Query 035580
Match_columns 83
No_of_seqs 27 out of 29
Neff 2.5
Searched_HMMs 29240
Date Mon Mar 25 06:32:14 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/035580.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/035580hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2ckl_A Polycomb group ring fin 85.7 0.63 2.1E-05 28.5 2.8 51 22-76 51-101 (108)
2 3l11_A E3 ubiquitin-protein li 82.5 0.92 3.2E-05 27.9 2.6 40 21-60 50-96 (115)
3 2vje_B MDM4 protein; proto-onc 76.5 0.78 2.7E-05 26.3 0.8 10 21-30 44-53 (63)
4 2vje_A E3 ubiquitin-protein li 75.1 0.97 3.3E-05 25.9 0.9 10 21-30 45-54 (64)
5 4ayc_A E3 ubiquitin-protein li 72.7 6.1 0.00021 25.2 4.4 40 20-59 86-127 (138)
6 2ysl_A Tripartite motif-contai 72.2 1.6 5.3E-05 24.4 1.3 13 19-31 55-67 (73)
7 1iym_A EL5; ring-H2 finger, ub 68.7 1.9 6.3E-05 22.9 1.1 10 21-30 43-52 (55)
8 2ea6_A Ring finger protein 4; 64.9 2.1 7.1E-05 23.4 0.8 10 21-30 56-65 (69)
9 2jvx_A NF-kappa-B essential mo 63.3 1.6 5.4E-05 23.3 0.1 11 19-29 1-11 (28)
10 2xeu_A Ring finger protein 4; 63.1 2.3 7.7E-05 22.9 0.7 11 21-31 44-54 (64)
11 2ea5_A Cell growth regulator w 63.0 2.1 7.1E-05 25.0 0.6 9 22-30 47-55 (68)
12 2ecm_A Ring finger and CHY zin 61.7 2.5 8.4E-05 22.3 0.7 9 22-30 44-52 (55)
13 2ecy_A TNF receptor-associated 61.5 3.1 0.00011 23.1 1.1 12 20-31 49-60 (66)
14 2ecg_A Baculoviral IAP repeat- 61.4 2.2 7.6E-05 24.7 0.5 9 22-30 57-65 (75)
15 2ect_A Ring finger protein 126 61.4 3 0.0001 23.7 1.1 11 21-31 52-62 (78)
16 2egp_A Tripartite motif-contai 61.4 3.4 0.00012 23.2 1.3 12 20-31 52-63 (79)
17 2yur_A Retinoblastoma-binding 61.1 3.5 0.00012 23.6 1.3 15 21-35 52-66 (74)
18 1x4j_A Ring finger protein 38; 60.9 2.7 9.2E-05 23.9 0.8 9 22-30 61-69 (75)
19 1chc_A Equine herpes virus-1 r 58.9 3.2 0.00011 22.9 0.9 10 21-30 40-49 (68)
20 1jm7_A BRCA1, breast cancer ty 58.6 2.8 9.7E-05 25.1 0.7 16 20-35 57-72 (112)
21 4ic3_A E3 ubiquitin-protein li 58.1 2.9 9.8E-05 24.3 0.6 10 22-31 56-65 (74)
22 1g25_A CDK-activating kinase a 58.0 3.7 0.00013 22.6 1.1 11 21-31 43-53 (65)
23 3ng2_A RNF4, snurf, ring finge 57.9 2.8 9.6E-05 23.1 0.5 11 22-32 52-62 (71)
24 3ztg_A E3 ubiquitin-protein li 57.8 7.1 0.00024 22.7 2.3 14 21-34 50-63 (92)
25 3fl2_A E3 ubiquitin-protein li 57.3 2.1 7.3E-05 26.6 -0.1 14 20-33 86-99 (124)
26 2djb_A Polycomb group ring fin 56.6 3.5 0.00012 23.3 0.8 12 21-32 50-61 (72)
27 2kiz_A E3 ubiquitin-protein li 56.5 3.4 0.00012 22.9 0.7 9 22-30 52-60 (69)
28 2ecl_A Ring-box protein 2; RNF 56.5 3.9 0.00013 24.1 1.0 13 21-33 64-76 (81)
29 1wim_A KIAA0161 protein; ring 56.4 7.8 0.00027 23.0 2.4 33 21-57 50-84 (94)
30 2csy_A Zinc finger protein 183 55.2 5 0.00017 23.0 1.3 11 21-31 49-59 (81)
31 1v87_A Deltex protein 2; ring- 55.1 4.4 0.00015 24.6 1.1 11 20-30 81-91 (114)
32 2yho_A E3 ubiquitin-protein li 52.9 3.7 0.00013 24.5 0.5 8 23-30 51-58 (79)
33 2d8t_A Dactylidin, ring finger 52.4 3.9 0.00013 23.0 0.5 9 22-30 50-58 (71)
34 1bor_A Transcription factor PM 52.1 4.7 0.00016 22.1 0.8 13 20-32 36-48 (56)
35 1e4u_A Transcriptional repress 51.2 4.6 0.00016 24.3 0.7 11 20-30 49-59 (78)
36 1t1h_A Gspef-atpub14, armadill 50.8 8.3 0.00028 21.7 1.8 15 21-35 43-57 (78)
37 1z6u_A NP95-like ring finger p 50.8 2.5 8.7E-05 27.9 -0.5 14 21-34 113-126 (150)
38 1jm7_B BARD1, BRCA1-associated 50.5 8.5 0.00029 23.7 1.9 15 22-36 56-70 (117)
39 2ysj_A Tripartite motif-contai 50.4 7.6 0.00026 21.1 1.5 23 15-39 14-36 (63)
40 3lrq_A E3 ubiquitin-protein li 47.8 7 0.00024 23.7 1.2 16 22-37 59-74 (100)
41 2y43_A E3 ubiquitin-protein li 46.5 12 0.0004 22.2 2.0 12 21-32 57-68 (99)
42 1x9b_A Hypothetical membrane p 45.4 24 0.00084 21.5 3.3 28 38-74 24-51 (53)
43 2l0b_A E3 ubiquitin-protein li 45.4 7.4 0.00025 23.2 1.0 10 21-30 77-86 (91)
44 1l8d_A DNA double-strand break 43.6 50 0.0017 20.2 4.7 10 21-30 47-56 (112)
45 2ct0_A Non-SMC element 1 homol 42.7 8.4 0.00029 23.5 1.0 14 20-33 51-64 (74)
46 2ecv_A Tripartite motif-contai 42.5 12 0.00041 20.8 1.5 22 15-38 13-34 (85)
47 2ecw_A Tripartite motif-contai 41.7 12 0.00042 20.8 1.5 20 16-37 14-33 (85)
48 2ecn_A Ring finger protein 141 41.1 12 0.00041 20.6 1.4 19 12-30 6-24 (70)
49 2kr4_A Ubiquitin conjugation f 40.8 14 0.00047 22.0 1.7 29 21-53 48-76 (85)
50 3dpl_R Ring-box protein 1; ubi 38.5 8.1 0.00028 24.5 0.4 14 21-34 89-102 (106)
51 4ap4_A E3 ubiquitin ligase RNF 38.4 11 0.00037 22.6 0.9 12 21-32 48-59 (133)
52 2ckl_B Ubiquitin ligase protei 38.0 9.7 0.00033 24.7 0.8 11 21-31 90-100 (165)
53 1wgm_A Ubiquitin conjugation f 38.0 22 0.00076 21.9 2.4 23 21-43 57-79 (98)
54 2vpb_A Hpygo1, pygopus homolog 35.0 11 0.00038 22.3 0.6 15 16-30 3-17 (65)
55 2d8s_A Cellular modulator of i 33.8 12 0.00043 22.5 0.7 14 21-34 58-71 (80)
56 2k5c_A Uncharacterized protein 32.8 8 0.00027 26.0 -0.3 12 20-31 7-18 (95)
57 1lko_A Rubrerythrin all-iron(I 32.6 13 0.00043 25.6 0.7 20 10-32 163-182 (191)
58 1rmd_A RAG1; V(D)J recombinati 32.4 14 0.00046 22.5 0.7 15 21-35 58-72 (116)
59 3hct_A TNF receptor-associated 32.0 20 0.00069 22.0 1.5 10 23-32 55-64 (118)
60 3vpi_A Type VI secretion expor 31.3 9.1 0.00031 28.1 -0.2 27 30-56 12-38 (174)
61 2ksn_A Ubiquitin domain-contai 30.6 17 0.00057 25.7 1.0 17 25-41 19-35 (137)
62 2ecj_A Tripartite motif-contai 30.2 23 0.00077 18.5 1.3 22 15-38 9-30 (58)
63 3t6p_A Baculoviral IAP repeat- 29.5 18 0.00063 27.4 1.2 9 22-30 327-335 (345)
64 2ct2_A Tripartite motif protei 29.0 23 0.0008 19.9 1.3 16 15-30 9-24 (88)
65 2ep4_A Ring finger protein 24; 28.3 27 0.00092 19.3 1.5 17 14-30 8-24 (74)
66 3o9x_A Uncharacterized HTH-typ 28.3 18 0.0006 22.3 0.7 10 21-30 2-11 (133)
67 3knv_A TNF receptor-associated 28.0 7.7 0.00026 25.4 -1.0 13 21-33 66-78 (141)
68 1o20_A Gamma-glutamyl phosphat 27.4 44 0.0015 25.2 2.9 40 36-75 10-51 (427)
69 4efa_G V-type proton ATPase su 27.1 37 0.0013 22.6 2.2 12 60-71 31-42 (119)
70 2lri_C Autoimmune regulator; Z 26.8 29 0.001 20.5 1.5 20 12-31 3-22 (66)
71 2kre_A Ubiquitin conjugation f 26.2 35 0.0012 21.1 1.8 22 21-42 63-84 (100)
72 4a0k_B E3 ubiquitin-protein li 25.2 15 0.00052 24.0 0.0 14 21-34 100-113 (117)
73 3pwf_A Rubrerythrin; non heme 24.3 25 0.00085 24.1 1.0 13 19-32 152-164 (170)
74 3vhs_A ATPase wrnip1; zinc fin 23.9 17 0.00058 19.8 0.1 9 22-30 7-15 (29)
75 3ga8_A HTH-type transcriptiona 23.8 21 0.00073 21.1 0.5 10 21-30 2-11 (78)
76 2lqt_A Coiled-coil-helix-coile 23.3 49 0.0017 21.5 2.2 16 47-62 44-59 (85)
77 3kup_A Chromobox protein homol 23.2 31 0.0011 20.5 1.2 25 34-58 40-64 (65)
78 4ayb_P DNA-directed RNA polyme 22.6 27 0.00094 20.8 0.8 12 19-30 21-32 (48)
79 1yuz_A Nigerythrin; rubrythrin 22.2 28 0.00095 24.4 0.9 18 10-31 179-196 (202)
80 1vyx_A ORF K3, K3RING; zinc-bi 21.5 29 0.00098 19.9 0.7 10 21-30 47-56 (60)
81 2y1n_A E3 ubiquitin-protein li 21.3 28 0.00095 27.4 0.8 13 20-32 366-378 (389)
82 3mjh_B Early endosome antigen 21.2 25 0.00084 19.2 0.4 7 23-29 7-13 (34)
83 3hcs_A TNF receptor-associated 21.2 41 0.0014 21.7 1.5 11 23-33 55-65 (170)
No 1
>2ckl_A Polycomb group ring finger protein 4; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_B 2h0d_A
Probab=85.69 E-value=0.63 Score=28.47 Aligned_cols=51 Identities=10% Similarity=0.171 Sum_probs=25.1
Q ss_pred CCCcccccccccCcchhhHHHhHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 035580 22 EKCPLCREAGVYEGAVHLDELNLLLSRSCQEYWEERLKMERVARVRQAKEHWESQ 76 (83)
Q Consensus 22 ~KCPlCRe~gVy~~AVhl~EL~lLlk~rc~eYW~eRl~~ER~e~vkq~KE~wd~Q 76 (83)
..||+||+.-...+-++-..-|..|.+--..++.. ++ .+..++-++||++.
T Consensus 51 ~~CP~Cr~~~~~~~~~~~l~~n~~l~~~i~~~~~~-~~---~~e~~~~~~~~~~~ 101 (108)
T 2ckl_A 51 KYCPICDVQVHKTRPLLNIRSDKTLQDIVYKLVPG-LF---KNEMKRRRDFYAAH 101 (108)
T ss_dssp SBCTTTCCBSCSSCGGGGEEECHHHHHHHHHHSTT-HH---HHHHHHHHHHHHHS
T ss_pred CcCcCCCccccccCcccccCcCHHHHHHHHHHhhh-HH---HHHHHhHHHHHHhC
Confidence 78999999855443222222233333322233322 22 22345567888753
No 2
>3l11_A E3 ubiquitin-protein ligase RNF168; E3 ligase, ring domain, DNA damage, chromatin regulator, CHR protein, DNA repair, metal-binding, nucleus; 2.12A {Homo sapiens}
Probab=82.46 E-value=0.92 Score=27.90 Aligned_cols=40 Identities=18% Similarity=0.224 Sum_probs=24.9
Q ss_pred CCCCccccccccc-------CcchhhHHHhHHHhhhhHHHHHHHHHH
Q 035580 21 KEKCPLCREAGVY-------EGAVHLDELNLLLSRSCQEYWEERLKM 60 (83)
Q Consensus 21 ~~KCPlCRe~gVy-------~~AVhl~EL~lLlk~rc~eYW~eRl~~ 60 (83)
...||+||+.-.. .+...-.+|.-+|++--++..++|...
T Consensus 50 ~~~CP~Cr~~~~~~~~~~~~~~~~~n~~l~~~i~~~~p~~~~~r~~~ 96 (115)
T 3l11_A 50 SLCCPFCRRRVSSWTRYHTRRNSLVNVELWTIIQKHYPRECKLRASG 96 (115)
T ss_dssp TSBCTTTCCBCHHHHHHHHHTTCCBCHHHHHHHHHHSHHHHHHHHHC
T ss_pred cCCCCCCCcccCccccccccccchhhHHHHHHHHHHCCHHHHHHHhh
Confidence 4689999997543 222223566666766666666655543
No 3
>2vje_B MDM4 protein; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_B*
Probab=76.52 E-value=0.78 Score=26.27 Aligned_cols=10 Identities=30% Similarity=1.208 Sum_probs=8.5
Q ss_pred CCCCcccccc
Q 035580 21 KEKCPLCREA 30 (83)
Q Consensus 21 ~~KCPlCRe~ 30 (83)
..+||+||+.
T Consensus 44 ~~~CPiCR~~ 53 (63)
T 2vje_B 44 GASCPICKKE 53 (63)
T ss_dssp TCBCTTTCCB
T ss_pred CCcCCCcCch
Confidence 3699999986
No 4
>2vje_A E3 ubiquitin-protein ligase MDM2; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_A* 2hdp_A
Probab=75.06 E-value=0.97 Score=25.92 Aligned_cols=10 Identities=40% Similarity=1.348 Sum_probs=8.4
Q ss_pred CCCCcccccc
Q 035580 21 KEKCPLCREA 30 (83)
Q Consensus 21 ~~KCPlCRe~ 30 (83)
..+||+||+.
T Consensus 45 ~~~CPiCR~~ 54 (64)
T 2vje_A 45 NKPCPVCRQP 54 (64)
T ss_dssp TCCCTTTCCC
T ss_pred CCcCCCcCcc
Confidence 4689999986
No 5
>4ayc_A E3 ubiquitin-protein ligase RNF8; DNA damage, K63 chains; HET: CPQ; 1.90A {Homo sapiens} PDB: 4epo_C
Probab=72.68 E-value=6.1 Score=25.18 Aligned_cols=40 Identities=25% Similarity=0.409 Sum_probs=19.6
Q ss_pred CCCCCccccccccc-Ccchhh-HHHhHHHhhhhHHHHHHHHH
Q 035580 20 PKEKCPLCREAGVY-EGAVHL-DELNLLLSRSCQEYWEERLK 59 (83)
Q Consensus 20 ~~~KCPlCRe~gVy-~~AVhl-~EL~lLlk~rc~eYW~eRl~ 59 (83)
....||+||+.--- .....+ .-++-|+..-..++-+.|..
T Consensus 86 ~~~~CP~Cr~~~~~~~~~~~~~~~i~~~~~~l~~~~~~rr~~ 127 (138)
T 4ayc_A 86 RKIECPICRKDIKSKTYSLVLDNCINKMVNNLSSEVKERRIV 127 (138)
T ss_dssp TCSBCTTTCCBCCCEEECHHHHHHHHHHHTTSCHHHHHHHHH
T ss_pred cCCcCCCCCCcCCCCCCccchhHHHHHHHHHhhHHHHHHHHH
Confidence 35689999986321 111222 22344555544555444433
No 6
>2ysl_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=72.23 E-value=1.6 Score=24.43 Aligned_cols=13 Identities=38% Similarity=0.677 Sum_probs=9.6
Q ss_pred CCCCCCccccccc
Q 035580 19 EPKEKCPLCREAG 31 (83)
Q Consensus 19 ~~~~KCPlCRe~g 31 (83)
....+||+||+.-
T Consensus 55 ~~~~~CP~Cr~~~ 67 (73)
T 2ysl_A 55 CGFFKCPLCKTSV 67 (73)
T ss_dssp CSCCCCSSSCCCC
T ss_pred CCCCCCCCCCCcC
Confidence 4566899999864
No 7
>1iym_A EL5; ring-H2 finger, ubiquitin ligase, DNA binding protein; NMR {Oryza sativa} SCOP: g.44.1.1
Probab=68.74 E-value=1.9 Score=22.92 Aligned_cols=10 Identities=50% Similarity=1.265 Sum_probs=8.1
Q ss_pred CCCCcccccc
Q 035580 21 KEKCPLCREA 30 (83)
Q Consensus 21 ~~KCPlCRe~ 30 (83)
...||+||..
T Consensus 43 ~~~CP~Cr~~ 52 (55)
T 1iym_A 43 HSTCPLCRLT 52 (55)
T ss_dssp CCSCSSSCCC
T ss_pred CCcCcCCCCE
Confidence 5689999975
No 8
>2ea6_A Ring finger protein 4; RNF4, RES4-26, ring domain, zinc- binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=64.91 E-value=2.1 Score=23.37 Aligned_cols=10 Identities=40% Similarity=1.178 Sum_probs=8.1
Q ss_pred CCCCcccccc
Q 035580 21 KEKCPLCREA 30 (83)
Q Consensus 21 ~~KCPlCRe~ 30 (83)
...||+||+.
T Consensus 56 ~~~CP~Cr~~ 65 (69)
T 2ea6_A 56 ANTCPTCRKK 65 (69)
T ss_dssp CSSCTTTCCC
T ss_pred CCCCCCCCCc
Confidence 4589999975
No 9
>2jvx_A NF-kappa-B essential modulator; CCHC classical zinc finger, NEMO zinc finger, beta-BETA- alpha fold, coiled coil, cytoplasm, disease mutation; NMR {Synthetic} PDB: 2jvy_A
Probab=63.33 E-value=1.6 Score=23.32 Aligned_cols=11 Identities=27% Similarity=0.658 Sum_probs=9.0
Q ss_pred CCCCCCccccc
Q 035580 19 EPKEKCPLCRE 29 (83)
Q Consensus 19 ~~~~KCPlCRe 29 (83)
+++.+||+|+.
T Consensus 1 ~~k~~CpvCk~ 11 (28)
T 2jvx_A 1 SSDFCCPKCQY 11 (28)
T ss_dssp CCCEECTTSSC
T ss_pred CCcccCccccc
Confidence 46789999986
No 10
>2xeu_A Ring finger protein 4; transcription, zinc-finger, metal-binding; HET: SUC; 1.50A {Homo sapiens}
Probab=63.11 E-value=2.3 Score=22.88 Aligned_cols=11 Identities=36% Similarity=0.936 Sum_probs=8.8
Q ss_pred CCCCccccccc
Q 035580 21 KEKCPLCREAG 31 (83)
Q Consensus 21 ~~KCPlCRe~g 31 (83)
...||+||+.=
T Consensus 44 ~~~CP~Cr~~~ 54 (64)
T 2xeu_A 44 ANTCPTCRKKI 54 (64)
T ss_dssp CSBCTTTCCBC
T ss_pred CCCCCCCCccC
Confidence 45899999863
No 11
>2ea5_A Cell growth regulator with ring finger domain protein 1; CGRRF1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=63.04 E-value=2.1 Score=25.00 Aligned_cols=9 Identities=44% Similarity=1.505 Sum_probs=7.8
Q ss_pred CCCcccccc
Q 035580 22 EKCPLCREA 30 (83)
Q Consensus 22 ~KCPlCRe~ 30 (83)
.+||+||+.
T Consensus 47 ~~CP~CR~~ 55 (68)
T 2ea5_A 47 QQCPMCRQF 55 (68)
T ss_dssp SSCTTTCCC
T ss_pred CCCCCCCcc
Confidence 689999985
No 12
>2ecm_A Ring finger and CHY zinc finger domain- containing protein 1; RCHY1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2jrj_A
Probab=61.67 E-value=2.5 Score=22.33 Aligned_cols=9 Identities=44% Similarity=1.254 Sum_probs=7.3
Q ss_pred CCCcccccc
Q 035580 22 EKCPLCREA 30 (83)
Q Consensus 22 ~KCPlCRe~ 30 (83)
..||+||+.
T Consensus 44 ~~CP~Cr~~ 52 (55)
T 2ecm_A 44 YRCPLCSGP 52 (55)
T ss_dssp CCCTTSCCS
T ss_pred CcCCCCCCc
Confidence 679999864
No 13
>2ecy_A TNF receptor-associated factor 3; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=61.52 E-value=3.1 Score=23.07 Aligned_cols=12 Identities=33% Similarity=0.744 Sum_probs=9.0
Q ss_pred CCCCCccccccc
Q 035580 20 PKEKCPLCREAG 31 (83)
Q Consensus 20 ~~~KCPlCRe~g 31 (83)
...+||+||+.-
T Consensus 49 ~~~~CP~Cr~~~ 60 (66)
T 2ecy_A 49 SSPKCTACQESI 60 (66)
T ss_dssp SSCCCTTTCCCC
T ss_pred CcCCCCCCCcCC
Confidence 456899999863
No 14
>2ecg_A Baculoviral IAP repeat-containing protein 4; BIRC4, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=61.39 E-value=2.2 Score=24.67 Aligned_cols=9 Identities=44% Similarity=1.387 Sum_probs=7.8
Q ss_pred CCCcccccc
Q 035580 22 EKCPLCREA 30 (83)
Q Consensus 22 ~KCPlCRe~ 30 (83)
.+||+||+.
T Consensus 57 ~~CP~Cr~~ 65 (75)
T 2ecg_A 57 DKCPMCYTV 65 (75)
T ss_dssp SBCTTTCCB
T ss_pred CCCccCCce
Confidence 689999986
No 15
>2ect_A Ring finger protein 126; metal binding protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=61.38 E-value=3 Score=23.66 Aligned_cols=11 Identities=36% Similarity=1.162 Sum_probs=8.5
Q ss_pred CCCCccccccc
Q 035580 21 KEKCPLCREAG 31 (83)
Q Consensus 21 ~~KCPlCRe~g 31 (83)
...||+||+.=
T Consensus 52 ~~~CP~Cr~~~ 62 (78)
T 2ect_A 52 HDSCPVCRKSL 62 (78)
T ss_dssp TCSCTTTCCCC
T ss_pred CCcCcCcCCcc
Confidence 35899999863
No 16
>2egp_A Tripartite motif-containing protein 34; ZF-C3HC4 domain, tripartite motif protein 34, interferon- responsive finger protein 1; NMR {Homo sapiens}
Probab=61.35 E-value=3.4 Score=23.24 Aligned_cols=12 Identities=33% Similarity=0.769 Sum_probs=9.8
Q ss_pred CCCCCccccccc
Q 035580 20 PKEKCPLCREAG 31 (83)
Q Consensus 20 ~~~KCPlCRe~g 31 (83)
...+||+||+.-
T Consensus 52 ~~~~CP~Cr~~~ 63 (79)
T 2egp_A 52 GKSSCPVCGISY 63 (79)
T ss_dssp CCCCCSSSCCCC
T ss_pred CCCcCCCCCCcC
Confidence 467999999874
No 17
>2yur_A Retinoblastoma-binding protein 6; P53-associated cellular protein of testis, proliferation potential-related protein, protein P2P-R; NMR {Homo sapiens}
Probab=61.09 E-value=3.5 Score=23.57 Aligned_cols=15 Identities=27% Similarity=0.760 Sum_probs=10.5
Q ss_pred CCCCcccccccccCc
Q 035580 21 KEKCPLCREAGVYEG 35 (83)
Q Consensus 21 ~~KCPlCRe~gVy~~ 35 (83)
...||+||+.-+..+
T Consensus 52 ~~~CP~Cr~~~~~~~ 66 (74)
T 2yur_A 52 EHTCPTCHQNDVSPD 66 (74)
T ss_dssp SSCCSSSCCSSCCTT
T ss_pred CCcCCCCCCcCCCcc
Confidence 468999999654443
No 18
>1x4j_A Ring finger protein 38; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=60.92 E-value=2.7 Score=23.88 Aligned_cols=9 Identities=44% Similarity=1.416 Sum_probs=6.4
Q ss_pred CCCcccccc
Q 035580 22 EKCPLCREA 30 (83)
Q Consensus 22 ~KCPlCRe~ 30 (83)
..||+||+.
T Consensus 61 ~~CP~Cr~~ 69 (75)
T 1x4j_A 61 RTCPICRAD 69 (75)
T ss_dssp SSCTTTCCC
T ss_pred CcCcCcCCc
Confidence 468888864
No 19
>1chc_A Equine herpes virus-1 ring domain; viral protein; NMR {Equid herpesvirus 1} SCOP: g.44.1.1
Probab=58.91 E-value=3.2 Score=22.88 Aligned_cols=10 Identities=40% Similarity=1.202 Sum_probs=8.1
Q ss_pred CCCCcccccc
Q 035580 21 KEKCPLCREA 30 (83)
Q Consensus 21 ~~KCPlCRe~ 30 (83)
...||+||..
T Consensus 40 ~~~CP~Cr~~ 49 (68)
T 1chc_A 40 NPTCPLCKVP 49 (68)
T ss_dssp SCSTTTTCCC
T ss_pred cCcCcCCChh
Confidence 3689999976
No 20
>1jm7_A BRCA1, breast cancer type 1 susceptibility protein; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=58.55 E-value=2.8 Score=25.07 Aligned_cols=16 Identities=25% Similarity=0.659 Sum_probs=11.1
Q ss_pred CCCCCcccccccccCc
Q 035580 20 PKEKCPLCREAGVYEG 35 (83)
Q Consensus 20 ~~~KCPlCRe~gVy~~ 35 (83)
...+||+||+.--..+
T Consensus 57 ~~~~CP~Cr~~~~~~~ 72 (112)
T 1jm7_A 57 GPSQCPLCKNDITKRS 72 (112)
T ss_dssp SSCCCTTTSCCCCTTT
T ss_pred CCCCCcCCCCcCCHhh
Confidence 3468999999754433
No 21
>4ic3_A E3 ubiquitin-protein ligase XIAP; ring domain, zinc-finger, E3 ligase; 1.78A {Homo sapiens} PDB: 4ic2_A
Probab=58.12 E-value=2.9 Score=24.28 Aligned_cols=10 Identities=40% Similarity=1.099 Sum_probs=8.3
Q ss_pred CCCccccccc
Q 035580 22 EKCPLCREAG 31 (83)
Q Consensus 22 ~KCPlCRe~g 31 (83)
.+||+||+.-
T Consensus 56 ~~CP~Cr~~i 65 (74)
T 4ic3_A 56 DKCPMCYTVI 65 (74)
T ss_dssp SBCTTTCCBC
T ss_pred ccCCCcCcCc
Confidence 7899999863
No 22
>1g25_A CDK-activating kinase assembly factor MAT1; ring finger (C3HC4), metal binding protein; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=58.04 E-value=3.7 Score=22.65 Aligned_cols=11 Identities=27% Similarity=0.673 Sum_probs=8.7
Q ss_pred CCCCccccccc
Q 035580 21 KEKCPLCREAG 31 (83)
Q Consensus 21 ~~KCPlCRe~g 31 (83)
..+||+||+.=
T Consensus 43 ~~~CP~Cr~~~ 53 (65)
T 1g25_A 43 AGNCPECGTPL 53 (65)
T ss_dssp SSSCTTTCCCC
T ss_pred CCcCCCCCCcc
Confidence 46899999863
No 23
>3ng2_A RNF4, snurf, ring finger protein 4; ring domain, E3 ligase, ubiquitylation, sumoylation, zinc-FI metal binding protein; 1.80A {Rattus norvegicus}
Probab=57.90 E-value=2.8 Score=23.13 Aligned_cols=11 Identities=36% Similarity=0.881 Sum_probs=8.8
Q ss_pred CCCcccccccc
Q 035580 22 EKCPLCREAGV 32 (83)
Q Consensus 22 ~KCPlCRe~gV 32 (83)
..||+||+.-.
T Consensus 52 ~~CP~Cr~~~~ 62 (71)
T 3ng2_A 52 NTCPTCRKKIN 62 (71)
T ss_dssp SBCTTTCCBCC
T ss_pred CCCCCCCCccC
Confidence 58999998743
No 24
>3ztg_A E3 ubiquitin-protein ligase RBBP6; PACT, U-BOX, mRNA processing, mRNA splicing; NMR {Homo sapiens}
Probab=57.78 E-value=7.1 Score=22.71 Aligned_cols=14 Identities=29% Similarity=0.812 Sum_probs=10.6
Q ss_pred CCCCcccccccccC
Q 035580 21 KEKCPLCREAGVYE 34 (83)
Q Consensus 21 ~~KCPlCRe~gVy~ 34 (83)
...||+||+.-+..
T Consensus 50 ~~~CP~Cr~~~~~~ 63 (92)
T 3ztg_A 50 EHTCPTCHQNDVSP 63 (92)
T ss_dssp TCCCTTTCCSSCCT
T ss_pred CCcCcCCCCcCCCc
Confidence 46899999986433
No 25
>3fl2_A E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA damage, DNA repair, ring finger domain, metal binding, DNA replication; 1.75A {Homo sapiens}
Probab=57.25 E-value=2.1 Score=26.62 Aligned_cols=14 Identities=29% Similarity=0.380 Sum_probs=9.9
Q ss_pred CCCCCccccccccc
Q 035580 20 PKEKCPLCREAGVY 33 (83)
Q Consensus 20 ~~~KCPlCRe~gVy 33 (83)
....||+||+.---
T Consensus 86 ~~~~CP~Cr~~~~~ 99 (124)
T 3fl2_A 86 QVFSCPACRYDLGR 99 (124)
T ss_dssp TCCBCTTTCCBCCT
T ss_pred CcCCCCCCCccCCC
Confidence 34589999987543
No 26
>2djb_A Polycomb group ring finger protein 6; PCGF6, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=56.60 E-value=3.5 Score=23.27 Aligned_cols=12 Identities=25% Similarity=0.684 Sum_probs=8.5
Q ss_pred CCCCcccccccc
Q 035580 21 KEKCPLCREAGV 32 (83)
Q Consensus 21 ~~KCPlCRe~gV 32 (83)
..+||+||+.--
T Consensus 50 ~~~CP~Cr~~~~ 61 (72)
T 2djb_A 50 SNRCPKCNIVVH 61 (72)
T ss_dssp CSSCTTTCCCCC
T ss_pred CCcCCCcCcccC
Confidence 467888887643
No 27
>2kiz_A E3 ubiquitin-protein ligase arkadia; ring-H2 finger, E3 ligase, Zn binding domain, metal zinc, zinc-finger, metal binding protein; NMR {Homo sapiens}
Probab=56.53 E-value=3.4 Score=22.91 Aligned_cols=9 Identities=56% Similarity=1.490 Sum_probs=6.9
Q ss_pred CCCcccccc
Q 035580 22 EKCPLCREA 30 (83)
Q Consensus 22 ~KCPlCRe~ 30 (83)
..||+||..
T Consensus 52 ~~CP~Cr~~ 60 (69)
T 2kiz_A 52 KKCPICRVD 60 (69)
T ss_dssp SBCTTTCSB
T ss_pred CCCcCcCcc
Confidence 469999875
No 28
>2ecl_A Ring-box protein 2; RNF7, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=56.51 E-value=3.9 Score=24.09 Aligned_cols=13 Identities=38% Similarity=1.030 Sum_probs=9.6
Q ss_pred CCCCccccccccc
Q 035580 21 KEKCPLCREAGVY 33 (83)
Q Consensus 21 ~~KCPlCRe~gVy 33 (83)
...||+||+.=.+
T Consensus 64 ~~~CP~CR~~~~~ 76 (81)
T 2ecl_A 64 NNRCPLCQQDWVV 76 (81)
T ss_dssp CCBCTTTCCBCCE
T ss_pred CCCCCCcCCCcch
Confidence 3589999987443
No 29
>1wim_A KIAA0161 protein; ring finger domain, UBCM4-interacting protein 4, UIP4, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=56.39 E-value=7.8 Score=23.02 Aligned_cols=33 Identities=15% Similarity=0.457 Sum_probs=22.8
Q ss_pred CCCCcc--cccccccCcchhhHHHhHHHhhhhHHHHHHH
Q 035580 21 KEKCPL--CREAGVYEGAVHLDELNLLLSRSCQEYWEER 57 (83)
Q Consensus 21 ~~KCPl--CRe~gVy~~AVhl~EL~lLlk~rc~eYW~eR 57 (83)
.-+||. |++.+ .+...++..||...-.+-|++.
T Consensus 50 ~i~CP~~~C~~~~----~~~~~~i~~ll~~~~~~ky~~~ 84 (94)
T 1wim_A 50 AISCPDAACPKQG----HLQENEIECMVAAEIMQRYKKL 84 (94)
T ss_dssp CEECSCTTCSSCC----EECHHHHHHHSCHHHHHHHHHH
T ss_pred cccCccccCCCCC----ccCHHHHHHHCCHHHHHHHHHH
Confidence 458999 99876 3667777777765555555543
No 30
>2csy_A Zinc finger protein 183-like 1; ring finger protein 161, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=55.24 E-value=5 Score=23.01 Aligned_cols=11 Identities=18% Similarity=0.776 Sum_probs=8.7
Q ss_pred CCCCccccccc
Q 035580 21 KEKCPLCREAG 31 (83)
Q Consensus 21 ~~KCPlCRe~g 31 (83)
...||+||+.-
T Consensus 49 ~~~CP~Cr~~~ 59 (81)
T 2csy_A 49 TPRCYICDQPT 59 (81)
T ss_dssp CSBCSSSCCBC
T ss_pred CCcCCCcCccc
Confidence 45799999874
No 31
>1v87_A Deltex protein 2; ring-H2 domain, zinc-binding domain, notch signaling, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.44.1.1
Probab=55.13 E-value=4.4 Score=24.55 Aligned_cols=11 Identities=27% Similarity=0.833 Sum_probs=8.7
Q ss_pred CCCCCcccccc
Q 035580 20 PKEKCPLCREA 30 (83)
Q Consensus 20 ~~~KCPlCRe~ 30 (83)
....||+||..
T Consensus 81 ~~~~CP~CR~~ 91 (114)
T 1v87_A 81 GSLQCPSCKTI 91 (114)
T ss_dssp SCCBCTTTCCB
T ss_pred CCCcCCCCCCc
Confidence 45689999974
No 32
>2yho_A E3 ubiquitin-protein ligase mylip; ligase, E2 ligase-E3 ligase complex, ring zinc-finger, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 2yhn_A
Probab=52.92 E-value=3.7 Score=24.45 Aligned_cols=8 Identities=50% Similarity=1.531 Sum_probs=7.4
Q ss_pred CCcccccc
Q 035580 23 KCPLCREA 30 (83)
Q Consensus 23 KCPlCRe~ 30 (83)
+||+||+.
T Consensus 51 ~CP~Cr~~ 58 (79)
T 2yho_A 51 SCPVCRSR 58 (79)
T ss_dssp BCTTTCCB
T ss_pred cCCCCCch
Confidence 99999986
No 33
>2d8t_A Dactylidin, ring finger protein 146; RNF146, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=52.40 E-value=3.9 Score=23.04 Aligned_cols=9 Identities=44% Similarity=1.390 Sum_probs=7.5
Q ss_pred CCCcccccc
Q 035580 22 EKCPLCREA 30 (83)
Q Consensus 22 ~KCPlCRe~ 30 (83)
.+||+||+.
T Consensus 50 ~~CP~Cr~~ 58 (71)
T 2d8t_A 50 KRCALCRQE 58 (71)
T ss_dssp SBCSSSCCB
T ss_pred CcCcCcCch
Confidence 689999976
No 34
>1bor_A Transcription factor PML; proto-oncogene, nuclear bodies (PODS), leukemia, transcription regulation; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=52.13 E-value=4.7 Score=22.14 Aligned_cols=13 Identities=23% Similarity=0.723 Sum_probs=9.8
Q ss_pred CCCCCcccccccc
Q 035580 20 PKEKCPLCREAGV 32 (83)
Q Consensus 20 ~~~KCPlCRe~gV 32 (83)
...+||+||+.-.
T Consensus 36 ~~~~CP~Cr~~~~ 48 (56)
T 1bor_A 36 SGMQCPICQAPWP 48 (56)
T ss_dssp SSSSCSSCCSSSS
T ss_pred CCCCCCcCCcEee
Confidence 3568999998743
No 35
>1e4u_A Transcriptional repressor NOT4; gene regulation, transcriptional control; NMR {Homo sapiens} SCOP: g.44.1.1 PDB: 1ur6_B
Probab=51.21 E-value=4.6 Score=24.29 Aligned_cols=11 Identities=36% Similarity=0.999 Sum_probs=8.9
Q ss_pred CCCCCcccccc
Q 035580 20 PKEKCPLCREA 30 (83)
Q Consensus 20 ~~~KCPlCRe~ 30 (83)
....||+||+.
T Consensus 49 ~~~~CP~CR~~ 59 (78)
T 1e4u_A 49 ENGLCPACRKP 59 (78)
T ss_dssp SCSBCTTTCCB
T ss_pred CCCCCCCCCCc
Confidence 35789999985
No 36
>1t1h_A Gspef-atpub14, armadillo repeat containing protein; ubiquitin ligase, E3 ligase, U-BOX,; NMR {Arabidopsis thaliana} SCOP: g.44.1.2
Probab=50.82 E-value=8.3 Score=21.74 Aligned_cols=15 Identities=27% Similarity=0.589 Sum_probs=10.7
Q ss_pred CCCCcccccccccCc
Q 035580 21 KEKCPLCREAGVYEG 35 (83)
Q Consensus 21 ~~KCPlCRe~gVy~~ 35 (83)
..+||+||+.--..+
T Consensus 43 ~~~CP~C~~~~~~~~ 57 (78)
T 1t1h_A 43 HKTCPKSQETLLHAG 57 (78)
T ss_dssp CCBCTTTCCBCSSCC
T ss_pred cCCCCCCcCCCChhh
Confidence 678999998744333
No 37
>1z6u_A NP95-like ring finger protein isoform B; structural genomics consortium, ligase, ubiquitin-protein ligase, cell cycle regulation, SGC; 2.10A {Homo sapiens}
Probab=50.76 E-value=2.5 Score=27.94 Aligned_cols=14 Identities=29% Similarity=0.482 Sum_probs=9.9
Q ss_pred CCCCcccccccccC
Q 035580 21 KEKCPLCREAGVYE 34 (83)
Q Consensus 21 ~~KCPlCRe~gVy~ 34 (83)
...||+||+.--..
T Consensus 113 ~~~CP~Cr~~~~~~ 126 (150)
T 1z6u_A 113 VFSCPACRHDLGQN 126 (150)
T ss_dssp CCBCTTTCCBCCTT
T ss_pred CCcCCCCCccCCCC
Confidence 34799999875544
No 38
>1jm7_B BARD1, BRCA1-associated ring domain protein 1; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=50.46 E-value=8.5 Score=23.74 Aligned_cols=15 Identities=20% Similarity=0.609 Sum_probs=11.1
Q ss_pred CCCcccccccccCcc
Q 035580 22 EKCPLCREAGVYEGA 36 (83)
Q Consensus 22 ~KCPlCRe~gVy~~A 36 (83)
.+||+||+.-.+.+-
T Consensus 56 ~~CP~Cr~~~~~~~~ 70 (117)
T 1jm7_B 56 TGCPVCYTPAWIQDL 70 (117)
T ss_dssp TBCSSSCCBCSCSSC
T ss_pred CCCcCCCCcCccccc
Confidence 689999998655443
No 39
>2ysj_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=50.39 E-value=7.6 Score=21.12 Aligned_cols=23 Identities=17% Similarity=0.626 Sum_probs=15.7
Q ss_pred cccCCCCCCCcccccccccCcchhh
Q 035580 15 LKAAEPKEKCPLCREAGVYEGAVHL 39 (83)
Q Consensus 15 lK~A~~~~KCPlCRe~gVy~~AVhl 39 (83)
++....+..||||.+ .|.+.|.+
T Consensus 14 ~~~~~~~~~C~IC~~--~~~~p~~~ 36 (63)
T 2ysj_A 14 VNKLQEEVICPICLD--ILQKPVTI 36 (63)
T ss_dssp CCCCCCCCBCTTTCS--BCSSCEEC
T ss_pred HHhCccCCCCCcCCc--hhCCeEEe
Confidence 445566789999986 46666543
No 40
>3lrq_A E3 ubiquitin-protein ligase TRIM37; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: MSE; 2.29A {Homo sapiens}
Probab=47.83 E-value=7 Score=23.65 Aligned_cols=16 Identities=31% Similarity=0.648 Sum_probs=11.5
Q ss_pred CCCcccccccccCcch
Q 035580 22 EKCPLCREAGVYEGAV 37 (83)
Q Consensus 22 ~KCPlCRe~gVy~~AV 37 (83)
..||+||..--..+-+
T Consensus 59 ~~CP~Cr~~~~~~~l~ 74 (100)
T 3lrq_A 59 AQCPHCRAPLQLRELV 74 (100)
T ss_dssp SBCTTTCCBCCGGGCE
T ss_pred CCCCCCCCcCCHHHhH
Confidence 6899999986544443
No 41
>2y43_A E3 ubiquitin-protein ligase RAD18; DNA repair, metal-binding, translesion synthesis, UB conjugation pathway; 1.80A {Homo sapiens}
Probab=46.50 E-value=12 Score=22.21 Aligned_cols=12 Identities=33% Similarity=0.753 Sum_probs=9.3
Q ss_pred CCCCcccccccc
Q 035580 21 KEKCPLCREAGV 32 (83)
Q Consensus 21 ~~KCPlCRe~gV 32 (83)
..+||+||+.-.
T Consensus 57 ~~~CP~Cr~~~~ 68 (99)
T 2y43_A 57 KTQCPTCCVTVT 68 (99)
T ss_dssp CCBCTTTCCBCC
T ss_pred CCCCCCCCCcCC
Confidence 468999998644
No 42
>1x9b_A Hypothetical membrane protein TA0354_69_121; alpha protein, structural genomics, protein structure initiative, PSI; NMR {Thermoplasma acidophilum} SCOP: a.10.2.1
Probab=45.39 E-value=24 Score=21.50 Aligned_cols=28 Identities=39% Similarity=0.652 Sum_probs=20.9
Q ss_pred hhHHHhHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 035580 38 HLDELNLLLSRSCQEYWEERLKMERVARVRQAKEHWE 74 (83)
Q Consensus 38 hl~EL~lLlk~rc~eYW~eRl~~ER~e~vkq~KE~wd 74 (83)
||.||.-|-++--..| .+|+.++|+-|.
T Consensus 24 nL~ELE~is~rlg~~Y---------~~~LeeaK~kWk 51 (53)
T 1x9b_A 24 NLNELEALAVRLGKSY---------RIQLDQAKEKWK 51 (53)
T ss_dssp HHHHHHHHHHHHCSHH---------HHHHHHHHHHHC
T ss_pred hHHHHHHHHHHHchHH---------HHHHHHHHHhhc
Confidence 7888888877766666 345788999884
No 43
>2l0b_A E3 ubiquitin-protein ligase praja-1; zinc finger, NESG, structural genomics, PSI-2, protein struc initiative; NMR {Homo sapiens}
Probab=45.39 E-value=7.4 Score=23.16 Aligned_cols=10 Identities=40% Similarity=1.092 Sum_probs=6.6
Q ss_pred CCCCcccccc
Q 035580 21 KEKCPLCREA 30 (83)
Q Consensus 21 ~~KCPlCRe~ 30 (83)
...||+||..
T Consensus 77 ~~~CP~Cr~~ 86 (91)
T 2l0b_A 77 SGTCPVCRCM 86 (91)
T ss_dssp TCBCTTTCCB
T ss_pred CCcCcCcCcc
Confidence 3468888764
No 44
>1l8d_A DNA double-strand break repair RAD50 ATPase; zinc finger, DNA repair, recombination, HOOK motif, replication; HET: DNA CIT; 2.20A {Pyrococcus furiosus} SCOP: h.4.12.1
Probab=43.57 E-value=50 Score=20.18 Aligned_cols=10 Identities=50% Similarity=1.245 Sum_probs=7.8
Q ss_pred CCCCcccccc
Q 035580 21 KEKCPLCREA 30 (83)
Q Consensus 21 ~~KCPlCRe~ 30 (83)
...||+|-++
T Consensus 47 g~~CPvCgs~ 56 (112)
T 1l8d_A 47 KGKCPVCGRE 56 (112)
T ss_dssp SEECTTTCCE
T ss_pred CCCCCCCCCc
Confidence 5679999764
No 45
>2ct0_A Non-SMC element 1 homolog; ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=42.68 E-value=8.4 Score=23.51 Aligned_cols=14 Identities=21% Similarity=0.600 Sum_probs=10.1
Q ss_pred CCCCCccccccccc
Q 035580 20 PKEKCPLCREAGVY 33 (83)
Q Consensus 20 ~~~KCPlCRe~gVy 33 (83)
.+..||+||..=.+
T Consensus 51 ~~~~CP~Cr~~w~~ 64 (74)
T 2ct0_A 51 AEPRCPHCNDYWPH 64 (74)
T ss_dssp SSCCCTTTCSCCCS
T ss_pred CCCCCCCCcCcCCC
Confidence 34789999976433
No 46
>2ecv_A Tripartite motif-containing protein 5; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=42.49 E-value=12 Score=20.84 Aligned_cols=22 Identities=23% Similarity=0.555 Sum_probs=14.5
Q ss_pred cccCCCCCCCcccccccccCcchh
Q 035580 15 LKAAEPKEKCPLCREAGVYEGAVH 38 (83)
Q Consensus 15 lK~A~~~~KCPlCRe~gVy~~AVh 38 (83)
+........||||.+. |.+.+.
T Consensus 13 ~~~~~~~~~C~IC~~~--~~~p~~ 34 (85)
T 2ecv_A 13 LVNVKEEVTCPICLEL--LTQPLS 34 (85)
T ss_dssp CCCCCCCCCCTTTCSC--CSSCBC
T ss_pred HHHccCCCCCCCCCcc--cCCcee
Confidence 4445567789999874 555553
No 47
>2ecw_A Tripartite motif-containing protein 30; metal binding protein, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=41.65 E-value=12 Score=20.75 Aligned_cols=20 Identities=25% Similarity=0.625 Sum_probs=12.9
Q ss_pred ccCCCCCCCcccccccccCcch
Q 035580 16 KAAEPKEKCPLCREAGVYEGAV 37 (83)
Q Consensus 16 K~A~~~~KCPlCRe~gVy~~AV 37 (83)
.....+..||||.+. |.+.|
T Consensus 14 ~~~~~~~~C~IC~~~--~~~p~ 33 (85)
T 2ecw_A 14 EMIKEEVTCPICLEL--LKEPV 33 (85)
T ss_dssp CCCCTTTSCTTTCSC--CSSCE
T ss_pred HhCccCCCCcCCChh--hCcce
Confidence 334556789999765 55555
No 48
>2ecn_A Ring finger protein 141; RNF141, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=41.05 E-value=12 Score=20.63 Aligned_cols=19 Identities=21% Similarity=0.546 Sum_probs=12.4
Q ss_pred hcccccCCCCCCCcccccc
Q 035580 12 VDGLKAAEPKEKCPLCREA 30 (83)
Q Consensus 12 ~~GlK~A~~~~KCPlCRe~ 30 (83)
...++.......||||.+.
T Consensus 6 ~~~~~~~~~~~~C~IC~~~ 24 (70)
T 2ecn_A 6 SGRVKQLTDEEECCICMDG 24 (70)
T ss_dssp SCCCCCCCCCCCCSSSCCS
T ss_pred hhhhhcCCCCCCCeeCCcC
Confidence 3445556667778888764
No 49
>2kr4_A Ubiquitin conjugation factor E4 B; U-BOX, UFD2, ring, E3 ligase, UBL conjugation pathway; NMR {Mus musculus}
Probab=40.81 E-value=14 Score=22.02 Aligned_cols=29 Identities=14% Similarity=-0.015 Sum_probs=16.3
Q ss_pred CCCCcccccccccCcchhhHHHhHHHhhhhHHH
Q 035580 21 KEKCPLCREAGVYEGAVHLDELNLLLSRSCQEY 53 (83)
Q Consensus 21 ~~KCPlCRe~gVy~~AVhl~EL~lLlk~rc~eY 53 (83)
...||+||++=-..+-+. |..|++...+|
T Consensus 48 ~~~cP~~~~~l~~~~l~p----n~~L~~~i~~~ 76 (85)
T 2kr4_A 48 SPTDPFNRQMLTESMLEP----VPELKEQIQAW 76 (85)
T ss_dssp CSBCTTTCCBCCGGGCEE----CHHHHHHHHHH
T ss_pred CCCCCCCcCCCChHhcch----HHHHHHHHHHH
Confidence 468999998754443333 44444444443
No 50
>3dpl_R Ring-box protein 1; ubiquitin, NEDD8, cullin, HOST-virus interaction, receptor, UBL conjugation, UBL conjugation pathway, acetylation, cytoplasm; 2.60A {Homo sapiens} SCOP: g.44.1.1 PDB: 3dqv_R 3rtr_B 4f52_B 1u6g_B 2hye_D* 4a0c_D 4a0l_F* 1ldj_B 1ldk_C 2lgv_A
Probab=38.50 E-value=8.1 Score=24.54 Aligned_cols=14 Identities=21% Similarity=0.577 Sum_probs=10.9
Q ss_pred CCCCcccccccccC
Q 035580 21 KEKCPLCREAGVYE 34 (83)
Q Consensus 21 ~~KCPlCRe~gVy~ 34 (83)
...||+||+.=.|.
T Consensus 89 ~~~CP~Cr~~~~~~ 102 (106)
T 3dpl_R 89 RQVCPLDNREWEFQ 102 (106)
T ss_dssp CSBCSSSCSBCCEE
T ss_pred CCcCcCCCCcceee
Confidence 56899999985554
No 51
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}
Probab=38.36 E-value=11 Score=22.63 Aligned_cols=12 Identities=33% Similarity=0.797 Sum_probs=9.0
Q ss_pred CCCCcccccccc
Q 035580 21 KEKCPLCREAGV 32 (83)
Q Consensus 21 ~~KCPlCRe~gV 32 (83)
..+||+||+.--
T Consensus 48 ~~~CP~Cr~~~~ 59 (133)
T 4ap4_A 48 ANTCPTCRKKIN 59 (133)
T ss_dssp CSBCTTTCCBCT
T ss_pred CCCCCCCCCcCc
Confidence 348999998643
No 52
>2ckl_B Ubiquitin ligase protein RING2; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_C 2h0d_B
Probab=38.03 E-value=9.7 Score=24.67 Aligned_cols=11 Identities=36% Similarity=1.017 Sum_probs=9.1
Q ss_pred CCCCccccccc
Q 035580 21 KEKCPLCREAG 31 (83)
Q Consensus 21 ~~KCPlCRe~g 31 (83)
...||+||..-
T Consensus 90 ~~~CP~Cr~~~ 100 (165)
T 2ckl_B 90 NKECPTCRKKL 100 (165)
T ss_dssp CCBCTTTCCBC
T ss_pred cCCCCCCCCcC
Confidence 57899999874
No 53
>1wgm_A Ubiquitin conjugation factor E4A; ubiquitinating enzyme, KIAA0126, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.2
Probab=37.98 E-value=22 Score=21.90 Aligned_cols=23 Identities=17% Similarity=0.157 Sum_probs=13.9
Q ss_pred CCCCcccccccccCcchhhHHHh
Q 035580 21 KEKCPLCREAGVYEGAVHLDELN 43 (83)
Q Consensus 21 ~~KCPlCRe~gVy~~AVhl~EL~ 43 (83)
...||+||++=-..+-+.-..|.
T Consensus 57 ~~~cP~~~~~l~~~~L~pn~~Lk 79 (98)
T 1wgm_A 57 DQTDPFNRSPLTMDQIRPNTELK 79 (98)
T ss_dssp SCBCTTTCSBCCTTTSEECHHHH
T ss_pred CCCCCCCCCCCChhhceEcHHHH
Confidence 45899999875554444333333
No 54
>2vpb_A Hpygo1, pygopus homolog 1; gene regulation, WNT signaling pathway, WNT signaling complex, chromosomal rearrangement, signaling protein; 1.59A {Homo sapiens} PDB: 2vpd_A 2yyr_A* 2dx8_A* 2vp7_A 2vpg_A* 2vpe_A*
Probab=35.00 E-value=11 Score=22.35 Aligned_cols=15 Identities=20% Similarity=0.722 Sum_probs=8.5
Q ss_pred ccCCCCCCCcccccc
Q 035580 16 KAAEPKEKCPLCREA 30 (83)
Q Consensus 16 K~A~~~~KCPlCRe~ 30 (83)
-+++|...||+|+++
T Consensus 3 ~~~~~~~~C~~C~~p 17 (65)
T 2vpb_A 3 SSSDPVYPCGICTNE 17 (65)
T ss_dssp ------CBCTTTCSB
T ss_pred CCCCCcCcCccCCCc
Confidence 457889999999997
No 55
>2d8s_A Cellular modulator of immune recognition; C-MIR, march8, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=33.79 E-value=12 Score=22.54 Aligned_cols=14 Identities=29% Similarity=0.607 Sum_probs=10.4
Q ss_pred CCCCcccccccccC
Q 035580 21 KEKCPLCREAGVYE 34 (83)
Q Consensus 21 ~~KCPlCRe~gVy~ 34 (83)
+..||+||..=.+.
T Consensus 58 ~~~CplCr~~~~~~ 71 (80)
T 2d8s_A 58 TRCCELCKYEFIME 71 (80)
T ss_dssp CSBCSSSCCBCCCC
T ss_pred CCCCCCCCCeeecC
Confidence 45899999875544
No 56
>2k5c_A Uncharacterized protein PF0385; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; NMR {Pyrococcus furiosus}
Probab=32.80 E-value=8 Score=26.00 Aligned_cols=12 Identities=33% Similarity=0.811 Sum_probs=8.9
Q ss_pred CCCCCccccccc
Q 035580 20 PKEKCPLCREAG 31 (83)
Q Consensus 20 ~~~KCPlCRe~g 31 (83)
.-+|||+|-++=
T Consensus 7 ~~~~~PlCG~~L 18 (95)
T 2k5c_A 7 HMAKCPICGSPL 18 (95)
T ss_dssp -CEECSSSCCEE
T ss_pred ccccCCcCCCcc
Confidence 457999998763
No 57
>1lko_A Rubrerythrin all-iron(II) form; reduced form, DIIRON, four-helix bundle, rubre like, electron transport; 1.63A {Desulfovibrio vulgaris} SCOP: a.25.1.1 g.41.5.1 PDB: 1dvb_A 1jyb_A 1b71_A 1lkm_A 1lkp_A 1qyb_A 1s2z_A 1s30_A 1ryt_A
Probab=32.61 E-value=13 Score=25.65 Aligned_cols=20 Identities=25% Similarity=0.715 Sum_probs=12.7
Q ss_pred hhhcccccCCCCCCCcccccccc
Q 035580 10 TIVDGLKAAEPKEKCPLCREAGV 32 (83)
Q Consensus 10 ~i~~GlK~A~~~~KCPlCRe~gV 32 (83)
.|++|- ..|+ +||+|..+.-
T Consensus 163 ~~~~g~--~~p~-~CP~C~~~k~ 182 (191)
T 1lko_A 163 YVHEGT--GAPE-LCPACAHPKA 182 (191)
T ss_dssp CEEEEE--ECCS-BCTTTCCBGG
T ss_pred CEeeCC--CCCC-CCCCCcCCHH
Confidence 355664 2344 9999987643
No 58
>1rmd_A RAG1; V(D)J recombination, antibody, MAD, ring finger, zinc binuclear cluster, zinc finger, DNA-binding protein; 2.10A {Mus musculus} SCOP: g.37.1.1 g.44.1.1
Probab=32.39 E-value=14 Score=22.53 Aligned_cols=15 Identities=27% Similarity=0.508 Sum_probs=10.7
Q ss_pred CCCCcccccccccCc
Q 035580 21 KEKCPLCREAGVYEG 35 (83)
Q Consensus 21 ~~KCPlCRe~gVy~~ 35 (83)
...||+||..-...+
T Consensus 58 ~~~CP~Cr~~~~~~~ 72 (116)
T 1rmd_A 58 GSYCPSCRYPCFPTD 72 (116)
T ss_dssp CSBCTTTCCBCCGGG
T ss_pred cCcCCCCCCCCCHhh
Confidence 458999999854433
No 59
>3hct_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 3hcu_A 2eci_A 2jmd_A
Probab=32.04 E-value=20 Score=22.02 Aligned_cols=10 Identities=40% Similarity=0.713 Sum_probs=7.6
Q ss_pred CCcccccccc
Q 035580 23 KCPLCREAGV 32 (83)
Q Consensus 23 KCPlCRe~gV 32 (83)
+||+||..--
T Consensus 55 ~CP~Cr~~~~ 64 (118)
T 3hct_A 55 KCPVDNEILL 64 (118)
T ss_dssp BCTTTCCBCC
T ss_pred CCCCCCCCcC
Confidence 8999987643
No 60
>3vpi_A Type VI secretion exported 1; hydrolase; HET: MSE; 1.50A {Pseudomonas aeruginosa} PDB: 3vpj_A
Probab=31.34 E-value=9.1 Score=28.06 Aligned_cols=27 Identities=22% Similarity=0.698 Sum_probs=15.3
Q ss_pred ccccCcchhhHHHhHHHhhhhHHHHHH
Q 035580 30 AGVYEGAVHLDELNLLLSRSCQEYWEE 56 (83)
Q Consensus 30 ~gVy~~AVhl~EL~lLlk~rc~eYW~e 56 (83)
.|+-+.--||+-|+--|++-|+.-|+|
T Consensus 12 ~~~~~~~~~~~~~~q~i~~ac~n~w~~ 38 (174)
T 3vpi_A 12 SGLVPRGSHMDSLDQCIVNACKNSWDK 38 (174)
T ss_dssp -----------CCCHHHHHHHHHHHTC
T ss_pred cCcccCccchhhHHHHHHHHHHhhhhh
Confidence 477788899999999999999999987
No 61
>2ksn_A Ubiquitin domain-containing protein 2; UBTD2, DC-UBP, signaling protein; NMR {Homo sapiens}
Probab=30.62 E-value=17 Score=25.65 Aligned_cols=17 Identities=18% Similarity=0.395 Sum_probs=9.9
Q ss_pred cccccccccCcchhhHH
Q 035580 25 PLCREAGVYEGAVHLDE 41 (83)
Q Consensus 25 PlCRe~gVy~~AVhl~E 41 (83)
||++..-+...-..+++
T Consensus 19 pl~~~~~~W~s~~~~Tr 35 (137)
T 2ksn_A 19 PLKKEKPKWKSDYPMTD 35 (137)
T ss_dssp CCCCCCCCSSCSSCCSH
T ss_pred CCCCCCCCccCCCCCCH
Confidence 66666665555555544
No 62
>2ecj_A Tripartite motif-containing protein 39; TRIM39, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=30.17 E-value=23 Score=18.49 Aligned_cols=22 Identities=23% Similarity=0.474 Sum_probs=14.5
Q ss_pred cccCCCCCCCcccccccccCcchh
Q 035580 15 LKAAEPKEKCPLCREAGVYEGAVH 38 (83)
Q Consensus 15 lK~A~~~~KCPlCRe~gVy~~AVh 38 (83)
+........||||.+. |.+.|.
T Consensus 9 ~~~~~~~~~C~IC~~~--~~~p~~ 30 (58)
T 2ecj_A 9 LENLQVEASCSVCLEY--LKEPVI 30 (58)
T ss_dssp SSCSCCCCBCSSSCCB--CSSCCC
T ss_pred hhccccCCCCccCCcc--cCccEe
Confidence 3445567899999874 555543
No 63
>3t6p_A Baculoviral IAP repeat-containing protein 2; ring, BIR, CARD, UBA, apoptosis, ubiquitin ligase, SMAC/ ubiquitin, caspase, IAP family, SMAC mimetic; 1.90A {Homo sapiens} PDB: 1qbh_A 2l9m_A 3eb5_A 3eb6_A 4auq_B
Probab=29.48 E-value=18 Score=27.37 Aligned_cols=9 Identities=56% Similarity=1.483 Sum_probs=7.8
Q ss_pred CCCcccccc
Q 035580 22 EKCPLCREA 30 (83)
Q Consensus 22 ~KCPlCRe~ 30 (83)
.+||+||.+
T Consensus 327 ~~CP~CR~~ 335 (345)
T 3t6p_A 327 RKCPICRGI 335 (345)
T ss_dssp SBCTTTCCB
T ss_pred CcCCCCCCC
Confidence 689999986
No 64
>2ct2_A Tripartite motif protein 32; zinc-finger protein HT2A, TAT- interacting protein, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=29.01 E-value=23 Score=19.94 Aligned_cols=16 Identities=38% Similarity=0.806 Sum_probs=11.6
Q ss_pred cccCCCCCCCcccccc
Q 035580 15 LKAAEPKEKCPLCREA 30 (83)
Q Consensus 15 lK~A~~~~KCPlCRe~ 30 (83)
.+.......||||.+.
T Consensus 9 ~~~~~~~~~C~IC~~~ 24 (88)
T 2ct2_A 9 LDALREVLECPICMES 24 (88)
T ss_dssp CCCCCSCCBCTTTCCB
T ss_pred hhhccCCCCCccCCcc
Confidence 3445667889999874
No 65
>2ep4_A Ring finger protein 24; zinc binding, ubiquitin, E3 enzyme, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=28.34 E-value=27 Score=19.33 Aligned_cols=17 Identities=29% Similarity=0.581 Sum_probs=12.8
Q ss_pred ccccCCCCCCCcccccc
Q 035580 14 GLKAAEPKEKCPLCREA 30 (83)
Q Consensus 14 GlK~A~~~~KCPlCRe~ 30 (83)
.++....+..||||.+.
T Consensus 8 ~~~~~~~~~~C~IC~~~ 24 (74)
T 2ep4_A 8 KVKELNLHELCAVCLED 24 (74)
T ss_dssp CCCCCCCSCBCSSSCCB
T ss_pred ccccCCCCCCCcCCCcc
Confidence 34556678889999987
No 66
>3o9x_A Uncharacterized HTH-type transcriptional regulato; HTH-XRE DNA binding motif, transcriptional regulator, bacter antitoxin, Zn binding protein, transcription regulator-DNA; HET: DNA; 2.10A {Escherichia coli} PDB: 3gn5_A* 3gn5_B* 2kz8_A
Probab=28.33 E-value=18 Score=22.30 Aligned_cols=10 Identities=40% Similarity=1.232 Sum_probs=6.9
Q ss_pred CCCCcccccc
Q 035580 21 KEKCPLCREA 30 (83)
Q Consensus 21 ~~KCPlCRe~ 30 (83)
+.|||+|...
T Consensus 2 ~M~Cp~Cg~~ 11 (133)
T 3o9x_A 2 HMKCPVCHQG 11 (133)
T ss_dssp CCBCTTTSSS
T ss_pred CcCCCcCCCC
Confidence 4578888754
No 67
>3knv_A TNF receptor-associated factor 2; cross-brace, alternative splicing, apoptosis, cytoplasm, metal-binding, UBL conjugation, zinc, zinc-finger; 1.90A {Homo sapiens}
Probab=27.98 E-value=7.7 Score=25.40 Aligned_cols=13 Identities=31% Similarity=1.022 Sum_probs=9.8
Q ss_pred CCCCccccccccc
Q 035580 21 KEKCPLCREAGVY 33 (83)
Q Consensus 21 ~~KCPlCRe~gVy 33 (83)
..+||+||+...+
T Consensus 66 ~~~CP~Cr~~~~~ 78 (141)
T 3knv_A 66 PQNCAACVHEGIY 78 (141)
T ss_dssp CEECHHHHHTTCC
T ss_pred CCCCCCCCCcccc
Confidence 3589999997544
No 68
>1o20_A Gamma-glutamyl phosphate reductase; TM0293, structural genom JCSG, PSI, protein structure initiative, joint center for S genomics; 2.00A {Thermotoga maritima} SCOP: c.82.1.1
Probab=27.38 E-value=44 Score=25.21 Aligned_cols=40 Identities=15% Similarity=0.194 Sum_probs=26.2
Q ss_pred chhhHHHhHHHhhh--hHHHHHHHHHHHHHHHHHHHHHHHHH
Q 035580 36 AVHLDELNLLLSRS--CQEYWEERLKMERVARVRQAKEHWES 75 (83)
Q Consensus 36 AVhl~EL~lLlk~r--c~eYW~eRl~~ER~e~vkq~KE~wd~ 75 (83)
--||+|++-++..- -..=|...-..||.+.++...+.-+.
T Consensus 10 ~~~~~~~~~av~aA~~A~~~w~~~~~~~R~~~L~~~a~~l~~ 51 (427)
T 1o20_A 10 HHHMDELLEKAKKVREAWDVLRNATTREKNKAIKKIAEKLDE 51 (427)
T ss_dssp ----CHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHH
T ss_pred hhhhHHHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHH
Confidence 35899999999753 33348777788898888877665443
No 69
>4efa_G V-type proton ATPase subunit G; heterotrimer, peripheral stalk, vacuolar ATPase, hydrolase; 2.82A {Saccharomyces cerevisiae} PDB: 4dl0_K 2k88_A 2kwy_A
Probab=27.11 E-value=37 Score=22.62 Aligned_cols=12 Identities=33% Similarity=0.396 Sum_probs=8.0
Q ss_pred HHHHHHHHHHHH
Q 035580 60 MERVARVRQAKE 71 (83)
Q Consensus 60 ~ER~e~vkq~KE 71 (83)
..|..|+||||+
T Consensus 31 k~k~~rLKqAK~ 42 (119)
T 4efa_G 31 KYRQDKLKQAKT 42 (119)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 456677777775
No 70
>2lri_C Autoimmune regulator; Zn binding protein domain, apeced, transcription; NMR {Homo sapiens}
Probab=26.76 E-value=29 Score=20.52 Aligned_cols=20 Identities=20% Similarity=0.714 Sum_probs=15.6
Q ss_pred hcccccCCCCCCCccccccc
Q 035580 12 VDGLKAAEPKEKCPLCREAG 31 (83)
Q Consensus 12 ~~GlK~A~~~~KCPlCRe~g 31 (83)
++|-....+.++|-+|+..|
T Consensus 3 ~E~~~~~~~~~~C~vC~~~~ 22 (66)
T 2lri_C 3 MEGQQNLAPGARCGVCGDGT 22 (66)
T ss_dssp CTTTTCCCTTCCCTTTSCCT
T ss_pred cccccCCCCCCCcCCCCCCC
Confidence 45666677889999999876
No 71
>2kre_A Ubiquitin conjugation factor E4 B; U-box domain, E3 ubiquitin ligase, E4 polyubiquitin chain EL factor, phosphoprotein, UBL conjugation pathway; NMR {Homo sapiens} PDB: 3l1x_A 3l1z_B
Probab=26.22 E-value=35 Score=21.06 Aligned_cols=22 Identities=18% Similarity=0.084 Sum_probs=13.1
Q ss_pred CCCCcccccccccCcchhhHHH
Q 035580 21 KEKCPLCREAGVYEGAVHLDEL 42 (83)
Q Consensus 21 ~~KCPlCRe~gVy~~AVhl~EL 42 (83)
...||+||++=-..+-+.-..|
T Consensus 63 ~~~cP~~~~~l~~~~L~pn~~L 84 (100)
T 2kre_A 63 SPTDPFNRQTLTESMLEPVPEL 84 (100)
T ss_dssp CSBCSSSCCBCCTTSSEECHHH
T ss_pred CCCCCCCCCCCChhhceECHHH
Confidence 4689999987544443333333
No 72
>4a0k_B E3 ubiquitin-protein ligase RBX1; ligase-DNA-binding protein-DNA complex, DNA-binding protein- complex; HET: DNA 3DR; 5.93A {Mus musculus}
Probab=25.18 E-value=15 Score=24.03 Aligned_cols=14 Identities=21% Similarity=0.577 Sum_probs=0.0
Q ss_pred CCCCcccccccccC
Q 035580 21 KEKCPLCREAGVYE 34 (83)
Q Consensus 21 ~~KCPlCRe~gVy~ 34 (83)
+..||+||+.=.|.
T Consensus 100 ~~~CP~Cr~~~~~~ 113 (117)
T 4a0k_B 100 RQVCPLDNREWEFQ 113 (117)
T ss_dssp --------------
T ss_pred CCcCCCCCCeeeee
Confidence 56799999874443
No 73
>3pwf_A Rubrerythrin; non heme iron peroxidases, oxidative stress, oxidoreductase; 1.64A {Pyrococcus furiosus} PDB: 3mps_A 3pza_A 3qvd_A 1nnq_A 2hr5_A
Probab=24.33 E-value=25 Score=24.11 Aligned_cols=13 Identities=31% Similarity=0.907 Sum_probs=9.2
Q ss_pred CCCCCCcccccccc
Q 035580 19 EPKEKCPLCREAGV 32 (83)
Q Consensus 19 ~~~~KCPlCRe~gV 32 (83)
.|+ +||+|-.+.-
T Consensus 152 ~p~-~CP~Cg~~~~ 164 (170)
T 3pwf_A 152 APE-YCPVCGAPKE 164 (170)
T ss_dssp CCS-BCTTTCCBGG
T ss_pred CCC-CCCCCCCCHH
Confidence 344 9999986643
No 74
>3vhs_A ATPase wrnip1; zinc finger, ubiquitin-binding domain, ubiquitin binding, ME binding protein; 1.90A {Homo sapiens}
Probab=23.86 E-value=17 Score=19.79 Aligned_cols=9 Identities=33% Similarity=1.276 Sum_probs=7.5
Q ss_pred CCCcccccc
Q 035580 22 EKCPLCREA 30 (83)
Q Consensus 22 ~KCPlCRe~ 30 (83)
-.||+|.|+
T Consensus 7 vqcpvcqq~ 15 (29)
T 3vhs_A 7 VQCPVCQQM 15 (29)
T ss_dssp EECTTTCCE
T ss_pred eeChHHHHh
Confidence 479999986
No 75
>3ga8_A HTH-type transcriptional regulator MQSA (YGIT/B30; helix-turn-helix, Zn-binding protein, DNA-binding, transcrip transcription regulation; HET: PE4; 1.70A {Escherichia coli k-12} PDB: 3hi2_A
Probab=23.82 E-value=21 Score=21.11 Aligned_cols=10 Identities=40% Similarity=1.232 Sum_probs=7.4
Q ss_pred CCCCcccccc
Q 035580 21 KEKCPLCREA 30 (83)
Q Consensus 21 ~~KCPlCRe~ 30 (83)
..|||+|-..
T Consensus 2 ~m~Cp~Cg~~ 11 (78)
T 3ga8_A 2 HMKCPVCHQG 11 (78)
T ss_dssp -CBCTTTSSS
T ss_pred ceECCCCCCC
Confidence 4689999765
No 76
>2lqt_A Coiled-coil-helix-coiled-coil-helix domain-contai protein 7; CHCH domain, mitochondrial import, alpha-hairpin, MIA40-DEPE disulfide relay system; NMR {Homo sapiens}
Probab=23.31 E-value=49 Score=21.53 Aligned_cols=16 Identities=19% Similarity=0.783 Sum_probs=11.5
Q ss_pred hhhhHHHHHHHHHHHH
Q 035580 47 SRSCQEYWEERLKMER 62 (83)
Q Consensus 47 k~rc~eYW~eRl~~ER 62 (83)
=+.|+.+|.+.+.+.|
T Consensus 44 Yk~CKk~W~~v~~eRR 59 (85)
T 2lqt_A 44 YKNCRRFWNSIVMQRR 59 (85)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3579999987665544
No 77
>3kup_A Chromobox protein homolog 3; chromo shadow domain, structural genomics consortium, SGC, acetylation, chromatin regulator, nucleus, phosphoprotein; 1.77A {Homo sapiens} SCOP: b.34.13.2 PDB: 1dz1_A
Probab=23.17 E-value=31 Score=20.45 Aligned_cols=25 Identities=28% Similarity=0.380 Sum_probs=19.4
Q ss_pred CcchhhHHHhHHHhhhhHHHHHHHH
Q 035580 34 EGAVHLDELNLLLSRSCQEYWEERL 58 (83)
Q Consensus 34 ~~AVhl~EL~lLlk~rc~eYW~eRl 58 (83)
.+.|...|+|+..-.-.-+|.++||
T Consensus 40 ~d~Vpa~e~n~~~PqlVI~fYE~~l 64 (65)
T 3kup_A 40 ADLVLAKEANMKCPQIVIAFYEERL 64 (65)
T ss_dssp CEEEEHHHHHHHCHHHHHHHHHHHC
T ss_pred hheEEHHHHHhhChHHHHHHHHHhc
Confidence 3578899998876666678888886
No 78
>4ayb_P DNA-directed RNA polymerase; transferase, multi-subunit, transcription; 3.20A {Sulfolobus shibatae} PDB: 2pmz_P 2wb1_P 2y0s_P 3hkz_P 2waq_P 4b1o_P 4b1p_X
Probab=22.56 E-value=27 Score=20.84 Aligned_cols=12 Identities=33% Similarity=0.861 Sum_probs=9.0
Q ss_pred CCCCCCcccccc
Q 035580 19 EPKEKCPLCREA 30 (83)
Q Consensus 19 ~~~~KCPlCRe~ 30 (83)
-|.-|||.|---
T Consensus 21 lP~IrCpyCGyr 32 (48)
T 4ayb_P 21 LPGVRCPYCGYK 32 (48)
T ss_dssp CSSSCCTTTCCS
T ss_pred CCCcccCccCcE
Confidence 378899999543
No 79
>1yuz_A Nigerythrin; rubrythrin, rubredoxin, hemerythrin, electron transfer, DIIR center, oxidoreductase; 1.40A {Desulfovibrio vulgaris subsp} SCOP: a.25.1.1 g.41.5.1 PDB: 1yv1_A 1yux_A
Probab=22.20 E-value=28 Score=24.38 Aligned_cols=18 Identities=44% Similarity=0.803 Sum_probs=12.4
Q ss_pred hhhcccccCCCCCCCccccccc
Q 035580 10 TIVDGLKAAEPKEKCPLCREAG 31 (83)
Q Consensus 10 ~i~~GlK~A~~~~KCPlCRe~g 31 (83)
.|++| .+..+||+|..+.
T Consensus 179 ~i~~g----~~p~~CP~C~~~k 196 (202)
T 1yuz_A 179 YIHKG----EDFEKCPICFRPK 196 (202)
T ss_dssp CEEES----SCCSBCTTTCCBG
T ss_pred CEEcC----cCCCCCCCCCCCh
Confidence 45677 2337999998654
No 80
>1vyx_A ORF K3, K3RING; zinc-binding protein, ring domain, cross-brace motif; NMR {Human herpesvirus 8} SCOP: g.44.1.3
Probab=21.53 E-value=29 Score=19.86 Aligned_cols=10 Identities=20% Similarity=0.770 Sum_probs=8.3
Q ss_pred CCCCcccccc
Q 035580 21 KEKCPLCREA 30 (83)
Q Consensus 21 ~~KCPlCRe~ 30 (83)
+..||+|+..
T Consensus 47 ~~~C~~C~~~ 56 (60)
T 1vyx_A 47 NTACQICGVV 56 (60)
T ss_dssp CSBCTTTCCB
T ss_pred CCccCCCCCe
Confidence 5789999975
No 81
>2y1n_A E3 ubiquitin-protein ligase; ligase-transferase complex, ubiquitin ring E3 ligase; HET: PTR; 2.00A {Homo sapiens} PDB: 2y1m_A* 4a4c_A* 4a4b_A* 1fbv_A* 3vgo_A 4a49_A* 2k4d_A 2ldr_A*
Probab=21.29 E-value=28 Score=27.35 Aligned_cols=13 Identities=31% Similarity=0.695 Sum_probs=9.4
Q ss_pred CCCCCcccccccc
Q 035580 20 PKEKCPLCREAGV 32 (83)
Q Consensus 20 ~~~KCPlCRe~gV 32 (83)
...+||+||+.-.
T Consensus 366 ~~~~CP~CR~~i~ 378 (389)
T 2y1n_A 366 EGQGCPFCRCEIK 378 (389)
T ss_dssp TCSBCTTTCCBCC
T ss_pred CCCCCCCCCCccC
Confidence 3568999998643
No 82
>3mjh_B Early endosome antigen 1; protein-zinc finger complex, beta BETA alpha fold, beta HAIR RAB5A GTPase, EEA1, protein transport; HET: GTP; 2.03A {Homo sapiens}
Probab=21.20 E-value=25 Score=19.20 Aligned_cols=7 Identities=43% Similarity=1.255 Sum_probs=5.6
Q ss_pred CCccccc
Q 035580 23 KCPLCRE 29 (83)
Q Consensus 23 KCPlCRe 29 (83)
-||+|..
T Consensus 7 iCP~C~~ 13 (34)
T 3mjh_B 7 ICPQCMK 13 (34)
T ss_dssp ECTTTCC
T ss_pred CCcHHHH
Confidence 5999975
No 83
>3hcs_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.20A {Homo sapiens}
Probab=21.15 E-value=41 Score=21.67 Aligned_cols=11 Identities=36% Similarity=0.567 Sum_probs=8.4
Q ss_pred CCccccccccc
Q 035580 23 KCPLCREAGVY 33 (83)
Q Consensus 23 KCPlCRe~gVy 33 (83)
+||+||+.--.
T Consensus 55 ~CP~Cr~~~~~ 65 (170)
T 3hcs_A 55 KCPVDNEILLE 65 (170)
T ss_dssp BCTTTCCBCCG
T ss_pred CCCCCccCcch
Confidence 89999987443
Done!