BLAST Results

Query Summary

Your job contains 1 sequence.

Parameters
Threshold: 0.001
Maximum number of alignments shown: 100
BLAST filter: on

Query Sequence

>035580
MCACSAASVTIVDGLKAAEPKEKCPLCREAGVYEGAVHLDELNLLLSRSCQEYWEERLKM
ERVARVRQAKEHWESQCRAFMGV

High Scoring Gene Products

Symbol, full name Information P value
NLA
nitrogen limitation adaptation
protein from Arabidopsis thaliana 4.2e-31
AT2G38920 protein from Arabidopsis thaliana 2.5e-19

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Raw Blast Data

BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]

Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.

Reference:  Gish, W. (1996-2006) http://blast.wustl.edu

Query=  035580
        (83 letters)

Database:  go_20130330-seqdb.fasta
           368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done

                                                                     Smallest
                                                                       Sum
                                                              High  Probability
Sequences producing High-scoring Segment Pairs:              Score  P(N)      N

TAIR|locus:2024675 - symbol:NLA "nitrogen limitation adap...   342  4.2e-31   1
TAIR|locus:2064935 - symbol:AT2G38920 species:3702 "Arabi...   231  2.5e-19   1


>TAIR|locus:2024675 [details] [associations]
            symbol:NLA "nitrogen limitation adaptation" species:3702
            "Arabidopsis thaliana" [GO:0005634 "nucleus" evidence=ISM;IDA]
            [GO:0008270 "zinc ion binding" evidence=IEA] [GO:0010167 "response
            to nitrate" evidence=IMP] [GO:0004842 "ubiquitin-protein ligase
            activity" evidence=TAS] [GO:0009626 "plant-type hypersensitive
            response" evidence=IMP] [GO:0009627 "systemic acquired resistance"
            evidence=IMP] [GO:0009697 "salicylic acid biosynthetic process"
            evidence=IMP] [GO:0009751 "response to salicylic acid stimulus"
            evidence=IEP] [GO:0010337 "regulation of salicylic acid metabolic
            process" evidence=IMP] [GO:0042742 "defense response to bacterium"
            evidence=IMP] [GO:0080021 "response to benzoic acid stimulus"
            evidence=IEP;IMP] [GO:0006817 "phosphate ion transport"
            evidence=RCA] [GO:0016036 "cellular response to phosphate
            starvation" evidence=RCA] InterPro:IPR001841 PROSITE:PS50089
            SMART:SM00184 UniPathway:UPA00143 Prosite:PS00518 EMBL:CP002684
            GenomeReviews:CT485782_GR GO:GO:0005634 GO:GO:0046872 GO:GO:0016607
            GO:GO:0042742 GO:GO:0008270 GO:GO:0009627 GO:GO:0009751
            Gene3D:3.30.40.10 InterPro:IPR013083 GO:GO:0009626 GO:GO:0004842
            InterPro:IPR017907 HOGENOM:HOG000240281 KO:K16275
            ProtClustDB:CLSN2687631 InterPro:IPR004331 Pfam:PF03105
            PROSITE:PS51382 EMBL:DQ059096 EMBL:AC009525 EMBL:AK229396
            EMBL:AY088823 EMBL:BT044616 IPI:IPI00533758 IPI:IPI00891550
            PIR:H86158 RefSeq:NP_001117218.1 RefSeq:NP_563667.1
            UniGene:At.22880 UniGene:At.46895 ProteinModelPortal:Q9SRX9
            SMR:Q9SRX9 STRING:Q9SRX9 EnsemblPlants:AT1G02860.1 GeneID:839559
            KEGG:ath:AT1G02860 TAIR:At1g02860 eggNOG:NOG291077
            InParanoid:Q9SRX9 OMA:CYMCACS PhylomeDB:Q9SRX9
            Genevestigator:Q9SRX9 GO:GO:0010337 GO:GO:0080021 GO:GO:0010167
            GO:GO:0009697 Uniprot:Q9SRX9
        Length = 335

 Score = 342 (125.4 bits), Expect = 4.2e-31, P = 4.2e-31
 Identities = 60/83 (72%), Positives = 71/83 (85%)

Query:     1 MCACSAASVTIVDGLKAAEPKEKCPLCREAGVYEGAVHLDELNLLLSRSCQEYWEERLKM 60
             MCACSAASV +VDGLK AE  EKCPLCRE GVY+GAVHLDELN+LL RSC++YWEER K 
Sbjct:   253 MCACSAASVNVVDGLKTAEATEKCPLCREDGVYKGAVHLDELNILLKRSCRDYWEERRKT 312

Query:    61 ERVARVRQAKEHWESQCRAFMGV 83
             ER  R++QAKE+W+ QCR+F G+
Sbjct:   313 ERAERLQQAKEYWDYQCRSFTGI 335


>TAIR|locus:2064935 [details] [associations]
            symbol:AT2G38920 species:3702 "Arabidopsis thaliana"
            [GO:0005634 "nucleus" evidence=ISM] [GO:0008270 "zinc ion binding"
            evidence=IEA] [GO:0006817 "phosphate ion transport" evidence=RCA]
            [GO:0009062 "fatty acid catabolic process" evidence=RCA]
            [GO:0016036 "cellular response to phosphate starvation"
            evidence=RCA] InterPro:IPR001841 PROSITE:PS50089 SMART:SM00184
            UniPathway:UPA00143 Prosite:PS00518 EMBL:CP002685
            GenomeReviews:CT485783_GR GO:GO:0046872 GO:GO:0016874 GO:GO:0008270
            GO:GO:0016567 Gene3D:3.30.40.10 InterPro:IPR013083 EMBL:AC005770
            InterPro:IPR017907 EMBL:AK119158 EMBL:BT006237 IPI:IPI00526484
            PIR:A84811 RefSeq:NP_181426.2 UniGene:At.37231
            ProteinModelPortal:Q8GW10 SMR:Q8GW10 PaxDb:Q8GW10
            EnsemblPlants:AT2G38920.1 GeneID:818477 KEGG:ath:AT2G38920
            TAIR:At2g38920 eggNOG:NOG314482 HOGENOM:HOG000240281
            InParanoid:Q8GW10 KO:K16275 OMA:MNAIAIR PhylomeDB:Q8GW10
            ProtClustDB:CLSN2687631 Genevestigator:Q8GW10 InterPro:IPR004331
            Pfam:PF03105 PROSITE:PS51382 Uniprot:Q8GW10
        Length = 335

 Score = 231 (86.4 bits), Expect = 2.5e-19, P = 2.5e-19
 Identities = 44/81 (54%), Positives = 55/81 (67%)

Query:     2 CACSAASVTIVDGLKAAEPKEKCPLCREAGVYEGAVHLDELNLLLSRSCQEYWEERLKME 61
             CACSAASV I  G+KAA    KCP+CREAGVY  AVH+ EL+LLL    +EYW+ER+  E
Sbjct:   254 CACSAASVLIFQGIKAAPRHSKCPICREAGVYAEAVHMIELHLLLKTRSKEYWKERMMNE 313

Query:    62 RVARVRQAKEHWESQCRAFMG 82
             R   V+Q+K  W  Q +  +G
Sbjct:   314 RSEMVKQSKMFWNEQTKHMIG 334


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.321   0.131   0.414    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0       83        83   0.00091  102 3  11 22  0.40    29
                                                     29  0.44    30


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  2
  No. of states in DFA:  556 (59 KB)
  Total size of DFA:  122 KB (2079 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  10.20u 0.11s 10.31t   Elapsed:  00:00:00
  Total cpu time:  10.20u 0.11s 10.31t   Elapsed:  00:00:00
  Start:  Mon May 20 19:42:06 2013   End:  Mon May 20 19:42:06 2013

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