BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 035582
(268 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2BGH|A Chain A, Crystal Structure Of Vinorine Synthase
pdb|2BGH|B Chain B, Crystal Structure Of Vinorine Synthase
Length = 421
Score = 73.2 bits (178), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 81/305 (26%), Positives = 125/305 (40%), Gaps = 53/305 (17%)
Query: 2 YFPVALYYPINQDINLTSPTDIHRMIXXXXXXXXXXXXETLARFHQFAGKLNDDNLSVDC 61
+ P L+YP D NL P + + + L F+ AG++N N SVDC
Sbjct: 39 HIPFILFYPNPLDSNL-DPAQTSQHLKQSLS-------KVLTHFYPLAGRINV-NSSVDC 89
Query: 62 KDKGIYFVESRVDSPLNEFL-NQPDLFLINKLLRSEA--GIRVA-------KIQVTTFEC 111
D G+ FVE+RV + L++ + N +L +++ L S A G ++ ++++ FEC
Sbjct: 90 NDSGVPFVEARVQAQLSQAIQNVVELEKLDQYLPSAAYPGGKIEVNEDVPLAVKISFFEC 149
Query: 112 SGLII---------------TFKN-WAATACKNTEAAICPNNDVSY-------------L 142
G I TF N W AT C+ + PN D++ L
Sbjct: 150 GGTAIGVNLSHKIADVLSLATFLNAWTAT-CRGETEIVLPNFDLAARHFPPVDNTPSPEL 208
Query: 143 FPQNNDATRRFVFDXXXXXXXXXXXXS-SWVQNPTRAEAAPAVLCXXXXXXXXXXXXXXX 201
P N +RFVFD S S +N +R + A +
Sbjct: 209 VPDENVVMKRFVFDKEKIGALRAQASSASEEKNFSRVQLVVAYIWKHVIDVTRAKYGAKN 268
Query: 202 PTLLTHLVNLRRKARPPLSEYSMGKIVWMANALCTDDEPELD--SLVCLLREAIKKIDGD 259
++ VNLR + PPL Y+MG I + A D E + D L+ LR +++K + D
Sbjct: 269 KFVVVQAVNLRSRMNPPLPHYAMGNIATLLFA-AVDAEWDKDFPDLIGPLRTSLEKTEDD 327
Query: 260 FMKSL 264
L
Sbjct: 328 HNHEL 332
>pdb|4G2M|A Chain A, Structure Of A Lys-Hct Mutant From Coffea Canephora
(Crystal Form 2)
Length = 439
Score = 36.2 bits (82), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 22/83 (26%), Positives = 42/83 (50%), Gaps = 9/83 (10%)
Query: 41 TLARFHQFAGKLN---DDNLSVDCKDKGIYFVESRVDSPLNEFLNQPDLFLINKLLRS-- 95
L F+ AG+L D + ++C +G+ FVE+ D +++F + + +L+ +
Sbjct: 68 ALVPFYPMAGRLKRDEDGRIEIECNGEGVLFVEAESDGVVDDFGDFAPTLELRRLIPAVD 127
Query: 96 -EAGIR---VAKIQVTTFECSGL 114
GI + +QVT F+C G+
Sbjct: 128 YSQGISSYALLVLQVTYFKCGGV 150
>pdb|4G0B|A Chain A, Structure Of Native Hct From Coffea Canephora
pdb|4G0B|B Chain B, Structure Of Native Hct From Coffea Canephora
Length = 436
Score = 36.2 bits (82), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 22/83 (26%), Positives = 42/83 (50%), Gaps = 9/83 (10%)
Query: 41 TLARFHQFAGKLN---DDNLSVDCKDKGIYFVESRVDSPLNEFLNQPDLFLINKLLRS-- 95
L F+ AG+L D + ++C +G+ FVE+ D +++F + + +L+ +
Sbjct: 65 ALVPFYPMAGRLKRDEDGRIEIECNGEGVLFVEAESDGVVDDFGDFAPTLELRRLIPAVD 124
Query: 96 -EAGIR---VAKIQVTTFECSGL 114
GI + +QVT F+C G+
Sbjct: 125 YSQGISSYALLVLQVTYFKCGGV 147
>pdb|3R1I|A Chain A, Crystal Structure Of A Short-Chain Type
DehydrogenaseREDUCTASE FROM Mycobacterium Marinum
pdb|3R1I|B Chain B, Crystal Structure Of A Short-Chain Type
DehydrogenaseREDUCTASE FROM Mycobacterium Marinum
Length = 276
Score = 33.5 bits (75), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 26/93 (27%), Positives = 41/93 (44%), Gaps = 8/93 (8%)
Query: 47 QFAGKLNDDNLSVDCKDKGIYFVESRVDSPLNEFLNQPDLFLINKLLRSEAGIRVAKIQ- 105
Q G+L +++V C + GI V++ +D PL EF D + L ++A R Q
Sbjct: 102 QMTGELGGIDIAV-C-NAGIVSVQAMLDMPLEEFQRIQDTNVTGVFLTAQAAARAMVDQG 159
Query: 106 -----VTTFECSGLIITFKNWAATACKNTEAAI 133
+TT SG II + C + A +
Sbjct: 160 LGGTIITTASMSGHIINIPQQVSHYCTSKAAVV 192
>pdb|4G22|A Chain A, Structure Of A Lys-Hct Mutant From Coffea Canephora
(Crystal Form 1)
pdb|4G22|B Chain B, Structure Of A Lys-Hct Mutant From Coffea Canephora
(Crystal Form 1)
Length = 439
Score = 32.3 bits (72), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 21/83 (25%), Positives = 41/83 (49%), Gaps = 9/83 (10%)
Query: 41 TLARFHQFAGKLN---DDNLSVDCKDKGIYFVESRVDSPLNEFLNQPDLFLINKLLRS-- 95
L F+ AG+L D + ++C +G+ FVE+ D +++F + + +L+ +
Sbjct: 68 ALVPFYPMAGRLKRDEDGRIEIECNGEGVLFVEAESDGVVDDFGDFAPTLELRRLIPAVD 127
Query: 96 -EAGIR---VAKIQVTTFECSGL 114
GI + +QVT F+ G+
Sbjct: 128 YSQGISSYALLVLQVTYFKXGGV 150
>pdb|3Q4T|A Chain A, Crystal Structure Of Activin Receptor Type-Iia (Acvr2a)
Kinase Domain In Complex With Dorsomorphin
pdb|3Q4T|B Chain B, Crystal Structure Of Activin Receptor Type-Iia (Acvr2a)
Kinase Domain In Complex With Dorsomorphin
pdb|3SOC|A Chain A, Crystal Structure Of Activin Receptor Type-Iia (Acvr2a)
Kinase Domain In Complex With A Quinazolin
pdb|3SOC|B Chain B, Crystal Structure Of Activin Receptor Type-Iia (Acvr2a)
Kinase Domain In Complex With A Quinazolin
pdb|4ASX|A Chain A, Crystal Structure Of Activin Receptor Type-Iia (Acvr2a)
Kinase Domain In Complex With Dihydro-Bauerine C
pdb|4ASX|B Chain B, Crystal Structure Of Activin Receptor Type-Iia (Acvr2a)
Kinase Domain In Complex With Dihydro-Bauerine C
Length = 322
Score = 28.9 bits (63), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 14/54 (25%), Positives = 26/54 (48%)
Query: 202 PTLLTHLVNLRRKARPPLSEYSMGKIVWMANALCTDDEPELDSLVCLLREAIKK 255
P +L +N +R A + Y+MG ++W + CT + +D + E I +
Sbjct: 202 PEVLEGAINFQRDAFLRIDMYAMGLVLWELASRCTAADGPVDEYMLPFEEEIGQ 255
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.322 0.136 0.417
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,660,760
Number of Sequences: 62578
Number of extensions: 215288
Number of successful extensions: 315
Number of sequences better than 100.0: 6
Number of HSP's better than 100.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 311
Number of HSP's gapped (non-prelim): 6
length of query: 268
length of database: 14,973,337
effective HSP length: 97
effective length of query: 171
effective length of database: 8,903,271
effective search space: 1522459341
effective search space used: 1522459341
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 50 (23.9 bits)