~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L 100 (168)
T 2ell_A 23 PAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVG-LISV-SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHL 100 (168)
T ss_dssp TTSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSC-CCCC-SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCEE
T ss_pred cccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCC-CCCh-hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCEE
Confidence 355666666666655 4555555666666666666663 4444 455566666666666664333355555555566655
Q ss_pred EecC-ccCccc---cCCCCCceeEEEecCCcchhhhhhhcccccCCCCcccEEEEecCCCCCccCCc
Q 035579 620 TIGG-ALPSLE---EDGLPTNLHSLDIRGNMEIWKSMIERGRGFHRFSSLRHLTIDGCDDDMVSFPP 682 (814)
Q Consensus 620 ~l~~-~~~~l~---~~~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~l~~i~~ 682 (814)
++++ .+..++ ....+++|++|++++|+........ ...+..+++|++|++++| ....+|.
T Consensus 101 ~Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~-~~~~~~l~~L~~L~l~~n--~~~~~~~ 164 (168)
T 2ell_A 101 NLSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYR-ESVFKLLPQLTYLDGYDR--EDQEAPD 164 (168)
T ss_dssp ECBSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHH-HHHHTTCSSCCEETTEET--TSCBCCS
T ss_pred eccCCccCcchhHHHHhcCCCCCEEEeeCCcCcchHHHH-HHHHHhCccCcEecCCCC--Chhhccc
Confidence 5555 333332 2333455666666666544332100 013555666666666665 4444443
No 121
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.17 E-value=4.5e-11 Score=111.59 Aligned_cols=134 Identities=17% Similarity=0.160 Sum_probs=78.7
Q ss_pred CCCccEEEecCCCCce--ecCCCCCCCCCcceEeeccccccccccccccCCCCcceEEecCccCccccCCCCCceeEEEe
Q 035579 565 LRQLREITIQRCGNLV--SFPEGGLPCAKLSELRIFQCERLEALPKGLHNLTSLQELTIGGALPSLEEDGLPTNLHSLDI 642 (814)
Q Consensus 565 l~~L~~L~l~~~~~l~--~~~~~~~~l~~L~~L~l~~~~~l~~lp~~~~~l~~L~~L~l~~~~~~l~~~~~~~~L~~L~l 642 (814)
.++|++|++++|. +. .+|..+..+++|++|++++|. ++.+ ..+.. +++|++|++
T Consensus 23 ~~~L~~L~l~~n~-l~~~~i~~~~~~l~~L~~L~l~~n~-l~~~-~~~~~---------------------l~~L~~L~L 78 (168)
T 2ell_A 23 PAAVRELVLDNCK-SNDGKIEGLTAEFVNLEFLSLINVG-LISV-SNLPK---------------------LPKLKKLEL 78 (168)
T ss_dssp TTSCSEEECCSCB-CBTTBCSSCCGGGGGCCEEEEESSC-CCCC-SSCCC---------------------CSSCCEEEE
T ss_pred cccCCEEECCCCC-CChhhHHHHHHhCCCCCEEeCcCCC-CCCh-hhhcc---------------------CCCCCEEEC
Confidence 4567777777763 33 566555666666666666663 3333 33333 345555555
Q ss_pred cCCcchhhhhhhcccccCCCCcccEEEEecCCCCCccCCc--cccccCCCCCCCCCcceEEeccCCCCccccc----ccc
Q 035579 643 RGNMEIWKSMIERGRGFHRFSSLRHLTIDGCDDDMVSFPP--EDKRLGTALPLPASLTDLEIGRFPNLERLSS----SIV 716 (814)
Q Consensus 643 ~~n~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~l~~i~~--~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~----~~~ 716 (814)
++|.+....+ ..+..+++|++|++++| .+..+|. .. ..+++|+.|++++ +.+..+|. .+.
T Consensus 79 s~N~l~~~~~----~~~~~l~~L~~L~Ls~N--~l~~~~~~~~l-------~~l~~L~~L~l~~-N~l~~~~~~~~~~~~ 144 (168)
T 2ell_A 79 SENRIFGGLD----MLAEKLPNLTHLNLSGN--KLKDISTLEPL-------KKLECLKSLDLFN-CEVTNLNDYRESVFK 144 (168)
T ss_dssp ESCCCCSCCC----HHHHHCTTCCEEECBSS--SCCSSGGGGGG-------SSCSCCCEEECCS-SGGGTSTTHHHHHHT
T ss_pred cCCcCchHHH----HHHhhCCCCCEEeccCC--ccCcchhHHHH-------hcCCCCCEEEeeC-CcCcchHHHHHHHHH
Confidence 5555443211 23445667777777775 5555542 22 3567777777777 56666665 566
Q ss_pred cCCCCCeEEecCCCCCCccCC
Q 035579 717 DLQNLTELCLRDCPKLKYFPE 737 (814)
Q Consensus 717 ~l~~L~~L~l~~c~~l~~lp~ 737 (814)
.+++|++|++++| .+..+|.
T Consensus 145 ~l~~L~~L~l~~n-~~~~~~~ 164 (168)
T 2ell_A 145 LLPQLTYLDGYDR-EDQEAPD 164 (168)
T ss_dssp TCSSCCEETTEET-TSCBCCS
T ss_pred hCccCcEecCCCC-Chhhccc
Confidence 7777777777775 4555554
No 122
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.13 E-value=1.7e-12 Score=145.40 Aligned_cols=156 Identities=15% Similarity=0.129 Sum_probs=90.5
Q ss_pred CcchhhHhhcCCCCcceEe-ecccCCccccc-----ccCCC--CCCccEEEecCCCCceecCCCCCCCCCcceEeecccc
Q 035579 530 KLESIAERLDNNTSLETIG-INFCENLKILP-----SGLHN--LRQLREITIQRCGNLVSFPEGGLPCAKLSELRIFQCE 601 (814)
Q Consensus 530 ~~~~~~~~~~~l~~L~~L~-L~~n~~~~~~~-----~~~~~--l~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~~~ 601 (814)
..+..|..++.+++|+.|+ ++.|....... ..+.. ...|+.|++++| .++.+|. +..+++|+.|++++|
T Consensus 397 ~~~~~~~~l~~l~~L~~L~~l~~n~~~~L~~l~l~~n~i~~l~~~~L~~L~Ls~n-~l~~lp~-~~~l~~L~~L~Ls~N- 473 (567)
T 1dce_A 397 PLLYEKETLQYFSTLKAVDPMRAAYLDDLRSKFLLENSVLKMEYADVRVLHLAHK-DLTVLCH-LEQLLLVTHLDLSHN- 473 (567)
T ss_dssp TGGGHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHHHHHHHHTTCSEEECTTS-CCSSCCC-GGGGTTCCEEECCSS-
T ss_pred cccCCHHHHHHHHhcccCcchhhcccchhhhhhhhcccccccCccCceEEEecCC-CCCCCcC-ccccccCcEeecCcc-
Confidence 4556777888888898888 55543211000 00000 124777777776 5556665 677777777777777
Q ss_pred ccccccccccCCCCcceEEecC-ccCccccCCCCCceeEEEecCCcchhhhhhhcccccCCCCcccEEEEecCCCCCccC
Q 035579 602 RLEALPKGLHNLTSLQELTIGG-ALPSLEEDGLPTNLHSLDIRGNMEIWKSMIERGRGFHRFSSLRHLTIDGCDDDMVSF 680 (814)
Q Consensus 602 ~l~~lp~~~~~l~~L~~L~l~~-~~~~l~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~l~~i 680 (814)
.++.+|..++.+++|+.|++++ .+..+|. +..+++|+.|++++| .+..+
T Consensus 474 ~l~~lp~~~~~l~~L~~L~Ls~N~l~~lp~----------------------------l~~l~~L~~L~Ls~N--~l~~~ 523 (567)
T 1dce_A 474 RLRALPPALAALRCLEVLQASDNALENVDG----------------------------VANLPRLQELLLCNN--RLQQS 523 (567)
T ss_dssp CCCCCCGGGGGCTTCCEEECCSSCCCCCGG----------------------------GTTCSSCCEEECCSS--CCCSS
T ss_pred cccccchhhhcCCCCCEEECCCCCCCCCcc----------------------------cCCCCCCcEEECCCC--CCCCC
Confidence 4557777676666666666655 4444433 445555566666554 44444
Q ss_pred --CccccccCCCCCCCCCcceEEeccCCCCccccccc----ccCCCCCeEEe
Q 035579 681 --PPEDKRLGTALPLPASLTDLEIGRFPNLERLSSSI----VDLQNLTELCL 726 (814)
Q Consensus 681 --~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~----~~l~~L~~L~l 726 (814)
|... ..+++|+.|++++ |.++.+|+.. ..+++|+.|++
T Consensus 524 ~~p~~l-------~~l~~L~~L~L~~-N~l~~~~~~~~~l~~~lp~L~~L~l 567 (567)
T 1dce_A 524 AAIQPL-------VSCPRLVLLNLQG-NSLCQEEGIQERLAEMLPSVSSILT 567 (567)
T ss_dssp STTGGG-------GGCTTCCEEECTT-SGGGGSSSCTTHHHHHCTTCSEEEC
T ss_pred CCcHHH-------hcCCCCCEEEecC-CcCCCCccHHHHHHHHCcccCccCC
Confidence 4443 3456666666666 4555555422 33677777653
No 123
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.12 E-value=2.5e-11 Score=110.81 Aligned_cols=128 Identities=17% Similarity=0.111 Sum_probs=66.9
Q ss_pred CCcceEeecccCCc-ccccccCCCCCCccEEEecCCCCceecCCCCCCCCCcceEeeccccccccccccccCCCCcceEE
Q 035579 542 TSLETIGINFCENL-KILPSGLHNLRQLREITIQRCGNLVSFPEGGLPCAKLSELRIFQCERLEALPKGLHNLTSLQELT 620 (814)
Q Consensus 542 ~~L~~L~L~~n~~~-~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~~~~l~~lp~~~~~l~~L~~L~ 620 (814)
++++.|++++|.+. +.+|..+..+++|++|++++| .+..+ ..+..+++|++|++++|.....+|..+..+++|++|+
T Consensus 17 ~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n-~l~~~-~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~ 94 (149)
T 2je0_A 17 SDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINV-GLTSI-ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHLN 94 (149)
T ss_dssp GGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTS-CCCCC-TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEEE
T ss_pred ccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCC-CCCCc-hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEEE
Confidence 34455555555444 344444455555555555555 33333 3444455555555555533222454444555555555
Q ss_pred ecC-ccCcc---ccCCCCCceeEEEecCCcchhhhhhhcccccCCCCcccEEEEec
Q 035579 621 IGG-ALPSL---EEDGLPTNLHSLDIRGNMEIWKSMIERGRGFHRFSSLRHLTIDG 672 (814)
Q Consensus 621 l~~-~~~~l---~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~l~~L~~L~l~~ 672 (814)
+++ .+..+ .....+++|++|++++|+....... ....+..+++|+.|++++
T Consensus 95 ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~-~~~~~~~l~~L~~L~l~d 149 (149)
T 2je0_A 95 LSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDY-RENVFKLLPQLTYLDGYD 149 (149)
T ss_dssp CTTSCCCSHHHHGGGGGCTTCCEEECTTCGGGGSTTH-HHHHHHHCTTCCEETTBC
T ss_pred CCCCcCCChHHHHHHhhCCCCCEEeCcCCcccchHHH-HHHHHHHCCCcccccCCC
Confidence 555 44333 2234456777777777766544220 002466778888887753
No 124
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.08 E-value=1e-10 Score=106.71 Aligned_cols=126 Identities=15% Similarity=0.108 Sum_probs=63.1
Q ss_pred CCCccEEEecCCCCc-eecCCCCCCCCCcceEeeccccccccccccccCCCCcceEEecCccCccccCCCCCceeEEEec
Q 035579 565 LRQLREITIQRCGNL-VSFPEGGLPCAKLSELRIFQCERLEALPKGLHNLTSLQELTIGGALPSLEEDGLPTNLHSLDIR 643 (814)
Q Consensus 565 l~~L~~L~l~~~~~l-~~~~~~~~~l~~L~~L~l~~~~~l~~lp~~~~~l~~L~~L~l~~~~~~l~~~~~~~~L~~L~l~ 643 (814)
.++|++|++++|... ..+|..+..+++|++|++++| .++.+ ..+.. +++|++|+++
T Consensus 16 ~~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n-~l~~~-~~~~~---------------------l~~L~~L~Ls 72 (149)
T 2je0_A 16 PSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINV-GLTSI-ANLPK---------------------LNKLKKLELS 72 (149)
T ss_dssp GGGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTS-CCCCC-TTCCC---------------------CTTCCEEECC
T ss_pred CccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCC-CCCCc-hhhhc---------------------CCCCCEEECC
Confidence 356666666666322 255555555666666666665 33333 23333 3445555555
Q ss_pred CCcchhhhhhhcccccCCCCcccEEEEecCCCCCccCC--ccccccCCCCCCCCCcceEEeccCCCCccccc----cccc
Q 035579 644 GNMEIWKSMIERGRGFHRFSSLRHLTIDGCDDDMVSFP--PEDKRLGTALPLPASLTDLEIGRFPNLERLSS----SIVD 717 (814)
Q Consensus 644 ~n~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~l~~i~--~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~----~~~~ 717 (814)
+|......+ ..+..+++|++|++++| .+..++ ... ..+++|++|++++ +.++.+|. .+..
T Consensus 73 ~n~i~~~~~----~~~~~l~~L~~L~ls~N--~i~~~~~~~~~-------~~l~~L~~L~l~~-N~l~~~~~~~~~~~~~ 138 (149)
T 2je0_A 73 DNRVSGGLE----VLAEKCPNLTHLNLSGN--KIKDLSTIEPL-------KKLENLKSLDLFN-CEVTNLNDYRENVFKL 138 (149)
T ss_dssp SSCCCSCTH----HHHHHCTTCCEEECTTS--CCCSHHHHGGG-------GGCTTCCEEECTT-CGGGGSTTHHHHHHHH
T ss_pred CCcccchHH----HHhhhCCCCCEEECCCC--cCCChHHHHHH-------hhCCCCCEEeCcC-CcccchHHHHHHHHHH
Confidence 554433211 23334555666666554 333332 222 2455566666665 35555543 3555
Q ss_pred CCCCCeEEec
Q 035579 718 LQNLTELCLR 727 (814)
Q Consensus 718 l~~L~~L~l~ 727 (814)
+++|+.|+++
T Consensus 139 l~~L~~L~l~ 148 (149)
T 2je0_A 139 LPQLTYLDGY 148 (149)
T ss_dssp CTTCCEETTB
T ss_pred CCCcccccCC
Confidence 6666666554
No 125
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=99.08 E-value=7.4e-09 Score=110.63 Aligned_cols=213 Identities=10% Similarity=0.085 Sum_probs=133.1
Q ss_pred cccEEEEeccCCcchhhHhhcCCCCcceEeecccCCcccccccCCCCCCccEEEecCCCCceecCC-CCCCCCCcceEee
Q 035579 519 TLESLSVYKCSKLESIAERLDNNTSLETIGINFCENLKILPSGLHNLRQLREITIQRCGNLVSFPE-GGLPCAKLSELRI 597 (814)
Q Consensus 519 ~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~-~~~~l~~L~~L~l 597 (814)
+|+.+.+.. .....-...|.++.+|+.+++..|.+.......|. +++|+.+.+..+ ++.++. .|..+++|+.+++
T Consensus 158 ~L~~i~lp~-~l~~I~~~aF~~c~~L~~l~l~~n~l~~I~~~aF~-~~~L~~l~lp~~--l~~I~~~aF~~~~~L~~l~l 233 (401)
T 4fdw_A 158 TVQEIVFPS-TLEQLKEDIFYYCYNLKKADLSKTKITKLPASTFV-YAGIEEVLLPVT--LKEIGSQAFLKTSQLKTIEI 233 (401)
T ss_dssp CCCEEECCT-TCCEECSSTTTTCTTCCEEECTTSCCSEECTTTTT-TCCCSEEECCTT--CCEECTTTTTTCTTCCCEEC
T ss_pred CceEEEeCC-CccEehHHHhhCcccCCeeecCCCcceEechhhEe-ecccCEEEeCCc--hheehhhHhhCCCCCCEEec
Confidence 466666654 22222344677788888888877766655555555 577888888643 556654 5667778888888
Q ss_pred ccccccccccc-cccCCCCcceEEecCccCcccc--CCCCCceeEEEecCCcchhhhh-hhcccccCCCCcccEEEEecC
Q 035579 598 FQCERLEALPK-GLHNLTSLQELTIGGALPSLEE--DGLPTNLHSLDIRGNMEIWKSM-IERGRGFHRFSSLRHLTIDGC 673 (814)
Q Consensus 598 ~~~~~l~~lp~-~~~~l~~L~~L~l~~~~~~l~~--~~~~~~L~~L~l~~n~~~~~~~-~~~~~~l~~l~~L~~L~l~~~ 673 (814)
..+ ++.++. .|.+ .+|+.+.+...+..++. ...+++|+.+++.++....... .....+|.++++|+.+++.+
T Consensus 234 ~~~--l~~I~~~aF~~-~~L~~i~lp~~i~~I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~~- 309 (401)
T 4fdw_A 234 PEN--VSTIGQEAFRE-SGITTVKLPNGVTNIASRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIPE- 309 (401)
T ss_dssp CTT--CCEECTTTTTT-CCCSEEEEETTCCEECTTTTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCCT-
T ss_pred CCC--ccCcccccccc-CCccEEEeCCCccEEChhHhhCCCCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeCC-
Confidence 763 455544 3444 67788877666655554 2335777777777665430000 00115677777888887764
Q ss_pred CCCCccCCccccccCCCCCCCCCcceEEeccCCCCccccc-ccccCCCCCeEEecCCCCCCccCCCCC---cCCccEEee
Q 035579 674 DDDMVSFPPEDKRLGTALPLPASLTDLEIGRFPNLERLSS-SIVDLQNLTELCLRDCPKLKYFPEKGL---PSSLLRLSI 749 (814)
Q Consensus 674 ~~~l~~i~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~-~~~~l~~L~~L~l~~c~~l~~lp~~~l---~~~L~~L~i 749 (814)
.+..++...+ ..+++|+.+.+.. .++.|+. .+.++ +|+.+++.+ +.+..++...+ +.+++.|++
T Consensus 310 --~i~~I~~~aF------~~c~~L~~l~lp~--~l~~I~~~aF~~~-~L~~l~l~~-n~~~~l~~~~F~~~~~~l~~l~v 377 (401)
T 4fdw_A 310 --SIRILGQGLL------GGNRKVTQLTIPA--NVTQINFSAFNNT-GIKEVKVEG-TTPPQVFEKVWYGFPDDITVIRV 377 (401)
T ss_dssp --TCCEECTTTT------TTCCSCCEEEECT--TCCEECTTSSSSS-CCCEEEECC-SSCCBCCCSSCCCSCTTCCEEEE
T ss_pred --ceEEEhhhhh------cCCCCccEEEECc--cccEEcHHhCCCC-CCCEEEEcC-CCCcccccccccCCCCCccEEEe
Confidence 4666666553 5567788887754 4677765 66677 788888877 35666665443 356677776
Q ss_pred cC
Q 035579 750 LS 751 (814)
Q Consensus 750 ~~ 751 (814)
-.
T Consensus 378 p~ 379 (401)
T 4fdw_A 378 PA 379 (401)
T ss_dssp CG
T ss_pred CH
Confidence 55
No 126
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.04 E-value=1.6e-10 Score=108.62 Aligned_cols=86 Identities=17% Similarity=0.225 Sum_probs=50.9
Q ss_pred cCCCCcccEEEEecCCCCCccCCccccccCCCCCCCCCcceEEeccCCCCccccc--ccccCCCCCeEEecCCCCCCccC
Q 035579 659 FHRFSSLRHLTIDGCDDDMVSFPPEDKRLGTALPLPASLTDLEIGRFPNLERLSS--SIVDLQNLTELCLRDCPKLKYFP 736 (814)
Q Consensus 659 l~~l~~L~~L~l~~~~~~l~~i~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~--~~~~l~~L~~L~l~~c~~l~~lp 736 (814)
+..+++|++|++++| .+..+|...+ ..+++|++|++++ |.++.+|. .+..+++|+.|++++| .+..+|
T Consensus 60 l~~l~~L~~L~Ls~N--~l~~~~~~~~------~~l~~L~~L~L~~-N~i~~~~~~~~l~~l~~L~~L~l~~N-~i~~~~ 129 (176)
T 1a9n_A 60 FPLLRRLKTLLVNNN--RICRIGEGLD------QALPDLTELILTN-NSLVELGDLDPLASLKSLTYLCILRN-PVTNKK 129 (176)
T ss_dssp CCCCSSCCEEECCSS--CCCEECSCHH------HHCTTCCEEECCS-CCCCCGGGGGGGGGCTTCCEEECCSS-GGGGST
T ss_pred cccCCCCCEEECCCC--cccccCcchh------hcCCCCCEEECCC-CcCCcchhhHhhhcCCCCCEEEecCC-CCCCcH
Confidence 445555666666655 4555554331 2356666666666 56666665 5666777777777774 455665
Q ss_pred CC---CC--cCCccEEeecCCch
Q 035579 737 EK---GL--PSSLLRLSILSCPL 754 (814)
Q Consensus 737 ~~---~l--~~~L~~L~i~~c~~ 754 (814)
.. .+ +++|++|++++|+.
T Consensus 130 ~~~~~~~~~l~~L~~Ld~~~n~~ 152 (176)
T 1a9n_A 130 HYRLYVIYKVPQVRVLDFQKVKL 152 (176)
T ss_dssp THHHHHHHHCTTCSEETTEECCH
T ss_pred hHHHHHHHHCCccceeCCCcCCH
Confidence 42 11 56777777777653
No 127
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.01 E-value=1.9e-09 Score=102.82 Aligned_cols=121 Identities=19% Similarity=0.291 Sum_probs=61.3
Q ss_pred cEEEecCCCCceecCCCCCCCCCcceEeeccccccccccccccCCCCcceEEecC-ccCccccCCCCCceeEEEecCCcc
Q 035579 569 REITIQRCGNLVSFPEGGLPCAKLSELRIFQCERLEALPKGLHNLTSLQELTIGG-ALPSLEEDGLPTNLHSLDIRGNME 647 (814)
Q Consensus 569 ~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~~~~l~~lp~~~~~l~~L~~L~l~~-~~~~l~~~~~~~~L~~L~l~~n~~ 647 (814)
+.++++++ .++.+|..+. ++|++|++++| .++.+|..+..+++|+.|++++ .+..++.
T Consensus 13 ~~l~~~~~-~l~~ip~~~~--~~l~~L~L~~n-~i~~ip~~~~~l~~L~~L~Ls~N~i~~i~~----------------- 71 (193)
T 2wfh_A 13 TVVRCSNK-GLKVLPKGIP--RDVTELYLDGN-QFTLVPKELSNYKHLTLIDLSNNRISTLSN----------------- 71 (193)
T ss_dssp TEEECTTS-CCSSCCSCCC--TTCCEEECCSS-CCCSCCGGGGGCTTCCEEECCSSCCCCCCT-----------------
T ss_pred CEEEcCCC-CCCcCCCCCC--CCCCEEECCCC-cCchhHHHhhcccCCCEEECCCCcCCEeCH-----------------
Confidence 45666665 4556665443 36777777776 4556665555555555555444 3333221
Q ss_pred hhhhhhhcccccCCCCcccEEEEecCCCCCccCCccccccCCCCCCCCCcceEEeccCCCCccccc-ccccCCCCCeEEe
Q 035579 648 IWKSMIERGRGFHRFSSLRHLTIDGCDDDMVSFPPEDKRLGTALPLPASLTDLEIGRFPNLERLSS-SIVDLQNLTELCL 726 (814)
Q Consensus 648 ~~~~~~~~~~~l~~l~~L~~L~l~~~~~~l~~i~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~-~~~~l~~L~~L~l 726 (814)
..|..+++|++|++++| .+..++...+ ..+++|+.|++++ |.++.+|. .+..+++|+.|++
T Consensus 72 ---------~~f~~l~~L~~L~Ls~N--~l~~i~~~~f------~~l~~L~~L~L~~-N~l~~~~~~~~~~l~~L~~L~L 133 (193)
T 2wfh_A 72 ---------QSFSNMTQLLTLILSYN--RLRCIPPRTF------DGLKSLRLLSLHG-NDISVVPEGAFNDLSALSHLAI 133 (193)
T ss_dssp ---------TTTTTCTTCCEEECCSS--CCCBCCTTTT------TTCTTCCEEECCS-SCCCBCCTTTTTTCTTCCEEEC
T ss_pred ---------hHccCCCCCCEEECCCC--ccCEeCHHHh------CCCCCCCEEECCC-CCCCeeChhhhhcCccccEEEe
Confidence 23444555555555554 3444443321 3345555555555 44555544 3445555555555
Q ss_pred cC
Q 035579 727 RD 728 (814)
Q Consensus 727 ~~ 728 (814)
++
T Consensus 134 ~~ 135 (193)
T 2wfh_A 134 GA 135 (193)
T ss_dssp CS
T ss_pred CC
Confidence 55
No 128
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=98.98 E-value=2.6e-08 Score=106.92 Aligned_cols=191 Identities=13% Similarity=0.066 Sum_probs=123.1
Q ss_pred HhhcCCCCcceEeecccCCcccccccCCCCCCccEEEecCCCCceecCCCCCCCCCcceEeeccccccccc-cccccCCC
Q 035579 536 ERLDNNTSLETIGINFCENLKILPSGLHNLRQLREITIQRCGNLVSFPEGGLPCAKLSELRIFQCERLEAL-PKGLHNLT 614 (814)
Q Consensus 536 ~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~~~~l~~l-p~~~~~l~ 614 (814)
..|.++.+|+.+.+..+ ....-...+.++..|+.+.+..+ ...+........+|+.+.+... ...+ ...+..+.
T Consensus 179 ~~F~~c~~L~~i~l~~~-~~~I~~~~F~~~~~L~~i~~~~~--~~~i~~~~~~~~~l~~i~ip~~--~~~i~~~~f~~~~ 253 (394)
T 4fs7_A 179 GLFSGCGKLKSIKLPRN-LKIIRDYCFAECILLENMEFPNS--LYYLGDFALSKTGVKNIIIPDS--FTELGKSVFYGCT 253 (394)
T ss_dssp TTTTTCTTCCBCCCCTT-CCEECTTTTTTCTTCCBCCCCTT--CCEECTTTTTTCCCCEEEECTT--CCEECSSTTTTCS
T ss_pred ccccCCCCceEEEcCCC-ceEeCchhhccccccceeecCCC--ceEeehhhcccCCCceEEECCC--ceecccccccccc
Confidence 34666777777776654 33333455667777777766553 2334444445567777776543 2333 23556777
Q ss_pred CcceEEecCccCcccc--CCCCCceeEEEecCCcchhhhhhhcccccCCCCcccEEEEecCCCCCccCCccccccCCCCC
Q 035579 615 SLQELTIGGALPSLEE--DGLPTNLHSLDIRGNMEIWKSMIERGRGFHRFSSLRHLTIDGCDDDMVSFPPEDKRLGTALP 692 (814)
Q Consensus 615 ~L~~L~l~~~~~~l~~--~~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~l~~i~~~~~~~~~~~~ 692 (814)
.++.+.+......+.. ...+..++.+......... ..+..+.+|+.+.+.+ .+..|+...+ .
T Consensus 254 ~l~~~~~~~~~~~i~~~~F~~~~~l~~~~~~~~~i~~-------~~F~~~~~L~~i~l~~---~i~~I~~~aF------~ 317 (394)
T 4fs7_A 254 DLESISIQNNKLRIGGSLFYNCSGLKKVIYGSVIVPE-------KTFYGCSSLTEVKLLD---SVKFIGEEAF------E 317 (394)
T ss_dssp SCCEEEECCTTCEECSCTTTTCTTCCEEEECSSEECT-------TTTTTCTTCCEEEECT---TCCEECTTTT------T
T ss_pred cceeEEcCCCcceeeccccccccccceeccCceeecc-------cccccccccccccccc---ccceechhhh------c
Confidence 7777777664333333 2335677777666553211 4677888888888865 4667766553 5
Q ss_pred CCCCcceEEeccCCCCccccc-ccccCCCCCeEEecCCCCCCccCCCCC--cCCccEEeecC
Q 035579 693 LPASLTDLEIGRFPNLERLSS-SIVDLQNLTELCLRDCPKLKYFPEKGL--PSSLLRLSILS 751 (814)
Q Consensus 693 ~~~~L~~L~l~~~~~l~~l~~-~~~~l~~L~~L~l~~c~~l~~lp~~~l--~~~L~~L~i~~ 751 (814)
.+++|+.+++.. .++.|+. .+.++++|+.+++.. .++.++...+ +++|+++++..
T Consensus 318 ~c~~L~~i~lp~--~v~~I~~~aF~~c~~L~~i~lp~--~l~~I~~~aF~~C~~L~~i~lp~ 375 (394)
T 4fs7_A 318 SCTSLVSIDLPY--LVEEIGKRSFRGCTSLSNINFPL--SLRKIGANAFQGCINLKKVELPK 375 (394)
T ss_dssp TCTTCCEECCCT--TCCEECTTTTTTCTTCCEECCCT--TCCEECTTTBTTCTTCCEEEEEG
T ss_pred CCCCCCEEEeCC--cccEEhHHhccCCCCCCEEEECc--cccEehHHHhhCCCCCCEEEECC
Confidence 678888888864 5778876 778888899888865 4888887766 67888888754
No 129
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=98.98 E-value=3.8e-10 Score=106.09 Aligned_cols=127 Identities=21% Similarity=0.192 Sum_probs=65.9
Q ss_pred cccEEEEeccCCcchhhHhhcCCC-CcceEeecccCCcccccccCCCCCCccEEEecCCCCceecCCCC-CCCCCcceEe
Q 035579 519 TLESLSVYKCSKLESIAERLDNNT-SLETIGINFCENLKILPSGLHNLRQLREITIQRCGNLVSFPEGG-LPCAKLSELR 596 (814)
Q Consensus 519 ~L~~L~l~~~~~~~~~~~~~~~l~-~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~-~~l~~L~~L~ 596 (814)
+|+.|++++|... .++. +..+. +|+.|++++|.+.+. ..+..+++|++|++++| .+..+|..+ ..+++|++|+
T Consensus 20 ~L~~L~l~~n~l~-~i~~-~~~~~~~L~~L~Ls~N~l~~~--~~l~~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L~ 94 (176)
T 1a9n_A 20 RDRELDLRGYKIP-VIEN-LGATLDQFDAIDFSDNEIRKL--DGFPLLRRLKTLLVNNN-RICRIGEGLDQALPDLTELI 94 (176)
T ss_dssp SCEEEECTTSCCC-SCCC-GGGGTTCCSEEECCSSCCCEE--CCCCCCSSCCEEECCSS-CCCEECSCHHHHCTTCCEEE
T ss_pred CceEEEeeCCCCc-hhHH-hhhcCCCCCEEECCCCCCCcc--cccccCCCCCEEECCCC-cccccCcchhhcCCCCCEEE
Confidence 4555555555433 2332 33333 666666666665554 45566666666666665 344555433 4556666666
Q ss_pred eccccccccccc--cccCCCCcceEEecCccCccccCCCCCceeEEEecCCcchhhhhhhcccccCCCCcccEEEEecC
Q 035579 597 IFQCERLEALPK--GLHNLTSLQELTIGGALPSLEEDGLPTNLHSLDIRGNMEIWKSMIERGRGFHRFSSLRHLTIDGC 673 (814)
Q Consensus 597 l~~~~~l~~lp~--~~~~l~~L~~L~l~~~~~~l~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~l~~L~~L~l~~~ 673 (814)
+++| .++.+|. .+..+ ++|+.|++++|+....... ....+..+++|+.|++++|
T Consensus 95 L~~N-~i~~~~~~~~l~~l---------------------~~L~~L~l~~N~i~~~~~~-~~~~~~~l~~L~~Ld~~~n 150 (176)
T 1a9n_A 95 LTNN-SLVELGDLDPLASL---------------------KSLTYLCILRNPVTNKKHY-RLYVIYKVPQVRVLDFQKV 150 (176)
T ss_dssp CCSC-CCCCGGGGGGGGGC---------------------TTCCEEECCSSGGGGSTTH-HHHHHHHCTTCSEETTEEC
T ss_pred CCCC-cCCcchhhHhhhcC---------------------CCCCEEEecCCCCCCcHhH-HHHHHHHCCccceeCCCcC
Confidence 6666 3444543 34444 4555555555554332110 0012556666777776665
No 130
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=98.98 E-value=1.2e-10 Score=134.92 Aligned_cols=117 Identities=15% Similarity=0.145 Sum_probs=83.5
Q ss_pred hhhHhhcCCCCcceEeecccCCcccccccCCCCCCccEEEecCCCCceecCCCCCCCCCcceEeeccccccccccccccC
Q 035579 533 SIAERLDNNTSLETIGINFCENLKILPSGLHNLRQLREITIQRCGNLVSFPEGGLPCAKLSELRIFQCERLEALPKGLHN 612 (814)
Q Consensus 533 ~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~~~~l~~lp~~~~~ 612 (814)
..+..+..+.+|+.|+|++|.+. .+|..+..+++|++|+|++| .+..+|..+..+++|++|+|++| .++.+|..+..
T Consensus 215 ~~~~~~~~l~~L~~L~Ls~n~l~-~l~~~~~~l~~L~~L~Ls~N-~l~~lp~~~~~l~~L~~L~Ls~N-~l~~lp~~~~~ 291 (727)
T 4b8c_D 215 MPKDSKYDDQLWHALDLSNLQIF-NISANIFKYDFLTRLYLNGN-SLTELPAEIKNLSNLRVLDLSHN-RLTSLPAELGS 291 (727)
T ss_dssp -------CCCCCCEEECTTSCCS-CCCGGGGGCCSCSCCBCTTS-CCSCCCGGGGGGTTCCEEECTTS-CCSSCCSSGGG
T ss_pred cChhhhccCCCCcEEECCCCCCC-CCChhhcCCCCCCEEEeeCC-cCcccChhhhCCCCCCEEeCcCC-cCCccChhhcC
Confidence 45667778888888888888776 55566667888888888887 45577777777888888888888 45577888888
Q ss_pred CCCcceEEecC-ccCcccc-CCCCCceeEEEecCCcchhhhh
Q 035579 613 LTSLQELTIGG-ALPSLEE-DGLPTNLHSLDIRGNMEIWKSM 652 (814)
Q Consensus 613 l~~L~~L~l~~-~~~~l~~-~~~~~~L~~L~l~~n~~~~~~~ 652 (814)
+++|++|+|++ .+..+|. .+.+++|++|+|++|++....+
T Consensus 292 l~~L~~L~L~~N~l~~lp~~~~~l~~L~~L~L~~N~l~~~~p 333 (727)
T 4b8c_D 292 CFQLKYFYFFDNMVTTLPWEFGNLCNLQFLGVEGNPLEKQFL 333 (727)
T ss_dssp GTTCSEEECCSSCCCCCCSSTTSCTTCCCEECTTSCCCSHHH
T ss_pred CCCCCEEECCCCCCCccChhhhcCCCccEEeCCCCccCCCCh
Confidence 88888888887 6666665 5557888888888888765544
No 131
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=98.97 E-value=3.3e-09 Score=99.76 Aligned_cols=106 Identities=23% Similarity=0.291 Sum_probs=73.0
Q ss_pred CCceeEEEecCCcchhhhhhhcccccCCCCcccEEEEecCCCCCccCCccccccCCCCCCCCCcceEEeccCCCCccccc
Q 035579 634 PTNLHSLDIRGNMEIWKSMIERGRGFHRFSSLRHLTIDGCDDDMVSFPPEDKRLGTALPLPASLTDLEIGRFPNLERLSS 713 (814)
Q Consensus 634 ~~~L~~L~l~~n~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~l~~i~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~ 713 (814)
+++|++|++++|....... ..+..+++|++|++++| .+..++...+ ..+++|++|++++ +.++.+|.
T Consensus 27 ~~~l~~L~l~~n~l~~~~~----~~~~~l~~L~~L~l~~n--~l~~~~~~~~------~~l~~L~~L~l~~-N~l~~~~~ 93 (177)
T 2o6r_A 27 PSSATRLELESNKLQSLPH----GVFDKLTQLTKLSLSQN--QIQSLPDGVF------DKLTKLTILYLHE-NKLQSLPN 93 (177)
T ss_dssp CTTCSEEECCSSCCCCCCT----TTTTTCTTCSEEECCSS--CCCCCCTTTT------TTCTTCCEEECCS-SCCCCCCT
T ss_pred CCCCcEEEeCCCcccEeCH----HHhcCcccccEEECCCC--cceEeChhHc------cCCCccCEEECCC-CCccccCH
Confidence 3566777777766544322 44677778888888776 6666666532 4577888888888 67777776
Q ss_pred -ccccCCCCCeEEecCCCCCCccCCCCC--cCCccEEeecCCc
Q 035579 714 -SIVDLQNLTELCLRDCPKLKYFPEKGL--PSSLLRLSILSCP 753 (814)
Q Consensus 714 -~~~~l~~L~~L~l~~c~~l~~lp~~~l--~~~L~~L~i~~c~ 753 (814)
.+..+++|++|+++++ .++.+|...+ +++|++|++++|+
T Consensus 94 ~~~~~l~~L~~L~l~~N-~l~~~~~~~~~~l~~L~~L~l~~N~ 135 (177)
T 2o6r_A 94 GVFDKLTQLKELALDTN-QLKSVPDGIFDRLTSLQKIWLHTNP 135 (177)
T ss_dssp TTTTTCTTCCEEECCSS-CCSCCCTTTTTTCTTCCEEECCSSC
T ss_pred HHhhCCcccCEEECcCC-cceEeCHHHhcCCcccCEEEecCCC
Confidence 4577788888888874 6777776543 6778888888775
No 132
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=98.97 E-value=3e-09 Score=101.43 Aligned_cols=106 Identities=12% Similarity=0.113 Sum_probs=70.3
Q ss_pred ccccEEEEeccCCcchhhH-hhcCCCCcceEeecccCCcccccccCCCCCCccEEEecCCCCceecCCCCCCCCCcceEe
Q 035579 518 ATLESLSVYKCSKLESIAE-RLDNNTSLETIGINFCENLKILPSGLHNLRQLREITIQRCGNLVSFPEGGLPCAKLSELR 596 (814)
Q Consensus 518 ~~L~~L~l~~~~~~~~~~~-~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~ 596 (814)
.++++|++++|......+. .+..+++|++|++++|.+.+..|..+..+++|++|++++|......+..+..+++|++|+
T Consensus 29 ~~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ 108 (192)
T 1w8a_A 29 LHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLN 108 (192)
T ss_dssp TTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSCCCCEECSSSSTTCTTCCEEE
T ss_pred CCCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCCCcCCccCHHHhcCCCCCCEEE
Confidence 3677777777654443332 377788888888888888777777788888888888888743333333466777888888
Q ss_pred eccccccccccccccCCCCcceEEecC
Q 035579 597 IFQCERLEALPKGLHNLTSLQELTIGG 623 (814)
Q Consensus 597 l~~~~~l~~lp~~~~~l~~L~~L~l~~ 623 (814)
+++|......|..+..+++|++|++++
T Consensus 109 L~~N~l~~~~~~~~~~l~~L~~L~L~~ 135 (192)
T 1w8a_A 109 LYDNQISCVMPGSFEHLNSLTSLNLAS 135 (192)
T ss_dssp CCSSCCCEECTTSSTTCTTCCEEECTT
T ss_pred CCCCcCCeeCHHHhhcCCCCCEEEeCC
Confidence 888754444565665555555555544
No 133
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=98.96 E-value=3.5e-09 Score=100.98 Aligned_cols=85 Identities=11% Similarity=0.056 Sum_probs=62.4
Q ss_pred cccEEEEeccCCcchhhHhhcCCCCcceEeecccCCcccccccCCCCCCccEEEecCCCCceecCCCCCCCCCcceEeec
Q 035579 519 TLESLSVYKCSKLESIAERLDNNTSLETIGINFCENLKILPSGLHNLRQLREITIQRCGNLVSFPEGGLPCAKLSELRIF 598 (814)
Q Consensus 519 ~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~ 598 (814)
+|++|++++|...+..|..+..+++|++|++++|.+.+..+..+..+++|++|++++|......|..+..+++|++|+++
T Consensus 55 ~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~ 134 (192)
T 1w8a_A 55 HLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLA 134 (192)
T ss_dssp TCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSCCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECT
T ss_pred CCCEEECCCCCCCCcCHhHcCCcccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeC
Confidence 46666666665555556677778888888888888887777778888888888888875555556677778888888888
Q ss_pred ccccc
Q 035579 599 QCERL 603 (814)
Q Consensus 599 ~~~~l 603 (814)
+|+..
T Consensus 135 ~N~l~ 139 (192)
T 1w8a_A 135 SNPFN 139 (192)
T ss_dssp TCCBC
T ss_pred CCCcc
Confidence 88543
No 134
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=98.96 E-value=2.3e-08 Score=106.77 Aligned_cols=212 Identities=10% Similarity=0.131 Sum_probs=159.8
Q ss_pred cccEEEEeccCCcchhhHhhcCCCCcceEeecccCCcccccccCCCCCCccEEEecCCCCceecCCCCCCCCCcceEeec
Q 035579 519 TLESLSVYKCSKLESIAERLDNNTSLETIGINFCENLKILPSGLHNLRQLREITIQRCGNLVSFPEGGLPCAKLSELRIF 598 (814)
Q Consensus 519 ~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~ 598 (814)
+|+.+.+..+ ....-..+|.+ .+|+.+.+.. .+...-+.+|.+|++|+.+++.+| .+..++.....+.+|+.+.+.
T Consensus 136 ~L~~i~l~~~-i~~I~~~aF~~-~~L~~i~lp~-~l~~I~~~aF~~c~~L~~l~l~~n-~l~~I~~~aF~~~~L~~l~lp 211 (401)
T 4fdw_A 136 QIAKVVLNEG-LKSIGDMAFFN-STVQEIVFPS-TLEQLKEDIFYYCYNLKKADLSKT-KITKLPASTFVYAGIEEVLLP 211 (401)
T ss_dssp CCSEEECCTT-CCEECTTTTTT-CCCCEEECCT-TCCEECSSTTTTCTTCCEEECTTS-CCSEECTTTTTTCCCSEEECC
T ss_pred CccEEEeCCC-ccEECHHhcCC-CCceEEEeCC-CccEehHHHhhCcccCCeeecCCC-cceEechhhEeecccCEEEeC
Confidence 4666666553 22223345666 4799999986 555566678999999999999987 778888866667899999997
Q ss_pred ccccccccc-ccccCCCCcceEEecCccCccccCCC-CCceeEEEecCCcchhhhhhhcccccCCCCcccEEEEecCCCC
Q 035579 599 QCERLEALP-KGLHNLTSLQELTIGGALPSLEEDGL-PTNLHSLDIRGNMEIWKSMIERGRGFHRFSSLRHLTIDGCDDD 676 (814)
Q Consensus 599 ~~~~l~~lp-~~~~~l~~L~~L~l~~~~~~l~~~~~-~~~L~~L~l~~n~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~ 676 (814)
.+ ++.++ ..|.++++|+.+++..++..++...+ ..+|+.+.+.++ ...... .+|.++++|+.+++.++...
T Consensus 212 ~~--l~~I~~~aF~~~~~L~~l~l~~~l~~I~~~aF~~~~L~~i~lp~~-i~~I~~----~aF~~c~~L~~l~l~~~~~~ 284 (401)
T 4fdw_A 212 VT--LKEIGSQAFLKTSQLKTIEIPENVSTIGQEAFRESGITTVKLPNG-VTNIAS----RAFYYCPELAEVTTYGSTFN 284 (401)
T ss_dssp TT--CCEECTTTTTTCTTCCCEECCTTCCEECTTTTTTCCCSEEEEETT-CCEECT----TTTTTCTTCCEEEEESSCCC
T ss_pred Cc--hheehhhHhhCCCCCCEEecCCCccCccccccccCCccEEEeCCC-ccEECh----hHhhCCCCCCEEEeCCcccc
Confidence 54 55554 47889999999999886666655322 278999999654 222212 68999999999999886211
Q ss_pred ---CccCCccccccCCCCCCCCCcceEEeccCCCCccccc-ccccCCCCCeEEecCCCCCCccCCCCC--cCCccEEeec
Q 035579 677 ---MVSFPPEDKRLGTALPLPASLTDLEIGRFPNLERLSS-SIVDLQNLTELCLRDCPKLKYFPEKGL--PSSLLRLSIL 750 (814)
Q Consensus 677 ---l~~i~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~-~~~~l~~L~~L~l~~c~~l~~lp~~~l--~~~L~~L~i~ 750 (814)
...++...+ ..+++|+.+++.+ .++.|+. .+.++++|+.+.+.. +++.++...+ + +|+++++.
T Consensus 285 ~~~~~~I~~~aF------~~c~~L~~l~l~~--~i~~I~~~aF~~c~~L~~l~lp~--~l~~I~~~aF~~~-~L~~l~l~ 353 (401)
T 4fdw_A 285 DDPEAMIHPYCL------EGCPKLARFEIPE--SIRILGQGLLGGNRKVTQLTIPA--NVTQINFSAFNNT-GIKEVKVE 353 (401)
T ss_dssp CCTTCEECTTTT------TTCTTCCEECCCT--TCCEECTTTTTTCCSCCEEEECT--TCCEECTTSSSSS-CCCEEEEC
T ss_pred CCcccEECHHHh------hCCccCCeEEeCC--ceEEEhhhhhcCCCCccEEEECc--cccEEcHHhCCCC-CCCEEEEc
Confidence 225666553 6789999999985 5899987 888999999999965 5899988777 6 99999999
Q ss_pred CC
Q 035579 751 SC 752 (814)
Q Consensus 751 ~c 752 (814)
++
T Consensus 354 ~n 355 (401)
T 4fdw_A 354 GT 355 (401)
T ss_dssp CS
T ss_pred CC
Confidence 86
No 135
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=98.95 E-value=2.2e-10 Score=132.58 Aligned_cols=110 Identities=18% Similarity=0.208 Sum_probs=78.7
Q ss_pred cccccCCCCCCccEEEecCCCCceecCCCCCCCCCcceEeeccccccccccccccCCCCcceEEecC-ccCcccc-CCCC
Q 035579 557 ILPSGLHNLRQLREITIQRCGNLVSFPEGGLPCAKLSELRIFQCERLEALPKGLHNLTSLQELTIGG-ALPSLEE-DGLP 634 (814)
Q Consensus 557 ~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~~~~l~~lp~~~~~l~~L~~L~l~~-~~~~l~~-~~~~ 634 (814)
..+..+..+++|+.|+|++| .+..+|..+..+++|++|+|++| .+..+|..+..+++|+.|+|++ .+..+|. .+.+
T Consensus 215 ~~~~~~~~l~~L~~L~Ls~n-~l~~l~~~~~~l~~L~~L~Ls~N-~l~~lp~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l 292 (727)
T 4b8c_D 215 MPKDSKYDDQLWHALDLSNL-QIFNISANIFKYDFLTRLYLNGN-SLTELPAEIKNLSNLRVLDLSHNRLTSLPAELGSC 292 (727)
T ss_dssp -------CCCCCCEEECTTS-CCSCCCGGGGGCCSCSCCBCTTS-CCSCCCGGGGGGTTCCEEECTTSCCSSCCSSGGGG
T ss_pred cChhhhccCCCCcEEECCCC-CCCCCChhhcCCCCCCEEEeeCC-cCcccChhhhCCCCCCEEeCcCCcCCccChhhcCC
Confidence 44677888999999999998 56688887778899999999998 5668888888888888888888 6666654 3446
Q ss_pred CceeEEEecCCcchhhhhhhcccccCCCCcccEEEEecC
Q 035579 635 TNLHSLDIRGNMEIWKSMIERGRGFHRFSSLRHLTIDGC 673 (814)
Q Consensus 635 ~~L~~L~l~~n~~~~~~~~~~~~~l~~l~~L~~L~l~~~ 673 (814)
++|++|+|++|.+... + ..|..+++|+.|+|++|
T Consensus 293 ~~L~~L~L~~N~l~~l-p----~~~~~l~~L~~L~L~~N 326 (727)
T 4b8c_D 293 FQLKYFYFFDNMVTTL-P----WEFGNLCNLQFLGVEGN 326 (727)
T ss_dssp TTCSEEECCSSCCCCC-C----SSTTSCTTCCCEECTTS
T ss_pred CCCCEEECCCCCCCcc-C----hhhhcCCCccEEeCCCC
Confidence 7777777777765422 1 44677777777777775
No 136
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=98.93 E-value=1.5e-11 Score=118.30 Aligned_cols=145 Identities=18% Similarity=0.209 Sum_probs=98.8
Q ss_pred ccEEEEeccC-CcchhhHhhcCCCCcceEeecccCCcccccccCCCCCCccEEEecCCCCceecCCCCCCCCCcceEeec
Q 035579 520 LESLSVYKCS-KLESIAERLDNNTSLETIGINFCENLKILPSGLHNLRQLREITIQRCGNLVSFPEGGLPCAKLSELRIF 598 (814)
Q Consensus 520 L~~L~l~~~~-~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~ 598 (814)
++...+.+.. .++.+|..+..+++|++|++++|.+.+ +| .+..+++|++|++++| .+..+|..+..+++|++|+++
T Consensus 25 l~~~~l~~~~~~l~~l~~~~~~l~~L~~L~ls~n~l~~-l~-~~~~l~~L~~L~l~~n-~l~~l~~~~~~~~~L~~L~L~ 101 (198)
T 1ds9_A 25 AEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIEK-IS-SLSGMENLRILSLGRN-LIKKIENLDAVADTLEELWIS 101 (198)
T ss_dssp CSEEECCBCCTTCCCCHHHHHHTTTCSEEECSEEEESC-CC-CHHHHTTCCEEEEEEE-EECSCSSHHHHHHHCSEEEEE
T ss_pred hheeEeccccCcHhhhhHHHhcCCCCCEEECCCCCCcc-cc-ccccCCCCCEEECCCC-CcccccchhhcCCcCCEEECc
Confidence 4444444432 345566688888899999998888776 55 7778888999999887 566777656666788899998
Q ss_pred cccccccccccccCCCCcceEEecC-ccCcccc---CCCCCceeEEEecCCcchhhhhh------hcccccCCCCcccEE
Q 035579 599 QCERLEALPKGLHNLTSLQELTIGG-ALPSLEE---DGLPTNLHSLDIRGNMEIWKSMI------ERGRGFHRFSSLRHL 668 (814)
Q Consensus 599 ~~~~l~~lp~~~~~l~~L~~L~l~~-~~~~l~~---~~~~~~L~~L~l~~n~~~~~~~~------~~~~~l~~l~~L~~L 668 (814)
+| .++.+| .+..+++|+.|++++ .+..++. ...+++|++|++++|+.....+. .....+..+++|+.|
T Consensus 102 ~N-~l~~l~-~~~~l~~L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~~l~~L~~L 179 (198)
T 1ds9_A 102 YN-QIASLS-GIEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKKL 179 (198)
T ss_dssp EE-ECCCHH-HHHHHHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSCHHHHHHHTTTTHHHHHHHHHHHCSSCSEE
T ss_pred CC-cCCcCC-ccccCCCCCEEECCCCcCCchhHHHHHhcCCCCCEEEecCCccccccccccchHHHHHHHHHhCCCcEEE
Confidence 88 556666 577778888888887 5555432 45567788888888876554321 000125566667766
Q ss_pred E
Q 035579 669 T 669 (814)
Q Consensus 669 ~ 669 (814)
+
T Consensus 180 d 180 (198)
T 1ds9_A 180 D 180 (198)
T ss_dssp C
T ss_pred C
Confidence 5
No 137
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=98.92 E-value=9.9e-12 Score=119.59 Aligned_cols=150 Identities=17% Similarity=0.171 Sum_probs=94.5
Q ss_pred hHhhcCCCCcceEeecccCCcccccc------cCCCCCCccEEEecCCCCceecCCCCCCCCCcceEeeccccccccccc
Q 035579 535 AERLDNNTSLETIGINFCENLKILPS------GLHNLRQLREITIQRCGNLVSFPEGGLPCAKLSELRIFQCERLEALPK 608 (814)
Q Consensus 535 ~~~~~~l~~L~~L~L~~n~~~~~~~~------~~~~l~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~~~~l~~lp~ 608 (814)
...+.....++.++++.+.+.+..|. .+..+++|++|++++| .+..+| .+..+++|++|++++| .++.+|.
T Consensus 11 ~~~~~~~~~l~~l~l~~~~l~~~~~~l~~l~~~~~~l~~L~~L~ls~n-~l~~l~-~~~~l~~L~~L~l~~n-~l~~l~~ 87 (198)
T 1ds9_A 11 IRIFEERKSVVATEAEKVELHGMIPPIEKMDATLSTLKACKHLALSTN-NIEKIS-SLSGMENLRILSLGRN-LIKKIEN 87 (198)
T ss_dssp HHHHHHTTCCCCTTCSEEECCBCCTTCCCCHHHHHHTTTCSEEECSEE-EESCCC-CHHHHTTCCEEEEEEE-EECSCSS
T ss_pred HHHHHhcccccCcchheeEeccccCcHhhhhHHHhcCCCCCEEECCCC-CCcccc-ccccCCCCCEEECCCC-Ccccccc
Confidence 33466677888888888888776665 7778888888888887 566677 6777788888888888 5556766
Q ss_pred cccCCCCcceEEecC-ccCccccCCCCCceeEEEecCCcchhhhhhhcccccCCCCcccEEEEecCCCCCccCCc--ccc
Q 035579 609 GLHNLTSLQELTIGG-ALPSLEEDGLPTNLHSLDIRGNMEIWKSMIERGRGFHRFSSLRHLTIDGCDDDMVSFPP--EDK 685 (814)
Q Consensus 609 ~~~~l~~L~~L~l~~-~~~~l~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~l~~i~~--~~~ 685 (814)
.+..+++|+.|++++ .+..++. +..+++|++|++++| .+..++. ..
T Consensus 88 ~~~~~~~L~~L~L~~N~l~~l~~----------------------------~~~l~~L~~L~l~~N--~i~~~~~~~~l- 136 (198)
T 1ds9_A 88 LDAVADTLEELWISYNQIASLSG----------------------------IEKLVNLRVLYMSNN--KITNWGEIDKL- 136 (198)
T ss_dssp HHHHHHHCSEEEEEEEECCCHHH----------------------------HHHHHHSSEEEESEE--ECCCHHHHHHH-
T ss_pred hhhcCCcCCEEECcCCcCCcCCc----------------------------cccCCCCCEEECCCC--cCCchhHHHHH-
Confidence 555555555555555 3333332 334455555555554 3443332 11
Q ss_pred ccCCCCCCCCCcceEEeccCCCCccccc-----------ccccCCCCCeEE
Q 035579 686 RLGTALPLPASLTDLEIGRFPNLERLSS-----------SIVDLQNLTELC 725 (814)
Q Consensus 686 ~~~~~~~~~~~L~~L~l~~~~~l~~l~~-----------~~~~l~~L~~L~ 725 (814)
..+++|++|++++ |.+...++ .+..+++|+.|+
T Consensus 137 ------~~l~~L~~L~l~~-N~l~~~~~~~~~~~~~~~~~~~~l~~L~~Ld 180 (198)
T 1ds9_A 137 ------AALDKLEDLLLAG-NPLYNDYKENNATSEYRIEVVKRLPNLKKLD 180 (198)
T ss_dssp ------TTTTTCSEEEECS-CHHHHHHHTTTTHHHHHHHHHHHCSSCSEEC
T ss_pred ------hcCCCCCEEEecC-CccccccccccchHHHHHHHHHhCCCcEEEC
Confidence 3456666666666 33433211 267788888886
No 138
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=98.87 E-value=7.8e-09 Score=98.47 Aligned_cols=104 Identities=18% Similarity=0.248 Sum_probs=71.5
Q ss_pred cccccEEEEeccCCcchhhHhhcCCCCcceEeecccCCcccccccCCCCCCccEEEecCCCCceecCC-CCCCCCCcceE
Q 035579 517 PATLESLSVYKCSKLESIAERLDNNTSLETIGINFCENLKILPSGLHNLRQLREITIQRCGNLVSFPE-GGLPCAKLSEL 595 (814)
Q Consensus 517 ~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~-~~~~l~~L~~L 595 (814)
++++++|++++|.. ..+|..+..+++|+.|++++|.+.+..+..|..+++|++|++++| .+..++. .+..+++|++|
T Consensus 30 ~~~l~~L~L~~n~i-~~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N-~l~~i~~~~f~~l~~L~~L 107 (193)
T 2wfh_A 30 PRDVTELYLDGNQF-TLVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYN-RLRCIPPRTFDGLKSLRLL 107 (193)
T ss_dssp CTTCCEEECCSSCC-CSCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS-CCCBCCTTTTTTCTTCCEE
T ss_pred CCCCCEEECCCCcC-chhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCC-ccCEeCHHHhCCCCCCCEE
Confidence 34677777777654 356677888888888888888888777777888888888888887 4455543 56777788888
Q ss_pred eeccccccccccc-cccCCCCcceEEecC
Q 035579 596 RIFQCERLEALPK-GLHNLTSLQELTIGG 623 (814)
Q Consensus 596 ~l~~~~~l~~lp~-~~~~l~~L~~L~l~~ 623 (814)
++++| .++.+|. .+..+++|+.|++++
T Consensus 108 ~L~~N-~l~~~~~~~~~~l~~L~~L~L~~ 135 (193)
T 2wfh_A 108 SLHGN-DISVVPEGAFNDLSALSHLAIGA 135 (193)
T ss_dssp ECCSS-CCCBCCTTTTTTCTTCCEEECCS
T ss_pred ECCCC-CCCeeChhhhhcCccccEEEeCC
Confidence 88887 4445543 344555555444443
No 139
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=98.79 E-value=2e-08 Score=94.36 Aligned_cols=81 Identities=15% Similarity=0.093 Sum_probs=40.7
Q ss_pred cccEEEEeccCCcchhhHhhcCCCCcceEeecccCCcccccccCCCCCCccEEEecCCCCceecCC-CCCCCCCcceEee
Q 035579 519 TLESLSVYKCSKLESIAERLDNNTSLETIGINFCENLKILPSGLHNLRQLREITIQRCGNLVSFPE-GGLPCAKLSELRI 597 (814)
Q Consensus 519 ~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~-~~~~l~~L~~L~l 597 (814)
+++.|++++|...+..+..+..+++|++|++++|.+.+..+..+..+++|++|++++| .++.+|. .+..+++|++|++
T Consensus 29 ~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N-~l~~~~~~~~~~l~~L~~L~l 107 (177)
T 2o6r_A 29 SATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHEN-KLQSLPNGVFDKLTQLKELAL 107 (177)
T ss_dssp TCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEEC
T ss_pred CCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCCC-CccccCHHHhhCCcccCEEEC
Confidence 4555555554443333334455555555555555555444444455555555555555 3333333 2344555555555
Q ss_pred ccc
Q 035579 598 FQC 600 (814)
Q Consensus 598 ~~~ 600 (814)
++|
T Consensus 108 ~~N 110 (177)
T 2o6r_A 108 DTN 110 (177)
T ss_dssp CSS
T ss_pred cCC
Confidence 555
No 140
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=98.76 E-value=4.1e-07 Score=97.57 Aligned_cols=61 Identities=15% Similarity=0.166 Sum_probs=35.1
Q ss_pred cccCCCCcccEEEEecCCCCCccCCccccccCCCCCCCCCcceEEeccCCCCccccc-ccccCCCCCeEEecC
Q 035579 657 RGFHRFSSLRHLTIDGCDDDMVSFPPEDKRLGTALPLPASLTDLEIGRFPNLERLSS-SIVDLQNLTELCLRD 728 (814)
Q Consensus 657 ~~l~~l~~L~~L~l~~~~~~l~~i~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~-~~~~l~~L~~L~l~~ 728 (814)
.+|.++.+|+.+++.+ .+..|....+ ..+++|+.+++.. .++.|+. .+.++++|+.+++..
T Consensus 314 ~aF~~c~~L~~i~lp~---~v~~I~~~aF------~~c~~L~~i~lp~--~l~~I~~~aF~~C~~L~~i~lp~ 375 (394)
T 4fs7_A 314 EAFESCTSLVSIDLPY---LVEEIGKRSF------RGCTSLSNINFPL--SLRKIGANAFQGCINLKKVELPK 375 (394)
T ss_dssp TTTTTCTTCCEECCCT---TCCEECTTTT------TTCTTCCEECCCT--TCCEECTTTBTTCTTCCEEEEEG
T ss_pred hhhcCCCCCCEEEeCC---cccEEhHHhc------cCCCCCCEEEECc--cccEehHHHhhCCCCCCEEEECC
Confidence 4456666666666643 3555554432 4556666666654 2566655 566666666666654
No 141
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=98.63 E-value=9.4e-08 Score=88.83 Aligned_cols=83 Identities=22% Similarity=0.290 Sum_probs=58.1
Q ss_pred CCceeEEEecCCcchhhhhhhcccccCCCCcccEEEEecCCCCCccCCccccccCCCCCCCCCcceEEeccCCCCccccc
Q 035579 634 PTNLHSLDIRGNMEIWKSMIERGRGFHRFSSLRHLTIDGCDDDMVSFPPEDKRLGTALPLPASLTDLEIGRFPNLERLSS 713 (814)
Q Consensus 634 ~~~L~~L~l~~n~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~l~~i~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~ 713 (814)
+++|++|++++|.+....+ ..|..+++|++|++++| .+..+|...+ ..+++|++|++++ |.++.+|.
T Consensus 29 ~~~l~~L~L~~N~i~~~~~----~~~~~l~~L~~L~Ls~N--~l~~l~~~~f------~~l~~L~~L~L~~-N~l~~~~~ 95 (170)
T 3g39_A 29 PTTTQVLYLYDNQITKLEP----GVFDRLTQLTRLDLDNN--QLTVLPAGVF------DKLTQLTQLSLND-NQLKSIPR 95 (170)
T ss_dssp CTTCSEEECCSSCCCCCCT----TTTTTCTTCSEEECCSS--CCCCCCTTTT------TTCTTCCEEECCS-SCCCCCCT
T ss_pred CCCCcEEEcCCCcCCccCh----hhhcCcccCCEEECCCC--CcCccChhhc------cCCCCCCEEECCC-CccCEeCH
Confidence 3667777777776655433 45777788888888876 6667776542 4567778888877 67777776
Q ss_pred -ccccCCCCCeEEecCC
Q 035579 714 -SIVDLQNLTELCLRDC 729 (814)
Q Consensus 714 -~~~~l~~L~~L~l~~c 729 (814)
.+..+++|++|+++++
T Consensus 96 ~~~~~l~~L~~L~L~~N 112 (170)
T 3g39_A 96 GAFDNLKSLTHIWLLNN 112 (170)
T ss_dssp TTTTTCTTCCEEECCSS
T ss_pred HHhcCCCCCCEEEeCCC
Confidence 4677777888877774
No 142
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=98.62 E-value=1e-07 Score=88.87 Aligned_cols=83 Identities=19% Similarity=0.275 Sum_probs=58.6
Q ss_pred CCceeEEEecCCcchhhhhhhcccccCCCCcccEEEEecCCCCCccCCccccccCCCCCCCCCcceEEeccCCCCccccc
Q 035579 634 PTNLHSLDIRGNMEIWKSMIERGRGFHRFSSLRHLTIDGCDDDMVSFPPEDKRLGTALPLPASLTDLEIGRFPNLERLSS 713 (814)
Q Consensus 634 ~~~L~~L~l~~n~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~l~~i~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~ 713 (814)
+++|++|++++|.+....+ ..|..+++|++|++++| .+..+|...+ ..+++|++|++++ |.++.+|.
T Consensus 32 ~~~L~~L~Ls~N~l~~~~~----~~~~~l~~L~~L~Ls~N--~l~~i~~~~~------~~l~~L~~L~L~~-N~l~~l~~ 98 (174)
T 2r9u_A 32 PTDKQRLWLNNNQITKLEP----GVFDHLVNLQQLYFNSN--KLTAIPTGVF------DKLTQLTQLDLND-NHLKSIPR 98 (174)
T ss_dssp CTTCSEEECCSSCCCCCCT----TTTTTCTTCCEEECCSS--CCCCCCTTTT------TTCTTCCEEECCS-SCCCCCCT
T ss_pred CCCCcEEEeCCCCccccCH----HHhcCCcCCCEEECCCC--CCCccChhHh------CCcchhhEEECCC-CccceeCH
Confidence 3667777777776655433 55777888888888876 6777776542 4567788888887 67777776
Q ss_pred -ccccCCCCCeEEecCC
Q 035579 714 -SIVDLQNLTELCLRDC 729 (814)
Q Consensus 714 -~~~~l~~L~~L~l~~c 729 (814)
.+..+++|++|+++++
T Consensus 99 ~~~~~l~~L~~L~L~~N 115 (174)
T 2r9u_A 99 GAFDNLKSLTHIYLYNN 115 (174)
T ss_dssp TTTTTCTTCSEEECCSS
T ss_pred HHhccccCCCEEEeCCC
Confidence 3677778888888774
No 143
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=98.62 E-value=8.2e-08 Score=89.55 Aligned_cols=98 Identities=20% Similarity=0.330 Sum_probs=57.2
Q ss_pred cEEEEeccCCcchhhHhhcCCCCcceEeecccCCcccccccCCCCCCccEEEecCCCCceecCCC-CCCCCCcceEeecc
Q 035579 521 ESLSVYKCSKLESIAERLDNNTSLETIGINFCENLKILPSGLHNLRQLREITIQRCGNLVSFPEG-GLPCAKLSELRIFQ 599 (814)
Q Consensus 521 ~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~-~~~l~~L~~L~l~~ 599 (814)
+.++++++. ++.+|..+. ++|+.|++++|.+.+..|..+..+++|++|++++| .+..+|.. +..+++|++|++++
T Consensus 15 ~~l~~~~n~-l~~iP~~~~--~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N-~l~~i~~~~~~~l~~L~~L~L~~ 90 (174)
T 2r9u_A 15 TLVNCQNIR-LASVPAGIP--TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSN-KLTAIPTGVFDKLTQLTQLDLND 90 (174)
T ss_dssp SEEECCSSC-CSSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCS
T ss_pred cEEEeCCCC-CCccCCCcC--CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCC-CCCccChhHhCCcchhhEEECCC
Confidence 445555533 344554332 56777777777776666666777777777777776 45555553 45666777777776
Q ss_pred cccccccccc-ccCCCCcceEEecC
Q 035579 600 CERLEALPKG-LHNLTSLQELTIGG 623 (814)
Q Consensus 600 ~~~l~~lp~~-~~~l~~L~~L~l~~ 623 (814)
| .++.+|.. +..+++|+.|++++
T Consensus 91 N-~l~~l~~~~~~~l~~L~~L~L~~ 114 (174)
T 2r9u_A 91 N-HLKSIPRGAFDNLKSLTHIYLYN 114 (174)
T ss_dssp S-CCCCCCTTTTTTCTTCSEEECCS
T ss_pred C-ccceeCHHHhccccCCCEEEeCC
Confidence 6 44444432 44555555554444
No 144
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=98.56 E-value=1.4e-07 Score=87.67 Aligned_cols=99 Identities=20% Similarity=0.288 Sum_probs=52.2
Q ss_pred ccEEEEeccCCcchhhHhhcCCCCcceEeecccCCcccccccCCCCCCccEEEecCCCCceecCCC-CCCCCCcceEeec
Q 035579 520 LESLSVYKCSKLESIAERLDNNTSLETIGINFCENLKILPSGLHNLRQLREITIQRCGNLVSFPEG-GLPCAKLSELRIF 598 (814)
Q Consensus 520 L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~-~~~l~~L~~L~l~ 598 (814)
.+.++++++. ++.+|..+ .++|+.|++++|.+.+..|..+..+++|++|++++| .+..+|.. +..+++|++|+++
T Consensus 11 ~~~l~~s~n~-l~~ip~~~--~~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N-~l~~l~~~~f~~l~~L~~L~L~ 86 (170)
T 3g39_A 11 GTTVDCSGKS-LASVPTGI--PTTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNN-QLTVLPAGVFDKLTQLTQLSLN 86 (170)
T ss_dssp TTEEECTTSC-CSSCCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSS-CCCCCCTTTTTTCTTCCEEECC
T ss_pred CCEEEeCCCC-cCccCccC--CCCCcEEEcCCCcCCccChhhhcCcccCCEEECCCC-CcCccChhhccCCCCCCEEECC
Confidence 3455555533 33344333 256666666666666665666666666666666665 34445443 3556666666666
Q ss_pred cccccccccc-cccCCCCcceEEecC
Q 035579 599 QCERLEALPK-GLHNLTSLQELTIGG 623 (814)
Q Consensus 599 ~~~~l~~lp~-~~~~l~~L~~L~l~~ 623 (814)
+| .++.+|. .+..+++|+.|++++
T Consensus 87 ~N-~l~~~~~~~~~~l~~L~~L~L~~ 111 (170)
T 3g39_A 87 DN-QLKSIPRGAFDNLKSLTHIWLLN 111 (170)
T ss_dssp SS-CCCCCCTTTTTTCTTCCEEECCS
T ss_pred CC-ccCEeCHHHhcCCCCCCEEEeCC
Confidence 66 3334433 344444444444433
No 145
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=98.50 E-value=8.1e-06 Score=87.40 Aligned_cols=105 Identities=13% Similarity=0.159 Sum_probs=54.2
Q ss_pred hhcCC-CCCeEEEecCCCcccchhhHHHHHHHHhhhccccccEEEeeccC--Ccccc-ccccCCCCCcceEeeecCCCCc
Q 035579 328 LQDIC-SLRRLTIRSCPKLQSLVAEEEKDQQQQLCELSCRLEYLILSCCE--GLVKL-PQSSLSLCSLREIGIYKCSSLV 403 (814)
Q Consensus 328 ~~~l~-~L~~L~l~~~~~l~~l~~~~~~~~~~~l~~~~~~L~~L~L~~~~--~~~~~-~~~~~~l~~L~~L~L~~~~~l~ 403 (814)
|..+. .|+.+.+.. .++.+....|.. |.+|+.+.+..+. .+..+ ...|..+.+|+.+.+.. .++
T Consensus 59 F~~~~~~L~sI~iP~--svt~Ig~~AF~~--------C~~L~~i~~~~n~p~~l~~Ig~~aF~~c~~L~~i~~~~--~~~ 126 (394)
T 4gt6_A 59 FCNYKYVLTSVQIPD--TVTEIGSNAFYN--------CTSLKRVTIQDNKPSCVKKIGRQAFMFCSELTDIPILD--SVT 126 (394)
T ss_dssp TTTCCSCCCEEEECT--TCCEECTTTTTT--------CTTCCEEEEGGGCCCCCCEECTTTTTTCTTCCBCGGGT--TCS
T ss_pred ccCCCCcCEEEEECC--CeeEEhHHHhhC--------CccCceEeecCCCCCeeeEechhhchhcccceeeccCC--ccc
Confidence 44443 466666654 355554433221 1566666665542 12222 23456666777666643 344
Q ss_pred ccCC--CCCCCCCcEEEecccCCCCCCchhhhcCCCCCccEEEEec
Q 035579 404 SFPE--VALPSKLEKIHIGACDALKSLPEAWMCDTNSSLEILYIEG 447 (814)
Q Consensus 404 ~~~~--~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~ 447 (814)
.++. +..+.+|+.+.+... +..+....+ ..+.+|+.+.+..
T Consensus 127 ~I~~~aF~~c~~L~~i~lp~~--~~~I~~~~F-~~c~~L~~i~~~~ 169 (394)
T 4gt6_A 127 EIDSEAFHHCEELDTVTIPEG--VTSVADGMF-SYCYSLHTVTLPD 169 (394)
T ss_dssp EECTTTTTTCTTCCEEECCTT--CCEECTTTT-TTCTTCCEEECCT
T ss_pred eehhhhhhhhcccccccccce--eeeecccce-ecccccccccccc
Confidence 4443 333667777777543 334444433 5566666666653
No 146
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=98.42 E-value=1.3e-05 Score=85.71 Aligned_cols=279 Identities=12% Similarity=0.140 Sum_probs=133.9
Q ss_pred hhhhhhcCCCCCeEEEecC--CCcccchhhHHHHHHHHhhhccccccEEEeeccCCcccc-ccccCCCCCcceEeeecCC
Q 035579 324 HNELLQDICSLRRLTIRSC--PKLQSLVAEEEKDQQQQLCELSCRLEYLILSCCEGLVKL-PQSSLSLCSLREIGIYKCS 400 (814)
Q Consensus 324 ~~~~~~~l~~L~~L~l~~~--~~l~~l~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~-~~~~~~l~~L~~L~L~~~~ 400 (814)
....|.++.+|+.+.+... ..++.+....|.. |.+|+.+.+..+ +..+ ...+..+.+|+.+.+..
T Consensus 79 g~~AF~~C~~L~~i~~~~n~p~~l~~Ig~~aF~~--------c~~L~~i~~~~~--~~~I~~~aF~~c~~L~~i~lp~-- 146 (394)
T 4gt6_A 79 GSNAFYNCTSLKRVTIQDNKPSCVKKIGRQAFMF--------CSELTDIPILDS--VTEIDSEAFHHCEELDTVTIPE-- 146 (394)
T ss_dssp CTTTTTTCTTCCEEEEGGGCCCCCCEECTTTTTT--------CTTCCBCGGGTT--CSEECTTTTTTCTTCCEEECCT--
T ss_pred hHHHhhCCccCceEeecCCCCCeeeEechhhchh--------cccceeeccCCc--cceehhhhhhhhcccccccccc--
Confidence 4456778888888888653 3456655443321 155665555433 2222 33567788888888864
Q ss_pred CCcccCC--CCCCCCCcEEEecccCCCCCCchhhhcCCCCCccEEEEecCCCCccccccc--CcCccceeeeccccCCcc
Q 035579 401 SLVSFPE--VALPSKLEKIHIGACDALKSLPEAWMCDTNSSLEILYIEGCRSLTYIAAVQ--LPSSLKNLQIHGCYNIKT 476 (814)
Q Consensus 401 ~l~~~~~--~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~--~~~~L~~L~l~~~~~l~~ 476 (814)
.++.++. +..+.+|+.+.+..+ +..+....| . ..+|+.+.+... ++.+.... .+.+++........ ..
T Consensus 147 ~~~~I~~~~F~~c~~L~~i~~~~~--~~~I~~~aF-~-~~~l~~i~ip~~--~~~i~~~af~~c~~l~~~~~~~~~-~~- 218 (394)
T 4gt6_A 147 GVTSVADGMFSYCYSLHTVTLPDS--VTAIEERAF-T-GTALTQIHIPAK--VTRIGTNAFSECFALSTITSDSES-YP- 218 (394)
T ss_dssp TCCEECTTTTTTCTTCCEEECCTT--CCEECTTTT-T-TCCCSEEEECTT--CCEECTTTTTTCTTCCEEEECCSS-SC-
T ss_pred eeeeecccceecccccccccccce--eeEeccccc-c-ccceeEEEECCc--ccccccchhhhccccceecccccc-cc-
Confidence 3455553 444788888888764 555555553 2 356777777542 22222221 12223332221110 00
Q ss_pred cccccCCCCCCCCCCCCCCccEEeecCCCCcccccccCCCcccccEEEEeccCCcchhhHhhcCCCCcceEeecccCCcc
Q 035579 477 LTVEEGIPSSSSSRYTSSILEHLSIVGCPSLTCIFSKNELPATLESLSVYKCSKLESIAERLDNNTSLETIGINFCENLK 556 (814)
Q Consensus 477 ~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~ 556 (814)
. ....-...+...............+..+.+.. .....-...|.++.+|+.+.+..+. ..
T Consensus 219 -----~-------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ip~-~v~~i~~~aF~~c~~L~~i~lp~~~-~~ 278 (394)
T 4gt6_A 219 -----A-------------IDNVLYEKSANGDYALIRYPSQREDPAFKIPN-GVARIETHAFDSCAYLASVKMPDSV-VS 278 (394)
T ss_dssp -----B-------------SSSCEEEECTTSCEEEEECCTTCCCSEEECCT-TEEEECTTTTTTCSSCCEEECCTTC-CE
T ss_pred -----c-------------ccceeecccccccccccccccccccceEEcCC-cceEcccceeeecccccEEeccccc-ce
Confidence 0 00000000000000000000001122222211 1111112346666667766665432 22
Q ss_pred cccccCCCCCCccEEEecCCCCceecCC-CCCCCCCcceEeecccccccccc-ccccCCCCcceEEecCccCcccc--CC
Q 035579 557 ILPSGLHNLRQLREITIQRCGNLVSFPE-GGLPCAKLSELRIFQCERLEALP-KGLHNLTSLQELTIGGALPSLEE--DG 632 (814)
Q Consensus 557 ~~~~~~~~l~~L~~L~l~~~~~l~~~~~-~~~~l~~L~~L~l~~~~~l~~lp-~~~~~l~~L~~L~l~~~~~~l~~--~~ 632 (814)
.-...+.++++|+.+.+.. .+..++. .|..|.+|+.+++..+ ++.+. ..|.++.+|+.+.+...+..+.. ..
T Consensus 279 I~~~aF~~c~~L~~i~l~~--~i~~I~~~aF~~c~~L~~i~lp~~--v~~I~~~aF~~C~~L~~i~ip~sv~~I~~~aF~ 354 (394)
T 4gt6_A 279 IGTGAFMNCPALQDIEFSS--RITELPESVFAGCISLKSIDIPEG--ITQILDDAFAGCEQLERIAIPSSVTKIPESAFS 354 (394)
T ss_dssp ECTTTTTTCTTCCEEECCT--TCCEECTTTTTTCTTCCEEECCTT--CCEECTTTTTTCTTCCEEEECTTCCBCCGGGGT
T ss_pred ecCcccccccccccccCCC--cccccCceeecCCCCcCEEEeCCc--ccEehHhHhhCCCCCCEEEECcccCEEhHhHhh
Confidence 3334566677777777753 3555554 4556677777777542 44442 35666667777766554444433 22
Q ss_pred CCCceeEEEecCCc
Q 035579 633 LPTNLHSLDIRGNM 646 (814)
Q Consensus 633 ~~~~L~~L~l~~n~ 646 (814)
.+++|+.+++.++.
T Consensus 355 ~C~~L~~i~~~~~~ 368 (394)
T 4gt6_A 355 NCTALNNIEYSGSR 368 (394)
T ss_dssp TCTTCCEEEESSCH
T ss_pred CCCCCCEEEECCce
Confidence 34556666655543
No 147
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=98.37 E-value=2.6e-08 Score=105.27 Aligned_cols=165 Identities=16% Similarity=0.073 Sum_probs=79.6
Q ss_pred cccEEEEeccCCcchhhHhhcC-----CCCcceEeecccCCcccccccC-CCCCCccEEEecCCCCceecC-----CCC-
Q 035579 519 TLESLSVYKCSKLESIAERLDN-----NTSLETIGINFCENLKILPSGL-HNLRQLREITIQRCGNLVSFP-----EGG- 586 (814)
Q Consensus 519 ~L~~L~l~~~~~~~~~~~~~~~-----l~~L~~L~L~~n~~~~~~~~~~-~~l~~L~~L~l~~~~~l~~~~-----~~~- 586 (814)
.|+.|++++|.........+.. .++|+.|+|++|.+.......+ ..+++|++|++++|. ++... ..+
T Consensus 73 ~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~-l~~~~~~~L~~~L~ 151 (372)
T 3un9_A 73 SLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNS-LGPEACKDLRDLLL 151 (372)
T ss_dssp TCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSC-CCHHHHHHHHHHHH
T ss_pred hCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCC-CCHHHHHHHHHHHH
Confidence 5666666666554433222222 2567777777776643221222 234566777777663 22211 111
Q ss_pred CCCCCcceEeecccccccc-----ccccccCCCCcceEEecCccCccccCCCCCceeEEEecCCcchhhhhhhcccccCC
Q 035579 587 LPCAKLSELRIFQCERLEA-----LPKGLHNLTSLQELTIGGALPSLEEDGLPTNLHSLDIRGNMEIWKSMIERGRGFHR 661 (814)
Q Consensus 587 ~~l~~L~~L~l~~~~~l~~-----lp~~~~~l~~L~~L~l~~~~~~l~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~ 661 (814)
...++|++|++++|. ++. ++..+.. .++|++|++++|.+...........+..
T Consensus 152 ~~~~~L~~L~Ls~n~-l~~~~~~~l~~~L~~---------------------~~~L~~L~Ls~N~l~~~g~~~L~~~L~~ 209 (372)
T 3un9_A 152 HDQCQITTLRLSNNP-LTAAGVAVLMEGLAG---------------------NTSVTHLSLLHTGLGDEGLELLAAQLDR 209 (372)
T ss_dssp STTCCCCEEECCSSC-CHHHHHHHHHHHHHT---------------------CSSCCEEECTTSSCHHHHHHHHHHHGGG
T ss_pred hcCCccceeeCCCCC-CChHHHHHHHHHHhc---------------------CCCcCEEeCCCCCCCcHHHHHHHHHHhc
Confidence 123466666666663 222 2222222 3456666666666544332211234556
Q ss_pred CCcccEEEEecCCCCCccCCccccccCCCCCCCCCcceEEeccCCCCccc
Q 035579 662 FSSLRHLTIDGCDDDMVSFPPEDKRLGTALPLPASLTDLEIGRFPNLERL 711 (814)
Q Consensus 662 l~~L~~L~l~~~~~~l~~i~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l 711 (814)
.++|++|++++| .+....... +..++...++|++|+|++ |.++..
T Consensus 210 ~~~L~~L~Ls~N--~i~~~g~~~--l~~~L~~~~~L~~L~Ls~-N~i~~~ 254 (372)
T 3un9_A 210 NRQLQELNVAYN--GAGDTAALA--LARAAREHPSLELLHLYF-NELSSE 254 (372)
T ss_dssp CSCCCEEECCSS--CCCHHHHHH--HHHHHHHCSSCCEEECTT-SSCCHH
T ss_pred CCCcCeEECCCC--CCCHHHHHH--HHHHHHhCCCCCEEeccC-CCCCHH
Confidence 667777777776 332211100 001112346788888887 456543
No 148
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=98.29 E-value=1.3e-06 Score=91.81 Aligned_cols=83 Identities=16% Similarity=0.075 Sum_probs=44.0
Q ss_pred cccccEEEEec-cCCcchhhHhhcCCCCcceEeecccCCcccccccCCCCCCccEEEecCCCCceecCCCCCCCCCcceE
Q 035579 517 PATLESLSVYK-CSKLESIAERLDNNTSLETIGINFCENLKILPSGLHNLRQLREITIQRCGNLVSFPEGGLPCAKLSEL 595 (814)
Q Consensus 517 ~~~L~~L~l~~-~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L 595 (814)
.++|+.|+|++ |......+..|.++++|+.|+|++|.+.+..|..|..+++|++|+|++| .+..+|........|+.|
T Consensus 30 ~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N-~l~~~~~~~~~~~~L~~l 108 (347)
T 2ifg_A 30 AENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFN-ALESLSWKTVQGLSLQEL 108 (347)
T ss_dssp CSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSS-CCSCCCSTTTCSCCCCEE
T ss_pred CCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCCC-ccceeCHHHcccCCceEE
Confidence 34466666654 3333333345556666666666666655555555556666666666655 344454433222236666
Q ss_pred eeccc
Q 035579 596 RIFQC 600 (814)
Q Consensus 596 ~l~~~ 600 (814)
++.+|
T Consensus 109 ~l~~N 113 (347)
T 2ifg_A 109 VLSGN 113 (347)
T ss_dssp ECCSS
T ss_pred EeeCC
Confidence 66555
No 149
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=98.23 E-value=0.00017 Score=76.71 Aligned_cols=291 Identities=12% Similarity=0.098 Sum_probs=135.2
Q ss_pred ccCCCCCcceEeeecCCCCcccCCC--CCCCCCcEEEecccCCCCCCchhhhcCCCCCccEEEEecCCCCcccccccCc-
Q 035579 384 SSLSLCSLREIGIYKCSSLVSFPEV--ALPSKLEKIHIGACDALKSLPEAWMCDTNSSLEILYIEGCRSLTYIAAVQLP- 460 (814)
Q Consensus 384 ~~~~l~~L~~L~L~~~~~l~~~~~~--~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~- 460 (814)
++....+|+.+.+.. .++.++.- ..+.+|+.+.+..+ +..+....| .++ +|+.+.+.. .++.++...+.
T Consensus 41 ~~~~~~~i~~v~ip~--~vt~Ig~~aF~~C~~L~~I~lp~~--v~~Ig~~aF-~~c-~l~~i~~~~--~l~~I~~~aF~~ 112 (379)
T 4h09_A 41 WYKDRDRISEVRVNS--GITSIGEANFNSCYNMTKVTVAST--VTSIGDGAF-ADT-KLQSYTGME--RVKKFGDYVFQG 112 (379)
T ss_dssp TGGGGGGCSEEEECT--TEEEECTTTTTTCTTCCEEEECTT--CCEECTTTT-TTC-CCCEEEECT--TCCEECTTTTTT
T ss_pred ccccccCCEEEEeCC--CccChHHHHhhCCCCCCEEEeCCc--ceEechhhh-cCC-CCceEECCc--eeeEeccceecc
Confidence 455567788888864 57777753 44788888888654 666666655 444 566666543 34444433221
Q ss_pred CccceeeeccccCCcccccccCCCCCCCCCCCCCCccEEeecCCCCcccccccCCCcccccEEEEeccCCcchhhHhhcC
Q 035579 461 SSLKNLQIHGCYNIKTLTVEEGIPSSSSSRYTSSILEHLSIVGCPSLTCIFSKNELPATLESLSVYKCSKLESIAERLDN 540 (814)
Q Consensus 461 ~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~ 540 (814)
.+|+.+.+... +. .+....+. ..+++.+.+... ....-...+..
T Consensus 113 ~~L~~i~lp~~--~~------~i~~~~F~---------------------------~~~l~~~~~~~~-v~~i~~~~f~~ 156 (379)
T 4h09_A 113 TDLDDFEFPGA--TT------EIGNYIFY---------------------------NSSVKRIVIPKS-VTTIKDGIGYK 156 (379)
T ss_dssp CCCSEEECCTT--CC------EECTTTTT---------------------------TCCCCEEEECTT-CCEECSCTTTT
T ss_pred CCcccccCCCc--cc------cccccccc---------------------------cceeeeeeccce-eeccccchhcc
Confidence 23444443321 11 00110000 011222222110 11111122344
Q ss_pred CCCcceEeecccCCcc------------cccccCCCCCCccEEEecCCCCceecCCCCCCCCCcceEeeccccccccc-c
Q 035579 541 NTSLETIGINFCENLK------------ILPSGLHNLRQLREITIQRCGNLVSFPEGGLPCAKLSELRIFQCERLEAL-P 607 (814)
Q Consensus 541 l~~L~~L~L~~n~~~~------------~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~~~~l~~l-p 607 (814)
+.+++...+..+.... .....+.....+..+.+... ........+..+.+|+.+.+..+ +..+ .
T Consensus 157 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~i~~~~f~~~~~l~~i~~~~~--~~~i~~ 233 (379)
T 4h09_A 157 AENLEKIEVSSNNKNYVAENYVLYNKNKTILESYPAAKTGTEFTIPST-VKTVTAYGFSYGKNLKKITITSG--VTTLGD 233 (379)
T ss_dssp CTTCCEEEECTTCSSEEEETTEEEETTSSEEEECCTTCCCSEEECCTT-CCEECTTTTTTCSSCSEEECCTT--CCEECT
T ss_pred cccccccccccccceeecccceecccccceeccccccccccccccccc-eeEEeecccccccccceeeeccc--eeEEcc
Confidence 4444444443322111 11122333344444444332 11112223444556666666442 2222 2
Q ss_pred ccccCCCCcceEEecCccCccccC--CCCCceeEEEecCCcchhhhhhhcccccCCCCcccEEEEecCCCCCccCCcccc
Q 035579 608 KGLHNLTSLQELTIGGALPSLEED--GLPTNLHSLDIRGNMEIWKSMIERGRGFHRFSSLRHLTIDGCDDDMVSFPPEDK 685 (814)
Q Consensus 608 ~~~~~l~~L~~L~l~~~~~~l~~~--~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~l~~i~~~~~ 685 (814)
..+..+..|+.+.+...+..+... ..+.+|+.+.+..+- ..... ..|..+++|+.+.+.++ .++.|+...+
T Consensus 234 ~~f~~~~~L~~i~lp~~v~~I~~~aF~~~~~l~~i~l~~~i-~~i~~----~aF~~c~~L~~i~l~~~--~i~~I~~~aF 306 (379)
T 4h09_A 234 GAFYGMKALDEIAIPKNVTSIGSFLLQNCTALKTLNFYAKV-KTVPY----LLCSGCSNLTKVVMDNS--AIETLEPRVF 306 (379)
T ss_dssp TTTTTCSSCCEEEECTTCCEECTTTTTTCTTCCEEEECCCC-SEECT----TTTTTCTTCCEEEECCT--TCCEECTTTT
T ss_pred ccccCCccceEEEcCCCccEeCccccceeehhccccccccc-eeccc----ccccccccccccccccc--ccceehhhhh
Confidence 345566666666665544444332 224556666554431 11111 45666666666666553 4555555443
Q ss_pred ccCCCCCCCCCcceEEeccCCCCccccc-ccccCCCCCeEEecCCCCCCccCCC
Q 035579 686 RLGTALPLPASLTDLEIGRFPNLERLSS-SIVDLQNLTELCLRDCPKLKYFPEK 738 (814)
Q Consensus 686 ~~~~~~~~~~~L~~L~l~~~~~l~~l~~-~~~~l~~L~~L~l~~c~~l~~lp~~ 738 (814)
..+.+|+.+.+.. .++.|+. .+.++++|+.+.+.. .++.|...
T Consensus 307 ------~~c~~L~~i~lp~--~l~~I~~~aF~~C~~L~~i~ip~--~v~~I~~~ 350 (379)
T 4h09_A 307 ------MDCVKLSSVTLPT--ALKTIQVYAFKNCKALSTISYPK--SITLIESG 350 (379)
T ss_dssp ------TTCTTCCEEECCT--TCCEECTTTTTTCTTCCCCCCCT--TCCEECTT
T ss_pred ------cCCCCCCEEEcCc--cccEEHHHHhhCCCCCCEEEECC--ccCEEchh
Confidence 4556666666653 3556655 555666666665543 34555443
No 150
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=98.20 E-value=2.9e-06 Score=89.19 Aligned_cols=99 Identities=26% Similarity=0.260 Sum_probs=72.2
Q ss_pred EEEEeccCCcchhhHhhcCCCCcceEeecc-cCCcccccccCCCCCCccEEEecCCCCceecC-CCCCCCCCcceEeecc
Q 035579 522 SLSVYKCSKLESIAERLDNNTSLETIGINF-CENLKILPSGLHNLRQLREITIQRCGNLVSFP-EGGLPCAKLSELRIFQ 599 (814)
Q Consensus 522 ~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~-n~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~-~~~~~l~~L~~L~l~~ 599 (814)
.++.++++.+..+|. +..+++|+.|+|++ |.+.+..+..|..+++|++|+|++|. +..++ ..|..+++|+.|+|++
T Consensus 12 ~v~~~~~n~l~~ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~-l~~~~~~~~~~l~~L~~L~l~~ 89 (347)
T 2ifg_A 12 GLRCTRDGALDSLHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSG-LRFVAPDAFHFTPRLSRLNLSF 89 (347)
T ss_dssp CEECCSSCCCTTTTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSC-CCEECTTGGGSCSCCCEEECCS
T ss_pred EEEcCCCCCCCccCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCc-cceeCHHHhcCCcCCCEEeCCC
Confidence 345555435666787 88888888888885 78877777788888888888888884 55554 4567888888888888
Q ss_pred ccccccccccccCCCCcceEEecC
Q 035579 600 CERLEALPKGLHNLTSLQELTIGG 623 (814)
Q Consensus 600 ~~~l~~lp~~~~~l~~L~~L~l~~ 623 (814)
| .+..+|........|+.|++.+
T Consensus 90 N-~l~~~~~~~~~~~~L~~l~l~~ 112 (347)
T 2ifg_A 90 N-ALESLSWKTVQGLSLQELVLSG 112 (347)
T ss_dssp S-CCSCCCSTTTCSCCCCEEECCS
T ss_pred C-ccceeCHHHcccCCceEEEeeC
Confidence 8 5566665443333488888887
No 151
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.18 E-value=2.2e-06 Score=89.62 Aligned_cols=169 Identities=17% Similarity=0.156 Sum_probs=81.8
Q ss_pred hHhhcCCCCcceEeecccCCc---------ccccccCCCCCCccEEEecCCCCceecCCCCCCCCCcceEeecccccccc
Q 035579 535 AERLDNNTSLETIGINFCENL---------KILPSGLHNLRQLREITIQRCGNLVSFPEGGLPCAKLSELRIFQCERLEA 605 (814)
Q Consensus 535 ~~~~~~l~~L~~L~L~~n~~~---------~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~~~~l~~ 605 (814)
......+++|+.|.+...... +.+...+..+|+|++|++++|..+ .++. + .+++|++|++..|.....
T Consensus 132 ~~s~~~l~~L~~L~l~~~~~e~~~is~~~~~~L~~ll~~~P~L~~L~L~g~~~l-~l~~-~-~~~~L~~L~L~~~~l~~~ 208 (362)
T 2ra8_A 132 VENKEKFAHFEGLFWGDIDFEEQEISWIEQVDLSPVLDAMPLLNNLKIKGTNNL-SIGK-K-PRPNLKSLEIISGGLPDS 208 (362)
T ss_dssp HTTHHHHTTCSEEEECCCCTTTCCGGGCBCCBCHHHHHTCTTCCEEEEECCBTC-BCCS-C-BCTTCSEEEEECSBCCHH
T ss_pred HHhhhhcchhhheeecCcchhhcccccccccCHHHHHhcCCCCcEEEEeCCCCc-eecc-c-cCCCCcEEEEecCCCChH
Confidence 334556677888877654221 123333455677777777776322 2332 2 256777777776632221
Q ss_pred ccccc--cCCCCcceEEecCccCccccCCCCCceeEEEecCCcchhhh-hhhccccc--CCCCcccEEEEecCCCCCcc-
Q 035579 606 LPKGL--HNLTSLQELTIGGALPSLEEDGLPTNLHSLDIRGNMEIWKS-MIERGRGF--HRFSSLRHLTIDGCDDDMVS- 679 (814)
Q Consensus 606 lp~~~--~~l~~L~~L~l~~~~~~l~~~~~~~~L~~L~l~~n~~~~~~-~~~~~~~l--~~l~~L~~L~l~~~~~~l~~- 679 (814)
....+ ..+++|+.|+|+.. .+...... .......+ ..+++|+.|++.+| .+..
T Consensus 209 ~l~~l~~~~lp~L~~L~L~~~-------------------~~~~~~~~~~~~l~~~l~~~~~p~Lr~L~L~~~--~i~~~ 267 (362)
T 2ra8_A 209 VVEDILGSDLPNLEKLVLYVG-------------------VEDYGFDGDMNVFRPLFSKDRFPNLKWLGIVDA--EEQNV 267 (362)
T ss_dssp HHHHHHHSBCTTCCEEEEECB-------------------CGGGTCCSCGGGTGGGSCTTTCTTCCEEEEESC--TTHHH
T ss_pred HHHHHHHccCCCCcEEEEecc-------------------ccccccchhHHHHHHHHhcCCCCCcCEEeCCCC--CCchH
Confidence 11122 24566666655310 00000000 00000011 23566666666654 2211
Q ss_pred CCccccccCCCCCCCCCcceEEeccCCCCcc-----cccccccCCCCCeEEecCCCCCC
Q 035579 680 FPPEDKRLGTALPLPASLTDLEIGRFPNLER-----LSSSIVDLQNLTELCLRDCPKLK 733 (814)
Q Consensus 680 i~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~-----l~~~~~~l~~L~~L~l~~c~~l~ 733 (814)
.+..+... ..+++|++|+|+. +.++. ++..+..+++|+.|++++| .+.
T Consensus 268 ~~~~la~a----~~~~~L~~LdLs~-n~L~d~G~~~L~~~L~~l~~L~~L~L~~n-~i~ 320 (362)
T 2ra8_A 268 VVEMFLES----DILPQLETMDISA-GVLTDEGARLLLDHVDKIKHLKFINMKYN-YLS 320 (362)
T ss_dssp HHHHHHHC----SSGGGCSEEECCS-SCCBHHHHHHHHTTHHHHTTCSEEECCSB-BCC
T ss_pred HHHHHHhC----ccCCCCCEEECCC-CCCChHHHHHHHhhcccCCcceEEECCCC-cCC
Confidence 11111000 2357777777776 55654 4445567788999999876 344
No 152
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=98.18 E-value=0.0002 Score=76.06 Aligned_cols=134 Identities=16% Similarity=0.132 Sum_probs=75.0
Q ss_pred cCCCCCCccEEEecCCCCceecCC-CCCCCCCcceEeecccccccccc-ccccCCCCcceEEecCccCcccc--CCCCCc
Q 035579 561 GLHNLRQLREITIQRCGNLVSFPE-GGLPCAKLSELRIFQCERLEALP-KGLHNLTSLQELTIGGALPSLEE--DGLPTN 636 (814)
Q Consensus 561 ~~~~l~~L~~L~l~~~~~l~~~~~-~~~~l~~L~~L~l~~~~~l~~lp-~~~~~l~~L~~L~l~~~~~~l~~--~~~~~~ 636 (814)
.+..+.+|+.+.+..+ +..+.. .+..+..|+.+.+..+ ++.+. ..+.++.+|+.+.+...+..++. ...+++
T Consensus 212 ~f~~~~~l~~i~~~~~--~~~i~~~~f~~~~~L~~i~lp~~--v~~I~~~aF~~~~~l~~i~l~~~i~~i~~~aF~~c~~ 287 (379)
T 4h09_A 212 GFSYGKNLKKITITSG--VTTLGDGAFYGMKALDEIAIPKN--VTSIGSFLLQNCTALKTLNFYAKVKTVPYLLCSGCSN 287 (379)
T ss_dssp TTTTCSSCSEEECCTT--CCEECTTTTTTCSSCCEEEECTT--CCEECTTTTTTCTTCCEEEECCCCSEECTTTTTTCTT
T ss_pred ccccccccceeeeccc--eeEEccccccCCccceEEEcCCC--ccEeCccccceeehhccccccccceeccccccccccc
Confidence 3445555666655432 333332 3445566666666443 33332 24556666666666554444443 233567
Q ss_pred eeEEEecCCcchhhhhhhcccccCCCCcccEEEEecCCCCCccCCccccccCCCCCCCCCcceEEeccCCCCccccc
Q 035579 637 LHSLDIRGNMEIWKSMIERGRGFHRFSSLRHLTIDGCDDDMVSFPPEDKRLGTALPLPASLTDLEIGRFPNLERLSS 713 (814)
Q Consensus 637 L~~L~l~~n~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~l~~i~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~ 713 (814)
|+.+.+.++....... .+|.++.+|+.+.+.. .+..|....+ ..+++|+++.+.. .++.|..
T Consensus 288 L~~i~l~~~~i~~I~~----~aF~~c~~L~~i~lp~---~l~~I~~~aF------~~C~~L~~i~ip~--~v~~I~~ 349 (379)
T 4h09_A 288 LTKVVMDNSAIETLEP----RVFMDCVKLSSVTLPT---ALKTIQVYAF------KNCKALSTISYPK--SITLIES 349 (379)
T ss_dssp CCEEEECCTTCCEECT----TTTTTCTTCCEEECCT---TCCEECTTTT------TTCTTCCCCCCCT--TCCEECT
T ss_pred cccccccccccceehh----hhhcCCCCCCEEEcCc---cccEEHHHHh------hCCCCCCEEEECC--ccCEEch
Confidence 7777776654333222 5678888888888865 4666666543 5567777777654 3555554
No 153
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=98.14 E-value=6.7e-08 Score=102.15 Aligned_cols=172 Identities=16% Similarity=0.077 Sum_probs=100.6
Q ss_pred CCCcceEeecccCCccccc----ccCC-CCCCccEEEecCCCCcee-cCCCCCCCCCcceEeeccccccccc-cccccCC
Q 035579 541 NTSLETIGINFCENLKILP----SGLH-NLRQLREITIQRCGNLVS-FPEGGLPCAKLSELRIFQCERLEAL-PKGLHNL 613 (814)
Q Consensus 541 l~~L~~L~L~~n~~~~~~~----~~~~-~l~~L~~L~l~~~~~l~~-~~~~~~~l~~L~~L~l~~~~~l~~l-p~~~~~l 613 (814)
++.|+.|++++|.+..... ..+. ..++|++|++++|..-.. +......+++|++|++++|. ++.. ...+...
T Consensus 71 ~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~-l~~~~~~~L~~~ 149 (372)
T 3un9_A 71 LSSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNS-LGPEACKDLRDL 149 (372)
T ss_dssp HTTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSC-CCHHHHHHHHHH
T ss_pred HhhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCC-CCHHHHHHHHHH
Confidence 4678888888888764322 2222 236788888887742111 11111224467777777763 2221 1111000
Q ss_pred CCcceEEecCccCccccCCCCCceeEEEecCCcchhhhhhhcccccCCCCcccEEEEecCCCCCccCCccccccCCCCCC
Q 035579 614 TSLQELTIGGALPSLEEDGLPTNLHSLDIRGNMEIWKSMIERGRGFHRFSSLRHLTIDGCDDDMVSFPPEDKRLGTALPL 693 (814)
Q Consensus 614 ~~L~~L~l~~~~~~l~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~l~~i~~~~~~~~~~~~~ 693 (814)
+ ....++|++|++++|.+...........+...++|++|++++| .+...... .+..++..
T Consensus 150 --------------L--~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N--~l~~~g~~--~L~~~L~~ 209 (372)
T 3un9_A 150 --------------L--LHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHT--GLGDEGLE--LLAAQLDR 209 (372)
T ss_dssp --------------H--HSTTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTS--SCHHHHHH--HHHHHGGG
T ss_pred --------------H--HhcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCC--CCCcHHHH--HHHHHHhc
Confidence 0 0124688999999998766443322245678899999999997 44321100 01111245
Q ss_pred CCCcceEEeccCCCCcc-----cccccccCCCCCeEEecCCCCCCcc
Q 035579 694 PASLTDLEIGRFPNLER-----LSSSIVDLQNLTELCLRDCPKLKYF 735 (814)
Q Consensus 694 ~~~L~~L~l~~~~~l~~-----l~~~~~~l~~L~~L~l~~c~~l~~l 735 (814)
.++|++|++++ |.++. +...+...++|++|++++| .++..
T Consensus 210 ~~~L~~L~Ls~-N~i~~~g~~~l~~~L~~~~~L~~L~Ls~N-~i~~~ 254 (372)
T 3un9_A 210 NRQLQELNVAY-NGAGDTAALALARAAREHPSLELLHLYFN-ELSSE 254 (372)
T ss_dssp CSCCCEEECCS-SCCCHHHHHHHHHHHHHCSSCCEEECTTS-SCCHH
T ss_pred CCCcCeEECCC-CCCCHHHHHHHHHHHHhCCCCCEEeccCC-CCCHH
Confidence 67999999999 56764 3345567799999999996 56654
No 154
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.12 E-value=5.5e-06 Score=86.60 Aligned_cols=81 Identities=19% Similarity=0.099 Sum_probs=42.8
Q ss_pred ccccEEEeeccCC---------ccccccccCCCCCcceEeeecCCCCcccCCCCCCCCCcEEEecccCCCCCCchhhhcC
Q 035579 365 CRLEYLILSCCEG---------LVKLPQSSLSLCSLREIGIYKCSSLVSFPEVALPSKLEKIHIGACDALKSLPEAWMCD 435 (814)
Q Consensus 365 ~~L~~L~L~~~~~---------~~~~~~~~~~l~~L~~L~L~~~~~l~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~ 435 (814)
++|+.|.+..... ...+...+..+|+|++|.|++|..+ .++.+ ..++|++|++..|.........+...
T Consensus 139 ~~L~~L~l~~~~~e~~~is~~~~~~L~~ll~~~P~L~~L~L~g~~~l-~l~~~-~~~~L~~L~L~~~~l~~~~l~~l~~~ 216 (362)
T 2ra8_A 139 AHFEGLFWGDIDFEEQEISWIEQVDLSPVLDAMPLLNNLKIKGTNNL-SIGKK-PRPNLKSLEIISGGLPDSVVEDILGS 216 (362)
T ss_dssp TTCSEEEECCCCTTTCCGGGCBCCBCHHHHHTCTTCCEEEEECCBTC-BCCSC-BCTTCSEEEEECSBCCHHHHHHHHHS
T ss_pred chhhheeecCcchhhcccccccccCHHHHHhcCCCCcEEEEeCCCCc-eeccc-cCCCCcEEEEecCCCChHHHHHHHHc
Confidence 6677776654321 0123344556777888888775332 23332 26777777777665221111111113
Q ss_pred CCCCccEEEEec
Q 035579 436 TNSSLEILYIEG 447 (814)
Q Consensus 436 ~l~~L~~L~l~~ 447 (814)
.+++|+.|+|+.
T Consensus 217 ~lp~L~~L~L~~ 228 (362)
T 2ra8_A 217 DLPNLEKLVLYV 228 (362)
T ss_dssp BCTTCCEEEEEC
T ss_pred cCCCCcEEEEec
Confidence 567777777753
No 155
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=98.05 E-value=2.2e-06 Score=78.21 Aligned_cols=87 Identities=9% Similarity=0.078 Sum_probs=48.0
Q ss_pred cccEEEeeccCCccccccccCCCCCcceEeeecCCCCcccC--CCCC----CCCCcEEEecccCCCCCCchhhhcCCCCC
Q 035579 366 RLEYLILSCCEGLVKLPQSSLSLCSLREIGIYKCSSLVSFP--EVAL----PSKLEKIHIGACDALKSLPEAWMCDTNSS 439 (814)
Q Consensus 366 ~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~L~~~~~l~~~~--~~~~----~~~L~~L~l~~~~~l~~~~~~~~~~~l~~ 439 (814)
+|+.||+++|.+...--..+..+++|++|+|++|..+++-. .++. .++|++|++++|..+++-.-..+ ..+++
T Consensus 62 ~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L-~~~~~ 140 (176)
T 3e4g_A 62 KIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIAL-HHFRN 140 (176)
T ss_dssp CEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHG-GGCTT
T ss_pred eEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHH-hcCCC
Confidence 45666666665433323345566777777777776665522 1222 23566666666655544222222 44667
Q ss_pred ccEEEEecCCCCcc
Q 035579 440 LEILYIEGCRSLTY 453 (814)
Q Consensus 440 L~~L~l~~~~~l~~ 453 (814)
|++|++++|+.+++
T Consensus 141 L~~L~L~~c~~Itd 154 (176)
T 3e4g_A 141 LKYLFLSDLPGVKE 154 (176)
T ss_dssp CCEEEEESCTTCCC
T ss_pred CCEEECCCCCCCCc
Confidence 77777777766654
No 156
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=97.98 E-value=5.4e-06 Score=75.65 Aligned_cols=89 Identities=16% Similarity=0.220 Sum_probs=46.4
Q ss_pred CceeEEEecCCcchhhhhhhcccccCCCCcccEEEEecCCCCCccCCccccccCCCCCC----CCCcceEEeccCCCCcc
Q 035579 635 TNLHSLDIRGNMEIWKSMIERGRGFHRFSSLRHLTIDGCDDDMVSFPPEDKRLGTALPL----PASLTDLEIGRFPNLER 710 (814)
Q Consensus 635 ~~L~~L~l~~n~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~l~~i~~~~~~~~~~~~~----~~~L~~L~l~~~~~l~~ 710 (814)
..|++|++++|.+..... ..+..+++|++|++++|. .+ .+..-. .+.. .++|++|+|++|++++.
T Consensus 61 ~~L~~LDLs~~~Itd~GL----~~L~~~~~L~~L~L~~C~-~I---tD~gL~---~L~~~~~~~~~L~~L~Ls~C~~ITD 129 (176)
T 3e4g_A 61 YKIQAIDATDSCIMSIGF----DHMEGLQYVEKIRLCKCH-YI---EDGCLE---RLSQLENLQKSMLEMEIISCGNVTD 129 (176)
T ss_dssp CCEEEEEEESCCCCGGGG----GGGTTCSCCCEEEEESCT-TC---CHHHHH---HHHTCHHHHHHCCEEEEESCTTCCH
T ss_pred ceEeEEeCcCCCccHHHH----HHhcCCCCCCEEEeCCCC-cc---CHHHHH---HHHhcccccCCCCEEEcCCCCcCCH
Confidence 457777777776544433 345666677777777652 11 111100 0001 13566666666666654
Q ss_pred ccc-ccccCCCCCeEEecCCCCCCc
Q 035579 711 LSS-SIVDLQNLTELCLRDCPKLKY 734 (814)
Q Consensus 711 l~~-~~~~l~~L~~L~l~~c~~l~~ 734 (814)
-.- .+..+++|++|++++|+.+++
T Consensus 130 ~Gl~~L~~~~~L~~L~L~~c~~Itd 154 (176)
T 3e4g_A 130 KGIIALHHFRNLKYLFLSDLPGVKE 154 (176)
T ss_dssp HHHHHGGGCTTCCEEEEESCTTCCC
T ss_pred HHHHHHhcCCCCCEEECCCCCCCCc
Confidence 221 344566666666666665554
No 157
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=97.28 E-value=0.00011 Score=68.94 Aligned_cols=118 Identities=7% Similarity=0.041 Sum_probs=70.2
Q ss_pred hhhhhhcCCCCCeEEEecCCCcccchhhHHHHHHHHhhhccccccEEEeeccCCccc----cccccCCCCCcceEeeecC
Q 035579 324 HNELLQDICSLRRLTIRSCPKLQSLVAEEEKDQQQQLCELSCRLEYLILSCCEGLVK----LPQSSLSLCSLREIGIYKC 399 (814)
Q Consensus 324 ~~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~----~~~~~~~l~~L~~L~L~~~ 399 (814)
....+...++|++|++++|..+..-....+...+.. .++|++|+|++|.+... +...+...++|++|+|++|
T Consensus 28 l~~~l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~----~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N 103 (185)
T 1io0_A 28 LKRIQNNDPDLEEVNLNNIMNIPVPTLKACAEALKT----NTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESN 103 (185)
T ss_dssp HHHHHTTCTTCCEEECTTCTTCCHHHHHHHHHHHTT----CCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSS
T ss_pred HHHHHhcCCCCCEEEecCCCCCCHHHHHHHHHHHHh----CCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCC
Confidence 344566778888888888645554333322222322 27788888888876432 3334555677888888886
Q ss_pred CCCccc------CCCCCCCCCcEEEe--cccCCCCC-----CchhhhcCCCCCccEEEEecCC
Q 035579 400 SSLVSF------PEVALPSKLEKIHI--GACDALKS-----LPEAWMCDTNSSLEILYIEGCR 449 (814)
Q Consensus 400 ~~l~~~------~~~~~~~~L~~L~l--~~~~~l~~-----~~~~~~~~~l~~L~~L~l~~~~ 449 (814)
. ++.- ..+...++|++|++ ++|. ++. +...+ ...++|++|++++|.
T Consensus 104 ~-i~~~g~~~l~~~L~~n~~L~~L~L~~~~N~-i~~~g~~~l~~~L--~~n~~L~~L~L~~n~ 162 (185)
T 1io0_A 104 F-ISGSGILALVEALQSNTSLIELRIDNQSQP-LGNNVEMEIANML--EKNTTLLKFGYHFTQ 162 (185)
T ss_dssp C-CCHHHHHHHHHGGGGCSSCCEEECCCCSSC-CCHHHHHHHHHHH--HHCSSCCEEECCCSS
T ss_pred c-CCHHHHHHHHHHHHhCCCceEEEecCCCCC-CCHHHHHHHHHHH--HhCCCcCEEeccCCC
Confidence 4 3331 12344567888888 6666 433 12222 345677788877754
No 158
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=97.04 E-value=0.00022 Score=70.44 Aligned_cols=80 Identities=15% Similarity=0.079 Sum_probs=55.9
Q ss_pred cCCCCcceEeecccCCcc--cccccCCCCCCccEEEecCCCCceecCCCCCCCC--CcceEeeccccccccccc------
Q 035579 539 DNNTSLETIGINFCENLK--ILPSGLHNLRQLREITIQRCGNLVSFPEGGLPCA--KLSELRIFQCERLEALPK------ 608 (814)
Q Consensus 539 ~~l~~L~~L~L~~n~~~~--~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~l~--~L~~L~l~~~~~l~~lp~------ 608 (814)
.++++|+.|+|++|.+.+ .+|..+..+++|+.|+|++| .+..+. .+..+. +|++|++++|+....+|.
T Consensus 167 ~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N-~i~~~~-~l~~l~~l~L~~L~L~~Npl~~~~~~~~~y~~ 244 (267)
T 3rw6_A 167 ENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGN-ELKSER-ELDKIKGLKLEELWLDGNSLCDTFRDQSTYIS 244 (267)
T ss_dssp HHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTS-CCCSGG-GGGGGTTSCCSEEECTTSTTGGGCSSHHHHHH
T ss_pred hhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCC-ccCCch-hhhhcccCCcceEEccCCcCccccCcchhHHH
Confidence 567888888888888877 45566667888999999887 445442 233333 888899998876655542
Q ss_pred -cccCCCCcceEE
Q 035579 609 -GLHNLTSLQELT 620 (814)
Q Consensus 609 -~~~~l~~L~~L~ 620 (814)
.+..+++|+.||
T Consensus 245 ~il~~~P~L~~LD 257 (267)
T 3rw6_A 245 AIRERFPKLLRLD 257 (267)
T ss_dssp HHHHHCTTCCEES
T ss_pred HHHHHCcccCeEC
Confidence 356677777765
No 159
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=97.00 E-value=0.00022 Score=66.84 Aligned_cols=16 Identities=13% Similarity=-0.147 Sum_probs=10.7
Q ss_pred CCceeEEEecCCcchh
Q 035579 634 PTNLHSLDIRGNMEIW 649 (814)
Q Consensus 634 ~~~L~~L~l~~n~~~~ 649 (814)
.++|++|++++|.+..
T Consensus 150 n~~L~~L~L~~n~i~~ 165 (185)
T 1io0_A 150 NTTLLKFGYHFTQQGP 165 (185)
T ss_dssp CSSCCEEECCCSSHHH
T ss_pred CCCcCEEeccCCCCCh
Confidence 3667777777776543
No 160
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=96.97 E-value=0.0005 Score=67.80 Aligned_cols=79 Identities=18% Similarity=0.055 Sum_probs=47.4
Q ss_pred cccccEEEeeccCCcc--ccccccCCCCCcceEeeecCCCCcccCCCCCCC--CCcEEEecccCCCCCCch------hhh
Q 035579 364 SCRLEYLILSCCEGLV--KLPQSSLSLCSLREIGIYKCSSLVSFPEVALPS--KLEKIHIGACDALKSLPE------AWM 433 (814)
Q Consensus 364 ~~~L~~L~L~~~~~~~--~~~~~~~~l~~L~~L~L~~~~~l~~~~~~~~~~--~L~~L~l~~~~~l~~~~~------~~~ 433 (814)
+++|+.|+|++|.+.+ .++..+..+++|+.|+|++| .++.+..+..+. +|+.|++++|.....+|. .++
T Consensus 169 l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N-~i~~~~~l~~l~~l~L~~L~L~~Npl~~~~~~~~~y~~~il 247 (267)
T 3rw6_A 169 IPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGN-ELKSERELDKIKGLKLEELWLDGNSLCDTFRDQSTYISAIR 247 (267)
T ss_dssp CTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTS-CCCSGGGGGGGTTSCCSEEECTTSTTGGGCSSHHHHHHHHH
T ss_pred CCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCC-ccCCchhhhhcccCCcceEEccCCcCccccCcchhHHHHHH
Confidence 3778888888887655 34455567788888888774 444444333333 777777777774333331 111
Q ss_pred cCCCCCccEEE
Q 035579 434 CDTNSSLEILY 444 (814)
Q Consensus 434 ~~~l~~L~~L~ 444 (814)
..+++|+.||
T Consensus 248 -~~~P~L~~LD 257 (267)
T 3rw6_A 248 -ERFPKLLRLD 257 (267)
T ss_dssp -HHCTTCCEES
T ss_pred -HHCcccCeEC
Confidence 4456666654
No 161
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=94.24 E-value=0.061 Score=46.40 Aligned_cols=36 Identities=28% Similarity=0.340 Sum_probs=22.5
Q ss_pred CCCcceEEeccCCCCccccc-ccccCCCCCeEEecCCC
Q 035579 694 PASLTDLEIGRFPNLERLSS-SIVDLQNLTELCLRDCP 730 (814)
Q Consensus 694 ~~~L~~L~l~~~~~l~~l~~-~~~~l~~L~~L~l~~c~ 730 (814)
+++|++|+|++ |.++.||. .+..+++|+.|+|.+++
T Consensus 30 p~~l~~L~Ls~-N~l~~l~~~~f~~l~~L~~L~L~~NP 66 (130)
T 3rfe_A 30 PVDTTELVLTG-NNLTALPPGLLDALPALRTAHLGANP 66 (130)
T ss_dssp CTTCSEEECTT-SCCSSCCTTTGGGCTTCCEEECCSSC
T ss_pred CcCCCEEECCC-CcCCccChhhhhhccccCEEEecCCC
Confidence 45666666666 66666665 44566666666666643
No 162
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=93.66 E-value=0.093 Score=45.26 Aligned_cols=52 Identities=25% Similarity=0.302 Sum_probs=42.7
Q ss_pred eEEeccCCCCc--ccccccccCCCCCeEEecCCCCCCccCCCCC--cCCccEEeecCCch
Q 035579 699 DLEIGRFPNLE--RLSSSIVDLQNLTELCLRDCPKLKYFPEKGL--PSSLLRLSILSCPL 754 (814)
Q Consensus 699 ~L~l~~~~~l~--~l~~~~~~l~~L~~L~l~~c~~l~~lp~~~l--~~~L~~L~i~~c~~ 754 (814)
.++.++ +.++ .+|..+. ++|++|+|++ ++|+.+|...+ +++|++|++.++|.
T Consensus 12 ~v~Cs~-~~L~~~~vP~~lp--~~l~~L~Ls~-N~l~~l~~~~f~~l~~L~~L~L~~NP~ 67 (130)
T 3rfe_A 12 LVDCGR-RGLTWASLPTAFP--VDTTELVLTG-NNLTALPPGLLDALPALRTAHLGANPW 67 (130)
T ss_dssp EEECCS-SCCCTTTSCSCCC--TTCSEEECTT-SCCSSCCTTTGGGCTTCCEEECCSSCC
T ss_pred EEEeCC-CCCccccCCCCCC--cCCCEEECCC-CcCCccChhhhhhccccCEEEecCCCe
Confidence 567777 7888 8886543 5799999999 68999999776 78999999999873
No 163
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=89.96 E-value=0.25 Score=45.75 Aligned_cols=93 Identities=14% Similarity=0.058 Sum_probs=51.2
Q ss_pred hhhhhcCCCCCeEEEecCCCcccchhhHHHHHHHHhhhccccccEEEeeccCCccc----cccccCCCCCcceEeeecCC
Q 035579 325 NELLQDICSLRRLTIRSCPKLQSLVAEEEKDQQQQLCELSCRLEYLILSCCEGLVK----LPQSSLSLCSLREIGIYKCS 400 (814)
Q Consensus 325 ~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~----~~~~~~~l~~L~~L~L~~~~ 400 (814)
...+..-+.|++|+|+++..+..-....+...+.. -+.|+.|+|++|.+... +...+..-+.|++|+|++|.
T Consensus 34 ~~ll~~n~~L~~L~L~~nn~igd~ga~~la~aL~~----N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~ 109 (197)
T 1pgv_A 34 NRLREDDTDLKEVNINNMKRVSKERIRSLIEAACN----SKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNF 109 (197)
T ss_dssp HHHHTTCSSCCEEECTTCCSSCHHHHHHHHHHHTT----CSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSB
T ss_pred HHHHhcCCCccEEECCCCCCCCHHHHHHHHHHHhh----CCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCc
Confidence 34445567788888876544543322222222222 26788888888876432 22334445677888887753
Q ss_pred CCcccC------CCCCCCCCcEEEeccc
Q 035579 401 SLVSFP------EVALPSKLEKIHIGAC 422 (814)
Q Consensus 401 ~l~~~~------~~~~~~~L~~L~l~~~ 422 (814)
++.-. .+..-+.|+.|++++|
T Consensus 110 -Ig~~Ga~ala~aL~~N~tL~~L~L~n~ 136 (197)
T 1pgv_A 110 -LTPELLARLLRSTLVTQSIVEFKADNQ 136 (197)
T ss_dssp -CCHHHHHHHHHHTTTTCCCSEEECCCC
T ss_pred -CCHHHHHHHHHHHhhCCceeEEECCCC
Confidence 33211 1333456777777654
No 164
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=89.56 E-value=0.14 Score=47.40 Aligned_cols=42 Identities=14% Similarity=0.113 Sum_probs=18.4
Q ss_pred hHhhcCCCCcceEeecccCCccc----ccccCCCCCCccEEEecCC
Q 035579 535 AERLDNNTSLETIGINFCENLKI----LPSGLHNLRQLREITIQRC 576 (814)
Q Consensus 535 ~~~~~~l~~L~~L~L~~n~~~~~----~~~~~~~l~~L~~L~l~~~ 576 (814)
...+..-+.|+.|+|++|.+... +...+..-+.|++|+|++|
T Consensus 63 a~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N 108 (197)
T 1pgv_A 63 IEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESN 108 (197)
T ss_dssp HHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSS
T ss_pred HHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCC
Confidence 33344444555555555554421 1222223344555555554
No 165
>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}
Probab=29.64 E-value=64 Score=25.65 Aligned_cols=35 Identities=14% Similarity=0.181 Sum_probs=22.1
Q ss_pred CCCCCcceEEeccCCCCccccc-ccccCCCCCeEEecC
Q 035579 692 PLPASLTDLEIGRFPNLERLSS-SIVDLQNLTELCLRD 728 (814)
Q Consensus 692 ~~~~~L~~L~l~~~~~l~~l~~-~~~~l~~L~~L~l~~ 728 (814)
..+.+|+.+.|-. .++.|.. .+..+.+|+.+.+..
T Consensus 17 ~~c~~L~~i~iP~--~v~~Ig~~aF~~C~~L~~i~~~~ 52 (100)
T 2lz0_A 17 AGNTVIREITVQP--NIGLLYDGMFSGCTALEKLILTG 52 (100)
T ss_dssp TTCTTCCCEEECT--TSSCCCTTSSTTCTTCCCEEECC
T ss_pred cCCCCCcEEEcCC--chheEcHHHHhccCCccEEEEcC
Confidence 5566666666654 4566655 566666777776654
No 166
>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}
Probab=20.39 E-value=1.5e+02 Score=23.40 Aligned_cols=42 Identities=7% Similarity=0.131 Sum_probs=22.2
Q ss_pred Cccccc-ccccCCCCCeEEecCCCCCCccCCCCC--cCCccEEeecC
Q 035579 708 LERLSS-SIVDLQNLTELCLRDCPKLKYFPEKGL--PSSLLRLSILS 751 (814)
Q Consensus 708 l~~l~~-~~~~l~~L~~L~l~~c~~l~~lp~~~l--~~~L~~L~i~~ 751 (814)
++.|.. .+.++++|+.+.|-. .++.|....+ +.+|+.+.+.+
T Consensus 8 vt~I~~~aF~~c~~L~~i~iP~--~v~~Ig~~aF~~C~~L~~i~~~~ 52 (100)
T 2lz0_A 8 VVGMDKSLFAGNTVIREITVQP--NIGLLYDGMFSGCTALEKLILTG 52 (100)
T ss_dssp CCSSCSCTTTTCTTCCCEEECT--TSSCCCTTSSTTCTTCCCEEECC
T ss_pred cCEecHHHhcCCCCCcEEEcCC--chheEcHHHHhccCCccEEEEcC
Confidence 344444 455556666666644 4555555444 55555555544
Done!