Query 035585
Match_columns 183
No_of_seqs 111 out of 1283
Neff 9.7
Searched_HMMs 46136
Date Fri Mar 29 04:17:33 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/035585.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/035585hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF00931 NB-ARC: NB-ARC domain 99.9 3.8E-22 8.3E-27 154.1 11.1 139 31-170 1-145 (287)
2 KOG4658 Apoptotic ATPase [Sign 99.9 1.1E-20 2.4E-25 163.6 16.5 155 21-177 154-313 (889)
3 PLN03210 Resistant to P. syrin 99.7 2.8E-17 6E-22 147.4 13.9 151 18-173 176-343 (1153)
4 PRK00411 cdc6 cell division co 99.5 3.3E-13 7.1E-18 108.8 14.0 119 21-139 25-151 (394)
5 TIGR02928 orc1/cdc6 family rep 99.5 1.3E-12 2.8E-17 104.3 14.7 115 24-138 13-141 (365)
6 COG1474 CDC6 Cdc6-related prot 99.4 6.3E-12 1.4E-16 100.0 14.7 142 27-168 18-170 (366)
7 PF13401 AAA_22: AAA domain; P 99.4 1.1E-12 2.3E-17 89.9 8.1 116 46-163 3-125 (131)
8 PF05729 NACHT: NACHT domain 99.4 7.4E-12 1.6E-16 88.7 9.5 114 48-166 1-132 (166)
9 cd00009 AAA The AAA+ (ATPases 99.3 2.1E-11 4.6E-16 84.1 9.8 123 29-165 1-131 (151)
10 PF01637 Arch_ATPase: Archaeal 99.3 4.5E-12 9.7E-17 94.6 6.5 110 28-139 1-131 (234)
11 PF13191 AAA_16: AAA ATPase do 99.2 7.1E-11 1.5E-15 85.3 9.3 60 27-88 1-63 (185)
12 TIGR03015 pepcterm_ATPase puta 99.2 3.8E-10 8.3E-15 86.4 12.9 93 44-139 40-136 (269)
13 PF05621 TniB: Bacterial TniB 99.2 2.2E-10 4.7E-15 87.9 10.8 117 22-138 33-157 (302)
14 PRK04841 transcriptional regul 99.2 2E-10 4.4E-15 101.4 11.7 138 18-164 6-162 (903)
15 PTZ00112 origin recognition co 99.2 7.6E-10 1.6E-14 95.1 13.2 119 21-139 750-882 (1164)
16 PLN03025 replication factor C 99.1 4.2E-10 9.2E-15 88.5 9.2 134 17-164 4-139 (319)
17 PF13173 AAA_14: AAA domain 99.1 2.3E-10 5E-15 78.3 6.6 103 47-169 2-104 (128)
18 PRK07003 DNA polymerase III su 99.1 7E-10 1.5E-14 94.3 10.2 147 18-167 8-162 (830)
19 PRK12402 replication factor C 99.1 1E-09 2.2E-14 86.6 10.2 71 16-86 5-75 (337)
20 COG2909 MalT ATP-dependent tra 99.1 1.5E-09 3.2E-14 92.4 11.2 143 17-165 10-171 (894)
21 PTZ00202 tuzin; Provisional 99.1 2.3E-09 5E-14 86.1 11.7 106 20-133 256-368 (550)
22 PRK00440 rfc replication facto 99.0 2.5E-09 5.4E-14 83.8 10.9 133 14-163 5-141 (319)
23 PF05496 RuvB_N: Holliday junc 99.0 2.6E-09 5.6E-14 78.8 10.1 64 11-74 9-77 (233)
24 PRK12323 DNA polymerase III su 99.0 3.2E-09 7E-14 89.1 11.0 145 17-165 7-165 (700)
25 COG2256 MGS1 ATPase related to 99.0 3.6E-09 7.8E-14 83.5 10.1 113 21-159 19-136 (436)
26 COG0488 Uup ATPase components 99.0 3E-09 6.5E-14 88.3 9.3 131 46-177 347-509 (530)
27 KOG0991 Replication factor C, 99.0 2.5E-09 5.4E-14 79.0 7.2 110 16-139 17-126 (333)
28 PRK14960 DNA polymerase III su 98.9 7.3E-09 1.6E-13 87.2 10.3 126 19-165 8-159 (702)
29 PRK13342 recombination factor 98.9 5.7E-09 1.2E-13 84.9 9.4 53 21-73 7-62 (413)
30 KOG0989 Replication factor C, 98.9 2.7E-09 5.9E-14 81.5 6.8 137 16-166 26-171 (346)
31 cd01128 rho_factor Transcripti 98.9 7.2E-09 1.6E-13 78.5 9.0 90 46-138 15-115 (249)
32 PRK14949 DNA polymerase III su 98.9 1.1E-08 2.5E-13 88.5 10.5 130 19-165 9-160 (944)
33 KOG2227 Pre-initiation complex 98.9 3.5E-08 7.7E-13 79.3 12.5 140 21-161 145-294 (529)
34 PRK08691 DNA polymerase III su 98.9 1.7E-08 3.8E-13 85.5 11.3 56 18-73 8-64 (709)
35 PRK14961 DNA polymerase III su 98.9 2.3E-08 5.1E-13 80.0 11.6 144 19-165 9-160 (363)
36 PRK04195 replication factor C 98.9 7.9E-09 1.7E-13 85.6 9.1 103 17-139 5-111 (482)
37 PRK14958 DNA polymerase III su 98.9 1.4E-08 3.1E-13 84.3 10.5 127 17-164 7-159 (509)
38 COG0488 Uup ATPase components 98.9 5.9E-09 1.3E-13 86.6 8.1 60 117-177 162-223 (530)
39 PRK14957 DNA polymerase III su 98.9 2.7E-08 5.9E-13 82.9 11.8 129 19-164 9-159 (546)
40 PRK14956 DNA polymerase III su 98.9 1.8E-08 3.9E-13 82.3 10.3 144 17-163 9-160 (484)
41 KOG2028 ATPase related to the 98.9 1.7E-08 3.7E-13 79.1 9.4 96 24-138 136-234 (554)
42 smart00382 AAA ATPases associa 98.9 9.8E-09 2.1E-13 70.0 7.3 91 47-140 2-92 (148)
43 PHA02544 44 clamp loader, smal 98.8 1.2E-08 2.5E-13 80.1 8.0 128 15-165 10-142 (316)
44 PF00004 AAA: ATPase family as 98.8 1.2E-08 2.6E-13 69.5 6.9 96 50-165 1-113 (132)
45 PRK14962 DNA polymerase III su 98.8 2.7E-08 5.9E-13 81.9 9.9 54 20-73 8-62 (472)
46 PRK07994 DNA polymerase III su 98.8 3.8E-08 8.1E-13 83.4 10.6 140 19-165 9-160 (647)
47 TIGR03420 DnaA_homol_Hda DnaA 98.8 7.8E-09 1.7E-13 77.2 5.8 55 31-87 22-76 (226)
48 PRK14951 DNA polymerase III su 98.8 4.8E-08 1E-12 82.5 10.8 142 18-163 8-163 (618)
49 PRK14964 DNA polymerase III su 98.8 4.8E-08 1E-12 80.4 10.5 127 20-164 7-156 (491)
50 CHL00095 clpC Clp protease ATP 98.8 3.7E-08 8E-13 86.4 10.4 100 26-138 179-283 (821)
51 PRK07764 DNA polymerase III su 98.8 3.6E-08 7.7E-13 85.9 10.1 129 20-165 9-161 (824)
52 PRK06645 DNA polymerase III su 98.8 6.6E-08 1.4E-12 80.1 11.0 59 15-73 10-69 (507)
53 TIGR02397 dnaX_nterm DNA polym 98.8 7.3E-08 1.6E-12 76.7 10.8 56 18-73 6-62 (355)
54 PRK14969 DNA polymerase III su 98.8 8.2E-08 1.8E-12 80.2 11.3 126 19-165 9-160 (527)
55 TIGR02639 ClpA ATP-dependent C 98.8 6.4E-08 1.4E-12 84.0 10.8 102 24-138 180-286 (731)
56 PRK05564 DNA polymerase III su 98.8 8E-08 1.7E-12 75.4 10.4 123 26-165 4-134 (313)
57 PRK10865 protein disaggregatio 98.8 4E-08 8.6E-13 86.3 9.4 102 24-138 176-283 (857)
58 PRK14952 DNA polymerase III su 98.8 8.9E-08 1.9E-12 80.5 11.0 54 20-73 7-61 (584)
59 PRK14963 DNA polymerase III su 98.8 7E-08 1.5E-12 80.1 10.2 53 21-73 9-62 (504)
60 PRK09111 DNA polymerase III su 98.8 6.2E-08 1.3E-12 81.8 10.0 143 17-163 15-171 (598)
61 PRK00080 ruvB Holliday junctio 98.8 2.2E-08 4.7E-13 79.1 6.7 54 20-73 19-77 (328)
62 TIGR00635 ruvB Holliday juncti 98.8 3.8E-08 8.2E-13 76.9 7.9 49 25-73 3-56 (305)
63 TIGR03345 VI_ClpV1 type VI sec 98.7 4.7E-08 1E-12 85.8 9.1 104 22-138 183-292 (852)
64 TIGR01242 26Sp45 26S proteasom 98.7 3.8E-08 8.2E-13 78.8 7.8 98 21-138 117-227 (364)
65 PRK14955 DNA polymerase III su 98.7 1.5E-07 3.2E-12 76.3 10.9 144 20-163 10-166 (397)
66 TIGR02881 spore_V_K stage V sp 98.7 5.1E-08 1.1E-12 74.6 7.5 28 46-73 41-68 (261)
67 PRK14959 DNA polymerase III su 98.7 2.1E-07 4.5E-12 78.5 11.5 57 17-73 7-64 (624)
68 PRK05896 DNA polymerase III su 98.7 1.7E-07 3.6E-12 78.7 10.5 58 16-73 6-64 (605)
69 PRK07471 DNA polymerase III su 98.7 7.9E-09 1.7E-13 82.5 2.5 144 22-166 15-183 (365)
70 TIGR00767 rho transcription te 98.7 1.8E-07 3.8E-12 74.9 10.1 93 45-138 166-267 (415)
71 PRK07940 DNA polymerase III su 98.7 1.4E-07 3.1E-12 76.0 9.7 120 26-165 5-158 (394)
72 COG1222 RPT1 ATP-dependent 26S 98.7 1.3E-07 2.9E-12 73.8 8.7 94 25-138 150-256 (406)
73 COG1121 ZnuC ABC-type Mn/Zn tr 98.7 1.2E-07 2.6E-12 71.5 8.2 60 117-178 148-213 (254)
74 PRK09376 rho transcription ter 98.7 1.4E-07 3.1E-12 75.2 9.0 92 46-138 168-268 (416)
75 PF05673 DUF815: Protein of un 98.7 1.4E-07 3E-12 70.6 8.4 125 16-168 17-155 (249)
76 TIGR03346 chaperone_ClpB ATP-d 98.7 1.2E-07 2.5E-12 83.5 9.0 102 24-138 171-278 (852)
77 PRK09112 DNA polymerase III su 98.7 7.4E-08 1.6E-12 76.6 6.9 141 22-165 19-182 (351)
78 TIGR00678 holB DNA polymerase 98.7 3.2E-07 7E-12 66.7 9.8 108 37-164 3-136 (188)
79 KOG2543 Origin recognition com 98.6 4.2E-07 9.1E-12 71.6 10.8 110 26-140 6-129 (438)
80 PRK14948 DNA polymerase III su 98.6 4.6E-07 9.9E-12 77.0 11.5 141 19-164 9-161 (620)
81 PRK14970 DNA polymerase III su 98.6 4.1E-07 8.9E-12 72.9 10.6 57 17-73 8-65 (367)
82 COG0470 HolB ATPase involved i 98.6 3.1E-07 6.7E-12 72.1 9.5 122 28-165 3-150 (325)
83 PRK13341 recombination factor 98.6 2.4E-07 5.1E-12 79.9 9.4 54 19-72 21-77 (725)
84 COG2255 RuvB Holliday junction 98.6 1.1E-07 2.5E-12 72.1 6.6 55 20-74 20-79 (332)
85 PRK03992 proteasome-activating 98.6 1.6E-07 3.6E-12 75.8 8.0 95 24-138 129-236 (389)
86 PRK14953 DNA polymerase III su 98.6 6.5E-07 1.4E-11 74.1 11.6 56 17-72 7-63 (486)
87 PRK06893 DNA replication initi 98.6 1.4E-07 3.1E-12 70.8 7.0 39 46-86 38-76 (229)
88 PRK07133 DNA polymerase III su 98.6 5.2E-07 1.1E-11 77.2 11.1 58 16-73 8-66 (725)
89 PRK11331 5-methylcytosine-spec 98.6 1.8E-07 3.9E-12 75.9 7.9 108 26-138 175-284 (459)
90 PRK14954 DNA polymerase III su 98.6 5.4E-07 1.2E-11 76.4 11.1 55 19-73 9-64 (620)
91 PRK14950 DNA polymerase III su 98.6 5.4E-07 1.2E-11 76.3 11.0 140 19-164 9-160 (585)
92 PF13177 DNA_pol3_delta2: DNA 98.6 7.2E-07 1.6E-11 63.4 9.8 123 30-170 1-149 (162)
93 cd03222 ABC_RNaseL_inhibitor T 98.6 1.3E-07 2.8E-12 68.2 6.0 107 45-172 23-140 (177)
94 PRK14965 DNA polymerase III su 98.6 4.8E-07 1E-11 76.5 10.1 55 19-73 9-64 (576)
95 COG1120 FepC ABC-type cobalami 98.6 2E-07 4.4E-12 70.5 7.0 61 116-176 146-211 (258)
96 TIGR03689 pup_AAA proteasome A 98.6 3.8E-07 8.3E-12 75.5 9.2 53 22-74 178-243 (512)
97 cd03214 ABC_Iron-Siderophores_ 98.6 2E-07 4.3E-12 67.4 6.8 125 46-173 24-167 (180)
98 cd03223 ABCD_peroxisomal_ALDP 98.6 2.4E-07 5.2E-12 66.1 7.0 120 46-173 26-156 (166)
99 PRK06305 DNA polymerase III su 98.6 7.8E-07 1.7E-11 73.1 10.8 54 20-73 11-65 (451)
100 PRK08451 DNA polymerase III su 98.6 7.6E-07 1.6E-11 74.1 10.4 125 19-164 7-157 (535)
101 PRK05563 DNA polymerase III su 98.6 9.1E-07 2E-11 74.5 11.0 137 20-163 10-158 (559)
102 KOG0062 ATPase component of AB 98.5 8E-08 1.7E-12 78.1 4.4 131 46-178 105-269 (582)
103 PRK11034 clpA ATP-dependent Cl 98.5 3.6E-07 7.8E-12 79.1 8.5 101 26-138 186-290 (758)
104 PRK08727 hypothetical protein; 98.5 4.4E-07 9.5E-12 68.3 8.0 59 25-85 18-77 (233)
105 TIGR00602 rad24 checkpoint pro 98.5 4.6E-07 1E-11 76.8 9.0 60 14-73 72-136 (637)
106 PRK10536 hypothetical protein; 98.5 9.4E-07 2E-11 66.9 9.7 137 23-164 52-213 (262)
107 KOG0734 AAA+-type ATPase conta 98.5 4.6E-07 9.9E-12 74.2 8.0 97 22-138 303-408 (752)
108 cd01120 RecA-like_NTPases RecA 98.5 5E-07 1.1E-11 63.4 7.4 38 50-89 2-39 (165)
109 cd03247 ABCC_cytochrome_bd The 98.5 4.5E-07 9.7E-12 65.4 7.2 115 46-169 27-162 (178)
110 COG2884 FtsE Predicted ATPase 98.5 3.8E-07 8.2E-12 65.6 6.4 50 125-174 154-207 (223)
111 PRK14971 DNA polymerase III su 98.5 1.4E-06 3E-11 74.1 11.0 57 16-72 7-64 (614)
112 cd03228 ABCC_MRP_Like The MRP 98.5 3.4E-07 7.3E-12 65.6 6.3 113 45-169 26-160 (171)
113 cd03216 ABC_Carb_Monos_I This 98.5 1.9E-07 4.1E-12 66.4 4.9 121 46-173 25-151 (163)
114 KOG0927 Predicted transporter 98.5 2.9E-07 6.3E-12 75.3 6.3 125 46-171 415-573 (614)
115 CHL00181 cbbX CbbX; Provisiona 98.5 1.8E-06 3.9E-11 67.0 10.4 26 48-73 60-85 (287)
116 cd03230 ABC_DR_subfamily_A Thi 98.5 7.4E-07 1.6E-11 64.0 7.6 115 46-173 25-164 (173)
117 COG4608 AppF ABC-type oligopep 98.5 4.4E-07 9.4E-12 68.7 6.3 124 46-172 38-178 (268)
118 COG0466 Lon ATP-dependent Lon 98.5 7.2E-07 1.6E-11 75.3 8.0 50 25-74 322-377 (782)
119 TIGR02858 spore_III_AA stage I 98.5 1.5E-06 3.3E-11 66.6 9.3 118 44-168 108-233 (270)
120 KOG0733 Nuclear AAA ATPase (VC 98.5 1.2E-06 2.6E-11 72.8 9.1 92 26-137 190-293 (802)
121 cd03238 ABC_UvrA The excision 98.5 4.8E-07 1E-11 65.2 6.0 112 45-168 19-153 (176)
122 PTZ00454 26S protease regulato 98.4 2.1E-06 4.4E-11 69.5 10.2 98 21-138 140-250 (398)
123 CHL00176 ftsH cell division pr 98.4 1.2E-06 2.6E-11 74.6 9.1 72 47-138 216-287 (638)
124 PRK06647 DNA polymerase III su 98.4 2.7E-06 5.8E-11 71.6 11.0 139 19-164 9-159 (563)
125 COG1373 Predicted ATPase (AAA+ 98.4 7.3E-07 1.6E-11 72.1 7.4 115 30-168 21-135 (398)
126 PRK08181 transposase; Validate 98.4 7.7E-07 1.7E-11 68.2 7.0 75 46-138 105-179 (269)
127 PF00448 SRP54: SRP54-type pro 98.4 2.2E-06 4.7E-11 62.9 9.1 57 47-105 1-58 (196)
128 PRK07399 DNA polymerase III su 98.4 2.4E-06 5.2E-11 67.1 9.7 48 26-73 4-52 (314)
129 COG2812 DnaX DNA polymerase II 98.4 2.5E-07 5.5E-12 76.3 4.3 138 20-165 10-160 (515)
130 cd03283 ABC_MutS-like MutS-lik 98.4 2E-06 4.4E-11 63.2 8.6 110 48-170 26-154 (199)
131 COG1124 DppF ABC-type dipeptid 98.4 1.7E-06 3.6E-11 64.5 8.1 51 124-174 157-212 (252)
132 cd03221 ABCF_EF-3 ABCF_EF-3 E 98.4 1.3E-06 2.8E-11 60.9 7.2 107 46-172 25-135 (144)
133 TIGR03346 chaperone_ClpB ATP-d 98.4 7.9E-07 1.7E-11 78.4 7.5 132 25-163 564-717 (852)
134 cd03246 ABCC_Protease_Secretio 98.4 7.8E-07 1.7E-11 63.9 6.2 113 46-168 27-160 (173)
135 TIGR02880 cbbX_cfxQ probable R 98.4 3.2E-06 6.9E-11 65.5 9.8 27 48-74 59-85 (284)
136 KOG0733 Nuclear AAA ATPase (VC 98.4 2.3E-06 5E-11 71.2 9.3 104 45-168 543-661 (802)
137 PF00308 Bac_DnaA: Bacterial d 98.4 9.2E-07 2E-11 66.0 6.4 101 47-163 34-139 (219)
138 PF04665 Pox_A32: Poxvirus A32 98.4 2.6E-06 5.6E-11 64.0 8.7 36 48-85 14-49 (241)
139 PRK12608 transcription termina 98.4 4.3E-06 9.2E-11 66.6 10.3 103 36-138 121-232 (380)
140 cd03229 ABC_Class3 This class 98.4 6.8E-07 1.5E-11 64.5 5.3 122 46-174 25-171 (178)
141 TIGR02640 gas_vesic_GvpN gas v 98.4 2.8E-06 6.1E-11 65.0 8.9 53 33-92 9-61 (262)
142 PRK08903 DnaA regulatory inact 98.4 1.5E-06 3.2E-11 65.1 7.1 52 34-87 28-80 (227)
143 PF07693 KAP_NTPase: KAP famil 98.4 1.1E-05 2.4E-10 63.4 12.4 44 31-74 1-47 (325)
144 TIGR02639 ClpA ATP-dependent C 98.4 1.9E-06 4.1E-11 74.9 8.6 104 25-138 453-565 (731)
145 COG1126 GlnQ ABC-type polar am 98.4 1.5E-06 3.2E-11 63.8 6.6 55 125-179 153-211 (240)
146 PTZ00361 26 proteosome regulat 98.4 1.3E-06 2.7E-11 71.3 7.0 98 21-138 178-288 (438)
147 cd03281 ABC_MSH5_euk MutS5 hom 98.4 6.7E-07 1.4E-11 66.4 4.9 23 47-69 29-51 (213)
148 PRK10865 protein disaggregatio 98.3 1.6E-06 3.5E-11 76.4 8.0 107 25-138 567-682 (857)
149 TIGR02237 recomb_radB DNA repa 98.3 7.9E-06 1.7E-10 60.3 10.6 88 46-137 11-108 (209)
150 COG2274 SunT ABC-type bacterio 98.3 9.8E-07 2.1E-11 75.9 6.2 54 119-172 620-676 (709)
151 cd00267 ABC_ATPase ABC (ATP-bi 98.3 1.4E-06 3.1E-11 61.5 5.9 119 46-173 24-149 (157)
152 CHL00095 clpC Clp protease ATP 98.3 2E-06 4.3E-11 75.7 7.9 133 25-164 508-662 (821)
153 TIGR01241 FtsH_fam ATP-depende 98.3 1.9E-06 4.1E-11 71.8 7.4 96 23-138 52-159 (495)
154 KOG1514 Origin recognition com 98.3 8.3E-06 1.8E-10 68.8 10.7 136 24-161 394-546 (767)
155 TIGR03345 VI_ClpV1 type VI sec 98.3 1.4E-06 3.1E-11 76.6 6.6 131 26-163 566-718 (852)
156 PRK06526 transposase; Provisio 98.3 1.1E-06 2.4E-11 66.9 5.1 29 46-74 97-125 (254)
157 PRK15064 ABC transporter ATP-b 98.3 3.3E-06 7E-11 71.0 8.4 27 46-72 26-52 (530)
158 cd03235 ABC_Metallic_Cations A 98.3 3.6E-06 7.8E-11 62.4 7.7 27 46-72 24-50 (213)
159 COG0542 clpA ATP-binding subun 98.3 1.2E-06 2.5E-11 75.3 5.7 101 25-138 169-274 (786)
160 PRK12377 putative replication 98.3 1E-05 2.2E-10 61.4 10.2 74 46-136 100-173 (248)
161 cd03215 ABC_Carb_Monos_II This 98.3 3.3E-06 7.1E-11 61.1 7.2 27 46-72 25-51 (182)
162 KOG0739 AAA+-type ATPase [Post 98.3 5.3E-06 1.1E-10 63.8 8.3 73 46-138 165-237 (439)
163 COG1136 SalX ABC-type antimicr 98.3 1.1E-06 2.4E-11 65.3 4.6 49 124-172 158-211 (226)
164 PRK08116 hypothetical protein; 98.3 1.5E-05 3.2E-10 61.3 10.9 101 48-163 115-220 (268)
165 PF14516 AAA_35: AAA-like doma 98.3 3.4E-05 7.3E-10 61.1 13.2 115 22-139 7-140 (331)
166 PRK07952 DNA replication prote 98.3 1.6E-05 3.4E-10 60.2 10.8 89 34-138 84-174 (244)
167 KOG0744 AAA+-type ATPase [Post 98.3 1.5E-06 3.3E-11 67.2 5.3 28 47-74 177-204 (423)
168 KOG0727 26S proteasome regulat 98.3 2.4E-06 5.2E-11 64.3 6.1 74 45-138 187-260 (408)
169 cd01131 PilT Pilus retraction 98.3 1.3E-06 2.9E-11 64.1 4.8 112 48-168 2-113 (198)
170 PRK11147 ABC transporter ATPas 98.3 5.1E-06 1.1E-10 71.2 9.0 49 125-175 173-224 (635)
171 PRK10636 putative ABC transpor 98.3 3.5E-06 7.7E-11 72.2 8.0 50 124-175 165-217 (638)
172 cd03225 ABC_cobalt_CbiO_domain 98.3 5.2E-06 1.1E-10 61.4 7.9 27 46-72 26-52 (211)
173 PRK04296 thymidine kinase; Pro 98.3 7.6E-07 1.7E-11 65.0 3.3 110 48-165 3-117 (190)
174 cd03226 ABC_cobalt_CbiO_domain 98.3 4.7E-06 1E-10 61.4 7.6 27 46-72 25-51 (205)
175 PRK08084 DNA replication initi 98.3 7.2E-06 1.6E-10 61.8 8.7 52 33-86 31-82 (235)
176 PRK11248 tauB taurine transpor 98.3 6.4E-06 1.4E-10 62.8 8.4 27 46-72 26-52 (255)
177 PRK08058 DNA polymerase III su 98.3 7.1E-06 1.5E-10 64.9 8.9 130 29-165 8-151 (329)
178 COG1484 DnaC DNA replication p 98.2 1.3E-05 2.8E-10 61.1 9.9 90 31-137 88-178 (254)
179 PRK09183 transposase/IS protei 98.2 1.1E-06 2.5E-11 67.1 4.1 37 46-84 101-137 (259)
180 PRK14088 dnaA chromosomal repl 98.2 1.4E-05 3E-10 65.6 10.7 77 47-138 130-206 (440)
181 PRK10636 putative ABC transpor 98.2 7.2E-06 1.6E-10 70.3 9.4 126 46-175 337-498 (638)
182 cd03259 ABC_Carb_Solutes_like 98.2 5.4E-06 1.2E-10 61.4 7.5 27 46-72 25-51 (213)
183 cd03243 ABC_MutS_homologs The 98.2 1E-06 2.2E-11 64.8 3.6 23 47-69 29-51 (202)
184 PRK14722 flhF flagellar biosyn 98.2 8E-06 1.7E-10 65.3 8.8 89 46-136 136-225 (374)
185 PRK11034 clpA ATP-dependent Cl 98.2 3.1E-06 6.8E-11 73.4 7.0 104 25-138 457-569 (758)
186 PRK14087 dnaA chromosomal repl 98.2 2E-06 4.3E-11 70.7 5.5 103 47-163 141-248 (450)
187 COG3899 Predicted ATPase [Gene 98.2 1.8E-05 3.9E-10 69.8 11.8 47 28-74 2-51 (849)
188 PRK09544 znuC high-affinity zi 98.2 6.1E-06 1.3E-10 62.8 7.8 27 46-72 29-55 (251)
189 TIGR01188 drrA daunorubicin re 98.2 5.4E-06 1.2E-10 64.8 7.7 27 46-72 18-44 (302)
190 cd03237 ABC_RNaseL_inhibitor_d 98.2 4.8E-06 1E-10 63.2 7.1 128 46-173 24-185 (246)
191 PLN00020 ribulose bisphosphate 98.2 4.8E-06 1.1E-10 66.0 7.2 30 45-74 146-175 (413)
192 KOG1969 DNA replication checkp 98.2 4.5E-06 9.7E-11 70.7 7.3 76 45-139 324-400 (877)
193 PRK11889 flhF flagellar biosyn 98.2 2.1E-05 4.5E-10 63.2 10.7 89 46-136 240-330 (436)
194 cd03263 ABC_subfamily_A The AB 98.2 3.6E-06 7.7E-11 62.7 6.2 27 46-72 27-53 (220)
195 KOG0736 Peroxisome assembly fa 98.2 6E-06 1.3E-10 70.4 8.0 72 47-138 705-776 (953)
196 COG4615 PvdE ABC-type sideroph 98.2 2.4E-06 5.1E-11 68.0 5.3 29 46-74 348-376 (546)
197 TIGR00960 3a0501s02 Type II (G 98.2 3.8E-06 8.3E-11 62.4 6.2 27 46-72 28-54 (216)
198 COG3910 Predicted ATPase [Gene 98.2 5.5E-06 1.2E-10 59.6 6.6 27 45-71 35-61 (233)
199 PRK14269 phosphate ABC transpo 98.2 1.1E-05 2.4E-10 61.2 8.6 26 46-71 27-52 (246)
200 cd03282 ABC_MSH4_euk MutS4 hom 98.2 3.6E-06 7.7E-11 62.1 5.8 118 46-171 28-158 (204)
201 COG4618 ArpD ABC-type protease 98.2 2.3E-06 4.9E-11 69.8 5.0 48 125-172 489-540 (580)
202 PRK06067 flagellar accessory p 98.2 1.7E-05 3.7E-10 59.7 9.5 115 46-165 24-166 (234)
203 PRK13543 cytochrome c biogenes 98.2 1.1E-05 2.4E-10 59.9 8.3 27 46-72 36-62 (214)
204 cd03269 ABC_putative_ATPase Th 98.2 7.1E-06 1.5E-10 60.7 7.3 27 46-72 25-51 (210)
205 KOG2004 Mitochondrial ATP-depe 98.2 5.5E-06 1.2E-10 70.1 7.3 102 25-138 410-517 (906)
206 COG0542 clpA ATP-binding subun 98.2 3.3E-06 7.3E-11 72.6 6.2 131 24-162 489-642 (786)
207 cd03287 ABC_MSH3_euk MutS3 hom 98.2 2.2E-06 4.8E-11 64.0 4.6 111 46-169 30-159 (222)
208 PRK08533 flagellar accessory p 98.2 3.8E-05 8.3E-10 57.7 11.2 88 46-138 23-129 (230)
209 COG1134 TagH ABC-type polysacc 98.2 1.7E-06 3.7E-11 64.5 3.8 134 46-179 52-222 (249)
210 cd03217 ABC_FeS_Assembly ABC-t 98.2 3.7E-06 8E-11 61.8 5.6 25 46-70 25-49 (200)
211 PRK11247 ssuB aliphatic sulfon 98.2 8.4E-06 1.8E-10 62.3 7.8 27 46-72 37-63 (257)
212 TIGR02903 spore_lon_C ATP-depe 98.2 1.4E-05 3E-10 68.2 9.7 53 21-73 149-201 (615)
213 PRK08939 primosomal protein Dn 98.2 2.5E-05 5.5E-10 61.1 10.5 89 30-136 135-227 (306)
214 TIGR01243 CDC48 AAA family ATP 98.2 6.6E-06 1.4E-10 71.7 7.9 95 24-138 176-283 (733)
215 smart00534 MUTSac ATPase domai 98.2 1.2E-06 2.7E-11 63.6 3.0 21 49-69 1-21 (185)
216 COG1131 CcmA ABC-type multidru 98.2 4.1E-06 9E-11 65.2 5.9 28 46-73 30-57 (293)
217 cd03278 ABC_SMC_barmotin Barmo 98.2 8.6E-06 1.9E-10 59.8 7.3 24 48-71 23-46 (197)
218 TIGR03499 FlhF flagellar biosy 98.2 1.9E-05 4.1E-10 61.2 9.5 88 46-135 193-281 (282)
219 cd01123 Rad51_DMC1_radA Rad51_ 98.2 2.6E-05 5.6E-10 58.6 10.0 91 46-137 18-126 (235)
220 TIGR02868 CydC thiol reductant 98.2 5.9E-06 1.3E-10 69.3 7.1 28 45-72 359-386 (529)
221 smart00763 AAA_PrkA PrkA AAA d 98.2 4.4E-06 9.6E-11 66.2 5.8 47 27-73 52-104 (361)
222 PRK14259 phosphate ABC transpo 98.2 1.3E-05 2.8E-10 61.6 8.3 26 46-71 38-63 (269)
223 cd03233 ABC_PDR_domain1 The pl 98.2 1.7E-05 3.7E-10 58.4 8.6 28 45-72 31-58 (202)
224 TIGR02012 tigrfam_recA protein 98.2 1.6E-05 3.4E-10 62.4 8.7 85 46-138 54-145 (321)
225 cd03292 ABC_FtsE_transporter F 98.1 8.5E-06 1.8E-10 60.3 7.0 27 46-72 26-52 (214)
226 cd03227 ABC_Class2 ABC-type Cl 98.1 1.3E-05 2.9E-10 56.9 7.6 24 48-71 22-45 (162)
227 PRK05642 DNA replication initi 98.1 2.5E-05 5.4E-10 58.9 9.4 38 47-86 45-82 (234)
228 PRK12723 flagellar biosynthesi 98.1 3.6E-05 7.8E-10 62.0 10.8 90 46-137 173-265 (388)
229 PRK13537 nodulation ABC transp 98.1 8E-06 1.7E-10 64.0 7.0 27 46-72 32-58 (306)
230 CHL00195 ycf46 Ycf46; Provisio 98.1 1.1E-05 2.3E-10 66.9 7.9 73 46-138 258-330 (489)
231 PRK14235 phosphate transporter 98.1 1.6E-05 3.4E-10 61.1 8.4 27 46-72 44-70 (267)
232 cd03264 ABC_drug_resistance_li 98.1 6.7E-06 1.4E-10 60.8 6.2 24 49-72 27-50 (211)
233 PF02562 PhoH: PhoH-like prote 98.1 5.3E-06 1.2E-10 61.0 5.5 130 31-165 5-157 (205)
234 cd03293 ABC_NrtD_SsuB_transpor 98.1 2E-05 4.3E-10 58.7 8.7 27 46-72 29-55 (220)
235 TIGR00362 DnaA chromosomal rep 98.1 1.4E-05 3E-10 65.0 8.4 76 47-138 136-211 (405)
236 TIGR03740 galliderm_ABC gallid 98.1 1.3E-05 2.9E-10 59.7 7.8 27 46-72 25-51 (223)
237 PRK14265 phosphate ABC transpo 98.1 1.4E-05 3E-10 61.6 8.0 26 46-71 45-70 (274)
238 PRK14974 cell division protein 98.1 4.2E-05 9.1E-10 60.5 10.8 91 46-138 139-234 (336)
239 cd03258 ABC_MetN_methionine_tr 98.1 7E-06 1.5E-10 61.6 6.2 27 46-72 30-56 (233)
240 PRK14264 phosphate ABC transpo 98.1 1.8E-05 3.8E-10 62.0 8.6 26 46-71 70-95 (305)
241 COG1117 PstB ABC-type phosphat 98.1 4.3E-06 9.3E-11 61.3 4.7 40 27-68 15-54 (253)
242 TIGR03522 GldA_ABC_ATP gliding 98.1 7.3E-06 1.6E-10 64.0 6.4 27 46-72 27-53 (301)
243 PRK09361 radB DNA repair and r 98.1 4.2E-05 9E-10 57.2 10.3 39 46-86 22-60 (225)
244 PF07724 AAA_2: AAA domain (Cd 98.1 3.5E-06 7.5E-11 60.4 4.3 42 47-90 3-45 (171)
245 cd03369 ABCC_NFT1 Domain 2 of 98.1 2.5E-05 5.4E-10 57.6 8.9 26 46-71 33-58 (207)
246 PF01695 IstB_IS21: IstB-like 98.1 2.3E-05 5E-10 56.6 8.5 75 46-138 46-120 (178)
247 PRK13540 cytochrome c biogenes 98.1 7.5E-06 1.6E-10 60.1 6.1 27 46-72 26-52 (200)
248 PRK13538 cytochrome c biogenes 98.1 1.7E-05 3.6E-10 58.4 8.0 27 46-72 26-52 (204)
249 cd03268 ABC_BcrA_bacitracin_re 98.1 6.3E-06 1.4E-10 60.8 5.7 27 46-72 25-51 (208)
250 cd03298 ABC_ThiQ_thiamine_tran 98.1 6.5E-06 1.4E-10 60.9 5.8 27 46-72 23-49 (211)
251 cd01124 KaiC KaiC is a circadi 98.1 4.1E-05 8.9E-10 55.3 9.9 37 50-88 2-38 (187)
252 cd00561 CobA_CobO_BtuR ATP:cor 98.1 3.6E-05 7.9E-10 54.4 9.2 121 48-171 3-147 (159)
253 cd03213 ABCG_EPDR ABCG transpo 98.1 2.6E-06 5.6E-11 62.3 3.5 27 45-71 33-59 (194)
254 cd03232 ABC_PDR_domain2 The pl 98.1 6.2E-06 1.3E-10 60.2 5.5 25 46-70 32-56 (192)
255 PRK11147 ABC transporter ATPas 98.1 2.3E-05 4.9E-10 67.3 9.6 129 46-176 344-509 (635)
256 TIGR01184 ntrCD nitrate transp 98.1 1.3E-05 2.8E-10 60.2 7.2 27 46-72 10-36 (230)
257 cd03244 ABCC_MRP_domain2 Domai 98.1 3.2E-05 6.9E-10 57.6 9.3 26 46-71 29-54 (221)
258 PRK11819 putative ABC transpor 98.1 8.7E-06 1.9E-10 68.8 6.9 28 46-73 32-59 (556)
259 TIGR00763 lon ATP-dependent pr 98.1 1.2E-05 2.5E-10 70.5 7.9 47 27-73 321-373 (775)
260 KOG0726 26S proteasome regulat 98.1 2.9E-05 6.3E-10 59.6 9.0 101 16-136 175-288 (440)
261 PRK15056 manganese/iron transp 98.1 2.2E-05 4.8E-10 60.4 8.6 26 46-71 32-57 (272)
262 PRK13409 putative ATPase RIL; 98.1 2.4E-05 5.3E-10 66.5 9.5 126 46-173 364-523 (590)
263 KOG0927 Predicted transporter 98.1 8.2E-06 1.8E-10 67.1 6.4 52 125-177 238-292 (614)
264 cd03220 ABC_KpsT_Wzt ABC_KpsT_ 98.1 3.5E-05 7.5E-10 57.7 9.4 27 46-72 47-73 (224)
265 cd03266 ABC_NatA_sodium_export 98.1 8.9E-06 1.9E-10 60.4 6.2 27 46-72 30-56 (218)
266 PRK12727 flagellar biosynthesi 98.1 3.8E-05 8.2E-10 63.8 10.2 89 46-136 349-438 (559)
267 cd03280 ABC_MutS2 MutS2 homolo 98.1 3.9E-06 8.5E-11 61.7 4.2 21 48-68 29-49 (200)
268 cd03254 ABCC_Glucan_exporter_l 98.1 1.9E-05 4.1E-10 59.1 8.0 27 46-72 28-54 (229)
269 KOG0066 eIF2-interacting prote 98.1 2.7E-06 5.9E-11 68.6 3.5 120 48-168 614-765 (807)
270 cd01393 recA_like RecA is a b 98.1 5.1E-05 1.1E-09 56.6 10.2 46 46-91 18-67 (226)
271 cd03262 ABC_HisP_GlnQ_permease 98.1 1.5E-05 3.4E-10 58.9 7.4 27 46-72 25-51 (213)
272 cd03245 ABCC_bacteriocin_expor 98.1 2E-05 4.3E-10 58.6 7.9 27 45-71 28-54 (220)
273 PF13207 AAA_17: AAA domain; P 98.1 4E-06 8.7E-11 56.3 3.8 24 49-72 1-24 (121)
274 cd00983 recA RecA is a bacter 98.1 2.4E-05 5.2E-10 61.5 8.6 88 46-137 54-144 (325)
275 cd03301 ABC_MalK_N The N-termi 98.1 6E-06 1.3E-10 61.1 5.0 27 46-72 25-51 (213)
276 PRK10908 cell division protein 98.1 1.2E-05 2.7E-10 59.9 6.7 27 46-72 27-53 (222)
277 PRK06921 hypothetical protein; 98.1 3.4E-05 7.4E-10 59.2 9.2 72 46-136 116-187 (266)
278 PRK10744 pstB phosphate transp 98.1 1.8E-05 3.9E-10 60.5 7.6 26 46-71 38-63 (260)
279 COG1066 Sms Predicted ATP-depe 98.1 2E-05 4.2E-10 63.0 7.9 87 46-138 92-180 (456)
280 KOG2228 Origin recognition com 98.1 1.8E-05 4E-10 61.7 7.6 142 24-167 22-185 (408)
281 COG1223 Predicted ATPase (AAA+ 98.1 2.1E-05 4.6E-10 59.4 7.7 123 26-168 121-268 (368)
282 PRK13409 putative ATPase RIL; 98.1 2.1E-05 4.6E-10 66.8 8.7 27 46-72 98-124 (590)
283 cd01121 Sms Sms (bacterial rad 98.1 1.7E-05 3.8E-10 63.6 7.8 88 46-138 81-170 (372)
284 TIGR02673 FtsE cell division A 98.1 1.1E-05 2.4E-10 59.7 6.3 26 46-71 27-52 (214)
285 TIGR01243 CDC48 AAA family ATP 98.1 3.2E-05 6.9E-10 67.5 10.0 93 26-138 453-558 (733)
286 cd03295 ABC_OpuCA_Osmoprotecti 98.1 2.7E-05 5.8E-10 58.9 8.5 27 46-72 26-52 (242)
287 PRK13651 cobalt transporter AT 98.1 9.8E-06 2.1E-10 63.4 6.2 26 46-71 32-57 (305)
288 PRK09580 sufC cysteine desulfu 98.1 2.6E-05 5.5E-10 59.1 8.4 26 46-71 26-51 (248)
289 cd03284 ABC_MutS1 MutS1 homolo 98.1 6.1E-06 1.3E-10 61.4 4.8 23 47-69 30-52 (216)
290 PRK14086 dnaA chromosomal repl 98.1 8.7E-06 1.9E-10 68.7 6.2 100 48-163 315-419 (617)
291 PRK14247 phosphate ABC transpo 98.1 1.9E-05 4.1E-10 60.0 7.6 27 46-72 28-54 (250)
292 cd03253 ABCC_ATM1_transporter 98.1 2.3E-05 5E-10 58.9 8.0 27 46-72 26-52 (236)
293 PRK09270 nucleoside triphospha 98.1 4.8E-05 1.1E-09 57.1 9.7 30 45-74 31-60 (229)
294 TIGR03411 urea_trans_UrtD urea 98.1 2.2E-05 4.8E-10 59.3 7.9 26 46-71 27-52 (242)
295 PRK07261 topology modulation p 98.1 1.5E-05 3.2E-10 57.2 6.6 25 49-73 2-26 (171)
296 cd03265 ABC_DrrA DrrA is the A 98.1 9.2E-06 2E-10 60.5 5.8 27 46-72 25-51 (220)
297 TIGR03771 anch_rpt_ABC anchore 98.1 2.3E-05 5E-10 58.5 7.9 27 46-72 5-31 (223)
298 cd03249 ABC_MTABC3_MDL1_MDL2 M 98.1 2.7E-05 5.8E-10 58.7 8.3 28 45-72 27-54 (238)
299 PRK13647 cbiO cobalt transport 98.1 2.4E-05 5.2E-10 60.3 8.2 27 46-72 30-56 (274)
300 PRK09536 btuD corrinoid ABC tr 98.1 3.8E-05 8.3E-10 62.3 9.6 49 124-174 155-209 (402)
301 PRK11153 metN DL-methionine tr 98.1 8E-06 1.7E-10 65.0 5.6 27 46-72 30-56 (343)
302 PRK09354 recA recombinase A; P 98.1 3.3E-05 7.1E-10 61.2 9.0 89 46-138 59-150 (349)
303 PRK13657 cyclic beta-1,2-gluca 98.1 1.8E-05 3.9E-10 67.3 8.1 28 45-72 359-386 (588)
304 KOG0738 AAA+-type ATPase [Post 98.1 9E-06 1.9E-10 64.5 5.7 72 47-138 245-316 (491)
305 PRK14275 phosphate ABC transpo 98.1 3.4E-05 7.3E-10 59.9 8.9 25 46-70 64-88 (286)
306 KOG0730 AAA+-type ATPase [Post 98.1 2.5E-05 5.4E-10 65.6 8.6 74 45-138 466-539 (693)
307 PRK13546 teichoic acids export 98.1 1.4E-05 3E-10 61.4 6.7 28 46-73 49-76 (264)
308 PRK13541 cytochrome c biogenes 98.1 8.6E-06 1.9E-10 59.6 5.3 27 46-72 25-51 (195)
309 PRK14248 phosphate ABC transpo 98.1 2.2E-05 4.9E-10 60.2 7.9 26 46-71 46-71 (268)
310 PRK11176 lipid transporter ATP 98.1 8.9E-06 1.9E-10 69.1 6.2 28 46-73 368-395 (582)
311 TIGR03375 type_I_sec_LssB type 98.1 1.3E-05 2.8E-10 69.5 7.3 28 45-72 489-516 (694)
312 PRK05707 DNA polymerase III su 98.1 4.4E-05 9.6E-10 60.3 9.6 114 46-166 21-148 (328)
313 PRK14250 phosphate ABC transpo 98.1 1.6E-05 3.6E-10 60.0 7.0 27 46-72 28-54 (241)
314 PRK00149 dnaA chromosomal repl 98.1 2.2E-05 4.8E-10 64.7 8.3 76 47-138 148-223 (450)
315 PF13481 AAA_25: AAA domain; P 98.1 2.3E-05 4.9E-10 57.0 7.5 43 47-89 32-82 (193)
316 PRK14237 phosphate transporter 98.1 2.6E-05 5.6E-10 59.9 8.1 27 46-72 45-71 (267)
317 TIGR02314 ABC_MetN D-methionin 98.1 8.1E-06 1.8E-10 64.9 5.5 50 125-174 157-211 (343)
318 cd03267 ABC_NatA_like Similar 98.0 4.4E-05 9.5E-10 57.5 9.2 27 46-72 46-72 (236)
319 cd01394 radB RadB. The archaea 98.0 5.3E-05 1.2E-09 56.3 9.5 41 46-88 18-58 (218)
320 PRK10771 thiQ thiamine transpo 98.0 1.4E-05 3E-10 60.0 6.5 27 46-72 24-50 (232)
321 cd03252 ABCC_Hemolysin The ABC 98.0 5.4E-05 1.2E-09 57.0 9.7 27 45-71 26-52 (237)
322 PF05970 PIF1: PIF1-like helic 98.0 8.9E-06 1.9E-10 65.2 5.7 99 33-136 8-112 (364)
323 PRK13652 cbiO cobalt transport 98.0 1.2E-05 2.5E-10 62.2 6.1 27 46-72 29-55 (277)
324 PRK14268 phosphate ABC transpo 98.0 3.7E-05 8.1E-10 58.7 8.8 26 46-71 37-62 (258)
325 COG2607 Predicted ATPase (AAA+ 98.0 3.1E-05 6.8E-10 57.8 8.0 49 26-74 60-112 (287)
326 PRK05541 adenylylsulfate kinas 98.0 4.9E-05 1.1E-09 54.6 9.0 37 45-83 5-41 (176)
327 KOG0731 AAA+-type ATPase conta 98.0 1.6E-05 3.5E-10 68.1 7.4 96 23-138 311-415 (774)
328 PRK11288 araG L-arabinose tran 98.0 1.9E-05 4.1E-10 65.9 7.8 51 125-175 413-467 (501)
329 PRK13634 cbiO cobalt transport 98.0 1.7E-05 3.7E-10 61.6 7.0 27 46-72 32-58 (290)
330 PRK13536 nodulation factor exp 98.0 1.4E-05 3E-10 63.5 6.6 27 46-72 66-92 (340)
331 cd03115 SRP The signal recogni 98.0 3.7E-05 7.9E-10 55.1 8.2 37 49-87 2-38 (173)
332 PRK15112 antimicrobial peptide 98.0 1.6E-05 3.4E-10 61.1 6.7 27 46-72 38-64 (267)
333 PRK14274 phosphate ABC transpo 98.0 3.1E-05 6.8E-10 59.1 8.3 26 46-71 37-62 (259)
334 PLN03073 ABC transporter F fam 98.0 2.3E-05 5.1E-10 67.9 8.4 126 46-173 534-693 (718)
335 TIGR00972 3a0107s01c2 phosphat 98.0 1.6E-05 3.5E-10 60.2 6.7 27 46-72 26-52 (247)
336 cd03236 ABC_RNaseL_inhibitor_d 98.0 4.6E-05 1E-09 58.1 9.1 28 45-72 24-51 (255)
337 PRK15064 ABC transporter ATP-b 98.0 2.7E-05 5.9E-10 65.4 8.6 126 46-173 344-504 (530)
338 PF14532 Sigma54_activ_2: Sigm 98.0 2.4E-06 5.2E-11 59.1 1.9 44 30-73 2-47 (138)
339 COG1122 CbiO ABC-type cobalt t 98.0 1.9E-05 4.2E-10 59.4 6.9 28 46-73 29-56 (235)
340 PRK10619 histidine/lysine/argi 98.0 1.2E-05 2.6E-10 61.3 5.9 27 46-72 30-56 (257)
341 TIGR03796 NHPM_micro_ABC1 NHPM 98.0 2.8E-05 6E-10 67.6 8.8 28 45-72 503-530 (710)
342 cd03294 ABC_Pro_Gly_Bertaine T 98.0 2.2E-05 4.8E-10 60.4 7.3 27 46-72 49-75 (269)
343 TIGR00958 3a01208 Conjugate Tr 98.0 5E-05 1.1E-09 66.1 10.3 29 45-73 505-533 (711)
344 KOG0729 26S proteasome regulat 98.0 4.5E-05 9.8E-10 57.9 8.7 88 29-136 180-280 (435)
345 PRK12726 flagellar biosynthesi 98.0 4.7E-05 1E-09 60.9 9.2 90 46-137 205-296 (407)
346 cd03250 ABCC_MRP_domain1 Domai 98.0 6E-05 1.3E-09 55.5 9.3 29 45-73 29-57 (204)
347 COG1419 FlhF Flagellar GTP-bin 98.0 8.8E-05 1.9E-09 59.4 10.7 89 46-136 202-291 (407)
348 PRK00771 signal recognition pa 98.0 0.00011 2.5E-09 60.1 11.7 87 46-136 94-185 (437)
349 PRK13645 cbiO cobalt transport 98.0 1.9E-05 4E-10 61.4 6.9 27 46-72 36-62 (289)
350 PRK06696 uridine kinase; Valid 98.0 1.2E-05 2.5E-10 60.2 5.5 44 30-73 2-48 (223)
351 PRK06871 DNA polymerase III su 98.0 7.2E-05 1.6E-09 58.9 10.2 125 33-165 9-148 (325)
352 TIGR01288 nodI ATP-binding ABC 98.0 1.9E-05 4E-10 61.8 6.9 27 46-72 29-55 (303)
353 PRK14256 phosphate ABC transpo 98.0 3.7E-05 7.9E-10 58.5 8.4 26 46-71 29-54 (252)
354 PLN03073 ABC transporter F fam 98.0 1.4E-05 3.1E-10 69.2 6.8 49 125-175 361-412 (718)
355 TIGR02203 MsbA_lipidA lipid A 98.0 2.4E-05 5.1E-10 66.3 8.0 28 45-72 356-383 (571)
356 TIGR03005 ectoine_ehuA ectoine 98.0 2.9E-05 6.2E-10 59.1 7.8 27 46-72 25-51 (252)
357 COG0396 sufC Cysteine desulfur 98.0 2.4E-05 5.3E-10 58.0 7.0 56 116-172 153-212 (251)
358 PRK11701 phnK phosphonate C-P 98.0 1.9E-05 4.1E-10 60.3 6.8 26 46-71 31-56 (258)
359 PRK13646 cbiO cobalt transport 98.0 2.2E-05 4.7E-10 60.9 7.2 27 46-72 32-58 (286)
360 PRK14249 phosphate ABC transpo 98.0 4.2E-05 9.2E-10 58.1 8.6 27 46-72 29-55 (251)
361 COG4133 CcmA ABC-type transpor 98.0 1.5E-05 3.2E-10 57.4 5.6 29 46-74 27-55 (209)
362 COG1127 Ttg2A ABC-type transpo 98.0 2.6E-05 5.7E-10 58.2 7.1 29 45-73 32-60 (263)
363 PRK15177 Vi polysaccharide exp 98.0 3.9E-05 8.5E-10 57.0 8.2 27 46-72 12-38 (213)
364 cd03240 ABC_Rad50 The catalyti 98.0 3.7E-05 7.9E-10 56.7 7.9 45 125-169 138-188 (204)
365 PRK13649 cbiO cobalt transport 98.0 1.9E-05 4.1E-10 61.0 6.7 26 46-71 32-57 (280)
366 cd03300 ABC_PotA_N PotA is an 98.0 2.8E-05 6E-10 58.4 7.4 28 46-73 25-52 (232)
367 PRK15439 autoinducer 2 ABC tra 98.0 3.8E-05 8.3E-10 64.3 8.9 26 46-71 36-61 (510)
368 PRK14257 phosphate ABC transpo 98.0 2.5E-05 5.5E-10 61.8 7.5 27 46-72 107-133 (329)
369 PRK15093 antimicrobial peptide 98.0 3.7E-05 8.1E-10 60.9 8.4 27 46-72 32-58 (330)
370 cd03231 ABC_CcmA_heme_exporter 98.0 2E-05 4.3E-10 58.0 6.5 27 46-72 25-51 (201)
371 TIGR03719 ABC_ABC_ChvD ATP-bin 98.0 2.6E-05 5.5E-10 65.9 7.9 28 46-73 30-57 (552)
372 PRK13643 cbiO cobalt transport 98.0 1.7E-05 3.8E-10 61.6 6.4 26 46-71 31-56 (288)
373 PRK14254 phosphate ABC transpo 98.0 3.6E-05 7.7E-10 59.7 8.2 27 46-72 64-90 (285)
374 PRK13638 cbiO cobalt transport 98.0 1.7E-05 3.8E-10 61.0 6.4 27 46-72 26-52 (271)
375 PRK10418 nikD nickel transport 98.0 3.4E-05 7.4E-10 58.8 7.9 28 45-72 27-54 (254)
376 COG1119 ModF ABC-type molybden 98.0 5E-05 1.1E-09 56.8 8.4 25 47-71 57-81 (257)
377 PF08423 Rad51: Rad51; InterP 98.0 0.00019 4.2E-09 54.8 12.0 90 47-137 38-144 (256)
378 PRK14267 phosphate ABC transpo 98.0 3.8E-05 8.3E-10 58.4 8.1 27 46-72 29-55 (253)
379 PRK14238 phosphate transporter 98.0 4.2E-05 9.1E-10 58.9 8.4 28 45-72 48-75 (271)
380 TIGR03878 thermo_KaiC_2 KaiC d 98.0 0.00011 2.4E-09 56.3 10.6 40 46-87 35-74 (259)
381 PF07728 AAA_5: AAA domain (dy 98.0 2.3E-05 5E-10 54.0 6.3 41 50-95 2-42 (139)
382 PRK14253 phosphate ABC transpo 98.0 4.3E-05 9.3E-10 58.0 8.3 27 46-72 28-54 (249)
383 COG4555 NatA ABC-type Na+ tran 98.0 6.3E-05 1.4E-09 54.9 8.5 31 44-74 25-55 (245)
384 KOG0735 AAA+-type ATPase [Post 98.0 3.2E-05 7E-10 65.6 8.0 78 45-138 429-506 (952)
385 TIGR03410 urea_trans_UrtE urea 98.0 2.3E-05 4.9E-10 58.8 6.7 27 46-72 25-51 (230)
386 PRK14262 phosphate ABC transpo 98.0 4.9E-05 1.1E-09 57.7 8.5 26 46-71 28-53 (250)
387 TIGR02857 CydD thiol reductant 98.0 3.7E-05 7.9E-10 64.6 8.5 28 45-72 346-373 (529)
388 PRK13641 cbiO cobalt transport 98.0 3.3E-05 7.1E-10 60.0 7.6 27 46-72 32-58 (287)
389 PRK13650 cbiO cobalt transport 98.0 1.9E-05 4E-10 61.1 6.2 27 46-72 32-58 (279)
390 PRK14273 phosphate ABC transpo 98.0 3.4E-05 7.3E-10 58.7 7.5 27 46-72 32-58 (254)
391 PRK14240 phosphate transporter 98.0 3.8E-05 8.2E-10 58.3 7.7 26 46-71 28-53 (250)
392 PF02463 SMC_N: RecF/RecN/SMC 98.0 2.6E-05 5.7E-10 58.0 6.7 48 125-172 157-207 (220)
393 PRK14261 phosphate ABC transpo 98.0 5.7E-05 1.2E-09 57.5 8.7 25 46-70 31-55 (253)
394 PRK08769 DNA polymerase III su 98.0 9.2E-05 2E-09 58.2 10.0 132 33-165 11-154 (319)
395 PF13086 AAA_11: AAA domain; P 98.0 2.9E-05 6.2E-10 57.7 6.9 66 33-100 5-75 (236)
396 PRK15429 formate hydrogenlyase 98.0 2.1E-05 4.5E-10 68.1 6.9 63 24-88 374-438 (686)
397 PRK11174 cysteine/glutathione 98.0 2.7E-05 5.9E-10 66.2 7.6 27 45-71 374-400 (588)
398 PRK14251 phosphate ABC transpo 98.0 3.9E-05 8.4E-10 58.3 7.7 27 46-72 29-55 (251)
399 cd03248 ABCC_TAP TAP, the Tran 98.0 4.8E-05 1E-09 56.8 8.1 26 46-71 39-64 (226)
400 PRK13636 cbiO cobalt transport 98.0 1.5E-05 3.4E-10 61.7 5.6 26 46-71 31-56 (283)
401 PRK14255 phosphate ABC transpo 98.0 4.1E-05 8.9E-10 58.2 7.8 25 46-70 30-54 (252)
402 PRK14242 phosphate transporter 98.0 4.2E-05 9.1E-10 58.2 7.9 26 46-71 31-56 (253)
403 cd03251 ABCC_MsbA MsbA is an e 98.0 4.9E-05 1.1E-09 57.1 8.1 27 46-72 27-53 (234)
404 PRK09493 glnQ glutamine ABC tr 98.0 1.7E-05 3.8E-10 59.8 5.7 27 46-72 26-52 (240)
405 TIGR00968 3a0106s01 sulfate AB 98.0 1.1E-05 2.3E-10 60.9 4.5 27 46-72 25-51 (237)
406 KOG0728 26S proteasome regulat 98.0 0.0001 2.2E-09 55.6 9.5 73 46-138 180-252 (404)
407 TIGR00954 3a01203 Peroxysomal 98.0 4.5E-05 9.8E-10 65.7 8.8 27 46-72 477-503 (659)
408 PRK14272 phosphate ABC transpo 98.0 4.4E-05 9.5E-10 58.0 7.9 27 46-72 29-55 (252)
409 PRK13545 tagH teichoic acids e 98.0 4.4E-05 9.6E-10 63.5 8.2 28 46-73 49-76 (549)
410 TIGR00708 cobA cob(I)alamin ad 98.0 0.00012 2.5E-09 52.5 9.3 114 47-164 5-140 (173)
411 PRK14271 phosphate ABC transpo 97.9 3.8E-05 8.3E-10 59.3 7.4 27 46-72 46-72 (276)
412 TIGR00554 panK_bact pantothena 97.9 8.8E-05 1.9E-09 57.5 9.3 28 45-72 60-87 (290)
413 COG1123 ATPase components of v 97.9 1.5E-05 3.3E-10 66.1 5.4 50 124-173 445-499 (539)
414 PRK11608 pspF phage shock prot 97.9 1.5E-05 3.3E-10 63.0 5.2 62 25-88 5-68 (326)
415 PRK11819 putative ABC transpor 97.9 6.2E-05 1.3E-09 63.7 9.2 127 46-176 349-514 (556)
416 PRK07993 DNA polymerase III su 97.9 2.2E-05 4.7E-10 62.2 6.1 129 33-168 9-153 (334)
417 PRK11022 dppD dipeptide transp 97.9 4.3E-05 9.3E-10 60.4 7.8 27 46-72 32-58 (326)
418 PRK06835 DNA replication prote 97.9 0.00013 2.8E-09 57.7 10.4 38 46-85 182-219 (329)
419 PRK11308 dppF dipeptide transp 97.9 2.1E-05 4.6E-10 62.2 6.0 26 46-71 40-65 (327)
420 COG3854 SpoIIIAA ncharacterize 97.9 2.6E-05 5.7E-10 58.0 6.0 122 38-168 128-257 (308)
421 cd03275 ABC_SMC1_euk Eukaryoti 97.9 8.7E-05 1.9E-09 56.3 9.1 24 48-71 23-46 (247)
422 PRK10938 putative molybdenum t 97.9 5.7E-05 1.2E-09 62.9 8.8 27 46-72 28-54 (490)
423 PRK11144 modC molybdate transp 97.9 4.5E-05 9.9E-10 60.9 7.8 27 46-72 23-49 (352)
424 PRK14260 phosphate ABC transpo 97.9 7.3E-05 1.6E-09 57.1 8.7 27 46-72 32-58 (259)
425 PRK10261 glutathione transport 97.9 3.4E-05 7.4E-10 66.1 7.5 27 46-72 41-67 (623)
426 PRK11000 maltose/maltodextrin 97.9 2.5E-05 5.4E-10 62.8 6.3 27 46-72 28-54 (369)
427 COG4988 CydD ABC-type transpor 97.9 2.6E-05 5.7E-10 64.6 6.5 48 125-172 473-523 (559)
428 PRK15079 oligopeptide ABC tran 97.9 8.9E-05 1.9E-09 58.7 9.4 26 46-71 46-71 (331)
429 PRK14244 phosphate ABC transpo 97.9 8.9E-05 1.9E-09 56.3 9.1 26 46-71 30-55 (251)
430 PRK05703 flhF flagellar biosyn 97.9 0.00015 3.2E-09 59.3 10.8 87 47-136 221-309 (424)
431 PRK15455 PrkA family serine pr 97.9 1.8E-05 3.9E-10 66.2 5.6 50 25-74 75-130 (644)
432 TIGR01193 bacteriocin_ABC ABC- 97.9 6.8E-05 1.5E-09 65.2 9.5 28 45-72 498-525 (708)
433 PRK11160 cysteine/glutathione 97.9 5.1E-05 1.1E-09 64.5 8.5 28 45-72 364-391 (574)
434 PRK14243 phosphate transporter 97.9 6.9E-05 1.5E-09 57.4 8.5 26 46-71 35-60 (264)
435 PRK11650 ugpC glycerol-3-phosp 97.9 1.2E-05 2.5E-10 64.3 4.3 27 46-72 29-55 (356)
436 CHL00206 ycf2 Ycf2; Provisiona 97.9 1.8E-05 3.9E-10 73.4 6.0 28 45-72 1628-1655(2281)
437 TIGR01192 chvA glucan exporter 97.9 3.7E-05 8.1E-10 65.4 7.6 28 45-72 359-386 (585)
438 PRK10762 D-ribose transporter 97.9 5.8E-05 1.3E-09 63.0 8.6 26 46-71 29-54 (501)
439 KOG0652 26S proteasome regulat 97.9 9.6E-05 2.1E-09 56.0 8.8 99 18-136 163-274 (424)
440 cd03291 ABCC_CFTR1 The CFTR su 97.9 8.1E-05 1.8E-09 57.6 8.8 29 45-73 61-89 (282)
441 TIGR03258 PhnT 2-aminoethylpho 97.9 4.2E-05 9.2E-10 61.2 7.4 28 46-73 30-57 (362)
442 PRK10787 DNA-binding ATP-depen 97.9 4.4E-05 9.5E-10 66.8 8.0 48 26-73 322-375 (784)
443 PRK14258 phosphate ABC transpo 97.9 6.4E-05 1.4E-09 57.5 8.1 27 46-72 32-58 (261)
444 PRK12422 chromosomal replicati 97.9 7.2E-05 1.6E-09 61.5 8.8 99 47-163 141-244 (445)
445 PRK09473 oppD oligopeptide tra 97.9 3E-05 6.5E-10 61.4 6.3 27 46-72 41-67 (330)
446 cd03288 ABCC_SUR2 The SUR doma 97.9 0.00011 2.5E-09 56.0 9.4 26 46-71 46-71 (257)
447 COG4178 ABC-type uncharacteriz 97.9 2.4E-05 5.1E-10 65.8 5.9 123 46-168 418-578 (604)
448 PRK14236 phosphate transporter 97.9 7.3E-05 1.6E-09 57.6 8.3 27 46-72 50-76 (272)
449 TIGR02204 MsbA_rel ABC transpo 97.9 5.3E-05 1.1E-09 64.3 8.1 29 45-73 364-392 (576)
450 TIGR03877 thermo_KaiC_1 KaiC d 97.9 0.00019 4E-09 54.2 10.3 40 46-87 20-59 (237)
451 TIGR02238 recomb_DMC1 meiotic 97.9 0.00018 3.9E-09 56.5 10.4 92 46-138 95-203 (313)
452 TIGR03269 met_CoM_red_A2 methy 97.9 7.8E-05 1.7E-09 62.6 8.9 26 46-71 309-334 (520)
453 KOG0735 AAA+-type ATPase [Post 97.9 4.5E-05 9.7E-10 64.8 7.3 100 49-168 703-817 (952)
454 PRK05022 anaerobic nitric oxid 97.9 2.1E-05 4.6E-10 65.8 5.5 64 24-89 185-250 (509)
455 PRK13639 cbiO cobalt transport 97.9 3.5E-05 7.6E-10 59.4 6.3 26 46-71 27-52 (275)
456 PRK10522 multidrug transporter 97.9 3.5E-05 7.6E-10 65.0 6.8 28 45-72 347-374 (547)
457 PRK11823 DNA repair protein Ra 97.9 3.8E-05 8.2E-10 63.2 6.7 88 46-138 79-168 (446)
458 PRK10762 D-ribose transporter 97.9 7.7E-05 1.7E-09 62.3 8.7 26 46-71 277-302 (501)
459 cd03299 ABC_ModC_like Archeal 97.9 6.6E-05 1.4E-09 56.5 7.6 27 46-72 24-50 (235)
460 PRK14721 flhF flagellar biosyn 97.9 0.00013 2.7E-09 59.4 9.5 27 46-72 190-216 (420)
461 TIGR02142 modC_ABC molybdenum 97.9 6.5E-05 1.4E-09 60.0 7.8 27 46-72 22-48 (354)
462 PRK13635 cbiO cobalt transport 97.9 3.7E-05 8E-10 59.4 6.2 27 46-72 32-58 (279)
463 PRK14270 phosphate ABC transpo 97.9 6.2E-05 1.4E-09 57.2 7.4 26 46-71 29-54 (251)
464 TIGR02974 phageshock_pspF psp 97.9 2.4E-05 5.2E-10 61.9 5.3 58 29-88 2-61 (329)
465 COG0464 SpoVK ATPases of the A 97.9 3.6E-05 7.8E-10 64.2 6.6 73 46-138 275-347 (494)
466 PRK04328 hypothetical protein; 97.9 0.00016 3.5E-09 55.0 9.6 41 46-88 22-62 (249)
467 PRK08118 topology modulation p 97.9 3.1E-05 6.7E-10 55.3 5.3 35 48-82 2-37 (167)
468 cd00046 DEXDc DEAD-like helica 97.9 3.4E-05 7.3E-10 52.2 5.4 35 49-83 2-36 (144)
469 PRK09700 D-allose transporter 97.9 0.00012 2.7E-09 61.2 9.7 26 46-71 30-55 (510)
470 PRK13642 cbiO cobalt transport 97.9 3.3E-05 7.1E-10 59.6 5.8 27 46-72 32-58 (277)
471 PRK13637 cbiO cobalt transport 97.9 3.4E-05 7.4E-10 59.9 5.9 26 46-71 32-57 (287)
472 KOG0058 Peptide exporter, ABC 97.9 9.1E-05 2E-09 63.0 8.7 27 45-71 492-518 (716)
473 PRK14266 phosphate ABC transpo 97.9 0.00012 2.6E-09 55.5 8.8 26 46-71 28-53 (250)
474 TIGR03269 met_CoM_red_A2 methy 97.9 6.2E-05 1.3E-09 63.2 7.7 26 46-71 25-50 (520)
475 cd02025 PanK Pantothenate kina 97.9 0.00011 2.3E-09 54.9 8.2 25 49-73 1-25 (220)
476 TIGR03719 ABC_ABC_ChvD ATP-bin 97.9 9.5E-05 2E-09 62.5 8.8 128 46-175 347-511 (552)
477 PRK14263 phosphate ABC transpo 97.9 8.9E-05 1.9E-09 56.8 7.9 27 45-71 32-58 (261)
478 TIGR01359 UMP_CMP_kin_fam UMP- 97.9 6.8E-05 1.5E-09 54.1 6.9 24 49-72 1-24 (183)
479 TIGR01846 type_I_sec_HlyB type 97.9 7.2E-05 1.6E-09 64.9 8.2 28 45-72 481-508 (694)
480 TIGR01420 pilT_fam pilus retra 97.9 2.3E-05 5.1E-10 62.3 4.8 113 46-168 121-234 (343)
481 PF03215 Rad17: Rad17 cell cyc 97.8 2.8E-05 6.1E-10 64.9 5.4 61 13-73 6-71 (519)
482 PRK09452 potA putrescine/sperm 97.8 2E-05 4.4E-10 63.3 4.4 27 46-72 39-65 (375)
483 TIGR01069 mutS2 MutS2 family p 97.8 2.6E-05 5.7E-10 68.0 5.4 25 46-70 321-345 (771)
484 cd03289 ABCC_CFTR2 The CFTR su 97.8 9.1E-05 2E-09 57.2 7.8 27 46-72 29-55 (275)
485 PRK10789 putative multidrug tr 97.8 8.1E-05 1.8E-09 63.2 8.2 28 45-72 339-366 (569)
486 KOG0066 eIF2-interacting prote 97.8 6E-05 1.3E-09 61.1 6.9 51 126-176 430-481 (807)
487 COG0563 Adk Adenylate kinase a 97.8 8E-05 1.7E-09 53.7 7.0 24 49-72 2-25 (178)
488 PRK10790 putative multidrug tr 97.8 2.9E-05 6.4E-10 66.1 5.5 29 45-73 365-393 (592)
489 PRK14252 phosphate ABC transpo 97.8 0.0001 2.2E-09 56.6 8.0 26 46-71 41-66 (265)
490 PRK10851 sulfate/thiosulfate t 97.8 1.9E-05 4.1E-10 63.0 4.1 27 46-72 27-53 (353)
491 PRK11432 fbpC ferric transport 97.8 1.7E-05 3.6E-10 63.3 3.7 27 46-72 31-57 (351)
492 PRK15439 autoinducer 2 ABC tra 97.8 5.2E-05 1.1E-09 63.5 6.9 26 46-71 288-313 (510)
493 TIGR01842 type_I_sec_PrtD type 97.8 7.2E-05 1.6E-09 63.1 7.7 28 45-72 342-369 (544)
494 PRK09700 D-allose transporter 97.8 0.00012 2.6E-09 61.3 9.0 26 46-71 288-313 (510)
495 COG0444 DppD ABC-type dipeptid 97.8 0.00018 4E-09 55.8 9.2 48 124-172 169-222 (316)
496 PRK08699 DNA polymerase III su 97.8 0.00024 5.2E-09 56.1 10.1 38 34-72 9-46 (325)
497 KOG0651 26S proteasome regulat 97.8 6.2E-05 1.3E-09 58.2 6.5 72 46-137 165-236 (388)
498 COG0593 DnaA ATPase involved i 97.8 4.3E-05 9.2E-10 61.6 6.0 29 46-74 112-140 (408)
499 PRK14246 phosphate ABC transpo 97.8 0.00013 2.8E-09 55.8 8.3 27 46-72 35-61 (257)
500 PRK10867 signal recognition pa 97.8 0.0002 4.3E-09 58.6 9.8 57 46-103 99-156 (433)
No 1
>PF00931 NB-ARC: NB-ARC domain; InterPro: IPR002182 This is the NB-ARC domain, a novel signalling motif found in bacteria and eukaryotes, shared by plant resistance gene products and regulators of cell death in animals []. This domain has been structurally characterised in the human protein apoptotic protease-activating factor 1 (Apaf-1) []. It contains the three-layered alpha-beta fold and subsequent short alpha-helical region characteristic of the AAA+ ATPase domain superfamily. While this domain is thought to bind and hyrolyse ATP, only ADP binding has been experimentally verified. It is proposed that binding and hydrolysis of ATP by this domain induces conformational changes the the overall protein, leading to formation of the apoptosome.; GO: 0043531 ADP binding; PDB: 3IZA_E 1Z6T_D 3SFZ_A 3SHF_A 1VT4_M 3IZ8_G 3LQR_A 2A5Y_C 3LQQ_A.
Probab=99.88 E-value=3.8e-22 Score=154.10 Aligned_cols=139 Identities=34% Similarity=0.541 Sum_probs=106.1
Q ss_pred hHHHHHHHHHHhcc--CCccEEEEEeCCCCcHHHHHHHHHhHHhhhhcccceEEEEecCCcCHHHHHHHHHHHhCCCch-
Q 035585 31 RLSTLKSIQDALTD--VNVNIVGVYGMGGIGKTTLVKEFARQASEEKLFDQVVFSEVSQTPDIKKIHGEIAEKLGLEFS- 107 (183)
Q Consensus 31 R~~~l~~l~~~l~~--~~~~~v~i~G~~G~GKTtL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~- 107 (183)
|+.++++|.+.|.. .+.++++|+|++|+|||+||..++++...+..|+.++|++++.......+...++..+.....
T Consensus 1 re~~~~~l~~~L~~~~~~~~~v~I~G~~G~GKT~LA~~~~~~~~~~~~f~~v~wv~~~~~~~~~~~~~~i~~~l~~~~~~ 80 (287)
T PF00931_consen 1 REKEIEKLKDWLLDNSNEVRVVAIVGMGGIGKTTLARQVARDLRIKNRFDGVIWVSLSKNPSLEQLLEQILRQLGEPDSS 80 (287)
T ss_dssp -HHHHHHHHHHHHTTTTSSEEEEEEESTTSSHHHHHHHHHCHHHHCCCCTEEEEEEEES-SCCHHHHHHHHHHHTCC-ST
T ss_pred CHHHHHHHHHHhhCCCCCeEEEEEEcCCcCCcceeeeecccccccccccccccccccccccccccccccccccccccccc
Confidence 78999999999986 788999999999999999999999886655568899999999888888899999999977632
Q ss_pred ---hHHHHHHHHHHHHHHhcCCeEEEEEeCCCCcccccccCcCCCCCCCCcEEEEEecChHHHhhc
Q 035585 108 ---EEAESRRASRLYERLKKEKMILVILDNIWKYLDLETVGIPFGDDHRGCKLLLTARDCNVLLNM 170 (183)
Q Consensus 108 ---~~~~~~~~~~~~~~~~~~~~~llvlD~~~~~~~~~~l~~~~~~~~~~~~iiitsr~~~~~~~~ 170 (183)
..........+.+.+. ++++||||||+++...++.+...+.....+++||+|||+..+....
T Consensus 81 ~~~~~~~~~~~~~l~~~L~-~~~~LlVlDdv~~~~~~~~l~~~~~~~~~~~kilvTTR~~~v~~~~ 145 (287)
T PF00931_consen 81 ISDPKDIEELQDQLRELLK-DKRCLLVLDDVWDEEDLEELREPLPSFSSGSKILVTTRDRSVAGSL 145 (287)
T ss_dssp SSCCSSHHHHHHHHHHHHC-CTSEEEEEEEE-SHHHH-------HCHHSS-EEEEEESCGGGGTTH
T ss_pred cccccccccccccchhhhc-cccceeeeeeeccccccccccccccccccccccccccccccccccc
Confidence 2233445555666665 7799999999999988888877777777799999999999876643
No 2
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=99.86 E-value=1.1e-20 Score=163.55 Aligned_cols=155 Identities=34% Similarity=0.516 Sum_probs=129.4
Q ss_pred cCCCcccccchHHHHHHHHHHhccCCccEEEEEeCCCCcHHHHHHHHHhHHh-hhhcccceEEEEecCCcCHHHHHHHHH
Q 035585 21 SNKGYEAFKSRLSTLKSIQDALTDVNVNIVGVYGMGGIGKTTLVKEFARQAS-EEKLFDQVVFSEVSQTPDIKKIHGEIA 99 (183)
Q Consensus 21 ~~~~~~~~~gR~~~l~~l~~~l~~~~~~~v~i~G~~G~GKTtL~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~i~ 99 (183)
|...... +|.+..++.+.+.|-.+..++++|+|++|+|||||+++++++.. ....|+.++|+.++++.+...+..+|+
T Consensus 154 ~~~~~~~-VG~e~~~~kl~~~L~~d~~~iv~i~GMGGvGKTTL~~qi~N~~~~v~~~Fd~~iWV~VSk~f~~~~iq~~Il 232 (889)
T KOG4658|consen 154 PIQSESD-VGLETMLEKLWNRLMEDDVGIVGIYGMGGVGKTTLARQIFNKFDEVGNHFDGVIWVVVSKEFTTRKIQQTIL 232 (889)
T ss_pred CCCcccc-ccHHHHHHHHHHHhccCCCCEEEEECCCcccHHHHHHHHhcccchhcccCceEEEEEEcccccHHhHHHHHH
Confidence 3333334 99999999999999877779999999999999999999999998 667899999999999999999999999
Q ss_pred HHhCCCchhH---HHHHHHHHHHHHHhcCCeEEEEEeCCCCcccccccCcCCCCCCCCcEEEEEecChHHHhh-cCCCCc
Q 035585 100 EKLGLEFSEE---AESRRASRLYERLKKEKMILVILDNIWKYLDLETVGIPFGDDHRGCKLLLTARDCNVLLN-MSLCRS 175 (183)
Q Consensus 100 ~~l~~~~~~~---~~~~~~~~~~~~~~~~~~~llvlD~~~~~~~~~~l~~~~~~~~~~~~iiitsr~~~~~~~-~~~~~~ 175 (183)
..++...+.. ........+++.+. .++++||+||+|+..+|+.+..+++....||+|++|||+.++... +++...
T Consensus 233 ~~l~~~~~~~~~~~~~~~~~~i~~~L~-~krfllvLDDIW~~~dw~~I~~~~p~~~~g~KvvlTTRs~~V~~~~m~~~~~ 311 (889)
T KOG4658|consen 233 ERLGLLDEEWEDKEEDELASKLLNLLE-GKRFLLVLDDIWEEVDWDKIGVPFPSRENGSKVVLTTRSEEVCGRAMGVDYP 311 (889)
T ss_pred HHhccCCcccchhhHHHHHHHHHHHhc-cCceEEEEecccccccHHhcCCCCCCccCCeEEEEEeccHhhhhccccCCcc
Confidence 9887643332 22334444555554 999999999999999999999999999889999999999999997 665444
Q ss_pred ch
Q 035585 176 EE 177 (183)
Q Consensus 176 ~~ 177 (183)
++
T Consensus 312 ~~ 313 (889)
T KOG4658|consen 312 IE 313 (889)
T ss_pred cc
Confidence 43
No 3
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.74 E-value=2.8e-17 Score=147.42 Aligned_cols=151 Identities=19% Similarity=0.298 Sum_probs=103.6
Q ss_pred hhhcCCCcccccchHHHHHHHHHHhc--cCCccEEEEEeCCCCcHHHHHHHHHhHHhhhhcccceEEEEe---cCCc---
Q 035585 18 WLKSNKGYEAFKSRLSTLKSIQDALT--DVNVNIVGVYGMGGIGKTTLVKEFARQASEEKLFDQVVFSEV---SQTP--- 89 (183)
Q Consensus 18 ~~~~~~~~~~~~gR~~~l~~l~~~l~--~~~~~~v~i~G~~G~GKTtL~~~~~~~~~~~~~~~~~~~~~~---~~~~--- 89 (183)
...++....+++||++.++.+..++. ....++++|+|++|+||||||+.+++++... |.+.+|++. ....
T Consensus 176 ~~~~~~~~~~~vG~~~~l~~l~~lL~l~~~~~~vvgI~G~gGiGKTTLA~~l~~~l~~~--F~g~vfv~~~~v~~~~~~~ 253 (1153)
T PLN03210 176 NLTPSNDFEDFVGIEDHIAKMSSLLHLESEEVRMVGIWGSSGIGKTTIARALFSRLSRQ--FQSSVFIDRAFISKSMEIY 253 (1153)
T ss_pred ccccCcccccccchHHHHHHHHHHHccccCceEEEEEEcCCCCchHHHHHHHHHHHhhc--CCeEEEeeccccccchhhc
Confidence 34456677889999999999998875 5567899999999999999999999988765 666666532 1000
Q ss_pred --------C-HHHHHHHHHHHhCCCchhHHHHHHHHHHHHHHhcCCeEEEEEeCCCCcccccccCcCCCCCCCCcEEEEE
Q 035585 90 --------D-IKKIHGEIAEKLGLEFSEEAESRRASRLYERLKKEKMILVILDNIWKYLDLETVGIPFGDDHRGCKLLLT 160 (183)
Q Consensus 90 --------~-~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~llvlD~~~~~~~~~~l~~~~~~~~~~~~iiit 160 (183)
. ...+...++..+........ .....+.+.+. +++++|||||+|+..+++.+.....+..+|++||||
T Consensus 254 ~~~~~~~~~~~~~l~~~~l~~il~~~~~~~--~~~~~~~~~L~-~krvLLVLDdv~~~~~l~~L~~~~~~~~~GsrIIiT 330 (1153)
T PLN03210 254 SSANPDDYNMKLHLQRAFLSEILDKKDIKI--YHLGAMEERLK-HRKVLIFIDDLDDQDVLDALAGQTQWFGSGSRIIVI 330 (1153)
T ss_pred ccccccccchhHHHHHHHHHHHhCCCCccc--CCHHHHHHHHh-CCeEEEEEeCCCCHHHHHHHHhhCccCCCCcEEEEE
Confidence 0 11222333333321110000 00123334444 899999999999988888886666667789999999
Q ss_pred ecChHHHhhcCCC
Q 035585 161 ARDCNVLLNMSLC 173 (183)
Q Consensus 161 sr~~~~~~~~~~~ 173 (183)
||+..++...+..
T Consensus 331 Trd~~vl~~~~~~ 343 (1153)
T PLN03210 331 TKDKHFLRAHGID 343 (1153)
T ss_pred eCcHHHHHhcCCC
Confidence 9999998765443
No 4
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=99.52 E-value=3.3e-13 Score=108.82 Aligned_cols=119 Identities=23% Similarity=0.191 Sum_probs=87.1
Q ss_pred cCCCcccccchHHHHHHHHHHhc----cCCccEEEEEeCCCCcHHHHHHHHHhHHhhhhcccceEEEEecCCcCHHHHHH
Q 035585 21 SNKGYEAFKSRLSTLKSIQDALT----DVNVNIVGVYGMGGIGKTTLVKEFARQASEEKLFDQVVFSEVSQTPDIKKIHG 96 (183)
Q Consensus 21 ~~~~~~~~~gR~~~l~~l~~~l~----~~~~~~v~i~G~~G~GKTtL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 (183)
|...|..|.||+++++.|...+. +..++.+.|+|++|+|||++++.+++.+........++|+++....+...++.
T Consensus 25 ~~~~P~~l~~Re~e~~~l~~~l~~~~~~~~~~~~lI~G~~GtGKT~l~~~v~~~l~~~~~~~~~v~in~~~~~~~~~~~~ 104 (394)
T PRK00411 25 PDYVPENLPHREEQIEELAFALRPALRGSRPLNVLIYGPPGTGKTTTVKKVFEELEEIAVKVVYVYINCQIDRTRYAIFS 104 (394)
T ss_pred CCCcCCCCCCHHHHHHHHHHHHHHHhCCCCCCeEEEECCCCCCHHHHHHHHHHHHHHhcCCcEEEEEECCcCCCHHHHHH
Confidence 34456689999999999999874 34567889999999999999999999887653223467888887777788888
Q ss_pred HHHHHhCC-Cch--hHHHHHHHHHHHHHHhc-CCeEEEEEeCCCCcc
Q 035585 97 EIAEKLGL-EFS--EEAESRRASRLYERLKK-EKMILVILDNIWKYL 139 (183)
Q Consensus 97 ~i~~~l~~-~~~--~~~~~~~~~~~~~~~~~-~~~~llvlD~~~~~~ 139 (183)
.++.++.. ..+ .....+....+...+.. ++..+|||||+|...
T Consensus 105 ~i~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~viviDE~d~l~ 151 (394)
T PRK00411 105 EIARQLFGHPPPSSGLSFDELFDKIAEYLDERDRVLIVALDDINYLF 151 (394)
T ss_pred HHHHHhcCCCCCCCCCCHHHHHHHHHHHHHhcCCEEEEEECCHhHhh
Confidence 99888864 221 11223344455555543 567899999998764
No 5
>TIGR02928 orc1/cdc6 family replication initiation protein. Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other.
Probab=99.49 E-value=1.3e-12 Score=104.35 Aligned_cols=115 Identities=23% Similarity=0.291 Sum_probs=83.2
Q ss_pred CcccccchHHHHHHHHHHhc----cCCccEEEEEeCCCCcHHHHHHHHHhHHhhhhcc----cceEEEEecCCcCHHHHH
Q 035585 24 GYEAFKSRLSTLKSIQDALT----DVNVNIVGVYGMGGIGKTTLVKEFARQASEEKLF----DQVVFSEVSQTPDIKKIH 95 (183)
Q Consensus 24 ~~~~~~gR~~~l~~l~~~l~----~~~~~~v~i~G~~G~GKTtL~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~ 95 (183)
.|..|.||+++++.|..++. +...+.+.|+|++|+|||++++.+++.+.....- -.++|+++........++
T Consensus 13 ~p~~l~gRe~e~~~l~~~l~~~~~~~~~~~i~I~G~~GtGKT~l~~~~~~~l~~~~~~~~~~~~~v~in~~~~~~~~~~~ 92 (365)
T TIGR02928 13 VPDRIVHRDEQIEELAKALRPILRGSRPSNVFIYGKTGTGKTAVTKYVMKELEEAAEDRDVRVVTVYVNCQILDTLYQVL 92 (365)
T ss_pred CCCCCCCcHHHHHHHHHHHHHHHcCCCCCcEEEECCCCCCHHHHHHHHHHHHHHHhhccCCceEEEEEECCCCCCHHHHH
Confidence 34579999999999999876 3455789999999999999999999887643111 246788887777777888
Q ss_pred HHHHHHh---CCCchh--HHHHHHHHHHHHHHh-cCCeEEEEEeCCCCc
Q 035585 96 GEIAEKL---GLEFSE--EAESRRASRLYERLK-KEKMILVILDNIWKY 138 (183)
Q Consensus 96 ~~i~~~l---~~~~~~--~~~~~~~~~~~~~~~-~~~~~llvlD~~~~~ 138 (183)
..++..+ +...+. ....+....+...+. .+++.+|||||+|.+
T Consensus 93 ~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlvIDE~d~L 141 (365)
T TIGR02928 93 VELANQLRGSGEEVPTTGLSTSEVFRRLYKELNERGDSLIIVLDEIDYL 141 (365)
T ss_pred HHHHHHHhhcCCCCCCCCCCHHHHHHHHHHHHHhcCCeEEEEECchhhh
Confidence 8888888 332221 122333445555553 356889999999977
No 6
>COG1474 CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones]
Probab=99.43 E-value=6.3e-12 Score=100.02 Aligned_cols=142 Identities=21% Similarity=0.297 Sum_probs=103.0
Q ss_pred cccchHHHHHHHHHHhc----cCCccEEEEEeCCCCcHHHHHHHHHhHHhhhhcccceEEEEecCCcCHHHHHHHHHHHh
Q 035585 27 AFKSRLSTLKSIQDALT----DVNVNIVGVYGMGGIGKTTLVKEFARQASEEKLFDQVVFSEVSQTPDIKKIHGEIAEKL 102 (183)
Q Consensus 27 ~~~gR~~~l~~l~~~l~----~~~~~~v~i~G~~G~GKTtL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l 102 (183)
.+.+|+++++++...+. +..+..+.|+|++|+|||+.++.+..++........++|+||....+...++..+++.+
T Consensus 18 ~l~~Re~ei~~l~~~l~~~~~~~~p~n~~iyG~~GTGKT~~~~~v~~~l~~~~~~~~~~yINc~~~~t~~~i~~~i~~~~ 97 (366)
T COG1474 18 ELPHREEEINQLASFLAPALRGERPSNIIIYGPTGTGKTATVKFVMEELEESSANVEVVYINCLELRTPYQVLSKILNKL 97 (366)
T ss_pred cccccHHHHHHHHHHHHHHhcCCCCccEEEECCCCCCHhHHHHHHHHHHHhhhccCceEEEeeeeCCCHHHHHHHHHHHc
Confidence 38899999999998876 56666799999999999999999999998864434489999999999999999999988
Q ss_pred C-CCchhHHHHHHHHHHHHHHhc-CCeEEEEEeCCCCccccc--ccCcCCCC---CCCCcEEEEEecChHHHh
Q 035585 103 G-LEFSEEAESRRASRLYERLKK-EKMILVILDNIWKYLDLE--TVGIPFGD---DHRGCKLLLTARDCNVLL 168 (183)
Q Consensus 103 ~-~~~~~~~~~~~~~~~~~~~~~-~~~~llvlD~~~~~~~~~--~l~~~~~~---~~~~~~iiitsr~~~~~~ 168 (183)
+ .+..+....+....+.+.+.. ++.+++||||++.+..-. .+...+.. ......+|.++.+..+..
T Consensus 98 ~~~p~~g~~~~~~~~~l~~~~~~~~~~~IvvLDEid~L~~~~~~~LY~L~r~~~~~~~~v~vi~i~n~~~~~~ 170 (366)
T COG1474 98 GKVPLTGDSSLEILKRLYDNLSKKGKTVIVILDEVDALVDKDGEVLYSLLRAPGENKVKVSIIAVSNDDKFLD 170 (366)
T ss_pred CCCCCCCCchHHHHHHHHHHHHhcCCeEEEEEcchhhhccccchHHHHHHhhccccceeEEEEEEeccHHHHH
Confidence 5 222234445555666666643 789999999999774332 22222222 222234666666666544
No 7
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=99.42 E-value=1.1e-12 Score=89.86 Aligned_cols=116 Identities=25% Similarity=0.367 Sum_probs=81.6
Q ss_pred CccEEEEEeCCCCcHHHHHHHHHhHHhhhhc---ccceEEEEecCCcCHHHHHHHHHHHhCCCchh-HHHHHHHHHHHHH
Q 035585 46 NVNIVGVYGMGGIGKTTLVKEFARQASEEKL---FDQVVFSEVSQTPDIKKIHGEIAEKLGLEFSE-EAESRRASRLYER 121 (183)
Q Consensus 46 ~~~~v~i~G~~G~GKTtL~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~-~~~~~~~~~~~~~ 121 (183)
+.+.+.|+|++|+|||++++.+...+..... ...++|++++...+...++..++..+...... .........+...
T Consensus 3 ~~~~~~i~G~~G~GKT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~l~~~~~~~ 82 (131)
T PF13401_consen 3 SQRILVISGPPGSGKTTLIKRLARQLNAEAEIKNHPDVIYVNCPSSRTPRDFAQEILEALGLPLKSRQTSDELRSLLIDA 82 (131)
T ss_dssp ----EEEEE-TTSSHHHHHHHHHHHHHHHHHHCCCEEEEEEEHHHHSSHHHHHHHHHHHHT-SSSSTS-HHHHHHHHHHH
T ss_pred CCcccEEEcCCCCCHHHHHHHHHHHhHHhhhccCCCcEEEEEeCCCCCHHHHHHHHHHHhCccccccCCHHHHHHHHHHH
Confidence 3578999999999999999999998865311 23577999988888999999999999877666 4445555677777
Q ss_pred HhcCCeEEEEEeCCCCc-c--cccccCcCCCCCCCCcEEEEEecC
Q 035585 122 LKKEKMILVILDNIWKY-L--DLETVGIPFGDDHRGCKLLLTARD 163 (183)
Q Consensus 122 ~~~~~~~llvlD~~~~~-~--~~~~l~~~~~~~~~~~~iiitsr~ 163 (183)
+...+..+|||||+|.+ . .++.+.. +.+ ..+..++++.++
T Consensus 83 l~~~~~~~lviDe~~~l~~~~~l~~l~~-l~~-~~~~~vvl~G~~ 125 (131)
T PF13401_consen 83 LDRRRVVLLVIDEADHLFSDEFLEFLRS-LLN-ESNIKVVLVGTP 125 (131)
T ss_dssp HHHCTEEEEEEETTHHHHTHHHHHHHHH-HTC-SCBEEEEEEESS
T ss_pred HHhcCCeEEEEeChHhcCCHHHHHHHHH-HHh-CCCCeEEEEECh
Confidence 77677789999999986 3 1333322 222 567778888876
No 8
>PF05729 NACHT: NACHT domain
Probab=99.35 E-value=7.4e-12 Score=88.72 Aligned_cols=114 Identities=25% Similarity=0.326 Sum_probs=70.5
Q ss_pred cEEEEEeCCCCcHHHHHHHHHhHHhhhhcc----cceEEEEecCCcCH---HHHHHHHHHHhCCCchhHHHHHHHHHHHH
Q 035585 48 NIVGVYGMGGIGKTTLVKEFARQASEEKLF----DQVVFSEVSQTPDI---KKIHGEIAEKLGLEFSEEAESRRASRLYE 120 (183)
Q Consensus 48 ~~v~i~G~~G~GKTtL~~~~~~~~~~~~~~----~~~~~~~~~~~~~~---~~~~~~i~~~l~~~~~~~~~~~~~~~~~~ 120 (183)
++++|+|++|+|||++++.++..+...... ..++|.+....... ..+...+...+......... .+..
T Consensus 1 r~l~I~G~~G~GKStll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~-----~~~~ 75 (166)
T PF05729_consen 1 RVLWISGEPGSGKSTLLRKLAQQLAEEEPPPSKFPYPFFFSLRDISDSNNSRSLADLLFDQLPESIAPIEE-----LLQE 75 (166)
T ss_pred CEEEEECCCCCChHHHHHHHHHHHHhcCcccccceEEEEEeehhhhhccccchHHHHHHHhhccchhhhHH-----HHHH
Confidence 578999999999999999999998776432 24556555543322 13334444433322111111 2233
Q ss_pred HHhcCCeEEEEEeCCCCccccc---------c-cCcCCCC-CCCCcEEEEEecChHH
Q 035585 121 RLKKEKMILVILDNIWKYLDLE---------T-VGIPFGD-DHRGCKLLLTARDCNV 166 (183)
Q Consensus 121 ~~~~~~~~llvlD~~~~~~~~~---------~-l~~~~~~-~~~~~~iiitsr~~~~ 166 (183)
.....++++||||++|+..... . +...+.. ..+++++++|+|....
T Consensus 76 ~~~~~~~~llilDglDE~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~liit~r~~~~ 132 (166)
T PF05729_consen 76 LLEKNKRVLLILDGLDELEEQDQSQERQRLLDLLSQLLPQALPPGVKLIITSRPRAF 132 (166)
T ss_pred HHHcCCceEEEEechHhcccchhhhHHHHHHHHHHHHhhhccCCCCeEEEEEcCChH
Confidence 3345889999999998774311 1 1122222 3668999999999887
No 9
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=99.31 E-value=2.1e-11 Score=84.11 Aligned_cols=123 Identities=16% Similarity=0.150 Sum_probs=74.9
Q ss_pred cchHHHHHHHHHHhccCCccEEEEEeCCCCcHHHHHHHHHhHHhhhhcccceEEEEecCCcCHHHHHHHHHHHhCCCchh
Q 035585 29 KSRLSTLKSIQDALTDVNVNIVGVYGMGGIGKTTLVKEFARQASEEKLFDQVVFSEVSQTPDIKKIHGEIAEKLGLEFSE 108 (183)
Q Consensus 29 ~gR~~~l~~l~~~l~~~~~~~v~i~G~~G~GKTtL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~ 108 (183)
.+|+.++..+...+.....+.+.|+|++|+|||++++.+++.+... ...++++++............+...
T Consensus 1 ~~~~~~~~~i~~~~~~~~~~~v~i~G~~G~GKT~l~~~i~~~~~~~--~~~v~~~~~~~~~~~~~~~~~~~~~------- 71 (151)
T cd00009 1 VGQEEAIEALREALELPPPKNLLLYGPPGTGKTTLARAIANELFRP--GAPFLYLNASDLLEGLVVAELFGHF------- 71 (151)
T ss_pred CchHHHHHHHHHHHhCCCCCeEEEECCCCCCHHHHHHHHHHHhhcC--CCCeEEEehhhhhhhhHHHHHhhhh-------
Confidence 3688899999998876667899999999999999999999988633 3346666655433322111111000
Q ss_pred HHHHHHHHHHHHHHhcCCeEEEEEeCCCCc--ccccccC---cCCCC---CCCCcEEEEEecChH
Q 035585 109 EAESRRASRLYERLKKEKMILVILDNIWKY--LDLETVG---IPFGD---DHRGCKLLLTARDCN 165 (183)
Q Consensus 109 ~~~~~~~~~~~~~~~~~~~~llvlD~~~~~--~~~~~l~---~~~~~---~~~~~~iiitsr~~~ 165 (183)
............++.+|++||++.+ .....+. ..... ...++.+|+++.+..
T Consensus 72 -----~~~~~~~~~~~~~~~~lilDe~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~ii~~~~~~~ 131 (151)
T cd00009 72 -----LVRLLFELAEKAKPGVLFIDEIDSLSRGAQNALLRVLETLNDLRIDRENVRVIGATNRPL 131 (151)
T ss_pred -----hHhHHHHhhccCCCeEEEEeChhhhhHHHHHHHHHHHHhcCceeccCCCeEEEEecCccc
Confidence 0111111222367889999999865 1111221 22211 135778888888654
No 10
>PF01637 Arch_ATPase: Archaeal ATPase; InterPro: IPR011579 This domain has been found in a number of bacterial and archaeal proteins, all of which contain a conserved P-loop motif that is involved in binding ATP.; GO: 0005524 ATP binding; PDB: 2FNA_A 2QEN_A.
Probab=99.31 E-value=4.5e-12 Score=94.58 Aligned_cols=110 Identities=24% Similarity=0.366 Sum_probs=65.1
Q ss_pred ccchHHHHHHHHHHhccCCccEEEEEeCCCCcHHHHHHHHHhHHhhhhcccceEEEEecCCcCHHHHHHH----------
Q 035585 28 FKSRLSTLKSIQDALTDVNVNIVGVYGMGGIGKTTLVKEFARQASEEKLFDQVVFSEVSQTPDIKKIHGE---------- 97 (183)
Q Consensus 28 ~~gR~~~l~~l~~~l~~~~~~~v~i~G~~G~GKTtL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------- 97 (183)
|+||+++++.|.+++.+.+.+.++|+|+.|+|||+|++.+.+....... .++|+..............
T Consensus 1 F~gR~~el~~l~~~l~~~~~~~~~l~G~rg~GKTsLl~~~~~~~~~~~~--~~~y~~~~~~~~~~~~~~~~~~~~~~~~l 78 (234)
T PF01637_consen 1 FFGREKELEKLKELLESGPSQHILLYGPRGSGKTSLLKEFINELKEKGY--KVVYIDFLEESNESSLRSFIEETSLADEL 78 (234)
T ss_dssp S-S-HHHHHHHHHCHHH--SSEEEEEESTTSSHHHHHHHHHHHCT--EE--CCCHHCCTTBSHHHHHHHHHHHHHHHCHC
T ss_pred CCCHHHHHHHHHHHHHhhcCcEEEEEcCCcCCHHHHHHHHHHHhhhcCC--cEEEEecccchhhhHHHHHHHHHHHHHHH
Confidence 7899999999999998777789999999999999999999998855322 3444444333222111111
Q ss_pred ---HHHHhCCC-c------hhHHHHHHHHHHHHHHhc-CCeEEEEEeCCCCcc
Q 035585 98 ---IAEKLGLE-F------SEEAESRRASRLYERLKK-EKMILVILDNIWKYL 139 (183)
Q Consensus 98 ---i~~~l~~~-~------~~~~~~~~~~~~~~~~~~-~~~~llvlD~~~~~~ 139 (183)
+...+... . ...........+...+.. +++++|||||++...
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~iiviDe~~~~~ 131 (234)
T PF01637_consen 79 SEALGISIPSITLEKISKDLSEDSFSALERLLEKLKKKGKKVIIVIDEFQYLA 131 (234)
T ss_dssp HHHHHHHCCTSTTEEEECTS-GG-G--HHHHHHHHHHCHCCEEEEEETGGGGG
T ss_pred HHHHhhhcccccchhhhhcchhhHHHHHHHHHHHHHhcCCcEEEEEecHHHHh
Confidence 11111110 0 112333445566666653 345999999998776
No 11
>PF13191 AAA_16: AAA ATPase domain; PDB: 2V1U_A.
Probab=99.24 E-value=7.1e-11 Score=85.30 Aligned_cols=60 Identities=20% Similarity=0.321 Sum_probs=39.6
Q ss_pred cccchHHHHHHHHHHhc---cCCccEEEEEeCCCCcHHHHHHHHHhHHhhhhcccceEEEEecCC
Q 035585 27 AFKSRLSTLKSIQDALT---DVNVNIVGVYGMGGIGKTTLVKEFARQASEEKLFDQVVFSEVSQT 88 (183)
Q Consensus 27 ~~~gR~~~l~~l~~~l~---~~~~~~v~i~G~~G~GKTtL~~~~~~~~~~~~~~~~~~~~~~~~~ 88 (183)
.|+||+++++.+...+. ....+.++|+|++|+|||+|++.+...+.....+ ++..++...
T Consensus 1 ~fvgR~~e~~~l~~~l~~~~~~~~~~~ll~G~~G~GKT~ll~~~~~~~~~~~~~--~~~~~~~~~ 63 (185)
T PF13191_consen 1 QFVGREEEIERLRDLLDAAQSGSPRNLLLTGESGSGKTSLLRALLDRLAERGGY--VISINCDDS 63 (185)
T ss_dssp --TT-HHHHHHHHHTTGGTSS-----EEE-B-TTSSHHHHHHHHHHHHHHHT----EEEEEEETT
T ss_pred CCCCHHHHHHHHHHHHHHHHcCCCcEEEEECCCCCCHHHHHHHHHHHHHhcCCE--EEEEEEecc
Confidence 38999999999999983 5567899999999999999999999988876222 444444444
No 12
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=99.21 E-value=3.8e-10 Score=86.41 Aligned_cols=93 Identities=20% Similarity=0.304 Sum_probs=59.8
Q ss_pred cCCccEEEEEeCCCCcHHHHHHHHHhHHhhhhcccceEEEEecCCcCHHHHHHHHHHHhCCCchhHHHHHHHHHH----H
Q 035585 44 DVNVNIVGVYGMGGIGKTTLVKEFARQASEEKLFDQVVFSEVSQTPDIKKIHGEIAEKLGLEFSEEAESRRASRL----Y 119 (183)
Q Consensus 44 ~~~~~~v~i~G~~G~GKTtL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~----~ 119 (183)
..+.+.++|+|++|+||||+++.++..+..... ...++ .....+..+++..++..++..............+ .
T Consensus 40 ~~~~~~~~l~G~~G~GKTtl~~~l~~~l~~~~~--~~~~~-~~~~~~~~~~l~~i~~~lG~~~~~~~~~~~~~~l~~~l~ 116 (269)
T TIGR03015 40 SQREGFILITGEVGAGKTTLIRNLLKRLDQERV--VAAKL-VNTRVDAEDLLRMVAADFGLETEGRDKAALLRELEDFLI 116 (269)
T ss_pred hcCCCEEEEEcCCCCCHHHHHHHHHHhcCCCCe--EEeee-eCCCCCHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHH
Confidence 344578999999999999999999888764211 11222 2333455678888888887654332222222222 2
Q ss_pred HHHhcCCeEEEEEeCCCCcc
Q 035585 120 ERLKKEKMILVILDNIWKYL 139 (183)
Q Consensus 120 ~~~~~~~~~llvlD~~~~~~ 139 (183)
.....+++.+||+||+|.+.
T Consensus 117 ~~~~~~~~~vliiDe~~~l~ 136 (269)
T TIGR03015 117 EQFAAGKRALLVVDEAQNLT 136 (269)
T ss_pred HHHhCCCCeEEEEECcccCC
Confidence 23345788999999999764
No 13
>PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins. TniB is a probable ATP-binding protein [] which is involved in Tn5053 mercury resistance transposition [].
Probab=99.20 E-value=2.2e-10 Score=87.92 Aligned_cols=117 Identities=16% Similarity=0.303 Sum_probs=88.1
Q ss_pred CCCcccccchHHHHHHHHHHhc---cCCccEEEEEeCCCCcHHHHHHHHHhHHhhhh----cccceEEEEecCCcCHHHH
Q 035585 22 NKGYEAFKSRLSTLKSIQDALT---DVNVNIVGVYGMGGIGKTTLVKEFARQASEEK----LFDQVVFSEVSQTPDIKKI 94 (183)
Q Consensus 22 ~~~~~~~~gR~~~l~~l~~~l~---~~~~~~v~i~G~~G~GKTtL~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~ 94 (183)
.+.=.++-.-.+.++.|.+.+. ..+.+.++|+|++|.|||++++.+...+.... ....++++.++..++...+
T Consensus 33 ~~rWIgY~~A~~~L~~L~~Ll~~P~~~Rmp~lLivG~snnGKT~Ii~rF~~~hp~~~d~~~~~~PVv~vq~P~~p~~~~~ 112 (302)
T PF05621_consen 33 ADRWIGYPRAKEALDRLEELLEYPKRHRMPNLLIVGDSNNGKTMIIERFRRLHPPQSDEDAERIPVVYVQMPPEPDERRF 112 (302)
T ss_pred cCCeecCHHHHHHHHHHHHHHhCCcccCCCceEEecCCCCcHHHHHHHHHHHCCCCCCCCCccccEEEEecCCCCChHHH
Confidence 3344444445666777777665 56778999999999999999999988775431 1125889999999999999
Q ss_pred HHHHHHHhCCCchhH-HHHHHHHHHHHHHhcCCeEEEEEeCCCCc
Q 035585 95 HGEIAEKLGLEFSEE-AESRRASRLYERLKKEKMILVILDNIWKY 138 (183)
Q Consensus 95 ~~~i~~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~llvlD~~~~~ 138 (183)
+..|++.++.+.... ............++.-+.-+|||||+++.
T Consensus 113 Y~~IL~~lgaP~~~~~~~~~~~~~~~~llr~~~vrmLIIDE~H~l 157 (302)
T PF05621_consen 113 YSAILEALGAPYRPRDRVAKLEQQVLRLLRRLGVRMLIIDEFHNL 157 (302)
T ss_pred HHHHHHHhCcccCCCCCHHHHHHHHHHHHHHcCCcEEEeechHHH
Confidence 999999999887553 33333445556667678999999999976
No 14
>PRK04841 transcriptional regulator MalT; Provisional
Probab=99.19 E-value=2e-10 Score=101.38 Aligned_cols=138 Identities=15% Similarity=0.199 Sum_probs=92.0
Q ss_pred hhhcCCCcccccchHHHHHHHHHHhccCCccEEEEEeCCCCcHHHHHHHHHhHHhhhhcccceEEEEec-CCcCHHHHHH
Q 035585 18 WLKSNKGYEAFKSRLSTLKSIQDALTDVNVNIVGVYGMGGIGKTTLVKEFARQASEEKLFDQVVFSEVS-QTPDIKKIHG 96 (183)
Q Consensus 18 ~~~~~~~~~~~~gR~~~l~~l~~~l~~~~~~~v~i~G~~G~GKTtL~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~ 96 (183)
...||+.+..++.|.+.++.|... ...++++|+||+|.||||++.++.... ..+.|+++. .+.+...++.
T Consensus 6 k~~~p~~~~~~~~R~rl~~~l~~~---~~~~~~~v~apaG~GKTtl~~~~~~~~------~~~~w~~l~~~d~~~~~f~~ 76 (903)
T PRK04841 6 KLSRPVRLHNTVVRERLLAKLSGA---NNYRLVLVTSPAGYGKTTLISQWAAGK------NNLGWYSLDESDNQPERFAS 76 (903)
T ss_pred ccCCCCCccccCcchHHHHHHhcc---cCCCeEEEECCCCCCHHHHHHHHHHhC------CCeEEEecCcccCCHHHHHH
Confidence 345777888999999998888653 456899999999999999999988531 258899886 4455566777
Q ss_pred HHHHHhCCCchh----H----------HHHHHHHHHHHHHhc-CCeEEEEEeCCCCccc--cc-ccCcCCCCCCCCcEEE
Q 035585 97 EIAEKLGLEFSE----E----------AESRRASRLYERLKK-EKMILVILDNIWKYLD--LE-TVGIPFGDDHRGCKLL 158 (183)
Q Consensus 97 ~i~~~l~~~~~~----~----------~~~~~~~~~~~~~~~-~~~~llvlD~~~~~~~--~~-~l~~~~~~~~~~~~ii 158 (183)
.++..+....+. . ........+...+.. +.+++|||||++..++ .. .+...+.....+.+++
T Consensus 77 ~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~lvlDD~h~~~~~~~~~~l~~l~~~~~~~~~lv 156 (903)
T PRK04841 77 YLIAALQQATNGHCSKSEALAQKRQYASLSSLFAQLFIELADWHQPLYLVIDDYHLITNPEIHEAMRFFLRHQPENLTLV 156 (903)
T ss_pred HHHHHHHHhcCcccchhhhhhccCCcCCHHHHHHHHHHHHhcCCCCEEEEEeCcCcCCChHHHHHHHHHHHhCCCCeEEE
Confidence 776666311111 0 111223344444443 7899999999987642 12 2322333345577888
Q ss_pred EEecCh
Q 035585 159 LTARDC 164 (183)
Q Consensus 159 itsr~~ 164 (183)
+|||..
T Consensus 157 ~~sR~~ 162 (903)
T PRK04841 157 VLSRNL 162 (903)
T ss_pred EEeCCC
Confidence 999974
No 15
>PTZ00112 origin recognition complex 1 protein; Provisional
Probab=99.16 E-value=7.6e-10 Score=95.09 Aligned_cols=119 Identities=18% Similarity=0.133 Sum_probs=82.5
Q ss_pred cCCCcccccchHHHHHHHHHHhc----cC-CccEEEEEeCCCCcHHHHHHHHHhHHhhhh----cc-cceEEEEecCCcC
Q 035585 21 SNKGYEAFKSRLSTLKSIQDALT----DV-NVNIVGVYGMGGIGKTTLVKEFARQASEEK----LF-DQVVFSEVSQTPD 90 (183)
Q Consensus 21 ~~~~~~~~~gR~~~l~~l~~~l~----~~-~~~~v~i~G~~G~GKTtL~~~~~~~~~~~~----~~-~~~~~~~~~~~~~ 90 (183)
+---|..+.+|++|++.|...|. .. +..++.|+|++|+|||++++.+..++.... .. ..+++++|.....
T Consensus 750 ~DYVPD~LPhREeEIeeLasfL~paIkgsgpnnvLYIyG~PGTGKTATVK~VLrELqeeaeqk~lp~f~vVYINCm~Lst 829 (1164)
T PTZ00112 750 LDVVPKYLPCREKEIKEVHGFLESGIKQSGSNQILYISGMPGTGKTATVYSVIQLLQHKTKQKLLPSFNVFEINGMNVVH 829 (1164)
T ss_pred cccCCCcCCChHHHHHHHHHHHHHHHhcCCCCceEEEECCCCCCHHHHHHHHHHHHHHHHhhccCCCceEEEEeCCccCC
Confidence 33445678999999999998876 22 234567999999999999999998885421 11 2367889888777
Q ss_pred HHHHHHHHHHHhCCCchh--HHHHHHHHHHHHHHhc--CCeEEEEEeCCCCcc
Q 035585 91 IKKIHGEIAEKLGLEFSE--EAESRRASRLYERLKK--EKMILVILDNIWKYL 139 (183)
Q Consensus 91 ~~~~~~~i~~~l~~~~~~--~~~~~~~~~~~~~~~~--~~~~llvlD~~~~~~ 139 (183)
...++..|..++....+. ......+..++..+.. ....+|||||+|.+.
T Consensus 830 p~sIYqvI~qqL~g~~P~~GlsS~evLerLF~~L~k~~r~v~IIILDEID~L~ 882 (1164)
T PTZ00112 830 PNAAYQVLYKQLFNKKPPNALNSFKILDRLFNQNKKDNRNVSILIIDEIDYLI 882 (1164)
T ss_pred HHHHHHHHHHHHcCCCCCccccHHHHHHHHHhhhhcccccceEEEeehHhhhC
Confidence 788888888888433332 1223344555554422 335699999999664
No 16
>PLN03025 replication factor C subunit; Provisional
Probab=99.11 E-value=4.2e-10 Score=88.46 Aligned_cols=134 Identities=15% Similarity=0.095 Sum_probs=80.0
Q ss_pred hhhhcCCCcccccchHHHHHHHHHHhccCCccEEEEEeCCCCcHHHHHHHHHhHHhhhhcccceEEEEecCCcCHHHHHH
Q 035585 17 VWLKSNKGYEAFKSRLSTLKSIQDALTDVNVNIVGVYGMGGIGKTTLVKEFARQASEEKLFDQVVFSEVSQTPDIKKIHG 96 (183)
Q Consensus 17 ~~~~~~~~~~~~~gR~~~l~~l~~~l~~~~~~~v~i~G~~G~GKTtL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 (183)
.....|.....++|....+..|..++.+.+.+.+.++|++|+||||++..+++.+....+...++-++.+...... ..+
T Consensus 4 ~~kyrP~~l~~~~g~~~~~~~L~~~~~~~~~~~lll~Gp~G~GKTtla~~la~~l~~~~~~~~~~eln~sd~~~~~-~vr 82 (319)
T PLN03025 4 VEKYRPTKLDDIVGNEDAVSRLQVIARDGNMPNLILSGPPGTGKTTSILALAHELLGPNYKEAVLELNASDDRGID-VVR 82 (319)
T ss_pred hhhcCCCCHHHhcCcHHHHHHHHHHHhcCCCceEEEECCCCCCHHHHHHHHHHHHhcccCccceeeecccccccHH-HHH
Confidence 3445677777889999999999988887777778999999999999999999887543211223333333222211 111
Q ss_pred HHHHHhCCCchhHHHHHHHHHHHHHHhcCCeEEEEEeCCCCcc--cccccCcCCCCCCCCcEEEEEecCh
Q 035585 97 EIAEKLGLEFSEEAESRRASRLYERLKKEKMILVILDNIWKYL--DLETVGIPFGDDHRGCKLLLTARDC 164 (183)
Q Consensus 97 ~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~llvlD~~~~~~--~~~~l~~~~~~~~~~~~iiitsr~~ 164 (183)
.+...+. .........+..+++|||+|.+. ....+...+......+++++++...
T Consensus 83 ~~i~~~~-------------~~~~~~~~~~~kviiiDE~d~lt~~aq~aL~~~lE~~~~~t~~il~~n~~ 139 (319)
T PLN03025 83 NKIKMFA-------------QKKVTLPPGRHKIVILDEADSMTSGAQQALRRTMEIYSNTTRFALACNTS 139 (319)
T ss_pred HHHHHHH-------------hccccCCCCCeEEEEEechhhcCHHHHHHHHHHHhcccCCceEEEEeCCc
Confidence 1111100 00000112457899999999774 2334434343334566777777543
No 17
>PF13173 AAA_14: AAA domain
Probab=99.11 E-value=2.3e-10 Score=78.26 Aligned_cols=103 Identities=21% Similarity=0.281 Sum_probs=70.5
Q ss_pred ccEEEEEeCCCCcHHHHHHHHHhHHhhhhcccceEEEEecCCcCHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHHhcCC
Q 035585 47 VNIVGVYGMGGIGKTTLVKEFARQASEEKLFDQVVFSEVSQTPDIKKIHGEIAEKLGLEFSEEAESRRASRLYERLKKEK 126 (183)
Q Consensus 47 ~~~v~i~G~~G~GKTtL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 126 (183)
.++++|.|+.|+||||++++++..+.. ...++|+++.......... ......+.+.. ..+
T Consensus 2 ~~~~~l~G~R~vGKTtll~~~~~~~~~---~~~~~yi~~~~~~~~~~~~----------------~~~~~~~~~~~-~~~ 61 (128)
T PF13173_consen 2 RKIIILTGPRGVGKTTLLKQLAKDLLP---PENILYINFDDPRDRRLAD----------------PDLLEYFLELI-KPG 61 (128)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHhcc---cccceeeccCCHHHHHHhh----------------hhhHHHHHHhh-ccC
Confidence 368999999999999999999987761 3446777766543311000 00111222222 247
Q ss_pred eEEEEEeCCCCcccccccCcCCCCCCCCcEEEEEecChHHHhh
Q 035585 127 MILVILDNIWKYLDLETVGIPFGDDHRGCKLLLTARDCNVLLN 169 (183)
Q Consensus 127 ~~llvlD~~~~~~~~~~l~~~~~~~~~~~~iiitsr~~~~~~~ 169 (183)
..+|+|||++...+|......+.+..+..++++|+........
T Consensus 62 ~~~i~iDEiq~~~~~~~~lk~l~d~~~~~~ii~tgS~~~~l~~ 104 (128)
T PF13173_consen 62 KKYIFIDEIQYLPDWEDALKFLVDNGPNIKIILTGSSSSLLSK 104 (128)
T ss_pred CcEEEEehhhhhccHHHHHHHHHHhccCceEEEEccchHHHhh
Confidence 8899999999998887777777666667889999998877653
No 18
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=99.10 E-value=7e-10 Score=94.27 Aligned_cols=147 Identities=14% Similarity=0.207 Sum_probs=84.0
Q ss_pred hhhcCCCcccccchHHHHHHHHHHhccCC-ccEEEEEeCCCCcHHHHHHHHHhHHhhhhcccceEEEEecCCcCHHHHHH
Q 035585 18 WLKSNKGYEAFKSRLSTLKSIQDALTDVN-VNIVGVYGMGGIGKTTLVKEFARQASEEKLFDQVVFSEVSQTPDIKKIHG 96 (183)
Q Consensus 18 ~~~~~~~~~~~~gR~~~l~~l~~~l~~~~-~~~v~i~G~~G~GKTtL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 (183)
....|.....++|.+..++.|.+++.+.+ .+.++++|+.|+||||+++.+.+.+........ ..|........+..
T Consensus 8 rKYRPqtFdEVIGQe~Vv~~L~~aL~~gRL~HAyLFtGPpGvGKTTlAriLAKaLnCe~~~~~---~PCG~C~sCr~I~~ 84 (830)
T PRK07003 8 RKWRPKDFASLVGQEHVVRALTHALDGGRLHHAYLFTGTRGVGKTTLSRIFAKALNCETGVTS---QPCGVCRACREIDE 84 (830)
T ss_pred HHhCCCcHHHHcCcHHHHHHHHHHHhcCCCCeEEEEECCCCCCHHHHHHHHHHHhcCccCCCC---CCCcccHHHHHHhc
Confidence 34566777889999999999999988655 456789999999999999999987753211100 00000000000000
Q ss_pred H-HHHHhCCCchhHHHHHHHHHHHHHH----hcCCeEEEEEeCCCCcc--cccccCcCCCCCCCCcEEEEEecChHHH
Q 035585 97 E-IAEKLGLEFSEEAESRRASRLYERL----KKEKMILVILDNIWKYL--DLETVGIPFGDDHRGCKLLLTARDCNVL 167 (183)
Q Consensus 97 ~-i~~~l~~~~~~~~~~~~~~~~~~~~----~~~~~~llvlD~~~~~~--~~~~l~~~~~~~~~~~~iiitsr~~~~~ 167 (183)
. ..+-+..........+.++.+++.. ...+..++||||+|.+. .++.|+..+.....++++|++|.+.+-+
T Consensus 85 G~h~DviEIDAas~rgVDdIReLIe~a~~~P~~gr~KVIIIDEah~LT~~A~NALLKtLEEPP~~v~FILaTtd~~KI 162 (830)
T PRK07003 85 GRFVDYVEMDAASNRGVDEMAALLERAVYAPVDARFKVYMIDEVHMLTNHAFNAMLKTLEEPPPHVKFILATTDPQKI 162 (830)
T ss_pred CCCceEEEecccccccHHHHHHHHHHHHhccccCCceEEEEeChhhCCHHHHHHHHHHHHhcCCCeEEEEEECChhhc
Confidence 0 0000000000000011122222222 12456799999999875 3666767666666688888888876543
No 19
>PRK12402 replication factor C small subunit 2; Reviewed
Probab=99.08 E-value=1e-09 Score=86.64 Aligned_cols=71 Identities=18% Similarity=0.110 Sum_probs=53.1
Q ss_pred hhhhhcCCCcccccchHHHHHHHHHHhccCCccEEEEEeCCCCcHHHHHHHHHhHHhhhhcccceEEEEec
Q 035585 16 EVWLKSNKGYEAFKSRLSTLKSIQDALTDVNVNIVGVYGMGGIGKTTLVKEFARQASEEKLFDQVVFSEVS 86 (183)
Q Consensus 16 ~~~~~~~~~~~~~~gR~~~l~~l~~~l~~~~~~~v~i~G~~G~GKTtL~~~~~~~~~~~~~~~~~~~~~~~ 86 (183)
+.....|.....++|++...+.+..++.+...+.+.++||+|+|||++|+.+++.+.........+++++.
T Consensus 5 w~~ky~P~~~~~~~g~~~~~~~L~~~~~~~~~~~lll~Gp~GtGKT~la~~~~~~l~~~~~~~~~~~i~~~ 75 (337)
T PRK12402 5 WTEKYRPALLEDILGQDEVVERLSRAVDSPNLPHLLVQGPPGSGKTAAVRALARELYGDPWENNFTEFNVA 75 (337)
T ss_pred hHHhhCCCcHHHhcCCHHHHHHHHHHHhCCCCceEEEECCCCCCHHHHHHHHHHHhcCcccccceEEechh
Confidence 33444566678899999999999999887666678999999999999999999887543111234455543
No 20
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=99.08 E-value=1.5e-09 Score=92.42 Aligned_cols=143 Identities=17% Similarity=0.198 Sum_probs=100.4
Q ss_pred hhhhcCCCcccccchHHHHHHHHHHhccCCccEEEEEeCCCCcHHHHHHHHHhHHhhhhcccceEEEEecC-CcCHHHHH
Q 035585 17 VWLKSNKGYEAFKSRLSTLKSIQDALTDVNVNIVGVYGMGGIGKTTLVKEFARQASEEKLFDQVVFSEVSQ-TPDIKKIH 95 (183)
Q Consensus 17 ~~~~~~~~~~~~~gR~~~l~~l~~~l~~~~~~~v~i~G~~G~GKTtL~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~ 95 (183)
....||..+..++.|.+.++.|.+. ...+.++|..|.|.|||||+.++...... ...+.|+++.. +.+...++
T Consensus 10 sk~~~P~~~~~~v~R~rL~~~L~~~---~~~RL~li~APAGfGKttl~aq~~~~~~~---~~~v~Wlslde~dndp~rF~ 83 (894)
T COG2909 10 SKLVRPVRPDNYVVRPRLLDRLRRA---NDYRLILISAPAGFGKTTLLAQWRELAAD---GAAVAWLSLDESDNDPARFL 83 (894)
T ss_pred cccCCCCCcccccccHHHHHHHhcC---CCceEEEEeCCCCCcHHHHHHHHHHhcCc---ccceeEeecCCccCCHHHHH
Confidence 3344566688889999988888774 46799999999999999999999883332 34589998874 46788899
Q ss_pred HHHHHHhCCCchhHHHHH--------------HHHHHHHHHhc-CCeEEEEEeCCCCcc--c-ccccCcCCCCCCCCcEE
Q 035585 96 GEIAEKLGLEFSEEAESR--------------RASRLYERLKK-EKMILVILDNIWKYL--D-LETVGIPFGDDHRGCKL 157 (183)
Q Consensus 96 ~~i~~~l~~~~~~~~~~~--------------~~~~~~~~~~~-~~~~llvlD~~~~~~--~-~~~l~~~~~~~~~~~~i 157 (183)
+.++..+....|...+.. .+..++..+.. .+++.|||||.+-.. . ...+...+...+++.++
T Consensus 84 ~yLi~al~~~~p~~~~~a~~l~q~~~~~~l~~l~~~L~~Ela~~~~pl~LVlDDyHli~~~~l~~~l~fLl~~~P~~l~l 163 (894)
T COG2909 84 SYLIAALQQATPTLGDEAQTLLQKHQYVSLESLLSSLLNELASYEGPLYLVLDDYHLISDPALHEALRFLLKHAPENLTL 163 (894)
T ss_pred HHHHHHHHHhCccccHHHHHHHHhcccccHHHHHHHHHHHHHhhcCceEEEeccccccCcccHHHHHHHHHHhCCCCeEE
Confidence 999888875555432221 23334443332 578999999987543 2 22333334455668999
Q ss_pred EEEecChH
Q 035585 158 LLTARDCN 165 (183)
Q Consensus 158 iitsr~~~ 165 (183)
++|||...
T Consensus 164 vv~SR~rP 171 (894)
T COG2909 164 VVTSRSRP 171 (894)
T ss_pred EEEeccCC
Confidence 99999765
No 21
>PTZ00202 tuzin; Provisional
Probab=99.07 E-value=2.3e-09 Score=86.13 Aligned_cols=106 Identities=21% Similarity=0.237 Sum_probs=71.8
Q ss_pred hcCCCcccccchHHHHHHHHHHhcc---CCccEEEEEeCCCCcHHHHHHHHHhHHhhhhcccceEEEEecCCcCHHHHHH
Q 035585 20 KSNKGYEAFKSRLSTLKSIQDALTD---VNVNIVGVYGMGGIGKTTLVKEFARQASEEKLFDQVVFSEVSQTPDIKKIHG 96 (183)
Q Consensus 20 ~~~~~~~~~~gR~~~l~~l~~~l~~---~~~~~v~i~G~~G~GKTtL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 (183)
.-|++...|+||++++..|...+.+ ..++++.|+|++|+|||||++.+..... ...++++.. +..+++.
T Consensus 256 ~lPa~~~~FVGReaEla~Lr~VL~~~d~~~privvLtG~~G~GKTTLlR~~~~~l~-----~~qL~vNpr---g~eElLr 327 (550)
T PTZ00202 256 SAPAVIRQFVSREAEESWVRQVLRRLDTAHPRIVVFTGFRGCGKSSLCRSAVRKEG-----MPAVFVDVR---GTEDTLR 327 (550)
T ss_pred CCCCCccCCCCcHHHHHHHHHHHhccCCCCceEEEEECCCCCCHHHHHHHHHhcCC-----ceEEEECCC---CHHHHHH
Confidence 3467788999999999999998862 2446899999999999999999986654 113333333 5689999
Q ss_pred HHHHHhCCCchhHH--HHHHHHH-HHHHHhc-CCeEEEEEe
Q 035585 97 EIAEKLGLEFSEEA--ESRRASR-LYERLKK-EKMILVILD 133 (183)
Q Consensus 97 ~i~~~l~~~~~~~~--~~~~~~~-~~~~~~~-~~~~llvlD 133 (183)
.++..|+....... ....+.. +...... +++.+|||-
T Consensus 328 ~LL~ALGV~p~~~k~dLLrqIqeaLl~~~~e~GrtPVLII~ 368 (550)
T PTZ00202 328 SVVKALGVPNVEACGDLLDFISEACRRAKKMNGETPLLVLK 368 (550)
T ss_pred HHHHHcCCCCcccHHHHHHHHHHHHHHHHHhCCCCEEEEEE
Confidence 99999997433221 1122222 2232233 556666654
No 22
>PRK00440 rfc replication factor C small subunit; Reviewed
Probab=99.05 E-value=2.5e-09 Score=83.82 Aligned_cols=133 Identities=12% Similarity=0.094 Sum_probs=79.5
Q ss_pred chhhhhhcCCCcccccchHHHHHHHHHHhccCCccEEEEEeCCCCcHHHHHHHHHhHHhhhhcccceEEEEecCCcCHHH
Q 035585 14 AEEVWLKSNKGYEAFKSRLSTLKSIQDALTDVNVNIVGVYGMGGIGKTTLVKEFARQASEEKLFDQVVFSEVSQTPDIKK 93 (183)
Q Consensus 14 ~~~~~~~~~~~~~~~~gR~~~l~~l~~~l~~~~~~~v~i~G~~G~GKTtL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 93 (183)
..+.....|.....++|++..++.+..++.....+.+.++|++|+|||++++.++..+.........+.++.+.......
T Consensus 5 ~~w~~kyrP~~~~~~~g~~~~~~~l~~~i~~~~~~~~ll~G~~G~GKt~~~~~l~~~l~~~~~~~~~i~~~~~~~~~~~~ 84 (319)
T PRK00440 5 EIWVEKYRPRTLDEIVGQEEIVERLKSYVKEKNMPHLLFAGPPGTGKTTAALALARELYGEDWRENFLELNASDERGIDV 84 (319)
T ss_pred CccchhhCCCcHHHhcCcHHHHHHHHHHHhCCCCCeEEEECCCCCCHHHHHHHHHHHHcCCccccceEEeccccccchHH
Confidence 33444555666777899999999999998876666789999999999999999998875432211222223222222111
Q ss_pred HHHHHHHHhCCCchhHHHHHHHHHHHHHH--hcCCeEEEEEeCCCCccc--ccccCcCCCCCCCCcEEEEEecC
Q 035585 94 IHGEIAEKLGLEFSEEAESRRASRLYERL--KKEKMILVILDNIWKYLD--LETVGIPFGDDHRGCKLLLTARD 163 (183)
Q Consensus 94 ~~~~i~~~l~~~~~~~~~~~~~~~~~~~~--~~~~~~llvlD~~~~~~~--~~~l~~~~~~~~~~~~iiitsr~ 163 (183)
....+. .+.... ....+.+|++||++.+.. ...+...+......+.+|+++..
T Consensus 85 -~~~~i~----------------~~~~~~~~~~~~~~vviiDe~~~l~~~~~~~L~~~le~~~~~~~lIl~~~~ 141 (319)
T PRK00440 85 -IRNKIK----------------EFARTAPVGGAPFKIIFLDEADNLTSDAQQALRRTMEMYSQNTRFILSCNY 141 (319)
T ss_pred -HHHHHH----------------HHHhcCCCCCCCceEEEEeCcccCCHHHHHHHHHHHhcCCCCCeEEEEeCC
Confidence 111111 111111 113467999999986632 33343444444455667776643
No 23
>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B.
Probab=99.05 E-value=2.6e-09 Score=78.82 Aligned_cols=64 Identities=19% Similarity=0.183 Sum_probs=43.4
Q ss_pred cccchhhhhhcCCCcccccchHHHHHHHHHHhc-----cCCccEEEEEeCCCCcHHHHHHHHHhHHhhh
Q 035585 11 RTIAEEVWLKSNKGYEAFKSRLSTLKSIQDALT-----DVNVNIVGVYGMGGIGKTTLVKEFARQASEE 74 (183)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~gR~~~l~~l~~~l~-----~~~~~~v~i~G~~G~GKTtL~~~~~~~~~~~ 74 (183)
+...+-....-|.....|+|.+..++.+.-++. +.....+.+|||+|+||||||..+++.+...
T Consensus 9 ~~~~~l~~~lRP~~L~efiGQ~~l~~~l~i~i~aa~~r~~~l~h~lf~GPPG~GKTTLA~IIA~e~~~~ 77 (233)
T PF05496_consen 9 EEEAPLAERLRPKSLDEFIGQEHLKGNLKILIRAAKKRGEALDHMLFYGPPGLGKTTLARIIANELGVN 77 (233)
T ss_dssp ---S-HHHHTS-SSCCCS-S-HHHHHHHHHHHHHHHCTTS---EEEEESSTTSSHHHHHHHHHHHCT--
T ss_pred CcchhhHHhcCCCCHHHccCcHHHHhhhHHHHHHHHhcCCCcceEEEECCCccchhHHHHHHHhccCCC
Confidence 334444556677888999999999988776554 3456789999999999999999999988765
No 24
>PRK12323 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.02 E-value=3.2e-09 Score=89.14 Aligned_cols=145 Identities=12% Similarity=0.210 Sum_probs=83.7
Q ss_pred hhhhcCCCcccccchHHHHHHHHHHhccCCc-cEEEEEeCCCCcHHHHHHHHHhHHhhhhcc--cceEEEEecCCcCHHH
Q 035585 17 VWLKSNKGYEAFKSRLSTLKSIQDALTDVNV-NIVGVYGMGGIGKTTLVKEFARQASEEKLF--DQVVFSEVSQTPDIKK 93 (183)
Q Consensus 17 ~~~~~~~~~~~~~gR~~~l~~l~~~l~~~~~-~~v~i~G~~G~GKTtL~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~ 93 (183)
.....|.....++|.+..++.|.+++.+.+. +.++++|+.|+||||+++.+.+.+...... .....--|... .
T Consensus 7 arKYRPqtFddVIGQe~vv~~L~~al~~gRLpHA~LFtGP~GvGKTTLAriLAkaLnC~~p~~~~g~~~~PCG~C----~ 82 (700)
T PRK12323 7 ARKWRPRDFTTLVGQEHVVRALTHALEQQRLHHAYLFTGTRGVGKTTLSRILAKSLNCTGADGEGGITAQPCGQC----R 82 (700)
T ss_pred HHHhCCCcHHHHcCcHHHHHHHHHHHHhCCCceEEEEECCCCCCHHHHHHHHHHHhcCCCccccccCCCCCCccc----H
Confidence 3445677778899999999999999986554 457999999999999999999887542100 00000000000 0
Q ss_pred HHHHHH-----HHhCCCchhHHHHHHHHHHHHHH----hcCCeEEEEEeCCCCcc--cccccCcCCCCCCCCcEEEEEec
Q 035585 94 IHGEIA-----EKLGLEFSEEAESRRASRLYERL----KKEKMILVILDNIWKYL--DLETVGIPFGDDHRGCKLLLTAR 162 (183)
Q Consensus 94 ~~~~i~-----~~l~~~~~~~~~~~~~~~~~~~~----~~~~~~llvlD~~~~~~--~~~~l~~~~~~~~~~~~iiitsr 162 (183)
.+..|. +.+..........+.++.+.+.+ ..++..++||||+|.+. ..+.|+..+.....++.+|++|.
T Consensus 83 sC~~I~aG~hpDviEIdAas~~gVDdIReLie~~~~~P~~gr~KViIIDEah~Ls~~AaNALLKTLEEPP~~v~FILaTt 162 (700)
T PRK12323 83 ACTEIDAGRFVDYIEMDAASNRGVDEMAQLLDKAVYAPTAGRFKVYMIDEVHMLTNHAFNAMLKTLEEPPEHVKFILATT 162 (700)
T ss_pred HHHHHHcCCCCcceEecccccCCHHHHHHHHHHHHhchhcCCceEEEEEChHhcCHHHHHHHHHhhccCCCCceEEEEeC
Confidence 011110 00000000000111122222222 23567899999999774 46677676666666778777777
Q ss_pred ChH
Q 035585 163 DCN 165 (183)
Q Consensus 163 ~~~ 165 (183)
+.+
T Consensus 163 ep~ 165 (700)
T PRK12323 163 DPQ 165 (700)
T ss_pred ChH
Confidence 655
No 25
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=99.01 E-value=3.6e-09 Score=83.49 Aligned_cols=113 Identities=19% Similarity=0.260 Sum_probs=69.9
Q ss_pred cCCCcccccchHHHH---HHHHHHhccCCccEEEEEeCCCCcHHHHHHHHHhHHhhhhcccceEEEEecCCcCHHHHHHH
Q 035585 21 SNKGYEAFKSRLSTL---KSIQDALTDVNVNIVGVYGMGGIGKTTLVKEFARQASEEKLFDQVVFSEVSQTPDIKKIHGE 97 (183)
Q Consensus 21 ~~~~~~~~~gR~~~l---~~l~~~l~~~~~~~v~i~G~~G~GKTtL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 97 (183)
.|..-..++|.+-.+ .-|..++...+...+.+|||||+||||||+.+....... |..++...+-..-.+.
T Consensus 19 RP~~lde~vGQ~HLlg~~~~lrr~v~~~~l~SmIl~GPPG~GKTTlA~liA~~~~~~-------f~~~sAv~~gvkdlr~ 91 (436)
T COG2256 19 RPKSLDEVVGQEHLLGEGKPLRRAVEAGHLHSMILWGPPGTGKTTLARLIAGTTNAA-------FEALSAVTSGVKDLRE 91 (436)
T ss_pred CCCCHHHhcChHhhhCCCchHHHHHhcCCCceeEEECCCCCCHHHHHHHHHHhhCCc-------eEEeccccccHHHHHH
Confidence 355555667766555 445566667888999999999999999999999865543 2333332222222222
Q ss_pred HHHHhCCCchhHHHHHHHHHHHHHHhcCCeEEEEEeCCCCc--ccccccCcCCCCCCCCcEEEE
Q 035585 98 IAEKLGLEFSEEAESRRASRLYERLKKEKMILVILDNIWKY--LDLETVGIPFGDDHRGCKLLL 159 (183)
Q Consensus 98 i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~llvlD~~~~~--~~~~~l~~~~~~~~~~~~iii 159 (183)
++ +........+++.+|++||+|.. .+.+.+++.+.+ |..++|
T Consensus 92 i~----------------e~a~~~~~~gr~tiLflDEIHRfnK~QQD~lLp~vE~---G~iilI 136 (436)
T COG2256 92 II----------------EEARKNRLLGRRTILFLDEIHRFNKAQQDALLPHVEN---GTIILI 136 (436)
T ss_pred HH----------------HHHHHHHhcCCceEEEEehhhhcChhhhhhhhhhhcC---CeEEEE
Confidence 22 22223333488999999999965 355555554443 554444
No 26
>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]
Probab=98.98 E-value=3e-09 Score=88.34 Aligned_cols=131 Identities=18% Similarity=0.189 Sum_probs=82.2
Q ss_pred CccEEEEEeCCCCcHHHHHHHHHhHHhhhh---cc---cceEEEEecCC-----cCH------------HHHHHHHHHHh
Q 035585 46 NVNIVGVYGMGGIGKTTLVKEFARQASEEK---LF---DQVVFSEVSQT-----PDI------------KKIHGEIAEKL 102 (183)
Q Consensus 46 ~~~~v~i~G~~G~GKTtL~~~~~~~~~~~~---~~---~~~~~~~~~~~-----~~~------------~~~~~~i~~~l 102 (183)
+..-|+|+|++|+|||||++.+........ .. ..+.|+.-... ... ....+.++.++
T Consensus 347 ~g~riaiiG~NG~GKSTLlk~l~g~~~~~~G~v~~g~~v~igyf~Q~~~~l~~~~t~~d~l~~~~~~~~e~~~r~~L~~f 426 (530)
T COG0488 347 RGDRIAIVGPNGAGKSTLLKLLAGELGPLSGTVKVGETVKIGYFDQHRDELDPDKTVLEELSEGFPDGDEQEVRAYLGRF 426 (530)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhhhcccCCceEEeCCceEEEEEEehhhhcCccCcHHHHHHhhCccccHHHHHHHHHHc
Confidence 446799999999999999999976664320 01 11233221110 001 23444455555
Q ss_pred CCCchh-------HHHHHHHHHHHHHHhcCCeEEEEEeCCCCcccccccC--cCCCCCCCCcEEEEEecChHHHhhcCCC
Q 035585 103 GLEFSE-------EAESRRASRLYERLKKEKMILVILDNIWKYLDLETVG--IPFGDDHRGCKLLLTARDCNVLLNMSLC 173 (183)
Q Consensus 103 ~~~~~~-------~~~~~~~~~~~~~~~~~~~~llvlD~~~~~~~~~~l~--~~~~~~~~~~~iiitsr~~~~~~~~~~~ 173 (183)
+..... .+..+..+..+..+...++.+|||||..++.+++.+. .......+|+ ||++|||+.++..+.+.
T Consensus 427 ~F~~~~~~~~v~~LSGGEk~Rl~La~ll~~~pNvLiLDEPTNhLDi~s~~aLe~aL~~f~Gt-vl~VSHDr~Fl~~va~~ 505 (530)
T COG0488 427 GFTGEDQEKPVGVLSGGEKARLLLAKLLLQPPNLLLLDEPTNHLDIESLEALEEALLDFEGT-VLLVSHDRYFLDRVATR 505 (530)
T ss_pred CCChHHHhCchhhcCHhHHHHHHHHHHhccCCCEEEEcCCCccCCHHHHHHHHHHHHhCCCe-EEEEeCCHHHHHhhcce
Confidence 433222 2334445555666666899999999999887766662 2233456786 99999999999988765
Q ss_pred Ccch
Q 035585 174 RSEE 177 (183)
Q Consensus 174 ~~~~ 177 (183)
....
T Consensus 506 i~~~ 509 (530)
T COG0488 506 IWLV 509 (530)
T ss_pred EEEE
Confidence 5433
No 27
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=98.96 E-value=2.5e-09 Score=78.99 Aligned_cols=110 Identities=17% Similarity=0.112 Sum_probs=84.6
Q ss_pred hhhhhcCCCcccccchHHHHHHHHHHhccCCccEEEEEeCCCCcHHHHHHHHHhHHhhhhcccceEEEEecCCcCHHHHH
Q 035585 16 EVWLKSNKGYEAFKSRLSTLKSIQDALTDVNVNIVGVYGMGGIGKTTLVKEFARQASEEKLFDQVVFSEVSQTPDIKKIH 95 (183)
Q Consensus 16 ~~~~~~~~~~~~~~gR~~~l~~l~~~l~~~~~~~v~i~G~~G~GKTtL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 95 (183)
+.....|....+.+|-++.++.+.........+.+.+.||||+||||-+..+++.+-...+.+.++-++++....+.-+.
T Consensus 17 wVeKYrP~~l~dIVGNe~tv~rl~via~~gnmP~liisGpPG~GKTTsi~~LAr~LLG~~~ke~vLELNASdeRGIDvVR 96 (333)
T KOG0991|consen 17 WVEKYRPSVLQDIVGNEDTVERLSVIAKEGNMPNLIISGPPGTGKTTSILCLARELLGDSYKEAVLELNASDERGIDVVR 96 (333)
T ss_pred HHHhhCchHHHHhhCCHHHHHHHHHHHHcCCCCceEeeCCCCCchhhHHHHHHHHHhChhhhhHhhhccCccccccHHHH
Confidence 56666788888999999999999998888889999999999999999999999888765556677788888776665444
Q ss_pred HHHHHHhCCCchhHHHHHHHHHHHHHHhcCCeEEEEEeCCCCcc
Q 035585 96 GEIAEKLGLEFSEEAESRRASRLYERLKKEKMILVILDNIWKYL 139 (183)
Q Consensus 96 ~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~llvlD~~~~~~ 139 (183)
..|- .+.+-.-.+..++.-++|+||+|++.
T Consensus 97 n~IK--------------~FAQ~kv~lp~grhKIiILDEADSMT 126 (333)
T KOG0991|consen 97 NKIK--------------MFAQKKVTLPPGRHKIIILDEADSMT 126 (333)
T ss_pred HHHH--------------HHHHhhccCCCCceeEEEeeccchhh
Confidence 3331 12222223334788899999999884
No 28
>PRK14960 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.94 E-value=7.3e-09 Score=87.21 Aligned_cols=126 Identities=12% Similarity=0.196 Sum_probs=81.1
Q ss_pred hhcCCCcccccchHHHHHHHHHHhccCC-ccEEEEEeCCCCcHHHHHHHHHhHHhhhhcc-------------------c
Q 035585 19 LKSNKGYEAFKSRLSTLKSIQDALTDVN-VNIVGVYGMGGIGKTTLVKEFARQASEEKLF-------------------D 78 (183)
Q Consensus 19 ~~~~~~~~~~~gR~~~l~~l~~~l~~~~-~~~v~i~G~~G~GKTtL~~~~~~~~~~~~~~-------------------~ 78 (183)
...|.....++|.+.....|.+++.+.+ .+.++++|++|+||||+|+.+++.+...... .
T Consensus 8 KyRPktFddVIGQe~vv~~L~~aI~~grl~HAyLF~GPpGvGKTTlAriLAK~LnC~~~~~~~pCg~C~sC~~I~~g~hp 87 (702)
T PRK14960 8 KYRPRNFNELVGQNHVSRALSSALERGRLHHAYLFTGTRGVGKTTIARILAKCLNCETGVTSTPCEVCATCKAVNEGRFI 87 (702)
T ss_pred HhCCCCHHHhcCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhCCCcCCCCCCCccCHHHHHHhcCCCC
Confidence 3456777889999999999999998655 4678999999999999999999887532100 0
Q ss_pred ceEEEEecCCcCHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHH----hcCCeEEEEEeCCCCcc--cccccCcCCCCCC
Q 035585 79 QVVFSEVSQTPDIKKIHGEIAEKLGLEFSEEAESRRASRLYERL----KKEKMILVILDNIWKYL--DLETVGIPFGDDH 152 (183)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~----~~~~~~llvlD~~~~~~--~~~~l~~~~~~~~ 152 (183)
.++.++..+... .+.++.+.... ..++..++||||+|.+. ..+.++..+....
T Consensus 88 DviEIDAAs~~~---------------------VddIReli~~~~y~P~~gk~KV~IIDEVh~LS~~A~NALLKtLEEPP 146 (702)
T PRK14960 88 DLIEIDAASRTK---------------------VEDTRELLDNVPYAPTQGRFKVYLIDEVHMLSTHSFNALLKTLEEPP 146 (702)
T ss_pred ceEEecccccCC---------------------HHHHHHHHHHHhhhhhcCCcEEEEEechHhcCHHHHHHHHHHHhcCC
Confidence 111111111111 11112222211 12567799999999774 4556666665555
Q ss_pred CCcEEEEEecChH
Q 035585 153 RGCKLLLTARDCN 165 (183)
Q Consensus 153 ~~~~iiitsr~~~ 165 (183)
.++.+|+++.+..
T Consensus 147 ~~v~FILaTtd~~ 159 (702)
T PRK14960 147 EHVKFLFATTDPQ 159 (702)
T ss_pred CCcEEEEEECChH
Confidence 6778888887654
No 29
>PRK13342 recombination factor protein RarA; Reviewed
Probab=98.94 E-value=5.7e-09 Score=84.85 Aligned_cols=53 Identities=19% Similarity=0.256 Sum_probs=44.0
Q ss_pred cCCCcccccchHHHHHH---HHHHhccCCccEEEEEeCCCCcHHHHHHHHHhHHhh
Q 035585 21 SNKGYEAFKSRLSTLKS---IQDALTDVNVNIVGVYGMGGIGKTTLVKEFARQASE 73 (183)
Q Consensus 21 ~~~~~~~~~gR~~~l~~---l~~~l~~~~~~~v~i~G~~G~GKTtL~~~~~~~~~~ 73 (183)
.|.....|+|++..+.. +..++.+...+.++|+|++|+||||+|+.+++....
T Consensus 7 RP~~l~d~vGq~~~v~~~~~L~~~i~~~~~~~ilL~GppGtGKTtLA~~ia~~~~~ 62 (413)
T PRK13342 7 RPKTLDEVVGQEHLLGPGKPLRRMIEAGRLSSMILWGPPGTGKTTLARIIAGATDA 62 (413)
T ss_pred CCCCHHHhcCcHHHhCcchHHHHHHHcCCCceEEEECCCCCCHHHHHHHHHHHhCC
Confidence 45566779999988766 888887777788999999999999999999887543
No 30
>KOG0989 consensus Replication factor C, subunit RFC4 [Replication, recombination and repair]
Probab=98.94 E-value=2.7e-09 Score=81.46 Aligned_cols=137 Identities=20% Similarity=0.203 Sum_probs=93.6
Q ss_pred hhhhhcCCCcccccchHHHHHHHHHHhccCCccEEEEEeCCCCcHHHHHHHHHhHHhhhhcccc-eEEEEecCCcCHHHH
Q 035585 16 EVWLKSNKGYEAFKSRLSTLKSIQDALTDVNVNIVGVYGMGGIGKTTLVKEFARQASEEKLFDQ-VVFSEVSQTPDIKKI 94 (183)
Q Consensus 16 ~~~~~~~~~~~~~~gR~~~l~~l~~~l~~~~~~~v~i~G~~G~GKTtL~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~ 94 (183)
+....-|+....+.|-+..+.-|.+.+.+...+..+.|||+|+|||+.+..++..+...+.+.+ +.-.|++......-.
T Consensus 26 wteKYrPkt~de~~gQe~vV~~L~~a~~~~~lp~~LFyGPpGTGKTStalafar~L~~~~~~~~rvl~lnaSderGisvv 105 (346)
T KOG0989|consen 26 WTEKYRPKTFDELAGQEHVVQVLKNALLRRILPHYLFYGPPGTGKTSTALAFARALNCEQLFPCRVLELNASDERGISVV 105 (346)
T ss_pred hHHHhCCCcHHhhcchHHHHHHHHHHHhhcCCceEEeeCCCCCcHhHHHHHHHHHhcCccccccchhhhcccccccccch
Confidence 4555678888999999999999999988766789999999999999999999998876544443 444455443322210
Q ss_pred HHHHHHHhCCCchhHHHHHHHHHHHHHH------hcCCeEEEEEeCCCCcc--cccccCcCCCCCCCCcEEEEEecChHH
Q 035585 95 HGEIAEKLGLEFSEEAESRRASRLYERL------KKEKMILVILDNIWKYL--DLETVGIPFGDDHRGCKLLLTARDCNV 166 (183)
Q Consensus 95 ~~~i~~~l~~~~~~~~~~~~~~~~~~~~------~~~~~~llvlD~~~~~~--~~~~l~~~~~~~~~~~~iiitsr~~~~ 166 (183)
..++ ..+..+.... ....-.++||||+|.+. .|..+...+.+....+++|+++..-+.
T Consensus 106 r~Ki--------------k~fakl~~~~~~~~~~~~~~fKiiIlDEcdsmtsdaq~aLrr~mE~~s~~trFiLIcnylsr 171 (346)
T KOG0989|consen 106 REKI--------------KNFAKLTVLLKRSDGYPCPPFKIIILDECDSMTSDAQAALRRTMEDFSRTTRFILICNYLSR 171 (346)
T ss_pred hhhh--------------cCHHHHhhccccccCCCCCcceEEEEechhhhhHHHHHHHHHHHhccccceEEEEEcCChhh
Confidence 0000 0011111111 01233799999999884 588888888888888888887765543
No 31
>cd01128 rho_factor Transcription termination factor rho is a bacterial ATP-dependent RNA/DNA helicase. It is a homohexamer. Each monomer consists of an N-terminal domain of the OB fold, which is responsible for binding to cysteine rich nucleotides. This alignment is of the C-terminal ATP binding domain.
Probab=98.93 E-value=7.2e-09 Score=78.52 Aligned_cols=90 Identities=13% Similarity=0.175 Sum_probs=61.9
Q ss_pred CccEEEEEeCCCCcHHHHHHHHHhHHhhhhcccceEEEEecCC--cCHHHHHHHH-----HHHhCCCchhHHHHH---H-
Q 035585 46 NVNIVGVYGMGGIGKTTLVKEFARQASEEKLFDQVVFSEVSQT--PDIKKIHGEI-----AEKLGLEFSEEAESR---R- 114 (183)
Q Consensus 46 ~~~~v~i~G~~G~GKTtL~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~i-----~~~l~~~~~~~~~~~---~- 114 (183)
+.+.++|.|++|+|||||++.+++..... .|+..+|+..... .+..++...+ +..+.. +...... .
T Consensus 15 ~Gqr~~I~G~~G~GKTTLlr~I~n~l~~~-~fdv~~~v~vI~er~~ev~el~~~I~~~~v~~~~~~--~~~~~~~~~~~~ 91 (249)
T cd01128 15 KGQRGLIVAPPKAGKTTLLQSIANAITKN-HPEVYLIVLLIDERPEEVTDMQRSVKGEVIASTFDE--PPERHVQVAEMV 91 (249)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhccccc-cCCeEEEEEEccCCCccHHHHHHHhccEEEEecCCC--CHHHHHHHHHHH
Confidence 45789999999999999999999988765 6777778876555 6788888888 443343 1211111 1
Q ss_pred HHHHHHHHhcCCeEEEEEeCCCCc
Q 035585 115 ASRLYERLKKEKMILVILDNIWKY 138 (183)
Q Consensus 115 ~~~~~~~~~~~~~~llvlD~~~~~ 138 (183)
..........+++.+|++||++..
T Consensus 92 ~~~a~~~~~~G~~vll~iDei~r~ 115 (249)
T cd01128 92 LEKAKRLVEHGKDVVILLDSITRL 115 (249)
T ss_pred HHHHHHHHHCCCCEEEEEECHHHh
Confidence 122222223578999999998754
No 32
>PRK14949 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.91 E-value=1.1e-08 Score=88.48 Aligned_cols=130 Identities=16% Similarity=0.243 Sum_probs=80.7
Q ss_pred hhcCCCcccccchHHHHHHHHHHhccCCccE-EEEEeCCCCcHHHHHHHHHhHHhhhhcccc------------------
Q 035585 19 LKSNKGYEAFKSRLSTLKSIQDALTDVNVNI-VGVYGMGGIGKTTLVKEFARQASEEKLFDQ------------------ 79 (183)
Q Consensus 19 ~~~~~~~~~~~gR~~~l~~l~~~l~~~~~~~-v~i~G~~G~GKTtL~~~~~~~~~~~~~~~~------------------ 79 (183)
...|.....++|.+..+..|.+++...+.+. ++++|++|+||||+|+.+++.+........
T Consensus 9 KyRP~tFddIIGQe~Iv~~LknaI~~~rl~HAyLFtGPpGtGKTTLARiLAk~Lnce~~~~~~pCg~C~sC~~i~~g~~~ 88 (944)
T PRK14949 9 KWRPATFEQMVGQSHVLHALTNALTQQRLHHAYLFTGTRGVGKTSLARLFAKGLNCEQGVTATPCGVCSSCVEIAQGRFV 88 (944)
T ss_pred HhCCCCHHHhcCcHHHHHHHHHHHHhCCCCeEEEEECCCCCCHHHHHHHHHHhccCccCCCCCCCCCchHHHHHhcCCCc
Confidence 3456777789999999999999988655554 589999999999999999988754311100
Q ss_pred -eEEEEecCCcCHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHHhcCCeEEEEEeCCCCcc--cccccCcCCCCCCCCcE
Q 035585 80 -VVFSEVSQTPDIKKIHGEIAEKLGLEFSEEAESRRASRLYERLKKEKMILVILDNIWKYL--DLETVGIPFGDDHRGCK 156 (183)
Q Consensus 80 -~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~llvlD~~~~~~--~~~~l~~~~~~~~~~~~ 156 (183)
+++++........ ..+.+. ..+...-..++..++||||++.+. ..+.|+..+......++
T Consensus 89 DviEidAas~~kVD-dIReLi----------------e~v~~~P~~gk~KViIIDEAh~LT~eAqNALLKtLEEPP~~vr 151 (944)
T PRK14949 89 DLIEVDAASRTKVD-DTRELL----------------DNVQYRPSRGRFKVYLIDEVHMLSRSSFNALLKTLEEPPEHVK 151 (944)
T ss_pred eEEEeccccccCHH-HHHHHH----------------HHHHhhhhcCCcEEEEEechHhcCHHHHHHHHHHHhccCCCeE
Confidence 1111111000010 011111 111111123677899999999773 56666666666666777
Q ss_pred EEEEecChH
Q 035585 157 LLLTARDCN 165 (183)
Q Consensus 157 iiitsr~~~ 165 (183)
+|++|.+..
T Consensus 152 FILaTTe~~ 160 (944)
T PRK14949 152 FLLATTDPQ 160 (944)
T ss_pred EEEECCCch
Confidence 777766544
No 33
>KOG2227 consensus Pre-initiation complex, subunit CDC6, AAA+ superfamily ATPase [Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=98.91 E-value=3.5e-08 Score=79.29 Aligned_cols=140 Identities=16% Similarity=0.193 Sum_probs=95.5
Q ss_pred cCCCcccccchHHHHHHHHHHhc----cCCccEEEEEeCCCCcHHHHHHHHHhHHhhhhcccceEEEEecCCcCHHHHHH
Q 035585 21 SNKGYEAFKSRLSTLKSIQDALT----DVNVNIVGVYGMGGIGKTTLVKEFARQASEEKLFDQVVFSEVSQTPDIKKIHG 96 (183)
Q Consensus 21 ~~~~~~~~~gR~~~l~~l~~~l~----~~~~~~v~i~G~~G~GKTtL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 (183)
....+..+.||+.+++.+.+++. ....+.+-|.|-+|.|||.++..++........-..++|+++.+-.....++.
T Consensus 145 ~t~~p~~l~gRe~e~~~v~~F~~~hle~~t~gSlYVsG~PGtgkt~~l~rvl~~~~~~~~~~~~v~inc~sl~~~~aiF~ 224 (529)
T KOG2227|consen 145 NTAPPGTLKGRELEMDIVREFFSLHLELNTSGSLYVSGQPGTGKTALLSRVLDSLSKSSKSPVTVYINCTSLTEASAIFK 224 (529)
T ss_pred hcCCCCCccchHHHHHHHHHHHHhhhhcccCcceEeeCCCCcchHHHHHHHHHhhhhhcccceeEEEeeccccchHHHHH
Confidence 44567789999999999999986 44567889999999999999999988887652233578999998777777888
Q ss_pred HHHHHh--CCCchhHHHHHHHHHHHHHHhcC-CeEEEEEeCCCCcc--cccccCcCCCC-CCCCcEEEEEe
Q 035585 97 EIAEKL--GLEFSEEAESRRASRLYERLKKE-KMILVILDNIWKYL--DLETVGIPFGD-DHRGCKLLLTA 161 (183)
Q Consensus 97 ~i~~~l--~~~~~~~~~~~~~~~~~~~~~~~-~~~llvlD~~~~~~--~~~~l~~~~~~-~~~~~~iiits 161 (183)
.|+..+ ....++.. ....+.+.....+. ..+++|+||+|.+. ....+...+.+ ..+++++|+..
T Consensus 225 kI~~~~~q~~~s~~~~-~~~~~~~~~h~~q~k~~~llVlDEmD~L~tr~~~vLy~lFewp~lp~sr~iLiG 294 (529)
T KOG2227|consen 225 KIFSSLLQDLVSPGTG-MQHLEKFEKHTKQSKFMLLLVLDEMDHLITRSQTVLYTLFEWPKLPNSRIILIG 294 (529)
T ss_pred HHHHHHHHHhcCCchh-HHHHHHHHHHHhcccceEEEEechhhHHhhcccceeeeehhcccCCcceeeeee
Confidence 888777 22222222 22334444444433 47999999999773 23333333333 23456665554
No 34
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=98.91 E-value=1.7e-08 Score=85.50 Aligned_cols=56 Identities=21% Similarity=0.281 Sum_probs=47.1
Q ss_pred hhhcCCCcccccchHHHHHHHHHHhccCC-ccEEEEEeCCCCcHHHHHHHHHhHHhh
Q 035585 18 WLKSNKGYEAFKSRLSTLKSIQDALTDVN-VNIVGVYGMGGIGKTTLVKEFARQASE 73 (183)
Q Consensus 18 ~~~~~~~~~~~~gR~~~l~~l~~~l~~~~-~~~v~i~G~~G~GKTtL~~~~~~~~~~ 73 (183)
....|.....++|.+..+..|.+++.+.+ .+.++++|++|+||||+|+.++..+..
T Consensus 8 rKYRP~tFddIIGQe~vv~~L~~ai~~~rl~Ha~Lf~GP~GvGKTTlAriLAk~LnC 64 (709)
T PRK08691 8 RKWRPKTFADLVGQEHVVKALQNALDEGRLHHAYLLTGTRGVGKTTIARILAKSLNC 64 (709)
T ss_pred HHhCCCCHHHHcCcHHHHHHHHHHHHcCCCCeEEEEECCCCCcHHHHHHHHHHHhcc
Confidence 34567778889999999999999988655 457899999999999999999887653
No 35
>PRK14961 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.91 E-value=2.3e-08 Score=79.96 Aligned_cols=144 Identities=12% Similarity=0.176 Sum_probs=79.2
Q ss_pred hhcCCCcccccchHHHHHHHHHHhccCC-ccEEEEEeCCCCcHHHHHHHHHhHHhhhhcccceEEEEecCCcCHHHHHHH
Q 035585 19 LKSNKGYEAFKSRLSTLKSIQDALTDVN-VNIVGVYGMGGIGKTTLVKEFARQASEEKLFDQVVFSEVSQTPDIKKIHGE 97 (183)
Q Consensus 19 ~~~~~~~~~~~gR~~~l~~l~~~l~~~~-~~~v~i~G~~G~GKTtL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 97 (183)
...|.....++|.+...+.+.+.+...+ ++.++++||+|+||||+|+.++..+........- .+.......++...
T Consensus 9 kyrP~~~~~iiGq~~~~~~l~~~~~~~~~~h~~L~~Gp~G~GKTtla~~la~~l~c~~~~~~~---pc~~c~~c~~~~~~ 85 (363)
T PRK14961 9 KWRPQYFRDIIGQKHIVTAISNGLSLGRIHHAWLLSGTRGVGKTTIARLLAKSLNCQNGITSN---PCRKCIICKEIEKG 85 (363)
T ss_pred HhCCCchhhccChHHHHHHHHHHHHcCCCCeEEEEecCCCCCHHHHHHHHHHHhcCCCCCCCC---CCCCCHHHHHHhcC
Confidence 3455677788999999999999887544 4567999999999999999999887532110000 00000000000000
Q ss_pred HHHHhC-CCchhHHHHHHHHHHHHHHh----cCCeEEEEEeCCCCcc--cccccCcCCCCCCCCcEEEEEecChH
Q 035585 98 IAEKLG-LEFSEEAESRRASRLYERLK----KEKMILVILDNIWKYL--DLETVGIPFGDDHRGCKLLLTARDCN 165 (183)
Q Consensus 98 i~~~l~-~~~~~~~~~~~~~~~~~~~~----~~~~~llvlD~~~~~~--~~~~l~~~~~~~~~~~~iiitsr~~~ 165 (183)
..-.+. .........+.+..+...+. ..+..++||||++.+. .++.++..+......+.+|+++.+..
T Consensus 86 ~~~d~~~~~~~~~~~v~~ir~i~~~~~~~p~~~~~kviIIDEa~~l~~~a~naLLk~lEe~~~~~~fIl~t~~~~ 160 (363)
T PRK14961 86 LCLDLIEIDAASRTKVEEMREILDNIYYSPSKSRFKVYLIDEVHMLSRHSFNALLKTLEEPPQHIKFILATTDVE 160 (363)
T ss_pred CCCceEEecccccCCHHHHHHHHHHHhcCcccCCceEEEEEChhhcCHHHHHHHHHHHhcCCCCeEEEEEcCChH
Confidence 000000 00000001111223332221 2456799999999775 35556666665556777777776543
No 36
>PRK04195 replication factor C large subunit; Provisional
Probab=98.90 E-value=7.9e-09 Score=85.59 Aligned_cols=103 Identities=17% Similarity=0.172 Sum_probs=66.5
Q ss_pred hhhhcCCCcccccchHHHHHHHHHHhcc----CCccEEEEEeCCCCcHHHHHHHHHhHHhhhhcccceEEEEecCCcCHH
Q 035585 17 VWLKSNKGYEAFKSRLSTLKSIQDALTD----VNVNIVGVYGMGGIGKTTLVKEFARQASEEKLFDQVVFSEVSQTPDIK 92 (183)
Q Consensus 17 ~~~~~~~~~~~~~gR~~~l~~l~~~l~~----~~~~~v~i~G~~G~GKTtL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 92 (183)
.....|.....++|++...+.|.+++.+ ...+.++|+|++|+||||+|+.+++.+.- .++.++++......
T Consensus 5 ~eKyrP~~l~dlvg~~~~~~~l~~~l~~~~~g~~~~~lLL~GppG~GKTtla~ala~el~~-----~~ielnasd~r~~~ 79 (482)
T PRK04195 5 VEKYRPKTLSDVVGNEKAKEQLREWIESWLKGKPKKALLLYGPPGVGKTSLAHALANDYGW-----EVIELNASDQRTAD 79 (482)
T ss_pred hhhcCCCCHHHhcCCHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCCHHHHHHHHHHHcCC-----CEEEEcccccccHH
Confidence 3445677778899999999999998862 23688999999999999999999987632 24445554332222
Q ss_pred HHHHHHHHHhCCCchhHHHHHHHHHHHHHHhcCCeEEEEEeCCCCcc
Q 035585 93 KIHGEIAEKLGLEFSEEAESRRASRLYERLKKEKMILVILDNIWKYL 139 (183)
Q Consensus 93 ~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~llvlD~~~~~~ 139 (183)
....++...... ..+...++.+|||||+|.+.
T Consensus 80 -~i~~~i~~~~~~--------------~sl~~~~~kvIiIDEaD~L~ 111 (482)
T PRK04195 80 -VIERVAGEAATS--------------GSLFGARRKLILLDEVDGIH 111 (482)
T ss_pred -HHHHHHHHhhcc--------------CcccCCCCeEEEEecCcccc
Confidence 222222111100 01111367899999998763
No 37
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.90 E-value=1.4e-08 Score=84.28 Aligned_cols=127 Identities=13% Similarity=0.246 Sum_probs=81.9
Q ss_pred hhhhcCCCcccccchHHHHHHHHHHhccCCcc-EEEEEeCCCCcHHHHHHHHHhHHhhhhccc-----------------
Q 035585 17 VWLKSNKGYEAFKSRLSTLKSIQDALTDVNVN-IVGVYGMGGIGKTTLVKEFARQASEEKLFD----------------- 78 (183)
Q Consensus 17 ~~~~~~~~~~~~~gR~~~l~~l~~~l~~~~~~-~v~i~G~~G~GKTtL~~~~~~~~~~~~~~~----------------- 78 (183)
.....|.....++|-+..+..|.+++.+.+.+ .++++|++|+||||+|+.++..+.......
T Consensus 7 ~~kyRP~~f~divGq~~v~~~L~~~~~~~~l~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pCg~C~~C~~i~~g~ 86 (509)
T PRK14958 7 ARKWRPRCFQEVIGQAPVVRALSNALDQQYLHHAYLFTGTRGVGKTTISRILAKCLNCEKGVSANPCNDCENCREIDEGR 86 (509)
T ss_pred HHHHCCCCHHHhcCCHHHHHHHHHHHHhCCCCeeEEEECCCCCCHHHHHHHHHHHhcCCCCCCcccCCCCHHHHHHhcCC
Confidence 34456777888999999999999999865554 579999999999999999998775421110
Q ss_pred --ceEEEEecCCcCHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHH----hcCCeEEEEEeCCCCcc--cccccCcCCCC
Q 035585 79 --QVVFSEVSQTPDIKKIHGEIAEKLGLEFSEEAESRRASRLYERL----KKEKMILVILDNIWKYL--DLETVGIPFGD 150 (183)
Q Consensus 79 --~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~----~~~~~~llvlD~~~~~~--~~~~l~~~~~~ 150 (183)
.++.++..+..... .++.+...+ ..++..++||||+|.+. ..+.++..+..
T Consensus 87 ~~d~~eidaas~~~v~---------------------~iR~l~~~~~~~p~~~~~kV~iIDE~~~ls~~a~naLLk~LEe 145 (509)
T PRK14958 87 FPDLFEVDAASRTKVE---------------------DTRELLDNIPYAPTKGRFKVYLIDEVHMLSGHSFNALLKTLEE 145 (509)
T ss_pred CceEEEEcccccCCHH---------------------HHHHHHHHHhhccccCCcEEEEEEChHhcCHHHHHHHHHHHhc
Confidence 12222222111111 112222221 12566789999999763 46666666666
Q ss_pred CCCCcEEEEEecCh
Q 035585 151 DHRGCKLLLTARDC 164 (183)
Q Consensus 151 ~~~~~~iiitsr~~ 164 (183)
....+.+|++|.+.
T Consensus 146 pp~~~~fIlattd~ 159 (509)
T PRK14958 146 PPSHVKFILATTDH 159 (509)
T ss_pred cCCCeEEEEEECCh
Confidence 66678777777654
No 38
>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]
Probab=98.90 E-value=5.9e-09 Score=86.60 Aligned_cols=60 Identities=23% Similarity=0.207 Sum_probs=43.9
Q ss_pred HHHHHHhcCCeEEEEEeCCCCcccccccCc--CCCCCCCCcEEEEEecChHHHhhcCCCCcch
Q 035585 117 RLYERLKKEKMILVILDNIWKYLDLETVGI--PFGDDHRGCKLLLTARDCNVLLNMSLCRSEE 177 (183)
Q Consensus 117 ~~~~~~~~~~~~llvlD~~~~~~~~~~l~~--~~~~~~~~~~iiitsr~~~~~~~~~~~~~~~ 177 (183)
..+.++.-.++-+|+|||..++.+++.+.+ .+....+| .+|++|||+.++..+.++....
T Consensus 162 v~LA~aL~~~pDlLLLDEPTNHLD~~~i~WLe~~L~~~~g-tviiVSHDR~FLd~V~t~I~~l 223 (530)
T COG0488 162 VALARALLEEPDLLLLDEPTNHLDLESIEWLEDYLKRYPG-TVIVVSHDRYFLDNVATHILEL 223 (530)
T ss_pred HHHHHHHhcCCCEEEEcCCCcccCHHHHHHHHHHHHhCCC-cEEEEeCCHHHHHHHhhheEEe
Confidence 333333347888999999999887666522 23345667 6999999999999988876654
No 39
>PRK14957 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.89 E-value=2.7e-08 Score=82.90 Aligned_cols=129 Identities=14% Similarity=0.188 Sum_probs=78.9
Q ss_pred hhcCCCcccccchHHHHHHHHHHhccCCc-cEEEEEeCCCCcHHHHHHHHHhHHhhhhc-------------------cc
Q 035585 19 LKSNKGYEAFKSRLSTLKSIQDALTDVNV-NIVGVYGMGGIGKTTLVKEFARQASEEKL-------------------FD 78 (183)
Q Consensus 19 ~~~~~~~~~~~gR~~~l~~l~~~l~~~~~-~~v~i~G~~G~GKTtL~~~~~~~~~~~~~-------------------~~ 78 (183)
...|.....++|.+..+..|.+.+...+. +.++++|++|+||||+|+.++..+..... +.
T Consensus 9 KyRP~~f~diiGq~~~v~~L~~~i~~~rl~ha~Lf~Gp~GvGKTTlAr~lAk~L~c~~~~~~~pCg~C~sC~~i~~~~~~ 88 (546)
T PRK14957 9 KYRPQSFAEVAGQQHALNSLVHALETQKVHHAYLFTGTRGVGKTTLGRLLAKCLNCKTGVTAEPCNKCENCVAINNNSFI 88 (546)
T ss_pred HHCcCcHHHhcCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCcccHHHHHHhcCCCC
Confidence 34566777889999999999998876544 55889999999999999999987753210 00
Q ss_pred ceEEEEecCCcCHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHHhcCCeEEEEEeCCCCcc--cccccCcCCCCCCCCcE
Q 035585 79 QVVFSEVSQTPDIKKIHGEIAEKLGLEFSEEAESRRASRLYERLKKEKMILVILDNIWKYL--DLETVGIPFGDDHRGCK 156 (183)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~llvlD~~~~~~--~~~~l~~~~~~~~~~~~ 156 (183)
.+++++........ ........+...-..+++.++||||++.+. ..+.++..+......+.
T Consensus 89 dlieidaas~~gvd-----------------~ir~ii~~~~~~p~~g~~kViIIDEa~~ls~~a~naLLK~LEepp~~v~ 151 (546)
T PRK14957 89 DLIEIDAASRTGVE-----------------ETKEILDNIQYMPSQGRYKVYLIDEVHMLSKQSFNALLKTLEEPPEYVK 151 (546)
T ss_pred ceEEeecccccCHH-----------------HHHHHHHHHHhhhhcCCcEEEEEechhhccHHHHHHHHHHHhcCCCCce
Confidence 11111111111111 001111111111123677899999999764 46666666666556777
Q ss_pred EEEEecCh
Q 035585 157 LLLTARDC 164 (183)
Q Consensus 157 iiitsr~~ 164 (183)
+|++|.+.
T Consensus 152 fIL~Ttd~ 159 (546)
T PRK14957 152 FILATTDY 159 (546)
T ss_pred EEEEECCh
Confidence 77666554
No 40
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.88 E-value=1.8e-08 Score=82.32 Aligned_cols=144 Identities=13% Similarity=0.173 Sum_probs=81.3
Q ss_pred hhhhcCCCcccccchHHHHHHHHHHhccCCc-cEEEEEeCCCCcHHHHHHHHHhHHhhhhcccceEEEEecCCcCHHHHH
Q 035585 17 VWLKSNKGYEAFKSRLSTLKSIQDALTDVNV-NIVGVYGMGGIGKTTLVKEFARQASEEKLFDQVVFSEVSQTPDIKKIH 95 (183)
Q Consensus 17 ~~~~~~~~~~~~~gR~~~l~~l~~~l~~~~~-~~v~i~G~~G~GKTtL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 95 (183)
.....|.....++|.+..+..|.+++.+.+. +.++++|++|+||||+|+.++..+........ ..|........+.
T Consensus 9 ~~KyRP~~f~dvVGQe~iv~~L~~~i~~~ri~ha~Lf~GP~GtGKTTlAriLAk~Lnce~~~~~---~pCg~C~sC~~i~ 85 (484)
T PRK14956 9 SRKYRPQFFRDVIHQDLAIGALQNALKSGKIGHAYIFFGPRGVGKTTIARILAKRLNCENPIGN---EPCNECTSCLEIT 85 (484)
T ss_pred HHHhCCCCHHHHhChHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHhcCcccccCc---cccCCCcHHHHHH
Confidence 3345667778889999999999998886664 46899999999999999999987754311100 0011111111111
Q ss_pred HHHHHHhCC-CchhHHHHHHHHHHHHHH----hcCCeEEEEEeCCCCcc--cccccCcCCCCCCCCcEEEEEecC
Q 035585 96 GEIAEKLGL-EFSEEAESRRASRLYERL----KKEKMILVILDNIWKYL--DLETVGIPFGDDHRGCKLLLTARD 163 (183)
Q Consensus 96 ~~i~~~l~~-~~~~~~~~~~~~~~~~~~----~~~~~~llvlD~~~~~~--~~~~l~~~~~~~~~~~~iiitsr~ 163 (183)
......+.. ........+.+..+...+ ..++..++||||+|.+. .++.++..+......+.+|++|.+
T Consensus 86 ~g~~~dviEIdaas~~gVd~IReL~e~l~~~p~~g~~KV~IIDEah~Ls~~A~NALLKtLEEPp~~viFILaTte 160 (484)
T PRK14956 86 KGISSDVLEIDAASNRGIENIRELRDNVKFAPMGGKYKVYIIDEVHMLTDQSFNALLKTLEEPPAHIVFILATTE 160 (484)
T ss_pred ccCCccceeechhhcccHHHHHHHHHHHHhhhhcCCCEEEEEechhhcCHHHHHHHHHHhhcCCCceEEEeecCC
Confidence 111000000 000000011122222222 23567899999999774 466666666555556666666654
No 41
>KOG2028 consensus ATPase related to the helicase subunit of the Holliday junction resolvase [Replication, recombination and repair]
Probab=98.87 E-value=1.7e-08 Score=79.09 Aligned_cols=96 Identities=18% Similarity=0.300 Sum_probs=62.3
Q ss_pred CcccccchHHHH---HHHHHHhccCCccEEEEEeCCCCcHHHHHHHHHhHHhhhhcccceEEEEecCCcCHHHHHHHHHH
Q 035585 24 GYEAFKSRLSTL---KSIQDALTDVNVNIVGVYGMGGIGKTTLVKEFARQASEEKLFDQVVFSEVSQTPDIKKIHGEIAE 100 (183)
Q Consensus 24 ~~~~~~gR~~~l---~~l~~~l~~~~~~~v~i~G~~G~GKTtL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 100 (183)
.-.+++|.+..+ .-|.++++.++.+.+.+|||+|+||||||+.+...-+.. ..+|+..+-......-.+.+++
T Consensus 136 tL~dyvGQ~hlv~q~gllrs~ieq~~ipSmIlWGppG~GKTtlArlia~tsk~~----SyrfvelSAt~a~t~dvR~ife 211 (554)
T KOG2028|consen 136 TLDDYVGQSHLVGQDGLLRSLIEQNRIPSMILWGPPGTGKTTLARLIASTSKKH----SYRFVELSATNAKTNDVRDIFE 211 (554)
T ss_pred hHHHhcchhhhcCcchHHHHHHHcCCCCceEEecCCCCchHHHHHHHHhhcCCC----ceEEEEEeccccchHHHHHHHH
Confidence 334555655544 334556667888999999999999999999998875543 2567777655444433444432
Q ss_pred HhCCCchhHHHHHHHHHHHHHHhcCCeEEEEEeCCCCc
Q 035585 101 KLGLEFSEEAESRRASRLYERLKKEKMILVILDNIWKY 138 (183)
Q Consensus 101 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~llvlD~~~~~ 138 (183)
+ .+-...+ ..++.+|++||++.-
T Consensus 212 ~--------------aq~~~~l-~krkTilFiDEiHRF 234 (554)
T KOG2028|consen 212 Q--------------AQNEKSL-TKRKTILFIDEIHRF 234 (554)
T ss_pred H--------------HHHHHhh-hcceeEEEeHHhhhh
Confidence 2 1111122 378999999999854
No 42
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=98.87 E-value=9.8e-09 Score=70.02 Aligned_cols=91 Identities=22% Similarity=0.181 Sum_probs=52.5
Q ss_pred ccEEEEEeCCCCcHHHHHHHHHhHHhhhhcccceEEEEecCCcCHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHHhcCC
Q 035585 47 VNIVGVYGMGGIGKTTLVKEFARQASEEKLFDQVVFSEVSQTPDIKKIHGEIAEKLGLEFSEEAESRRASRLYERLKKEK 126 (183)
Q Consensus 47 ~~~v~i~G~~G~GKTtL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 126 (183)
.+.+.|+|++|+||||+++.++..+.... ..+++++.+........... ............................
T Consensus 2 ~~~~~l~G~~G~GKTtl~~~l~~~~~~~~--~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (148)
T smart00382 2 GEVILIVGPPGSGKTTLARALARELGPPG--GGVIYIDGEDILEEVLDQLL-LIIVGGKKASGSGELRLRLALALARKLK 78 (148)
T ss_pred CCEEEEECCCCCcHHHHHHHHHhccCCCC--CCEEEECCEEccccCHHHHH-hhhhhccCCCCCHHHHHHHHHHHHHhcC
Confidence 46789999999999999999999877652 34666655544322111111 0111111111122223334444444344
Q ss_pred eEEEEEeCCCCccc
Q 035585 127 MILVILDNIWKYLD 140 (183)
Q Consensus 127 ~~llvlD~~~~~~~ 140 (183)
..+|++||++....
T Consensus 79 ~~viiiDei~~~~~ 92 (148)
T smart00382 79 PDVLILDEITSLLD 92 (148)
T ss_pred CCEEEEECCcccCC
Confidence 69999999987743
No 43
>PHA02544 44 clamp loader, small subunit; Provisional
Probab=98.85 E-value=1.2e-08 Score=80.09 Aligned_cols=128 Identities=13% Similarity=0.116 Sum_probs=78.0
Q ss_pred hhhhhhcCCCcccccchHHHHHHHHHHhccCCc-cEEEEEeCCCCcHHHHHHHHHhHHhhhhcccceEEEEecCCcCHHH
Q 035585 15 EEVWLKSNKGYEAFKSRLSTLKSIQDALTDVNV-NIVGVYGMGGIGKTTLVKEFARQASEEKLFDQVVFSEVSQTPDIKK 93 (183)
Q Consensus 15 ~~~~~~~~~~~~~~~gR~~~l~~l~~~l~~~~~-~~v~i~G~~G~GKTtL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 93 (183)
.+.....|.....++|.+...+.+..++.+.+. +.++++|++|+|||++++.+++.... .+.++++.. .. ..
T Consensus 10 ~w~~kyrP~~~~~~~~~~~~~~~l~~~~~~~~~~~~lll~G~~G~GKT~la~~l~~~~~~-----~~~~i~~~~-~~-~~ 82 (316)
T PHA02544 10 MWEQKYRPSTIDECILPAADKETFKSIVKKGRIPNMLLHSPSPGTGKTTVAKALCNEVGA-----EVLFVNGSD-CR-ID 82 (316)
T ss_pred cceeccCCCcHHHhcCcHHHHHHHHHHHhcCCCCeEEEeeCcCCCCHHHHHHHHHHHhCc-----cceEeccCc-cc-HH
Confidence 344455677778889999999999998875544 56666999999999999999887532 234555544 11 11
Q ss_pred HHHHHHHHhCCCchhHHHHHHHHHHHHHH-hcCCeEEEEEeCCCCcc---cccccCcCCCCCCCCcEEEEEecChH
Q 035585 94 IHGEIAEKLGLEFSEEAESRRASRLYERL-KKEKMILVILDNIWKYL---DLETVGIPFGDDHRGCKLLLTARDCN 165 (183)
Q Consensus 94 ~~~~i~~~l~~~~~~~~~~~~~~~~~~~~-~~~~~~llvlD~~~~~~---~~~~l~~~~~~~~~~~~iiitsr~~~ 165 (183)
..+..+. ...... .....-+|||||++... ....+...+.....++.+|+|+....
T Consensus 83 ~i~~~l~----------------~~~~~~~~~~~~~vliiDe~d~l~~~~~~~~L~~~le~~~~~~~~Ilt~n~~~ 142 (316)
T PHA02544 83 FVRNRLT----------------RFASTVSLTGGGKVIIIDEFDRLGLADAQRHLRSFMEAYSKNCSFIITANNKN 142 (316)
T ss_pred HHHHHHH----------------HHHHhhcccCCCeEEEEECcccccCHHHHHHHHHHHHhcCCCceEEEEcCChh
Confidence 1111110 111111 01356789999998662 12223222334455778888887544
No 44
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=98.84 E-value=1.2e-08 Score=69.50 Aligned_cols=96 Identities=17% Similarity=0.205 Sum_probs=55.6
Q ss_pred EEEEeCCCCcHHHHHHHHHhHHhhhhcccceEEEEecCCcCHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHHhcCC-eE
Q 035585 50 VGVYGMGGIGKTTLVKEFARQASEEKLFDQVVFSEVSQTPDIKKIHGEIAEKLGLEFSEEAESRRASRLYERLKKEK-MI 128 (183)
Q Consensus 50 v~i~G~~G~GKTtL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~ 128 (183)
++|+|++|+|||++++.+++.+.. .++.++.+...+. ........+..++....... +.
T Consensus 1 ill~G~~G~GKT~l~~~la~~l~~-----~~~~i~~~~~~~~---------------~~~~~~~~i~~~~~~~~~~~~~~ 60 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLARALAQYLGF-----PFIEIDGSELISS---------------YAGDSEQKIRDFFKKAKKSAKPC 60 (132)
T ss_dssp EEEESSTTSSHHHHHHHHHHHTTS-----EEEEEETTHHHTS---------------STTHHHHHHHHHHHHHHHTSTSE
T ss_pred CEEECcCCCCeeHHHHHHHhhccc-----ccccccccccccc---------------cccccccccccccccccccccce
Confidence 589999999999999999998742 2334444322110 01122233344444444344 89
Q ss_pred EEEEeCCCCccc-------------ccccCcCCCCC---CCCcEEEEEecChH
Q 035585 129 LVILDNIWKYLD-------------LETVGIPFGDD---HRGCKLLLTARDCN 165 (183)
Q Consensus 129 llvlD~~~~~~~-------------~~~l~~~~~~~---~~~~~iiitsr~~~ 165 (183)
+|+|||+|.... ...+...+... .....+|.||.+.+
T Consensus 61 vl~iDe~d~l~~~~~~~~~~~~~~~~~~L~~~l~~~~~~~~~~~vI~ttn~~~ 113 (132)
T PF00004_consen 61 VLFIDEIDKLFPKSQPSSSSFEQRLLNQLLSLLDNPSSKNSRVIVIATTNSPD 113 (132)
T ss_dssp EEEEETGGGTSHHCSTSSSHHHHHHHHHHHHHHHTTTTTSSSEEEEEEESSGG
T ss_pred eeeeccchhcccccccccccccccccceeeecccccccccccceeEEeeCChh
Confidence 999999986532 22232222222 23467888887744
No 45
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.83 E-value=2.7e-08 Score=81.86 Aligned_cols=54 Identities=22% Similarity=0.218 Sum_probs=44.8
Q ss_pred hcCCCcccccchHHHHHHHHHHhccCCc-cEEEEEeCCCCcHHHHHHHHHhHHhh
Q 035585 20 KSNKGYEAFKSRLSTLKSIQDALTDVNV-NIVGVYGMGGIGKTTLVKEFARQASE 73 (183)
Q Consensus 20 ~~~~~~~~~~gR~~~l~~l~~~l~~~~~-~~v~i~G~~G~GKTtL~~~~~~~~~~ 73 (183)
..|.....++|.+.....|...+.+.+. +.++++||+|+||||+|+.++..+..
T Consensus 8 yRP~~~~divGq~~i~~~L~~~i~~~~l~~~~Lf~GPpGtGKTTlA~~lA~~l~~ 62 (472)
T PRK14962 8 YRPKTFSEVVGQDHVKKLIINALKKNSISHAYIFAGPRGTGKTTVARILAKSLNC 62 (472)
T ss_pred HCCCCHHHccCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhcc
Confidence 4566777889999988888888876655 45899999999999999999987754
No 46
>PRK07994 DNA polymerase III subunits gamma and tau; Validated
Probab=98.83 E-value=3.8e-08 Score=83.40 Aligned_cols=140 Identities=14% Similarity=0.218 Sum_probs=81.4
Q ss_pred hhcCCCcccccchHHHHHHHHHHhccCCcc-EEEEEeCCCCcHHHHHHHHHhHHhhhhcccceEEEEecCCcCHHHHHHH
Q 035585 19 LKSNKGYEAFKSRLSTLKSIQDALTDVNVN-IVGVYGMGGIGKTTLVKEFARQASEEKLFDQVVFSEVSQTPDIKKIHGE 97 (183)
Q Consensus 19 ~~~~~~~~~~~gR~~~l~~l~~~l~~~~~~-~v~i~G~~G~GKTtL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 97 (183)
...|.....++|.+..+..|.+.+.+++.+ .++++|+.|+||||+|+.++..+........ ..|... ..+..
T Consensus 9 KyRP~~f~divGQe~vv~~L~~~l~~~rl~hAyLf~Gp~GvGKTTlAr~lAk~L~c~~~~~~---~pCg~C----~~C~~ 81 (647)
T PRK07994 9 KWRPQTFAEVVGQEHVLTALANALDLGRLHHAYLFSGTRGVGKTTIARLLAKGLNCETGITA---TPCGEC----DNCRE 81 (647)
T ss_pred HhCCCCHHHhcCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHhhhhccCCCC---CCCCCC----HHHHH
Confidence 345677788999999999999988865554 4689999999999999999987765311000 000000 11111
Q ss_pred HHHH-----hCCCchhHHHHHHHHHHHHHH----hcCCeEEEEEeCCCCcc--cccccCcCCCCCCCCcEEEEEecChH
Q 035585 98 IAEK-----LGLEFSEEAESRRASRLYERL----KKEKMILVILDNIWKYL--DLETVGIPFGDDHRGCKLLLTARDCN 165 (183)
Q Consensus 98 i~~~-----l~~~~~~~~~~~~~~~~~~~~----~~~~~~llvlD~~~~~~--~~~~l~~~~~~~~~~~~iiitsr~~~ 165 (183)
|... +..........+.++.+...+ ..++..++||||+|.+. ..+.|+..+......+++|++|.+..
T Consensus 82 i~~g~~~D~ieidaas~~~VddiR~li~~~~~~p~~g~~KV~IIDEah~Ls~~a~NALLKtLEEPp~~v~FIL~Tt~~~ 160 (647)
T PRK07994 82 IEQGRFVDLIEIDAASRTKVEDTRELLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQ 160 (647)
T ss_pred HHcCCCCCceeecccccCCHHHHHHHHHHHHhhhhcCCCEEEEEechHhCCHHHHHHHHHHHHcCCCCeEEEEecCCcc
Confidence 1100 000000000111122222221 23677899999999774 46666666666666777777776654
No 47
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=98.82 E-value=7.8e-09 Score=77.19 Aligned_cols=55 Identities=15% Similarity=0.274 Sum_probs=41.2
Q ss_pred hHHHHHHHHHHhccCCccEEEEEeCCCCcHHHHHHHHHhHHhhhhcccceEEEEecC
Q 035585 31 RLSTLKSIQDALTDVNVNIVGVYGMGGIGKTTLVKEFARQASEEKLFDQVVFSEVSQ 87 (183)
Q Consensus 31 R~~~l~~l~~~l~~~~~~~v~i~G~~G~GKTtL~~~~~~~~~~~~~~~~~~~~~~~~ 87 (183)
....+..+.+++.....+.+.|+|++|+|||+|++.+++..... ....+|+++..
T Consensus 22 ~~~~~~~l~~~~~~~~~~~lll~G~~G~GKT~la~~~~~~~~~~--~~~~~~i~~~~ 76 (226)
T TIGR03420 22 NAELLAALRQLAAGKGDRFLYLWGESGSGKSHLLQAACAAAEER--GKSAIYLPLAE 76 (226)
T ss_pred cHHHHHHHHHHHhcCCCCeEEEECCCCCCHHHHHHHHHHHHHhc--CCcEEEEeHHH
Confidence 45577777777655667899999999999999999999877643 33456665543
No 48
>PRK14951 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.81 E-value=4.8e-08 Score=82.53 Aligned_cols=142 Identities=13% Similarity=0.195 Sum_probs=80.3
Q ss_pred hhhcCCCcccccchHHHHHHHHHHhccCCc-cEEEEEeCCCCcHHHHHHHHHhHHhhhhcc--cceEEEEecCCcCHHHH
Q 035585 18 WLKSNKGYEAFKSRLSTLKSIQDALTDVNV-NIVGVYGMGGIGKTTLVKEFARQASEEKLF--DQVVFSEVSQTPDIKKI 94 (183)
Q Consensus 18 ~~~~~~~~~~~~gR~~~l~~l~~~l~~~~~-~~v~i~G~~G~GKTtL~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~ 94 (183)
....|.....++|-+..+..|.+++.+.+. +.++++|+.|+||||+++.++..+...... .+.-.-.|... ..
T Consensus 8 ~KyRP~~f~dviGQe~vv~~L~~~l~~~rl~ha~Lf~Gp~GvGKTtlAr~lAk~LnC~~~~~~~~~~~~pCg~C----~~ 83 (618)
T PRK14951 8 RKYRPRSFSEMVGQEHVVQALTNALTQQRLHHAYLFTGTRGVGKTTVSRILAKSLNCQGPDGQGGITATPCGVC----QA 83 (618)
T ss_pred HHHCCCCHHHhcCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhcCCCcccccCCCCCCCCcc----HH
Confidence 344567778899999999999999886555 567999999999999999998876532110 00000000000 01
Q ss_pred HHHHHHH-----hCCCchhHHHHHHHHHHHHHHh----cCCeEEEEEeCCCCcc--cccccCcCCCCCCCCcEEEEEecC
Q 035585 95 HGEIAEK-----LGLEFSEEAESRRASRLYERLK----KEKMILVILDNIWKYL--DLETVGIPFGDDHRGCKLLLTARD 163 (183)
Q Consensus 95 ~~~i~~~-----l~~~~~~~~~~~~~~~~~~~~~----~~~~~llvlD~~~~~~--~~~~l~~~~~~~~~~~~iiitsr~ 163 (183)
+..+... +..........+.++.+.+... .++..++||||+|.+. ..+.++..+......+.+|++|.+
T Consensus 84 C~~i~~g~h~D~~eldaas~~~Vd~iReli~~~~~~p~~g~~KV~IIDEvh~Ls~~a~NaLLKtLEEPP~~~~fIL~Ttd 163 (618)
T PRK14951 84 CRDIDSGRFVDYTELDAASNRGVDEVQQLLEQAVYKPVQGRFKVFMIDEVHMLTNTAFNAMLKTLEEPPEYLKFVLATTD 163 (618)
T ss_pred HHHHHcCCCCceeecCcccccCHHHHHHHHHHHHhCcccCCceEEEEEChhhCCHHHHHHHHHhcccCCCCeEEEEEECC
Confidence 1111000 0000000001112223333221 2456799999999774 466666666665667777777755
No 49
>PRK14964 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.81 E-value=4.8e-08 Score=80.43 Aligned_cols=127 Identities=13% Similarity=0.183 Sum_probs=79.8
Q ss_pred hcCCCcccccchHHHHHHHHHHhccCCc-cEEEEEeCCCCcHHHHHHHHHhHHhhhh-------------------cccc
Q 035585 20 KSNKGYEAFKSRLSTLKSIQDALTDVNV-NIVGVYGMGGIGKTTLVKEFARQASEEK-------------------LFDQ 79 (183)
Q Consensus 20 ~~~~~~~~~~gR~~~l~~l~~~l~~~~~-~~v~i~G~~G~GKTtL~~~~~~~~~~~~-------------------~~~~ 79 (183)
..|.....++|.+...+.|.+++..++. +.++++|++|+||||+|+.++..+.... ....
T Consensus 7 yRP~~f~dliGQe~vv~~L~~a~~~~ri~ha~Lf~Gp~G~GKTT~ArilAk~LnC~~~~~~~pCg~C~~C~~i~~~~~~D 86 (491)
T PRK14964 7 YRPSSFKDLVGQDVLVRILRNAFTLNKIPQSILLVGASGVGKTTCARIISLCLNCSNGPTSDPCGTCHNCISIKNSNHPD 86 (491)
T ss_pred hCCCCHHHhcCcHHHHHHHHHHHHcCCCCceEEEECCCCccHHHHHHHHHHHHcCcCCCCCCCccccHHHHHHhccCCCC
Confidence 3456677889999999999988875554 4899999999999999999987653210 0112
Q ss_pred eEEEEecCCcCHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHH-hcCCeEEEEEeCCCCcc--cccccCcCCCCCCCCcE
Q 035585 80 VVFSEVSQTPDIKKIHGEIAEKLGLEFSEEAESRRASRLYERL-KKEKMILVILDNIWKYL--DLETVGIPFGDDHRGCK 156 (183)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~-~~~~~~llvlD~~~~~~--~~~~l~~~~~~~~~~~~ 156 (183)
++.++..+.....+ .+.+.+ .. .+. ...+..++||||++.+. ..+.++..+....+.+.
T Consensus 87 v~eidaas~~~vdd-IR~Iie----------------~~-~~~P~~~~~KVvIIDEah~Ls~~A~NaLLK~LEePp~~v~ 148 (491)
T PRK14964 87 VIEIDAASNTSVDD-IKVILE----------------NS-CYLPISSKFKVYIIDEVHMLSNSAFNALLKTLEEPAPHVK 148 (491)
T ss_pred EEEEecccCCCHHH-HHHHHH----------------HH-HhccccCCceEEEEeChHhCCHHHHHHHHHHHhCCCCCeE
Confidence 33334333222221 111111 11 111 12567899999998763 36666666666667777
Q ss_pred EEEEecCh
Q 035585 157 LLLTARDC 164 (183)
Q Consensus 157 iiitsr~~ 164 (183)
+|+++.+.
T Consensus 149 fIlatte~ 156 (491)
T PRK14964 149 FILATTEV 156 (491)
T ss_pred EEEEeCCh
Confidence 77776543
No 50
>CHL00095 clpC Clp protease ATP binding subunit
Probab=98.81 E-value=3.7e-08 Score=86.39 Aligned_cols=100 Identities=17% Similarity=0.366 Sum_probs=67.0
Q ss_pred ccccchHHHHHHHHHHhccCCccEEEEEeCCCCcHHHHHHHHHhHHhhhh----cccceEE-EEecCCcCHHHHHHHHHH
Q 035585 26 EAFKSRLSTLKSIQDALTDVNVNIVGVYGMGGIGKTTLVKEFARQASEEK----LFDQVVF-SEVSQTPDIKKIHGEIAE 100 (183)
Q Consensus 26 ~~~~gR~~~l~~l~~~l~~~~~~~v~i~G~~G~GKTtL~~~~~~~~~~~~----~~~~~~~-~~~~~~~~~~~~~~~i~~ 100 (183)
..++||+++++.+.+.|.......++|+|++|+|||++++.++....... .....+| +++. .++.
T Consensus 179 ~~~igr~~ei~~~~~~L~r~~~~n~lL~G~pGvGKTal~~~la~~i~~~~vp~~l~~~~i~~l~~~----------~l~a 248 (821)
T CHL00095 179 DPVIGREKEIERVIQILGRRTKNNPILIGEPGVGKTAIAEGLAQRIVNRDVPDILEDKLVITLDIG----------LLLA 248 (821)
T ss_pred CCCCCcHHHHHHHHHHHcccccCCeEEECCCCCCHHHHHHHHHHHHHhCCCChhhcCCeEEEeeHH----------HHhc
Confidence 46899999999999999877777889999999999999999998876421 1122333 2221 1111
Q ss_pred HhCCCchhHHHHHHHHHHHHHHhcCCeEEEEEeCCCCc
Q 035585 101 KLGLEFSEEAESRRASRLYERLKKEKMILVILDNIWKY 138 (183)
Q Consensus 101 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~llvlD~~~~~ 138 (183)
+....+ .....+..++..+...++.+|+|||+|..
T Consensus 249 --g~~~~g-e~e~rl~~i~~~~~~~~~~ILfiDEih~l 283 (821)
T CHL00095 249 --GTKYRG-EFEERLKRIFDEIQENNNIILVIDEVHTL 283 (821)
T ss_pred --cCCCcc-HHHHHHHHHHHHHHhcCCeEEEEecHHHH
Confidence 111111 22334455666665567899999999744
No 51
>PRK07764 DNA polymerase III subunits gamma and tau; Validated
Probab=98.80 E-value=3.6e-08 Score=85.86 Aligned_cols=129 Identities=11% Similarity=0.108 Sum_probs=78.8
Q ss_pred hcCCCcccccchHHHHHHHHHHhccCCc-cEEEEEeCCCCcHHHHHHHHHhHHhhhhcc--c------------------
Q 035585 20 KSNKGYEAFKSRLSTLKSIQDALTDVNV-NIVGVYGMGGIGKTTLVKEFARQASEEKLF--D------------------ 78 (183)
Q Consensus 20 ~~~~~~~~~~gR~~~l~~l~~~l~~~~~-~~v~i~G~~G~GKTtL~~~~~~~~~~~~~~--~------------------ 78 (183)
+-|.....++|.+..++.|.+++.+.+. +.++++|+.|+||||+++.+.+.+...... .
T Consensus 9 yRP~~f~eiiGqe~v~~~L~~~i~~~ri~Ha~Lf~Gp~G~GKTt~A~~lAr~L~C~~~~~~~pCg~C~sC~~~~~g~~~~ 88 (824)
T PRK07764 9 YRPATFAEVIGQEHVTEPLSTALDSGRINHAYLFSGPRGCGKTSSARILARSLNCVEGPTSTPCGECDSCVALAPGGPGS 88 (824)
T ss_pred hCCCCHHHhcCcHHHHHHHHHHHHhCCCCceEEEECCCCCCHHHHHHHHHHHhCcccCCCCCCCcccHHHHHHHcCCCCC
Confidence 3455667789999999999999886555 458999999999999999999887532110 0
Q ss_pred -ceEEEEecCCcCHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHHhcCCeEEEEEeCCCCcc--cccccCcCCCCCCCCc
Q 035585 79 -QVVFSEVSQTPDIKKIHGEIAEKLGLEFSEEAESRRASRLYERLKKEKMILVILDNIWKYL--DLETVGIPFGDDHRGC 155 (183)
Q Consensus 79 -~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~llvlD~~~~~~--~~~~l~~~~~~~~~~~ 155 (183)
.+++++..+...+.+ .......+...-...+..|+||||+|.+. ..+.|+..+......+
T Consensus 89 ~dv~eidaas~~~Vd~-----------------iR~l~~~~~~~p~~~~~KV~IIDEad~lt~~a~NaLLK~LEEpP~~~ 151 (824)
T PRK07764 89 LDVTEIDAASHGGVDD-----------------ARELRERAFFAPAESRYKIFIIDEAHMVTPQGFNALLKIVEEPPEHL 151 (824)
T ss_pred CcEEEecccccCCHHH-----------------HHHHHHHHHhchhcCCceEEEEechhhcCHHHHHHHHHHHhCCCCCe
Confidence 011111111111100 00011111111123567789999999774 4666766766666777
Q ss_pred EEEEEecChH
Q 035585 156 KLLLTARDCN 165 (183)
Q Consensus 156 ~iiitsr~~~ 165 (183)
.+|+++.+.+
T Consensus 152 ~fIl~tt~~~ 161 (824)
T PRK07764 152 KFIFATTEPD 161 (824)
T ss_pred EEEEEeCChh
Confidence 7777775443
No 52
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=98.80 E-value=6.6e-08 Score=80.11 Aligned_cols=59 Identities=14% Similarity=0.146 Sum_probs=48.3
Q ss_pred hhhhhhcCCCcccccchHHHHHHHHHHhccCC-ccEEEEEeCCCCcHHHHHHHHHhHHhh
Q 035585 15 EEVWLKSNKGYEAFKSRLSTLKSIQDALTDVN-VNIVGVYGMGGIGKTTLVKEFARQASE 73 (183)
Q Consensus 15 ~~~~~~~~~~~~~~~gR~~~l~~l~~~l~~~~-~~~v~i~G~~G~GKTtL~~~~~~~~~~ 73 (183)
+......|.....++|-+..+..|.+.+.+.+ .+.++++|++|+||||+|+.++..+..
T Consensus 10 ~la~kyRP~~f~dliGq~~vv~~L~~ai~~~ri~~a~Lf~Gp~G~GKTT~ArilAk~Lnc 69 (507)
T PRK06645 10 PFARKYRPSNFAELQGQEVLVKVLSYTILNDRLAGGYLLTGIRGVGKTTSARIIAKAVNC 69 (507)
T ss_pred chhhhhCCCCHHHhcCcHHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHHhcC
Confidence 34445567788888999999999998776544 468999999999999999999988754
No 53
>TIGR02397 dnaX_nterm DNA polymerase III, subunit gamma and tau. This model represents the well-conserved first ~ 365 amino acids of the translation of the dnaX gene. The full-length product of the dnaX gene in the model bacterium E. coli is the DNA polymerase III tau subunit. A translational frameshift leads to early termination and a truncated protein subunit gamma, about 1/3 shorter than tau and present in roughly equal amounts. This frameshift mechanism is not necessarily universal for species with DNA polymerase III but appears conserved in the exterme thermophile Thermus thermophilis.
Probab=98.79 E-value=7.3e-08 Score=76.71 Aligned_cols=56 Identities=16% Similarity=0.250 Sum_probs=45.9
Q ss_pred hhhcCCCcccccchHHHHHHHHHHhccCC-ccEEEEEeCCCCcHHHHHHHHHhHHhh
Q 035585 18 WLKSNKGYEAFKSRLSTLKSIQDALTDVN-VNIVGVYGMGGIGKTTLVKEFARQASE 73 (183)
Q Consensus 18 ~~~~~~~~~~~~gR~~~l~~l~~~l~~~~-~~~v~i~G~~G~GKTtL~~~~~~~~~~ 73 (183)
....|.....++|.++.++.|.+.+.+.+ ++.++++|++|+|||++++.+...+..
T Consensus 6 ~~~rp~~~~~iig~~~~~~~l~~~~~~~~~~~~~Ll~G~~G~GKt~~a~~la~~l~~ 62 (355)
T TIGR02397 6 RKYRPQTFEDVIGQEHIVQTLKNAIKNGRIAHAYLFSGPRGTGKTSIARIFAKALNC 62 (355)
T ss_pred HHhCCCcHhhccCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhcC
Confidence 34456677788999999999999887544 457889999999999999999988753
No 54
>PRK14969 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.78 E-value=8.2e-08 Score=80.20 Aligned_cols=126 Identities=14% Similarity=0.242 Sum_probs=78.8
Q ss_pred hhcCCCcccccchHHHHHHHHHHhccCCc-cEEEEEeCCCCcHHHHHHHHHhHHhhhhcc--c-----------------
Q 035585 19 LKSNKGYEAFKSRLSTLKSIQDALTDVNV-NIVGVYGMGGIGKTTLVKEFARQASEEKLF--D----------------- 78 (183)
Q Consensus 19 ~~~~~~~~~~~gR~~~l~~l~~~l~~~~~-~~v~i~G~~G~GKTtL~~~~~~~~~~~~~~--~----------------- 78 (183)
...|.....++|.+..+..|.+++.+.+. +.++++|++|+||||+|+.++..+...... .
T Consensus 9 k~rP~~f~divGq~~v~~~L~~~i~~~~~~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pcg~C~~C~~i~~~~~~ 88 (527)
T PRK14969 9 KWRPKSFSELVGQEHVVRALTNALEQQRLHHAYLFTGTRGVGKTTLARILAKSLNCETGVTATPCGVCSACLEIDSGRFV 88 (527)
T ss_pred HhCCCcHHHhcCcHHHHHHHHHHHHcCCCCEEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCHHHHHHhcCCCC
Confidence 34456677889999999999999886554 457899999999999999999877432110 0
Q ss_pred ceEEEEecCCcCHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHH----hcCCeEEEEEeCCCCcc--cccccCcCCCCCC
Q 035585 79 QVVFSEVSQTPDIKKIHGEIAEKLGLEFSEEAESRRASRLYERL----KKEKMILVILDNIWKYL--DLETVGIPFGDDH 152 (183)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~----~~~~~~llvlD~~~~~~--~~~~l~~~~~~~~ 152 (183)
.+++++...... .+.++.+.... ..++..++||||++.+. ..+.++..+....
T Consensus 89 d~~ei~~~~~~~---------------------vd~ir~l~~~~~~~p~~~~~kVvIIDEad~ls~~a~naLLK~LEepp 147 (527)
T PRK14969 89 DLIEVDAASNTQ---------------------VDAMRELLDNAQYAPTRGRFKVYIIDEVHMLSKSAFNAMLKTLEEPP 147 (527)
T ss_pred ceeEeeccccCC---------------------HHHHHHHHHHHhhCcccCCceEEEEcCcccCCHHHHHHHHHHHhCCC
Confidence 011111111111 11122222222 12567899999999774 3556666666655
Q ss_pred CCcEEEEEecChH
Q 035585 153 RGCKLLLTARDCN 165 (183)
Q Consensus 153 ~~~~iiitsr~~~ 165 (183)
..+.+|++|.+.+
T Consensus 148 ~~~~fIL~t~d~~ 160 (527)
T PRK14969 148 EHVKFILATTDPQ 160 (527)
T ss_pred CCEEEEEEeCChh
Confidence 6777777775543
No 55
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=98.78 E-value=6.4e-08 Score=83.96 Aligned_cols=102 Identities=17% Similarity=0.266 Sum_probs=66.7
Q ss_pred CcccccchHHHHHHHHHHhccCCccEEEEEeCCCCcHHHHHHHHHhHHhhhhc----ccceEE-EEecCCcCHHHHHHHH
Q 035585 24 GYEAFKSRLSTLKSIQDALTDVNVNIVGVYGMGGIGKTTLVKEFARQASEEKL----FDQVVF-SEVSQTPDIKKIHGEI 98 (183)
Q Consensus 24 ~~~~~~gR~~~l~~l~~~l~~~~~~~v~i~G~~G~GKTtL~~~~~~~~~~~~~----~~~~~~-~~~~~~~~~~~~~~~i 98 (183)
.-..++||+.+++.+...|.+.....++++|++|+|||++++.++.++..... ....+| +++. .+
T Consensus 180 ~l~~~igr~~ei~~~~~~L~~~~~~n~lL~G~pG~GKT~l~~~la~~~~~~~~p~~l~~~~~~~~~~~----------~l 249 (731)
T TIGR02639 180 KIDPLIGREDELERTIQVLCRRKKNNPLLVGEPGVGKTAIAEGLALRIAEGKVPENLKNAKIYSLDMG----------SL 249 (731)
T ss_pred CCCcccCcHHHHHHHHHHHhcCCCCceEEECCCCCCHHHHHHHHHHHHHhCCCchhhcCCeEEEecHH----------HH
Confidence 33478999999999999998777788999999999999999999998854321 122222 2211 11
Q ss_pred HHHhCCCchhHHHHHHHHHHHHHHhcCCeEEEEEeCCCCc
Q 035585 99 AEKLGLEFSEEAESRRASRLYERLKKEKMILVILDNIWKY 138 (183)
Q Consensus 99 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~llvlD~~~~~ 138 (183)
... .... ......+..+++.+...++.+|+|||+|..
T Consensus 250 ~a~--~~~~-g~~e~~l~~i~~~~~~~~~~ILfiDEih~l 286 (731)
T TIGR02639 250 LAG--TKYR-GDFEERLKAVVSEIEKEPNAILFIDEIHTI 286 (731)
T ss_pred hhh--cccc-chHHHHHHHHHHHHhccCCeEEEEecHHHH
Confidence 100 0000 122234455555555456899999999854
No 56
>PRK05564 DNA polymerase III subunit delta'; Validated
Probab=98.77 E-value=8e-08 Score=75.42 Aligned_cols=123 Identities=15% Similarity=0.217 Sum_probs=76.6
Q ss_pred ccccchHHHHHHHHHHhccCC-ccEEEEEeCCCCcHHHHHHHHHhHHhhh----hcccceEEEEecCC-cCHHHHHHHHH
Q 035585 26 EAFKSRLSTLKSIQDALTDVN-VNIVGVYGMGGIGKTTLVKEFARQASEE----KLFDQVVFSEVSQT-PDIKKIHGEIA 99 (183)
Q Consensus 26 ~~~~gR~~~l~~l~~~l~~~~-~~~v~i~G~~G~GKTtL~~~~~~~~~~~----~~~~~~~~~~~~~~-~~~~~~~~~i~ 99 (183)
..++|.+...+.+.+.+...+ ++.++++|+.|+|||++|+.++..+-.. .+.+...|...... ....+ .+.+.
T Consensus 4 ~~i~g~~~~~~~l~~~~~~~~~~ha~Lf~G~~G~Gk~~la~~~a~~l~c~~~~~~h~D~~~~~~~~~~~i~v~~-ir~~~ 82 (313)
T PRK05564 4 HTIIGHENIKNRIKNSIIKNRFSHAHIIVGEDGIGKSLLAKEIALKILGKSQQREYVDIIEFKPINKKSIGVDD-IRNII 82 (313)
T ss_pred hhccCcHHHHHHHHHHHHcCCCCceEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCeEEeccccCCCCCHHH-HHHHH
Confidence 356788888888998887544 4677999999999999999999876432 12222122111111 11111 11111
Q ss_pred HHhCCCchhHHHHHHHHHHHHHHhcCCeEEEEEeCCCCcc--cccccCcCCCCCCCCcEEEEEecChH
Q 035585 100 EKLGLEFSEEAESRRASRLYERLKKEKMILVILDNIWKYL--DLETVGIPFGDDHRGCKLLLTARDCN 165 (183)
Q Consensus 100 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~llvlD~~~~~~--~~~~l~~~~~~~~~~~~iiitsr~~~ 165 (183)
+. +...-...++.++|||+++.+. ..+.++..+.....++.+|++|.+.+
T Consensus 83 ~~----------------~~~~p~~~~~kv~iI~~ad~m~~~a~naLLK~LEepp~~t~~il~~~~~~ 134 (313)
T PRK05564 83 EE----------------VNKKPYEGDKKVIIIYNSEKMTEQAQNAFLKTIEEPPKGVFIILLCENLE 134 (313)
T ss_pred HH----------------HhcCcccCCceEEEEechhhcCHHHHHHHHHHhcCCCCCeEEEEEeCChH
Confidence 11 1111113678899999988663 47777777777777888888887654
No 57
>PRK10865 protein disaggregation chaperone; Provisional
Probab=98.77 E-value=4e-08 Score=86.34 Aligned_cols=102 Identities=15% Similarity=0.225 Sum_probs=66.0
Q ss_pred CcccccchHHHHHHHHHHhccCCccEEEEEeCCCCcHHHHHHHHHhHHhhhhc----cc-ceEEEEecCCcCHHHHHHHH
Q 035585 24 GYEAFKSRLSTLKSIQDALTDVNVNIVGVYGMGGIGKTTLVKEFARQASEEKL----FD-QVVFSEVSQTPDIKKIHGEI 98 (183)
Q Consensus 24 ~~~~~~gR~~~l~~l~~~l~~~~~~~v~i~G~~G~GKTtL~~~~~~~~~~~~~----~~-~~~~~~~~~~~~~~~~~~~i 98 (183)
.-..++||+.++..+...|.+.....++++|++|+|||++++.++........ .. .++++++.....-
T Consensus 176 ~l~~vigr~~ei~~~i~iL~r~~~~n~lL~G~pGvGKT~l~~~la~~i~~~~vp~~l~~~~~~~l~l~~l~ag------- 248 (857)
T PRK10865 176 KLDPVIGRDEEIRRTIQVLQRRTKNNPVLIGEPGVGKTAIVEGLAQRIINGEVPEGLKGRRVLALDMGALVAG------- 248 (857)
T ss_pred CCCcCCCCHHHHHHHHHHHhcCCcCceEEECCCCCCHHHHHHHHHHHhhcCCCchhhCCCEEEEEehhhhhhc-------
Confidence 34568999999999999998777788999999999999999999988754211 11 2333333321100
Q ss_pred HHHhCCCchhHHHHHHHHHHHHHHh-cCCeEEEEEeCCCCc
Q 035585 99 AEKLGLEFSEEAESRRASRLYERLK-KEKMILVILDNIWKY 138 (183)
Q Consensus 99 ~~~l~~~~~~~~~~~~~~~~~~~~~-~~~~~llvlD~~~~~ 138 (183)
.... ......+..++..+. ..++.+|+|||+|..
T Consensus 249 -----~~~~-g~~e~~lk~~~~~~~~~~~~~ILfIDEih~l 283 (857)
T PRK10865 249 -----AKYR-GEFEERLKGVLNDLAKQEGNVILFIDELHTM 283 (857)
T ss_pred -----cchh-hhhHHHHHHHHHHHHHcCCCeEEEEecHHHh
Confidence 0000 011223344444432 357899999999866
No 58
>PRK14952 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.77 E-value=8.9e-08 Score=80.55 Aligned_cols=54 Identities=19% Similarity=0.186 Sum_probs=45.0
Q ss_pred hcCCCcccccchHHHHHHHHHHhccCCcc-EEEEEeCCCCcHHHHHHHHHhHHhh
Q 035585 20 KSNKGYEAFKSRLSTLKSIQDALTDVNVN-IVGVYGMGGIGKTTLVKEFARQASE 73 (183)
Q Consensus 20 ~~~~~~~~~~gR~~~l~~l~~~l~~~~~~-~v~i~G~~G~GKTtL~~~~~~~~~~ 73 (183)
..|.....++|.+...+.|.+++.+.+.. .++++|++|+||||+|+.++..+..
T Consensus 7 yRP~~f~eivGq~~i~~~L~~~i~~~r~~ha~Lf~Gp~G~GKTt~A~~lAk~l~c 61 (584)
T PRK14952 7 YRPATFAEVVGQEHVTEPLSSALDAGRINHAYLFSGPRGCGKTSSARILARSLNC 61 (584)
T ss_pred hCCCcHHHhcCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhcc
Confidence 34566778899999999999998865554 5789999999999999999987753
No 59
>PRK14963 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.77 E-value=7e-08 Score=80.08 Aligned_cols=53 Identities=17% Similarity=0.157 Sum_probs=43.2
Q ss_pred cCCCcccccchHHHHHHHHHHhccCCc-cEEEEEeCCCCcHHHHHHHHHhHHhh
Q 035585 21 SNKGYEAFKSRLSTLKSIQDALTDVNV-NIVGVYGMGGIGKTTLVKEFARQASE 73 (183)
Q Consensus 21 ~~~~~~~~~gR~~~l~~l~~~l~~~~~-~~v~i~G~~G~GKTtL~~~~~~~~~~ 73 (183)
.|.....++|.+.....|.+++.+.+. +.++++|++|+||||+|+.++..+..
T Consensus 9 RP~~~~dvvGq~~v~~~L~~~i~~~~l~ha~Lf~GppGtGKTTlA~~lA~~l~c 62 (504)
T PRK14963 9 RPITFDEVVGQEHVKEVLLAALRQGRLGHAYLFSGPRGVGKTTTARLIAMAVNC 62 (504)
T ss_pred CCCCHHHhcChHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHHhc
Confidence 455566788999999999988875544 45699999999999999999988753
No 60
>PRK09111 DNA polymerase III subunits gamma and tau; Validated
Probab=98.76 E-value=6.2e-08 Score=81.78 Aligned_cols=143 Identities=11% Similarity=0.171 Sum_probs=82.0
Q ss_pred hhhhcCCCcccccchHHHHHHHHHHhccCC-ccEEEEEeCCCCcHHHHHHHHHhHHhhhhccc--ceEEEEecCCcCHHH
Q 035585 17 VWLKSNKGYEAFKSRLSTLKSIQDALTDVN-VNIVGVYGMGGIGKTTLVKEFARQASEEKLFD--QVVFSEVSQTPDIKK 93 (183)
Q Consensus 17 ~~~~~~~~~~~~~gR~~~l~~l~~~l~~~~-~~~v~i~G~~G~GKTtL~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~ 93 (183)
...+.|.....++|.+..++.|.+++...+ .+.++++|++|+||||+|+.+++.+....... ...+--|... .
T Consensus 15 a~KyRP~~f~dliGq~~~v~~L~~~~~~gri~ha~L~~Gp~GvGKTt~Ar~lAk~L~c~~~~~~~~~~~~~cg~c----~ 90 (598)
T PRK09111 15 ARKYRPQTFDDLIGQEAMVRTLTNAFETGRIAQAFMLTGVRGVGKTTTARILARALNYEGPDGDGGPTIDLCGVG----E 90 (598)
T ss_pred HhhhCCCCHHHhcCcHHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHhhCcCCccccCCCccccCccc----H
Confidence 334456778889999999999999988555 45799999999999999999998775431110 0000000000 0
Q ss_pred HHHHHHHHhCCCc-----hhHHHHHHHHHHHHHHh----cCCeEEEEEeCCCCcc--cccccCcCCCCCCCCcEEEEEec
Q 035585 94 IHGEIAEKLGLEF-----SEEAESRRASRLYERLK----KEKMILVILDNIWKYL--DLETVGIPFGDDHRGCKLLLTAR 162 (183)
Q Consensus 94 ~~~~i~~~l~~~~-----~~~~~~~~~~~~~~~~~----~~~~~llvlD~~~~~~--~~~~l~~~~~~~~~~~~iiitsr 162 (183)
.+..+........ ......+.++.+...+. ..+..++||||++.+. ..+.|+..+.....++.+|+++.
T Consensus 91 ~C~~i~~g~h~Dv~e~~a~s~~gvd~IReIie~~~~~P~~a~~KVvIIDEad~Ls~~a~naLLKtLEePp~~~~fIl~tt 170 (598)
T PRK09111 91 HCQAIMEGRHVDVLEMDAASHTGVDDIREIIESVRYRPVSARYKVYIIDEVHMLSTAAFNALLKTLEEPPPHVKFIFATT 170 (598)
T ss_pred HHHHHhcCCCCceEEecccccCCHHHHHHHHHHHHhchhcCCcEEEEEEChHhCCHHHHHHHHHHHHhCCCCeEEEEEeC
Confidence 1111211110000 00001112223332221 2566789999998774 36666666666666777776664
Q ss_pred C
Q 035585 163 D 163 (183)
Q Consensus 163 ~ 163 (183)
+
T Consensus 171 e 171 (598)
T PRK09111 171 E 171 (598)
T ss_pred C
Confidence 3
No 61
>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed
Probab=98.76 E-value=2.2e-08 Score=79.12 Aligned_cols=54 Identities=22% Similarity=0.302 Sum_probs=45.2
Q ss_pred hcCCCcccccchHHHHHHHHHHhc-----cCCccEEEEEeCCCCcHHHHHHHHHhHHhh
Q 035585 20 KSNKGYEAFKSRLSTLKSIQDALT-----DVNVNIVGVYGMGGIGKTTLVKEFARQASE 73 (183)
Q Consensus 20 ~~~~~~~~~~gR~~~l~~l~~~l~-----~~~~~~v~i~G~~G~GKTtL~~~~~~~~~~ 73 (183)
..|+....|+||++.++.+..++. +...+.++++|++|+|||++|+.+++.+..
T Consensus 19 ~rP~~~~~~vG~~~~~~~l~~~l~~~~~~~~~~~~~ll~GppG~GKT~la~~ia~~l~~ 77 (328)
T PRK00080 19 LRPKSLDEFIGQEKVKENLKIFIEAAKKRGEALDHVLLYGPPGLGKTTLANIIANEMGV 77 (328)
T ss_pred cCcCCHHHhcCcHHHHHHHHHHHHHHHhcCCCCCcEEEECCCCccHHHHHHHHHHHhCC
Confidence 346678889999999999887765 344578999999999999999999998754
No 62
>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.
Probab=98.75 E-value=3.8e-08 Score=76.85 Aligned_cols=49 Identities=22% Similarity=0.306 Sum_probs=40.9
Q ss_pred cccccchHHHHHHHHHHhc-----cCCccEEEEEeCCCCcHHHHHHHHHhHHhh
Q 035585 25 YEAFKSRLSTLKSIQDALT-----DVNVNIVGVYGMGGIGKTTLVKEFARQASE 73 (183)
Q Consensus 25 ~~~~~gR~~~l~~l~~~l~-----~~~~~~v~i~G~~G~GKTtL~~~~~~~~~~ 73 (183)
...|+|++.+++.|..++. ...++.+.++|++|+|||+|++.+++.+..
T Consensus 3 ~~~~iG~~~~~~~l~~~l~~~~~~~~~~~~~ll~Gp~G~GKT~la~~ia~~~~~ 56 (305)
T TIGR00635 3 LAEFIGQEKVKEQLQLFIEAAKMRQEALDHLLLYGPPGLGKTTLAHIIANEMGV 56 (305)
T ss_pred HHHHcCHHHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCCHHHHHHHHHHHhCC
Confidence 3468999999999988775 344567899999999999999999987653
No 63
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=98.75 E-value=4.7e-08 Score=85.76 Aligned_cols=104 Identities=15% Similarity=0.227 Sum_probs=67.1
Q ss_pred CCCcccccchHHHHHHHHHHhccCCccEEEEEeCCCCcHHHHHHHHHhHHhhhhc----ccc-eEEEEecCCcCHHHHHH
Q 035585 22 NKGYEAFKSRLSTLKSIQDALTDVNVNIVGVYGMGGIGKTTLVKEFARQASEEKL----FDQ-VVFSEVSQTPDIKKIHG 96 (183)
Q Consensus 22 ~~~~~~~~gR~~~l~~l~~~l~~~~~~~v~i~G~~G~GKTtL~~~~~~~~~~~~~----~~~-~~~~~~~~~~~~~~~~~ 96 (183)
+..-..++||+.++..+.+.|.+.....++|+|++|+|||++++.++..+..... ... ++.++++.-.+
T Consensus 183 ~~~ld~~iGr~~ei~~~i~~l~r~~~~n~lLvG~pGvGKTal~~~La~~i~~~~v~~~l~~~~i~~l~l~~l~a------ 256 (852)
T TIGR03345 183 EGKIDPVLGRDDEIRQMIDILLRRRQNNPILTGEAGVGKTAVVEGLALRIAAGDVPPALRNVRLLSLDLGLLQA------ 256 (852)
T ss_pred CCCCCcccCCHHHHHHHHHHHhcCCcCceeEECCCCCCHHHHHHHHHHHHhhCCCCccccCCeEEEeehhhhhc------
Confidence 3445678999999999999998777788899999999999999999998754321 112 22222221100
Q ss_pred HHHHHhCCCchhHHHHHHHHHHHHHHh-cCCeEEEEEeCCCCc
Q 035585 97 EIAEKLGLEFSEEAESRRASRLYERLK-KEKMILVILDNIWKY 138 (183)
Q Consensus 97 ~i~~~l~~~~~~~~~~~~~~~~~~~~~-~~~~~llvlD~~~~~ 138 (183)
+.... ......+..++..+. .+++.+|+|||+|.+
T Consensus 257 ------g~~~~-ge~e~~lk~ii~e~~~~~~~~ILfIDEih~l 292 (852)
T TIGR03345 257 ------GASVK-GEFENRLKSVIDEVKASPQPIILFIDEAHTL 292 (852)
T ss_pred ------ccccc-hHHHHHHHHHHHHHHhcCCCeEEEEeChHHh
Confidence 00011 111223344444443 357899999999866
No 64
>TIGR01242 26Sp45 26S proteasome subunit P45 family. Many proteins may score above the trusted cutoff because an internal
Probab=98.74 E-value=3.8e-08 Score=78.81 Aligned_cols=98 Identities=23% Similarity=0.345 Sum_probs=61.0
Q ss_pred cCCCcccccchHHHHHHHHHHhc----c---------CCccEEEEEeCCCCcHHHHHHHHHhHHhhhhcccceEEEEecC
Q 035585 21 SNKGYEAFKSRLSTLKSIQDALT----D---------VNVNIVGVYGMGGIGKTTLVKEFARQASEEKLFDQVVFSEVSQ 87 (183)
Q Consensus 21 ~~~~~~~~~gR~~~l~~l~~~l~----~---------~~~~~v~i~G~~G~GKTtL~~~~~~~~~~~~~~~~~~~~~~~~ 87 (183)
|.-....+.|++++.+.+.+++. + ..+..++|+|++|+|||++++.+++..... |+.+..
T Consensus 117 p~~~~~di~Gl~~~~~~l~~~i~~~~~~~~~~~~~g~~~p~gvLL~GppGtGKT~lakaia~~l~~~-------~~~v~~ 189 (364)
T TIGR01242 117 PNVSYEDIGGLEEQIREIREAVELPLKHPELFEEVGIEPPKGVLLYGPPGTGKTLLAKAVAHETNAT-------FIRVVG 189 (364)
T ss_pred CCCCHHHhCChHHHHHHHHHHHHHHhcCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhCCCC-------EEecch
Confidence 33344567899999999988764 1 235669999999999999999999876543 122211
Q ss_pred CcCHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHHhcCCeEEEEEeCCCCc
Q 035585 88 TPDIKKIHGEIAEKLGLEFSEEAESRRASRLYERLKKEKMILVILDNIWKY 138 (183)
Q Consensus 88 ~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~llvlD~~~~~ 138 (183)
..+..... + ........++.......+.+|+|||+|..
T Consensus 190 ----~~l~~~~~---g------~~~~~i~~~f~~a~~~~p~il~iDEiD~l 227 (364)
T TIGR01242 190 ----SELVRKYI---G------EGARLVREIFELAKEKAPSIIFIDEIDAI 227 (364)
T ss_pred ----HHHHHHhh---h------HHHHHHHHHHHHHHhcCCcEEEhhhhhhh
Confidence 11111110 0 11122334444444467889999999865
No 65
>PRK14955 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.73 E-value=1.5e-07 Score=76.27 Aligned_cols=144 Identities=14% Similarity=0.201 Sum_probs=78.8
Q ss_pred hcCCCcccccchHHHHHHHHHHhccCCc-cEEEEEeCCCCcHHHHHHHHHhHHhhhhcccceEEEEe-cCCcCHHHHHHH
Q 035585 20 KSNKGYEAFKSRLSTLKSIQDALTDVNV-NIVGVYGMGGIGKTTLVKEFARQASEEKLFDQVVFSEV-SQTPDIKKIHGE 97 (183)
Q Consensus 20 ~~~~~~~~~~gR~~~l~~l~~~l~~~~~-~~v~i~G~~G~GKTtL~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~ 97 (183)
..|.....++|.+.....|.+++.+.+. +.++++||+|+||||+|+.+++.+.........-|... ......-..++.
T Consensus 10 ~RP~~~~eiiGq~~~~~~L~~~~~~~~~~ha~lf~Gp~G~GKtt~A~~~a~~l~c~~~~~~~~~~~~~~~~c~~c~~c~~ 89 (397)
T PRK14955 10 YRPKKFADITAQEHITRTIQNSLRMGRVGHGYIFSGLRGVGKTTAARVFAKAVNCQRMIDDADYLQEVTEPCGECESCRD 89 (397)
T ss_pred cCCCcHhhccChHHHHHHHHHHHHhCCcceeEEEECCCCCCHHHHHHHHHHHhcCCCCcCcccccccCCCCCCCCHHHHH
Confidence 4456677888999999999998886555 45889999999999999999988754211100000000 000000011111
Q ss_pred HHHHhCCC-----chhHHHHHHHHHHHHHH----hcCCeEEEEEeCCCCcc--cccccCcCCCCCCCCcEEEEEecC
Q 035585 98 IAEKLGLE-----FSEEAESRRASRLYERL----KKEKMILVILDNIWKYL--DLETVGIPFGDDHRGCKLLLTARD 163 (183)
Q Consensus 98 i~~~l~~~-----~~~~~~~~~~~~~~~~~----~~~~~~llvlD~~~~~~--~~~~l~~~~~~~~~~~~iiitsr~ 163 (183)
+....... .......+.+..+.+.+ ....+.++|+||++.+. .++.++..+....+.+.+|+++.+
T Consensus 90 ~~~~~~~n~~~~~~~~~~~id~Ir~l~~~~~~~p~~~~~kvvIIdea~~l~~~~~~~LLk~LEep~~~t~~Il~t~~ 166 (397)
T PRK14955 90 FDAGTSLNISEFDAASNNSVDDIRLLRENVRYGPQKGRYRVYIIDEVHMLSIAAFNAFLKTLEEPPPHAIFIFATTE 166 (397)
T ss_pred HhcCCCCCeEeecccccCCHHHHHHHHHHHhhchhcCCeEEEEEeChhhCCHHHHHHHHHHHhcCCCCeEEEEEeCC
Confidence 11100000 00000011222222322 22567799999999774 455666666655567776666643
No 66
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=98.72 E-value=5.1e-08 Score=74.58 Aligned_cols=28 Identities=29% Similarity=0.293 Sum_probs=24.0
Q ss_pred CccEEEEEeCCCCcHHHHHHHHHhHHhh
Q 035585 46 NVNIVGVYGMGGIGKTTLVKEFARQASE 73 (183)
Q Consensus 46 ~~~~v~i~G~~G~GKTtL~~~~~~~~~~ 73 (183)
....++++|++|+||||+|+.++..+..
T Consensus 41 ~~~~vll~GppGtGKTtlA~~ia~~l~~ 68 (261)
T TIGR02881 41 QVLHMIFKGNPGTGKTTVARILGKLFKE 68 (261)
T ss_pred CcceEEEEcCCCCCHHHHHHHHHHHHHh
Confidence 4457899999999999999999987754
No 67
>PRK14959 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.71 E-value=2.1e-07 Score=78.47 Aligned_cols=57 Identities=16% Similarity=0.173 Sum_probs=46.6
Q ss_pred hhhhcCCCcccccchHHHHHHHHHHhccCC-ccEEEEEeCCCCcHHHHHHHHHhHHhh
Q 035585 17 VWLKSNKGYEAFKSRLSTLKSIQDALTDVN-VNIVGVYGMGGIGKTTLVKEFARQASE 73 (183)
Q Consensus 17 ~~~~~~~~~~~~~gR~~~l~~l~~~l~~~~-~~~v~i~G~~G~GKTtL~~~~~~~~~~ 73 (183)
.....|.....++|.+.....|.+++.+.+ .+.++++|++|+||||+|+.+++.+..
T Consensus 7 a~KyRP~sf~dIiGQe~v~~~L~~ai~~~ri~ha~Lf~GPpG~GKTtiArilAk~L~C 64 (624)
T PRK14959 7 TARYRPQTFAEVAGQETVKAILSRAAQENRVAPAYLFSGTRGVGKTTIARIFAKALNC 64 (624)
T ss_pred HHHhCCCCHHHhcCCHHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHhccc
Confidence 344456677788999998888998887654 578999999999999999999987753
No 68
>PRK05896 DNA polymerase III subunits gamma and tau; Validated
Probab=98.70 E-value=1.7e-07 Score=78.72 Aligned_cols=58 Identities=19% Similarity=0.158 Sum_probs=47.8
Q ss_pred hhhhhcCCCcccccchHHHHHHHHHHhccC-CccEEEEEeCCCCcHHHHHHHHHhHHhh
Q 035585 16 EVWLKSNKGYEAFKSRLSTLKSIQDALTDV-NVNIVGVYGMGGIGKTTLVKEFARQASE 73 (183)
Q Consensus 16 ~~~~~~~~~~~~~~gR~~~l~~l~~~l~~~-~~~~v~i~G~~G~GKTtL~~~~~~~~~~ 73 (183)
......|.....++|++..++.|.+++.+. -++.++++||+|+||||+|+.++..+..
T Consensus 6 ~~~KyRP~~F~dIIGQe~iv~~L~~aI~~~rl~hA~Lf~GP~GvGKTTlA~~lAk~L~C 64 (605)
T PRK05896 6 FYRKYRPHNFKQIIGQELIKKILVNAILNNKLTHAYIFSGPRGIGKTSIAKIFAKAINC 64 (605)
T ss_pred HHHHhCCCCHHHhcCcHHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHHhcC
Confidence 344456777888999999999999988654 3467999999999999999999988754
No 69
>PRK07471 DNA polymerase III subunit delta'; Validated
Probab=98.70 E-value=7.9e-09 Score=82.48 Aligned_cols=144 Identities=15% Similarity=0.056 Sum_probs=82.3
Q ss_pred CCCcccccchHHHHHHHHHHhccCCc-cEEEEEeCCCCcHHHHHHHHHhHHhhhhcccceE----EEEecCCcCHHHHHH
Q 035585 22 NKGYEAFKSRLSTLKSIQDALTDVNV-NIVGVYGMGGIGKTTLVKEFARQASEEKLFDQVV----FSEVSQTPDIKKIHG 96 (183)
Q Consensus 22 ~~~~~~~~gR~~~l~~l~~~l~~~~~-~~v~i~G~~G~GKTtL~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~ 96 (183)
|.....++|.+.....|.+.+.+.+. +.++++|+.|+||+++|..++..+-.......-. -.++...... ..++
T Consensus 15 P~~~~~iiGq~~~~~~L~~~~~~~rl~HA~Lf~Gp~G~GK~~lA~~~A~~Llc~~~~~~~~~~~~~~~l~~~~~c-~~c~ 93 (365)
T PRK07471 15 PRETTALFGHAAAEAALLDAYRSGRLHHAWLIGGPQGIGKATLAYRMARFLLATPPPGGDGAVPPPTSLAIDPDH-PVAR 93 (365)
T ss_pred CCchhhccChHHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHHHhCCCCCCCCccccccccccCCCCC-hHHH
Confidence 44566789999999999998886654 4699999999999999999998875432110000 0000000000 0111
Q ss_pred HHHHHhC-----------CCc---hhHHHHHHHHHHHHHHh----cCCeEEEEEeCCCCcc--cccccCcCCCCCCCCcE
Q 035585 97 EIAEKLG-----------LEF---SEEAESRRASRLYERLK----KEKMILVILDNIWKYL--DLETVGIPFGDDHRGCK 156 (183)
Q Consensus 97 ~i~~~l~-----------~~~---~~~~~~~~~~~~~~~~~----~~~~~llvlD~~~~~~--~~~~l~~~~~~~~~~~~ 156 (183)
.+...-. ... ...-..+.++.+...+. .+++.++|||+++.+. ..+.++..+.....++.
T Consensus 94 ~i~~~~HPDl~~i~~~~~~~~~~~~~~I~VdqiR~l~~~~~~~~~~~~~kVviIDead~m~~~aanaLLK~LEepp~~~~ 173 (365)
T PRK07471 94 RIAAGAHGGLLTLERSWNEKGKRLRTVITVDEVRELISFFGLTAAEGGWRVVIVDTADEMNANAANALLKVLEEPPARSL 173 (365)
T ss_pred HHHccCCCCeEEEecccccccccccccccHHHHHHHHHHhCcCcccCCCEEEEEechHhcCHHHHHHHHHHHhcCCCCeE
Confidence 1111000 000 00011122333333332 3677899999999774 45566666665556777
Q ss_pred EEEEecChHH
Q 035585 157 LLLTARDCNV 166 (183)
Q Consensus 157 iiitsr~~~~ 166 (183)
+|++|++.+.
T Consensus 174 ~IL~t~~~~~ 183 (365)
T PRK07471 174 FLLVSHAPAR 183 (365)
T ss_pred EEEEECCchh
Confidence 8888887653
No 70
>TIGR00767 rho transcription termination factor Rho. Members of this family differ in the specificity of RNA binding.
Probab=98.69 E-value=1.8e-07 Score=74.89 Aligned_cols=93 Identities=11% Similarity=0.122 Sum_probs=62.0
Q ss_pred CCccEEEEEeCCCCcHHHHHHHHHhHHhhhhcccceEEEEecCC--cCHHHHHHHHHHHh-----CCCchhH-HHHHHHH
Q 035585 45 VNVNIVGVYGMGGIGKTTLVKEFARQASEEKLFDQVVFSEVSQT--PDIKKIHGEIAEKL-----GLEFSEE-AESRRAS 116 (183)
Q Consensus 45 ~~~~~v~i~G~~G~GKTtL~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~i~~~l-----~~~~~~~-~~~~~~~ 116 (183)
...+.++|+|++|+|||||++.+++.+... +|+..+|+.+... ....++.+.+...+ ....... .......
T Consensus 166 g~Gq~~~IvG~~g~GKTtL~~~i~~~I~~n-hfdv~v~VlLIgER~~EVtDLqrsIlg~Vvast~d~p~~~~~~va~~v~ 244 (415)
T TIGR00767 166 GKGQRGLIVAPPKAGKTVLLQKIAQAITRN-HPEVELIVLLIDERPEEVTDMQRSVKGEVVASTFDEPASRHVQVAEMVI 244 (415)
T ss_pred CCCCEEEEECCCCCChhHHHHHHHHhhccc-CCceEEEEEEcCCCCccHHHHHHHhhceEEEecCCCChHHHHHHHHHHH
Confidence 345779999999999999999999988765 6666778777755 67788888884333 3211110 1111222
Q ss_pred H-HHHHHhcCCeEEEEEeCCCCc
Q 035585 117 R-LYERLKKEKMILVILDNIWKY 138 (183)
Q Consensus 117 ~-~~~~~~~~~~~llvlD~~~~~ 138 (183)
. ......++++++|++|+++..
T Consensus 245 e~Ae~~~~~GkdVVLlIDEitR~ 267 (415)
T TIGR00767 245 EKAKRLVEHKKDVVILLDSITRL 267 (415)
T ss_pred HHHHHHHHcCCCeEEEEEChhHH
Confidence 2 222334589999999999855
No 71
>PRK07940 DNA polymerase III subunit delta'; Validated
Probab=98.69 E-value=1.4e-07 Score=76.00 Aligned_cols=120 Identities=10% Similarity=0.057 Sum_probs=72.8
Q ss_pred ccccchHHHHHHHHHHhccC----------CccEEEEEeCCCCcHHHHHHHHHhHHhhhhcc------------------
Q 035585 26 EAFKSRLSTLKSIQDALTDV----------NVNIVGVYGMGGIGKTTLVKEFARQASEEKLF------------------ 77 (183)
Q Consensus 26 ~~~~gR~~~l~~l~~~l~~~----------~~~~v~i~G~~G~GKTtL~~~~~~~~~~~~~~------------------ 77 (183)
..++|.+..++.|.+++... -++.++++||+|+|||++|+.++..+-.....
T Consensus 5 ~~IiGq~~~~~~L~~~i~~~~~~~~~~~~~l~ha~Lf~Gp~G~GKt~lA~~lA~~l~c~~~~~~~Cg~C~~C~~~~~~~h 84 (394)
T PRK07940 5 DDLVGQEAVVAELRAAARAARADVAAAGSGMTHAWLFTGPPGSGRSVAARAFAAALQCTDPDEPGCGECRACRTVLAGTH 84 (394)
T ss_pred hhccChHHHHHHHHHHHHhccccccccCCCCCeEEEEECCCCCcHHHHHHHHHHHhCCCCCCCCCCCCCHHHHHHhcCCC
Confidence 35678888888899888754 35779999999999999999998876432100
Q ss_pred cceEEEEecCCcCHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHHh----cCCeEEEEEeCCCCcc--cccccCcCCCCC
Q 035585 78 DQVVFSEVSQTPDIKKIHGEIAEKLGLEFSEEAESRRASRLYERLK----KEKMILVILDNIWKYL--DLETVGIPFGDD 151 (183)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~----~~~~~llvlD~~~~~~--~~~~l~~~~~~~ 151 (183)
..+.++...... ...+.++.+.+... ..+..+++|||++.+. ..+.++..+...
T Consensus 85 pD~~~i~~~~~~--------------------i~i~~iR~l~~~~~~~p~~~~~kViiIDead~m~~~aanaLLk~LEep 144 (394)
T PRK07940 85 PDVRVVAPEGLS--------------------IGVDEVRELVTIAARRPSTGRWRIVVIEDADRLTERAANALLKAVEEP 144 (394)
T ss_pred CCEEEecccccc--------------------CCHHHHHHHHHHHHhCcccCCcEEEEEechhhcCHHHHHHHHHHhhcC
Confidence 001111111000 00111222322221 2566789999999774 345565666555
Q ss_pred CCCcEEEEEecChH
Q 035585 152 HRGCKLLLTARDCN 165 (183)
Q Consensus 152 ~~~~~iiitsr~~~ 165 (183)
.+++.+|++|.+.+
T Consensus 145 ~~~~~fIL~a~~~~ 158 (394)
T PRK07940 145 PPRTVWLLCAPSPE 158 (394)
T ss_pred CCCCeEEEEECChH
Confidence 66777777777644
No 72
>COG1222 RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones]
Probab=98.68 E-value=1.3e-07 Score=73.81 Aligned_cols=94 Identities=24% Similarity=0.305 Sum_probs=65.3
Q ss_pred cccccchHHHHHHHHHHhc-------------cCCccEEEEEeCCCCcHHHHHHHHHhHHhhhhcccceEEEEecCCcCH
Q 035585 25 YEAFKSRLSTLKSIQDALT-------------DVNVNIVGVYGMGGIGKTTLVKEFARQASEEKLFDQVVFSEVSQTPDI 91 (183)
Q Consensus 25 ~~~~~gR~~~l~~l~~~l~-------------~~~~~~v~i~G~~G~GKTtL~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 91 (183)
..+.=|-+++++.|.+..+ =.++.-|++|||||+|||.||++++++-... |+.+...
T Consensus 150 Y~dIGGL~~Qi~EirE~VELPL~~PElF~~~GI~PPKGVLLYGPPGTGKTLLAkAVA~~T~At-------FIrvvgS--- 219 (406)
T COG1222 150 YEDIGGLDEQIQEIREVVELPLKNPELFEELGIDPPKGVLLYGPPGTGKTLLAKAVANQTDAT-------FIRVVGS--- 219 (406)
T ss_pred hhhccCHHHHHHHHHHHhcccccCHHHHHHcCCCCCCceEeeCCCCCcHHHHHHHHHhccCce-------EEEeccH---
Confidence 3344567777888877654 1466789999999999999999999976553 3333331
Q ss_pred HHHHHHHHHHhCCCchhHHHHHHHHHHHHHHhcCCeEEEEEeCCCCc
Q 035585 92 KKIHGEIAEKLGLEFSEEAESRRASRLYERLKKEKMILVILDNIWKY 138 (183)
Q Consensus 92 ~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~llvlD~~~~~ 138 (183)
.+.+.+.. .....++.++...++..+.+|+|||+|..
T Consensus 220 -----ElVqKYiG-----EGaRlVRelF~lArekaPsIIFiDEIDAI 256 (406)
T COG1222 220 -----ELVQKYIG-----EGARLVRELFELAREKAPSIIFIDEIDAI 256 (406)
T ss_pred -----HHHHHHhc-----cchHHHHHHHHHHhhcCCeEEEEechhhh
Confidence 22222211 13456678888888899999999999843
No 73
>COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=98.68 E-value=1.2e-07 Score=71.49 Aligned_cols=60 Identities=15% Similarity=0.147 Sum_probs=38.2
Q ss_pred HHHHHHhcCCeEEEEEeCCCCccc------ccccCcCCCCCCCCcEEEEEecChHHHhhcCCCCcchh
Q 035585 117 RLYERLKKEKMILVILDNIWKYLD------LETVGIPFGDDHRGCKLLLTARDCNVLLNMSLCRSEEE 178 (183)
Q Consensus 117 ~~~~~~~~~~~~llvlD~~~~~~~------~~~l~~~~~~~~~~~~iiitsr~~~~~~~~~~~~~~~~ 178 (183)
-++.+...+++-+|+|||.-..-+ +-.++..+... |+.|+++|||-+.+........+..
T Consensus 148 V~lARAL~~~p~lllLDEP~~gvD~~~~~~i~~lL~~l~~e--g~tIl~vtHDL~~v~~~~D~vi~Ln 213 (254)
T COG1121 148 VLLARALAQNPDLLLLDEPFTGVDVAGQKEIYDLLKELRQE--GKTVLMVTHDLGLVMAYFDRVICLN 213 (254)
T ss_pred HHHHHHhccCCCEEEecCCcccCCHHHHHHHHHHHHHHHHC--CCEEEEEeCCcHHhHhhCCEEEEEc
Confidence 344444458899999999753322 22233333333 8999999999998886655544433
No 74
>PRK09376 rho transcription termination factor Rho; Provisional
Probab=98.68 E-value=1.4e-07 Score=75.16 Aligned_cols=92 Identities=13% Similarity=0.146 Sum_probs=60.0
Q ss_pred CccEEEEEeCCCCcHHHHHHHHHhHHhhhhcccceEEEEecCCc--CHHHHHHHHHHHhCCC---chhHHHH---HHHHH
Q 035585 46 NVNIVGVYGMGGIGKTTLVKEFARQASEEKLFDQVVFSEVSQTP--DIKKIHGEIAEKLGLE---FSEEAES---RRASR 117 (183)
Q Consensus 46 ~~~~v~i~G~~G~GKTtL~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~i~~~l~~~---~~~~~~~---~~~~~ 117 (183)
+.+-.+|+|++|+|||||++.+++..... +|+..+|+.+.... ...++...+...+... .+..... .....
T Consensus 168 kGQR~lIvgppGvGKTTLaK~Ian~I~~n-hFDv~~~VvLIgER~~EVtdiqrsIlg~vv~st~d~~~~~~~~~a~~~ie 246 (416)
T PRK09376 168 KGQRGLIVAPPKAGKTVLLQNIANSITTN-HPEVHLIVLLIDERPEEVTDMQRSVKGEVVASTFDEPAERHVQVAEMVIE 246 (416)
T ss_pred cCceEEEeCCCCCChhHHHHHHHHHHHhh-cCCeEEEEEEeCCchhHHHHHHHHhcCcEEEECCCCCHHHHHHHHHHHHH
Confidence 44678899999999999999999988876 67778888777664 5666666665322111 1111111 11112
Q ss_pred HHHHH-hcCCeEEEEEeCCCCc
Q 035585 118 LYERL-KKEKMILVILDNIWKY 138 (183)
Q Consensus 118 ~~~~~-~~~~~~llvlD~~~~~ 138 (183)
..+++ ..++.++|++|+++..
T Consensus 247 ~Ae~~~e~G~dVlL~iDsItR~ 268 (416)
T PRK09376 247 KAKRLVEHGKDVVILLDSITRL 268 (416)
T ss_pred HHHHHHHcCCCEEEEEEChHHH
Confidence 22222 3579999999999754
No 75
>PF05673 DUF815: Protein of unknown function (DUF815); InterPro: IPR008533 This domain consists of several bacterial proteins of unknown function.
Probab=98.67 E-value=1.4e-07 Score=70.62 Aligned_cols=125 Identities=15% Similarity=0.216 Sum_probs=80.2
Q ss_pred hhhhhcCCCcccccchHHHHHHHHHHhc----cCCccEEEEEeCCCCcHHHHHHHHHhHHhhhhcccceEEEEecCC--c
Q 035585 16 EVWLKSNKGYEAFKSRLSTLKSIQDALT----DVNVNIVGVYGMGGIGKTTLVKEFARQASEEKLFDQVVFSEVSQT--P 89 (183)
Q Consensus 16 ~~~~~~~~~~~~~~gR~~~l~~l~~~l~----~~~~~~v~i~G~~G~GKTtL~~~~~~~~~~~~~~~~~~~~~~~~~--~ 89 (183)
++....+.....++|-+.+.+.|.+... ..+...++|||..|+|||++++++.+.+..+. ...+.+... .
T Consensus 17 ~i~~~~~~~l~~L~Gie~Qk~~l~~Nt~~Fl~G~pannvLL~G~rGtGKSSlVkall~~y~~~G----LRlIev~k~~L~ 92 (249)
T PF05673_consen 17 PIKHPDPIRLDDLIGIERQKEALIENTEQFLQGLPANNVLLWGARGTGKSSLVKALLNEYADQG----LRLIEVSKEDLG 92 (249)
T ss_pred ecCCCCCCCHHHhcCHHHHHHHHHHHHHHHHcCCCCcceEEecCCCCCHHHHHHHHHHHHhhcC----ceEEEECHHHhc
Confidence 3444445666778898888888876543 56778899999999999999999999887752 333444332 2
Q ss_pred CHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHHh-cCCeEEEEEeCCC--Cc-cc---ccccCc-CCCCCCCCcEEEEEe
Q 035585 90 DIKKIHGEIAEKLGLEFSEEAESRRASRLYERLK-KEKMILVILDNIW--KY-LD---LETVGI-PFGDDHRGCKLLLTA 161 (183)
Q Consensus 90 ~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~-~~~~~llvlD~~~--~~-~~---~~~l~~-~~~~~~~~~~iiits 161 (183)
.+ ..++..++ .+.+.||++||+. .. .. +..++. .+...+.+..|..||
T Consensus 93 ~l------------------------~~l~~~l~~~~~kFIlf~DDLsFe~~d~~yk~LKs~LeGgle~~P~NvliyATS 148 (249)
T PF05673_consen 93 DL------------------------PELLDLLRDRPYKFILFCDDLSFEEGDTEYKALKSVLEGGLEARPDNVLIYATS 148 (249)
T ss_pred cH------------------------HHHHHHHhcCCCCEEEEecCCCCCCCcHHHHHHHHHhcCccccCCCcEEEEEec
Confidence 22 22333332 3689999999974 11 11 222221 222344466777888
Q ss_pred cChHHHh
Q 035585 162 RDCNVLL 168 (183)
Q Consensus 162 r~~~~~~ 168 (183)
..++++.
T Consensus 149 NRRHLv~ 155 (249)
T PF05673_consen 149 NRRHLVP 155 (249)
T ss_pred chhhccc
Confidence 8777766
No 76
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=98.66 E-value=1.2e-07 Score=83.55 Aligned_cols=102 Identities=15% Similarity=0.287 Sum_probs=65.8
Q ss_pred CcccccchHHHHHHHHHHhccCCccEEEEEeCCCCcHHHHHHHHHhHHhhhhc----ccc-eEEEEecCCcCHHHHHHHH
Q 035585 24 GYEAFKSRLSTLKSIQDALTDVNVNIVGVYGMGGIGKTTLVKEFARQASEEKL----FDQ-VVFSEVSQTPDIKKIHGEI 98 (183)
Q Consensus 24 ~~~~~~gR~~~l~~l~~~l~~~~~~~v~i~G~~G~GKTtL~~~~~~~~~~~~~----~~~-~~~~~~~~~~~~~~~~~~i 98 (183)
.-..++||+.++..+...|.+.....++|+|++|+|||++++.++.++..... ... ++++++.. +
T Consensus 171 ~~~~~igr~~ei~~~~~~l~r~~~~n~lL~G~pGvGKT~l~~~la~~i~~~~~p~~l~~~~~~~l~~~~----------l 240 (852)
T TIGR03346 171 KLDPVIGRDEEIRRTIQVLSRRTKNNPVLIGEPGVGKTAIVEGLAQRIVNGDVPESLKNKRLLALDMGA----------L 240 (852)
T ss_pred CCCcCCCcHHHHHHHHHHHhcCCCCceEEEcCCCCCHHHHHHHHHHHHhccCCchhhcCCeEEEeeHHH----------H
Confidence 34568999999999999998777788899999999999999999988754311 112 33332211 1
Q ss_pred HHHhCCCchhHHHHHHHHHHHHHHh-cCCeEEEEEeCCCCc
Q 035585 99 AEKLGLEFSEEAESRRASRLYERLK-KEKMILVILDNIWKY 138 (183)
Q Consensus 99 ~~~l~~~~~~~~~~~~~~~~~~~~~-~~~~~llvlD~~~~~ 138 (183)
.. +..... .....+..++..+. ..++.+|+|||+|..
T Consensus 241 ~a--~~~~~g-~~e~~l~~~l~~~~~~~~~~ILfIDEih~l 278 (852)
T TIGR03346 241 IA--GAKYRG-EFEERLKAVLNEVTKSEGQIILFIDELHTL 278 (852)
T ss_pred hh--cchhhh-hHHHHHHHHHHHHHhcCCCeEEEeccHHHh
Confidence 00 000011 12223444555443 256899999999865
No 77
>PRK09112 DNA polymerase III subunit delta'; Validated
Probab=98.65 E-value=7.4e-08 Score=76.56 Aligned_cols=141 Identities=12% Similarity=0.066 Sum_probs=79.9
Q ss_pred CCCcccccchHHHHHHHHHHhccCC-ccEEEEEeCCCCcHHHHHHHHHhHHhhhhc--ccceEEEEecCCcCHHHHHHHH
Q 035585 22 NKGYEAFKSRLSTLKSIQDALTDVN-VNIVGVYGMGGIGKTTLVKEFARQASEEKL--FDQVVFSEVSQTPDIKKIHGEI 98 (183)
Q Consensus 22 ~~~~~~~~gR~~~l~~l~~~l~~~~-~~~v~i~G~~G~GKTtL~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~i 98 (183)
|.....++|.++....|...+.+.+ ++.++++|+.|+||||++..++..+-.... +..... ......-..++.+
T Consensus 19 P~~~~~l~Gh~~a~~~L~~a~~~grl~ha~L~~G~~G~GKttlA~~lA~~Llc~~~~~~~~~~~---~~~~~~c~~c~~i 95 (351)
T PRK09112 19 PSENTRLFGHEEAEAFLAQAYREGKLHHALLFEGPEGIGKATLAFHLANHILSHPDPAEAPETL---ADPDPASPVWRQI 95 (351)
T ss_pred CCchhhccCcHHHHHHHHHHHHcCCCCeeEeeECCCCCCHHHHHHHHHHHHcCCCccccCcccc---CCCCCCCHHHHHH
Confidence 4566778999999999999988555 356999999999999999999988754210 111100 0000001122222
Q ss_pred HHH-------hCCC--ch-----hHHHHHHHHHHHHHHh----cCCeEEEEEeCCCCcc--cccccCcCCCCCCCCcEEE
Q 035585 99 AEK-------LGLE--FS-----EEAESRRASRLYERLK----KEKMILVILDNIWKYL--DLETVGIPFGDDHRGCKLL 158 (183)
Q Consensus 99 ~~~-------l~~~--~~-----~~~~~~~~~~~~~~~~----~~~~~llvlD~~~~~~--~~~~l~~~~~~~~~~~~ii 158 (183)
... +..+ .. ..-..+.+..+.+.+. .++..++|||+++.+. ..+.++..+......+.+|
T Consensus 96 ~~~~hPdl~~l~~~~~~~~~~~~~~I~vd~iR~l~~~l~~~~~~g~~rVviIDeAd~l~~~aanaLLk~LEEpp~~~~fi 175 (351)
T PRK09112 96 AQGAHPNLLHITRPFDEKTGKFKTAITVDEIRRVGHFLSQTSGDGNWRIVIIDPADDMNRNAANAILKTLEEPPARALFI 175 (351)
T ss_pred HcCCCCCEEEeecccccccccccccCCHHHHHHHHHHhhhccccCCceEEEEEchhhcCHHHHHHHHHHHhcCCCCceEE
Confidence 211 0000 00 0001122333333332 3577899999999774 3555555555544566666
Q ss_pred EEecChH
Q 035585 159 LTARDCN 165 (183)
Q Consensus 159 itsr~~~ 165 (183)
++|+...
T Consensus 176 Lit~~~~ 182 (351)
T PRK09112 176 LISHSSG 182 (351)
T ss_pred EEECChh
Confidence 6665543
No 78
>TIGR00678 holB DNA polymerase III, delta' subunit. At position 126-127 of the seed alignment, this family lacks the HM motif of gamma/tau; at 132 it has a near-invariant A vs. an invariant F in gamma/tau.
Probab=98.65 E-value=3.2e-07 Score=66.69 Aligned_cols=108 Identities=15% Similarity=0.111 Sum_probs=61.6
Q ss_pred HHHHHhccCCc-cEEEEEeCCCCcHHHHHHHHHhHHhhhhccc-------------------ceEEEEecCCcCHHHHHH
Q 035585 37 SIQDALTDVNV-NIVGVYGMGGIGKTTLVKEFARQASEEKLFD-------------------QVVFSEVSQTPDIKKIHG 96 (183)
Q Consensus 37 ~l~~~l~~~~~-~~v~i~G~~G~GKTtL~~~~~~~~~~~~~~~-------------------~~~~~~~~~~~~~~~~~~ 96 (183)
.|.+.+.+.+. +.++++|++|+|||++++.+...+....... ...++.......
T Consensus 3 ~l~~~i~~~~~~~~~L~~G~~G~gkt~~a~~~~~~l~~~~~~~~~~c~~~~~c~~~~~~~~~d~~~~~~~~~~~------ 76 (188)
T TIGR00678 3 QLKRALEKGRLAHAYLFAGPEGVGKELLALALAKALLCEQPGGGEPCGECPSCRLIEAGNHPDLHRLEPEGQSI------ 76 (188)
T ss_pred HHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCCCcEEEeccccCcC------
Confidence 34555544444 6799999999999999999988875421000 011111111000
Q ss_pred HHHHHhCCCchhHHHHHHHHHHHHHH----hcCCeEEEEEeCCCCcc--cccccCcCCCCCCCCcEEEEEecCh
Q 035585 97 EIAEKLGLEFSEEAESRRASRLYERL----KKEKMILVILDNIWKYL--DLETVGIPFGDDHRGCKLLLTARDC 164 (183)
Q Consensus 97 ~i~~~l~~~~~~~~~~~~~~~~~~~~----~~~~~~llvlD~~~~~~--~~~~l~~~~~~~~~~~~iiitsr~~ 164 (183)
..+.+..+.+.+ ...++.++||||++.+. ..+.++..+....+.+.+|+++.+.
T Consensus 77 --------------~~~~i~~i~~~~~~~~~~~~~kviiide~~~l~~~~~~~Ll~~le~~~~~~~~il~~~~~ 136 (188)
T TIGR00678 77 --------------KVDQVRELVEFLSRTPQESGRRVVIIEDAERMNEAAANALLKTLEEPPPNTLFILITPSP 136 (188)
T ss_pred --------------CHHHHHHHHHHHccCcccCCeEEEEEechhhhCHHHHHHHHHHhcCCCCCeEEEEEECCh
Confidence 011122222222 12677899999998774 3555666665555567777777654
No 79
>KOG2543 consensus Origin recognition complex, subunit 5 [Replication, recombination and repair]
Probab=98.65 E-value=4.2e-07 Score=71.58 Aligned_cols=110 Identities=22% Similarity=0.291 Sum_probs=79.1
Q ss_pred ccccchHHHHHHHHHHhccCC---ccEEEEEeCCCCcHHHHHHHHHhHHhhhhcccceEEEEecCCcCHHHHHHHHHHHh
Q 035585 26 EAFKSRLSTLKSIQDALTDVN---VNIVGVYGMGGIGKTTLVKEFARQASEEKLFDQVVFSEVSQTPDIKKIHGEIAEKL 102 (183)
Q Consensus 26 ~~~~gR~~~l~~l~~~l~~~~---~~~v~i~G~~G~GKTtL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l 102 (183)
..+.+|+.++..+...+.+.+ +..+.|+|..|+|||.+.+++++.... ..+|+++-...+...++..|+...
T Consensus 6 ~~v~~Re~qi~~L~~Llg~~~~~~PS~~~iyG~sgTGKT~~~r~~l~~~n~-----~~vw~n~~ecft~~~lle~IL~~~ 80 (438)
T KOG2543|consen 6 PNVPCRESQIRRLKSLLGNNSCTIPSIVHIYGHSGTGKTYLVRQLLRKLNL-----ENVWLNCVECFTYAILLEKILNKS 80 (438)
T ss_pred cCccchHHHHHHHHHHhCCCCcccceeEEEeccCCCchhHHHHHHHhhcCC-----cceeeehHHhccHHHHHHHHHHHh
Confidence 467899999999999987433 234689999999999999999988632 357999999999999999999988
Q ss_pred C-CCchhHHHH---HHHHHHHHHHh-------cCCeEEEEEeCCCCccc
Q 035585 103 G-LEFSEEAES---RRASRLYERLK-------KEKMILVILDNIWKYLD 140 (183)
Q Consensus 103 ~-~~~~~~~~~---~~~~~~~~~~~-------~~~~~llvlD~~~~~~~ 140 (183)
. ...++.... +.+......+. .++.++||+|+++...+
T Consensus 81 ~~~d~dg~~~~~~~en~~d~i~~l~q~~~~t~~d~~~~liLDnad~lrD 129 (438)
T KOG2543|consen 81 QLADKDGDKVEGDAENFSDFIYLLVQWPAATNRDQKVFLILDNADALRD 129 (438)
T ss_pred ccCCCchhhhhhHHHHHHHHHHHHHhhHHhhccCceEEEEEcCHHhhhc
Confidence 4 332222111 22222222221 24689999999986654
No 80
>PRK14948 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.64 E-value=4.6e-07 Score=77.03 Aligned_cols=141 Identities=12% Similarity=0.123 Sum_probs=80.5
Q ss_pred hhcCCCcccccchHHHHHHHHHHhccCC-ccEEEEEeCCCCcHHHHHHHHHhHHhhhhcccceEEEEecCCcCHHHHHHH
Q 035585 19 LKSNKGYEAFKSRLSTLKSIQDALTDVN-VNIVGVYGMGGIGKTTLVKEFARQASEEKLFDQVVFSEVSQTPDIKKIHGE 97 (183)
Q Consensus 19 ~~~~~~~~~~~gR~~~l~~l~~~l~~~~-~~~v~i~G~~G~GKTtL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 97 (183)
...|.....++|.+.....|..++...+ .+.++++|++|+||||+|+.++..+......... . ..+..-..++.
T Consensus 9 kyRP~~f~~liGq~~i~~~L~~~l~~~rl~~a~Lf~Gp~G~GKttlA~~lAk~L~c~~~~~~~-~----~~Cg~C~~C~~ 83 (620)
T PRK14948 9 KYRPQRFDELVGQEAIATTLKNALISNRIAPAYLFTGPRGTGKTSSARILAKSLNCLNSDKPT-P----EPCGKCELCRA 83 (620)
T ss_pred HhCCCcHhhccChHHHHHHHHHHHHcCCCCceEEEECCCCCChHHHHHHHHHHhcCCCcCCCC-C----CCCcccHHHHH
Confidence 3456677788999999999999887554 3688999999999999999999987543111000 0 00010111222
Q ss_pred HHHHhCCCc-----hhHHHHHHHHHHHHHHh----cCCeEEEEEeCCCCcc--cccccCcCCCCCCCCcEEEEEecCh
Q 035585 98 IAEKLGLEF-----SEEAESRRASRLYERLK----KEKMILVILDNIWKYL--DLETVGIPFGDDHRGCKLLLTARDC 164 (183)
Q Consensus 98 i~~~l~~~~-----~~~~~~~~~~~~~~~~~----~~~~~llvlD~~~~~~--~~~~l~~~~~~~~~~~~iiitsr~~ 164 (183)
+........ ......+.++.+...+. ..+..++||||++.+. ..+.|+..+......+.+|+++.+.
T Consensus 84 i~~g~h~D~~ei~~~~~~~vd~IReii~~a~~~p~~~~~KViIIDEad~Lt~~a~naLLK~LEePp~~tvfIL~t~~~ 161 (620)
T PRK14948 84 IAAGNALDVIEIDAASNTGVDNIRELIERAQFAPVQARWKVYVIDECHMLSTAAFNALLKTLEEPPPRVVFVLATTDP 161 (620)
T ss_pred HhcCCCccEEEEeccccCCHHHHHHHHHHHhhChhcCCceEEEEECccccCHHHHHHHHHHHhcCCcCeEEEEEeCCh
Confidence 211111000 00011122233332221 2566799999999774 4556666665555566666666544
No 81
>PRK14970 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.63 E-value=4.1e-07 Score=72.92 Aligned_cols=57 Identities=16% Similarity=0.264 Sum_probs=46.9
Q ss_pred hhhhcCCCcccccchHHHHHHHHHHhccCC-ccEEEEEeCCCCcHHHHHHHHHhHHhh
Q 035585 17 VWLKSNKGYEAFKSRLSTLKSIQDALTDVN-VNIVGVYGMGGIGKTTLVKEFARQASE 73 (183)
Q Consensus 17 ~~~~~~~~~~~~~gR~~~l~~l~~~l~~~~-~~~v~i~G~~G~GKTtL~~~~~~~~~~ 73 (183)
.....|.....++|.+...+.+.+.+.+.+ ++.++++|++|+|||++++.+.+.+..
T Consensus 8 ~~k~rP~~~~~iig~~~~~~~l~~~i~~~~~~~~~L~~G~~G~GKt~~a~~la~~l~~ 65 (367)
T PRK14970 8 ARKYRPQTFDDVVGQSHITNTLLNAIENNHLAQALLFCGPRGVGKTTCARILARKINQ 65 (367)
T ss_pred HHHHCCCcHHhcCCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhcC
Confidence 334556777788999999999999987544 458999999999999999999887654
No 82
>COG0470 HolB ATPase involved in DNA replication [DNA replication, recombination, and repair]
Probab=98.62 E-value=3.1e-07 Score=72.06 Aligned_cols=122 Identities=18% Similarity=0.153 Sum_probs=74.1
Q ss_pred ccchHHHHHHHHHHhc-cCCcc-EEEEEeCCCCcHHHHHHHHHhHHhhhhc-------------------ccceEEEEec
Q 035585 28 FKSRLSTLKSIQDALT-DVNVN-IVGVYGMGGIGKTTLVKEFARQASEEKL-------------------FDQVVFSEVS 86 (183)
Q Consensus 28 ~~gR~~~l~~l~~~l~-~~~~~-~v~i~G~~G~GKTtL~~~~~~~~~~~~~-------------------~~~~~~~~~~ 86 (183)
+++-+.....+..+.. ..+.+ .++++||+|+||||+|..+++.+..... ...+..++.+
T Consensus 3 ~~~~~~~~~~l~~~~~~~~~~~halL~~Gp~G~Gktt~a~~lA~~l~~~~~~~~~~~~~~~~~~~~~~~~~~d~lel~~s 82 (325)
T COG0470 3 LVPWQEAVKRLLVQALESGRLPHALLFYGPPGVGKTTAALALAKELLCENPTGLLPCGHCRSCKLIPAGNHPDFLELNPS 82 (325)
T ss_pred cccchhHHHHHHHHHHhcCCCCceeeeeCCCCCCHHHHHHHHHHHHhCCCcccCCcccchhhhhHHhhcCCCceEEeccc
Confidence 3455666667776665 33344 5999999999999999999988864321 1123333443
Q ss_pred CCcC---HHHHHHHHHHHhCCCchhHHHHHHHHHHHHHHhcCCeEEEEEeCCCCcc--cccccCcCCCCCCCCcEEEEEe
Q 035585 87 QTPD---IKKIHGEIAEKLGLEFSEEAESRRASRLYERLKKEKMILVILDNIWKYL--DLETVGIPFGDDHRGCKLLLTA 161 (183)
Q Consensus 87 ~~~~---~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~llvlD~~~~~~--~~~~l~~~~~~~~~~~~iiits 161 (183)
.... ..+..+.+.+...... ...+..+++||++|.+. ..+.++..+-.....+.+|++|
T Consensus 83 ~~~~~~i~~~~vr~~~~~~~~~~----------------~~~~~kviiidead~mt~~A~nallk~lEep~~~~~~il~~ 146 (325)
T COG0470 83 DLRKIDIIVEQVRELAEFLSESP----------------LEGGYKVVIIDEADKLTEDAANALLKTLEEPPKNTRFILIT 146 (325)
T ss_pred ccCCCcchHHHHHHHHHHhccCC----------------CCCCceEEEeCcHHHHhHHHHHHHHHHhccCCCCeEEEEEc
Confidence 3322 1222222222211110 12678899999999774 4556666666666778888888
Q ss_pred cChH
Q 035585 162 RDCN 165 (183)
Q Consensus 162 r~~~ 165 (183)
.+..
T Consensus 147 n~~~ 150 (325)
T COG0470 147 NDPS 150 (325)
T ss_pred CChh
Confidence 7443
No 83
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed
Probab=98.62 E-value=2.4e-07 Score=79.89 Aligned_cols=54 Identities=26% Similarity=0.340 Sum_probs=43.6
Q ss_pred hhcCCCcccccchHHHHH---HHHHHhccCCccEEEEEeCCCCcHHHHHHHHHhHHh
Q 035585 19 LKSNKGYEAFKSRLSTLK---SIQDALTDVNVNIVGVYGMGGIGKTTLVKEFARQAS 72 (183)
Q Consensus 19 ~~~~~~~~~~~gR~~~l~---~l~~~l~~~~~~~v~i~G~~G~GKTtL~~~~~~~~~ 72 (183)
...|.....|+|++..+. .+...+...+.+.+.++|++|+||||+|+.+++...
T Consensus 21 k~RP~tldd~vGQe~ii~~~~~L~~~i~~~~~~slLL~GPpGtGKTTLA~aIA~~~~ 77 (725)
T PRK13341 21 RLRPRTLEEFVGQDHILGEGRLLRRAIKADRVGSLILYGPPGVGKTTLARIIANHTR 77 (725)
T ss_pred hcCCCcHHHhcCcHHHhhhhHHHHHHHhcCCCceEEEECCCCCCHHHHHHHHHHHhc
Confidence 334666677899998884 566777777778899999999999999999998754
No 84
>COG2255 RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair]
Probab=98.62 E-value=1.1e-07 Score=72.11 Aligned_cols=55 Identities=22% Similarity=0.276 Sum_probs=46.2
Q ss_pred hcCCCcccccchHHHHHHHHHHhc-----cCCccEEEEEeCCCCcHHHHHHHHHhHHhhh
Q 035585 20 KSNKGYEAFKSRLSTLKSIQDALT-----DVNVNIVGVYGMGGIGKTTLVKEFARQASEE 74 (183)
Q Consensus 20 ~~~~~~~~~~gR~~~l~~l~~~l~-----~~~~~~v~i~G~~G~GKTtL~~~~~~~~~~~ 74 (183)
..|.....|+|.++..+.|.-++. +.....++++||+|.||||||..+++++...
T Consensus 20 lRP~~l~efiGQ~~vk~~L~ifI~AAk~r~e~lDHvLl~GPPGlGKTTLA~IIA~Emgvn 79 (332)
T COG2255 20 LRPKTLDEFIGQEKVKEQLQIFIKAAKKRGEALDHVLLFGPPGLGKTTLAHIIANELGVN 79 (332)
T ss_pred cCcccHHHhcChHHHHHHHHHHHHHHHhcCCCcCeEEeeCCCCCcHHHHHHHHHHHhcCC
Confidence 346777889999988888877665 4566789999999999999999999998765
No 85
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=98.62 E-value=1.6e-07 Score=75.76 Aligned_cols=95 Identities=23% Similarity=0.331 Sum_probs=59.8
Q ss_pred CcccccchHHHHHHHHHHhc----c---------CCccEEEEEeCCCCcHHHHHHHHHhHHhhhhcccceEEEEecCCcC
Q 035585 24 GYEAFKSRLSTLKSIQDALT----D---------VNVNIVGVYGMGGIGKTTLVKEFARQASEEKLFDQVVFSEVSQTPD 90 (183)
Q Consensus 24 ~~~~~~gR~~~l~~l~~~l~----~---------~~~~~v~i~G~~G~GKTtL~~~~~~~~~~~~~~~~~~~~~~~~~~~ 90 (183)
....+.|++++++.+.+.+. . ..+..++|+|++|+|||++|+.+++..... |+.+..
T Consensus 129 ~~~di~Gl~~~~~~l~~~i~~pl~~~~~~~~~g~~~p~gvLL~GppGtGKT~lAkaia~~~~~~-------~i~v~~--- 198 (389)
T PRK03992 129 TYEDIGGLEEQIREVREAVELPLKKPELFEEVGIEPPKGVLLYGPPGTGKTLLAKAVAHETNAT-------FIRVVG--- 198 (389)
T ss_pred CHHHhCCcHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCceEEECCCCCChHHHHHHHHHHhCCC-------EEEeeh---
Confidence 34456789999988888653 1 345679999999999999999999876532 222211
Q ss_pred HHHHHHHHHHHhCCCchhHHHHHHHHHHHHHHhcCCeEEEEEeCCCCc
Q 035585 91 IKKIHGEIAEKLGLEFSEEAESRRASRLYERLKKEKMILVILDNIWKY 138 (183)
Q Consensus 91 ~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~llvlD~~~~~ 138 (183)
. .+...... ........++.......+.+|+|||+|..
T Consensus 199 -~----~l~~~~~g-----~~~~~i~~~f~~a~~~~p~IlfiDEiD~l 236 (389)
T PRK03992 199 -S----ELVQKFIG-----EGARLVRELFELAREKAPSIIFIDEIDAI 236 (389)
T ss_pred -H----HHhHhhcc-----chHHHHHHHHHHHHhcCCeEEEEechhhh
Confidence 1 11111110 11223344555555567889999999865
No 86
>PRK14953 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.61 E-value=6.5e-07 Score=74.12 Aligned_cols=56 Identities=18% Similarity=0.177 Sum_probs=45.8
Q ss_pred hhhhcCCCcccccchHHHHHHHHHHhccCCc-cEEEEEeCCCCcHHHHHHHHHhHHh
Q 035585 17 VWLKSNKGYEAFKSRLSTLKSIQDALTDVNV-NIVGVYGMGGIGKTTLVKEFARQAS 72 (183)
Q Consensus 17 ~~~~~~~~~~~~~gR~~~l~~l~~~l~~~~~-~~v~i~G~~G~GKTtL~~~~~~~~~ 72 (183)
.....|.....++|.+.....|.+++.+.+. +.++++|++|+||||+|+.++..+.
T Consensus 7 ~~kyRP~~f~diiGq~~i~~~L~~~i~~~~i~hayLf~Gp~G~GKTtlAr~lAk~L~ 63 (486)
T PRK14953 7 ARKYRPKFFKEVIGQEIVVRILKNAVKLQRVSHAYIFAGPRGTGKTTIARILAKVLN 63 (486)
T ss_pred HHhhCCCcHHHccChHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhc
Confidence 3444666777889999999999999885544 4578899999999999999988765
No 87
>PRK06893 DNA replication initiation factor; Validated
Probab=98.61 E-value=1.4e-07 Score=70.80 Aligned_cols=39 Identities=15% Similarity=0.231 Sum_probs=30.4
Q ss_pred CccEEEEEeCCCCcHHHHHHHHHhHHhhhhcccceEEEEec
Q 035585 46 NVNIVGVYGMGGIGKTTLVKEFARQASEEKLFDQVVFSEVS 86 (183)
Q Consensus 46 ~~~~v~i~G~~G~GKTtL~~~~~~~~~~~~~~~~~~~~~~~ 86 (183)
..+.+.|+|++|+|||+|+..+++....+ ...+.|+.+.
T Consensus 38 ~~~~l~l~G~~G~GKThL~~ai~~~~~~~--~~~~~y~~~~ 76 (229)
T PRK06893 38 QQPFFYIWGGKSSGKSHLLKAVSNHYLLN--QRTAIYIPLS 76 (229)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHHHHc--CCCeEEeeHH
Confidence 34678999999999999999999987654 3345666653
No 88
>PRK07133 DNA polymerase III subunits gamma and tau; Validated
Probab=98.61 E-value=5.2e-07 Score=77.23 Aligned_cols=58 Identities=16% Similarity=0.182 Sum_probs=47.5
Q ss_pred hhhhhcCCCcccccchHHHHHHHHHHhccCC-ccEEEEEeCCCCcHHHHHHHHHhHHhh
Q 035585 16 EVWLKSNKGYEAFKSRLSTLKSIQDALTDVN-VNIVGVYGMGGIGKTTLVKEFARQASE 73 (183)
Q Consensus 16 ~~~~~~~~~~~~~~gR~~~l~~l~~~l~~~~-~~~v~i~G~~G~GKTtL~~~~~~~~~~ 73 (183)
......|.....++|.+.....|.+++...+ .+.++++||+|+|||++|+.++..+-.
T Consensus 8 l~~KyRP~~f~dIiGQe~~v~~L~~aI~~~rl~HAYLF~GP~GtGKTt~AriLAk~LnC 66 (725)
T PRK07133 8 LYRKYRPKTFDDIVGQDHIVQTLKNIIKSNKISHAYLFSGPRGTGKTSVAKIFANALNC 66 (725)
T ss_pred HHHHhCCCCHHHhcCcHHHHHHHHHHHHcCCCCeEEEEECCCCCcHHHHHHHHHHHhcc
Confidence 4445567778889999999999999887544 466799999999999999999887643
No 89
>PRK11331 5-methylcytosine-specific restriction enzyme subunit McrB; Provisional
Probab=98.60 E-value=1.8e-07 Score=75.89 Aligned_cols=108 Identities=20% Similarity=0.230 Sum_probs=67.9
Q ss_pred ccccchHHHHHHHHHHhccCCccEEEEEeCCCCcHHHHHHHHHhHHhhhhcccceEEEEecCCcCHHHHHHHHHHHhCCC
Q 035585 26 EAFKSRLSTLKSIQDALTDVNVNIVGVYGMGGIGKTTLVKEFARQASEEKLFDQVVFSEVSQTPDIKKIHGEIAEKLGLE 105 (183)
Q Consensus 26 ~~~~gR~~~l~~l~~~l~~~~~~~v~i~G~~G~GKTtL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~ 105 (183)
..++..+..++.+...+.. ...+.++|++|+|||++|+.+++.+.....+..+.|+.+....+...+...+.-. ...
T Consensus 175 ~d~~i~e~~le~l~~~L~~--~~~iil~GppGtGKT~lA~~la~~l~~~~~~~~v~~VtFHpsySYeDFI~G~rP~-~vg 251 (459)
T PRK11331 175 NDLFIPETTIETILKRLTI--KKNIILQGPPGVGKTFVARRLAYLLTGEKAPQRVNMVQFHQSYSYEDFIQGYRPN-GVG 251 (459)
T ss_pred hcccCCHHHHHHHHHHHhc--CCCEEEECCCCCCHHHHHHHHHHHhcCCcccceeeEEeecccccHHHHhcccCCC-CCC
Confidence 3466778888888888853 4688889999999999999999888654445567777877766655443322100 000
Q ss_pred chhHHHHHHHHHHHHHHhc--CCeEEEEEeCCCCc
Q 035585 106 FSEEAESRRASRLYERLKK--EKMILVILDNIWKY 138 (183)
Q Consensus 106 ~~~~~~~~~~~~~~~~~~~--~~~~llvlD~~~~~ 138 (183)
. ......+..+...... .++.+|||||++..
T Consensus 252 y--~~~~G~f~~~~~~A~~~p~~~~vliIDEINRa 284 (459)
T PRK11331 252 F--RRKDGIFYNFCQQAKEQPEKKYVFIIDEINRA 284 (459)
T ss_pred e--EecCchHHHHHHHHHhcccCCcEEEEehhhcc
Confidence 0 0000112222222221 46899999998744
No 90
>PRK14954 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.60 E-value=5.4e-07 Score=76.39 Aligned_cols=55 Identities=22% Similarity=0.261 Sum_probs=45.8
Q ss_pred hhcCCCcccccchHHHHHHHHHHhccCCc-cEEEEEeCCCCcHHHHHHHHHhHHhh
Q 035585 19 LKSNKGYEAFKSRLSTLKSIQDALTDVNV-NIVGVYGMGGIGKTTLVKEFARQASE 73 (183)
Q Consensus 19 ~~~~~~~~~~~gR~~~l~~l~~~l~~~~~-~~v~i~G~~G~GKTtL~~~~~~~~~~ 73 (183)
...|.....++|.+.....|.+.+.+++. +.++++|++|+||||+|+.++..+..
T Consensus 9 kyRP~~f~eivGQe~i~~~L~~~i~~~ri~ha~Lf~Gp~GvGKttlA~~lAk~L~c 64 (620)
T PRK14954 9 KYRPSKFADITAQEHITHTIQNSLRMDRVGHGYIFSGLRGVGKTTAARVFAKAVNC 64 (620)
T ss_pred HHCCCCHHHhcCcHHHHHHHHHHHHcCCCCeeEEEECCCCCCHHHHHHHHHHHhCC
Confidence 34566777889999999999998876555 55899999999999999999988754
No 91
>PRK14950 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.60 E-value=5.4e-07 Score=76.34 Aligned_cols=140 Identities=12% Similarity=0.191 Sum_probs=79.5
Q ss_pred hhcCCCcccccchHHHHHHHHHHhccCCc-cEEEEEeCCCCcHHHHHHHHHhHHhhhhcccceEEEEecCCcCHHHHHHH
Q 035585 19 LKSNKGYEAFKSRLSTLKSIQDALTDVNV-NIVGVYGMGGIGKTTLVKEFARQASEEKLFDQVVFSEVSQTPDIKKIHGE 97 (183)
Q Consensus 19 ~~~~~~~~~~~gR~~~l~~l~~~l~~~~~-~~v~i~G~~G~GKTtL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 97 (183)
...|.....++|.+.....|.+++.+.+. +.++++|++|+||||+++.++..+........ ......-..++.
T Consensus 9 kyRP~~~~eiiGq~~~~~~L~~~i~~~~i~~a~Lf~Gp~G~GKTtlA~~lA~~l~c~~~~~~------~~~c~~c~~c~~ 82 (585)
T PRK14950 9 KWRSQTFAELVGQEHVVQTLRNAIAEGRVAHAYLFTGPRGVGKTSTARILAKAVNCTTNDPK------GRPCGTCEMCRA 82 (585)
T ss_pred HhCCCCHHHhcCCHHHHHHHHHHHHhCCCceEEEEECCCCCCHHHHHHHHHHHhcCCCCCCC------CCCCccCHHHHH
Confidence 34566777889999999999988875443 56799999999999999999987753211000 000011112222
Q ss_pred HHHHhCCCch-----hHHHHHHHHHHHHHHh----cCCeEEEEEeCCCCcc--cccccCcCCCCCCCCcEEEEEecCh
Q 035585 98 IAEKLGLEFS-----EEAESRRASRLYERLK----KEKMILVILDNIWKYL--DLETVGIPFGDDHRGCKLLLTARDC 164 (183)
Q Consensus 98 i~~~l~~~~~-----~~~~~~~~~~~~~~~~----~~~~~llvlD~~~~~~--~~~~l~~~~~~~~~~~~iiitsr~~ 164 (183)
+......... .....+.+..+.+.+. ..++.++||||++.+. ..+.|+..+......+.+|+++.+.
T Consensus 83 i~~~~~~d~~~i~~~~~~~vd~ir~ii~~~~~~p~~~~~kVvIIDEa~~L~~~a~naLLk~LEepp~~tv~Il~t~~~ 160 (585)
T PRK14950 83 IAEGSAVDVIEMDAASHTSVDDAREIIERVQFRPALARYKVYIIDEVHMLSTAAFNALLKTLEEPPPHAIFILATTEV 160 (585)
T ss_pred HhcCCCCeEEEEeccccCCHHHHHHHHHHHhhCcccCCeEEEEEeChHhCCHHHHHHHHHHHhcCCCCeEEEEEeCCh
Confidence 2221111100 0001111222222221 2567899999998773 3555655555555667777766543
No 92
>PF13177 DNA_pol3_delta2: DNA polymerase III, delta subunit; PDB: 1NJF_B 3GLG_G 1XXH_I 1NJG_A 3GLF_B 3GLI_G 1IQP_E 2GNO_A 1SXJ_E 1A5T_A ....
Probab=98.59 E-value=7.2e-07 Score=63.44 Aligned_cols=123 Identities=14% Similarity=0.185 Sum_probs=74.6
Q ss_pred chHHHHHHHHHHhccCCc-cEEEEEeCCCCcHHHHHHHHHhHHhhhhcc------------------cceEEEEecCCcC
Q 035585 30 SRLSTLKSIQDALTDVNV-NIVGVYGMGGIGKTTLVKEFARQASEEKLF------------------DQVVFSEVSQTPD 90 (183)
Q Consensus 30 gR~~~l~~l~~~l~~~~~-~~v~i~G~~G~GKTtL~~~~~~~~~~~~~~------------------~~~~~~~~~~~~~ 90 (183)
|-++..+.|.+.+.+.+. +.++++|+.|+||+++|..++..+-..... ..+.++.......
T Consensus 1 gq~~~~~~L~~~~~~~~l~ha~L~~G~~g~gk~~~a~~~a~~ll~~~~~~~~c~~c~~c~~~~~~~~~d~~~~~~~~~~~ 80 (162)
T PF13177_consen 1 GQEEIIELLKNLIKSGRLPHALLFHGPSGSGKKTLALAFARALLCSNPNEDPCGECRSCRRIEEGNHPDFIIIKPDKKKK 80 (162)
T ss_dssp S-HHHHHHHHHHHHCTC--SEEEEECSTTSSHHHHHHHHHHHHC-TT-CTT--SSSHHHHHHHTT-CTTEEEEETTTSSS
T ss_pred CcHHHHHHHHHHHHcCCcceeEEEECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCHHHHHHHhccCcceEEEecccccc
Confidence 446677778887775544 568999999999999999999877443221 1133332222100
Q ss_pred HHHHHHHHHHHhCCCchhHHHHHHHHHHHHHHh----cCCeEEEEEeCCCCcc--cccccCcCCCCCCCCcEEEEEecCh
Q 035585 91 IKKIHGEIAEKLGLEFSEEAESRRASRLYERLK----KEKMILVILDNIWKYL--DLETVGIPFGDDHRGCKLLLTARDC 164 (183)
Q Consensus 91 ~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~----~~~~~llvlD~~~~~~--~~~~l~~~~~~~~~~~~iiitsr~~ 164 (183)
.-..+.+..+...+. ..+.-++|||+++.+. ..+.|+..+.....++.+|++|.+.
T Consensus 81 ------------------~i~i~~ir~i~~~~~~~~~~~~~KviiI~~ad~l~~~a~NaLLK~LEepp~~~~fiL~t~~~ 142 (162)
T PF13177_consen 81 ------------------SIKIDQIREIIEFLSLSPSEGKYKVIIIDEADKLTEEAQNALLKTLEEPPENTYFILITNNP 142 (162)
T ss_dssp ------------------SBSHHHHHHHHHHCTSS-TTSSSEEEEEETGGGS-HHHHHHHHHHHHSTTTTEEEEEEES-G
T ss_pred ------------------hhhHHHHHHHHHHHHHHHhcCCceEEEeehHhhhhHHHHHHHHHHhcCCCCCEEEEEEECCh
Confidence 001122223333331 2578899999999773 5777777777777889999888877
Q ss_pred H-HHhhc
Q 035585 165 N-VLLNM 170 (183)
Q Consensus 165 ~-~~~~~ 170 (183)
+ ++..+
T Consensus 143 ~~il~TI 149 (162)
T PF13177_consen 143 SKILPTI 149 (162)
T ss_dssp GGS-HHH
T ss_pred HHChHHH
Confidence 6 34433
No 93
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=98.59 E-value=1.3e-07 Score=68.18 Aligned_cols=107 Identities=23% Similarity=0.223 Sum_probs=60.7
Q ss_pred CCccEEEEEeCCCCcHHHHHHHHHhHHhhhhcccceEE-----EEecCCcCHHHHHHHHHHHhCCCchhHHHHHH-HHHH
Q 035585 45 VNVNIVGVYGMGGIGKTTLVKEFARQASEEKLFDQVVF-----SEVSQTPDIKKIHGEIAEKLGLEFSEEAESRR-ASRL 118 (183)
Q Consensus 45 ~~~~~v~i~G~~G~GKTtL~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~-~~~~ 118 (183)
.+...++|.|++|+|||||++.+....... -..+.| ....+... .+..+. ...+
T Consensus 23 ~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~--~G~i~~~g~~i~~~~q~~~------------------LSgGq~qrv~l 82 (177)
T cd03222 23 KEGEVIGIVGPNGTGKTTAVKILAGQLIPN--GDNDEWDGITPVYKPQYID------------------LSGGELQRVAI 82 (177)
T ss_pred CCCCEEEEECCCCChHHHHHHHHHcCCCCC--CcEEEECCEEEEEEcccCC------------------CCHHHHHHHHH
Confidence 345799999999999999999998876542 111221 01112111 111222 2223
Q ss_pred HHHHhcCCeEEEEEeCCCCccccc---ccCcCCCC-CCC-CcEEEEEecChHHHhhcCC
Q 035585 119 YERLKKEKMILVILDNIWKYLDLE---TVGIPFGD-DHR-GCKLLLTARDCNVLLNMSL 172 (183)
Q Consensus 119 ~~~~~~~~~~llvlD~~~~~~~~~---~l~~~~~~-~~~-~~~iiitsr~~~~~~~~~~ 172 (183)
...+. .++-++++||.....+.. .+...+.. ... +..++++||+...+..+..
T Consensus 83 aral~-~~p~lllLDEPts~LD~~~~~~l~~~l~~~~~~~~~tiiivsH~~~~~~~~~d 140 (177)
T cd03222 83 AAALL-RNATFYLFDEPSAYLDIEQRLNAARAIRRLSEEGKKTALVVEHDLAVLDYLSD 140 (177)
T ss_pred HHHHh-cCCCEEEEECCcccCCHHHHHHHHHHHHHHHHcCCCEEEEEECCHHHHHHhCC
Confidence 33333 678999999987554321 11122211 122 3579999999988775544
No 94
>PRK14965 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.58 E-value=4.8e-07 Score=76.45 Aligned_cols=55 Identities=16% Similarity=0.254 Sum_probs=45.5
Q ss_pred hhcCCCcccccchHHHHHHHHHHhccCCc-cEEEEEeCCCCcHHHHHHHHHhHHhh
Q 035585 19 LKSNKGYEAFKSRLSTLKSIQDALTDVNV-NIVGVYGMGGIGKTTLVKEFARQASE 73 (183)
Q Consensus 19 ~~~~~~~~~~~gR~~~l~~l~~~l~~~~~-~~v~i~G~~G~GKTtL~~~~~~~~~~ 73 (183)
...|.....++|.+.....|.+++.+.+. +.++++|++|+||||+++.++..+..
T Consensus 9 k~RP~~f~~iiGq~~v~~~L~~~i~~~~~~hayLf~Gp~G~GKtt~A~~lak~l~c 64 (576)
T PRK14965 9 KYRPQTFSDLTGQEHVSRTLQNAIDTGRVAHAFLFTGARGVGKTSTARILAKALNC 64 (576)
T ss_pred HhCCCCHHHccCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHhhcC
Confidence 34566777899999999999998876554 56799999999999999999988753
No 95
>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]
Probab=98.58 E-value=2e-07 Score=70.52 Aligned_cols=61 Identities=15% Similarity=0.129 Sum_probs=39.5
Q ss_pred HHHHHHHhcCCeEEEEEeCCCCcccccccCc---CCC--CCCCCcEEEEEecChHHHhhcCCCCcc
Q 035585 116 SRLYERLKKEKMILVILDNIWKYLDLETVGI---PFG--DDHRGCKLLLTARDCNVLLNMSLCRSE 176 (183)
Q Consensus 116 ~~~~~~~~~~~~~llvlD~~~~~~~~~~l~~---~~~--~~~~~~~iiitsr~~~~~~~~~~~~~~ 176 (183)
.-++.....+++-+|++||..+..++..... .+. ....|..+|++.||.+++.+...+.+.
T Consensus 146 rv~iArALaQ~~~iLLLDEPTs~LDi~~Q~evl~ll~~l~~~~~~tvv~vlHDlN~A~ryad~~i~ 211 (258)
T COG1120 146 RVLIARALAQETPILLLDEPTSHLDIAHQIEVLELLRDLNREKGLTVVMVLHDLNLAARYADHLIL 211 (258)
T ss_pred HHHHHHHHhcCCCEEEeCCCccccCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEE
Confidence 3344444458899999999876644322211 111 123477899999999999987775443
No 96
>TIGR03689 pup_AAA proteasome ATPase. In the Actinobacteria, as shown for Mycobacterium tuberculosis, some proteins are modified by ligation between an epsilon-amino group of a lysine side chain and the C-terminal carboxylate of the ubiquitin-like protein Pup. This modification leads to protein degradation by the archaeal-like proteasome found in the Actinobacteria. Members of this protein family belong to the AAA family of ATPases and tend to be clustered with the genes for Pup, the Pup ligase PafA, and structural components of the proteasome. This protein forms hexameric rings with ATPase activity.
Probab=98.58 E-value=3.8e-07 Score=75.49 Aligned_cols=53 Identities=26% Similarity=0.306 Sum_probs=40.4
Q ss_pred CCCcccccchHHHHHHHHHHhc-------------cCCccEEEEEeCCCCcHHHHHHHHHhHHhhh
Q 035585 22 NKGYEAFKSRLSTLKSIQDALT-------------DVNVNIVGVYGMGGIGKTTLVKEFARQASEE 74 (183)
Q Consensus 22 ~~~~~~~~gR~~~l~~l~~~l~-------------~~~~~~v~i~G~~G~GKTtL~~~~~~~~~~~ 74 (183)
.....++.|.+.+++.+.+.+. -..++-++|+||+|+|||++++.+++.+...
T Consensus 178 ~v~~~dIgGl~~~i~~i~~~v~lp~~~~~l~~~~gl~~p~GILLyGPPGTGKT~LAKAlA~eL~~~ 243 (512)
T TIGR03689 178 DVTYADIGGLDSQIEQIRDAVELPFLHPELYREYDLKPPKGVLLYGPPGCGKTLIAKAVANSLAQR 243 (512)
T ss_pred CCCHHHcCChHHHHHHHHHHHHHHhhCHHHHHhccCCCCcceEEECCCCCcHHHHHHHHHHhhccc
Confidence 3344556678888888877643 1245679999999999999999999987653
No 97
>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.
Probab=98.57 E-value=2e-07 Score=67.38 Aligned_cols=125 Identities=22% Similarity=0.237 Sum_probs=67.0
Q ss_pred CccEEEEEeCCCCcHHHHHHHHHhHHhhhhcccceEEEEecC--CcCHHH------HHHHHHHHhCCC------chhHHH
Q 035585 46 NVNIVGVYGMGGIGKTTLVKEFARQASEEKLFDQVVFSEVSQ--TPDIKK------IHGEIAEKLGLE------FSEEAE 111 (183)
Q Consensus 46 ~~~~v~i~G~~G~GKTtL~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~------~~~~i~~~l~~~------~~~~~~ 111 (183)
+...++|.|++|+|||||++.+...... ..+.++++-.. ...... ...++++.++.. ....+.
T Consensus 24 ~G~~~~l~G~nGsGKStLl~~i~G~~~~---~~G~v~~~g~~~~~~~~~~~~~~i~~~~q~l~~~gl~~~~~~~~~~LS~ 100 (180)
T cd03214 24 AGEIVGILGPNGAGKSTLLKTLAGLLKP---SSGEILLDGKDLASLSPKELARKIAYVPQALELLGLAHLADRPFNELSG 100 (180)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCC---CCcEEEECCEECCcCCHHHHHHHHhHHHHHHHHcCCHhHhcCCcccCCH
Confidence 4578999999999999999999886543 23333332111 111111 111234444322 111122
Q ss_pred HHHHHHHHHHHhcCCeEEEEEeCCCCccc---ccccCcCCCCC-CC-CcEEEEEecChHHHhhcCCC
Q 035585 112 SRRASRLYERLKKEKMILVILDNIWKYLD---LETVGIPFGDD-HR-GCKLLLTARDCNVLLNMSLC 173 (183)
Q Consensus 112 ~~~~~~~~~~~~~~~~~llvlD~~~~~~~---~~~l~~~~~~~-~~-~~~iiitsr~~~~~~~~~~~ 173 (183)
.+.....+.......+-++++||.....+ ...+...+... .. +..+|++||+.+.+..+...
T Consensus 101 G~~qrl~laral~~~p~llllDEP~~~LD~~~~~~~~~~l~~~~~~~~~tiii~sh~~~~~~~~~d~ 167 (180)
T cd03214 101 GERQRVLLARALAQEPPILLLDEPTSHLDIAHQIELLELLRRLARERGKTVVMVLHDLNLAARYADR 167 (180)
T ss_pred HHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCE
Confidence 22222222222237889999999875533 22222222221 22 66899999999887655443
No 98
>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt
Probab=98.57 E-value=2.4e-07 Score=66.12 Aligned_cols=120 Identities=17% Similarity=0.138 Sum_probs=63.4
Q ss_pred CccEEEEEeCCCCcHHHHHHHHHhHHhhhh---ccc---ceEEEEecCCcCHHHHHHHHHHHhCC-CchhHHHHHHHH-H
Q 035585 46 NVNIVGVYGMGGIGKTTLVKEFARQASEEK---LFD---QVVFSEVSQTPDIKKIHGEIAEKLGL-EFSEEAESRRAS-R 117 (183)
Q Consensus 46 ~~~~v~i~G~~G~GKTtL~~~~~~~~~~~~---~~~---~~~~~~~~~~~~~~~~~~~i~~~l~~-~~~~~~~~~~~~-~ 117 (183)
+...++|.|++|+|||||++.+...+.... .+. .+.| +++..... ...+.+.+.. .....+..+... .
T Consensus 26 ~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~~~~~i~~--~~q~~~~~--~~tv~~nl~~~~~~~LS~G~~~rv~ 101 (166)
T cd03223 26 PGDRLLITGPSGTGKSSLFRALAGLWPWGSGRIGMPEGEDLLF--LPQRPYLP--LGTLREQLIYPWDDVLSGGEQQRLA 101 (166)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCCceEEE--ECCCCccc--cccHHHHhhccCCCCCCHHHHHHHH
Confidence 457899999999999999999988765321 011 1222 22222111 1122222211 111122222222 2
Q ss_pred HHHHHhcCCeEEEEEeCCCCcccc---cccCcCCCCCCCCcEEEEEecChHHHhhcCCC
Q 035585 118 LYERLKKEKMILVILDNIWKYLDL---ETVGIPFGDDHRGCKLLLTARDCNVLLNMSLC 173 (183)
Q Consensus 118 ~~~~~~~~~~~llvlD~~~~~~~~---~~l~~~~~~~~~~~~iiitsr~~~~~~~~~~~ 173 (183)
+...+. .++-++++||.....+. ..+...+... +..+|++||+..+.. ...+
T Consensus 102 laral~-~~p~~lllDEPt~~LD~~~~~~l~~~l~~~--~~tiiivsh~~~~~~-~~d~ 156 (166)
T cd03223 102 FARLLL-HKPKFVFLDEATSALDEESEDRLYQLLKEL--GITVISVGHRPSLWK-FHDR 156 (166)
T ss_pred HHHHHH-cCCCEEEEECCccccCHHHHHHHHHHHHHh--CCEEEEEeCChhHHh-hCCE
Confidence 333333 78899999998755432 2221222221 457999999988654 4443
No 99
>PRK06305 DNA polymerase III subunits gamma and tau; Validated
Probab=98.57 E-value=7.8e-07 Score=73.08 Aligned_cols=54 Identities=20% Similarity=0.260 Sum_probs=45.3
Q ss_pred hcCCCcccccchHHHHHHHHHHhccCCc-cEEEEEeCCCCcHHHHHHHHHhHHhh
Q 035585 20 KSNKGYEAFKSRLSTLKSIQDALTDVNV-NIVGVYGMGGIGKTTLVKEFARQASE 73 (183)
Q Consensus 20 ~~~~~~~~~~gR~~~l~~l~~~l~~~~~-~~v~i~G~~G~GKTtL~~~~~~~~~~ 73 (183)
..|.....++|.+..+..|.+++...+. +.++++|++|+|||++|+.++..+..
T Consensus 11 yRP~~~~diiGq~~~v~~L~~~i~~~~i~ha~Lf~Gp~G~GKtt~A~~lAk~l~c 65 (451)
T PRK06305 11 YRPQTFSEILGQDAVVAVLKNALRFNRAAHAYLFSGIRGTGKTTLARIFAKALNC 65 (451)
T ss_pred hCCCCHHHhcCcHHHHHHHHHHHHcCCCceEEEEEcCCCCCHHHHHHHHHHHhcC
Confidence 3456777889999999999999875554 66889999999999999999988754
No 100
>PRK08451 DNA polymerase III subunits gamma and tau; Validated
Probab=98.55 E-value=7.6e-07 Score=74.13 Aligned_cols=125 Identities=18% Similarity=0.217 Sum_probs=78.3
Q ss_pred hhcCCCcccccchHHHHHHHHHHhccCCcc-EEEEEeCCCCcHHHHHHHHHhHHhhhhccc-------------------
Q 035585 19 LKSNKGYEAFKSRLSTLKSIQDALTDVNVN-IVGVYGMGGIGKTTLVKEFARQASEEKLFD------------------- 78 (183)
Q Consensus 19 ~~~~~~~~~~~gR~~~l~~l~~~l~~~~~~-~v~i~G~~G~GKTtL~~~~~~~~~~~~~~~------------------- 78 (183)
...|.....++|-+.....|...+.+.+.+ .++++|++|+||||+|+.++..+-......
T Consensus 7 KyRP~~fdeiiGqe~v~~~L~~~I~~grl~hayLf~Gp~G~GKTt~Ar~LAk~L~c~~~~~~~pC~~C~~C~~~~~~~h~ 86 (535)
T PRK08451 7 KYRPKHFDELIGQESVSKTLSLALDNNRLAHAYLFSGLRGSGKTSSARIFARALVCEQGPSSTPCDTCIQCQSALENRHI 86 (535)
T ss_pred HHCCCCHHHccCcHHHHHHHHHHHHcCCCCeeEEEECCCCCcHHHHHHHHHHHhcCCCCCCCCCCcccHHHHHHhhcCCC
Confidence 345567778899999999999988755554 568999999999999999988774321100
Q ss_pred ceEEEEecCCcCHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHH----hcCCeEEEEEeCCCCcc--cccccCcCCCCCC
Q 035585 79 QVVFSEVSQTPDIKKIHGEIAEKLGLEFSEEAESRRASRLYERL----KKEKMILVILDNIWKYL--DLETVGIPFGDDH 152 (183)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~----~~~~~~llvlD~~~~~~--~~~~l~~~~~~~~ 152 (183)
.++.++....... +.++.+.... ...+..++||||++.+. ..+.|+..+....
T Consensus 87 dv~eldaas~~gI---------------------d~IRelie~~~~~P~~~~~KVvIIDEad~Lt~~A~NALLK~LEEpp 145 (535)
T PRK08451 87 DIIEMDAASNRGI---------------------DDIRELIEQTKYKPSMARFKIFIIDEVHMLTKEAFNALLKTLEEPP 145 (535)
T ss_pred eEEEeccccccCH---------------------HHHHHHHHHHhhCcccCCeEEEEEECcccCCHHHHHHHHHHHhhcC
Confidence 0111111111111 1111221111 12567799999998774 3556666666666
Q ss_pred CCcEEEEEecCh
Q 035585 153 RGCKLLLTARDC 164 (183)
Q Consensus 153 ~~~~iiitsr~~ 164 (183)
+.+.+|+++.+.
T Consensus 146 ~~t~FIL~ttd~ 157 (535)
T PRK08451 146 SYVKFILATTDP 157 (535)
T ss_pred CceEEEEEECCh
Confidence 678888888664
No 101
>PRK05563 DNA polymerase III subunits gamma and tau; Validated
Probab=98.55 E-value=9.1e-07 Score=74.53 Aligned_cols=137 Identities=15% Similarity=0.177 Sum_probs=77.2
Q ss_pred hcCCCcccccchHHHHHHHHHHhccCC-ccEEEEEeCCCCcHHHHHHHHHhHHhhhhcccceEEEEecCCcCHHHHHHHH
Q 035585 20 KSNKGYEAFKSRLSTLKSIQDALTDVN-VNIVGVYGMGGIGKTTLVKEFARQASEEKLFDQVVFSEVSQTPDIKKIHGEI 98 (183)
Q Consensus 20 ~~~~~~~~~~gR~~~l~~l~~~l~~~~-~~~v~i~G~~G~GKTtL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 98 (183)
..|.....++|.+.....|.+++.+.+ .+.++++|++|+|||++|+.++..+......... .|.. -..+..+
T Consensus 10 ~rP~~f~~viGq~~v~~~L~~~i~~~~~~hayLf~Gp~GtGKTt~Ak~lAkal~c~~~~~~~---pC~~----C~~C~~i 82 (559)
T PRK05563 10 WRPQTFEDVVGQEHITKTLKNAIKQGKISHAYLFSGPRGTGKTSAAKIFAKAVNCLNPPDGE---PCNE----CEICKAI 82 (559)
T ss_pred hCCCcHHhccCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCC---CCCc----cHHHHHH
Confidence 356677788999999999999987543 4668889999999999999998876532110000 0000 0011111
Q ss_pred HHHhCCCchh-----HHHHHHHHHHHHHHh----cCCeEEEEEeCCCCcc--cccccCcCCCCCCCCcEEEEEecC
Q 035585 99 AEKLGLEFSE-----EAESRRASRLYERLK----KEKMILVILDNIWKYL--DLETVGIPFGDDHRGCKLLLTARD 163 (183)
Q Consensus 99 ~~~l~~~~~~-----~~~~~~~~~~~~~~~----~~~~~llvlD~~~~~~--~~~~l~~~~~~~~~~~~iiitsr~ 163 (183)
.......... ....+.++.+..... ..+..++||||++.+. .++.|+..+......+.+|++|..
T Consensus 83 ~~g~~~dv~eidaas~~~vd~ir~i~~~v~~~p~~~~~kViIIDE~~~Lt~~a~naLLKtLEepp~~~ifIlatt~ 158 (559)
T PRK05563 83 TNGSLMDVIEIDAASNNGVDEIRDIRDKVKYAPSEAKYKVYIIDEVHMLSTGAFNALLKTLEEPPAHVIFILATTE 158 (559)
T ss_pred hcCCCCCeEEeeccccCCHHHHHHHHHHHhhCcccCCeEEEEEECcccCCHHHHHHHHHHhcCCCCCeEEEEEeCC
Confidence 1100000000 001112222332221 3567899999999773 455665555555556666665543
No 102
>KOG0062 consensus ATPase component of ABC transporters with duplicated ATPase domains/Translation elongation factor EF-3b [Amino acid transport and metabolism; Translation, ribosomal structure and biogenesis]
Probab=98.55 E-value=8e-08 Score=78.09 Aligned_cols=131 Identities=23% Similarity=0.192 Sum_probs=72.2
Q ss_pred CccEEEEEeCCCCcHHHHHHHHHhHHhhhhccc-ce--EEEEe-----cCCc----------------CHHHHHHHHHHH
Q 035585 46 NVNIVGVYGMGGIGKTTLVKEFARQASEEKLFD-QV--VFSEV-----SQTP----------------DIKKIHGEIAEK 101 (183)
Q Consensus 46 ~~~~v~i~G~~G~GKTtL~~~~~~~~~~~~~~~-~~--~~~~~-----~~~~----------------~~~~~~~~i~~~ 101 (183)
..+-.+|+|++|+|||||++++.+..-..-+.. .+ .++.. ..+. ...++...++..
T Consensus 105 ~GrRYGLvGrNG~GKsTLLRaia~~~v~~f~veqE~~g~~t~~~~~~l~~D~~~~dfl~~e~~l~~~~~l~ei~~~~L~g 184 (582)
T KOG0062|consen 105 RGRRYGLVGRNGIGKSTLLRAIANGQVSGFHVEQEVRGDDTEALQSVLESDTERLDFLAEEKELLAGLTLEEIYDKILAG 184 (582)
T ss_pred cccccceeCCCCCcHHHHHHHHHhcCcCccCchhheeccchHHHhhhhhccHHHHHHHHhhhhhhccchHHHHHHHHHHh
Confidence 345688999999999999999998221110000 00 11100 0111 112223323333
Q ss_pred hCCCch-------hH-HHHHHHHHHHHHHhcCCeEEEEEeCCCCcccccccCcCC--CCCCCCcEEEEEecChHHHhhcC
Q 035585 102 LGLEFS-------EE-AESRRASRLYERLKKEKMILVILDNIWKYLDLETVGIPF--GDDHRGCKLLLTARDCNVLLNMS 171 (183)
Q Consensus 102 l~~~~~-------~~-~~~~~~~~~~~~~~~~~~~llvlD~~~~~~~~~~l~~~~--~~~~~~~~iiitsr~~~~~~~~~ 171 (183)
++-... .. ..+.+...+...+. .++=||+|||..++.++..+.+.- ....+ ..+||+|||+.++..+.
T Consensus 185 lGFt~emq~~pt~slSGGWrMrlaLARAlf-~~pDlLLLDEPTNhLDv~av~WLe~yL~t~~-~T~liVSHDr~FLn~V~ 262 (582)
T KOG0062|consen 185 LGFTPEMQLQPTKSLSGGWRMRLALARALF-AKPDLLLLDEPTNHLDVVAVAWLENYLQTWK-ITSLIVSHDRNFLNTVC 262 (582)
T ss_pred CCCCHHHHhccccccCcchhhHHHHHHHHh-cCCCEEeecCCcccchhHHHHHHHHHHhhCC-ceEEEEeccHHHHHHHH
Confidence 332110 01 12233333444443 789999999999987754442221 12223 57999999999999888
Q ss_pred CCCcchh
Q 035585 172 LCRSEEE 178 (183)
Q Consensus 172 ~~~~~~~ 178 (183)
+..++-+
T Consensus 263 tdIIH~~ 269 (582)
T KOG0062|consen 263 TDIIHLE 269 (582)
T ss_pred HHHHHHh
Confidence 7666544
No 103
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=98.54 E-value=3.6e-07 Score=79.13 Aligned_cols=101 Identities=19% Similarity=0.343 Sum_probs=64.5
Q ss_pred ccccchHHHHHHHHHHhccCCccEEEEEeCCCCcHHHHHHHHHhHHhhhhc----ccceEEEEecCCcCHHHHHHHHHHH
Q 035585 26 EAFKSRLSTLKSIQDALTDVNVNIVGVYGMGGIGKTTLVKEFARQASEEKL----FDQVVFSEVSQTPDIKKIHGEIAEK 101 (183)
Q Consensus 26 ~~~~gR~~~l~~l~~~l~~~~~~~v~i~G~~G~GKTtL~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~i~~~ 101 (183)
..++||++++..+...|.......++|+|++|+|||++++.++........ ....+| ... . ..+..
T Consensus 186 ~~liGR~~ei~~~i~iL~r~~~~n~LLvGppGvGKT~lae~la~~i~~~~vP~~l~~~~~~-~l~----~----~~lla- 255 (758)
T PRK11034 186 DPLIGREKELERAIQVLCRRRKNNPLLVGESGVGKTAIAEGLAWRIVQGDVPEVMADCTIY-SLD----I----GSLLA- 255 (758)
T ss_pred CcCcCCCHHHHHHHHHHhccCCCCeEEECCCCCCHHHHHHHHHHHHHhcCCCchhcCCeEE-ecc----H----HHHhc-
Confidence 468999999999999998766678899999999999999999887644321 122233 111 1 11110
Q ss_pred hCCCchhHHHHHHHHHHHHHHhcCCeEEEEEeCCCCc
Q 035585 102 LGLEFSEEAESRRASRLYERLKKEKMILVILDNIWKY 138 (183)
Q Consensus 102 l~~~~~~~~~~~~~~~~~~~~~~~~~~llvlD~~~~~ 138 (183)
+....+ .....+..++..+...++.+|+|||++..
T Consensus 256 -G~~~~G-e~e~rl~~l~~~l~~~~~~ILfIDEIh~L 290 (758)
T PRK11034 256 -GTKYRG-DFEKRFKALLKQLEQDTNSILFIDEIHTI 290 (758)
T ss_pred -ccchhh-hHHHHHHHHHHHHHhcCCCEEEeccHHHH
Confidence 111111 22233445555555466789999999854
No 104
>PRK08727 hypothetical protein; Validated
Probab=98.54 E-value=4.4e-07 Score=68.32 Aligned_cols=59 Identities=15% Similarity=0.238 Sum_probs=38.1
Q ss_pred cccccchHH-HHHHHHHHhccCCccEEEEEeCCCCcHHHHHHHHHhHHhhhhcccceEEEEe
Q 035585 25 YEAFKSRLS-TLKSIQDALTDVNVNIVGVYGMGGIGKTTLVKEFARQASEEKLFDQVVFSEV 85 (183)
Q Consensus 25 ~~~~~gR~~-~l~~l~~~l~~~~~~~v~i~G~~G~GKTtL~~~~~~~~~~~~~~~~~~~~~~ 85 (183)
..+|++... .+..+.....+.....+.|+|++|+|||+|+..+++..... ...+.|+.+
T Consensus 18 f~~f~~~~~n~~~~~~~~~~~~~~~~l~l~G~~G~GKThL~~a~~~~~~~~--~~~~~y~~~ 77 (233)
T PRK08727 18 FDSYIAAPDGLLAQLQALAAGQSSDWLYLSGPAGTGKTHLALALCAAAEQA--GRSSAYLPL 77 (233)
T ss_pred hhhccCCcHHHHHHHHHHHhccCCCeEEEECCCCCCHHHHHHHHHHHHHHc--CCcEEEEeH
Confidence 344544333 33333333334444679999999999999999999887665 234566553
No 105
>TIGR00602 rad24 checkpoint protein rad24. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=98.54 E-value=4.6e-07 Score=76.85 Aligned_cols=60 Identities=15% Similarity=0.153 Sum_probs=49.4
Q ss_pred chhhhhhcCCCcccccchHHHHHHHHHHhcc-----CCccEEEEEeCCCCcHHHHHHHHHhHHhh
Q 035585 14 AEEVWLKSNKGYEAFKSRLSTLKSIQDALTD-----VNVNIVGVYGMGGIGKTTLVKEFARQASE 73 (183)
Q Consensus 14 ~~~~~~~~~~~~~~~~gR~~~l~~l~~~l~~-----~~~~~v~i~G~~G~GKTtL~~~~~~~~~~ 73 (183)
.++.....|.....+++.+..++.+..++.. ...++++|+|++|+||||+++.++..+..
T Consensus 72 ~pW~eKyrP~~ldel~~~~~ki~~l~~~l~~~~~~~~~~~illL~GP~GsGKTTl~~~la~~l~~ 136 (637)
T TIGR00602 72 EPWVEKYKPETQHELAVHKKKIEEVETWLKAQVLENAPKRILLITGPSGCGKSTTIKILSKELGI 136 (637)
T ss_pred CchHHHhCCCCHHHhcCcHHHHHHHHHHHHhcccccCCCcEEEEECCCCCCHHHHHHHHHHHhhh
Confidence 4466667888889999999999999988863 23456999999999999999999987654
No 106
>PRK10536 hypothetical protein; Provisional
Probab=98.54 E-value=9.4e-07 Score=66.86 Aligned_cols=137 Identities=11% Similarity=0.104 Sum_probs=74.7
Q ss_pred CCcccccchHHHHHHHHHHhccCCccEEEEEeCCCCcHHHHHHHHHhHHh-hhhcccceEEEEecC-----------C--
Q 035585 23 KGYEAFKSRLSTLKSIQDALTDVNVNIVGVYGMGGIGKTTLVKEFARQAS-EEKLFDQVVFSEVSQ-----------T-- 88 (183)
Q Consensus 23 ~~~~~~~gR~~~l~~l~~~l~~~~~~~v~i~G~~G~GKTtL~~~~~~~~~-~~~~~~~~~~~~~~~-----------~-- 88 (183)
.+...+.+|...+..+..++.+ ..++.++|+.|+|||+|+..+..+.- .. .+..++..+..- +
T Consensus 52 ~~~~~i~p~n~~Q~~~l~al~~--~~lV~i~G~aGTGKT~La~a~a~~~l~~~-~~~kIiI~RP~v~~ge~LGfLPG~~~ 128 (262)
T PRK10536 52 RDTSPILARNEAQAHYLKAIES--KQLIFATGEAGCGKTWISAAKAAEALIHK-DVDRIIVTRPVLQADEDLGFLPGDIA 128 (262)
T ss_pred cCCccccCCCHHHHHHHHHHhc--CCeEEEECCCCCCHHHHHHHHHHHHHhcC-CeeEEEEeCCCCCchhhhCcCCCCHH
Confidence 3345567788899888888865 35999999999999999999887532 22 233333321110 0
Q ss_pred cCHHHHHHHHHHHhCCCchhHHHHHHHH--------HHHHHHhcCCe---EEEEEeCCCCcccccccCcCCCCCCCCcEE
Q 035585 89 PDIKKIHGEIAEKLGLEFSEEAESRRAS--------RLYERLKKEKM---ILVILDNIWKYLDLETVGIPFGDDHRGCKL 157 (183)
Q Consensus 89 ~~~~~~~~~i~~~l~~~~~~~~~~~~~~--------~~~~~~~~~~~---~llvlD~~~~~~~~~~l~~~~~~~~~~~~i 157 (183)
....-.+.-+.+.+..-........... .-..+++ +.. -+||+||++++.. ..+...+.....+|++
T Consensus 129 eK~~p~~~pi~D~L~~~~~~~~~~~~~~~~~~~Iei~~l~ymR-Grtl~~~~vIvDEaqn~~~-~~~k~~ltR~g~~sk~ 206 (262)
T PRK10536 129 EKFAPYFRPVYDVLVRRLGASFMQYCLRPEIGKVEIAPFAYMR-GRTFENAVVILDEAQNVTA-AQMKMFLTRLGENVTV 206 (262)
T ss_pred HHHHHHHHHHHHHHHHHhChHHHHHHHHhccCcEEEecHHHhc-CCcccCCEEEEechhcCCH-HHHHHHHhhcCCCCEE
Confidence 0112223333333321111111000000 0122333 333 4999999998753 3333344455678998
Q ss_pred EEEecCh
Q 035585 158 LLTARDC 164 (183)
Q Consensus 158 iitsr~~ 164 (183)
|++--..
T Consensus 207 v~~GD~~ 213 (262)
T PRK10536 207 IVNGDIT 213 (262)
T ss_pred EEeCChh
Confidence 8876543
No 107
>KOG0734 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=98.52 E-value=4.6e-07 Score=74.22 Aligned_cols=97 Identities=22% Similarity=0.243 Sum_probs=66.0
Q ss_pred CCCcccccchHHHHHHHHHHhccC---------CccEEEEEeCCCCcHHHHHHHHHhHHhhhhcccceEEEEecCCcCHH
Q 035585 22 NKGYEAFKSRLSTLKSIQDALTDV---------NVNIVGVYGMGGIGKTTLVKEFARQASEEKLFDQVVFSEVSQTPDIK 92 (183)
Q Consensus 22 ~~~~~~~~gR~~~l~~l~~~l~~~---------~~~~v~i~G~~G~GKTtL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 92 (183)
-.+..++..-++|++.+.++|.++ =+.-|+++||||+|||.||++++.+.... |+.++.. .+.
T Consensus 303 F~dVkG~DEAK~ELeEiVefLkdP~kftrLGGKLPKGVLLvGPPGTGKTlLARAvAGEA~VP-------FF~~sGS-EFd 374 (752)
T KOG0734|consen 303 FEDVKGVDEAKQELEEIVEFLKDPTKFTRLGGKLPKGVLLVGPPGTGKTLLARAVAGEAGVP-------FFYASGS-EFD 374 (752)
T ss_pred cccccChHHHHHHHHHHHHHhcCcHHhhhccCcCCCceEEeCCCCCchhHHHHHhhcccCCC-------eEecccc-chh
Confidence 356667777889999999998742 23459999999999999999998865433 2223221 222
Q ss_pred HHHHHHHHHhCCCchhHHHHHHHHHHHHHHhcCCeEEEEEeCCCCc
Q 035585 93 KIHGEIAEKLGLEFSEEAESRRASRLYERLKKEKMILVILDNIWKY 138 (183)
Q Consensus 93 ~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~llvlD~~~~~ 138 (183)
+++- . .....++.++...+.+-+.+|+|||+|..
T Consensus 375 Em~V--------G----vGArRVRdLF~aAk~~APcIIFIDEiDav 408 (752)
T KOG0734|consen 375 EMFV--------G----VGARRVRDLFAAAKARAPCIIFIDEIDAV 408 (752)
T ss_pred hhhh--------c----ccHHHHHHHHHHHHhcCCeEEEEechhhh
Confidence 2111 1 12234566777777789999999999854
No 108
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=98.51 E-value=5e-07 Score=63.45 Aligned_cols=38 Identities=29% Similarity=0.441 Sum_probs=30.3
Q ss_pred EEEEeCCCCcHHHHHHHHHhHHhhhhcccceEEEEecCCc
Q 035585 50 VGVYGMGGIGKTTLVKEFARQASEEKLFDQVVFSEVSQTP 89 (183)
Q Consensus 50 v~i~G~~G~GKTtL~~~~~~~~~~~~~~~~~~~~~~~~~~ 89 (183)
++|+|++|+|||+++..++...... ...++|+......
T Consensus 2 ~~i~G~~G~GKT~l~~~i~~~~~~~--~~~v~~~~~e~~~ 39 (165)
T cd01120 2 ILVFGPTGSGKTTLALQLALNIATK--GGKVVYVDIEEEI 39 (165)
T ss_pred eeEeCCCCCCHHHHHHHHHHHHHhc--CCEEEEEECCcch
Confidence 6899999999999999999887653 4457787776543
No 109
>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.
Probab=98.51 E-value=4.5e-07 Score=65.40 Aligned_cols=115 Identities=16% Similarity=0.138 Sum_probs=60.1
Q ss_pred CccEEEEEeCCCCcHHHHHHHHHhHHhhhhcccceEEEE-----------------ecCCcCHHHHHHHHHHHhCCCchh
Q 035585 46 NVNIVGVYGMGGIGKTTLVKEFARQASEEKLFDQVVFSE-----------------VSQTPDIKKIHGEIAEKLGLEFSE 108 (183)
Q Consensus 46 ~~~~v~i~G~~G~GKTtL~~~~~~~~~~~~~~~~~~~~~-----------------~~~~~~~~~~~~~i~~~l~~~~~~ 108 (183)
+...++|.|++|+|||||++.+....... .+.++++ +++...... ..+.+.+ ...
T Consensus 27 ~Ge~~~i~G~nGsGKStLl~~l~G~~~~~---~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~--~tv~~~i---~~~ 98 (178)
T cd03247 27 QGEKIALLGRSGSGKSTLLQLLTGDLKPQ---QGEITLDGVPVSDLEKALSSLISVLNQRPYLFD--TTLRNNL---GRR 98 (178)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhccCCCC---CCEEEECCEEHHHHHHHHHhhEEEEccCCeeec--ccHHHhh---ccc
Confidence 44789999999999999999998765432 1111211 111111100 0111111 011
Q ss_pred HHHHHHHH-HHHHHHhcCCeEEEEEeCCCCccccc---ccCcCCCCCCCCcEEEEEecChHHHhh
Q 035585 109 EAESRRAS-RLYERLKKEKMILVILDNIWKYLDLE---TVGIPFGDDHRGCKLLLTARDCNVLLN 169 (183)
Q Consensus 109 ~~~~~~~~-~~~~~~~~~~~~llvlD~~~~~~~~~---~l~~~~~~~~~~~~iiitsr~~~~~~~ 169 (183)
.+..+... .+...+. .++-++++||.....+.. .+...+.....+..+|++||+...+..
T Consensus 99 LS~G~~qrv~laral~-~~p~~lllDEP~~~LD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~~ 162 (178)
T cd03247 99 FSGGERQRLALARILL-QDAPIVLLDEPTVGLDPITERQLLSLIFEVLKDKTLIWITHHLTGIEH 162 (178)
T ss_pred CCHHHHHHHHHHHHHh-cCCCEEEEECCcccCCHHHHHHHHHHHHHHcCCCEEEEEecCHHHHHh
Confidence 11122222 2223333 788999999987554321 111222111236679999999988763
No 110
>COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning]
Probab=98.50 E-value=3.8e-07 Score=65.56 Aligned_cols=50 Identities=14% Similarity=0.126 Sum_probs=35.1
Q ss_pred CCeEEEEEeCCC----CcccccccCcCCCCCCCCcEEEEEecChHHHhhcCCCC
Q 035585 125 EKMILVILDNIW----KYLDLETVGIPFGDDHRGCKLLLTARDCNVLLNMSLCR 174 (183)
Q Consensus 125 ~~~~llvlD~~~----~~~~~~~l~~~~~~~~~~~~iiitsr~~~~~~~~~~~~ 174 (183)
+++-+|+-||.. ...+|+-+...-.-+..|+.|+++|||.+++..+.-..
T Consensus 154 ~~P~vLlADEPTGNLDp~~s~~im~lfeeinr~GtTVl~ATHd~~lv~~~~~rv 207 (223)
T COG2884 154 NQPAVLLADEPTGNLDPDLSWEIMRLFEEINRLGTTVLMATHDLELVNRMRHRV 207 (223)
T ss_pred cCCCeEeecCCCCCCChHHHHHHHHHHHHHhhcCcEEEEEeccHHHHHhccCcE
Confidence 889999999864 33344444222234566999999999999998775443
No 111
>PRK14971 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.50 E-value=1.4e-06 Score=74.13 Aligned_cols=57 Identities=18% Similarity=0.268 Sum_probs=46.8
Q ss_pred hhhhhcCCCcccccchHHHHHHHHHHhccCCc-cEEEEEeCCCCcHHHHHHHHHhHHh
Q 035585 16 EVWLKSNKGYEAFKSRLSTLKSIQDALTDVNV-NIVGVYGMGGIGKTTLVKEFARQAS 72 (183)
Q Consensus 16 ~~~~~~~~~~~~~~gR~~~l~~l~~~l~~~~~-~~v~i~G~~G~GKTtL~~~~~~~~~ 72 (183)
......|.....++|.+...+.|.+++.+.+. +.++++|+.|+||||+|+.+...+.
T Consensus 7 ~~~kyRP~~f~~viGq~~~~~~L~~~i~~~~l~hayLf~Gp~G~GKtt~A~~lAk~l~ 64 (614)
T PRK14971 7 SARKYRPSTFESVVGQEALTTTLKNAIATNKLAHAYLFCGPRGVGKTTCARIFAKTIN 64 (614)
T ss_pred HHHHHCCCCHHHhcCcHHHHHHHHHHHHcCCCCeeEEEECCCCCCHHHHHHHHHHHhC
Confidence 44455667778899999999999999886554 5589999999999999999888764
No 112
>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.50 E-value=3.4e-07 Score=65.64 Aligned_cols=113 Identities=20% Similarity=0.234 Sum_probs=60.5
Q ss_pred CCccEEEEEeCCCCcHHHHHHHHHhHHhhhhcccceEEEEe------------------cCCcCHHHHHHHHHHHhCCCc
Q 035585 45 VNVNIVGVYGMGGIGKTTLVKEFARQASEEKLFDQVVFSEV------------------SQTPDIKKIHGEIAEKLGLEF 106 (183)
Q Consensus 45 ~~~~~v~i~G~~G~GKTtL~~~~~~~~~~~~~~~~~~~~~~------------------~~~~~~~~~~~~i~~~l~~~~ 106 (183)
.+...++|.|++|+|||||++.++...... .+.++++- .+...... ..+.+.+
T Consensus 26 ~~G~~~~l~G~nGsGKstLl~~i~G~~~~~---~G~i~~~g~~~~~~~~~~~~~~i~~~~~~~~~~~--~t~~e~l---- 96 (171)
T cd03228 26 KPGEKVAIVGPSGSGKSTLLKLLLRLYDPT---SGEILIDGVDLRDLDLESLRKNIAYVPQDPFLFS--GTIRENI---- 96 (171)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHcCCCCC---CCEEEECCEEhhhcCHHHHHhhEEEEcCCchhcc--chHHHHh----
Confidence 345789999999999999999998876432 22222211 11110000 0111111
Q ss_pred hhHHHHHHH-HHHHHHHhcCCeEEEEEeCCCCccc---ccccCcCCCCCCCCcEEEEEecChHHHhh
Q 035585 107 SEEAESRRA-SRLYERLKKEKMILVILDNIWKYLD---LETVGIPFGDDHRGCKLLLTARDCNVLLN 169 (183)
Q Consensus 107 ~~~~~~~~~-~~~~~~~~~~~~~llvlD~~~~~~~---~~~l~~~~~~~~~~~~iiitsr~~~~~~~ 169 (183)
.+..+.. -.+...+. .++-++++||.....+ ...+...+.....+..+|++||+.+.+..
T Consensus 97 --LS~G~~~rl~la~al~-~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~~ 160 (171)
T cd03228 97 --LSGGQRQRIAIARALL-RDPPILILDEATSALDPETEALILEALRALAKGKTVIVIAHRLSTIRD 160 (171)
T ss_pred --hCHHHHHHHHHHHHHh-cCCCEEEEECCCcCCCHHHHHHHHHHHHHhcCCCEEEEEecCHHHHHh
Confidence 1111111 12223333 6788999999875533 22222222222235679999999988765
No 113
>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=98.50 E-value=1.9e-07 Score=66.44 Aligned_cols=121 Identities=13% Similarity=0.134 Sum_probs=64.3
Q ss_pred CccEEEEEeCCCCcHHHHHHHHHhHHhhhhcccceEEEEecCCc--CHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHHh
Q 035585 46 NVNIVGVYGMGGIGKTTLVKEFARQASEEKLFDQVVFSEVSQTP--DIKKIHGEIAEKLGLEFSEEAESRRASRLYERLK 123 (183)
Q Consensus 46 ~~~~v~i~G~~G~GKTtL~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~ 123 (183)
+...++|.|++|+|||||++.+...... ..+.++++-.... ..... ....++. .+.-+..+.....+....
T Consensus 25 ~Ge~~~l~G~nGsGKSTLl~~i~G~~~~---~~G~v~~~g~~~~~~~~~~~---~~~~i~~-~~qLS~G~~qrl~laral 97 (163)
T cd03216 25 RGEVHALLGENGAGKSTLMKILSGLYKP---DSGEILVDGKEVSFASPRDA---RRAGIAM-VYQLSVGERQMVEIARAL 97 (163)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCC---CCeEEEECCEECCcCCHHHH---HhcCeEE-EEecCHHHHHHHHHHHHH
Confidence 4578999999999999999999877653 2333333221111 11111 1111111 111222222222222222
Q ss_pred cCCeEEEEEeCCCCcccc---cccCcCCCC-CCCCcEEEEEecChHHHhhcCCC
Q 035585 124 KEKMILVILDNIWKYLDL---ETVGIPFGD-DHRGCKLLLTARDCNVLLNMSLC 173 (183)
Q Consensus 124 ~~~~~llvlD~~~~~~~~---~~l~~~~~~-~~~~~~iiitsr~~~~~~~~~~~ 173 (183)
..++-++++||.....+. ..+...+.. ...+..+|++||+...+......
T Consensus 98 ~~~p~illlDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~~~~~~d~ 151 (163)
T cd03216 98 ARNARLLILDEPTAALTPAEVERLFKVIRRLRAQGVAVIFISHRLDEVFEIADR 151 (163)
T ss_pred hcCCCEEEEECCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCE
Confidence 378899999998755432 122122211 12366799999999876655443
No 114
>KOG0927 consensus Predicted transporter (ABC superfamily) [General function prediction only]
Probab=98.49 E-value=2.9e-07 Score=75.33 Aligned_cols=125 Identities=20% Similarity=0.241 Sum_probs=78.6
Q ss_pred CccEEEEEeCCCCcHHHHHHHHHhHHhhhhc----ccceEEE---------------------EecCCcCHHHHHHHHHH
Q 035585 46 NVNIVGVYGMGGIGKTTLVKEFARQASEEKL----FDQVVFS---------------------EVSQTPDIKKIHGEIAE 100 (183)
Q Consensus 46 ~~~~v~i~G~~G~GKTtL~~~~~~~~~~~~~----~~~~~~~---------------------~~~~~~~~~~~~~~i~~ 100 (183)
.-..++++||+|+|||||.+.++..+....- -.+..+. ..-.+....+.++.++.
T Consensus 415 ~~srvAlVGPNG~GKsTLlKl~~gdl~p~~G~vs~~~H~~~~~y~Qh~~e~ldl~~s~le~~~~~~~~~~~~e~~r~ilg 494 (614)
T KOG0927|consen 415 LDSRVALVGPNGAGKSTLLKLITGDLQPTIGMVSRHSHNKLPRYNQHLAEQLDLDKSSLEFMMPKFPDEKELEEMRSILG 494 (614)
T ss_pred cccceeEecCCCCchhhhHHHHhhccccccccccccccccchhhhhhhHhhcCcchhHHHHHHHhccccchHHHHHHHHH
Confidence 3357899999999999999998866543210 0011111 01111234556677777
Q ss_pred HhCCCchh-------HHHHHHHHHHHHHHhcCCeEEEEEeCCCCcccccccC--cCCCCCCCCcEEEEEecChHHHhhcC
Q 035585 101 KLGLEFSE-------EAESRRASRLYERLKKEKMILVILDNIWKYLDLETVG--IPFGDDHRGCKLLLTARDCNVLLNMS 171 (183)
Q Consensus 101 ~l~~~~~~-------~~~~~~~~~~~~~~~~~~~~llvlD~~~~~~~~~~l~--~~~~~~~~~~~iiitsr~~~~~~~~~ 171 (183)
+++..... .+......-++..+.-.++.+|||||..++.+.+.+. ....+..+|. +|++|||..++..+.
T Consensus 495 rfgLtgd~q~~p~~~LS~Gqr~rVlFa~l~~kqP~lLlLDEPtnhLDi~tid~laeaiNe~~Gg-vv~vSHDfrlI~qVa 573 (614)
T KOG0927|consen 495 RFGLTGDAQVVPMSQLSDGQRRRVLFARLAVKQPHLLLLDEPTNHLDIETIDALAEAINEFPGG-VVLVSHDFRLISQVA 573 (614)
T ss_pred HhCCCccccccchhhcccccchhHHHHHHHhcCCcEEEecCCCcCCCchhHHHHHHHHhccCCc-eeeeechhhHHHHHH
Confidence 77655322 2333334455566666899999999999887765552 2333555675 899999999887553
No 115
>CHL00181 cbbX CbbX; Provisional
Probab=98.49 E-value=1.8e-06 Score=66.97 Aligned_cols=26 Identities=27% Similarity=0.262 Sum_probs=22.8
Q ss_pred cEEEEEeCCCCcHHHHHHHHHhHHhh
Q 035585 48 NIVGVYGMGGIGKTTLVKEFARQASE 73 (183)
Q Consensus 48 ~~v~i~G~~G~GKTtL~~~~~~~~~~ 73 (183)
..++++|++|+|||++|+.++..+..
T Consensus 60 ~~ill~G~pGtGKT~lAr~la~~~~~ 85 (287)
T CHL00181 60 LHMSFTGSPGTGKTTVALKMADILYK 85 (287)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHHHH
Confidence 45899999999999999999887654
No 116
>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.48 E-value=7.4e-07 Score=64.00 Aligned_cols=115 Identities=19% Similarity=0.201 Sum_probs=62.0
Q ss_pred CccEEEEEeCCCCcHHHHHHHHHhHHhhhhcccceEEEE-----------------ecCCcCH---HHHHHHHHHHhCCC
Q 035585 46 NVNIVGVYGMGGIGKTTLVKEFARQASEEKLFDQVVFSE-----------------VSQTPDI---KKIHGEIAEKLGLE 105 (183)
Q Consensus 46 ~~~~v~i~G~~G~GKTtL~~~~~~~~~~~~~~~~~~~~~-----------------~~~~~~~---~~~~~~i~~~l~~~ 105 (183)
+...++|.|++|+|||||++.+....... .+.++++ +++.... ..+...+.
T Consensus 25 ~Ge~~~i~G~nGsGKStLl~~l~G~~~~~---~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~~~------ 95 (173)
T cd03230 25 KGEIYGLLGPNGAGKTTLIKIILGLLKPD---SGEIKVLGKDIKKEPEEVKRRIGYLPEEPSLYENLTVRENLK------ 95 (173)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCCCCC---CeEEEECCEEcccchHhhhccEEEEecCCccccCCcHHHHhh------
Confidence 45789999999999999999998765431 1222221 1111100 01111111
Q ss_pred chhHHHHHHHH-HHHHHHhcCCeEEEEEeCCCCcccc---cccCcCCCC-CCCCcEEEEEecChHHHhhcCCC
Q 035585 106 FSEEAESRRAS-RLYERLKKEKMILVILDNIWKYLDL---ETVGIPFGD-DHRGCKLLLTARDCNVLLNMSLC 173 (183)
Q Consensus 106 ~~~~~~~~~~~-~~~~~~~~~~~~llvlD~~~~~~~~---~~l~~~~~~-~~~~~~iiitsr~~~~~~~~~~~ 173 (183)
-+..+... .+...+. .++-++++||.....+. ..+...+.. ...|..+|++||+...+......
T Consensus 96 ---LS~G~~qrv~laral~-~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~g~tiii~th~~~~~~~~~d~ 164 (173)
T cd03230 96 ---LSGGMKQRLALAQALL-HDPELLILDEPTSGLDPESRREFWELLRELKKEGKTILLSSHILEEAERLCDR 164 (173)
T ss_pred ---cCHHHHHHHHHHHHHH-cCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHCCCEEEEECCCHHHHHHhCCE
Confidence 11122222 2223333 78999999998755432 122122211 12367799999999887755443
No 117
>COG4608 AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism]
Probab=98.47 E-value=4.4e-07 Score=68.66 Aligned_cols=124 Identities=20% Similarity=0.205 Sum_probs=73.2
Q ss_pred CccEEEEEeCCCCcHHHHHHHHHhHHhhhhcccceEEEEecC-----CcCHHHHHHHHHHHhCCCchh-------HHHHH
Q 035585 46 NVNIVGVYGMGGIGKTTLVKEFARQASEEKLFDQVVFSEVSQ-----TPDIKKIHGEIAEKLGLEFSE-------EAESR 113 (183)
Q Consensus 46 ~~~~v~i~G~~G~GKTtL~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~i~~~l~~~~~~-------~~~~~ 113 (183)
+..+++|+|++|+||||+++.+....+.. .+.+.| .-.. .....+-...+++..+..... .+...
T Consensus 38 ~ge~~glVGESG~GKSTlgr~i~~L~~pt--~G~i~f-~g~~i~~~~~~~~~~~v~elL~~Vgl~~~~~~ryPhelSGGQ 114 (268)
T COG4608 38 EGETLGLVGESGCGKSTLGRLILGLEEPT--SGEILF-EGKDITKLSKEERRERVLELLEKVGLPEEFLYRYPHELSGGQ 114 (268)
T ss_pred CCCEEEEEecCCCCHHHHHHHHHcCcCCC--CceEEE-cCcchhhcchhHHHHHHHHHHHHhCCCHHHhhcCCcccCchh
Confidence 45789999999999999999999887753 223333 2211 122334445556555532111 11111
Q ss_pred HHHHHHHHHhcCCeEEEEEeCCCCcccc---cccCcCCC--CCCCCcEEEEEecChHHHhhcCC
Q 035585 114 RASRLYERLKKEKMILVILDNIWKYLDL---ETVGIPFG--DDHRGCKLLLTARDCNVLLNMSL 172 (183)
Q Consensus 114 ~~~~~~~~~~~~~~~llvlD~~~~~~~~---~~l~~~~~--~~~~~~~iiitsr~~~~~~~~~~ 172 (183)
..+-.+.+...-++-++|.||.-+..+. ..++..+. ....|...+..|||..++..+..
T Consensus 115 rQRi~IARALal~P~liV~DEpvSaLDvSiqaqIlnLL~dlq~~~~lt~lFIsHDL~vv~~isd 178 (268)
T COG4608 115 RQRIGIARALALNPKLIVADEPVSALDVSVQAQILNLLKDLQEELGLTYLFISHDLSVVRYISD 178 (268)
T ss_pred hhhHHHHHHHhhCCcEEEecCchhhcchhHHHHHHHHHHHHHHHhCCeEEEEEEEHHhhhhhcc
Confidence 1122233333478999999998776543 22222222 22336679999999999886655
No 118
>COG0466 Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones]
Probab=98.46 E-value=7.2e-07 Score=75.25 Aligned_cols=50 Identities=22% Similarity=0.256 Sum_probs=42.9
Q ss_pred cccccchHHHHHHHHHHhc------cCCccEEEEEeCCCCcHHHHHHHHHhHHhhh
Q 035585 25 YEAFKSRLSTLKSIQDALT------DVNVNIVGVYGMGGIGKTTLVKEFARQASEE 74 (183)
Q Consensus 25 ~~~~~gR~~~l~~l~~~l~------~~~~~~v~i~G~~G~GKTtL~~~~~~~~~~~ 74 (183)
..+++|-++.-+++.++|. ....++++++||||+|||+|++.++..+..+
T Consensus 322 d~dHYGLekVKeRIlEyLAV~~l~~~~kGpILcLVGPPGVGKTSLgkSIA~al~Rk 377 (782)
T COG0466 322 DKDHYGLEKVKERILEYLAVQKLTKKLKGPILCLVGPPGVGKTSLGKSIAKALGRK 377 (782)
T ss_pred cccccCchhHHHHHHHHHHHHHHhccCCCcEEEEECCCCCCchhHHHHHHHHhCCC
Confidence 4567888888899998876 4566899999999999999999999988765
No 119
>TIGR02858 spore_III_AA stage III sporulation protein AA. Members of this protein are the stage III sporulation protein AA, encoded by one of several genes in the spoIIIA locus. It seems that this protein is found in a species if and only if that species is capable of endospore formation.
Probab=98.46 E-value=1.5e-06 Score=66.64 Aligned_cols=118 Identities=18% Similarity=0.126 Sum_probs=65.2
Q ss_pred cCCccEEEEEeCCCCcHHHHHHHHHhHHhhhhcccceEEEE---ecCCcCHHHHHHHHHHHhCCCc--h---hHHHHHHH
Q 035585 44 DVNVNIVGVYGMGGIGKTTLVKEFARQASEEKLFDQVVFSE---VSQTPDIKKIHGEIAEKLGLEF--S---EEAESRRA 115 (183)
Q Consensus 44 ~~~~~~v~i~G~~G~GKTtL~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~i~~~l~~~~--~---~~~~~~~~ 115 (183)
+.....++|.|++|+|||||++.++..+... .+.++++ +.......++...+ ..+.... . -.......
T Consensus 108 ~~~~~~~~i~g~~g~GKttl~~~l~~~~~~~---~G~i~~~g~~v~~~d~~~ei~~~~-~~~~q~~~~~r~~v~~~~~k~ 183 (270)
T TIGR02858 108 NNRVLNTLIISPPQCGKTTLLRDLARILSTG---ISQLGLRGKKVGIVDERSEIAGCV-NGVPQHDVGIRTDVLDGCPKA 183 (270)
T ss_pred CCCeeEEEEEcCCCCCHHHHHHHHhCccCCC---CceEEECCEEeecchhHHHHHHHh-cccccccccccccccccchHH
Confidence 3445789999999999999999999887653 1222221 11111112222111 1110000 0 00001112
Q ss_pred HHHHHHHhcCCeEEEEEeCCCCcccccccCcCCCCCCCCcEEEEEecChHHHh
Q 035585 116 SRLYERLKKEKMILVILDNIWKYLDLETVGIPFGDDHRGCKLLLTARDCNVLL 168 (183)
Q Consensus 116 ~~~~~~~~~~~~~llvlD~~~~~~~~~~l~~~~~~~~~~~~iiitsr~~~~~~ 168 (183)
..+...++...+-++++||+.....+..+...+. .|..+|+|+|+..+..
T Consensus 184 ~~~~~~i~~~~P~villDE~~~~e~~~~l~~~~~---~G~~vI~ttH~~~~~~ 233 (270)
T TIGR02858 184 EGMMMLIRSMSPDVIVVDEIGREEDVEALLEALH---AGVSIIATAHGRDVED 233 (270)
T ss_pred HHHHHHHHhCCCCEEEEeCCCcHHHHHHHHHHHh---CCCEEEEEechhHHHH
Confidence 2333344446899999999976655555544432 4778999999887744
No 120
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=98.46 E-value=1.2e-06 Score=72.82 Aligned_cols=92 Identities=21% Similarity=0.252 Sum_probs=62.8
Q ss_pred ccccchHHHHHHHHHHhc------------cCCccEEEEEeCCCCcHHHHHHHHHhHHhhhhcccceEEEEecCCcCHHH
Q 035585 26 EAFKSRLSTLKSIQDALT------------DVNVNIVGVYGMGGIGKTTLVKEFARQASEEKLFDQVVFSEVSQTPDIKK 93 (183)
Q Consensus 26 ~~~~gR~~~l~~l~~~l~------------~~~~~~v~i~G~~G~GKTtL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 93 (183)
..+=|-+..+..|.+++. -.+++-|+++||+|+|||.||+.++.++... |+.++..
T Consensus 190 ~diGG~d~~~~el~~li~~i~~Pe~~~~lGv~PprGvLlHGPPGCGKT~lA~AiAgel~vP-------f~~isAp----- 257 (802)
T KOG0733|consen 190 SDIGGLDKTLAELCELIIHIKHPEVFSSLGVRPPRGVLLHGPPGCGKTSLANAIAGELGVP-------FLSISAP----- 257 (802)
T ss_pred hhccChHHHHHHHHHHHHHhcCchhHhhcCCCCCCceeeeCCCCccHHHHHHHHhhhcCCc-------eEeecch-----
Confidence 344567788888877653 1466789999999999999999999987754 2222211
Q ss_pred HHHHHHHHhCCCchhHHHHHHHHHHHHHHhcCCeEEEEEeCCCC
Q 035585 94 IHGEIAEKLGLEFSEEAESRRASRLYERLKKEKMILVILDNIWK 137 (183)
Q Consensus 94 ~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~llvlD~~~~ 137 (183)
.+...+. ...++.++.++......-+.+++|||+|-
T Consensus 258 ---eivSGvS-----GESEkkiRelF~~A~~~aPcivFiDeIDA 293 (802)
T KOG0733|consen 258 ---EIVSGVS-----GESEKKIRELFDQAKSNAPCIVFIDEIDA 293 (802)
T ss_pred ---hhhcccC-----cccHHHHHHHHHHHhccCCeEEEeecccc
Confidence 1111111 12345567788777778999999999983
No 121
>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=98.45 E-value=4.8e-07 Score=65.16 Aligned_cols=112 Identities=22% Similarity=0.207 Sum_probs=59.5
Q ss_pred CCccEEEEEeCCCCcHHHHHHHHHhHHhhhhccc---------ceEEEEecCCcCHHHHHHHHHHHhCCCch--h-----
Q 035585 45 VNVNIVGVYGMGGIGKTTLVKEFARQASEEKLFD---------QVVFSEVSQTPDIKKIHGEIAEKLGLEFS--E----- 108 (183)
Q Consensus 45 ~~~~~v~i~G~~G~GKTtL~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~i~~~l~~~~~--~----- 108 (183)
.+...++|+|++|+|||||++.+...- ....+. .+.|+ .+ ..+++.++.... .
T Consensus 19 ~~G~~~~l~G~nG~GKSTLl~~il~~~-G~v~~~~~~~~~~~~~~~~~--~q--------~~~l~~~~L~~~~~~~~~~~ 87 (176)
T cd03238 19 PLNVLVVVTGVSGSGKSTLVNEGLYAS-GKARLISFLPKFSRNKLIFI--DQ--------LQFLIDVGLGYLTLGQKLST 87 (176)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhhcC-CcEEECCcccccccccEEEE--hH--------HHHHHHcCCCccccCCCcCc
Confidence 345789999999999999999885311 000000 12221 11 234555543211 1
Q ss_pred HHHHHH-HHHHHHHHhcCC--eEEEEEeCCCCccc---ccccCcCCCC-CCCCcEEEEEecChHHHh
Q 035585 109 EAESRR-ASRLYERLKKEK--MILVILDNIWKYLD---LETVGIPFGD-DHRGCKLLLTARDCNVLL 168 (183)
Q Consensus 109 ~~~~~~-~~~~~~~~~~~~--~~llvlD~~~~~~~---~~~l~~~~~~-~~~~~~iiitsr~~~~~~ 168 (183)
.+.... ...+...+. .+ +-++++||.....+ ...+...+.. ...|..||++||+.+.+.
T Consensus 88 LSgGq~qrl~laral~-~~~~p~llLlDEPt~~LD~~~~~~l~~~l~~~~~~g~tvIivSH~~~~~~ 153 (176)
T cd03238 88 LSGGELQRVKLASELF-SEPPGTLFILDEPSTGLHQQDINQLLEVIKGLIDLGNTVILIEHNLDVLS 153 (176)
T ss_pred CCHHHHHHHHHHHHHh-hCCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHH
Confidence 111222 222233333 56 88999999875533 2222222221 124677999999998765
No 122
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=98.45 E-value=2.1e-06 Score=69.48 Aligned_cols=98 Identities=18% Similarity=0.223 Sum_probs=59.3
Q ss_pred cCCCcccccchHHHHHHHHHHhc-------------cCCccEEEEEeCCCCcHHHHHHHHHhHHhhhhcccceEEEEecC
Q 035585 21 SNKGYEAFKSRLSTLKSIQDALT-------------DVNVNIVGVYGMGGIGKTTLVKEFARQASEEKLFDQVVFSEVSQ 87 (183)
Q Consensus 21 ~~~~~~~~~gR~~~l~~l~~~l~-------------~~~~~~v~i~G~~G~GKTtL~~~~~~~~~~~~~~~~~~~~~~~~ 87 (183)
|.....++.|-+...+.+.+.+. -..++.++|+|++|+|||++++.+++..... ++.+..
T Consensus 140 p~v~~~digGl~~~k~~l~~~v~~pl~~~~~~~~~Gl~~pkgvLL~GppGTGKT~LAkalA~~l~~~-------fi~i~~ 212 (398)
T PTZ00454 140 PDVTYSDIGGLDIQKQEIREAVELPLTCPELYEQIGIDPPRGVLLYGPPGTGKTMLAKAVAHHTTAT-------FIRVVG 212 (398)
T ss_pred CCCCHHHcCCHHHHHHHHHHHHHHHhcCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhcCCC-------EEEEeh
Confidence 33444456777777777776543 1356789999999999999999999875432 111111
Q ss_pred CcCHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHHhcCCeEEEEEeCCCCc
Q 035585 88 TPDIKKIHGEIAEKLGLEFSEEAESRRASRLYERLKKEKMILVILDNIWKY 138 (183)
Q Consensus 88 ~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~llvlD~~~~~ 138 (183)
.. +...... .....+..++.......+.+|+|||++..
T Consensus 213 ----s~----l~~k~~g-----e~~~~lr~lf~~A~~~~P~ILfIDEID~i 250 (398)
T PTZ00454 213 ----SE----FVQKYLG-----EGPRMVRDVFRLARENAPSIIFIDEVDSI 250 (398)
T ss_pred ----HH----HHHHhcc-----hhHHHHHHHHHHHHhcCCeEEEEECHhhh
Confidence 11 1111111 11223445555555578899999998754
No 123
>CHL00176 ftsH cell division protein; Validated
Probab=98.44 E-value=1.2e-06 Score=74.64 Aligned_cols=72 Identities=25% Similarity=0.263 Sum_probs=43.8
Q ss_pred ccEEEEEeCCCCcHHHHHHHHHhHHhhhhcccceEEEEecCCcCHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHHhcCC
Q 035585 47 VNIVGVYGMGGIGKTTLVKEFARQASEEKLFDQVVFSEVSQTPDIKKIHGEIAEKLGLEFSEEAESRRASRLYERLKKEK 126 (183)
Q Consensus 47 ~~~v~i~G~~G~GKTtL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 126 (183)
+..++|+||+|+|||+||+.++...... .+.++++. +..... + .....+..++.......
T Consensus 216 p~gVLL~GPpGTGKT~LAralA~e~~~p-----~i~is~s~------f~~~~~---g------~~~~~vr~lF~~A~~~~ 275 (638)
T CHL00176 216 PKGVLLVGPPGTGKTLLAKAIAGEAEVP-----FFSISGSE------FVEMFV---G------VGAARVRDLFKKAKENS 275 (638)
T ss_pred CceEEEECCCCCCHHHHHHHHHHHhCCC-----eeeccHHH------HHHHhh---h------hhHHHHHHHHHHHhcCC
Confidence 4569999999999999999998765321 22222211 111110 0 01123344555555578
Q ss_pred eEEEEEeCCCCc
Q 035585 127 MILVILDNIWKY 138 (183)
Q Consensus 127 ~~llvlD~~~~~ 138 (183)
+.+|+|||+|..
T Consensus 276 P~ILfIDEID~l 287 (638)
T CHL00176 276 PCIVFIDEIDAV 287 (638)
T ss_pred CcEEEEecchhh
Confidence 899999999754
No 124
>PRK06647 DNA polymerase III subunits gamma and tau; Validated
Probab=98.44 E-value=2.7e-06 Score=71.64 Aligned_cols=139 Identities=10% Similarity=0.186 Sum_probs=78.7
Q ss_pred hhcCCCcccccchHHHHHHHHHHhccCCc-cEEEEEeCCCCcHHHHHHHHHhHHhhhhcccceEEEEecCCcCHHHHHHH
Q 035585 19 LKSNKGYEAFKSRLSTLKSIQDALTDVNV-NIVGVYGMGGIGKTTLVKEFARQASEEKLFDQVVFSEVSQTPDIKKIHGE 97 (183)
Q Consensus 19 ~~~~~~~~~~~gR~~~l~~l~~~l~~~~~-~~v~i~G~~G~GKTtL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 97 (183)
...|.....++|-+.....|.+++.+.+. +.++++|++|+||||+|+.++..+........ . .|...... ..
T Consensus 9 kyRP~~f~diiGqe~iv~~L~~~i~~~~i~hayLf~Gp~G~GKTt~Ar~lAk~L~c~~~~~~--~-pC~~C~~C----~~ 81 (563)
T PRK06647 9 KRRPRDFNSLEGQDFVVETLKHSIESNKIANAYIFSGPRGVGKTSSARAFARCLNCVNGPTP--M-PCGECSSC----KS 81 (563)
T ss_pred HhCCCCHHHccCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHhhccccCCCC--C-CCccchHH----HH
Confidence 34566777889999999999999875444 56899999999999999999988754211000 0 00000000 11
Q ss_pred HHHHhCC-----CchhHHHHHHHHHHHHHH----hcCCeEEEEEeCCCCcc--cccccCcCCCCCCCCcEEEEEecCh
Q 035585 98 IAEKLGL-----EFSEEAESRRASRLYERL----KKEKMILVILDNIWKYL--DLETVGIPFGDDHRGCKLLLTARDC 164 (183)
Q Consensus 98 i~~~l~~-----~~~~~~~~~~~~~~~~~~----~~~~~~llvlD~~~~~~--~~~~l~~~~~~~~~~~~iiitsr~~ 164 (183)
+...-.. ........+.+..+...+ ...+..++||||++.+. .++.++..+......+.+|+++.+.
T Consensus 82 i~~~~~~dv~~idgas~~~vddIr~l~e~~~~~p~~~~~KVvIIDEa~~Ls~~a~naLLK~LEepp~~~vfI~~tte~ 159 (563)
T PRK06647 82 IDNDNSLDVIEIDGASNTSVQDVRQIKEEIMFPPASSRYRVYIIDEVHMLSNSAFNALLKTIEEPPPYIVFIFATTEV 159 (563)
T ss_pred HHcCCCCCeEEecCcccCCHHHHHHHHHHHHhchhcCCCEEEEEEChhhcCHHHHHHHHHhhccCCCCEEEEEecCCh
Confidence 1100000 000000011112222111 23577799999999774 3566666666656677777666543
No 125
>COG1373 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=98.44 E-value=7.3e-07 Score=72.15 Aligned_cols=115 Identities=22% Similarity=0.213 Sum_probs=71.7
Q ss_pred chHHHHHHHHHHhccCCccEEEEEeCCCCcHHHHHHHHHhHHhhhhcccceEEEEecCCcCHHHHHHHHHHHhCCCchhH
Q 035585 30 SRLSTLKSIQDALTDVNVNIVGVYGMGGIGKTTLVKEFARQASEEKLFDQVVFSEVSQTPDIKKIHGEIAEKLGLEFSEE 109 (183)
Q Consensus 30 gR~~~l~~l~~~l~~~~~~~v~i~G~~G~GKTtL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~ 109 (183)
.|..-+..+...+...+. +++|+||.++||||+++.+....... .+|++.........-..+.
T Consensus 21 ~~~~~~~~l~~~~~~~~~-i~~i~GpR~~GKTtll~~l~~~~~~~-----~iy~~~~d~~~~~~~l~d~----------- 83 (398)
T COG1373 21 ERRKLLPRLIKKLDLRPF-IILILGPRQVGKTTLLKLLIKGLLEE-----IIYINFDDLRLDRIELLDL----------- 83 (398)
T ss_pred hHHhhhHHHHhhcccCCc-EEEEECCccccHHHHHHHHHhhCCcc-----eEEEEecchhcchhhHHHH-----------
Confidence 344556666666544433 99999999999999997666654432 4444443322111100111
Q ss_pred HHHHHHHHHHHHHhcCCeEEEEEeCCCCcccccccCcCCCCCCCCcEEEEEecChHHHh
Q 035585 110 AESRRASRLYERLKKEKMILVILDNIWKYLDLETVGIPFGDDHRGCKLLLTARDCNVLL 168 (183)
Q Consensus 110 ~~~~~~~~~~~~~~~~~~~llvlD~~~~~~~~~~l~~~~~~~~~~~~iiitsr~~~~~~ 168 (183)
...+.. ....++..++|||++....|......+-+..+. .+++|+-+..+..
T Consensus 84 -----~~~~~~-~~~~~~~yifLDEIq~v~~W~~~lk~l~d~~~~-~v~itgsss~ll~ 135 (398)
T COG1373 84 -----LRAYIE-LKEREKSYIFLDEIQNVPDWERALKYLYDRGNL-DVLITGSSSSLLS 135 (398)
T ss_pred -----HHHHHH-hhccCCceEEEecccCchhHHHHHHHHHccccc-eEEEECCchhhhc
Confidence 111111 111277899999999999988887777766666 7888887777655
No 126
>PRK08181 transposase; Validated
Probab=98.43 E-value=7.7e-07 Score=68.24 Aligned_cols=75 Identities=19% Similarity=0.193 Sum_probs=46.2
Q ss_pred CccEEEEEeCCCCcHHHHHHHHHhHHhhhhcccceEEEEecCCcCHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHHhcC
Q 035585 46 NVNIVGVYGMGGIGKTTLVKEFARQASEEKLFDQVVFSEVSQTPDIKKIHGEIAEKLGLEFSEEAESRRASRLYERLKKE 125 (183)
Q Consensus 46 ~~~~v~i~G~~G~GKTtL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~ 125 (183)
....+.++|++|+|||.|+..+.+..... ...++|+.+ .++...+...... ......+..+ .
T Consensus 105 ~~~nlll~Gp~GtGKTHLa~Aia~~a~~~--g~~v~f~~~------~~L~~~l~~a~~~--------~~~~~~l~~l--~ 166 (269)
T PRK08181 105 KGANLLLFGPPGGGKSHLAAAIGLALIEN--GWRVLFTRT------TDLVQKLQVARRE--------LQLESAIAKL--D 166 (269)
T ss_pred cCceEEEEecCCCcHHHHHHHHHHHHHHc--CCceeeeeH------HHHHHHHHHHHhC--------CcHHHHHHHH--h
Confidence 34679999999999999999999887654 234556443 3333444322110 1112333344 3
Q ss_pred CeEEEEEeCCCCc
Q 035585 126 KMILVILDNIWKY 138 (183)
Q Consensus 126 ~~~llvlD~~~~~ 138 (183)
+.-+|||||+...
T Consensus 167 ~~dLLIIDDlg~~ 179 (269)
T PRK08181 167 KFDLLILDDLAYV 179 (269)
T ss_pred cCCEEEEeccccc
Confidence 5569999998643
No 127
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=98.43 E-value=2.2e-06 Score=62.85 Aligned_cols=57 Identities=21% Similarity=0.264 Sum_probs=41.2
Q ss_pred ccEEEEEeCCCCcHHHHHHHHHhHHhhhhcccceEEEEecCC-cCHHHHHHHHHHHhCCC
Q 035585 47 VNIVGVYGMGGIGKTTLVKEFARQASEEKLFDQVVFSEVSQT-PDIKKIHGEIAEKLGLE 105 (183)
Q Consensus 47 ~~~v~i~G~~G~GKTtL~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~i~~~l~~~ 105 (183)
+.+++++|++|+||||.+..++.++..+ ...+..+++... ....+.++..++.++.+
T Consensus 1 p~vi~lvGptGvGKTTt~aKLAa~~~~~--~~~v~lis~D~~R~ga~eQL~~~a~~l~vp 58 (196)
T PF00448_consen 1 PKVIALVGPTGVGKTTTIAKLAARLKLK--GKKVALISADTYRIGAVEQLKTYAEILGVP 58 (196)
T ss_dssp SEEEEEEESTTSSHHHHHHHHHHHHHHT--T--EEEEEESTSSTHHHHHHHHHHHHHTEE
T ss_pred CEEEEEECCCCCchHhHHHHHHHHHhhc--cccceeecCCCCCccHHHHHHHHHHHhccc
Confidence 4689999999999999999999888765 445666666544 34455666777777654
No 128
>PRK07399 DNA polymerase III subunit delta'; Validated
Probab=98.42 E-value=2.4e-06 Score=67.05 Aligned_cols=48 Identities=10% Similarity=0.104 Sum_probs=41.4
Q ss_pred ccccchHHHHHHHHHHhccCC-ccEEEEEeCCCCcHHHHHHHHHhHHhh
Q 035585 26 EAFKSRLSTLKSIQDALTDVN-VNIVGVYGMGGIGKTTLVKEFARQASE 73 (183)
Q Consensus 26 ~~~~gR~~~l~~l~~~l~~~~-~~~v~i~G~~G~GKTtL~~~~~~~~~~ 73 (183)
..++|.+...+.+...+.+++ ++.++++|+.|+||+++|..++..+-.
T Consensus 4 ~~iiGq~~~~~~L~~~i~~~rl~ha~Lf~G~~G~Gk~~~A~~~a~~llc 52 (314)
T PRK07399 4 ANLIGQPLAIELLTAAIKQNRIAPAYLFAGPEGVGRKLAALCFIEGLLS 52 (314)
T ss_pred HHhCCHHHHHHHHHHHHHhCCCCceEEEECCCCCCHHHHHHHHHHHHcC
Confidence 467899999999999888665 489999999999999999999887743
No 129
>COG2812 DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair]
Probab=98.42 E-value=2.5e-07 Score=76.25 Aligned_cols=138 Identities=14% Similarity=0.208 Sum_probs=86.1
Q ss_pred hcCCCcccccchHHHHHHHHHHhccCC-ccEEEEEeCCCCcHHHHHHHHHhHHhhhh--cccceEEE--E--ecCCcCHH
Q 035585 20 KSNKGYEAFKSRLSTLKSIQDALTDVN-VNIVGVYGMGGIGKTTLVKEFARQASEEK--LFDQVVFS--E--VSQTPDIK 92 (183)
Q Consensus 20 ~~~~~~~~~~gR~~~l~~l~~~l~~~~-~~~v~i~G~~G~GKTtL~~~~~~~~~~~~--~~~~~~~~--~--~~~~~~~~ 92 (183)
..|.....++|-+-....|.+.+..++ .+..+..|+.|+||||+|+.++..+-... ....+--+ | +..+...+
T Consensus 10 yRP~~F~evvGQe~v~~~L~nal~~~ri~hAYlfsG~RGvGKTt~Ari~AkalNC~~~~~~ePC~~C~~Ck~I~~g~~~D 89 (515)
T COG2812 10 YRPKTFDDVVGQEHVVKTLSNALENGRIAHAYLFSGPRGVGKTTIARILAKALNCENGPTAEPCGKCISCKEINEGSLID 89 (515)
T ss_pred hCcccHHHhcccHHHHHHHHHHHHhCcchhhhhhcCCCCcCchhHHHHHHHHhcCCCCCCCCcchhhhhhHhhhcCCccc
Confidence 445666778999999999999998543 35688999999999999999998775431 11111110 0 00000000
Q ss_pred HHHHHHHHHhCCCchhHHHHHHHHHHHHHHh----cCCeEEEEEeCCCCc--ccccccCcCCCCCCCCcEEEEEecChH
Q 035585 93 KIHGEIAEKLGLEFSEEAESRRASRLYERLK----KEKMILVILDNIWKY--LDLETVGIPFGDDHRGCKLLLTARDCN 165 (183)
Q Consensus 93 ~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~----~~~~~llvlD~~~~~--~~~~~l~~~~~~~~~~~~iiitsr~~~ 165 (183)
-+...-++ ....+.++.+.+... ..+--+.||||+|-+ ..++.|+..+-....+..+|+.|.+..
T Consensus 90 viEiDaAS--------n~gVddiR~i~e~v~y~P~~~ryKVyiIDEvHMLS~~afNALLKTLEEPP~hV~FIlATTe~~ 160 (515)
T COG2812 90 VIEIDAAS--------NTGVDDIREIIEKVNYAPSEGRYKVYIIDEVHMLSKQAFNALLKTLEEPPSHVKFILATTEPQ 160 (515)
T ss_pred chhhhhhh--------ccChHHHHHHHHHhccCCccccceEEEEecHHhhhHHHHHHHhcccccCccCeEEEEecCCcC
Confidence 00001111 111223444444442 366779999999855 468888888877778888888887765
No 130
>cd03283 ABC_MutS-like MutS-like homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form slid
Probab=98.41 E-value=2e-06 Score=63.20 Aligned_cols=110 Identities=18% Similarity=0.253 Sum_probs=58.0
Q ss_pred cEEEEEeCCCCcHHHHHHHHHhHHhhhhcccc------------eEEEEecCCcCHHHHHHHHHHHhCCCchhHHHHHHH
Q 035585 48 NIVGVYGMGGIGKTTLVKEFARQASEEKLFDQ------------VVFSEVSQTPDIKKIHGEIAEKLGLEFSEEAESRRA 115 (183)
Q Consensus 48 ~~v~i~G~~G~GKTtL~~~~~~~~~~~~~~~~------------~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~ 115 (183)
++++|+|++|+|||||++.+.....-. ..+. .++...... .++... ... ...+....
T Consensus 26 ~~~~ltGpNg~GKSTllr~i~~~~~l~-~~G~~v~a~~~~~q~~~l~~~~~~~-------d~l~~~--~s~-~~~e~~~~ 94 (199)
T cd03283 26 NGILITGSNMSGKSTFLRTIGVNVILA-QAGAPVCASSFELPPVKIFTSIRVS-------DDLRDG--ISY-FYAELRRL 94 (199)
T ss_pred cEEEEECCCCCChHHHHHHHHHHHHHH-HcCCEEecCccCcccceEEEeccch-------hccccc--cCh-HHHHHHHH
Confidence 799999999999999999997644211 0110 011111111 111100 000 01111223
Q ss_pred HHHHHHHhcCCeEEEEEeCCCCccc------c-cccCcCCCCCCCCcEEEEEecChHHHhhc
Q 035585 116 SRLYERLKKEKMILVILDNIWKYLD------L-ETVGIPFGDDHRGCKLLLTARDCNVLLNM 170 (183)
Q Consensus 116 ~~~~~~~~~~~~~llvlD~~~~~~~------~-~~l~~~~~~~~~~~~iiitsr~~~~~~~~ 170 (183)
..+++.+...++-++++||.-...+ + ..+...+. ..+..+|++||+.+++...
T Consensus 95 ~~iL~~~~~~~p~llllDEp~~glD~~~~~~l~~~ll~~l~--~~~~tiiivTH~~~~~~~~ 154 (199)
T cd03283 95 KEIVEKAKKGEPVLFLLDEIFKGTNSRERQAASAAVLKFLK--NKNTIGIISTHDLELADLL 154 (199)
T ss_pred HHHHHhccCCCCeEEEEecccCCCCHHHHHHHHHHHHHHHH--HCCCEEEEEcCcHHHHHhh
Confidence 3444444224899999999754322 1 11112222 2367899999999887654
No 131
>COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=98.41 E-value=1.7e-06 Score=64.46 Aligned_cols=51 Identities=22% Similarity=0.172 Sum_probs=33.8
Q ss_pred cCCeEEEEEeCCCCcccc---cccCcCCC--CCCCCcEEEEEecChHHHhhcCCCC
Q 035585 124 KEKMILVILDNIWKYLDL---ETVGIPFG--DDHRGCKLLLTARDCNVLLNMSLCR 174 (183)
Q Consensus 124 ~~~~~llvlD~~~~~~~~---~~l~~~~~--~~~~~~~iiitsr~~~~~~~~~~~~ 174 (183)
..++-+||+||+-+..+. ..+...+. ....+..+++.|||-.++..++...
T Consensus 157 ~~~PklLIlDEptSaLD~siQa~IlnlL~~l~~~~~lt~l~IsHdl~~v~~~cdRi 212 (252)
T COG1124 157 IPEPKLLILDEPTSALDVSVQAQILNLLLELKKERGLTYLFISHDLALVEHMCDRI 212 (252)
T ss_pred ccCCCEEEecCchhhhcHHHHHHHHHHHHHHHHhcCceEEEEeCcHHHHHHHhhhe
Confidence 378899999998765431 11112221 2334667999999999999777654
No 132
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=98.41 E-value=1.3e-06 Score=60.89 Aligned_cols=107 Identities=22% Similarity=0.291 Sum_probs=59.0
Q ss_pred CccEEEEEeCCCCcHHHHHHHHHhHHhhhhcccceEEEEecCCcCHHHHHHHHHHHhCCCchhHHHHH-HHHHHHHHHhc
Q 035585 46 NVNIVGVYGMGGIGKTTLVKEFARQASEEKLFDQVVFSEVSQTPDIKKIHGEIAEKLGLEFSEEAESR-RASRLYERLKK 124 (183)
Q Consensus 46 ~~~~v~i~G~~G~GKTtL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~-~~~~~~~~~~~ 124 (183)
....++|.|++|+|||||++.+....... .+.++++-... +.. .+..+..+ ....+...+.
T Consensus 25 ~Ge~~~i~G~nGsGKStLl~~l~G~~~~~---~G~i~~~~~~~-------------i~~-~~~lS~G~~~rv~laral~- 86 (144)
T cd03221 25 PGDRIGLVGRNGAGKSTLLKLIAGELEPD---EGIVTWGSTVK-------------IGY-FEQLSGGEKMRLALAKLLL- 86 (144)
T ss_pred CCCEEEEECCCCCCHHHHHHHHcCCCCCC---ceEEEECCeEE-------------EEE-EccCCHHHHHHHHHHHHHh-
Confidence 45789999999999999999998876532 22233221000 000 00011111 1122333333
Q ss_pred CCeEEEEEeCCCCccc---ccccCcCCCCCCCCcEEEEEecChHHHhhcCC
Q 035585 125 EKMILVILDNIWKYLD---LETVGIPFGDDHRGCKLLLTARDCNVLLNMSL 172 (183)
Q Consensus 125 ~~~~llvlD~~~~~~~---~~~l~~~~~~~~~~~~iiitsr~~~~~~~~~~ 172 (183)
.++-++++||.....+ ...+...+... +..++++||+.+.+.....
T Consensus 87 ~~p~illlDEP~~~LD~~~~~~l~~~l~~~--~~til~~th~~~~~~~~~d 135 (144)
T cd03221 87 ENPNLLLLDEPTNHLDLESIEALEEALKEY--PGTVILVSHDRYFLDQVAT 135 (144)
T ss_pred cCCCEEEEeCCccCCCHHHHHHHHHHHHHc--CCEEEEEECCHHHHHHhCC
Confidence 6788999999875433 22221222111 2469999999887765543
No 133
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=98.41 E-value=7.9e-07 Score=78.40 Aligned_cols=132 Identities=18% Similarity=0.245 Sum_probs=73.3
Q ss_pred cccccchHHHHHHHHHHhccC---------CccEEEEEeCCCCcHHHHHHHHHhHHhhhhcccceEEEEecCCcCHHHHH
Q 035585 25 YEAFKSRLSTLKSIQDALTDV---------NVNIVGVYGMGGIGKTTLVKEFARQASEEKLFDQVVFSEVSQTPDIKKIH 95 (183)
Q Consensus 25 ~~~~~gR~~~l~~l~~~l~~~---------~~~~v~i~G~~G~GKTtL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 95 (183)
...++|....++.+...+... +...++++||+|+|||++|+.++..+... ....+.++++.-..... .
T Consensus 564 ~~~v~GQ~~av~~v~~~i~~~~~gl~~~~~p~~~~Lf~Gp~GvGKt~lA~~La~~l~~~--~~~~i~~d~s~~~~~~~-~ 640 (852)
T TIGR03346 564 HERVVGQDEAVEAVSDAIRRSRAGLSDPNRPIGSFLFLGPTGVGKTELAKALAEFLFDD--EDAMVRIDMSEYMEKHS-V 640 (852)
T ss_pred hcccCCChHHHHHHHHHHHHHhccCCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHhcCC--CCcEEEEechhhcccch-H
Confidence 345788888888888877521 23568899999999999999999887543 23455566654322111 1
Q ss_pred HHHHHHhCCCchhHHHHHHHHHHHHHHhcCCeEEEEEeCCCCcc--cccccCcCCCC-----------CCCCcEEEEEec
Q 035585 96 GEIAEKLGLEFSEEAESRRASRLYERLKKEKMILVILDNIWKYL--DLETVGIPFGD-----------DHRGCKLLLTAR 162 (183)
Q Consensus 96 ~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~llvlD~~~~~~--~~~~l~~~~~~-----------~~~~~~iiitsr 162 (183)
..+ ++. .++-........+...++.....+|+|||++.+. .+..++..+.. ....+.||+||.
T Consensus 641 ~~l---~g~-~~g~~g~~~~g~l~~~v~~~p~~vlllDeieka~~~v~~~Ll~~l~~g~l~d~~g~~vd~rn~iiI~TSn 716 (852)
T TIGR03346 641 ARL---IGA-PPGYVGYEEGGQLTEAVRRKPYSVVLFDEVEKAHPDVFNVLLQVLDDGRLTDGQGRTVDFRNTVIIMTSN 716 (852)
T ss_pred HHh---cCC-CCCccCcccccHHHHHHHcCCCcEEEEeccccCCHHHHHHHHHHHhcCceecCCCeEEecCCcEEEEeCC
Confidence 111 111 1110000011123333443445699999998662 23333332211 134566777776
Q ss_pred C
Q 035585 163 D 163 (183)
Q Consensus 163 ~ 163 (183)
-
T Consensus 717 ~ 717 (852)
T TIGR03346 717 L 717 (852)
T ss_pred c
Confidence 5
No 134
>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra
Probab=98.41 E-value=7.8e-07 Score=63.87 Aligned_cols=113 Identities=19% Similarity=0.202 Sum_probs=59.6
Q ss_pred CccEEEEEeCCCCcHHHHHHHHHhHHhhhhcccceEEEEecCC--cCHHHHHH--------------HHHHHhCCCchhH
Q 035585 46 NVNIVGVYGMGGIGKTTLVKEFARQASEEKLFDQVVFSEVSQT--PDIKKIHG--------------EIAEKLGLEFSEE 109 (183)
Q Consensus 46 ~~~~v~i~G~~G~GKTtL~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~--------------~i~~~l~~~~~~~ 109 (183)
+...++|.|++|+|||||++.++...... .+.++++-... ........ .+.+.+ .
T Consensus 27 ~Ge~~~i~G~nGsGKStLl~~l~G~~~~~---~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~tv~~~l------L 97 (173)
T cd03246 27 PGESLAIIGPSGSGKSTLARLILGLLRPT---SGRVRLDGADISQWDPNELGDHVGYLPQDDELFSGSIAENI------L 97 (173)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhccCCC---CCeEEECCEEcccCCHHHHHhheEEECCCCccccCcHHHHC------c
Confidence 45789999999999999999998765432 12222111000 00011000 111111 1
Q ss_pred HHHHHHH-HHHHHHhcCCeEEEEEeCCCCcccc---cccCcCCCC-CCCCcEEEEEecChHHHh
Q 035585 110 AESRRAS-RLYERLKKEKMILVILDNIWKYLDL---ETVGIPFGD-DHRGCKLLLTARDCNVLL 168 (183)
Q Consensus 110 ~~~~~~~-~~~~~~~~~~~~llvlD~~~~~~~~---~~l~~~~~~-~~~~~~iiitsr~~~~~~ 168 (183)
+..+... .+...+. .++-++++||.....+. ..+...+.. ...+..+|++||+.+.+.
T Consensus 98 S~G~~qrv~la~al~-~~p~~lllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sh~~~~~~ 160 (173)
T cd03246 98 SGGQRQRLGLARALY-GNPRILVLDEPNSHLDVEGERALNQAIAALKAAGATRIVIAHRPETLA 160 (173)
T ss_pred CHHHHHHHHHHHHHh-cCCCEEEEECCccccCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHH
Confidence 1122222 2233333 77889999998755432 122122211 123677999999998775
No 135
>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX. Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.
Probab=98.40 E-value=3.2e-06 Score=65.51 Aligned_cols=27 Identities=26% Similarity=0.231 Sum_probs=23.3
Q ss_pred cEEEEEeCCCCcHHHHHHHHHhHHhhh
Q 035585 48 NIVGVYGMGGIGKTTLVKEFARQASEE 74 (183)
Q Consensus 48 ~~v~i~G~~G~GKTtL~~~~~~~~~~~ 74 (183)
..++++|++|+|||++|+.++..+...
T Consensus 59 ~~vll~G~pGTGKT~lA~~ia~~l~~~ 85 (284)
T TIGR02880 59 LHMSFTGNPGTGKTTVALRMAQILHRL 85 (284)
T ss_pred ceEEEEcCCCCCHHHHHHHHHHHHHHc
Confidence 368999999999999999998877654
No 136
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=98.40 E-value=2.3e-06 Score=71.20 Aligned_cols=104 Identities=17% Similarity=0.277 Sum_probs=68.3
Q ss_pred CCccEEEEEeCCCCcHHHHHHHHHhHHhhhhcccceEEEEecCCcCHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHHhc
Q 035585 45 VNVNIVGVYGMGGIGKTTLVKEFARQASEEKLFDQVVFSEVSQTPDIKKIHGEIAEKLGLEFSEEAESRRASRLYERLKK 124 (183)
Q Consensus 45 ~~~~~v~i~G~~G~GKTtL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~ 124 (183)
..+.-|++|||+|+|||.||++++++-... |+.+-.. +++.... ...+..+++++.+.+.
T Consensus 543 ~~PsGvLL~GPPGCGKTLlAKAVANEag~N-------FisVKGP----ELlNkYV---------GESErAVR~vFqRAR~ 602 (802)
T KOG0733|consen 543 DAPSGVLLCGPPGCGKTLLAKAVANEAGAN-------FISVKGP----ELLNKYV---------GESERAVRQVFQRARA 602 (802)
T ss_pred CCCCceEEeCCCCccHHHHHHHHhhhccCc-------eEeecCH----HHHHHHh---------hhHHHHHHHHHHHhhc
Confidence 345679999999999999999999987665 2333221 1222221 1234567888888888
Q ss_pred CCeEEEEEeCCCCcc-------------cccccCcCCC--CCCCCcEEEEEecChHHHh
Q 035585 125 EKMILVILDNIWKYL-------------DLETVGIPFG--DDHRGCKLLLTARDCNVLL 168 (183)
Q Consensus 125 ~~~~llvlD~~~~~~-------------~~~~l~~~~~--~~~~~~~iiitsr~~~~~~ 168 (183)
..+.+|+|||+|.+. -+++|+..++ ....|..||-.|....++.
T Consensus 603 saPCVIFFDEiDaL~p~R~~~~s~~s~RvvNqLLtElDGl~~R~gV~viaATNRPDiID 661 (802)
T KOG0733|consen 603 SAPCVIFFDEIDALVPRRSDEGSSVSSRVVNQLLTELDGLEERRGVYVIAATNRPDIID 661 (802)
T ss_pred CCCeEEEecchhhcCcccCCCCchhHHHHHHHHHHHhcccccccceEEEeecCCCcccc
Confidence 899999999998552 1344444443 2445766777666666554
No 137
>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication. DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.
Probab=98.39 E-value=9.2e-07 Score=65.96 Aligned_cols=101 Identities=27% Similarity=0.339 Sum_probs=57.7
Q ss_pred ccEEEEEeCCCCcHHHHHHHHHhHHhhhhcccceEEEEecCCcCHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHHhcCC
Q 035585 47 VNIVGVYGMGGIGKTTLVKEFARQASEEKLFDQVVFSEVSQTPDIKKIHGEIAEKLGLEFSEEAESRRASRLYERLKKEK 126 (183)
Q Consensus 47 ~~~v~i~G~~G~GKTtL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 126 (183)
...+.|+|++|+|||.|++++++.......-..++|+++. ++...+.+.+... ....+.+.+ ..
T Consensus 34 ~~~l~l~G~~G~GKTHLL~Ai~~~~~~~~~~~~v~y~~~~------~f~~~~~~~~~~~--------~~~~~~~~~--~~ 97 (219)
T PF00308_consen 34 YNPLFLYGPSGLGKTHLLQAIANEAQKQHPGKRVVYLSAE------EFIREFADALRDG--------EIEEFKDRL--RS 97 (219)
T ss_dssp SSEEEEEESTTSSHHHHHHHHHHHHHHHCTTS-EEEEEHH------HHHHHHHHHHHTT--------SHHHHHHHH--CT
T ss_pred CCceEEECCCCCCHHHHHHHHHHHHHhccccccceeecHH------HHHHHHHHHHHcc--------cchhhhhhh--hc
Confidence 3468999999999999999999988765233346675443 3444444333221 112333444 45
Q ss_pred eEEEEEeCCCCcccc----cccCcCCCC-CCCCcEEEEEecC
Q 035585 127 MILVILDNIWKYLDL----ETVGIPFGD-DHRGCKLLLTARD 163 (183)
Q Consensus 127 ~~llvlD~~~~~~~~----~~l~~~~~~-~~~~~~iiitsr~ 163 (183)
--+|+|||++....- +.+...++. ...|..+|+|+..
T Consensus 98 ~DlL~iDDi~~l~~~~~~q~~lf~l~n~~~~~~k~li~ts~~ 139 (219)
T PF00308_consen 98 ADLLIIDDIQFLAGKQRTQEELFHLFNRLIESGKQLILTSDR 139 (219)
T ss_dssp SSEEEEETGGGGTTHHHHHHHHHHHHHHHHHTTSEEEEEESS
T ss_pred CCEEEEecchhhcCchHHHHHHHHHHHHHHhhCCeEEEEeCC
Confidence 678888888765321 122222221 1235568888753
No 138
>PF04665 Pox_A32: Poxvirus A32 protein; InterPro: IPR006758 This entry contains uncharacterised proteins belonging to the B354L family which include the pox virus A32 protein. This is thought to be an ATPase involved in viral DNA packaging [].
Probab=98.39 E-value=2.6e-06 Score=64.03 Aligned_cols=36 Identities=28% Similarity=0.397 Sum_probs=28.5
Q ss_pred cEEEEEeCCCCcHHHHHHHHHhHHhhhhcccceEEEEe
Q 035585 48 NIVGVYGMGGIGKTTLVKEFARQASEEKLFDQVVFSEV 85 (183)
Q Consensus 48 ~~v~i~G~~G~GKTtL~~~~~~~~~~~~~~~~~~~~~~ 85 (183)
-.++|.|++|+|||+|++.+...+... |.+++++.-
T Consensus 14 fr~viIG~sGSGKT~li~~lL~~~~~~--f~~I~l~t~ 49 (241)
T PF04665_consen 14 FRMVIIGKSGSGKTTLIKSLLYYLRHK--FDHIFLITP 49 (241)
T ss_pred ceEEEECCCCCCHHHHHHHHHHhhccc--CCEEEEEec
Confidence 357889999999999999999887765 666655533
No 139
>PRK12608 transcription termination factor Rho; Provisional
Probab=98.39 E-value=4.3e-06 Score=66.56 Aligned_cols=103 Identities=11% Similarity=0.131 Sum_probs=64.9
Q ss_pred HHHHHHhc-cCCccEEEEEeCCCCcHHHHHHHHHhHHhhhhcccceEEEEec-CCcCHHHHHHHHHHHhCCCchh---H-
Q 035585 36 KSIQDALT-DVNVNIVGVYGMGGIGKTTLVKEFARQASEEKLFDQVVFSEVS-QTPDIKKIHGEIAEKLGLEFSE---E- 109 (183)
Q Consensus 36 ~~l~~~l~-~~~~~~v~i~G~~G~GKTtL~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~i~~~l~~~~~~---~- 109 (183)
.++.+.+. -.+.+-.+|+|++|+|||||++.+++.+.....-..++|+-+. ......++++.+...+.....+ .
T Consensus 121 ~RvID~l~PiGkGQR~LIvG~pGtGKTTLl~~la~~i~~~~~dv~~vv~lIgER~~EV~df~~~i~~~Vvast~de~~~~ 200 (380)
T PRK12608 121 MRVVDLVAPIGKGQRGLIVAPPRAGKTVLLQQIAAAVAANHPEVHLMVLLIDERPEEVTDMRRSVKGEVYASTFDRPPDE 200 (380)
T ss_pred HhhhhheeecCCCceEEEECCCCCCHHHHHHHHHHHHHhcCCCceEEEEEecCCCCCHHHHHHHHhhhEEeecCCCCHHH
Confidence 34555544 2344677999999999999999999988664112224555554 4467788888887766543211 1
Q ss_pred --HHHHHHHHHHHHH-hcCCeEEEEEeCCCCc
Q 035585 110 --AESRRASRLYERL-KKEKMILVILDNIWKY 138 (183)
Q Consensus 110 --~~~~~~~~~~~~~-~~~~~~llvlD~~~~~ 138 (183)
..........+++ .+++.++||+|++...
T Consensus 201 ~~~v~~~~~~~Ae~f~~~GkdVVLvlDsltr~ 232 (380)
T PRK12608 201 HIRVAELVLERAKRLVEQGKDVVILLDSLTRL 232 (380)
T ss_pred HHHHHHHHHHHHHHHHHcCCCEEEEEeCcHHH
Confidence 1111223333344 3589999999998643
No 140
>cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.38 E-value=6.8e-07 Score=64.49 Aligned_cols=122 Identities=18% Similarity=0.231 Sum_probs=62.6
Q ss_pred CccEEEEEeCCCCcHHHHHHHHHhHHhhhhcccceEEEEecCCcC----HHHHHH---------------HHHHHhCCCc
Q 035585 46 NVNIVGVYGMGGIGKTTLVKEFARQASEEKLFDQVVFSEVSQTPD----IKKIHG---------------EIAEKLGLEF 106 (183)
Q Consensus 46 ~~~~v~i~G~~G~GKTtL~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~---------------~i~~~l~~~~ 106 (183)
+...++|.|++|+|||||++.+...+... .+.++++-..... ...... .+.+.+...
T Consensus 25 ~G~~~~i~G~nGsGKSTLl~~l~G~~~~~---~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~t~~~~l~~~- 100 (178)
T cd03229 25 AGEIVALLGPSGSGKSTLLRCIAGLEEPD---SGSILIDGEDLTDLEDELPPLRRRIGMVFQDFALFPHLTVLENIALG- 100 (178)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCCC---ceEEEECCEEccccchhHHHHhhcEEEEecCCccCCCCCHHHheeec-
Confidence 45789999999999999999998765431 2222221100000 000000 111111100
Q ss_pred hhHHHHHHHH-HHHHHHhcCCeEEEEEeCCCCccccc---ccCcCCCC-CCC-CcEEEEEecChHHHhhcCCCC
Q 035585 107 SEEAESRRAS-RLYERLKKEKMILVILDNIWKYLDLE---TVGIPFGD-DHR-GCKLLLTARDCNVLLNMSLCR 174 (183)
Q Consensus 107 ~~~~~~~~~~-~~~~~~~~~~~~llvlD~~~~~~~~~---~l~~~~~~-~~~-~~~iiitsr~~~~~~~~~~~~ 174 (183)
.+..+... .+...+ ..++-++++||.....+.. .+...+.. ... +..++++||+.+.+..+....
T Consensus 101 --lS~G~~qr~~la~al-~~~p~llilDEP~~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~~~~d~i 171 (178)
T cd03229 101 --LSGGQQQRVALARAL-AMDPDVLLLDEPTSALDPITRREVRALLKSLQAQLGITVVLVTHDLDEAARLADRV 171 (178)
T ss_pred --CCHHHHHHHHHHHHH-HCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEE
Confidence 11112222 222333 3788999999987554322 22222211 122 567999999998887655443
No 141
>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN. Members of this family are the GvpN protein associated with the production of gas vesicles produced in some prokaryotes to give cells buoyancy. This family belongs to a larger family of ATPases (pfam07728).
Probab=98.37 E-value=2.8e-06 Score=65.05 Aligned_cols=53 Identities=23% Similarity=0.193 Sum_probs=34.5
Q ss_pred HHHHHHHHHhccCCccEEEEEeCCCCcHHHHHHHHHhHHhhhhcccceEEEEecCCcCHH
Q 035585 33 STLKSIQDALTDVNVNIVGVYGMGGIGKTTLVKEFARQASEEKLFDQVVFSEVSQTPDIK 92 (183)
Q Consensus 33 ~~l~~l~~~l~~~~~~~v~i~G~~G~GKTtL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 92 (183)
+.++.+..++... ..+.|.|++|+|||++|+.++..+.. ....+++.......
T Consensus 9 ~l~~~~l~~l~~g--~~vLL~G~~GtGKT~lA~~la~~lg~-----~~~~i~~~~~~~~~ 61 (262)
T TIGR02640 9 RVTSRALRYLKSG--YPVHLRGPAGTGKTTLAMHVARKRDR-----PVMLINGDAELTTS 61 (262)
T ss_pred HHHHHHHHHHhcC--CeEEEEcCCCCCHHHHHHHHHHHhCC-----CEEEEeCCccCCHH
Confidence 4445555555432 56789999999999999999875422 34555665544433
No 142
>PRK08903 DnaA regulatory inactivator Hda; Validated
Probab=98.37 E-value=1.5e-06 Score=65.10 Aligned_cols=52 Identities=13% Similarity=0.255 Sum_probs=35.4
Q ss_pred HHHHHHHHhc-cCCccEEEEEeCCCCcHHHHHHHHHhHHhhhhcccceEEEEecC
Q 035585 34 TLKSIQDALT-DVNVNIVGVYGMGGIGKTTLVKEFARQASEEKLFDQVVFSEVSQ 87 (183)
Q Consensus 34 ~l~~l~~~l~-~~~~~~v~i~G~~G~GKTtL~~~~~~~~~~~~~~~~~~~~~~~~ 87 (183)
.+..+.++.. ....+.+.|+|++|+|||+|++.+++..... ...+.++++..
T Consensus 28 ~~~~l~~~~~~~~~~~~~~l~G~~G~GKT~La~ai~~~~~~~--~~~~~~i~~~~ 80 (227)
T PRK08903 28 LVARLRELAAGPVADRFFYLWGEAGSGRSHLLQALVADASYG--GRNARYLDAAS 80 (227)
T ss_pred HHHHHHHHHhccCCCCeEEEECCCCCCHHHHHHHHHHHHHhC--CCcEEEEehHH
Confidence 3344445443 2445789999999999999999999887543 23455655433
No 143
>PF07693 KAP_NTPase: KAP family P-loop domain; InterPro: IPR011646 The KAP (after Kidins220/ARMS and PifA) family of predicted NTPases are sporadically distributed across a wide phylogenetic range in bacteria and in animals. Many of the prokaryotic KAP NTPases are encoded in plasmids and tend to undergo disruption to form pseudogenes. A unique feature of all eukaryotic and certain bacterial KAP NTPases is the presence of two or four transmembrane helices inserted into the P-loop NTPase domain. These transmembrane helices anchor KAP NTPases in the membrane such that the P-loop domain is located on the intracellular side [].
Probab=98.36 E-value=1.1e-05 Score=63.42 Aligned_cols=44 Identities=20% Similarity=0.458 Sum_probs=35.3
Q ss_pred hHHHHHHHHHHhcc---CCccEEEEEeCCCCcHHHHHHHHHhHHhhh
Q 035585 31 RLSTLKSIQDALTD---VNVNIVGVYGMGGIGKTTLVKEFARQASEE 74 (183)
Q Consensus 31 R~~~l~~l~~~l~~---~~~~~v~i~G~~G~GKTtL~~~~~~~~~~~ 74 (183)
|....+.|.+.+.+ ..+.+++|.|+=|+|||++++.+...+...
T Consensus 1 ~~~~a~~la~~I~~~~~~~~~~IgL~G~WGsGKSs~l~~l~~~L~~~ 47 (325)
T PF07693_consen 1 RKPYAKALAEIIKNPDSDDPFVIGLYGEWGSGKSSFLNMLKEELKED 47 (325)
T ss_pred ChHHHHHHHHHHhccCCCCCeEEEEECCCCCCHHHHHHHHHHHHhcc
Confidence 34455666676663 467789999999999999999999998876
No 144
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=98.36 E-value=1.9e-06 Score=74.94 Aligned_cols=104 Identities=18% Similarity=0.211 Sum_probs=58.5
Q ss_pred cccccchHHHHHHHHHHhcc-------C--CccEEEEEeCCCCcHHHHHHHHHhHHhhhhcccceEEEEecCCcCHHHHH
Q 035585 25 YEAFKSRLSTLKSIQDALTD-------V--NVNIVGVYGMGGIGKTTLVKEFARQASEEKLFDQVVFSEVSQTPDIKKIH 95 (183)
Q Consensus 25 ~~~~~gR~~~l~~l~~~l~~-------~--~~~~v~i~G~~G~GKTtL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 95 (183)
...++|.+..++.+.+.+.. . +...++++||+|+|||+||+.++..+.. ..+.++++.-....
T Consensus 453 ~~~v~GQ~~ai~~l~~~i~~~~~g~~~~~~p~~~~lf~Gp~GvGKT~lA~~la~~l~~-----~~~~~d~se~~~~~--- 524 (731)
T TIGR02639 453 KAKIFGQDEAIDSLVSSIKRSRAGLGNPNKPVGSFLFTGPTGVGKTELAKQLAEALGV-----HLERFDMSEYMEKH--- 524 (731)
T ss_pred hcceeCcHHHHHHHHHHHHHHhcCCCCCCCCceeEEEECCCCccHHHHHHHHHHHhcC-----CeEEEeCchhhhcc---
Confidence 44567777777777776551 1 2346899999999999999999987632 23444544321111
Q ss_pred HHHHHHhCCCchhHHHHHHHHHHHHHHhcCCeEEEEEeCCCCc
Q 035585 96 GEIAEKLGLEFSEEAESRRASRLYERLKKEKMILVILDNIWKY 138 (183)
Q Consensus 96 ~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~llvlD~~~~~ 138 (183)
.+...++.. +.....+....+...++....-+|+|||++..
T Consensus 525 -~~~~lig~~-~gyvg~~~~~~l~~~~~~~p~~VvllDEieka 565 (731)
T TIGR02639 525 -TVSRLIGAP-PGYVGFEQGGLLTEAVRKHPHCVLLLDEIEKA 565 (731)
T ss_pred -cHHHHhcCC-CCCcccchhhHHHHHHHhCCCeEEEEechhhc
Confidence 111112111 11000111122334444456679999999865
No 145
>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
Probab=98.36 E-value=1.5e-06 Score=63.79 Aligned_cols=55 Identities=11% Similarity=0.048 Sum_probs=37.6
Q ss_pred CCeEEEEEeCCCCccccc---ccCcCC-CCCCCCcEEEEEecChHHHhhcCCCCcchhh
Q 035585 125 EKMILVILDNIWKYLDLE---TVGIPF-GDDHRGCKLLLTARDCNVLLNMSLCRSEEEE 179 (183)
Q Consensus 125 ~~~~llvlD~~~~~~~~~---~l~~~~-~~~~~~~~iiitsr~~~~~~~~~~~~~~~~~ 179 (183)
=++-+++|||+.+..+-+ ..+..+ .....|..++++||+-.++..+.....+...
T Consensus 153 M~P~vmLFDEPTSALDPElv~EVL~vm~~LA~eGmTMivVTHEM~FAr~VadrviFmd~ 211 (240)
T COG1126 153 MDPKVMLFDEPTSALDPELVGEVLDVMKDLAEEGMTMIIVTHEMGFAREVADRVIFMDQ 211 (240)
T ss_pred CCCCEEeecCCcccCCHHHHHHHHHHHHHHHHcCCeEEEEechhHHHHHhhheEEEeeC
Confidence 567899999998775422 112222 1234588999999999999988776665543
No 146
>PTZ00361 26 proteosome regulatory subunit 4-like protein; Provisional
Probab=98.36 E-value=1.3e-06 Score=71.34 Aligned_cols=98 Identities=21% Similarity=0.277 Sum_probs=60.5
Q ss_pred cCCCcccccchHHHHHHHHHHhc----c---------CCccEEEEEeCCCCcHHHHHHHHHhHHhhhhcccceEEEEecC
Q 035585 21 SNKGYEAFKSRLSTLKSIQDALT----D---------VNVNIVGVYGMGGIGKTTLVKEFARQASEEKLFDQVVFSEVSQ 87 (183)
Q Consensus 21 ~~~~~~~~~gR~~~l~~l~~~l~----~---------~~~~~v~i~G~~G~GKTtL~~~~~~~~~~~~~~~~~~~~~~~~ 87 (183)
|.....++-|.+.+++.+.+++. . ..+..++|+|++|+|||++|+.+++..... | +.+..
T Consensus 178 p~~~~~DIgGl~~qi~~l~e~v~lpl~~p~~~~~~gi~~p~gVLL~GPPGTGKT~LAraIA~el~~~--f-----i~V~~ 250 (438)
T PTZ00361 178 PLESYADIGGLEQQIQEIKEAVELPLTHPELYDDIGIKPPKGVILYGPPGTGKTLLAKAVANETSAT--F-----LRVVG 250 (438)
T ss_pred CCCCHHHhcCHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCcEEEEECCCCCCHHHHHHHHHHhhCCC--E-----EEEec
Confidence 44445566788888888887653 1 245679999999999999999999976542 2 22211
Q ss_pred CcCHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHHhcCCeEEEEEeCCCCc
Q 035585 88 TPDIKKIHGEIAEKLGLEFSEEAESRRASRLYERLKKEKMILVILDNIWKY 138 (183)
Q Consensus 88 ~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~llvlD~~~~~ 138 (183)
. . + ...+.. .....+..++.......+.+|+|||+|..
T Consensus 251 s-e---L----~~k~~G-----e~~~~vr~lF~~A~~~~P~ILfIDEID~l 288 (438)
T PTZ00361 251 S-E---L----IQKYLG-----DGPKLVRELFRVAEENAPSIVFIDEIDAI 288 (438)
T ss_pred c-h---h----hhhhcc-----hHHHHHHHHHHHHHhCCCcEEeHHHHHHH
Confidence 1 1 1 111110 11122344555555577889999998743
No 147
>cd03281 ABC_MSH5_euk MutS5 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=98.35 E-value=6.7e-07 Score=66.43 Aligned_cols=23 Identities=26% Similarity=0.351 Sum_probs=20.9
Q ss_pred ccEEEEEeCCCCcHHHHHHHHHh
Q 035585 47 VNIVGVYGMGGIGKTTLVKEFAR 69 (183)
Q Consensus 47 ~~~v~i~G~~G~GKTtL~~~~~~ 69 (183)
.+.++|+|++|+||||+++.+..
T Consensus 29 ~~~~~itGpNg~GKStlLk~i~~ 51 (213)
T cd03281 29 PSIMVITGPNSSGKSVYLKQVAL 51 (213)
T ss_pred ceEEEEECCCCCChHHHHHHHHH
Confidence 48899999999999999999874
No 148
>PRK10865 protein disaggregation chaperone; Provisional
Probab=98.35 E-value=1.6e-06 Score=76.37 Aligned_cols=107 Identities=17% Similarity=0.224 Sum_probs=59.6
Q ss_pred cccccchHHHHHHHHHHhcc--------CC-ccEEEEEeCCCCcHHHHHHHHHhHHhhhhcccceEEEEecCCcCHHHHH
Q 035585 25 YEAFKSRLSTLKSIQDALTD--------VN-VNIVGVYGMGGIGKTTLVKEFARQASEEKLFDQVVFSEVSQTPDIKKIH 95 (183)
Q Consensus 25 ~~~~~gR~~~l~~l~~~l~~--------~~-~~~v~i~G~~G~GKTtL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 95 (183)
...++|....+..+...+.. .+ ...++++|++|+|||++|+.++..+... ....+.++++.-... .
T Consensus 567 ~~~viGQ~~ai~~l~~~i~~~~~gl~~~~~p~~~~Lf~Gp~G~GKT~lA~aLa~~l~~~--~~~~i~id~se~~~~-~-- 641 (857)
T PRK10865 567 HHRVIGQNEAVEAVSNAIRRSRAGLSDPNRPIGSFLFLGPTGVGKTELCKALANFMFDS--DDAMVRIDMSEFMEK-H-- 641 (857)
T ss_pred CCeEeCCHHHHHHHHHHHHHHHhcccCCCCCCceEEEECCCCCCHHHHHHHHHHHhhcC--CCcEEEEEhHHhhhh-h--
Confidence 34577888888888777651 11 2468999999999999999999876532 223445555432111 1
Q ss_pred HHHHHHhCCCchhHHHHHHHHHHHHHHhcCCeEEEEEeCCCCc
Q 035585 96 GEIAEKLGLEFSEEAESRRASRLYERLKKEKMILVILDNIWKY 138 (183)
Q Consensus 96 ~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~llvlD~~~~~ 138 (183)
...+.++. .+..........+...++....-+|+|||++.+
T Consensus 642 -~~~~LiG~-~pgy~g~~~~g~l~~~v~~~p~~vLllDEieka 682 (857)
T PRK10865 642 -SVSRLVGA-PPGYVGYEEGGYLTEAVRRRPYSVILLDEVEKA 682 (857)
T ss_pred -hHHHHhCC-CCcccccchhHHHHHHHHhCCCCeEEEeehhhC
Confidence 11111221 111100011112333333344579999999855
No 149
>TIGR02237 recomb_radB DNA repair and recombination protein RadB. This family consists exclusively of archaeal RadB protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239) and DMC1 (TIGR02238), and archaeal RadA (TIGR02236).
Probab=98.35 E-value=7.9e-06 Score=60.31 Aligned_cols=88 Identities=19% Similarity=0.268 Sum_probs=52.4
Q ss_pred CccEEEEEeCCCCcHHHHHHHHHhHHhhhhcccceEEEEecCCcCHHHHHHHHHHHh----CCC-----c-hhHHHHHHH
Q 035585 46 NVNIVGVYGMGGIGKTTLVKEFARQASEEKLFDQVVFSEVSQTPDIKKIHGEIAEKL----GLE-----F-SEEAESRRA 115 (183)
Q Consensus 46 ~~~~v~i~G~~G~GKTtL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l----~~~-----~-~~~~~~~~~ 115 (183)
...++.|+|++|+|||+++.+++...... ...++|++... .....+. .++... ... . .........
T Consensus 11 ~g~i~~i~G~~GsGKT~l~~~~~~~~~~~--g~~v~yi~~e~-~~~~rl~-~~~~~~~~~~~~~i~~~~~~~~~~~~~~~ 86 (209)
T TIGR02237 11 RGTITQIYGPPGSGKTNICMILAVNAARQ--GKKVVYIDTEG-LSPERFK-QIAEDRPERALSNFIVFEVFDFDEQGVAI 86 (209)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhC--CCeEEEEECCC-CCHHHHH-HHHHhChHHHhcCEEEEECCCHHHHHHHH
Confidence 35789999999999999999998877543 45688988875 3332222 222221 000 0 001111223
Q ss_pred HHHHHHHhcCCeEEEEEeCCCC
Q 035585 116 SRLYERLKKEKMILVILDNIWK 137 (183)
Q Consensus 116 ~~~~~~~~~~~~~llvlD~~~~ 137 (183)
..+...+...+.-+||||.+..
T Consensus 87 ~~l~~~~~~~~~~lvVIDSis~ 108 (209)
T TIGR02237 87 QKTSKFIDRDSASLVVVDSFTA 108 (209)
T ss_pred HHHHHHHhhcCccEEEEeCcHH
Confidence 4444444445678999999864
No 150
>COG2274 SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms]
Probab=98.34 E-value=9.8e-07 Score=75.91 Aligned_cols=54 Identities=19% Similarity=0.150 Sum_probs=34.3
Q ss_pred HHHHhcCCeEEEEEeCCCCcccccc---cCcCCCCCCCCcEEEEEecChHHHhhcCC
Q 035585 119 YERLKKEKMILVILDNIWKYLDLET---VGIPFGDDHRGCKLLLTARDCNVLLNMSL 172 (183)
Q Consensus 119 ~~~~~~~~~~llvlD~~~~~~~~~~---l~~~~~~~~~~~~iiitsr~~~~~~~~~~ 172 (183)
+.+..-.++-+|++||+.+..|-+. +...+.....|..+|+++|....+.....
T Consensus 620 lARaLl~~P~ILlLDEaTSaLD~~sE~~I~~~L~~~~~~~T~I~IaHRl~ti~~adr 676 (709)
T COG2274 620 LARALLSKPKILLLDEATSALDPETEAIILQNLLQILQGRTVIIIAHRLSTIRSADR 676 (709)
T ss_pred HHHHhccCCCEEEEeCcccccCHhHHHHHHHHHHHHhcCCeEEEEEccchHhhhccE
Confidence 3333348999999999876543221 12333344556788888888888775544
No 151
>cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.33 E-value=1.4e-06 Score=61.45 Aligned_cols=119 Identities=18% Similarity=0.206 Sum_probs=64.5
Q ss_pred CccEEEEEeCCCCcHHHHHHHHHhHHhhhhcccceEEEEecCCcC--HHHHHHHHHHHhCCCchhHHHHHH-HHHHHHHH
Q 035585 46 NVNIVGVYGMGGIGKTTLVKEFARQASEEKLFDQVVFSEVSQTPD--IKKIHGEIAEKLGLEFSEEAESRR-ASRLYERL 122 (183)
Q Consensus 46 ~~~~v~i~G~~G~GKTtL~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~i~~~l~~~~~~~~~~~~-~~~~~~~~ 122 (183)
+...++|.|++|+|||||++.+...+.. ..+.++++...... ... ....+..- ++.+..+. ...+...+
T Consensus 24 ~g~~~~i~G~nGsGKStll~~l~g~~~~---~~G~i~~~~~~~~~~~~~~----~~~~i~~~-~qlS~G~~~r~~l~~~l 95 (157)
T cd00267 24 AGEIVALVGPNGSGKSTLLRAIAGLLKP---TSGEILIDGKDIAKLPLEE----LRRRIGYV-PQLSGGQRQRVALARAL 95 (157)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCC---CccEEEECCEEcccCCHHH----HHhceEEE-eeCCHHHHHHHHHHHHH
Confidence 3478999999999999999999887643 23333433221111 111 11111110 00111222 22233333
Q ss_pred hcCCeEEEEEeCCCCccc---ccccCcCCCC-CCCCcEEEEEecChHHHhhcCCC
Q 035585 123 KKEKMILVILDNIWKYLD---LETVGIPFGD-DHRGCKLLLTARDCNVLLNMSLC 173 (183)
Q Consensus 123 ~~~~~~llvlD~~~~~~~---~~~l~~~~~~-~~~~~~iiitsr~~~~~~~~~~~ 173 (183)
. .++-++++||+....+ ...+...+.. ...+..++++||+.+.+.....+
T Consensus 96 ~-~~~~i~ilDEp~~~lD~~~~~~l~~~l~~~~~~~~tii~~sh~~~~~~~~~d~ 149 (157)
T cd00267 96 L-LNPDLLLLDEPTSGLDPASRERLLELLRELAEEGRTVIIVTHDPELAELAADR 149 (157)
T ss_pred h-cCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCE
Confidence 3 6789999999875543 2222222211 11256799999999988876443
No 152
>CHL00095 clpC Clp protease ATP binding subunit
Probab=98.32 E-value=2e-06 Score=75.70 Aligned_cols=133 Identities=17% Similarity=0.191 Sum_probs=72.6
Q ss_pred cccccchHHHHHHHHHHhcc-------C--CccEEEEEeCCCCcHHHHHHHHHhHHhhhhcccceEEEEecCCcCHHHHH
Q 035585 25 YEAFKSRLSTLKSIQDALTD-------V--NVNIVGVYGMGGIGKTTLVKEFARQASEEKLFDQVVFSEVSQTPDIKKIH 95 (183)
Q Consensus 25 ~~~~~gR~~~l~~l~~~l~~-------~--~~~~v~i~G~~G~GKTtL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 95 (183)
...++|.+..+..+.+.+.. . +...++++||+|+|||+||+.++..+... ....+.++++.-.....
T Consensus 508 ~~~v~GQ~~ai~~l~~~i~~~~~gl~~~~~p~~~~lf~Gp~GvGKt~lA~~LA~~l~~~--~~~~~~~d~s~~~~~~~-- 583 (821)
T CHL00095 508 HKRIIGQDEAVVAVSKAIRRARVGLKNPNRPIASFLFSGPTGVGKTELTKALASYFFGS--EDAMIRLDMSEYMEKHT-- 583 (821)
T ss_pred cCcCcChHHHHHHHHHHHHHHhhcccCCCCCceEEEEECCCCCcHHHHHHHHHHHhcCC--ccceEEEEchhcccccc--
Confidence 45677888888888776641 1 22467899999999999999999876432 12344445443221111
Q ss_pred HHHHHHhCCCchhHHHHHHHHHHHHHHhcCCeEEEEEeCCCCcc--cccccCcCCCC-----------CCCCcEEEEEec
Q 035585 96 GEIAEKLGLEFSEEAESRRASRLYERLKKEKMILVILDNIWKYL--DLETVGIPFGD-----------DHRGCKLLLTAR 162 (183)
Q Consensus 96 ~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~llvlD~~~~~~--~~~~l~~~~~~-----------~~~~~~iiitsr 162 (183)
+.+.++.+ ++-........+...++....-+|+|||++... .++.++..+.. ....+.+|+||.
T Consensus 584 --~~~l~g~~-~gyvg~~~~~~l~~~~~~~p~~VvllDeieka~~~v~~~Llq~le~g~~~d~~g~~v~~~~~i~I~Tsn 660 (821)
T CHL00095 584 --VSKLIGSP-PGYVGYNEGGQLTEAVRKKPYTVVLFDEIEKAHPDIFNLLLQILDDGRLTDSKGRTIDFKNTLIIMTSN 660 (821)
T ss_pred --HHHhcCCC-CcccCcCccchHHHHHHhCCCeEEEECChhhCCHHHHHHHHHHhccCceecCCCcEEecCceEEEEeCC
Confidence 11111111 110000111233444554555799999998662 23333333322 135677777877
Q ss_pred Ch
Q 035585 163 DC 164 (183)
Q Consensus 163 ~~ 164 (183)
-.
T Consensus 661 ~g 662 (821)
T CHL00095 661 LG 662 (821)
T ss_pred cc
Confidence 43
No 153
>TIGR01241 FtsH_fam ATP-dependent metalloprotease FtsH. HflB(FtsH) is a pleiotropic protein required for correct cell division in bacteria. It has ATP-dependent zinc metalloprotease activity. It was formerly designated cell division protein FtsH.
Probab=98.32 E-value=1.9e-06 Score=71.78 Aligned_cols=96 Identities=21% Similarity=0.252 Sum_probs=53.9
Q ss_pred CCcccccchHHHHHHHHHHhc------------cCCccEEEEEeCCCCcHHHHHHHHHhHHhhhhcccceEEEEecCCcC
Q 035585 23 KGYEAFKSRLSTLKSIQDALT------------DVNVNIVGVYGMGGIGKTTLVKEFARQASEEKLFDQVVFSEVSQTPD 90 (183)
Q Consensus 23 ~~~~~~~gR~~~l~~l~~~l~------------~~~~~~v~i~G~~G~GKTtL~~~~~~~~~~~~~~~~~~~~~~~~~~~ 90 (183)
....++.|-+.....+.+.+. ...++.++++||+|+|||++++.++...... ++.++..
T Consensus 52 ~~~~di~g~~~~k~~l~~~~~~l~~~~~~~~~g~~~~~giLL~GppGtGKT~la~alA~~~~~~-------~~~i~~~-- 122 (495)
T TIGR01241 52 VTFKDVAGIDEAKEELMEIVDFLKNPSKFTKLGAKIPKGVLLVGPPGTGKTLLAKAVAGEAGVP-------FFSISGS-- 122 (495)
T ss_pred CCHHHhCCHHHHHHHHHHHHHHHHCHHHHHhcCCCCCCcEEEECCCCCCHHHHHHHHHHHcCCC-------eeeccHH--
Confidence 334455666555544444322 2334569999999999999999998764322 2222211
Q ss_pred HHHHHHHHHHHhCCCchhHHHHHHHHHHHHHHhcCCeEEEEEeCCCCc
Q 035585 91 IKKIHGEIAEKLGLEFSEEAESRRASRLYERLKKEKMILVILDNIWKY 138 (183)
Q Consensus 91 ~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~llvlD~~~~~ 138 (183)
.+..... +. ....+..++.......+.+|+|||+|..
T Consensus 123 --~~~~~~~---g~------~~~~l~~~f~~a~~~~p~Il~iDEid~l 159 (495)
T TIGR01241 123 --DFVEMFV---GV------GASRVRDLFEQAKKNAPCIIFIDEIDAV 159 (495)
T ss_pred --HHHHHHh---cc------cHHHHHHHHHHHHhcCCCEEEEechhhh
Confidence 1111110 10 1123344555555567889999999754
No 154
>KOG1514 consensus Origin recognition complex, subunit 1, and related proteins [Replication, recombination and repair]
Probab=98.31 E-value=8.3e-06 Score=68.80 Aligned_cols=136 Identities=21% Similarity=0.169 Sum_probs=89.0
Q ss_pred CcccccchHHHHHHHHHHhc----c-CCccEEEEEeCCCCcHHHHHHHHHhHHhhh---hccc--ceEEEEecCCcCHHH
Q 035585 24 GYEAFKSRLSTLKSIQDALT----D-VNVNIVGVYGMGGIGKTTLVKEFARQASEE---KLFD--QVVFSEVSQTPDIKK 93 (183)
Q Consensus 24 ~~~~~~gR~~~l~~l~~~l~----~-~~~~~v~i~G~~G~GKTtL~~~~~~~~~~~---~~~~--~~~~~~~~~~~~~~~ 93 (183)
-+..+-+|+.+...|..++. . .....+-|.|.+|+|||..+..+...+... .-.. ..+.+|...-....+
T Consensus 394 vp~sLpcRe~E~~~I~~f~~~~i~~~~~g~~mYIsGvPGtGKT~tV~~Vm~~Lq~~s~~~e~p~f~yveINgm~l~~~~~ 473 (767)
T KOG1514|consen 394 VPESLPCRENEFSEIEDFLRSFISDQGLGSCMYISGVPGTGKTATVLEVMKELQTSSAQKELPKFDYVEINGLRLASPRE 473 (767)
T ss_pred ccccccchhHHHHHHHHHHHhhcCCCCCceeEEEecCCCCCceehHHHHHHHHHHHHhhcCCCCccEEEEcceeecCHHH
Confidence 45677899999999999876 2 334588999999999999999999877632 1111 234556666677888
Q ss_pred HHHHHHHHhCCCchhHHHHHHHHHHHHHHh----cCCeEEEEEeCCCCccc--ccccCcCCCCC-CCCcEEEEEe
Q 035585 94 IHGEIAEKLGLEFSEEAESRRASRLYERLK----KEKMILVILDNIWKYLD--LETVGIPFGDD-HRGCKLLLTA 161 (183)
Q Consensus 94 ~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~----~~~~~llvlD~~~~~~~--~~~l~~~~~~~-~~~~~iiits 161 (183)
++..|...+......... .++.+-.++. .....+|++||+|.+.. .+-+...++|. .++++++|.+
T Consensus 474 ~Y~~I~~~lsg~~~~~~~--al~~L~~~f~~~k~~~~~~VvLiDElD~Lvtr~QdVlYn~fdWpt~~~sKLvvi~ 546 (767)
T KOG1514|consen 474 IYEKIWEALSGERVTWDA--ALEALNFRFTVPKPKRSTTVVLIDELDILVTRSQDVLYNIFDWPTLKNSKLVVIA 546 (767)
T ss_pred HHHHHHHhcccCcccHHH--HHHHHHHhhccCCCCCCCEEEEeccHHHHhcccHHHHHHHhcCCcCCCCceEEEE
Confidence 999999888665444322 2233333332 25778999999987643 33334444442 3355544443
No 155
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=98.30 E-value=1.4e-06 Score=76.61 Aligned_cols=131 Identities=18% Similarity=0.209 Sum_probs=68.9
Q ss_pred ccccchHHHHHHHHHHhc-------cC--CccEEEEEeCCCCcHHHHHHHHHhHHhhhhcccceEEEEecCCcCHHHHHH
Q 035585 26 EAFKSRLSTLKSIQDALT-------DV--NVNIVGVYGMGGIGKTTLVKEFARQASEEKLFDQVVFSEVSQTPDIKKIHG 96 (183)
Q Consensus 26 ~~~~gR~~~l~~l~~~l~-------~~--~~~~v~i~G~~G~GKTtL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 (183)
..++|.+..++.+.+.+. .. +..+++++||+|+|||.||+.++..+... ....+-++++.-... .
T Consensus 566 ~~v~GQ~~Av~~v~~~i~~~~~gl~~~~~p~~~~lf~Gp~GvGKT~lA~~La~~l~~~--~~~~~~~dmse~~~~----~ 639 (852)
T TIGR03345 566 ERVIGQDHALEAIAERIRTARAGLEDPRKPLGVFLLVGPSGVGKTETALALAELLYGG--EQNLITINMSEFQEA----H 639 (852)
T ss_pred CeEcChHHHHHHHHHHHHHHhcCCCCCCCCceEEEEECCCCCCHHHHHHHHHHHHhCC--CcceEEEeHHHhhhh----h
Confidence 456777777777776653 11 22368999999999999999998876432 122233333321110 1
Q ss_pred HHHHHhCCCchhHHHHHHHHHHHHHHhcCCeEEEEEeCCCCcc--cccccCcCCCCC-----------CCCcEEEEEecC
Q 035585 97 EIAEKLGLEFSEEAESRRASRLYERLKKEKMILVILDNIWKYL--DLETVGIPFGDD-----------HRGCKLLLTARD 163 (183)
Q Consensus 97 ~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~llvlD~~~~~~--~~~~l~~~~~~~-----------~~~~~iiitsr~ 163 (183)
.+...++. .++.......-.+...++....-+|+|||++... .++.+...+... ...+.+|+||.-
T Consensus 640 ~~~~l~g~-~~gyvg~~~~g~L~~~v~~~p~svvllDEieka~~~v~~~Llq~ld~g~l~d~~Gr~vd~~n~iiI~TSNl 718 (852)
T TIGR03345 640 TVSRLKGS-PPGYVGYGEGGVLTEAVRRKPYSVVLLDEVEKAHPDVLELFYQVFDKGVMEDGEGREIDFKNTVILLTSNA 718 (852)
T ss_pred hhccccCC-CCCcccccccchHHHHHHhCCCcEEEEechhhcCHHHHHHHHHHhhcceeecCCCcEEeccccEEEEeCCC
Confidence 11111121 1111000001123344454667899999998552 233333333222 245767777664
No 156
>PRK06526 transposase; Provisional
Probab=98.30 E-value=1.1e-06 Score=66.90 Aligned_cols=29 Identities=28% Similarity=0.284 Sum_probs=25.0
Q ss_pred CccEEEEEeCCCCcHHHHHHHHHhHHhhh
Q 035585 46 NVNIVGVYGMGGIGKTTLVKEFARQASEE 74 (183)
Q Consensus 46 ~~~~v~i~G~~G~GKTtL~~~~~~~~~~~ 74 (183)
..+.+.++|++|+|||+|+..+.......
T Consensus 97 ~~~nlll~Gp~GtGKThLa~al~~~a~~~ 125 (254)
T PRK06526 97 GKENVVFLGPPGTGKTHLAIGLGIRACQA 125 (254)
T ss_pred cCceEEEEeCCCCchHHHHHHHHHHHHHC
Confidence 45689999999999999999998877654
No 157
>PRK15064 ABC transporter ATP-binding protein; Provisional
Probab=98.30 E-value=3.3e-06 Score=70.96 Aligned_cols=27 Identities=30% Similarity=0.448 Sum_probs=23.8
Q ss_pred CccEEEEEeCCCCcHHHHHHHHHhHHh
Q 035585 46 NVNIVGVYGMGGIGKTTLVKEFARQAS 72 (183)
Q Consensus 46 ~~~~v~i~G~~G~GKTtL~~~~~~~~~ 72 (183)
+...++|+|++|+|||||++.++..+.
T Consensus 26 ~Ge~~~liG~NGsGKSTLl~~l~Gl~~ 52 (530)
T PRK15064 26 GGNRYGLIGANGCGKSTFMKILGGDLE 52 (530)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 446899999999999999999998664
No 158
>cd03235 ABC_Metallic_Cations ABC component of the metal-type transporters. This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates.
Probab=98.30 E-value=3.6e-06 Score=62.35 Aligned_cols=27 Identities=26% Similarity=0.388 Sum_probs=23.4
Q ss_pred CccEEEEEeCCCCcHHHHHHHHHhHHh
Q 035585 46 NVNIVGVYGMGGIGKTTLVKEFARQAS 72 (183)
Q Consensus 46 ~~~~v~i~G~~G~GKTtL~~~~~~~~~ 72 (183)
+..+++|+|++|+|||||++.+.....
T Consensus 24 ~Ge~~~l~G~nGsGKSTLl~~l~G~~~ 50 (213)
T cd03235 24 PGEFLAIVGPNGAGKSTLLKAILGLLK 50 (213)
T ss_pred CCCEEEEECCCCCCHHHHHHHHcCCCC
Confidence 457899999999999999999987653
No 159
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=98.30 E-value=1.2e-06 Score=75.32 Aligned_cols=101 Identities=18% Similarity=0.310 Sum_probs=66.4
Q ss_pred cccccchHHHHHHHHHHhccCCccEEEEEeCCCCcHHHHHHHHHhHHhhhhcc----cc-eEEEEecCCcCHHHHHHHHH
Q 035585 25 YEAFKSRLSTLKSIQDALTDVNVNIVGVYGMGGIGKTTLVKEFARQASEEKLF----DQ-VVFSEVSQTPDIKKIHGEIA 99 (183)
Q Consensus 25 ~~~~~gR~~~l~~l~~~l~~~~~~~v~i~G~~G~GKTtL~~~~~~~~~~~~~~----~~-~~~~~~~~~~~~~~~~~~i~ 99 (183)
-...+||++|+.++.+.|.+.....-.++|++|+|||.++..++.+.-..+.. +. ++-.++..- ++
T Consensus 169 lDPvIGRd~EI~r~iqIL~RR~KNNPvLiGEpGVGKTAIvEGLA~rIv~g~VP~~L~~~~i~sLD~g~L---------vA 239 (786)
T COG0542 169 LDPVIGRDEEIRRTIQILSRRTKNNPVLVGEPGVGKTAIVEGLAQRIVNGDVPESLKDKRIYSLDLGSL---------VA 239 (786)
T ss_pred CCCCcChHHHHHHHHHHHhccCCCCCeEecCCCCCHHHHHHHHHHHHhcCCCCHHHcCCEEEEecHHHH---------hc
Confidence 34578999999999999986555666888999999999999999887654321 11 222222110 00
Q ss_pred HHhCCCchhHHHHHHHHHHHHHHhcCCeEEEEEeCCCCc
Q 035585 100 EKLGLEFSEEAESRRASRLYERLKKEKMILVILDNIWKY 138 (183)
Q Consensus 100 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~llvlD~~~~~ 138 (183)
+....+ ..++.+..+...+.+..+++|+|||+|..
T Consensus 240 ---GakyRG-eFEeRlk~vl~ev~~~~~vILFIDEiHti 274 (786)
T COG0542 240 ---GAKYRG-EFEERLKAVLKEVEKSKNVILFIDEIHTI 274 (786)
T ss_pred ---cccccC-cHHHHHHHHHHHHhcCCCeEEEEechhhh
Confidence 111112 23344556666666566999999999855
No 160
>PRK12377 putative replication protein; Provisional
Probab=98.29 E-value=1e-05 Score=61.36 Aligned_cols=74 Identities=19% Similarity=0.254 Sum_probs=47.0
Q ss_pred CccEEEEEeCCCCcHHHHHHHHHhHHhhhhcccceEEEEecCCcCHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHHhcC
Q 035585 46 NVNIVGVYGMGGIGKTTLVKEFARQASEEKLFDQVVFSEVSQTPDIKKIHGEIAEKLGLEFSEEAESRRASRLYERLKKE 125 (183)
Q Consensus 46 ~~~~v~i~G~~G~GKTtL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~ 125 (183)
....+.++|++|+|||+||..+++.+..+ ...+.|+.++ ++...+....... .....+++.+ .
T Consensus 100 ~~~~l~l~G~~GtGKThLa~AIa~~l~~~--g~~v~~i~~~------~l~~~l~~~~~~~-------~~~~~~l~~l--~ 162 (248)
T PRK12377 100 GCTNFVFSGKPGTGKNHLAAAIGNRLLAK--GRSVIVVTVP------DVMSRLHESYDNG-------QSGEKFLQEL--C 162 (248)
T ss_pred cCCeEEEECCCCCCHHHHHHHHHHHHHHc--CCCeEEEEHH------HHHHHHHHHHhcc-------chHHHHHHHh--c
Confidence 34689999999999999999999998764 3345665443 3333443322111 0112233333 5
Q ss_pred CeEEEEEeCCC
Q 035585 126 KMILVILDNIW 136 (183)
Q Consensus 126 ~~~llvlD~~~ 136 (183)
+.-||||||+.
T Consensus 163 ~~dLLiIDDlg 173 (248)
T PRK12377 163 KVDLLVLDEIG 173 (248)
T ss_pred CCCEEEEcCCC
Confidence 77899999995
No 161
>cd03215 ABC_Carb_Monos_II This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=98.29 E-value=3.3e-06 Score=61.12 Aligned_cols=27 Identities=30% Similarity=0.431 Sum_probs=23.5
Q ss_pred CccEEEEEeCCCCcHHHHHHHHHhHHh
Q 035585 46 NVNIVGVYGMGGIGKTTLVKEFARQAS 72 (183)
Q Consensus 46 ~~~~v~i~G~~G~GKTtL~~~~~~~~~ 72 (183)
+...++|.|++|+|||||++.+.....
T Consensus 25 ~G~~~~i~G~nGsGKSTLl~~l~G~~~ 51 (182)
T cd03215 25 AGEIVGIAGLVGNGQTELAEALFGLRP 51 (182)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCCC
Confidence 446899999999999999999987654
No 162
>KOG0739 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=98.28 E-value=5.3e-06 Score=63.78 Aligned_cols=73 Identities=25% Similarity=0.344 Sum_probs=50.2
Q ss_pred CccEEEEEeCCCCcHHHHHHHHHhHHhhhhcccceEEEEecCCcCHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHHhcC
Q 035585 46 NVNIVGVYGMGGIGKTTLVKEFARQASEEKLFDQVVFSEVSQTPDIKKIHGEIAEKLGLEFSEEAESRRASRLYERLKKE 125 (183)
Q Consensus 46 ~~~~v~i~G~~G~GKTtL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~ 125 (183)
+-+-++++||+|+|||.||++++.+... . |+.+++..- .. ..++ ..+..+..+++..+++
T Consensus 165 PwrgiLLyGPPGTGKSYLAKAVATEAnS------T-FFSvSSSDL----vS---KWmG------ESEkLVknLFemARe~ 224 (439)
T KOG0739|consen 165 PWRGILLYGPPGTGKSYLAKAVATEANS------T-FFSVSSSDL----VS---KWMG------ESEKLVKNLFEMAREN 224 (439)
T ss_pred cceeEEEeCCCCCcHHHHHHHHHhhcCC------c-eEEeehHHH----HH---HHhc------cHHHHHHHHHHHHHhc
Confidence 3467999999999999999999886443 2 223333211 11 1122 1234567788888889
Q ss_pred CeEEEEEeCCCCc
Q 035585 126 KMILVILDNIWKY 138 (183)
Q Consensus 126 ~~~llvlD~~~~~ 138 (183)
++.+|+|||+|.+
T Consensus 225 kPSIIFiDEiDsl 237 (439)
T KOG0739|consen 225 KPSIIFIDEIDSL 237 (439)
T ss_pred CCcEEEeehhhhh
Confidence 9999999999866
No 163
>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=98.28 E-value=1.1e-06 Score=65.27 Aligned_cols=49 Identities=14% Similarity=0.150 Sum_probs=30.8
Q ss_pred cCCeEEEEEeCCCCccc---ccccCcCCC--CCCCCcEEEEEecChHHHhhcCC
Q 035585 124 KEKMILVILDNIWKYLD---LETVGIPFG--DDHRGCKLLLTARDCNVLLNMSL 172 (183)
Q Consensus 124 ~~~~~llvlD~~~~~~~---~~~l~~~~~--~~~~~~~iiitsr~~~~~~~~~~ 172 (183)
...+-+|+.||...-.+ -..+...+. ....|..+|++|||..++.....
T Consensus 158 ~~~P~iilADEPTgnLD~~t~~~V~~ll~~~~~~~g~tii~VTHd~~lA~~~dr 211 (226)
T COG1136 158 INNPKIILADEPTGNLDSKTAKEVLELLRELNKERGKTIIMVTHDPELAKYADR 211 (226)
T ss_pred hcCCCeEEeeCccccCChHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHhCCE
Confidence 48899999999753321 111112222 12347789999999999885443
No 164
>PRK08116 hypothetical protein; Validated
Probab=98.28 E-value=1.5e-05 Score=61.31 Aligned_cols=101 Identities=20% Similarity=0.176 Sum_probs=56.7
Q ss_pred cEEEEEeCCCCcHHHHHHHHHhHHhhhhcccceEEEEecCCcCHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHHhcCCe
Q 035585 48 NIVGVYGMGGIGKTTLVKEFARQASEEKLFDQVVFSEVSQTPDIKKIHGEIAEKLGLEFSEEAESRRASRLYERLKKEKM 127 (183)
Q Consensus 48 ~~v~i~G~~G~GKTtL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 127 (183)
..+.|+|++|+|||.||..+++.+..+ ...++|++. .+++..+...+..... .....+.+.+. ..
T Consensus 115 ~gl~l~G~~GtGKThLa~aia~~l~~~--~~~v~~~~~------~~ll~~i~~~~~~~~~-----~~~~~~~~~l~--~~ 179 (268)
T PRK08116 115 VGLLLWGSVGTGKTYLAACIANELIEK--GVPVIFVNF------PQLLNRIKSTYKSSGK-----EDENEIIRSLV--NA 179 (268)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHHHHc--CCeEEEEEH------HHHHHHHHHHHhcccc-----ccHHHHHHHhc--CC
Confidence 458999999999999999999998765 334666543 3344444433322111 11223444443 33
Q ss_pred EEEEEeCCCC--cccc--cccCcCCCC-CCCCcEEEEEecC
Q 035585 128 ILVILDNIWK--YLDL--ETVGIPFGD-DHRGCKLLLTARD 163 (183)
Q Consensus 128 ~llvlD~~~~--~~~~--~~l~~~~~~-~~~~~~iiitsr~ 163 (183)
-+|||||+.. ..+| ..+...++. ...+..+|+||..
T Consensus 180 dlLviDDlg~e~~t~~~~~~l~~iin~r~~~~~~~IiTsN~ 220 (268)
T PRK08116 180 DLLILDDLGAERDTEWAREKVYNIIDSRYRKGLPTIVTTNL 220 (268)
T ss_pred CEEEEecccCCCCCHHHHHHHHHHHHHHHHCCCCEEEECCC
Confidence 4899999953 2222 222222222 1234557777764
No 165
>PF14516 AAA_35: AAA-like domain
Probab=98.27 E-value=3.4e-05 Score=61.13 Aligned_cols=115 Identities=15% Similarity=0.226 Sum_probs=71.2
Q ss_pred CCCcccccchHHHHHHHHHHhccCCccEEEEEeCCCCcHHHHHHHHHhHHhhhhcccceEEEEecCC-----cCHHHHH-
Q 035585 22 NKGYEAFKSRLSTLKSIQDALTDVNVNIVGVYGMGGIGKTTLVKEFARQASEEKLFDQVVFSEVSQT-----PDIKKIH- 95 (183)
Q Consensus 22 ~~~~~~~~gR~~~l~~l~~~l~~~~~~~v~i~G~~G~GKTtL~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~- 95 (183)
+.+...++.|...-+.+.+.+.+ +...+.|.|+..+|||+|+..+.+.+... -..++++++... .+...++
T Consensus 7 ~~~~~~Yi~R~~~e~~~~~~i~~-~G~~~~I~apRq~GKTSll~~l~~~l~~~--~~~~v~id~~~~~~~~~~~~~~f~~ 83 (331)
T PF14516_consen 7 PLDSPFYIERPPAEQECYQEIVQ-PGSYIRIKAPRQMGKTSLLLRLLERLQQQ--GYRCVYIDLQQLGSAIFSDLEQFLR 83 (331)
T ss_pred CCCCCcccCchHHHHHHHHHHhc-CCCEEEEECcccCCHHHHHHHHHHHHHHC--CCEEEEEEeecCCCcccCCHHHHHH
Confidence 34555678899666666666643 35789999999999999999999988875 234667777542 2344444
Q ss_pred ---HHHHHHhCCCchhHHHHH-------HHHHHH-HHHh--cCCeEEEEEeCCCCcc
Q 035585 96 ---GEIAEKLGLEFSEEAESR-------RASRLY-ERLK--KEKMILVILDNIWKYL 139 (183)
Q Consensus 96 ---~~i~~~l~~~~~~~~~~~-------~~~~~~-~~~~--~~~~~llvlD~~~~~~ 139 (183)
..+.+.+.....-...+. .....+ +.+. .+++++|+|||+|...
T Consensus 84 ~~~~~i~~~L~l~~~l~~~w~~~~~~~~~~~~~~~~~ll~~~~~~lVL~iDEiD~l~ 140 (331)
T PF14516_consen 84 WFCEEISRQLKLDEKLDEYWDEEIGSKISCTEYFEEYLLKQIDKPLVLFIDEIDRLF 140 (331)
T ss_pred HHHHHHHHHcCCChhHHHHHHHhcCChhhHHHHHHHHHHhcCCCCEEEEEechhhhc
Confidence 444555544322111111 112222 2221 2689999999998653
No 166
>PRK07952 DNA replication protein DnaC; Validated
Probab=98.27 E-value=1.6e-05 Score=60.24 Aligned_cols=89 Identities=18% Similarity=0.240 Sum_probs=52.4
Q ss_pred HHHHHHHHhcc--CCccEEEEEeCCCCcHHHHHHHHHhHHhhhhcccceEEEEecCCcCHHHHHHHHHHHhCCCchhHHH
Q 035585 34 TLKSIQDALTD--VNVNIVGVYGMGGIGKTTLVKEFARQASEEKLFDQVVFSEVSQTPDIKKIHGEIAEKLGLEFSEEAE 111 (183)
Q Consensus 34 ~l~~l~~~l~~--~~~~~v~i~G~~G~GKTtL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~ 111 (183)
.+..+..+..+ .....+.++|++|+|||+|+..+++.+... ...++++. ..++...+...+.. ..
T Consensus 84 al~~a~~~~~~~~~~~~~~~l~G~~GtGKThLa~aia~~l~~~--g~~v~~it------~~~l~~~l~~~~~~--~~--- 150 (244)
T PRK07952 84 ALSKARQYVEEFDGNIASFIFSGKPGTGKNHLAAAICNELLLR--GKSVLIIT------VADIMSAMKDTFSN--SE--- 150 (244)
T ss_pred HHHHHHHHHHhhccCCceEEEECCCCCCHHHHHHHHHHHHHhc--CCeEEEEE------HHHHHHHHHHHHhh--cc---
Confidence 44455544432 223578999999999999999999988764 33456653 33344444333210 00
Q ss_pred HHHHHHHHHHHhcCCeEEEEEeCCCCc
Q 035585 112 SRRASRLYERLKKEKMILVILDNIWKY 138 (183)
Q Consensus 112 ~~~~~~~~~~~~~~~~~llvlD~~~~~ 138 (183)
.....++..+. +.-+|||||+...
T Consensus 151 -~~~~~~l~~l~--~~dlLvIDDig~~ 174 (244)
T PRK07952 151 -TSEEQLLNDLS--NVDLLVIDEIGVQ 174 (244)
T ss_pred -ccHHHHHHHhc--cCCEEEEeCCCCC
Confidence 11123344443 4668999998644
No 167
>KOG0744 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=98.27 E-value=1.5e-06 Score=67.23 Aligned_cols=28 Identities=32% Similarity=0.417 Sum_probs=25.0
Q ss_pred ccEEEEEeCCCCcHHHHHHHHHhHHhhh
Q 035585 47 VNIVGVYGMGGIGKTTLVKEFARQASEE 74 (183)
Q Consensus 47 ~~~v~i~G~~G~GKTtL~~~~~~~~~~~ 74 (183)
.++++++||||+|||+|++++++++..+
T Consensus 177 NRliLlhGPPGTGKTSLCKaLaQkLSIR 204 (423)
T KOG0744|consen 177 NRLILLHGPPGTGKTSLCKALAQKLSIR 204 (423)
T ss_pred eeEEEEeCCCCCChhHHHHHHHHhheee
Confidence 3789999999999999999999998653
No 168
>KOG0727 consensus 26S proteasome regulatory complex, ATPase RPT3 [Posttranslational modification, protein turnover, chaperones]
Probab=98.27 E-value=2.4e-06 Score=64.25 Aligned_cols=74 Identities=23% Similarity=0.266 Sum_probs=50.6
Q ss_pred CCccEEEEEeCCCCcHHHHHHHHHhHHhhhhcccceEEEEecCCcCHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHHhc
Q 035585 45 VNVNIVGVYGMGGIGKTTLVKEFARQASEEKLFDQVVFSEVSQTPDIKKIHGEIAEKLGLEFSEEAESRRASRLYERLKK 124 (183)
Q Consensus 45 ~~~~~v~i~G~~G~GKTtL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~ 124 (183)
++++-++++||+|+|||.|++++++.-... |+.+... ++..+.+ +. . ..+++.++...++
T Consensus 187 dpprgvllygppg~gktml~kava~~t~a~-------firvvgs----efvqkyl---ge-g-----prmvrdvfrlake 246 (408)
T KOG0727|consen 187 DPPRGVLLYGPPGTGKTMLAKAVANHTTAA-------FIRVVGS----EFVQKYL---GE-G-----PRMVRDVFRLAKE 246 (408)
T ss_pred CCCcceEEeCCCCCcHHHHHHHHhhccchh-------eeeeccH----HHHHHHh---cc-C-----cHHHHHHHHHHhc
Confidence 577889999999999999999999876553 2333221 2222222 21 1 2345666666777
Q ss_pred CCeEEEEEeCCCCc
Q 035585 125 EKMILVILDNIWKY 138 (183)
Q Consensus 125 ~~~~llvlD~~~~~ 138 (183)
+.+.++++|+++..
T Consensus 247 napsiifideidai 260 (408)
T KOG0727|consen 247 NAPSIIFIDEIDAI 260 (408)
T ss_pred cCCcEEEeehhhhH
Confidence 89999999998743
No 169
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=98.27 E-value=1.3e-06 Score=64.08 Aligned_cols=112 Identities=11% Similarity=0.084 Sum_probs=58.0
Q ss_pred cEEEEEeCCCCcHHHHHHHHHhHHhhhhcccceEEEEecCCcCHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHHhcCCe
Q 035585 48 NIVGVYGMGGIGKTTLVKEFARQASEEKLFDQVVFSEVSQTPDIKKIHGEIAEKLGLEFSEEAESRRASRLYERLKKEKM 127 (183)
Q Consensus 48 ~~v~i~G~~G~GKTtL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 127 (183)
.+++|+|++|+||||++..+...+... ....++.+.-+....... ...+..+...... .......+...++ ..+
T Consensus 2 GlilI~GptGSGKTTll~~ll~~~~~~-~~~~i~t~e~~~E~~~~~-~~~~i~q~~vg~~---~~~~~~~i~~aLr-~~p 75 (198)
T cd01131 2 GLVLVTGPTGSGKSTTLAAMIDYINKN-KTHHILTIEDPIEFVHES-KRSLINQREVGLD---TLSFENALKAALR-QDP 75 (198)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhhhc-CCcEEEEEcCCccccccC-ccceeeecccCCC---ccCHHHHHHHHhc-CCc
Confidence 578999999999999999988776543 111222222111100000 0011110000000 1111223333444 568
Q ss_pred EEEEEeCCCCcccccccCcCCCCCCCCcEEEEEecChHHHh
Q 035585 128 ILVILDNIWKYLDLETVGIPFGDDHRGCKLLLTARDCNVLL 168 (183)
Q Consensus 128 ~llvlD~~~~~~~~~~l~~~~~~~~~~~~iiitsr~~~~~~ 168 (183)
-++++||+.+.+.+....... ..|..++.|+|..+...
T Consensus 76 d~ii~gEird~e~~~~~l~~a---~~G~~v~~t~Ha~~~~~ 113 (198)
T cd01131 76 DVILVGEMRDLETIRLALTAA---ETGHLVMSTLHTNSAAK 113 (198)
T ss_pred CEEEEcCCCCHHHHHHHHHHH---HcCCEEEEEecCCcHHH
Confidence 899999997665443332221 23556888999877654
No 170
>PRK11147 ABC transporter ATPase component; Reviewed
Probab=98.27 E-value=5.1e-06 Score=71.23 Aligned_cols=49 Identities=20% Similarity=0.237 Sum_probs=32.5
Q ss_pred CCeEEEEEeCCCCccccccc---CcCCCCCCCCcEEEEEecChHHHhhcCCCCc
Q 035585 125 EKMILVILDNIWKYLDLETV---GIPFGDDHRGCKLLLTARDCNVLLNMSLCRS 175 (183)
Q Consensus 125 ~~~~llvlD~~~~~~~~~~l---~~~~~~~~~~~~iiitsr~~~~~~~~~~~~~ 175 (183)
.++-+|++||..+..+.... ...+... .+ .||++|||..++..+.+...
T Consensus 173 ~~P~lLLLDEPt~~LD~~~~~~L~~~L~~~-~~-tvlivsHd~~~l~~~~d~i~ 224 (635)
T PRK11147 173 SNPDVLLLDEPTNHLDIETIEWLEGFLKTF-QG-SIIFISHDRSFIRNMATRIV 224 (635)
T ss_pred cCCCEEEEcCCCCccCHHHHHHHHHHHHhC-CC-EEEEEeCCHHHHHHhcCeEE
Confidence 67889999999877543222 2222222 24 69999999999887665443
No 171
>PRK10636 putative ABC transporter ATP-binding protein; Provisional
Probab=98.27 E-value=3.5e-06 Score=72.22 Aligned_cols=50 Identities=24% Similarity=0.187 Sum_probs=33.2
Q ss_pred cCCeEEEEEeCCCCccccccc---CcCCCCCCCCcEEEEEecChHHHhhcCCCCc
Q 035585 124 KEKMILVILDNIWKYLDLETV---GIPFGDDHRGCKLLLTARDCNVLLNMSLCRS 175 (183)
Q Consensus 124 ~~~~~llvlD~~~~~~~~~~l---~~~~~~~~~~~~iiitsr~~~~~~~~~~~~~ 175 (183)
..++-+|+|||..+..+.... ...+... .+ .||++|||..++..+.+...
T Consensus 165 ~~~P~lLLLDEPtn~LD~~~~~~L~~~L~~~-~~-tviivsHd~~~l~~~~d~i~ 217 (638)
T PRK10636 165 ICRSDLLLLDEPTNHLDLDAVIWLEKWLKSY-QG-TLILISHDRDFLDPIVDKII 217 (638)
T ss_pred ccCCCEEEEcCCCCcCCHHHHHHHHHHHHhC-CC-eEEEEeCCHHHHHHhcCEEE
Confidence 377889999999877553332 2222222 24 69999999999887665443
No 172
>cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=98.26 E-value=5.2e-06 Score=61.37 Aligned_cols=27 Identities=26% Similarity=0.342 Sum_probs=23.2
Q ss_pred CccEEEEEeCCCCcHHHHHHHHHhHHh
Q 035585 46 NVNIVGVYGMGGIGKTTLVKEFARQAS 72 (183)
Q Consensus 46 ~~~~v~i~G~~G~GKTtL~~~~~~~~~ 72 (183)
+..+++|.|++|+|||||++.++....
T Consensus 26 ~G~~~~l~G~nGsGKSTLl~~l~G~~~ 52 (211)
T cd03225 26 KGEFVLIVGPNGSGKSTLLRLLNGLLG 52 (211)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhcCCC
Confidence 457899999999999999999986543
No 173
>PRK04296 thymidine kinase; Provisional
Probab=98.26 E-value=7.6e-07 Score=64.95 Aligned_cols=110 Identities=17% Similarity=0.174 Sum_probs=59.9
Q ss_pred cEEEEEeCCCCcHHHHHHHHHhHHhhhhcccceEEEEecCCcCHHHHHHHHHHHhCCCchh---HHHHHHHHHHHHHHhc
Q 035585 48 NIVGVYGMGGIGKTTLVKEFARQASEEKLFDQVVFSEVSQTPDIKKIHGEIAEKLGLEFSE---EAESRRASRLYERLKK 124 (183)
Q Consensus 48 ~~v~i~G~~G~GKTtL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~---~~~~~~~~~~~~~~~~ 124 (183)
.+.+++|+.|+||||++..++.+.... ...++++...-+ .......+++.++...+. ....+....+.. ..
T Consensus 3 ~i~litG~~GsGKTT~~l~~~~~~~~~--g~~v~i~k~~~d--~~~~~~~i~~~lg~~~~~~~~~~~~~~~~~~~~--~~ 76 (190)
T PRK04296 3 KLEFIYGAMNSGKSTELLQRAYNYEER--GMKVLVFKPAID--DRYGEGKVVSRIGLSREAIPVSSDTDIFELIEE--EG 76 (190)
T ss_pred EEEEEECCCCCHHHHHHHHHHHHHHHc--CCeEEEEecccc--ccccCCcEecCCCCcccceEeCChHHHHHHHHh--hC
Confidence 467899999999999999999888654 233444421101 111122344444432221 111122222222 33
Q ss_pred CCeEEEEEeCCCCcc--cccccCcCCCCCCCCcEEEEEecChH
Q 035585 125 EKMILVILDNIWKYL--DLETVGIPFGDDHRGCKLLLTARDCN 165 (183)
Q Consensus 125 ~~~~llvlD~~~~~~--~~~~l~~~~~~~~~~~~iiitsr~~~ 165 (183)
++.-+|++||++-.. ++..+...+ ...|..+++|.++..
T Consensus 77 ~~~dvviIDEaq~l~~~~v~~l~~~l--~~~g~~vi~tgl~~~ 117 (190)
T PRK04296 77 EKIDCVLIDEAQFLDKEQVVQLAEVL--DDLGIPVICYGLDTD 117 (190)
T ss_pred CCCCEEEEEccccCCHHHHHHHHHHH--HHcCCeEEEEecCcc
Confidence 456799999997542 122222221 345788999999844
No 174
>cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=98.26 E-value=4.7e-06 Score=61.38 Aligned_cols=27 Identities=37% Similarity=0.454 Sum_probs=23.4
Q ss_pred CccEEEEEeCCCCcHHHHHHHHHhHHh
Q 035585 46 NVNIVGVYGMGGIGKTTLVKEFARQAS 72 (183)
Q Consensus 46 ~~~~v~i~G~~G~GKTtL~~~~~~~~~ 72 (183)
+...++|.|++|+|||||++.++....
T Consensus 25 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~~ 51 (205)
T cd03226 25 AGEIIALTGKNGAGKTTLAKILAGLIK 51 (205)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence 457899999999999999999987653
No 175
>PRK08084 DNA replication initiation factor; Provisional
Probab=98.26 E-value=7.2e-06 Score=61.83 Aligned_cols=52 Identities=19% Similarity=0.301 Sum_probs=37.4
Q ss_pred HHHHHHHHHhccCCccEEEEEeCCCCcHHHHHHHHHhHHhhhhcccceEEEEec
Q 035585 33 STLKSIQDALTDVNVNIVGVYGMGGIGKTTLVKEFARQASEEKLFDQVVFSEVS 86 (183)
Q Consensus 33 ~~l~~l~~~l~~~~~~~v~i~G~~G~GKTtL~~~~~~~~~~~~~~~~~~~~~~~ 86 (183)
..+..+..+......+.+.|+|++|+|||+|+..+++..... ...+.|+.+.
T Consensus 31 ~a~~~l~~~~~~~~~~~l~l~Gp~G~GKThLl~a~~~~~~~~--~~~v~y~~~~ 82 (235)
T PRK08084 31 SLLAALQNALRQEHSGYIYLWSREGAGRSHLLHAACAELSQR--GRAVGYVPLD 82 (235)
T ss_pred HHHHHHHHHHhCCCCCeEEEECCCCCCHHHHHHHHHHHHHhC--CCeEEEEEHH
Confidence 345555555544555789999999999999999999887653 3346666554
No 176
>PRK11248 tauB taurine transporter ATP-binding subunit; Provisional
Probab=98.25 E-value=6.4e-06 Score=62.84 Aligned_cols=27 Identities=33% Similarity=0.399 Sum_probs=23.6
Q ss_pred CccEEEEEeCCCCcHHHHHHHHHhHHh
Q 035585 46 NVNIVGVYGMGGIGKTTLVKEFARQAS 72 (183)
Q Consensus 46 ~~~~v~i~G~~G~GKTtL~~~~~~~~~ 72 (183)
+...++|.|++|+|||||++.++....
T Consensus 26 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~~ 52 (255)
T PRK11248 26 SGELLVVLGPSGCGKTTLLNLIAGFVP 52 (255)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 457899999999999999999987654
No 177
>PRK08058 DNA polymerase III subunit delta'; Validated
Probab=98.25 E-value=7.1e-06 Score=64.88 Aligned_cols=130 Identities=12% Similarity=0.078 Sum_probs=70.7
Q ss_pred cc-hHHHHHHHHHHhccCC-ccEEEEEeCCCCcHHHHHHHHHhHHhhhhcccceEEEEecCCcCHHHHHHHHHH----Hh
Q 035585 29 KS-RLSTLKSIQDALTDVN-VNIVGVYGMGGIGKTTLVKEFARQASEEKLFDQVVFSEVSQTPDIKKIHGEIAE----KL 102 (183)
Q Consensus 29 ~g-R~~~l~~l~~~l~~~~-~~~v~i~G~~G~GKTtL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~----~l 102 (183)
+| -+...+.|.+.+...+ ++.++++|++|+|||++|+.+...+-........ .+.... .+..+.. .+
T Consensus 8 ~~~q~~~~~~L~~~~~~~~l~ha~Lf~G~~G~gk~~~a~~la~~l~c~~~~~~~---~cg~C~----~c~~~~~~~hpD~ 80 (329)
T PRK08058 8 TALQPVVVKMLQNSIAKNRLSHAYLFEGAKGTGKKATALWLAKSLFCLERNGVE---PCGTCT----NCKRIDSGNHPDV 80 (329)
T ss_pred HhhHHHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHHHCCCCCCCCC---CCCcCH----HHHHHhcCCCCCE
Confidence 44 5556677777776444 4567999999999999999998876432111000 000000 0000000 00
Q ss_pred CCCch--hHHHHHHHHHHHHHHh----cCCeEEEEEeCCCCcc--cccccCcCCCCCCCCcEEEEEecChH
Q 035585 103 GLEFS--EEAESRRASRLYERLK----KEKMILVILDNIWKYL--DLETVGIPFGDDHRGCKLLLTARDCN 165 (183)
Q Consensus 103 ~~~~~--~~~~~~~~~~~~~~~~----~~~~~llvlD~~~~~~--~~~~l~~~~~~~~~~~~iiitsr~~~ 165 (183)
..-.+ .....+.+..+.+.+. ..++.++|||+++.+. ..+.++..+.....++.+|++|.+..
T Consensus 81 ~~i~~~~~~i~id~ir~l~~~~~~~~~~~~~kvviI~~a~~~~~~a~NaLLK~LEEPp~~~~~Il~t~~~~ 151 (329)
T PRK08058 81 HLVAPDGQSIKKDQIRYLKEEFSKSGVESNKKVYIIEHADKMTASAANSLLKFLEEPSGGTTAILLTENKH 151 (329)
T ss_pred EEeccccccCCHHHHHHHHHHHhhCCcccCceEEEeehHhhhCHHHHHHHHHHhcCCCCCceEEEEeCChH
Confidence 00000 0001122223333221 3567899999998774 46667677766677888888877544
No 178
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]
Probab=98.25 E-value=1.3e-05 Score=61.13 Aligned_cols=90 Identities=18% Similarity=0.199 Sum_probs=54.5
Q ss_pred hHHHHHHHHHHhc-cCCccEEEEEeCCCCcHHHHHHHHHhHHhhhhcccceEEEEecCCcCHHHHHHHHHHHhCCCchhH
Q 035585 31 RLSTLKSIQDALT-DVNVNIVGVYGMGGIGKTTLVKEFARQASEEKLFDQVVFSEVSQTPDIKKIHGEIAEKLGLEFSEE 109 (183)
Q Consensus 31 R~~~l~~l~~~l~-~~~~~~v~i~G~~G~GKTtL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~ 109 (183)
+.+.+..+..... =++...++++|++|+|||.||.++.+++... ...+.|++ ..++...+........
T Consensus 88 ~~~~l~~~~~~~~~~~~~~nl~l~G~~G~GKThLa~Ai~~~l~~~--g~sv~f~~------~~el~~~Lk~~~~~~~--- 156 (254)
T COG1484 88 DKKALEDLASLVEFFERGENLVLLGPPGVGKTHLAIAIGNELLKA--GISVLFIT------APDLLSKLKAAFDEGR--- 156 (254)
T ss_pred hHHHHHHHHHHHHHhccCCcEEEECCCCCcHHHHHHHHHHHHHHc--CCeEEEEE------HHHHHHHHHHHHhcCc---
Confidence 4444444443322 1266789999999999999999999999832 33456644 3445556655443310
Q ss_pred HHHHHHHHHHHHHhcCCeEEEEEeCCCC
Q 035585 110 AESRRASRLYERLKKEKMILVILDNIWK 137 (183)
Q Consensus 110 ~~~~~~~~~~~~~~~~~~~llvlD~~~~ 137 (183)
. -..+...+ .+--||||||+..
T Consensus 157 -~---~~~l~~~l--~~~dlLIiDDlG~ 178 (254)
T COG1484 157 -L---EEKLLREL--KKVDLLIIDDIGY 178 (254)
T ss_pred -h---HHHHHHHh--hcCCEEEEecccC
Confidence 0 11222223 4566899999864
No 179
>PRK09183 transposase/IS protein; Provisional
Probab=98.24 E-value=1.1e-06 Score=67.08 Aligned_cols=37 Identities=24% Similarity=0.295 Sum_probs=27.3
Q ss_pred CccEEEEEeCCCCcHHHHHHHHHhHHhhhhcccceEEEE
Q 035585 46 NVNIVGVYGMGGIGKTTLVKEFARQASEEKLFDQVVFSE 84 (183)
Q Consensus 46 ~~~~v~i~G~~G~GKTtL~~~~~~~~~~~~~~~~~~~~~ 84 (183)
+...+.|+|++|+|||+|+..+....... ...+.|++
T Consensus 101 ~~~~v~l~Gp~GtGKThLa~al~~~a~~~--G~~v~~~~ 137 (259)
T PRK09183 101 RNENIVLLGPSGVGKTHLAIALGYEAVRA--GIKVRFTT 137 (259)
T ss_pred cCCeEEEEeCCCCCHHHHHHHHHHHHHHc--CCeEEEEe
Confidence 34678899999999999999998765543 22345543
No 180
>PRK14088 dnaA chromosomal replication initiation protein; Provisional
Probab=98.24 E-value=1.4e-05 Score=65.64 Aligned_cols=77 Identities=17% Similarity=0.322 Sum_probs=48.4
Q ss_pred ccEEEEEeCCCCcHHHHHHHHHhHHhhhhcccceEEEEecCCcCHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHHhcCC
Q 035585 47 VNIVGVYGMGGIGKTTLVKEFARQASEEKLFDQVVFSEVSQTPDIKKIHGEIAEKLGLEFSEEAESRRASRLYERLKKEK 126 (183)
Q Consensus 47 ~~~v~i~G~~G~GKTtL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 126 (183)
...+.|+|++|+|||+|+..+.+.+.....-..+.|+++. ++...+...+... ....+.+... .+
T Consensus 130 ~n~l~lyG~~G~GKTHLl~ai~~~l~~~~~~~~v~yi~~~------~f~~~~~~~~~~~--------~~~~f~~~~~-~~ 194 (440)
T PRK14088 130 YNPLFIYGGVGLGKTHLLQSIGNYVVQNEPDLRVMYITSE------KFLNDLVDSMKEG--------KLNEFREKYR-KK 194 (440)
T ss_pred CCeEEEEcCCCCcHHHHHHHHHHHHHHhCCCCeEEEEEHH------HHHHHHHHHHhcc--------cHHHHHHHHH-hc
Confidence 3469999999999999999999988764222346666542 3444454443221 1122333332 34
Q ss_pred eEEEEEeCCCCc
Q 035585 127 MILVILDNIWKY 138 (183)
Q Consensus 127 ~~llvlD~~~~~ 138 (183)
.-+|+|||++..
T Consensus 195 ~dvLlIDDi~~l 206 (440)
T PRK14088 195 VDVLLIDDVQFL 206 (440)
T ss_pred CCEEEEechhhh
Confidence 668999999854
No 181
>PRK10636 putative ABC transporter ATP-binding protein; Provisional
Probab=98.24 E-value=7.2e-06 Score=70.34 Aligned_cols=126 Identities=18% Similarity=0.199 Sum_probs=67.1
Q ss_pred CccEEEEEeCCCCcHHHHHHHHHhHHhhhh---ccc---ceEEEEecCCc--------CHHH------------HHHHHH
Q 035585 46 NVNIVGVYGMGGIGKTTLVKEFARQASEEK---LFD---QVVFSEVSQTP--------DIKK------------IHGEIA 99 (183)
Q Consensus 46 ~~~~v~i~G~~G~GKTtL~~~~~~~~~~~~---~~~---~~~~~~~~~~~--------~~~~------------~~~~i~ 99 (183)
+...++|+|++|+|||||++.+........ .+. .+.|+ ++.. .... -...++
T Consensus 337 ~Ge~~~l~G~NGsGKSTLlk~l~G~~~p~~G~i~~~~~~~igy~--~Q~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L 414 (638)
T PRK10636 337 PGSRIGLLGRNGAGKSTLIKLLAGELAPVSGEIGLAKGIKLGYF--AQHQLEFLRADESPLQHLARLAPQELEQKLRDYL 414 (638)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCCCCCeEEECCCEEEEEe--cCcchhhCCccchHHHHHHHhCchhhHHHHHHHH
Confidence 456899999999999999999998764321 111 12222 2210 1111 111223
Q ss_pred HHhCCCch-------hHHHHHHHHHHHHHHhcCCeEEEEEeCCCCcccccc---cCcCCCCCCCCcEEEEEecChHHHhh
Q 035585 100 EKLGLEFS-------EEAESRRASRLYERLKKEKMILVILDNIWKYLDLET---VGIPFGDDHRGCKLLLTARDCNVLLN 169 (183)
Q Consensus 100 ~~l~~~~~-------~~~~~~~~~~~~~~~~~~~~~llvlD~~~~~~~~~~---l~~~~~~~~~~~~iiitsr~~~~~~~ 169 (183)
..++.... ..+..+.....+......++-+|++||..+..+... +...+... .| .||++|||..++..
T Consensus 415 ~~~~l~~~~~~~~~~~LSgGekqRl~La~~l~~~p~lLlLDEPt~~LD~~~~~~l~~~L~~~-~g-tvi~vSHd~~~~~~ 492 (638)
T PRK10636 415 GGFGFQGDKVTEETRRFSGGEKARLVLALIVWQRPNLLLLDEPTNHLDLDMRQALTEALIDF-EG-ALVVVSHDRHLLRS 492 (638)
T ss_pred HHcCCChhHhcCchhhCCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHHc-CC-eEEEEeCCHHHHHH
Confidence 33322110 011122222223333337889999999986654222 22222222 35 59999999999887
Q ss_pred cCCCCc
Q 035585 170 MSLCRS 175 (183)
Q Consensus 170 ~~~~~~ 175 (183)
+.+...
T Consensus 493 ~~d~i~ 498 (638)
T PRK10636 493 TTDDLY 498 (638)
T ss_pred hCCEEE
Confidence 665443
No 182
>cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup. This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.24 E-value=5.4e-06 Score=61.41 Aligned_cols=27 Identities=30% Similarity=0.409 Sum_probs=23.3
Q ss_pred CccEEEEEeCCCCcHHHHHHHHHhHHh
Q 035585 46 NVNIVGVYGMGGIGKTTLVKEFARQAS 72 (183)
Q Consensus 46 ~~~~v~i~G~~G~GKTtL~~~~~~~~~ 72 (183)
+...++|.|++|+|||||++.+...+.
T Consensus 25 ~Ge~~~i~G~nGsGKSTLl~~l~G~~~ 51 (213)
T cd03259 25 PGEFLALLGPSGCGKTTLLRLIAGLER 51 (213)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCCC
Confidence 457899999999999999999987653
No 183
>cd03243 ABC_MutS_homologs The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, and recognition of specific DNA stru
Probab=98.23 E-value=1e-06 Score=64.83 Aligned_cols=23 Identities=17% Similarity=0.187 Sum_probs=20.9
Q ss_pred ccEEEEEeCCCCcHHHHHHHHHh
Q 035585 47 VNIVGVYGMGGIGKTTLVKEFAR 69 (183)
Q Consensus 47 ~~~v~i~G~~G~GKTtL~~~~~~ 69 (183)
...++|+|++|+||||+++.+..
T Consensus 29 ~~~~~l~G~Ng~GKStll~~i~~ 51 (202)
T cd03243 29 GRLLLITGPNMGGKSTYLRSIGL 51 (202)
T ss_pred CeEEEEECCCCCccHHHHHHHHH
Confidence 36899999999999999999984
No 184
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=98.23 E-value=8e-06 Score=65.31 Aligned_cols=89 Identities=16% Similarity=0.155 Sum_probs=52.3
Q ss_pred CccEEEEEeCCCCcHHHHHHHHHhHHhhhhcccceEEEEecCC-cCHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHHhc
Q 035585 46 NVNIVGVYGMGGIGKTTLVKEFARQASEEKLFDQVVFSEVSQT-PDIKKIHGEIAEKLGLEFSEEAESRRASRLYERLKK 124 (183)
Q Consensus 46 ~~~~v~i~G~~G~GKTtL~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~ 124 (183)
+..+++++|++|+||||++..+...+....-...+.++..... ..-.+.+....+.++.+.............+..+
T Consensus 136 ~g~ii~lvGptGvGKTTtiakLA~~~~~~~G~~~V~lit~D~~R~ga~EqL~~~a~~~gv~~~~~~~~~~l~~~l~~l-- 213 (374)
T PRK14722 136 RGGVFALMGPTGVGKTTTTAKLAARCVMRFGASKVALLTTDSYRIGGHEQLRIFGKILGVPVHAVKDGGDLQLALAEL-- 213 (374)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEecccccccHHHHHHHHHHHcCCceEecCCcccHHHHHHHh--
Confidence 3578999999999999999999987654311124555554432 2344555555666655443322222223333333
Q ss_pred CCeEEEEEeCCC
Q 035585 125 EKMILVILDNIW 136 (183)
Q Consensus 125 ~~~~llvlD~~~ 136 (183)
.+.-+++||.+.
T Consensus 214 ~~~DlVLIDTaG 225 (374)
T PRK14722 214 RNKHMVLIDTIG 225 (374)
T ss_pred cCCCEEEEcCCC
Confidence 344666688775
No 185
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=98.23 E-value=3.1e-06 Score=73.40 Aligned_cols=104 Identities=14% Similarity=0.175 Sum_probs=58.6
Q ss_pred cccccchHHHHHHHHHHhcc---------CCccEEEEEeCCCCcHHHHHHHHHhHHhhhhcccceEEEEecCCcCHHHHH
Q 035585 25 YEAFKSRLSTLKSIQDALTD---------VNVNIVGVYGMGGIGKTTLVKEFARQASEEKLFDQVVFSEVSQTPDIKKIH 95 (183)
Q Consensus 25 ~~~~~gR~~~l~~l~~~l~~---------~~~~~v~i~G~~G~GKTtL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 95 (183)
...++|-+..++.+.+.+.. .+...++++||+|+|||.+|+.++..+.. ..+.++++.-....
T Consensus 457 ~~~ViGQ~~ai~~l~~~i~~~~~gl~~~~kp~~~~Lf~GP~GvGKT~lAk~LA~~l~~-----~~i~id~se~~~~~--- 528 (758)
T PRK11034 457 KMLVFGQDKAIEALTEAIKMSRAGLGHEHKPVGSFLFAGPTGVGKTEVTVQLSKALGI-----ELLRFDMSEYMERH--- 528 (758)
T ss_pred cceEeCcHHHHHHHHHHHHHHhccccCCCCCcceEEEECCCCCCHHHHHHHHHHHhCC-----CcEEeechhhcccc---
Confidence 34567778888877777651 12346899999999999999999887632 23344444322111
Q ss_pred HHHHHHhCCCchhHHHHHHHHHHHHHHhcCCeEEEEEeCCCCc
Q 035585 96 GEIAEKLGLEFSEEAESRRASRLYERLKKEKMILVILDNIWKY 138 (183)
Q Consensus 96 ~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~llvlD~~~~~ 138 (183)
.+.+-++.+ +..........+...+.....-+|+|||++..
T Consensus 529 -~~~~LiG~~-~gyvg~~~~g~L~~~v~~~p~sVlllDEieka 569 (758)
T PRK11034 529 -TVSRLIGAP-PGYVGFDQGGLLTDAVIKHPHAVLLLDEIEKA 569 (758)
T ss_pred -cHHHHcCCC-CCcccccccchHHHHHHhCCCcEEEeccHhhh
Confidence 111112211 11100111112333344455679999999866
No 186
>PRK14087 dnaA chromosomal replication initiation protein; Provisional
Probab=98.23 E-value=2e-06 Score=70.73 Aligned_cols=103 Identities=16% Similarity=0.164 Sum_probs=58.3
Q ss_pred ccEEEEEeCCCCcHHHHHHHHHhHHhhhhcccceEEEEecCCcCHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHHhcCC
Q 035585 47 VNIVGVYGMGGIGKTTLVKEFARQASEEKLFDQVVFSEVSQTPDIKKIHGEIAEKLGLEFSEEAESRRASRLYERLKKEK 126 (183)
Q Consensus 47 ~~~v~i~G~~G~GKTtL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 126 (183)
..-+.|+|++|+|||+|+..+.+.+........++|++.. ++...+...+... ......+...+ ..
T Consensus 141 ~npl~i~G~~G~GKTHLl~Ai~~~l~~~~~~~~v~yv~~~------~f~~~~~~~l~~~------~~~~~~~~~~~--~~ 206 (450)
T PRK14087 141 YNPLFIYGESGMGKTHLLKAAKNYIESNFSDLKVSYMSGD------EFARKAVDILQKT------HKEIEQFKNEI--CQ 206 (450)
T ss_pred cCceEEECCCCCcHHHHHHHHHHHHHHhCCCCeEEEEEHH------HHHHHHHHHHHHh------hhHHHHHHHHh--cc
Confidence 3458999999999999999999977654223345554442 3444554443211 01223344444 34
Q ss_pred eEEEEEeCCCCccc----ccccCcCCCC-CCCCcEEEEEecC
Q 035585 127 MILVILDNIWKYLD----LETVGIPFGD-DHRGCKLLLTARD 163 (183)
Q Consensus 127 ~~llvlD~~~~~~~----~~~l~~~~~~-~~~~~~iiitsr~ 163 (183)
.-+|||||++.... .+.+...++. ...+..+|+||..
T Consensus 207 ~dvLiIDDiq~l~~k~~~~e~lf~l~N~~~~~~k~iIltsd~ 248 (450)
T PRK14087 207 NDVLIIDDVQFLSYKEKTNEIFFTIFNNFIENDKQLFFSSDK 248 (450)
T ss_pred CCEEEEeccccccCCHHHHHHHHHHHHHHHHcCCcEEEECCC
Confidence 55899999985531 2223233322 1224467777653
No 187
>COG3899 Predicted ATPase [General function prediction only]
Probab=98.23 E-value=1.8e-05 Score=69.77 Aligned_cols=47 Identities=28% Similarity=0.401 Sum_probs=42.0
Q ss_pred ccchHHHHHHHHHHhc---cCCccEEEEEeCCCCcHHHHHHHHHhHHhhh
Q 035585 28 FKSRLSTLKSIQDALT---DVNVNIVGVYGMGGIGKTTLVKEFARQASEE 74 (183)
Q Consensus 28 ~~gR~~~l~~l~~~l~---~~~~~~v~i~G~~G~GKTtL~~~~~~~~~~~ 74 (183)
++||+.+++.|...+. .....++.|.|.+|+|||++++.+......+
T Consensus 2 l~GRe~ev~~Ll~~f~~v~~g~~~~~lv~G~sGIGKsalv~ev~~~i~~~ 51 (849)
T COG3899 2 LYGRETELAQLLAAFDRVSKGRGEVVLVAGESGIGKSALVNEVHKPITQQ 51 (849)
T ss_pred CCchHhHHHHHHHHHHHHhCCCeEEEEEeecCCCcHHHHHHHHHHHHhcc
Confidence 6899999999999887 5566799999999999999999999888765
No 188
>PRK09544 znuC high-affinity zinc transporter ATPase; Reviewed
Probab=98.23 E-value=6.1e-06 Score=62.82 Aligned_cols=27 Identities=30% Similarity=0.409 Sum_probs=23.8
Q ss_pred CccEEEEEeCCCCcHHHHHHHHHhHHh
Q 035585 46 NVNIVGVYGMGGIGKTTLVKEFARQAS 72 (183)
Q Consensus 46 ~~~~v~i~G~~G~GKTtL~~~~~~~~~ 72 (183)
+...++|.|++|+|||||++.++..+.
T Consensus 29 ~Ge~~~I~G~NGsGKSTLl~~i~Gl~~ 55 (251)
T PRK09544 29 PGKILTLLGPNGAGKSTLVRVVLGLVA 55 (251)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCCC
Confidence 457899999999999999999987654
No 189
>TIGR01188 drrA daunorubicin resistance ABC transporter ATP-binding subunit. This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc.
Probab=98.23 E-value=5.4e-06 Score=64.78 Aligned_cols=27 Identities=26% Similarity=0.439 Sum_probs=23.4
Q ss_pred CccEEEEEeCCCCcHHHHHHHHHhHHh
Q 035585 46 NVNIVGVYGMGGIGKTTLVKEFARQAS 72 (183)
Q Consensus 46 ~~~~v~i~G~~G~GKTtL~~~~~~~~~ 72 (183)
+..+++|.|++|+|||||++.+...+.
T Consensus 18 ~Ge~~~l~G~NGaGKSTLl~~l~Gl~~ 44 (302)
T TIGR01188 18 EGEVFGFLGPNGAGKTTTIRMLTTLLR 44 (302)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCCC
Confidence 457899999999999999999987653
No 190
>cd03237 ABC_RNaseL_inhibitor_domain2 The ATPase domain 2 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=98.22 E-value=4.8e-06 Score=63.23 Aligned_cols=128 Identities=19% Similarity=0.239 Sum_probs=65.3
Q ss_pred CccEEEEEeCCCCcHHHHHHHHHhHHhhhh---ccc--ceEEEEec----CCcCHHHHH--------------HHHHHHh
Q 035585 46 NVNIVGVYGMGGIGKTTLVKEFARQASEEK---LFD--QVVFSEVS----QTPDIKKIH--------------GEIAEKL 102 (183)
Q Consensus 46 ~~~~v~i~G~~G~GKTtL~~~~~~~~~~~~---~~~--~~~~~~~~----~~~~~~~~~--------------~~i~~~l 102 (183)
...+++|+|++|+|||||++.+...+.... .+. .+.|+.-. ...+..+.. ..+++.+
T Consensus 24 ~Ge~~~i~G~NGsGKSTLlk~L~G~~~p~~G~i~~~g~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~l~~l 103 (246)
T cd03237 24 ESEVIGILGPNGIGKTTFIKMLAGVLKPDEGDIEIELDTVSYKPQYIKADYEGTVRDLLSSITKDFYTHPYFKTEIAKPL 103 (246)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCcCCCCeEEECCceEEEecccccCCCCCCHHHHHHHHhhhccccHHHHHHHHHHc
Confidence 346899999999999999999988764321 111 12222110 011122211 1122222
Q ss_pred CCCc------hhHHHHHHHHHHHHHHhcCCeEEEEEeCCCCcccccc---cCcCCCCC--CCCcEEEEEecChHHHhhcC
Q 035585 103 GLEF------SEEAESRRASRLYERLKKEKMILVILDNIWKYLDLET---VGIPFGDD--HRGCKLLLTARDCNVLLNMS 171 (183)
Q Consensus 103 ~~~~------~~~~~~~~~~~~~~~~~~~~~~llvlD~~~~~~~~~~---l~~~~~~~--~~~~~iiitsr~~~~~~~~~ 171 (183)
+... ...+..+.....+......++-++++||.....+... +...+... ..+..+|++||+...+..+.
T Consensus 104 ~l~~~~~~~~~~LSgGe~qrv~iaraL~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiiivsHd~~~~~~~~ 183 (246)
T cd03237 104 QIEQILDREVPELSGGELQRVAIAACLSKDADIYLLDEPSAYLDVEQRLMASKVIRRFAENNEKTAFVVEHDIIMIDYLA 183 (246)
T ss_pred CCHHHhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhC
Confidence 2210 0011111111222222237889999999875543222 22222211 23667999999998877654
Q ss_pred CC
Q 035585 172 LC 173 (183)
Q Consensus 172 ~~ 173 (183)
..
T Consensus 184 d~ 185 (246)
T cd03237 184 DR 185 (246)
T ss_pred CE
Confidence 43
No 191
>PLN00020 ribulose bisphosphate carboxylase/oxygenase activase -RuBisCO activase (RCA); Provisional
Probab=98.22 E-value=4.8e-06 Score=66.02 Aligned_cols=30 Identities=23% Similarity=0.292 Sum_probs=26.2
Q ss_pred CCccEEEEEeCCCCcHHHHHHHHHhHHhhh
Q 035585 45 VNVNIVGVYGMGGIGKTTLVKEFARQASEE 74 (183)
Q Consensus 45 ~~~~~v~i~G~~G~GKTtL~~~~~~~~~~~ 74 (183)
..+..++||||+|+|||.+++.++.++...
T Consensus 146 k~PlgllL~GPPGcGKTllAraiA~elg~~ 175 (413)
T PLN00020 146 KVPLILGIWGGKGQGKSFQCELVFKKMGIE 175 (413)
T ss_pred CCCeEEEeeCCCCCCHHHHHHHHHHHcCCC
Confidence 456789999999999999999999987653
No 192
>KOG1969 consensus DNA replication checkpoint protein CHL12/CTF18 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=98.22 E-value=4.5e-06 Score=70.70 Aligned_cols=76 Identities=24% Similarity=0.239 Sum_probs=53.0
Q ss_pred CCccEEEEEeCCCCcHHHHHHHHHhHHhhhhcccceEEEEecCCcCHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHH-h
Q 035585 45 VNVNIVGVYGMGGIGKTTLVKEFARQASEEKLFDQVVFSEVSQTPDIKKIHGEIAEKLGLEFSEEAESRRASRLYERL-K 123 (183)
Q Consensus 45 ~~~~~v~i~G~~G~GKTtL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~-~ 123 (183)
....+++++|++|.||||||.-++.+-. -.++-+|++...+...+-..|.+.+.. ...+ .
T Consensus 324 P~kKilLL~GppGlGKTTLAHViAkqaG-----YsVvEINASDeRt~~~v~~kI~~avq~--------------~s~l~a 384 (877)
T KOG1969|consen 324 PPKKILLLCGPPGLGKTTLAHVIAKQAG-----YSVVEINASDERTAPMVKEKIENAVQN--------------HSVLDA 384 (877)
T ss_pred CccceEEeecCCCCChhHHHHHHHHhcC-----ceEEEecccccccHHHHHHHHHHHHhh--------------cccccc
Confidence 4557899999999999999988877522 247788888876665555555433221 1112 2
Q ss_pred cCCeEEEEEeCCCCcc
Q 035585 124 KEKMILVILDNIWKYL 139 (183)
Q Consensus 124 ~~~~~llvlD~~~~~~ 139 (183)
..++..||+||+|...
T Consensus 385 dsrP~CLViDEIDGa~ 400 (877)
T KOG1969|consen 385 DSRPVCLVIDEIDGAP 400 (877)
T ss_pred CCCcceEEEecccCCc
Confidence 3789999999998653
No 193
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=98.21 E-value=2.1e-05 Score=63.20 Aligned_cols=89 Identities=18% Similarity=0.281 Sum_probs=51.5
Q ss_pred CccEEEEEeCCCCcHHHHHHHHHhHHhhhhcccceEEEEecCCc-CHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHHhc
Q 035585 46 NVNIVGVYGMGGIGKTTLVKEFARQASEEKLFDQVVFSEVSQTP-DIKKIHGEIAEKLGLEFSEEAESRRASRLYERLKK 124 (183)
Q Consensus 46 ~~~~v~i~G~~G~GKTtL~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~ 124 (183)
+++.++|+|++|+||||++..++..+..+ ...+.++.+.... ...+.+...++.++.+.........+...+..+..
T Consensus 240 ~~~vI~LVGptGvGKTTTiaKLA~~L~~~--GkkVglI~aDt~RiaAvEQLk~yae~lgipv~v~~d~~~L~~aL~~lk~ 317 (436)
T PRK11889 240 EVQTIALIGPTGVGKTTTLAKMAWQFHGK--KKTVGFITTDHSRIGTVQQLQDYVKTIGFEVIAVRDEAAMTRALTYFKE 317 (436)
T ss_pred CCcEEEEECCCCCcHHHHHHHHHHHHHHc--CCcEEEEecCCcchHHHHHHHHHhhhcCCcEEecCCHHHHHHHHHHHHh
Confidence 45789999999999999999999887644 2345566655432 33344445555555443322222222333333432
Q ss_pred -CCeEEEEEeCCC
Q 035585 125 -EKMILVILDNIW 136 (183)
Q Consensus 125 -~~~~llvlD~~~ 136 (183)
.+.-+|++|-+.
T Consensus 318 ~~~~DvVLIDTaG 330 (436)
T PRK11889 318 EARVDYILIDTAG 330 (436)
T ss_pred ccCCCEEEEeCcc
Confidence 234577777654
No 194
>cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds. Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages.
Probab=98.21 E-value=3.6e-06 Score=62.67 Aligned_cols=27 Identities=33% Similarity=0.505 Sum_probs=23.4
Q ss_pred CccEEEEEeCCCCcHHHHHHHHHhHHh
Q 035585 46 NVNIVGVYGMGGIGKTTLVKEFARQAS 72 (183)
Q Consensus 46 ~~~~v~i~G~~G~GKTtL~~~~~~~~~ 72 (183)
+..+++|+|++|+|||||++.++....
T Consensus 27 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~~ 53 (220)
T cd03263 27 KGEIFGLLGHNGAGKTTTLKMLTGELR 53 (220)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCCC
Confidence 456899999999999999999987653
No 195
>KOG0736 consensus Peroxisome assembly factor 2 containing the AAA+-type ATPase domain [Posttranslational modification, protein turnover, chaperones]
Probab=98.21 E-value=6e-06 Score=70.36 Aligned_cols=72 Identities=21% Similarity=0.316 Sum_probs=50.8
Q ss_pred ccEEEEEeCCCCcHHHHHHHHHhHHhhhhcccceEEEEecCCcCHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHHhcCC
Q 035585 47 VNIVGVYGMGGIGKTTLVKEFARQASEEKLFDQVVFSEVSQTPDIKKIHGEIAEKLGLEFSEEAESRRASRLYERLKKEK 126 (183)
Q Consensus 47 ~~~v~i~G~~G~GKTtL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 126 (183)
..-|++|||+|+|||.||++++.+..-. |+.+... . ++.... ...++.++.++++.++-.
T Consensus 705 RSGILLYGPPGTGKTLlAKAVATEcsL~-------FlSVKGP-E---LLNMYV---------GqSE~NVR~VFerAR~A~ 764 (953)
T KOG0736|consen 705 RSGILLYGPPGTGKTLLAKAVATECSLN-------FLSVKGP-E---LLNMYV---------GQSEENVREVFERARSAA 764 (953)
T ss_pred cceeEEECCCCCchHHHHHHHHhhceee-------EEeecCH-H---HHHHHh---------cchHHHHHHHHHHhhccC
Confidence 3469999999999999999999875543 3333221 1 111111 123556788899898889
Q ss_pred eEEEEEeCCCCc
Q 035585 127 MILVILDNIWKY 138 (183)
Q Consensus 127 ~~llvlD~~~~~ 138 (183)
+-+|.|||+|++
T Consensus 765 PCVIFFDELDSl 776 (953)
T KOG0736|consen 765 PCVIFFDELDSL 776 (953)
T ss_pred CeEEEecccccc
Confidence 999999999865
No 196
>COG4615 PvdE ABC-type siderophore export system, fused ATPase and permease components [Secondary metabolites biosynthesis, transport, and catabolism / Inorganic ion transport and metabolism]
Probab=98.21 E-value=2.4e-06 Score=67.96 Aligned_cols=29 Identities=24% Similarity=0.245 Sum_probs=25.0
Q ss_pred CccEEEEEeCCCCcHHHHHHHHHhHHhhh
Q 035585 46 NVNIVGVYGMGGIGKTTLVKEFARQASEE 74 (183)
Q Consensus 46 ~~~~v~i~G~~G~GKTtL~~~~~~~~~~~ 74 (183)
+..+|.|+|.+|+||||+++.+...++.+
T Consensus 348 rGelvFliG~NGsGKST~~~LLtGL~~Pq 376 (546)
T COG4615 348 RGELVFLIGGNGSGKSTLAMLLTGLYQPQ 376 (546)
T ss_pred cCcEEEEECCCCCcHHHHHHHHhcccCCC
Confidence 45689999999999999999998776654
No 197
>TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein.
Probab=98.21 E-value=3.8e-06 Score=62.35 Aligned_cols=27 Identities=26% Similarity=0.326 Sum_probs=23.3
Q ss_pred CccEEEEEeCCCCcHHHHHHHHHhHHh
Q 035585 46 NVNIVGVYGMGGIGKTTLVKEFARQAS 72 (183)
Q Consensus 46 ~~~~v~i~G~~G~GKTtL~~~~~~~~~ 72 (183)
+...++|.|++|+|||||++.++..+.
T Consensus 28 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~~ 54 (216)
T TIGR00960 28 KGEMVFLVGHSGAGKSTFLKLILGIEK 54 (216)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 457899999999999999999986543
No 198
>COG3910 Predicted ATPase [General function prediction only]
Probab=98.21 E-value=5.5e-06 Score=59.59 Aligned_cols=27 Identities=30% Similarity=0.388 Sum_probs=23.0
Q ss_pred CCccEEEEEeCCCCcHHHHHHHHHhHH
Q 035585 45 VNVNIVGVYGMGGIGKTTLVKEFARQA 71 (183)
Q Consensus 45 ~~~~~v~i~G~~G~GKTtL~~~~~~~~ 71 (183)
=+.++..|+|.+|+|||||+..++-..
T Consensus 35 F~apIT~i~GENGsGKSTLLEaiA~~~ 61 (233)
T COG3910 35 FRAPITFITGENGSGKSTLLEAIAAGM 61 (233)
T ss_pred ccCceEEEEcCCCccHHHHHHHHHhhc
Confidence 356899999999999999999997543
No 199
>PRK14269 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.20 E-value=1.1e-05 Score=61.18 Aligned_cols=26 Identities=31% Similarity=0.566 Sum_probs=22.9
Q ss_pred CccEEEEEeCCCCcHHHHHHHHHhHH
Q 035585 46 NVNIVGVYGMGGIGKTTLVKEFARQA 71 (183)
Q Consensus 46 ~~~~v~i~G~~G~GKTtL~~~~~~~~ 71 (183)
+...++|+|++|+|||||++.++...
T Consensus 27 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 52 (246)
T PRK14269 27 QNKITALIGASGCGKSTFLRCFNRMN 52 (246)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhccc
Confidence 45789999999999999999998754
No 200
>cd03282 ABC_MSH4_euk MutS4 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=98.20 E-value=3.6e-06 Score=62.11 Aligned_cols=118 Identities=15% Similarity=0.084 Sum_probs=58.1
Q ss_pred CccEEEEEeCCCCcHHHHHHHHHhHHhhhhcccceEEEEecCCcCHHHHHHHHHHHhCCCchh-----HHHHHHHHHHHH
Q 035585 46 NVNIVGVYGMGGIGKTTLVKEFARQASEEKLFDQVVFSEVSQTPDIKKIHGEIAEKLGLEFSE-----EAESRRASRLYE 120 (183)
Q Consensus 46 ~~~~v~i~G~~G~GKTtL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~-----~~~~~~~~~~~~ 120 (183)
..++++|+|++|.||||+++.+....--.. .. .++.+. .....++..+...+...... .-..+ ..++..
T Consensus 28 ~~~~~~l~G~n~~GKstll~~i~~~~~la~-~G--~~vpa~--~~~l~~~d~I~~~~~~~d~~~~~~S~fs~e-~~~~~~ 101 (204)
T cd03282 28 SSRFHIITGPNMSGKSTYLKQIALLAIMAQ-IG--CFVPAE--YATLPIFNRLLSRLSNDDSMERNLSTFASE-MSETAY 101 (204)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHHHH-cC--CCcchh--hcCccChhheeEecCCccccchhhhHHHHH-HHHHHH
Confidence 347899999999999999999864432210 00 011110 00011112222222111000 00011 111222
Q ss_pred HH-hcCCeEEEEEeCCCCcc---c----ccccCcCCCCCCCCcEEEEEecChHHHhhcC
Q 035585 121 RL-KKEKMILVILDNIWKYL---D----LETVGIPFGDDHRGCKLLLTARDCNVLLNMS 171 (183)
Q Consensus 121 ~~-~~~~~~llvlD~~~~~~---~----~~~l~~~~~~~~~~~~iiitsr~~~~~~~~~ 171 (183)
.+ ...++-++++||+.... + ...+...+.. .++.+|++||+.++.....
T Consensus 102 il~~~~~~~lvllDE~~~gt~~~~~~~l~~~il~~l~~--~~~~~i~~TH~~~l~~~~~ 158 (204)
T cd03282 102 ILDYADGDSLVLIDELGRGTSSADGFAISLAILECLIK--KESTVFFATHFRDIAAILG 158 (204)
T ss_pred HHHhcCCCcEEEeccccCCCCHHHHHHHHHHHHHHHHh--cCCEEEEECChHHHHHHhh
Confidence 12 12678899999985432 1 1112222222 2778999999999987554
No 201
>COG4618 ArpD ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only]
Probab=98.19 E-value=2.3e-06 Score=69.82 Aligned_cols=48 Identities=21% Similarity=0.243 Sum_probs=31.4
Q ss_pred CCeEEEEEeCCCCccc----ccccCcCCCCCCCCcEEEEEecChHHHhhcCC
Q 035585 125 EKMILVILDNIWKYLD----LETVGIPFGDDHRGCKLLLTARDCNVLLNMSL 172 (183)
Q Consensus 125 ~~~~llvlD~~~~~~~----~~~l~~~~~~~~~~~~iiitsr~~~~~~~~~~ 172 (183)
+.+.++|+||...-.+ ..-......-...|+.+|+.+|..+++..+..
T Consensus 489 G~P~lvVLDEPNsNLD~~GE~AL~~Ai~~~k~rG~~vvviaHRPs~L~~~Dk 540 (580)
T COG4618 489 GDPFLVVLDEPNSNLDSEGEAALAAAILAAKARGGTVVVIAHRPSALASVDK 540 (580)
T ss_pred CCCcEEEecCCCCCcchhHHHHHHHHHHHHHHcCCEEEEEecCHHHHhhcce
Confidence 7899999999864322 11112222334568889999999998875443
No 202
>PRK06067 flagellar accessory protein FlaH; Validated
Probab=98.19 E-value=1.7e-05 Score=59.69 Aligned_cols=115 Identities=17% Similarity=0.226 Sum_probs=63.8
Q ss_pred CccEEEEEeCCCCcHHHHHHHHHhHHhhhhcccceEEEEecCCcCHHHHHHHHHHHhCCCchh-----------------
Q 035585 46 NVNIVGVYGMGGIGKTTLVKEFARQASEEKLFDQVVFSEVSQTPDIKKIHGEIAEKLGLEFSE----------------- 108 (183)
Q Consensus 46 ~~~~v~i~G~~G~GKTtL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~----------------- 108 (183)
...++.|+|++|+|||+|+.++....-.. -..++|+..... ..++.+++ +.++.....
T Consensus 24 ~g~~~~i~G~~GsGKt~l~~~~~~~~~~~--g~~~~y~~~e~~--~~~~~~~~-~~~g~~~~~~~~~g~l~i~~~~~~~~ 98 (234)
T PRK06067 24 FPSLILIEGDHGTGKSVLSQQFVYGALKQ--GKKVYVITTENT--SKSYLKQM-ESVKIDISDFFLWGYLRIFPLNTEGF 98 (234)
T ss_pred CCcEEEEECCCCCChHHHHHHHHHHHHhC--CCEEEEEEcCCC--HHHHHHHH-HHCCCChhHHHhCCCceEEecccccc
Confidence 45789999999999999999997654332 346788777643 33444433 222211111
Q ss_pred ----HHHHHHHHHHHHHHhcCCeEEEEEeCCCCc---cc---ccccCcCCCC-CCCCcEEEEEecChH
Q 035585 109 ----EAESRRASRLYERLKKEKMILVILDNIWKY---LD---LETVGIPFGD-DHRGCKLLLTARDCN 165 (183)
Q Consensus 109 ----~~~~~~~~~~~~~~~~~~~~llvlD~~~~~---~~---~~~l~~~~~~-~~~~~~iiitsr~~~ 165 (183)
.........+.+.+.+.+.-++|+|++... .+ ...+...+.. ...+..+++|++...
T Consensus 99 ~~~~~~~~~ll~~l~~~i~~~~~~~iviDs~t~~~~~~~~~~~~~~l~~l~~l~~~g~tvllt~~~~~ 166 (234)
T PRK06067 99 EWNSTLANKLLELIIEFIKSKREDVIIIDSLTIFATYAEEDDILNFLTEAKNLVDLGKTILITLHPYA 166 (234)
T ss_pred ccCcchHHHHHHHHHHHHHhcCCCEEEEecHHHHHhcCCHHHHHHHHHHHHHHHhCCCEEEEEecCCc
Confidence 111223344444554457779999997622 11 1111111111 234566888887644
No 203
>PRK13543 cytochrome c biogenesis protein CcmA; Provisional
Probab=98.19 E-value=1.1e-05 Score=59.91 Aligned_cols=27 Identities=33% Similarity=0.337 Sum_probs=23.4
Q ss_pred CccEEEEEeCCCCcHHHHHHHHHhHHh
Q 035585 46 NVNIVGVYGMGGIGKTTLVKEFARQAS 72 (183)
Q Consensus 46 ~~~~v~i~G~~G~GKTtL~~~~~~~~~ 72 (183)
....++|.|++|+|||||++.+...+.
T Consensus 36 ~Ge~~~i~G~nGsGKSTLl~~i~G~~~ 62 (214)
T PRK13543 36 AGEALLVQGDNGAGKTTLLRVLAGLLH 62 (214)
T ss_pred CCCEEEEEcCCCCCHHHHHHHHhCCCC
Confidence 457899999999999999999987654
No 204
>cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity. In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.19 E-value=7.1e-06 Score=60.65 Aligned_cols=27 Identities=30% Similarity=0.404 Sum_probs=23.4
Q ss_pred CccEEEEEeCCCCcHHHHHHHHHhHHh
Q 035585 46 NVNIVGVYGMGGIGKTTLVKEFARQAS 72 (183)
Q Consensus 46 ~~~~v~i~G~~G~GKTtL~~~~~~~~~ 72 (183)
+..+++|.|++|+|||||++.+.....
T Consensus 25 ~G~~~~i~G~nGsGKSTLl~~l~G~~~ 51 (210)
T cd03269 25 KGEIFGLLGPNGAGKTTTIRMILGIIL 51 (210)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCCC
Confidence 457899999999999999999987653
No 205
>KOG2004 consensus Mitochondrial ATP-dependent protease PIM1/LON [Posttranslational modification, protein turnover, chaperones]
Probab=98.19 E-value=5.5e-06 Score=70.08 Aligned_cols=102 Identities=20% Similarity=0.258 Sum_probs=63.5
Q ss_pred cccccchHHHHHHHHHHhc------cCCccEEEEEeCCCCcHHHHHHHHHhHHhhhhcccceEEEEecCCcCHHHHHHHH
Q 035585 25 YEAFKSRLSTLKSIQDALT------DVNVNIVGVYGMGGIGKTTLVKEFARQASEEKLFDQVVFSEVSQTPDIKKIHGEI 98 (183)
Q Consensus 25 ~~~~~gR~~~l~~l~~~l~------~~~~~~v~i~G~~G~GKTtL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 98 (183)
..+.+|.++.-+++.+++. +.+..+++++||+|+|||++++.++..+..+ +| -+.+..-.+..++ +..
T Consensus 410 deDHYgm~dVKeRILEfiAV~kLrgs~qGkIlCf~GPPGVGKTSI~kSIA~ALnRk-Ff----RfSvGG~tDvAeI-kGH 483 (906)
T KOG2004|consen 410 DEDHYGMEDVKERILEFIAVGKLRGSVQGKILCFVGPPGVGKTSIAKSIARALNRK-FF----RFSVGGMTDVAEI-KGH 483 (906)
T ss_pred cccccchHHHHHHHHHHHHHHhhcccCCCcEEEEeCCCCCCcccHHHHHHHHhCCc-eE----EEeccccccHHhh-ccc
Confidence 3467888888888888775 4567899999999999999999999988776 21 1222332332221 111
Q ss_pred HHHhCCCchhHHHHHHHHHHHHHHhcCCeEEEEEeCCCCc
Q 035585 99 AEKLGLEFSEEAESRRASRLYERLKKEKMILVILDNIWKY 138 (183)
Q Consensus 99 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~llvlD~~~~~ 138 (183)
.+..-...|+ .+-+.+.... ...-+++|||+|..
T Consensus 484 RRTYVGAMPG-----kiIq~LK~v~-t~NPliLiDEvDKl 517 (906)
T KOG2004|consen 484 RRTYVGAMPG-----KIIQCLKKVK-TENPLILIDEVDKL 517 (906)
T ss_pred ceeeeccCCh-----HHHHHHHhhC-CCCceEEeehhhhh
Confidence 1111122222 2233444444 56678889999855
No 206
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=98.19 E-value=3.3e-06 Score=72.59 Aligned_cols=131 Identities=17% Similarity=0.194 Sum_probs=74.7
Q ss_pred CcccccchHHHHHHHHHHhc---------cCCccEEEEEeCCCCcHHHHHHHHHhHHhhhhcccceEEEEecCCcCHHHH
Q 035585 24 GYEAFKSRLSTLKSIQDALT---------DVNVNIVGVYGMGGIGKTTLVKEFARQASEEKLFDQVVFSEVSQTPDIKKI 94 (183)
Q Consensus 24 ~~~~~~gR~~~l~~l~~~l~---------~~~~~~v~i~G~~G~GKTtL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 94 (183)
.....+|-+..+..+.+.+. +.+...++..||+|+|||-||++++..+... -...+-+++| ++
T Consensus 489 L~~rViGQd~AV~avs~aIrraRaGL~dp~rPigsFlF~GPTGVGKTELAkaLA~~Lfg~--e~aliR~DMS------Ey 560 (786)
T COG0542 489 LKKRVIGQDEAVEAVSDAIRRARAGLGDPNRPIGSFLFLGPTGVGKTELAKALAEALFGD--EQALIRIDMS------EY 560 (786)
T ss_pred HhcceeChHHHHHHHHHHHHHHhcCCCCCCCCceEEEeeCCCcccHHHHHHHHHHHhcCC--CccceeechH------HH
Confidence 34456777888877777664 2344578889999999999999999987643 1222333333 22
Q ss_pred HHHH-HHHhCCCchhHHHHHHHHHHHHHHhcCCeEEEEEeCCCCc--ccccccCcCCCC-----------CCCCcEEEEE
Q 035585 95 HGEI-AEKLGLEFSEEAESRRASRLYERLKKEKMILVILDNIWKY--LDLETVGIPFGD-----------DHRGCKLLLT 160 (183)
Q Consensus 95 ~~~i-~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~llvlD~~~~~--~~~~~l~~~~~~-----------~~~~~~iiit 160 (183)
.... .++|-...|+--..+..-.+.+.++.+.-.+|+|||++.. +-++-++..+++ ....+.||.|
T Consensus 561 ~EkHsVSrLIGaPPGYVGyeeGG~LTEaVRr~PySViLlDEIEKAHpdV~nilLQVlDdGrLTD~~Gr~VdFrNtiIImT 640 (786)
T COG0542 561 MEKHSVSRLIGAPPGYVGYEEGGQLTEAVRRKPYSVILLDEIEKAHPDVFNLLLQVLDDGRLTDGQGRTVDFRNTIIIMT 640 (786)
T ss_pred HHHHHHHHHhCCCCCCceeccccchhHhhhcCCCeEEEechhhhcCHHHHHHHHHHhcCCeeecCCCCEEecceeEEEEe
Confidence 2222 2223222233111112234556666344459999999744 223333343333 2456777777
Q ss_pred ec
Q 035585 161 AR 162 (183)
Q Consensus 161 sr 162 (183)
|.
T Consensus 641 SN 642 (786)
T COG0542 641 SN 642 (786)
T ss_pred cc
Confidence 76
No 207
>cd03287 ABC_MSH3_euk MutS3 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=98.19 E-value=2.2e-06 Score=63.97 Aligned_cols=111 Identities=14% Similarity=0.104 Sum_probs=58.0
Q ss_pred CccEEEEEeCCCCcHHHHHHHHHh-HHhhh-hccc----------ceEEEEecCCcCHHHHHHHHHHHhCCCchhHHHHH
Q 035585 46 NVNIVGVYGMGGIGKTTLVKEFAR-QASEE-KLFD----------QVVFSEVSQTPDIKKIHGEIAEKLGLEFSEEAESR 113 (183)
Q Consensus 46 ~~~~v~i~G~~G~GKTtL~~~~~~-~~~~~-~~~~----------~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~ 113 (183)
+.+.++|.|++|.||||+++.+.. .+..+ ..+. ..++..+....++..-.+.+ ..+..
T Consensus 30 ~g~~~~itG~N~~GKStll~~i~~~~~la~~G~~v~a~~~~~~~~~~i~~~~~~~d~~~~~~StF----------~~e~~ 99 (222)
T cd03287 30 GGYCQIITGPNMGGKSSYIRQVALITIMAQIGSFVPASSATLSIFDSVLTRMGASDSIQHGMSTF----------MVELS 99 (222)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHHHhCCCEEEcCceEEeccceEEEEecCccccccccchH----------HHHHH
Confidence 457889999999999999999876 33222 0000 11222222222211100011 01111
Q ss_pred HHHHHHHHHhcCCeEEEEEeCCCCccc-------ccccCcCCCCCCCCcEEEEEecChHHHhh
Q 035585 114 RASRLYERLKKEKMILVILDNIWKYLD-------LETVGIPFGDDHRGCKLLLTARDCNVLLN 169 (183)
Q Consensus 114 ~~~~~~~~~~~~~~~llvlD~~~~~~~-------~~~l~~~~~~~~~~~~iiitsr~~~~~~~ 169 (183)
.+..+++. ..++.++++||+....+ ...+...+... .++.+|++||+.++...
T Consensus 100 ~~~~il~~--~~~~sLvllDE~~~gT~~~d~~~i~~~il~~l~~~-~~~~~i~~TH~~~l~~~ 159 (222)
T cd03287 100 ETSHILSN--CTSRSLVILDELGRGTSTHDGIAIAYATLHYLLEE-KKCLVLFVTHYPSLGEI 159 (222)
T ss_pred HHHHHHHh--CCCCeEEEEccCCCCCChhhHHHHHHHHHHHHHhc-cCCeEEEEcccHHHHHH
Confidence 12222222 26799999999743211 11122222222 57889999999998653
No 208
>PRK08533 flagellar accessory protein FlaH; Reviewed
Probab=98.19 E-value=3.8e-05 Score=57.72 Aligned_cols=88 Identities=13% Similarity=0.175 Sum_probs=49.9
Q ss_pred CccEEEEEeCCCCcHHHHHHHHHhHHhhhhcccceEEEEecCCcCHHHHHHHHHHHhCCCch------------------
Q 035585 46 NVNIVGVYGMGGIGKTTLVKEFARQASEEKLFDQVVFSEVSQTPDIKKIHGEIAEKLGLEFS------------------ 107 (183)
Q Consensus 46 ~~~~v~i~G~~G~GKTtL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~------------------ 107 (183)
+...++|.|++|+|||||+.+++.....+ -..++|+.... ...++.+.+ ..++....
T Consensus 23 ~g~~~~i~G~~G~GKTtl~~~~~~~~~~~--g~~~~yi~~e~--~~~~~~~~~-~~~g~~~~~~~~~~~l~~~~~~~~~~ 97 (230)
T PRK08533 23 AGSLILIEGDESTGKSILSQRLAYGFLQN--GYSVSYVSTQL--TTTEFIKQM-MSLGYDINKKLISGKLLYIPVYPLLS 97 (230)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHhC--CCcEEEEeCCC--CHHHHHHHH-HHhCCchHHHhhcCcEEEEEeccccc
Confidence 34689999999999999988777765433 23466666433 333444444 22222110
Q ss_pred -hHHHHHHHHHHHHHHhcCCeEEEEEeCCCCc
Q 035585 108 -EEAESRRASRLYERLKKEKMILVILDNIWKY 138 (183)
Q Consensus 108 -~~~~~~~~~~~~~~~~~~~~~llvlD~~~~~ 138 (183)
..........+.......++-++|+|++...
T Consensus 98 ~~~~~~~~l~~il~~~~~~~~~~lVIDe~t~~ 129 (230)
T PRK08533 98 GNSEKRKFLKKLMNTRRFYEKDVIIIDSLSSL 129 (230)
T ss_pred ChHHHHHHHHHHHHHHHhcCCCEEEEECccHH
Confidence 0111222233344433356789999998653
No 209
>COG1134 TagH ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane]
Probab=98.19 E-value=1.7e-06 Score=64.50 Aligned_cols=134 Identities=17% Similarity=0.183 Sum_probs=72.0
Q ss_pred CccEEEEEeCCCCcHHHHHHHHHhHHhhhhc----ccceEEE-EecCC--cCH---HH--HHHHHH-----------HH-
Q 035585 46 NVNIVGVYGMGGIGKTTLVKEFARQASEEKL----FDQVVFS-EVSQT--PDI---KK--IHGEIA-----------EK- 101 (183)
Q Consensus 46 ~~~~v~i~G~~G~GKTtL~~~~~~~~~~~~~----~~~~~~~-~~~~~--~~~---~~--~~~~i~-----------~~- 101 (183)
+...++|+|.+|+|||||.+.++.-+.+..- -..+.|+ ..... +.+ +. +...++ ++
T Consensus 52 ~Ge~vGiiG~NGaGKSTLlkliaGi~~Pt~G~v~v~G~v~~li~lg~Gf~pelTGreNi~l~~~~~G~~~~ei~~~~~eI 131 (249)
T COG1134 52 KGERVGIIGHNGAGKSTLLKLIAGIYKPTSGKVKVTGKVAPLIELGAGFDPELTGRENIYLRGLILGLTRKEIDEKVDEI 131 (249)
T ss_pred CCCEEEEECCCCCcHHHHHHHHhCccCCCCceEEEcceEehhhhcccCCCcccchHHHHHHHHHHhCccHHHHHHHHHHH
Confidence 3457999999999999999999887765311 1112221 11111 111 00 111111 00
Q ss_pred ---------hCCCchhHHHHHHHHHHHHHHhcCCeEEEEEeCCCCccc---ccccCcCCCCC-CCCcEEEEEecChHHHh
Q 035585 102 ---------LGLEFSEEAESRRASRLYERLKKEKMILVILDNIWKYLD---LETVGIPFGDD-HRGCKLLLTARDCNVLL 168 (183)
Q Consensus 102 ---------l~~~~~~~~~~~~~~~~~~~~~~~~~~llvlD~~~~~~~---~~~l~~~~~~~-~~~~~iiitsr~~~~~~ 168 (183)
+..+...-+.....+..+.....-.+-+|++||+=...+ .......+... .++..++++|||...+.
T Consensus 132 ieFaELG~fi~~PvktYSSGM~aRLaFsia~~~~pdILllDEvlavGD~~F~~K~~~rl~e~~~~~~tiv~VSHd~~~I~ 211 (249)
T COG1134 132 IEFAELGDFIDQPVKTYSSGMYARLAFSVATHVEPDILLLDEVLAVGDAAFQEKCLERLNELVEKNKTIVLVSHDLGAIK 211 (249)
T ss_pred HHHHHHHHHhhCchhhccHHHHHHHHHhhhhhcCCCEEEEehhhhcCCHHHHHHHHHHHHHHHHcCCEEEEEECCHHHHH
Confidence 011111112222223333333346788999999754433 22222222222 33567999999999999
Q ss_pred hcCCCCcchhh
Q 035585 169 NMSLCRSEEEE 179 (183)
Q Consensus 169 ~~~~~~~~~~~ 179 (183)
.+++...+.+.
T Consensus 212 ~~Cd~~i~l~~ 222 (249)
T COG1134 212 QYCDRAIWLEH 222 (249)
T ss_pred HhcCeeEEEeC
Confidence 98887776554
No 210
>cd03217 ABC_FeS_Assembly ABC-type transport system involved in Fe-S cluster assembly, ATPase component. Biosynthesis of iron-sulfur clusters (Fe-S) depends on multiprotein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet.
Probab=98.19 E-value=3.7e-06 Score=61.80 Aligned_cols=25 Identities=28% Similarity=0.434 Sum_probs=22.7
Q ss_pred CccEEEEEeCCCCcHHHHHHHHHhH
Q 035585 46 NVNIVGVYGMGGIGKTTLVKEFARQ 70 (183)
Q Consensus 46 ~~~~v~i~G~~G~GKTtL~~~~~~~ 70 (183)
+...++|.|++|+|||||++.+...
T Consensus 25 ~Ge~~~i~G~nGsGKStLl~~l~G~ 49 (200)
T cd03217 25 KGEVHALMGPNGSGKSTLAKTIMGH 49 (200)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCC
Confidence 4578999999999999999999876
No 211
>PRK11247 ssuB aliphatic sulfonates transport ATP-binding subunit; Provisional
Probab=98.18 E-value=8.4e-06 Score=62.29 Aligned_cols=27 Identities=33% Similarity=0.469 Sum_probs=23.6
Q ss_pred CccEEEEEeCCCCcHHHHHHHHHhHHh
Q 035585 46 NVNIVGVYGMGGIGKTTLVKEFARQAS 72 (183)
Q Consensus 46 ~~~~v~i~G~~G~GKTtL~~~~~~~~~ 72 (183)
+...++|.|++|+|||||++.+...+.
T Consensus 37 ~Ge~~~I~G~NGsGKSTLlk~l~Gl~~ 63 (257)
T PRK11247 37 AGQFVAVVGRSGCGKSTLLRLLAGLET 63 (257)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence 457899999999999999999987654
No 212
>TIGR02903 spore_lon_C ATP-dependent protease, Lon family. Members of this protein family resemble the widely distributed ATP-dependent protease La, also called Lon and LonA. It resembles even more closely LonB, which is a LonA paralog found in genomes if and only if the species is capable of endospore formation (as in Bacillus subtilis, Clostridium tetani, and select other members of the Firmicutes) and expressed specifically in the forespore compartment. Members of this family are restricted to a subset of spore-forming species, and are very likely to participate in the program of endospore formation. We propose the designation LonC.
Probab=98.18 E-value=1.4e-05 Score=68.23 Aligned_cols=53 Identities=17% Similarity=0.284 Sum_probs=44.0
Q ss_pred cCCCcccccchHHHHHHHHHHhccCCccEEEEEeCCCCcHHHHHHHHHhHHhh
Q 035585 21 SNKGYEAFKSRLSTLKSIQDALTDVNVNIVGVYGMGGIGKTTLVKEFARQASE 73 (183)
Q Consensus 21 ~~~~~~~~~gR~~~l~~l~~~l~~~~~~~v~i~G~~G~GKTtL~~~~~~~~~~ 73 (183)
.|.....++|+...+..+...+.......++|+|++|+||||+|+.+++....
T Consensus 149 rp~~~~~iiGqs~~~~~l~~~ia~~~~~~vlL~Gp~GtGKTTLAr~i~~~~~~ 201 (615)
T TIGR02903 149 RPRAFSEIVGQERAIKALLAKVASPFPQHIILYGPPGVGKTTAARLALEEAKK 201 (615)
T ss_pred CcCcHHhceeCcHHHHHHHHHHhcCCCCeEEEECCCCCCHHHHHHHHHHhhhh
Confidence 35556678899999998888777666778999999999999999999877643
No 213
>PRK08939 primosomal protein DnaI; Reviewed
Probab=98.18 E-value=2.5e-05 Score=61.10 Aligned_cols=89 Identities=19% Similarity=0.257 Sum_probs=55.8
Q ss_pred chHHHHHHHHHHhcc----CCccEEEEEeCCCCcHHHHHHHHHhHHhhhhcccceEEEEecCCcCHHHHHHHHHHHhCCC
Q 035585 30 SRLSTLKSIQDALTD----VNVNIVGVYGMGGIGKTTLVKEFARQASEEKLFDQVVFSEVSQTPDIKKIHGEIAEKLGLE 105 (183)
Q Consensus 30 gR~~~l~~l~~~l~~----~~~~~v~i~G~~G~GKTtL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~ 105 (183)
+|...+.....++.+ .....+.|+|++|+|||.|+.++++.+..+ ...+.|++++ .++..+...+...
T Consensus 135 ~~~~~~~~~~~fi~~~~~~~~~~gl~L~G~~G~GKThLa~Aia~~l~~~--g~~v~~~~~~------~l~~~lk~~~~~~ 206 (306)
T PRK08939 135 DRLDALMAALDFLEAYPPGEKVKGLYLYGDFGVGKSYLLAAIANELAKK--GVSSTLLHFP------EFIRELKNSISDG 206 (306)
T ss_pred HHHHHHHHHHHHHHHhhccCCCCeEEEECCCCCCHHHHHHHHHHHHHHc--CCCEEEEEHH------HHHHHHHHHHhcC
Confidence 455555444444431 244679999999999999999999998754 3345665554 3444554433221
Q ss_pred chhHHHHHHHHHHHHHHhcCCeEEEEEeCCC
Q 035585 106 FSEEAESRRASRLYERLKKEKMILVILDNIW 136 (183)
Q Consensus 106 ~~~~~~~~~~~~~~~~~~~~~~~llvlD~~~ 136 (183)
.....+..+ .+.-||||||+.
T Consensus 207 --------~~~~~l~~l--~~~dlLiIDDiG 227 (306)
T PRK08939 207 --------SVKEKIDAV--KEAPVLMLDDIG 227 (306)
T ss_pred --------cHHHHHHHh--cCCCEEEEecCC
Confidence 112333444 467899999986
No 214
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=98.18 E-value=6.6e-06 Score=71.68 Aligned_cols=95 Identities=20% Similarity=0.245 Sum_probs=59.2
Q ss_pred CcccccchHHHHHHHHHHhcc-------------CCccEEEEEeCCCCcHHHHHHHHHhHHhhhhcccceEEEEecCCcC
Q 035585 24 GYEAFKSRLSTLKSIQDALTD-------------VNVNIVGVYGMGGIGKTTLVKEFARQASEEKLFDQVVFSEVSQTPD 90 (183)
Q Consensus 24 ~~~~~~gR~~~l~~l~~~l~~-------------~~~~~v~i~G~~G~GKTtL~~~~~~~~~~~~~~~~~~~~~~~~~~~ 90 (183)
...++.|.+..++.+.+++.. ..++.++|+|++|+|||+|++.+++..... .+.++.+.
T Consensus 176 ~~~di~G~~~~~~~l~~~i~~~~~~~~~~~~~gi~~~~giLL~GppGtGKT~laraia~~~~~~-----~i~i~~~~--- 247 (733)
T TIGR01243 176 TYEDIGGLKEAKEKIREMVELPMKHPELFEHLGIEPPKGVLLYGPPGTGKTLLAKAVANEAGAY-----FISINGPE--- 247 (733)
T ss_pred CHHHhcCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCceEEEECCCCCChHHHHHHHHHHhCCe-----EEEEecHH---
Confidence 344577899888888776531 344679999999999999999998876432 22332211
Q ss_pred HHHHHHHHHHHhCCCchhHHHHHHHHHHHHHHhcCCeEEEEEeCCCCc
Q 035585 91 IKKIHGEIAEKLGLEFSEEAESRRASRLYERLKKEKMILVILDNIWKY 138 (183)
Q Consensus 91 ~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~llvlD~~~~~ 138 (183)
+. ... .. .....+..++.......+.+|+|||++..
T Consensus 248 ---i~----~~~----~g-~~~~~l~~lf~~a~~~~p~il~iDEid~l 283 (733)
T TIGR01243 248 ---IM----SKY----YG-ESEERLREIFKEAEENAPSIIFIDEIDAI 283 (733)
T ss_pred ---Hh----ccc----cc-HHHHHHHHHHHHHHhcCCcEEEeehhhhh
Confidence 11 100 00 11223444555555567789999998754
No 215
>smart00534 MUTSac ATPase domain of DNA mismatch repair MUTS family.
Probab=98.18 E-value=1.2e-06 Score=63.55 Aligned_cols=21 Identities=24% Similarity=0.290 Sum_probs=18.7
Q ss_pred EEEEEeCCCCcHHHHHHHHHh
Q 035585 49 IVGVYGMGGIGKTTLVKEFAR 69 (183)
Q Consensus 49 ~v~i~G~~G~GKTtL~~~~~~ 69 (183)
+++|+|++|.||||+++.+.-
T Consensus 1 ~~~ltG~N~~GKst~l~~i~~ 21 (185)
T smart00534 1 VVIITGPNMGGKSTYLRQVGL 21 (185)
T ss_pred CEEEECCCCCcHHHHHHHHHH
Confidence 367999999999999999873
No 216
>COG1131 CcmA ABC-type multidrug transport system, ATPase component [Defense mechanisms]
Probab=98.17 E-value=4.1e-06 Score=65.16 Aligned_cols=28 Identities=39% Similarity=0.488 Sum_probs=24.1
Q ss_pred CccEEEEEeCCCCcHHHHHHHHHhHHhh
Q 035585 46 NVNIVGVYGMGGIGKTTLVKEFARQASE 73 (183)
Q Consensus 46 ~~~~v~i~G~~G~GKTtL~~~~~~~~~~ 73 (183)
+..++++.|++|+|||||++.+......
T Consensus 30 ~Gei~gllG~NGAGKTTllk~l~gl~~p 57 (293)
T COG1131 30 PGEIFGLLGPNGAGKTTLLKILAGLLKP 57 (293)
T ss_pred CCeEEEEECCCCCCHHHHHHHHhCCcCC
Confidence 3468999999999999999999876653
No 217
>cd03278 ABC_SMC_barmotin Barmotin is a tight junction-associated protein expressed in rat epithelial cells which is thought to have an important regulatory role in tight junction barrier function. Barmotin belongs to the SMC protein family. SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, w
Probab=98.17 E-value=8.6e-06 Score=59.77 Aligned_cols=24 Identities=17% Similarity=0.410 Sum_probs=20.8
Q ss_pred cEEEEEeCCCCcHHHHHHHHHhHH
Q 035585 48 NIVGVYGMGGIGKTTLVKEFARQA 71 (183)
Q Consensus 48 ~~v~i~G~~G~GKTtL~~~~~~~~ 71 (183)
.+++|+|++|+|||||++.+....
T Consensus 23 g~~~i~G~nGsGKStll~al~~l~ 46 (197)
T cd03278 23 GLTAIVGPNGSGKSNIIDAIRWVL 46 (197)
T ss_pred CcEEEECCCCCCHHHHHHHHHHHh
Confidence 488999999999999999987543
No 218
>TIGR03499 FlhF flagellar biosynthetic protein FlhF.
Probab=98.17 E-value=1.9e-05 Score=61.17 Aligned_cols=88 Identities=18% Similarity=0.262 Sum_probs=50.6
Q ss_pred CccEEEEEeCCCCcHHHHHHHHHhHHhhhhcccceEEEEecCC-cCHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHHhc
Q 035585 46 NVNIVGVYGMGGIGKTTLVKEFARQASEEKLFDQVVFSEVSQT-PDIKKIHGEIAEKLGLEFSEEAESRRASRLYERLKK 124 (183)
Q Consensus 46 ~~~~v~i~G~~G~GKTtL~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~ 124 (183)
...+++++|++|+||||++..++..+........+.++.+... ....+.+....+.++.+.........+...+..+.
T Consensus 193 ~~~vi~~vGptGvGKTTt~~kLa~~~~~~~g~~~V~li~~D~~r~~a~eql~~~~~~~~~p~~~~~~~~~l~~~l~~~~- 271 (282)
T TIGR03499 193 QGGVIALVGPTGVGKTTTLAKLAARFVLEHGNKKVALITTDTYRIGAVEQLKTYAKILGVPVKVARDPKELRKALDRLR- 271 (282)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHHcCCCeEEEEECCccchhHHHHHHHHHHHhCCceeccCCHHHHHHHHHHcc-
Confidence 3568999999999999999999988765311124666665543 12233334444444444332222223334444442
Q ss_pred CCeEEEEEeCC
Q 035585 125 EKMILVILDNI 135 (183)
Q Consensus 125 ~~~~llvlD~~ 135 (183)
..-+|++|.+
T Consensus 272 -~~d~vliDt~ 281 (282)
T TIGR03499 272 -DKDLILIDTA 281 (282)
T ss_pred -CCCEEEEeCC
Confidence 3468888864
No 219
>cd01123 Rad51_DMC1_radA Rad51_DMC1_radA,B. This group of recombinases includes the eukaryotic proteins RAD51, RAD55/57 and the meiosis-specific protein DMC1, and the archaeal proteins radA and radB. They are closely related to the bacterial RecA group. Rad51 proteins catalyze a similiar recombination reaction as RecA, using ATP-dependent DNA binding activity and a DNA-dependent ATPase. However, this reaction is less efficient and requires accessory proteins such as RAD55/57 .
Probab=98.17 E-value=2.6e-05 Score=58.56 Aligned_cols=91 Identities=23% Similarity=0.303 Sum_probs=53.9
Q ss_pred CccEEEEEeCCCCcHHHHHHHHHhHHhhhhc----ccceEEEEecCCcCHHHHHHHHHHHhCCCch-------------h
Q 035585 46 NVNIVGVYGMGGIGKTTLVKEFARQASEEKL----FDQVVFSEVSQTPDIKKIHGEIAEKLGLEFS-------------E 108 (183)
Q Consensus 46 ~~~~v~i~G~~G~GKTtL~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~-------------~ 108 (183)
...++.|+|++|+|||+|+.+++........ ...++|++.........+ ..++..+..... .
T Consensus 18 ~g~i~~i~G~~GsGKT~l~~~l~~~~~~~~~~~g~~~~viyi~~e~~~~~~rl-~~~~~~~~~~~~~~~~~i~~~~~~~~ 96 (235)
T cd01123 18 TGSITEIFGEFGSGKTQLCHQLAVTVQLPIELGGLEGKAVYIDTEGTFRPERL-VQIAERFGLDPEEVLDNIYVARAYNS 96 (235)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHeeCccccCCCCccEEEEeCCCCcCHHHH-HHHHHHhccChHhHhcCEEEEecCCH
Confidence 4478999999999999999999865432211 246889888765443332 222222221110 0
Q ss_pred HHHHHHHHHHHHHHhcC-CeEEEEEeCCCC
Q 035585 109 EAESRRASRLYERLKKE-KMILVILDNIWK 137 (183)
Q Consensus 109 ~~~~~~~~~~~~~~~~~-~~~llvlD~~~~ 137 (183)
......+..+...+.+. +.-+||||.+..
T Consensus 97 ~~l~~~l~~l~~~l~~~~~~~liVIDSis~ 126 (235)
T cd01123 97 DHQLQLLEELEAILIESSRIKLVIVDSVTA 126 (235)
T ss_pred HHHHHHHHHHHHHHhhcCCeeEEEEeCcHH
Confidence 11122234444455555 888999999864
No 220
>TIGR02868 CydC thiol reductant ABC exporter, CydC subunit. The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex.
Probab=98.16 E-value=5.9e-06 Score=69.34 Aligned_cols=28 Identities=25% Similarity=0.283 Sum_probs=24.0
Q ss_pred CCccEEEEEeCCCCcHHHHHHHHHhHHh
Q 035585 45 VNVNIVGVYGMGGIGKTTLVKEFARQAS 72 (183)
Q Consensus 45 ~~~~~v~i~G~~G~GKTtL~~~~~~~~~ 72 (183)
.+...++|+|++|+|||||++.+...+.
T Consensus 359 ~~G~~vaIvG~SGsGKSTLl~lL~g~~~ 386 (529)
T TIGR02868 359 PPGERVAILGPSGSGKSTLLMLLTGLLD 386 (529)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence 4557899999999999999999986554
No 221
>smart00763 AAA_PrkA PrkA AAA domain. This is a family of PrkA bacterial and archaeal serine kinases approximately 630 residues long. This is the N-terminal AAA domain.
Probab=98.16 E-value=4.4e-06 Score=66.15 Aligned_cols=47 Identities=21% Similarity=0.275 Sum_probs=40.7
Q ss_pred cccchHHHHHHHHHHhc------cCCccEEEEEeCCCCcHHHHHHHHHhHHhh
Q 035585 27 AFKSRLSTLKSIQDALT------DVNVNIVGVYGMGGIGKTTLVKEFARQASE 73 (183)
Q Consensus 27 ~~~gR~~~l~~l~~~l~------~~~~~~v~i~G~~G~GKTtL~~~~~~~~~~ 73 (183)
.++|-++.++.+.+++. ..+.++++|+||+|+||||||+.+++.+..
T Consensus 52 ~~~G~~~~i~~lv~~l~~~a~g~~~~r~il~L~GPPGsGKStla~~La~~l~~ 104 (361)
T smart00763 52 DFFGMEEAIERFVNYFKSAAQGLEERKQILYLLGPVGGGKSSLVECLKRGLEE 104 (361)
T ss_pred hccCcHHHHHHHHHHHHHHHhcCCCCCcEEEEECCCCCCHHHHHHHHHHHHhh
Confidence 68899999999998876 234588999999999999999999998866
No 222
>PRK14259 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.15 E-value=1.3e-05 Score=61.59 Aligned_cols=26 Identities=23% Similarity=0.488 Sum_probs=22.9
Q ss_pred CccEEEEEeCCCCcHHHHHHHHHhHH
Q 035585 46 NVNIVGVYGMGGIGKTTLVKEFARQA 71 (183)
Q Consensus 46 ~~~~v~i~G~~G~GKTtL~~~~~~~~ 71 (183)
+...++|.|++|+|||||++.++..+
T Consensus 38 ~Ge~~~l~G~nGsGKSTLl~~l~Gl~ 63 (269)
T PRK14259 38 RGKVTALIGPSGCGKSTVLRSLNRMN 63 (269)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhccc
Confidence 45789999999999999999998754
No 223
>cd03233 ABC_PDR_domain1 The pleiotropic drug resistance (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.15 E-value=1.7e-05 Score=58.39 Aligned_cols=28 Identities=32% Similarity=0.380 Sum_probs=24.3
Q ss_pred CCccEEEEEeCCCCcHHHHHHHHHhHHh
Q 035585 45 VNVNIVGVYGMGGIGKTTLVKEFARQAS 72 (183)
Q Consensus 45 ~~~~~v~i~G~~G~GKTtL~~~~~~~~~ 72 (183)
.+...++|.|++|+|||||++.+.....
T Consensus 31 ~~Ge~~~i~G~nGsGKSTLl~~l~G~~~ 58 (202)
T cd03233 31 KPGEMVLVLGRPGSGCSTLLKALANRTE 58 (202)
T ss_pred CCCcEEEEECCCCCCHHHHHHHhcccCC
Confidence 3457999999999999999999988765
No 224
>TIGR02012 tigrfam_recA protein RecA. This model describes orthologs of the recA protein. RecA promotes hybridization of homolgous regions of DNA. A segment of ssDNA can be hybridized to another ssDNA region, or to a dsDNA region. ATP is hydrolyzed in the process. Part of the SOS respones, it is regulated by LexA via autocatalytic cleavage.
Probab=98.15 E-value=1.6e-05 Score=62.41 Aligned_cols=85 Identities=19% Similarity=0.267 Sum_probs=52.9
Q ss_pred CccEEEEEeCCCCcHHHHHHHHHhHHhhhhcccceEEEEecCCcCHHHHHHHHHHHhCCC-------chhHHHHHHHHHH
Q 035585 46 NVNIVGVYGMGGIGKTTLVKEFARQASEEKLFDQVVFSEVSQTPDIKKIHGEIAEKLGLE-------FSEEAESRRASRL 118 (183)
Q Consensus 46 ~~~~v~i~G~~G~GKTtL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~-------~~~~~~~~~~~~~ 118 (183)
+.+++.|+|++|+|||||+.+++...... -..++|++.....+.. .+..++.. .+. ........+
T Consensus 54 ~G~iteI~G~~GsGKTtLaL~~~~~~~~~--g~~v~yId~E~~~~~~-----~a~~lGvd~~~l~v~~p~-~~eq~l~~~ 125 (321)
T TIGR02012 54 RGRIIEIYGPESSGKTTLALHAIAEAQKA--GGTAAFIDAEHALDPV-----YARKLGVDIDNLLVSQPD-TGEQALEIA 125 (321)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHc--CCcEEEEcccchhHHH-----HHHHcCCCHHHeEEecCC-CHHHHHHHH
Confidence 44689999999999999999988776543 4457888776544332 23333321 111 122223333
Q ss_pred HHHHhcCCeEEEEEeCCCCc
Q 035585 119 YERLKKEKMILVILDNIWKY 138 (183)
Q Consensus 119 ~~~~~~~~~~llvlD~~~~~ 138 (183)
...++....-+||+|.+..+
T Consensus 126 ~~li~~~~~~lIVIDSv~al 145 (321)
T TIGR02012 126 ETLVRSGAVDIIVVDSVAAL 145 (321)
T ss_pred HHHhhccCCcEEEEcchhhh
Confidence 33344567889999987643
No 225
>cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane. The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring.
Probab=98.15 E-value=8.5e-06 Score=60.34 Aligned_cols=27 Identities=30% Similarity=0.356 Sum_probs=23.4
Q ss_pred CccEEEEEeCCCCcHHHHHHHHHhHHh
Q 035585 46 NVNIVGVYGMGGIGKTTLVKEFARQAS 72 (183)
Q Consensus 46 ~~~~v~i~G~~G~GKTtL~~~~~~~~~ 72 (183)
+...++|.|++|+|||||++.++..+.
T Consensus 26 ~G~~~~i~G~nGsGKSTLl~~l~G~~~ 52 (214)
T cd03292 26 AGEFVFLVGPSGAGKSTLLKLIYKEEL 52 (214)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence 457899999999999999999987653
No 226
>cd03227 ABC_Class2 ABC-type Class 2 contains systems involved in cellular processes other than transport. These families are characterised by the fact that the ABC subunit is made up of duplicated, fused ABC modules (ABC2). No known transmembrane proteins or domains are associated with these proteins.
Probab=98.14 E-value=1.3e-05 Score=56.88 Aligned_cols=24 Identities=21% Similarity=0.371 Sum_probs=20.9
Q ss_pred cEEEEEeCCCCcHHHHHHHHHhHH
Q 035585 48 NIVGVYGMGGIGKTTLVKEFARQA 71 (183)
Q Consensus 48 ~~v~i~G~~G~GKTtL~~~~~~~~ 71 (183)
+...|+|++|+|||++++.+.-..
T Consensus 22 ~~~~i~G~NgsGKS~~l~~i~~~~ 45 (162)
T cd03227 22 SLTIITGPNGSGKSTILDAIGLAL 45 (162)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHH
Confidence 689999999999999999976544
No 227
>PRK05642 DNA replication initiation factor; Validated
Probab=98.14 E-value=2.5e-05 Score=58.88 Aligned_cols=38 Identities=13% Similarity=0.381 Sum_probs=29.4
Q ss_pred ccEEEEEeCCCCcHHHHHHHHHhHHhhhhcccceEEEEec
Q 035585 47 VNIVGVYGMGGIGKTTLVKEFARQASEEKLFDQVVFSEVS 86 (183)
Q Consensus 47 ~~~v~i~G~~G~GKTtL~~~~~~~~~~~~~~~~~~~~~~~ 86 (183)
...+.|+|++|+|||.|++.+++....+ ...++|++..
T Consensus 45 ~~~l~l~G~~G~GKTHLl~a~~~~~~~~--~~~v~y~~~~ 82 (234)
T PRK05642 45 ESLIYLWGKDGVGRSHLLQAACLRFEQR--GEPAVYLPLA 82 (234)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHhC--CCcEEEeeHH
Confidence 3678999999999999999998877644 2346676653
No 228
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=98.14 E-value=3.6e-05 Score=62.01 Aligned_cols=90 Identities=17% Similarity=0.166 Sum_probs=54.9
Q ss_pred CccEEEEEeCCCCcHHHHHHHHHhHHhhhh--cccceEEEEecCC-cCHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHH
Q 035585 46 NVNIVGVYGMGGIGKTTLVKEFARQASEEK--LFDQVVFSEVSQT-PDIKKIHGEIAEKLGLEFSEEAESRRASRLYERL 122 (183)
Q Consensus 46 ~~~~v~i~G~~G~GKTtL~~~~~~~~~~~~--~~~~~~~~~~~~~-~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~ 122 (183)
.+.+++++|++|+||||.+..++..+.... ....+..+++... ....+.+...++.++.+.........+...+..+
T Consensus 173 ~~~vi~lvGptGvGKTTT~aKLA~~~~~~~~~~g~~V~lit~Dt~R~aa~eQL~~~a~~lgvpv~~~~~~~~l~~~L~~~ 252 (388)
T PRK12723 173 KKRVFILVGPTGVGKTTTIAKLAAIYGINSDDKSLNIKIITIDNYRIGAKKQIQTYGDIMGIPVKAIESFKDLKEEITQS 252 (388)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhhhccCCCeEEEEeccCccHHHHHHHHHHhhcCCcceEeeCcHHHHHHHHHHh
Confidence 457899999999999999999988776421 1234556655543 2334446666776665543322222233333333
Q ss_pred hcCCeEEEEEeCCCC
Q 035585 123 KKEKMILVILDNIWK 137 (183)
Q Consensus 123 ~~~~~~llvlD~~~~ 137 (183)
...-++++|.+..
T Consensus 253 --~~~DlVLIDTaGr 265 (388)
T PRK12723 253 --KDFDLVLVDTIGK 265 (388)
T ss_pred --CCCCEEEEcCCCC
Confidence 4567888888753
No 229
>PRK13537 nodulation ABC transporter NodI; Provisional
Probab=98.14 E-value=8e-06 Score=63.96 Aligned_cols=27 Identities=26% Similarity=0.375 Sum_probs=23.4
Q ss_pred CccEEEEEeCCCCcHHHHHHHHHhHHh
Q 035585 46 NVNIVGVYGMGGIGKTTLVKEFARQAS 72 (183)
Q Consensus 46 ~~~~v~i~G~~G~GKTtL~~~~~~~~~ 72 (183)
+..+++|.|++|+|||||++.+...+.
T Consensus 32 ~Gei~gllGpNGaGKSTLl~~l~Gl~~ 58 (306)
T PRK13537 32 RGECFGLLGPNGAGKTTTLRMLLGLTH 58 (306)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhcCCC
Confidence 446899999999999999999987654
No 230
>CHL00195 ycf46 Ycf46; Provisional
Probab=98.14 E-value=1.1e-05 Score=66.94 Aligned_cols=73 Identities=16% Similarity=0.159 Sum_probs=45.8
Q ss_pred CccEEEEEeCCCCcHHHHHHHHHhHHhhhhcccceEEEEecCCcCHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHHhcC
Q 035585 46 NVNIVGVYGMGGIGKTTLVKEFARQASEEKLFDQVVFSEVSQTPDIKKIHGEIAEKLGLEFSEEAESRRASRLYERLKKE 125 (183)
Q Consensus 46 ~~~~v~i~G~~G~GKTtL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~ 125 (183)
.++-++++||+|+|||.+|+.+++.+... .+.++++. +... ..+. ....+..++......
T Consensus 258 ~pkGILL~GPpGTGKTllAkaiA~e~~~~-----~~~l~~~~----------l~~~----~vGe-se~~l~~~f~~A~~~ 317 (489)
T CHL00195 258 TPRGLLLVGIQGTGKSLTAKAIANDWQLP-----LLRLDVGK----------LFGG----IVGE-SESRMRQMIRIAEAL 317 (489)
T ss_pred CCceEEEECCCCCcHHHHHHHHHHHhCCC-----EEEEEhHH----------hccc----ccCh-HHHHHHHHHHHHHhc
Confidence 45679999999999999999999876543 12222211 1111 1111 122344555555557
Q ss_pred CeEEEEEeCCCCc
Q 035585 126 KMILVILDNIWKY 138 (183)
Q Consensus 126 ~~~llvlD~~~~~ 138 (183)
.+.+|+|||+|..
T Consensus 318 ~P~IL~IDEID~~ 330 (489)
T CHL00195 318 SPCILWIDEIDKA 330 (489)
T ss_pred CCcEEEehhhhhh
Confidence 8999999999854
No 231
>PRK14235 phosphate transporter ATP-binding protein; Provisional
Probab=98.14 E-value=1.6e-05 Score=61.09 Aligned_cols=27 Identities=22% Similarity=0.442 Sum_probs=23.7
Q ss_pred CccEEEEEeCCCCcHHHHHHHHHhHHh
Q 035585 46 NVNIVGVYGMGGIGKTTLVKEFARQAS 72 (183)
Q Consensus 46 ~~~~v~i~G~~G~GKTtL~~~~~~~~~ 72 (183)
+..+++|.|++|+|||||++.+.....
T Consensus 44 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~~ 70 (267)
T PRK14235 44 EKTVTAFIGPSGCGKSTFLRCLNRMND 70 (267)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhcc
Confidence 457899999999999999999987653
No 232
>cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component. The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.14 E-value=6.7e-06 Score=60.83 Aligned_cols=24 Identities=38% Similarity=0.614 Sum_probs=21.5
Q ss_pred EEEEEeCCCCcHHHHHHHHHhHHh
Q 035585 49 IVGVYGMGGIGKTTLVKEFARQAS 72 (183)
Q Consensus 49 ~v~i~G~~G~GKTtL~~~~~~~~~ 72 (183)
.++|.|++|+|||||++.+...+.
T Consensus 27 ~~~i~G~nGsGKSTLl~~l~Gl~~ 50 (211)
T cd03264 27 MYGLLGPNGAGKTTLMRILATLTP 50 (211)
T ss_pred cEEEECCCCCCHHHHHHHHhCCCC
Confidence 899999999999999999986543
No 233
>PF02562 PhoH: PhoH-like protein; InterPro: IPR003714 PhoH is a cytoplasmic protein and predicted ATPase that is induced by phosphate starvation and belongings to the phosphate regulon (pho) in Escherichia coli [].; GO: 0005524 ATP binding; PDB: 3B85_A.
Probab=98.13 E-value=5.3e-06 Score=60.97 Aligned_cols=130 Identities=21% Similarity=0.249 Sum_probs=58.6
Q ss_pred hHHHHHHHHHHhccCCccEEEEEeCCCCcHHHHHHHHHhHHhhhhcccceEEEEecCC--cC-----------HHHHHHH
Q 035585 31 RLSTLKSIQDALTDVNVNIVGVYGMGGIGKTTLVKEFARQASEEKLFDQVVFSEVSQT--PD-----------IKKIHGE 97 (183)
Q Consensus 31 R~~~l~~l~~~l~~~~~~~v~i~G~~G~GKTtL~~~~~~~~~~~~~~~~~~~~~~~~~--~~-----------~~~~~~~ 97 (183)
+..+.....+.+. ...++.+.|+.|+|||.||.....++-....+..+++....-. .. ..-.+..
T Consensus 5 ~~~~Q~~~~~al~--~~~~v~~~G~AGTGKT~LA~a~Al~~v~~g~~~kiii~Rp~v~~~~~lGflpG~~~eK~~p~~~p 82 (205)
T PF02562_consen 5 KNEEQKFALDALL--NNDLVIVNGPAGTGKTFLALAAALELVKEGEYDKIIITRPPVEAGEDLGFLPGDLEEKMEPYLRP 82 (205)
T ss_dssp -SHHHHHHHHHHH--H-SEEEEE--TTSSTTHHHHHHHHHHHHTTS-SEEEEEE-S--TT----SS---------TTTHH
T ss_pred CCHHHHHHHHHHH--hCCeEEEECCCCCcHHHHHHHHHHHHHHhCCCcEEEEEecCCCCccccccCCCCHHHHHHHHHHH
Confidence 4455555555554 3469999999999999999998766544345556655533211 10 1112223
Q ss_pred HHHHhCCCchhHHHHHHHHH------HHHHHhc--CCeEEEEEeCCCCcc--cccccCcCCCCCCCCcEEEEEecChH
Q 035585 98 IAEKLGLEFSEEAESRRASR------LYERLKK--EKMILVILDNIWKYL--DLETVGIPFGDDHRGCKLLLTARDCN 165 (183)
Q Consensus 98 i~~~l~~~~~~~~~~~~~~~------~~~~~~~--~~~~llvlD~~~~~~--~~~~l~~~~~~~~~~~~iiitsr~~~ 165 (183)
+.+.+..-............ -..+++. =..-+||+||+++.. ++..+ +.....+|+++++-...+
T Consensus 83 ~~d~l~~~~~~~~~~~~~~~~~Ie~~~~~~iRGrt~~~~~iIvDEaQN~t~~~~k~i---lTR~g~~skii~~GD~~Q 157 (205)
T PF02562_consen 83 IYDALEELFGKEKLEELIQNGKIEIEPLAFIRGRTFDNAFIIVDEAQNLTPEELKMI---LTRIGEGSKIIITGDPSQ 157 (205)
T ss_dssp HHHHHTTTS-TTCHHHHHHTTSEEEEEGGGGTT--B-SEEEEE-SGGG--HHHHHHH---HTTB-TT-EEEEEE----
T ss_pred HHHHHHHHhChHhHHHHhhcCeEEEEehhhhcCccccceEEEEecccCCCHHHHHHH---HcccCCCcEEEEecCcee
Confidence 33333222111111111100 0111211 124689999999874 34444 344567899999876543
No 234
>cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.13 E-value=2e-05 Score=58.68 Aligned_cols=27 Identities=30% Similarity=0.426 Sum_probs=23.5
Q ss_pred CccEEEEEeCCCCcHHHHHHHHHhHHh
Q 035585 46 NVNIVGVYGMGGIGKTTLVKEFARQAS 72 (183)
Q Consensus 46 ~~~~v~i~G~~G~GKTtL~~~~~~~~~ 72 (183)
+...++|.|++|+|||||++.+.....
T Consensus 29 ~G~~~~i~G~nGsGKSTLl~~l~Gl~~ 55 (220)
T cd03293 29 EGEFVALVGPSGCGKSTLLRIIAGLER 55 (220)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCCC
Confidence 446899999999999999999987654
No 235
>TIGR00362 DnaA chromosomal replication initiator protein DnaA. DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006).
Probab=98.13 E-value=1.4e-05 Score=65.01 Aligned_cols=76 Identities=22% Similarity=0.363 Sum_probs=46.4
Q ss_pred ccEEEEEeCCCCcHHHHHHHHHhHHhhhhcccceEEEEecCCcCHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHHhcCC
Q 035585 47 VNIVGVYGMGGIGKTTLVKEFARQASEEKLFDQVVFSEVSQTPDIKKIHGEIAEKLGLEFSEEAESRRASRLYERLKKEK 126 (183)
Q Consensus 47 ~~~v~i~G~~G~GKTtL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 126 (183)
...+.|+|++|+|||+|++.+++.+........++|+++. .+...+...+... ....+...+. .
T Consensus 136 ~n~l~l~G~~G~GKThL~~ai~~~l~~~~~~~~v~yi~~~------~~~~~~~~~~~~~--------~~~~~~~~~~--~ 199 (405)
T TIGR00362 136 YNPLFIYGGVGLGKTHLLHAIGNEILENNPNAKVVYVSSE------KFTNDFVNALRNN--------KMEEFKEKYR--S 199 (405)
T ss_pred CCeEEEECCCCCcHHHHHHHHHHHHHHhCCCCcEEEEEHH------HHHHHHHHHHHcC--------CHHHHHHHHH--h
Confidence 3568999999999999999999988765222346666432 2333333333211 1122333332 2
Q ss_pred eEEEEEeCCCCc
Q 035585 127 MILVILDNIWKY 138 (183)
Q Consensus 127 ~~llvlD~~~~~ 138 (183)
.-+|+|||++..
T Consensus 200 ~dlLiiDDi~~l 211 (405)
T TIGR00362 200 VDLLLIDDIQFL 211 (405)
T ss_pred CCEEEEehhhhh
Confidence 458999999855
No 236
>TIGR03740 galliderm_ABC gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit. Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family describes the ATP-binding subunit of a gallidermin/epidermin class lantibiotic protection transporter. It is largely restricted to gallidermin-family lantibiotic biosynthesis and export cassettes, but also occurs in orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes.
Probab=98.13 E-value=1.3e-05 Score=59.74 Aligned_cols=27 Identities=30% Similarity=0.475 Sum_probs=23.5
Q ss_pred CccEEEEEeCCCCcHHHHHHHHHhHHh
Q 035585 46 NVNIVGVYGMGGIGKTTLVKEFARQAS 72 (183)
Q Consensus 46 ~~~~v~i~G~~G~GKTtL~~~~~~~~~ 72 (183)
+...++|.|++|+|||||++.+...+.
T Consensus 25 ~Ge~~~i~G~nGsGKSTLl~~l~G~~~ 51 (223)
T TIGR03740 25 KNSVYGLLGPNGAGKSTLLKMITGILR 51 (223)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCCC
Confidence 457899999999999999999987653
No 237
>PRK14265 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.13 E-value=1.4e-05 Score=61.63 Aligned_cols=26 Identities=35% Similarity=0.581 Sum_probs=22.6
Q ss_pred CccEEEEEeCCCCcHHHHHHHHHhHH
Q 035585 46 NVNIVGVYGMGGIGKTTLVKEFARQA 71 (183)
Q Consensus 46 ~~~~v~i~G~~G~GKTtL~~~~~~~~ 71 (183)
+...++|.|++|+|||||++.++...
T Consensus 45 ~Ge~~~IiG~nGsGKSTLl~~l~Gl~ 70 (274)
T PRK14265 45 AKKIIAFIGPSGCGKSTLLRCFNRMN 70 (274)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhccc
Confidence 45789999999999999999998543
No 238
>PRK14974 cell division protein FtsY; Provisional
Probab=98.13 E-value=4.2e-05 Score=60.50 Aligned_cols=91 Identities=21% Similarity=0.215 Sum_probs=51.9
Q ss_pred CccEEEEEeCCCCcHHHHHHHHHhHHhhhhcccceEEEEecCC-cCHHHHHHHHHHHhCCCchhH----HHHHHHHHHHH
Q 035585 46 NVNIVGVYGMGGIGKTTLVKEFARQASEEKLFDQVVFSEVSQT-PDIKKIHGEIAEKLGLEFSEE----AESRRASRLYE 120 (183)
Q Consensus 46 ~~~~v~i~G~~G~GKTtL~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~i~~~l~~~~~~~----~~~~~~~~~~~ 120 (183)
++.+++++|++|+||||++..++..+... -..+.++..... ....+.+...++.++.+.... ...........
T Consensus 139 ~~~vi~~~G~~GvGKTTtiakLA~~l~~~--g~~V~li~~Dt~R~~a~eqL~~~a~~lgv~v~~~~~g~dp~~v~~~ai~ 216 (336)
T PRK14974 139 KPVVIVFVGVNGTGKTTTIAKLAYYLKKN--GFSVVIAAGDTFRAGAIEQLEEHAERLGVKVIKHKYGADPAAVAYDAIE 216 (336)
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHHHc--CCeEEEecCCcCcHHHHHHHHHHHHHcCCceecccCCCCHHHHHHHHHH
Confidence 35789999999999999999999877654 223444443322 233445566666666543211 11111122222
Q ss_pred HHhcCCeEEEEEeCCCCc
Q 035585 121 RLKKEKMILVILDNIWKY 138 (183)
Q Consensus 121 ~~~~~~~~llvlD~~~~~ 138 (183)
.....+.-+|++|.+...
T Consensus 217 ~~~~~~~DvVLIDTaGr~ 234 (336)
T PRK14974 217 HAKARGIDVVLIDTAGRM 234 (336)
T ss_pred HHHhCCCCEEEEECCCcc
Confidence 222233448889987644
No 239
>cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport. Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.13 E-value=7e-06 Score=61.65 Aligned_cols=27 Identities=30% Similarity=0.508 Sum_probs=23.4
Q ss_pred CccEEEEEeCCCCcHHHHHHHHHhHHh
Q 035585 46 NVNIVGVYGMGGIGKTTLVKEFARQAS 72 (183)
Q Consensus 46 ~~~~v~i~G~~G~GKTtL~~~~~~~~~ 72 (183)
+...++|+|++|+|||||++.++..+.
T Consensus 30 ~Ge~~~l~G~nGsGKSTLl~~l~G~~~ 56 (233)
T cd03258 30 KGEIFGIIGRSGAGKSTLIRCINGLER 56 (233)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 457899999999999999999986553
No 240
>PRK14264 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.12 E-value=1.8e-05 Score=62.00 Aligned_cols=26 Identities=23% Similarity=0.479 Sum_probs=23.2
Q ss_pred CccEEEEEeCCCCcHHHHHHHHHhHH
Q 035585 46 NVNIVGVYGMGGIGKTTLVKEFARQA 71 (183)
Q Consensus 46 ~~~~v~i~G~~G~GKTtL~~~~~~~~ 71 (183)
+...++|+|++|+|||||++.++..+
T Consensus 70 ~Ge~~~IvG~nGsGKSTLl~~L~Gl~ 95 (305)
T PRK14264 70 EKSVTALIGPSGCGKSTFLRCLNRMN 95 (305)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhccc
Confidence 45789999999999999999998765
No 241
>COG1117 PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=98.12 E-value=4.3e-06 Score=61.32 Aligned_cols=40 Identities=23% Similarity=0.372 Sum_probs=27.0
Q ss_pred cccchHHHHHHHHHHhccCCccEEEEEeCCCCcHHHHHHHHH
Q 035585 27 AFKSRLSTLKSIQDALTDVNVNIVGVYGMGGIGKTTLVKEFA 68 (183)
Q Consensus 27 ~~~gR~~~l~~l~~~l~~~~~~~v~i~G~~G~GKTtL~~~~~ 68 (183)
-++|-...+..+.--+ ....+.++.||+|+||||+++.+=
T Consensus 15 ~yYg~~~aL~~i~l~i--~~~~VTAlIGPSGcGKST~LR~lN 54 (253)
T COG1117 15 LYYGDKHALKDINLDI--PKNKVTALIGPSGCGKSTLLRCLN 54 (253)
T ss_pred EEECchhhhccCceec--cCCceEEEECCCCcCHHHHHHHHH
Confidence 3455444444433222 345789999999999999999863
No 242
>TIGR03522 GldA_ABC_ATP gliding motility-associated ABC transporter ATP-binding subunit GldA. Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility.
Probab=98.12 E-value=7.3e-06 Score=64.03 Aligned_cols=27 Identities=33% Similarity=0.433 Sum_probs=23.2
Q ss_pred CccEEEEEeCCCCcHHHHHHHHHhHHh
Q 035585 46 NVNIVGVYGMGGIGKTTLVKEFARQAS 72 (183)
Q Consensus 46 ~~~~v~i~G~~G~GKTtL~~~~~~~~~ 72 (183)
+..+++|.|++|+|||||++.+...+.
T Consensus 27 ~Gei~~l~G~NGaGKTTLl~~l~Gl~~ 53 (301)
T TIGR03522 27 KGRIVGFLGPNGAGKSTTMKIITGYLP 53 (301)
T ss_pred CCeEEEEECCCCCCHHHHHHHHhCCCC
Confidence 457899999999999999999986543
No 243
>PRK09361 radB DNA repair and recombination protein RadB; Provisional
Probab=98.12 E-value=4.2e-05 Score=57.17 Aligned_cols=39 Identities=26% Similarity=0.456 Sum_probs=32.0
Q ss_pred CccEEEEEeCCCCcHHHHHHHHHhHHhhhhcccceEEEEec
Q 035585 46 NVNIVGVYGMGGIGKTTLVKEFARQASEEKLFDQVVFSEVS 86 (183)
Q Consensus 46 ~~~~v~i~G~~G~GKTtL~~~~~~~~~~~~~~~~~~~~~~~ 86 (183)
...++.|+|++|+|||+++.+++...... ...++|++..
T Consensus 22 ~g~i~~i~G~~GsGKT~l~~~la~~~~~~--~~~v~yi~~e 60 (225)
T PRK09361 22 RGTITQIYGPPGSGKTNICLQLAVEAAKN--GKKVIYIDTE 60 (225)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHC--CCeEEEEECC
Confidence 34689999999999999999998877543 4568888887
No 244
>PF07724 AAA_2: AAA domain (Cdc48 subfamily); InterPro: IPR013093 ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of ATPase AAA-2 domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. Some of these ATPases function as a chaperone subunit of a proteasome-like degradation complex. This ATPase family includes some proteins not detected by IPR003959 from INTERPRO.; GO: 0005524 ATP binding; PDB: 1R6B_X 1KSF_X 3PXI_C 1KYI_T 1G3I_S 1OFH_B 1OFI_A 1G41_A 1IM2_A 1HQY_E ....
Probab=98.12 E-value=3.5e-06 Score=60.44 Aligned_cols=42 Identities=21% Similarity=0.232 Sum_probs=32.0
Q ss_pred ccEEEEEeCCCCcHHHHHHHHHhHHh-hhhcccceEEEEecCCcC
Q 035585 47 VNIVGVYGMGGIGKTTLVKEFARQAS-EEKLFDQVVFSEVSQTPD 90 (183)
Q Consensus 47 ~~~v~i~G~~G~GKTtL~~~~~~~~~-~~~~~~~~~~~~~~~~~~ 90 (183)
..++.++||+|+|||.||+.++..+. .. ....+.++++.-..
T Consensus 3 ~~~~ll~GpsGvGKT~la~~la~~l~~~~--~~~~~~~d~s~~~~ 45 (171)
T PF07724_consen 3 KSNFLLAGPSGVGKTELAKALAELLFVGS--ERPLIRIDMSEYSE 45 (171)
T ss_dssp SEEEEEESSTTSSHHHHHHHHHHHHT-SS--CCEEEEEEGGGHCS
T ss_pred EEEEEEECCCCCCHHHHHHHHHHHhccCC--ccchHHHhhhcccc
Confidence 45789999999999999999999887 33 33456667765444
No 245
>cd03369 ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-type transporter 1). NFT1 belongs to the MRP (mulrtidrug resisitance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate.
Probab=98.12 E-value=2.5e-05 Score=57.62 Aligned_cols=26 Identities=31% Similarity=0.461 Sum_probs=22.8
Q ss_pred CccEEEEEeCCCCcHHHHHHHHHhHH
Q 035585 46 NVNIVGVYGMGGIGKTTLVKEFARQA 71 (183)
Q Consensus 46 ~~~~v~i~G~~G~GKTtL~~~~~~~~ 71 (183)
+...++|.|++|+|||||++.+....
T Consensus 33 ~G~~~~i~G~nGsGKSTLl~~l~Gl~ 58 (207)
T cd03369 33 AGEKIGIVGRTGAGKSTLILALFRFL 58 (207)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhccc
Confidence 45789999999999999999998654
No 246
>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif. They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.
Probab=98.12 E-value=2.3e-05 Score=56.56 Aligned_cols=75 Identities=28% Similarity=0.357 Sum_probs=45.2
Q ss_pred CccEEEEEeCCCCcHHHHHHHHHhHHhhhhcccceEEEEecCCcCHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHHhcC
Q 035585 46 NVNIVGVYGMGGIGKTTLVKEFARQASEEKLFDQVVFSEVSQTPDIKKIHGEIAEKLGLEFSEEAESRRASRLYERLKKE 125 (183)
Q Consensus 46 ~~~~v~i~G~~G~GKTtL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~ 125 (183)
....+.++|++|+|||.||..+.+.+..+ ...+.|++. .+++..+..... ... .......+.
T Consensus 46 ~~~~l~l~G~~G~GKThLa~ai~~~~~~~--g~~v~f~~~------~~L~~~l~~~~~----~~~----~~~~~~~l~-- 107 (178)
T PF01695_consen 46 NGENLILYGPPGTGKTHLAVAIANEAIRK--GYSVLFITA------SDLLDELKQSRS----DGS----YEELLKRLK-- 107 (178)
T ss_dssp C--EEEEEESTTSSHHHHHHHHHHHHHHT--T--EEEEEH------HHHHHHHHCCHC----CTT----HCHHHHHHH--
T ss_pred cCeEEEEEhhHhHHHHHHHHHHHHHhccC--CcceeEeec------Cceecccccccc----ccc----hhhhcCccc--
Confidence 45789999999999999999999887764 334666543 334444432111 111 123344443
Q ss_pred CeEEEEEeCCCCc
Q 035585 126 KMILVILDNIWKY 138 (183)
Q Consensus 126 ~~~llvlD~~~~~ 138 (183)
+.-+|||||+...
T Consensus 108 ~~dlLilDDlG~~ 120 (178)
T PF01695_consen 108 RVDLLILDDLGYE 120 (178)
T ss_dssp TSSCEEEETCTSS
T ss_pred cccEeccccccee
Confidence 4578889998643
No 247
>PRK13540 cytochrome c biogenesis protein CcmA; Provisional
Probab=98.12 E-value=7.5e-06 Score=60.12 Aligned_cols=27 Identities=33% Similarity=0.404 Sum_probs=23.3
Q ss_pred CccEEEEEeCCCCcHHHHHHHHHhHHh
Q 035585 46 NVNIVGVYGMGGIGKTTLVKEFARQAS 72 (183)
Q Consensus 46 ~~~~v~i~G~~G~GKTtL~~~~~~~~~ 72 (183)
+...++|.|++|+|||||++.+.....
T Consensus 26 ~Ge~~~l~G~nGsGKSTLl~~i~G~~~ 52 (200)
T PRK13540 26 AGGLLHLKGSNGAGKTTLLKLIAGLLN 52 (200)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence 457899999999999999999986543
No 248
>PRK13538 cytochrome c biogenesis protein CcmA; Provisional
Probab=98.12 E-value=1.7e-05 Score=58.44 Aligned_cols=27 Identities=33% Similarity=0.457 Sum_probs=23.3
Q ss_pred CccEEEEEeCCCCcHHHHHHHHHhHHh
Q 035585 46 NVNIVGVYGMGGIGKTTLVKEFARQAS 72 (183)
Q Consensus 46 ~~~~v~i~G~~G~GKTtL~~~~~~~~~ 72 (183)
+...++|.|++|+|||||++.++..+.
T Consensus 26 ~Ge~~~l~G~nGsGKSTLl~~l~G~~~ 52 (204)
T PRK13538 26 AGELVQIEGPNGAGKTSLLRILAGLAR 52 (204)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCCC
Confidence 446899999999999999999987643
No 249
>cd03268 ABC_BcrA_bacitracin_resist The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance. Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multienzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein.
Probab=98.12 E-value=6.3e-06 Score=60.81 Aligned_cols=27 Identities=33% Similarity=0.378 Sum_probs=23.2
Q ss_pred CccEEEEEeCCCCcHHHHHHHHHhHHh
Q 035585 46 NVNIVGVYGMGGIGKTTLVKEFARQAS 72 (183)
Q Consensus 46 ~~~~v~i~G~~G~GKTtL~~~~~~~~~ 72 (183)
+...++|.|++|+|||||++.+.....
T Consensus 25 ~G~~~~i~G~nGsGKSTLl~~l~Gl~~ 51 (208)
T cd03268 25 KGEIYGFLGPNGAGKTTTMKIILGLIK 51 (208)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCcC
Confidence 457899999999999999999986543
No 250
>cd03298 ABC_ThiQ_thiamine_transporter ABC-type thiamine tranport system; part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP. Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.12 E-value=6.5e-06 Score=60.89 Aligned_cols=27 Identities=30% Similarity=0.410 Sum_probs=23.6
Q ss_pred CccEEEEEeCCCCcHHHHHHHHHhHHh
Q 035585 46 NVNIVGVYGMGGIGKTTLVKEFARQAS 72 (183)
Q Consensus 46 ~~~~v~i~G~~G~GKTtL~~~~~~~~~ 72 (183)
+...++|.|++|+|||||++.+...+.
T Consensus 23 ~Ge~~~l~G~nGsGKSTLl~~l~gl~~ 49 (211)
T cd03298 23 QGEITAIVGPSGSGKSTLLNLIAGFET 49 (211)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 457899999999999999999987654
No 251
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs. A related protein is found in archaea.
Probab=98.11 E-value=4.1e-05 Score=55.28 Aligned_cols=37 Identities=19% Similarity=0.246 Sum_probs=28.6
Q ss_pred EEEEeCCCCcHHHHHHHHHhHHhhhhcccceEEEEecCC
Q 035585 50 VGVYGMGGIGKTTLVKEFARQASEEKLFDQVVFSEVSQT 88 (183)
Q Consensus 50 v~i~G~~G~GKTtL~~~~~~~~~~~~~~~~~~~~~~~~~ 88 (183)
++|.|++|+|||+|+.+++...... -..++|+.....
T Consensus 2 ~li~G~~G~GKT~l~~~~~~~~~~~--g~~v~~~s~e~~ 38 (187)
T cd01124 2 TLLSGGPGTGKTTFALQFLYAGLAR--GEPGLYVTLEES 38 (187)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHHC--CCcEEEEECCCC
Confidence 6899999999999999988876543 345778766543
No 252
>cd00561 CobA_CobO_BtuR ATP:corrinoid adenosyltransferase BtuR/CobO/CobP. This family consists of the BtuR, CobO, CobP proteins all of which are Cob(I)alamin (vitamin B12) adenosyltransferase, which is involved in cobalamin (vitamin B12) biosynthesis. This enzyme is a homodimer, which catalyzes the adenosylation reaction: ATP + cob(I)alamin + H2O <= phosphate + diphosphate + adenosylcobalamin.
Probab=98.11 E-value=3.6e-05 Score=54.35 Aligned_cols=121 Identities=26% Similarity=0.213 Sum_probs=69.9
Q ss_pred cEEEEEeCCCCcHHHHHHHHHhHHhhhhcccceEEEEecCC---cCHHHHHHHHHHHh-----CC------CchhH---H
Q 035585 48 NIVGVYGMGGIGKTTLVKEFARQASEEKLFDQVVFSEVSQT---PDIKKIHGEIAEKL-----GL------EFSEE---A 110 (183)
Q Consensus 48 ~~v~i~G~~G~GKTtL~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~i~~~l-----~~------~~~~~---~ 110 (183)
..+-|++.+|.||||+|...+-+.... -..+.++++-.. ......+..+ ..+ +. ..+.. .
T Consensus 3 G~i~vy~g~G~Gkt~~a~g~~~ra~~~--g~~v~~vQFlKg~~~~gE~~~l~~l-~~v~~~~~g~~~~~~~~~~~~~~~~ 79 (159)
T cd00561 3 GLIQVYTGNGKGKTTAALGLALRALGH--GYRVGVVQFLKGGWKYGELKALERL-PNIEIHRMGRGFFWTTENDEEDIAA 79 (159)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHHC--CCeEEEEEEeCCCCccCHHHHHHhC-CCcEEEECCCCCccCCCChHHHHHH
Confidence 578899999999999999988777654 334666655443 2223222222 000 00 00111 1
Q ss_pred HHHHHHHHHHHHhcCCeEEEEEeCCCCc-----ccccccCcCCCCCCCCcEEEEEecChH--HHhhcC
Q 035585 111 ESRRASRLYERLKKEKMILVILDNIWKY-----LDLETVGIPFGDDHRGCKLLLTARDCN--VLLNMS 171 (183)
Q Consensus 111 ~~~~~~~~~~~~~~~~~~llvlD~~~~~-----~~~~~l~~~~~~~~~~~~iiitsr~~~--~~~~~~ 171 (183)
...........+..+.--+|||||+-.. ...+.+...+.....+..+|+|.|+.. +++...
T Consensus 80 a~~~~~~a~~~~~~~~~dLlVLDEi~~a~~~gli~~~~v~~ll~~rp~~~evIlTGr~~p~~l~e~AD 147 (159)
T cd00561 80 AAEGWAFAKEAIASGEYDLVILDEINYALGYGLLDVEEVVDLLKAKPEDLELVLTGRNAPKELIEAAD 147 (159)
T ss_pred HHHHHHHHHHHHhcCCCCEEEEechHhHhhCCCCCHHHHHHHHHcCCCCCEEEEECCCCCHHHHHhCc
Confidence 1112233344444567789999998644 234444555566667888999999654 544443
No 253
>cd03213 ABCG_EPDR ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR). DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus.
Probab=98.11 E-value=2.6e-06 Score=62.32 Aligned_cols=27 Identities=26% Similarity=0.449 Sum_probs=23.8
Q ss_pred CCccEEEEEeCCCCcHHHHHHHHHhHH
Q 035585 45 VNVNIVGVYGMGGIGKTTLVKEFARQA 71 (183)
Q Consensus 45 ~~~~~v~i~G~~G~GKTtL~~~~~~~~ 71 (183)
.+...++|.|++|+|||||++.++...
T Consensus 33 ~~Ge~~~l~G~nGsGKStLl~~i~Gl~ 59 (194)
T cd03213 33 KPGELTAIMGPSGAGKSTLLNALAGRR 59 (194)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 345789999999999999999998876
No 254
>cd03232 ABC_PDR_domain2 The pleiotropic drug resistance-like (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.11 E-value=6.2e-06 Score=60.21 Aligned_cols=25 Identities=32% Similarity=0.482 Sum_probs=22.3
Q ss_pred CccEEEEEeCCCCcHHHHHHHHHhH
Q 035585 46 NVNIVGVYGMGGIGKTTLVKEFARQ 70 (183)
Q Consensus 46 ~~~~v~i~G~~G~GKTtL~~~~~~~ 70 (183)
+...++|+|++|+|||||++.+...
T Consensus 32 ~Ge~~~l~G~nGsGKSTLl~~l~G~ 56 (192)
T cd03232 32 PGTLTALMGESGAGKTTLLDVLAGR 56 (192)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCC
Confidence 4578999999999999999999864
No 255
>PRK11147 ABC transporter ATPase component; Reviewed
Probab=98.10 E-value=2.3e-05 Score=67.32 Aligned_cols=129 Identities=20% Similarity=0.175 Sum_probs=66.9
Q ss_pred CccEEEEEeCCCCcHHHHHHHHHhHHhhhh---ccc---ceEEEEecC-----CcCHHHHH----------------HHH
Q 035585 46 NVNIVGVYGMGGIGKTTLVKEFARQASEEK---LFD---QVVFSEVSQ-----TPDIKKIH----------------GEI 98 (183)
Q Consensus 46 ~~~~v~i~G~~G~GKTtL~~~~~~~~~~~~---~~~---~~~~~~~~~-----~~~~~~~~----------------~~i 98 (183)
+...++|+|++|+|||||++.++....... .+. .+.|+.-.. ..+..+.. ..+
T Consensus 344 ~Ge~~~l~G~NGsGKSTLlk~l~G~~~p~~G~i~~~~~~~i~y~~q~~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~ 423 (635)
T PRK11147 344 RGDKIALIGPNGCGKTTLLKLMLGQLQADSGRIHCGTKLEVAYFDQHRAELDPEKTVMDNLAEGKQEVMVNGRPRHVLGY 423 (635)
T ss_pred CCCEEEEECCCCCcHHHHHHHHhCCCCCCCcEEEECCCcEEEEEeCcccccCCCCCHHHHHHhhcccccccchHHHHHHH
Confidence 446799999999999999999998754321 111 122321100 01111111 112
Q ss_pred HHHhCCCch-------hHHHHHHHHHHHHHHhcCCeEEEEEeCCCCccccc---ccCcCCCCCCCCcEEEEEecChHHHh
Q 035585 99 AEKLGLEFS-------EEAESRRASRLYERLKKEKMILVILDNIWKYLDLE---TVGIPFGDDHRGCKLLLTARDCNVLL 168 (183)
Q Consensus 99 ~~~l~~~~~-------~~~~~~~~~~~~~~~~~~~~~llvlD~~~~~~~~~---~l~~~~~~~~~~~~iiitsr~~~~~~ 168 (183)
+..++.... ..+..+.....+......++-+|++||..+..+.. .+...+... .+ .||++|||..++.
T Consensus 424 l~~~~l~~~~~~~~~~~LSgGekqRl~la~al~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~-~~-tvi~vSHd~~~~~ 501 (635)
T PRK11147 424 LQDFLFHPKRAMTPVKALSGGERNRLLLARLFLKPSNLLILDEPTNDLDVETLELLEELLDSY-QG-TVLLVSHDRQFVD 501 (635)
T ss_pred HHhcCCCHHHHhChhhhCCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHhC-CC-eEEEEECCHHHHH
Confidence 222222100 01111222222223333788999999998765422 222222222 34 6999999999988
Q ss_pred hcCCCCcc
Q 035585 169 NMSLCRSE 176 (183)
Q Consensus 169 ~~~~~~~~ 176 (183)
.+......
T Consensus 502 ~~~d~i~~ 509 (635)
T PRK11147 502 NTVTECWI 509 (635)
T ss_pred HhcCEEEE
Confidence 76654433
No 256
>TIGR01184 ntrCD nitrate transport ATP-binding subunits C and D. This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase.
Probab=98.10 E-value=1.3e-05 Score=60.16 Aligned_cols=27 Identities=26% Similarity=0.431 Sum_probs=23.5
Q ss_pred CccEEEEEeCCCCcHHHHHHHHHhHHh
Q 035585 46 NVNIVGVYGMGGIGKTTLVKEFARQAS 72 (183)
Q Consensus 46 ~~~~v~i~G~~G~GKTtL~~~~~~~~~ 72 (183)
+..+++|+|++|+|||||++.+.....
T Consensus 10 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~~ 36 (230)
T TIGR01184 10 QGEFISLIGHSGCGKSTLLNLISGLAQ 36 (230)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 346899999999999999999987654
No 257
>cd03244 ABCC_MRP_domain2 Domain 2 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=98.10 E-value=3.2e-05 Score=57.59 Aligned_cols=26 Identities=31% Similarity=0.445 Sum_probs=22.8
Q ss_pred CccEEEEEeCCCCcHHHHHHHHHhHH
Q 035585 46 NVNIVGVYGMGGIGKTTLVKEFARQA 71 (183)
Q Consensus 46 ~~~~v~i~G~~G~GKTtL~~~~~~~~ 71 (183)
+..+++|.|++|+|||||++.+....
T Consensus 29 ~Ge~~~i~G~nGsGKSTLl~~l~G~~ 54 (221)
T cd03244 29 PGEKVGIVGRTGSGKSSLLLALFRLV 54 (221)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHcCC
Confidence 45789999999999999999998654
No 258
>PRK11819 putative ABC transporter ATP-binding protein; Reviewed
Probab=98.10 E-value=8.7e-06 Score=68.79 Aligned_cols=28 Identities=36% Similarity=0.555 Sum_probs=24.3
Q ss_pred CccEEEEEeCCCCcHHHHHHHHHhHHhh
Q 035585 46 NVNIVGVYGMGGIGKTTLVKEFARQASE 73 (183)
Q Consensus 46 ~~~~v~i~G~~G~GKTtL~~~~~~~~~~ 73 (183)
....++|+|++|+|||||++.+...+..
T Consensus 32 ~Ge~~~iiG~NGsGKSTLlk~i~G~~~p 59 (556)
T PRK11819 32 PGAKIGVLGLNGAGKSTLLRIMAGVDKE 59 (556)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCC
Confidence 4468999999999999999999987643
No 259
>TIGR00763 lon ATP-dependent protease La. This protein is induced by heat shock and other stresses in E. coli, B. subtilis, and other species. The yeast member, designated PIM1, is located in the mitochondrial matrix, required for mitochondrial function, and also induced by heat shock.
Probab=98.10 E-value=1.2e-05 Score=70.49 Aligned_cols=47 Identities=23% Similarity=0.282 Sum_probs=36.5
Q ss_pred cccchHHHHHHHHHHhc------cCCccEEEEEeCCCCcHHHHHHHHHhHHhh
Q 035585 27 AFKSRLSTLKSIQDALT------DVNVNIVGVYGMGGIGKTTLVKEFARQASE 73 (183)
Q Consensus 27 ~~~gR~~~l~~l~~~l~------~~~~~~v~i~G~~G~GKTtL~~~~~~~~~~ 73 (183)
.++|.+...+.+.+++. ..+.+.++++||+|+|||++|+.+++.+..
T Consensus 321 ~~~G~~~~k~~i~~~~~~~~~~~~~~~~~lll~GppG~GKT~lAk~iA~~l~~ 373 (775)
T TIGR00763 321 DHYGLKKVKERILEYLAVQKLRGKMKGPILCLVGPPGVGKTSLGKSIAKALNR 373 (775)
T ss_pred hcCChHHHHHHHHHHHHHHHhhcCCCCceEEEECCCCCCHHHHHHHHHHHhcC
Confidence 46677777777776553 234468999999999999999999998754
No 260
>KOG0726 consensus 26S proteasome regulatory complex, ATPase RPT2 [Posttranslational modification, protein turnover, chaperones]
Probab=98.10 E-value=2.9e-05 Score=59.64 Aligned_cols=101 Identities=23% Similarity=0.278 Sum_probs=68.7
Q ss_pred hhhhhcCCCcccccchHHHHHHHHHHhc-------------cCCccEEEEEeCCCCcHHHHHHHHHhHHhhhhcccceEE
Q 035585 16 EVWLKSNKGYEAFKSRLSTLKSIQDALT-------------DVNVNIVGVYGMGGIGKTTLVKEFARQASEEKLFDQVVF 82 (183)
Q Consensus 16 ~~~~~~~~~~~~~~gR~~~l~~l~~~l~-------------~~~~~~v~i~G~~G~GKTtL~~~~~~~~~~~~~~~~~~~ 82 (183)
.....|.....+.=|-+.+++.|.+..+ -.++.-|.+||++|+|||.||++++++-... |
T Consensus 175 K~eKaP~Ety~diGGle~QiQEiKEsvELPLthPE~YeemGikpPKGVIlyG~PGTGKTLLAKAVANqTSAT--F----- 247 (440)
T KOG0726|consen 175 KVEKAPQETYADIGGLESQIQEIKESVELPLTHPEYYEEMGIKPPKGVILYGEPGTGKTLLAKAVANQTSAT--F----- 247 (440)
T ss_pred ecccCchhhhcccccHHHHHHHHHHhhcCCCCCHHHHHHcCCCCCCeeEEeCCCCCchhHHHHHHhcccchh--h-----
Confidence 4455566666777788888888887654 1355679999999999999999999875543 2
Q ss_pred EEecCCcCHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHHhcCCeEEEEEeCCC
Q 035585 83 SEVSQTPDIKKIHGEIAEKLGLEFSEEAESRRASRLYERLKKEKMILVILDNIW 136 (183)
Q Consensus 83 ~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~llvlD~~~ 136 (183)
+.-+-..++....... ...+++++....++-+.++++|+++
T Consensus 248 --------lRvvGseLiQkylGdG-----pklvRqlF~vA~e~apSIvFiDEId 288 (440)
T KOG0726|consen 248 --------LRVVGSELIQKYLGDG-----PKLVRELFRVAEEHAPSIVFIDEID 288 (440)
T ss_pred --------hhhhhHHHHHHHhccc-----hHHHHHHHHHHHhcCCceEEeehhh
Confidence 1112233443333322 2345667776667889999999987
No 261
>PRK15056 manganese/iron transporter ATP-binding protein; Provisional
Probab=98.10 E-value=2.2e-05 Score=60.43 Aligned_cols=26 Identities=31% Similarity=0.457 Sum_probs=22.9
Q ss_pred CccEEEEEeCCCCcHHHHHHHHHhHH
Q 035585 46 NVNIVGVYGMGGIGKTTLVKEFARQA 71 (183)
Q Consensus 46 ~~~~v~i~G~~G~GKTtL~~~~~~~~ 71 (183)
+...++|.|++|+|||||++.+....
T Consensus 32 ~Ge~~~l~G~nGsGKSTLl~~l~Gl~ 57 (272)
T PRK15056 32 GGSIAALVGVNGSGKSTLFKALMGFV 57 (272)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 45789999999999999999998654
No 262
>PRK13409 putative ATPase RIL; Provisional
Probab=98.10 E-value=2.4e-05 Score=66.48 Aligned_cols=126 Identities=21% Similarity=0.251 Sum_probs=65.8
Q ss_pred CccEEEEEeCCCCcHHHHHHHHHhHHhhhh---ccc-ceEEEEecCC------cCHHHHH-------------HHHHHHh
Q 035585 46 NVNIVGVYGMGGIGKTTLVKEFARQASEEK---LFD-QVVFSEVSQT------PDIKKIH-------------GEIAEKL 102 (183)
Q Consensus 46 ~~~~v~i~G~~G~GKTtL~~~~~~~~~~~~---~~~-~~~~~~~~~~------~~~~~~~-------------~~i~~~l 102 (183)
+..+++|.|++|+|||||++.++..+.... .+. .+.| .++. .+..+.. ..+++.+
T Consensus 364 ~Geiv~l~G~NGsGKSTLlk~L~Gl~~p~~G~I~~~~~i~y--~~Q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~L~~l 441 (590)
T PRK13409 364 EGEVIGIVGPNGIGKTTFAKLLAGVLKPDEGEVDPELKISY--KPQYIKPDYDGTVEDLLRSITDDLGSSYYKSEIIKPL 441 (590)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEEeeeEEE--ecccccCCCCCcHHHHHHHHhhhcChHHHHHHHHHHC
Confidence 446899999999999999999997764321 010 1111 1221 1112111 1222222
Q ss_pred CCCc------hhHHHHHHHHHHHHHHhcCCeEEEEEeCCCCcccccc---cCcCCCC--CCCCcEEEEEecChHHHhhcC
Q 035585 103 GLEF------SEEAESRRASRLYERLKKEKMILVILDNIWKYLDLET---VGIPFGD--DHRGCKLLLTARDCNVLLNMS 171 (183)
Q Consensus 103 ~~~~------~~~~~~~~~~~~~~~~~~~~~~llvlD~~~~~~~~~~---l~~~~~~--~~~~~~iiitsr~~~~~~~~~ 171 (183)
+... ...+..+.....+......++-++++||.....+... +...+.. ...+..+|++|||...+..+.
T Consensus 442 ~l~~~~~~~~~~LSGGe~QRvaiAraL~~~p~llLLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tviivsHD~~~~~~~a 521 (590)
T PRK13409 442 QLERLLDKNVKDLSGGELQRVAIAACLSRDADLYLLDEPSAHLDVEQRLAVAKAIRRIAEEREATALVVDHDIYMIDYIS 521 (590)
T ss_pred CCHHHHhCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhC
Confidence 2210 0011112222222233337889999999876644222 2222221 123567999999999887665
Q ss_pred CC
Q 035585 172 LC 173 (183)
Q Consensus 172 ~~ 173 (183)
..
T Consensus 522 Dr 523 (590)
T PRK13409 522 DR 523 (590)
T ss_pred CE
Confidence 53
No 263
>KOG0927 consensus Predicted transporter (ABC superfamily) [General function prediction only]
Probab=98.10 E-value=8.2e-06 Score=67.05 Aligned_cols=52 Identities=21% Similarity=0.156 Sum_probs=39.1
Q ss_pred CCeEEEEEeCCCCcccccccCc---CCCCCCCCcEEEEEecChHHHhhcCCCCcch
Q 035585 125 EKMILVILDNIWKYLDLETVGI---PFGDDHRGCKLLLTARDCNVLLNMSLCRSEE 177 (183)
Q Consensus 125 ~~~~llvlD~~~~~~~~~~l~~---~~~~~~~~~~iiitsr~~~~~~~~~~~~~~~ 177 (183)
.++.||+|||..++.+++.+.. .+.....+ .++|++|+..++..++++.+..
T Consensus 238 ~kP~LLLLDEPtnhLDleA~~wLee~L~k~d~~-~lVi~sh~QDfln~vCT~Ii~l 292 (614)
T KOG0927|consen 238 QKPDLLLLDEPTNHLDLEAIVWLEEYLAKYDRI-ILVIVSHSQDFLNGVCTNIIHL 292 (614)
T ss_pred cCCCEEEecCCccCCCHHHHHHHHHHHHhccCc-eEEEEecchhhhhhHhhhhhee
Confidence 8899999999998877655522 22233333 6999999999999999877654
No 264
>cd03220 ABC_KpsT_Wzt ABC_KpsT_Wzt The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export. Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenzae) and a cytoplasmic membrane protein MPA2.
Probab=98.10 E-value=3.5e-05 Score=57.66 Aligned_cols=27 Identities=30% Similarity=0.453 Sum_probs=23.6
Q ss_pred CccEEEEEeCCCCcHHHHHHHHHhHHh
Q 035585 46 NVNIVGVYGMGGIGKTTLVKEFARQAS 72 (183)
Q Consensus 46 ~~~~v~i~G~~G~GKTtL~~~~~~~~~ 72 (183)
+...++|.|++|+|||||++.+.....
T Consensus 47 ~Ge~~~i~G~nGsGKSTLl~~l~G~~~ 73 (224)
T cd03220 47 RGERIGLIGRNGAGKSTLLRLLAGIYP 73 (224)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 457899999999999999999987654
No 265
>cd03266 ABC_NatA_sodium_exporter NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilus, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single intergral membrane protein.
Probab=98.09 E-value=8.9e-06 Score=60.43 Aligned_cols=27 Identities=30% Similarity=0.438 Sum_probs=23.4
Q ss_pred CccEEEEEeCCCCcHHHHHHHHHhHHh
Q 035585 46 NVNIVGVYGMGGIGKTTLVKEFARQAS 72 (183)
Q Consensus 46 ~~~~v~i~G~~G~GKTtL~~~~~~~~~ 72 (183)
+...++|.|++|+|||||++.+.....
T Consensus 30 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~~ 56 (218)
T cd03266 30 PGEVTGLLGPNGAGKTTTLRMLAGLLE 56 (218)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCcC
Confidence 447899999999999999999987653
No 266
>PRK12727 flagellar biosynthesis regulator FlhF; Provisional
Probab=98.09 E-value=3.8e-05 Score=63.83 Aligned_cols=89 Identities=20% Similarity=0.291 Sum_probs=47.4
Q ss_pred CccEEEEEeCCCCcHHHHHHHHHhHHhhhhcccceEEEEecCC-cCHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHHhc
Q 035585 46 NVNIVGVYGMGGIGKTTLVKEFARQASEEKLFDQVVFSEVSQT-PDIKKIHGEIAEKLGLEFSEEAESRRASRLYERLKK 124 (183)
Q Consensus 46 ~~~~v~i~G~~G~GKTtL~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~ 124 (183)
...+++|+|++|+||||++..+...+........+.+++.... ....+.+....+.++...........+...+..+
T Consensus 349 ~G~vIaLVGPtGvGKTTtaakLAa~la~~~~gkkVaLIdtDtyRigA~EQLk~ya~iLgv~v~~a~d~~~L~~aL~~l-- 426 (559)
T PRK12727 349 RGGVIALVGPTGAGKTTTIAKLAQRFAAQHAPRDVALVTTDTQRVGGREQLHSYGRQLGIAVHEADSAESLLDLLERL-- 426 (559)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHHHhcCCCceEEEecccccccHHHHHHHhhcccCceeEecCcHHHHHHHHHHh--
Confidence 4578999999999999999999887655422234555555332 1222333333333333222221122222333333
Q ss_pred CCeEEEEEeCCC
Q 035585 125 EKMILVILDNIW 136 (183)
Q Consensus 125 ~~~~llvlD~~~ 136 (183)
...-+|+||...
T Consensus 427 ~~~DLVLIDTaG 438 (559)
T PRK12727 427 RDYKLVLIDTAG 438 (559)
T ss_pred ccCCEEEecCCC
Confidence 234566666653
No 267
>cd03280 ABC_MutS2 MutS2 homologs in bacteria and eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, a
Probab=98.09 E-value=3.9e-06 Score=61.66 Aligned_cols=21 Identities=24% Similarity=0.352 Sum_probs=19.8
Q ss_pred cEEEEEeCCCCcHHHHHHHHH
Q 035585 48 NIVGVYGMGGIGKTTLVKEFA 68 (183)
Q Consensus 48 ~~v~i~G~~G~GKTtL~~~~~ 68 (183)
+.++|+|++|+|||||++.+.
T Consensus 29 ~~~~ltG~Ng~GKStll~~i~ 49 (200)
T cd03280 29 RVLVITGPNAGGKTVTLKTLG 49 (200)
T ss_pred eEEEEECCCCCChHHHHHHHH
Confidence 589999999999999999987
No 268
>cd03254 ABCC_Glucan_exporter_like Glucan exporter ATP-binding protein. In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virluence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.09 E-value=1.9e-05 Score=59.10 Aligned_cols=27 Identities=33% Similarity=0.402 Sum_probs=23.3
Q ss_pred CccEEEEEeCCCCcHHHHHHHHHhHHh
Q 035585 46 NVNIVGVYGMGGIGKTTLVKEFARQAS 72 (183)
Q Consensus 46 ~~~~v~i~G~~G~GKTtL~~~~~~~~~ 72 (183)
....++|.|++|+|||||++.+.....
T Consensus 28 ~G~~~~i~G~nGsGKSTLl~~l~G~~~ 54 (229)
T cd03254 28 PGETVAIVGPTGAGKTTLINLLMRFYD 54 (229)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCcC
Confidence 446899999999999999999986653
No 269
>KOG0066 consensus eIF2-interacting protein ABC50 (ABC superfamily) [Translation, ribosomal structure and biogenesis]
Probab=98.09 E-value=2.7e-06 Score=68.56 Aligned_cols=120 Identities=16% Similarity=0.217 Sum_probs=64.9
Q ss_pred cEEEEEeCCCCcHHHHHHHHHhHHhhhh------cccceEEEEecCC------cCHHHHH-----------HHHHHHhCC
Q 035585 48 NIVGVYGMGGIGKTTLVKEFARQASEEK------LFDQVVFSEVSQT------PDIKKIH-----------GEIAEKLGL 104 (183)
Q Consensus 48 ~~v~i~G~~G~GKTtL~~~~~~~~~~~~------~~~~~~~~~~~~~------~~~~~~~-----------~~i~~~l~~ 104 (183)
.-|+|+||+|+|||||++.+...+.... +.-.+-|++-... .+..+.+ +.-+..++.
T Consensus 614 SRiaIVGPNGVGKSTlLkLL~Gkl~P~~GE~RKnhrL~iG~FdQh~~E~L~~Eetp~EyLqr~FNlpyq~ARK~LG~fGL 693 (807)
T KOG0066|consen 614 SRIAIVGPNGVGKSTLLKLLIGKLDPNDGELRKNHRLRIGWFDQHANEALNGEETPVEYLQRKFNLPYQEARKQLGTFGL 693 (807)
T ss_pred ceeEEECCCCccHHHHHHHHhcCCCCCcchhhccceeeeechhhhhHHhhccccCHHHHHHHhcCCChHHHHHHhhhhhh
Confidence 3589999999999999999988775431 2223455432111 1111111 111112211
Q ss_pred Cch-------hHHHHHHHHHHHHHHhcCCeEEEEEeCCCCcccccccCcC--CCCCCCCcEEEEEecChHHHh
Q 035585 105 EFS-------EEAESRRASRLYERLKKEKMILVILDNIWKYLDLETVGIP--FGDDHRGCKLLLTARDCNVLL 168 (183)
Q Consensus 105 ~~~-------~~~~~~~~~~~~~~~~~~~~~llvlD~~~~~~~~~~l~~~--~~~~~~~~~iiitsr~~~~~~ 168 (183)
... ..+.....+-.+..+....+-+||||+..+-.+++++-.. .-+...|. ||++|||..++.
T Consensus 694 ~sHAHTikikdLSGGQKaRValaeLal~~PDvlILDEPTNNLDIESIDALaEAIney~Gg-Vi~VsHDeRLi~ 765 (807)
T KOG0066|consen 694 ASHAHTIKIKDLSGGQKARVALAELALGGPDVLILDEPTNNLDIESIDALAEAINEYNGG-VIMVSHDERLIV 765 (807)
T ss_pred hhccceEeeeecCCcchHHHHHHHHhcCCCCEEEecCCCCCcchhhHHHHHHHHHhccCc-EEEEecccceee
Confidence 100 0111112233344455588999999998866555544221 12344565 888899988764
No 270
>cd01393 recA_like RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange. While prokaryotes have a single RecA protein, eukaryotes have multiple RecA homologs such as Rad51, DMC1 and Rad55/57. Archaea have the RecA-like homologs radA and radB.
Probab=98.09 E-value=5.1e-05 Score=56.62 Aligned_cols=46 Identities=26% Similarity=0.283 Sum_probs=33.6
Q ss_pred CccEEEEEeCCCCcHHHHHHHHHhHHhhhh----cccceEEEEecCCcCH
Q 035585 46 NVNIVGVYGMGGIGKTTLVKEFARQASEEK----LFDQVVFSEVSQTPDI 91 (183)
Q Consensus 46 ~~~~v~i~G~~G~GKTtL~~~~~~~~~~~~----~~~~~~~~~~~~~~~~ 91 (183)
...++.|+|++|+|||+|+.+++....... .-..++|++.......
T Consensus 18 ~g~v~~I~G~~GsGKT~l~~~ia~~~~~~~~~~g~~~~v~yi~~e~~~~~ 67 (226)
T cd01393 18 TGRITEIFGEFGSGKTQLCLQLAVEAQLPGELGGLEGKVVYIDTEGAFRP 67 (226)
T ss_pred CCcEEEEeCCCCCChhHHHHHHHHHhhcccccCCCcceEEEEecCCCCCH
Confidence 447899999999999999999987654331 0145788887665443
No 271
>cd03262 ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, repectively. Histidine permease is a multisubunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryote extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQM
Probab=98.09 E-value=1.5e-05 Score=58.90 Aligned_cols=27 Identities=26% Similarity=0.369 Sum_probs=23.4
Q ss_pred CccEEEEEeCCCCcHHHHHHHHHhHHh
Q 035585 46 NVNIVGVYGMGGIGKTTLVKEFARQAS 72 (183)
Q Consensus 46 ~~~~v~i~G~~G~GKTtL~~~~~~~~~ 72 (183)
+...++|.|++|+|||||++.++..+.
T Consensus 25 ~G~~~~l~G~nGsGKSTLl~~l~G~~~ 51 (213)
T cd03262 25 KGEVVVIIGPSGSGKSTLLRCINLLEE 51 (213)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 457899999999999999999986553
No 272
>cd03245 ABCC_bacteriocin_exporters ABC-type bacteriocin exporters. Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane.
Probab=98.09 E-value=2e-05 Score=58.64 Aligned_cols=27 Identities=33% Similarity=0.316 Sum_probs=23.4
Q ss_pred CCccEEEEEeCCCCcHHHHHHHHHhHH
Q 035585 45 VNVNIVGVYGMGGIGKTTLVKEFARQA 71 (183)
Q Consensus 45 ~~~~~v~i~G~~G~GKTtL~~~~~~~~ 71 (183)
.+..+++|.|++|+|||||++.+....
T Consensus 28 ~~G~~~~i~G~nGsGKSTLl~~i~G~~ 54 (220)
T cd03245 28 RAGEKVAIIGRVGSGKSTLLKLLAGLY 54 (220)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcCc
Confidence 345789999999999999999998654
No 273
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A ....
Probab=98.09 E-value=4e-06 Score=56.31 Aligned_cols=24 Identities=38% Similarity=0.563 Sum_probs=21.6
Q ss_pred EEEEEeCCCCcHHHHHHHHHhHHh
Q 035585 49 IVGVYGMGGIGKTTLVKEFARQAS 72 (183)
Q Consensus 49 ~v~i~G~~G~GKTtL~~~~~~~~~ 72 (183)
+++|.|++|+||||+++.+.+++.
T Consensus 1 vI~I~G~~gsGKST~a~~La~~~~ 24 (121)
T PF13207_consen 1 VIIISGPPGSGKSTLAKELAERLG 24 (121)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHT
T ss_pred CEEEECCCCCCHHHHHHHHHHHHC
Confidence 478999999999999999998763
No 274
>cd00983 recA RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange.
Probab=98.08 E-value=2.4e-05 Score=61.46 Aligned_cols=88 Identities=17% Similarity=0.214 Sum_probs=53.0
Q ss_pred CccEEEEEeCCCCcHHHHHHHHHhHHhhhhcccceEEEEecCCcCHHHHHHHH---HHHhCCCchhHHHHHHHHHHHHHH
Q 035585 46 NVNIVGVYGMGGIGKTTLVKEFARQASEEKLFDQVVFSEVSQTPDIKKIHGEI---AEKLGLEFSEEAESRRASRLYERL 122 (183)
Q Consensus 46 ~~~~v~i~G~~G~GKTtL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i---~~~l~~~~~~~~~~~~~~~~~~~~ 122 (183)
+.+++.|+|++|+|||||+.+++...... ...++|++.....+.. .+..+ ++.+....+. ...+....+...+
T Consensus 54 ~G~iteI~Gp~GsGKTtLal~~~~~~~~~--g~~~vyId~E~~~~~~-~a~~lGvd~~~l~v~~p~-~~eq~l~i~~~li 129 (325)
T cd00983 54 KGRIIEIYGPESSGKTTLALHAIAEAQKL--GGTVAFIDAEHALDPV-YAKKLGVDLDNLLISQPD-TGEQALEIADSLV 129 (325)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHc--CCCEEEECccccHHHH-HHHHcCCCHHHheecCCC-CHHHHHHHHHHHH
Confidence 45689999999999999999988776543 4457888876654432 11221 1222222222 1222233333334
Q ss_pred hcCCeEEEEEeCCCC
Q 035585 123 KKEKMILVILDNIWK 137 (183)
Q Consensus 123 ~~~~~~llvlD~~~~ 137 (183)
++...-+||+|.+..
T Consensus 130 ~s~~~~lIVIDSvaa 144 (325)
T cd00983 130 RSGAVDLIVVDSVAA 144 (325)
T ss_pred hccCCCEEEEcchHh
Confidence 556788999998753
No 275
>cd03301 ABC_MalK_N The N-terminal ATPase domain of the maltose transporter, MalK. ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed.
Probab=98.08 E-value=6e-06 Score=61.13 Aligned_cols=27 Identities=30% Similarity=0.369 Sum_probs=23.5
Q ss_pred CccEEEEEeCCCCcHHHHHHHHHhHHh
Q 035585 46 NVNIVGVYGMGGIGKTTLVKEFARQAS 72 (183)
Q Consensus 46 ~~~~v~i~G~~G~GKTtL~~~~~~~~~ 72 (183)
+...++|.|++|+|||||++.+...+.
T Consensus 25 ~Ge~~~l~G~nGsGKSTLl~~l~G~~~ 51 (213)
T cd03301 25 DGEFVVLLGPSGCGKTTTLRMIAGLEE 51 (213)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCCC
Confidence 456899999999999999999987653
No 276
>PRK10908 cell division protein FtsE; Provisional
Probab=98.08 E-value=1.2e-05 Score=59.91 Aligned_cols=27 Identities=26% Similarity=0.297 Sum_probs=23.3
Q ss_pred CccEEEEEeCCCCcHHHHHHHHHhHHh
Q 035585 46 NVNIVGVYGMGGIGKTTLVKEFARQAS 72 (183)
Q Consensus 46 ~~~~v~i~G~~G~GKTtL~~~~~~~~~ 72 (183)
+...++|.|++|+|||||++.++....
T Consensus 27 ~Ge~~~i~G~nGsGKSTLl~~l~G~~~ 53 (222)
T PRK10908 27 PGEMAFLTGHSGAGKSTLLKLICGIER 53 (222)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 457899999999999999999986543
No 277
>PRK06921 hypothetical protein; Provisional
Probab=98.08 E-value=3.4e-05 Score=59.22 Aligned_cols=72 Identities=18% Similarity=0.319 Sum_probs=45.1
Q ss_pred CccEEEEEeCCCCcHHHHHHHHHhHHhhhhcccceEEEEecCCcCHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHHhcC
Q 035585 46 NVNIVGVYGMGGIGKTTLVKEFARQASEEKLFDQVVFSEVSQTPDIKKIHGEIAEKLGLEFSEEAESRRASRLYERLKKE 125 (183)
Q Consensus 46 ~~~~v~i~G~~G~GKTtL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~ 125 (183)
....+.++|++|+|||+|+.++++.+..+ ....++|+.. .+++..+...+ ......+..+ .
T Consensus 116 ~~~~l~l~G~~G~GKThLa~aia~~l~~~-~g~~v~y~~~------~~l~~~l~~~~----------~~~~~~~~~~--~ 176 (266)
T PRK06921 116 RKNSIALLGQPGSGKTHLLTAAANELMRK-KGVPVLYFPF------VEGFGDLKDDF----------DLLEAKLNRM--K 176 (266)
T ss_pred CCCeEEEECCCCCcHHHHHHHHHHHHhhh-cCceEEEEEH------HHHHHHHHHHH----------HHHHHHHHHh--c
Confidence 45789999999999999999999987654 1234566553 22233332211 1112233333 4
Q ss_pred CeEEEEEeCCC
Q 035585 126 KMILVILDNIW 136 (183)
Q Consensus 126 ~~~llvlD~~~ 136 (183)
+.-+|||||++
T Consensus 177 ~~dlLiIDDl~ 187 (266)
T PRK06921 177 KVEVLFIDDLF 187 (266)
T ss_pred CCCEEEEeccc
Confidence 56799999994
No 278
>PRK10744 pstB phosphate transporter ATP-binding protein; Provisional
Probab=98.08 E-value=1.8e-05 Score=60.52 Aligned_cols=26 Identities=31% Similarity=0.549 Sum_probs=23.1
Q ss_pred CccEEEEEeCCCCcHHHHHHHHHhHH
Q 035585 46 NVNIVGVYGMGGIGKTTLVKEFARQA 71 (183)
Q Consensus 46 ~~~~v~i~G~~G~GKTtL~~~~~~~~ 71 (183)
+..+++|+|++|+|||||++.+...+
T Consensus 38 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 63 (260)
T PRK10744 38 KNQVTAFIGPSGCGKSTLLRTFNRMY 63 (260)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhccc
Confidence 45789999999999999999998765
No 279
>COG1066 Sms Predicted ATP-dependent serine protease [Posttranslational modification, protein turnover, chaperones]
Probab=98.08 E-value=2e-05 Score=63.02 Aligned_cols=87 Identities=23% Similarity=0.289 Sum_probs=61.4
Q ss_pred CccEEEEEeCCCCcHHHHHHHHHhHHhhhhcccceEEEEecCCcCHHHHHHHHHHHhCCCchh--HHHHHHHHHHHHHHh
Q 035585 46 NVNIVGVYGMGGIGKTTLVKEFARQASEEKLFDQVVFSEVSQTPDIKKIHGEIAEKLGLEFSE--EAESRRASRLYERLK 123 (183)
Q Consensus 46 ~~~~v~i~G~~G~GKTtL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~--~~~~~~~~~~~~~~~ 123 (183)
+..+++|-|.||+|||||+.+++.++... . .++|+.-..... ..+.-+++++..... .-.+..++.++..+.
T Consensus 92 ~Gs~iLIgGdPGIGKSTLLLQva~~lA~~--~-~vLYVsGEES~~---QiklRA~RL~~~~~~l~l~aEt~~e~I~~~l~ 165 (456)
T COG1066 92 PGSVILIGGDPGIGKSTLLLQVAARLAKR--G-KVLYVSGEESLQ---QIKLRADRLGLPTNNLYLLAETNLEDIIAELE 165 (456)
T ss_pred cccEEEEccCCCCCHHHHHHHHHHHHHhc--C-cEEEEeCCcCHH---HHHHHHHHhCCCccceEEehhcCHHHHHHHHH
Confidence 55789999999999999999999999876 2 678866655433 223445566543322 223334566777777
Q ss_pred cCCeEEEEEeCCCCc
Q 035585 124 KEKMILVILDNIWKY 138 (183)
Q Consensus 124 ~~~~~llvlD~~~~~ 138 (183)
+.++-++|+|-++.+
T Consensus 166 ~~~p~lvVIDSIQT~ 180 (456)
T COG1066 166 QEKPDLVVIDSIQTL 180 (456)
T ss_pred hcCCCEEEEecccee
Confidence 789999999998754
No 280
>KOG2228 consensus Origin recognition complex, subunit 4 [Replication, recombination and repair]
Probab=98.08 E-value=1.8e-05 Score=61.66 Aligned_cols=142 Identities=20% Similarity=0.155 Sum_probs=82.6
Q ss_pred CcccccchHHHHHHHHHHhc----cCCccEEEEEeCCCCcHHHHHHHHHhHHhhhhcccceEEEEecCCc-----CHHHH
Q 035585 24 GYEAFKSRLSTLKSIQDALT----DVNVNIVGVYGMGGIGKTTLVKEFARQASEEKLFDQVVFSEVSQTP-----DIKKI 94 (183)
Q Consensus 24 ~~~~~~gR~~~l~~l~~~l~----~~~~~~v~i~G~~G~GKTtL~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~ 94 (183)
+...++|-+++...+-.++. -.....+.++||.|+|||+|......+... +....+-+.....- .+..+
T Consensus 22 ~~~~l~g~~~~~~~l~~~lkqt~~~gEsnsviiigprgsgkT~li~~~Ls~~q~--~~E~~l~v~Lng~~~~dk~al~~I 99 (408)
T KOG2228|consen 22 PHINLFGVQDEQKHLSELLKQTILHGESNSVIIIGPRGSGKTILIDTRLSDIQE--NGENFLLVRLNGELQTDKIALKGI 99 (408)
T ss_pred CCcceeehHHHHHHHHHHHHHHHHhcCCCceEEEccCCCCceEeeHHHHhhHHh--cCCeEEEEEECccchhhHHHHHHH
Confidence 45568888888888887775 244567899999999999999888877222 23334444444332 34445
Q ss_pred HHHHHHHhCCCchh-HHHHHHHHHHHHHHhc-----CCeEEEEEeCCCCccc--ccccCcC-----CCCCCCCcEEEEEe
Q 035585 95 HGEIAEKLGLEFSE-EAESRRASRLYERLKK-----EKMILVILDNIWKYLD--LETVGIP-----FGDDHRGCKLLLTA 161 (183)
Q Consensus 95 ~~~i~~~l~~~~~~-~~~~~~~~~~~~~~~~-----~~~~llvlD~~~~~~~--~~~l~~~-----~~~~~~~~~iiits 161 (183)
.+++..++...... .+..+.+..++..+.. ..++++|+||+|--.. ...+++. -....|=|.+-+||
T Consensus 100 ~rql~~e~~~~~k~~gsfte~l~~lL~~L~~~~~~t~~~ViFIldEfDlf~~h~rQtllYnlfDisqs~r~Piciig~Tt 179 (408)
T KOG2228|consen 100 TRQLALELNRIVKSFGSFTENLSKLLEALKKGDETTSGKVIFILDEFDLFAPHSRQTLLYNLFDISQSARAPICIIGVTT 179 (408)
T ss_pred HHHHHHHHhhhheeecccchhHHHHHHHHhcCCCCCCceEEEEeehhhccccchhhHHHHHHHHHHhhcCCCeEEEEeec
Confidence 55554444322111 2223334444444432 4568999999874321 1111111 12345667888899
Q ss_pred cChHHH
Q 035585 162 RDCNVL 167 (183)
Q Consensus 162 r~~~~~ 167 (183)
|-+.+.
T Consensus 180 rld~lE 185 (408)
T KOG2228|consen 180 RLDILE 185 (408)
T ss_pred cccHHH
Confidence 866543
No 281
>COG1223 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=98.07 E-value=2.1e-05 Score=59.44 Aligned_cols=123 Identities=20% Similarity=0.298 Sum_probs=73.5
Q ss_pred ccccchHHHH---HHHHHHhcc------CCccEEEEEeCCCCcHHHHHHHHHhHHhhhhcccceEEEEecCCcCHHHHHH
Q 035585 26 EAFKSRLSTL---KSIQDALTD------VNVNIVGVYGMGGIGKTTLVKEFARQASEEKLFDQVVFSEVSQTPDIKKIHG 96 (183)
Q Consensus 26 ~~~~gR~~~l---~~l~~~l~~------~~~~~v~i~G~~G~GKTtL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 (183)
.+.+|.++.. .-|+++|++ =.++.|+.+||+|+|||.+|++++++.+.. + +.+.+ .
T Consensus 121 ddViGqEeAK~kcrli~~yLenPe~Fg~WAPknVLFyGppGTGKTm~Akalane~kvp--~---l~vka------t---- 185 (368)
T COG1223 121 DDVIGQEEAKRKCRLIMEYLENPERFGDWAPKNVLFYGPPGTGKTMMAKALANEAKVP--L---LLVKA------T---- 185 (368)
T ss_pred hhhhchHHHHHHHHHHHHHhhChHHhcccCcceeEEECCCCccHHHHHHHHhcccCCc--e---EEech------H----
Confidence 3445554443 335566653 256789999999999999999999986653 1 11111 1
Q ss_pred HHHHHhCCCchhHHHHHHHHHHHHHHhcCCeEEEEEeCCCCc--------------ccccccCcCCC--CCCCCcEEEEE
Q 035585 97 EIAEKLGLEFSEEAESRRASRLYERLKKEKMILVILDNIWKY--------------LDLETVGIPFG--DDHRGCKLLLT 160 (183)
Q Consensus 97 ~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~llvlD~~~~~--------------~~~~~l~~~~~--~~~~~~~iiit 160 (183)
.+ ++..+. .....+.+++....+--+.++.||++|-. +.++.|+..++ ....|...|-.
T Consensus 186 ~l---iGehVG--dgar~Ihely~rA~~~aPcivFiDE~DAiaLdRryQelRGDVsEiVNALLTelDgi~eneGVvtIaa 260 (368)
T COG1223 186 EL---IGEHVG--DGARRIHELYERARKAAPCIVFIDELDAIALDRRYQELRGDVSEIVNALLTELDGIKENEGVVTIAA 260 (368)
T ss_pred HH---HHHHhh--hHHHHHHHHHHHHHhcCCeEEEehhhhhhhhhhhHHHhcccHHHHHHHHHHhccCcccCCceEEEee
Confidence 11 111111 23456677888887788999999998733 11344444443 23446555555
Q ss_pred ecChHHHh
Q 035585 161 ARDCNVLL 168 (183)
Q Consensus 161 sr~~~~~~ 168 (183)
|...+++.
T Consensus 261 TN~p~~LD 268 (368)
T COG1223 261 TNRPELLD 268 (368)
T ss_pred cCChhhcC
Confidence 66555555
No 282
>PRK13409 putative ATPase RIL; Provisional
Probab=98.07 E-value=2.1e-05 Score=66.84 Aligned_cols=27 Identities=37% Similarity=0.553 Sum_probs=23.2
Q ss_pred CccEEEEEeCCCCcHHHHHHHHHhHHh
Q 035585 46 NVNIVGVYGMGGIGKTTLVKEFARQAS 72 (183)
Q Consensus 46 ~~~~v~i~G~~G~GKTtL~~~~~~~~~ 72 (183)
+..+++|+|++|+|||||++.+...+.
T Consensus 98 ~Gev~gLvG~NGaGKSTLlkiL~G~l~ 124 (590)
T PRK13409 98 EGKVTGILGPNGIGKTTAVKILSGELI 124 (590)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCcc
Confidence 446899999999999999999987554
No 283
>cd01121 Sms Sms (bacterial radA) DNA repair protein. This protein is not related to archael radA any more than is to other RecA-like NTPases. Sms has a role in recombination and recombinational repair and is responsible for the stabilization or processing of branched DNA molecules.
Probab=98.07 E-value=1.7e-05 Score=63.57 Aligned_cols=88 Identities=23% Similarity=0.326 Sum_probs=54.0
Q ss_pred CccEEEEEeCCCCcHHHHHHHHHhHHhhhhcccceEEEEecCCcCHHHHHHHHHHHhCCCchhH--HHHHHHHHHHHHHh
Q 035585 46 NVNIVGVYGMGGIGKTTLVKEFARQASEEKLFDQVVFSEVSQTPDIKKIHGEIAEKLGLEFSEE--AESRRASRLYERLK 123 (183)
Q Consensus 46 ~~~~v~i~G~~G~GKTtL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~--~~~~~~~~~~~~~~ 123 (183)
+..+++|.|++|+|||||+.+++...... ...++|+...... ..+ ..-+++++...... ........+.+.+.
T Consensus 81 ~GslvLI~G~pG~GKStLllq~a~~~a~~--g~~VlYvs~EEs~--~qi-~~Ra~rlg~~~~~l~l~~e~~le~I~~~i~ 155 (372)
T cd01121 81 PGSVILIGGDPGIGKSTLLLQVAARLAKR--GGKVLYVSGEESP--EQI-KLRADRLGISTENLYLLAETNLEDILASIE 155 (372)
T ss_pred CCeEEEEEeCCCCCHHHHHHHHHHHHHhc--CCeEEEEECCcCH--HHH-HHHHHHcCCCcccEEEEccCcHHHHHHHHH
Confidence 34689999999999999999999887654 3457787665332 222 22233444322110 01112344555555
Q ss_pred cCCeEEEEEeCCCCc
Q 035585 124 KEKMILVILDNIWKY 138 (183)
Q Consensus 124 ~~~~~llvlD~~~~~ 138 (183)
..+.-+||||.++.+
T Consensus 156 ~~~~~lVVIDSIq~l 170 (372)
T cd01121 156 ELKPDLVIIDSIQTV 170 (372)
T ss_pred hcCCcEEEEcchHHh
Confidence 567889999998644
No 284
>TIGR02673 FtsE cell division ATP-binding protein FtsE. This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein.
Probab=98.07 E-value=1.1e-05 Score=59.73 Aligned_cols=26 Identities=31% Similarity=0.318 Sum_probs=22.9
Q ss_pred CccEEEEEeCCCCcHHHHHHHHHhHH
Q 035585 46 NVNIVGVYGMGGIGKTTLVKEFARQA 71 (183)
Q Consensus 46 ~~~~v~i~G~~G~GKTtL~~~~~~~~ 71 (183)
+...++|.|++|+|||||++.+...+
T Consensus 27 ~G~~~~l~G~nGsGKSTLl~~i~Gl~ 52 (214)
T TIGR02673 27 KGEFLFLTGPSGAGKTTLLKLLYGAL 52 (214)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 45789999999999999999998654
No 285
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=98.07 E-value=3.2e-05 Score=67.47 Aligned_cols=93 Identities=18% Similarity=0.263 Sum_probs=55.5
Q ss_pred ccccchHHHHHHHHHHhc-------------cCCccEEEEEeCCCCcHHHHHHHHHhHHhhhhcccceEEEEecCCcCHH
Q 035585 26 EAFKSRLSTLKSIQDALT-------------DVNVNIVGVYGMGGIGKTTLVKEFARQASEEKLFDQVVFSEVSQTPDIK 92 (183)
Q Consensus 26 ~~~~gR~~~l~~l~~~l~-------------~~~~~~v~i~G~~G~GKTtL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 92 (183)
..+.|.+...+.|.+.+. -..+..++++||+|+|||++|+.++...... | +.+..+
T Consensus 453 ~di~g~~~~k~~l~~~v~~~~~~~~~~~~~g~~~~~giLL~GppGtGKT~lakalA~e~~~~--f---i~v~~~------ 521 (733)
T TIGR01243 453 SDIGGLEEVKQELREAVEWPLKHPEIFEKMGIRPPKGVLLFGPPGTGKTLLAKAVATESGAN--F---IAVRGP------ 521 (733)
T ss_pred hhcccHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhcCCC--E---EEEehH------
Confidence 334565555555555432 1244568999999999999999999876532 1 222211
Q ss_pred HHHHHHHHHhCCCchhHHHHHHHHHHHHHHhcCCeEEEEEeCCCCc
Q 035585 93 KIHGEIAEKLGLEFSEEAESRRASRLYERLKKEKMILVILDNIWKY 138 (183)
Q Consensus 93 ~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~llvlD~~~~~ 138 (183)
.+.... .+. ....+..++.......+.+|+|||++..
T Consensus 522 ----~l~~~~----vGe-se~~i~~~f~~A~~~~p~iifiDEid~l 558 (733)
T TIGR01243 522 ----EILSKW----VGE-SEKAIREIFRKARQAAPAIIFFDEIDAI 558 (733)
T ss_pred ----HHhhcc----cCc-HHHHHHHHHHHHHhcCCEEEEEEChhhh
Confidence 111111 111 1234456666666678899999999754
No 286
>cd03295 ABC_OpuCA_Osmoprotection OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment. ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.07 E-value=2.7e-05 Score=58.89 Aligned_cols=27 Identities=30% Similarity=0.346 Sum_probs=23.2
Q ss_pred CccEEEEEeCCCCcHHHHHHHHHhHHh
Q 035585 46 NVNIVGVYGMGGIGKTTLVKEFARQAS 72 (183)
Q Consensus 46 ~~~~v~i~G~~G~GKTtL~~~~~~~~~ 72 (183)
+..+++|.|++|+|||||++.++..+.
T Consensus 26 ~Ge~~~i~G~nGsGKSTLl~~l~G~~~ 52 (242)
T cd03295 26 KGEFLVLIGPSGSGKTTTMKMINRLIE 52 (242)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence 457899999999999999999986543
No 287
>PRK13651 cobalt transporter ATP-binding subunit; Provisional
Probab=98.07 E-value=9.8e-06 Score=63.45 Aligned_cols=26 Identities=23% Similarity=0.442 Sum_probs=22.8
Q ss_pred CccEEEEEeCCCCcHHHHHHHHHhHH
Q 035585 46 NVNIVGVYGMGGIGKTTLVKEFARQA 71 (183)
Q Consensus 46 ~~~~v~i~G~~G~GKTtL~~~~~~~~ 71 (183)
+...++|.|++|+|||||++.+...+
T Consensus 32 ~Ge~v~iiG~nGsGKSTLl~~L~Gl~ 57 (305)
T PRK13651 32 QGEFIAIIGQTGSGKTTFIEHLNALL 57 (305)
T ss_pred CCCEEEEECCCCCcHHHHHHHHhCCC
Confidence 45789999999999999999998654
No 288
>PRK09580 sufC cysteine desulfurase ATPase component; Reviewed
Probab=98.07 E-value=2.6e-05 Score=59.13 Aligned_cols=26 Identities=27% Similarity=0.409 Sum_probs=23.0
Q ss_pred CccEEEEEeCCCCcHHHHHHHHHhHH
Q 035585 46 NVNIVGVYGMGGIGKTTLVKEFARQA 71 (183)
Q Consensus 46 ~~~~v~i~G~~G~GKTtL~~~~~~~~ 71 (183)
+...++|.|++|+|||||++.+....
T Consensus 26 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 51 (248)
T PRK09580 26 PGEVHAIMGPNGSGKSTLSATLAGRE 51 (248)
T ss_pred CCCEEEEECCCCCCHHHHHHHHcCCc
Confidence 45789999999999999999998863
No 289
>cd03284 ABC_MutS1 MutS1 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clam
Probab=98.07 E-value=6.1e-06 Score=61.42 Aligned_cols=23 Identities=26% Similarity=0.319 Sum_probs=20.6
Q ss_pred ccEEEEEeCCCCcHHHHHHHHHh
Q 035585 47 VNIVGVYGMGGIGKTTLVKEFAR 69 (183)
Q Consensus 47 ~~~v~i~G~~G~GKTtL~~~~~~ 69 (183)
.++++|+|++|+||||+++.+..
T Consensus 30 ~~~~~l~Gpn~sGKstllr~i~~ 52 (216)
T cd03284 30 RQILLITGPNMAGKSTYLRQVAL 52 (216)
T ss_pred ceEEEEECCCCCChHHHHHHHHH
Confidence 37899999999999999999864
No 290
>PRK14086 dnaA chromosomal replication initiation protein; Provisional
Probab=98.07 E-value=8.7e-06 Score=68.66 Aligned_cols=100 Identities=19% Similarity=0.269 Sum_probs=55.6
Q ss_pred cEEEEEeCCCCcHHHHHHHHHhHHhhhhcccceEEEEecCCcCHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHHhcCCe
Q 035585 48 NIVGVYGMGGIGKTTLVKEFARQASEEKLFDQVVFSEVSQTPDIKKIHGEIAEKLGLEFSEEAESRRASRLYERLKKEKM 127 (183)
Q Consensus 48 ~~v~i~G~~G~GKTtL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 127 (183)
..++|+|++|+|||.|+..+.+..........++|+++. ++...+...+... ....+.+.+. +.
T Consensus 315 NpL~LyG~sGsGKTHLL~AIa~~a~~~~~g~~V~Yitae------ef~~el~~al~~~--------~~~~f~~~y~--~~ 378 (617)
T PRK14086 315 NPLFIYGESGLGKTHLLHAIGHYARRLYPGTRVRYVSSE------EFTNEFINSIRDG--------KGDSFRRRYR--EM 378 (617)
T ss_pred CcEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEeeHH------HHHHHHHHHHHhc--------cHHHHHHHhh--cC
Confidence 458999999999999999999987653222345665542 2333333322111 1122333332 35
Q ss_pred EEEEEeCCCCccc----ccccCcCCCCC-CCCcEEEEEecC
Q 035585 128 ILVILDNIWKYLD----LETVGIPFGDD-HRGCKLLLTARD 163 (183)
Q Consensus 128 ~llvlD~~~~~~~----~~~l~~~~~~~-~~~~~iiitsr~ 163 (183)
-+|+|||++.... .+.+...++.. ..+..||+||..
T Consensus 379 DLLlIDDIq~l~gke~tqeeLF~l~N~l~e~gk~IIITSd~ 419 (617)
T PRK14086 379 DILLVDDIQFLEDKESTQEEFFHTFNTLHNANKQIVLSSDR 419 (617)
T ss_pred CEEEEehhccccCCHHHHHHHHHHHHHHHhcCCCEEEecCC
Confidence 6899999985522 12222333221 224557777764
No 291
>PRK14247 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.07 E-value=1.9e-05 Score=59.98 Aligned_cols=27 Identities=33% Similarity=0.564 Sum_probs=23.6
Q ss_pred CccEEEEEeCCCCcHHHHHHHHHhHHh
Q 035585 46 NVNIVGVYGMGGIGKTTLVKEFARQAS 72 (183)
Q Consensus 46 ~~~~v~i~G~~G~GKTtL~~~~~~~~~ 72 (183)
+...++|.|++|+|||||++.+.....
T Consensus 28 ~Ge~~~i~G~nGsGKSTLl~~i~G~~~ 54 (250)
T PRK14247 28 DNTITALMGPSGSGKSTLLRVFNRLIE 54 (250)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhccCC
Confidence 457899999999999999999987654
No 292
>cd03253 ABCC_ATM1_transporter ATM1 is an ABC transporter that is expressed in the mitochondria. Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.07 E-value=2.3e-05 Score=58.92 Aligned_cols=27 Identities=26% Similarity=0.357 Sum_probs=23.6
Q ss_pred CccEEEEEeCCCCcHHHHHHHHHhHHh
Q 035585 46 NVNIVGVYGMGGIGKTTLVKEFARQAS 72 (183)
Q Consensus 46 ~~~~v~i~G~~G~GKTtL~~~~~~~~~ 72 (183)
+...++|.|++|+|||||++.+.....
T Consensus 26 ~Ge~~~l~G~nGsGKSTLl~~i~Gl~~ 52 (236)
T cd03253 26 AGKKVAIVGPSGSGKSTILRLLFRFYD 52 (236)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcccC
Confidence 457899999999999999999987653
No 293
>PRK09270 nucleoside triphosphate hydrolase domain-containing protein; Reviewed
Probab=98.07 E-value=4.8e-05 Score=57.07 Aligned_cols=30 Identities=30% Similarity=0.434 Sum_probs=26.6
Q ss_pred CCccEEEEEeCCCCcHHHHHHHHHhHHhhh
Q 035585 45 VNVNIVGVYGMGGIGKTTLVKEFARQASEE 74 (183)
Q Consensus 45 ~~~~~v~i~G~~G~GKTtL~~~~~~~~~~~ 74 (183)
.++.+++|.|++|+|||||++.+...+...
T Consensus 31 ~~~~iigi~G~~GsGKTTl~~~L~~~l~~~ 60 (229)
T PRK09270 31 QRRTIVGIAGPPGAGKSTLAEFLEALLQQD 60 (229)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHhhhc
Confidence 566799999999999999999999888764
No 294
>TIGR03411 urea_trans_UrtD urea ABC transporter, ATP-binding protein UrtD. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=98.07 E-value=2.2e-05 Score=59.28 Aligned_cols=26 Identities=23% Similarity=0.354 Sum_probs=22.8
Q ss_pred CccEEEEEeCCCCcHHHHHHHHHhHH
Q 035585 46 NVNIVGVYGMGGIGKTTLVKEFARQA 71 (183)
Q Consensus 46 ~~~~v~i~G~~G~GKTtL~~~~~~~~ 71 (183)
+...++|.|++|+|||||++.+...+
T Consensus 27 ~Ge~~~l~G~nGsGKSTLl~~l~G~~ 52 (242)
T TIGR03411 27 PGELRVIIGPNGAGKTTMMDVITGKT 52 (242)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 45789999999999999999998654
No 295
>PRK07261 topology modulation protein; Provisional
Probab=98.07 E-value=1.5e-05 Score=57.17 Aligned_cols=25 Identities=24% Similarity=0.518 Sum_probs=21.6
Q ss_pred EEEEEeCCCCcHHHHHHHHHhHHhh
Q 035585 49 IVGVYGMGGIGKTTLVKEFARQASE 73 (183)
Q Consensus 49 ~v~i~G~~G~GKTtL~~~~~~~~~~ 73 (183)
-++|+|++|+|||||++.+...+..
T Consensus 2 ri~i~G~~GsGKSTla~~l~~~~~~ 26 (171)
T PRK07261 2 KIAIIGYSGSGKSTLARKLSQHYNC 26 (171)
T ss_pred EEEEEcCCCCCHHHHHHHHHHHhCC
Confidence 4789999999999999999877643
No 296
>cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin. In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.07 E-value=9.2e-06 Score=60.50 Aligned_cols=27 Identities=33% Similarity=0.474 Sum_probs=23.3
Q ss_pred CccEEEEEeCCCCcHHHHHHHHHhHHh
Q 035585 46 NVNIVGVYGMGGIGKTTLVKEFARQAS 72 (183)
Q Consensus 46 ~~~~v~i~G~~G~GKTtL~~~~~~~~~ 72 (183)
+...++|.|++|+|||||++.++..+.
T Consensus 25 ~Ge~~~i~G~nGsGKSTLl~~i~G~~~ 51 (220)
T cd03265 25 RGEIFGLLGPNGAGKTTTIKMLTTLLK 51 (220)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 457899999999999999999987543
No 297
>TIGR03771 anch_rpt_ABC anchored repeat-type ABC transporter, ATP-binding subunit. This protein family is the ATP-binding cassette subunit of binding protein-dependent ABC transporter complex that strictly co-occurs with TIGR03769. TIGRFAMs model TIGR03769 describes a protein domain that occurs singly or as one of up to three repeats in proteins of a number of Actinobacteria, including Propionibacterium acnes KPA171202. The TIGR03769 domain occurs both in an adjacent gene for the substrate-binding protein and in additional (often nearby) proteins, often with LPXTG-like sortase recognition signals. Homologous ATP-binding subunits outside the scope of this family include manganese transporter MntA in Synechocystis sp. PCC 6803 and chelated iron transporter subunits. The function of this transporter complex is unknown.
Probab=98.07 E-value=2.3e-05 Score=58.53 Aligned_cols=27 Identities=30% Similarity=0.518 Sum_probs=23.3
Q ss_pred CccEEEEEeCCCCcHHHHHHHHHhHHh
Q 035585 46 NVNIVGVYGMGGIGKTTLVKEFARQAS 72 (183)
Q Consensus 46 ~~~~v~i~G~~G~GKTtL~~~~~~~~~ 72 (183)
+...++|.|++|+|||||++.+.....
T Consensus 5 ~Ge~~~l~G~nGsGKSTLl~~l~G~~~ 31 (223)
T TIGR03771 5 KGELLGLLGPNGAGKTTLLRAILGLIP 31 (223)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCCC
Confidence 347899999999999999999987553
No 298
>cd03249 ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1. In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another.
Probab=98.06 E-value=2.7e-05 Score=58.68 Aligned_cols=28 Identities=29% Similarity=0.342 Sum_probs=24.1
Q ss_pred CCccEEEEEeCCCCcHHHHHHHHHhHHh
Q 035585 45 VNVNIVGVYGMGGIGKTTLVKEFARQAS 72 (183)
Q Consensus 45 ~~~~~v~i~G~~G~GKTtL~~~~~~~~~ 72 (183)
.+..+++|.|++|+|||||++.+.....
T Consensus 27 ~~Ge~~~l~G~nGsGKSTLl~~i~G~~~ 54 (238)
T cd03249 27 PPGKTVALVGSSGCGKSTVVSLLERFYD 54 (238)
T ss_pred cCCCEEEEEeCCCCCHHHHHHHHhccCC
Confidence 3457999999999999999999987653
No 299
>PRK13647 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=98.06 E-value=2.4e-05 Score=60.33 Aligned_cols=27 Identities=22% Similarity=0.267 Sum_probs=23.5
Q ss_pred CccEEEEEeCCCCcHHHHHHHHHhHHh
Q 035585 46 NVNIVGVYGMGGIGKTTLVKEFARQAS 72 (183)
Q Consensus 46 ~~~~v~i~G~~G~GKTtL~~~~~~~~~ 72 (183)
+...++|.|++|+|||||++.+...+.
T Consensus 30 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~~ 56 (274)
T PRK13647 30 EGSKTALLGPNGAGKSTLLLHLNGIYL 56 (274)
T ss_pred CCCEEEEECCCCCcHHHHHHHHhcCCC
Confidence 457999999999999999999986553
No 300
>PRK09536 btuD corrinoid ABC transporter ATPase; Reviewed
Probab=98.06 E-value=3.8e-05 Score=62.26 Aligned_cols=49 Identities=12% Similarity=0.078 Sum_probs=32.6
Q ss_pred cCCeEEEEEeCCCCccccc------ccCcCCCCCCCCcEEEEEecChHHHhhcCCCC
Q 035585 124 KEKMILVILDNIWKYLDLE------TVGIPFGDDHRGCKLLLTARDCNVLLNMSLCR 174 (183)
Q Consensus 124 ~~~~~llvlD~~~~~~~~~------~l~~~~~~~~~~~~iiitsr~~~~~~~~~~~~ 174 (183)
.+++-+|++||.....+.. .++..+. ..+..||++||+.+.+..+....
T Consensus 155 ~~~P~iLLLDEPtsgLD~~~~~~l~~lL~~l~--~~g~TIIivsHdl~~~~~~adri 209 (402)
T PRK09536 155 AQATPVLLLDEPTASLDINHQVRTLELVRRLV--DDGKTAVAAIHDLDLAARYCDEL 209 (402)
T ss_pred HcCCCEEEEECCcccCCHHHHHHHHHHHHHHH--hcCCEEEEEECCHHHHHHhCCEE
Confidence 3788999999987654322 2222222 23667999999999987655543
No 301
>PRK11153 metN DL-methionine transporter ATP-binding subunit; Provisional
Probab=98.06 E-value=8e-06 Score=64.97 Aligned_cols=27 Identities=33% Similarity=0.496 Sum_probs=23.2
Q ss_pred CccEEEEEeCCCCcHHHHHHHHHhHHh
Q 035585 46 NVNIVGVYGMGGIGKTTLVKEFARQAS 72 (183)
Q Consensus 46 ~~~~v~i~G~~G~GKTtL~~~~~~~~~ 72 (183)
+..+++|.|++|+|||||++.+...+.
T Consensus 30 ~Gei~~iiG~nGsGKSTLlk~L~Gl~~ 56 (343)
T PRK11153 30 AGEIFGVIGASGAGKSTLIRCINLLER 56 (343)
T ss_pred CCCEEEEECCCCCcHHHHHHHHhCCCC
Confidence 457899999999999999999986553
No 302
>PRK09354 recA recombinase A; Provisional
Probab=98.06 E-value=3.3e-05 Score=61.20 Aligned_cols=89 Identities=17% Similarity=0.205 Sum_probs=54.2
Q ss_pred CccEEEEEeCCCCcHHHHHHHHHhHHhhhhcccceEEEEecCCcCHHHHHHHH---HHHhCCCchhHHHHHHHHHHHHHH
Q 035585 46 NVNIVGVYGMGGIGKTTLVKEFARQASEEKLFDQVVFSEVSQTPDIKKIHGEI---AEKLGLEFSEEAESRRASRLYERL 122 (183)
Q Consensus 46 ~~~~v~i~G~~G~GKTtL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i---~~~l~~~~~~~~~~~~~~~~~~~~ 122 (183)
+.+++.|+|++|+|||||+.+++...... -..++|++.....+.. .+..+ ++.+....+. ........+...+
T Consensus 59 ~G~IteI~G~~GsGKTtLal~~~~~~~~~--G~~~~yId~E~s~~~~-~a~~lGvdld~lli~qp~-~~Eq~l~i~~~li 134 (349)
T PRK09354 59 RGRIVEIYGPESSGKTTLALHAIAEAQKA--GGTAAFIDAEHALDPV-YAKKLGVDIDNLLVSQPD-TGEQALEIADTLV 134 (349)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHc--CCcEEEECCccchHHH-HHHHcCCCHHHeEEecCC-CHHHHHHHHHHHh
Confidence 45689999999999999999988776543 4568888887655432 22222 1222221221 1222233333344
Q ss_pred hcCCeEEEEEeCCCCc
Q 035585 123 KKEKMILVILDNIWKY 138 (183)
Q Consensus 123 ~~~~~~llvlD~~~~~ 138 (183)
++...-+||+|.+..+
T Consensus 135 ~s~~~~lIVIDSvaaL 150 (349)
T PRK09354 135 RSGAVDLIVVDSVAAL 150 (349)
T ss_pred hcCCCCEEEEeChhhh
Confidence 5567889999987643
No 303
>PRK13657 cyclic beta-1,2-glucan ABC transporter; Provisional
Probab=98.06 E-value=1.8e-05 Score=67.29 Aligned_cols=28 Identities=29% Similarity=0.371 Sum_probs=23.9
Q ss_pred CCccEEEEEeCCCCcHHHHHHHHHhHHh
Q 035585 45 VNVNIVGVYGMGGIGKTTLVKEFARQAS 72 (183)
Q Consensus 45 ~~~~~v~i~G~~G~GKTtL~~~~~~~~~ 72 (183)
.+...++|+|++|+|||||++.+...+.
T Consensus 359 ~~G~~v~IvG~sGsGKSTLl~lL~gl~~ 386 (588)
T PRK13657 359 KPGQTVAIVGPTGAGKSTLINLLQRVFD 386 (588)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhcCcC
Confidence 3457899999999999999999986654
No 304
>KOG0738 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=98.06 E-value=9e-06 Score=64.47 Aligned_cols=72 Identities=22% Similarity=0.221 Sum_probs=46.3
Q ss_pred ccEEEEEeCCCCcHHHHHHHHHhHHhhhhcccceEEEEecCCcCHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHHhcCC
Q 035585 47 VNIVGVYGMGGIGKTTLVKEFARQASEEKLFDQVVFSEVSQTPDIKKIHGEIAEKLGLEFSEEAESRRASRLYERLKKEK 126 (183)
Q Consensus 47 ~~~v~i~G~~G~GKTtL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 126 (183)
=+-|+++||+|+|||.||++++.+-.. -|+|+++..-.. .+.+ ..+..++.+++..+..-
T Consensus 245 WkgvLm~GPPGTGKTlLAKAvATEc~t-------TFFNVSsstltS------------KwRG-eSEKlvRlLFemARfyA 304 (491)
T KOG0738|consen 245 WKGVLMVGPPGTGKTLLAKAVATECGT-------TFFNVSSSTLTS------------KWRG-ESEKLVRLLFEMARFYA 304 (491)
T ss_pred cceeeeeCCCCCcHHHHHHHHHHhhcC-------eEEEechhhhhh------------hhcc-chHHHHHHHHHHHHHhC
Confidence 346999999999999999999986443 355665532111 1111 12334455666666567
Q ss_pred eEEEEEeCCCCc
Q 035585 127 MILVILDNIWKY 138 (183)
Q Consensus 127 ~~llvlD~~~~~ 138 (183)
+..|+|||+|.+
T Consensus 305 PStIFiDEIDsl 316 (491)
T KOG0738|consen 305 PSTIFIDEIDSL 316 (491)
T ss_pred CceeehhhHHHH
Confidence 888888888755
No 305
>PRK14275 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.06 E-value=3.4e-05 Score=59.89 Aligned_cols=25 Identities=24% Similarity=0.515 Sum_probs=22.3
Q ss_pred CccEEEEEeCCCCcHHHHHHHHHhH
Q 035585 46 NVNIVGVYGMGGIGKTTLVKEFARQ 70 (183)
Q Consensus 46 ~~~~v~i~G~~G~GKTtL~~~~~~~ 70 (183)
+..+++|+|++|+|||||++.+...
T Consensus 64 ~Ge~~~l~G~nGsGKSTLl~~L~Gl 88 (286)
T PRK14275 64 SKYVTAIIGPSGCGKSTFLRAINRM 88 (286)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcc
Confidence 4478999999999999999999874
No 306
>KOG0730 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=98.06 E-value=2.5e-05 Score=65.57 Aligned_cols=74 Identities=23% Similarity=0.354 Sum_probs=50.4
Q ss_pred CCccEEEEEeCCCCcHHHHHHHHHhHHhhhhcccceEEEEecCCcCHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHHhc
Q 035585 45 VNVNIVGVYGMGGIGKTTLVKEFARQASEEKLFDQVVFSEVSQTPDIKKIHGEIAEKLGLEFSEEAESRRASRLYERLKK 124 (183)
Q Consensus 45 ~~~~~v~i~G~~G~GKTtL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~ 124 (183)
.+++-|+++||||+|||++|+.+++.-... |+.+.. .+++.... + ..+..+..++.+.++
T Consensus 466 ~ppkGVLlyGPPGC~KT~lAkalAne~~~n-------Flsvkg----pEL~sk~v---G------eSEr~ir~iF~kAR~ 525 (693)
T KOG0730|consen 466 SPPKGVLLYGPPGCGKTLLAKALANEAGMN-------FLSVKG----PELFSKYV---G------ESERAIREVFRKARQ 525 (693)
T ss_pred CCCceEEEECCCCcchHHHHHHHhhhhcCC-------eeeccC----HHHHHHhc---C------chHHHHHHHHHHHhh
Confidence 577889999999999999999999876544 222222 12222221 1 133455677777777
Q ss_pred CCeEEEEEeCCCCc
Q 035585 125 EKMILVILDNIWKY 138 (183)
Q Consensus 125 ~~~~llvlD~~~~~ 138 (183)
-.+-++.|||+|..
T Consensus 526 ~aP~IiFfDEiDsi 539 (693)
T KOG0730|consen 526 VAPCIIFFDEIDAL 539 (693)
T ss_pred cCCeEEehhhHHhH
Confidence 77899999999854
No 307
>PRK13546 teichoic acids export protein ATP-binding subunit; Provisional
Probab=98.06 E-value=1.4e-05 Score=61.37 Aligned_cols=28 Identities=29% Similarity=0.521 Sum_probs=24.3
Q ss_pred CccEEEEEeCCCCcHHHHHHHHHhHHhh
Q 035585 46 NVNIVGVYGMGGIGKTTLVKEFARQASE 73 (183)
Q Consensus 46 ~~~~v~i~G~~G~GKTtL~~~~~~~~~~ 73 (183)
+...++|.|++|+|||||++.++..+..
T Consensus 49 ~Ge~~~liG~NGsGKSTLlk~L~Gl~~p 76 (264)
T PRK13546 49 EGDVIGLVGINGSGKSTLSNIIGGSLSP 76 (264)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCcCC
Confidence 4568999999999999999999987653
No 308
>PRK13541 cytochrome c biogenesis protein CcmA; Provisional
Probab=98.06 E-value=8.6e-06 Score=59.57 Aligned_cols=27 Identities=26% Similarity=0.370 Sum_probs=23.6
Q ss_pred CccEEEEEeCCCCcHHHHHHHHHhHHh
Q 035585 46 NVNIVGVYGMGGIGKTTLVKEFARQAS 72 (183)
Q Consensus 46 ~~~~v~i~G~~G~GKTtL~~~~~~~~~ 72 (183)
+...++|.|++|+|||||++.++....
T Consensus 25 ~Ge~~~l~G~nGsGKSTLl~~l~G~~~ 51 (195)
T PRK13541 25 PSAITYIKGANGCGKSSLLRMIAGIMQ 51 (195)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhcCCC
Confidence 457899999999999999999987654
No 309
>PRK14248 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.06 E-value=2.2e-05 Score=60.23 Aligned_cols=26 Identities=23% Similarity=0.487 Sum_probs=22.7
Q ss_pred CccEEEEEeCCCCcHHHHHHHHHhHH
Q 035585 46 NVNIVGVYGMGGIGKTTLVKEFARQA 71 (183)
Q Consensus 46 ~~~~v~i~G~~G~GKTtL~~~~~~~~ 71 (183)
+...++|.|++|+|||||++.+....
T Consensus 46 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 71 (268)
T PRK14248 46 KHAVTALIGPSGCGKSTFLRSINRMN 71 (268)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhcc
Confidence 45789999999999999999998743
No 310
>PRK11176 lipid transporter ATP-binding/permease protein; Provisional
Probab=98.06 E-value=8.9e-06 Score=69.05 Aligned_cols=28 Identities=25% Similarity=0.315 Sum_probs=24.0
Q ss_pred CccEEEEEeCCCCcHHHHHHHHHhHHhh
Q 035585 46 NVNIVGVYGMGGIGKTTLVKEFARQASE 73 (183)
Q Consensus 46 ~~~~v~i~G~~G~GKTtL~~~~~~~~~~ 73 (183)
+...++|+|++|+|||||++.+...+..
T Consensus 368 ~G~~~aIvG~sGsGKSTLl~ll~gl~~p 395 (582)
T PRK11176 368 AGKTVALVGRSGSGKSTIANLLTRFYDI 395 (582)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhccCC
Confidence 4578999999999999999999876543
No 311
>TIGR03375 type_I_sec_LssB type I secretion system ATPase, LssB family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export.
Probab=98.06 E-value=1.3e-05 Score=69.46 Aligned_cols=28 Identities=29% Similarity=0.243 Sum_probs=23.8
Q ss_pred CCccEEEEEeCCCCcHHHHHHHHHhHHh
Q 035585 45 VNVNIVGVYGMGGIGKTTLVKEFARQAS 72 (183)
Q Consensus 45 ~~~~~v~i~G~~G~GKTtL~~~~~~~~~ 72 (183)
.+...++|+|++|+|||||++.+...+.
T Consensus 489 ~~G~~iaIvG~sGsGKSTLlklL~gl~~ 516 (694)
T TIGR03375 489 RPGEKVAIIGRIGSGKSTLLKLLLGLYQ 516 (694)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence 3457899999999999999999986654
No 312
>PRK05707 DNA polymerase III subunit delta'; Validated
Probab=98.05 E-value=4.4e-05 Score=60.32 Aligned_cols=114 Identities=14% Similarity=0.085 Sum_probs=61.0
Q ss_pred CccEEEEEeCCCCcHHHHHHHHHhHHhhhhccc--c------eEEEEecCCcCHHHHHHHHHHHhCCCchhHHHHHHHHH
Q 035585 46 NVNIVGVYGMGGIGKTTLVKEFARQASEEKLFD--Q------VVFSEVSQTPDIKKIHGEIAEKLGLEFSEEAESRRASR 117 (183)
Q Consensus 46 ~~~~v~i~G~~G~GKTtL~~~~~~~~~~~~~~~--~------~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~ 117 (183)
-++.++++|+.|+|||++|+.++..+-...... . +.++...+.++...+. ..........+.++.
T Consensus 21 ~~ha~Lf~G~~G~GK~~~A~~~A~~llC~~~~~~~~Cg~C~sC~~~~~g~HPD~~~i~-------~~~~~~~i~id~iR~ 93 (328)
T PRK05707 21 HPHAYLLHGPAGIGKRALAERLAAALLCEAPQGGGACGSCKGCQLLRAGSHPDNFVLE-------PEEADKTIKVDQVRE 93 (328)
T ss_pred cceeeeeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHhcCCCCCEEEEe-------ccCCCCCCCHHHHHH
Confidence 356789999999999999999998775321100 0 0000000001100000 000000001122233
Q ss_pred HHHHHh----cCCeEEEEEeCCCCcc--cccccCcCCCCCCCCcEEEEEecChHH
Q 035585 118 LYERLK----KEKMILVILDNIWKYL--DLETVGIPFGDDHRGCKLLLTARDCNV 166 (183)
Q Consensus 118 ~~~~~~----~~~~~llvlD~~~~~~--~~~~l~~~~~~~~~~~~iiitsr~~~~ 166 (183)
+.+.+. ..+..++|||+++.+. ..+.++..+.....++.+|++|++.+.
T Consensus 94 l~~~~~~~~~~~~~kv~iI~~a~~m~~~aaNaLLK~LEEPp~~~~fiL~t~~~~~ 148 (328)
T PRK05707 94 LVSFVVQTAQLGGRKVVLIEPAEAMNRNAANALLKSLEEPSGDTVLLLISHQPSR 148 (328)
T ss_pred HHHHHhhccccCCCeEEEECChhhCCHHHHHHHHHHHhCCCCCeEEEEEECChhh
Confidence 333322 2556677889999774 566676766666677888888887653
No 313
>PRK14250 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.05 E-value=1.6e-05 Score=60.03 Aligned_cols=27 Identities=33% Similarity=0.443 Sum_probs=23.3
Q ss_pred CccEEEEEeCCCCcHHHHHHHHHhHHh
Q 035585 46 NVNIVGVYGMGGIGKTTLVKEFARQAS 72 (183)
Q Consensus 46 ~~~~v~i~G~~G~GKTtL~~~~~~~~~ 72 (183)
+...++|.|++|+|||||++.++....
T Consensus 28 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~~ 54 (241)
T PRK14250 28 GGAIYTIVGPSGAGKSTLIKLINRLID 54 (241)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 457899999999999999999987553
No 314
>PRK00149 dnaA chromosomal replication initiation protein; Reviewed
Probab=98.05 E-value=2.2e-05 Score=64.71 Aligned_cols=76 Identities=20% Similarity=0.318 Sum_probs=46.7
Q ss_pred ccEEEEEeCCCCcHHHHHHHHHhHHhhhhcccceEEEEecCCcCHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHHhcCC
Q 035585 47 VNIVGVYGMGGIGKTTLVKEFARQASEEKLFDQVVFSEVSQTPDIKKIHGEIAEKLGLEFSEEAESRRASRLYERLKKEK 126 (183)
Q Consensus 47 ~~~v~i~G~~G~GKTtL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 126 (183)
...+.|+|++|+|||+|++.+.+.+........++|+++.. +...+...+... ....+...+. .
T Consensus 148 ~~~l~l~G~~G~GKThL~~ai~~~~~~~~~~~~v~yi~~~~------~~~~~~~~~~~~--------~~~~~~~~~~--~ 211 (450)
T PRK00149 148 YNPLFIYGGVGLGKTHLLHAIGNYILEKNPNAKVVYVTSEK------FTNDFVNALRNN--------TMEEFKEKYR--S 211 (450)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEEEHHH------HHHHHHHHHHcC--------cHHHHHHHHh--c
Confidence 35689999999999999999999987652223456655432 223333332211 1123333333 4
Q ss_pred eEEEEEeCCCCc
Q 035585 127 MILVILDNIWKY 138 (183)
Q Consensus 127 ~~llvlD~~~~~ 138 (183)
.-+|+|||++..
T Consensus 212 ~dlLiiDDi~~l 223 (450)
T PRK00149 212 VDVLLIDDIQFL 223 (450)
T ss_pred CCEEEEehhhhh
Confidence 558999999854
No 315
>PF13481 AAA_25: AAA domain; PDB: 1G8Y_J 1OLO_A 1NLF_C.
Probab=98.05 E-value=2.3e-05 Score=57.01 Aligned_cols=43 Identities=21% Similarity=0.315 Sum_probs=30.9
Q ss_pred ccEEEEEeCCCCcHHHHHHHHHhHHhhhh-c-------ccceEEEEecCCc
Q 035585 47 VNIVGVYGMGGIGKTTLVKEFARQASEEK-L-------FDQVVFSEVSQTP 89 (183)
Q Consensus 47 ~~~v~i~G~~G~GKTtL~~~~~~~~~~~~-~-------~~~~~~~~~~~~~ 89 (183)
..++.|.|++|+|||+++..++..+.... + -..++|++.....
T Consensus 32 g~l~~i~g~~g~GKT~~~~~l~~~~~~g~~~~g~~~~~~~~Vl~i~~E~~~ 82 (193)
T PF13481_consen 32 GELTLIAGPPGSGKTTLALQLAAALATGRPFLGELPPRPGRVLYISLEDSE 82 (193)
T ss_dssp TSEEEEEECSTSSHHHHHHHHHHHHHT---TT---------EEEEESSS-H
T ss_pred CeEEEEEeCCCCCHHHHHHHHHHHHHhCCccCCcccccCceEEEEeccCCH
Confidence 46899999999999999999998876521 1 2358888877663
No 316
>PRK14237 phosphate transporter ATP-binding protein; Provisional
Probab=98.05 E-value=2.6e-05 Score=59.91 Aligned_cols=27 Identities=26% Similarity=0.476 Sum_probs=23.7
Q ss_pred CccEEEEEeCCCCcHHHHHHHHHhHHh
Q 035585 46 NVNIVGVYGMGGIGKTTLVKEFARQAS 72 (183)
Q Consensus 46 ~~~~v~i~G~~G~GKTtL~~~~~~~~~ 72 (183)
+...++|.|++|+|||||++.++..+.
T Consensus 45 ~Ge~~~I~G~nGsGKSTLl~~l~Gl~~ 71 (267)
T PRK14237 45 KNKITALIGPSGSGKSTYLRSLNRMND 71 (267)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhccC
Confidence 457899999999999999999987653
No 317
>TIGR02314 ABC_MetN D-methionine ABC transporter, ATP-binding protein. Members of this family are the ATP-binding protein of the D-methionine ABC transporter complex. Known members belong to the Proteobacteria.
Probab=98.05 E-value=8.1e-06 Score=64.86 Aligned_cols=50 Identities=16% Similarity=0.242 Sum_probs=32.4
Q ss_pred CCeEEEEEeCCCCccccc---ccCcCCCC--CCCCcEEEEEecChHHHhhcCCCC
Q 035585 125 EKMILVILDNIWKYLDLE---TVGIPFGD--DHRGCKLLLTARDCNVLLNMSLCR 174 (183)
Q Consensus 125 ~~~~llvlD~~~~~~~~~---~l~~~~~~--~~~~~~iiitsr~~~~~~~~~~~~ 174 (183)
.++-+|++||+....+.. .+...+.. ...|..||++||+.+++..+....
T Consensus 157 ~~P~iLLlDEPts~LD~~t~~~i~~lL~~l~~~~g~tiiliTH~~~~v~~~~d~v 211 (343)
T TIGR02314 157 SNPKVLLCDEATSALDPATTQSILELLKEINRRLGLTILLITHEMDVVKRICDCV 211 (343)
T ss_pred hCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEE
Confidence 778899999987654321 12222222 123678999999999987765544
No 318
>cd03267 ABC_NatA_like Similar in sequence to NatA, this is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single intergral membrane protein.
Probab=98.05 E-value=4.4e-05 Score=57.55 Aligned_cols=27 Identities=37% Similarity=0.464 Sum_probs=23.4
Q ss_pred CccEEEEEeCCCCcHHHHHHHHHhHHh
Q 035585 46 NVNIVGVYGMGGIGKTTLVKEFARQAS 72 (183)
Q Consensus 46 ~~~~v~i~G~~G~GKTtL~~~~~~~~~ 72 (183)
+...++|.|++|+|||||++.++..+.
T Consensus 46 ~Ge~~~i~G~NGsGKSTLl~~i~Gl~~ 72 (236)
T cd03267 46 KGEIVGFIGPNGAGKTTTLKILSGLLQ 72 (236)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCcC
Confidence 457899999999999999999987653
No 319
>cd01394 radB RadB. The archaeal protein radB shares similarity radA, the archaeal functional homologue to the bacterial RecA. The precise function of radB is unclear.
Probab=98.05 E-value=5.3e-05 Score=56.27 Aligned_cols=41 Identities=22% Similarity=0.372 Sum_probs=32.0
Q ss_pred CccEEEEEeCCCCcHHHHHHHHHhHHhhhhcccceEEEEecCC
Q 035585 46 NVNIVGVYGMGGIGKTTLVKEFARQASEEKLFDQVVFSEVSQT 88 (183)
Q Consensus 46 ~~~~v~i~G~~G~GKTtL~~~~~~~~~~~~~~~~~~~~~~~~~ 88 (183)
...++.|+|++|+|||+|+.+++...... -..++|++....
T Consensus 18 ~g~i~~i~G~~GsGKT~l~~~~a~~~~~~--g~~v~yi~~e~~ 58 (218)
T cd01394 18 RGTVTQVYGPPGTGKTNIAIQLAVETAGQ--GKKVAYIDTEGL 58 (218)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhc--CCeEEEEECCCC
Confidence 45789999999999999999998877543 345778766543
No 320
>PRK10771 thiQ thiamine transporter ATP-binding subunit; Provisional
Probab=98.05 E-value=1.4e-05 Score=60.03 Aligned_cols=27 Identities=30% Similarity=0.379 Sum_probs=23.3
Q ss_pred CccEEEEEeCCCCcHHHHHHHHHhHHh
Q 035585 46 NVNIVGVYGMGGIGKTTLVKEFARQAS 72 (183)
Q Consensus 46 ~~~~v~i~G~~G~GKTtL~~~~~~~~~ 72 (183)
+...++|+|++|+|||||++.+.....
T Consensus 24 ~Ge~~~l~G~nGsGKSTLl~~l~Gl~~ 50 (232)
T PRK10771 24 RGERVAILGPSGAGKSTLLNLIAGFLT 50 (232)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 457899999999999999999986543
No 321
>cd03252 ABCC_Hemolysin The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E. coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy.
Probab=98.05 E-value=5.4e-05 Score=56.99 Aligned_cols=27 Identities=37% Similarity=0.484 Sum_probs=23.4
Q ss_pred CCccEEEEEeCCCCcHHHHHHHHHhHH
Q 035585 45 VNVNIVGVYGMGGIGKTTLVKEFARQA 71 (183)
Q Consensus 45 ~~~~~v~i~G~~G~GKTtL~~~~~~~~ 71 (183)
.+...++|.|++|+|||||++.+...+
T Consensus 26 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 52 (237)
T cd03252 26 KPGEVVGIVGRSGSGKSTLTKLIQRFY 52 (237)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcCc
Confidence 345789999999999999999998655
No 322
>PF05970 PIF1: PIF1-like helicase; InterPro: IPR010285 This entry represents PIF1 helicase and related proteins. The PIF1 helicase inhibits telomerase activity and is cell cycle regulated [, ].
Probab=98.05 E-value=8.9e-06 Score=65.22 Aligned_cols=99 Identities=23% Similarity=0.294 Sum_probs=58.9
Q ss_pred HHHHHHHHHhccCCccEEEEEeCCCCcHHHHHHHHHhHHhhhhcccceEEEEecCCcCHHHH--HHHHHHHhCCCchhHH
Q 035585 33 STLKSIQDALTDVNVNIVGVYGMGGIGKTTLVKEFARQASEEKLFDQVVFSEVSQTPDIKKI--HGEIAEKLGLEFSEEA 110 (183)
Q Consensus 33 ~~l~~l~~~l~~~~~~~v~i~G~~G~GKTtL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~i~~~l~~~~~~~~ 110 (183)
..++.+.+.+....+..+.|.|++|+|||+|.+.+...++.. ...+.+.++.+.+...+ -..+++.+..+.....
T Consensus 8 ~~~~~v~~~~~~~~~~~~fv~G~~GtGKs~l~~~i~~~~~~~---~~~~~~~a~tg~AA~~i~~G~T~hs~f~i~~~~~~ 84 (364)
T PF05970_consen 8 RVFDTVIEAIENEEGLNFFVTGPAGTGKSFLIKAIIDYLRSR---GKKVLVTAPTGIAAFNIPGGRTIHSFFGIPINNNE 84 (364)
T ss_pred HHHHHHHHHHHccCCcEEEEEcCCCCChhHHHHHHHHHhccc---cceEEEecchHHHHHhccCCcchHHhcCccccccc
Confidence 344555555556677899999999999999999999887663 22344455554443333 3455555554433321
Q ss_pred HHH----HHHHHHHHHhcCCeEEEEEeCCC
Q 035585 111 ESR----RASRLYERLKKEKMILVILDNIW 136 (183)
Q Consensus 111 ~~~----~~~~~~~~~~~~~~~llvlD~~~ 136 (183)
... ....+...+ ..--+||+||+.
T Consensus 85 ~~~~~~~~~~~~~~~l--~~~~~lIiDEis 112 (364)
T PF05970_consen 85 KSQCKISKNSRLRERL--RKADVLIIDEIS 112 (364)
T ss_pred cccccccccchhhhhh--hhheeeeccccc
Confidence 111 111122222 455699999985
No 323
>PRK13652 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=98.05 E-value=1.2e-05 Score=62.18 Aligned_cols=27 Identities=30% Similarity=0.458 Sum_probs=23.4
Q ss_pred CccEEEEEeCCCCcHHHHHHHHHhHHh
Q 035585 46 NVNIVGVYGMGGIGKTTLVKEFARQAS 72 (183)
Q Consensus 46 ~~~~v~i~G~~G~GKTtL~~~~~~~~~ 72 (183)
+..+++|+|++|+|||||++.+...+.
T Consensus 29 ~Ge~~~i~G~NGsGKSTLl~~l~Gl~~ 55 (277)
T PRK13652 29 RNSRIAVIGPNGAGKSTLFRHFNGILK 55 (277)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence 457899999999999999999986553
No 324
>PRK14268 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.04 E-value=3.7e-05 Score=58.69 Aligned_cols=26 Identities=23% Similarity=0.488 Sum_probs=22.8
Q ss_pred CccEEEEEeCCCCcHHHHHHHHHhHH
Q 035585 46 NVNIVGVYGMGGIGKTTLVKEFARQA 71 (183)
Q Consensus 46 ~~~~v~i~G~~G~GKTtL~~~~~~~~ 71 (183)
+...++|.|++|+|||||++.+....
T Consensus 37 ~Ge~~~i~G~nGsGKSTLl~~i~Gl~ 62 (258)
T PRK14268 37 KNSVTALIGPSGCGKSTFIRCLNRMN 62 (258)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 44689999999999999999998654
No 325
>COG2607 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=98.04 E-value=3.1e-05 Score=57.76 Aligned_cols=49 Identities=20% Similarity=0.295 Sum_probs=37.8
Q ss_pred ccccchHHHHHHHHHH----hccCCccEEEEEeCCCCcHHHHHHHHHhHHhhh
Q 035585 26 EAFKSRLSTLKSIQDA----LTDVNVNIVGVYGMGGIGKTTLVKEFARQASEE 74 (183)
Q Consensus 26 ~~~~gR~~~l~~l~~~----l~~~~~~~v~i~G~~G~GKTtL~~~~~~~~~~~ 74 (183)
..++|-+...+.|... +...+...|++||-.|+|||+|++++.+.+..+
T Consensus 60 ~~l~Gvd~qk~~L~~NT~~F~~G~pANnVLLwGaRGtGKSSLVKA~~~e~~~~ 112 (287)
T COG2607 60 ADLVGVDRQKEALVRNTEQFAEGLPANNVLLWGARGTGKSSLVKALLNEYADE 112 (287)
T ss_pred HHHhCchHHHHHHHHHHHHHHcCCcccceEEecCCCCChHHHHHHHHHHHHhc
Confidence 3456666666556543 335667789999999999999999999998876
No 326
>PRK05541 adenylylsulfate kinase; Provisional
Probab=98.04 E-value=4.9e-05 Score=54.57 Aligned_cols=37 Identities=24% Similarity=0.461 Sum_probs=29.1
Q ss_pred CCccEEEEEeCCCCcHHHHHHHHHhHHhhhhcccceEEE
Q 035585 45 VNVNIVGVYGMGGIGKTTLVKEFARQASEEKLFDQVVFS 83 (183)
Q Consensus 45 ~~~~~v~i~G~~G~GKTtL~~~~~~~~~~~~~~~~~~~~ 83 (183)
.++.++.+.|++|+||||+++.+...+... +..+.++
T Consensus 5 ~~~~~I~i~G~~GsGKst~a~~l~~~l~~~--~~~~~~~ 41 (176)
T PRK05541 5 PNGYVIWITGLAGSGKTTIAKALYERLKLK--YSNVIYL 41 (176)
T ss_pred CCCCEEEEEcCCCCCHHHHHHHHHHHHHHc--CCcEEEE
Confidence 345689999999999999999999988754 3344444
No 327
>KOG0731 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=98.04 E-value=1.6e-05 Score=68.14 Aligned_cols=96 Identities=22% Similarity=0.176 Sum_probs=62.7
Q ss_pred CCcccccchHHHHHHHHHHhcc---------CCccEEEEEeCCCCcHHHHHHHHHhHHhhhhcccceEEEEecCCcCHHH
Q 035585 23 KGYEAFKSRLSTLKSIQDALTD---------VNVNIVGVYGMGGIGKTTLVKEFARQASEEKLFDQVVFSEVSQTPDIKK 93 (183)
Q Consensus 23 ~~~~~~~gR~~~l~~l~~~l~~---------~~~~~v~i~G~~G~GKTtL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 93 (183)
.+..+...-.+|+..+.++|.+ .-++-++|+||+|+|||.||++++.+-.. -|+.++...-.
T Consensus 311 kDVAG~deAK~El~E~V~fLKNP~~Y~~lGAKiPkGvLL~GPPGTGKTLLAKAiAGEAgV-------PF~svSGSEFv-- 381 (774)
T KOG0731|consen 311 KDVAGVDEAKEELMEFVKFLKNPEQYQELGAKIPKGVLLVGPPGTGKTLLAKAIAGEAGV-------PFFSVSGSEFV-- 381 (774)
T ss_pred ccccCcHHHHHHHHHHHHHhcCHHHHHHcCCcCcCceEEECCCCCcHHHHHHHHhcccCC-------ceeeechHHHH--
Confidence 4455555566777777777764 24466999999999999999999986443 34445443111
Q ss_pred HHHHHHHHhCCCchhHHHHHHHHHHHHHHhcCCeEEEEEeCCCCc
Q 035585 94 IHGEIAEKLGLEFSEEAESRRASRLYERLKKEKMILVILDNIWKY 138 (183)
Q Consensus 94 ~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~llvlD~~~~~ 138 (183)
.. +... ....++.++...+..-+.++.+|++|..
T Consensus 382 --E~----~~g~-----~asrvr~lf~~ar~~aP~iifideida~ 415 (774)
T KOG0731|consen 382 --EM----FVGV-----GASRVRDLFPLARKNAPSIIFIDEIDAV 415 (774)
T ss_pred --HH----hccc-----chHHHHHHHHHhhccCCeEEEecccccc
Confidence 11 1111 1233466777777788999999998743
No 328
>PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional
Probab=98.04 E-value=1.9e-05 Score=65.94 Aligned_cols=51 Identities=18% Similarity=0.196 Sum_probs=32.5
Q ss_pred CCeEEEEEeCCCCccccccc---CcCCCC-CCCCcEEEEEecChHHHhhcCCCCc
Q 035585 125 EKMILVILDNIWKYLDLETV---GIPFGD-DHRGCKLLLTARDCNVLLNMSLCRS 175 (183)
Q Consensus 125 ~~~~llvlD~~~~~~~~~~l---~~~~~~-~~~~~~iiitsr~~~~~~~~~~~~~ 175 (183)
.++-+|++||.....+.... ...+.. ...|..||++|||.+.+..+.....
T Consensus 413 ~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tviivsHd~~~~~~~~d~i~ 467 (501)
T PRK11288 413 EDMKVILLDEPTRGIDVGAKHEIYNVIYELAAQGVAVLFVSSDLPEVLGVADRIV 467 (501)
T ss_pred cCCCEEEEcCCCCCCCHhHHHHHHHHHHHHHhCCCEEEEECCCHHHHHhhCCEEE
Confidence 67889999998766442222 111111 1236679999999998876655433
No 329
>PRK13634 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=98.04 E-value=1.7e-05 Score=61.65 Aligned_cols=27 Identities=26% Similarity=0.405 Sum_probs=23.3
Q ss_pred CccEEEEEeCCCCcHHHHHHHHHhHHh
Q 035585 46 NVNIVGVYGMGGIGKTTLVKEFARQAS 72 (183)
Q Consensus 46 ~~~~v~i~G~~G~GKTtL~~~~~~~~~ 72 (183)
+..+++|.|++|+|||||++.+...+.
T Consensus 32 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~~ 58 (290)
T PRK13634 32 SGSYVAIIGHTGSGKSTLLQHLNGLLQ 58 (290)
T ss_pred CCCEEEEECCCCCcHHHHHHHHhcCCC
Confidence 447899999999999999999986543
No 330
>PRK13536 nodulation factor exporter subunit NodI; Provisional
Probab=98.04 E-value=1.4e-05 Score=63.50 Aligned_cols=27 Identities=26% Similarity=0.425 Sum_probs=23.6
Q ss_pred CccEEEEEeCCCCcHHHHHHHHHhHHh
Q 035585 46 NVNIVGVYGMGGIGKTTLVKEFARQAS 72 (183)
Q Consensus 46 ~~~~v~i~G~~G~GKTtL~~~~~~~~~ 72 (183)
...+++|.|++|+|||||++.+...+.
T Consensus 66 ~Gei~gLlGpNGaGKSTLl~~L~Gl~~ 92 (340)
T PRK13536 66 SGECFGLLGPNGAGKSTIARMILGMTS 92 (340)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHcCCC
Confidence 457899999999999999999987654
No 331
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=98.04 E-value=3.7e-05 Score=55.07 Aligned_cols=37 Identities=22% Similarity=0.365 Sum_probs=28.4
Q ss_pred EEEEEeCCCCcHHHHHHHHHhHHhhhhcccceEEEEecC
Q 035585 49 IVGVYGMGGIGKTTLVKEFARQASEEKLFDQVVFSEVSQ 87 (183)
Q Consensus 49 ~v~i~G~~G~GKTtL~~~~~~~~~~~~~~~~~~~~~~~~ 87 (183)
++.++|++|+||||++..++..+... -..+.++++..
T Consensus 2 ~~~~~G~~G~GKTt~~~~la~~~~~~--g~~v~~i~~D~ 38 (173)
T cd03115 2 VILLVGLQGVGKTTTAAKLALYLKKK--GKKVLLVAADT 38 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHC--CCcEEEEEcCC
Confidence 57889999999999999999887764 23455666553
No 332
>PRK15112 antimicrobial peptide ABC system ATP-binding protein SapF; Provisional
Probab=98.04 E-value=1.6e-05 Score=61.08 Aligned_cols=27 Identities=30% Similarity=0.410 Sum_probs=23.6
Q ss_pred CccEEEEEeCCCCcHHHHHHHHHhHHh
Q 035585 46 NVNIVGVYGMGGIGKTTLVKEFARQAS 72 (183)
Q Consensus 46 ~~~~v~i~G~~G~GKTtL~~~~~~~~~ 72 (183)
+...++|+|++|+|||||++.+...+.
T Consensus 38 ~Ge~~~i~G~NGsGKSTLl~~l~Gl~~ 64 (267)
T PRK15112 38 EGQTLAIIGENGSGKSTLAKMLAGMIE 64 (267)
T ss_pred CCCEEEEEcCCCCCHHHHHHHHhCCCC
Confidence 457899999999999999999987654
No 333
>PRK14274 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.03 E-value=3.1e-05 Score=59.11 Aligned_cols=26 Identities=23% Similarity=0.455 Sum_probs=23.0
Q ss_pred CccEEEEEeCCCCcHHHHHHHHHhHH
Q 035585 46 NVNIVGVYGMGGIGKTTLVKEFARQA 71 (183)
Q Consensus 46 ~~~~v~i~G~~G~GKTtL~~~~~~~~ 71 (183)
+...++|.|++|+|||||++.+....
T Consensus 37 ~Ge~~~l~G~nGsGKSTLl~~l~G~~ 62 (259)
T PRK14274 37 ENEVTAIIGPSGCGKSTFIKTLNLMI 62 (259)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhc
Confidence 45689999999999999999998755
No 334
>PLN03073 ABC transporter F family; Provisional
Probab=98.03 E-value=2.3e-05 Score=67.94 Aligned_cols=126 Identities=14% Similarity=0.169 Sum_probs=66.3
Q ss_pred CccEEEEEeCCCCcHHHHHHHHHhHHhhhh---ccc---ceEEEEecC--CcCH----------------HHHHHHHHHH
Q 035585 46 NVNIVGVYGMGGIGKTTLVKEFARQASEEK---LFD---QVVFSEVSQ--TPDI----------------KKIHGEIAEK 101 (183)
Q Consensus 46 ~~~~v~i~G~~G~GKTtL~~~~~~~~~~~~---~~~---~~~~~~~~~--~~~~----------------~~~~~~i~~~ 101 (183)
+...++|+|++|+|||||++.+...+.... .+. .+.|+.-.. .... ..-...++..
T Consensus 534 ~Ge~i~LvG~NGsGKSTLLk~L~Gll~p~~G~I~~~~~~~igyv~Q~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~L~~ 613 (718)
T PLN03073 534 LDSRIAMVGPNGIGKSTILKLISGELQPSSGTVFRSAKVRMAVFSQHHVDGLDLSSNPLLYMMRCFPGVPEQKLRAHLGS 613 (718)
T ss_pred CCCEEEEECCCCCcHHHHHHHHhCCCCCCCceEEECCceeEEEEeccccccCCcchhHHHHHHHhcCCCCHHHHHHHHHH
Confidence 345899999999999999999997664321 000 122211000 0000 0111223333
Q ss_pred hCCCc-------hhHHHHHHHHHHHHHHhcCCeEEEEEeCCCCccccc---ccCcCCCCCCCCcEEEEEecChHHHhhcC
Q 035585 102 LGLEF-------SEEAESRRASRLYERLKKEKMILVILDNIWKYLDLE---TVGIPFGDDHRGCKLLLTARDCNVLLNMS 171 (183)
Q Consensus 102 l~~~~-------~~~~~~~~~~~~~~~~~~~~~~llvlD~~~~~~~~~---~l~~~~~~~~~~~~iiitsr~~~~~~~~~ 171 (183)
++... ...+..+.....+......++-+|++||..+..+.. .+...+... .+ .||++||+..++..+.
T Consensus 614 ~gl~~~~~~~~~~~LSgGqkqRvaLAraL~~~p~lLLLDEPT~~LD~~s~~~l~~~L~~~-~g-tvIivSHd~~~i~~~~ 691 (718)
T PLN03073 614 FGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHILLLDEPSNHLDLDAVEALIQGLVLF-QG-GVLMVSHDEHLISGSV 691 (718)
T ss_pred CCCChHHhcCCccccCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHHc-CC-EEEEEECCHHHHHHhC
Confidence 33321 001222222222333333789999999998665422 222222222 35 6999999999988765
Q ss_pred CC
Q 035585 172 LC 173 (183)
Q Consensus 172 ~~ 173 (183)
..
T Consensus 692 dr 693 (718)
T PLN03073 692 DE 693 (718)
T ss_pred CE
Confidence 54
No 335
>TIGR00972 3a0107s01c2 phosphate ABC transporter, ATP-binding protein. This model represents the ATP-binding protein of a family of ABC transporters for inorganic phosphate. In the model species Escherichia coli, a constitutive transporter for inorganic phosphate, with low affinity, is also present. The high affinity transporter that includes this polypeptide is induced when extracellular phosphate concentrations are low. The proteins most similar to the members of this family but not included appear to be amino acid transporters.
Probab=98.03 E-value=1.6e-05 Score=60.22 Aligned_cols=27 Identities=26% Similarity=0.522 Sum_probs=23.5
Q ss_pred CccEEEEEeCCCCcHHHHHHHHHhHHh
Q 035585 46 NVNIVGVYGMGGIGKTTLVKEFARQAS 72 (183)
Q Consensus 46 ~~~~v~i~G~~G~GKTtL~~~~~~~~~ 72 (183)
+..+++|.|++|+|||||++.+...+.
T Consensus 26 ~Ge~~~i~G~nGsGKSTLl~~l~G~~~ 52 (247)
T TIGR00972 26 KNQVTALIGPSGCGKSTLLRSLNRMND 52 (247)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhccCC
Confidence 457899999999999999999986653
No 336
>cd03236 ABC_RNaseL_inhibitor_domain1 The ATPase domain 1 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI s are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLIs have an N-terminal Fe-S domain and two nucleotide binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=98.03 E-value=4.6e-05 Score=58.15 Aligned_cols=28 Identities=32% Similarity=0.506 Sum_probs=24.1
Q ss_pred CCccEEEEEeCCCCcHHHHHHHHHhHHh
Q 035585 45 VNVNIVGVYGMGGIGKTTLVKEFARQAS 72 (183)
Q Consensus 45 ~~~~~v~i~G~~G~GKTtL~~~~~~~~~ 72 (183)
.+...++|+|++|+|||||++.+...++
T Consensus 24 ~~Ge~~~IvG~nGsGKSTLlk~l~Gl~~ 51 (255)
T cd03236 24 REGQVLGLVGPNGIGKSTALKILAGKLK 51 (255)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCcC
Confidence 3457999999999999999999987664
No 337
>PRK15064 ABC transporter ATP-binding protein; Provisional
Probab=98.03 E-value=2.7e-05 Score=65.45 Aligned_cols=126 Identities=13% Similarity=0.259 Sum_probs=64.6
Q ss_pred CccEEEEEeCCCCcHHHHHHHHHhHHhhhh---ccc---ceEEEEec------CCcCHHHH-------------HHHHHH
Q 035585 46 NVNIVGVYGMGGIGKTTLVKEFARQASEEK---LFD---QVVFSEVS------QTPDIKKI-------------HGEIAE 100 (183)
Q Consensus 46 ~~~~v~i~G~~G~GKTtL~~~~~~~~~~~~---~~~---~~~~~~~~------~~~~~~~~-------------~~~i~~ 100 (183)
+...++|.|++|+|||||++.++..+.... .+. .+.|+.-. ......+. ...+++
T Consensus 344 ~Ge~~~l~G~NGsGKSTLl~~i~G~~~p~~G~i~~~~~~~i~~~~q~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~l~ 423 (530)
T PRK15064 344 AGERLAIIGENGVGKTTLLRTLVGELEPDSGTVKWSENANIGYYAQDHAYDFENDLTLFDWMSQWRQEGDDEQAVRGTLG 423 (530)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCceEEEEEcccccccCCCCCcHHHHHHHhccCCccHHHHHHHHH
Confidence 446899999999999999999987654321 111 12222110 00111111 122233
Q ss_pred HhCCCc-------hhHHHHHHHHHHHHHHhcCCeEEEEEeCCCCcccc---cccCcCCCCCCCCcEEEEEecChHHHhhc
Q 035585 101 KLGLEF-------SEEAESRRASRLYERLKKEKMILVILDNIWKYLDL---ETVGIPFGDDHRGCKLLLTARDCNVLLNM 170 (183)
Q Consensus 101 ~l~~~~-------~~~~~~~~~~~~~~~~~~~~~~llvlD~~~~~~~~---~~l~~~~~~~~~~~~iiitsr~~~~~~~~ 170 (183)
.++... ...+..+.....+......++-+|++||..+..+. ..+...+... .+ .||++||+.+.+..+
T Consensus 424 ~~~l~~~~~~~~~~~LSgGq~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~-~~-tvi~vsHd~~~~~~~ 501 (530)
T PRK15064 424 RLLFSQDDIKKSVKVLSGGEKGRMLFGKLMMQKPNVLVMDEPTNHMDMESIESLNMALEKY-EG-TLIFVSHDREFVSSL 501 (530)
T ss_pred HcCCChhHhcCcccccCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHHC-CC-EEEEEeCCHHHHHHh
Confidence 332210 00111122222222222378889999998765432 1222222222 34 699999999988766
Q ss_pred CCC
Q 035585 171 SLC 173 (183)
Q Consensus 171 ~~~ 173 (183)
...
T Consensus 502 ~d~ 504 (530)
T PRK15064 502 ATR 504 (530)
T ss_pred CCE
Confidence 543
No 338
>PF14532 Sigma54_activ_2: Sigma-54 interaction domain; PDB: 3CO5_B 3N70_H.
Probab=98.03 E-value=2.4e-06 Score=59.05 Aligned_cols=44 Identities=18% Similarity=0.329 Sum_probs=29.6
Q ss_pred chHHHHHHHHHHhc--cCCccEEEEEeCCCCcHHHHHHHHHhHHhh
Q 035585 30 SRLSTLKSIQDALT--DVNVNIVGVYGMGGIGKTTLVKEFARQASE 73 (183)
Q Consensus 30 gR~~~l~~l~~~l~--~~~~~~v~i~G~~G~GKTtL~~~~~~~~~~ 73 (183)
|+-..+..+.+.+. .....-|+|+|++|+||+++|+.++..-..
T Consensus 2 G~S~~~~~l~~~l~~~a~~~~pvli~GE~GtGK~~~A~~lh~~~~~ 47 (138)
T PF14532_consen 2 GKSPAMRRLRRQLERLAKSSSPVLITGEPGTGKSLLARALHRYSGR 47 (138)
T ss_dssp -SCHHHHHHHHHHHHHHCSSS-EEEECCTTSSHHHHHHCCHHTTTT
T ss_pred CCCHHHHHHHHHHHHHhCCCCcEEEEcCCCCCHHHHHHHHHhhcCc
Confidence 34445555555444 234467899999999999999998876543
No 339
>COG1122 CbiO ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=98.03 E-value=1.9e-05 Score=59.37 Aligned_cols=28 Identities=29% Similarity=0.275 Sum_probs=23.2
Q ss_pred CccEEEEEeCCCCcHHHHHHHHHhHHhh
Q 035585 46 NVNIVGVYGMGGIGKTTLVKEFARQASE 73 (183)
Q Consensus 46 ~~~~v~i~G~~G~GKTtL~~~~~~~~~~ 73 (183)
....++|+|++|+|||||++.+.--+..
T Consensus 29 ~Ge~~~i~G~nGsGKSTL~~~l~GLl~p 56 (235)
T COG1122 29 KGERVLLIGPNGSGKSTLLKLLNGLLKP 56 (235)
T ss_pred CCCEEEEECCCCCCHHHHHHHHcCcCcC
Confidence 3468999999999999999998765543
No 340
>PRK10619 histidine/lysine/arginine/ornithine transporter subunit; Provisional
Probab=98.03 E-value=1.2e-05 Score=61.31 Aligned_cols=27 Identities=19% Similarity=0.388 Sum_probs=23.5
Q ss_pred CccEEEEEeCCCCcHHHHHHHHHhHHh
Q 035585 46 NVNIVGVYGMGGIGKTTLVKEFARQAS 72 (183)
Q Consensus 46 ~~~~v~i~G~~G~GKTtL~~~~~~~~~ 72 (183)
+...++|+|++|+|||||++.+.....
T Consensus 30 ~Ge~~~l~G~nGsGKSTLl~~i~G~~~ 56 (257)
T PRK10619 30 AGDVISIIGSSGSGKSTFLRCINFLEK 56 (257)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 457899999999999999999987653
No 341
>TIGR03796 NHPM_micro_ABC1 NHPM bacteriocin system ABC transporter, peptidase/ATP-binding protein. This protein describes an multidomain ABC transporter subunit that is one of three protein families associated with some regularity with a distinctive family of putative bacteriocins. It includes a bacteriocin-processing peptidase domain at the N-terminus. Model TIGR03793 describes a conserved propeptide region for this bacteriocin family, unusual because it shows obvious homology a region of the enzyme nitrile hydratase up to the classic Gly-Gly cleavage motif. This family is therefore predicted to be a subunit of a bacteriocin processing and export system characteristic to this system that we designate NHPM, Nitrile Hydratase Propeptide Microcin.
Probab=98.03 E-value=2.8e-05 Score=67.61 Aligned_cols=28 Identities=29% Similarity=0.246 Sum_probs=23.8
Q ss_pred CCccEEEEEeCCCCcHHHHHHHHHhHHh
Q 035585 45 VNVNIVGVYGMGGIGKTTLVKEFARQAS 72 (183)
Q Consensus 45 ~~~~~v~i~G~~G~GKTtL~~~~~~~~~ 72 (183)
.+...++|+|++|+|||||++.+...+.
T Consensus 503 ~~Ge~vaIvG~sGsGKSTLlklL~gl~~ 530 (710)
T TIGR03796 503 QPGQRVALVGGSGSGKSTIAKLVAGLYQ 530 (710)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence 3457899999999999999999986654
No 342
>cd03294 ABC_Pro_Gly_Bertaine This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.03 E-value=2.2e-05 Score=60.36 Aligned_cols=27 Identities=30% Similarity=0.486 Sum_probs=23.4
Q ss_pred CccEEEEEeCCCCcHHHHHHHHHhHHh
Q 035585 46 NVNIVGVYGMGGIGKTTLVKEFARQAS 72 (183)
Q Consensus 46 ~~~~v~i~G~~G~GKTtL~~~~~~~~~ 72 (183)
+..+++|.|++|+|||||++.++..+.
T Consensus 49 ~Ge~~~l~G~nGsGKSTLl~~L~Gl~~ 75 (269)
T cd03294 49 EGEIFVIMGLSGSGKSTLLRCINRLIE 75 (269)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence 457899999999999999999987653
No 343
>TIGR00958 3a01208 Conjugate Transporter-2 (CT2) Family protein.
Probab=98.02 E-value=5e-05 Score=66.06 Aligned_cols=29 Identities=21% Similarity=0.258 Sum_probs=24.6
Q ss_pred CCccEEEEEeCCCCcHHHHHHHHHhHHhh
Q 035585 45 VNVNIVGVYGMGGIGKTTLVKEFARQASE 73 (183)
Q Consensus 45 ~~~~~v~i~G~~G~GKTtL~~~~~~~~~~ 73 (183)
.+...++|+|++|+|||||++.+...+..
T Consensus 505 ~~Ge~vaIvG~SGsGKSTLl~lL~gl~~p 533 (711)
T TIGR00958 505 HPGEVVALVGPSGSGKSTVAALLQNLYQP 533 (711)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHhccCC
Confidence 35578999999999999999999876643
No 344
>KOG0729 consensus 26S proteasome regulatory complex, ATPase RPT1 [Posttranslational modification, protein turnover, chaperones]
Probab=98.02 E-value=4.5e-05 Score=57.94 Aligned_cols=88 Identities=20% Similarity=0.278 Sum_probs=58.4
Q ss_pred cchHHHHHHHHHHhc-------------cCCccEEEEEeCCCCcHHHHHHHHHhHHhhhhcccceEEEEecCCcCHHHHH
Q 035585 29 KSRLSTLKSIQDALT-------------DVNVNIVGVYGMGGIGKTTLVKEFARQASEEKLFDQVVFSEVSQTPDIKKIH 95 (183)
Q Consensus 29 ~gR~~~l~~l~~~l~-------------~~~~~~v~i~G~~G~GKTtL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 95 (183)
=|=+++++.|.+..+ =+++.-++++||+|+|||.+|++++++-... |+.+-.
T Consensus 180 ggckeqieklrevve~pll~perfv~lgidppkgvllygppgtgktl~aravanrtdac-------firvig-------- 244 (435)
T KOG0729|consen 180 GGCKEQIEKLREVVELPLLHPERFVNLGIDPPKGVLLYGPPGTGKTLCARAVANRTDAC-------FIRVIG-------- 244 (435)
T ss_pred cchHHHHHHHHHHHhccccCHHHHhhcCCCCCCceEEeCCCCCchhHHHHHHhcccCce-------EEeehh--------
Confidence 345666777766543 2466779999999999999999999874432 333222
Q ss_pred HHHHHHhCCCchhHHHHHHHHHHHHHHhcCCeEEEEEeCCC
Q 035585 96 GEIAEKLGLEFSEEAESRRASRLYERLKKEKMILVILDNIW 136 (183)
Q Consensus 96 ~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~llvlD~~~ 136 (183)
+.+..... .....+++++++..+..+..+++||+++
T Consensus 245 selvqkyv-----gegarmvrelf~martkkaciiffdeid 280 (435)
T KOG0729|consen 245 SELVQKYV-----GEGARMVRELFEMARTKKACIIFFDEID 280 (435)
T ss_pred HHHHHHHh-----hhhHHHHHHHHHHhcccceEEEEeeccc
Confidence 12222111 1234567788888887888999999987
No 345
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional
Probab=98.02 E-value=4.7e-05 Score=60.88 Aligned_cols=90 Identities=18% Similarity=0.234 Sum_probs=56.4
Q ss_pred CccEEEEEeCCCCcHHHHHHHHHhHHhhhhcccceEEEEecCC-cCHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHHh-
Q 035585 46 NVNIVGVYGMGGIGKTTLVKEFARQASEEKLFDQVVFSEVSQT-PDIKKIHGEIAEKLGLEFSEEAESRRASRLYERLK- 123 (183)
Q Consensus 46 ~~~~v~i~G~~G~GKTtL~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~- 123 (183)
+.++++++|++|+||||++..++..+..+ ...+.++++... ....+.+...++.++.+.........+...+..+.
T Consensus 205 ~~~ii~lvGptGvGKTTt~akLA~~l~~~--g~~V~lItaDtyR~gAveQLk~yae~lgvpv~~~~dp~dL~~al~~l~~ 282 (407)
T PRK12726 205 NHRIISLIGQTGVGKTTTLVKLGWQLLKQ--NRTVGFITTDTFRSGAVEQFQGYADKLDVELIVATSPAELEEAVQYMTY 282 (407)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHc--CCeEEEEeCCccCccHHHHHHHHhhcCCCCEEecCCHHHHHHHHHHHHh
Confidence 45789999999999999999998876544 234667776544 33455666777766654332222222333344443
Q ss_pred cCCeEEEEEeCCCC
Q 035585 124 KEKMILVILDNIWK 137 (183)
Q Consensus 124 ~~~~~llvlD~~~~ 137 (183)
.+..-+|++|-+..
T Consensus 283 ~~~~D~VLIDTAGr 296 (407)
T PRK12726 283 VNCVDHILIDTVGR 296 (407)
T ss_pred cCCCCEEEEECCCC
Confidence 24457888887643
No 346
>cd03250 ABCC_MRP_domain1 Domain 1 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=98.02 E-value=6e-05 Score=55.45 Aligned_cols=29 Identities=21% Similarity=0.362 Sum_probs=24.7
Q ss_pred CCccEEEEEeCCCCcHHHHHHHHHhHHhh
Q 035585 45 VNVNIVGVYGMGGIGKTTLVKEFARQASE 73 (183)
Q Consensus 45 ~~~~~v~i~G~~G~GKTtL~~~~~~~~~~ 73 (183)
.+...++|.|++|+|||||++.+......
T Consensus 29 ~~G~~~~i~G~nG~GKSTLl~~i~G~~~~ 57 (204)
T cd03250 29 PKGELVAIVGPVGSGKSSLLSALLGELEK 57 (204)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCcCCC
Confidence 34578999999999999999999887654
No 347
>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion]
Probab=98.02 E-value=8.8e-05 Score=59.43 Aligned_cols=89 Identities=16% Similarity=0.196 Sum_probs=56.2
Q ss_pred CccEEEEEeCCCCcHHHHHHHHHhHHhhhhcccceEEEEecCC-cCHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHHhc
Q 035585 46 NVNIVGVYGMGGIGKTTLVKEFARQASEEKLFDQVVFSEVSQT-PDIKKIHGEIAEKLGLEFSEEAESRRASRLYERLKK 124 (183)
Q Consensus 46 ~~~~v~i~G~~G~GKTtL~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~ 124 (183)
+.+++.++||+|+||||-...++.++.-..--..+.++...+- ....+.+...++.++.+..-......+......+.
T Consensus 202 ~~~vi~LVGPTGVGKTTTlAKLAar~~~~~~~~kVaiITtDtYRIGA~EQLk~Ya~im~vp~~vv~~~~el~~ai~~l~- 280 (407)
T COG1419 202 QKRVIALVGPTGVGKTTTLAKLAARYVMLKKKKKVAIITTDTYRIGAVEQLKTYADIMGVPLEVVYSPKELAEAIEALR- 280 (407)
T ss_pred cCcEEEEECCCCCcHHHHHHHHHHHHHhhccCcceEEEEeccchhhHHHHHHHHHHHhCCceEEecCHHHHHHHHHHhh-
Confidence 4789999999999999666666665552111334666666543 34556667777777777665444444555555553
Q ss_pred CCeEEEEEeCCC
Q 035585 125 EKMILVILDNIW 136 (183)
Q Consensus 125 ~~~~llvlD~~~ 136 (183)
..-+|++|=+.
T Consensus 281 -~~d~ILVDTaG 291 (407)
T COG1419 281 -DCDVILVDTAG 291 (407)
T ss_pred -cCCEEEEeCCC
Confidence 33566677553
No 348
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=98.02 E-value=0.00011 Score=60.05 Aligned_cols=87 Identities=23% Similarity=0.295 Sum_probs=53.3
Q ss_pred CccEEEEEeCCCCcHHHHHHHHHhHHhhhhcccceEEEEecCC-cCHHHHHHHHHHHhCCCchhH----HHHHHHHHHHH
Q 035585 46 NVNIVGVYGMGGIGKTTLVKEFARQASEEKLFDQVVFSEVSQT-PDIKKIHGEIAEKLGLEFSEE----AESRRASRLYE 120 (183)
Q Consensus 46 ~~~~v~i~G~~G~GKTtL~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~i~~~l~~~~~~~----~~~~~~~~~~~ 120 (183)
++.++.++|++|+||||++..++..+.... ..+..+.+... +...+.+..+++.++.+.... ...........
T Consensus 94 ~p~vI~lvG~~GsGKTTtaakLA~~L~~~g--~kV~lV~~D~~R~aa~eQL~~la~~~gvp~~~~~~~~d~~~i~~~al~ 171 (437)
T PRK00771 94 KPQTIMLVGLQGSGKTTTAAKLARYFKKKG--LKVGLVAADTYRPAAYDQLKQLAEKIGVPFYGDPDNKDAVEIAKEGLE 171 (437)
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHHHcC--CeEEEecCCCCCHHHHHHHHHHHHHcCCcEEecCCccCHHHHHHHHHH
Confidence 467899999999999999999998887642 23555555432 234555666777765543221 11222233333
Q ss_pred HHhcCCeEEEEEeCCC
Q 035585 121 RLKKEKMILVILDNIW 136 (183)
Q Consensus 121 ~~~~~~~~llvlD~~~ 136 (183)
... . .-+||+|.+-
T Consensus 172 ~~~-~-~DvVIIDTAG 185 (437)
T PRK00771 172 KFK-K-ADVIIVDTAG 185 (437)
T ss_pred Hhh-c-CCEEEEECCC
Confidence 333 2 3678888874
No 349
>PRK13645 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=98.02 E-value=1.9e-05 Score=61.38 Aligned_cols=27 Identities=22% Similarity=0.293 Sum_probs=23.3
Q ss_pred CccEEEEEeCCCCcHHHHHHHHHhHHh
Q 035585 46 NVNIVGVYGMGGIGKTTLVKEFARQAS 72 (183)
Q Consensus 46 ~~~~v~i~G~~G~GKTtL~~~~~~~~~ 72 (183)
+..+++|.|++|+|||||++.+...+.
T Consensus 36 ~Ge~~~l~G~nGsGKSTLl~~l~Gl~~ 62 (289)
T PRK13645 36 KNKVTCVIGTTGSGKSTMIQLTNGLII 62 (289)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence 447899999999999999999986653
No 350
>PRK06696 uridine kinase; Validated
Probab=98.02 E-value=1.2e-05 Score=60.21 Aligned_cols=44 Identities=25% Similarity=0.334 Sum_probs=35.9
Q ss_pred chHHHHHHHHHHhc---cCCccEEEEEeCCCCcHHHHHHHHHhHHhh
Q 035585 30 SRLSTLKSIQDALT---DVNVNIVGVYGMGGIGKTTLVKEFARQASE 73 (183)
Q Consensus 30 gR~~~l~~l~~~l~---~~~~~~v~i~G~~G~GKTtL~~~~~~~~~~ 73 (183)
.|.+.++.|.+.+. ..++.+|+|.|++|+||||||+.+...+..
T Consensus 2 ~~~~~~~~la~~~~~~~~~~~~iI~I~G~sgsGKSTlA~~L~~~l~~ 48 (223)
T PRK06696 2 SRKQLIKELAEHILTLNLTRPLRVAIDGITASGKTTFADELAEEIKK 48 (223)
T ss_pred cHHHHHHHHHHHHHHhCCCCceEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 36677777777664 456789999999999999999999998864
No 351
>PRK06871 DNA polymerase III subunit delta'; Validated
Probab=98.02 E-value=7.2e-05 Score=58.93 Aligned_cols=125 Identities=11% Similarity=0.143 Sum_probs=70.5
Q ss_pred HHHHHHHHHhccCC-ccEEEEEeCCCCcHHHHHHHHHhHHhhhhccc--c------eEEEEecCCcCHHHHHHHHHHHhC
Q 035585 33 STLKSIQDALTDVN-VNIVGVYGMGGIGKTTLVKEFARQASEEKLFD--Q------VVFSEVSQTPDIKKIHGEIAEKLG 103 (183)
Q Consensus 33 ~~l~~l~~~l~~~~-~~~v~i~G~~G~GKTtL~~~~~~~~~~~~~~~--~------~~~~~~~~~~~~~~~~~~i~~~l~ 103 (183)
.....|.+.+.+++ ++.++++|+.|+||+++|+.++..+-...... . +..+.....+++..+. .
T Consensus 9 ~~~~~l~~~~~~~rl~HA~Lf~G~~G~GK~~lA~~~A~~llC~~~~~~~~Cg~C~sC~~~~~g~HPD~~~i~-------p 81 (325)
T PRK06871 9 PTYQQITQAFQQGLGHHALLFKADSGLGTEQLIRALAQWLMCQTPQGDQPCGQCHSCHLFQAGNHPDFHILE-------P 81 (325)
T ss_pred HHHHHHHHHHHcCCcceeEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHhcCCCCCEEEEc-------c
Confidence 44556666666544 46788999999999999999998775421110 0 0000111111111000 0
Q ss_pred CCchhHHHHHHHHHHHHHH----hcCCeEEEEEeCCCCcc--cccccCcCCCCCCCCcEEEEEecChH
Q 035585 104 LEFSEEAESRRASRLYERL----KKEKMILVILDNIWKYL--DLETVGIPFGDDHRGCKLLLTARDCN 165 (183)
Q Consensus 104 ~~~~~~~~~~~~~~~~~~~----~~~~~~llvlD~~~~~~--~~~~l~~~~~~~~~~~~iiitsr~~~ 165 (183)
.... ....+.++.+.+.+ .+++..++|||+++.+. ..+.++..+....+++.+|++|.+.+
T Consensus 82 ~~~~-~I~id~iR~l~~~~~~~~~~g~~KV~iI~~a~~m~~~AaNaLLKtLEEPp~~~~fiL~t~~~~ 148 (325)
T PRK06871 82 IDNK-DIGVDQVREINEKVSQHAQQGGNKVVYIQGAERLTEAAANALLKTLEEPRPNTYFLLQADLSA 148 (325)
T ss_pred ccCC-CCCHHHHHHHHHHHhhccccCCceEEEEechhhhCHHHHHHHHHHhcCCCCCeEEEEEECChH
Confidence 0000 00112223333322 23677899999999874 56677777777777888888887654
No 352
>TIGR01288 nodI ATP-binding ABC transporter family nodulation protein NodI. This model does not recognize the highly divergent NodI from Azorhizobium caulinodans.
Probab=98.02 E-value=1.9e-05 Score=61.81 Aligned_cols=27 Identities=26% Similarity=0.412 Sum_probs=23.4
Q ss_pred CccEEEEEeCCCCcHHHHHHHHHhHHh
Q 035585 46 NVNIVGVYGMGGIGKTTLVKEFARQAS 72 (183)
Q Consensus 46 ~~~~v~i~G~~G~GKTtL~~~~~~~~~ 72 (183)
+...++|.|++|+|||||++.+.....
T Consensus 29 ~Ge~~~l~G~NGaGKSTLl~~l~Gl~~ 55 (303)
T TIGR01288 29 RGECFGLLGPNGAGKSTIARMLLGMIS 55 (303)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCCC
Confidence 457899999999999999999987553
No 353
>PRK14256 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.02 E-value=3.7e-05 Score=58.49 Aligned_cols=26 Identities=23% Similarity=0.508 Sum_probs=23.3
Q ss_pred CccEEEEEeCCCCcHHHHHHHHHhHH
Q 035585 46 NVNIVGVYGMGGIGKTTLVKEFARQA 71 (183)
Q Consensus 46 ~~~~v~i~G~~G~GKTtL~~~~~~~~ 71 (183)
+...++|+|++|+|||||++.++..+
T Consensus 29 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 54 (252)
T PRK14256 29 ENSVTAIIGPSGCGKSTVLRSINRMH 54 (252)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhcc
Confidence 45789999999999999999998765
No 354
>PLN03073 ABC transporter F family; Provisional
Probab=98.02 E-value=1.4e-05 Score=69.23 Aligned_cols=49 Identities=16% Similarity=0.030 Sum_probs=32.2
Q ss_pred CCeEEEEEeCCCCccccccc---CcCCCCCCCCcEEEEEecChHHHhhcCCCCc
Q 035585 125 EKMILVILDNIWKYLDLETV---GIPFGDDHRGCKLLLTARDCNVLLNMSLCRS 175 (183)
Q Consensus 125 ~~~~llvlD~~~~~~~~~~l---~~~~~~~~~~~~iiitsr~~~~~~~~~~~~~ 175 (183)
.++-+|+|||..+..+.... ...+... +..+|++||+..++..+.+...
T Consensus 361 ~~p~lLlLDEPt~~LD~~~~~~l~~~L~~~--~~tviivsHd~~~l~~~~d~i~ 412 (718)
T PLN03073 361 IEPDLLLLDEPTNHLDLHAVLWLETYLLKW--PKTFIVVSHAREFLNTVVTDIL 412 (718)
T ss_pred cCCCEEEEECCCCCCCHHHHHHHHHHHHHc--CCEEEEEECCHHHHHHhCCEEE
Confidence 67789999999876542222 2222221 4569999999999887655433
No 355
>TIGR02203 MsbA_lipidA lipid A export permease/ATP-binding protein MsbA. This family consists of a single polypeptide chain transporter in the ATP-binding cassette (ABC) transporter family, MsbA, which exports lipid A. It may also act in multidrug resistance. Lipid A, a part of lipopolysaccharide, is found in the outer leaflet of the outer membrane of most Gram-negative bacteria. Members of this family are restricted to the Proteobacteria (although lipid A is more broadly distributed) and often are clustered with lipid A biosynthesis genes.
Probab=98.02 E-value=2.4e-05 Score=66.31 Aligned_cols=28 Identities=32% Similarity=0.353 Sum_probs=23.9
Q ss_pred CCccEEEEEeCCCCcHHHHHHHHHhHHh
Q 035585 45 VNVNIVGVYGMGGIGKTTLVKEFARQAS 72 (183)
Q Consensus 45 ~~~~~v~i~G~~G~GKTtL~~~~~~~~~ 72 (183)
.+...++|+|++|+|||||++.+...+.
T Consensus 356 ~~G~~v~IvG~sGsGKSTLl~lL~gl~~ 383 (571)
T TIGR02203 356 EPGETVALVGRSGSGKSTLVNLIPRFYE 383 (571)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHhccC
Confidence 3557899999999999999999986654
No 356
>TIGR03005 ectoine_ehuA ectoine/hydroxyectoine ABC transporter, ATP-binding protein. Members of this family are the ATP-binding protein of a conserved four gene ABC transporter operon found next to ectoine unilization operons and ectoine biosynthesis operons. Ectoine is a compatible solute that protects enzymes from high osmolarity. It is released by some species in response to hypoosmotic shock, and it is taken up by a number of bacteria as a compatible solute or for consumption. This family shows strong sequence similiarity to a number of amino acid ABC transporter ATP-binding proteins.
Probab=98.02 E-value=2.9e-05 Score=59.06 Aligned_cols=27 Identities=22% Similarity=0.346 Sum_probs=23.3
Q ss_pred CccEEEEEeCCCCcHHHHHHHHHhHHh
Q 035585 46 NVNIVGVYGMGGIGKTTLVKEFARQAS 72 (183)
Q Consensus 46 ~~~~v~i~G~~G~GKTtL~~~~~~~~~ 72 (183)
+...++|.|++|+|||||++.+...+.
T Consensus 25 ~Ge~~~i~G~nGsGKSTLl~~l~G~~~ 51 (252)
T TIGR03005 25 AGEKVALIGPSGSGKSTILRILMTLEP 51 (252)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 457899999999999999999986553
No 357
>COG0396 sufC Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=98.02 E-value=2.4e-05 Score=57.95 Aligned_cols=56 Identities=20% Similarity=0.176 Sum_probs=37.0
Q ss_pred HHHHHHHhcCCeEEEEEeCCCCcccccccCcC---CC-CCCCCcEEEEEecChHHHhhcCC
Q 035585 116 SRLYERLKKEKMILVILDNIWKYLDLETVGIP---FG-DDHRGCKLLLTARDCNVLLNMSL 172 (183)
Q Consensus 116 ~~~~~~~~~~~~~llvlD~~~~~~~~~~l~~~---~~-~~~~~~~iiitsr~~~~~~~~~~ 172 (183)
.++++.+. -++-+.||||.|+..+++.+... +. -..+++.+++.||-..++.-+..
T Consensus 153 ~EilQ~~~-lePkl~ILDE~DSGLDIdalk~V~~~i~~lr~~~~~~liITHy~rll~~i~p 212 (251)
T COG0396 153 NEILQLLL-LEPKLAILDEPDSGLDIDALKIVAEGINALREEGRGVLIITHYQRLLDYIKP 212 (251)
T ss_pred HHHHHHHh-cCCCEEEecCCCcCccHHHHHHHHHHHHHHhcCCCeEEEEecHHHHHhhcCC
Confidence 34444444 67889999999988766555211 11 12346678899999888887653
No 358
>PRK11701 phnK phosphonate C-P lyase system protein PhnK; Provisional
Probab=98.02 E-value=1.9e-05 Score=60.29 Aligned_cols=26 Identities=31% Similarity=0.567 Sum_probs=23.0
Q ss_pred CccEEEEEeCCCCcHHHHHHHHHhHH
Q 035585 46 NVNIVGVYGMGGIGKTTLVKEFARQA 71 (183)
Q Consensus 46 ~~~~v~i~G~~G~GKTtL~~~~~~~~ 71 (183)
+...++|.|++|+|||||++.++..+
T Consensus 31 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 56 (258)
T PRK11701 31 PGEVLGIVGESGSGKTTLLNALSARL 56 (258)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 45789999999999999999998754
No 359
>PRK13646 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=98.02 E-value=2.2e-05 Score=60.94 Aligned_cols=27 Identities=22% Similarity=0.358 Sum_probs=23.3
Q ss_pred CccEEEEEeCCCCcHHHHHHHHHhHHh
Q 035585 46 NVNIVGVYGMGGIGKTTLVKEFARQAS 72 (183)
Q Consensus 46 ~~~~v~i~G~~G~GKTtL~~~~~~~~~ 72 (183)
+...++|.|++|+|||||++.++..+.
T Consensus 32 ~Ge~~~i~G~nGsGKSTLl~~L~Gl~~ 58 (286)
T PRK13646 32 QGKYYAIVGQTGSGKSTLIQNINALLK 58 (286)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence 447899999999999999999986553
No 360
>PRK14249 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.01 E-value=4.2e-05 Score=58.10 Aligned_cols=27 Identities=30% Similarity=0.550 Sum_probs=23.6
Q ss_pred CccEEEEEeCCCCcHHHHHHHHHhHHh
Q 035585 46 NVNIVGVYGMGGIGKTTLVKEFARQAS 72 (183)
Q Consensus 46 ~~~~v~i~G~~G~GKTtL~~~~~~~~~ 72 (183)
+...++|.|++|+|||||++.+.....
T Consensus 29 ~G~~~~i~G~nGsGKSTLl~~l~Gl~~ 55 (251)
T PRK14249 29 ERQITAIIGPSGCGKSTLLRALNRMND 55 (251)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcccC
Confidence 457899999999999999999987654
No 361
>COG4133 CcmA ABC-type transport system involved in cytochrome c biogenesis, ATPase component [Posttranslational modification, protein turnover, chaperones]
Probab=98.01 E-value=1.5e-05 Score=57.37 Aligned_cols=29 Identities=28% Similarity=0.370 Sum_probs=24.5
Q ss_pred CccEEEEEeCCCCcHHHHHHHHHhHHhhh
Q 035585 46 NVNIVGVYGMGGIGKTTLVKEFARQASEE 74 (183)
Q Consensus 46 ~~~~v~i~G~~G~GKTtL~~~~~~~~~~~ 74 (183)
....+.|.|++|+|||||.+.++..++..
T Consensus 27 ~Ge~~~i~G~NG~GKTtLLRilaGLl~p~ 55 (209)
T COG4133 27 AGEALQITGPNGAGKTTLLRILAGLLRPD 55 (209)
T ss_pred CCCEEEEECCCCCcHHHHHHHHHcccCCC
Confidence 34678999999999999999998776653
No 362
>COG1127 Ttg2A ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=98.01 E-value=2.6e-05 Score=58.17 Aligned_cols=29 Identities=24% Similarity=0.330 Sum_probs=24.2
Q ss_pred CCccEEEEEeCCCCcHHHHHHHHHhHHhh
Q 035585 45 VNVNIVGVYGMGGIGKTTLVKEFARQASE 73 (183)
Q Consensus 45 ~~~~~v~i~G~~G~GKTtL~~~~~~~~~~ 73 (183)
.+..+++|.|++|+|||||++.+...++.
T Consensus 32 ~~Gei~~iiGgSGsGKStlLr~I~Gll~P 60 (263)
T COG1127 32 PRGEILAILGGSGSGKSTLLRLILGLLRP 60 (263)
T ss_pred cCCcEEEEECCCCcCHHHHHHHHhccCCC
Confidence 35578999999999999999999865543
No 363
>PRK15177 Vi polysaccharide export ATP-binding protein VexC; Provisional
Probab=98.01 E-value=3.9e-05 Score=56.95 Aligned_cols=27 Identities=26% Similarity=0.378 Sum_probs=23.6
Q ss_pred CccEEEEEeCCCCcHHHHHHHHHhHHh
Q 035585 46 NVNIVGVYGMGGIGKTTLVKEFARQAS 72 (183)
Q Consensus 46 ~~~~v~i~G~~G~GKTtL~~~~~~~~~ 72 (183)
+...++|.|++|+|||||++.++....
T Consensus 12 ~Ge~~~l~G~NGsGKSTLlk~i~Gl~~ 38 (213)
T PRK15177 12 YHEHIGILAAPGSGKTTLTRLLCGLDA 38 (213)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCcc
Confidence 347899999999999999999987654
No 364
>cd03240 ABC_Rad50 The catalytic domains of Rad50 are similar to the ATP-binding cassette of ABC transporters, but are not associated with membrane-spanning domains. The conserved ATP-binding motifs common to Rad50 and the ABC transporter family include the Walker A and Walker B motifs, the Q loop, a histidine residue in the switch region, a D-loop, and a conserved LSGG sequence. This conserved sequence, LSGG, is the most specific and characteristic motif of this family and is thus known as the ABC signature sequence.
Probab=98.01 E-value=3.7e-05 Score=56.74 Aligned_cols=45 Identities=16% Similarity=0.234 Sum_probs=29.3
Q ss_pred CCeEEEEEeCCCCccc---cc-ccCcCCCCC-CC-CcEEEEEecChHHHhh
Q 035585 125 EKMILVILDNIWKYLD---LE-TVGIPFGDD-HR-GCKLLLTARDCNVLLN 169 (183)
Q Consensus 125 ~~~~llvlD~~~~~~~---~~-~l~~~~~~~-~~-~~~iiitsr~~~~~~~ 169 (183)
.++-++++||+....+ .. .+...+... .. +..+|++||+.++...
T Consensus 138 ~~p~illlDEP~~~LD~~~~~~~l~~~l~~~~~~~~~~iiiitH~~~~~~~ 188 (204)
T cd03240 138 SNCGILALDEPTTNLDEENIEESLAEIIEERKSQKNFQLIVITHDEELVDA 188 (204)
T ss_pred cCCCEEEEcCCccccCHHHHHHHHHHHHHHHHhccCCEEEEEEecHHHHhh
Confidence 7889999999875543 22 333333222 22 5579999999887754
No 365
>PRK13649 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=98.01 E-value=1.9e-05 Score=61.01 Aligned_cols=26 Identities=19% Similarity=0.299 Sum_probs=22.8
Q ss_pred CccEEEEEeCCCCcHHHHHHHHHhHH
Q 035585 46 NVNIVGVYGMGGIGKTTLVKEFARQA 71 (183)
Q Consensus 46 ~~~~v~i~G~~G~GKTtL~~~~~~~~ 71 (183)
+..+++|.|++|+|||||++.++..+
T Consensus 32 ~Ge~~~l~G~nGsGKSTLl~~i~Gl~ 57 (280)
T PRK13649 32 DGSYTAFIGHTGSGKSTIMQLLNGLH 57 (280)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 44689999999999999999998654
No 366
>cd03300 ABC_PotA_N PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D. PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.01 E-value=2.8e-05 Score=58.42 Aligned_cols=28 Identities=29% Similarity=0.379 Sum_probs=24.2
Q ss_pred CccEEEEEeCCCCcHHHHHHHHHhHHhh
Q 035585 46 NVNIVGVYGMGGIGKTTLVKEFARQASE 73 (183)
Q Consensus 46 ~~~~v~i~G~~G~GKTtL~~~~~~~~~~ 73 (183)
+...++|.|++|+|||||++.++.....
T Consensus 25 ~Ge~~~i~G~nGsGKSTLl~~l~g~~~~ 52 (232)
T cd03300 25 EGEFFTLLGPSGCGKTTLLRLIAGFETP 52 (232)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCCCC
Confidence 4578999999999999999999877643
No 367
>PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional
Probab=98.01 E-value=3.8e-05 Score=64.28 Aligned_cols=26 Identities=31% Similarity=0.392 Sum_probs=22.9
Q ss_pred CccEEEEEeCCCCcHHHHHHHHHhHH
Q 035585 46 NVNIVGVYGMGGIGKTTLVKEFARQA 71 (183)
Q Consensus 46 ~~~~v~i~G~~G~GKTtL~~~~~~~~ 71 (183)
+..+++|+|++|+|||||++.+...+
T Consensus 36 ~Ge~~~liG~NGsGKSTLl~~l~Gl~ 61 (510)
T PRK15439 36 AGEVHALLGGNGAGKSTLMKIIAGIV 61 (510)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 44789999999999999999998655
No 368
>PRK14257 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.01 E-value=2.5e-05 Score=61.76 Aligned_cols=27 Identities=19% Similarity=0.433 Sum_probs=23.4
Q ss_pred CccEEEEEeCCCCcHHHHHHHHHhHHh
Q 035585 46 NVNIVGVYGMGGIGKTTLVKEFARQAS 72 (183)
Q Consensus 46 ~~~~v~i~G~~G~GKTtL~~~~~~~~~ 72 (183)
+...++|+|++|+|||||++.++....
T Consensus 107 ~Ge~v~IvG~~GsGKSTLl~~L~g~~~ 133 (329)
T PRK14257 107 RNKVTAFIGPSGCGKSTFLRNLNQLND 133 (329)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcccc
Confidence 346899999999999999999987653
No 369
>PRK15093 antimicrobial peptide ABC transporter ATP-binding protein; Provisional
Probab=98.01 E-value=3.7e-05 Score=60.85 Aligned_cols=27 Identities=26% Similarity=0.414 Sum_probs=23.6
Q ss_pred CccEEEEEeCCCCcHHHHHHHHHhHHh
Q 035585 46 NVNIVGVYGMGGIGKTTLVKEFARQAS 72 (183)
Q Consensus 46 ~~~~v~i~G~~G~GKTtL~~~~~~~~~ 72 (183)
+..+++|+|++|+|||||++.+.....
T Consensus 32 ~Ge~~~ivG~sGsGKSTLl~~i~Gl~~ 58 (330)
T PRK15093 32 EGEIRGLVGESGSGKSLIAKAICGVTK 58 (330)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHccCC
Confidence 457899999999999999999987653
No 370
>cd03231 ABC_CcmA_heme_exporter CcmA, the ATP-binding component of the bacterial CcmAB transporter. The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperone that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE.
Probab=98.00 E-value=2e-05 Score=57.95 Aligned_cols=27 Identities=33% Similarity=0.398 Sum_probs=23.3
Q ss_pred CccEEEEEeCCCCcHHHHHHHHHhHHh
Q 035585 46 NVNIVGVYGMGGIGKTTLVKEFARQAS 72 (183)
Q Consensus 46 ~~~~v~i~G~~G~GKTtL~~~~~~~~~ 72 (183)
+...++|.|++|+|||||++.+...+.
T Consensus 25 ~Ge~~~i~G~nGsGKSTLl~~l~G~~~ 51 (201)
T cd03231 25 AGEALQVTGPNGSGKTTLLRILAGLSP 51 (201)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 457899999999999999999986553
No 371
>TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family. Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown.
Probab=98.00 E-value=2.6e-05 Score=65.94 Aligned_cols=28 Identities=36% Similarity=0.555 Sum_probs=24.1
Q ss_pred CccEEEEEeCCCCcHHHHHHHHHhHHhh
Q 035585 46 NVNIVGVYGMGGIGKTTLVKEFARQASE 73 (183)
Q Consensus 46 ~~~~v~i~G~~G~GKTtL~~~~~~~~~~ 73 (183)
+...++|+|++|+|||||++.++.....
T Consensus 30 ~Ge~~~liG~NGsGKSTLl~~i~G~~~p 57 (552)
T TIGR03719 30 PGAKIGVLGLNGAGKSTLLRIMAGVDKE 57 (552)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCC
Confidence 4468999999999999999999977643
No 372
>PRK13643 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=98.00 E-value=1.7e-05 Score=61.55 Aligned_cols=26 Identities=23% Similarity=0.356 Sum_probs=22.9
Q ss_pred CccEEEEEeCCCCcHHHHHHHHHhHH
Q 035585 46 NVNIVGVYGMGGIGKTTLVKEFARQA 71 (183)
Q Consensus 46 ~~~~v~i~G~~G~GKTtL~~~~~~~~ 71 (183)
+...++|.|++|+|||||++.+...+
T Consensus 31 ~Ge~v~i~G~nGsGKSTLl~~l~Gl~ 56 (288)
T PRK13643 31 KGSYTALIGHTGSGKSTLLQHLNGLL 56 (288)
T ss_pred CCCEEEEECCCCChHHHHHHHHhcCC
Confidence 45789999999999999999998654
No 373
>PRK14254 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.00 E-value=3.6e-05 Score=59.71 Aligned_cols=27 Identities=22% Similarity=0.444 Sum_probs=23.4
Q ss_pred CccEEEEEeCCCCcHHHHHHHHHhHHh
Q 035585 46 NVNIVGVYGMGGIGKTTLVKEFARQAS 72 (183)
Q Consensus 46 ~~~~v~i~G~~G~GKTtL~~~~~~~~~ 72 (183)
+...++|.|++|+|||||++.+...+.
T Consensus 64 ~Ge~~~I~G~nGsGKSTLl~~l~Gl~~ 90 (285)
T PRK14254 64 ENQVTAMIGPSGCGKSTFLRCINRMND 90 (285)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhccCC
Confidence 457899999999999999999986643
No 374
>PRK13638 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=98.00 E-value=1.7e-05 Score=60.95 Aligned_cols=27 Identities=26% Similarity=0.418 Sum_probs=23.1
Q ss_pred CccEEEEEeCCCCcHHHHHHHHHhHHh
Q 035585 46 NVNIVGVYGMGGIGKTTLVKEFARQAS 72 (183)
Q Consensus 46 ~~~~v~i~G~~G~GKTtL~~~~~~~~~ 72 (183)
+...++|+|++|+|||||++.+...+.
T Consensus 26 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~~ 52 (271)
T PRK13638 26 LSPVTGLVGANGCGKSTLFMNLSGLLR 52 (271)
T ss_pred CCCEEEEECCCCCCHHHHHHHHcCCCC
Confidence 447899999999999999999986543
No 375
>PRK10418 nikD nickel transporter ATP-binding protein NikD; Provisional
Probab=98.00 E-value=3.4e-05 Score=58.76 Aligned_cols=28 Identities=14% Similarity=0.137 Sum_probs=24.0
Q ss_pred CCccEEEEEeCCCCcHHHHHHHHHhHHh
Q 035585 45 VNVNIVGVYGMGGIGKTTLVKEFARQAS 72 (183)
Q Consensus 45 ~~~~~v~i~G~~G~GKTtL~~~~~~~~~ 72 (183)
.+...++|.|++|+|||||++.+.....
T Consensus 27 ~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~ 54 (254)
T PRK10418 27 QRGRVLALVGGSGSGKSLTCAAALGILP 54 (254)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 3457899999999999999999987654
No 376
>COG1119 ModF ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism]
Probab=98.00 E-value=5e-05 Score=56.81 Aligned_cols=25 Identities=28% Similarity=0.349 Sum_probs=21.2
Q ss_pred ccEEEEEeCCCCcHHHHHHHHHhHH
Q 035585 47 VNIVGVYGMGGIGKTTLVKEFARQA 71 (183)
Q Consensus 47 ~~~v~i~G~~G~GKTtL~~~~~~~~ 71 (183)
.....|+|++|+|||||++.+...+
T Consensus 57 ge~W~I~G~NGsGKTTLL~ll~~~~ 81 (257)
T COG1119 57 GEHWAIVGPNGAGKTTLLSLLTGEH 81 (257)
T ss_pred CCcEEEECCCCCCHHHHHHHHhccc
Confidence 3568899999999999999997544
No 377
>PF08423 Rad51: Rad51; InterPro: IPR013632 This domain is found at the C terminus of the DNA repair and recombination protein Rad51. It is critical for DNA binding []. Rad51 is a homologue of the bacterial RecA protein. Rad51 and RecA share a core ATPase domain.; PDB: 2ZUC_A 2Z43_C 2ZUD_B 2DFL_A 2ZUB_A 2BKE_A 2KZ3_A 2CVH_B 2CVF_B 1SZP_D ....
Probab=98.00 E-value=0.00019 Score=54.78 Aligned_cols=90 Identities=28% Similarity=0.368 Sum_probs=54.7
Q ss_pred ccEEEEEeCCCCcHHHHHHHHHhHHhhh----hcccceEEEEecCCcCHHHHHHHHHHHhCCCchh-------------H
Q 035585 47 VNIVGVYGMGGIGKTTLVKEFARQASEE----KLFDQVVFSEVSQTPDIKKIHGEIAEKLGLEFSE-------------E 109 (183)
Q Consensus 47 ~~~v~i~G~~G~GKTtL~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~-------------~ 109 (183)
..++=|+|++|+|||.|+.+++-...-. ..-..++|++.........+. +|++.+...... .
T Consensus 38 g~itEi~G~~gsGKTql~l~l~~~~~l~~~~~g~~~~vvyidTe~~f~~~Rl~-~i~~~~~~~~~~~l~~I~v~~~~~~~ 116 (256)
T PF08423_consen 38 GSITEIVGESGSGKTQLCLQLAVNVQLPEEIGGLGGKVVYIDTEGTFSPERLQ-QIAERFGLDPEEILDNIFVIRVFDLE 116 (256)
T ss_dssp TSEEEEEESTTSSHHHHHHHHHHHTTSGGCTTSSSSEEEEEESSSSS-HHHHH-HHHHHTTS-HHHHHHTEEEEE-SSHH
T ss_pred CcEEEEEEecccccchHHHHHHHHhhcccccccCCCceEEEeCCCCCCHHHHH-HHhhccccccchhhhceeeeecCCHH
Confidence 3678899999999999999887543221 113358999988877665543 455555432111 0
Q ss_pred HHHHHHHHHHHHHhcCCeEEEEEeCCCC
Q 035585 110 AESRRASRLYERLKKEKMILVILDNIWK 137 (183)
Q Consensus 110 ~~~~~~~~~~~~~~~~~~~llvlD~~~~ 137 (183)
.-...+..+...+.+.+--|||+|.+-.
T Consensus 117 ~l~~~L~~l~~~l~~~~ikLIVIDSIaa 144 (256)
T PF08423_consen 117 ELLELLEQLPKLLSESKIKLIVIDSIAA 144 (256)
T ss_dssp HHHHHHHHHHHHHHHSCEEEEEEETSSH
T ss_pred HHHHHHHHHHhhccccceEEEEecchHH
Confidence 1111223333444457788999998753
No 378
>PRK14267 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.00 E-value=3.8e-05 Score=58.38 Aligned_cols=27 Identities=30% Similarity=0.560 Sum_probs=23.5
Q ss_pred CccEEEEEeCCCCcHHHHHHHHHhHHh
Q 035585 46 NVNIVGVYGMGGIGKTTLVKEFARQAS 72 (183)
Q Consensus 46 ~~~~v~i~G~~G~GKTtL~~~~~~~~~ 72 (183)
+...++|.|++|+|||||++.+...+.
T Consensus 29 ~Ge~~~l~G~nGsGKSTLl~~l~G~~~ 55 (253)
T PRK14267 29 QNGVFALMGPSGCGKSTLLRTFNRLLE 55 (253)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhccCC
Confidence 457899999999999999999987654
No 379
>PRK14238 phosphate transporter ATP-binding protein; Provisional
Probab=98.00 E-value=4.2e-05 Score=58.86 Aligned_cols=28 Identities=25% Similarity=0.470 Sum_probs=24.2
Q ss_pred CCccEEEEEeCCCCcHHHHHHHHHhHHh
Q 035585 45 VNVNIVGVYGMGGIGKTTLVKEFARQAS 72 (183)
Q Consensus 45 ~~~~~v~i~G~~G~GKTtL~~~~~~~~~ 72 (183)
.+...++|+|++|+|||||++.+...+.
T Consensus 48 ~~Ge~~~I~G~nGsGKSTLl~~i~Gl~~ 75 (271)
T PRK14238 48 HENEVTAIIGPSGCGKSTYIKTLNRMVE 75 (271)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHhhcc
Confidence 3457899999999999999999987654
No 380
>TIGR03878 thermo_KaiC_2 KaiC domain protein, AF_0795 family. This KaiC domain-containing protein family occurs sporadically across a broad taxonomic range (Euryarchaeota, Aquificae, Dictyoglomi, Epsilonproteobacteria, and Firmicutes), but exclusively in thermophiles.
Probab=98.00 E-value=0.00011 Score=56.25 Aligned_cols=40 Identities=23% Similarity=0.460 Sum_probs=31.4
Q ss_pred CccEEEEEeCCCCcHHHHHHHHHhHHhhhhcccceEEEEecC
Q 035585 46 NVNIVGVYGMGGIGKTTLVKEFARQASEEKLFDQVVFSEVSQ 87 (183)
Q Consensus 46 ~~~~v~i~G~~G~GKTtL~~~~~~~~~~~~~~~~~~~~~~~~ 87 (183)
+..++.|+|++|+|||+|+.+++.....+ -..++|+....
T Consensus 35 ~gs~~lI~G~pGtGKT~l~~qf~~~~a~~--Ge~vlyis~Ee 74 (259)
T TIGR03878 35 AYSVINITGVSDTGKSLMVEQFAVTQASR--GNPVLFVTVES 74 (259)
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHHHhC--CCcEEEEEecC
Confidence 45689999999999999999987765443 34677877764
No 381
>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=97.99 E-value=2.3e-05 Score=53.99 Aligned_cols=41 Identities=29% Similarity=0.323 Sum_probs=31.0
Q ss_pred EEEEeCCCCcHHHHHHHHHhHHhhhhcccceEEEEecCCcCHHHHH
Q 035585 50 VGVYGMGGIGKTTLVKEFARQASEEKLFDQVVFSEVSQTPDIKKIH 95 (183)
Q Consensus 50 v~i~G~~G~GKTtL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 95 (183)
|.|+|++|+|||+|++.+++.+.. .+..++++...+..++.
T Consensus 2 vlL~G~~G~GKt~l~~~la~~~~~-----~~~~i~~~~~~~~~dl~ 42 (139)
T PF07728_consen 2 VLLVGPPGTGKTTLARELAALLGR-----PVIRINCSSDTTEEDLI 42 (139)
T ss_dssp EEEEESSSSSHHHHHHHHHHHHTC-----EEEEEE-TTTSTHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHhhc-----ceEEEEeccccccccce
Confidence 789999999999999999998732 34556777776665544
No 382
>PRK14253 phosphate ABC transporter ATP-binding protein; Provisional
Probab=97.99 E-value=4.3e-05 Score=57.98 Aligned_cols=27 Identities=26% Similarity=0.471 Sum_probs=23.4
Q ss_pred CccEEEEEeCCCCcHHHHHHHHHhHHh
Q 035585 46 NVNIVGVYGMGGIGKTTLVKEFARQAS 72 (183)
Q Consensus 46 ~~~~v~i~G~~G~GKTtL~~~~~~~~~ 72 (183)
+..+++|.|++|+|||||++.+.....
T Consensus 28 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~~ 54 (249)
T PRK14253 28 ARQVTALIGPSGCGKSTLLRCLNRMND 54 (249)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhcc
Confidence 457899999999999999999987654
No 383
>COG4555 NatA ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism]
Probab=97.99 E-value=6.3e-05 Score=54.88 Aligned_cols=31 Identities=32% Similarity=0.448 Sum_probs=26.4
Q ss_pred cCCccEEEEEeCCCCcHHHHHHHHHhHHhhh
Q 035585 44 DVNVNIVGVYGMGGIGKTTLVKEFARQASEE 74 (183)
Q Consensus 44 ~~~~~~v~i~G~~G~GKTtL~~~~~~~~~~~ 74 (183)
.....+++|.|++|.||||+.+.++..+...
T Consensus 25 ae~Gei~GlLG~NGAGKTT~LRmiatlL~P~ 55 (245)
T COG4555 25 AEEGEITGLLGENGAGKTTLLRMIATLLIPD 55 (245)
T ss_pred eccceEEEEEcCCCCCchhHHHHHHHhccCC
Confidence 3456899999999999999999999877653
No 384
>KOG0735 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=97.99 E-value=3.2e-05 Score=65.62 Aligned_cols=78 Identities=19% Similarity=0.183 Sum_probs=50.7
Q ss_pred CCccEEEEEeCCCCcHHHHHHHHHhHHhhhhcccceEEEEecCCcCHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHHhc
Q 035585 45 VNVNIVGVYGMGGIGKTTLVKEFARQASEEKLFDQVVFSEVSQTPDIKKIHGEIAEKLGLEFSEEAESRRASRLYERLKK 124 (183)
Q Consensus 45 ~~~~~v~i~G~~G~GKTtL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~ 124 (183)
.+.+.+.|.|+.|+|||+|++.++..+.. +..-++-+++|+...... +..+ ......++.....
T Consensus 429 ~~~~~Ill~G~~GsGKT~L~kal~~~~~k-~~~~hv~~v~Cs~l~~~~--~e~i-------------Qk~l~~vfse~~~ 492 (952)
T KOG0735|consen 429 FRHGNILLNGPKGSGKTNLVKALFDYYSK-DLIAHVEIVSCSTLDGSS--LEKI-------------QKFLNNVFSEALW 492 (952)
T ss_pred cccccEEEeCCCCCCHhHHHHHHHHHhcc-ccceEEEEEechhccchh--HHHH-------------HHHHHHHHHHHHh
Confidence 35578999999999999999999999884 344456666666432211 1111 1122333333444
Q ss_pred CCeEEEEEeCCCCc
Q 035585 125 EKMILVILDNIWKY 138 (183)
Q Consensus 125 ~~~~llvlD~~~~~ 138 (183)
..+-++||||+|-+
T Consensus 493 ~~PSiIvLDdld~l 506 (952)
T KOG0735|consen 493 YAPSIIVLDDLDCL 506 (952)
T ss_pred hCCcEEEEcchhhh
Confidence 78999999998743
No 385
>TIGR03410 urea_trans_UrtE urea ABC transporter, ATP-binding protein UrtE. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=97.99 E-value=2.3e-05 Score=58.75 Aligned_cols=27 Identities=33% Similarity=0.489 Sum_probs=23.4
Q ss_pred CccEEEEEeCCCCcHHHHHHHHHhHHh
Q 035585 46 NVNIVGVYGMGGIGKTTLVKEFARQAS 72 (183)
Q Consensus 46 ~~~~v~i~G~~G~GKTtL~~~~~~~~~ 72 (183)
+...++|+|++|+|||||++.+...+.
T Consensus 25 ~Ge~~~l~G~nGsGKSTLl~~l~G~~~ 51 (230)
T TIGR03410 25 KGEVTCVLGRNGVGKTTLLKTLMGLLP 51 (230)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 457899999999999999999986553
No 386
>PRK14262 phosphate ABC transporter ATP-binding protein; Provisional
Probab=97.98 E-value=4.9e-05 Score=57.71 Aligned_cols=26 Identities=35% Similarity=0.563 Sum_probs=22.7
Q ss_pred CccEEEEEeCCCCcHHHHHHHHHhHH
Q 035585 46 NVNIVGVYGMGGIGKTTLVKEFARQA 71 (183)
Q Consensus 46 ~~~~v~i~G~~G~GKTtL~~~~~~~~ 71 (183)
+...++|.|++|+|||||++.+....
T Consensus 28 ~Ge~~~i~G~nGsGKSTLl~~i~Gl~ 53 (250)
T PRK14262 28 KNQITAIIGPSGCGKTTLLRSINRMN 53 (250)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhccc
Confidence 45789999999999999999998644
No 387
>TIGR02857 CydD thiol reductant ABC exporter, CydD subunit. Unfortunately, the gene symbol nomenclature adopted based on this operon in B. subtilis assigns cydC to the third gene in the operon where this gene is actually homologous to the E. coli cydD gene. We have chosen to name all homologs in this family in accordance with the precedence of publication of the E. coli name, CydD
Probab=97.98 E-value=3.7e-05 Score=64.62 Aligned_cols=28 Identities=25% Similarity=0.274 Sum_probs=23.8
Q ss_pred CCccEEEEEeCCCCcHHHHHHHHHhHHh
Q 035585 45 VNVNIVGVYGMGGIGKTTLVKEFARQAS 72 (183)
Q Consensus 45 ~~~~~v~i~G~~G~GKTtL~~~~~~~~~ 72 (183)
.+...++|+|++|+|||||++.+...+.
T Consensus 346 ~~G~~~~ivG~sGsGKSTL~~ll~g~~~ 373 (529)
T TIGR02857 346 PPGERVALVGPSGAGKSTLLNLLLGFVD 373 (529)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence 3557899999999999999999986554
No 388
>PRK13641 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=97.98 E-value=3.3e-05 Score=59.98 Aligned_cols=27 Identities=30% Similarity=0.468 Sum_probs=23.2
Q ss_pred CccEEEEEeCCCCcHHHHHHHHHhHHh
Q 035585 46 NVNIVGVYGMGGIGKTTLVKEFARQAS 72 (183)
Q Consensus 46 ~~~~v~i~G~~G~GKTtL~~~~~~~~~ 72 (183)
+...++|.|++|+|||||++.++..+.
T Consensus 32 ~Ge~~~iiG~NGaGKSTLl~~l~Gl~~ 58 (287)
T PRK13641 32 EGSFVALVGHTGSGKSTLMQHFNALLK 58 (287)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence 447899999999999999999986543
No 389
>PRK13650 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=97.98 E-value=1.9e-05 Score=61.10 Aligned_cols=27 Identities=22% Similarity=0.304 Sum_probs=23.5
Q ss_pred CccEEEEEeCCCCcHHHHHHHHHhHHh
Q 035585 46 NVNIVGVYGMGGIGKTTLVKEFARQAS 72 (183)
Q Consensus 46 ~~~~v~i~G~~G~GKTtL~~~~~~~~~ 72 (183)
+..+++|+|++|+|||||++.++..+.
T Consensus 32 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~~ 58 (279)
T PRK13650 32 QGEWLSIIGHNGSGKSTTVRLIDGLLE 58 (279)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence 457899999999999999999987653
No 390
>PRK14273 phosphate ABC transporter ATP-binding protein; Provisional
Probab=97.98 E-value=3.4e-05 Score=58.75 Aligned_cols=27 Identities=26% Similarity=0.507 Sum_probs=23.6
Q ss_pred CccEEEEEeCCCCcHHHHHHHHHhHHh
Q 035585 46 NVNIVGVYGMGGIGKTTLVKEFARQAS 72 (183)
Q Consensus 46 ~~~~v~i~G~~G~GKTtL~~~~~~~~~ 72 (183)
+...++|.|++|+|||||++.+...+.
T Consensus 32 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~~ 58 (254)
T PRK14273 32 KNSITALIGPSGCGKSTFLRTLNRMND 58 (254)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcccc
Confidence 457899999999999999999987654
No 391
>PRK14240 phosphate transporter ATP-binding protein; Provisional
Probab=97.98 E-value=3.8e-05 Score=58.31 Aligned_cols=26 Identities=23% Similarity=0.507 Sum_probs=22.7
Q ss_pred CccEEEEEeCCCCcHHHHHHHHHhHH
Q 035585 46 NVNIVGVYGMGGIGKTTLVKEFARQA 71 (183)
Q Consensus 46 ~~~~v~i~G~~G~GKTtL~~~~~~~~ 71 (183)
+...++|.|++|+|||||++.+....
T Consensus 28 ~Ge~~~i~G~nGsGKSTLl~~i~G~~ 53 (250)
T PRK14240 28 ENQVTALIGPSGCGKSTFLRTLNRMN 53 (250)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhccc
Confidence 45789999999999999999998643
No 392
>PF02463 SMC_N: RecF/RecN/SMC N terminal domain; InterPro: IPR003395 This domain is found at the N terminus of structural maintenance of chromosomes (SMC) proteins, which function together with other proteins in a range of chromosomal transactions, including chromosome condensation, sister-chromatid cohesion, recombination, DNA repair and epigenetic silencing of gene expression []. The domain is also found in RecF and RecN proteins, which are involved in DNA metabolism and recombination.; PDB: 3HTK_A 1W1W_C 2WD5_A 3L51_A 1XEW_Y 3KTA_B 3NWC_B 1XEX_A 1GXL_C 1GXK_A ....
Probab=97.97 E-value=2.6e-05 Score=57.97 Aligned_cols=48 Identities=13% Similarity=0.194 Sum_probs=28.4
Q ss_pred CCeEEEEEeCCCCccc---ccccCcCCCCCCCCcEEEEEecChHHHhhcCC
Q 035585 125 EKMILVILDNIWKYLD---LETVGIPFGDDHRGCKLLLTARDCNVLLNMSL 172 (183)
Q Consensus 125 ~~~~llvlD~~~~~~~---~~~l~~~~~~~~~~~~iiitsr~~~~~~~~~~ 172 (183)
...-+++|||++...+ ...+...+......+.+|+||++..+......
T Consensus 157 ~~~p~~ilDEvd~~LD~~~~~~l~~~l~~~~~~~Q~ii~Th~~~~~~~a~~ 207 (220)
T PF02463_consen 157 KPSPFLILDEVDAALDEQNRKRLADLLKELSKQSQFIITTHNPEMFEDADK 207 (220)
T ss_dssp S--SEEEEESTTTTS-HHHHHHHHHHHHHHTTTSEEEEE-S-HHHHTT-SE
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 4566899999985533 22333333344456899999999999886543
No 393
>PRK14261 phosphate ABC transporter ATP-binding protein; Provisional
Probab=97.97 E-value=5.7e-05 Score=57.47 Aligned_cols=25 Identities=32% Similarity=0.579 Sum_probs=22.1
Q ss_pred CccEEEEEeCCCCcHHHHHHHHHhH
Q 035585 46 NVNIVGVYGMGGIGKTTLVKEFARQ 70 (183)
Q Consensus 46 ~~~~v~i~G~~G~GKTtL~~~~~~~ 70 (183)
+...++|.|++|+|||||++.+...
T Consensus 31 ~Ge~~~i~G~nGsGKSTLl~~l~Gl 55 (253)
T PRK14261 31 KNRVTALIGPSGCGKSTLLRCFNRM 55 (253)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhcc
Confidence 4568999999999999999999854
No 394
>PRK08769 DNA polymerase III subunit delta'; Validated
Probab=97.97 E-value=9.2e-05 Score=58.22 Aligned_cols=132 Identities=14% Similarity=0.131 Sum_probs=68.9
Q ss_pred HHHHHHHHHhccCCc-cEEEEEeCCCCcHHHHHHHHHhHHhhhhcccc-----eEEEEecCCcCHHHHHHHHHHHhCCCc
Q 035585 33 STLKSIQDALTDVNV-NIVGVYGMGGIGKTTLVKEFARQASEEKLFDQ-----VVFSEVSQTPDIKKIHGEIAEKLGLEF 106 (183)
Q Consensus 33 ~~l~~l~~~l~~~~~-~~v~i~G~~G~GKTtL~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~i~~~l~~~~ 106 (183)
...+.|...+.+++. +.++++|+.|+||+++|..++..+-....... +-++...+.+++..+.. .-+.-+...
T Consensus 11 ~~~~~l~~~~~~~rl~HA~Lf~Gp~G~GK~~lA~~lA~~LlC~~~~~~~~c~~c~~~~~g~HPD~~~i~~-~p~~~~~k~ 89 (319)
T PRK08769 11 RAYDQTVAALDAGRLGHGLLICGPEGLGKRAVALALAEHVLASGPDPAAAQRTRQLIAAGTHPDLQLVSF-IPNRTGDKL 89 (319)
T ss_pred HHHHHHHHHHHcCCcceeEeeECCCCCCHHHHHHHHHHHHhCCCCCCCCcchHHHHHhcCCCCCEEEEec-CCCcccccc
Confidence 445666776665544 46999999999999999999887643311100 00000000000000000 000000000
Q ss_pred hhHHHHHHHHHHHHHHh----cCCeEEEEEeCCCCcc--cccccCcCCCCCCCCcEEEEEecChH
Q 035585 107 SEEAESRRASRLYERLK----KEKMILVILDNIWKYL--DLETVGIPFGDDHRGCKLLLTARDCN 165 (183)
Q Consensus 107 ~~~~~~~~~~~~~~~~~----~~~~~llvlD~~~~~~--~~~~l~~~~~~~~~~~~iiitsr~~~ 165 (183)
......+.++.+.+.+. .++..++|||+++.+. ..+.++..+.....++.+|++|++.+
T Consensus 90 ~~~I~idqIR~l~~~~~~~p~~g~~kV~iI~~ae~m~~~AaNaLLKtLEEPp~~~~fiL~~~~~~ 154 (319)
T PRK08769 90 RTEIVIEQVREISQKLALTPQYGIAQVVIVDPADAINRAACNALLKTLEEPSPGRYLWLISAQPA 154 (319)
T ss_pred cccccHHHHHHHHHHHhhCcccCCcEEEEeccHhhhCHHHHHHHHHHhhCCCCCCeEEEEECChh
Confidence 00011223333433332 2567899999999774 46666676666667888888887544
No 395
>PF13086 AAA_11: AAA domain; PDB: 2XZL_A 2XZO_A 2WJY_A 2WJV_A 2XZP_A 2GK6_A 2GK7_A 2GJK_A.
Probab=97.97 E-value=2.9e-05 Score=57.71 Aligned_cols=66 Identities=21% Similarity=0.228 Sum_probs=40.1
Q ss_pred HHHHHHHHHhccCCccEEEEEeCCCCcHHHHHHHHHhHHh-----hhhcccceEEEEecCCcCHHHHHHHHHH
Q 035585 33 STLKSIQDALTDVNVNIVGVYGMGGIGKTTLVKEFARQAS-----EEKLFDQVVFSEVSQTPDIKKIHGEIAE 100 (183)
Q Consensus 33 ~~l~~l~~~l~~~~~~~v~i~G~~G~GKTtL~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 100 (183)
.+.+.+..++.+. .+.+|+||+|+|||+++..+...+- ........+.+...++.+...+...+..
T Consensus 5 ~Q~~Ai~~~~~~~--~~~~i~GpPGTGKT~~l~~~i~~~~~~~~~~~~~~~~~il~~~~sN~avd~~~~~l~~ 75 (236)
T PF13086_consen 5 SQREAIQSALSSN--GITLIQGPPGTGKTTTLASIIAQLLQRFKSRSADRGKKILVVSPSNAAVDNILERLKK 75 (236)
T ss_dssp HHHHHHHHHCTSS--E-EEEE-STTSSHHHHHHHHHHHH-------HCCCSS-EEEEESSHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHcCC--CCEEEECCCCCChHHHHHHHHHHhccchhhhhhhccccceeecCCchhHHHHHHHHHh
Confidence 3445555555433 2789999999999988888877762 1112334555566666666666666655
No 396
>PRK15429 formate hydrogenlyase transcriptional activator FhlA; Provisional
Probab=97.97 E-value=2.1e-05 Score=68.13 Aligned_cols=63 Identities=13% Similarity=0.192 Sum_probs=45.9
Q ss_pred CcccccchHHHHHHHHHHhc--cCCccEEEEEeCCCCcHHHHHHHHHhHHhhhhcccceEEEEecCC
Q 035585 24 GYEAFKSRLSTLKSIQDALT--DVNVNIVGVYGMGGIGKTTLVKEFARQASEEKLFDQVVFSEVSQT 88 (183)
Q Consensus 24 ~~~~~~gR~~~l~~l~~~l~--~~~~~~v~i~G~~G~GKTtL~~~~~~~~~~~~~~~~~~~~~~~~~ 88 (183)
....++|+...+..+.+.+. ......|+|+|++|+|||++|+.++..-... ....+.++|...
T Consensus 374 ~~~~liG~S~~~~~~~~~~~~~a~~~~pVLI~GE~GTGK~~lA~~ih~~s~r~--~~~~v~i~c~~~ 438 (686)
T PRK15429 374 EFGEIIGRSEAMYSVLKQVEMVAQSDSTVLILGETGTGKELIARAIHNLSGRN--NRRMVKMNCAAM 438 (686)
T ss_pred cccceeecCHHHHHHHHHHHHHhCCCCCEEEECCCCcCHHHHHHHHHHhcCCC--CCCeEEEecccC
Confidence 34468899888888876655 3444689999999999999999998764322 334566777654
No 397
>PRK11174 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Probab=97.97 E-value=2.7e-05 Score=66.19 Aligned_cols=27 Identities=22% Similarity=0.298 Sum_probs=23.8
Q ss_pred CCccEEEEEeCCCCcHHHHHHHHHhHH
Q 035585 45 VNVNIVGVYGMGGIGKTTLVKEFARQA 71 (183)
Q Consensus 45 ~~~~~v~i~G~~G~GKTtL~~~~~~~~ 71 (183)
.+...++|+|++|+|||||++.+...+
T Consensus 374 ~~G~~vaIvG~SGsGKSTL~~lL~g~~ 400 (588)
T PRK11174 374 PAGQRIALVGPSGAGKTSLLNALLGFL 400 (588)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 355789999999999999999998766
No 398
>PRK14251 phosphate ABC transporter ATP-binding protein; Provisional
Probab=97.97 E-value=3.9e-05 Score=58.30 Aligned_cols=27 Identities=22% Similarity=0.464 Sum_probs=23.5
Q ss_pred CccEEEEEeCCCCcHHHHHHHHHhHHh
Q 035585 46 NVNIVGVYGMGGIGKTTLVKEFARQAS 72 (183)
Q Consensus 46 ~~~~v~i~G~~G~GKTtL~~~~~~~~~ 72 (183)
+...++|+|++|+|||||++.+.....
T Consensus 29 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~~ 55 (251)
T PRK14251 29 EKELTALIGPSGCGKSTFLRCLNRMND 55 (251)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhhccc
Confidence 447899999999999999999987653
No 399
>cd03248 ABCC_TAP TAP, the Transporter Associated with Antigen Processing; TAP is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules. Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes.
Probab=97.97 E-value=4.8e-05 Score=56.83 Aligned_cols=26 Identities=23% Similarity=0.305 Sum_probs=23.1
Q ss_pred CccEEEEEeCCCCcHHHHHHHHHhHH
Q 035585 46 NVNIVGVYGMGGIGKTTLVKEFARQA 71 (183)
Q Consensus 46 ~~~~v~i~G~~G~GKTtL~~~~~~~~ 71 (183)
+...++|.|++|+|||||++.++...
T Consensus 39 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 64 (226)
T cd03248 39 PGEVTALVGPSGSGKSTVVALLENFY 64 (226)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCc
Confidence 45789999999999999999998665
No 400
>PRK13636 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=97.97 E-value=1.5e-05 Score=61.66 Aligned_cols=26 Identities=23% Similarity=0.415 Sum_probs=23.0
Q ss_pred CccEEEEEeCCCCcHHHHHHHHHhHH
Q 035585 46 NVNIVGVYGMGGIGKTTLVKEFARQA 71 (183)
Q Consensus 46 ~~~~v~i~G~~G~GKTtL~~~~~~~~ 71 (183)
+...++|.|++|+|||||++.+...+
T Consensus 31 ~Ge~~~i~G~nGaGKSTLl~~i~Gl~ 56 (283)
T PRK13636 31 KGEVTAILGGNGAGKSTLFQNLNGIL 56 (283)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 45789999999999999999998654
No 401
>PRK14255 phosphate ABC transporter ATP-binding protein; Provisional
Probab=97.97 E-value=4.1e-05 Score=58.20 Aligned_cols=25 Identities=28% Similarity=0.517 Sum_probs=22.2
Q ss_pred CccEEEEEeCCCCcHHHHHHHHHhH
Q 035585 46 NVNIVGVYGMGGIGKTTLVKEFARQ 70 (183)
Q Consensus 46 ~~~~v~i~G~~G~GKTtL~~~~~~~ 70 (183)
+...++|+|++|+|||||++.+...
T Consensus 30 ~Ge~~~l~G~nGsGKSTLl~~l~Gl 54 (252)
T PRK14255 30 QNEITALIGPSGCGKSTYLRTLNRM 54 (252)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcc
Confidence 4568999999999999999999764
No 402
>PRK14242 phosphate transporter ATP-binding protein; Provisional
Probab=97.97 E-value=4.2e-05 Score=58.17 Aligned_cols=26 Identities=23% Similarity=0.468 Sum_probs=22.7
Q ss_pred CccEEEEEeCCCCcHHHHHHHHHhHH
Q 035585 46 NVNIVGVYGMGGIGKTTLVKEFARQA 71 (183)
Q Consensus 46 ~~~~v~i~G~~G~GKTtL~~~~~~~~ 71 (183)
+...++|.|++|+|||||++.+....
T Consensus 31 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 56 (253)
T PRK14242 31 QNQVTALIGPSGCGKSTFLRCLNRMN 56 (253)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhc
Confidence 45789999999999999999998653
No 403
>cd03251 ABCC_MsbA MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.97 E-value=4.9e-05 Score=57.08 Aligned_cols=27 Identities=33% Similarity=0.391 Sum_probs=23.2
Q ss_pred CccEEEEEeCCCCcHHHHHHHHHhHHh
Q 035585 46 NVNIVGVYGMGGIGKTTLVKEFARQAS 72 (183)
Q Consensus 46 ~~~~v~i~G~~G~GKTtL~~~~~~~~~ 72 (183)
+..+++|.|++|+|||||++.++....
T Consensus 27 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~~ 53 (234)
T cd03251 27 AGETVALVGPSGSGKSTLVNLIPRFYD 53 (234)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcccc
Confidence 457899999999999999999986553
No 404
>PRK09493 glnQ glutamine ABC transporter ATP-binding protein; Reviewed
Probab=97.96 E-value=1.7e-05 Score=59.80 Aligned_cols=27 Identities=26% Similarity=0.428 Sum_probs=23.3
Q ss_pred CccEEEEEeCCCCcHHHHHHHHHhHHh
Q 035585 46 NVNIVGVYGMGGIGKTTLVKEFARQAS 72 (183)
Q Consensus 46 ~~~~v~i~G~~G~GKTtL~~~~~~~~~ 72 (183)
+...++|.|++|+|||||++.+...+.
T Consensus 26 ~Ge~~~l~G~nGsGKSTLl~~l~G~~~ 52 (240)
T PRK09493 26 QGEVVVIIGPSGSGKSTLLRCINKLEE 52 (240)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCCC
Confidence 457899999999999999999986543
No 405
>TIGR00968 3a0106s01 sulfate ABC transporter, ATP-binding protein.
Probab=97.96 E-value=1.1e-05 Score=60.93 Aligned_cols=27 Identities=30% Similarity=0.453 Sum_probs=23.4
Q ss_pred CccEEEEEeCCCCcHHHHHHHHHhHHh
Q 035585 46 NVNIVGVYGMGGIGKTTLVKEFARQAS 72 (183)
Q Consensus 46 ~~~~v~i~G~~G~GKTtL~~~~~~~~~ 72 (183)
+..+++|.|++|+|||||++.+...+.
T Consensus 25 ~Ge~~~l~G~nGsGKSTLl~~i~G~~~ 51 (237)
T TIGR00968 25 TGSLVALLGPSGSGKSTLLRIIAGLEQ 51 (237)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence 457899999999999999999987553
No 406
>KOG0728 consensus 26S proteasome regulatory complex, ATPase RPT6 [Posttranslational modification, protein turnover, chaperones]
Probab=97.96 E-value=0.0001 Score=55.62 Aligned_cols=73 Identities=25% Similarity=0.346 Sum_probs=51.4
Q ss_pred CccEEEEEeCCCCcHHHHHHHHHhHHhhhhcccceEEEEecCCcCHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHHhcC
Q 035585 46 NVNIVGVYGMGGIGKTTLVKEFARQASEEKLFDQVVFSEVSQTPDIKKIHGEIAEKLGLEFSEEAESRRASRLYERLKKE 125 (183)
Q Consensus 46 ~~~~v~i~G~~G~GKTtL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~ 125 (183)
++.-++++||+|.|||.||+.++..- .+.|+.++... +....+ + ....++++++-..++.
T Consensus 180 QPKGvlLygppgtGktLlaraVahht-------~c~firvsgse----lvqk~i---g------egsrmvrelfvmareh 239 (404)
T KOG0728|consen 180 QPKGVLLYGPPGTGKTLLARAVAHHT-------DCTFIRVSGSE----LVQKYI---G------EGSRMVRELFVMAREH 239 (404)
T ss_pred CCcceEEecCCCCchhHHHHHHHhhc-------ceEEEEechHH----HHHHHh---h------hhHHHHHHHHHHHHhc
Confidence 55679999999999999999988742 34466666532 222222 1 1345567777777778
Q ss_pred CeEEEEEeCCCCc
Q 035585 126 KMILVILDNIWKY 138 (183)
Q Consensus 126 ~~~llvlD~~~~~ 138 (183)
-+.+++.|++|+.
T Consensus 240 apsiifmdeidsi 252 (404)
T KOG0728|consen 240 APSIIFMDEIDSI 252 (404)
T ss_pred CCceEeeeccccc
Confidence 8999999999865
No 407
>TIGR00954 3a01203 Peroxysomal Fatty Acyl CoA Transporter (FAT) Family protei.
Probab=97.96 E-value=4.5e-05 Score=65.75 Aligned_cols=27 Identities=22% Similarity=0.302 Sum_probs=23.7
Q ss_pred CccEEEEEeCCCCcHHHHHHHHHhHHh
Q 035585 46 NVNIVGVYGMGGIGKTTLVKEFARQAS 72 (183)
Q Consensus 46 ~~~~v~i~G~~G~GKTtL~~~~~~~~~ 72 (183)
+...++|+|++|+|||||++.+...+.
T Consensus 477 ~Ge~~~IvG~nGsGKSTLl~lL~Gl~~ 503 (659)
T TIGR00954 477 SGNHLLICGPNGCGKSSLFRILGELWP 503 (659)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 456899999999999999999988764
No 408
>PRK14272 phosphate ABC transporter ATP-binding protein; Provisional
Probab=97.96 E-value=4.4e-05 Score=58.00 Aligned_cols=27 Identities=26% Similarity=0.439 Sum_probs=23.5
Q ss_pred CccEEEEEeCCCCcHHHHHHHHHhHHh
Q 035585 46 NVNIVGVYGMGGIGKTTLVKEFARQAS 72 (183)
Q Consensus 46 ~~~~v~i~G~~G~GKTtL~~~~~~~~~ 72 (183)
+...++|.|++|+|||||++.+...+.
T Consensus 29 ~Ge~~~i~G~nGsGKSTLl~~i~G~~~ 55 (252)
T PRK14272 29 RGTVNALIGPSGCGKTTFLRAINRMHD 55 (252)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhccCC
Confidence 457899999999999999999987653
No 409
>PRK13545 tagH teichoic acids export protein ATP-binding subunit; Provisional
Probab=97.95 E-value=4.4e-05 Score=63.55 Aligned_cols=28 Identities=36% Similarity=0.523 Sum_probs=24.3
Q ss_pred CccEEEEEeCCCCcHHHHHHHHHhHHhh
Q 035585 46 NVNIVGVYGMGGIGKTTLVKEFARQASE 73 (183)
Q Consensus 46 ~~~~v~i~G~~G~GKTtL~~~~~~~~~~ 73 (183)
+...++|.|++|+|||||++.++.....
T Consensus 49 ~GEivgIiGpNGSGKSTLLkiLaGLl~P 76 (549)
T PRK13545 49 EGEIVGIIGLNGSGKSTLSNLIAGVTMP 76 (549)
T ss_pred CCCEEEEEcCCCCCHHHHHHHHhCCCCC
Confidence 4578999999999999999999887643
No 410
>TIGR00708 cobA cob(I)alamin adenosyltransferase. Alternate name: corrinoid adenosyltransferase.
Probab=97.95 E-value=0.00012 Score=52.46 Aligned_cols=114 Identities=24% Similarity=0.228 Sum_probs=67.0
Q ss_pred ccEEEEEeCCCCcHHHHHHHHHhHHhhhhcccceEEEEecCC---cCHHHHHHHHHHHh-----CCCc-----hhHHH--
Q 035585 47 VNIVGVYGMGGIGKTTLVKEFARQASEEKLFDQVVFSEVSQT---PDIKKIHGEIAEKL-----GLEF-----SEEAE-- 111 (183)
Q Consensus 47 ~~~v~i~G~~G~GKTtL~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~i~~~l-----~~~~-----~~~~~-- 111 (183)
...+-|++.+|.||||.|..++.+.... -..+.++++-.. ......+..+ .+ +... .....
T Consensus 5 ~Gli~v~~g~GkGKtt~a~g~a~ra~~~--g~~v~ivQFlKg~~~~GE~~~l~~~--~~~~~~~g~g~~~~~~~~~~~~~ 80 (173)
T TIGR00708 5 RGIIIVHTGNGKGKTTAAFGMALRALGH--GKKVGVIQFIKGAWPNGERAAFEPH--GVEFQVMGTGFTWETQNREADTA 80 (173)
T ss_pred ccEEEEECCCCCChHHHHHHHHHHHHHC--CCeEEEEEEecCCcccChHHHHHhc--CcEEEECCCCCeecCCCcHHHHH
Confidence 4688999999999999999988877664 223545544433 2323333332 11 1110 11111
Q ss_pred --HHHHHHHHHHHhcCCeEEEEEeCCCCc-----ccccccCcCCCCCCCCcEEEEEecCh
Q 035585 112 --SRRASRLYERLKKEKMILVILDNIWKY-----LDLETVGIPFGDDHRGCKLLLTARDC 164 (183)
Q Consensus 112 --~~~~~~~~~~~~~~~~~llvlD~~~~~-----~~~~~l~~~~~~~~~~~~iiitsr~~ 164 (183)
........+.+..+.--+|||||+-.. .+.+.+...+....++..+|+|.|+.
T Consensus 81 ~~~~~~~~a~~~l~~~~~DlvVLDEi~~A~~~gli~~~~v~~lL~~rp~~~evVlTGR~~ 140 (173)
T TIGR00708 81 IAKAAWQHAKEMLADPELDLVLLDELTYALKYGYLDVEEVVEALQERPGHQHVIITGRGC 140 (173)
T ss_pred HHHHHHHHHHHHHhcCCCCEEEehhhHHHHHCCCcCHHHHHHHHHhCCCCCEEEEECCCC
Confidence 112233344444467789999998633 23444555556667788999999965
No 411
>PRK14271 phosphate ABC transporter ATP-binding protein; Provisional
Probab=97.95 E-value=3.8e-05 Score=59.26 Aligned_cols=27 Identities=26% Similarity=0.460 Sum_probs=23.6
Q ss_pred CccEEEEEeCCCCcHHHHHHHHHhHHh
Q 035585 46 NVNIVGVYGMGGIGKTTLVKEFARQAS 72 (183)
Q Consensus 46 ~~~~v~i~G~~G~GKTtL~~~~~~~~~ 72 (183)
+...++|.|++|+|||||++.+.....
T Consensus 46 ~Ge~~~I~G~nGsGKSTLl~~l~Gl~~ 72 (276)
T PRK14271 46 ARAVTSLMGPTGSGKTTFLRTLNRMND 72 (276)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhccCC
Confidence 457899999999999999999987654
No 412
>TIGR00554 panK_bact pantothenate kinase, bacterial type. Shown to be a homodimer in E. coli. This enzyme catalyzes the rate-limiting step in the biosynthesis of coenzyme A. It is very well conserved from E. coli to B. subtilis, but differs considerably from known eukaryotic forms, described in a separate model.
Probab=97.95 E-value=8.8e-05 Score=57.55 Aligned_cols=28 Identities=21% Similarity=0.233 Sum_probs=24.2
Q ss_pred CCccEEEEEeCCCCcHHHHHHHHHhHHh
Q 035585 45 VNVNIVGVYGMGGIGKTTLVKEFARQAS 72 (183)
Q Consensus 45 ~~~~~v~i~G~~G~GKTtL~~~~~~~~~ 72 (183)
..+.+++|.|++|+||||+++.+...+.
T Consensus 60 ~~p~IIGIaG~~GSGKSTlar~L~~ll~ 87 (290)
T TIGR00554 60 KIPYIISIAGSVAVGKSTTARILQALLS 87 (290)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHh
Confidence 4567899999999999999998877665
No 413
>COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]
Probab=97.95 E-value=1.5e-05 Score=66.07 Aligned_cols=50 Identities=24% Similarity=0.206 Sum_probs=32.7
Q ss_pred cCCeEEEEEeCCCCcccc---cccCcCCCC--CCCCcEEEEEecChHHHhhcCCC
Q 035585 124 KEKMILVILDNIWKYLDL---ETVGIPFGD--DHRGCKLLLTARDCNVLLNMSLC 173 (183)
Q Consensus 124 ~~~~~llvlD~~~~~~~~---~~l~~~~~~--~~~~~~iiitsr~~~~~~~~~~~ 173 (183)
..++.+||.||.-+..+. ......+.+ ..-|...++.|||-.+...+...
T Consensus 445 a~~P~lli~DEp~SaLDvsvqa~VlnLl~~lq~e~g~t~lfISHDl~vV~~i~dr 499 (539)
T COG1123 445 ALEPKLLILDEPVSALDVSVQAQVLNLLKDLQEELGLTYLFISHDLAVVRYIADR 499 (539)
T ss_pred hcCCCEEEecCCccccCHHHHHHHHHHHHHHHHHhCCEEEEEeCCHHHHHhhCce
Confidence 377889999998766441 111122211 22367899999999999876654
No 414
>PRK11608 pspF phage shock protein operon transcriptional activator; Provisional
Probab=97.95 E-value=1.5e-05 Score=62.97 Aligned_cols=62 Identities=10% Similarity=0.088 Sum_probs=43.7
Q ss_pred cccccchHHHHHHHHHHhc--cCCccEEEEEeCCCCcHHHHHHHHHhHHhhhhcccceEEEEecCC
Q 035585 25 YEAFKSRLSTLKSIQDALT--DVNVNIVGVYGMGGIGKTTLVKEFARQASEEKLFDQVVFSEVSQT 88 (183)
Q Consensus 25 ~~~~~gR~~~l~~l~~~l~--~~~~~~v~i~G~~G~GKTtL~~~~~~~~~~~~~~~~~~~~~~~~~ 88 (183)
...++|+...+..+.+.+. .....-|+|+|++|+||+++|+.++..-... ....+.++|...
T Consensus 5 ~~~liG~S~~~~~~~~~i~~~a~~~~pVlI~GE~GtGK~~lA~~iH~~s~r~--~~pfv~v~c~~~ 68 (326)
T PRK11608 5 KDNLLGEANSFLEVLEQVSRLAPLDKPVLIIGERGTGKELIASRLHYLSSRW--QGPFISLNCAAL 68 (326)
T ss_pred cCccEECCHHHHHHHHHHHHHhCCCCCEEEECCCCCcHHHHHHHHHHhCCcc--CCCeEEEeCCCC
Confidence 3457888888888887665 3334678999999999999999988543221 234556677654
No 415
>PRK11819 putative ABC transporter ATP-binding protein; Reviewed
Probab=97.94 E-value=6.2e-05 Score=63.68 Aligned_cols=127 Identities=17% Similarity=0.182 Sum_probs=66.2
Q ss_pred CccEEEEEeCCCCcHHHHHHHHHhHHhhhh---ccc---ceEEEEecCCc-------CHHHH----------------HH
Q 035585 46 NVNIVGVYGMGGIGKTTLVKEFARQASEEK---LFD---QVVFSEVSQTP-------DIKKI----------------HG 96 (183)
Q Consensus 46 ~~~~v~i~G~~G~GKTtL~~~~~~~~~~~~---~~~---~~~~~~~~~~~-------~~~~~----------------~~ 96 (183)
+...++|+|++|+|||||++.++....... .+. .+.|+ ++.. +..+. ..
T Consensus 349 ~Ge~~~l~G~NGsGKSTLl~~i~G~~~p~~G~i~~~~~~~i~~v--~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~ 426 (556)
T PRK11819 349 PGGIVGIIGPNGAGKSTLFKMITGQEQPDSGTIKIGETVKLAYV--DQSRDALDPNKTVWEEISGGLDIIKVGNREIPSR 426 (556)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCceEEEEE--eCchhhcCCCCCHHHHHHhhcccccccccHHHHH
Confidence 446899999999999999999987654321 111 12222 1110 11111 12
Q ss_pred HHHHHhCCCch-------hHHHHHHHHHHHHHHhcCCeEEEEEeCCCCccc---ccccCcCCCCCCCCcEEEEEecChHH
Q 035585 97 EIAEKLGLEFS-------EEAESRRASRLYERLKKEKMILVILDNIWKYLD---LETVGIPFGDDHRGCKLLLTARDCNV 166 (183)
Q Consensus 97 ~i~~~l~~~~~-------~~~~~~~~~~~~~~~~~~~~~llvlD~~~~~~~---~~~l~~~~~~~~~~~~iiitsr~~~~ 166 (183)
.+++.++.... .-+..+.....+......++-+|++||.....+ ...+...+... .+ .+|++||+...
T Consensus 427 ~~l~~~~l~~~~~~~~~~~LSgG~~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~-~~-tvi~vtHd~~~ 504 (556)
T PRK11819 427 AYVGRFNFKGGDQQKKVGVLSGGERNRLHLAKTLKQGGNVLLLDEPTNDLDVETLRALEEALLEF-PG-CAVVISHDRWF 504 (556)
T ss_pred HHHHhCCCChhHhcCchhhCCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHhC-CC-eEEEEECCHHH
Confidence 23333333210 011112222222222237889999999876543 22222222222 35 48999999998
Q ss_pred HhhcCCCCcc
Q 035585 167 LLNMSLCRSE 176 (183)
Q Consensus 167 ~~~~~~~~~~ 176 (183)
+..+......
T Consensus 505 ~~~~~d~i~~ 514 (556)
T PRK11819 505 LDRIATHILA 514 (556)
T ss_pred HHHhCCEEEE
Confidence 8876654433
No 416
>PRK07993 DNA polymerase III subunit delta'; Validated
Probab=97.94 E-value=2.2e-05 Score=62.18 Aligned_cols=129 Identities=10% Similarity=0.107 Sum_probs=72.1
Q ss_pred HHHHHHHHHhccC-CccEEEEEeCCCCcHHHHHHHHHhHHhhhhccc--c------eEEEEecCCcCHHHHHHHHHHHhC
Q 035585 33 STLKSIQDALTDV-NVNIVGVYGMGGIGKTTLVKEFARQASEEKLFD--Q------VVFSEVSQTPDIKKIHGEIAEKLG 103 (183)
Q Consensus 33 ~~l~~l~~~l~~~-~~~~v~i~G~~G~GKTtL~~~~~~~~~~~~~~~--~------~~~~~~~~~~~~~~~~~~i~~~l~ 103 (183)
...+.|.+.+.++ -++.++++|+.|+||+++|..++..+-...... . +.++.....+++..+. .
T Consensus 9 ~~~~~l~~~~~~~rl~HA~Lf~G~~G~Gk~~lA~~~A~~LlC~~~~~~~~Cg~C~sC~~~~~g~HPD~~~i~-------p 81 (334)
T PRK07993 9 PDYEQLVGSYQAGRGHHALLIQALPGMGDDALIYALSRWLMCQQPQGHKSCGHCRGCQLMQAGTHPDYYTLT-------P 81 (334)
T ss_pred HHHHHHHHHHHcCCcceEEeeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCCCCEEEEe-------c
Confidence 4566777776644 356788999999999999999988774321100 0 0000111111111000 0
Q ss_pred CCchhHHHHHHHHHHHHHH----hcCCeEEEEEeCCCCcc--cccccCcCCCCCCCCcEEEEEecChH-HHh
Q 035585 104 LEFSEEAESRRASRLYERL----KKEKMILVILDNIWKYL--DLETVGIPFGDDHRGCKLLLTARDCN-VLL 168 (183)
Q Consensus 104 ~~~~~~~~~~~~~~~~~~~----~~~~~~llvlD~~~~~~--~~~~l~~~~~~~~~~~~iiitsr~~~-~~~ 168 (183)
......-..+.++.+.+.+ .+++..++|||+++.+. ..+.++..+.....++.+|++|.+.+ ++.
T Consensus 82 ~~~~~~I~idqiR~l~~~~~~~~~~g~~kV~iI~~ae~m~~~AaNaLLKtLEEPp~~t~fiL~t~~~~~lLp 153 (334)
T PRK07993 82 EKGKSSLGVDAVREVTEKLYEHARLGGAKVVWLPDAALLTDAAANALLKTLEEPPENTWFFLACREPARLLA 153 (334)
T ss_pred ccccccCCHHHHHHHHHHHhhccccCCceEEEEcchHhhCHHHHHHHHHHhcCCCCCeEEEEEECChhhChH
Confidence 0000001112223333332 23678899999999774 56677777777777888888887655 443
No 417
>PRK11022 dppD dipeptide transporter ATP-binding subunit; Provisional
Probab=97.94 E-value=4.3e-05 Score=60.40 Aligned_cols=27 Identities=22% Similarity=0.331 Sum_probs=23.7
Q ss_pred CccEEEEEeCCCCcHHHHHHHHHhHHh
Q 035585 46 NVNIVGVYGMGGIGKTTLVKEFARQAS 72 (183)
Q Consensus 46 ~~~~v~i~G~~G~GKTtL~~~~~~~~~ 72 (183)
+..+++|+|++|+|||||++.+...+.
T Consensus 32 ~Ge~~~lvG~sGsGKSTL~~~l~Gll~ 58 (326)
T PRK11022 32 QGEVVGIVGESGSGKSVSSLAIMGLID 58 (326)
T ss_pred CCCEEEEECCCCChHHHHHHHHHcCCC
Confidence 457899999999999999999987664
No 418
>PRK06835 DNA replication protein DnaC; Validated
Probab=97.94 E-value=0.00013 Score=57.69 Aligned_cols=38 Identities=26% Similarity=0.350 Sum_probs=30.1
Q ss_pred CccEEEEEeCCCCcHHHHHHHHHhHHhhhhcccceEEEEe
Q 035585 46 NVNIVGVYGMGGIGKTTLVKEFARQASEEKLFDQVVFSEV 85 (183)
Q Consensus 46 ~~~~v~i~G~~G~GKTtL~~~~~~~~~~~~~~~~~~~~~~ 85 (183)
....+.++|++|+|||.|+..+++.+..+ ...++|+.+
T Consensus 182 ~~~~Lll~G~~GtGKThLa~aIa~~l~~~--g~~V~y~t~ 219 (329)
T PRK06835 182 NNENLLFYGNTGTGKTFLSNCIAKELLDR--GKSVIYRTA 219 (329)
T ss_pred cCCcEEEECCCCCcHHHHHHHHHHHHHHC--CCeEEEEEH
Confidence 34789999999999999999999988765 234666544
No 419
>PRK11308 dppF dipeptide transporter ATP-binding subunit; Provisional
Probab=97.94 E-value=2.1e-05 Score=62.17 Aligned_cols=26 Identities=27% Similarity=0.374 Sum_probs=23.0
Q ss_pred CccEEEEEeCCCCcHHHHHHHHHhHH
Q 035585 46 NVNIVGVYGMGGIGKTTLVKEFARQA 71 (183)
Q Consensus 46 ~~~~v~i~G~~G~GKTtL~~~~~~~~ 71 (183)
+...++|+|++|+|||||++.+...+
T Consensus 40 ~Ge~~~IvG~sGsGKSTLl~~l~gl~ 65 (327)
T PRK11308 40 RGKTLAVVGESGCGKSTLARLLTMIE 65 (327)
T ss_pred CCCEEEEECCCCCcHHHHHHHHHcCC
Confidence 45789999999999999999998654
No 420
>COG3854 SpoIIIAA ncharacterized protein conserved in bacteria [Function unknown]
Probab=97.94 E-value=2.6e-05 Score=57.96 Aligned_cols=122 Identities=19% Similarity=0.152 Sum_probs=67.3
Q ss_pred HHHHhccCCccEEEEEeCCCCcHHHHHHHHHhHHhhhh-ccc--ceEEEEecCCcC-----HHHHHHHHHHHhCCCchhH
Q 035585 38 IQDALTDVNVNIVGVYGMGGIGKTTLVKEFARQASEEK-LFD--QVVFSEVSQTPD-----IKKIHGEIAEKLGLEFSEE 109 (183)
Q Consensus 38 l~~~l~~~~~~~v~i~G~~G~GKTtL~~~~~~~~~~~~-~~~--~~~~~~~~~~~~-----~~~~~~~i~~~l~~~~~~~ 109 (183)
+...+....--..++.||||+|||||++-++..+.... .|. .+..++-.+... ... ..+..+.....+-.
T Consensus 128 li~~ly~~g~lntLiigpP~~GKTTlLRdiaR~~s~g~~~~l~kkv~IiDersEIag~~~gvpq--~~~g~R~dVld~cp 205 (308)
T COG3854 128 LIKDLYQNGWLNTLIIGPPQVGKTTLLRDIARLLSDGINQFLPKKVGIIDERSEIAGCLNGVPQ--HGRGRRMDVLDPCP 205 (308)
T ss_pred HHHHHHhcCceeeEEecCCCCChHHHHHHHHHHhhccccccCCceEEEEeccchhhccccCCch--hhhhhhhhhcccch
Confidence 44444444445689999999999999999988776531 122 244443332110 000 01111111111111
Q ss_pred HHHHHHHHHHHHHhcCCeEEEEEeCCCCcccccccCcCCCCCCCCcEEEEEecChHHHh
Q 035585 110 AESRRASRLYERLKKEKMILVILDNIWKYLDLETVGIPFGDDHRGCKLLLTARDCNVLL 168 (183)
Q Consensus 110 ~~~~~~~~~~~~~~~~~~~llvlD~~~~~~~~~~l~~~~~~~~~~~~iiitsr~~~~~~ 168 (183)
. .+-+....+.-.+-++|+||+...++...++.. ...|.+++.|.|-..+..
T Consensus 206 k----~~gmmmaIrsm~PEViIvDEIGt~~d~~A~~ta---~~~GVkli~TaHG~~ied 257 (308)
T COG3854 206 K----AEGMMMAIRSMSPEVIIVDEIGTEEDALAILTA---LHAGVKLITTAHGNGIED 257 (308)
T ss_pred H----HHHHHHHHHhcCCcEEEEeccccHHHHHHHHHH---HhcCcEEEEeeccccHHH
Confidence 1 122223333456789999999877654444333 345899999999887755
No 421
>cd03275 ABC_SMC1_euk Eukaryotic SMC1 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for
Probab=97.94 E-value=8.7e-05 Score=56.34 Aligned_cols=24 Identities=21% Similarity=0.351 Sum_probs=21.0
Q ss_pred cEEEEEeCCCCcHHHHHHHHHhHH
Q 035585 48 NIVGVYGMGGIGKTTLVKEFARQA 71 (183)
Q Consensus 48 ~~v~i~G~~G~GKTtL~~~~~~~~ 71 (183)
++.+|+|++|+|||+|+.++.--+
T Consensus 23 ~~~~i~G~NGsGKStll~ai~~~l 46 (247)
T cd03275 23 RFTCIIGPNGSGKSNLMDAISFVL 46 (247)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHh
Confidence 588999999999999999987443
No 422
>PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional
Probab=97.94 E-value=5.7e-05 Score=62.90 Aligned_cols=27 Identities=22% Similarity=0.345 Sum_probs=23.3
Q ss_pred CccEEEEEeCCCCcHHHHHHHHHhHHh
Q 035585 46 NVNIVGVYGMGGIGKTTLVKEFARQAS 72 (183)
Q Consensus 46 ~~~~v~i~G~~G~GKTtL~~~~~~~~~ 72 (183)
+...++|+|++|+|||||++.+.....
T Consensus 28 ~Ge~~~liG~nGsGKSTLl~~l~G~~~ 54 (490)
T PRK10938 28 AGDSWAFVGANGSGKSALARALAGELP 54 (490)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhccCC
Confidence 457899999999999999999986543
No 423
>PRK11144 modC molybdate transporter ATP-binding protein; Provisional
Probab=97.94 E-value=4.5e-05 Score=60.89 Aligned_cols=27 Identities=26% Similarity=0.544 Sum_probs=23.3
Q ss_pred CccEEEEEeCCCCcHHHHHHHHHhHHh
Q 035585 46 NVNIVGVYGMGGIGKTTLVKEFARQAS 72 (183)
Q Consensus 46 ~~~~v~i~G~~G~GKTtL~~~~~~~~~ 72 (183)
+...++|.|++|+|||||++.++....
T Consensus 23 ~Ge~~~l~G~nGsGKSTLl~~iaGl~~ 49 (352)
T PRK11144 23 AQGITAIFGRSGAGKTSLINAISGLTR 49 (352)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 446899999999999999999987553
No 424
>PRK14260 phosphate ABC transporter ATP-binding protein; Provisional
Probab=97.94 E-value=7.3e-05 Score=57.12 Aligned_cols=27 Identities=26% Similarity=0.529 Sum_probs=23.6
Q ss_pred CccEEEEEeCCCCcHHHHHHHHHhHHh
Q 035585 46 NVNIVGVYGMGGIGKTTLVKEFARQAS 72 (183)
Q Consensus 46 ~~~~v~i~G~~G~GKTtL~~~~~~~~~ 72 (183)
+...++|+|++|+|||||++.++..+.
T Consensus 32 ~Ge~~~l~G~nGsGKSTLlk~l~Gl~~ 58 (259)
T PRK14260 32 RNKVTAIIGPSGCGKSTFIKTLNRISE 58 (259)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhcC
Confidence 457899999999999999999987654
No 425
>PRK10261 glutathione transporter ATP-binding protein; Provisional
Probab=97.93 E-value=3.4e-05 Score=66.11 Aligned_cols=27 Identities=19% Similarity=0.283 Sum_probs=23.6
Q ss_pred CccEEEEEeCCCCcHHHHHHHHHhHHh
Q 035585 46 NVNIVGVYGMGGIGKTTLVKEFARQAS 72 (183)
Q Consensus 46 ~~~~v~i~G~~G~GKTtL~~~~~~~~~ 72 (183)
+..+++|+|++|+|||||++.+...+.
T Consensus 41 ~Ge~~~lvG~nGsGKSTLl~~l~Gll~ 67 (623)
T PRK10261 41 RGETLAIVGESGSGKSVTALALMRLLE 67 (623)
T ss_pred CCCEEEEECCCCChHHHHHHHHHcCCC
Confidence 457899999999999999999987653
No 426
>PRK11000 maltose/maltodextrin transporter ATP-binding protein; Provisional
Probab=97.93 E-value=2.5e-05 Score=62.77 Aligned_cols=27 Identities=30% Similarity=0.375 Sum_probs=23.4
Q ss_pred CccEEEEEeCCCCcHHHHHHHHHhHHh
Q 035585 46 NVNIVGVYGMGGIGKTTLVKEFARQAS 72 (183)
Q Consensus 46 ~~~~v~i~G~~G~GKTtL~~~~~~~~~ 72 (183)
....++|.|++|+|||||++.++....
T Consensus 28 ~Ge~~~l~G~nGsGKSTLL~~iaGl~~ 54 (369)
T PRK11000 28 EGEFVVFVGPSGCGKSTLLRMIAGLED 54 (369)
T ss_pred CCCEEEEECCCCCcHHHHHHHHhCCCC
Confidence 447899999999999999999987653
No 427
>COG4988 CydD ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]
Probab=97.93 E-value=2.6e-05 Score=64.64 Aligned_cols=48 Identities=17% Similarity=0.086 Sum_probs=31.3
Q ss_pred CCeEEEEEeCCCCccccccc---CcCCCCCCCCcEEEEEecChHHHhhcCC
Q 035585 125 EKMILVILDNIWKYLDLETV---GIPFGDDHRGCKLLLTARDCNVLLNMSL 172 (183)
Q Consensus 125 ~~~~llvlD~~~~~~~~~~l---~~~~~~~~~~~~iiitsr~~~~~~~~~~ 172 (183)
.++-++++||+....+.+.- ...+....++..+++.||+...+.....
T Consensus 473 ~~~~l~llDEpTA~LD~etE~~i~~~l~~l~~~ktvl~itHrl~~~~~~D~ 523 (559)
T COG4988 473 SPASLLLLDEPTAHLDAETEQIILQALQELAKQKTVLVITHRLEDAADADR 523 (559)
T ss_pred CCCCEEEecCCccCCCHhHHHHHHHHHHHHHhCCeEEEEEcChHHHhcCCE
Confidence 67999999998755443322 2223334445678888888887775544
No 428
>PRK15079 oligopeptide ABC transporter ATP-binding protein OppF; Provisional
Probab=97.93 E-value=8.9e-05 Score=58.72 Aligned_cols=26 Identities=27% Similarity=0.455 Sum_probs=22.9
Q ss_pred CccEEEEEeCCCCcHHHHHHHHHhHH
Q 035585 46 NVNIVGVYGMGGIGKTTLVKEFARQA 71 (183)
Q Consensus 46 ~~~~v~i~G~~G~GKTtL~~~~~~~~ 71 (183)
+..+++|+|++|+|||||++.+...+
T Consensus 46 ~Ge~~~lvG~sGsGKSTLlk~i~Gl~ 71 (331)
T PRK15079 46 EGETLGVVGESGCGKSTFARAIIGLV 71 (331)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHCCC
Confidence 45789999999999999999998654
No 429
>PRK14244 phosphate ABC transporter ATP-binding protein; Provisional
Probab=97.93 E-value=8.9e-05 Score=56.34 Aligned_cols=26 Identities=27% Similarity=0.516 Sum_probs=22.7
Q ss_pred CccEEEEEeCCCCcHHHHHHHHHhHH
Q 035585 46 NVNIVGVYGMGGIGKTTLVKEFARQA 71 (183)
Q Consensus 46 ~~~~v~i~G~~G~GKTtL~~~~~~~~ 71 (183)
+...++|.|++|+|||||++.++...
T Consensus 30 ~Ge~~~I~G~nGsGKSTLl~~i~G~~ 55 (251)
T PRK14244 30 KREVTAFIGPSGCGKSTFLRCFNRMN 55 (251)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhc
Confidence 45689999999999999999998654
No 430
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=97.93 E-value=0.00015 Score=59.34 Aligned_cols=87 Identities=16% Similarity=0.209 Sum_probs=48.6
Q ss_pred ccEEEEEeCCCCcHHHHHHHHHhHHh-hhhcccceEEEEecCCc-CHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHHhc
Q 035585 47 VNIVGVYGMGGIGKTTLVKEFARQAS-EEKLFDQVVFSEVSQTP-DIKKIHGEIAEKLGLEFSEEAESRRASRLYERLKK 124 (183)
Q Consensus 47 ~~~v~i~G~~G~GKTtL~~~~~~~~~-~~~~~~~~~~~~~~~~~-~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~ 124 (183)
.++++++|++|+||||++..++..+. .. ....+.++++.... ...+.+....+.++.+.........+...+..+
T Consensus 221 ~~~i~~vGptGvGKTTt~~kLA~~~~~~~-~g~~V~li~~D~~r~~a~eqL~~~a~~~~vp~~~~~~~~~l~~~l~~~-- 297 (424)
T PRK05703 221 GGVVALVGPTGVGKTTTLAKLAARYALLY-GKKKVALITLDTYRIGAVEQLKTYAKIMGIPVEVVYDPKELAKALEQL-- 297 (424)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHHhc-CCCeEEEEECCccHHHHHHHHHHHHHHhCCceEccCCHHhHHHHHHHh--
Confidence 46899999999999999999988776 22 12346666665431 122333333444444332211112222223333
Q ss_pred CCeEEEEEeCCC
Q 035585 125 EKMILVILDNIW 136 (183)
Q Consensus 125 ~~~~llvlD~~~ 136 (183)
...-+|++|...
T Consensus 298 ~~~DlVlIDt~G 309 (424)
T PRK05703 298 RDCDVILIDTAG 309 (424)
T ss_pred CCCCEEEEeCCC
Confidence 345778888653
No 431
>PRK15455 PrkA family serine protein kinase; Provisional
Probab=97.93 E-value=1.8e-05 Score=66.16 Aligned_cols=50 Identities=18% Similarity=0.272 Sum_probs=43.3
Q ss_pred cccccchHHHHHHHHHHhc------cCCccEEEEEeCCCCcHHHHHHHHHhHHhhh
Q 035585 25 YEAFKSRLSTLKSIQDALT------DVNVNIVGVYGMGGIGKTTLVKEFARQASEE 74 (183)
Q Consensus 25 ~~~~~gR~~~l~~l~~~l~------~~~~~~v~i~G~~G~GKTtL~~~~~~~~~~~ 74 (183)
..+++|-++.++++.+.+. +.+.++++++||+|+|||+|++.+...+...
T Consensus 75 F~d~yGlee~ieriv~~l~~Aa~gl~~~~~IL~LvGPpG~GKSsLa~~la~~le~~ 130 (644)
T PRK15455 75 FEEFYGMEEAIEQIVSYFRHAAQGLEEKKQILYLLGPVGGGKSSLAERLKSLMERV 130 (644)
T ss_pred hhcccCcHHHHHHHHHHHHHHHHhcCCCCceEEEecCCCCCchHHHHHHHHHHHhC
Confidence 3468999999999999883 5667899999999999999999999987764
No 432
>TIGR01193 bacteriocin_ABC ABC-type bacteriocin transporter. This model describes ABC-type bacteriocin transporter. The amino terminal domain (pfam03412) processes the N-terminal leader peptide from the bacteriocin while C-terminal domains resemble ABC transporter membrane protein and ATP-binding cassette domain. In general, bacteriocins are agents which are responsible for killing or inhibiting the closely related species or even different strains of the same species. Bacteriocins are usually encoded by bacterial plasmids. Bacteriocins are named after the species and hence in literature one encounters various names e.g., leucocin from Leuconostic geldium; pedicocin from Pedicoccus acidilactici; sakacin from Lactobacillus sake etc.
Probab=97.93 E-value=6.8e-05 Score=65.19 Aligned_cols=28 Identities=29% Similarity=0.292 Sum_probs=23.7
Q ss_pred CCccEEEEEeCCCCcHHHHHHHHHhHHh
Q 035585 45 VNVNIVGVYGMGGIGKTTLVKEFARQAS 72 (183)
Q Consensus 45 ~~~~~v~i~G~~G~GKTtL~~~~~~~~~ 72 (183)
.+...++|+|++|+|||||++.+...+.
T Consensus 498 ~~G~~vaIvG~SGsGKSTLlklL~gl~~ 525 (708)
T TIGR01193 498 KMNSKTTIVGMSGSGKSTLAKLLVGFFQ 525 (708)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhccCC
Confidence 3457899999999999999999986554
No 433
>PRK11160 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Probab=97.93 E-value=5.1e-05 Score=64.45 Aligned_cols=28 Identities=29% Similarity=0.368 Sum_probs=24.0
Q ss_pred CCccEEEEEeCCCCcHHHHHHHHHhHHh
Q 035585 45 VNVNIVGVYGMGGIGKTTLVKEFARQAS 72 (183)
Q Consensus 45 ~~~~~v~i~G~~G~GKTtL~~~~~~~~~ 72 (183)
.+...++|+|++|+|||||++.+...+.
T Consensus 364 ~~G~~~aivG~sGsGKSTL~~ll~g~~~ 391 (574)
T PRK11160 364 KAGEKVALLGRTGCGKSTLLQLLTRAWD 391 (574)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence 3557899999999999999999987654
No 434
>PRK14243 phosphate transporter ATP-binding protein; Provisional
Probab=97.93 E-value=6.9e-05 Score=57.43 Aligned_cols=26 Identities=31% Similarity=0.525 Sum_probs=22.7
Q ss_pred CccEEEEEeCCCCcHHHHHHHHHhHH
Q 035585 46 NVNIVGVYGMGGIGKTTLVKEFARQA 71 (183)
Q Consensus 46 ~~~~v~i~G~~G~GKTtL~~~~~~~~ 71 (183)
+...++|.|++|+|||||++.+....
T Consensus 35 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 60 (264)
T PRK14243 35 KNQITAFIGPSGCGKSTILRCFNRLN 60 (264)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhh
Confidence 45789999999999999999998643
No 435
>PRK11650 ugpC glycerol-3-phosphate transporter ATP-binding subunit; Provisional
Probab=97.93 E-value=1.2e-05 Score=64.34 Aligned_cols=27 Identities=26% Similarity=0.389 Sum_probs=23.3
Q ss_pred CccEEEEEeCCCCcHHHHHHHHHhHHh
Q 035585 46 NVNIVGVYGMGGIGKTTLVKEFARQAS 72 (183)
Q Consensus 46 ~~~~v~i~G~~G~GKTtL~~~~~~~~~ 72 (183)
+...++|.|++|+|||||++.++....
T Consensus 29 ~Ge~~~llG~sGsGKSTLLr~iaGl~~ 55 (356)
T PRK11650 29 DGEFIVLVGPSGCGKSTLLRMVAGLER 55 (356)
T ss_pred CCCEEEEECCCCCcHHHHHHHHHCCCC
Confidence 446899999999999999999987554
No 436
>CHL00206 ycf2 Ycf2; Provisional
Probab=97.93 E-value=1.8e-05 Score=73.44 Aligned_cols=28 Identities=29% Similarity=0.262 Sum_probs=24.5
Q ss_pred CCccEEEEEeCCCCcHHHHHHHHHhHHh
Q 035585 45 VNVNIVGVYGMGGIGKTTLVKEFARQAS 72 (183)
Q Consensus 45 ~~~~~v~i~G~~G~GKTtL~~~~~~~~~ 72 (183)
..++-|+++||+|+|||.||++++.+..
T Consensus 1628 ~pPKGILLiGPPGTGKTlLAKALA~es~ 1655 (2281)
T CHL00206 1628 SPSRGILVIGSIGTGRSYLVKYLATNSY 1655 (2281)
T ss_pred CCCCceEEECCCCCCHHHHHHHHHHhcC
Confidence 4567899999999999999999998754
No 437
>TIGR01192 chvA glucan exporter ATP-binding protein. This model describes glucan exporter ATP binding protein in bacteria. It belongs to the larger ABC transporter superfamily with the characteristic ATP binding motif. The In general, this protein is in some ways implicated in osmoregulation and suggested to participate in the export of glucan from the cytoplasm to periplasm. The cyclic beta-1,2-glucan in the bactrerial periplasmic space is suggested to confer the property of high osmolority. It has also been demonstrated that mutants in this loci have lost functions of virulence and motility. It is unclear as to how virulence and osmoadaptaion are related.
Probab=97.93 E-value=3.7e-05 Score=65.40 Aligned_cols=28 Identities=32% Similarity=0.392 Sum_probs=23.8
Q ss_pred CCccEEEEEeCCCCcHHHHHHHHHhHHh
Q 035585 45 VNVNIVGVYGMGGIGKTTLVKEFARQAS 72 (183)
Q Consensus 45 ~~~~~v~i~G~~G~GKTtL~~~~~~~~~ 72 (183)
.+...++|+|++|+|||||++.+...+.
T Consensus 359 ~~G~~~~ivG~sGsGKSTL~~ll~g~~~ 386 (585)
T TIGR01192 359 KAGQTVAIVGPTGAGKTTLINLLQRVYD 386 (585)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHccCCC
Confidence 3557899999999999999999976554
No 438
>PRK10762 D-ribose transporter ATP binding protein; Provisional
Probab=97.92 E-value=5.8e-05 Score=63.04 Aligned_cols=26 Identities=23% Similarity=0.383 Sum_probs=22.9
Q ss_pred CccEEEEEeCCCCcHHHHHHHHHhHH
Q 035585 46 NVNIVGVYGMGGIGKTTLVKEFARQA 71 (183)
Q Consensus 46 ~~~~v~i~G~~G~GKTtL~~~~~~~~ 71 (183)
+...++|+|++|+|||||++.++..+
T Consensus 29 ~Ge~~~l~G~NGsGKSTLl~~l~G~~ 54 (501)
T PRK10762 29 PGRVMALVGENGAGKSTMMKVLTGIY 54 (501)
T ss_pred CCeEEEEECCCCCCHHHHHHHHhCCC
Confidence 45789999999999999999998655
No 439
>KOG0652 consensus 26S proteasome regulatory complex, ATPase RPT5 [Posttranslational modification, protein turnover, chaperones]
Probab=97.92 E-value=9.6e-05 Score=56.05 Aligned_cols=99 Identities=17% Similarity=0.262 Sum_probs=61.1
Q ss_pred hhhcCCCcccccchHHHHHHHHHHhc-------------cCCccEEEEEeCCCCcHHHHHHHHHhHHhhhhcccceEEEE
Q 035585 18 WLKSNKGYEAFKSRLSTLKSIQDALT-------------DVNVNIVGVYGMGGIGKTTLVKEFARQASEEKLFDQVVFSE 84 (183)
Q Consensus 18 ~~~~~~~~~~~~gR~~~l~~l~~~l~-------------~~~~~~v~i~G~~G~GKTtL~~~~~~~~~~~~~~~~~~~~~ 84 (183)
...|.....++=|-+++++.|.++.. -.++.-+++|||+|.|||.+|++.+.+-... |-..
T Consensus 163 DekPtE~YsDiGGldkQIqELvEAiVLpmth~ekF~~lgi~pPKGvLmYGPPGTGKTlmARAcAaqT~aT--FLKL---- 236 (424)
T KOG0652|consen 163 DEKPTEQYSDIGGLDKQIQELVEAIVLPMTHKEKFENLGIRPPKGVLMYGPPGTGKTLMARACAAQTNAT--FLKL---- 236 (424)
T ss_pred ccCCcccccccccHHHHHHHHHHHhccccccHHHHHhcCCCCCCceEeeCCCCCcHHHHHHHHHHhccch--HHHh----
Confidence 34466666777788889988888653 1345679999999999999999987664432 1100
Q ss_pred ecCCcCHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHHhcCCeEEEEEeCCC
Q 035585 85 VSQTPDIKKIHGEIAEKLGLEFSEEAESRRASRLYERLKKEKMILVILDNIW 136 (183)
Q Consensus 85 ~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~llvlD~~~ 136 (183)
.. +.+ .... ++ .....++..+...++..+.+++||+++
T Consensus 237 -Ag-PQL---VQMf---IG------dGAkLVRDAFaLAKEkaP~IIFIDElD 274 (424)
T KOG0652|consen 237 -AG-PQL---VQMF---IG------DGAKLVRDAFALAKEKAPTIIFIDELD 274 (424)
T ss_pred -cc-hHH---Hhhh---hc------chHHHHHHHHHHhhccCCeEEEEechh
Confidence 00 000 0000 01 112233444445556889999999987
No 440
>cd03291 ABCC_CFTR1 The CFTR subfamily domain 1. The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits, or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.
Probab=97.92 E-value=8.1e-05 Score=57.65 Aligned_cols=29 Identities=21% Similarity=0.298 Sum_probs=24.5
Q ss_pred CCccEEEEEeCCCCcHHHHHHHHHhHHhh
Q 035585 45 VNVNIVGVYGMGGIGKTTLVKEFARQASE 73 (183)
Q Consensus 45 ~~~~~v~i~G~~G~GKTtL~~~~~~~~~~ 73 (183)
.+...++|+|++|+|||||++.++..+..
T Consensus 61 ~~Ge~~~liG~NGsGKSTLl~~I~Gl~~p 89 (282)
T cd03291 61 EKGEMLAITGSTGSGKTSLLMLILGELEP 89 (282)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCCCC
Confidence 34468999999999999999999887643
No 441
>TIGR03258 PhnT 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT. This ATP-binding component of an ABC transport system is found in Salmonella and Burkholderia lineages in the vicinity of enzymes for the breakdown of 2-aminoethylphosphonate.
Probab=97.92 E-value=4.2e-05 Score=61.25 Aligned_cols=28 Identities=29% Similarity=0.452 Sum_probs=23.8
Q ss_pred CccEEEEEeCCCCcHHHHHHHHHhHHhh
Q 035585 46 NVNIVGVYGMGGIGKTTLVKEFARQASE 73 (183)
Q Consensus 46 ~~~~v~i~G~~G~GKTtL~~~~~~~~~~ 73 (183)
...+++|.|++|+|||||++.++.....
T Consensus 30 ~Ge~~~llGpsGsGKSTLLr~iaGl~~p 57 (362)
T TIGR03258 30 AGELLALIGKSGCGKTTLLRAIAGFVKA 57 (362)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCC
Confidence 4468999999999999999999876543
No 442
>PRK10787 DNA-binding ATP-dependent protease La; Provisional
Probab=97.92 E-value=4.4e-05 Score=66.80 Aligned_cols=48 Identities=21% Similarity=0.271 Sum_probs=38.3
Q ss_pred ccccchHHHHHHHHHHhc------cCCccEEEEEeCCCCcHHHHHHHHHhHHhh
Q 035585 26 EAFKSRLSTLKSIQDALT------DVNVNIVGVYGMGGIGKTTLVKEFARQASE 73 (183)
Q Consensus 26 ~~~~gR~~~l~~l~~~l~------~~~~~~v~i~G~~G~GKTtL~~~~~~~~~~ 73 (183)
..++|.++..+.+.+++. ..+.+.++++||+|+|||++++.++..+..
T Consensus 322 ~~~~g~~~vK~~i~~~l~~~~~~~~~~g~~i~l~GppG~GKTtl~~~ia~~l~~ 375 (784)
T PRK10787 322 TDHYGLERVKDRILEYLAVQSRVNKIKGPILCLVGPPGVGKTSLGQSIAKATGR 375 (784)
T ss_pred hhccCHHHHHHHHHHHHHHHHhcccCCCceEEEECCCCCCHHHHHHHHHHHhCC
Confidence 457788888888887665 235578999999999999999999987653
No 443
>PRK14258 phosphate ABC transporter ATP-binding protein; Provisional
Probab=97.92 E-value=6.4e-05 Score=57.50 Aligned_cols=27 Identities=26% Similarity=0.491 Sum_probs=23.9
Q ss_pred CccEEEEEeCCCCcHHHHHHHHHhHHh
Q 035585 46 NVNIVGVYGMGGIGKTTLVKEFARQAS 72 (183)
Q Consensus 46 ~~~~v~i~G~~G~GKTtL~~~~~~~~~ 72 (183)
+...++|.|++|+|||||++.+.....
T Consensus 32 ~Ge~~~I~G~nGsGKSTLl~~l~Gl~~ 58 (261)
T PRK14258 32 QSKVTAIIGPSGCGKSTFLKCLNRMNE 58 (261)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhcccC
Confidence 457899999999999999999987654
No 444
>PRK12422 chromosomal replication initiation protein; Provisional
Probab=97.91 E-value=7.2e-05 Score=61.48 Aligned_cols=99 Identities=13% Similarity=0.218 Sum_probs=55.6
Q ss_pred ccEEEEEeCCCCcHHHHHHHHHhHHhhhhcccceEEEEecCCcCHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHHhcCC
Q 035585 47 VNIVGVYGMGGIGKTTLVKEFARQASEEKLFDQVVFSEVSQTPDIKKIHGEIAEKLGLEFSEEAESRRASRLYERLKKEK 126 (183)
Q Consensus 47 ~~~v~i~G~~G~GKTtL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 126 (183)
..-+.|+|++|+|||+|++.+.+.+... ...++|++.. .+...+.+.+... ....+...+ ..
T Consensus 141 ~npl~L~G~~G~GKTHLl~Ai~~~l~~~--~~~v~yi~~~------~f~~~~~~~l~~~--------~~~~f~~~~--~~ 202 (445)
T PRK12422 141 FNPIYLFGPEGSGKTHLMQAAVHALRES--GGKILYVRSE------LFTEHLVSAIRSG--------EMQRFRQFY--RN 202 (445)
T ss_pred CceEEEEcCCCCCHHHHHHHHHHHHHHc--CCCEEEeeHH------HHHHHHHHHHhcc--------hHHHHHHHc--cc
Confidence 3568999999999999999999988654 3345665532 2333443333211 112222222 34
Q ss_pred eEEEEEeCCCCccc----ccccCcCCCC-CCCCcEEEEEecC
Q 035585 127 MILVILDNIWKYLD----LETVGIPFGD-DHRGCKLLLTARD 163 (183)
Q Consensus 127 ~~llvlD~~~~~~~----~~~l~~~~~~-~~~~~~iiitsr~ 163 (183)
.-+|+|||++.... .+.+...++. ...+..+|+||..
T Consensus 203 ~dvLiIDDiq~l~~k~~~qeelf~l~N~l~~~~k~IIlts~~ 244 (445)
T PRK12422 203 VDALFIEDIEVFSGKGATQEEFFHTFNSLHTEGKLIVISSTC 244 (445)
T ss_pred CCEEEEcchhhhcCChhhHHHHHHHHHHHHHCCCcEEEecCC
Confidence 56899999986532 1122222221 1134567777753
No 445
>PRK09473 oppD oligopeptide transporter ATP-binding component; Provisional
Probab=97.91 E-value=3e-05 Score=61.40 Aligned_cols=27 Identities=19% Similarity=0.277 Sum_probs=23.7
Q ss_pred CccEEEEEeCCCCcHHHHHHHHHhHHh
Q 035585 46 NVNIVGVYGMGGIGKTTLVKEFARQAS 72 (183)
Q Consensus 46 ~~~~v~i~G~~G~GKTtL~~~~~~~~~ 72 (183)
+..+++|+|++|+|||||++.+...+.
T Consensus 41 ~Ge~~~ivG~sGsGKSTL~~~l~Gl~~ 67 (330)
T PRK09473 41 AGETLGIVGESGSGKSQTAFALMGLLA 67 (330)
T ss_pred CCCEEEEECCCCchHHHHHHHHHcCCC
Confidence 457899999999999999999987664
No 446
>cd03288 ABCC_SUR2 The SUR domain 2. The sulfonylurea receptor SUR is an ATP binding cassette (ABC) protein of the ABCC/MRP family. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.
Probab=97.91 E-value=0.00011 Score=56.00 Aligned_cols=26 Identities=35% Similarity=0.486 Sum_probs=22.9
Q ss_pred CccEEEEEeCCCCcHHHHHHHHHhHH
Q 035585 46 NVNIVGVYGMGGIGKTTLVKEFARQA 71 (183)
Q Consensus 46 ~~~~v~i~G~~G~GKTtL~~~~~~~~ 71 (183)
+...++|.|++|+|||||++.++..+
T Consensus 46 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 71 (257)
T cd03288 46 PGQKVGICGRTGSGKSSLSLAFFRMV 71 (257)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHccc
Confidence 45789999999999999999998754
No 447
>COG4178 ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only]
Probab=97.91 E-value=2.4e-05 Score=65.76 Aligned_cols=123 Identities=16% Similarity=0.102 Sum_probs=68.5
Q ss_pred CccEEEEEeCCCCcHHHHHHHHHhHHhhhh-----cccc-eEEE---------------EecCCc--CHHHHHHHHHHHh
Q 035585 46 NVNIVGVYGMGGIGKTTLVKEFARQASEEK-----LFDQ-VVFS---------------EVSQTP--DIKKIHGEIAEKL 102 (183)
Q Consensus 46 ~~~~v~i~G~~G~GKTtL~~~~~~~~~~~~-----~~~~-~~~~---------------~~~~~~--~~~~~~~~i~~~l 102 (183)
+...+.|.|++|+|||+|.+.++..+.-.. +.+. ++|+ +.+... -..+...+++.+.
T Consensus 418 ~G~~llI~G~SG~GKTsLlRaiaGLWP~g~G~I~~P~~~~~lflpQ~PY~p~GtLre~l~YP~~~~~~~d~~l~~vL~~v 497 (604)
T COG4178 418 PGERLLITGESGAGKTSLLRALAGLWPWGSGRISMPADSALLFLPQRPYLPQGTLREALCYPNAAPDFSDAELVAVLHKV 497 (604)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhccCccCCCceecCCCCceEEecCCCCCCCccHHHHHhCCCCCCCCChHHHHHHHHHc
Confidence 446799999999999999999987663210 0011 2332 011111 1122333333333
Q ss_pred CCC---------chh---HHHHHHHHHHHHHHhcCCeEEEEEeCCCCccc---ccccCcCCCCCCCCcEEEEEecChHHH
Q 035585 103 GLE---------FSE---EAESRRASRLYERLKKEKMILVILDNIWKYLD---LETVGIPFGDDHRGCKLLLTARDCNVL 167 (183)
Q Consensus 103 ~~~---------~~~---~~~~~~~~~~~~~~~~~~~~llvlD~~~~~~~---~~~l~~~~~~~~~~~~iiitsr~~~~~ 167 (183)
+.+ .+- -+..+..+..+.++.-+++-.+||||+.+..+ -..+...+....+++.||-++|...+.
T Consensus 498 gL~~L~~rl~~~~~W~~vLS~GEqQRlafARilL~kP~~v~LDEATsALDe~~e~~l~q~l~~~lp~~tvISV~Hr~tl~ 577 (604)
T COG4178 498 GLGDLAERLDEEDRWDRVLSGGEQQRLAFARLLLHKPKWVFLDEATSALDEETEDRLYQLLKEELPDATVISVGHRPTLW 577 (604)
T ss_pred CcHHHHHHHhccCcHhhhcChhHHHHHHHHHHHHcCCCEEEEecchhccChHHHHHHHHHHHhhCCCCEEEEeccchhhH
Confidence 221 111 12223333334444448999999999876543 222233344566888999999988876
Q ss_pred h
Q 035585 168 L 168 (183)
Q Consensus 168 ~ 168 (183)
.
T Consensus 578 ~ 578 (604)
T COG4178 578 N 578 (604)
T ss_pred H
Confidence 5
No 448
>PRK14236 phosphate transporter ATP-binding protein; Provisional
Probab=97.90 E-value=7.3e-05 Score=57.56 Aligned_cols=27 Identities=30% Similarity=0.518 Sum_probs=23.4
Q ss_pred CccEEEEEeCCCCcHHHHHHHHHhHHh
Q 035585 46 NVNIVGVYGMGGIGKTTLVKEFARQAS 72 (183)
Q Consensus 46 ~~~~v~i~G~~G~GKTtL~~~~~~~~~ 72 (183)
+..+++|+|++|+|||||++.+...+.
T Consensus 50 ~Ge~~~I~G~nGsGKSTLl~~laGl~~ 76 (272)
T PRK14236 50 KNRVTAFIGPSGCGKSTLLRCFNRMND 76 (272)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhcCC
Confidence 457899999999999999999986643
No 449
>TIGR02204 MsbA_rel ABC transporter, permease/ATP-binding protein. This protein is related to a Proteobacterial ATP transporter that exports lipid A and to eukaryotic P-glycoproteins.
Probab=97.90 E-value=5.3e-05 Score=64.28 Aligned_cols=29 Identities=28% Similarity=0.305 Sum_probs=24.6
Q ss_pred CCccEEEEEeCCCCcHHHHHHHHHhHHhh
Q 035585 45 VNVNIVGVYGMGGIGKTTLVKEFARQASE 73 (183)
Q Consensus 45 ~~~~~v~i~G~~G~GKTtL~~~~~~~~~~ 73 (183)
.+...++|+|++|+|||||++.+...+..
T Consensus 364 ~~Ge~i~IvG~sGsGKSTLlklL~gl~~p 392 (576)
T TIGR02204 364 RPGETVALVGPSGAGKSTLFQLLLRFYDP 392 (576)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHhccCC
Confidence 35578999999999999999999876643
No 450
>TIGR03877 thermo_KaiC_1 KaiC domain protein, Ph0284 family. Members of this family contain a single copy of the KaiC domain (pfam06745) that occurs in two copies of the circadian clock protein kinase KaiC itself. Members occur primarily in thermophilic archaea and in Thermotoga.
Probab=97.90 E-value=0.00019 Score=54.20 Aligned_cols=40 Identities=18% Similarity=0.293 Sum_probs=30.8
Q ss_pred CccEEEEEeCCCCcHHHHHHHHHhHHhhhhcccceEEEEecC
Q 035585 46 NVNIVGVYGMGGIGKTTLVKEFARQASEEKLFDQVVFSEVSQ 87 (183)
Q Consensus 46 ~~~~v~i~G~~G~GKTtL~~~~~~~~~~~~~~~~~~~~~~~~ 87 (183)
+..+++|.|++|+|||+|+.++......+ -..++|+....
T Consensus 20 ~gs~~lI~G~pGsGKT~la~~~l~~~~~~--ge~~lyvs~ee 59 (237)
T TIGR03877 20 ERNVVLLSGGPGTGKSIFSQQFLWNGLQM--GEPGIYVALEE 59 (237)
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHHHc--CCcEEEEEeeC
Confidence 45789999999999999999987765432 44577777654
No 451
>TIGR02238 recomb_DMC1 meiotic recombinase Dmc1. This model describes DMC1, a subfamily of a larger family of DNA repair and recombination proteins. It is eukaryotic only and most closely related to eukaryotic RAD51. It also resembles archaeal RadA (TIGR02236) and RadB (TIGR02237) and bacterial RecA (TIGR02012). It has been characterized for human as a recombinase active only in meiosis.
Probab=97.90 E-value=0.00018 Score=56.53 Aligned_cols=92 Identities=24% Similarity=0.302 Sum_probs=54.8
Q ss_pred CccEEEEEeCCCCcHHHHHHHHHhHHhhh----hcccceEEEEecCCcCHHHHHHHHHHHhCCCchh-------------
Q 035585 46 NVNIVGVYGMGGIGKTTLVKEFARQASEE----KLFDQVVFSEVSQTPDIKKIHGEIAEKLGLEFSE------------- 108 (183)
Q Consensus 46 ~~~~v~i~G~~G~GKTtL~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~------------- 108 (183)
...++.|+|++|+|||+|+.+++-..... ..-..++|++.........+ .++++.++.....
T Consensus 95 ~G~iteI~G~~GsGKTql~lqla~~~~~~~~~gg~~~~vvYIdtE~~f~~eRi-~~~a~~~g~d~~~~l~~i~~~~~~~~ 173 (313)
T TIGR02238 95 SMSITEVFGEFRCGKTQLSHTLCVTAQLPREMGGGNGKVAYIDTEGTFRPDRI-RAIAERFGVDPDAVLDNILYARAYTS 173 (313)
T ss_pred CCeEEEEECCCCCCcCHHHHHHHHHHhcchhhcCCCCeEEEEEcCCCCCHHHH-HHHHHHcCCChHHhcCcEEEecCCCH
Confidence 44688899999999999998877433211 01235899988876555443 3445555433211
Q ss_pred HHHHHHHHHHHHHHhcCCeEEEEEeCCCCc
Q 035585 109 EAESRRASRLYERLKKEKMILVILDNIWKY 138 (183)
Q Consensus 109 ~~~~~~~~~~~~~~~~~~~~llvlD~~~~~ 138 (183)
....+.+..+...+...+.-+||+|.+..+
T Consensus 174 e~~~~~l~~l~~~i~~~~~~LvVIDSisal 203 (313)
T TIGR02238 174 EHQMELLDYLAAKFSEEPFRLLIVDSIMAL 203 (313)
T ss_pred HHHHHHHHHHHHHhhccCCCEEEEEcchHh
Confidence 111122233333444456779999987633
No 452
>TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2. The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2.
Probab=97.89 E-value=7.8e-05 Score=62.57 Aligned_cols=26 Identities=42% Similarity=0.532 Sum_probs=22.7
Q ss_pred CccEEEEEeCCCCcHHHHHHHHHhHH
Q 035585 46 NVNIVGVYGMGGIGKTTLVKEFARQA 71 (183)
Q Consensus 46 ~~~~v~i~G~~G~GKTtL~~~~~~~~ 71 (183)
+..+++|.|++|+|||||++.+....
T Consensus 309 ~Ge~~~l~G~NGsGKSTLl~~l~Gl~ 334 (520)
T TIGR03269 309 EGEIFGIVGTSGAGKTTLSKIIAGVL 334 (520)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 44689999999999999999998654
No 453
>KOG0735 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=97.89 E-value=4.5e-05 Score=64.80 Aligned_cols=100 Identities=19% Similarity=0.287 Sum_probs=63.3
Q ss_pred EEEEEeCCCCcHHHHHHHHHhHHhhhhcccceEEEEecCCcCHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHHhcCCeE
Q 035585 49 IVGVYGMGGIGKTTLVKEFARQASEEKLFDQVVFSEVSQTPDIKKIHGEIAEKLGLEFSEEAESRRASRLYERLKKEKMI 128 (183)
Q Consensus 49 ~v~i~G~~G~GKTtL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 128 (183)
-++++|++|+|||.||.+++....-+ |+++... +++.+.+ + ..++.++.++++.+.-++.
T Consensus 703 giLLyGppGcGKT~la~a~a~~~~~~-------fisvKGP----ElL~KyI---G------aSEq~vR~lF~rA~~a~PC 762 (952)
T KOG0735|consen 703 GILLYGPPGCGKTLLASAIASNSNLR-------FISVKGP----ELLSKYI---G------ASEQNVRDLFERAQSAKPC 762 (952)
T ss_pred ceEEECCCCCcHHHHHHHHHhhCCee-------EEEecCH----HHHHHHh---c------ccHHHHHHHHHHhhccCCe
Confidence 48999999999999999988764432 4444432 2222221 1 1345567788888878999
Q ss_pred EEEEeCCCCcc-------------cccccCcCCC--CCCCCcEEEEEecChHHHh
Q 035585 129 LVILDNIWKYL-------------DLETVGIPFG--DDHRGCKLLLTARDCNVLL 168 (183)
Q Consensus 129 llvlD~~~~~~-------------~~~~l~~~~~--~~~~~~~iiitsr~~~~~~ 168 (183)
+|.|||+|+.- -++.++..++ ..-.|..|+..|...+++.
T Consensus 763 iLFFDEfdSiAPkRGhDsTGVTDRVVNQlLTelDG~Egl~GV~i~aaTsRpdliD 817 (952)
T KOG0735|consen 763 ILFFDEFDSIAPKRGHDSTGVTDRVVNQLLTELDGAEGLDGVYILAATSRPDLID 817 (952)
T ss_pred EEEeccccccCcccCCCCCCchHHHHHHHHHhhccccccceEEEEEecCCccccC
Confidence 99999998551 1334433332 2244666666665555554
No 454
>PRK05022 anaerobic nitric oxide reductase transcription regulator; Provisional
Probab=97.89 E-value=2.1e-05 Score=65.75 Aligned_cols=64 Identities=11% Similarity=0.217 Sum_probs=48.7
Q ss_pred CcccccchHHHHHHHHHHhc--cCCccEEEEEeCCCCcHHHHHHHHHhHHhhhhcccceEEEEecCCc
Q 035585 24 GYEAFKSRLSTLKSIQDALT--DVNVNIVGVYGMGGIGKTTLVKEFARQASEEKLFDQVVFSEVSQTP 89 (183)
Q Consensus 24 ~~~~~~gR~~~l~~l~~~l~--~~~~~~v~i~G~~G~GKTtL~~~~~~~~~~~~~~~~~~~~~~~~~~ 89 (183)
....++|+...+..+.+.+. ......|+|+|++|+||+++|+.++..-... ....+.++|..-+
T Consensus 185 ~~~~iig~s~~~~~~~~~i~~~a~~~~pVlI~Ge~GtGK~~~A~~ih~~s~r~--~~p~v~v~c~~~~ 250 (509)
T PRK05022 185 KEGEMIGQSPAMQQLKKEIEVVAASDLNVLILGETGVGKELVARAIHAASPRA--DKPLVYLNCAALP 250 (509)
T ss_pred cCCceeecCHHHHHHHHHHHHHhCCCCcEEEECCCCccHHHHHHHHHHhCCcC--CCCeEEEEcccCC
Confidence 45678999999988888776 3445689999999999999999998864432 3345677776554
No 455
>PRK13639 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=97.89 E-value=3.5e-05 Score=59.44 Aligned_cols=26 Identities=31% Similarity=0.460 Sum_probs=22.9
Q ss_pred CccEEEEEeCCCCcHHHHHHHHHhHH
Q 035585 46 NVNIVGVYGMGGIGKTTLVKEFARQA 71 (183)
Q Consensus 46 ~~~~v~i~G~~G~GKTtL~~~~~~~~ 71 (183)
+..+++|+|++|+|||||++.+...+
T Consensus 27 ~Ge~~~l~G~nGsGKSTLl~~i~Gl~ 52 (275)
T PRK13639 27 KGEMVALLGPNGAGKSTLFLHFNGIL 52 (275)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 45789999999999999999998654
No 456
>PRK10522 multidrug transporter membrane component/ATP-binding component; Provisional
Probab=97.89 E-value=3.5e-05 Score=65.03 Aligned_cols=28 Identities=21% Similarity=0.201 Sum_probs=23.7
Q ss_pred CCccEEEEEeCCCCcHHHHHHHHHhHHh
Q 035585 45 VNVNIVGVYGMGGIGKTTLVKEFARQAS 72 (183)
Q Consensus 45 ~~~~~v~i~G~~G~GKTtL~~~~~~~~~ 72 (183)
.+...++|+|++|+|||||++.+...+.
T Consensus 347 ~~G~~~aivG~sGsGKSTL~~ll~g~~~ 374 (547)
T PRK10522 347 KRGELLFLIGGNGSGKSTLAMLLTGLYQ 374 (547)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 3457899999999999999999986553
No 457
>PRK11823 DNA repair protein RadA; Provisional
Probab=97.89 E-value=3.8e-05 Score=63.19 Aligned_cols=88 Identities=25% Similarity=0.317 Sum_probs=53.3
Q ss_pred CccEEEEEeCCCCcHHHHHHHHHhHHhhhhcccceEEEEecCCcCHHHHHHHHHHHhCCCchh--HHHHHHHHHHHHHHh
Q 035585 46 NVNIVGVYGMGGIGKTTLVKEFARQASEEKLFDQVVFSEVSQTPDIKKIHGEIAEKLGLEFSE--EAESRRASRLYERLK 123 (183)
Q Consensus 46 ~~~~v~i~G~~G~GKTtL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~--~~~~~~~~~~~~~~~ 123 (183)
+..++.|.|++|+|||||+.+++...... -..++|+...... ..+.. -++.++..... .........+.+.+.
T Consensus 79 ~Gs~~lI~G~pG~GKTtL~lq~a~~~a~~--g~~vlYvs~Ees~--~qi~~-ra~rlg~~~~~l~~~~e~~l~~i~~~i~ 153 (446)
T PRK11823 79 PGSVVLIGGDPGIGKSTLLLQVAARLAAA--GGKVLYVSGEESA--SQIKL-RAERLGLPSDNLYLLAETNLEAILATIE 153 (446)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHHhc--CCeEEEEEccccH--HHHHH-HHHHcCCChhcEEEeCCCCHHHHHHHHH
Confidence 34689999999999999999999877643 3357787765432 22222 23444432111 000112344555555
Q ss_pred cCCeEEEEEeCCCCc
Q 035585 124 KEKMILVILDNIWKY 138 (183)
Q Consensus 124 ~~~~~llvlD~~~~~ 138 (183)
+.+.-+||+|.++.+
T Consensus 154 ~~~~~lVVIDSIq~l 168 (446)
T PRK11823 154 EEKPDLVVIDSIQTM 168 (446)
T ss_pred hhCCCEEEEechhhh
Confidence 567889999998644
No 458
>PRK10762 D-ribose transporter ATP binding protein; Provisional
Probab=97.89 E-value=7.7e-05 Score=62.34 Aligned_cols=26 Identities=35% Similarity=0.514 Sum_probs=22.5
Q ss_pred CccEEEEEeCCCCcHHHHHHHHHhHH
Q 035585 46 NVNIVGVYGMGGIGKTTLVKEFARQA 71 (183)
Q Consensus 46 ~~~~v~i~G~~G~GKTtL~~~~~~~~ 71 (183)
+..+++|+|++|+|||||++.+....
T Consensus 277 ~Ge~~~liG~NGsGKSTLl~~l~G~~ 302 (501)
T PRK10762 277 KGEILGVSGLMGAGRTELMKVLYGAL 302 (501)
T ss_pred CCcEEEEecCCCCCHHHHHHHHhCCC
Confidence 34689999999999999999998654
No 459
>cd03299 ABC_ModC_like Archeal protein closely related to ModC. ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.88 E-value=6.6e-05 Score=56.52 Aligned_cols=27 Identities=22% Similarity=0.293 Sum_probs=23.3
Q ss_pred CccEEEEEeCCCCcHHHHHHHHHhHHh
Q 035585 46 NVNIVGVYGMGGIGKTTLVKEFARQAS 72 (183)
Q Consensus 46 ~~~~v~i~G~~G~GKTtL~~~~~~~~~ 72 (183)
+...++|.|++|+|||||++.+.....
T Consensus 24 ~Ge~~~i~G~nG~GKStLl~~l~G~~~ 50 (235)
T cd03299 24 RGDYFVILGPTGSGKSVLLETIAGFIK 50 (235)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCcC
Confidence 457899999999999999999987543
No 460
>PRK14721 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=97.88 E-value=0.00013 Score=59.40 Aligned_cols=27 Identities=30% Similarity=0.436 Sum_probs=23.1
Q ss_pred CccEEEEEeCCCCcHHHHHHHHHhHHh
Q 035585 46 NVNIVGVYGMGGIGKTTLVKEFARQAS 72 (183)
Q Consensus 46 ~~~~v~i~G~~G~GKTtL~~~~~~~~~ 72 (183)
....++++|++|+||||++..++....
T Consensus 190 ~g~vi~lvGpnG~GKTTtlakLA~~~~ 216 (420)
T PRK14721 190 QGGVYALIGPTGVGKTTTTAKLAARAV 216 (420)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHH
Confidence 456899999999999999999887643
No 461
>TIGR02142 modC_ABC molybdenum ABC transporter, ATP-binding protein. This model represents the ATP-binding cassette (ABC) protein of the three subunit molybdate ABC transporter. The three proteins of this complex are homologous to proteins of the sulfate ABC transporter. Molybdenum may be used in nitrogenases of nitrogen-fixing bacteria and in molybdopterin cofactors. In some cases, molybdate may be transported by a sulfate transporter rather than by a specific molybdate transporter.
Probab=97.88 E-value=6.5e-05 Score=60.04 Aligned_cols=27 Identities=30% Similarity=0.546 Sum_probs=23.2
Q ss_pred CccEEEEEeCCCCcHHHHHHHHHhHHh
Q 035585 46 NVNIVGVYGMGGIGKTTLVKEFARQAS 72 (183)
Q Consensus 46 ~~~~v~i~G~~G~GKTtL~~~~~~~~~ 72 (183)
...+++|.|++|+|||||++.++....
T Consensus 22 ~Gei~~l~G~nGsGKSTLl~~iaGl~~ 48 (354)
T TIGR02142 22 GQGVTAIFGRSGSGKTTLIRLIAGLTR 48 (354)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 346899999999999999999987653
No 462
>PRK13635 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=97.88 E-value=3.7e-05 Score=59.44 Aligned_cols=27 Identities=30% Similarity=0.337 Sum_probs=23.4
Q ss_pred CccEEEEEeCCCCcHHHHHHHHHhHHh
Q 035585 46 NVNIVGVYGMGGIGKTTLVKEFARQAS 72 (183)
Q Consensus 46 ~~~~v~i~G~~G~GKTtL~~~~~~~~~ 72 (183)
+..+++|.|++|+|||||++.++..+.
T Consensus 32 ~Ge~~~i~G~nGaGKSTLl~~i~G~~~ 58 (279)
T PRK13635 32 EGEWVAIVGHNGSGKSTLAKLLNGLLL 58 (279)
T ss_pred CCCEEEEECCCCCcHHHHHHHHhcCCC
Confidence 456899999999999999999986654
No 463
>PRK14270 phosphate ABC transporter ATP-binding protein; Provisional
Probab=97.88 E-value=6.2e-05 Score=57.18 Aligned_cols=26 Identities=27% Similarity=0.483 Sum_probs=23.1
Q ss_pred CccEEEEEeCCCCcHHHHHHHHHhHH
Q 035585 46 NVNIVGVYGMGGIGKTTLVKEFARQA 71 (183)
Q Consensus 46 ~~~~v~i~G~~G~GKTtL~~~~~~~~ 71 (183)
+..+++|.|++|+|||||++.+....
T Consensus 29 ~Ge~~~i~G~nGsGKSTLl~~l~G~~ 54 (251)
T PRK14270 29 ENKITALIGPSGCGKSTFLRCLNRMN 54 (251)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhcc
Confidence 45789999999999999999999754
No 464
>TIGR02974 phageshock_pspF psp operon transcriptional activator PspF. Members of this protein family are PspF, the sigma-54-dependent transcriptional activator of the phage shock protein (psp) operon, in Escherichia coli and numerous other species. The psp operon is induced by a number of stress conditions, including heat shock, ethanol, and filamentous phage infection. Changed com_name to adhere to TIGR role notes conventions. 09/15/06 - DMH
Probab=97.88 E-value=2.4e-05 Score=61.89 Aligned_cols=58 Identities=10% Similarity=0.061 Sum_probs=37.6
Q ss_pred cchHHHHHHHHHHhc--cCCccEEEEEeCCCCcHHHHHHHHHhHHhhhhcccceEEEEecCC
Q 035585 29 KSRLSTLKSIQDALT--DVNVNIVGVYGMGGIGKTTLVKEFARQASEEKLFDQVVFSEVSQT 88 (183)
Q Consensus 29 ~gR~~~l~~l~~~l~--~~~~~~v~i~G~~G~GKTtL~~~~~~~~~~~~~~~~~~~~~~~~~ 88 (183)
+|+...+..+.+.+. .....-|+|+|++|+||+++|+.++..-... ....+.++|...
T Consensus 2 iG~S~~m~~~~~~~~~~a~~~~pVLI~GE~GtGK~~lAr~iH~~s~r~--~~pfv~vnc~~~ 61 (329)
T TIGR02974 2 IGESNAFLEVLEQVSRLAPLDRPVLIIGERGTGKELIAARLHYLSKRW--QGPLVKLNCAAL 61 (329)
T ss_pred CcCCHHHHHHHHHHHHHhCCCCCEEEECCCCChHHHHHHHHHHhcCcc--CCCeEEEeCCCC
Confidence 455555555555444 2334668999999999999999988654322 233455666643
No 465
>COG0464 SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones]
Probab=97.88 E-value=3.6e-05 Score=64.18 Aligned_cols=73 Identities=23% Similarity=0.336 Sum_probs=47.2
Q ss_pred CccEEEEEeCCCCcHHHHHHHHHhHHhhhhcccceEEEEecCCcCHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHHhcC
Q 035585 46 NVNIVGVYGMGGIGKTTLVKEFARQASEEKLFDQVVFSEVSQTPDIKKIHGEIAEKLGLEFSEEAESRRASRLYERLKKE 125 (183)
Q Consensus 46 ~~~~v~i~G~~G~GKTtL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~ 125 (183)
.+..++++||+|+|||+||++++...... |+.+... .+ .... .. .....+..++...+..
T Consensus 275 ~~~giLl~GpPGtGKT~lAkava~~~~~~-------fi~v~~~-~l---~sk~--------vG-esek~ir~~F~~A~~~ 334 (494)
T COG0464 275 PPKGVLLYGPPGTGKTLLAKAVALESRSR-------FISVKGS-EL---LSKW--------VG-ESEKNIRELFEKARKL 334 (494)
T ss_pred CCCeeEEECCCCCCHHHHHHHHHhhCCCe-------EEEeeCH-HH---hccc--------cc-hHHHHHHHHHHHHHcC
Confidence 44579999999999999999999965543 2222221 11 1111 01 1233456666666668
Q ss_pred CeEEEEEeCCCCc
Q 035585 126 KMILVILDNIWKY 138 (183)
Q Consensus 126 ~~~llvlD~~~~~ 138 (183)
.+.+|+|||+|..
T Consensus 335 ~p~iiFiDEiDs~ 347 (494)
T COG0464 335 APSIIFIDEIDSL 347 (494)
T ss_pred CCcEEEEEchhhh
Confidence 8999999999855
No 466
>PRK04328 hypothetical protein; Provisional
Probab=97.87 E-value=0.00016 Score=54.97 Aligned_cols=41 Identities=20% Similarity=0.286 Sum_probs=31.4
Q ss_pred CccEEEEEeCCCCcHHHHHHHHHhHHhhhhcccceEEEEecCC
Q 035585 46 NVNIVGVYGMGGIGKTTLVKEFARQASEEKLFDQVVFSEVSQT 88 (183)
Q Consensus 46 ~~~~v~i~G~~G~GKTtL~~~~~~~~~~~~~~~~~~~~~~~~~ 88 (183)
+..+++|.|++|+|||+|+.+++...-.+ -..++|+.....
T Consensus 22 ~gs~ili~G~pGsGKT~l~~~fl~~~~~~--ge~~lyis~ee~ 62 (249)
T PRK04328 22 ERNVVLLSGGPGTGKSIFSQQFLWNGLQM--GEPGVYVALEEH 62 (249)
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHHHhc--CCcEEEEEeeCC
Confidence 45789999999999999999987764332 345778777554
No 467
>PRK08118 topology modulation protein; Reviewed
Probab=97.87 E-value=3.1e-05 Score=55.34 Aligned_cols=35 Identities=23% Similarity=0.467 Sum_probs=26.8
Q ss_pred cEEEEEeCCCCcHHHHHHHHHhHHhhh-hcccceEE
Q 035585 48 NIVGVYGMGGIGKTTLVKEFARQASEE-KLFDQVVF 82 (183)
Q Consensus 48 ~~v~i~G~~G~GKTtL~~~~~~~~~~~-~~~~~~~~ 82 (183)
.-|.|+|++|+||||||+.+++.+... ..++.++|
T Consensus 2 ~rI~I~G~~GsGKSTlak~L~~~l~~~~~~lD~l~~ 37 (167)
T PRK08118 2 KKIILIGSGGSGKSTLARQLGEKLNIPVHHLDALFW 37 (167)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhCCCceecchhhc
Confidence 358899999999999999999987654 12444554
No 468
>cd00046 DEXDc DEAD-like helicases superfamily. A diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region.
Probab=97.87 E-value=3.4e-05 Score=52.21 Aligned_cols=35 Identities=20% Similarity=-0.067 Sum_probs=25.3
Q ss_pred EEEEEeCCCCcHHHHHHHHHhHHhhhhcccceEEE
Q 035585 49 IVGVYGMGGIGKTTLVKEFARQASEEKLFDQVVFS 83 (183)
Q Consensus 49 ~v~i~G~~G~GKTtL~~~~~~~~~~~~~~~~~~~~ 83 (183)
.+.|.|++|+|||+++..+............++++
T Consensus 2 ~~~i~~~~G~GKT~~~~~~~~~~~~~~~~~~~lv~ 36 (144)
T cd00046 2 DVLLAAPTGSGKTLAALLPILELLDSLKGGQVLVL 36 (144)
T ss_pred CEEEECCCCCchhHHHHHHHHHHHhcccCCCEEEE
Confidence 46899999999999988888776653223345554
No 469
>PRK09700 D-allose transporter ATP-binding protein; Provisional
Probab=97.87 E-value=0.00012 Score=61.24 Aligned_cols=26 Identities=31% Similarity=0.410 Sum_probs=22.8
Q ss_pred CccEEEEEeCCCCcHHHHHHHHHhHH
Q 035585 46 NVNIVGVYGMGGIGKTTLVKEFARQA 71 (183)
Q Consensus 46 ~~~~v~i~G~~G~GKTtL~~~~~~~~ 71 (183)
...+++|+|++|+|||||++.++...
T Consensus 30 ~Ge~~~liG~nGsGKSTLl~~i~Gl~ 55 (510)
T PRK09700 30 PGEIHALLGENGAGKSTLMKVLSGIH 55 (510)
T ss_pred CCcEEEEECCCCCCHHHHHHHHcCCc
Confidence 45789999999999999999998654
No 470
>PRK13642 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=97.87 E-value=3.3e-05 Score=59.64 Aligned_cols=27 Identities=22% Similarity=0.275 Sum_probs=23.3
Q ss_pred CccEEEEEeCCCCcHHHHHHHHHhHHh
Q 035585 46 NVNIVGVYGMGGIGKTTLVKEFARQAS 72 (183)
Q Consensus 46 ~~~~v~i~G~~G~GKTtL~~~~~~~~~ 72 (183)
+...++|+|++|+|||||++.+.....
T Consensus 32 ~Ge~~~I~G~nGsGKSTLl~~l~Gl~~ 58 (277)
T PRK13642 32 KGEWVSIIGQNGSGKSTTARLIDGLFE 58 (277)
T ss_pred CCCEEEEECCCCCcHHHHHHHHhcCCC
Confidence 457899999999999999999986553
No 471
>PRK13637 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=97.87 E-value=3.4e-05 Score=59.89 Aligned_cols=26 Identities=31% Similarity=0.534 Sum_probs=23.0
Q ss_pred CccEEEEEeCCCCcHHHHHHHHHhHH
Q 035585 46 NVNIVGVYGMGGIGKTTLVKEFARQA 71 (183)
Q Consensus 46 ~~~~v~i~G~~G~GKTtL~~~~~~~~ 71 (183)
+...++|.|++|+|||||++.+...+
T Consensus 32 ~Ge~~~i~G~nGaGKSTLl~~l~Gl~ 57 (287)
T PRK13637 32 DGEFVGLIGHTGSGKSTLIQHLNGLL 57 (287)
T ss_pred CCCEEEEECCCCCcHHHHHHHHhcCC
Confidence 45789999999999999999998654
No 472
>KOG0058 consensus Peptide exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.87 E-value=9.1e-05 Score=62.95 Aligned_cols=27 Identities=26% Similarity=0.329 Sum_probs=22.8
Q ss_pred CCccEEEEEeCCCCcHHHHHHHHHhHH
Q 035585 45 VNVNIVGVYGMGGIGKTTLVKEFARQA 71 (183)
Q Consensus 45 ~~~~~v~i~G~~G~GKTtL~~~~~~~~ 71 (183)
.+..+++++||+|.||||++..+.+.+
T Consensus 492 ~pGe~vALVGPSGsGKSTiasLL~rfY 518 (716)
T KOG0058|consen 492 RPGEVVALVGPSGSGKSTIASLLLRFY 518 (716)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHhc
Confidence 345689999999999999999987644
No 473
>PRK14266 phosphate ABC transporter ATP-binding protein; Provisional
Probab=97.86 E-value=0.00012 Score=55.53 Aligned_cols=26 Identities=23% Similarity=0.525 Sum_probs=22.7
Q ss_pred CccEEEEEeCCCCcHHHHHHHHHhHH
Q 035585 46 NVNIVGVYGMGGIGKTTLVKEFARQA 71 (183)
Q Consensus 46 ~~~~v~i~G~~G~GKTtL~~~~~~~~ 71 (183)
+...++|.|++|+|||||++.++...
T Consensus 28 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 53 (250)
T PRK14266 28 KNSVTALIGPSGCGKSTFIRTLNRMN 53 (250)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhh
Confidence 45789999999999999999998643
No 474
>TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2. The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2.
Probab=97.86 E-value=6.2e-05 Score=63.15 Aligned_cols=26 Identities=23% Similarity=0.500 Sum_probs=23.2
Q ss_pred CccEEEEEeCCCCcHHHHHHHHHhHH
Q 035585 46 NVNIVGVYGMGGIGKTTLVKEFARQA 71 (183)
Q Consensus 46 ~~~~v~i~G~~G~GKTtL~~~~~~~~ 71 (183)
+...++|+|++|+|||||++.++...
T Consensus 25 ~Ge~~~iiG~nGsGKSTLl~~l~Gl~ 50 (520)
T TIGR03269 25 EGEVLGILGRSGAGKSVLMHVLRGMD 50 (520)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhhcc
Confidence 45789999999999999999998864
No 475
>cd02025 PanK Pantothenate kinase (PanK) catalyzes the phosphorylation of pantothenic acid to form 4'-phosphopantothenic, which is the first of five steps in coenzyme A (CoA) biosynthetic pathway. The reaction carried out by this enzyme is a key regulatory point in CoA biosynthesis.
Probab=97.86 E-value=0.00011 Score=54.94 Aligned_cols=25 Identities=28% Similarity=0.461 Sum_probs=22.3
Q ss_pred EEEEEeCCCCcHHHHHHHHHhHHhh
Q 035585 49 IVGVYGMGGIGKTTLVKEFARQASE 73 (183)
Q Consensus 49 ~v~i~G~~G~GKTtL~~~~~~~~~~ 73 (183)
+++|.|++|+|||||++.+...+..
T Consensus 1 IigI~G~sGSGKTTla~~L~~~l~~ 25 (220)
T cd02025 1 IIGIAGSVAVGKSTTARVLQALLSR 25 (220)
T ss_pred CEEeeCCCCCCHHHHHHHHHHHHhh
Confidence 4789999999999999999988764
No 476
>TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family. Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown.
Probab=97.86 E-value=9.5e-05 Score=62.53 Aligned_cols=128 Identities=17% Similarity=0.189 Sum_probs=65.8
Q ss_pred CccEEEEEeCCCCcHHHHHHHHHhHHhhhh---ccc---ceEEEEecC-----CcCHHHH----------------HHHH
Q 035585 46 NVNIVGVYGMGGIGKTTLVKEFARQASEEK---LFD---QVVFSEVSQ-----TPDIKKI----------------HGEI 98 (183)
Q Consensus 46 ~~~~v~i~G~~G~GKTtL~~~~~~~~~~~~---~~~---~~~~~~~~~-----~~~~~~~----------------~~~i 98 (183)
+...++|.|++|+|||||++.+........ .+. .+.|+.-.. ..+..+. ...+
T Consensus 347 ~Ge~~~l~G~NGsGKSTLl~~l~G~~~p~~G~i~~~~~~~i~~v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~ 426 (552)
T TIGR03719 347 PGGIVGVIGPNGAGKSTLFRMITGQEQPDSGTIKIGETVKLAYVDQSRDALDPNKTVWEEISGGLDIIQLGKREVPSRAY 426 (552)
T ss_pred CCCEEEEECCCCCCHHHHHHHHcCCCCCCCeEEEECCceEEEEEeCCccccCCCCcHHHHHHhhccccccCcchHHHHHH
Confidence 446899999999999999999987654220 111 122221110 0011111 1223
Q ss_pred HHHhCCCch-------hHHHHHHHHHHHHHHhcCCeEEEEEeCCCCcccc---cccCcCCCCCCCCcEEEEEecChHHHh
Q 035585 99 AEKLGLEFS-------EEAESRRASRLYERLKKEKMILVILDNIWKYLDL---ETVGIPFGDDHRGCKLLLTARDCNVLL 168 (183)
Q Consensus 99 ~~~l~~~~~-------~~~~~~~~~~~~~~~~~~~~~llvlD~~~~~~~~---~~l~~~~~~~~~~~~iiitsr~~~~~~ 168 (183)
++.++.... ..+..+.....+......++-++++||..+..+. ..+...+... .+ .||++||+...+.
T Consensus 427 l~~~~l~~~~~~~~~~~LSgGe~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~-~~-~viivsHd~~~~~ 504 (552)
T TIGR03719 427 VGRFNFKGSDQQKKVGQLSGGERNRVHLAKTLKSGGNVLLLDEPTNDLDVETLRALEEALLEF-AG-CAVVISHDRWFLD 504 (552)
T ss_pred HHhCCCChhHhcCchhhCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHC-CC-eEEEEeCCHHHHH
Confidence 344333210 0111122222222223378899999998766432 1222222222 24 4999999999888
Q ss_pred hcCCCCc
Q 035585 169 NMSLCRS 175 (183)
Q Consensus 169 ~~~~~~~ 175 (183)
.+.....
T Consensus 505 ~~~d~i~ 511 (552)
T TIGR03719 505 RIATHIL 511 (552)
T ss_pred HhCCEEE
Confidence 7665443
No 477
>PRK14263 phosphate ABC transporter ATP-binding protein; Provisional
Probab=97.86 E-value=8.9e-05 Score=56.75 Aligned_cols=27 Identities=30% Similarity=0.532 Sum_probs=23.2
Q ss_pred CCccEEEEEeCCCCcHHHHHHHHHhHH
Q 035585 45 VNVNIVGVYGMGGIGKTTLVKEFARQA 71 (183)
Q Consensus 45 ~~~~~v~i~G~~G~GKTtL~~~~~~~~ 71 (183)
.+...++|.|++|+|||||++.+...+
T Consensus 32 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 58 (261)
T PRK14263 32 RKNEITGFIGPSGCGKSTVLRSLNRMN 58 (261)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHccc
Confidence 345789999999999999999997654
No 478
>TIGR01359 UMP_CMP_kin_fam UMP-CMP kinase family. This subfamily of the adenylate kinase superfamily contains examples of UMP-CMP kinase, as well as others proteins with unknown specificity, some currently designated adenylate kinase. All known members are eukaryotic.
Probab=97.85 E-value=6.8e-05 Score=54.09 Aligned_cols=24 Identities=29% Similarity=0.303 Sum_probs=21.2
Q ss_pred EEEEEeCCCCcHHHHHHHHHhHHh
Q 035585 49 IVGVYGMGGIGKTTLVKEFARQAS 72 (183)
Q Consensus 49 ~v~i~G~~G~GKTtL~~~~~~~~~ 72 (183)
+++|+|++|+||||+++.++.++.
T Consensus 1 ~i~i~G~pGsGKst~a~~la~~~~ 24 (183)
T TIGR01359 1 VVFVLGGPGSGKGTQCAKIVENFG 24 (183)
T ss_pred CEEEECCCCCCHHHHHHHHHHHcC
Confidence 478999999999999999988753
No 479
>TIGR01846 type_I_sec_HlyB type I secretion system ABC transporter, HlyB family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion.
Probab=97.85 E-value=7.2e-05 Score=64.92 Aligned_cols=28 Identities=32% Similarity=0.471 Sum_probs=23.9
Q ss_pred CCccEEEEEeCCCCcHHHHHHHHHhHHh
Q 035585 45 VNVNIVGVYGMGGIGKTTLVKEFARQAS 72 (183)
Q Consensus 45 ~~~~~v~i~G~~G~GKTtL~~~~~~~~~ 72 (183)
.+...++|+|++|+|||||++.+...+.
T Consensus 481 ~~G~~vaivG~sGsGKSTL~~ll~g~~~ 508 (694)
T TIGR01846 481 KPGEFIGIVGPSGSGKSTLTKLLQRLYT 508 (694)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence 3457899999999999999999987654
No 480
>TIGR01420 pilT_fam pilus retraction protein PilT. This model represents the PilT subfamily of proteins related to GspE, a protein involved in type II secretion (also called the General Secretion Pathway). PilT is an apparent cytosolic ATPase associated with type IV pilus systems. It is not required for pilin biogenesis, but is required for twitching motility and social gliding behaviors, shown in some species, powered by pilus retraction. Members of this family may be found in some species that type IV pili but have related structures for DNA uptake and natural transformation.
Probab=97.85 E-value=2.3e-05 Score=62.32 Aligned_cols=113 Identities=9% Similarity=0.092 Sum_probs=59.2
Q ss_pred CccEEEEEeCCCCcHHHHHHHHHhHHhhhhcccceEEEEecCCcCHHH-HHHHHHHHhCCCchhHHHHHHHHHHHHHHhc
Q 035585 46 NVNIVGVYGMGGIGKTTLVKEFARQASEEKLFDQVVFSEVSQTPDIKK-IHGEIAEKLGLEFSEEAESRRASRLYERLKK 124 (183)
Q Consensus 46 ~~~~v~i~G~~G~GKTtL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~ 124 (183)
+..+++|+|++|+||||+++.+...+... ....++ .+........ -...+..+...... .............
T Consensus 121 ~~g~ili~G~tGSGKTT~l~al~~~i~~~--~~~~i~-tiEdp~E~~~~~~~~~i~q~evg~~----~~~~~~~l~~~lr 193 (343)
T TIGR01420 121 PRGLILVTGPTGSGKSTTLASMIDYINKN--AAGHII-TIEDPIEYVHRNKRSLINQREVGLD----TLSFANALRAALR 193 (343)
T ss_pred cCcEEEEECCCCCCHHHHHHHHHHhhCcC--CCCEEE-EEcCChhhhccCccceEEccccCCC----CcCHHHHHHHhhc
Confidence 45799999999999999999988766532 222222 1222111100 00000000001100 0112333333333
Q ss_pred CCeEEEEEeCCCCcccccccCcCCCCCCCCcEEEEEecChHHHh
Q 035585 125 EKMILVILDNIWKYLDLETVGIPFGDDHRGCKLLLTARDCNVLL 168 (183)
Q Consensus 125 ~~~~llvlD~~~~~~~~~~l~~~~~~~~~~~~iiitsr~~~~~~ 168 (183)
..+-+|++||+.+......... ....|..++.|.|..+...
T Consensus 194 ~~pd~i~vgEird~~~~~~~l~---aa~tGh~v~~T~Ha~~~~~ 234 (343)
T TIGR01420 194 EDPDVILIGEMRDLETVELALT---AAETGHLVFGTLHTNSAAQ 234 (343)
T ss_pred cCCCEEEEeCCCCHHHHHHHHH---HHHcCCcEEEEEcCCCHHH
Confidence 8899999999986654433222 2233556888888766554
No 481
>PF03215 Rad17: Rad17 cell cycle checkpoint protein
Probab=97.85 E-value=2.8e-05 Score=64.88 Aligned_cols=61 Identities=21% Similarity=0.177 Sum_probs=46.2
Q ss_pred cchhhhhhcCCCcccccchHHHHHHHHHHhc-----cCCccEEEEEeCCCCcHHHHHHHHHhHHhh
Q 035585 13 IAEEVWLKSNKGYEAFKSRLSTLKSIQDALT-----DVNVNIVGVYGMGGIGKTTLVKEFARQASE 73 (183)
Q Consensus 13 ~~~~~~~~~~~~~~~~~gR~~~l~~l~~~l~-----~~~~~~v~i~G~~G~GKTtL~~~~~~~~~~ 73 (183)
..++.....|.....+.-..+-++++.+|+. ..+.++++|+||+|+||||.++.+++.+..
T Consensus 6 ~~~W~~ky~P~~~~eLavhkkKv~eV~~wl~~~~~~~~~~~iLlLtGP~G~GKtttv~~La~elg~ 71 (519)
T PF03215_consen 6 SEPWVEKYAPKTLDELAVHKKKVEEVRSWLEEMFSGSSPKRILLLTGPSGCGKTTTVKVLAKELGF 71 (519)
T ss_pred cCccchhcCCCCHHHhhccHHHHHHHHHHHHHHhccCCCcceEEEECCCCCCHHHHHHHHHHHhCC
Confidence 3445555666666677767777778888876 234578999999999999999999988753
No 482
>PRK09452 potA putrescine/spermidine ABC transporter ATPase protein; Reviewed
Probab=97.84 E-value=2e-05 Score=63.33 Aligned_cols=27 Identities=30% Similarity=0.428 Sum_probs=23.3
Q ss_pred CccEEEEEeCCCCcHHHHHHHHHhHHh
Q 035585 46 NVNIVGVYGMGGIGKTTLVKEFARQAS 72 (183)
Q Consensus 46 ~~~~v~i~G~~G~GKTtL~~~~~~~~~ 72 (183)
...+++|.|++|+|||||++.++....
T Consensus 39 ~Ge~~~LlGpsGsGKSTLLr~IaGl~~ 65 (375)
T PRK09452 39 NGEFLTLLGPSGCGKTTVLRLIAGFET 65 (375)
T ss_pred CCCEEEEECCCCCcHHHHHHHHhCCCC
Confidence 447899999999999999999986554
No 483
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=97.84 E-value=2.6e-05 Score=68.05 Aligned_cols=25 Identities=20% Similarity=0.264 Sum_probs=22.2
Q ss_pred CccEEEEEeCCCCcHHHHHHHHHhH
Q 035585 46 NVNIVGVYGMGGIGKTTLVKEFARQ 70 (183)
Q Consensus 46 ~~~~v~i~G~~G~GKTtL~~~~~~~ 70 (183)
..+.++|+||+|.||||+++.+...
T Consensus 321 ~~~~liItGpNg~GKSTlLK~i~~~ 345 (771)
T TIGR01069 321 EKRVLAITGPNTGGKTVTLKTLGLL 345 (771)
T ss_pred CceEEEEECCCCCCchHHHHHHHHH
Confidence 3478999999999999999999766
No 484
>cd03289 ABCC_CFTR2 The CFTR subfamily domain 2. The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.
Probab=97.84 E-value=9.1e-05 Score=57.18 Aligned_cols=27 Identities=37% Similarity=0.529 Sum_probs=23.6
Q ss_pred CccEEEEEeCCCCcHHHHHHHHHhHHh
Q 035585 46 NVNIVGVYGMGGIGKTTLVKEFARQAS 72 (183)
Q Consensus 46 ~~~~v~i~G~~G~GKTtL~~~~~~~~~ 72 (183)
+...++|+|++|+|||||++.++..+.
T Consensus 29 ~Ge~~~IvG~nGsGKSTLl~~L~gl~~ 55 (275)
T cd03289 29 PGQRVGLLGRTGSGKSTLLSAFLRLLN 55 (275)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhhhcC
Confidence 457899999999999999999987654
No 485
>PRK10789 putative multidrug transporter membrane\ATP-binding components; Provisional
Probab=97.84 E-value=8.1e-05 Score=63.16 Aligned_cols=28 Identities=29% Similarity=0.453 Sum_probs=23.8
Q ss_pred CCccEEEEEeCCCCcHHHHHHHHHhHHh
Q 035585 45 VNVNIVGVYGMGGIGKTTLVKEFARQAS 72 (183)
Q Consensus 45 ~~~~~v~i~G~~G~GKTtL~~~~~~~~~ 72 (183)
.+...++|+|++|+|||||++.+...+.
T Consensus 339 ~~G~~~~ivG~sGsGKSTLl~ll~g~~~ 366 (569)
T PRK10789 339 KPGQMLGICGPTGSGKSTLLSLIQRHFD 366 (569)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhcccC
Confidence 3557899999999999999999986554
No 486
>KOG0066 consensus eIF2-interacting protein ABC50 (ABC superfamily) [Translation, ribosomal structure and biogenesis]
Probab=97.84 E-value=6e-05 Score=61.06 Aligned_cols=51 Identities=22% Similarity=0.096 Sum_probs=37.3
Q ss_pred CeEEEEEeCCCCcccccccCcCCCC-CCCCcEEEEEecChHHHhhcCCCCcc
Q 035585 126 KMILVILDNIWKYLDLETVGIPFGD-DHRGCKLLLTARDCNVLLNMSLCRSE 176 (183)
Q Consensus 126 ~~~llvlD~~~~~~~~~~l~~~~~~-~~~~~~iiitsr~~~~~~~~~~~~~~ 176 (183)
.+.||.||+..++.+++...+.-+- ....-.++|+|||..++..+++..++
T Consensus 430 EPTLLMLDEPTNHLDLNAVIWLdNYLQgWkKTLLIVSHDQgFLD~VCtdIIH 481 (807)
T KOG0066|consen 430 EPTLLMLDEPTNHLDLNAVIWLDNYLQGWKKTLLIVSHDQGFLDSVCTDIIH 481 (807)
T ss_pred CceeeeecCCccccccceeeehhhHHhhhhheeEEEecccchHHHHHHHHhh
Confidence 5679999999988887766443221 12244699999999999988876554
No 487
>COG0563 Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism]
Probab=97.84 E-value=8e-05 Score=53.74 Aligned_cols=24 Identities=33% Similarity=0.527 Sum_probs=21.4
Q ss_pred EEEEEeCCCCcHHHHHHHHHhHHh
Q 035585 49 IVGVYGMGGIGKTTLVKEFARQAS 72 (183)
Q Consensus 49 ~v~i~G~~G~GKTtL~~~~~~~~~ 72 (183)
.+.|.|++|+||||+|+.+.+++.
T Consensus 2 riiilG~pGaGK~T~A~~La~~~~ 25 (178)
T COG0563 2 RILILGPPGAGKSTLAKKLAKKLG 25 (178)
T ss_pred eEEEECCCCCCHHHHHHHHHHHhC
Confidence 378999999999999999999854
No 488
>PRK10790 putative multidrug transporter membrane\ATP-binding components; Provisional
Probab=97.84 E-value=2.9e-05 Score=66.07 Aligned_cols=29 Identities=24% Similarity=0.247 Sum_probs=24.5
Q ss_pred CCccEEEEEeCCCCcHHHHHHHHHhHHhh
Q 035585 45 VNVNIVGVYGMGGIGKTTLVKEFARQASE 73 (183)
Q Consensus 45 ~~~~~v~i~G~~G~GKTtL~~~~~~~~~~ 73 (183)
.+...++|+|++|+|||||++.+...+..
T Consensus 365 ~~Ge~iaIvG~SGsGKSTLl~lL~gl~~p 393 (592)
T PRK10790 365 PSRGFVALVGHTGSGKSTLASLLMGYYPL 393 (592)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcccCC
Confidence 35578999999999999999999876643
No 489
>PRK14252 phosphate ABC transporter ATP-binding protein; Provisional
Probab=97.84 E-value=0.0001 Score=56.55 Aligned_cols=26 Identities=27% Similarity=0.534 Sum_probs=22.9
Q ss_pred CccEEEEEeCCCCcHHHHHHHHHhHH
Q 035585 46 NVNIVGVYGMGGIGKTTLVKEFARQA 71 (183)
Q Consensus 46 ~~~~v~i~G~~G~GKTtL~~~~~~~~ 71 (183)
+...++|+|++|+|||||++.+....
T Consensus 41 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 66 (265)
T PRK14252 41 EKQVTALIGPSGCGKSTFLRCFNRMH 66 (265)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhccc
Confidence 45789999999999999999998654
No 490
>PRK10851 sulfate/thiosulfate transporter subunit; Provisional
Probab=97.84 E-value=1.9e-05 Score=63.05 Aligned_cols=27 Identities=33% Similarity=0.459 Sum_probs=23.4
Q ss_pred CccEEEEEeCCCCcHHHHHHHHHhHHh
Q 035585 46 NVNIVGVYGMGGIGKTTLVKEFARQAS 72 (183)
Q Consensus 46 ~~~~v~i~G~~G~GKTtL~~~~~~~~~ 72 (183)
+...++|.|++|+|||||++.++....
T Consensus 27 ~Ge~~~llGpsGsGKSTLLr~IaGl~~ 53 (353)
T PRK10851 27 SGQMVALLGPSGSGKTTLLRIIAGLEH 53 (353)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 457899999999999999999987553
No 491
>PRK11432 fbpC ferric transporter ATP-binding subunit; Provisional
Probab=97.84 E-value=1.7e-05 Score=63.33 Aligned_cols=27 Identities=30% Similarity=0.407 Sum_probs=23.3
Q ss_pred CccEEEEEeCCCCcHHHHHHHHHhHHh
Q 035585 46 NVNIVGVYGMGGIGKTTLVKEFARQAS 72 (183)
Q Consensus 46 ~~~~v~i~G~~G~GKTtL~~~~~~~~~ 72 (183)
....++|.|++|+|||||++.++....
T Consensus 31 ~Ge~~~llGpsGsGKSTLLr~IaGl~~ 57 (351)
T PRK11432 31 QGTMVTLLGPSGCGKTTVLRLVAGLEK 57 (351)
T ss_pred CCCEEEEECCCCCcHHHHHHHHHCCCC
Confidence 447899999999999999999986554
No 492
>PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional
Probab=97.84 E-value=5.2e-05 Score=63.46 Aligned_cols=26 Identities=27% Similarity=0.431 Sum_probs=22.8
Q ss_pred CccEEEEEeCCCCcHHHHHHHHHhHH
Q 035585 46 NVNIVGVYGMGGIGKTTLVKEFARQA 71 (183)
Q Consensus 46 ~~~~v~i~G~~G~GKTtL~~~~~~~~ 71 (183)
+..+++|.|++|+|||||++.++...
T Consensus 288 ~Ge~~~l~G~NGsGKSTLl~~i~Gl~ 313 (510)
T PRK15439 288 AGEILGLAGVVGAGRTELAETLYGLR 313 (510)
T ss_pred CCcEEEEECCCCCCHHHHHHHHcCCC
Confidence 45689999999999999999998654
No 493
>TIGR01842 type_I_sec_PrtD type I secretion system ABC transporter, PrtD family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion.
Probab=97.83 E-value=7.2e-05 Score=63.13 Aligned_cols=28 Identities=21% Similarity=0.262 Sum_probs=24.1
Q ss_pred CCccEEEEEeCCCCcHHHHHHHHHhHHh
Q 035585 45 VNVNIVGVYGMGGIGKTTLVKEFARQAS 72 (183)
Q Consensus 45 ~~~~~v~i~G~~G~GKTtL~~~~~~~~~ 72 (183)
.+...++|+|++|+|||||++.+...+.
T Consensus 342 ~~G~~~~ivG~sGsGKSTL~~ll~g~~~ 369 (544)
T TIGR01842 342 QAGEALAIIGPSGSGKSTLARLIVGIWP 369 (544)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 3557899999999999999999987654
No 494
>PRK09700 D-allose transporter ATP-binding protein; Provisional
Probab=97.83 E-value=0.00012 Score=61.33 Aligned_cols=26 Identities=27% Similarity=0.400 Sum_probs=22.7
Q ss_pred CccEEEEEeCCCCcHHHHHHHHHhHH
Q 035585 46 NVNIVGVYGMGGIGKTTLVKEFARQA 71 (183)
Q Consensus 46 ~~~~v~i~G~~G~GKTtL~~~~~~~~ 71 (183)
+..+++|+|++|+|||||++.++...
T Consensus 288 ~Ge~~~l~G~NGsGKSTLlk~i~Gl~ 313 (510)
T PRK09700 288 RGEILGFAGLVGSGRTELMNCLFGVD 313 (510)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 45789999999999999999998654
No 495
>COG0444 DppD ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=97.83 E-value=0.00018 Score=55.84 Aligned_cols=48 Identities=21% Similarity=0.221 Sum_probs=32.8
Q ss_pred cCCeEEEEEeCCCCccc------ccccCcCCCCCCCCcEEEEEecChHHHhhcCC
Q 035585 124 KEKMILVILDNIWKYLD------LETVGIPFGDDHRGCKLLLTARDCNVLLNMSL 172 (183)
Q Consensus 124 ~~~~~llvlD~~~~~~~------~~~l~~~~~~~~~~~~iiitsr~~~~~~~~~~ 172 (183)
...+-|||-||.....+ +-.++..+.. ..|+.+|+.|||-.++..+..
T Consensus 169 a~~P~LlIADEPTTALDvt~QaqIl~Ll~~l~~-e~~~aiilITHDl~vva~~aD 222 (316)
T COG0444 169 ALNPKLLIADEPTTALDVTVQAQILDLLKELQR-EKGTALILITHDLGVVAEIAD 222 (316)
T ss_pred hCCCCEEEeCCCcchhhHHHHHHHHHHHHHHHH-hcCCEEEEEeCCHHHHHHhcc
Confidence 37788999999876543 1122222222 458889999999999886655
No 496
>PRK08699 DNA polymerase III subunit delta'; Validated
Probab=97.83 E-value=0.00024 Score=56.13 Aligned_cols=38 Identities=24% Similarity=0.238 Sum_probs=27.8
Q ss_pred HHHHHHHHhccCCccEEEEEeCCCCcHHHHHHHHHhHHh
Q 035585 34 TLKSIQDALTDVNVNIVGVYGMGGIGKTTLVKEFARQAS 72 (183)
Q Consensus 34 ~l~~l~~~l~~~~~~~v~i~G~~G~GKTtL~~~~~~~~~ 72 (183)
....+.... +.-++.++++|+.|+|||++|+.++..+-
T Consensus 9 ~w~~l~~~~-~r~~hA~Lf~G~~G~GK~~la~~~a~~ll 46 (325)
T PRK08699 9 QWRQIAEHW-ERRPNAWLFAGKKGIGKTAFARFAAQALL 46 (325)
T ss_pred HHHHHHHhc-CCcceEEEeECCCCCCHHHHHHHHHHHHc
Confidence 344444442 23346789999999999999999988764
No 497
>KOG0651 consensus 26S proteasome regulatory complex, ATPase RPT4 [Posttranslational modification, protein turnover, chaperones]
Probab=97.83 E-value=6.2e-05 Score=58.21 Aligned_cols=72 Identities=19% Similarity=0.271 Sum_probs=48.0
Q ss_pred CccEEEEEeCCCCcHHHHHHHHHhHHhhhhcccceEEEEecCCcCHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHHhcC
Q 035585 46 NVNIVGVYGMGGIGKTTLVKEFARQASEEKLFDQVVFSEVSQTPDIKKIHGEIAEKLGLEFSEEAESRRASRLYERLKKE 125 (183)
Q Consensus 46 ~~~~v~i~G~~G~GKTtL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~ 125 (183)
.+..++|||++|.|||.+++.++..+... | +-++. ..+.+... ......++..+.+.+..
T Consensus 165 ~Pkg~ll~GppGtGKTlla~~Vaa~mg~n--f-----l~v~s--------s~lv~kyi-----GEsaRlIRemf~yA~~~ 224 (388)
T KOG0651|consen 165 PPKGLLLYGPPGTGKTLLARAVAATMGVN--F-----LKVVS--------SALVDKYI-----GESARLIRDMFRYAREV 224 (388)
T ss_pred CCceeEEeCCCCCchhHHHHHHHHhcCCc--e-----EEeeH--------hhhhhhhc-----ccHHHHHHHHHHHHhhh
Confidence 45679999999999999999999988765 2 11111 11211111 12344556677777767
Q ss_pred CeEEEEEeCCCC
Q 035585 126 KMILVILDNIWK 137 (183)
Q Consensus 126 ~~~llvlD~~~~ 137 (183)
.+.+|.+||+|-
T Consensus 225 ~pciifmdeiDA 236 (388)
T KOG0651|consen 225 IPCIIFMDEIDA 236 (388)
T ss_pred CceEEeehhhhh
Confidence 789999999873
No 498
>COG0593 DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair]
Probab=97.83 E-value=4.3e-05 Score=61.61 Aligned_cols=29 Identities=31% Similarity=0.466 Sum_probs=26.3
Q ss_pred CccEEEEEeCCCCcHHHHHHHHHhHHhhh
Q 035585 46 NVNIVGVYGMGGIGKTTLVKEFARQASEE 74 (183)
Q Consensus 46 ~~~~v~i~G~~G~GKTtL~~~~~~~~~~~ 74 (183)
....+.|||+.|+|||.|+.++.+.....
T Consensus 112 ~~nplfi~G~~GlGKTHLl~Aign~~~~~ 140 (408)
T COG0593 112 AYNPLFIYGGVGLGKTHLLQAIGNEALAN 140 (408)
T ss_pred cCCcEEEECCCCCCHHHHHHHHHHHHHhh
Confidence 46789999999999999999999988775
No 499
>PRK14246 phosphate ABC transporter ATP-binding protein; Provisional
Probab=97.83 E-value=0.00013 Score=55.78 Aligned_cols=27 Identities=41% Similarity=0.625 Sum_probs=23.3
Q ss_pred CccEEEEEeCCCCcHHHHHHHHHhHHh
Q 035585 46 NVNIVGVYGMGGIGKTTLVKEFARQAS 72 (183)
Q Consensus 46 ~~~~v~i~G~~G~GKTtL~~~~~~~~~ 72 (183)
+...++|.|++|+|||||++.+.....
T Consensus 35 ~Ge~~~i~G~nGsGKSTLl~~iaG~~~ 61 (257)
T PRK14246 35 NNSIFGIMGPSGSGKSTLLKVLNRLIE 61 (257)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 457899999999999999999986543
No 500
>PRK10867 signal recognition particle protein; Provisional
Probab=97.83 E-value=0.0002 Score=58.56 Aligned_cols=57 Identities=19% Similarity=0.317 Sum_probs=36.5
Q ss_pred CccEEEEEeCCCCcHHHHHHHHHhHHhhhhcccceEEEEecCC-cCHHHHHHHHHHHhC
Q 035585 46 NVNIVGVYGMGGIGKTTLVKEFARQASEEKLFDQVVFSEVSQT-PDIKKIHGEIAEKLG 103 (183)
Q Consensus 46 ~~~~v~i~G~~G~GKTtL~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~i~~~l~ 103 (183)
++.++.++|++|+||||++..++..+... ....+..+++... +...+.+...++..+
T Consensus 99 ~p~vI~~vG~~GsGKTTtaakLA~~l~~~-~G~kV~lV~~D~~R~aa~eQL~~~a~~~g 156 (433)
T PRK10867 99 PPTVIMMVGLQGAGKTTTAGKLAKYLKKK-KKKKVLLVAADVYRPAAIEQLKTLGEQIG 156 (433)
T ss_pred CCEEEEEECCCCCcHHHHHHHHHHHHHHh-cCCcEEEEEccccchHHHHHHHHHHhhcC
Confidence 36789999999999999999998877654 1223555555433 222333444455544
Done!