BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 035580
(83 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q7XI73|BAHL2_ORYSJ Probable E3 ubiquitin-protein ligase BAH1-like 2 OS=Oryza sativa
subsp. japonica GN=Os07g0673200 PE=2 SV=1
Length = 321
Score = 140 bits (353), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 64/83 (77%), Positives = 75/83 (90%)
Query: 1 MCACSAASVTIVDGLKAAEPKEKCPLCREAGVYEGAVHLDELNLLLSRSCQEYWEERLKM 60
+C+CSAASVTIVDGLK+AE K KCPLCR+AGV+ AVHLDELN+LLS SC EYWE+R++M
Sbjct: 239 LCSCSAASVTIVDGLKSAERKSKCPLCRQAGVFPNAVHLDELNMLLSYSCPEYWEKRIQM 298
Query: 61 ERVARVRQAKEHWESQCRAFMGV 83
ERV RVR AKEHWESQCRAF+G+
Sbjct: 299 ERVERVRLAKEHWESQCRAFLGM 321
>sp|B8B5U8|BAHL2_ORYSI Probable E3 ubiquitin-protein ligase BAH1-like 1 OS=Oryza sativa
subsp. indica GN=OsI_27296 PE=3 SV=1
Length = 321
Score = 140 bits (352), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 64/83 (77%), Positives = 75/83 (90%)
Query: 1 MCACSAASVTIVDGLKAAEPKEKCPLCREAGVYEGAVHLDELNLLLSRSCQEYWEERLKM 60
+C+CSAASVTIVDGLK+AE K KCPLCR+AGV+ AVHLDELN+LLS SC EYWE+R++M
Sbjct: 239 LCSCSAASVTIVDGLKSAERKSKCPLCRQAGVFPNAVHLDELNMLLSYSCPEYWEKRIQM 298
Query: 61 ERVARVRQAKEHWESQCRAFMGV 83
ERV RVR AKEHWESQCRAF+G+
Sbjct: 299 ERVERVRLAKEHWESQCRAFLGM 321
>sp|Q9SRX9|BAH1_ARATH E3 ubiquitin-protein ligase BAH1 OS=Arabidopsis thaliana GN=BAH1
PE=1 SV=1
Length = 335
Score = 134 bits (336), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 60/83 (72%), Positives = 71/83 (85%)
Query: 1 MCACSAASVTIVDGLKAAEPKEKCPLCREAGVYEGAVHLDELNLLLSRSCQEYWEERLKM 60
MCACSAASV +VDGLK AE EKCPLCRE GVY+GAVHLDELN+LL RSC++YWEER K
Sbjct: 253 MCACSAASVNVVDGLKTAEATEKCPLCREDGVYKGAVHLDELNILLKRSCRDYWEERRKT 312
Query: 61 ERVARVRQAKEHWESQCRAFMGV 83
ER R++QAKE+W+ QCR+F G+
Sbjct: 313 ERAERLQQAKEYWDYQCRSFTGI 335
>sp|Q7XZZ3|BAHL1_ORYSJ Probable E3 ubiquitin-protein ligase BAH1-like 1 OS=Oryza sativa
subsp. japonica GN=Os03g0650900 PE=2 SV=1
Length = 339
Score = 92.8 bits (229), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 41/82 (50%), Positives = 58/82 (70%)
Query: 2 CACSAASVTIVDGLKAAEPKEKCPLCREAGVYEGAVHLDELNLLLSRSCQEYWEERLKME 61
CAC AASV I G+K+A P+ KCP+CR GV+ AVH+ EL+LL+ ++YW +RL+ E
Sbjct: 258 CACGAASVYIFQGVKSAPPEAKCPVCRSDGVFAHAVHMTELDLLIKTRSKDYWRQRLREE 317
Query: 62 RVARVRQAKEHWESQCRAFMGV 83
R V+Q+KE+W+SQ MG+
Sbjct: 318 RNEMVKQSKEYWDSQAMLSMGI 339
>sp|A2XK56|BAHL1_ORYSI Probable E3 ubiquitin-protein ligase BAH1-like 1 OS=Oryza sativa
subsp. indica GN=OsI_12825 PE=3 SV=1
Length = 339
Score = 92.8 bits (229), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 41/82 (50%), Positives = 58/82 (70%)
Query: 2 CACSAASVTIVDGLKAAEPKEKCPLCREAGVYEGAVHLDELNLLLSRSCQEYWEERLKME 61
CAC AASV I G+K+A P+ KCP+CR GV+ AVH+ EL+LL+ ++YW +RL+ E
Sbjct: 258 CACGAASVYIFQGVKSAPPEAKCPVCRSDGVFAHAVHMTELDLLIKTRSKDYWRQRLREE 317
Query: 62 RVARVRQAKEHWESQCRAFMGV 83
R V+Q+KE+W+SQ MG+
Sbjct: 318 RNEMVKQSKEYWDSQAMLSMGI 339
>sp|Q8GW10|BAH1L_ARATH Probable E3 ubiquitin-protein ligase BAH1-like OS=Arabidopsis
thaliana GN=RF178 PE=2 SV=1
Length = 335
Score = 91.3 bits (225), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 44/81 (54%), Positives = 55/81 (67%)
Query: 2 CACSAASVTIVDGLKAAEPKEKCPLCREAGVYEGAVHLDELNLLLSRSCQEYWEERLKME 61
CACSAASV I G+KAA KCP+CREAGVY AVH+ EL+LLL +EYW+ER+ E
Sbjct: 254 CACSAASVLIFQGIKAAPRHSKCPICREAGVYAEAVHMIELHLLLKTRSKEYWKERMMNE 313
Query: 62 RVARVRQAKEHWESQCRAFMG 82
R V+Q+K W Q + +G
Sbjct: 314 RSEMVKQSKMFWNEQTKHMIG 334
>sp|Q9ZCH6|Y766_RICPR Uncharacterized HTH-type transcriptional regulator RP766
OS=Rickettsia prowazekii (strain Madrid E) GN=RP766
PE=4 SV=1
Length = 92
Score = 29.6 bits (65), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 10/34 (29%), Positives = 23/34 (67%)
Query: 32 VYEGAVHLDELNLLLSRSCQEYWEERLKMERVAR 65
+Y+ ++ + +N+ L+ +E+ EE+LK E++ R
Sbjct: 3 IYKSFIYSEVINMALATKVKEFLEEKLKQEKIDR 36
>sp|Q1L721|RN138_XENLA E3 ubiquitin-protein ligase RNF138 OS=Xenopus laevis GN=rnf138 PE=1
SV=1
Length = 222
Score = 29.3 bits (64), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 21/55 (38%), Positives = 27/55 (49%), Gaps = 10/55 (18%)
Query: 5 SAASVTIVDG---LKAAEPKEKCPLCREAGVYEGAVHLDELNLLLSRSCQEYWEE 56
S +VTI G K EPK KCPLC E L++ +LL + Y+EE
Sbjct: 114 SPKNVTIQTGQNSTKCQEPKYKCPLCSEHN-------LNQRSLLEHCNNVHYYEE 161
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.321 0.131 0.414
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 28,463,608
Number of Sequences: 539616
Number of extensions: 895442
Number of successful extensions: 2435
Number of sequences better than 100.0: 8
Number of HSP's better than 100.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 2428
Number of HSP's gapped (non-prelim): 8
length of query: 83
length of database: 191,569,459
effective HSP length: 54
effective length of query: 29
effective length of database: 162,430,195
effective search space: 4710475655
effective search space used: 4710475655
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 55 (25.8 bits)