Query 035585
Match_columns 183
No_of_seqs 111 out of 1283
Neff 9.7
Searched_HMMs 29240
Date Mon Mar 25 06:37:32 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/035585.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/035585hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2a5y_B CED-4; apoptosis; HET: 99.8 1.6E-20 5.5E-25 155.9 11.8 136 29-171 131-282 (549)
2 3sfz_A APAF-1, apoptotic pepti 99.8 1.9E-18 6.5E-23 154.0 12.1 141 21-168 119-271 (1249)
3 1vt4_I APAF-1 related killer D 99.8 1E-18 3.4E-23 151.6 9.5 135 27-168 129-279 (1221)
4 1z6t_A APAF-1, apoptotic prote 99.8 5.5E-18 1.9E-22 141.5 13.4 142 21-169 119-272 (591)
5 2qen_A Walker-type ATPase; unk 99.5 2.6E-14 8.8E-19 111.5 7.9 142 18-168 4-178 (350)
6 1w5s_A Origin recognition comp 99.5 9.2E-14 3.2E-18 110.8 10.4 144 24-167 20-192 (412)
7 2qby_A CDC6 homolog 1, cell di 99.5 7.8E-14 2.7E-18 110.0 9.4 146 23-168 17-177 (386)
8 2qby_B CDC6 homolog 3, cell di 99.5 1.6E-13 5.4E-18 108.6 10.1 138 26-165 20-175 (384)
9 2v1u_A Cell division control p 99.5 2.3E-13 8E-18 107.4 10.6 142 23-164 16-177 (387)
10 1fnn_A CDC6P, cell division co 99.5 5.8E-13 2E-17 105.4 12.7 144 24-168 15-173 (389)
11 2fna_A Conserved hypothetical 99.4 3E-13 1E-17 105.6 8.9 142 18-168 5-184 (357)
12 2chg_A Replication factor C sm 99.4 1.1E-12 3.7E-17 95.6 11.2 133 16-165 7-143 (226)
13 3te6_A Regulatory protein SIR3 99.4 1.4E-12 4.7E-17 101.0 9.5 113 28-140 22-146 (318)
14 1njg_A DNA polymerase III subu 99.3 8E-12 2.7E-16 92.0 10.5 143 16-165 13-167 (250)
15 1jbk_A CLPB protein; beta barr 99.3 2.3E-11 7.9E-16 86.5 11.1 106 20-138 16-127 (195)
16 1sxj_B Activator 1 37 kDa subu 99.3 8E-12 2.7E-16 96.4 7.8 133 16-165 11-148 (323)
17 1iqp_A RFCS; clamp loader, ext 99.2 2.7E-11 9.1E-16 93.6 7.6 133 16-165 15-151 (327)
18 2p65_A Hypothetical protein PF 99.2 1.5E-10 5.1E-15 82.1 9.6 54 20-73 16-69 (187)
19 2chq_A Replication factor C sm 99.2 8E-11 2.7E-15 90.6 8.5 131 18-165 9-143 (319)
20 3h4m_A Proteasome-activating n 99.0 6.8E-10 2.3E-14 84.4 7.7 98 21-138 12-122 (285)
21 1jr3_A DNA polymerase III subu 99.0 9.7E-10 3.3E-14 86.4 8.7 56 18-73 8-64 (373)
22 1sxj_D Activator 1 41 kDa subu 99.0 3.5E-10 1.2E-14 88.4 5.8 144 16-164 27-173 (353)
23 3pvs_A Replication-associated 99.0 4.2E-09 1.4E-13 85.3 11.6 66 8-73 8-76 (447)
24 3n70_A Transport activator; si 99.0 2.4E-10 8.3E-15 78.7 3.4 110 27-163 2-115 (145)
25 1d2n_A N-ethylmaleimide-sensit 99.0 1.2E-08 4E-13 77.2 12.6 125 26-169 33-182 (272)
26 3u61_B DNA polymerase accessor 99.0 1.1E-09 3.7E-14 84.8 6.8 129 14-165 14-147 (324)
27 1sxj_E Activator 1 40 kDa subu 98.9 1.5E-09 5.1E-14 85.0 7.2 53 19-71 7-60 (354)
28 2qz4_A Paraplegin; AAA+, SPG7, 98.9 7.5E-09 2.6E-13 77.5 10.5 95 24-138 4-110 (262)
29 1sxj_C Activator 1 40 kDa subu 98.9 2.8E-09 9.7E-14 83.2 7.8 133 15-164 14-150 (340)
30 3eie_A Vacuolar protein sortin 98.9 6.2E-09 2.1E-13 80.7 9.6 99 20-138 12-122 (322)
31 3syl_A Protein CBBX; photosynt 98.9 4.7E-09 1.6E-13 80.6 8.4 48 27-74 32-94 (309)
32 3ec2_A DNA replication protein 98.9 2.5E-09 8.4E-14 76.0 6.2 117 31-164 19-143 (180)
33 3vfd_A Spastin; ATPase, microt 98.9 9.8E-09 3.3E-13 81.6 9.3 98 21-138 110-219 (389)
34 3d8b_A Fidgetin-like protein 1 98.9 1.5E-08 5.2E-13 79.7 10.1 98 21-138 79-188 (357)
35 1qvr_A CLPB protein; coiled co 98.8 1.4E-08 4.9E-13 88.2 9.6 105 22-139 166-276 (854)
36 1xwi_A SKD1 protein; VPS4B, AA 98.8 4.5E-08 1.5E-12 76.0 10.7 98 22-138 8-117 (322)
37 2z4s_A Chromosomal replication 98.8 1.5E-08 5E-13 82.0 7.9 125 24-163 103-236 (440)
38 3b9p_A CG5977-PA, isoform A; A 98.8 5.1E-08 1.7E-12 74.5 10.4 98 21-138 16-125 (297)
39 1sxj_A Activator 1 95 kDa subu 98.8 1.1E-08 3.6E-13 84.4 6.8 71 15-90 28-115 (516)
40 3pfi_A Holliday junction ATP-d 98.8 3.3E-08 1.1E-12 76.9 9.2 54 19-72 22-80 (338)
41 2qp9_X Vacuolar protein sortin 98.8 2.5E-08 8.5E-13 78.4 8.1 99 20-138 45-155 (355)
42 3pxg_A Negative regulator of g 98.7 4.3E-08 1.5E-12 79.8 9.7 50 24-73 178-227 (468)
43 2zan_A Vacuolar protein sortin 98.7 8.2E-08 2.8E-12 77.7 11.0 99 21-138 129-239 (444)
44 1hqc_A RUVB; extended AAA-ATPa 98.7 2.7E-08 9.2E-13 76.8 7.8 52 21-72 7-63 (324)
45 1r6b_X CLPA protein; AAA+, N-t 98.7 1.6E-07 5.3E-12 80.7 12.1 103 23-138 183-290 (758)
46 4fcw_A Chaperone protein CLPB; 98.7 1.1E-08 3.7E-13 78.6 4.3 106 26-138 17-131 (311)
47 3uk6_A RUVB-like 2; hexameric 98.7 1.1E-07 3.6E-12 74.7 10.0 49 25-73 43-96 (368)
48 4b4t_J 26S protease regulatory 98.7 1E-07 3.5E-12 75.8 9.9 96 23-138 145-253 (405)
49 1a5t_A Delta prime, HOLB; zinc 98.7 1.2E-07 3.9E-12 74.0 9.7 118 30-165 6-149 (334)
50 3co5_A Putative two-component 98.7 1.4E-09 4.8E-14 74.7 -1.3 47 26-72 4-52 (143)
51 2gno_A DNA polymerase III, gam 98.7 9.3E-08 3.2E-12 73.7 8.6 117 31-164 2-122 (305)
52 4b4t_L 26S protease subunit RP 98.7 1.8E-07 6.2E-12 75.3 10.5 95 24-138 179-286 (437)
53 3cf0_A Transitional endoplasmi 98.6 2.6E-07 8.8E-12 70.9 10.9 98 21-138 10-120 (301)
54 2w58_A DNAI, primosome compone 98.6 1.7E-07 5.7E-12 67.6 9.0 53 32-86 35-91 (202)
55 3pxi_A Negative regulator of g 98.6 1.7E-07 5.8E-12 80.5 9.9 51 23-73 177-227 (758)
56 4b4t_M 26S protease regulatory 98.6 1.3E-07 4.5E-12 76.0 8.5 98 21-138 176-286 (434)
57 2bjv_A PSP operon transcriptio 98.6 1.7E-08 5.8E-13 76.0 2.8 61 26-88 6-68 (265)
58 4b4t_K 26S protease regulatory 98.6 2.8E-07 9.7E-12 74.0 9.4 94 24-137 170-276 (428)
59 2w0m_A SSO2452; RECA, SSPF, un 98.6 2E-07 6.8E-12 68.2 7.8 40 46-87 22-61 (235)
60 2ce7_A Cell division protein F 98.6 2.3E-07 7.9E-12 75.5 8.7 95 24-138 14-120 (476)
61 4b4t_I 26S protease regulatory 98.6 3E-07 1E-11 73.5 9.1 98 21-138 177-287 (437)
62 4b4t_H 26S protease regulatory 98.5 4.2E-07 1.4E-11 73.4 9.6 95 24-138 207-314 (467)
63 1l8q_A Chromosomal replication 98.5 4.1E-07 1.4E-11 70.3 9.2 121 24-162 9-139 (324)
64 1ojl_A Transcriptional regulat 98.5 3.3E-08 1.1E-12 76.1 2.3 60 27-88 3-64 (304)
65 2r62_A Cell division protease 98.5 1.8E-08 6E-13 75.9 0.8 51 23-73 8-70 (268)
66 2ehv_A Hypothetical protein PH 98.5 1.6E-07 5.5E-12 69.6 5.9 39 46-86 29-68 (251)
67 1ofh_A ATP-dependent HSL prote 98.5 2.1E-07 7.1E-12 71.2 6.2 46 27-72 16-75 (310)
68 3t15_A Ribulose bisphosphate c 98.5 2.4E-07 8.2E-12 70.9 6.2 28 45-72 34-61 (293)
69 3bos_A Putative DNA replicatio 98.4 7.3E-07 2.5E-11 65.4 8.1 63 23-87 25-90 (242)
70 1lv7_A FTSH; alpha/beta domain 98.4 4.1E-07 1.4E-11 68.0 6.5 51 22-72 8-70 (257)
71 3m6a_A ATP-dependent protease 98.4 1.3E-06 4.4E-11 72.4 9.9 46 28-73 83-134 (543)
72 2c9o_A RUVB-like 1; hexameric 98.4 4.7E-07 1.6E-11 73.4 7.1 96 24-138 35-138 (456)
73 3hu3_A Transitional endoplasmi 98.4 2.4E-06 8.3E-11 69.8 10.8 96 23-138 201-309 (489)
74 1qvr_A CLPB protein; coiled co 98.4 2.3E-07 7.9E-12 80.7 4.8 61 26-88 558-627 (854)
75 2pze_A Cystic fibrosis transme 98.4 3E-06 1E-10 62.6 9.6 28 46-73 33-60 (229)
76 4gp7_A Metallophosphoesterase; 98.4 1E-06 3.4E-11 62.1 6.7 22 46-67 8-29 (171)
77 2kjq_A DNAA-related protein; s 98.3 9.9E-07 3.4E-11 60.8 6.3 40 46-87 35-74 (149)
78 3pxi_A Negative regulator of g 98.3 2.7E-07 9.3E-12 79.3 4.0 60 26-87 491-559 (758)
79 1n0w_A DNA repair protein RAD5 98.3 9.6E-06 3.3E-10 59.7 11.9 92 46-138 23-131 (243)
80 3cf2_A TER ATPase, transitiona 98.3 8E-07 2.7E-11 76.4 6.4 74 45-138 236-309 (806)
81 2cvh_A DNA repair and recombin 98.3 1E-05 3.5E-10 58.6 11.5 41 46-91 19-59 (220)
82 2cbz_A Multidrug resistance-as 98.3 1.4E-06 4.7E-11 64.7 6.7 28 46-73 30-57 (237)
83 2pjz_A Hypothetical protein ST 98.3 2.5E-06 8.6E-11 64.3 7.9 25 47-71 30-54 (263)
84 2x8a_A Nuclear valosin-contain 98.3 6.3E-06 2.2E-10 62.4 10.1 71 48-138 45-115 (274)
85 3hr8_A Protein RECA; alpha and 98.3 8.8E-06 3E-10 63.9 11.1 86 46-138 60-151 (356)
86 2qgz_A Helicase loader, putati 98.3 2E-06 7E-11 66.2 7.2 54 31-86 133-190 (308)
87 2nq2_C Hypothetical ABC transp 98.3 6.6E-07 2.3E-11 67.1 4.2 27 46-72 30-56 (253)
88 1vpl_A ABC transporter, ATP-bi 98.3 3.5E-06 1.2E-10 63.2 8.1 26 46-71 40-65 (256)
89 4g1u_C Hemin import ATP-bindin 98.2 1.4E-06 4.9E-11 65.7 5.7 26 46-71 36-61 (266)
90 2yz2_A Putative ABC transporte 98.2 2.7E-06 9.3E-11 64.2 7.2 26 46-71 32-57 (266)
91 3gfo_A Cobalt import ATP-bindi 98.2 6.7E-07 2.3E-11 67.9 3.6 26 46-71 33-58 (275)
92 4a74_A DNA repair and recombin 98.2 2.6E-05 8.9E-10 56.8 12.1 92 46-138 24-137 (231)
93 2b8t_A Thymidine kinase; deoxy 98.2 1.7E-07 5.7E-12 69.0 0.2 113 45-165 10-127 (223)
94 1ixz_A ATP-dependent metallopr 98.2 7.3E-06 2.5E-10 61.1 9.2 51 22-72 12-74 (254)
95 1r6b_X CLPA protein; AAA+, N-t 98.2 1.2E-06 4E-11 75.3 5.4 103 26-138 458-569 (758)
96 3tui_C Methionine import ATP-b 98.2 7.1E-07 2.4E-11 70.2 3.4 51 124-174 179-234 (366)
97 2olj_A Amino acid ABC transpor 98.2 5.1E-06 1.8E-10 62.6 8.0 27 46-72 49-75 (263)
98 1iy2_A ATP-dependent metallopr 98.2 4.1E-06 1.4E-10 63.3 7.4 52 21-72 35-98 (278)
99 2pcj_A ABC transporter, lipopr 98.2 2.1E-06 7.2E-11 63.2 5.6 26 46-71 29-54 (224)
100 2zr9_A Protein RECA, recombina 98.2 1.7E-05 5.7E-10 62.2 10.4 86 46-138 60-151 (349)
101 3hws_A ATP-dependent CLP prote 98.2 3.4E-06 1.2E-10 66.3 6.4 46 27-72 16-76 (363)
102 2bbs_A Cystic fibrosis transme 98.1 6.3E-06 2.1E-10 63.0 7.6 28 46-73 63-90 (290)
103 3io5_A Recombination and repai 98.1 2E-05 6.8E-10 60.8 10.3 86 48-138 29-123 (333)
104 1mv5_A LMRA, multidrug resista 98.1 3.3E-06 1.1E-10 62.9 5.9 26 46-71 27-52 (243)
105 3jvv_A Twitching mobility prot 98.1 4.5E-07 1.5E-11 71.3 1.2 115 45-168 121-235 (356)
106 2ixe_A Antigen peptide transpo 98.1 5E-06 1.7E-10 62.9 6.8 26 46-71 44-69 (271)
107 2dhr_A FTSH; AAA+ protein, hex 98.1 6.2E-06 2.1E-10 67.5 7.6 52 21-72 26-89 (499)
108 3lda_A DNA repair protein RAD5 98.1 3.4E-05 1.2E-09 61.5 11.7 92 46-138 177-285 (400)
109 2iw3_A Elongation factor 3A; a 98.1 6.2E-06 2.1E-10 72.2 7.9 125 46-174 460-615 (986)
110 1ypw_A Transitional endoplasmi 98.1 7.5E-06 2.6E-10 70.8 8.2 96 23-138 201-309 (806)
111 1um8_A ATP-dependent CLP prote 98.1 5.7E-06 2E-10 65.2 6.9 25 47-71 72-96 (376)
112 2vhj_A Ntpase P4, P4; non- hyd 98.1 6.2E-06 2.1E-10 63.7 6.7 70 47-138 123-194 (331)
113 1g5t_A COB(I)alamin adenosyltr 98.1 8.2E-06 2.8E-10 58.6 6.8 115 46-164 27-163 (196)
114 1in4_A RUVB, holliday junction 98.1 3.5E-06 1.2E-10 65.5 5.2 53 20-72 19-76 (334)
115 2z43_A DNA repair and recombin 98.0 6.5E-05 2.2E-09 58.1 11.7 92 46-138 106-215 (324)
116 1z47_A CYSA, putative ABC-tran 98.0 6.7E-06 2.3E-10 64.5 6.0 27 46-72 40-66 (355)
117 3j16_B RLI1P; ribosome recycli 98.0 2.4E-05 8.4E-10 65.5 9.5 26 46-71 102-127 (608)
118 3d31_A Sulfate/molybdate ABC t 98.0 5.6E-06 1.9E-10 64.8 5.3 27 46-72 25-51 (348)
119 1xp8_A RECA protein, recombina 98.0 5.1E-05 1.7E-09 59.8 10.7 86 46-138 73-164 (366)
120 1v5w_A DMC1, meiotic recombina 98.0 7E-05 2.4E-09 58.5 11.4 92 46-138 121-231 (343)
121 4eun_A Thermoresistant glucoki 98.0 6.4E-05 2.2E-09 53.9 10.3 27 45-71 27-53 (200)
122 1pzn_A RAD51, DNA repair and r 98.0 7.1E-05 2.4E-09 58.6 11.1 92 46-138 130-243 (349)
123 3ozx_A RNAse L inhibitor; ATP 98.0 8.9E-06 3.1E-10 67.3 6.2 26 46-71 24-49 (538)
124 2it1_A 362AA long hypothetical 98.0 9.5E-06 3.2E-10 63.8 6.0 27 46-72 28-54 (362)
125 1rz3_A Hypothetical protein rb 98.0 2.4E-05 8.3E-10 56.3 7.6 44 30-73 2-48 (201)
126 1u94_A RECA protein, recombina 98.0 6.3E-05 2.2E-09 59.0 10.2 86 46-138 62-153 (356)
127 3bk7_A ABC transporter ATP-bin 98.0 1.4E-05 4.8E-10 67.0 6.8 126 46-173 381-541 (607)
128 2dr3_A UPF0273 protein PH0284; 98.0 6.8E-05 2.3E-09 55.1 9.9 40 46-87 22-61 (247)
129 1vma_A Cell division protein F 98.0 5.4E-05 1.9E-09 58.2 9.5 89 46-137 103-197 (306)
130 3cf2_A TER ATPase, transitiona 97.9 1.5E-05 5.2E-10 68.6 6.8 92 27-138 478-582 (806)
131 3b5x_A Lipid A export ATP-bind 97.9 4.5E-05 1.5E-09 63.6 9.4 28 45-72 367-394 (582)
132 3c8u_A Fructokinase; YP_612366 97.9 1.4E-05 4.9E-10 57.8 5.6 41 33-73 6-48 (208)
133 3nh6_A ATP-binding cassette SU 97.9 3E-06 1E-10 65.2 2.0 27 46-72 79-105 (306)
134 1yqt_A RNAse L inhibitor; ATP- 97.9 2.2E-05 7.5E-10 64.9 7.1 127 46-174 311-472 (538)
135 1g8p_A Magnesium-chelatase 38 97.9 6.3E-06 2.2E-10 64.0 3.5 52 21-72 19-70 (350)
136 2i1q_A DNA repair and recombin 97.9 0.00011 3.9E-09 56.6 10.4 92 46-138 97-216 (322)
137 3dm5_A SRP54, signal recogniti 97.9 0.00016 5.4E-09 58.3 11.1 39 46-86 99-137 (443)
138 2px0_A Flagellar biosynthesis 97.8 6.2E-05 2.1E-09 57.6 8.1 87 46-135 104-191 (296)
139 1yqt_A RNAse L inhibitor; ATP- 97.8 1.2E-05 4.3E-10 66.4 4.3 48 124-173 174-227 (538)
140 1tf7_A KAIC; homohexamer, hexa 97.8 5.5E-05 1.9E-09 62.3 8.0 40 46-87 38-78 (525)
141 1ls1_A Signal recognition part 97.8 0.00014 4.7E-09 55.6 9.3 88 46-135 97-189 (295)
142 3ozx_A RNAse L inhibitor; ATP 97.8 2.6E-05 8.8E-10 64.5 5.5 127 46-174 293-456 (538)
143 3e70_C DPA, signal recognition 97.8 0.00016 5.6E-09 56.1 9.7 39 45-85 127-165 (328)
144 2r44_A Uncharacterized protein 97.8 1.9E-05 6.4E-10 61.1 4.3 50 21-72 22-71 (331)
145 3thx_A DNA mismatch repair pro 97.8 1.8E-05 6.3E-10 69.2 4.5 23 46-68 661-683 (934)
146 3bh0_A DNAB-like replicative h 97.8 0.00026 8.8E-09 54.6 10.4 51 32-86 55-105 (315)
147 3kl4_A SRP54, signal recogniti 97.7 0.00013 4.5E-09 58.6 8.8 39 46-86 96-134 (433)
148 3bk7_A ABC transporter ATP-bin 97.7 3.5E-05 1.2E-09 64.6 5.4 47 124-172 244-296 (607)
149 1j8m_F SRP54, signal recogniti 97.7 0.00043 1.5E-08 52.9 11.0 40 47-88 98-137 (297)
150 3asz_A Uridine kinase; cytidin 97.7 3E-05 1E-09 56.0 4.2 28 45-72 4-31 (211)
151 3kb2_A SPBC2 prophage-derived 97.7 2.6E-05 9E-10 54.2 3.7 25 48-72 2-26 (173)
152 1zp6_A Hypothetical protein AT 97.7 2.5E-05 8.7E-10 55.3 3.7 25 46-70 8-32 (191)
153 1kgd_A CASK, peripheral plasma 97.7 2.4E-05 8.3E-10 55.3 3.5 26 47-72 5-30 (180)
154 3tr0_A Guanylate kinase, GMP k 97.7 2.9E-05 9.8E-10 55.7 3.9 26 46-71 6-31 (205)
155 2yvu_A Probable adenylyl-sulfa 97.7 6.4E-05 2.2E-09 53.2 5.7 31 44-74 10-40 (186)
156 1sky_E F1-ATPase, F1-ATP synth 97.7 0.0004 1.4E-08 56.3 10.8 101 33-137 140-256 (473)
157 3uie_A Adenylyl-sulfate kinase 97.7 3.2E-05 1.1E-09 55.5 4.1 30 44-73 22-51 (200)
158 3cmu_A Protein RECA, recombina 97.7 0.00013 4.3E-09 68.2 8.8 84 45-136 1425-1515(2050)
159 3a00_A Guanylate kinase, GMP k 97.7 2.1E-05 7.1E-10 55.9 3.0 25 48-72 2-26 (186)
160 3tqc_A Pantothenate kinase; bi 97.7 0.0002 6.7E-09 55.4 8.6 28 46-73 91-118 (321)
161 3j16_B RLI1P; ribosome recycli 97.7 3.7E-05 1.3E-09 64.4 4.9 125 48-174 379-538 (608)
162 3umf_A Adenylate kinase; rossm 97.7 6E-05 2E-09 55.1 5.3 28 45-72 27-54 (217)
163 1qhx_A CPT, protein (chloramph 97.7 2.7E-05 9.3E-10 54.5 3.4 26 47-72 3-28 (178)
164 1ye8_A Protein THEP1, hypothet 97.7 3.3E-05 1.1E-09 54.7 3.8 24 49-72 2-25 (178)
165 3b60_A Lipid A export ATP-bind 97.7 3.7E-05 1.3E-09 64.2 4.6 27 46-72 368-394 (582)
166 2r6a_A DNAB helicase, replicat 97.7 0.00045 1.5E-08 55.9 10.8 41 46-87 202-242 (454)
167 3vaa_A Shikimate kinase, SK; s 97.7 3.7E-05 1.3E-09 55.1 4.0 27 46-72 24-50 (199)
168 1kag_A SKI, shikimate kinase I 97.6 2.8E-05 9.5E-10 54.2 3.2 25 48-72 5-29 (173)
169 3qf4_A ABC transporter, ATP-bi 97.6 9.4E-05 3.2E-09 61.8 6.8 27 46-72 368-394 (587)
170 3tau_A Guanylate kinase, GMP k 97.6 3.1E-05 1.1E-09 56.0 3.5 27 46-72 7-33 (208)
171 3llm_A ATP-dependent RNA helic 97.6 0.0003 1E-08 51.7 8.8 23 48-70 77-99 (235)
172 2iw3_A Elongation factor 3A; a 97.6 6.1E-05 2.1E-09 66.1 5.6 51 121-173 914-967 (986)
173 1lvg_A Guanylate kinase, GMP k 97.6 3.3E-05 1.1E-09 55.5 3.3 26 47-72 4-29 (198)
174 3nbx_X ATPase RAVA; AAA+ ATPas 97.6 4.4E-05 1.5E-09 62.6 4.3 45 26-72 22-66 (500)
175 2q6t_A DNAB replication FORK h 97.6 0.0006 2.1E-08 55.0 10.9 41 46-87 199-239 (444)
176 1knq_A Gluconate kinase; ALFA/ 97.6 5.3E-05 1.8E-09 53.0 4.1 26 46-71 7-32 (175)
177 2bbw_A Adenylate kinase 4, AK4 97.6 4.9E-05 1.7E-09 56.3 3.9 27 46-72 26-52 (246)
178 2rhm_A Putative kinase; P-loop 97.6 5.8E-05 2E-09 53.4 4.2 26 46-71 4-29 (193)
179 1htw_A HI0065; nucleotide-bind 97.6 5.2E-05 1.8E-09 52.6 3.8 27 45-71 31-57 (158)
180 3trf_A Shikimate kinase, SK; a 97.6 5E-05 1.7E-09 53.6 3.8 26 47-72 5-30 (185)
181 4f4c_A Multidrug resistance pr 97.6 3E-05 1E-09 70.4 3.2 27 46-72 1104-1130(1321)
182 3t61_A Gluconokinase; PSI-biol 97.6 4.1E-05 1.4E-09 54.9 3.4 26 47-72 18-43 (202)
183 1znw_A Guanylate kinase, GMP k 97.6 4.5E-05 1.5E-09 55.1 3.6 27 46-72 19-45 (207)
184 4a1f_A DNAB helicase, replicat 97.6 0.00039 1.3E-08 54.1 9.0 56 28-87 29-84 (338)
185 1zuh_A Shikimate kinase; alpha 97.6 5.3E-05 1.8E-09 52.6 3.7 27 46-72 6-32 (168)
186 2z0h_A DTMP kinase, thymidylat 97.6 0.0002 6.9E-09 50.8 6.8 26 49-74 2-27 (197)
187 2o8b_B DNA mismatch repair pro 97.6 0.00017 5.8E-09 63.8 7.6 24 47-71 789-812 (1022)
188 2j41_A Guanylate kinase; GMP, 97.6 4.7E-05 1.6E-09 54.5 3.5 26 46-71 5-30 (207)
189 1nks_A Adenylate kinase; therm 97.6 6.4E-05 2.2E-09 53.1 4.0 27 48-74 2-28 (194)
190 1ly1_A Polynucleotide kinase; 97.5 5.3E-05 1.8E-09 53.0 3.5 22 48-69 3-24 (181)
191 3thx_B DNA mismatch repair pro 97.5 3.9E-05 1.3E-09 67.1 3.3 24 46-69 672-695 (918)
192 1odf_A YGR205W, hypothetical 3 97.5 0.00014 4.8E-09 55.4 6.1 30 45-74 29-58 (290)
193 1gvn_B Zeta; postsegregational 97.5 0.0001 3.4E-09 56.1 5.3 27 45-71 31-57 (287)
194 3ux8_A Excinuclease ABC, A sub 97.5 0.00013 4.3E-09 61.9 6.4 41 127-169 223-269 (670)
195 2qor_A Guanylate kinase; phosp 97.5 4.4E-05 1.5E-09 54.9 3.1 27 46-72 11-37 (204)
196 3lw7_A Adenylate kinase relate 97.5 5E-05 1.7E-09 52.7 3.3 20 48-67 2-21 (179)
197 3upu_A ATP-dependent DNA helic 97.5 0.00029 9.9E-09 57.0 8.2 41 33-74 32-72 (459)
198 2fz4_A DNA repair protein RAD2 97.5 0.00034 1.2E-08 51.6 8.0 41 28-71 92-132 (237)
199 2yl4_A ATP-binding cassette SU 97.5 6.6E-05 2.3E-09 62.8 4.6 27 46-72 369-395 (595)
200 1kht_A Adenylate kinase; phosp 97.5 6.5E-05 2.2E-09 53.0 3.9 26 48-73 4-29 (192)
201 1wb9_A DNA mismatch repair pro 97.5 0.00011 3.7E-09 63.5 5.9 26 45-70 605-630 (800)
202 1s96_A Guanylate kinase, GMP k 97.5 5.8E-05 2E-09 55.2 3.6 27 46-72 15-41 (219)
203 1tue_A Replication protein E1; 97.5 0.00011 3.8E-09 53.1 4.9 41 33-73 43-84 (212)
204 3iij_A Coilin-interacting nucl 97.5 6.2E-05 2.1E-09 52.9 3.5 27 46-72 10-36 (180)
205 2yhs_A FTSY, cell division pro 97.5 0.00049 1.7E-08 56.1 9.1 29 46-74 292-320 (503)
206 2jeo_A Uridine-cytidine kinase 97.5 7.6E-05 2.6E-09 55.3 4.1 28 45-72 23-50 (245)
207 4a82_A Cystic fibrosis transme 97.5 3.5E-05 1.2E-09 64.3 2.4 28 45-72 365-392 (578)
208 2c95_A Adenylate kinase 1; tra 97.5 8.4E-05 2.9E-09 52.7 4.1 27 46-72 8-34 (196)
209 1rj9_A FTSY, signal recognitio 97.5 0.00013 4.4E-09 56.0 5.4 28 46-73 101-128 (304)
210 1xjc_A MOBB protein homolog; s 97.5 0.00012 4.1E-09 51.4 4.8 29 46-74 3-31 (169)
211 3fwy_A Light-independent proto 97.5 0.00019 6.4E-09 55.4 6.3 65 21-87 22-86 (314)
212 2j37_W Signal recognition part 97.5 0.0017 5.7E-08 53.2 12.2 29 46-74 100-128 (504)
213 1z6g_A Guanylate kinase; struc 97.5 5.6E-05 1.9E-09 55.2 3.2 26 46-71 22-47 (218)
214 3qf4_B Uncharacterized ABC tra 97.5 2.6E-05 9E-10 65.3 1.6 28 45-72 379-406 (598)
215 1tev_A UMP-CMP kinase; ploop, 97.5 7.8E-05 2.7E-09 52.8 3.8 26 47-72 3-28 (196)
216 1w36_D RECD, exodeoxyribonucle 97.5 8.8E-05 3E-09 62.2 4.6 48 47-94 164-212 (608)
217 2bdt_A BH3686; alpha-beta prot 97.5 6.9E-05 2.3E-09 53.1 3.5 22 48-69 3-24 (189)
218 2pbr_A DTMP kinase, thymidylat 97.5 0.00034 1.2E-08 49.4 7.1 25 49-73 2-26 (195)
219 3ney_A 55 kDa erythrocyte memb 97.5 7.1E-05 2.4E-09 53.9 3.5 28 45-72 17-44 (197)
220 3ld9_A DTMP kinase, thymidylat 97.5 0.0011 3.6E-08 48.6 9.8 57 42-100 16-74 (223)
221 2ze6_A Isopentenyl transferase 97.5 7.7E-05 2.6E-09 55.7 3.8 25 48-72 2-26 (253)
222 3cm0_A Adenylate kinase; ATP-b 97.5 8.4E-05 2.9E-09 52.4 3.8 26 47-72 4-29 (186)
223 3cmw_A Protein RECA, recombina 97.5 0.00044 1.5E-08 63.8 9.2 87 46-139 731-823 (1706)
224 3tlx_A Adenylate kinase 2; str 97.5 0.00021 7E-09 53.0 6.0 27 45-71 27-53 (243)
225 3aez_A Pantothenate kinase; tr 97.5 9E-05 3.1E-09 57.1 4.2 29 45-73 88-116 (312)
226 1cke_A CK, MSSA, protein (cyti 97.5 8.3E-05 2.8E-09 54.1 3.8 24 48-71 6-29 (227)
227 3b9q_A Chloroplast SRP recepto 97.5 0.00014 4.7E-09 55.8 5.1 28 46-73 99-126 (302)
228 2hf9_A Probable hydrogenase ni 97.5 0.00018 6.3E-09 52.2 5.6 41 33-73 24-64 (226)
229 2ffh_A Protein (FFH); SRP54, s 97.5 0.00085 2.9E-08 53.8 9.9 40 46-87 97-136 (425)
230 2eyu_A Twitching motility prot 97.5 0.00018 6.1E-09 54.0 5.6 112 45-168 23-137 (261)
231 3ice_A Transcription terminati 97.5 0.00016 5.5E-09 57.2 5.5 94 45-138 172-273 (422)
232 3k1j_A LON protease, ATP-depen 97.5 7.5E-05 2.6E-09 62.6 3.8 54 18-73 33-86 (604)
233 3tif_A Uncharacterized ABC tra 97.4 8E-05 2.7E-09 55.1 3.5 26 46-71 30-55 (235)
234 4f4c_A Multidrug resistance pr 97.4 0.00014 4.7E-09 66.1 5.6 28 45-72 442-469 (1321)
235 2bwj_A Adenylate kinase 5; pho 97.4 0.0001 3.5E-09 52.4 3.9 26 47-72 12-37 (199)
236 1sq5_A Pantothenate kinase; P- 97.4 0.00037 1.3E-08 53.5 7.1 28 45-72 78-105 (308)
237 1ex7_A Guanylate kinase; subst 97.4 7.1E-05 2.4E-09 53.4 2.9 26 48-73 2-27 (186)
238 2f1r_A Molybdopterin-guanine d 97.4 7.7E-05 2.6E-09 52.5 3.0 27 48-74 3-29 (171)
239 2plr_A DTMP kinase, probable t 97.4 0.00011 3.7E-09 52.7 3.9 28 47-74 4-31 (213)
240 1via_A Shikimate kinase; struc 97.4 9.5E-05 3.2E-09 51.7 3.5 25 48-72 5-29 (175)
241 2iyv_A Shikimate kinase, SK; t 97.4 8.5E-05 2.9E-09 52.3 3.2 25 48-72 3-27 (184)
242 2onk_A Molybdate/tungstate ABC 97.4 9.5E-05 3.2E-09 54.9 3.5 27 45-72 23-49 (240)
243 1y63_A LMAJ004144AAA protein; 97.4 0.00012 4E-09 51.8 3.9 25 46-70 9-33 (184)
244 1ukz_A Uridylate kinase; trans 97.4 0.00011 3.8E-09 52.6 3.8 26 46-71 14-39 (203)
245 1aky_A Adenylate kinase; ATP:A 97.4 0.00012 4.1E-09 53.2 3.9 27 46-72 3-29 (220)
246 2wwf_A Thymidilate kinase, put 97.4 0.00013 4.6E-09 52.4 4.2 28 47-74 10-37 (212)
247 1qf9_A UMP/CMP kinase, protein 97.4 0.00013 4.3E-09 51.6 3.9 26 47-72 6-31 (194)
248 2wsm_A Hydrogenase expression/ 97.4 0.00019 6.6E-09 51.9 5.0 42 32-73 15-56 (221)
249 2i3b_A HCR-ntpase, human cance 97.4 0.0001 3.4E-09 52.7 3.4 25 48-72 2-26 (189)
250 1cr0_A DNA primase/helicase; R 97.4 0.00025 8.6E-09 53.9 5.8 40 45-86 33-73 (296)
251 2jaq_A Deoxyguanosine kinase; 97.4 0.00012 4.1E-09 52.2 3.7 24 49-72 2-25 (205)
252 2xxa_A Signal recognition part 97.4 0.0012 4E-08 53.2 9.8 41 46-87 99-139 (433)
253 1nn5_A Similar to deoxythymidy 97.4 0.00015 5.2E-09 52.1 4.3 28 47-74 9-36 (215)
254 2qt1_A Nicotinamide riboside k 97.4 0.00011 3.6E-09 52.9 3.4 26 46-71 20-45 (207)
255 1g41_A Heat shock protein HSLU 97.4 0.00016 5.5E-09 58.3 4.7 47 27-73 16-76 (444)
256 3hjn_A DTMP kinase, thymidylat 97.4 0.0029 9.9E-08 45.3 10.9 51 49-101 2-52 (197)
257 2cdn_A Adenylate kinase; phosp 97.4 0.00015 5.1E-09 51.9 4.1 27 46-72 19-45 (201)
258 1q57_A DNA primase/helicase; d 97.4 0.0013 4.4E-08 53.8 10.2 42 46-88 241-282 (503)
259 3bgw_A DNAB-like replicative h 97.4 0.0014 4.7E-08 52.9 10.2 40 46-87 196-235 (444)
260 4e22_A Cytidylate kinase; P-lo 97.4 0.00013 4.4E-09 54.4 3.8 26 46-71 26-51 (252)
261 1b0u_A Histidine permease; ABC 97.4 9.8E-05 3.4E-09 55.5 3.1 26 46-71 31-56 (262)
262 2og2_A Putative signal recogni 97.4 0.00022 7.4E-09 56.0 5.2 28 46-73 156-183 (359)
263 3a4m_A L-seryl-tRNA(SEC) kinas 97.4 0.00015 5E-09 54.3 4.0 27 47-73 4-30 (260)
264 1e6c_A Shikimate kinase; phosp 97.4 0.00012 4E-09 50.9 3.3 25 48-72 3-27 (173)
265 2p5t_B PEZT; postsegregational 97.4 0.00017 5.8E-09 53.7 4.4 28 45-72 30-57 (253)
266 3lnc_A Guanylate kinase, GMP k 97.4 7.3E-05 2.5E-09 54.8 2.3 26 46-71 26-52 (231)
267 4b3f_X DNA-binding protein smu 97.4 0.00053 1.8E-08 57.9 7.9 62 33-99 193-254 (646)
268 2vli_A Antibiotic resistance p 97.4 7.2E-05 2.5E-09 52.5 2.2 26 47-72 5-30 (183)
269 1zak_A Adenylate kinase; ATP:A 97.4 0.00014 4.7E-09 53.0 3.8 27 46-72 4-30 (222)
270 2ga8_A Hypothetical 39.9 kDa p 97.4 0.00027 9.3E-09 55.3 5.6 42 33-74 6-51 (359)
271 1zd8_A GTP:AMP phosphotransfer 97.3 0.00013 4.4E-09 53.3 3.5 26 46-71 6-31 (227)
272 1uf9_A TT1252 protein; P-loop, 97.3 0.00015 5.3E-09 51.6 3.8 26 45-70 6-31 (203)
273 2if2_A Dephospho-COA kinase; a 97.3 0.00014 4.7E-09 52.1 3.5 22 48-69 2-23 (204)
274 2zu0_C Probable ATP-dependent 97.3 0.00014 4.7E-09 54.8 3.6 25 46-70 45-69 (267)
275 3fb4_A Adenylate kinase; psych 97.3 0.00015 5.2E-09 52.4 3.7 24 49-72 2-25 (216)
276 1g6h_A High-affinity branched- 97.3 0.00011 3.7E-09 55.0 3.0 26 46-71 32-57 (257)
277 2d2e_A SUFC protein; ABC-ATPas 97.3 0.00014 4.7E-09 54.3 3.5 25 46-70 28-52 (250)
278 1ji0_A ABC transporter; ATP bi 97.3 0.00011 3.9E-09 54.4 3.0 26 46-71 31-56 (240)
279 3iqw_A Tail-anchored protein t 97.3 0.0015 5E-08 50.8 9.3 33 42-74 11-43 (334)
280 1p9r_A General secretion pathw 97.3 0.00049 1.7E-08 55.1 6.8 37 36-73 157-193 (418)
281 1sgw_A Putative ABC transporte 97.3 0.0001 3.4E-09 53.8 2.6 27 46-72 34-60 (214)
282 1jjv_A Dephospho-COA kinase; P 97.3 0.00014 4.8E-09 52.2 3.3 22 48-69 3-24 (206)
283 2pez_A Bifunctional 3'-phospho 97.3 0.00019 6.7E-09 50.3 3.9 28 46-73 4-31 (179)
284 1m7g_A Adenylylsulfate kinase; 97.3 0.00027 9.2E-09 51.0 4.8 28 45-72 23-50 (211)
285 1np6_A Molybdopterin-guanine d 97.3 0.00034 1.2E-08 49.3 5.1 28 47-74 6-33 (174)
286 3b85_A Phosphate starvation-in 97.3 0.00011 3.6E-09 53.4 2.5 26 47-73 22-47 (208)
287 3be4_A Adenylate kinase; malar 97.3 0.00018 6.1E-09 52.3 3.7 27 46-72 4-30 (217)
288 3cmu_A Protein RECA, recombina 97.3 0.00084 2.9E-08 62.9 8.8 86 46-138 382-473 (2050)
289 2pt5_A Shikimate kinase, SK; a 97.3 0.00019 6.5E-09 49.6 3.7 24 49-72 2-25 (168)
290 2ff7_A Alpha-hemolysin translo 97.3 0.00013 4.6E-09 54.3 3.0 26 46-71 34-59 (247)
291 1uj2_A Uridine-cytidine kinase 97.3 0.00019 6.4E-09 53.4 3.7 30 44-73 19-48 (252)
292 2ghi_A Transport protein; mult 97.3 0.00014 4.9E-09 54.5 3.1 26 46-71 45-70 (260)
293 3dl0_A Adenylate kinase; phosp 97.3 0.00016 5.6E-09 52.2 3.4 23 49-71 2-24 (216)
294 2xau_A PRE-mRNA-splicing facto 97.3 0.0016 5.6E-08 56.1 10.0 90 48-137 110-219 (773)
295 2qi9_C Vitamin B12 import ATP- 97.3 0.00014 4.8E-09 54.2 3.0 26 46-71 25-50 (249)
296 2v54_A DTMP kinase, thymidylat 97.3 0.00017 5.9E-09 51.5 3.4 25 47-71 4-28 (204)
297 3end_A Light-independent proto 97.3 0.00059 2E-08 52.1 6.5 52 35-88 29-80 (307)
298 2v9p_A Replication protein E1; 97.3 0.00022 7.4E-09 54.8 4.0 27 45-71 124-150 (305)
299 3g5u_A MCG1178, multidrug resi 97.3 0.00029 1E-08 63.9 5.4 26 46-71 1058-1083(1284)
300 2ihy_A ABC transporter, ATP-bi 97.3 0.00015 5.1E-09 55.0 3.0 26 46-71 46-71 (279)
301 3g5u_A MCG1178, multidrug resi 97.3 0.00019 6.5E-09 65.1 4.1 28 45-72 414-441 (1284)
302 3sop_A Neuronal-specific septi 97.2 0.00022 7.7E-09 53.8 3.8 24 49-72 4-27 (270)
303 1gtv_A TMK, thymidylate kinase 97.2 0.00012 4.1E-09 52.7 2.2 25 49-73 2-26 (214)
304 4gzl_A RAS-related C3 botulinu 97.2 0.00022 7.6E-09 51.0 3.6 40 31-70 14-53 (204)
305 3kta_A Chromosome segregation 97.2 0.00023 8E-09 49.9 3.6 25 47-71 26-50 (182)
306 1tf7_A KAIC; homohexamer, hexa 97.2 0.00078 2.7E-08 55.5 7.2 112 46-164 280-417 (525)
307 3fvq_A Fe(3+) IONS import ATP- 97.2 0.00022 7.7E-09 55.9 3.8 27 46-72 29-55 (359)
308 4edh_A DTMP kinase, thymidylat 97.2 0.001 3.6E-08 48.3 7.1 53 46-100 5-57 (213)
309 3cmw_A Protein RECA, recombina 97.2 0.0023 7.8E-08 59.2 10.6 86 46-138 1430-1521(1706)
310 3sr0_A Adenylate kinase; phosp 97.2 0.00029 9.9E-09 51.0 3.7 24 49-72 2-25 (206)
311 3lv8_A DTMP kinase, thymidylat 97.2 0.0012 4.2E-08 48.7 7.2 53 46-99 26-78 (236)
312 1ak2_A Adenylate kinase isoenz 97.2 0.00033 1.1E-08 51.4 4.1 27 46-72 15-41 (233)
313 1zu4_A FTSY; GTPase, signal re 97.2 0.0006 2E-08 52.7 5.7 40 46-87 104-143 (320)
314 2zts_A Putative uncharacterize 97.2 0.0006 2.1E-08 50.0 5.4 41 46-87 29-69 (251)
315 4tmk_A Protein (thymidylate ki 97.2 0.0014 4.9E-08 47.6 7.3 53 47-100 3-55 (213)
316 3v9p_A DTMP kinase, thymidylat 97.1 0.0029 1E-07 46.4 9.0 55 46-100 24-80 (227)
317 1u0j_A DNA replication protein 97.1 0.00071 2.4E-08 50.9 5.7 37 35-71 90-128 (267)
318 2xb4_A Adenylate kinase; ATP-b 97.1 0.00031 1.1E-08 51.2 3.7 23 49-71 2-24 (223)
319 1e4v_A Adenylate kinase; trans 97.1 0.00034 1.2E-08 50.6 3.8 23 49-71 2-24 (214)
320 1tq4_A IIGP1, interferon-induc 97.1 0.00041 1.4E-08 55.4 4.6 25 47-71 69-93 (413)
321 3rlf_A Maltose/maltodextrin im 97.1 0.00029 9.9E-09 55.7 3.6 27 46-72 28-54 (381)
322 2yyz_A Sugar ABC transporter, 97.1 0.0003 1E-08 55.2 3.7 27 46-72 28-54 (359)
323 4akg_A Glutathione S-transfera 97.1 0.00091 3.1E-08 64.3 7.4 72 47-136 1267-1346(2695)
324 2grj_A Dephospho-COA kinase; T 97.1 0.00036 1.2E-08 49.9 3.7 26 46-71 11-36 (192)
325 3r20_A Cytidylate kinase; stru 97.1 0.00036 1.2E-08 51.5 3.8 26 47-72 9-34 (233)
326 3ake_A Cytidylate kinase; CMP 97.1 0.00036 1.2E-08 49.9 3.7 24 49-72 4-27 (208)
327 1nlf_A Regulatory protein REPA 97.1 0.0004 1.4E-08 52.4 4.1 28 46-73 29-56 (279)
328 4eaq_A DTMP kinase, thymidylat 97.1 0.00079 2.7E-08 49.4 5.6 28 46-73 25-52 (229)
329 2ewv_A Twitching motility prot 97.1 0.00039 1.3E-08 54.8 4.2 113 45-168 134-248 (372)
330 2orw_A Thymidine kinase; TMTK, 97.1 0.001 3.5E-08 47.2 5.9 111 47-165 3-114 (184)
331 3nwj_A ATSK2; P loop, shikimat 97.1 0.00034 1.1E-08 52.2 3.5 26 47-72 48-73 (250)
332 1v43_A Sugar-binding transport 97.1 0.00035 1.2E-08 55.1 3.6 27 46-72 36-62 (372)
333 3cr8_A Sulfate adenylyltranfer 97.1 0.00075 2.6E-08 55.9 5.7 45 29-73 349-395 (552)
334 1fx0_B ATP synthase beta chain 97.1 0.0038 1.3E-07 50.8 9.6 91 45-136 163-276 (498)
335 1g29_1 MALK, maltose transport 97.1 0.00035 1.2E-08 55.1 3.5 27 46-72 28-54 (372)
336 3p32_A Probable GTPase RV1496/ 97.1 0.002 7E-08 50.3 7.8 31 44-74 76-106 (355)
337 1a7j_A Phosphoribulokinase; tr 97.0 0.00022 7.4E-09 54.4 2.1 28 46-73 4-31 (290)
338 1oix_A RAS-related protein RAB 97.0 0.0004 1.4E-08 49.2 3.3 24 48-71 30-53 (191)
339 1f2t_A RAD50 ABC-ATPase; DNA d 97.0 0.00047 1.6E-08 47.2 3.5 25 47-71 23-47 (149)
340 1vht_A Dephospho-COA kinase; s 97.0 0.0005 1.7E-08 49.8 3.8 23 47-69 4-26 (218)
341 2ck3_D ATP synthase subunit be 97.0 0.0061 2.1E-07 49.4 10.3 91 45-136 151-263 (482)
342 3zvl_A Bifunctional polynucleo 97.0 0.00039 1.3E-08 55.6 3.4 28 44-71 255-282 (416)
343 3gd7_A Fusion complex of cysti 97.0 0.00046 1.6E-08 54.8 3.8 26 46-71 46-71 (390)
344 2qm8_A GTPase/ATPase; G protei 97.0 0.0011 3.9E-08 51.5 5.9 29 45-73 53-81 (337)
345 2j9r_A Thymidine kinase; TK1, 97.0 0.00011 3.6E-09 53.5 0.0 112 45-165 26-139 (214)
346 1svm_A Large T antigen; AAA+ f 97.0 0.00056 1.9E-08 54.0 4.1 27 45-71 167-193 (377)
347 3crm_A TRNA delta(2)-isopenten 97.0 0.00045 1.5E-08 53.4 3.4 25 48-72 6-30 (323)
348 1oxx_K GLCV, glucose, ABC tran 97.0 0.00027 9.1E-09 55.4 2.2 27 46-72 30-56 (353)
349 3exa_A TRNA delta(2)-isopenten 97.0 0.00048 1.6E-08 53.0 3.5 26 47-72 3-28 (322)
350 2f6r_A COA synthase, bifunctio 97.0 0.00053 1.8E-08 51.9 3.7 23 46-68 74-96 (281)
351 3d3q_A TRNA delta(2)-isopenten 97.0 0.00048 1.6E-08 53.6 3.5 25 48-72 8-32 (340)
352 3a8t_A Adenylate isopentenyltr 97.0 0.00043 1.5E-08 53.8 3.2 26 47-72 40-65 (339)
353 1q3t_A Cytidylate kinase; nucl 97.0 0.00066 2.2E-08 49.9 4.1 27 45-71 14-40 (236)
354 2f9l_A RAB11B, member RAS onco 97.0 0.00047 1.6E-08 49.1 3.2 24 48-71 6-29 (199)
355 3foz_A TRNA delta(2)-isopenten 97.0 0.00056 1.9E-08 52.5 3.8 27 46-72 9-35 (316)
356 1ltq_A Polynucleotide kinase; 96.9 0.00057 1.9E-08 51.9 3.6 23 48-70 3-25 (301)
357 2gza_A Type IV secretion syste 96.9 0.0004 1.4E-08 54.5 2.7 28 46-73 174-201 (361)
358 1nij_A Hypothetical protein YJ 96.9 0.0005 1.7E-08 53.0 3.1 26 46-71 3-28 (318)
359 2yv5_A YJEQ protein; hydrolase 96.9 0.00098 3.3E-08 51.0 4.7 25 47-72 165-189 (302)
360 2r8r_A Sensor protein; KDPD, P 96.9 0.0027 9.1E-08 46.6 6.7 39 48-88 7-45 (228)
361 2vp4_A Deoxynucleoside kinase; 96.9 0.00041 1.4E-08 50.8 2.4 26 45-70 18-43 (230)
362 1lw7_A Transcriptional regulat 96.9 0.00056 1.9E-08 53.7 3.3 27 47-73 170-196 (365)
363 1g8f_A Sulfate adenylyltransfe 96.9 0.0013 4.5E-08 53.9 5.6 47 27-73 373-421 (511)
364 2gk6_A Regulator of nonsense t 96.9 0.0024 8.2E-08 53.7 7.2 63 32-99 183-245 (624)
365 4hlc_A DTMP kinase, thymidylat 96.9 0.0099 3.4E-07 42.8 9.6 49 48-99 3-51 (205)
366 3io3_A DEHA2D07832P; chaperone 96.9 0.0022 7.7E-08 50.1 6.5 43 42-86 13-57 (348)
367 3f9v_A Minichromosome maintena 96.9 0.00037 1.3E-08 58.3 2.2 48 25-72 294-352 (595)
368 2orv_A Thymidine kinase; TP4A 96.9 0.00037 1.3E-08 51.3 1.8 110 46-165 18-127 (234)
369 2ged_A SR-beta, signal recogni 96.9 0.0011 3.8E-08 46.6 4.3 26 45-70 46-71 (193)
370 2www_A Methylmalonic aciduria 96.8 0.002 6.8E-08 50.3 6.0 27 47-73 74-100 (349)
371 2npi_A Protein CLP1; CLP1-PCF1 96.8 0.00067 2.3E-08 55.0 3.3 29 45-73 136-164 (460)
372 3eph_A TRNA isopentenyltransfe 96.8 0.0009 3.1E-08 53.2 4.0 26 47-72 2-27 (409)
373 1yrb_A ATP(GTP)binding protein 96.8 0.0023 8E-08 47.3 6.1 38 46-86 13-50 (262)
374 2wji_A Ferrous iron transport 96.8 0.00092 3.1E-08 46.0 3.5 23 48-70 4-26 (165)
375 2obl_A ESCN; ATPase, hydrolase 96.8 0.00096 3.3E-08 52.1 3.9 29 45-73 69-97 (347)
376 2ocp_A DGK, deoxyguanosine kin 96.8 0.00096 3.3E-08 49.1 3.6 26 47-72 2-27 (241)
377 2qmh_A HPR kinase/phosphorylas 96.8 0.00085 2.9E-08 48.3 3.1 27 46-72 33-59 (205)
378 1jr3_D DNA polymerase III, del 96.8 0.0079 2.7E-07 46.5 8.8 98 45-163 16-116 (343)
379 2pt7_A CAG-ALFA; ATPase, prote 96.7 0.00052 1.8E-08 53.3 2.0 109 47-168 171-279 (330)
380 2zej_A Dardarin, leucine-rich 96.7 0.00085 2.9E-08 47.0 2.9 22 49-70 4-25 (184)
381 2wjg_A FEOB, ferrous iron tran 96.7 0.0011 3.8E-08 46.3 3.4 23 48-70 8-30 (188)
382 2v3c_C SRP54, signal recogniti 96.7 0.001 3.5E-08 53.5 3.6 37 47-85 99-135 (432)
383 2dyk_A GTP-binding protein; GT 96.7 0.0012 4.2E-08 44.7 3.5 23 48-70 2-24 (161)
384 2afh_E Nitrogenase iron protei 96.7 0.0032 1.1E-07 47.5 6.1 40 47-88 2-41 (289)
385 1cp2_A CP2, nitrogenase iron p 96.7 0.003 1E-07 47.0 5.8 39 48-88 2-40 (269)
386 3l0o_A Transcription terminati 96.7 0.0007 2.4E-08 53.6 2.3 30 45-74 173-202 (427)
387 2oap_1 GSPE-2, type II secreti 96.7 0.0013 4.5E-08 54.0 4.0 27 47-73 260-286 (511)
388 1u0l_A Probable GTPase ENGC; p 96.7 0.0018 6.2E-08 49.5 4.6 26 47-72 169-194 (301)
389 3qks_A DNA double-strand break 96.7 0.0016 5.3E-08 46.9 3.9 26 47-72 23-48 (203)
390 2ce2_X GTPase HRAS; signaling 96.6 0.0013 4.5E-08 44.6 3.3 22 49-70 5-26 (166)
391 1z2a_A RAS-related protein RAB 96.6 0.0013 4.4E-08 44.9 3.2 24 48-71 6-29 (168)
392 2p67_A LAO/AO transport system 96.6 0.0087 3E-07 46.5 8.3 30 44-73 53-82 (341)
393 2gj8_A MNME, tRNA modification 96.6 0.0013 4.3E-08 45.8 3.2 23 48-70 5-27 (172)
394 1pui_A ENGB, probable GTP-bind 96.6 0.00076 2.6E-08 48.2 2.0 27 45-71 24-50 (210)
395 3e1s_A Exodeoxyribonuclease V, 96.6 0.0056 1.9E-07 51.0 7.4 41 47-90 204-244 (574)
396 3qf7_A RAD50; ABC-ATPase, ATPa 96.6 0.0016 5.4E-08 51.2 3.9 25 47-71 23-47 (365)
397 2qnr_A Septin-2, protein NEDD5 96.6 0.0011 3.7E-08 50.8 2.9 22 49-70 20-41 (301)
398 2h92_A Cytidylate kinase; ross 96.6 0.0013 4.4E-08 47.5 3.2 24 48-71 4-27 (219)
399 3euj_A Chromosome partition pr 96.6 0.0014 4.8E-08 53.4 3.6 26 48-73 30-55 (483)
400 2dpy_A FLII, flagellum-specifi 96.6 0.0013 4.6E-08 52.9 3.5 29 45-73 155-183 (438)
401 2lkc_A Translation initiation 96.6 0.0017 5.9E-08 44.8 3.6 25 46-70 7-31 (178)
402 1nrj_B SR-beta, signal recogni 96.6 0.0018 6.1E-08 46.5 3.8 27 45-71 10-36 (218)
403 2wjy_A Regulator of nonsense t 96.6 0.0053 1.8E-07 53.1 7.3 62 33-99 360-421 (800)
404 2qag_B Septin-6, protein NEDD5 96.6 0.0012 4.1E-08 52.9 3.1 21 50-70 45-65 (427)
405 1ypw_A Transitional endoplasmi 96.6 0.00083 2.9E-08 58.1 2.3 48 26-73 477-537 (806)
406 1zj6_A ADP-ribosylation factor 96.6 0.0034 1.2E-07 43.9 5.1 27 44-70 13-39 (187)
407 3qkt_A DNA double-strand break 96.6 0.0015 5.2E-08 50.7 3.5 24 46-69 22-45 (339)
408 3gmt_A Adenylate kinase; ssgci 96.6 0.0016 5.6E-08 47.8 3.5 24 49-72 10-33 (230)
409 1kao_A RAP2A; GTP-binding prot 96.6 0.0016 5.3E-08 44.3 3.2 24 48-71 4-27 (167)
410 1svi_A GTP-binding protein YSX 96.5 0.002 6.7E-08 45.3 3.8 26 45-70 21-46 (195)
411 3kjh_A CO dehydrogenase/acetyl 96.5 0.0033 1.1E-07 46.0 5.1 39 50-90 3-41 (254)
412 2axn_A 6-phosphofructo-2-kinas 96.5 0.0019 6.5E-08 53.2 4.1 28 46-73 34-61 (520)
413 1z08_A RAS-related protein RAB 96.5 0.0016 5.6E-08 44.5 3.2 23 48-70 7-29 (170)
414 2c61_A A-type ATP synthase non 96.5 0.0069 2.4E-07 49.0 7.2 91 46-136 151-259 (469)
415 2xzl_A ATP-dependent helicase 96.5 0.0065 2.2E-07 52.6 7.4 64 32-100 363-426 (802)
416 1ek0_A Protein (GTP-binding pr 96.5 0.0017 5.8E-08 44.3 3.2 23 49-71 5-27 (170)
417 1g16_A RAS-related protein SEC 96.5 0.0018 6.2E-08 44.2 3.3 23 48-70 4-26 (170)
418 1u8z_A RAS-related protein RAL 96.5 0.0022 7.7E-08 43.5 3.8 24 48-71 5-28 (168)
419 1z0j_A RAB-22, RAS-related pro 96.5 0.0017 6E-08 44.3 3.2 24 48-71 7-30 (170)
420 2erx_A GTP-binding protein DI- 96.5 0.0016 5.6E-08 44.5 3.0 23 48-70 4-26 (172)
421 2rcn_A Probable GTPase ENGC; Y 96.5 0.0017 6E-08 50.8 3.5 26 47-72 215-240 (358)
422 1c1y_A RAS-related protein RAP 96.5 0.0018 6.1E-08 44.1 3.2 23 48-70 4-26 (167)
423 2nzj_A GTP-binding protein REM 96.5 0.002 7E-08 44.2 3.6 25 47-71 4-28 (175)
424 1r8s_A ADP-ribosylation factor 96.5 0.0019 6.5E-08 43.9 3.4 22 50-71 3-24 (164)
425 3zq6_A Putative arsenical pump 96.5 0.0057 1.9E-07 47.2 6.4 38 48-87 15-52 (324)
426 1m8p_A Sulfate adenylyltransfe 96.5 0.0039 1.3E-07 51.9 5.8 29 45-73 394-422 (573)
427 1wms_A RAB-9, RAB9, RAS-relate 96.5 0.0018 6.1E-08 44.7 3.2 23 48-70 8-30 (177)
428 1p5z_B DCK, deoxycytidine kina 96.5 0.0008 2.7E-08 50.2 1.5 28 45-72 22-49 (263)
429 1moz_A ARL1, ADP-ribosylation 96.5 0.0024 8.4E-08 44.3 3.9 25 45-69 16-40 (183)
430 1ky3_A GTP-binding protein YPT 96.5 0.0018 6.2E-08 44.7 3.2 26 46-71 7-32 (182)
431 3q72_A GTP-binding protein RAD 96.5 0.0017 5.9E-08 44.2 3.0 21 49-69 4-24 (166)
432 1m7b_A RND3/RHOE small GTP-bin 96.5 0.002 6.8E-08 45.0 3.3 23 48-70 8-30 (184)
433 2fn4_A P23, RAS-related protei 96.5 0.0026 9E-08 43.9 3.9 25 46-70 8-32 (181)
434 2hxs_A RAB-26, RAS-related pro 96.4 0.002 6.8E-08 44.5 3.3 24 48-71 7-30 (178)
435 3q85_A GTP-binding protein REM 96.4 0.0019 6.4E-08 44.2 3.1 21 49-69 4-24 (169)
436 1r2q_A RAS-related protein RAB 96.4 0.002 6.8E-08 43.9 3.2 23 48-70 7-29 (170)
437 4dzz_A Plasmid partitioning pr 96.4 0.0054 1.8E-07 43.5 5.6 43 48-92 2-45 (206)
438 3con_A GTPase NRAS; structural 96.4 0.002 6.8E-08 45.1 3.2 24 48-71 22-45 (190)
439 2gks_A Bifunctional SAT/APS ki 96.4 0.0057 1.9E-07 50.6 6.4 46 29-74 352-399 (546)
440 2woj_A ATPase GET3; tail-ancho 96.4 0.0086 2.9E-07 46.8 7.1 39 45-85 16-56 (354)
441 3pqc_A Probable GTP-binding pr 96.4 0.0025 8.6E-08 44.6 3.7 25 47-71 23-47 (195)
442 1m2o_B GTP-binding protein SAR 96.4 0.0022 7.6E-08 45.2 3.3 25 46-70 22-46 (190)
443 2cxx_A Probable GTP-binding pr 96.4 0.0019 6.5E-08 45.1 3.0 22 49-70 3-24 (190)
444 2y8e_A RAB-protein 6, GH09086P 96.4 0.0023 7.8E-08 44.1 3.3 23 48-70 15-37 (179)
445 3ihw_A Centg3; RAS, centaurin, 96.4 0.0021 7.3E-08 45.1 3.2 23 48-70 21-43 (184)
446 1z0f_A RAB14, member RAS oncog 96.4 0.0022 7.6E-08 44.1 3.2 25 47-71 15-39 (179)
447 1f6b_A SAR1; gtpases, N-termin 96.4 0.0035 1.2E-07 44.5 4.3 25 45-69 23-47 (198)
448 3tqf_A HPR(Ser) kinase; transf 96.4 0.0023 8E-08 44.9 3.2 24 47-70 16-39 (181)
449 3bc1_A RAS-related protein RAB 96.4 0.0023 7.7E-08 44.7 3.2 23 48-70 12-34 (195)
450 3vr4_D V-type sodium ATPase su 96.4 0.01 3.6E-07 47.8 7.4 91 46-136 150-258 (465)
451 1ega_A Protein (GTP-binding pr 96.4 0.0018 6.2E-08 49.5 2.9 25 46-70 7-31 (301)
452 2bme_A RAB4A, RAS-related prot 96.4 0.0024 8.3E-08 44.4 3.3 24 48-71 11-34 (186)
453 1c9k_A COBU, adenosylcobinamid 96.4 0.0022 7.4E-08 45.4 3.0 21 50-70 2-22 (180)
454 2oil_A CATX-8, RAS-related pro 96.4 0.0023 7.9E-08 44.9 3.2 24 48-71 26-49 (193)
455 3gqb_B V-type ATP synthase bet 96.3 0.011 3.7E-07 47.7 7.3 91 46-136 146-261 (464)
456 2o5v_A DNA replication and rep 96.3 0.0024 8.3E-08 50.1 3.5 23 47-69 26-48 (359)
457 2r9v_A ATP synthase subunit al 96.3 0.013 4.6E-07 47.8 7.9 89 45-136 173-277 (515)
458 1upt_A ARL1, ADP-ribosylation 96.3 0.0032 1.1E-07 43.1 3.8 23 48-70 8-30 (171)
459 2cjw_A GTP-binding protein GEM 96.3 0.0026 8.9E-08 45.0 3.4 22 48-69 7-28 (192)
460 2woo_A ATPase GET3; tail-ancho 96.3 0.0087 3E-07 46.2 6.6 40 44-85 16-55 (329)
461 4dsu_A GTPase KRAS, isoform 2B 96.3 0.0025 8.5E-08 44.4 3.2 24 48-71 5-28 (189)
462 3c5c_A RAS-like protein 12; GD 96.3 0.0025 8.6E-08 44.7 3.2 24 48-71 22-45 (187)
463 3dz8_A RAS-related protein RAB 96.3 0.0029 9.8E-08 44.5 3.5 24 48-71 24-47 (191)
464 2a9k_A RAS-related protein RAL 96.3 0.0026 9E-08 44.1 3.2 24 47-70 18-41 (187)
465 3kkq_A RAS-related protein M-R 96.3 0.0026 9E-08 44.1 3.2 24 47-70 18-41 (183)
466 2efe_B Small GTP-binding prote 96.3 0.0026 9E-08 44.0 3.2 23 48-70 13-35 (181)
467 1fzq_A ADP-ribosylation factor 96.3 0.0041 1.4E-07 43.4 4.2 26 45-70 14-39 (181)
468 3fkq_A NTRC-like two-domain pr 96.3 0.0082 2.8E-07 47.2 6.3 57 28-86 112-181 (373)
469 1mh1_A RAC1; GTP-binding, GTPa 96.3 0.0027 9.2E-08 44.1 3.2 23 48-70 6-28 (186)
470 1e69_A Chromosome segregation 96.3 0.0018 6.3E-08 49.8 2.5 23 47-69 24-46 (322)
471 3clv_A RAB5 protein, putative; 96.3 0.0026 9E-08 44.6 3.2 24 47-70 7-30 (208)
472 2g6b_A RAS-related protein RAB 96.3 0.0027 9.4E-08 43.8 3.2 24 48-71 11-34 (180)
473 1bif_A 6-phosphofructo-2-kinas 96.3 0.0032 1.1E-07 51.1 4.0 28 46-73 38-65 (469)
474 2fg5_A RAB-22B, RAS-related pr 96.3 0.0028 9.7E-08 44.6 3.3 24 48-71 24-47 (192)
475 3tmk_A Thymidylate kinase; pho 96.3 0.0038 1.3E-07 45.4 4.0 27 47-73 5-31 (216)
476 2iwr_A Centaurin gamma 1; ANK 96.3 0.002 6.8E-08 44.6 2.4 23 48-70 8-30 (178)
477 3t5g_A GTP-binding protein RHE 96.3 0.003 1E-07 43.8 3.3 24 47-70 6-29 (181)
478 3tw8_B RAS-related protein RAB 96.3 0.0025 8.6E-08 43.9 2.9 24 47-70 9-32 (181)
479 3bwd_D RAC-like GTP-binding pr 96.3 0.0029 9.9E-08 43.8 3.2 24 47-70 8-31 (182)
480 2ew1_A RAS-related protein RAB 96.3 0.0029 1E-07 45.1 3.3 25 47-71 26-50 (201)
481 3t1o_A Gliding protein MGLA; G 96.3 0.0028 9.5E-08 44.4 3.1 24 48-71 15-38 (198)
482 2bov_A RAla, RAS-related prote 96.3 0.0029 9.8E-08 44.8 3.2 25 46-70 13-37 (206)
483 3k53_A Ferrous iron transport 96.2 0.0031 1.1E-07 47.2 3.5 25 47-71 3-27 (271)
484 3lxx_A GTPase IMAP family memb 96.2 0.0031 1.1E-07 46.2 3.4 27 45-71 27-53 (239)
485 2gf9_A RAS-related protein RAB 96.2 0.003 1E-07 44.3 3.2 24 48-71 23-46 (189)
486 2atv_A RERG, RAS-like estrogen 96.2 0.0029 1E-07 44.6 3.2 25 46-70 27-51 (196)
487 1vg8_A RAS-related protein RAB 96.2 0.003 1E-07 44.8 3.2 25 47-71 8-32 (207)
488 2qag_C Septin-7; cell cycle, c 96.2 0.0021 7E-08 51.5 2.5 22 50-71 34-55 (418)
489 3oes_A GTPase rhebl1; small GT 96.2 0.0032 1.1E-07 44.7 3.3 26 46-71 23-48 (201)
490 1gwn_A RHO-related GTP-binding 96.2 0.0032 1.1E-07 45.1 3.3 24 47-70 28-51 (205)
491 1w1w_A Structural maintenance 96.2 0.0031 1.1E-07 50.5 3.5 24 47-70 26-49 (430)
492 2gf0_A GTP-binding protein DI- 96.2 0.0033 1.1E-07 44.2 3.3 24 47-70 8-31 (199)
493 1zd9_A ADP-ribosylation factor 96.2 0.0032 1.1E-07 44.2 3.2 24 48-71 23-46 (188)
494 3cbq_A GTP-binding protein REM 96.2 0.0022 7.6E-08 45.5 2.4 22 47-68 23-44 (195)
495 3ug7_A Arsenical pump-driving 96.2 0.01 3.5E-07 46.2 6.4 40 45-86 24-63 (349)
496 1zbd_A Rabphilin-3A; G protein 96.2 0.003 1E-07 44.8 3.1 24 48-71 9-32 (203)
497 1z06_A RAS-related protein RAB 96.2 0.0032 1.1E-07 44.1 3.2 24 47-70 20-43 (189)
498 2a5j_A RAS-related protein RAB 96.2 0.0032 1.1E-07 44.2 3.2 23 48-70 22-44 (191)
499 1x6v_B Bifunctional 3'-phospho 96.2 0.004 1.4E-07 52.3 4.2 28 46-73 51-78 (630)
500 2aka_B Dynamin-1; fusion prote 96.2 0.0074 2.5E-07 45.5 5.4 25 46-70 25-49 (299)
No 1
>2a5y_B CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis elegans} SCOP: a.4.5.80 a.77.1.3 c.37.1.20 PDB: 3lqq_A* 3lqr_A*
Probab=99.84 E-value=1.6e-20 Score=155.89 Aligned_cols=136 Identities=15% Similarity=0.159 Sum_probs=102.9
Q ss_pred cchHHHHHHHHHHhccC---CccEEEEEeCCCCcHHHHHHHHHh--HHhhhhcccceEEEEecCCc--CHHHHHHHHHHH
Q 035585 29 KSRLSTLKSIQDALTDV---NVNIVGVYGMGGIGKTTLVKEFAR--QASEEKLFDQVVFSEVSQTP--DIKKIHGEIAEK 101 (183)
Q Consensus 29 ~gR~~~l~~l~~~l~~~---~~~~v~i~G~~G~GKTtL~~~~~~--~~~~~~~~~~~~~~~~~~~~--~~~~~~~~i~~~ 101 (183)
+||+.+++.|.++|... ..++++|+|++|+||||||+.+++ .......|+.++|++++... +...+...++..
T Consensus 131 ~GR~~~~~~l~~~L~~~~~~~~~vv~I~G~gGvGKTtLA~~v~~~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~~~il~~ 210 (549)
T 2a5y_B 131 YIREYHVDRVIKKLDEMCDLDSFFLFLHGRAGSGKSVIASQALSKSDQLIGINYDSIVWLKDSGTAPKSTFDLFTDILLM 210 (549)
T ss_dssp CCCHHHHHHHHHHHHHHTTSSSEEEEEECSTTSSHHHHHHHHHHHCSSTBTTTBSEEEEEECCCCSTTHHHHHHHHHHHH
T ss_pred CCchHHHHHHHHHHhcccCCCceEEEEEcCCCCCHHHHHHHHHHhhhHHHhccCCcEEEEEECCCCCCCHHHHHHHHHHH
Confidence 49999999999998733 578999999999999999999997 23333468999999988875 678888999998
Q ss_pred hCCCch--------hHHHHHHHHHHHHHHhcCC-eEEEEEeCCCCcccccccCcCCCCCCCCcEEEEEecChHHHhhcC
Q 035585 102 LGLEFS--------EEAESRRASRLYERLKKEK-MILVILDNIWKYLDLETVGIPFGDDHRGCKLLLTARDCNVLLNMS 171 (183)
Q Consensus 102 l~~~~~--------~~~~~~~~~~~~~~~~~~~-~~llvlD~~~~~~~~~~l~~~~~~~~~~~~iiitsr~~~~~~~~~ 171 (183)
++.... ..........+.+.+. ++ ++||||||+|+..++ .+. ..+||+||||||+..+...++
T Consensus 211 l~~~~~~~~~~~~~~~~~~~l~~~l~~~L~-~~kr~LlVLDdv~~~~~~-~~~-----~~~gs~ilvTTR~~~v~~~~~ 282 (549)
T 2a5y_B 211 LKSEDDLLNFPSVEHVTSVVLKRMICNALI-DRPNTLFVFDDVVQEETI-RWA-----QELRLRCLVTTRDVEISNAAS 282 (549)
T ss_dssp HTTTSCCTTCCCCTTCCHHHHHHHHHHHHT-TSTTEEEEEEEECCHHHH-HHH-----HHTTCEEEEEESBGGGGGGCC
T ss_pred HhcCcccccccccccccHHHHHHHHHHHHc-CCCcEEEEEECCCCchhh-ccc-----ccCCCEEEEEcCCHHHHHHcC
Confidence 875421 1112223455556665 64 999999999987654 221 127999999999999887654
No 2
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=99.77 E-value=1.9e-18 Score=154.03 Aligned_cols=141 Identities=25% Similarity=0.315 Sum_probs=102.4
Q ss_pred cCCCcccccchHHHHHHHHHHhc--cCCccEEEEEeCCCCcHHHHHHHHHhHHhh--hhcccceEEEEecCCc--CHHHH
Q 035585 21 SNKGYEAFKSRLSTLKSIQDALT--DVNVNIVGVYGMGGIGKTTLVKEFARQASE--EKLFDQVVFSEVSQTP--DIKKI 94 (183)
Q Consensus 21 ~~~~~~~~~gR~~~l~~l~~~l~--~~~~~~v~i~G~~G~GKTtL~~~~~~~~~~--~~~~~~~~~~~~~~~~--~~~~~ 94 (183)
+|+++..|+||+++++.|.+.|. +...++++|+|++|+||||||++++++... ..++..++|++++... .....
T Consensus 119 ~p~~~~~~vgR~~~~~~l~~~l~~~~~~~~~v~i~G~gG~GKTtLa~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~ 198 (1249)
T 3sfz_A 119 VPQRPVIFVTRKKLVHAIQQKLWKLNGEPGWVTIYGMAGCGKSVLAAEAVRDHSLLEGCFSGGVHWVSIGKQDKSGLLMK 198 (1249)
T ss_dssp CCCCCSSCCCCHHHHHHHHHHHHTTTTSCEEEEEECSTTSSHHHHHHHHTCCHHHHTTTSTTCEEEEECCSCCHHHHHHH
T ss_pred CCCCCceeccHHHHHHHHHHHHhhccCCCCEEEEEeCCCCCHHHHHHHHhcChhHHHhhCCCeEEEEEECCcCchHHHHH
Confidence 56677889999999999999985 456789999999999999999999987643 2245678899998753 33444
Q ss_pred HHHHHHHhCCCch-----hHHHHHHHHHHHHHHhc-CCeEEEEEeCCCCcccccccCcCCCCCCCCcEEEEEecChHHHh
Q 035585 95 HGEIAEKLGLEFS-----EEAESRRASRLYERLKK-EKMILVILDNIWKYLDLETVGIPFGDDHRGCKLLLTARDCNVLL 168 (183)
Q Consensus 95 ~~~i~~~l~~~~~-----~~~~~~~~~~~~~~~~~-~~~~llvlD~~~~~~~~~~l~~~~~~~~~~~~iiitsr~~~~~~ 168 (183)
+..++..+..... ..........+...+.. ++++||||||+|+..++..+ .+||+||+|||+..+..
T Consensus 199 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~LlvlDd~~~~~~~~~~-------~~~~~ilvTtR~~~~~~ 271 (1249)
T 3sfz_A 199 LQNLCMRLDQEESFSQRLPLNIEEAKDRLRVLMLRKHPRSLLILDDVWDPWVLKAF-------DNQCQILLTTRDKSVTD 271 (1249)
T ss_dssp HHHHHHHHTTTCTTCSSCCSSHHHHHHHHHHHTSSSSCSCEEEEESCCCHHHHTTT-------CSSCEEEEEESSTTTTT
T ss_pred HHHHHHHhhhhcccccCCCCCHHHHHHHHHHHHhccCCCEEEEEecCCCHHHHHhh-------cCCCEEEEEcCCHHHHH
Confidence 5666666644321 11223333444444431 34999999999987666543 56899999999998874
No 3
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A*
Probab=99.77 E-value=1e-18 Score=151.57 Aligned_cols=135 Identities=19% Similarity=0.139 Sum_probs=98.7
Q ss_pred cccchHHHHHHHHHHhcc-CCccEEEEEeCCCCcHHHHHHHHHhHHhhhhcccc-eEEEEecCCcCHHHHHHHHHHHhCC
Q 035585 27 AFKSRLSTLKSIQDALTD-VNVNIVGVYGMGGIGKTTLVKEFARQASEEKLFDQ-VVFSEVSQTPDIKKIHGEIAEKLGL 104 (183)
Q Consensus 27 ~~~gR~~~l~~l~~~l~~-~~~~~v~i~G~~G~GKTtL~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~i~~~l~~ 104 (183)
..+||+++++.|.++|.. ...++++|+|++|+||||||+.+++.......|.. ++|++++...+...+...++..+..
T Consensus 129 ~~VGRe~eLeeL~elL~~~d~~RVV~IvGmGGIGKTTLAk~Vy~d~rV~~~Fd~gV~WVsVs~~~d~~~IL~~Ll~lL~~ 208 (1221)
T 1vt4_I 129 YNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQ 208 (1221)
T ss_dssp SCCCCHHHHHHHHHHHHHCCSSCEEEECCSTTSSHHHHHHHHHHHCHHHHHHSSCEEEEECCCSSSHHHHHHHHHHHHHH
T ss_pred CCCCcHHHHHHHHHHHhccCCCeEEEEEcCCCccHHHHHHHHHHhhHHHHhCCCcEEEEEeCCCCCHHHHHHHHHHHHhh
Confidence 359999999999999874 45789999999999999999999976544344665 9999999887777777776654311
Q ss_pred ---C---------chhHHHHHHHHHHHHHH--hcCCeEEEEEeCCCCcccccccCcCCCCCCCCcEEEEEecChHHHh
Q 035585 105 ---E---------FSEEAESRRASRLYERL--KKEKMILVILDNIWKYLDLETVGIPFGDDHRGCKLLLTARDCNVLL 168 (183)
Q Consensus 105 ---~---------~~~~~~~~~~~~~~~~~--~~~~~~llvlD~~~~~~~~~~l~~~~~~~~~~~~iiitsr~~~~~~ 168 (183)
. ............+...+ ..++++||||||+|+...|..+ .+||+||||||+..++.
T Consensus 209 i~~~~~~~~d~~~~ip~~leeL~e~Lr~lL~~l~~KRvLLVLDDVwd~eqLe~f-------~pGSRILVTTRd~~Va~ 279 (1221)
T 1vt4_I 209 IDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAF-------NLSCKILLTTRFKQVTD 279 (1221)
T ss_dssp HCSSSTTTSCCCSSHHHHHHHHHHHHHHHHHHSTTSSCEEEEESCCCHHHHHHH-------HSSCCEEEECSCSHHHH
T ss_pred cCcccccccccccCCCCCHHHHHHHHHHHHHhhcCCCEEEEEeCcChHHHHHhh-------CCCeEEEEeccChHHHH
Confidence 0 01111222233344433 1379999999999997777654 16899999999999875
No 4
>1z6t_A APAF-1, apoptotic protease activating factor 1; caspase activation, ADP, nucleotide binding, CARD, apoptosis; HET: ADP; 2.21A {Homo sapiens}
Probab=99.76 E-value=5.5e-18 Score=141.52 Aligned_cols=142 Identities=25% Similarity=0.326 Sum_probs=98.9
Q ss_pred cCCCcccccchHHHHHHHHHHhc--cCCccEEEEEeCCCCcHHHHHHHHHhHHhh-hhcc-cceEEEEecCCcC--HHHH
Q 035585 21 SNKGYEAFKSRLSTLKSIQDALT--DVNVNIVGVYGMGGIGKTTLVKEFARQASE-EKLF-DQVVFSEVSQTPD--IKKI 94 (183)
Q Consensus 21 ~~~~~~~~~gR~~~l~~l~~~l~--~~~~~~v~i~G~~G~GKTtL~~~~~~~~~~-~~~~-~~~~~~~~~~~~~--~~~~ 94 (183)
.|+.+..|+||+++++.|.+.+. ....++++|+|++|+||||||..+++.... ...| ..++|++++.... ....
T Consensus 119 ~P~~~~~~vGR~~~l~~L~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~v~wv~~~~~~~~~~~~~ 198 (591)
T 1z6t_A 119 VPQRPVVFVTRKKLVNAIQQKLSKLKGEPGWVTIHGMAGCGKSVLAAEAVRDHSLLEGCFPGGVHWVSVGKQDKSGLLMK 198 (591)
T ss_dssp CCCCCSSCCCCHHHHHHHHHHHTTSTTSCEEEEEECCTTSSHHHHHHHHHCCHHHHHHHCTTCEEEEEEESCCHHHHHHH
T ss_pred CCCCCCeecccHHHHHHHHHHHhcccCCCceEEEEcCCCCCHHHHHHHHHhchhHHHhhCCCceEEEECCCCchHHHHHH
Confidence 46677889999999999999987 345789999999999999999999987643 3346 4799999876522 1222
Q ss_pred HHHHHHHhCCC-----chhHHHHHHHHHHHHHHhc-CCeEEEEEeCCCCcccccccCcCCCCCCCCcEEEEEecChHHHh
Q 035585 95 HGEIAEKLGLE-----FSEEAESRRASRLYERLKK-EKMILVILDNIWKYLDLETVGIPFGDDHRGCKLLLTARDCNVLL 168 (183)
Q Consensus 95 ~~~i~~~l~~~-----~~~~~~~~~~~~~~~~~~~-~~~~llvlD~~~~~~~~~~l~~~~~~~~~~~~iiitsr~~~~~~ 168 (183)
+..++..+... ............+...+.. .++++|||||+|+...+..+ .++++||+|||+..+..
T Consensus 199 l~~l~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~LLVLDdv~~~~~l~~l-------~~~~~ilvTsR~~~~~~ 271 (591)
T 1z6t_A 199 LQNLCTRLDQDESFSQRLPLNIEEAKDRLRILMLRKHPRSLLILDDVWDSWVLKAF-------DSQCQILLTTRDKSVTD 271 (591)
T ss_dssp HHHHHHHHCSSCCSCSSCCCSHHHHHHHHHHHHHHTCTTCEEEEEEECCHHHHHTT-------CSSCEEEEEESCGGGGT
T ss_pred HHHHHHHhccccccccCCCCCHHHHHHHHHHHHccCCCCeEEEEeCCCCHHHHHHh-------cCCCeEEEECCCcHHHH
Confidence 23334444421 1112223334445555543 37899999999976554432 46899999999998766
Q ss_pred h
Q 035585 169 N 169 (183)
Q Consensus 169 ~ 169 (183)
.
T Consensus 272 ~ 272 (591)
T 1z6t_A 272 S 272 (591)
T ss_dssp T
T ss_pred h
Confidence 4
No 5
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}
Probab=99.51 E-value=2.6e-14 Score=111.48 Aligned_cols=142 Identities=13% Similarity=0.138 Sum_probs=89.8
Q ss_pred hhhcCCCcccccchHHHHHHHHHHhccCCccEEEEEeCCCCcHHHHHHHHHhHHhhhhcccceEEEEecCCc------CH
Q 035585 18 WLKSNKGYEAFKSRLSTLKSIQDALTDVNVNIVGVYGMGGIGKTTLVKEFARQASEEKLFDQVVFSEVSQTP------DI 91 (183)
Q Consensus 18 ~~~~~~~~~~~~gR~~~l~~l~~~l~~~~~~~v~i~G~~G~GKTtL~~~~~~~~~~~~~~~~~~~~~~~~~~------~~ 91 (183)
.+.|+..+..|+||+++++.|.+++.+. +.++|+|++|+|||+|++.+.+.. .++|+++.... +.
T Consensus 4 ~~~~~~~~~~~~gR~~el~~L~~~l~~~--~~v~i~G~~G~GKT~Ll~~~~~~~-------~~~~~~~~~~~~~~~~~~~ 74 (350)
T 2qen_A 4 DLRPKTRREDIFDREEESRKLEESLENY--PLTLLLGIRRVGKSSLLRAFLNER-------PGILIDCRELYAERGHITR 74 (350)
T ss_dssp CCSCCCSGGGSCSCHHHHHHHHHHHHHC--SEEEEECCTTSSHHHHHHHHHHHS-------SEEEEEHHHHHHTTTCBCH
T ss_pred CCCCCCChHhcCChHHHHHHHHHHHhcC--CeEEEECCCcCCHHHHHHHHHHHc-------CcEEEEeecccccccCCCH
Confidence 4456677788999999999999988653 799999999999999999998764 16777765432 45
Q ss_pred HHHHHHHHHHhCCC-----------------ch--hHHHHHHHHHHHHHHhcCCeEEEEEeCCCCcccc--------ccc
Q 035585 92 KKIHGEIAEKLGLE-----------------FS--EEAESRRASRLYERLKKEKMILVILDNIWKYLDL--------ETV 144 (183)
Q Consensus 92 ~~~~~~i~~~l~~~-----------------~~--~~~~~~~~~~~~~~~~~~~~~llvlD~~~~~~~~--------~~l 144 (183)
..++..+.+.+... .+ ..........+.......++.+|||||++....+ ..+
T Consensus 75 ~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~vlvlDe~~~~~~~~~~~~~~~~~~ 154 (350)
T 2qen_A 75 EELIKELQSTISPFQKFQSKFKISLNLKFLTLEPRKLSLREVFRELNDLGEELGEFIVAFDEAQYLRFYGSRGGKELLAL 154 (350)
T ss_dssp HHHHHHHHHHSCSHHHHHHHHTCCCCCGGGTSCGGGCCHHHHHHHHHHHHHHHSCEEEEEETGGGGGGBTTTTTHHHHHH
T ss_pred HHHHHHHHHHHHHHHhHhhhceeEEEecceeeccccchHHHHHHHHHHHHhccCCEEEEEeCHHHHhccCccchhhHHHH
Confidence 55666666554320 00 0111122222323232224899999999876431 111
Q ss_pred CcCCCCCCCCcEEEEEecChHHHh
Q 035585 145 GIPFGDDHRGCKLLLTARDCNVLL 168 (183)
Q Consensus 145 ~~~~~~~~~~~~iiitsr~~~~~~ 168 (183)
+..+.+..++..+++|++...++.
T Consensus 155 L~~~~~~~~~~~~il~g~~~~~l~ 178 (350)
T 2qen_A 155 FAYAYDSLPNLKIILTGSEVGLLH 178 (350)
T ss_dssp HHHHHHHCTTEEEEEEESSHHHHH
T ss_pred HHHHHHhcCCeEEEEECCcHHHHH
Confidence 111111224778999988766433
No 6
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*
Probab=99.50 E-value=9.2e-14 Score=110.83 Aligned_cols=144 Identities=22% Similarity=0.234 Sum_probs=95.3
Q ss_pred CcccccchHHHHHHHHHHh-c----c--CCccEEEE--EeCCCCcHHHHHHHHHhHHhhhh----cccceEEEEecCCcC
Q 035585 24 GYEAFKSRLSTLKSIQDAL-T----D--VNVNIVGV--YGMGGIGKTTLVKEFARQASEEK----LFDQVVFSEVSQTPD 90 (183)
Q Consensus 24 ~~~~~~gR~~~l~~l~~~l-~----~--~~~~~v~i--~G~~G~GKTtL~~~~~~~~~~~~----~~~~~~~~~~~~~~~ 90 (183)
.+..|+||+++++.|.+.+ . . ...+.+.| +|++|+|||+|++.+++...... ....++|+++.....
T Consensus 20 ~p~~l~gR~~el~~l~~~l~~~~~~~~~~~~~~~li~i~G~~G~GKT~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 99 (412)
T 1w5s_A 20 IPPELRVRRGEAEALARIYLNRLLSGAGLSDVNMIYGSIGRVGIGKTTLAKFTVKRVSEAAAKEGLTVKQAYVNAFNAPN 99 (412)
T ss_dssp CCSSCSSSCHHHHHHHHHHHHHHHTSSCBCCEEEEEECTTCCSSSHHHHHHHHHHHHHHHHHHTTCCEEEEEEEGGGCCS
T ss_pred CCCCCCChHHHHHHHHHHHhHHHhcCCCCCCCEEEEeCcCcCCCCHHHHHHHHHHHHHHHHhccCCceeEEEEECCCCCC
Confidence 4468999999999999988 4 2 35678888 99999999999999998876531 012367888777777
Q ss_pred HHHHHHHHHHHhCCCchh--HHHHHHHHHHHHHHh-cCCeEEEEEeCCCCccc--------ccccCcCCCC-C--C--CC
Q 035585 91 IKKIHGEIAEKLGLEFSE--EAESRRASRLYERLK-KEKMILVILDNIWKYLD--------LETVGIPFGD-D--H--RG 154 (183)
Q Consensus 91 ~~~~~~~i~~~l~~~~~~--~~~~~~~~~~~~~~~-~~~~~llvlD~~~~~~~--------~~~l~~~~~~-~--~--~~ 154 (183)
...++..++..++...+. .........+...+. .+++.+|||||+|.... +..+...+.. . . ..
T Consensus 100 ~~~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~llvlDe~~~l~~~~~~~~~~l~~l~~~~~~~~~~~~~~~ 179 (412)
T 1w5s_A 100 LYTILSLIVRQTGYPIQVRGAPALDILKALVDNLYVENHYLLVILDEFQSMLSSPRIAAEDLYTLLRVHEEIPSRDGVNR 179 (412)
T ss_dssp HHHHHHHHHHHHTCCCCCTTCCHHHHHHHHHHHHHHHTCEEEEEEESTHHHHSCTTSCHHHHHHHHTHHHHSCCTTSCCB
T ss_pred HHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHHhcCCeEEEEEeCHHHHhhccCcchHHHHHHHHHHHhcccCCCCce
Confidence 888899999888654331 112223334444442 36799999999987532 2212122211 1 2 34
Q ss_pred cEEEEEecChHHH
Q 035585 155 CKLLLTARDCNVL 167 (183)
Q Consensus 155 ~~iiitsr~~~~~ 167 (183)
..+|+|+++..+.
T Consensus 180 v~lI~~~~~~~~~ 192 (412)
T 1w5s_A 180 IGFLLVASDVRAL 192 (412)
T ss_dssp EEEEEEEEETHHH
T ss_pred EEEEEEeccccHH
Confidence 5588788766543
No 7
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=99.50 E-value=7.8e-14 Score=110.02 Aligned_cols=146 Identities=16% Similarity=0.228 Sum_probs=95.3
Q ss_pred CCcccccchHHHHHHHHHHhc----cCCccEEEEEeCCCCcHHHHHHHHHhHHhhhhc-ccceEEEEecCCcCHHHHHHH
Q 035585 23 KGYEAFKSRLSTLKSIQDALT----DVNVNIVGVYGMGGIGKTTLVKEFARQASEEKL-FDQVVFSEVSQTPDIKKIHGE 97 (183)
Q Consensus 23 ~~~~~~~gR~~~l~~l~~~l~----~~~~~~v~i~G~~G~GKTtL~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~ 97 (183)
..+..|+||+.+++.+.+++. ....+.++|+|++|+|||+|++.++..+..... ...++|+++........++..
T Consensus 17 ~~p~~~~gr~~e~~~l~~~l~~~~~~~~~~~vli~G~~G~GKTtl~~~l~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~ 96 (386)
T 2qby_A 17 YIPDELPHREDQIRKIASILAPLYREEKPNNIFIYGLTGTGKTAVVKFVLSKLHKKFLGKFKHVYINTRQIDTPYRVLAD 96 (386)
T ss_dssp CCCSCCTTCHHHHHHHHHSSGGGGGTCCCCCEEEEECTTSSHHHHHHHHHHHHHHHTCSSCEEEEEEHHHHCSHHHHHHH
T ss_pred cCCCCCCChHHHHHHHHHHHHHHHcCCCCCeEEEECCCCCCHHHHHHHHHHHHHHHhcCCceEEEEECCCCCCHHHHHHH
Confidence 445789999999999999886 345678999999999999999999988765411 224678887766666777777
Q ss_pred HHHHhCCCchh--HHHHHHHHHHHHHHhc-CCeEEEEEeCCCCccc------ccccCcCCCC-CCCCcEEEEEecChHHH
Q 035585 98 IAEKLGLEFSE--EAESRRASRLYERLKK-EKMILVILDNIWKYLD------LETVGIPFGD-DHRGCKLLLTARDCNVL 167 (183)
Q Consensus 98 i~~~l~~~~~~--~~~~~~~~~~~~~~~~-~~~~llvlD~~~~~~~------~~~l~~~~~~-~~~~~~iiitsr~~~~~ 167 (183)
++..++...+. .........+...+.. +++.+|+|||++.... +..+...+.. ...+..+|+++++..+.
T Consensus 97 i~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlilDE~~~l~~~~~~~~l~~l~~~~~~~~~~~~~~I~~~~~~~~~ 176 (386)
T 2qby_A 97 LLESLDVKVPFTGLSIAELYRRLVKAVRDYGSQVVIVLDEIDAFVKKYNDDILYKLSRINSEVNKSKISFIGITNDVKFV 176 (386)
T ss_dssp HTTTTSCCCCSSSCCHHHHHHHHHHHHHTCCSCEEEEEETHHHHHHSSCSTHHHHHHHHHHSCCC--EEEEEEESCGGGG
T ss_pred HHHHhCCCCCCCCCCHHHHHHHHHHHHhccCCeEEEEEcChhhhhccCcCHHHHHHhhchhhcCCCeEEEEEEECCCChH
Confidence 77766543221 1122333444444443 4589999999986531 2122111211 23356788888877654
Q ss_pred h
Q 035585 168 L 168 (183)
Q Consensus 168 ~ 168 (183)
.
T Consensus 177 ~ 177 (386)
T 2qby_A 177 D 177 (386)
T ss_dssp G
T ss_pred h
Confidence 3
No 8
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=99.48 E-value=1.6e-13 Score=108.58 Aligned_cols=138 Identities=14% Similarity=0.156 Sum_probs=91.6
Q ss_pred ccccchHHHHHHHHHHhc----cCCccEEEEEeCCCCcHHHHHHHHHhHHhhhhc------ccceEEEEecCCc-CHHHH
Q 035585 26 EAFKSRLSTLKSIQDALT----DVNVNIVGVYGMGGIGKTTLVKEFARQASEEKL------FDQVVFSEVSQTP-DIKKI 94 (183)
Q Consensus 26 ~~~~gR~~~l~~l~~~l~----~~~~~~v~i~G~~G~GKTtL~~~~~~~~~~~~~------~~~~~~~~~~~~~-~~~~~ 94 (183)
..|+||+++++.+.+++. ....+.++|+|++|+|||++++.+++.+..... ...++|+++.... +...+
T Consensus 20 ~~l~gr~~~~~~l~~~l~~~~~~~~~~~vll~G~~G~GKT~la~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~ 99 (384)
T 2qby_B 20 KEIPFREDILRDAAIAIRYFVKNEVKFSNLFLGLTGTGKTFVSKYIFNEIEEVKKEDEEYKDVKQAYVNCREVGGTPQAV 99 (384)
T ss_dssp SSCTTCHHHHHHHHHHHHHHHTTCCCCEEEEEECTTSSHHHHHHHHHHHHHHHHHHSSSSTTCEEEEEEHHHHCSCHHHH
T ss_pred CCCCChHHHHHHHHHHHHHHHcCCCCCcEEEECCCCCCHHHHHHHHHHHHHHHhhhhcCCCCceEEEEECccCCCCHHHH
Confidence 679999999999987765 345678999999999999999999988755311 3346788877666 77777
Q ss_pred HHHHHHHh-CCCch--hHHHHHHHHHHHHHHhcCCeEEEEEeCCCCccc---ccc-cCcCCCCCCCCcEEEEEecChH
Q 035585 95 HGEIAEKL-GLEFS--EEAESRRASRLYERLKKEKMILVILDNIWKYLD---LET-VGIPFGDDHRGCKLLLTARDCN 165 (183)
Q Consensus 95 ~~~i~~~l-~~~~~--~~~~~~~~~~~~~~~~~~~~~llvlD~~~~~~~---~~~-l~~~~~~~~~~~~iiitsr~~~ 165 (183)
+..++..+ +...+ ..........+...+...+. +|+|||++.+.. .+. + ..+.....+..+|+||++..
T Consensus 100 ~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~-vlilDEi~~l~~~~~~~~~l-~~l~~~~~~~~iI~~t~~~~ 175 (384)
T 2qby_B 100 LSSLAGKLTGFSVPKHGINLGEYIDKIKNGTRNIRA-IIYLDEVDTLVKRRGGDIVL-YQLLRSDANISVIMISNDIN 175 (384)
T ss_dssp HHHHHHHHHCSCCCSSSSCTHHHHHHHHHHHSSSCE-EEEEETTHHHHHSTTSHHHH-HHHHTSSSCEEEEEECSSTT
T ss_pred HHHHHHHhcCCCCCCCCCCHHHHHHHHHHHhccCCC-EEEEECHHHhccCCCCceeH-HHHhcCCcceEEEEEECCCc
Confidence 78888776 22111 11122334455555553444 999999987632 222 2 11111116778888888753
No 9
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=99.47 E-value=2.3e-13 Score=107.40 Aligned_cols=142 Identities=15% Similarity=0.192 Sum_probs=95.8
Q ss_pred CCcccccchHHHHHHHHHHhc----cCCccEEEEEeCCCCcHHHHHHHHHhHHhhhh----cccceEEEEecCCcCHHHH
Q 035585 23 KGYEAFKSRLSTLKSIQDALT----DVNVNIVGVYGMGGIGKTTLVKEFARQASEEK----LFDQVVFSEVSQTPDIKKI 94 (183)
Q Consensus 23 ~~~~~~~gR~~~l~~l~~~l~----~~~~~~v~i~G~~G~GKTtL~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~ 94 (183)
..+..|+||+++++.+..++. ....+.++|+|++|+|||++++.+++...... ....++|+++....+...+
T Consensus 16 ~~p~~~~gr~~~~~~l~~~l~~~~~~~~~~~vll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ 95 (387)
T 2v1u_A 16 YVPDVLPHREAELRRLAEVLAPALRGEKPSNALLYGLTGTGKTAVARLVLRRLEARASSLGVLVKPIYVNARHRETPYRV 95 (387)
T ss_dssp CCCSCCTTCHHHHHHHHHTTGGGTSSCCCCCEEECBCTTSSHHHHHHHHHHHHHHHHHHHTCCEEEEEEETTTSCSHHHH
T ss_pred cCCCCCCCHHHHHHHHHHHHHHHHcCCCCCcEEEECCCCCCHHHHHHHHHHHHHHHHhccCCCeEEEEEECCcCCCHHHH
Confidence 344789999999999999885 34567899999999999999999998875431 1234678888888888888
Q ss_pred HHHHHHHhCCCchh--HHHHHHHHHHHHHHh-cCCeEEEEEeCCCCccc----ccccCcCC---CCC--CCCcEEEEEec
Q 035585 95 HGEIAEKLGLEFSE--EAESRRASRLYERLK-KEKMILVILDNIWKYLD----LETVGIPF---GDD--HRGCKLLLTAR 162 (183)
Q Consensus 95 ~~~i~~~l~~~~~~--~~~~~~~~~~~~~~~-~~~~~llvlD~~~~~~~----~~~l~~~~---~~~--~~~~~iiitsr 162 (183)
+..++..++...+. .........+...+. .+++.+|+|||++.... .+.+...+ ... ..+..+|.+++
T Consensus 96 ~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlilDEi~~l~~~~~~~~~l~~l~~~~~~~~~~~~~~~I~~t~ 175 (387)
T 2v1u_A 96 ASAIAEAVGVRVPFTGLSVGEVYERLVKRLSRLRGIYIIVLDEIDFLPKRPGGQDLLYRITRINQELGDRVWVSLVGITN 175 (387)
T ss_dssp HHHHHHHHSCCCCSSCCCHHHHHHHHHHHHTTSCSEEEEEEETTTHHHHSTTHHHHHHHHHHGGGCC-----CEEEEECS
T ss_pred HHHHHHHhCCCCCCCCCCHHHHHHHHHHHHhccCCeEEEEEccHhhhcccCCCChHHHhHhhchhhcCCCceEEEEEEEC
Confidence 89999888654332 112233444555553 25689999999997642 12221111 111 34556778877
Q ss_pred Ch
Q 035585 163 DC 164 (183)
Q Consensus 163 ~~ 164 (183)
+.
T Consensus 176 ~~ 177 (387)
T 2v1u_A 176 SL 177 (387)
T ss_dssp CS
T ss_pred CC
Confidence 65
No 10
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=99.47 E-value=5.8e-13 Score=105.36 Aligned_cols=144 Identities=18% Similarity=0.214 Sum_probs=97.3
Q ss_pred CcccccchHHHHHHHHHHhcc----CCcc--EEEEEeCCCCcHHHHHHHHHhHHhhhhcccceEEEEecCCcCHHHHHHH
Q 035585 24 GYEAFKSRLSTLKSIQDALTD----VNVN--IVGVYGMGGIGKTTLVKEFARQASEEKLFDQVVFSEVSQTPDIKKIHGE 97 (183)
Q Consensus 24 ~~~~~~gR~~~l~~l~~~l~~----~~~~--~v~i~G~~G~GKTtL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 97 (183)
.+..++||+.+++.+..++.. .... .++|+|++|+|||+|++.++....... ...++++++....+...++..
T Consensus 15 ~p~~l~gr~~~~~~l~~~l~~~~~~~~~~~~~~li~G~~G~GKTtl~~~l~~~~~~~~-~~~~~~i~~~~~~~~~~~~~~ 93 (389)
T 1fnn_A 15 VPKRLPHREQQLQQLDILLGNWLRNPGHHYPRATLLGRPGTGKTVTLRKLWELYKDKT-TARFVYINGFIYRNFTAIIGE 93 (389)
T ss_dssp CCSCCTTCHHHHHHHHHHHHHHHHSTTSSCCEEEEECCTTSSHHHHHHHHHHHHTTSC-CCEEEEEETTTCCSHHHHHHH
T ss_pred CCCCCCChHHHHHHHHHHHHHHHcCCCCCCCeEEEECCCCCCHHHHHHHHHHHHhhhc-CeeEEEEeCccCCCHHHHHHH
Confidence 346799999999999988863 3334 899999999999999999998876531 124678888777777888888
Q ss_pred HHHHhCCCchh--HHHHHHHHHHHHHHh-cCCeEEEEEeCCCCcc--cccccCcCCCCCC----CCcEEEEEecChHHHh
Q 035585 98 IAEKLGLEFSE--EAESRRASRLYERLK-KEKMILVILDNIWKYL--DLETVGIPFGDDH----RGCKLLLTARDCNVLL 168 (183)
Q Consensus 98 i~~~l~~~~~~--~~~~~~~~~~~~~~~-~~~~~llvlD~~~~~~--~~~~l~~~~~~~~----~~~~iiitsr~~~~~~ 168 (183)
++..++...+. .........+...+. .+++.+|+|||++... .+..+...+.... .+..+|+++++..+..
T Consensus 94 l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlilDE~~~l~~~~~~~L~~~~~~~~~~~~~~~~iI~~~~~~~~~~ 173 (389)
T 1fnn_A 94 IARSLNIPFPRRGLSRDEFLALLVEHLRERDLYMFLVLDDAFNLAPDILSTFIRLGQEADKLGAFRIALVIVGHNDAVLN 173 (389)
T ss_dssp HHHHTTCCCCSSCCCHHHHHHHHHHHHHHTTCCEEEEEETGGGSCHHHHHHHHHHTTCHHHHSSCCEEEEEEESSTHHHH
T ss_pred HHHHhCccCCCCCCCHHHHHHHHHHHHhhcCCeEEEEEECccccchHHHHHHHHHHHhCCCCCcCCEEEEEEECCchHHH
Confidence 88887653321 122233333443333 3568999999998763 2333323332211 3667888888776544
No 11
>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20
Probab=99.44 E-value=3e-13 Score=105.58 Aligned_cols=142 Identities=13% Similarity=0.211 Sum_probs=86.7
Q ss_pred hhhcCCCcccccchHHHHHHHHHHhccCCccEEEEEeCCCCcHHHHHHHHHhHHhhhhcccceEEEEecCC-----cCHH
Q 035585 18 WLKSNKGYEAFKSRLSTLKSIQDALTDVNVNIVGVYGMGGIGKTTLVKEFARQASEEKLFDQVVFSEVSQT-----PDIK 92 (183)
Q Consensus 18 ~~~~~~~~~~~~gR~~~l~~l~~~l~~~~~~~v~i~G~~G~GKTtL~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~ 92 (183)
.+.|+..+..|+||+++++.|.+ +.. ++++|+|++|+|||+|++.+.+.... ..+|+++... .+..
T Consensus 5 ~~~~~~~~~~~~gR~~el~~L~~-l~~---~~v~i~G~~G~GKT~L~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~ 75 (357)
T 2fna_A 5 DTSPKDNRKDFFDREKEIEKLKG-LRA---PITLVLGLRRTGKSSIIKIGINELNL-----PYIYLDLRKFEERNYISYK 75 (357)
T ss_dssp CSSCCCSGGGSCCCHHHHHHHHH-TCS---SEEEEEESTTSSHHHHHHHHHHHHTC-----CEEEEEGGGGTTCSCCCHH
T ss_pred CCCCCCCHHHhcChHHHHHHHHH-hcC---CcEEEECCCCCCHHHHHHHHHHhcCC-----CEEEEEchhhccccCCCHH
Confidence 34566677889999999999999 755 69999999999999999999887542 2577777642 2334
Q ss_pred HHHHHHHHHhCC------------------Cchh-----H---HHHHHHHHHHHHHhcC--CeEEEEEeCCCCccc----
Q 035585 93 KIHGEIAEKLGL------------------EFSE-----E---AESRRASRLYERLKKE--KMILVILDNIWKYLD---- 140 (183)
Q Consensus 93 ~~~~~i~~~l~~------------------~~~~-----~---~~~~~~~~~~~~~~~~--~~~llvlD~~~~~~~---- 140 (183)
.++..+.+.+.. ..+. . ........+...+... ++.+|||||++....
T Consensus 76 ~~~~~l~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~vlvlDe~~~~~~~~~~ 155 (357)
T 2fna_A 76 DFLLELQKEINKLVKRLPSLLKALKNIQGIVIMGNEIKFNWNRKDRLSFANLLESFEQASKDNVIIVLDEAQELVKLRGV 155 (357)
T ss_dssp HHHHHHHHHHHHHHHHCTTHHHHTTTSTTEEECSSSEEEC-----CCCHHHHHHHHHHTCSSCEEEEEETGGGGGGCTTC
T ss_pred HHHHHHHHHHHHHhhhhhHHHHHhcccceEEecceEEEeccCCcchhhHHHHHHHHHhcCCCCeEEEEECHHHhhccCch
Confidence 444444333210 0000 0 0011123344444321 489999999987542
Q ss_pred -ccccCcCCCCCCCCcEEEEEecChHHHh
Q 035585 141 -LETVGIPFGDDHRGCKLLLTARDCNVLL 168 (183)
Q Consensus 141 -~~~l~~~~~~~~~~~~iiitsr~~~~~~ 168 (183)
+..++..+.+...+..+|+|++......
T Consensus 156 ~~~~~l~~~~~~~~~~~~i~~g~~~~~l~ 184 (357)
T 2fna_A 156 NLLPALAYAYDNLKRIKFIMSGSEMGLLY 184 (357)
T ss_dssp CCHHHHHHHHHHCTTEEEEEEESSHHHHH
T ss_pred hHHHHHHHHHHcCCCeEEEEEcCchHHHH
Confidence 1111122222224678999999876543
No 12
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=99.44 E-value=1.1e-12 Score=95.63 Aligned_cols=133 Identities=14% Similarity=0.160 Sum_probs=85.2
Q ss_pred hhhhhcCCCcccccchHHHHHHHHHHhccCCccEEEEEeCCCCcHHHHHHHHHhHHhhhhcccceEEEEecCCcCHHHHH
Q 035585 16 EVWLKSNKGYEAFKSRLSTLKSIQDALTDVNVNIVGVYGMGGIGKTTLVKEFARQASEEKLFDQVVFSEVSQTPDIKKIH 95 (183)
Q Consensus 16 ~~~~~~~~~~~~~~gR~~~l~~l~~~l~~~~~~~v~i~G~~G~GKTtL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 95 (183)
+....+|.....++||++.++.+..++...+.+.++|+|++|+|||++++.+++.+.........+.+++........+.
T Consensus 7 ~~~~~~p~~~~~~~g~~~~~~~l~~~l~~~~~~~~ll~G~~G~GKT~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (226)
T 2chg_A 7 WVEKYRPRTLDEVVGQDEVIQRLKGYVERKNIPHLLFSGPPGTGKTATAIALARDLFGENWRDNFIEMNASDERGIDVVR 86 (226)
T ss_dssp HHHHTSCSSGGGCCSCHHHHHHHHHHHHTTCCCCEEEECSTTSSHHHHHHHHHHHHHGGGGGGGEEEEETTCTTCHHHHH
T ss_pred HHHhcCCCCHHHHcCcHHHHHHHHHHHhCCCCCeEEEECCCCCCHHHHHHHHHHHHhccccccceEEeccccccChHHHH
Confidence 33445667778899999999999999986666669999999999999999999887554222334445544433322211
Q ss_pred HHHHHHhCCCchhHHHHHHHHHHHHH--HhcCCeEEEEEeCCCCcc--cccccCcCCCCCCCCcEEEEEecChH
Q 035585 96 GEIAEKLGLEFSEEAESRRASRLYER--LKKEKMILVILDNIWKYL--DLETVGIPFGDDHRGCKLLLTARDCN 165 (183)
Q Consensus 96 ~~i~~~l~~~~~~~~~~~~~~~~~~~--~~~~~~~llvlD~~~~~~--~~~~l~~~~~~~~~~~~iiitsr~~~ 165 (183)
..+. ..... ....++.+|+|||++... ....+...+.....++.+|+|++...
T Consensus 87 ~~~~-----------------~~~~~~~~~~~~~~vliiDe~~~l~~~~~~~l~~~l~~~~~~~~~i~~~~~~~ 143 (226)
T 2chg_A 87 HKIK-----------------EFARTAPIGGAPFKIIFLDEADALTADAQAALRRTMEMYSKSCRFILSCNYVS 143 (226)
T ss_dssp HHHH-----------------HHHTSCCSTTCSCEEEEEETGGGSCHHHHHHHHHHHHHTTTTEEEEEEESCGG
T ss_pred HHHH-----------------HHhcccCCCccCceEEEEeChhhcCHHHHHHHHHHHHhcCCCCeEEEEeCChh
Confidence 1111 11100 112578999999998763 23334333434455677888887653
No 13
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=99.39 E-value=1.4e-12 Score=101.04 Aligned_cols=113 Identities=11% Similarity=0.089 Sum_probs=81.2
Q ss_pred ccchHHHHHHHHHHhc----cCCccEEEEEeCCCCcHHHHHHHHHhHHhhhhc-----ccceEEEEecCCcCHHHHHHHH
Q 035585 28 FKSRLSTLKSIQDALT----DVNVNIVGVYGMGGIGKTTLVKEFARQASEEKL-----FDQVVFSEVSQTPDIKKIHGEI 98 (183)
Q Consensus 28 ~~gR~~~l~~l~~~l~----~~~~~~v~i~G~~G~GKTtL~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~i 98 (183)
+.+|++|++.+...+. ...++.+.|+|++|+|||++++.++..+..... .-.++++++....+...++..|
T Consensus 22 L~~Re~E~~~i~~~L~~~i~~~~~~~lli~GpPGTGKT~~v~~v~~~L~~~~~~~~~~~~~~v~INc~~~~t~~~~~~~I 101 (318)
T 3te6_A 22 LKSQVEDFTRIFLPIYDSLMSSQNKLFYITNADDSTKFQLVNDVMDELITSSARKELPIFDYIHIDALELAGMDALYEKI 101 (318)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTCCCEEEEECCCSHHHHHHHHHHHHHHHHTTTTTSSCCEEEEEEETTCCC--HHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCCHHHHHHHHHHHHHHHhhhccCCceEEEEEeccccCCHHHHHHHH
Confidence 6799999999998776 567789999999999999999999999865311 1136788888888888888999
Q ss_pred HHHhCCCchh-HHHHHHHHHHHHHH--hcCCeEEEEEeCCCCccc
Q 035585 99 AEKLGLEFSE-EAESRRASRLYERL--KKEKMILVILDNIWKYLD 140 (183)
Q Consensus 99 ~~~l~~~~~~-~~~~~~~~~~~~~~--~~~~~~llvlD~~~~~~~ 140 (183)
++++...... ......+..++..+ ...++.+++|||+|.+.+
T Consensus 102 ~~~L~g~~~~~~~~~~~L~~~f~~~~~~~~~~~ii~lDE~d~l~~ 146 (318)
T 3te6_A 102 WFAISKENLCGDISLEALNFYITNVPKAKKRKTLILIQNPENLLS 146 (318)
T ss_dssp HHHHSCCC--CCCCHHHHHHHHHHSCGGGSCEEEEEEECCSSSCC
T ss_pred HHHhcCCCCCchHHHHHHHHHHHHhhhccCCceEEEEecHHHhhc
Confidence 9988543211 11223344444443 236789999999998753
No 14
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=99.34 E-value=8e-12 Score=92.02 Aligned_cols=143 Identities=12% Similarity=0.160 Sum_probs=81.3
Q ss_pred hhhhhcCCCcccccchHHHHHHHHHHhccC-CccEEEEEeCCCCcHHHHHHHHHhHHhhhhcccceEEEEecCCcCHHHH
Q 035585 16 EVWLKSNKGYEAFKSRLSTLKSIQDALTDV-NVNIVGVYGMGGIGKTTLVKEFARQASEEKLFDQVVFSEVSQTPDIKKI 94 (183)
Q Consensus 16 ~~~~~~~~~~~~~~gR~~~l~~l~~~l~~~-~~~~v~i~G~~G~GKTtL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 94 (183)
......|.....++||+.+++.+..++... ..+.++|+|++|+|||++++.+++.+......... .+.. ...
T Consensus 13 ~~~~~~p~~~~~~~g~~~~~~~l~~~l~~~~~~~~~ll~G~~G~GKT~l~~~~~~~~~~~~~~~~~---~~~~---~~~- 85 (250)
T 1njg_A 13 LARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNCETGITAT---PCGV---CDN- 85 (250)
T ss_dssp HHHHTCCCSGGGCCSCHHHHHHHHHHHHHTCCCSEEEEECSTTSCHHHHHHHHHHHHHCTTCSCSS---CCSC---SHH-
T ss_pred HhhccCCccHHHHhCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCC---CCcc---cHH-
Confidence 344455666778999999999999988743 34689999999999999999999877543111000 0000 000
Q ss_pred HHHHHHHhC-----CCchhHHHHHHHHHHHHHHh----cCCeEEEEEeCCCCcc--cccccCcCCCCCCCCcEEEEEecC
Q 035585 95 HGEIAEKLG-----LEFSEEAESRRASRLYERLK----KEKMILVILDNIWKYL--DLETVGIPFGDDHRGCKLLLTARD 163 (183)
Q Consensus 95 ~~~i~~~l~-----~~~~~~~~~~~~~~~~~~~~----~~~~~llvlD~~~~~~--~~~~l~~~~~~~~~~~~iiitsr~ 163 (183)
...+..... ..............+...+. ..++.+|||||++... .+..+...+.....++.+|+++++
T Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlviDe~~~l~~~~~~~l~~~l~~~~~~~~~i~~t~~ 165 (250)
T 1njg_A 86 CREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTD 165 (250)
T ss_dssp HHHHHTTCCSSEEEEETTCGGGHHHHHHHHHSCCCSCSSSSSEEEEEETGGGSCHHHHHHHHHHHHSCCTTEEEEEEESC
T ss_pred HHHHhccCCcceEEecCcccccHHHHHHHHHHhhhchhcCCceEEEEECcccccHHHHHHHHHHHhcCCCceEEEEEeCC
Confidence 001100000 00000011112222333221 2467999999998753 344444444444567788888876
Q ss_pred hH
Q 035585 164 CN 165 (183)
Q Consensus 164 ~~ 165 (183)
..
T Consensus 166 ~~ 167 (250)
T 1njg_A 166 PQ 167 (250)
T ss_dssp GG
T ss_pred hH
Confidence 54
No 15
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=99.31 E-value=2.3e-11 Score=86.53 Aligned_cols=106 Identities=15% Similarity=0.210 Sum_probs=68.7
Q ss_pred hcCCCcccccchHHHHHHHHHHhccCCccEEEEEeCCCCcHHHHHHHHHhHHhhhhc-----ccceEEEEecCCcCHHHH
Q 035585 20 KSNKGYEAFKSRLSTLKSIQDALTDVNVNIVGVYGMGGIGKTTLVKEFARQASEEKL-----FDQVVFSEVSQTPDIKKI 94 (183)
Q Consensus 20 ~~~~~~~~~~gR~~~l~~l~~~l~~~~~~~v~i~G~~G~GKTtL~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~ 94 (183)
..+.....++||+++++.+.+.+.....+.++|+|++|+|||++++.+++.+..... ...++++++..
T Consensus 16 ~~~~~~~~~~g~~~~~~~l~~~l~~~~~~~~ll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------- 88 (195)
T 1jbk_A 16 AEQGKLDPVIGRDEEIRRTIQVLQRRTKNNPVLIGEPGVGKTAIVEGLAQRIINGEVPEGLKGRRVLALDMGA------- 88 (195)
T ss_dssp HHTTCSCCCCSCHHHHHHHHHHHTSSSSCEEEEECCTTSCHHHHHHHHHHHHHHTCSCGGGTTCEEEEECHHH-------
T ss_pred HhhccccccccchHHHHHHHHHHhcCCCCceEEECCCCCCHHHHHHHHHHHHHhCCCchhhcCCcEEEeeHHH-------
Confidence 345667789999999999999988766788999999999999999999988754211 11234443321
Q ss_pred HHHHHHHhCCCchhHHHHHHHHHHHHHH-hcCCeEEEEEeCCCCc
Q 035585 95 HGEIAEKLGLEFSEEAESRRASRLYERL-KKEKMILVILDNIWKY 138 (183)
Q Consensus 95 ~~~i~~~l~~~~~~~~~~~~~~~~~~~~-~~~~~~llvlD~~~~~ 138 (183)
+. ...............+...+ ...++.+|+|||++.+
T Consensus 89 ---~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~iDe~~~l 127 (195)
T 1jbk_A 89 ---LV---AGAKYRGEFEERLKGVLNDLAKQEGNVILFIDELHTM 127 (195)
T ss_dssp ---HH---TTTCSHHHHHHHHHHHHHHHHHSTTTEEEEEETGGGG
T ss_pred ---Hh---ccCCccccHHHHHHHHHHHHhhcCCCeEEEEeCHHHH
Confidence 00 00000111122233333333 3366889999999876
No 16
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.28 E-value=8e-12 Score=96.41 Aligned_cols=133 Identities=20% Similarity=0.150 Sum_probs=84.3
Q ss_pred hhhhhcCCCcccccchHHHHHHHHHHhccCCccEEEEEeCCCCcHHHHHHHHHhHHhhhhcccceEEEEecCCcCHHHHH
Q 035585 16 EVWLKSNKGYEAFKSRLSTLKSIQDALTDVNVNIVGVYGMGGIGKTTLVKEFARQASEEKLFDQVVFSEVSQTPDIKKIH 95 (183)
Q Consensus 16 ~~~~~~~~~~~~~~gR~~~l~~l~~~l~~~~~~~v~i~G~~G~GKTtL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 95 (183)
......|.....++||+..++.+.+++.+.+.+.++++|++|+|||++++.+++.+........+++++.+....... .
T Consensus 11 ~~~~~~p~~~~~~~g~~~~~~~l~~~l~~~~~~~~ll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~~~~~~~~~~~~-i 89 (323)
T 1sxj_B 11 WVEKYRPQVLSDIVGNKETIDRLQQIAKDGNMPHMIISGMPGIGKTTSVHCLAHELLGRSYADGVLELNASDDRGIDV-V 89 (323)
T ss_dssp HHHHTCCSSGGGCCSCTHHHHHHHHHHHSCCCCCEEEECSTTSSHHHHHHHHHHHHHGGGHHHHEEEECTTSCCSHHH-H
T ss_pred HHHhcCCCCHHHHHCCHHHHHHHHHHHHcCCCCeEEEECcCCCCHHHHHHHHHHHhcCCcccCCEEEecCccccChHH-H
Confidence 344455666788999999999999998866655699999999999999999998875432222344555443322211 1
Q ss_pred HHHHHHhCCCchhHHHHHHHHHHHH---HHhcCCeEEEEEeCCCCcc--cccccCcCCCCCCCCcEEEEEecChH
Q 035585 96 GEIAEKLGLEFSEEAESRRASRLYE---RLKKEKMILVILDNIWKYL--DLETVGIPFGDDHRGCKLLLTARDCN 165 (183)
Q Consensus 96 ~~i~~~l~~~~~~~~~~~~~~~~~~---~~~~~~~~llvlD~~~~~~--~~~~l~~~~~~~~~~~~iiitsr~~~ 165 (183)
+.+++. +.. .+..+++.+|||||++.+. ..+.+...+.....++.+|+++.+..
T Consensus 90 ~~~~~~----------------~~~~~~~~~~~~~~viiiDe~~~l~~~~~~~L~~~le~~~~~~~~il~~~~~~ 148 (323)
T 1sxj_B 90 RNQIKH----------------FAQKKLHLPPGKHKIVILDEADSMTAGAQQALRRTMELYSNSTRFAFACNQSN 148 (323)
T ss_dssp HTHHHH----------------HHHBCCCCCTTCCEEEEEESGGGSCHHHHHTTHHHHHHTTTTEEEEEEESCGG
T ss_pred HHHHHH----------------HHhccccCCCCCceEEEEECcccCCHHHHHHHHHHHhccCCCceEEEEeCChh
Confidence 111111 110 0102458999999998763 34444444444456778888887643
No 17
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=99.21 E-value=2.7e-11 Score=93.61 Aligned_cols=133 Identities=14% Similarity=0.121 Sum_probs=83.1
Q ss_pred hhhhhcCCCcccccchHHHHHHHHHHhccCCccEEEEEeCCCCcHHHHHHHHHhHHhhhhcccceEEEEecCCcCHHHHH
Q 035585 16 EVWLKSNKGYEAFKSRLSTLKSIQDALTDVNVNIVGVYGMGGIGKTTLVKEFARQASEEKLFDQVVFSEVSQTPDIKKIH 95 (183)
Q Consensus 16 ~~~~~~~~~~~~~~gR~~~l~~l~~~l~~~~~~~v~i~G~~G~GKTtL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 95 (183)
+.....|.....++|++..++.+.+++.+.+.+.++++|++|+|||++++.+++.+........++.++++.......+
T Consensus 15 ~~~k~~p~~~~~~~g~~~~~~~l~~~l~~~~~~~~ll~G~~G~GKT~la~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~- 93 (327)
T 1iqp_A 15 WVEKYRPQRLDDIVGQEHIVKRLKHYVKTGSMPHLLFAGPPGVGKTTAALALARELFGENWRHNFLELNASDERGINVI- 93 (327)
T ss_dssp HHHHTCCCSTTTCCSCHHHHHHHHHHHHHTCCCEEEEESCTTSSHHHHHHHHHHHHHGGGHHHHEEEEETTCHHHHHTT-
T ss_pred hhhccCCCCHHHhhCCHHHHHHHHHHHHcCCCCeEEEECcCCCCHHHHHHHHHHHhcCCcccCceEEeeccccCchHHH-
Confidence 4444566777889999999999999988666666999999999999999999988754321122344443321111000
Q ss_pred HHHHHHhCCCchhHHHHHHHHHHHHH--HhcCCeEEEEEeCCCCcc--cccccCcCCCCCCCCcEEEEEecChH
Q 035585 96 GEIAEKLGLEFSEEAESRRASRLYER--LKKEKMILVILDNIWKYL--DLETVGIPFGDDHRGCKLLLTARDCN 165 (183)
Q Consensus 96 ~~i~~~l~~~~~~~~~~~~~~~~~~~--~~~~~~~llvlD~~~~~~--~~~~l~~~~~~~~~~~~iiitsr~~~ 165 (183)
.. ........ +...++.+|++||++.+. ..+.+...+.....++++|+++....
T Consensus 94 ~~----------------~~~~~~~~~~~~~~~~~vliiDe~~~l~~~~~~~L~~~le~~~~~~~~i~~~~~~~ 151 (327)
T 1iqp_A 94 RE----------------KVKEFARTKPIGGASFKIIFLDEADALTQDAQQALRRTMEMFSSNVRFILSCNYSS 151 (327)
T ss_dssp HH----------------HHHHHHHSCCGGGCSCEEEEEETGGGSCHHHHHHHHHHHHHTTTTEEEEEEESCGG
T ss_pred HH----------------HHHHHHhhCCcCCCCCeEEEEeCCCcCCHHHHHHHHHHHHhcCCCCeEEEEeCCcc
Confidence 00 00111110 112568899999998763 34444444444455778888886643
No 18
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=99.18 E-value=1.5e-10 Score=82.09 Aligned_cols=54 Identities=19% Similarity=0.225 Sum_probs=46.7
Q ss_pred hcCCCcccccchHHHHHHHHHHhccCCccEEEEEeCCCCcHHHHHHHHHhHHhh
Q 035585 20 KSNKGYEAFKSRLSTLKSIQDALTDVNVNIVGVYGMGGIGKTTLVKEFARQASE 73 (183)
Q Consensus 20 ~~~~~~~~~~gR~~~l~~l~~~l~~~~~~~v~i~G~~G~GKTtL~~~~~~~~~~ 73 (183)
..+.....++||+.++..+.+.+.+...+.++|+|++|+|||++++.+++.+..
T Consensus 16 ~~~~~~~~~~g~~~~~~~l~~~l~~~~~~~vll~G~~G~GKT~la~~~~~~~~~ 69 (187)
T 2p65_A 16 ARAGKLDPVIGRDTEIRRAIQILSRRTKNNPILLGDPGVGKTAIVEGLAIKIVQ 69 (187)
T ss_dssp HHTTCSCCCCSCHHHHHHHHHHHTSSSSCEEEEESCGGGCHHHHHHHHHHHHHT
T ss_pred HhccccchhhcchHHHHHHHHHHhCCCCCceEEECCCCCCHHHHHHHHHHHHHh
Confidence 345566789999999999999988766788999999999999999999988754
No 19
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A
Probab=99.17 E-value=8e-11 Score=90.61 Aligned_cols=131 Identities=12% Similarity=0.163 Sum_probs=82.9
Q ss_pred hhhcCCCcccccchHHHHHHHHHHhccCCccEEEEEeCCCCcHHHHHHHHHhHHhhhhcccceEEEEecCCcCHHHHHHH
Q 035585 18 WLKSNKGYEAFKSRLSTLKSIQDALTDVNVNIVGVYGMGGIGKTTLVKEFARQASEEKLFDQVVFSEVSQTPDIKKIHGE 97 (183)
Q Consensus 18 ~~~~~~~~~~~~gR~~~l~~l~~~l~~~~~~~v~i~G~~G~GKTtL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 97 (183)
....|.....++|++..++.+.+++.+.+.+.++++|++|+|||++++.+++.+.........+.++++.......+.
T Consensus 9 ~k~~p~~~~~~~g~~~~~~~l~~~l~~~~~~~~ll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~-- 86 (319)
T 2chq_A 9 EKYRPRTLDEVVGQDEVIQRLKGYVERKNIPHLLFSGPPGTGKTATAIALARDLFGENWRDNFIEMNASDERGIDVVR-- 86 (319)
T ss_dssp TTTSCSSGGGSCSCHHHHHHHHTTTTTTCCCCEEEESSSSSSHHHHHHHHHHHHHTTCHHHHCEEEETTSTTCTTTSS--
T ss_pred HhcCCCCHHHHhCCHHHHHHHHHHHhCCCCCeEEEECcCCcCHHHHHHHHHHHhcCCcccCCeEEEeCccccChHHHH--
Confidence 334566667899999999999999886665569999999999999999999887433111224455554422111000
Q ss_pred HHHHhCCCchhHHHHHHHHHHHHH--HhcCCeEEEEEeCCCCcc--cccccCcCCCCCCCCcEEEEEecChH
Q 035585 98 IAEKLGLEFSEEAESRRASRLYER--LKKEKMILVILDNIWKYL--DLETVGIPFGDDHRGCKLLLTARDCN 165 (183)
Q Consensus 98 i~~~l~~~~~~~~~~~~~~~~~~~--~~~~~~~llvlD~~~~~~--~~~~l~~~~~~~~~~~~iiitsr~~~ 165 (183)
......... +...++.+++|||++.+. ..+.+...+.....++.+|+++....
T Consensus 87 ---------------~~~~~~~~~~~~~~~~~~vliiDe~~~l~~~~~~~L~~~le~~~~~~~~i~~~~~~~ 143 (319)
T 2chq_A 87 ---------------HKIKEFARTAPIGGAPFKIIFLDEADALTADAQAALRRTMEMYSKSCRFILSCNYVS 143 (319)
T ss_dssp ---------------HHHHHHHHSCCSSSCCCEEEEEETGGGSCHHHHHTTGGGTSSSSSSEEEEEEESCGG
T ss_pred ---------------HHHHHHHhcCCCCCCCceEEEEeCCCcCCHHHHHHHHHHHHhcCCCCeEEEEeCChh
Confidence 000111101 112568899999998763 34555555555556778888876544
No 20
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=99.02 E-value=6.8e-10 Score=84.42 Aligned_cols=98 Identities=18% Similarity=0.236 Sum_probs=63.8
Q ss_pred cCCCcccccchHHHHHHHHHHhcc-------------CCccEEEEEeCCCCcHHHHHHHHHhHHhhhhcccceEEEEecC
Q 035585 21 SNKGYEAFKSRLSTLKSIQDALTD-------------VNVNIVGVYGMGGIGKTTLVKEFARQASEEKLFDQVVFSEVSQ 87 (183)
Q Consensus 21 ~~~~~~~~~gR~~~l~~l~~~l~~-------------~~~~~v~i~G~~G~GKTtL~~~~~~~~~~~~~~~~~~~~~~~~ 87 (183)
|......++|.+..++.|.+.+.. .....++|+|++|+|||+|++.++..+... .+.+++..
T Consensus 12 ~~~~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ll~G~~GtGKT~la~~la~~~~~~-----~~~v~~~~ 86 (285)
T 3h4m_A 12 PNVRYEDIGGLEKQMQEIREVVELPLKHPELFEKVGIEPPKGILLYGPPGTGKTLLAKAVATETNAT-----FIRVVGSE 86 (285)
T ss_dssp CCCCGGGSCSCHHHHHHHHHHTHHHHHCHHHHHHHCCCCCSEEEEESSSSSSHHHHHHHHHHHTTCE-----EEEEEGGG
T ss_pred CCCCHHHhcCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCeEEEECCCCCcHHHHHHHHHHHhCCC-----EEEEehHH
Confidence 344566789999999999887642 456789999999999999999998875432 23333322
Q ss_pred CcCHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHHhcCCeEEEEEeCCCCc
Q 035585 88 TPDIKKIHGEIAEKLGLEFSEEAESRRASRLYERLKKEKMILVILDNIWKY 138 (183)
Q Consensus 88 ~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~llvlD~~~~~ 138 (183)
... .... ........++.......+.+|+|||++.+
T Consensus 87 ~~~--------------~~~~-~~~~~~~~~~~~~~~~~~~vl~iDEid~l 122 (285)
T 3h4m_A 87 LVK--------------KFIG-EGASLVKDIFKLAKEKAPSIIFIDEIDAI 122 (285)
T ss_dssp GCC--------------CSTT-HHHHHHHHHHHHHHHTCSEEEEEETTHHH
T ss_pred HHH--------------hccc-hHHHHHHHHHHHHHHcCCeEEEEECHHHh
Confidence 111 0111 11223344444454467789999999764
No 21
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=99.02 E-value=9.7e-10 Score=86.42 Aligned_cols=56 Identities=14% Similarity=0.171 Sum_probs=45.7
Q ss_pred hhhcCCCcccccchHHHHHHHHHHhccCC-ccEEEEEeCCCCcHHHHHHHHHhHHhh
Q 035585 18 WLKSNKGYEAFKSRLSTLKSIQDALTDVN-VNIVGVYGMGGIGKTTLVKEFARQASE 73 (183)
Q Consensus 18 ~~~~~~~~~~~~gR~~~l~~l~~~l~~~~-~~~v~i~G~~G~GKTtL~~~~~~~~~~ 73 (183)
....|.....++||+..++.+.+.+...+ .+.++|+|++|+|||++++.++..+..
T Consensus 8 ~k~rp~~~~~~vg~~~~~~~L~~~l~~~~~~~~~ll~G~~G~GKT~la~~la~~l~~ 64 (373)
T 1jr3_A 8 RKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNC 64 (373)
T ss_dssp HHTCCCSTTTSCSCHHHHHHHHHHHHHTCCCSEEEEESCTTSSHHHHHHHHHHHHSC
T ss_pred HhhCCCchhhccCcHHHHHHHHHHHHhCCCCeEEEEECCCCCCHHHHHHHHHHHhCC
Confidence 34455566779999999999999887443 467899999999999999999887754
No 22
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.01 E-value=3.5e-10 Score=88.35 Aligned_cols=144 Identities=13% Similarity=0.111 Sum_probs=81.1
Q ss_pred hhhhhcCCCcccccchHHHHHHHHHHhccCCccEEEEEeCCCCcHHHHHHHHHhHHhhhh-cccceEEEEecCCcCHHHH
Q 035585 16 EVWLKSNKGYEAFKSRLSTLKSIQDALTDVNVNIVGVYGMGGIGKTTLVKEFARQASEEK-LFDQVVFSEVSQTPDIKKI 94 (183)
Q Consensus 16 ~~~~~~~~~~~~~~gR~~~l~~l~~~l~~~~~~~v~i~G~~G~GKTtL~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~ 94 (183)
+.....|.....++|++..++.+..++.....+.++|+|++|+|||++++.++..+.... ....+..++++.......+
T Consensus 27 ~~~k~~p~~~~~i~g~~~~~~~l~~~l~~~~~~~~ll~G~~G~GKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~ 106 (353)
T 1sxj_D 27 WVEKYRPKNLDEVTAQDHAVTVLKKTLKSANLPHMLFYGPPGTGKTSTILALTKELYGPDLMKSRILELNASDERGISIV 106 (353)
T ss_dssp HHHHTCCSSTTTCCSCCTTHHHHHHHTTCTTCCCEEEECSTTSSHHHHHHHHHHHHHHHHHHTTSEEEECSSSCCCHHHH
T ss_pred HHHhcCCCCHHHhhCCHHHHHHHHHHHhcCCCCEEEEECCCCCCHHHHHHHHHHHhCCCcccccceEEEccccccchHHH
Confidence 344456677788999999999999998866555599999999999999999999875321 1122444444433232221
Q ss_pred HHHHHHHhCCCchhHHHHHHHHHHHHHHhcCCeEEEEEeCCCCcc--cccccCcCCCCCCCCcEEEEEecCh
Q 035585 95 HGEIAEKLGLEFSEEAESRRASRLYERLKKEKMILVILDNIWKYL--DLETVGIPFGDDHRGCKLLLTARDC 164 (183)
Q Consensus 95 ~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~llvlD~~~~~~--~~~~l~~~~~~~~~~~~iiitsr~~ 164 (183)
......+......... ..........+..+|+|||++.+. ....+...+......+++|+++...
T Consensus 107 -~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~vliiDE~~~l~~~~~~~Ll~~le~~~~~~~~il~~~~~ 173 (353)
T 1sxj_D 107 -REKVKNFARLTVSKPS----KHDLENYPCPPYKIIILDEADSMTADAQSALRRTMETYSGVTRFCLICNYV 173 (353)
T ss_dssp -TTHHHHHHHSCCCCCC----TTHHHHSCCCSCEEEEETTGGGSCHHHHHHHHHHHHHTTTTEEEEEEESCG
T ss_pred -HHHHHHHhhhcccccc----hhhcccCCCCCceEEEEECCCccCHHHHHHHHHHHHhcCCCceEEEEeCch
Confidence 1111111000000000 000011112456799999998763 2333433333334456677776543
No 23
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=98.99 E-value=4.2e-09 Score=85.28 Aligned_cols=66 Identities=21% Similarity=0.224 Sum_probs=48.6
Q ss_pred ccccccchhhhhhcCCCcccccchHHHH---HHHHHHhccCCccEEEEEeCCCCcHHHHHHHHHhHHhh
Q 035585 8 IFYRTIAEEVWLKSNKGYEAFKSRLSTL---KSIQDALTDVNVNIVGVYGMGGIGKTTLVKEFARQASE 73 (183)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~gR~~~l---~~l~~~l~~~~~~~v~i~G~~G~GKTtL~~~~~~~~~~ 73 (183)
++.....+......|.....++|.+..+ ..|...+...+.+.++|+|++|+||||+|+.+++....
T Consensus 8 ~~~~~~~pla~r~rP~~l~~ivGq~~~~~~~~~L~~~i~~~~~~~vLL~GppGtGKTtlAr~ia~~~~~ 76 (447)
T 3pvs_A 8 FSDNTFQPLAARMRPENLAQYIGQQHLLAAGKPLPRAIEAGHLHSMILWGPPGTGKTTLAEVIARYANA 76 (447)
T ss_dssp ------CCHHHHTCCCSTTTCCSCHHHHSTTSHHHHHHHHTCCCEEEEECSTTSSHHHHHHHHHHHTTC
T ss_pred hcccccCChHHHhCCCCHHHhCCcHHHHhchHHHHHHHHcCCCcEEEEECCCCCcHHHHHHHHHHHhCC
Confidence 3333333344445567778899999998 78888887777789999999999999999999987643
No 24
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=98.98 E-value=2.4e-10 Score=78.68 Aligned_cols=110 Identities=12% Similarity=0.069 Sum_probs=63.9
Q ss_pred cccchHHHHHHHHHHhc--cCCccEEEEEeCCCCcHHHHHHHHHhHHhhhhcccceEEEEecCCcCHHHHHHHHHHHhCC
Q 035585 27 AFKSRLSTLKSIQDALT--DVNVNIVGVYGMGGIGKTTLVKEFARQASEEKLFDQVVFSEVSQTPDIKKIHGEIAEKLGL 104 (183)
Q Consensus 27 ~~~gR~~~l~~l~~~l~--~~~~~~v~i~G~~G~GKTtL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~ 104 (183)
.++|+...+..+.+.+. ......++|+|++|+|||++|+.+++..... ....+ +++.......
T Consensus 2 ~iiG~s~~~~~~~~~~~~~a~~~~~vll~G~~GtGKt~lA~~i~~~~~~~--~~~~v-~~~~~~~~~~------------ 66 (145)
T 3n70_A 2 ELIGRSEWINQYRRRLQQLSETDIAVWLYGAPGTGRMTGARYLHQFGRNA--QGEFV-YRELTPDNAP------------ 66 (145)
T ss_dssp --CCSSHHHHHHHHHHHHHTTCCSCEEEESSTTSSHHHHHHHHHHSSTTT--TSCCE-EEECCTTTSS------------
T ss_pred CceeCCHHHHHHHHHHHHHhCCCCCEEEECCCCCCHHHHHHHHHHhCCcc--CCCEE-EECCCCCcch------------
Confidence 57888888888888765 3344678999999999999999998765432 11233 6665432220
Q ss_pred CchhHHHHHHHHHHHHHHhcCCeEEEEEeCCCCcc--cccccCcCCCCCCCCcEEEEEecC
Q 035585 105 EFSEEAESRRASRLYERLKKEKMILVILDNIWKYL--DLETVGIPFGDDHRGCKLLLTARD 163 (183)
Q Consensus 105 ~~~~~~~~~~~~~~~~~~~~~~~~llvlD~~~~~~--~~~~l~~~~~~~~~~~~iiitsr~ 163 (183)
. ........ ..-+|+|||++.+. ....+...+.......++|.||..
T Consensus 67 -----~----~~~~~~~a---~~g~l~ldei~~l~~~~q~~Ll~~l~~~~~~~~~I~~t~~ 115 (145)
T 3n70_A 67 -----Q----LNDFIALA---QGGTLVLSHPEHLTREQQYHLVQLQSQEHRPFRLIGIGDT 115 (145)
T ss_dssp -----C----HHHHHHHH---TTSCEEEECGGGSCHHHHHHHHHHHHSSSCSSCEEEEESS
T ss_pred -----h----hhcHHHHc---CCcEEEEcChHHCCHHHHHHHHHHHhhcCCCEEEEEECCc
Confidence 0 01111111 23478999998763 222333333333334566666653
No 25
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=98.96 E-value=1.2e-08 Score=77.21 Aligned_cols=125 Identities=18% Similarity=0.191 Sum_probs=69.9
Q ss_pred ccccchHHHHHHHHH-------Hhc---cCCccEEEEEeCCCCcHHHHHHHHHhHHhhhhcccceEEEEecCCcCHHHHH
Q 035585 26 EAFKSRLSTLKSIQD-------ALT---DVNVNIVGVYGMGGIGKTTLVKEFARQASEEKLFDQVVFSEVSQTPDIKKIH 95 (183)
Q Consensus 26 ~~~~gR~~~l~~l~~-------~l~---~~~~~~v~i~G~~G~GKTtL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 95 (183)
.+++++...++.+.. .+. ....+.++|+|++|+|||++|+.+++.... ..+.++++..
T Consensus 33 ~~~i~~~~~~~~i~~~~~~l~~~l~~~~~~~~~~vLl~G~~GtGKT~la~~ia~~~~~-----~~~~i~~~~~------- 100 (272)
T 1d2n_A 33 NGIIKWGDPVTRVLDDGELLVQQTKNSDRTPLVSVLLEGPPHSGKTALAAKIAEESNF-----PFIKICSPDK------- 100 (272)
T ss_dssp TCCCCCSHHHHHHHHHHHHHHHHHHHCSSCSEEEEEEECSTTSSHHHHHHHHHHHHTC-----SEEEEECGGG-------
T ss_pred cCCCCccHHHHHHHHHHHHHHHHHhccCCCCCeEEEEECCCCCcHHHHHHHHHHHhCC-----CEEEEeCHHH-------
Confidence 456777666655555 222 455678999999999999999999987432 2233343321
Q ss_pred HHHHHHhCCCchhHHHHHHHHHHHHHHhcCCeEEEEEeCCCCcc------------cccccCcCCCC---CCCCcEEEEE
Q 035585 96 GEIAEKLGLEFSEEAESRRASRLYERLKKEKMILVILDNIWKYL------------DLETVGIPFGD---DHRGCKLLLT 160 (183)
Q Consensus 96 ~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~llvlD~~~~~~------------~~~~l~~~~~~---~~~~~~iiit 160 (183)
+.. ............++......+..+|+|||++.+. .+..+...+.. ......+|.|
T Consensus 101 ------~~g-~~~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~l~~L~~~~~~~~~~~~~~~ii~t 173 (272)
T 1d2n_A 101 ------MIG-FSETAKCQAMKKIFDDAYKSQLSCVVVDDIERLLDYVPIGPRFSNLVLQALLVLLKKAPPQGRKLLIIGT 173 (272)
T ss_dssp ------CTT-CCHHHHHHHHHHHHHHHHTSSEEEEEECCHHHHTTCBTTTTBCCHHHHHHHHHHTTCCCSTTCEEEEEEE
T ss_pred ------hcC-CchHHHHHHHHHHHHHHHhcCCcEEEEEChhhhhccCCCChhHHHHHHHHHHHHhcCccCCCCCEEEEEe
Confidence 111 1111111223344444444678999999987541 01222222221 2334557778
Q ss_pred ecChHHHhh
Q 035585 161 ARDCNVLLN 169 (183)
Q Consensus 161 sr~~~~~~~ 169 (183)
|...+.+..
T Consensus 174 tn~~~~l~~ 182 (272)
T 1d2n_A 174 TSRKDVLQE 182 (272)
T ss_dssp ESCHHHHHH
T ss_pred cCChhhcch
Confidence 877766554
No 26
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=98.96 E-value=1.1e-09 Score=84.84 Aligned_cols=129 Identities=11% Similarity=0.083 Sum_probs=80.3
Q ss_pred chhhhhhcCCCcccccchHHHHHHHHHHhccCC-ccEEEEEeCCCCcHHHHHHHHHhHHhhhhcccceEEEEecCCcCHH
Q 035585 14 AEEVWLKSNKGYEAFKSRLSTLKSIQDALTDVN-VNIVGVYGMGGIGKTTLVKEFARQASEEKLFDQVVFSEVSQTPDIK 92 (183)
Q Consensus 14 ~~~~~~~~~~~~~~~~gR~~~l~~l~~~l~~~~-~~~v~i~G~~G~GKTtL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 92 (183)
.++.....|.....++|++..+..+.+++...+ ++.++++|++|+|||++++.+++.+.. .+++++++... .
T Consensus 14 ~~~~~k~rP~~~~~ivg~~~~~~~l~~~l~~~~~~~~~L~~G~~G~GKT~la~~la~~l~~-----~~~~i~~~~~~-~- 86 (324)
T 3u61_B 14 HILEQKYRPSTIDECILPAFDKETFKSITSKGKIPHIILHSPSPGTGKTTVAKALCHDVNA-----DMMFVNGSDCK-I- 86 (324)
T ss_dssp SSHHHHSCCCSTTTSCCCHHHHHHHHHHHHTTCCCSEEEECSSTTSSHHHHHHHHHHHTTE-----EEEEEETTTCC-H-
T ss_pred chHHHhhCCCCHHHHhCcHHHHHHHHHHHHcCCCCeEEEeeCcCCCCHHHHHHHHHHHhCC-----CEEEEcccccC-H-
Confidence 345555567778889999999999999988544 356777888999999999999887632 24555544321 1
Q ss_pred HHHHHHHHHhCCCchhHHHHHHHHHHHHHH-hcCCeEEEEEeCCCCcc---cccccCcCCCCCCCCcEEEEEecChH
Q 035585 93 KIHGEIAEKLGLEFSEEAESRRASRLYERL-KKEKMILVILDNIWKYL---DLETVGIPFGDDHRGCKLLLTARDCN 165 (183)
Q Consensus 93 ~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~-~~~~~~llvlD~~~~~~---~~~~l~~~~~~~~~~~~iiitsr~~~ 165 (183)
.....++. ...... ..++..+|+|||++.+. ..+.+...+......+.+|+|+....
T Consensus 87 ~~i~~~~~----------------~~~~~~~~~~~~~vliiDEi~~l~~~~~~~~L~~~le~~~~~~~iI~~~n~~~ 147 (324)
T 3u61_B 87 DFVRGPLT----------------NFASAASFDGRQKVIVIDEFDRSGLAESQRHLRSFMEAYSSNCSIIITANNID 147 (324)
T ss_dssp HHHHTHHH----------------HHHHBCCCSSCEEEEEEESCCCGGGHHHHHHHHHHHHHHGGGCEEEEEESSGG
T ss_pred HHHHHHHH----------------HHHhhcccCCCCeEEEEECCcccCcHHHHHHHHHHHHhCCCCcEEEEEeCCcc
Confidence 11111111 111111 01478999999999775 23333333333334567888877644
No 27
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.94 E-value=1.5e-09 Score=84.95 Aligned_cols=53 Identities=15% Similarity=0.149 Sum_probs=43.7
Q ss_pred hhcCCCcccccchHHHHHHHHHHh-ccCCccEEEEEeCCCCcHHHHHHHHHhHH
Q 035585 19 LKSNKGYEAFKSRLSTLKSIQDAL-TDVNVNIVGVYGMGGIGKTTLVKEFARQA 71 (183)
Q Consensus 19 ~~~~~~~~~~~gR~~~l~~l~~~l-~~~~~~~v~i~G~~G~GKTtL~~~~~~~~ 71 (183)
...|.....++|++..++.+.+++ ...+.+.++|+|++|+||||+++.++..+
T Consensus 7 kyrP~~~~~~vg~~~~~~~l~~~~~~~~~~~~~ll~Gp~G~GKTtl~~~la~~l 60 (354)
T 1sxj_E 7 KYRPKSLNALSHNEELTNFLKSLSDQPRDLPHLLLYGPNGTGKKTRCMALLESI 60 (354)
T ss_dssp TTCCCSGGGCCSCHHHHHHHHTTTTCTTCCCCEEEECSTTSSHHHHHHTHHHHH
T ss_pred ccCCCCHHHhcCCHHHHHHHHHHHhhCCCCCeEEEECCCCCCHHHHHHHHHHHH
Confidence 345566678999999999999988 65544449999999999999999999865
No 28
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=98.94 E-value=7.5e-09 Score=77.50 Aligned_cols=95 Identities=15% Similarity=0.172 Sum_probs=56.8
Q ss_pred CcccccchHHHHHHHHHHhc---c---------CCccEEEEEeCCCCcHHHHHHHHHhHHhhhhcccceEEEEecCCcCH
Q 035585 24 GYEAFKSRLSTLKSIQDALT---D---------VNVNIVGVYGMGGIGKTTLVKEFARQASEEKLFDQVVFSEVSQTPDI 91 (183)
Q Consensus 24 ~~~~~~gR~~~l~~l~~~l~---~---------~~~~~v~i~G~~G~GKTtL~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 91 (183)
....++|.+.....+.+.+. . ...+.++|+|++|+|||++|+.++..... ..+++++..-...
T Consensus 4 ~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~vll~G~~GtGKT~la~~la~~~~~-----~~~~~~~~~~~~~ 78 (262)
T 2qz4_A 4 SFKDVAGMHEAKLEVREFVDYLKSPERFLQLGAKVPKGALLLGPPGCGKTLLAKAVATEAQV-----PFLAMAGAEFVEV 78 (262)
T ss_dssp CTTSSCSCHHHHHHHHHHHHHHHCCC------CCCCCEEEEESCTTSSHHHHHHHHHHHHTC-----CEEEEETTTTSSS
T ss_pred CHHHhCCHHHHHHHHHHHHHHHHCHHHHHHcCCCCCceEEEECCCCCCHHHHHHHHHHHhCC-----CEEEechHHHHhh
Confidence 44567788777777766542 1 34467899999999999999999987542 2344444432110
Q ss_pred HHHHHHHHHHhCCCchhHHHHHHHHHHHHHHhcCCeEEEEEeCCCCc
Q 035585 92 KKIHGEIAEKLGLEFSEEAESRRASRLYERLKKEKMILVILDNIWKY 138 (183)
Q Consensus 92 ~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~llvlD~~~~~ 138 (183)
... ........++.......+.+|+|||++.+
T Consensus 79 --------------~~~-~~~~~~~~~~~~a~~~~~~vl~iDeid~l 110 (262)
T 2qz4_A 79 --------------IGG-LGAARVRSLFKEARARAPCIVYIDEIDAV 110 (262)
T ss_dssp --------------STT-HHHHHHHHHHHHHHHTCSEEEEEECC---
T ss_pred --------------ccC-hhHHHHHHHHHHHHhcCCeEEEEeCcchh
Confidence 001 11122334444444466889999999875
No 29
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.91 E-value=2.8e-09 Score=83.18 Aligned_cols=133 Identities=13% Similarity=0.117 Sum_probs=79.1
Q ss_pred hhhhhhcCCCcccccchHHHHHHHHHHhccCCccEEEEEeCCCCcHHHHHHHHHhHHhhhhcccceEEEEecCCcCHHHH
Q 035585 15 EEVWLKSNKGYEAFKSRLSTLKSIQDALTDVNVNIVGVYGMGGIGKTTLVKEFARQASEEKLFDQVVFSEVSQTPDIKKI 94 (183)
Q Consensus 15 ~~~~~~~~~~~~~~~gR~~~l~~l~~~l~~~~~~~v~i~G~~G~GKTtL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 94 (183)
++.....|.....++|.+..++.|...+...+.+.++++|++|+||||+++.++..+........+..++.+.......+
T Consensus 14 ~~~~k~rp~~~~~~~g~~~~~~~L~~~i~~g~~~~~ll~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~~~~~~~~~~i 93 (340)
T 1sxj_C 14 PWVEKYRPETLDEVYGQNEVITTVRKFVDEGKLPHLLFYGPPGTGKTSTIVALAREIYGKNYSNMVLELNASDDRGIDVV 93 (340)
T ss_dssp CHHHHTCCSSGGGCCSCHHHHHHHHHHHHTTCCCCEEEECSSSSSHHHHHHHHHHHHHTTSHHHHEEEECTTSCCSHHHH
T ss_pred chHHHhCCCcHHHhcCcHHHHHHHHHHHhcCCCceEEEECCCCCCHHHHHHHHHHHHcCCCccceEEEEcCcccccHHHH
Confidence 34445567777888999999999999888665555999999999999999999998754321112333343332222111
Q ss_pred HHHHHHHhCCCchhHHHHHHHHHHHHHH--hcCCeEEEEEeCCCCcc--cccccCcCCCCCCCCcEEEEEecCh
Q 035585 95 HGEIAEKLGLEFSEEAESRRASRLYERL--KKEKMILVILDNIWKYL--DLETVGIPFGDDHRGCKLLLTARDC 164 (183)
Q Consensus 95 ~~~i~~~l~~~~~~~~~~~~~~~~~~~~--~~~~~~llvlD~~~~~~--~~~~l~~~~~~~~~~~~iiitsr~~ 164 (183)
. ... ..+.+.. ...+..++|+||++.+. ..+.+...+......+.+|+++...
T Consensus 94 r-~~i----------------~~~~~~~~~~~~~~~viiiDe~~~l~~~~~~~L~~~le~~~~~~~~il~~n~~ 150 (340)
T 1sxj_C 94 R-NQI----------------KDFASTRQIFSKGFKLIILDEADAMTNAAQNALRRVIERYTKNTRFCVLANYA 150 (340)
T ss_dssp H-THH----------------HHHHHBCCSSSCSCEEEEETTGGGSCHHHHHHHHHHHHHTTTTEEEEEEESCG
T ss_pred H-HHH----------------HHHHhhcccCCCCceEEEEeCCCCCCHHHHHHHHHHHhcCCCCeEEEEEecCc
Confidence 1 111 0111000 01347899999998653 2333333333334456677776543
No 30
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=98.91 E-value=6.2e-09 Score=80.73 Aligned_cols=99 Identities=18% Similarity=0.288 Sum_probs=64.4
Q ss_pred hcCCCcccccchHHHHHHHHHHhc------------cCCccEEEEEeCCCCcHHHHHHHHHhHHhhhhcccceEEEEecC
Q 035585 20 KSNKGYEAFKSRLSTLKSIQDALT------------DVNVNIVGVYGMGGIGKTTLVKEFARQASEEKLFDQVVFSEVSQ 87 (183)
Q Consensus 20 ~~~~~~~~~~gR~~~l~~l~~~l~------------~~~~~~v~i~G~~G~GKTtL~~~~~~~~~~~~~~~~~~~~~~~~ 87 (183)
.|......++|.+...+.|.+++. ....+.++|+|++|+|||+||+.+++..... .+.++++.
T Consensus 12 ~~~~~~~di~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~aia~~~~~~-----~~~v~~~~ 86 (322)
T 3eie_A 12 KPNVKWEDVAGLEGAKEALKEAVILPVKFPHLFKGNRKPTSGILLYGPPGTGKSYLAKAVATEANST-----FFSVSSSD 86 (322)
T ss_dssp CCCCCGGGSCSCHHHHHHHHHHTHHHHHCGGGCCTTCCCCCEEEEECSSSSCHHHHHHHHHHHHTCE-----EEEEEHHH
T ss_pred CCCCCHHHhcChHHHHHHHHHHHHHHHhCHHHHhcCCCCCCeEEEECCCCCcHHHHHHHHHHHHCCC-----EEEEchHH
Confidence 344556678999999999988762 2234679999999999999999998875432 23333321
Q ss_pred CcCHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHHhcCCeEEEEEeCCCCc
Q 035585 88 TPDIKKIHGEIAEKLGLEFSEEAESRRASRLYERLKKEKMILVILDNIWKY 138 (183)
Q Consensus 88 ~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~llvlD~~~~~ 138 (183)
+... ... ........++......++.+|+|||++.+
T Consensus 87 ----------l~~~----~~g-~~~~~~~~~f~~a~~~~~~vl~iDEid~l 122 (322)
T 3eie_A 87 ----------LVSK----WMG-ESEKLVKQLFAMARENKPSIIFIDQVDAL 122 (322)
T ss_dssp ----------HHTT----TGG-GHHHHHHHHHHHHHHTSSEEEEEECGGGG
T ss_pred ----------Hhhc----ccc-hHHHHHHHHHHHHHhcCCeEEEechhhhh
Confidence 1110 111 12233445555555577889999999865
No 31
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=98.90 E-value=4.7e-09 Score=80.59 Aligned_cols=48 Identities=17% Similarity=0.154 Sum_probs=38.3
Q ss_pred cccchHHHHHHHHHHhc---------------cCCccEEEEEeCCCCcHHHHHHHHHhHHhhh
Q 035585 27 AFKSRLSTLKSIQDALT---------------DVNVNIVGVYGMGGIGKTTLVKEFARQASEE 74 (183)
Q Consensus 27 ~~~gR~~~l~~l~~~l~---------------~~~~~~v~i~G~~G~GKTtL~~~~~~~~~~~ 74 (183)
.++|.+...+.+.+.+. ......++|+|++|+|||++|+.+++.+...
T Consensus 32 ~i~G~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~vll~G~~GtGKT~la~~la~~l~~~ 94 (309)
T 3syl_A 32 ELIGLKPVKDRIRETAALLLVERARQKLGLAHETPTLHMSFTGNPGTGKTTVALKMAGLLHRL 94 (309)
T ss_dssp HSSSCHHHHHHHHHHHHHHHHHHHHHHHTCCSSCCCCEEEEEECTTSSHHHHHHHHHHHHHHT
T ss_pred HccChHHHHHHHHHHHHHHHhHHHHHHcCCCCCCCCceEEEECCCCCCHHHHHHHHHHHHHhc
Confidence 57888888888876543 2344579999999999999999999888654
No 32
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=98.89 E-value=2.5e-09 Score=76.01 Aligned_cols=117 Identities=15% Similarity=0.114 Sum_probs=63.0
Q ss_pred hHHHHHHHHHHhcc---CCccEEEEEeCCCCcHHHHHHHHHhHHhhhhcccceEEEEecCCcCHHHHHHHHHHHhCCCch
Q 035585 31 RLSTLKSIQDALTD---VNVNIVGVYGMGGIGKTTLVKEFARQASEEKLFDQVVFSEVSQTPDIKKIHGEIAEKLGLEFS 107 (183)
Q Consensus 31 R~~~l~~l~~~l~~---~~~~~v~i~G~~G~GKTtL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~ 107 (183)
++..++.+.++..+ .+...++|+|++|+|||||++.++..+.... ...++|++. .++...+...+.....
T Consensus 19 ~~~~~~~~~~~~~~~~~~~g~~~~l~G~~G~GKTtL~~~i~~~~~~~~-g~~~~~~~~------~~~~~~~~~~~~~~~~ 91 (180)
T 3ec2_A 19 QNRALLTIRVFVHNFNPEEGKGLTFVGSPGVGKTHLAVATLKAIYEKK-GIRGYFFDT------KDLIFRLKHLMDEGKD 91 (180)
T ss_dssp HHHHHHHHHHHHHSCCGGGCCEEEECCSSSSSHHHHHHHHHHHHHHHS-CCCCCEEEH------HHHHHHHHHHHHHTCC
T ss_pred HHHHHHHHHHHHHhccccCCCEEEEECCCCCCHHHHHHHHHHHHHHHc-CCeEEEEEH------HHHHHHHHHHhcCchH
Confidence 45555556555542 3457899999999999999999999886431 112344332 2333333222211100
Q ss_pred hHHHHHHHHHHHHHHhcCCeEEEEEeCCCC--cccc--cccCcCCCC-CCCCcEEEEEecCh
Q 035585 108 EEAESRRASRLYERLKKEKMILVILDNIWK--YLDL--ETVGIPFGD-DHRGCKLLLTARDC 164 (183)
Q Consensus 108 ~~~~~~~~~~~~~~~~~~~~~llvlD~~~~--~~~~--~~l~~~~~~-~~~~~~iiitsr~~ 164 (183)
..+...+ .+.-+|||||++. .+.+ ..+...+.. ...+..+|+||+..
T Consensus 92 --------~~~~~~~--~~~~llilDE~~~~~~~~~~~~~l~~ll~~~~~~~~~ii~tsn~~ 143 (180)
T 3ec2_A 92 --------TKFLKTV--LNSPVLVLDDLGSERLSDWQRELISYIITYRYNNLKSTIITTNYS 143 (180)
T ss_dssp --------SHHHHHH--HTCSEEEEETCSSSCCCHHHHHHHHHHHHHHHHTTCEEEEECCCC
T ss_pred --------HHHHHHh--cCCCEEEEeCCCCCcCCHHHHHHHHHHHHHHHHcCCCEEEEcCCC
Confidence 0222223 2567999999973 2221 112121211 12456788888743
No 33
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=98.86 E-value=9.8e-09 Score=81.63 Aligned_cols=98 Identities=12% Similarity=0.203 Sum_probs=62.4
Q ss_pred cCCCcccccchHHHHHHHHHHhc------------cCCccEEEEEeCCCCcHHHHHHHHHhHHhhhhcccceEEEEecCC
Q 035585 21 SNKGYEAFKSRLSTLKSIQDALT------------DVNVNIVGVYGMGGIGKTTLVKEFARQASEEKLFDQVVFSEVSQT 88 (183)
Q Consensus 21 ~~~~~~~~~gR~~~l~~l~~~l~------------~~~~~~v~i~G~~G~GKTtL~~~~~~~~~~~~~~~~~~~~~~~~~ 88 (183)
++.....++|++..++.|.+++. ....+.++|+|++|+|||+||+.++..... ..+.+++...
T Consensus 110 ~~~~~~~iiG~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vLL~GppGtGKT~la~aia~~~~~-----~~~~v~~~~l 184 (389)
T 3vfd_A 110 TAVKFDDIAGQDLAKQALQEIVILPSLRPELFTGLRAPARGLLLFGPPGNGKTMLAKAVAAESNA-----TFFNISAASL 184 (389)
T ss_dssp CCCCGGGSCSCHHHHHHHHHHTHHHHHCTTTSCGGGCCCSEEEEESSTTSCHHHHHHHHHHHTTC-----EEEEECSCCC
T ss_pred CCCChHHhCCHHHHHHHHHHHHHHhccCHHHhcccCCCCceEEEECCCCCCHHHHHHHHHHhhcC-----cEEEeeHHHh
Confidence 44556788999999999998773 223578999999999999999999876432 2334444332
Q ss_pred cCHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHHhcCCeEEEEEeCCCCc
Q 035585 89 PDIKKIHGEIAEKLGLEFSEEAESRRASRLYERLKKEKMILVILDNIWKY 138 (183)
Q Consensus 89 ~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~llvlD~~~~~ 138 (183)
.... .+ ........++.......+.+|+|||++.+
T Consensus 185 ~~~~---------~g------~~~~~~~~~~~~a~~~~~~il~iDEid~l 219 (389)
T 3vfd_A 185 TSKY---------VG------EGEKLVRALFAVARELQPSIIFIDQVDSL 219 (389)
T ss_dssp ----------------------CHHHHHHHHHHHHHSSSEEEEEETGGGG
T ss_pred hccc---------cc------hHHHHHHHHHHHHHhcCCeEEEEECchhh
Confidence 1110 00 00122334444444466789999999865
No 34
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=98.86 E-value=1.5e-08 Score=79.69 Aligned_cols=98 Identities=14% Similarity=0.170 Sum_probs=63.5
Q ss_pred cCCCcccccchHHHHHHHHHHhc------------cCCccEEEEEeCCCCcHHHHHHHHHhHHhhhhcccceEEEEecCC
Q 035585 21 SNKGYEAFKSRLSTLKSIQDALT------------DVNVNIVGVYGMGGIGKTTLVKEFARQASEEKLFDQVVFSEVSQT 88 (183)
Q Consensus 21 ~~~~~~~~~gR~~~l~~l~~~l~------------~~~~~~v~i~G~~G~GKTtL~~~~~~~~~~~~~~~~~~~~~~~~~ 88 (183)
++.....++|.+..++.|.+.+. ......++|+|++|+|||+||+.++..... ..++++++..
T Consensus 79 ~~~~~~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~aia~~~~~-----~~~~i~~~~l 153 (357)
T 3d8b_A 79 PPVNWEDIAGVEFAKATIKEIVVWPMLRPDIFTGLRGPPKGILLFGPPGTGKTLIGKCIASQSGA-----TFFSISASSL 153 (357)
T ss_dssp CCCCGGGSCSCHHHHHHHHHHTHHHHHCTTTSCGGGSCCSEEEEESSTTSSHHHHHHHHHHHTTC-----EEEEEEGGGG
T ss_pred CCCCHHHhCChHHHHHHHHHHHHHHhhChHhHhhccCCCceEEEECCCCCCHHHHHHHHHHHcCC-----eEEEEehHHh
Confidence 44455678999999999988763 234678999999999999999999886532 2344554422
Q ss_pred cCHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHHhcCCeEEEEEeCCCCc
Q 035585 89 PDIKKIHGEIAEKLGLEFSEEAESRRASRLYERLKKEKMILVILDNIWKY 138 (183)
Q Consensus 89 ~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~llvlD~~~~~ 138 (183)
.. .... ........++......++.+|+|||++.+
T Consensus 154 ~~--------------~~~g-~~~~~~~~~~~~a~~~~~~vl~iDEid~l 188 (357)
T 3d8b_A 154 TS--------------KWVG-EGEKMVRALFAVARCQQPAVIFIDEIDSL 188 (357)
T ss_dssp CC--------------SSTT-HHHHHHHHHHHHHHHTCSEEEEEETHHHH
T ss_pred hc--------------cccc-hHHHHHHHHHHHHHhcCCeEEEEeCchhh
Confidence 11 0111 11222334444444467889999999754
No 35
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=98.82 E-value=1.4e-08 Score=88.25 Aligned_cols=105 Identities=12% Similarity=0.209 Sum_probs=64.3
Q ss_pred CCCcccccchHHHHHHHHHHhccCCccEEEEEeCCCCcHHHHHHHHHhHHhhhhc-----ccceEEEEecCCcCHHHHHH
Q 035585 22 NKGYEAFKSRLSTLKSIQDALTDVNVNIVGVYGMGGIGKTTLVKEFARQASEEKL-----FDQVVFSEVSQTPDIKKIHG 96 (183)
Q Consensus 22 ~~~~~~~~gR~~~l~~l~~~l~~~~~~~v~i~G~~G~GKTtL~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~ 96 (183)
+.....++||+.++..+...+.+...+.++|+|++|+|||++++.++..+..... ...+++++++.-..-
T Consensus 166 ~~~ld~viGr~~~i~~l~~~l~~~~~~~vlL~G~pG~GKT~la~~la~~l~~~~~p~~l~~~~~~~l~~~~l~~g----- 240 (854)
T 1qvr_A 166 EGKLDPVIGRDEEIRRVIQILLRRTKNNPVLIGEPGVGKTAIVEGLAQRIVKGDVPEGLKGKRIVSLQMGSLLAG----- 240 (854)
T ss_dssp TTCSCCCCSCHHHHHHHHHHHHCSSCCCCEEEECTTSCHHHHHHHHHHHHHHTCSCTTSTTCEEEEECC-----------
T ss_pred cCCCcccCCcHHHHHHHHHHHhcCCCCceEEEcCCCCCHHHHHHHHHHHHhcCCCchhhcCCeEEEeehHHhhcc-----
Confidence 4455678999999999999998766678899999999999999999998754211 112444443221100
Q ss_pred HHHHHhCCCchhHHHHHHHHHHHHHHhc-CCeEEEEEeCCCCcc
Q 035585 97 EIAEKLGLEFSEEAESRRASRLYERLKK-EKMILVILDNIWKYL 139 (183)
Q Consensus 97 ~i~~~l~~~~~~~~~~~~~~~~~~~~~~-~~~~llvlD~~~~~~ 139 (183)
..... .....+..++..+.. .++.+|+|||++.+.
T Consensus 241 -------~~~~g-~~~~~l~~~~~~~~~~~~~~iL~IDEi~~l~ 276 (854)
T 1qvr_A 241 -------AKYRG-EFEERLKAVIQEVVQSQGEVILFIDELHTVV 276 (854)
T ss_dssp -------------CHHHHHHHHHHHHHTTCSSEEEEECCC----
T ss_pred -------Cccch-HHHHHHHHHHHHHHhcCCCeEEEEecHHHHh
Confidence 00000 112233444444543 468999999998763
No 36
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=98.79 E-value=4.5e-08 Score=75.96 Aligned_cols=98 Identities=16% Similarity=0.231 Sum_probs=60.8
Q ss_pred CCCcccccchHHHHHHHHHHhc------------cCCccEEEEEeCCCCcHHHHHHHHHhHHhhhhcccceEEEEecCCc
Q 035585 22 NKGYEAFKSRLSTLKSIQDALT------------DVNVNIVGVYGMGGIGKTTLVKEFARQASEEKLFDQVVFSEVSQTP 89 (183)
Q Consensus 22 ~~~~~~~~gR~~~l~~l~~~l~------------~~~~~~v~i~G~~G~GKTtL~~~~~~~~~~~~~~~~~~~~~~~~~~ 89 (183)
.....++.|.+...+.|.+.+. ..+.+.++|+|++|+|||+||+.+++..... ..+.++++.-.
T Consensus 8 ~~~~~di~G~~~~k~~l~~~v~~p~~~~~~~~~~~~~~~~iLL~GppGtGKT~la~ala~~~~~~----~~~~i~~~~l~ 83 (322)
T 1xwi_A 8 NVKWSDVAGLEGAKEALKEAVILPIKFPHLFTGKRTPWRGILLFGPPGTGKSYLAKAVATEANNS----TFFSISSSDLV 83 (322)
T ss_dssp CCCGGGSCSCHHHHHHHHHHHHHHHHCGGGSCTTCCCCSEEEEESSSSSCHHHHHHHHHHHTTSC----EEEEEECCSSC
T ss_pred CCCHHHhcCHHHHHHHHHHHHHHHHhCHHHHhCCCCCCceEEEECCCCccHHHHHHHHHHHcCCC----cEEEEEhHHHH
Confidence 3445567788888777776552 1234789999999999999999999876221 23344443221
Q ss_pred CHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHHhcCCeEEEEEeCCCCc
Q 035585 90 DIKKIHGEIAEKLGLEFSEEAESRRASRLYERLKKEKMILVILDNIWKY 138 (183)
Q Consensus 90 ~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~llvlD~~~~~ 138 (183)
.. .... .......++......++.+|+|||++.+
T Consensus 84 ~~--------------~~g~-~~~~~~~lf~~a~~~~~~vl~iDEid~l 117 (322)
T 1xwi_A 84 SK--------------WLGE-SEKLVKNLFQLARENKPSIIFIDEIDSL 117 (322)
T ss_dssp CS--------------SCCS-CHHHHHHHHHHHHHTSSEEEEEETTTGG
T ss_pred hh--------------hhhH-HHHHHHHHHHHHHhcCCcEEEeecHHHh
Confidence 10 0000 1122334444444567889999999866
No 37
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=98.78 E-value=1.5e-08 Score=81.95 Aligned_cols=125 Identities=13% Similarity=0.256 Sum_probs=68.6
Q ss_pred Cccccc-chHH--HHHHHHHHhccCC-ccEEEEEeCCCCcHHHHHHHHHhHHhhhhcccceEEEEecCCcCHHHHHHHHH
Q 035585 24 GYEAFK-SRLS--TLKSIQDALTDVN-VNIVGVYGMGGIGKTTLVKEFARQASEEKLFDQVVFSEVSQTPDIKKIHGEIA 99 (183)
Q Consensus 24 ~~~~~~-gR~~--~l~~l~~~l~~~~-~~~v~i~G~~G~GKTtL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 99 (183)
....|+ |... ....+.....+.. ...++|+|++|+|||||++.+++..........++++++.. +...+.
T Consensus 103 tfd~fv~g~~n~~a~~~~~~~a~~~~~~~~lll~Gp~G~GKTtLa~aia~~l~~~~~~~~v~~v~~~~------~~~~~~ 176 (440)
T 2z4s_A 103 TFENFVVGPGNSFAYHAALEVAKHPGRYNPLFIYGGVGLGKTHLLQSIGNYVVQNEPDLRVMYITSEK------FLNDLV 176 (440)
T ss_dssp SGGGCCCCTTTHHHHHHHHHHHHSTTSSCCEEEECSSSSSHHHHHHHHHHHHHHHCCSSCEEEEEHHH------HHHHHH
T ss_pred ChhhcCCCCchHHHHHHHHHHHhCCCCCCeEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEeeHHH------HHHHHH
Confidence 344566 4332 3334444443332 67899999999999999999999886542223356655433 222333
Q ss_pred HHhCCCchhHHHHHHHHHHHHHHhcCCeEEEEEeCCCCccc----ccccCcCCCC-CCCCcEEEEEecC
Q 035585 100 EKLGLEFSEEAESRRASRLYERLKKEKMILVILDNIWKYLD----LETVGIPFGD-DHRGCKLLLTARD 163 (183)
Q Consensus 100 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~llvlD~~~~~~~----~~~l~~~~~~-~~~~~~iiitsr~ 163 (183)
..+.... ...+...+. .+.-+|+|||++.... .+.+...+.. ...+..+|+||+.
T Consensus 177 ~~~~~~~--------~~~~~~~~~-~~~~vL~IDEi~~l~~~~~~q~~l~~~l~~l~~~~~~iIitt~~ 236 (440)
T 2z4s_A 177 DSMKEGK--------LNEFREKYR-KKVDILLIDDVQFLIGKTGVQTELFHTFNELHDSGKQIVICSDR 236 (440)
T ss_dssp HHHHTTC--------HHHHHHHHT-TTCSEEEEECGGGGSSCHHHHHHHHHHHHHHHTTTCEEEEEESS
T ss_pred HHHHccc--------HHHHHHHhc-CCCCEEEEeCcccccCChHHHHHHHHHHHHHHHCCCeEEEEECC
Confidence 3222110 112222221 2678999999986532 2222222211 2346678888875
No 38
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=98.77 E-value=5.1e-08 Score=74.46 Aligned_cols=98 Identities=11% Similarity=0.193 Sum_probs=63.4
Q ss_pred cCCCcccccchHHHHHHHHHHhcc------------CCccEEEEEeCCCCcHHHHHHHHHhHHhhhhcccceEEEEecCC
Q 035585 21 SNKGYEAFKSRLSTLKSIQDALTD------------VNVNIVGVYGMGGIGKTTLVKEFARQASEEKLFDQVVFSEVSQT 88 (183)
Q Consensus 21 ~~~~~~~~~gR~~~l~~l~~~l~~------------~~~~~v~i~G~~G~GKTtL~~~~~~~~~~~~~~~~~~~~~~~~~ 88 (183)
++.....++|.+..++.+.+.+.. ...+.++|+|++|+|||++|+.++..... ..+.++++..
T Consensus 16 ~~~~~~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKT~la~~la~~~~~-----~~~~i~~~~l 90 (297)
T 3b9p_A 16 AKVEWTDIAGQDVAKQALQEMVILPSVRPELFTGLRAPAKGLLLFGPPGNGKTLLARAVATECSA-----TFLNISAASL 90 (297)
T ss_dssp SCCCGGGSCCCHHHHHHHHHHTHHHHHCGGGSCGGGCCCSEEEEESSSSSCHHHHHHHHHHHTTC-----EEEEEESTTT
T ss_pred CCCCHHHhCChHHHHHHHHHHHHhhhhCHHHHhcCCCCCCeEEEECcCCCCHHHHHHHHHHHhCC-----CeEEeeHHHH
Confidence 445567789999999999887631 24578999999999999999999887532 2334444322
Q ss_pred cCHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHHhcCCeEEEEEeCCCCc
Q 035585 89 PDIKKIHGEIAEKLGLEFSEEAESRRASRLYERLKKEKMILVILDNIWKY 138 (183)
Q Consensus 89 ~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~llvlD~~~~~ 138 (183)
.. .... ........++......++.+|+|||++.+
T Consensus 91 ~~--------------~~~~-~~~~~~~~~~~~~~~~~~~vl~iDEid~l 125 (297)
T 3b9p_A 91 TS--------------KYVG-DGEKLVRALFAVARHMQPSIIFIDEVDSL 125 (297)
T ss_dssp SS--------------SSCS-CHHHHHHHHHHHHHHTCSEEEEEETGGGT
T ss_pred hh--------------cccc-hHHHHHHHHHHHHHHcCCcEEEeccHHHh
Confidence 11 0000 01222333444444467889999999865
No 39
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.77 E-value=1.1e-08 Score=84.37 Aligned_cols=71 Identities=15% Similarity=0.140 Sum_probs=53.9
Q ss_pred hhhhhhcCCCcccccchHHHHHHHHHHhcc-----------------CCccEEEEEeCCCCcHHHHHHHHHhHHhhhhcc
Q 035585 15 EEVWLKSNKGYEAFKSRLSTLKSIQDALTD-----------------VNVNIVGVYGMGGIGKTTLVKEFARQASEEKLF 77 (183)
Q Consensus 15 ~~~~~~~~~~~~~~~gR~~~l~~l~~~l~~-----------------~~~~~v~i~G~~G~GKTtL~~~~~~~~~~~~~~ 77 (183)
.+.....|.....++|++..++.+.+++.. ...+.++|+|++|+|||++|+.+++.+..
T Consensus 28 lW~ekyrP~~~~dliG~~~~~~~L~~~l~~~~~~~~~~~~~~g~~~~~~~~~lLL~GppGtGKTtla~~la~~l~~---- 103 (516)
T 1sxj_A 28 LWTVKYAPTNLQQVCGNKGSVMKLKNWLANWENSKKNSFKHAGKDGSGVFRAAMLYGPPGIGKTTAAHLVAQELGY---- 103 (516)
T ss_dssp CHHHHTCCSSGGGCCSCHHHHHHHHHHHHTHHHHHHTTTCCCCTTSTTSCSEEEEECSTTSSHHHHHHHHHHHTTC----
T ss_pred CcccccCCCCHHHhcCCHHHHHHHHHHHHHhHhhchhhccccCccCCCCCcEEEEECCCCCCHHHHHHHHHHHcCC----
Confidence 345556677788899999999999998863 13578999999999999999999987621
Q ss_pred cceEEEEecCCcC
Q 035585 78 DQVVFSEVSQTPD 90 (183)
Q Consensus 78 ~~~~~~~~~~~~~ 90 (183)
.++.++++....
T Consensus 104 -~~i~in~s~~~~ 115 (516)
T 1sxj_A 104 -DILEQNASDVRS 115 (516)
T ss_dssp -EEEEECTTSCCC
T ss_pred -CEEEEeCCCcch
Confidence 244555555443
No 40
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=98.76 E-value=3.3e-08 Score=76.87 Aligned_cols=54 Identities=19% Similarity=0.265 Sum_probs=44.1
Q ss_pred hhcCCCcccccchHHHHHHHHHHhc-----cCCccEEEEEeCCCCcHHHHHHHHHhHHh
Q 035585 19 LKSNKGYEAFKSRLSTLKSIQDALT-----DVNVNIVGVYGMGGIGKTTLVKEFARQAS 72 (183)
Q Consensus 19 ~~~~~~~~~~~gR~~~l~~l~~~l~-----~~~~~~v~i~G~~G~GKTtL~~~~~~~~~ 72 (183)
...|.....++|++..+..+..++. ......++|+|++|+|||++|+.+++...
T Consensus 22 ~~~p~~~~~iiG~~~~~~~l~~~l~~~~~~~~~~~~vll~G~~GtGKT~la~~ia~~~~ 80 (338)
T 3pfi_A 22 SLRPSNFDGYIGQESIKKNLNVFIAAAKKRNECLDHILFSGPAGLGKTTLANIISYEMS 80 (338)
T ss_dssp -CCCCSGGGCCSCHHHHHHHHHHHHHHHHTTSCCCCEEEECSTTSSHHHHHHHHHHHTT
T ss_pred ccCCCCHHHhCChHHHHHHHHHHHHHHHhcCCCCCeEEEECcCCCCHHHHHHHHHHHhC
Confidence 3456677889999999999988876 24456799999999999999999977653
No 41
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=98.75 E-value=2.5e-08 Score=78.44 Aligned_cols=99 Identities=18% Similarity=0.265 Sum_probs=61.7
Q ss_pred hcCCCcccccchHHHHHHHHHHhc------------cCCccEEEEEeCCCCcHHHHHHHHHhHHhhhhcccceEEEEecC
Q 035585 20 KSNKGYEAFKSRLSTLKSIQDALT------------DVNVNIVGVYGMGGIGKTTLVKEFARQASEEKLFDQVVFSEVSQ 87 (183)
Q Consensus 20 ~~~~~~~~~~gR~~~l~~l~~~l~------------~~~~~~v~i~G~~G~GKTtL~~~~~~~~~~~~~~~~~~~~~~~~ 87 (183)
.|+.....++|.+...+.|.+.+. ....+.++|+|++|+|||+||+.+++..... .+.++++
T Consensus 45 ~~~~~~~di~G~~~~~~~l~~~v~~~~~~~~~~~~~~~~~~~iLL~GppGtGKT~la~ala~~~~~~-----~~~v~~~- 118 (355)
T 2qp9_X 45 KPNVKWEDVAGLEGAKEALKEAVILPVKFPHLFKGNRKPTSGILLYGPPGTGKSYLAKAVATEANST-----FFSVSSS- 118 (355)
T ss_dssp --CCCGGGSCCGGGHHHHHHHHTHHHHHCGGGGCSSCCCCCCEEEECSTTSCHHHHHHHHHHHHTCE-----EEEEEHH-
T ss_pred CCCCCHHHhCCHHHHHHHHHHHHHHHHhCHHHHhcCCCCCceEEEECCCCCcHHHHHHHHHHHhCCC-----EEEeeHH-
Confidence 345556678899999888887762 1234569999999999999999999886432 2333332
Q ss_pred CcCHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHHhcCCeEEEEEeCCCCc
Q 035585 88 TPDIKKIHGEIAEKLGLEFSEEAESRRASRLYERLKKEKMILVILDNIWKY 138 (183)
Q Consensus 88 ~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~llvlD~~~~~ 138 (183)
. +...+. . ........++.......+.+|+|||++.+
T Consensus 119 -----~----l~~~~~----g-~~~~~~~~~f~~a~~~~~~vl~iDEid~l 155 (355)
T 2qp9_X 119 -----D----LVSKWM----G-ESEKLVKQLFAMARENKPSIIFIDQVDAL 155 (355)
T ss_dssp -----H----HHSCC--------CHHHHHHHHHHHHHTSSEEEEEECGGGG
T ss_pred -----H----Hhhhhc----c-hHHHHHHHHHHHHHHcCCeEEEEechHhh
Confidence 1 111110 1 01122344444444467899999999865
No 42
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=98.75 E-value=4.3e-08 Score=79.80 Aligned_cols=50 Identities=20% Similarity=0.317 Sum_probs=44.0
Q ss_pred CcccccchHHHHHHHHHHhccCCccEEEEEeCCCCcHHHHHHHHHhHHhh
Q 035585 24 GYEAFKSRLSTLKSIQDALTDVNVNIVGVYGMGGIGKTTLVKEFARQASE 73 (183)
Q Consensus 24 ~~~~~~gR~~~l~~l~~~l~~~~~~~v~i~G~~G~GKTtL~~~~~~~~~~ 73 (183)
....++||+.++..+...+.+.....++|+|++|+|||++++.++..+..
T Consensus 178 ~ld~iiGr~~~i~~l~~~l~r~~~~~~LL~G~pG~GKT~la~~la~~l~~ 227 (468)
T 3pxg_A 178 SLDPVIGRSKEIQRVIEVLSRRTKNNPVLIGEPGVGKTAIAEGLAQQIIN 227 (468)
T ss_dssp CSCCCCCCHHHHHHHHHHHHCSSSCEEEEESCTTTTTHHHHHHHHHHHHS
T ss_pred CCCCccCcHHHHHHHHHHHhccCCCCeEEECCCCCCHHHHHHHHHHHHHh
Confidence 34569999999999999998766778899999999999999999998754
No 43
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=98.74 E-value=8.2e-08 Score=77.68 Aligned_cols=99 Identities=16% Similarity=0.229 Sum_probs=60.3
Q ss_pred cCCCcccccchHHHHHHHHHHhc------------cCCccEEEEEeCCCCcHHHHHHHHHhHHhhhhcccceEEEEecCC
Q 035585 21 SNKGYEAFKSRLSTLKSIQDALT------------DVNVNIVGVYGMGGIGKTTLVKEFARQASEEKLFDQVVFSEVSQT 88 (183)
Q Consensus 21 ~~~~~~~~~gR~~~l~~l~~~l~------------~~~~~~v~i~G~~G~GKTtL~~~~~~~~~~~~~~~~~~~~~~~~~ 88 (183)
|+.....+.|.+...+.|.+.+. ....+.++|+|++|+|||+||+.++...... ..+.++++..
T Consensus 129 ~~~~~~di~G~~~~k~~l~~~v~~p~~~~~~~~~~~~~~~~vLL~GppGtGKT~lA~aia~~~~~~----~~~~v~~~~l 204 (444)
T 2zan_A 129 PNVKWSDVAGLEGAKEALKEAVILPIKFPHLFTGKRTPWRGILLFGPPGTGKSYLAKAVATEANNS----TFFSISSSDL 204 (444)
T ss_dssp CCCCGGGSCSCHHHHHHHHHHHTHHHHCTTTTSGGGCCCSEEEEECSTTSSHHHHHHHHHHHCCSS----EEEEECCC--
T ss_pred CCCCHHHhcCHHHHHHHHHHHHHHHhhCHHHhhccCCCCceEEEECCCCCCHHHHHHHHHHHcCCC----CEEEEeHHHH
Confidence 44555678899998888887652 2345789999999999999999999876211 1223333211
Q ss_pred cCHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHHhcCCeEEEEEeCCCCc
Q 035585 89 PDIKKIHGEIAEKLGLEFSEEAESRRASRLYERLKKEKMILVILDNIWKY 138 (183)
Q Consensus 89 ~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~llvlD~~~~~ 138 (183)
..... +.. ...+..++.......+.+|+|||++.+
T Consensus 205 ------~~~~~---g~~------~~~~~~~f~~a~~~~~~vl~iDEid~l 239 (444)
T 2zan_A 205 ------VSKWL---GES------EKLVKNLFQLARENKPSIIFIDEIDSL 239 (444)
T ss_dssp ----------------C------CCTHHHHHHHHHHSCSEEEEESCTTTT
T ss_pred ------Hhhhc---chH------HHHHHHHHHHHHHcCCeEEEEechHhh
Confidence 11111 100 011233444444467889999999866
No 44
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=98.74 E-value=2.7e-08 Score=76.77 Aligned_cols=52 Identities=19% Similarity=0.283 Sum_probs=42.4
Q ss_pred cCCCcccccchHHHHHHHHHHhc-----cCCccEEEEEeCCCCcHHHHHHHHHhHHh
Q 035585 21 SNKGYEAFKSRLSTLKSIQDALT-----DVNVNIVGVYGMGGIGKTTLVKEFARQAS 72 (183)
Q Consensus 21 ~~~~~~~~~gR~~~l~~l~~~l~-----~~~~~~v~i~G~~G~GKTtL~~~~~~~~~ 72 (183)
.|.....|+|+...+..+..++. ......++|+|++|+|||++|+.+++...
T Consensus 7 ~p~~~~~~ig~~~~~~~l~~~l~~~~~~~~~~~~vll~G~~GtGKT~la~~i~~~~~ 63 (324)
T 1hqc_A 7 RPKTLDEYIGQERLKQKLRVYLEAAKARKEPLEHLLLFGPPGLGKTTLAHVIAHELG 63 (324)
T ss_dssp CCCSTTTCCSCHHHHHHHHHHHHHHHHHCSCCCCCEEECCTTCCCHHHHHHHHHHHT
T ss_pred CcccHHHhhCHHHHHHHHHHHHHHHHccCCCCCcEEEECCCCCCHHHHHHHHHHHhC
Confidence 34556789999999998888775 23457899999999999999999988764
No 45
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=98.70 E-value=1.6e-07 Score=80.70 Aligned_cols=103 Identities=17% Similarity=0.276 Sum_probs=66.3
Q ss_pred CCcccccchHHHHHHHHHHhccCCccEEEEEeCCCCcHHHHHHHHHhHHhhhhc----ccc-eEEEEecCCcCHHHHHHH
Q 035585 23 KGYEAFKSRLSTLKSIQDALTDVNVNIVGVYGMGGIGKTTLVKEFARQASEEKL----FDQ-VVFSEVSQTPDIKKIHGE 97 (183)
Q Consensus 23 ~~~~~~~gR~~~l~~l~~~l~~~~~~~v~i~G~~G~GKTtL~~~~~~~~~~~~~----~~~-~~~~~~~~~~~~~~~~~~ 97 (183)
.....++||+.++..+.+.+.......++|+|++|+|||++++.++..+..... ... ++.+++.....
T Consensus 183 ~~~d~~iGr~~~i~~l~~~l~~~~~~~vlL~G~~GtGKT~la~~la~~l~~~~v~~~~~~~~~~~~~~~~l~~------- 255 (758)
T 1r6b_X 183 GGIDPLIGREKELERAIQVLCRRRKNNPLLVGESGVGKTAIAEGLAWRIVQGDVPEVMADCTIYSLDIGSLLA------- 255 (758)
T ss_dssp TCSCCCCSCHHHHHHHHHHHTSSSSCEEEEECCTTSSHHHHHHHHHHHHHHTCSCGGGTTCEEEECCCC---C-------
T ss_pred CCCCCccCCHHHHHHHHHHHhccCCCCeEEEcCCCCCHHHHHHHHHHHHHhCCCChhhcCCEEEEEcHHHHhc-------
Confidence 345578999999999999998777788999999999999999999988754321 112 22222111100
Q ss_pred HHHHhCCCchhHHHHHHHHHHHHHHhcCCeEEEEEeCCCCc
Q 035585 98 IAEKLGLEFSEEAESRRASRLYERLKKEKMILVILDNIWKY 138 (183)
Q Consensus 98 i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~llvlD~~~~~ 138 (183)
+..... ........++..+...++.+|+|||++.+
T Consensus 256 -----~~~~~g-~~e~~l~~~~~~~~~~~~~iL~IDEi~~l 290 (758)
T 1r6b_X 256 -----GTKYRG-DFEKRFKALLKQLEQDTNSILFIDEIHTI 290 (758)
T ss_dssp -----CCCCSS-CHHHHHHHHHHHHSSSSCEEEEETTTTTT
T ss_pred -----cccccc-hHHHHHHHHHHHHHhcCCeEEEEechHHH
Confidence 000111 12223344555555456799999999866
No 46
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=98.69 E-value=1.1e-08 Score=78.59 Aligned_cols=106 Identities=15% Similarity=0.250 Sum_probs=62.3
Q ss_pred ccccchHHHHHHHHHHhccC---------CccEEEEEeCCCCcHHHHHHHHHhHHhhhhcccceEEEEecCCcCHHHHHH
Q 035585 26 EAFKSRLSTLKSIQDALTDV---------NVNIVGVYGMGGIGKTTLVKEFARQASEEKLFDQVVFSEVSQTPDIKKIHG 96 (183)
Q Consensus 26 ~~~~gR~~~l~~l~~~l~~~---------~~~~v~i~G~~G~GKTtL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 (183)
..++|....++.+...+... +...++++|++|+|||++|+.++...... ....++++++....... ..
T Consensus 17 ~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~ll~G~~GtGKt~la~~la~~~~~~--~~~~~~~~~~~~~~~~~-~~ 93 (311)
T 4fcw_A 17 KRVVGQDEAIRAVADAIRRARAGLKDPNRPIGSFLFLGPTGVGKTELAKTLAATLFDT--EEAMIRIDMTEYMEKHA-VS 93 (311)
T ss_dssp TTCCSCHHHHHHHHHHHHHHHHTCSCTTSCSEEEEEESCSSSSHHHHHHHHHHHHHSC--GGGEEEEEGGGCCSTTH-HH
T ss_pred hhcCCHHHHHHHHHHHHHHHhcCCCCCCCCceEEEEECCCCcCHHHHHHHHHHHHcCC--CcceEEeeccccccccc-HH
Confidence 45789999988888877521 23579999999999999999999987543 22356666654432211 11
Q ss_pred HHHHHhCCCchhHHHHHHHHHHHHHHhcCCeEEEEEeCCCCc
Q 035585 97 EIAEKLGLEFSEEAESRRASRLYERLKKEKMILVILDNIWKY 138 (183)
Q Consensus 97 ~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~llvlD~~~~~ 138 (183)
.+ ++..... ........+...+.....-+|+|||++.+
T Consensus 94 ~l---~g~~~~~-~~~~~~~~~~~~~~~~~~~vl~lDEi~~l 131 (311)
T 4fcw_A 94 RL---IGAPPGY-VGYEEGGQLTEAVRRRPYSVILFDAIEKA 131 (311)
T ss_dssp HH---HCCCTTS-TTTTTCCHHHHHHHHCSSEEEEEETGGGS
T ss_pred Hh---cCCCCcc-ccccccchHHHHHHhCCCeEEEEeChhhc
Confidence 22 1111000 00000012222333345579999999866
No 47
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=98.69 E-value=1.1e-07 Score=74.74 Aligned_cols=49 Identities=16% Similarity=0.247 Sum_probs=38.4
Q ss_pred cccccchHHHHHHHH---HHhccCC--ccEEEEEeCCCCcHHHHHHHHHhHHhh
Q 035585 25 YEAFKSRLSTLKSIQ---DALTDVN--VNIVGVYGMGGIGKTTLVKEFARQASE 73 (183)
Q Consensus 25 ~~~~~gR~~~l~~l~---~~l~~~~--~~~v~i~G~~G~GKTtL~~~~~~~~~~ 73 (183)
...|+|++.....+. ..+.... .+.++|+|++|+|||++|+.+++.+..
T Consensus 43 ~~~ivG~~~~~~~l~~l~~~~~~~~~~~~~vLl~GppGtGKT~la~~la~~l~~ 96 (368)
T 3uk6_A 43 SQGMVGQLAARRAAGVVLEMIREGKIAGRAVLIAGQPGTGKTAIAMGMAQALGP 96 (368)
T ss_dssp ETTEESCHHHHHHHHHHHHHHHTTCCTTCEEEEEESTTSSHHHHHHHHHHHHCS
T ss_pred hhhccChHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCCCHHHHHHHHHHHhcc
Confidence 668999999877644 4444333 358999999999999999999998764
No 48
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.69 E-value=1e-07 Score=75.76 Aligned_cols=96 Identities=18% Similarity=0.251 Sum_probs=62.5
Q ss_pred CCcccccchHHHHHHHHHHhc-------------cCCccEEEEEeCCCCcHHHHHHHHHhHHhhhhcccceEEEEecCCc
Q 035585 23 KGYEAFKSRLSTLKSIQDALT-------------DVNVNIVGVYGMGGIGKTTLVKEFARQASEEKLFDQVVFSEVSQTP 89 (183)
Q Consensus 23 ~~~~~~~gR~~~l~~l~~~l~-------------~~~~~~v~i~G~~G~GKTtL~~~~~~~~~~~~~~~~~~~~~~~~~~ 89 (183)
-...++-|-++..+.|.+... -..++-++++||||+|||+||+++++..... .+.++.+.-.
T Consensus 145 v~~~dIgGl~~~k~~l~e~v~~Pl~~pe~f~~~gi~~prGvLL~GPPGTGKTllAkAiA~e~~~~-----f~~v~~s~l~ 219 (405)
T 4b4t_J 145 STYDMVGGLTKQIKEIKEVIELPVKHPELFESLGIAQPKGVILYGPPGTGKTLLARAVAHHTDCK-----FIRVSGAELV 219 (405)
T ss_dssp CCGGGSCSCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCCCEEEESCSSSSHHHHHHHHHHHHTCE-----EEEEEGGGGS
T ss_pred CCHHHhCCHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCceEEeCCCCCCHHHHHHHHHHhhCCC-----ceEEEhHHhh
Confidence 334555677777777766542 2345789999999999999999999986543 2333333211
Q ss_pred CHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHHhcCCeEEEEEeCCCCc
Q 035585 90 DIKKIHGEIAEKLGLEFSEEAESRRASRLYERLKKEKMILVILDNIWKY 138 (183)
Q Consensus 90 ~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~llvlD~~~~~ 138 (183)
....+ .....+..++...+...+.+|+|||+|..
T Consensus 220 --------------sk~vG-ese~~vr~lF~~Ar~~aP~IIFiDEiDai 253 (405)
T 4b4t_J 220 --------------QKYIG-EGSRMVRELFVMAREHAPSIIFMDEIDSI 253 (405)
T ss_dssp --------------CSSTT-HHHHHHHHHHHHHHHTCSEEEEEESSSCC
T ss_pred --------------ccccc-hHHHHHHHHHHHHHHhCCceEeeecchhh
Confidence 11111 12334566666666688999999999855
No 49
>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*
Probab=98.67 E-value=1.2e-07 Score=73.97 Aligned_cols=118 Identities=8% Similarity=0.041 Sum_probs=69.8
Q ss_pred chHHHHHHHHHHhccCC-ccEEEEEeCCCCcHHHHHHHHHhHHhhhhcc-------------------cceEEEEecCCc
Q 035585 30 SRLSTLKSIQDALTDVN-VNIVGVYGMGGIGKTTLVKEFARQASEEKLF-------------------DQVVFSEVSQTP 89 (183)
Q Consensus 30 gR~~~l~~l~~~l~~~~-~~~v~i~G~~G~GKTtL~~~~~~~~~~~~~~-------------------~~~~~~~~~~~~ 89 (183)
-.++..+.+.+.+.+++ ++.++++|++|+|||++++.++..+...... ..+.+++....
T Consensus 6 w~~~~~~~l~~~i~~~~~~~a~L~~G~~G~GKt~~a~~la~~l~~~~~~~~~~c~~c~~c~~~~~~~~~d~~~~~~~~~- 84 (334)
T 1a5t_A 6 WLRPDFEKLVASYQAGRGHHALLIQALPGMGDDALIYALSRYLLCQQPQGHKSCGHCRGCQLMQAGTHPDYYTLAPEKG- 84 (334)
T ss_dssp GGHHHHHHHHHHHHTTCCCSEEEEECCTTSCHHHHHHHHHHHHTCSSCBTTBCCSCSHHHHHHHHTCCTTEEEECCCTT-
T ss_pred chHHHHHHHHHHHHcCCcceeEEEECCCCchHHHHHHHHHHHHhCCCCCCCCCCCCCHHHHHHhcCCCCCEEEEecccc-
Confidence 34566777887776554 4679999999999999999999887543110 01122221100
Q ss_pred CHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHHh----cCCeEEEEEeCCCCcc--cccccCcCCCCCCCCcEEEEEecC
Q 035585 90 DIKKIHGEIAEKLGLEFSEEAESRRASRLYERLK----KEKMILVILDNIWKYL--DLETVGIPFGDDHRGCKLLLTARD 163 (183)
Q Consensus 90 ~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~----~~~~~llvlD~~~~~~--~~~~l~~~~~~~~~~~~iiitsr~ 163 (183)
......+.++.+.+.+. .+++.++||||+|.+. ..+.++..+.....++.+|++|.+
T Consensus 85 -----------------~~~~~i~~ir~l~~~~~~~~~~~~~kvviIdead~l~~~a~naLLk~lEep~~~~~~Il~t~~ 147 (334)
T 1a5t_A 85 -----------------KNTLGVDAVREVTEKLNEHARLGGAKVVWVTDAALLTDAAANALLKTLEEPPAETWFFLATRE 147 (334)
T ss_dssp -----------------CSSBCHHHHHHHHHHTTSCCTTSSCEEEEESCGGGBCHHHHHHHHHHHTSCCTTEEEEEEESC
T ss_pred -----------------CCCCCHHHHHHHHHHHhhccccCCcEEEEECchhhcCHHHHHHHHHHhcCCCCCeEEEEEeCC
Confidence 00001111223333332 2567899999999774 344555555555567788888776
Q ss_pred hH
Q 035585 164 CN 165 (183)
Q Consensus 164 ~~ 165 (183)
.+
T Consensus 148 ~~ 149 (334)
T 1a5t_A 148 PE 149 (334)
T ss_dssp GG
T ss_pred hH
Confidence 53
No 50
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=98.66 E-value=1.4e-09 Score=74.69 Aligned_cols=47 Identities=11% Similarity=0.111 Sum_probs=34.3
Q ss_pred ccccchHHHHHHHHHHhc--cCCccEEEEEeCCCCcHHHHHHHHHhHHh
Q 035585 26 EAFKSRLSTLKSIQDALT--DVNVNIVGVYGMGGIGKTTLVKEFARQAS 72 (183)
Q Consensus 26 ~~~~gR~~~l~~l~~~l~--~~~~~~v~i~G~~G~GKTtL~~~~~~~~~ 72 (183)
..++|+...+..+.+.+. ......+.|+|++|+|||++|+.++....
T Consensus 4 ~~~iG~s~~~~~l~~~~~~~~~~~~~vll~G~~GtGKt~lA~~i~~~~~ 52 (143)
T 3co5_A 4 FDKLGNSAAIQEMNREVEAAAKRTSPVFLTGEAGSPFETVARYFHKNGT 52 (143)
T ss_dssp ----CCCHHHHHHHHHHHHHHTCSSCEEEEEETTCCHHHHHGGGCCTTS
T ss_pred cCceeCCHHHHHHHHHHHHHhCCCCcEEEECCCCccHHHHHHHHHHhCC
Confidence 357788888888887765 23445689999999999999999887643
No 51
>2gno_A DNA polymerase III, gamma subunit-related protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: DNA; 2.00A {Thermotoga maritima} SCOP: a.80.1.1 c.37.1.20
Probab=98.66 E-value=9.3e-08 Score=73.68 Aligned_cols=117 Identities=9% Similarity=0.012 Sum_probs=70.4
Q ss_pred hHHHHHHHHHHhccCCccEEEEEeCCCCcHHHHHHHHHhHHhhh-hcccceEEEEecC-CcCHHHHHHHHHHHhCCCchh
Q 035585 31 RLSTLKSIQDALTDVNVNIVGVYGMGGIGKTTLVKEFARQASEE-KLFDQVVFSEVSQ-TPDIKKIHGEIAEKLGLEFSE 108 (183)
Q Consensus 31 R~~~l~~l~~~l~~~~~~~v~i~G~~G~GKTtL~~~~~~~~~~~-~~~~~~~~~~~~~-~~~~~~~~~~i~~~l~~~~~~ 108 (183)
-+..++.|.+.+.+.+.+.++++||+|+|||++++.+++..... .....+.+++.+. ...... .+.+.+.+...
T Consensus 2 ~~~~~~~L~~~i~~~~~~~~Lf~Gp~G~GKtt~a~~la~~~~~~~~~~~d~~~l~~~~~~~~id~-ir~li~~~~~~--- 77 (305)
T 2gno_A 2 AKDQLETLKRIIEKSEGISILINGEDLSYPREVSLELPEYVEKFPPKASDVLEIDPEGENIGIDD-IRTIKDFLNYS--- 77 (305)
T ss_dssp --CHHHHHHHHHHTCSSEEEEEECSSSSHHHHHHHHHHHHHHTSCCCTTTEEEECCSSSCBCHHH-HHHHHHHHTSC---
T ss_pred hHHHHHHHHHHHHCCCCcEEEEECCCCCCHHHHHHHHHHhCchhhccCCCEEEEcCCcCCCCHHH-HHHHHHHHhhc---
Confidence 34566777887776667899999999999999999998753211 0012344444432 222221 12222222110
Q ss_pred HHHHHHHHHHHHHHhcCCeEEEEEeCCCCcc--cccccCcCCCCCCCCcEEEEEecCh
Q 035585 109 EAESRRASRLYERLKKEKMILVILDNIWKYL--DLETVGIPFGDDHRGCKLLLTARDC 164 (183)
Q Consensus 109 ~~~~~~~~~~~~~~~~~~~~llvlD~~~~~~--~~~~l~~~~~~~~~~~~iiitsr~~ 164 (183)
-...++.++||||++.+. ..+.++..+....+.+.+|++|.+.
T Consensus 78 -------------p~~~~~kvviIdead~lt~~a~naLLk~LEep~~~t~fIl~t~~~ 122 (305)
T 2gno_A 78 -------------PELYTRKYVIVHDCERMTQQAANAFLKALEEPPEYAVIVLNTRRW 122 (305)
T ss_dssp -------------CSSSSSEEEEETTGGGBCHHHHHHTHHHHHSCCTTEEEEEEESCG
T ss_pred -------------cccCCceEEEeccHHHhCHHHHHHHHHHHhCCCCCeEEEEEECCh
Confidence 012467899999999774 4555666665666678888887654
No 52
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.65 E-value=1.8e-07 Score=75.26 Aligned_cols=95 Identities=18% Similarity=0.308 Sum_probs=61.1
Q ss_pred CcccccchHHHHHHHHHHhc-------------cCCccEEEEEeCCCCcHHHHHHHHHhHHhhhhcccceEEEEecCCcC
Q 035585 24 GYEAFKSRLSTLKSIQDALT-------------DVNVNIVGVYGMGGIGKTTLVKEFARQASEEKLFDQVVFSEVSQTPD 90 (183)
Q Consensus 24 ~~~~~~gR~~~l~~l~~~l~-------------~~~~~~v~i~G~~G~GKTtL~~~~~~~~~~~~~~~~~~~~~~~~~~~ 90 (183)
...++.|-++..+.|.+.+. -..++-++++||||+|||+||+++++..... .+.++.+.-.+
T Consensus 179 ~~~digGl~~~k~~l~e~v~~pl~~p~~f~~~g~~~prGvLL~GPPGtGKTllAkAiA~e~~~~-----~~~v~~s~l~s 253 (437)
T 4b4t_L 179 TFDGIGGLTEQIRELREVIELPLKNPEIFQRVGIKPPKGVLLYGPPGTGKTLLAKAVAATIGAN-----FIFSPASGIVD 253 (437)
T ss_dssp CSGGGCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCCEEEEESCTTSSHHHHHHHHHHHHTCE-----EEEEEGGGTCC
T ss_pred ChhHhCChHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCeEEEECCCCCcHHHHHHHHHHHhCCC-----EEEEehhhhcc
Confidence 34455666666666665432 2356789999999999999999999986543 23334332211
Q ss_pred HHHHHHHHHHHhCCCchhHHHHHHHHHHHHHHhcCCeEEEEEeCCCCc
Q 035585 91 IKKIHGEIAEKLGLEFSEEAESRRASRLYERLKKEKMILVILDNIWKY 138 (183)
Q Consensus 91 ~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~llvlD~~~~~ 138 (183)
...+ .....+..++.......+.+|+|||+|..
T Consensus 254 --------------k~~G-ese~~ir~~F~~A~~~~P~IifiDEiDai 286 (437)
T 4b4t_L 254 --------------KYIG-ESARIIREMFAYAKEHEPCIIFMDEVDAI 286 (437)
T ss_dssp --------------SSSS-HHHHHHHHHHHHHHHSCSEEEEEECCCSS
T ss_pred --------------ccch-HHHHHHHHHHHHHHhcCCceeeeeccccc
Confidence 1111 12234455666666688999999999854
No 53
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=98.65 E-value=2.6e-07 Score=70.94 Aligned_cols=98 Identities=14% Similarity=0.205 Sum_probs=60.4
Q ss_pred cCCCcccccchHHHHHHHHHHhcc-------------CCccEEEEEeCCCCcHHHHHHHHHhHHhhhhcccceEEEEecC
Q 035585 21 SNKGYEAFKSRLSTLKSIQDALTD-------------VNVNIVGVYGMGGIGKTTLVKEFARQASEEKLFDQVVFSEVSQ 87 (183)
Q Consensus 21 ~~~~~~~~~gR~~~l~~l~~~l~~-------------~~~~~v~i~G~~G~GKTtL~~~~~~~~~~~~~~~~~~~~~~~~ 87 (183)
|.....++.|.+...+.|.+++.. .....++|+|++|+|||+||+.++...... .+.+++
T Consensus 10 ~~~~~~di~G~~~~~~~l~~~v~~~~~~~~~~~~~~~~~~~~vLL~Gp~GtGKT~la~ala~~~~~~-----~i~v~~-- 82 (301)
T 3cf0_A 10 PQVTWEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQAN-----FISIKG-- 82 (301)
T ss_dssp CCCCGGGSCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCSEEEEECSSSSSHHHHHHHHHHHTTCE-----EEEECH--
T ss_pred CCCCHHHhCCHHHHHHHHHHHHHHHhhCHHHHHHcCCCCCceEEEECCCCcCHHHHHHHHHHHhCCC-----EEEEEh--
Confidence 334445678888888777776531 345689999999999999999999876421 222222
Q ss_pred CcCHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHHhcCCeEEEEEeCCCCc
Q 035585 88 TPDIKKIHGEIAEKLGLEFSEEAESRRASRLYERLKKEKMILVILDNIWKY 138 (183)
Q Consensus 88 ~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~llvlD~~~~~ 138 (183)
..+..... +.. ......++.......+.+|+|||++.+
T Consensus 83 ----~~l~~~~~---g~~------~~~~~~~f~~a~~~~p~il~iDEid~l 120 (301)
T 3cf0_A 83 ----PELLTMWF---GES------EANVREIFDKARQAAPCVLFFDELDSI 120 (301)
T ss_dssp ----HHHHHHHH---TTC------TTHHHHHHHHHHHTCSEEEEECSTTHH
T ss_pred ----HHHHhhhc---Cch------HHHHHHHHHHHHhcCCeEEEEEChHHH
Confidence 12222221 111 112234444444467899999999854
No 54
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=98.64 E-value=1.7e-07 Score=67.58 Aligned_cols=53 Identities=15% Similarity=0.210 Sum_probs=36.7
Q ss_pred HHHHHHHHHHhccC----CccEEEEEeCCCCcHHHHHHHHHhHHhhhhcccceEEEEec
Q 035585 32 LSTLKSIQDALTDV----NVNIVGVYGMGGIGKTTLVKEFARQASEEKLFDQVVFSEVS 86 (183)
Q Consensus 32 ~~~l~~l~~~l~~~----~~~~v~i~G~~G~GKTtL~~~~~~~~~~~~~~~~~~~~~~~ 86 (183)
...++.+..++.+. ....+.|+|++|+|||+|++.+++..... ...++|++++
T Consensus 35 ~~~~~~~~~~~~~~~~~~~~~~~~l~G~~GtGKT~la~~i~~~~~~~--~~~~~~~~~~ 91 (202)
T 2w58_A 35 IKAIRFAERFVAEYEPGKKMKGLYLHGSFGVGKTYLLAAIANELAKR--NVSSLIVYVP 91 (202)
T ss_dssp HHHHHHHHHHHHHCCSSCCCCEEEEECSTTSSHHHHHHHHHHHHHTT--TCCEEEEEHH
T ss_pred HHHHHHHHHHHHHhhhccCCCeEEEECCCCCCHHHHHHHHHHHHHHc--CCeEEEEEhH
Confidence 34555555655432 22789999999999999999999888654 3345665543
No 55
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=98.62 E-value=1.7e-07 Score=80.52 Aligned_cols=51 Identities=20% Similarity=0.314 Sum_probs=44.5
Q ss_pred CCcccccchHHHHHHHHHHhccCCccEEEEEeCCCCcHHHHHHHHHhHHhh
Q 035585 23 KGYEAFKSRLSTLKSIQDALTDVNVNIVGVYGMGGIGKTTLVKEFARQASE 73 (183)
Q Consensus 23 ~~~~~~~gR~~~l~~l~~~l~~~~~~~v~i~G~~G~GKTtL~~~~~~~~~~ 73 (183)
.....++||+.++..+...+.......++|+|++|+|||++|+.++..+..
T Consensus 177 ~~ld~iiG~~~~i~~l~~~l~~~~~~~vLL~G~pGtGKT~la~~la~~l~~ 227 (758)
T 3pxi_A 177 DSLDPVIGRSKEIQRVIEVLSRRTKNNPVLIGEPGVGKTAIAEGLAQQIIN 227 (758)
T ss_dssp SCSCCCCCCHHHHHHHHHHHHCSSSCEEEEESCTTTTTHHHHHHHHHHHHS
T ss_pred CCCCCccCchHHHHHHHHHHhCCCCCCeEEECCCCCCHHHHHHHHHHHHhc
Confidence 344579999999999999998766778999999999999999999998743
No 56
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.61 E-value=1.3e-07 Score=75.98 Aligned_cols=98 Identities=15% Similarity=0.182 Sum_probs=63.2
Q ss_pred cCCCcccccchHHHHHHHHHHhc-------------cCCccEEEEEeCCCCcHHHHHHHHHhHHhhhhcccceEEEEecC
Q 035585 21 SNKGYEAFKSRLSTLKSIQDALT-------------DVNVNIVGVYGMGGIGKTTLVKEFARQASEEKLFDQVVFSEVSQ 87 (183)
Q Consensus 21 ~~~~~~~~~gR~~~l~~l~~~l~-------------~~~~~~v~i~G~~G~GKTtL~~~~~~~~~~~~~~~~~~~~~~~~ 87 (183)
|.....++.|-++..+.|.+.+. -..++-++++||||+|||+||++++...... .+.++.+.
T Consensus 176 p~~t~~digGl~~~k~~l~e~v~~pl~~pe~f~~~g~~~prGvLLyGPPGTGKTllAkAiA~e~~~~-----f~~v~~s~ 250 (434)
T 4b4t_M 176 PTETYSDVGGLDKQIEELVEAIVLPMKRADKFKDMGIRAPKGALMYGPPGTGKTLLARACAAQTNAT-----FLKLAAPQ 250 (434)
T ss_dssp CSCCGGGSCSCHHHHHHHHHHTHHHHHCSHHHHHHCCCCCCEEEEESCTTSSHHHHHHHHHHHHTCE-----EEEEEGGG
T ss_pred CCCChHhcCcHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCeeEEECcCCCCHHHHHHHHHHHhCCC-----EEEEehhh
Confidence 44455667788887777776532 2356789999999999999999999986543 22333322
Q ss_pred CcCHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHHhcCCeEEEEEeCCCCc
Q 035585 88 TPDIKKIHGEIAEKLGLEFSEEAESRRASRLYERLKKEKMILVILDNIWKY 138 (183)
Q Consensus 88 ~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~llvlD~~~~~ 138 (183)
- .....+. ....+..++...+...+.+|+|||+|..
T Consensus 251 l--------------~~~~vGe-se~~ir~lF~~A~~~aP~IifiDEiDal 286 (434)
T 4b4t_M 251 L--------------VQMYIGE-GAKLVRDAFALAKEKAPTIIFIDELDAI 286 (434)
T ss_dssp G--------------CSSCSSH-HHHHHHHHHHHHHHHCSEEEEEECTHHH
T ss_pred h--------------hhcccch-HHHHHHHHHHHHHhcCCeEEeecchhhh
Confidence 1 1111111 2234455555555578999999999743
No 57
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=98.59 E-value=1.7e-08 Score=75.99 Aligned_cols=61 Identities=10% Similarity=0.101 Sum_probs=41.5
Q ss_pred ccccchHHHHHHHHHHhc--cCCccEEEEEeCCCCcHHHHHHHHHhHHhhhhcccceEEEEecCC
Q 035585 26 EAFKSRLSTLKSIQDALT--DVNVNIVGVYGMGGIGKTTLVKEFARQASEEKLFDQVVFSEVSQT 88 (183)
Q Consensus 26 ~~~~gR~~~l~~l~~~l~--~~~~~~v~i~G~~G~GKTtL~~~~~~~~~~~~~~~~~~~~~~~~~ 88 (183)
..++|+...+..+.+.+. ......++|+|++|+|||++|+.+++..... ....++++++..
T Consensus 6 ~~~ig~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKt~la~~i~~~~~~~--~~~~~~v~~~~~ 68 (265)
T 2bjv_A 6 DNLLGEANSFLEVLEQVSHLAPLDKPVLIIGERGTGKELIASRLHYLSSRW--QGPFISLNCAAL 68 (265)
T ss_dssp ----CCCHHHHHHHHHHHHHTTSCSCEEEECCTTSCHHHHHHHHHHTSTTT--TSCEEEEEGGGS
T ss_pred ccceeCCHHHHHHHHHHHHHhCCCCCEEEECCCCCcHHHHHHHHHHhcCcc--CCCeEEEecCCC
Confidence 457788888887776554 2334678999999999999999999876532 223556666654
No 58
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.57 E-value=2.8e-07 Score=73.98 Aligned_cols=94 Identities=18% Similarity=0.213 Sum_probs=60.9
Q ss_pred CcccccchHHHHHHHHHHhc-------------cCCccEEEEEeCCCCcHHHHHHHHHhHHhhhhcccceEEEEecCCcC
Q 035585 24 GYEAFKSRLSTLKSIQDALT-------------DVNVNIVGVYGMGGIGKTTLVKEFARQASEEKLFDQVVFSEVSQTPD 90 (183)
Q Consensus 24 ~~~~~~gR~~~l~~l~~~l~-------------~~~~~~v~i~G~~G~GKTtL~~~~~~~~~~~~~~~~~~~~~~~~~~~ 90 (183)
...++.|-+...+.|.+.+. -..++-++++||+|+|||+||+++++..... .+.++.+.-.+
T Consensus 170 ~~~digGl~~~k~~l~e~v~~pl~~p~~~~~~g~~~prGiLL~GPPGtGKT~lakAiA~~~~~~-----~~~v~~~~l~~ 244 (428)
T 4b4t_K 170 TYADVGGLDMQKQEIREAVELPLVQADLYEQIGIDPPRGVLLYGPPGTGKTMLVKAVANSTKAA-----FIRVNGSEFVH 244 (428)
T ss_dssp CGGGSCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCCEEEEESCTTTTHHHHHHHHHHHHTCE-----EEEEEGGGTCC
T ss_pred CHHHhccHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCceEEEECCCCCCHHHHHHHHHHHhCCC-----eEEEecchhhc
Confidence 34456677777777766442 2356779999999999999999999986543 23333332111
Q ss_pred HHHHHHHHHHHhCCCchhHHHHHHHHHHHHHHhcCCeEEEEEeCCCC
Q 035585 91 IKKIHGEIAEKLGLEFSEEAESRRASRLYERLKKEKMILVILDNIWK 137 (183)
Q Consensus 91 ~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~llvlD~~~~ 137 (183)
...+ .....+..++...+...+.+|+|||+|.
T Consensus 245 --------------~~~G-e~e~~ir~lF~~A~~~aP~IifiDEiD~ 276 (428)
T 4b4t_K 245 --------------KYLG-EGPRMVRDVFRLARENAPSIIFIDEVDS 276 (428)
T ss_dssp --------------SSCS-HHHHHHHHHHHHHHHTCSEEEEEECTHH
T ss_pred --------------cccc-hhHHHHHHHHHHHHHcCCCeeechhhhh
Confidence 1111 1223445666666668899999999973
No 59
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=98.56 E-value=2e-07 Score=68.23 Aligned_cols=40 Identities=18% Similarity=0.299 Sum_probs=30.6
Q ss_pred CccEEEEEeCCCCcHHHHHHHHHhHHhhhhcccceEEEEecC
Q 035585 46 NVNIVGVYGMGGIGKTTLVKEFARQASEEKLFDQVVFSEVSQ 87 (183)
Q Consensus 46 ~~~~v~i~G~~G~GKTtL~~~~~~~~~~~~~~~~~~~~~~~~ 87 (183)
+..+++|+|++|+|||||++.++...... -..++|+....
T Consensus 22 ~G~~~~i~G~~GsGKTtl~~~l~~~~~~~--~~~v~~~~~~~ 61 (235)
T 2w0m_A 22 QGFFIALTGEPGTGKTIFSLHFIAKGLRD--GDPCIYVTTEE 61 (235)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHHHHHHHH--TCCEEEEESSS
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHHHHHC--CCeEEEEEccc
Confidence 34689999999999999999999776543 33566766544
No 60
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=98.56 E-value=2.3e-07 Score=75.54 Aligned_cols=95 Identities=18% Similarity=0.242 Sum_probs=58.0
Q ss_pred CcccccchHHHHHHHHHHhc---c---------CCccEEEEEeCCCCcHHHHHHHHHhHHhhhhcccceEEEEecCCcCH
Q 035585 24 GYEAFKSRLSTLKSIQDALT---D---------VNVNIVGVYGMGGIGKTTLVKEFARQASEEKLFDQVVFSEVSQTPDI 91 (183)
Q Consensus 24 ~~~~~~gR~~~l~~l~~~l~---~---------~~~~~v~i~G~~G~GKTtL~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 91 (183)
...++.|.++.++.+.+... + ..++-++|+|++|+|||+|++.++..... ..++++++.....
T Consensus 14 ~f~di~G~~~~~~~l~e~v~~l~~~~~~~~~g~~~p~gvLL~GppGtGKT~Laraia~~~~~-----~f~~is~~~~~~~ 88 (476)
T 2ce7_A 14 TFKDVGGAEEAIEELKEVVEFLKDPSKFNRIGARMPKGILLVGPPGTGKTLLARAVAGEANV-----PFFHISGSDFVEL 88 (476)
T ss_dssp CGGGCCSCHHHHHHHHHHHHHHHCTHHHHTTTCCCCSEEEEECCTTSSHHHHHHHHHHHHTC-----CEEEEEGGGTTTC
T ss_pred CHHHhCCcHHHHHHHHHHHHHhhChHHHhhcCCCCCCeEEEECCCCCCHHHHHHHHHHHcCC-----CeeeCCHHHHHHH
Confidence 34567787777666665432 1 12356899999999999999999986542 2334444332111
Q ss_pred HHHHHHHHHHhCCCchhHHHHHHHHHHHHHHhcCCeEEEEEeCCCCc
Q 035585 92 KKIHGEIAEKLGLEFSEEAESRRASRLYERLKKEKMILVILDNIWKY 138 (183)
Q Consensus 92 ~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~llvlD~~~~~ 138 (183)
.... .......++.......+.+|+|||++.+
T Consensus 89 --------------~~g~-~~~~~r~lf~~A~~~~p~ILfIDEid~l 120 (476)
T 2ce7_A 89 --------------FVGV-GAARVRDLFAQAKAHAPCIVFIDEIDAV 120 (476)
T ss_dssp --------------CTTH-HHHHHHHHHHHHHHTCSEEEEEETGGGT
T ss_pred --------------Hhcc-cHHHHHHHHHHHHhcCCCEEEEechhhh
Confidence 0011 1122344555555577899999999764
No 61
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.56 E-value=3e-07 Score=73.51 Aligned_cols=98 Identities=20% Similarity=0.231 Sum_probs=62.2
Q ss_pred cCCCcccccchHHHHHHHHHHhc-------------cCCccEEEEEeCCCCcHHHHHHHHHhHHhhhhcccceEEEEecC
Q 035585 21 SNKGYEAFKSRLSTLKSIQDALT-------------DVNVNIVGVYGMGGIGKTTLVKEFARQASEEKLFDQVVFSEVSQ 87 (183)
Q Consensus 21 ~~~~~~~~~gR~~~l~~l~~~l~-------------~~~~~~v~i~G~~G~GKTtL~~~~~~~~~~~~~~~~~~~~~~~~ 87 (183)
|.-...++-|-++..+.|.+.+. -..++-++++||+|+|||+||++++...... .+.++.+.
T Consensus 177 p~v~~~DIgGld~~k~~L~e~v~~Pl~~pe~f~~~Gi~~prGvLLyGPPGTGKTlLAkAiA~e~~~~-----fi~v~~s~ 251 (437)
T 4b4t_I 177 PTESYSDIGGLESQIQEIKESVELPLTHPELYEEMGIKPPKGVILYGAPGTGKTLLAKAVANQTSAT-----FLRIVGSE 251 (437)
T ss_dssp CCCCGGGTCSCHHHHHHHHHHHHHHHHCCHHHHHHTCCCCSEEEEESSTTTTHHHHHHHHHHHHTCE-----EEEEESGG
T ss_pred CCCcceecCcHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCCCceECCCCchHHHHHHHHHHHhCCC-----EEEEEHHH
Confidence 33444455667777766665432 2356789999999999999999999986643 22333222
Q ss_pred CcCHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHHhcCCeEEEEEeCCCCc
Q 035585 88 TPDIKKIHGEIAEKLGLEFSEEAESRRASRLYERLKKEKMILVILDNIWKY 138 (183)
Q Consensus 88 ~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~llvlD~~~~~ 138 (183)
- .....+ .....+..++...+...+.+|+|||+|..
T Consensus 252 l--------------~sk~vG-esek~ir~lF~~Ar~~aP~IIfiDEiDai 287 (437)
T 4b4t_I 252 L--------------IQKYLG-DGPRLCRQIFKVAGENAPSIVFIDEIDAI 287 (437)
T ss_dssp G--------------CCSSSS-HHHHHHHHHHHHHHHTCSEEEEEEEESSS
T ss_pred h--------------hhccCc-hHHHHHHHHHHHHHhcCCcEEEEehhhhh
Confidence 1 111111 12334556666666688999999999854
No 62
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.54 E-value=4.2e-07 Score=73.35 Aligned_cols=95 Identities=16% Similarity=0.220 Sum_probs=61.8
Q ss_pred CcccccchHHHHHHHHHHhc-------------cCCccEEEEEeCCCCcHHHHHHHHHhHHhhhhcccceEEEEecCCcC
Q 035585 24 GYEAFKSRLSTLKSIQDALT-------------DVNVNIVGVYGMGGIGKTTLVKEFARQASEEKLFDQVVFSEVSQTPD 90 (183)
Q Consensus 24 ~~~~~~gR~~~l~~l~~~l~-------------~~~~~~v~i~G~~G~GKTtL~~~~~~~~~~~~~~~~~~~~~~~~~~~ 90 (183)
...++.|-++..+.|.+.+. -..++-++++||+|+|||+||++++++.... .+.++.+.-
T Consensus 207 t~~DIgGl~~~k~~L~e~V~~pl~~pe~f~~~Gi~pprGILLyGPPGTGKTlLAkAiA~e~~~~-----fi~vs~s~L-- 279 (467)
T 4b4t_H 207 TYSDVGGCKDQIEKLREVVELPLLSPERFATLGIDPPKGILLYGPPGTGKTLCARAVANRTDAT-----FIRVIGSEL-- 279 (467)
T ss_dssp CCSSCTTCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCSEEEECSCTTSSHHHHHHHHHHHHTCE-----EEEEEGGGG--
T ss_pred CHHHhccHHHHHHHHHHHHHHHhcCHHHHHHCCCCCCCceEeeCCCCCcHHHHHHHHHhccCCC-----eEEEEhHHh--
Confidence 33456677777777766432 2467889999999999999999999986543 223333221
Q ss_pred HHHHHHHHHHHhCCCchhHHHHHHHHHHHHHHhcCCeEEEEEeCCCCc
Q 035585 91 IKKIHGEIAEKLGLEFSEEAESRRASRLYERLKKEKMILVILDNIWKY 138 (183)
Q Consensus 91 ~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~llvlD~~~~~ 138 (183)
.....+ .....+..++...+...+.+|+|||++..
T Consensus 280 ------------~sk~vG-esek~ir~lF~~Ar~~aP~IIfiDEiDai 314 (467)
T 4b4t_H 280 ------------VQKYVG-EGARMVRELFEMARTKKACIIFFDEIDAV 314 (467)
T ss_dssp ------------CCCSSS-HHHHHHHHHHHHHHHTCSEEEEEECCTTT
T ss_pred ------------hcccCC-HHHHHHHHHHHHHHhcCCceEeecccccc
Confidence 111111 12234456666666688999999999855
No 63
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=98.53 E-value=4.1e-07 Score=70.32 Aligned_cols=121 Identities=18% Similarity=0.230 Sum_probs=64.6
Q ss_pred Cccccc-c--hHHHHHHHHHHhccC--CccEEEEEeCCCCcHHHHHHHHHhHHhhhhcccceEEEEecCCcCHHHHHHHH
Q 035585 24 GYEAFK-S--RLSTLKSIQDALTDV--NVNIVGVYGMGGIGKTTLVKEFARQASEEKLFDQVVFSEVSQTPDIKKIHGEI 98 (183)
Q Consensus 24 ~~~~~~-g--R~~~l~~l~~~l~~~--~~~~v~i~G~~G~GKTtL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 98 (183)
....|+ | .......+..+.... ....++|+|++|+|||+|++.+++..... ...++++++.. +...+
T Consensus 9 ~f~~fv~g~~~~~a~~~~~~~~~~~~~~~~~lll~G~~GtGKT~la~~i~~~~~~~--~~~~~~i~~~~------~~~~~ 80 (324)
T 1l8q_A 9 TLENFIVGEGNRLAYEVVKEALENLGSLYNPIFIYGSVGTGKTHLLQAAGNEAKKR--GYRVIYSSADD------FAQAM 80 (324)
T ss_dssp CSSSCCCCTTTHHHHHHHHHHHHTTTTSCSSEEEECSSSSSHHHHHHHHHHHHHHT--TCCEEEEEHHH------HHHHH
T ss_pred CcccCCCCCcHHHHHHHHHHHHhCcCCCCCeEEEECCCCCcHHHHHHHHHHHHHHC--CCEEEEEEHHH------HHHHH
Confidence 344554 3 233344455554433 35689999999999999999999987654 22355655432 22222
Q ss_pred HHHhCCCchhHHHHHHHHHHHHHHhcCCeEEEEEeCCCCccc----ccccCcCCCC-CCCCcEEEEEec
Q 035585 99 AEKLGLEFSEEAESRRASRLYERLKKEKMILVILDNIWKYLD----LETVGIPFGD-DHRGCKLLLTAR 162 (183)
Q Consensus 99 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~llvlD~~~~~~~----~~~l~~~~~~-~~~~~~iiitsr 162 (183)
...+... ....+.... .+..+|+|||++.... ...+...+.. ...+..+|+++.
T Consensus 81 ~~~~~~~--------~~~~~~~~~--~~~~vL~iDEi~~l~~~~~~~~~l~~~l~~~~~~~~~iii~~~ 139 (324)
T 1l8q_A 81 VEHLKKG--------TINEFRNMY--KSVDLLLLDDVQFLSGKERTQIEFFHIFNTLYLLEKQIILASD 139 (324)
T ss_dssp HHHHHHT--------CHHHHHHHH--HTCSEEEEECGGGGTTCHHHHHHHHHHHHHHHHTTCEEEEEES
T ss_pred HHHHHcC--------cHHHHHHHh--cCCCEEEEcCcccccCChHHHHHHHHHHHHHHHCCCeEEEEec
Confidence 2221110 011222223 2367999999986532 1222222211 123456777775
No 64
>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}
Probab=98.50 E-value=3.3e-08 Score=76.11 Aligned_cols=60 Identities=10% Similarity=0.135 Sum_probs=43.9
Q ss_pred cccchHHHHHHHHHHhc--cCCccEEEEEeCCCCcHHHHHHHHHhHHhhhhcccceEEEEecCC
Q 035585 27 AFKSRLSTLKSIQDALT--DVNVNIVGVYGMGGIGKTTLVKEFARQASEEKLFDQVVFSEVSQT 88 (183)
Q Consensus 27 ~~~gR~~~l~~l~~~l~--~~~~~~v~i~G~~G~GKTtL~~~~~~~~~~~~~~~~~~~~~~~~~ 88 (183)
.++|+...+..+.+.+. ......++|+|++|+|||++|+.+++..... ....+.+++...
T Consensus 3 ~iig~s~~~~~~~~~~~~~a~~~~~vLi~Ge~GtGKt~lAr~i~~~~~~~--~~~~v~v~~~~~ 64 (304)
T 1ojl_A 3 HMIGSSPAMQHLLNEIAMVAPSDATVLIHGDSGTGKELVARALHACSARS--DRPLVTLNCAAL 64 (304)
T ss_dssp CCCCCSHHHHHHHHHHHHHCSTTSCEEEESCTTSCHHHHHHHHHHHSSCS--SSCCCEEECSSC
T ss_pred CcEECCHHHHHHHHHHHHHhCCCCcEEEECCCCchHHHHHHHHHHhCccc--CCCeEEEeCCCC
Confidence 47888888888887765 2445678999999999999999998865432 223456666654
No 65
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=98.50 E-value=1.8e-08 Score=75.92 Aligned_cols=51 Identities=20% Similarity=0.182 Sum_probs=36.9
Q ss_pred CCcccccchHHHHHHHHHHhc------------cCCccEEEEEeCCCCcHHHHHHHHHhHHhh
Q 035585 23 KGYEAFKSRLSTLKSIQDALT------------DVNVNIVGVYGMGGIGKTTLVKEFARQASE 73 (183)
Q Consensus 23 ~~~~~~~gR~~~l~~l~~~l~------------~~~~~~v~i~G~~G~GKTtL~~~~~~~~~~ 73 (183)
.....++|.+...+.+.+.+. ......++|+|++|+|||+||+.++.....
T Consensus 8 ~~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~~~~ 70 (268)
T 2r62_A 8 VRFKDMAGNEEAKEEVVEIVDFLKYPERYANLGAKIPKGVLLVGPPGTGKTLLAKAVAGEAHV 70 (268)
T ss_dssp CCSTTSSSCTTTHHHHHHHHHHHHCHHHHHHHSCCCCSCCCCBCSSCSSHHHHHHHHHHHHTC
T ss_pred CCHHHhCCcHHHHHHHHHHHHHHHChHHHHHCCCCCCceEEEECCCCCcHHHHHHHHHHHhCC
Confidence 344567787777777666543 122345889999999999999999987643
No 66
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=98.50 E-value=1.6e-07 Score=69.61 Aligned_cols=39 Identities=28% Similarity=0.312 Sum_probs=27.7
Q ss_pred CccEEEEEeCCCCcHHHHHHHHHhHHh-hhhcccceEEEEec
Q 035585 46 NVNIVGVYGMGGIGKTTLVKEFARQAS-EEKLFDQVVFSEVS 86 (183)
Q Consensus 46 ~~~~v~i~G~~G~GKTtL~~~~~~~~~-~~~~~~~~~~~~~~ 86 (183)
+..+++|.|++|+|||||++.++.... .. ...++|+...
T Consensus 29 ~G~~~~l~GpnGsGKSTLl~~i~~~~~~~~--~~~~~~~~~~ 68 (251)
T 2ehv_A 29 EGTTVLLTGGTGTGKTTFAAQFIYKGAEEY--GEPGVFVTLE 68 (251)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHHHHHHHH--CCCEEEEESS
T ss_pred CCcEEEEEeCCCCCHHHHHHHHHHHHHHhC--CCeEEEEEcc
Confidence 457999999999999999999985433 22 2345555443
No 67
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=98.48 E-value=2.1e-07 Score=71.15 Aligned_cols=46 Identities=22% Similarity=0.353 Sum_probs=37.9
Q ss_pred cccchHHHHHHHHHHhcc--------------CCccEEEEEeCCCCcHHHHHHHHHhHHh
Q 035585 27 AFKSRLSTLKSIQDALTD--------------VNVNIVGVYGMGGIGKTTLVKEFARQAS 72 (183)
Q Consensus 27 ~~~gR~~~l~~l~~~l~~--------------~~~~~v~i~G~~G~GKTtL~~~~~~~~~ 72 (183)
.++|++.....+...+.. .....++++|++|+|||++|+.+++.+.
T Consensus 16 ~i~G~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~l~ 75 (310)
T 1ofh_A 16 HIIGQADAKRAVAIALRNRWRRMQLQEPLRHEVTPKNILMIGPTGVGKTEIARRLAKLAN 75 (310)
T ss_dssp TCCSCHHHHHHHHHHHHHHHHTTSSCHHHHHHCCCCCEEEECCTTSSHHHHHHHHHHHHT
T ss_pred hcCChHHHHHHHHHHHHHHHhhhhhcccccccCCCceEEEECCCCCCHHHHHHHHHHHhC
Confidence 578999998888876643 2456799999999999999999998763
No 68
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=98.47 E-value=2.4e-07 Score=70.91 Aligned_cols=28 Identities=25% Similarity=0.325 Sum_probs=24.4
Q ss_pred CCccEEEEEeCCCCcHHHHHHHHHhHHh
Q 035585 45 VNVNIVGVYGMGGIGKTTLVKEFARQAS 72 (183)
Q Consensus 45 ~~~~~v~i~G~~G~GKTtL~~~~~~~~~ 72 (183)
..+..++|+||+|+|||+||+.+++.+.
T Consensus 34 ~~p~~lLl~GppGtGKT~la~aiA~~l~ 61 (293)
T 3t15_A 34 KVPLILGIWGGKGQGKSFQCELVFRKMG 61 (293)
T ss_dssp CCCSEEEEEECTTSCHHHHHHHHHHHHT
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhC
Confidence 3456899999999999999999999874
No 69
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=98.44 E-value=7.3e-07 Score=65.42 Aligned_cols=63 Identities=13% Similarity=0.213 Sum_probs=45.8
Q ss_pred CCcccccch---HHHHHHHHHHhccCCccEEEEEeCCCCcHHHHHHHHHhHHhhhhcccceEEEEecC
Q 035585 23 KGYEAFKSR---LSTLKSIQDALTDVNVNIVGVYGMGGIGKTTLVKEFARQASEEKLFDQVVFSEVSQ 87 (183)
Q Consensus 23 ~~~~~~~gR---~~~l~~l~~~l~~~~~~~v~i~G~~G~GKTtL~~~~~~~~~~~~~~~~~~~~~~~~ 87 (183)
.....|+++ +..+..+..+......+.++|+|++|+|||++++.++...... ...+.|+++..
T Consensus 25 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ll~G~~G~GKT~la~~l~~~~~~~--~~~~~~~~~~~ 90 (242)
T 3bos_A 25 ETFTSYYPAAGNDELIGALKSAASGDGVQAIYLWGPVKSGRTHLIHAACARANEL--ERRSFYIPLGI 90 (242)
T ss_dssp CSTTTSCC--CCHHHHHHHHHHHHTCSCSEEEEECSTTSSHHHHHHHHHHHHHHT--TCCEEEEEGGG
T ss_pred CChhhccCCCCCHHHHHHHHHHHhCCCCCeEEEECCCCCCHHHHHHHHHHHHHHc--CCeEEEEEHHH
Confidence 445567763 3666777776665567899999999999999999999988764 33466666643
No 70
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=98.43 E-value=4.1e-07 Score=68.04 Aligned_cols=51 Identities=20% Similarity=0.201 Sum_probs=37.1
Q ss_pred CCCcccccchHHHHHHHHHHhc---c---------CCccEEEEEeCCCCcHHHHHHHHHhHHh
Q 035585 22 NKGYEAFKSRLSTLKSIQDALT---D---------VNVNIVGVYGMGGIGKTTLVKEFARQAS 72 (183)
Q Consensus 22 ~~~~~~~~gR~~~l~~l~~~l~---~---------~~~~~v~i~G~~G~GKTtL~~~~~~~~~ 72 (183)
+.....++|.+...+.+.+... . ..+..++|+|++|+|||++++.++....
T Consensus 8 ~~~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~~~ 70 (257)
T 1lv7_A 8 KTTFADVAGCDEAKEEVAELVEYLREPSRFQKLGGKIPKGVLMVGPPGTGKTLLAKAIAGEAK 70 (257)
T ss_dssp CCCGGGSCSCHHHHHHTHHHHHHHHCGGGC-----CCCCEEEEECCTTSCHHHHHHHHHHHHT
T ss_pred CCCHHHhcCcHHHHHHHHHHHHHHhCHHHHHHcCCCCCCeEEEECcCCCCHHHHHHHHHHHcC
Confidence 4445667888777776665432 1 1245689999999999999999998754
No 71
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=98.42 E-value=1.3e-06 Score=72.37 Aligned_cols=46 Identities=24% Similarity=0.322 Sum_probs=32.8
Q ss_pred ccchHHHHHHHHHHhc------cCCccEEEEEeCCCCcHHHHHHHHHhHHhh
Q 035585 28 FKSRLSTLKSIQDALT------DVNVNIVGVYGMGGIGKTTLVKEFARQASE 73 (183)
Q Consensus 28 ~~gR~~~l~~l~~~l~------~~~~~~v~i~G~~G~GKTtL~~~~~~~~~~ 73 (183)
++|-+.....+.+.+. ..+...++|+||+|+|||||++.++..+..
T Consensus 83 i~G~~~vk~~i~~~~~l~~~~~~~~g~~vll~Gp~GtGKTtlar~ia~~l~~ 134 (543)
T 3m6a_A 83 HHGLEKVKERILEYLAVQKLTKSLKGPILCLAGPPGVGKTSLAKSIAKSLGR 134 (543)
T ss_dssp CSSCHHHHHHHHHHHHHHHHSSSCCSCEEEEESSSSSSHHHHHHHHHHHHTC
T ss_pred hccHHHHHHHHHHHHHHHHhcccCCCCEEEEECCCCCCHHHHHHHHHHhcCC
Confidence 4555555555544322 335678999999999999999999988743
No 72
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=98.42 E-value=4.7e-07 Score=73.43 Aligned_cols=96 Identities=11% Similarity=0.036 Sum_probs=59.5
Q ss_pred CcccccchHHHHHHHHHHhc---c--CCccEEEEEeCCCCcHHHHHHHHHhHHhhhhcccceEEEEecCCcCHHHHHHHH
Q 035585 24 GYEAFKSRLSTLKSIQDALT---D--VNVNIVGVYGMGGIGKTTLVKEFARQASEEKLFDQVVFSEVSQTPDIKKIHGEI 98 (183)
Q Consensus 24 ~~~~~~gR~~~l~~l~~~l~---~--~~~~~v~i~G~~G~GKTtL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 98 (183)
....++|.+...+.+..++. . .+++.++++||+|+|||++|+.++..+... ...+.++++....
T Consensus 35 ~~~~iiG~~~~~~~l~~~~~~~~~~~~~~~~iLl~GppGtGKT~la~ala~~l~~~---~~~~~~~~~~~~~-------- 103 (456)
T 2c9o_A 35 AASGLVGQENAREACGVIVELIKSKKMAGRAVLLAGPPGTGKTALALAIAQELGSK---VPFCPMVGSEVYS-------- 103 (456)
T ss_dssp EETTEESCHHHHHHHHHHHHHHHTTCCTTCEEEEECCTTSSHHHHHHHHHHHHCTT---SCEEEEEGGGGCC--------
T ss_pred chhhccCHHHHHHHHHHHHHHHHhCCCCCCeEEEECCCcCCHHHHHHHHHHHhCCC---ceEEEEeHHHHHH--------
Confidence 34678999988776655443 2 234689999999999999999999987542 1223334332211
Q ss_pred HHHhCCCchhHHHHHHHHHHHHHH---hcCCeEEEEEeCCCCc
Q 035585 99 AEKLGLEFSEEAESRRASRLYERL---KKEKMILVILDNIWKY 138 (183)
Q Consensus 99 ~~~l~~~~~~~~~~~~~~~~~~~~---~~~~~~llvlD~~~~~ 138 (183)
...... +.+...+... ....+.+|+|||++..
T Consensus 104 ------~~~~~~--~~~~~~f~~a~~~~~~~~~il~iDEid~l 138 (456)
T 2c9o_A 104 ------TEIKKT--EVLMENFRRAIGLRIKETKEVYEGEVTEL 138 (456)
T ss_dssp ------SSSCHH--HHHHHHHHHTEEEEEEEEEEEEEEEEEEE
T ss_pred ------Hhhhhh--HHHHHHHHHHHhhhhcCCcEEEEechhhc
Confidence 111111 1133444443 3467889999999755
No 73
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=98.40 E-value=2.4e-06 Score=69.84 Aligned_cols=96 Identities=18% Similarity=0.285 Sum_probs=61.5
Q ss_pred CCcccccchHHHHHHHHHHhc-------------cCCccEEEEEeCCCCcHHHHHHHHHhHHhhhhcccceEEEEecCCc
Q 035585 23 KGYEAFKSRLSTLKSIQDALT-------------DVNVNIVGVYGMGGIGKTTLVKEFARQASEEKLFDQVVFSEVSQTP 89 (183)
Q Consensus 23 ~~~~~~~gR~~~l~~l~~~l~-------------~~~~~~v~i~G~~G~GKTtL~~~~~~~~~~~~~~~~~~~~~~~~~~ 89 (183)
.....+.|....++.|.+++. ......++|+|++|+|||++|+.+++.... ..++++++.
T Consensus 201 ~~~~~i~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLL~GppGtGKT~lAraia~~~~~-----~fv~vn~~~-- 273 (489)
T 3hu3_A 201 VGYDDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANETGA-----FFFLINGPE-- 273 (489)
T ss_dssp CCGGGCCSCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCCEEEEECSTTSSHHHHHHHHHHHCSS-----EEEEEEHHH--
T ss_pred CCHHHcCCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCcEEEECcCCCCHHHHHHHHHHHhCC-----CEEEEEchH--
Confidence 345568999999999988764 244567999999999999999999876522 234444321
Q ss_pred CHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHHhcCCeEEEEEeCCCCc
Q 035585 90 DIKKIHGEIAEKLGLEFSEEAESRRASRLYERLKKEKMILVILDNIWKY 138 (183)
Q Consensus 90 ~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~llvlD~~~~~ 138 (183)
+...+. . ........++.......+.+|+|||++.+
T Consensus 274 --------l~~~~~----g-~~~~~~~~~f~~A~~~~p~iLfLDEId~l 309 (489)
T 3hu3_A 274 --------IMSKLA----G-ESESNLRKAFEEAEKNAPAIIFIDELDAI 309 (489)
T ss_dssp --------HHTSCT----T-HHHHHHHHHHHHHHHTCSEEEEEESHHHH
T ss_pred --------hhhhhc----c-hhHHHHHHHHHHHHhcCCcEEEecchhhh
Confidence 111111 1 11122334444444477889999999633
No 74
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=98.38 E-value=2.3e-07 Score=80.69 Aligned_cols=61 Identities=16% Similarity=0.285 Sum_probs=43.8
Q ss_pred ccccchHHHHHHHHHHhccC---------CccEEEEEeCCCCcHHHHHHHHHhHHhhhhcccceEEEEecCC
Q 035585 26 EAFKSRLSTLKSIQDALTDV---------NVNIVGVYGMGGIGKTTLVKEFARQASEEKLFDQVVFSEVSQT 88 (183)
Q Consensus 26 ~~~~gR~~~l~~l~~~l~~~---------~~~~v~i~G~~G~GKTtL~~~~~~~~~~~~~~~~~~~~~~~~~ 88 (183)
..++|....+..+...+... +...++++|++|+|||++|+.++...... ....+.++++.-
T Consensus 558 ~~viG~~~a~~~l~~~i~~~~~g~~~~~~p~~~vLl~Gp~GtGKT~lA~~la~~~~~~--~~~~i~i~~~~~ 627 (854)
T 1qvr_A 558 KRVVGQDEAIRAVADAIRRARAGLKDPNRPIGSFLFLGPTGVGKTELAKTLAATLFDT--EEAMIRIDMTEY 627 (854)
T ss_dssp HHSCSCHHHHHHHHHHHHHHGGGCSCSSSCSEEEEEBSCSSSSHHHHHHHHHHHHHSS--GGGEEEECTTTC
T ss_pred cccCCcHHHHHHHHHHHHHHhcccCCCCCCceEEEEECCCCCCHHHHHHHHHHHhcCC--CCcEEEEechhc
Confidence 35789998888887776521 12479999999999999999999987543 123455665543
No 75
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=98.36 E-value=3e-06 Score=62.56 Aligned_cols=28 Identities=25% Similarity=0.354 Sum_probs=24.0
Q ss_pred CccEEEEEeCCCCcHHHHHHHHHhHHhh
Q 035585 46 NVNIVGVYGMGGIGKTTLVKEFARQASE 73 (183)
Q Consensus 46 ~~~~v~i~G~~G~GKTtL~~~~~~~~~~ 73 (183)
+..+++|+|++|+|||||++.+...+..
T Consensus 33 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p 60 (229)
T 2pze_A 33 RGQLLAVAGSTGAGKTSLLMMIMGELEP 60 (229)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHTTSSCC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCcC
Confidence 4468999999999999999999877653
No 76
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=98.35 E-value=1e-06 Score=62.06 Aligned_cols=22 Identities=32% Similarity=0.579 Sum_probs=19.4
Q ss_pred CccEEEEEeCCCCcHHHHHHHH
Q 035585 46 NVNIVGVYGMGGIGKTTLVKEF 67 (183)
Q Consensus 46 ~~~~v~i~G~~G~GKTtL~~~~ 67 (183)
+..+++|+|++|+|||||++.+
T Consensus 8 ~gei~~l~G~nGsGKSTl~~~~ 29 (171)
T 4gp7_A 8 ELSLVVLIGSSGSGKSTFAKKH 29 (171)
T ss_dssp SSEEEEEECCTTSCHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHH
Confidence 4578999999999999999964
No 77
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=98.34 E-value=9.9e-07 Score=60.82 Aligned_cols=40 Identities=23% Similarity=0.396 Sum_probs=30.7
Q ss_pred CccEEEEEeCCCCcHHHHHHHHHhHHhhhhcccceEEEEecC
Q 035585 46 NVNIVGVYGMGGIGKTTLVKEFARQASEEKLFDQVVFSEVSQ 87 (183)
Q Consensus 46 ~~~~v~i~G~~G~GKTtL~~~~~~~~~~~~~~~~~~~~~~~~ 87 (183)
+...++|+|++|+|||||++.++...... -..++|++...
T Consensus 35 ~g~~~~l~G~~G~GKTtL~~~i~~~~~~~--g~~~~~~~~~~ 74 (149)
T 2kjq_A 35 HGQFIYVWGEEGAGKSHLLQAWVAQALEA--GKNAAYIDAAS 74 (149)
T ss_dssp CCSEEEEESSSTTTTCHHHHHHHHHHHTT--TCCEEEEETTT
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHHhc--CCcEEEEcHHH
Confidence 56789999999999999999999987653 12256665543
No 78
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=98.33 E-value=2.7e-07 Score=79.26 Aligned_cols=60 Identities=15% Similarity=0.230 Sum_probs=43.5
Q ss_pred ccccchHHHHHHHHHHhcc---------CCccEEEEEeCCCCcHHHHHHHHHhHHhhhhcccceEEEEecC
Q 035585 26 EAFKSRLSTLKSIQDALTD---------VNVNIVGVYGMGGIGKTTLVKEFARQASEEKLFDQVVFSEVSQ 87 (183)
Q Consensus 26 ~~~~gR~~~l~~l~~~l~~---------~~~~~v~i~G~~G~GKTtL~~~~~~~~~~~~~~~~~~~~~~~~ 87 (183)
..++|....+..+...+.. .+...++++|++|+|||++|+.+++.+... ....+.++++.
T Consensus 491 ~~viGq~~a~~~l~~~i~~~~~~~~~~~~p~~~~Ll~Gp~GtGKT~lA~ala~~l~~~--~~~~i~i~~s~ 559 (758)
T 3pxi_A 491 SRVIGQDEAVVAVAKAVRRARAGLKDPKRPIGSFIFLGPTGVGKTELARALAESIFGD--EESMIRIDMSE 559 (758)
T ss_dssp TTSCSCHHHHHHHHHHHHHHTTTCSCTTSCSEEEEEESCTTSSHHHHHHHHHHHHHSC--TTCEEEEEGGG
T ss_pred CcCcChHHHHHHHHHHHHHHHcccCCCCCCceEEEEECCCCCCHHHHHHHHHHHhcCC--CcceEEEechh
Confidence 3578888888888777651 111269999999999999999999987432 23456667654
No 79
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=98.33 E-value=9.6e-06 Score=59.67 Aligned_cols=92 Identities=16% Similarity=0.189 Sum_probs=53.9
Q ss_pred CccEEEEEeCCCCcHHHHHHHHHhHHhhhh----cccceEEEEecCCcCHHHHHHHHHHHhCCCch-------------h
Q 035585 46 NVNIVGVYGMGGIGKTTLVKEFARQASEEK----LFDQVVFSEVSQTPDIKKIHGEIAEKLGLEFS-------------E 108 (183)
Q Consensus 46 ~~~~v~i~G~~G~GKTtL~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~-------------~ 108 (183)
+..++.|+|++|+|||||++.++....... ....++|++.........+ ..++..++.... .
T Consensus 23 ~G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~g~~~~~~~~i~~~~~~~~~~~-~~~~~~~g~~~~~~~~~~~~~~~~~~ 101 (243)
T 1n0w_A 23 TGSITEMFGEFRTGKTQICHTLAVTCQLPIDRGGGEGKAMYIDTEGTFRPERL-LAVAERYGLSGSDVLDNVAYARAFNT 101 (243)
T ss_dssp TTSEEEEECCTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSSCCCHHHH-HHHHHHTTCCHHHHHHTEEEEECCSH
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHhCchhcCCCCCeEEEEECCCCcCHHHH-HHHHHHcCCCHHHHhhCeEEEecCCH
Confidence 447899999999999999999988532211 1245788777664333222 233333432210 1
Q ss_pred HHHHHHHHHHHHHHhcCCeEEEEEeCCCCc
Q 035585 109 EAESRRASRLYERLKKEKMILVILDNIWKY 138 (183)
Q Consensus 109 ~~~~~~~~~~~~~~~~~~~~llvlD~~~~~ 138 (183)
.........+...+...+.-+||||++...
T Consensus 102 ~~~~~~~~~~~~~~~~~~~~lliiD~~~~~ 131 (243)
T 1n0w_A 102 DHQTQLLYQASAMMVESRYALLIVDSATAL 131 (243)
T ss_dssp HHHHHHHHHHHHHHHHSCEEEEEEETSSGG
T ss_pred HHHHHHHHHHHHHHhcCCceEEEEeCchHH
Confidence 111112233444444468899999998755
No 80
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=98.31 E-value=8e-07 Score=76.44 Aligned_cols=74 Identities=15% Similarity=0.252 Sum_probs=49.0
Q ss_pred CCccEEEEEeCCCCcHHHHHHHHHhHHhhhhcccceEEEEecCCcCHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHHhc
Q 035585 45 VNVNIVGVYGMGGIGKTTLVKEFARQASEEKLFDQVVFSEVSQTPDIKKIHGEIAEKLGLEFSEEAESRRASRLYERLKK 124 (183)
Q Consensus 45 ~~~~~v~i~G~~G~GKTtL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~ 124 (183)
..++-++++||+|+|||+||+.+++..... .++++++. +.. .... .....+..++.....
T Consensus 236 ~~p~GILL~GPPGTGKT~LAraiA~elg~~-----~~~v~~~~----------l~s----k~~g-ese~~lr~lF~~A~~ 295 (806)
T 3cf2_A 236 KPPRGILLYGPPGTGKTLIARAVANETGAF-----FFLINGPE----------IMS----KLAG-ESESNLRKAFEEAEK 295 (806)
T ss_dssp CCCCEEEEECCTTSCHHHHHHHHHTTTTCE-----EEEEEHHH----------HHS----SCTT-HHHHHHHHHHHHHTT
T ss_pred CCCCeEEEECCCCCCHHHHHHHHHHHhCCe-----EEEEEhHH----------hhc----ccch-HHHHHHHHHHHHHHH
Confidence 356789999999999999999999876432 33433321 111 1111 223345566666666
Q ss_pred CCeEEEEEeCCCCc
Q 035585 125 EKMILVILDNIWKY 138 (183)
Q Consensus 125 ~~~~llvlD~~~~~ 138 (183)
..+.+|+|||+|..
T Consensus 296 ~~PsIIfIDEiDal 309 (806)
T 3cf2_A 296 NAPAIIFIDELDAI 309 (806)
T ss_dssp SCSEEEEEESGGGT
T ss_pred cCCeEEEEehhccc
Confidence 88999999999855
No 81
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=98.31 E-value=1e-05 Score=58.57 Aligned_cols=41 Identities=22% Similarity=0.120 Sum_probs=31.2
Q ss_pred CccEEEEEeCCCCcHHHHHHHHHhHHhhhhcccceEEEEecCCcCH
Q 035585 46 NVNIVGVYGMGGIGKTTLVKEFARQASEEKLFDQVVFSEVSQTPDI 91 (183)
Q Consensus 46 ~~~~v~i~G~~G~GKTtL~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 91 (183)
+..+++|+|++|+|||||+..++. . ....++|+........
T Consensus 19 ~G~~~~i~G~~GsGKTtl~~~l~~---~--~~~~v~~i~~~~~~~~ 59 (220)
T 2cvh_A 19 PGVLTQVYGPYASGKTTLALQTGL---L--SGKKVAYVDTEGGFSP 59 (220)
T ss_dssp TTSEEEEECSTTSSHHHHHHHHHH---H--HCSEEEEEESSCCCCH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHH---H--cCCcEEEEECCCCCCH
Confidence 446899999999999999999988 2 1346788777653343
No 82
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=98.30 E-value=1.4e-06 Score=64.74 Aligned_cols=28 Identities=25% Similarity=0.426 Sum_probs=24.0
Q ss_pred CccEEEEEeCCCCcHHHHHHHHHhHHhh
Q 035585 46 NVNIVGVYGMGGIGKTTLVKEFARQASE 73 (183)
Q Consensus 46 ~~~~v~i~G~~G~GKTtL~~~~~~~~~~ 73 (183)
+..+++|+|++|+|||||++.+...+..
T Consensus 30 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p 57 (237)
T 2cbz_A 30 EGALVAVVGQVGCGKSSLLSALLAEMDK 57 (237)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTTCSEE
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCCCC
Confidence 4468999999999999999999876643
No 83
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=98.28 E-value=2.5e-06 Score=64.29 Aligned_cols=25 Identities=32% Similarity=0.381 Sum_probs=22.5
Q ss_pred ccEEEEEeCCCCcHHHHHHHHHhHH
Q 035585 47 VNIVGVYGMGGIGKTTLVKEFARQA 71 (183)
Q Consensus 47 ~~~v~i~G~~G~GKTtL~~~~~~~~ 71 (183)
...++|.|++|+|||||++.++...
T Consensus 30 Ge~~~i~G~NGsGKSTLlk~l~Gl~ 54 (263)
T 2pjz_A 30 GEKVIILGPNGSGKTTLLRAISGLL 54 (263)
T ss_dssp SSEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CEEEEEECCCCCCHHHHHHHHhCCC
Confidence 5689999999999999999998765
No 84
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=98.28 E-value=6.3e-06 Score=62.42 Aligned_cols=71 Identities=18% Similarity=0.270 Sum_probs=42.2
Q ss_pred cEEEEEeCCCCcHHHHHHHHHhHHhhhhcccceEEEEecCCcCHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHHhcCCe
Q 035585 48 NIVGVYGMGGIGKTTLVKEFARQASEEKLFDQVVFSEVSQTPDIKKIHGEIAEKLGLEFSEEAESRRASRLYERLKKEKM 127 (183)
Q Consensus 48 ~~v~i~G~~G~GKTtL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 127 (183)
+-++|+|++|+|||||++.++..... ..++++...-... ... .....+..+.+......+
T Consensus 45 ~GvlL~Gp~GtGKTtLakala~~~~~-----~~i~i~g~~l~~~--------------~~~-~~~~~i~~vf~~a~~~~p 104 (274)
T 2x8a_A 45 AGVLLAGPPGCGKTLLAKAVANESGL-----NFISVKGPELLNM--------------YVG-ESERAVRQVFQRAKNSAP 104 (274)
T ss_dssp SEEEEESSTTSCHHHHHHHHHHHTTC-----EEEEEETTTTCSS--------------TTH-HHHHHHHHHHHHHHHTCS
T ss_pred CeEEEECCCCCcHHHHHHHHHHHcCC-----CEEEEEcHHHHhh--------------hhh-HHHHHHHHHHHHHHhcCC
Confidence 34999999999999999999886543 2334433221110 000 111223334444333567
Q ss_pred EEEEEeCCCCc
Q 035585 128 ILVILDNIWKY 138 (183)
Q Consensus 128 ~llvlD~~~~~ 138 (183)
.++++||++..
T Consensus 105 ~i~~~Deid~~ 115 (274)
T 2x8a_A 105 CVIFFDEVDAL 115 (274)
T ss_dssp EEEEEETCTTT
T ss_pred CeEeeehhhhh
Confidence 89999999754
No 85
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=98.28 E-value=8.8e-06 Score=63.85 Aligned_cols=86 Identities=20% Similarity=0.277 Sum_probs=53.7
Q ss_pred CccEEEEEeCCCCcHHHHHHHHHhHHhhhhcccceEEEEecCCcCHHHHHHHHHHHhCCCchh------HHHHHHHHHHH
Q 035585 46 NVNIVGVYGMGGIGKTTLVKEFARQASEEKLFDQVVFSEVSQTPDIKKIHGEIAEKLGLEFSE------EAESRRASRLY 119 (183)
Q Consensus 46 ~~~~v~i~G~~G~GKTtL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~------~~~~~~~~~~~ 119 (183)
+..++.|+|++|+|||||+.+++...... -..++|++........ .+++++..... .........+.
T Consensus 60 ~G~i~~I~GppGsGKSTLal~la~~~~~~--gg~VlyId~E~s~~~~-----ra~rlgv~~~~l~i~~~~~~e~~l~~~~ 132 (356)
T 3hr8_A 60 RGRIVEIFGQESSGKTTLALHAIAEAQKM--GGVAAFIDAEHALDPV-----YAKNLGVDLKSLLISQPDHGEQALEIVD 132 (356)
T ss_dssp TTEEEEEEESTTSSHHHHHHHHHHHHHHT--TCCEEEEESSCCCCHH-----HHHHHTCCGGGCEEECCSSHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHhc--CCeEEEEecccccchH-----HHHHcCCchhhhhhhhccCHHHHHHHHH
Confidence 44789999999999999999999887653 3457888776554432 34444433211 11222223333
Q ss_pred HHHhcCCeEEEEEeCCCCc
Q 035585 120 ERLKKEKMILVILDNIWKY 138 (183)
Q Consensus 120 ~~~~~~~~~llvlD~~~~~ 138 (183)
..+.....-++|+|.+...
T Consensus 133 ~l~~~~~~dlvVIDSi~~l 151 (356)
T 3hr8_A 133 ELVRSGVVDLIVVDSVAAL 151 (356)
T ss_dssp HHHHTSCCSEEEEECTTTC
T ss_pred HHhhhcCCCeEEehHhhhh
Confidence 3333456779999997654
No 86
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=98.27 E-value=2e-06 Score=66.22 Aligned_cols=54 Identities=22% Similarity=0.304 Sum_probs=37.5
Q ss_pred hHHHHHHHHHHhccC---CccEEEEEeCCCCcHHHHHHHHHhHHh-hhhcccceEEEEec
Q 035585 31 RLSTLKSIQDALTDV---NVNIVGVYGMGGIGKTTLVKEFARQAS-EEKLFDQVVFSEVS 86 (183)
Q Consensus 31 R~~~l~~l~~~l~~~---~~~~v~i~G~~G~GKTtL~~~~~~~~~-~~~~~~~~~~~~~~ 86 (183)
+...+..+.+++.+. ....+.|+|++|+|||+|+..+++... .. ...+.+++++
T Consensus 133 ~~~~~~~~~~~i~~~~~~~~~~lll~G~~GtGKT~La~aia~~~~~~~--g~~v~~~~~~ 190 (308)
T 2qgz_A 133 RMEAFSAILDFVEQYPSAEQKGLYLYGDMGIGKSYLLAAMAHELSEKK--GVSTTLLHFP 190 (308)
T ss_dssp HHHHHHHHHHHHHHCSCSSCCEEEEECSTTSSHHHHHHHHHHHHHHHS--CCCEEEEEHH
T ss_pred HHHHHHHHHHHHHhccccCCceEEEECCCCCCHHHHHHHHHHHHHHhc--CCcEEEEEHH
Confidence 444555555555531 257899999999999999999999887 54 2345565543
No 87
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=98.26 E-value=6.6e-07 Score=67.09 Aligned_cols=27 Identities=30% Similarity=0.434 Sum_probs=23.4
Q ss_pred CccEEEEEeCCCCcHHHHHHHHHhHHh
Q 035585 46 NVNIVGVYGMGGIGKTTLVKEFARQAS 72 (183)
Q Consensus 46 ~~~~v~i~G~~G~GKTtL~~~~~~~~~ 72 (183)
+..+++|.|++|+|||||++.+...+.
T Consensus 30 ~Ge~~~l~G~nGsGKSTLl~~l~Gl~~ 56 (253)
T 2nq2_C 30 KGDILAVLGQNGCGKSTLLDLLLGIHR 56 (253)
T ss_dssp TTCEEEEECCSSSSHHHHHHHHTTSSC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 446899999999999999999987654
No 88
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=98.25 E-value=3.5e-06 Score=63.24 Aligned_cols=26 Identities=31% Similarity=0.456 Sum_probs=22.7
Q ss_pred CccEEEEEeCCCCcHHHHHHHHHhHH
Q 035585 46 NVNIVGVYGMGGIGKTTLVKEFARQA 71 (183)
Q Consensus 46 ~~~~v~i~G~~G~GKTtL~~~~~~~~ 71 (183)
+..+++|.|++|+|||||++.+....
T Consensus 40 ~Gei~~l~G~NGsGKSTLlk~l~Gl~ 65 (256)
T 1vpl_A 40 EGEIFGLIGPNGAGKTTTLRIISTLI 65 (256)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCcEEEEECCCCCCHHHHHHHHhcCC
Confidence 45689999999999999999997654
No 89
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=98.24 E-value=1.4e-06 Score=65.71 Aligned_cols=26 Identities=27% Similarity=0.461 Sum_probs=22.5
Q ss_pred CccEEEEEeCCCCcHHHHHHHHHhHH
Q 035585 46 NVNIVGVYGMGGIGKTTLVKEFARQA 71 (183)
Q Consensus 46 ~~~~v~i~G~~G~GKTtL~~~~~~~~ 71 (183)
+..+++|+|++|+|||||++.+...+
T Consensus 36 ~Ge~~~liG~nGsGKSTLl~~l~Gl~ 61 (266)
T 4g1u_C 36 SGEMVAIIGPNGAGKSTLLRLLTGYL 61 (266)
T ss_dssp TTCEEEEECCTTSCHHHHHHHHTSSS
T ss_pred CCCEEEEECCCCCcHHHHHHHHhcCC
Confidence 45789999999999999999997544
No 90
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=98.24 E-value=2.7e-06 Score=64.18 Aligned_cols=26 Identities=31% Similarity=0.279 Sum_probs=22.5
Q ss_pred CccEEEEEeCCCCcHHHHHHHHHhHH
Q 035585 46 NVNIVGVYGMGGIGKTTLVKEFARQA 71 (183)
Q Consensus 46 ~~~~v~i~G~~G~GKTtL~~~~~~~~ 71 (183)
+..+++|+|++|+|||||++.+....
T Consensus 32 ~Ge~~~liG~nGsGKSTLl~~i~Gl~ 57 (266)
T 2yz2_A 32 EGECLLVAGNTGSGKSTLLQIVAGLI 57 (266)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCcHHHHHHHHhCCC
Confidence 44689999999999999999997654
No 91
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=98.23 E-value=6.7e-07 Score=67.87 Aligned_cols=26 Identities=27% Similarity=0.523 Sum_probs=22.4
Q ss_pred CccEEEEEeCCCCcHHHHHHHHHhHH
Q 035585 46 NVNIVGVYGMGGIGKTTLVKEFARQA 71 (183)
Q Consensus 46 ~~~~v~i~G~~G~GKTtL~~~~~~~~ 71 (183)
+..+++|+|++|+|||||++.+...+
T Consensus 33 ~Ge~~~iiGpnGsGKSTLl~~l~Gl~ 58 (275)
T 3gfo_A 33 RGEVTAILGGNGVGKSTLFQNFNGIL 58 (275)
T ss_dssp TTSEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHHcCC
Confidence 44789999999999999999997544
No 92
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=98.22 E-value=2.6e-05 Score=56.81 Aligned_cols=92 Identities=23% Similarity=0.269 Sum_probs=51.6
Q ss_pred CccEEEEEeCCCCcHHHHHHHHHhHHhhhh----cccceEEEEecCCcCHHHHHHHHHHHhCCCch-------------h
Q 035585 46 NVNIVGVYGMGGIGKTTLVKEFARQASEEK----LFDQVVFSEVSQTPDIKKIHGEIAEKLGLEFS-------------E 108 (183)
Q Consensus 46 ~~~~v~i~G~~G~GKTtL~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~-------------~ 108 (183)
+..+++|+|++|+|||||++.++....... ....++|++........ -...+.+.+..... .
T Consensus 24 ~G~~~~l~G~nGsGKSTll~~l~g~~~~~~~~g~~~~~~i~~~~~~~~~~~-~i~~~~~~~~~~~~~~~~~~~~~~~~~~ 102 (231)
T 4a74_A 24 TQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTENTFRPE-RIREIAQNRGLDPDEVLKHIYVARAFNS 102 (231)
T ss_dssp SSEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSSCCCHH-HHHHHHHHTTSCHHHHHHTEEEEECCSH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCEEEEEECCCCCCHH-HHHHHHHHcCCCHHHHhhcEEEEecCCh
Confidence 347899999999999999999987543311 12346776655432222 22333333332211 0
Q ss_pred HHHHHHHHHHHHHHh-----cCCeEEEEEeCCCCc
Q 035585 109 EAESRRASRLYERLK-----KEKMILVILDNIWKY 138 (183)
Q Consensus 109 ~~~~~~~~~~~~~~~-----~~~~~llvlD~~~~~ 138 (183)
.........+...+. ..++-+|++|++...
T Consensus 103 ~~~~~~~~~~~~~~~~~~~~~~~~~llilDe~~~~ 137 (231)
T 4a74_A 103 NHQMLLVQQAEDKIKELLNTDRPVKLLIVDSLTSH 137 (231)
T ss_dssp HHHHHHHHHHHHHHHHHTTSSSCEEEEEEETSSHH
T ss_pred HHHHHHHHHHHHHHHHhcccCCceeEEEECChHHH
Confidence 111111223333333 468899999998754
No 93
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=98.22 E-value=1.7e-07 Score=69.03 Aligned_cols=113 Identities=12% Similarity=0.025 Sum_probs=62.4
Q ss_pred CCccEEEEEeCCCCcHHHHHHHHHhHHhhhhcccceEEEEecCCcCHHHHHHHHHHHhCCCchh---HHHHHHHHHHHHH
Q 035585 45 VNVNIVGVYGMGGIGKTTLVKEFARQASEEKLFDQVVFSEVSQTPDIKKIHGEIAEKLGLEFSE---EAESRRASRLYER 121 (183)
Q Consensus 45 ~~~~~v~i~G~~G~GKTtL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~---~~~~~~~~~~~~~ 121 (183)
.+..+++++|+.|+||||++..++.++... ...+++++...+.. ....+++.++...+. .........+.+.
T Consensus 10 ~~G~i~litG~mGsGKTT~ll~~~~r~~~~--g~kVli~~~~~d~r---~~~~i~srlG~~~~~~~~~~~~~i~~~i~~~ 84 (223)
T 2b8t_A 10 KIGWIEFITGPMFAGKTAELIRRLHRLEYA--DVKYLVFKPKIDTR---SIRNIQSRTGTSLPSVEVESAPEILNYIMSN 84 (223)
T ss_dssp -CCEEEEEECSTTSCHHHHHHHHHHHHHHT--TCCEEEEEECCCGG---GCSSCCCCCCCSSCCEEESSTHHHHHHHHST
T ss_pred CCcEEEEEECCCCCcHHHHHHHHHHHHHhc--CCEEEEEEeccCch---HHHHHHHhcCCCccccccCCHHHHHHHHHHH
Confidence 445789999999999999999999888765 23455554443321 112334444432221 1111111222222
Q ss_pred HhcCCeEEEEEeCCCCcc--cccccCcCCCCCCCCcEEEEEecChH
Q 035585 122 LKKEKMILVILDNIWKYL--DLETVGIPFGDDHRGCKLLLTARDCN 165 (183)
Q Consensus 122 ~~~~~~~llvlD~~~~~~--~~~~l~~~~~~~~~~~~iiitsr~~~ 165 (183)
+...+.-+|++||++... .++.+ ..+.+ .+..||++.++.+
T Consensus 85 ~~~~~~dvViIDEaQ~l~~~~ve~l-~~L~~--~gi~Vil~Gl~~d 127 (223)
T 2b8t_A 85 SFNDETKVIGIDEVQFFDDRICEVA-NILAE--NGFVVIISGLDKN 127 (223)
T ss_dssp TSCTTCCEEEECSGGGSCTHHHHHH-HHHHH--TTCEEEEECCSBC
T ss_pred hhCCCCCEEEEecCccCcHHHHHHH-HHHHh--CCCeEEEEecccc
Confidence 222346699999997542 22233 22222 2778999999543
No 94
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=98.22 E-value=7.3e-06 Score=61.05 Aligned_cols=51 Identities=18% Similarity=0.242 Sum_probs=34.1
Q ss_pred CCCcccccchHHHHHHHHHHhc---c---------CCccEEEEEeCCCCcHHHHHHHHHhHHh
Q 035585 22 NKGYEAFKSRLSTLKSIQDALT---D---------VNVNIVGVYGMGGIGKTTLVKEFARQAS 72 (183)
Q Consensus 22 ~~~~~~~~gR~~~l~~l~~~l~---~---------~~~~~v~i~G~~G~GKTtL~~~~~~~~~ 72 (183)
......++|.+.....+.+... . .-.+-++|+|++|+|||||++.++....
T Consensus 12 ~~~~~~i~g~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~g~ll~G~~G~GKTtl~~~i~~~~~ 74 (254)
T 1ixz_A 12 KVTFKDVAGAEEAKEELKEIVEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEAR 74 (254)
T ss_dssp SCCGGGCCSCHHHHHHHHHHHHHHHCHHHHHHTTCCCCSEEEEECCTTSSHHHHHHHHHHHTT
T ss_pred CCCHHHhCCcHHHHHHHHHHHHHHHCHHHHHHcCCCCCCeEEEECCCCCCHHHHHHHHHHHhC
Confidence 3344556776666555554322 1 1123489999999999999999998764
No 95
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=98.22 E-value=1.2e-06 Score=75.27 Aligned_cols=103 Identities=15% Similarity=0.138 Sum_probs=58.7
Q ss_pred ccccchHHHHHHHHHHhcc---------CCccEEEEEeCCCCcHHHHHHHHHhHHhhhhcccceEEEEecCCcCHHHHHH
Q 035585 26 EAFKSRLSTLKSIQDALTD---------VNVNIVGVYGMGGIGKTTLVKEFARQASEEKLFDQVVFSEVSQTPDIKKIHG 96 (183)
Q Consensus 26 ~~~~gR~~~l~~l~~~l~~---------~~~~~v~i~G~~G~GKTtL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 (183)
..++|.+..++.+...+.. .+...++++|++|+|||++|+.+++.+. ...+.++++......
T Consensus 458 ~~v~g~~~~~~~l~~~i~~~~~g~~~~~~p~~~~ll~G~~GtGKT~la~~la~~l~-----~~~~~i~~s~~~~~~---- 528 (758)
T 1r6b_X 458 MLVFGQDKAIEALTEAIKMARAGLGHEHKPVGSFLFAGPTGVGKTEVTVQLSKALG-----IELLRFDMSEYMERH---- 528 (758)
T ss_dssp TTSCSCHHHHHHHHHHHHHHHTTCSCTTSCSEEEEEECSTTSSHHHHHHHHHHHHT-----CEEEEEEGGGCSSSS----
T ss_pred hhccCHHHHHHHHHHHHHHHhcccCCCCCCceEEEEECCCCCcHHHHHHHHHHHhc-----CCEEEEechhhcchh----
Confidence 3577888888777776541 1224799999999999999999998873 224455655432210
Q ss_pred HHHHHhCCCchhHHHHHHHHHHHHHHhcCCeEEEEEeCCCCc
Q 035585 97 EIAEKLGLEFSEEAESRRASRLYERLKKEKMILVILDNIWKY 138 (183)
Q Consensus 97 ~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~llvlD~~~~~ 138 (183)
.+ ..+....+..........+...+.....-+|+|||++..
T Consensus 529 ~~-~~l~g~~~g~~g~~~~~~l~~~~~~~~~~vl~lDEi~~~ 569 (758)
T 1r6b_X 529 TV-SRLIGAPPGYVGFDQGGLLTDAVIKHPHAVLLLDEIEKA 569 (758)
T ss_dssp CC-SSSCCCCSCSHHHHHTTHHHHHHHHCSSEEEEEETGGGS
T ss_pred hH-hhhcCCCCCCcCccccchHHHHHHhCCCcEEEEeCcccc
Confidence 00 011111111111111112233344456789999999865
No 96
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=98.20 E-value=7.1e-07 Score=70.20 Aligned_cols=51 Identities=18% Similarity=0.249 Sum_probs=32.6
Q ss_pred cCCeEEEEEeCCCCcccc---cccCcCCCC--CCCCcEEEEEecChHHHhhcCCCC
Q 035585 124 KEKMILVILDNIWKYLDL---ETVGIPFGD--DHRGCKLLLTARDCNVLLNMSLCR 174 (183)
Q Consensus 124 ~~~~~llvlD~~~~~~~~---~~l~~~~~~--~~~~~~iiitsr~~~~~~~~~~~~ 174 (183)
..++-+|++||.....+. ..+...+.. ...|..||++||+.+++..+....
T Consensus 179 ~~~P~lLLlDEPTs~LD~~~~~~i~~lL~~l~~~~g~Tii~vTHdl~~~~~~aDrv 234 (366)
T 3tui_C 179 ASNPKVLLCDQATSALDPATTRSILELLKDINRRLGLTILLITHEMDVVKRICDCV 234 (366)
T ss_dssp TTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHSCCEEEEEESCHHHHHHHCSEE
T ss_pred hcCCCEEEEECCCccCCHHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHHhCCEE
Confidence 378889999998765431 111122211 123778999999999887655543
No 97
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=98.20 E-value=5.1e-06 Score=62.58 Aligned_cols=27 Identities=26% Similarity=0.365 Sum_probs=23.0
Q ss_pred CccEEEEEeCCCCcHHHHHHHHHhHHh
Q 035585 46 NVNIVGVYGMGGIGKTTLVKEFARQAS 72 (183)
Q Consensus 46 ~~~~v~i~G~~G~GKTtL~~~~~~~~~ 72 (183)
+..+++|+|++|+|||||++.+.....
T Consensus 49 ~Gei~~liG~NGsGKSTLlk~l~Gl~~ 75 (263)
T 2olj_A 49 EGEVVVVIGPSGSGKSTFLRCLNLLED 75 (263)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHTTSSC
T ss_pred CCCEEEEEcCCCCcHHHHHHHHHcCCC
Confidence 456899999999999999999976543
No 98
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=98.20 E-value=4.1e-06 Score=63.34 Aligned_cols=52 Identities=17% Similarity=0.240 Sum_probs=36.2
Q ss_pred cCCCcccccchHHHHHHHHHHhc---c---------CCccEEEEEeCCCCcHHHHHHHHHhHHh
Q 035585 21 SNKGYEAFKSRLSTLKSIQDALT---D---------VNVNIVGVYGMGGIGKTTLVKEFARQAS 72 (183)
Q Consensus 21 ~~~~~~~~~gR~~~l~~l~~~l~---~---------~~~~~v~i~G~~G~GKTtL~~~~~~~~~ 72 (183)
|......++|.+.....+.+... . .-.+-++|+|++|+|||||++.++....
T Consensus 35 ~~~~~~~i~g~~~~~~~l~~l~~~~~~~~~l~~~~~~~~~gvll~Gp~GtGKTtl~~~i~~~~~ 98 (278)
T 1iy2_A 35 PKVTFKDVAGAEEAKEELKEIVEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEAR 98 (278)
T ss_dssp CCCCGGGSSSCHHHHHHHHHHHHHHHCHHHHHHTTCCCCCEEEEECCTTSSHHHHHHHHHHHTT
T ss_pred CCCCHHHhCChHHHHHHHHHHHHHHHCHHHHHHcCCCCCCeEEEECCCcChHHHHHHHHHHHcC
Confidence 44455667787776666655432 1 1123489999999999999999998764
No 99
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=98.19 E-value=2.1e-06 Score=63.17 Aligned_cols=26 Identities=27% Similarity=0.385 Sum_probs=22.3
Q ss_pred CccEEEEEeCCCCcHHHHHHHHHhHH
Q 035585 46 NVNIVGVYGMGGIGKTTLVKEFARQA 71 (183)
Q Consensus 46 ~~~~v~i~G~~G~GKTtL~~~~~~~~ 71 (183)
+..+++|+|++|+|||||++.+....
T Consensus 29 ~Ge~~~iiG~nGsGKSTLl~~l~Gl~ 54 (224)
T 2pcj_A 29 KGEFVSIIGASGSGKSTLLYILGLLD 54 (224)
T ss_dssp TTCEEEEEECTTSCHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 44689999999999999999997544
No 100
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=98.16 E-value=1.7e-05 Score=62.20 Aligned_cols=86 Identities=16% Similarity=0.257 Sum_probs=53.2
Q ss_pred CccEEEEEeCCCCcHHHHHHHHHhHHhhhhcccceEEEEecCCcCHHHHHHHHHHHhCCCchh------HHHHHHHHHHH
Q 035585 46 NVNIVGVYGMGGIGKTTLVKEFARQASEEKLFDQVVFSEVSQTPDIKKIHGEIAEKLGLEFSE------EAESRRASRLY 119 (183)
Q Consensus 46 ~~~~v~i~G~~G~GKTtL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~------~~~~~~~~~~~ 119 (183)
+..++.|+|++|+|||||+.+++...... -..++|++........ .+..++..... .........+.
T Consensus 60 ~G~iv~I~G~pGsGKTtLal~la~~~~~~--g~~vlyi~~E~~~~~~-----~a~~lG~~~~~l~i~~~~~~e~~l~~~~ 132 (349)
T 2zr9_A 60 RGRVIEIYGPESSGKTTVALHAVANAQAA--GGIAAFIDAEHALDPE-----YAKKLGVDTDSLLVSQPDTGEQALEIAD 132 (349)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHHHHT--TCCEEEEESSCCCCHH-----HHHHTTCCGGGCEEECCSSHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhC--CCeEEEEECCCCcCHH-----HHHHcCCCHHHeEEecCCCHHHHHHHHH
Confidence 45789999999999999999998776643 3458888877654432 23444432211 11122222222
Q ss_pred HHHhcCCeEEEEEeCCCCc
Q 035585 120 ERLKKEKMILVILDNIWKY 138 (183)
Q Consensus 120 ~~~~~~~~~llvlD~~~~~ 138 (183)
......+.-+||+|++...
T Consensus 133 ~l~~~~~~~lIVIDsl~~l 151 (349)
T 2zr9_A 133 MLVRSGALDIIVIDSVAAL 151 (349)
T ss_dssp HHHTTTCCSEEEEECGGGC
T ss_pred HHHhcCCCCEEEEcChHhh
Confidence 2233456789999998654
No 101
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=98.15 E-value=3.4e-06 Score=66.26 Aligned_cols=46 Identities=22% Similarity=0.218 Sum_probs=36.4
Q ss_pred cccchHHHHHHHHHHhc---------------cCCccEEEEEeCCCCcHHHHHHHHHhHHh
Q 035585 27 AFKSRLSTLKSIQDALT---------------DVNVNIVGVYGMGGIGKTTLVKEFARQAS 72 (183)
Q Consensus 27 ~~~gR~~~l~~l~~~l~---------------~~~~~~v~i~G~~G~GKTtL~~~~~~~~~ 72 (183)
.++|.+...+.+...+. ......++++|++|+|||++|+.++..+.
T Consensus 16 ~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~vll~GppGtGKT~la~~ia~~~~ 76 (363)
T 3hws_A 16 YVIGQEQAKKVLAVAVYNHYKRLRNGDTSNGVELGKSNILLIGPTGSGKTLLAETLARLLD 76 (363)
T ss_dssp HCCSCHHHHHHHHHHHHHHHHHHHTTSCSSSCCCCCCCEEEECCTTSSHHHHHHHHHHHTT
T ss_pred hccCHHHHHHHHHHHHHHHHhhhccccccccccCCCCeEEEECCCCCCHHHHHHHHHHHcC
Confidence 36788888888877662 11446799999999999999999998763
No 102
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=98.15 E-value=6.3e-06 Score=62.98 Aligned_cols=28 Identities=25% Similarity=0.354 Sum_probs=23.9
Q ss_pred CccEEEEEeCCCCcHHHHHHHHHhHHhh
Q 035585 46 NVNIVGVYGMGGIGKTTLVKEFARQASE 73 (183)
Q Consensus 46 ~~~~v~i~G~~G~GKTtL~~~~~~~~~~ 73 (183)
+..+++|+|++|+|||||++.+...+..
T Consensus 63 ~Ge~~~i~G~NGsGKSTLlk~l~Gl~~p 90 (290)
T 2bbs_A 63 RGQLLAVAGSTGAGKTSLLMMIMGELEP 90 (290)
T ss_dssp TTCEEEEEESTTSSHHHHHHHHTTSSCE
T ss_pred CCCEEEEECCCCCcHHHHHHHHhcCCCC
Confidence 4468999999999999999999876643
No 103
>3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4}
Probab=98.15 E-value=2e-05 Score=60.76 Aligned_cols=86 Identities=7% Similarity=0.082 Sum_probs=55.2
Q ss_pred cEEEEEeCCCCcHHHHHHHHHhHHhhhhcccceEEEEecCCcCHHHHHHHHHHHhCCCchh------HHHHHHHHHHHHH
Q 035585 48 NIVGVYGMGGIGKTTLVKEFARQASEEKLFDQVVFSEVSQTPDIKKIHGEIAEKLGLEFSE------EAESRRASRLYER 121 (183)
Q Consensus 48 ~~v~i~G~~G~GKTtL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~------~~~~~~~~~~~~~ 121 (183)
.++.|+|++|+|||||+.+++........-..++|++........ .+++++..... .........+.+.
T Consensus 29 GiteI~G~pGsGKTtL~Lq~~~~~~~~g~g~~vlyId~E~s~~~~-----ra~~lGvd~d~llv~~~~~~E~~~l~i~~~ 103 (333)
T 3io5_A 29 GLLILAGPSKSFKSNFGLTMVSSYMRQYPDAVCLFYDSEFGITPA-----YLRSMGVDPERVIHTPVQSLEQLRIDMVNQ 103 (333)
T ss_dssp EEEEEEESSSSSHHHHHHHHHHHHHHHCTTCEEEEEESSCCCCHH-----HHHHTTCCGGGEEEEECSBHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHhcCCCceEEEEeccchhhHH-----HHHHhCCCHHHeEEEcCCCHHHHHHHHHHH
Confidence 378999999999999999988776543113458898887665542 25566554322 1122220222233
Q ss_pred ---HhcCCeEEEEEeCCCCc
Q 035585 122 ---LKKEKMILVILDNIWKY 138 (183)
Q Consensus 122 ---~~~~~~~llvlD~~~~~ 138 (183)
+.+...-+||+|.+..+
T Consensus 104 l~~i~~~~~~lvVIDSI~aL 123 (333)
T 3io5_A 104 LDAIERGEKVVVFIDSLGNL 123 (333)
T ss_dssp HHTCCTTCCEEEEEECSTTC
T ss_pred HHHhhccCceEEEEeccccc
Confidence 34567899999998765
No 104
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=98.15 E-value=3.3e-06 Score=62.85 Aligned_cols=26 Identities=27% Similarity=0.333 Sum_probs=22.6
Q ss_pred CccEEEEEeCCCCcHHHHHHHHHhHH
Q 035585 46 NVNIVGVYGMGGIGKTTLVKEFARQA 71 (183)
Q Consensus 46 ~~~~v~i~G~~G~GKTtL~~~~~~~~ 71 (183)
+..+++|+|++|+|||||++.+...+
T Consensus 27 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 52 (243)
T 1mv5_A 27 PNSIIAFAGPSGGGKSTIFSLLERFY 52 (243)
T ss_dssp TTEEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 45689999999999999999997654
No 105
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=98.14 E-value=4.5e-07 Score=71.28 Aligned_cols=115 Identities=13% Similarity=0.096 Sum_probs=60.4
Q ss_pred CCccEEEEEeCCCCcHHHHHHHHHhHHhhhhcccceEEEEecCCcCHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHHhc
Q 035585 45 VNVNIVGVYGMGGIGKTTLVKEFARQASEEKLFDQVVFSEVSQTPDIKKIHGEIAEKLGLEFSEEAESRRASRLYERLKK 124 (183)
Q Consensus 45 ~~~~~v~i~G~~G~GKTtL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~ 124 (183)
.+..+++|+|++|+||||+++.+...+.... -..++.+.-+........ ..+..+....... ......+...++
T Consensus 121 ~~~g~i~I~GptGSGKTTlL~~l~g~~~~~~-~~~i~t~ed~~e~~~~~~-~~~v~q~~~~~~~---~~~~~~La~aL~- 194 (356)
T 3jvv_A 121 VPRGLVLVTGPTGSGKSTTLAAMLDYLNNTK-YHHILTIEDPIEFVHESK-KCLVNQREVHRDT---LGFSEALRSALR- 194 (356)
T ss_dssp CSSEEEEEECSTTSCHHHHHHHHHHHHHHHC-CCEEEEEESSCCSCCCCS-SSEEEEEEBTTTB---SCHHHHHHHHTT-
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhcccCCC-CcEEEEccCcHHhhhhcc-ccceeeeeecccc---CCHHHHHHHHhh-
Confidence 3446999999999999999999988776531 111222111110000000 0000000000000 001123334444
Q ss_pred CCeEEEEEeCCCCcccccccCcCCCCCCCCcEEEEEecChHHHh
Q 035585 125 EKMILVILDNIWKYLDLETVGIPFGDDHRGCKLLLTARDCNVLL 168 (183)
Q Consensus 125 ~~~~llvlD~~~~~~~~~~l~~~~~~~~~~~~iiitsr~~~~~~ 168 (183)
..+-+|++||+.+...+..+... ...|..+++|+|+.+...
T Consensus 195 ~~PdvillDEp~d~e~~~~~~~~---~~~G~~vl~t~H~~~~~~ 235 (356)
T 3jvv_A 195 EDPDIILVGEMRDLETIRLALTA---AETGHLVFGTLHTTSAAK 235 (356)
T ss_dssp SCCSEEEESCCCSHHHHHHHHHH---HHTTCEEEEEESCSSHHH
T ss_pred hCcCEEecCCCCCHHHHHHHHHH---HhcCCEEEEEEccChHHH
Confidence 78899999999865444333222 223667999999988764
No 106
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=98.14 E-value=5e-06 Score=62.93 Aligned_cols=26 Identities=19% Similarity=0.272 Sum_probs=22.6
Q ss_pred CccEEEEEeCCCCcHHHHHHHHHhHH
Q 035585 46 NVNIVGVYGMGGIGKTTLVKEFARQA 71 (183)
Q Consensus 46 ~~~~v~i~G~~G~GKTtL~~~~~~~~ 71 (183)
+..+++|+|++|+|||||++.+...+
T Consensus 44 ~Ge~~~i~G~nGsGKSTLlk~l~Gl~ 69 (271)
T 2ixe_A 44 PGKVTALVGPNGSGKSTVAALLQNLY 69 (271)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 44689999999999999999997654
No 107
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=98.13 E-value=6.2e-06 Score=67.53 Aligned_cols=52 Identities=17% Similarity=0.240 Sum_probs=37.1
Q ss_pred cCCCcccccchHHHHHHHHHHhc---c---------CCccEEEEEeCCCCcHHHHHHHHHhHHh
Q 035585 21 SNKGYEAFKSRLSTLKSIQDALT---D---------VNVNIVGVYGMGGIGKTTLVKEFARQAS 72 (183)
Q Consensus 21 ~~~~~~~~~gR~~~l~~l~~~l~---~---------~~~~~v~i~G~~G~GKTtL~~~~~~~~~ 72 (183)
+.....++.|.+.....+.+... + .-+.-++|+|++|+|||+|++.++....
T Consensus 26 ~~~~f~dv~G~~~~k~~l~~lv~~l~~~~~~~~lg~~ip~GvLL~GppGtGKTtLaraIa~~~~ 89 (499)
T 2dhr_A 26 PKVTFKDVAGAEEAKEELKEIVEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEAR 89 (499)
T ss_dssp CCCCTTSSCSCHHHHHHHHHHHHHHHCGGGTTTTSCCCCSEEEEECSSSSSHHHHHHHHHHHTT
T ss_pred CCCCHHHcCCcHHHHHHHHHHHHHhhchhhhhhccCCCCceEEEECCCCCCHHHHHHHHHHHhC
Confidence 34445667888877766665432 1 1123599999999999999999998754
No 108
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=98.12 E-value=3.4e-05 Score=61.45 Aligned_cols=92 Identities=15% Similarity=0.229 Sum_probs=53.6
Q ss_pred CccEEEEEeCCCCcHHHHHHHHHhHHhhhh----cccceEEEEecCCcCHHHHHHHHHHHhCCCchh-------------
Q 035585 46 NVNIVGVYGMGGIGKTTLVKEFARQASEEK----LFDQVVFSEVSQTPDIKKIHGEIAEKLGLEFSE------------- 108 (183)
Q Consensus 46 ~~~~v~i~G~~G~GKTtL~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~------------- 108 (183)
...++.|+|++|+|||||+..++....... ....++|++......... ...+++.++.....
T Consensus 177 ~Gei~~I~G~sGsGKTTLl~~la~~~~~p~~~Gg~~~~viyid~E~~~~~~r-l~~~a~~~gl~~~~vleni~~~~~~~~ 255 (400)
T 3lda_A 177 TGSITELFGEFRTGKSQLCHTLAVTCQIPLDIGGGEGKCLYIDTEGTFRPVR-LVSIAQRFGLDPDDALNNVAYARAYNA 255 (400)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSSCCCHHH-HHHHHHHTTCCHHHHHHTEEEEECCSH
T ss_pred CCcEEEEEcCCCCChHHHHHHHHHHhccCcccCCCCCcEEEEeCCCccCHHH-HHHHHHHcCCChHhHhhcEEEeccCCh
Confidence 446899999999999999998764332211 123478887765433332 23355555432210
Q ss_pred HHHHHHHHHHHHHHhcCCeEEEEEeCCCCc
Q 035585 109 EAESRRASRLYERLKKEKMILVILDNIWKY 138 (183)
Q Consensus 109 ~~~~~~~~~~~~~~~~~~~~llvlD~~~~~ 138 (183)
.........+...+...+.-+||+|++...
T Consensus 256 ~~~~~~l~~~~~~l~~~~~~llVIDs~t~~ 285 (400)
T 3lda_A 256 DHQLRLLDAAAQMMSESRFSLIVVDSVMAL 285 (400)
T ss_dssp HHHHHHHHHHHHHHHHSCEEEEEEETGGGG
T ss_pred HHHHHHHHHHHHHHHhcCCceEEecchhhh
Confidence 111122333444444567899999997643
No 109
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=98.12 E-value=6.2e-06 Score=72.24 Aligned_cols=125 Identities=18% Similarity=0.160 Sum_probs=66.8
Q ss_pred CccEEEEEeCCCCcHHHHHHHHHhH-Hhhhhc--ccceEEEEecCC-------cCH-----------HHHHHHHHHHhCC
Q 035585 46 NVNIVGVYGMGGIGKTTLVKEFARQ-ASEEKL--FDQVVFSEVSQT-------PDI-----------KKIHGEIAEKLGL 104 (183)
Q Consensus 46 ~~~~v~i~G~~G~GKTtL~~~~~~~-~~~~~~--~~~~~~~~~~~~-------~~~-----------~~~~~~i~~~l~~ 104 (183)
+...++|+|++|+|||||++.+..- ...... ...+.| ..+. .+. ..-...+++.++.
T Consensus 460 ~Ge~v~LiGpNGsGKSTLLk~LagG~i~g~~~~~~~~~~~--v~q~~~~~~~~ltv~e~l~~~~~~~~~~v~~~L~~lgL 537 (986)
T 2iw3_A 460 RARRYGICGPNGCGKSTLMRAIANGQVDGFPTQEECRTVY--VEHDIDGTHSDTSVLDFVFESGVGTKEAIKDKLIEFGF 537 (986)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHHHTCSTTCCCTTTSCEEE--TTCCCCCCCTTSBHHHHHHTTCSSCHHHHHHHHHHTTC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCcCCCccccceeEEE--EcccccccccCCcHHHHHHHhhcCHHHHHHHHHHHcCC
Confidence 4467999999999999999999831 100000 001222 2211 111 1223344555554
Q ss_pred Cc-------hhHHHHHHHHHHHHHHhcCCeEEEEEeCCCCcccc---cccCcCCCCCCCCcEEEEEecChHHHhhcCCCC
Q 035585 105 EF-------SEEAESRRASRLYERLKKEKMILVILDNIWKYLDL---ETVGIPFGDDHRGCKLLLTARDCNVLLNMSLCR 174 (183)
Q Consensus 105 ~~-------~~~~~~~~~~~~~~~~~~~~~~llvlD~~~~~~~~---~~l~~~~~~~~~~~~iiitsr~~~~~~~~~~~~ 174 (183)
.. ...+..+.....+......++-+|++||..+..+. ..+...+.. .|..+|++||+...+..+....
T Consensus 538 ~~~~~~~~~~~LSGGqkQRvaLArAL~~~P~lLLLDEPTs~LD~~~~~~l~~~L~~--~g~tvIivSHdl~~l~~~adri 615 (986)
T 2iw3_A 538 TDEMIAMPISALSGGWKMKLALARAVLRNADILLLDEPTNHLDTVNVAWLVNYLNT--CGITSITISHDSVFLDNVCEYI 615 (986)
T ss_dssp CHHHHHSBGGGCCHHHHHHHHHHHHHHTTCSEEEEESTTTTCCHHHHHHHHHHHHH--SCSEEEEECSCHHHHHHHCSEE
T ss_pred ChhhhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEECCccCCCHHHHHHHHHHHHh--CCCEEEEEECCHHHHHHhCCEE
Confidence 21 11122222222222222378899999998766442 222222222 4678999999999888665543
No 110
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=98.11 E-value=7.5e-06 Score=70.82 Aligned_cols=96 Identities=15% Similarity=0.240 Sum_probs=59.0
Q ss_pred CCcccccchHHHHHHHHHHhcc-------------CCccEEEEEeCCCCcHHHHHHHHHhHHhhhhcccceEEEEecCCc
Q 035585 23 KGYEAFKSRLSTLKSIQDALTD-------------VNVNIVGVYGMGGIGKTTLVKEFARQASEEKLFDQVVFSEVSQTP 89 (183)
Q Consensus 23 ~~~~~~~gR~~~l~~l~~~l~~-------------~~~~~v~i~G~~G~GKTtL~~~~~~~~~~~~~~~~~~~~~~~~~~ 89 (183)
-....++|.+..++.|.+++.. .....++|+|++|+|||||++.++...... .+.+++..
T Consensus 201 v~~~di~G~~~~~~~l~e~i~~~l~~~~~~~~l~i~~~~~vLL~Gp~GtGKTtLarala~~l~~~-----~i~v~~~~-- 273 (806)
T 1ypw_A 201 VGYDDVGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANETGAF-----FFLINGPE-- 273 (806)
T ss_dssp CCGGGCCSCSGGGGHHHHHHHHHHHCGGGGTSSCCCCCCEEEECSCTTSSHHHHHHHHHHTTTCE-----EEEEEHHH--
T ss_pred CCHHHhCChHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCeEEEECcCCCCHHHHHHHHHHHcCCc-----EEEEEchH--
Confidence 3445678888888888776541 345679999999999999999998865432 23333311
Q ss_pred CHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHHhcCCeEEEEEeCCCCc
Q 035585 90 DIKKIHGEIAEKLGLEFSEEAESRRASRLYERLKKEKMILVILDNIWKY 138 (183)
Q Consensus 90 ~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~llvlD~~~~~ 138 (183)
+...... .....+..++.....+.+.++++||++..
T Consensus 274 ------------l~~~~~g-~~~~~l~~vf~~a~~~~p~il~iDEid~l 309 (806)
T 1ypw_A 274 ------------IMSKLAG-ESESNLRKAFEEAEKNAPAIIFIDELDAI 309 (806)
T ss_dssp ------------HSSSSTT-HHHHHHHHHHHHHHHHCSEEEEEESGGGT
T ss_pred ------------hhhhhhh-hHHHHHHHHHHHHHhcCCcEEEeccHHHh
Confidence 1111111 11222334444444467889999999644
No 111
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20
Probab=98.11 E-value=5.7e-06 Score=65.24 Aligned_cols=25 Identities=24% Similarity=0.355 Sum_probs=22.6
Q ss_pred ccEEEEEeCCCCcHHHHHHHHHhHH
Q 035585 47 VNIVGVYGMGGIGKTTLVKEFARQA 71 (183)
Q Consensus 47 ~~~v~i~G~~G~GKTtL~~~~~~~~ 71 (183)
...++++|++|+|||++|+.+++.+
T Consensus 72 ~~~ill~Gp~GtGKT~la~~la~~l 96 (376)
T 1um8_A 72 KSNILLIGPTGSGKTLMAQTLAKHL 96 (376)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHHHT
T ss_pred CCCEEEECCCCCCHHHHHHHHHHHh
Confidence 4579999999999999999999876
No 112
>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*
Probab=98.10 E-value=6.2e-06 Score=63.69 Aligned_cols=70 Identities=16% Similarity=0.212 Sum_probs=42.1
Q ss_pred ccEEEEEeCCCCcHHHHHHHHHhHHhhhhcccceEEEEe--cCCcCHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHHhc
Q 035585 47 VNIVGVYGMGGIGKTTLVKEFARQASEEKLFDQVVFSEV--SQTPDIKKIHGEIAEKLGLEFSEEAESRRASRLYERLKK 124 (183)
Q Consensus 47 ~~~v~i~G~~G~GKTtL~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~ 124 (183)
.+.+.|+|++|+|||+|+.+++.. . ...++|+.. ....+. +. .........+.+.+..
T Consensus 123 gsviLI~GpPGsGKTtLAlqlA~~-~----G~~VlyIs~~~eE~v~~----------~~-----~~le~~l~~i~~~l~~ 182 (331)
T 2vhj_A 123 SGMVIVTGKGNSGKTPLVHALGEA-L----GGKDKYATVRFGEPLSG----------YN-----TDFNVFVDDIARAMLQ 182 (331)
T ss_dssp SEEEEEECSCSSSHHHHHHHHHHH-H----HTTSCCEEEEBSCSSTT----------CB-----CCHHHHHHHHHHHHHH
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHh-C----CCCEEEEEecchhhhhh----------hh-----cCHHHHHHHHHHHHhh
Confidence 356789999999999999999886 1 123456666 221000 00 1112223344445543
Q ss_pred CCeEEEEEeCCCCc
Q 035585 125 EKMILVILDNIWKY 138 (183)
Q Consensus 125 ~~~~llvlD~~~~~ 138 (183)
.+ +||||+++..
T Consensus 183 ~~--LLVIDsI~aL 194 (331)
T 2vhj_A 183 HR--VIVIDSLKNV 194 (331)
T ss_dssp CS--EEEEECCTTT
T ss_pred CC--EEEEeccccc
Confidence 33 9999999865
No 113
>1g5t_A COB(I)alamin adenosyltransferase; P-loop protein, cobalamin biosynthesis, RECA fold; HET: ATP; 1.80A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1g5r_A* 1g64_A*
Probab=98.09 E-value=8.2e-06 Score=58.62 Aligned_cols=115 Identities=22% Similarity=0.177 Sum_probs=67.8
Q ss_pred CccEEEEEeCCCCcHHHHHHHHHhHHhhhhcccceEEEEecCCc-CHHHHHHHHHHHhCC-----------Cchh-----
Q 035585 46 NVNIVGVYGMGGIGKTTLVKEFARQASEEKLFDQVVFSEVSQTP-DIKKIHGEIAEKLGL-----------EFSE----- 108 (183)
Q Consensus 46 ~~~~v~i~G~~G~GKTtL~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~i~~~l~~-----------~~~~----- 108 (183)
....+.|++.+|.||||+|-.+.-+.-.. -..+.++++.... ..-+ ..++..+.. ..+.
T Consensus 27 ~~g~i~v~tG~GkGKTTaA~GlalRA~g~--G~rV~~vQF~Kg~~~~gE--~~~l~~L~v~~~~~g~gf~~~~~~~~~~~ 102 (196)
T 1g5t_A 27 ERGIIIVFTGNGKGKTTAAFGTAARAVGH--GKNVGVVQFIKGTWPNGE--RNLLEPHGVEFQVMATGFTWETQNREADT 102 (196)
T ss_dssp CCCCEEEEESSSSCHHHHHHHHHHHHHHT--TCCEEEEESSCCSSCCHH--HHHHGGGTCEEEECCTTCCCCGGGHHHHH
T ss_pred cCceEEEECCCCCCHHHHHHHHHHHHHHC--CCeEEEEEeeCCCCCccH--HHHHHhCCcEEEEcccccccCCCCcHHHH
Confidence 45788999999999999999988777654 3356777665531 1111 223333310 0111
Q ss_pred HHHHHHHHHHHHHHhcCCeEEEEEeCCCCc-----ccccccCcCCCCCCCCcEEEEEecCh
Q 035585 109 EAESRRASRLYERLKKEKMILVILDNIWKY-----LDLETVGIPFGDDHRGCKLLLTARDC 164 (183)
Q Consensus 109 ~~~~~~~~~~~~~~~~~~~~llvlD~~~~~-----~~~~~l~~~~~~~~~~~~iiitsr~~ 164 (183)
.............+..++--+|||||+... ...+.+...+........+|+|+|..
T Consensus 103 ~~a~~~l~~a~~~l~~~~yDlvILDEi~~al~~g~l~~~ev~~~l~~Rp~~~~vIlTGr~a 163 (196)
T 1g5t_A 103 AACMAVWQHGKRMLADPLLDMVVLDELTYMVAYDYLPLEEVISALNARPGHQTVIITGRGC 163 (196)
T ss_dssp HHHHHHHHHHHHHTTCTTCSEEEEETHHHHHHTTSSCHHHHHHHHHTSCTTCEEEEECSSC
T ss_pred HHHHHHHHHHHHHHhcCCCCEEEEeCCCccccCCCCCHHHHHHHHHhCcCCCEEEEECCCC
Confidence 111112233444444466779999998432 33444445555666677899999965
No 114
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=98.09 E-value=3.5e-06 Score=65.51 Aligned_cols=53 Identities=26% Similarity=0.273 Sum_probs=42.1
Q ss_pred hcCCCcccccchHHHHHHHHHHhcc-----CCccEEEEEeCCCCcHHHHHHHHHhHHh
Q 035585 20 KSNKGYEAFKSRLSTLKSIQDALTD-----VNVNIVGVYGMGGIGKTTLVKEFARQAS 72 (183)
Q Consensus 20 ~~~~~~~~~~gR~~~l~~l~~~l~~-----~~~~~v~i~G~~G~GKTtL~~~~~~~~~ 72 (183)
..+.....++|++..++.+...+.. .....++|+|++|+|||||++.++..+.
T Consensus 19 lr~~~l~~~~g~~~~~~~l~~~i~~~~~~~~~~~~~ll~Gp~G~GKTTLa~~ia~~l~ 76 (334)
T 1in4_A 19 LRPKSLDEFIGQENVKKKLSLALEAAKMRGEVLDHVLLAGPPGLGKTTLAHIIASELQ 76 (334)
T ss_dssp TSCSSGGGCCSCHHHHHHHHHHHHHHHHHTCCCCCEEEESSTTSSHHHHHHHHHHHHT
T ss_pred cCCccHHHccCcHHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCcHHHHHHHHHHHhC
Confidence 4456667788998888887776642 3447799999999999999999998864
No 115
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=98.05 E-value=6.5e-05 Score=58.11 Aligned_cols=92 Identities=20% Similarity=0.315 Sum_probs=55.5
Q ss_pred CccEEEEEeCCCCcHHHHHHHHHhHHhhhh-c---ccceEEEEecCCcCHHHHHHHHHHHhCCCchh-------------
Q 035585 46 NVNIVGVYGMGGIGKTTLVKEFARQASEEK-L---FDQVVFSEVSQTPDIKKIHGEIAEKLGLEFSE------------- 108 (183)
Q Consensus 46 ~~~~v~i~G~~G~GKTtL~~~~~~~~~~~~-~---~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~------------- 108 (183)
...++.|+|++|+|||+|+.+++....... . ...++|++.........+. .++..++.....
T Consensus 106 ~G~i~~i~G~~GsGKT~la~~la~~~~~~~~~gg~~~~vlyi~~e~~~~~~~l~-~~~~~~g~~~~~~~~~l~~~~~~~~ 184 (324)
T 2z43_A 106 TRTMTEFFGEFGSGKTQLCHQLSVNVQLPPEKGGLSGKAVYIDTEGTFRWERIE-NMAKALGLDIDNVMNNIYYIRAINT 184 (324)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSSCCCHHHHH-HHHHHTTCCHHHHHHTEEEEECCSH
T ss_pred CCcEEEEECCCCCCHhHHHHHHHHHHhcccccCCCCCeEEEEECCCCCCHHHHH-HHHHHhCCCHHHHhccEEEEeCCCH
Confidence 446899999999999999999987643221 0 2358888877654333332 334444432210
Q ss_pred HHHHHHHHHHHHHHhc-CCeEEEEEeCCCCc
Q 035585 109 EAESRRASRLYERLKK-EKMILVILDNIWKY 138 (183)
Q Consensus 109 ~~~~~~~~~~~~~~~~-~~~~llvlD~~~~~ 138 (183)
......+..+...+.+ .+.-+||+|.+..+
T Consensus 185 ~~~~~~l~~l~~~~~~~~~~~lvVIDsl~~l 215 (324)
T 2z43_A 185 DHQIAIVDDLQELVSKDPSIKLIVVDSVTSH 215 (324)
T ss_dssp HHHHHHHHHHHHHHHHCTTEEEEEETTTTHH
T ss_pred HHHHHHHHHHHHHHHhccCCCEEEEeCcHHH
Confidence 1111223344444444 67889999998754
No 116
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=98.05 E-value=6.7e-06 Score=64.51 Aligned_cols=27 Identities=33% Similarity=0.521 Sum_probs=23.2
Q ss_pred CccEEEEEeCCCCcHHHHHHHHHhHHh
Q 035585 46 NVNIVGVYGMGGIGKTTLVKEFARQAS 72 (183)
Q Consensus 46 ~~~~v~i~G~~G~GKTtL~~~~~~~~~ 72 (183)
+..+++|.|++|+|||||++.++....
T Consensus 40 ~Ge~~~llGpnGsGKSTLLr~iaGl~~ 66 (355)
T 1z47_A 40 EGEMVGLLGPSGSGKTTILRLIAGLER 66 (355)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHHTSSC
T ss_pred CCCEEEEECCCCCcHHHHHHHHhCCCC
Confidence 447899999999999999999986543
No 117
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=98.03 E-value=2.4e-05 Score=65.52 Aligned_cols=26 Identities=35% Similarity=0.581 Sum_probs=22.7
Q ss_pred CccEEEEEeCCCCcHHHHHHHHHhHH
Q 035585 46 NVNIVGVYGMGGIGKTTLVKEFARQA 71 (183)
Q Consensus 46 ~~~~v~i~G~~G~GKTtL~~~~~~~~ 71 (183)
+..+++|+|++|+|||||++.+...+
T Consensus 102 ~Gei~~LvGpNGaGKSTLLkiL~Gll 127 (608)
T 3j16_B 102 PGQVLGLVGTNGIGKSTALKILAGKQ 127 (608)
T ss_dssp TTSEEEEECCTTSSHHHHHHHHHTSS
T ss_pred CCCEEEEECCCCChHHHHHHHHhcCC
Confidence 45799999999999999999998644
No 118
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12
Probab=98.03 E-value=5.6e-06 Score=64.80 Aligned_cols=27 Identities=22% Similarity=0.222 Sum_probs=23.2
Q ss_pred CccEEEEEeCCCCcHHHHHHHHHhHHh
Q 035585 46 NVNIVGVYGMGGIGKTTLVKEFARQAS 72 (183)
Q Consensus 46 ~~~~v~i~G~~G~GKTtL~~~~~~~~~ 72 (183)
+..+++|.|++|+|||||++.++....
T Consensus 25 ~Ge~~~llGpnGsGKSTLLr~iaGl~~ 51 (348)
T 3d31_A 25 SGEYFVILGPTGAGKTLFLELIAGFHV 51 (348)
T ss_dssp TTCEEEEECCCTHHHHHHHHHHHTSSC
T ss_pred CCCEEEEECCCCccHHHHHHHHHcCCC
Confidence 447899999999999999999986543
No 119
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=98.02 E-value=5.1e-05 Score=59.80 Aligned_cols=86 Identities=21% Similarity=0.257 Sum_probs=53.2
Q ss_pred CccEEEEEeCCCCcHHHHHHHHHhHHhhhhcccceEEEEecCCcCHHHHHHHHHHHhCCCchh------HHHHHHHHHHH
Q 035585 46 NVNIVGVYGMGGIGKTTLVKEFARQASEEKLFDQVVFSEVSQTPDIKKIHGEIAEKLGLEFSE------EAESRRASRLY 119 (183)
Q Consensus 46 ~~~~v~i~G~~G~GKTtL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~------~~~~~~~~~~~ 119 (183)
+..++.|+|++|+|||+|+.+++...... -..++|++........ .+..++..... .........+.
T Consensus 73 ~G~li~I~G~pGsGKTtlal~la~~~~~~--g~~vlyi~~E~s~~~~-----~a~~~g~d~~~l~i~~~~~~e~~l~~l~ 145 (366)
T 1xp8_A 73 RGRITEIYGPESGGKTTLALAIVAQAQKA--GGTCAFIDAEHALDPV-----YARALGVNTDELLVSQPDNGEQALEIME 145 (366)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHHHHT--TCCEEEEESSCCCCHH-----HHHHTTCCGGGCEEECCSSHHHHHHHHH
T ss_pred CCcEEEEEcCCCCChHHHHHHHHHHHHHC--CCeEEEEECCCChhHH-----HHHHcCCCHHHceeecCCcHHHHHHHHH
Confidence 44689999999999999999998876543 3468898887654432 23344432110 11122222222
Q ss_pred HHHhcCCeEEEEEeCCCCc
Q 035585 120 ERLKKEKMILVILDNIWKY 138 (183)
Q Consensus 120 ~~~~~~~~~llvlD~~~~~ 138 (183)
........-+||||.+..+
T Consensus 146 ~l~~~~~~~lVVIDsl~~l 164 (366)
T 1xp8_A 146 LLVRSGAIDVVVVDSVAAL 164 (366)
T ss_dssp HHHTTTCCSEEEEECTTTC
T ss_pred HHHhcCCCCEEEEeChHHh
Confidence 2233356779999998754
No 120
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=98.02 E-value=7e-05 Score=58.46 Aligned_cols=92 Identities=17% Similarity=0.287 Sum_probs=54.7
Q ss_pred CccEEEEEeCCCCcHHHHHHHHHhHHhhhh----cccceEEEEecCCcCHHHHHHHHHHHhCCCch-------------h
Q 035585 46 NVNIVGVYGMGGIGKTTLVKEFARQASEEK----LFDQVVFSEVSQTPDIKKIHGEIAEKLGLEFS-------------E 108 (183)
Q Consensus 46 ~~~~v~i~G~~G~GKTtL~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~-------------~ 108 (183)
...++.|+|++|+|||+|+.+++....... ....++|++.........+. .++..++.... .
T Consensus 121 ~G~i~~I~G~~GsGKTtla~~la~~~~~~~~~gg~~~~vlyi~~E~~~~~~~l~-~~~~~~g~~~~~~l~~l~~~~~~~~ 199 (343)
T 1v5w_A 121 SMAITEAFGEFRTGKTQLSHTLCVTAQLPGAGGYPGGKIIFIDTENTFRPDRLR-DIADRFNVDHDAVLDNVLYARAYTS 199 (343)
T ss_dssp SSEEEEEECCTTCTHHHHHHHHHHHTTSCBTTTBCCCEEEEEESSSCCCHHHHH-HHHHHTTCCHHHHHHTEEEEECCST
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCeEEEEECCCCCCHHHHH-HHHHHcCCCHHHHHhceeEeecCCH
Confidence 446899999999999999999987642211 12358888887754443332 33344433211 0
Q ss_pred HHHHHHHHHHHHHHhc--CCeEEEEEeCCCCc
Q 035585 109 EAESRRASRLYERLKK--EKMILVILDNIWKY 138 (183)
Q Consensus 109 ~~~~~~~~~~~~~~~~--~~~~llvlD~~~~~ 138 (183)
.........+...+.. .+.-+||+|.+..+
T Consensus 200 e~~~~ll~~l~~~i~~~~~~~~lvVIDsl~~l 231 (343)
T 1v5w_A 200 EHQMELLDYVAAKFHEEAGIFKLLIIDSIMAL 231 (343)
T ss_dssp THHHHHHHHHHHHHHHSCSSEEEEEEETSGGG
T ss_pred HHHHHHHHHHHHHHHhcCCCccEEEEechHHH
Confidence 1111222233344444 67889999998754
No 121
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=98.01 E-value=6.4e-05 Score=53.90 Aligned_cols=27 Identities=33% Similarity=0.421 Sum_probs=23.6
Q ss_pred CCccEEEEEeCCCCcHHHHHHHHHhHH
Q 035585 45 VNVNIVGVYGMGGIGKTTLVKEFARQA 71 (183)
Q Consensus 45 ~~~~~v~i~G~~G~GKTtL~~~~~~~~ 71 (183)
.+..+++|+|++|+||||+++.+...+
T Consensus 27 ~~g~~i~l~G~~GsGKSTl~~~L~~~~ 53 (200)
T 4eun_A 27 EPTRHVVVMGVSGSGKTTIAHGVADET 53 (200)
T ss_dssp -CCCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHhh
Confidence 456799999999999999999998875
No 122
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=98.00 E-value=7.1e-05 Score=58.57 Aligned_cols=92 Identities=22% Similarity=0.244 Sum_probs=51.9
Q ss_pred CccEEEEEeCCCCcHHHHHHHHHhHHhhhhcc----cceEEEEecCCcCHHHHHHHHHHHhCCCch-------------h
Q 035585 46 NVNIVGVYGMGGIGKTTLVKEFARQASEEKLF----DQVVFSEVSQTPDIKKIHGEIAEKLGLEFS-------------E 108 (183)
Q Consensus 46 ~~~~v~i~G~~G~GKTtL~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~-------------~ 108 (183)
...++.|+|++|+|||||+..++......... ..++|++........ -...+++.+..... .
T Consensus 130 ~G~i~~I~G~~GsGKTTL~~~l~~~~~~~~~~Gg~~G~vi~i~~e~~~~~~-~i~~i~q~~~~~~~~v~~ni~~~~~~~~ 208 (349)
T 1pzn_A 130 TQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTENTFRPE-RIREIAQNRGLDPDEVLKHIYVARAFNS 208 (349)
T ss_dssp SSEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTSCSCEEEEEESSSCCCHH-HHHHHHHTTTCCHHHHGGGEEEEECCSH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhccchhcCCCCCeEEEEeCCCCCCHH-HHHHHHHHcCCCHHHHhhCEEEEecCCh
Confidence 45789999999999999999998876321011 235787765543222 22233333322110 1
Q ss_pred HHHHHHHHHHHHHHhc-----CCeEEEEEeCCCCc
Q 035585 109 EAESRRASRLYERLKK-----EKMILVILDNIWKY 138 (183)
Q Consensus 109 ~~~~~~~~~~~~~~~~-----~~~~llvlD~~~~~ 138 (183)
......+..+...+.. .++-+||+|++...
T Consensus 209 ~~~~~~l~~~~~~~~~lS~G~~~~~llIlDs~ta~ 243 (349)
T 1pzn_A 209 NHQMLLVQQAEDKIKELLNTDRPVKLLIVDSLTSH 243 (349)
T ss_dssp HHHHHHHHHHHHHHHHSSSSSSCEEEEEEETSSTT
T ss_pred HHHHHHHHHHHHHHHHhccccCCCCEEEEeCchHh
Confidence 1111122223333333 57899999998765
No 123
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=98.00 E-value=8.9e-06 Score=67.25 Aligned_cols=26 Identities=46% Similarity=0.723 Sum_probs=22.4
Q ss_pred CccEEEEEeCCCCcHHHHHHHHHhHH
Q 035585 46 NVNIVGVYGMGGIGKTTLVKEFARQA 71 (183)
Q Consensus 46 ~~~~v~i~G~~G~GKTtL~~~~~~~~ 71 (183)
+..+++|+|++|+|||||++.+...+
T Consensus 24 ~Gei~gLiGpNGaGKSTLlkiL~Gl~ 49 (538)
T 3ozx_A 24 NNTILGVLGKNGVGKTTVLKILAGEI 49 (538)
T ss_dssp TTEEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCcHHHHHHHHhcCC
Confidence 44689999999999999999997644
No 124
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}
Probab=97.99 E-value=9.5e-06 Score=63.83 Aligned_cols=27 Identities=26% Similarity=0.370 Sum_probs=23.2
Q ss_pred CccEEEEEeCCCCcHHHHHHHHHhHHh
Q 035585 46 NVNIVGVYGMGGIGKTTLVKEFARQAS 72 (183)
Q Consensus 46 ~~~~v~i~G~~G~GKTtL~~~~~~~~~ 72 (183)
...+++|.|++|+|||||++.++....
T Consensus 28 ~Ge~~~llGpnGsGKSTLLr~iaGl~~ 54 (362)
T 2it1_A 28 DGEFMALLGPSGSGKSTLLYTIAGIYK 54 (362)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHTSSC
T ss_pred CCCEEEEECCCCchHHHHHHHHhcCCC
Confidence 457899999999999999999986543
No 125
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=97.98 E-value=2.4e-05 Score=56.26 Aligned_cols=44 Identities=18% Similarity=0.318 Sum_probs=34.8
Q ss_pred chHHHHHHHHHHhcc---CCccEEEEEeCCCCcHHHHHHHHHhHHhh
Q 035585 30 SRLSTLKSIQDALTD---VNVNIVGVYGMGGIGKTTLVKEFARQASE 73 (183)
Q Consensus 30 gR~~~l~~l~~~l~~---~~~~~v~i~G~~G~GKTtL~~~~~~~~~~ 73 (183)
.|.+.++.|.+.+.. .+..+++|.|++|+||||+++.+...+..
T Consensus 2 ~~~~~~~~l~~~~~~~~~~~~~~i~i~G~~GsGKstl~~~l~~~~~~ 48 (201)
T 1rz3_A 2 ELRDRIDFLCKTILAIKTAGRLVLGIDGLSRSGKTTLANQLSQTLRE 48 (201)
T ss_dssp CHHHHHHHHHHHHHTSCCSSSEEEEEEECTTSSHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHhccCCCeEEEEECCCCCCHHHHHHHHHHHHhh
Confidence 366677777776652 35578999999999999999999987754
No 126
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=97.96 E-value=6.3e-05 Score=59.05 Aligned_cols=86 Identities=23% Similarity=0.343 Sum_probs=52.3
Q ss_pred CccEEEEEeCCCCcHHHHHHHHHhHHhhhhcccceEEEEecCCcCHHHHHHHHHHHhCCCchh-----HHHHHHHHHHHH
Q 035585 46 NVNIVGVYGMGGIGKTTLVKEFARQASEEKLFDQVVFSEVSQTPDIKKIHGEIAEKLGLEFSE-----EAESRRASRLYE 120 (183)
Q Consensus 46 ~~~~v~i~G~~G~GKTtL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~-----~~~~~~~~~~~~ 120 (183)
+..++.|+|++|+|||||+.+++...... -..++|++.....+.. .+..++..... ....+....+..
T Consensus 62 ~G~ii~I~G~pGsGKTtLal~la~~~~~~--g~~vlyid~E~s~~~~-----~a~~~g~~~~~l~i~~~~~~e~~~~~~~ 134 (356)
T 1u94_A 62 MGRIVEIYGPESSGKTTLTLQVIAAAQRE--GKTCAFIDAEHALDPI-----YARKLGVDIDNLLCSQPDTGEQALEICD 134 (356)
T ss_dssp TTSEEEEECSTTSSHHHHHHHHHHHHHHT--TCCEEEEESSCCCCHH-----HHHHTTCCGGGCEEECCSSHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHC--CCeEEEEeCCCCccHH-----HHHHcCCChhheeeeCCCCHHHHHHHHH
Confidence 45789999999999999999998877653 3468888886654432 13344432111 001111222222
Q ss_pred HH-hcCCeEEEEEeCCCCc
Q 035585 121 RL-KKEKMILVILDNIWKY 138 (183)
Q Consensus 121 ~~-~~~~~~llvlD~~~~~ 138 (183)
.+ ...+.-+||||.+..+
T Consensus 135 ~l~~~~~~~lVVIDsl~~l 153 (356)
T 1u94_A 135 ALARSGAVDVIVVDSVAAL 153 (356)
T ss_dssp HHHHHTCCSEEEEECGGGC
T ss_pred HHHhccCCCEEEEcCHHHh
Confidence 22 3356779999997644
No 127
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=97.96 E-value=1.4e-05 Score=66.98 Aligned_cols=126 Identities=21% Similarity=0.257 Sum_probs=68.2
Q ss_pred CccEEEEEeCCCCcHHHHHHHHHhHHhhhh---cc-cceEEEEecCC------cCHHHHH--------------HHHHHH
Q 035585 46 NVNIVGVYGMGGIGKTTLVKEFARQASEEK---LF-DQVVFSEVSQT------PDIKKIH--------------GEIAEK 101 (183)
Q Consensus 46 ~~~~v~i~G~~G~GKTtL~~~~~~~~~~~~---~~-~~~~~~~~~~~------~~~~~~~--------------~~i~~~ 101 (183)
+..+++|.|++|+|||||++.+...+.... .+ ..+.|+ ++. .+..+.. ..+++.
T Consensus 381 ~Gei~~i~G~NGsGKSTLlk~l~Gl~~p~~G~I~~~~~i~~v--~Q~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~l~~ 458 (607)
T 3bk7_A 381 KGEVIGIVGPNGIGKTTFVKMLAGVEEPTEGKVEWDLTVAYK--PQYIKAEYEGTVYELLSKIDSSKLNSNFYKTELLKP 458 (607)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHTSSCCSBSCCCCCCCEEEE--CSSCCCCCSSBHHHHHHHHHHHHHHCHHHHHHTHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEEeeEEEEE--ecCccCCCCCcHHHHHHhhhccCCCHHHHHHHHHHH
Confidence 456899999999999999999998665321 01 123332 221 1222221 122233
Q ss_pred hCCC------chhHHHHHHHHHHHHHHhcCCeEEEEEeCCCCcccccc---cCcCCCC--CCCCcEEEEEecChHHHhhc
Q 035585 102 LGLE------FSEEAESRRASRLYERLKKEKMILVILDNIWKYLDLET---VGIPFGD--DHRGCKLLLTARDCNVLLNM 170 (183)
Q Consensus 102 l~~~------~~~~~~~~~~~~~~~~~~~~~~~llvlD~~~~~~~~~~---l~~~~~~--~~~~~~iiitsr~~~~~~~~ 170 (183)
++.. ....+..+.....+......++-+|++||.....+... +...+.. ...|..+|++|||...+..+
T Consensus 459 ~~l~~~~~~~~~~LSGGe~QRv~iAraL~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tvi~vsHd~~~~~~~ 538 (607)
T 3bk7_A 459 LGIIDLYDRNVEDLSGGELQRVAIAATLLRDADIYLLDEPSAYLDVEQRLAVSRAIRHLMEKNEKTALVVEHDVLMIDYV 538 (607)
T ss_dssp HTCTTTTTSBGGGCCHHHHHHHHHHHHHTSCCSEEEEECTTTTCCHHHHHHHHHHHHHHHHHTTCEEEEECSCHHHHHHH
T ss_pred cCCchHhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHh
Confidence 3221 11112223222333333347888999999876644222 1122211 12366799999999988865
Q ss_pred CCC
Q 035585 171 SLC 173 (183)
Q Consensus 171 ~~~ 173 (183)
...
T Consensus 539 adr 541 (607)
T 3bk7_A 539 SDR 541 (607)
T ss_dssp CSE
T ss_pred CCE
Confidence 554
No 128
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=97.96 E-value=6.8e-05 Score=55.10 Aligned_cols=40 Identities=20% Similarity=0.297 Sum_probs=30.7
Q ss_pred CccEEEEEeCCCCcHHHHHHHHHhHHhhhhcccceEEEEecC
Q 035585 46 NVNIVGVYGMGGIGKTTLVKEFARQASEEKLFDQVVFSEVSQ 87 (183)
Q Consensus 46 ~~~~v~i~G~~G~GKTtL~~~~~~~~~~~~~~~~~~~~~~~~ 87 (183)
+..+++|+|++|+|||||+.+++...... -..++|+....
T Consensus 22 ~G~~~~i~G~~GsGKTtl~~~~~~~~~~~--~~~v~~~~~e~ 61 (247)
T 2dr3_A 22 ERNVVLLSGGPGTGKTIFSQQFLWNGLKM--GEPGIYVALEE 61 (247)
T ss_dssp TTCEEEEEECTTSSHHHHHHHHHHHHHHT--TCCEEEEESSS
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHhc--CCeEEEEEccC
Confidence 34689999999999999999888776543 34577776554
No 129
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=97.95 E-value=5.4e-05 Score=58.20 Aligned_cols=89 Identities=19% Similarity=0.182 Sum_probs=50.0
Q ss_pred CccEEEEEeCCCCcHHHHHHHHHhHHhhhhcccceEEEEecCCc-CHHHHHHHHHHHhCCCch----hHHHHHH-HHHHH
Q 035585 46 NVNIVGVYGMGGIGKTTLVKEFARQASEEKLFDQVVFSEVSQTP-DIKKIHGEIAEKLGLEFS----EEAESRR-ASRLY 119 (183)
Q Consensus 46 ~~~~v~i~G~~G~GKTtL~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~i~~~l~~~~~----~~~~~~~-~~~~~ 119 (183)
++.+++|+|++|+||||++..++..+... -..+.++...... ...+.+...++..+.... ....... ...+.
T Consensus 103 ~~~vi~ivG~~GsGKTTl~~~LA~~l~~~--g~kV~lv~~D~~r~~a~eqL~~~~~~~gl~~~~~~s~~~~~~v~~~al~ 180 (306)
T 1vma_A 103 PPFVIMVVGVNGTGKTTSCGKLAKMFVDE--GKSVVLAAADTFRAAAIEQLKIWGERVGATVISHSEGADPAAVAFDAVA 180 (306)
T ss_dssp SCEEEEEECCTTSSHHHHHHHHHHHHHHT--TCCEEEEEECTTCHHHHHHHHHHHHHHTCEEECCSTTCCHHHHHHHHHH
T ss_pred CCeEEEEEcCCCChHHHHHHHHHHHHHhc--CCEEEEEccccccHHHHHHHHHHHHHcCCcEEecCCccCHHHHHHHHHH
Confidence 45689999999999999999999888754 3346666554322 222222334444432211 1111111 12222
Q ss_pred HHHhcCCeEEEEEeCCCC
Q 035585 120 ERLKKEKMILVILDNIWK 137 (183)
Q Consensus 120 ~~~~~~~~~llvlD~~~~ 137 (183)
..+. .+.-++++|.+-.
T Consensus 181 ~a~~-~~~dvvIiDtpg~ 197 (306)
T 1vma_A 181 HALA-RNKDVVIIDTAGR 197 (306)
T ss_dssp HHHH-TTCSEEEEEECCC
T ss_pred HHHh-cCCCEEEEECCCc
Confidence 2233 5566889998753
No 130
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=97.94 E-value=1.5e-05 Score=68.62 Aligned_cols=92 Identities=16% Similarity=0.226 Sum_probs=57.6
Q ss_pred cccchHHHHHHHHHHhc-------------cCCccEEEEEeCCCCcHHHHHHHHHhHHhhhhcccceEEEEecCCcCHHH
Q 035585 27 AFKSRLSTLKSIQDALT-------------DVNVNIVGVYGMGGIGKTTLVKEFARQASEEKLFDQVVFSEVSQTPDIKK 93 (183)
Q Consensus 27 ~~~gR~~~l~~l~~~l~-------------~~~~~~v~i~G~~G~GKTtL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 93 (183)
...|-++..+.|.+.+. ...++-++++||+|+|||.+|+.++...... ++.+..
T Consensus 478 diggl~~~k~~l~e~v~~p~~~p~~f~~~g~~~~~gvLl~GPPGtGKT~lAkaiA~e~~~~-------f~~v~~------ 544 (806)
T 3cf2_A 478 DIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQAN-------FISIKG------ 544 (806)
T ss_dssp TCCSCHHHHHHHTTTTTTTTTCSGGGSSSCCCCCSCCEEESSTTSSHHHHHHHHHHTTTCE-------EEECCH------
T ss_pred HhCCHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCceEEEecCCCCCchHHHHHHHHHhCCc-------eEEecc------
Confidence 34455555555555432 1234568999999999999999999986543 222221
Q ss_pred HHHHHHHHhCCCchhHHHHHHHHHHHHHHhcCCeEEEEEeCCCCc
Q 035585 94 IHGEIAEKLGLEFSEEAESRRASRLYERLKKEKMILVILDNIWKY 138 (183)
Q Consensus 94 ~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~llvlD~~~~~ 138 (183)
..++...... ....+..++...+...+.+|+|||+|..
T Consensus 545 --~~l~s~~vGe-----se~~vr~lF~~Ar~~~P~IifiDEiDsl 582 (806)
T 3cf2_A 545 --PELLTMWFGE-----SEANVREIFDKARQAAPCVLFFDELDSI 582 (806)
T ss_dssp --HHHHTTTCSS-----CHHHHHHHHHHHHTTCSEEEECSCGGGC
T ss_pred --chhhccccch-----HHHHHHHHHHHHHHcCCceeechhhhHH
Confidence 1222221111 1234567777777778999999999854
No 131
>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}
Probab=97.93 E-value=4.5e-05 Score=63.65 Aligned_cols=28 Identities=29% Similarity=0.397 Sum_probs=23.6
Q ss_pred CCccEEEEEeCCCCcHHHHHHHHHhHHh
Q 035585 45 VNVNIVGVYGMGGIGKTTLVKEFARQAS 72 (183)
Q Consensus 45 ~~~~~v~i~G~~G~GKTtL~~~~~~~~~ 72 (183)
.+...++|+|++|+|||||++.+...+.
T Consensus 367 ~~G~~~~ivG~sGsGKSTll~~l~g~~~ 394 (582)
T 3b5x_A 367 PQGKTVALVGRSGSGKSTIANLFTRFYD 394 (582)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence 3457899999999999999999986553
No 132
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=97.92 E-value=1.4e-05 Score=57.75 Aligned_cols=41 Identities=24% Similarity=0.354 Sum_probs=32.2
Q ss_pred HHHHHHHHHhc--cCCccEEEEEeCCCCcHHHHHHHHHhHHhh
Q 035585 33 STLKSIQDALT--DVNVNIVGVYGMGGIGKTTLVKEFARQASE 73 (183)
Q Consensus 33 ~~l~~l~~~l~--~~~~~~v~i~G~~G~GKTtL~~~~~~~~~~ 73 (183)
+.++.|.+.+. ..+..+++|.|++|+|||||++.+...+..
T Consensus 6 ~~~~~~~~~~~~~~~~g~~v~I~G~sGsGKSTl~~~l~~~~~~ 48 (208)
T 3c8u_A 6 ALCQGVLERLDPRQPGRQLVALSGAPGSGKSTLSNPLAAALSA 48 (208)
T ss_dssp HHHHHHHHHSCTTCCSCEEEEEECCTTSCTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCCCeEEEEECCCCCCHHHHHHHHHHHHhh
Confidence 45556666554 245679999999999999999999988764
No 133
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=97.92 E-value=3e-06 Score=65.21 Aligned_cols=27 Identities=22% Similarity=0.343 Sum_probs=23.0
Q ss_pred CccEEEEEeCCCCcHHHHHHHHHhHHh
Q 035585 46 NVNIVGVYGMGGIGKTTLVKEFARQAS 72 (183)
Q Consensus 46 ~~~~v~i~G~~G~GKTtL~~~~~~~~~ 72 (183)
+...++|+|++|+|||||++.+...+.
T Consensus 79 ~Ge~vaivG~sGsGKSTLl~ll~gl~~ 105 (306)
T 3nh6_A 79 PGQTLALVGPSGAGKSTILRLLFRFYD 105 (306)
T ss_dssp TTCEEEEESSSCHHHHHHHHHHTTSSC
T ss_pred CCCEEEEECCCCchHHHHHHHHHcCCC
Confidence 456899999999999999999976543
No 134
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=97.91 E-value=2.2e-05 Score=64.94 Aligned_cols=127 Identities=21% Similarity=0.237 Sum_probs=68.5
Q ss_pred CccEEEEEeCCCCcHHHHHHHHHhHHhhhh---cc-cceEEEEecCC------cCHHHHHHHH--------------HHH
Q 035585 46 NVNIVGVYGMGGIGKTTLVKEFARQASEEK---LF-DQVVFSEVSQT------PDIKKIHGEI--------------AEK 101 (183)
Q Consensus 46 ~~~~v~i~G~~G~GKTtL~~~~~~~~~~~~---~~-~~~~~~~~~~~------~~~~~~~~~i--------------~~~ 101 (183)
+..+++|+|++|+|||||++.++....... .+ ..+.|+ ++. .+..+..... ++.
T Consensus 311 ~Ge~~~i~G~NGsGKSTLlk~l~Gl~~p~~G~i~~~~~i~~v--~Q~~~~~~~~tv~~~~~~~~~~~~~~~~~~~~~l~~ 388 (538)
T 1yqt_A 311 KGEVIGIVGPNGIGKTTFVKMLAGVEEPTEGKIEWDLTVAYK--PQYIKADYEGTVYELLSKIDASKLNSNFYKTELLKP 388 (538)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHTSSCCSBCCCCCCCCEEEE--CSSCCCCCSSBHHHHHHHHHHHHHTCHHHHHHTTTT
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECceEEEE--ecCCcCCCCCcHHHHHHhhhccCCCHHHHHHHHHHH
Confidence 457899999999999999999998765321 01 113332 221 1222222111 111
Q ss_pred hCCC------chhHHHHHHHHHHHHHHhcCCeEEEEEeCCCCcccccc---cCcCCCCC--CCCcEEEEEecChHHHhhc
Q 035585 102 LGLE------FSEEAESRRASRLYERLKKEKMILVILDNIWKYLDLET---VGIPFGDD--HRGCKLLLTARDCNVLLNM 170 (183)
Q Consensus 102 l~~~------~~~~~~~~~~~~~~~~~~~~~~~llvlD~~~~~~~~~~---l~~~~~~~--~~~~~iiitsr~~~~~~~~ 170 (183)
++.. ....+..+.....+......++-+|++||.....+... +...+... ..|..||++|||.+.+..+
T Consensus 389 ~~l~~~~~~~~~~LSGGe~qrv~lAraL~~~p~lLlLDEPt~~LD~~~~~~i~~~l~~l~~~~g~tvi~vsHd~~~~~~~ 468 (538)
T 1yqt_A 389 LGIIDLYDREVNELSGGELQRVAIAATLLRDADIYLLDEPSAYLDVEQRLAVSRAIRHLMEKNEKTALVVEHDVLMIDYV 468 (538)
T ss_dssp TTCGGGTTSBGGGCCHHHHHHHHHHHHHTSCCSEEEEECTTTTCCHHHHHHHHHHHHHHHHHHTCEEEEECSCHHHHHHH
T ss_pred cCChhhhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHh
Confidence 1111 01112222223333333347889999999886654322 11222111 2366799999999988866
Q ss_pred CCCC
Q 035585 171 SLCR 174 (183)
Q Consensus 171 ~~~~ 174 (183)
....
T Consensus 469 ~drv 472 (538)
T 1yqt_A 469 SDRL 472 (538)
T ss_dssp CSEE
T ss_pred CCEE
Confidence 5543
No 135
>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G
Probab=97.90 E-value=6.3e-06 Score=64.00 Aligned_cols=52 Identities=21% Similarity=0.203 Sum_probs=39.0
Q ss_pred cCCCcccccchHHHHHHHHHHhccCCccEEEEEeCCCCcHHHHHHHHHhHHh
Q 035585 21 SNKGYEAFKSRLSTLKSIQDALTDVNVNIVGVYGMGGIGKTTLVKEFARQAS 72 (183)
Q Consensus 21 ~~~~~~~~~gR~~~l~~l~~~l~~~~~~~v~i~G~~G~GKTtL~~~~~~~~~ 72 (183)
++.....++|.+.....+...........++|+|++|+|||++|+.+++...
T Consensus 19 ~~~~f~~i~G~~~~~~~l~~~~~~~~~~~vLl~G~~GtGKT~la~~la~~~~ 70 (350)
T 1g8p_A 19 PVFPFSAIVGQEDMKLALLLTAVDPGIGGVLVFGDRGTGKSTAVRALAALLP 70 (350)
T ss_dssp CCCCGGGSCSCHHHHHHHHHHHHCGGGCCEEEECCGGGCTTHHHHHHHHHSC
T ss_pred CCCCchhccChHHHHHHHHHHhhCCCCceEEEECCCCccHHHHHHHHHHhCc
Confidence 3445567899988766655444333345699999999999999999998765
No 136
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=97.89 E-value=0.00011 Score=56.59 Aligned_cols=92 Identities=16% Similarity=0.261 Sum_probs=54.3
Q ss_pred CccEEEEEeCCCCcHHHHHHHHHhHHhhh----------hcc----cceEEEEecCCcCHHHHHHHHHHHhCCCch----
Q 035585 46 NVNIVGVYGMGGIGKTTLVKEFARQASEE----------KLF----DQVVFSEVSQTPDIKKIHGEIAEKLGLEFS---- 107 (183)
Q Consensus 46 ~~~~v~i~G~~G~GKTtL~~~~~~~~~~~----------~~~----~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~---- 107 (183)
...++.|+|++|+|||+|+.+++...... ..- ..++|++.........+. .++..++....
T Consensus 97 ~g~i~~i~G~~gsGKT~la~~la~~~~l~~~~~~~~~~~~~gg~~~~~v~yi~~e~~~~~~~l~-~~~~~~g~~~~~~~~ 175 (322)
T 2i1q_A 97 SQSVTEFAGVFGSGKTQIMHQSCVNLQNPEFLFYDEEAVSKGEVAQPKAVYIDTEGTFRPERIM-QMAEHAGIDGQTVLD 175 (322)
T ss_dssp TTEEEEEEESTTSSHHHHHHHHHHHTTCGGGEECCTTTSCTTTTSSEEEEEEESSSCCCHHHHH-HHHHHHTCCHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHhccccccccccccccCCCCCceEEEEECCCCCCHHHHH-HHHHHcCCCHHHHhc
Confidence 44689999999999999999998753211 011 458888877654333333 23344443221
Q ss_pred ---------hHHHHHHHHHHHHHHhc-CCeEEEEEeCCCCc
Q 035585 108 ---------EEAESRRASRLYERLKK-EKMILVILDNIWKY 138 (183)
Q Consensus 108 ---------~~~~~~~~~~~~~~~~~-~~~~llvlD~~~~~ 138 (183)
..........+...+.+ .+.-+||+|.+..+
T Consensus 176 ~l~~~~~~~~~~~~~~l~~l~~~~~~~~~~~lvVIDsl~~l 216 (322)
T 2i1q_A 176 NTFVARAYNSDMQMLFAEKIEDLIQEGNNIKLVVIDSLTST 216 (322)
T ss_dssp TEEEEECSSHHHHHHHHHTHHHHHHTTCEEEEEEEECSSHH
T ss_pred CEEEEeCCCHHHHHHHHHHHHHHHhhccCccEEEEECcHHH
Confidence 01111123334444554 56789999998644
No 137
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=97.87 E-value=0.00016 Score=58.28 Aligned_cols=39 Identities=28% Similarity=0.242 Sum_probs=29.8
Q ss_pred CccEEEEEeCCCCcHHHHHHHHHhHHhhhhcccceEEEEec
Q 035585 46 NVNIVGVYGMGGIGKTTLVKEFARQASEEKLFDQVVFSEVS 86 (183)
Q Consensus 46 ~~~~v~i~G~~G~GKTtL~~~~~~~~~~~~~~~~~~~~~~~ 86 (183)
++.+++++|++|+||||++..++..+... -..+..+.+.
T Consensus 99 ~p~vIlivG~~G~GKTTt~~kLA~~l~~~--G~kVllv~~D 137 (443)
T 3dm5_A 99 KPTILLMVGIQGSGKTTTVAKLARYFQKR--GYKVGVVCSD 137 (443)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHHHTT--TCCEEEEECC
T ss_pred CCeEEEEECcCCCCHHHHHHHHHHHHHHC--CCeEEEEeCC
Confidence 46799999999999999999999888764 2234444443
No 138
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=97.85 E-value=6.2e-05 Score=57.62 Aligned_cols=87 Identities=18% Similarity=0.171 Sum_probs=48.0
Q ss_pred CccEEEEEeCCCCcHHHHHHHHHhHHhhhhcccceEEEEecCC-cCHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHHhc
Q 035585 46 NVNIVGVYGMGGIGKTTLVKEFARQASEEKLFDQVVFSEVSQT-PDIKKIHGEIAEKLGLEFSEEAESRRASRLYERLKK 124 (183)
Q Consensus 46 ~~~~v~i~G~~G~GKTtL~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~ 124 (183)
+..+++++|++|+||||++..++..+.... -..+.++..... ....+.+....+..+...........+...+..+
T Consensus 104 ~g~vi~lvG~~GsGKTTl~~~LA~~l~~~~-G~~V~lv~~D~~r~~a~eqL~~~~~~~gl~~~~~~~~~~l~~al~~~-- 180 (296)
T 2px0_A 104 HSKYIVLFGSTGAGKTTTLAKLAAISMLEK-HKKIAFITTDTYRIAAVEQLKTYAELLQAPLEVCYTKEEFQQAKELF-- 180 (296)
T ss_dssp CSSEEEEEESTTSSHHHHHHHHHHHHHHTT-CCCEEEEECCCSSTTHHHHHHHHHTTTTCCCCBCSSHHHHHHHHHHG--
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHHhc-CCEEEEEecCcccchHHHHHHHHHHhcCCCeEecCCHHHHHHHHHHh--
Confidence 457999999999999999999998887521 224666655432 2333334444433332221100011122222222
Q ss_pred CCeEEEEEeCC
Q 035585 125 EKMILVILDNI 135 (183)
Q Consensus 125 ~~~~llvlD~~ 135 (183)
.+.-++|+|-.
T Consensus 181 ~~~dlvIiDT~ 191 (296)
T 2px0_A 181 SEYDHVFVDTA 191 (296)
T ss_dssp GGSSEEEEECC
T ss_pred cCCCEEEEeCC
Confidence 44567888854
No 139
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=97.83 E-value=1.2e-05 Score=66.41 Aligned_cols=48 Identities=21% Similarity=0.250 Sum_probs=32.1
Q ss_pred cCCeEEEEEeCCCCccccc------ccCcCCCCCCCCcEEEEEecChHHHhhcCCC
Q 035585 124 KEKMILVILDNIWKYLDLE------TVGIPFGDDHRGCKLLLTARDCNVLLNMSLC 173 (183)
Q Consensus 124 ~~~~~llvlD~~~~~~~~~------~l~~~~~~~~~~~~iiitsr~~~~~~~~~~~ 173 (183)
..++-+|++||..+..+.. .++..+.. .|..||++||+..++..+...
T Consensus 174 ~~~P~lLlLDEPTs~LD~~~~~~l~~~L~~l~~--~g~tvi~vsHd~~~~~~~~dr 227 (538)
T 1yqt_A 174 LRNATFYFFDEPSSYLDIRQRLNAARAIRRLSE--EGKSVLVVEHDLAVLDYLSDI 227 (538)
T ss_dssp HSCCSEEEEESTTTTCCHHHHHHHHHHHHHHHH--TTCEEEEECSCHHHHHHHCSE
T ss_pred hcCCCEEEEECCcccCCHHHHHHHHHHHHHHHh--cCCEEEEEeCCHHHHHHhCCE
Confidence 3788999999987664422 12222222 367799999999988765443
No 140
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=97.82 E-value=5.5e-05 Score=62.33 Aligned_cols=40 Identities=25% Similarity=0.183 Sum_probs=27.3
Q ss_pred CccEEEEEeCCCCcHHHHHHHHH-hHHhhhhcccceEEEEecC
Q 035585 46 NVNIVGVYGMGGIGKTTLVKEFA-RQASEEKLFDQVVFSEVSQ 87 (183)
Q Consensus 46 ~~~~v~i~G~~G~GKTtL~~~~~-~~~~~~~~~~~~~~~~~~~ 87 (183)
+..+++|.|++|+|||||++.++ .-+... -.+.+|++...
T Consensus 38 ~Ge~~~l~G~nGsGKSTL~~~~ll~Gl~~~--~~g~i~v~g~~ 78 (525)
T 1tf7_A 38 IGRSTLVSGTSGTGKTLFSIQFLYNGIIEF--DEPGVFVTFEE 78 (525)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHHHHHH--CCCEEEEESSS
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHHHhC--CCCEEEEEEeC
Confidence 45799999999999999999953 222221 23466665443
No 141
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=97.80 E-value=0.00014 Score=55.62 Aligned_cols=88 Identities=19% Similarity=0.226 Sum_probs=51.4
Q ss_pred CccEEEEEeCCCCcHHHHHHHHHhHHhhhhcccceEEEEecCCc-CHHHHHHHHHHHhCCCch----hHHHHHHHHHHHH
Q 035585 46 NVNIVGVYGMGGIGKTTLVKEFARQASEEKLFDQVVFSEVSQTP-DIKKIHGEIAEKLGLEFS----EEAESRRASRLYE 120 (183)
Q Consensus 46 ~~~~v~i~G~~G~GKTtL~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~i~~~l~~~~~----~~~~~~~~~~~~~ 120 (183)
+..+++++|++|+||||++..++..+... -..+.++...... .....+..+.+..+.... ...+.......+.
T Consensus 97 ~~~~i~i~g~~G~GKTT~~~~la~~~~~~--~~~v~l~~~d~~~~~~~~ql~~~~~~~~l~~~~~~~~~~p~~l~~~~l~ 174 (295)
T 1ls1_A 97 DRNLWFLVGLQGSGKTTTAAKLALYYKGK--GRRPLLVAADTQRPAAREQLRLLGEKVGVPVLEVMDGESPESIRRRVEE 174 (295)
T ss_dssp SSEEEEEECCTTTTHHHHHHHHHHHHHHT--TCCEEEEECCSSCHHHHHHHHHHHHHHTCCEEECCTTCCHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHc--CCeEEEecCCcccHhHHHHHHHhcccCCeEEEEcCCCCCHHHHHHHHHH
Confidence 45689999999999999999999888754 3346666655432 222223334444433221 1112222233344
Q ss_pred HHhcCCeEEEEEeCC
Q 035585 121 RLKKEKMILVILDNI 135 (183)
Q Consensus 121 ~~~~~~~~llvlD~~ 135 (183)
.+...+.-++|+|..
T Consensus 175 ~~~~~~~D~viiDtp 189 (295)
T 1ls1_A 175 KARLEARDLILVDTA 189 (295)
T ss_dssp HHHHHTCCEEEEECC
T ss_pred HHHhCCCCEEEEeCC
Confidence 443245568899987
No 142
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=97.79 E-value=2.6e-05 Score=64.50 Aligned_cols=127 Identities=17% Similarity=0.269 Sum_probs=66.6
Q ss_pred CccEEEEEeCCCCcHHHHHHHHHhHHhhhh---ccc--ceEEEEecCC------cCHHHHHHH---------------HH
Q 035585 46 NVNIVGVYGMGGIGKTTLVKEFARQASEEK---LFD--QVVFSEVSQT------PDIKKIHGE---------------IA 99 (183)
Q Consensus 46 ~~~~v~i~G~~G~GKTtL~~~~~~~~~~~~---~~~--~~~~~~~~~~------~~~~~~~~~---------------i~ 99 (183)
+..+++|+|++|+|||||++.++....... .+. .+.++ ++. ....+.... ++
T Consensus 293 ~Gei~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~~~~i~~~--~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~l 370 (538)
T 3ozx_A 293 EGEIIGILGPNGIGKTTFARILVGEITADEGSVTPEKQILSYK--PQRIFPNYDGTVQQYLENASKDALSTSSWFFEEVT 370 (538)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHTTSSCCSBCCEESSCCCEEEE--CSSCCCCCSSBHHHHHHHHCSSTTCTTSHHHHHTT
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCeeeEee--chhcccccCCCHHHHHHHhhhhccchhHHHHHHHH
Confidence 446899999999999999999987665321 011 12221 211 122222111 11
Q ss_pred HHhCCC------chhHHHHHHHHHHHHHHhcCCeEEEEEeCCCCcccccc---cCcCCCC--CCCCcEEEEEecChHHHh
Q 035585 100 EKLGLE------FSEEAESRRASRLYERLKKEKMILVILDNIWKYLDLET---VGIPFGD--DHRGCKLLLTARDCNVLL 168 (183)
Q Consensus 100 ~~l~~~------~~~~~~~~~~~~~~~~~~~~~~~llvlD~~~~~~~~~~---l~~~~~~--~~~~~~iiitsr~~~~~~ 168 (183)
+.++.. ....+..+...-.+......++-+|++||.....+... +...+.. ...|..||++|||.+.+.
T Consensus 371 ~~~~l~~~~~~~~~~LSGGq~QRv~iAraL~~~p~lLlLDEPT~gLD~~~~~~i~~~l~~l~~~~g~tvi~vsHdl~~~~ 450 (538)
T 3ozx_A 371 KRLNLHRLLESNVNDLSGGELQKLYIAATLAKEADLYVLDQPSSYLDVEERYIVAKAIKRVTRERKAVTFIIDHDLSIHD 450 (538)
T ss_dssp TTTTGGGCTTSBGGGCCHHHHHHHHHHHHHHSCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHHTTCEEEEECSCHHHHH
T ss_pred HHcCCHHHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHH
Confidence 111110 11112222222233333337889999999876644221 1111111 123667999999999888
Q ss_pred hcCCCC
Q 035585 169 NMSLCR 174 (183)
Q Consensus 169 ~~~~~~ 174 (183)
.+....
T Consensus 451 ~~aDri 456 (538)
T 3ozx_A 451 YIADRI 456 (538)
T ss_dssp HHCSEE
T ss_pred HhCCEE
Confidence 665543
No 143
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=97.78 E-value=0.00016 Score=56.07 Aligned_cols=39 Identities=23% Similarity=0.248 Sum_probs=29.5
Q ss_pred CCccEEEEEeCCCCcHHHHHHHHHhHHhhhhcccceEEEEe
Q 035585 45 VNVNIVGVYGMGGIGKTTLVKEFARQASEEKLFDQVVFSEV 85 (183)
Q Consensus 45 ~~~~~v~i~G~~G~GKTtL~~~~~~~~~~~~~~~~~~~~~~ 85 (183)
.++.+++|+|++|+||||+++.++..+... -..+.+...
T Consensus 127 ~~g~vi~lvG~nGaGKTTll~~Lag~l~~~--~g~V~l~g~ 165 (328)
T 3e70_C 127 EKPYVIMFVGFNGSGKTTTIAKLANWLKNH--GFSVVIAAS 165 (328)
T ss_dssp CSSEEEEEECCTTSSHHHHHHHHHHHHHHT--TCCEEEEEE
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHhc--CCEEEEEee
Confidence 346799999999999999999999887654 223444433
No 144
>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}
Probab=97.77 E-value=1.9e-05 Score=61.08 Aligned_cols=50 Identities=12% Similarity=0.118 Sum_probs=40.8
Q ss_pred cCCCcccccchHHHHHHHHHHhccCCccEEEEEeCCCCcHHHHHHHHHhHHh
Q 035585 21 SNKGYEAFKSRLSTLKSIQDALTDVNVNIVGVYGMGGIGKTTLVKEFARQAS 72 (183)
Q Consensus 21 ~~~~~~~~~gR~~~l~~l~~~l~~~~~~~v~i~G~~G~GKTtL~~~~~~~~~ 72 (183)
.+.....++|++..+..+...+... ..++++|++|+|||+|++.+...+.
T Consensus 22 ~~~~~~~i~g~~~~~~~l~~~l~~~--~~vll~G~pGtGKT~la~~la~~~~ 71 (331)
T 2r44_A 22 IDEVGKVVVGQKYMINRLLIGICTG--GHILLEGVPGLAKTLSVNTLAKTMD 71 (331)
T ss_dssp HHHHTTTCCSCHHHHHHHHHHHHHT--CCEEEESCCCHHHHHHHHHHHHHTT
T ss_pred HHHhccceeCcHHHHHHHHHHHHcC--CeEEEECCCCCcHHHHHHHHHHHhC
Confidence 3444567899999999888877653 5789999999999999999988764
No 145
>3thx_A DNA mismatch repair protein MSH2; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 2o8c_A* 2o8d_A* 2o8f_A* 3thw_A* 2o8b_A* 3thy_A* 3thz_A* 2o8e_A*
Probab=97.76 E-value=1.8e-05 Score=69.19 Aligned_cols=23 Identities=17% Similarity=0.132 Sum_probs=20.7
Q ss_pred CccEEEEEeCCCCcHHHHHHHHH
Q 035585 46 NVNIVGVYGMGGIGKTTLVKEFA 68 (183)
Q Consensus 46 ~~~~v~i~G~~G~GKTtL~~~~~ 68 (183)
...+++|+||+|+||||+++.+.
T Consensus 661 ~g~i~~ItGpNGsGKSTlLr~ia 683 (934)
T 3thx_A 661 KQMFHIITGPNMGGKSTYIRQTG 683 (934)
T ss_dssp TBCEEEEECCTTSSHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHH
Confidence 45799999999999999999983
No 146
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=97.75 E-value=0.00026 Score=54.55 Aligned_cols=51 Identities=20% Similarity=0.267 Sum_probs=36.0
Q ss_pred HHHHHHHHHHhccCCccEEEEEeCCCCcHHHHHHHHHhHHhhhhcccceEEEEec
Q 035585 32 LSTLKSIQDALTDVNVNIVGVYGMGGIGKTTLVKEFARQASEEKLFDQVVFSEVS 86 (183)
Q Consensus 32 ~~~l~~l~~~l~~~~~~~v~i~G~~G~GKTtL~~~~~~~~~~~~~~~~~~~~~~~ 86 (183)
-..++.+..-+ .+..++.|.|++|+|||+|+.+++.....+. ..++|+...
T Consensus 55 ~~~LD~~lgGl--~~G~l~li~G~pG~GKTtl~l~ia~~~a~~g--~~vl~~slE 105 (315)
T 3bh0_A 55 FTELDRMTYGY--KRRNFVLIAARPSMGKTAFALKQAKNMSDND--DVVNLHSLE 105 (315)
T ss_dssp CHHHHHHHSSB--CTTCEEEEECCTTSSHHHHHHHHHHHHHTTT--CEEEEEESS
T ss_pred hHHHHhhcCCC--CCCcEEEEEeCCCCCHHHHHHHHHHHHHHcC--CeEEEEECC
Confidence 34555554212 3446899999999999999999987766542 467787765
No 147
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=97.74 E-value=0.00013 Score=58.64 Aligned_cols=39 Identities=23% Similarity=0.146 Sum_probs=30.5
Q ss_pred CccEEEEEeCCCCcHHHHHHHHHhHHhhhhcccceEEEEec
Q 035585 46 NVNIVGVYGMGGIGKTTLVKEFARQASEEKLFDQVVFSEVS 86 (183)
Q Consensus 46 ~~~~v~i~G~~G~GKTtL~~~~~~~~~~~~~~~~~~~~~~~ 86 (183)
++.+++++|++|+||||++..++..+... -..+..+.+.
T Consensus 96 ~~~vI~lvG~~GsGKTTt~~kLA~~l~~~--G~kVllv~~D 134 (433)
T 3kl4_A 96 LPFIIMLVGVQGSGKTTTAGKLAYFYKKR--GYKVGLVAAD 134 (433)
T ss_dssp SSEEEEECCCTTSCHHHHHHHHHHHHHHT--TCCEEEEEEC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHc--CCeEEEEecC
Confidence 36789999999999999999999888764 2345555554
No 148
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=97.73 E-value=3.5e-05 Score=64.59 Aligned_cols=47 Identities=26% Similarity=0.285 Sum_probs=31.5
Q ss_pred cCCeEEEEEeCCCCccccc------ccCcCCCCCCCCcEEEEEecChHHHhhcCC
Q 035585 124 KEKMILVILDNIWKYLDLE------TVGIPFGDDHRGCKLLLTARDCNVLLNMSL 172 (183)
Q Consensus 124 ~~~~~llvlD~~~~~~~~~------~l~~~~~~~~~~~~iiitsr~~~~~~~~~~ 172 (183)
..++-+|++||.....+.. .++..+.. .|..||++|||..++..+..
T Consensus 244 ~~~P~lLlLDEPTs~LD~~~~~~l~~~L~~l~~--~g~tvIivsHdl~~~~~~ad 296 (607)
T 3bk7_A 244 LRKAHFYFFDEPSSYLDIRQRLKVARVIRRLAN--EGKAVLVVEHDLAVLDYLSD 296 (607)
T ss_dssp HSCCSEEEEECTTTTCCHHHHHHHHHHHHHHHH--TTCEEEEECSCHHHHHHHCS
T ss_pred hcCCCEEEEECCcccCCHHHHHHHHHHHHHHHh--cCCEEEEEecChHHHHhhCC
Confidence 3788999999987664422 22222222 36789999999998776543
No 149
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=97.71 E-value=0.00043 Score=52.91 Aligned_cols=40 Identities=20% Similarity=0.141 Sum_probs=31.1
Q ss_pred ccEEEEEeCCCCcHHHHHHHHHhHHhhhhcccceEEEEecCC
Q 035585 47 VNIVGVYGMGGIGKTTLVKEFARQASEEKLFDQVVFSEVSQT 88 (183)
Q Consensus 47 ~~~v~i~G~~G~GKTtL~~~~~~~~~~~~~~~~~~~~~~~~~ 88 (183)
..+++++|++|+||||++..++..+... -..+.++.....
T Consensus 98 ~~vi~i~G~~G~GKTT~~~~la~~~~~~--g~~v~l~~~D~~ 137 (297)
T 1j8m_F 98 PYVIMLVGVQGTGKTTTAGKLAYFYKKK--GFKVGLVGADVY 137 (297)
T ss_dssp SEEEEEECSSCSSTTHHHHHHHHHHHHT--TCCEEEEECCCS
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHC--CCeEEEEecCCC
Confidence 5689999999999999999999888754 334666666533
No 150
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=97.70 E-value=3e-05 Score=55.95 Aligned_cols=28 Identities=32% Similarity=0.444 Sum_probs=24.1
Q ss_pred CCccEEEEEeCCCCcHHHHHHHHHhHHh
Q 035585 45 VNVNIVGVYGMGGIGKTTLVKEFARQAS 72 (183)
Q Consensus 45 ~~~~~v~i~G~~G~GKTtL~~~~~~~~~ 72 (183)
.+..+++|+|++|+|||||++.+...+.
T Consensus 4 ~~~~~i~i~G~~GsGKSTl~~~l~~~~~ 31 (211)
T 3asz_A 4 PKPFVIGIAGGTASGKTTLAQALARTLG 31 (211)
T ss_dssp -CCEEEEEEESTTSSHHHHHHHHHHHHG
T ss_pred CCcEEEEEECCCCCCHHHHHHHHHHHhC
Confidence 3457899999999999999999988765
No 151
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=97.70 E-value=2.6e-05 Score=54.18 Aligned_cols=25 Identities=12% Similarity=0.179 Sum_probs=22.1
Q ss_pred cEEEEEeCCCCcHHHHHHHHHhHHh
Q 035585 48 NIVGVYGMGGIGKTTLVKEFARQAS 72 (183)
Q Consensus 48 ~~v~i~G~~G~GKTtL~~~~~~~~~ 72 (183)
.+++|.|++|+||||+++.+...+.
T Consensus 2 ~~i~l~G~~GsGKsT~~~~L~~~l~ 26 (173)
T 3kb2_A 2 TLIILEGPDCCFKSTVAAKLSKELK 26 (173)
T ss_dssp CEEEEECSSSSSHHHHHHHHHHHHC
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhC
Confidence 4789999999999999999987754
No 152
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=97.70 E-value=2.5e-05 Score=55.35 Aligned_cols=25 Identities=32% Similarity=0.424 Sum_probs=22.3
Q ss_pred CccEEEEEeCCCCcHHHHHHHHHhH
Q 035585 46 NVNIVGVYGMGGIGKTTLVKEFARQ 70 (183)
Q Consensus 46 ~~~~v~i~G~~G~GKTtL~~~~~~~ 70 (183)
+..+++|+|++|+||||+++.+...
T Consensus 8 ~g~~i~l~G~~GsGKSTl~~~La~~ 32 (191)
T 1zp6_A 8 GGNILLLSGHPGSGKSTIAEALANL 32 (191)
T ss_dssp TTEEEEEEECTTSCHHHHHHHHHTC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHhc
Confidence 3468999999999999999999876
No 153
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=97.70 E-value=2.4e-05 Score=55.26 Aligned_cols=26 Identities=12% Similarity=0.327 Sum_probs=23.0
Q ss_pred ccEEEEEeCCCCcHHHHHHHHHhHHh
Q 035585 47 VNIVGVYGMGGIGKTTLVKEFARQAS 72 (183)
Q Consensus 47 ~~~v~i~G~~G~GKTtL~~~~~~~~~ 72 (183)
..+++|+|++|+|||||++.+...+.
T Consensus 5 g~~i~i~GpsGsGKSTL~~~L~~~~~ 30 (180)
T 1kgd_A 5 RKTLVLLGAHGVGRRHIKNTLITKHP 30 (180)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHCT
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhCC
Confidence 46899999999999999999988754
No 154
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=97.70 E-value=2.9e-05 Score=55.67 Aligned_cols=26 Identities=27% Similarity=0.461 Sum_probs=22.9
Q ss_pred CccEEEEEeCCCCcHHHHHHHHHhHH
Q 035585 46 NVNIVGVYGMGGIGKTTLVKEFARQA 71 (183)
Q Consensus 46 ~~~~v~i~G~~G~GKTtL~~~~~~~~ 71 (183)
+..+++|+|++|+|||||++.+...+
T Consensus 6 ~g~ii~l~Gp~GsGKSTl~~~L~~~~ 31 (205)
T 3tr0_A 6 KANLFIISAPSGAGKTSLVRALVKAL 31 (205)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHHS
T ss_pred CCcEEEEECcCCCCHHHHHHHHHhhC
Confidence 34689999999999999999998764
No 155
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=97.69 E-value=6.4e-05 Score=53.17 Aligned_cols=31 Identities=29% Similarity=0.308 Sum_probs=26.4
Q ss_pred cCCccEEEEEeCCCCcHHHHHHHHHhHHhhh
Q 035585 44 DVNVNIVGVYGMGGIGKTTLVKEFARQASEE 74 (183)
Q Consensus 44 ~~~~~~v~i~G~~G~GKTtL~~~~~~~~~~~ 74 (183)
..+..++.|.|++|+||||+++.+...+...
T Consensus 10 ~~~~~~i~l~G~~GsGKsT~~~~L~~~l~~~ 40 (186)
T 2yvu_A 10 IEKGIVVWLTGLPGSGKTTIATRLADLLQKE 40 (186)
T ss_dssp CSCCEEEEEECCTTSSHHHHHHHHHHHHHHT
T ss_pred cCCCcEEEEEcCCCCCHHHHHHHHHHHHHhc
Confidence 3455789999999999999999999988754
No 156
>1sky_E F1-ATPase, F1-ATP synthase; F1FO ATP synthase, alpha3BETA3 SUBC F1-ATPase, hydrolase; 3.20A {Bacillus SP} SCOP: a.69.1.1 b.49.1.1 c.37.1.11
Probab=97.69 E-value=0.0004 Score=56.27 Aligned_cols=101 Identities=19% Similarity=0.290 Sum_probs=57.4
Q ss_pred HHHHHHHHHhccCCccEEEEEeCCCCcHHHHHHHHHhHHhhhhcccceEEEEecCCc-CHHHHHHHHHHHh---------
Q 035585 33 STLKSIQDALTDVNVNIVGVYGMGGIGKTTLVKEFARQASEEKLFDQVVFSEVSQTP-DIKKIHGEIAEKL--------- 102 (183)
Q Consensus 33 ~~l~~l~~~l~~~~~~~v~i~G~~G~GKTtL~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~i~~~l--------- 102 (183)
+.++.+.... +.+.++|+|++|+|||||+..+....... ....+++.-+.... ...++...+...-
T Consensus 140 r~ID~L~pi~---kGq~~~i~G~sGvGKTtL~~~l~~~~~~~-~~~i~V~~~iGerttev~el~~~l~~~~~l~~tvvv~ 215 (473)
T 1sky_E 140 KVVDLLAPYI---KGGKIGLFGGAGVGKTVLIQELIHNIAQE-HGGISVFAGVGERTREGNDLYHEMKDSGVISKTAMVF 215 (473)
T ss_dssp HHHHHHSCEE---TTCEEEEECCSSSCHHHHHHHHHHHHHHH-TCCCEEEEEESSCHHHHHHHHHHHHHTSGGGGEEEEE
T ss_pred hHHHHHhhhc---cCCEEEEECCCCCCccHHHHHHHhhhhhc-cCcEEEEeeeccCchHHHHHHHHhhhcCCcceeEEEE
Confidence 4454444332 33568999999999999999998877654 22334555555443 3444444443220
Q ss_pred --CCCchhHHH--HHHHHHHHHHHh--cCCeEEEEEeCCCC
Q 035585 103 --GLEFSEEAE--SRRASRLYERLK--KEKMILVILDNIWK 137 (183)
Q Consensus 103 --~~~~~~~~~--~~~~~~~~~~~~--~~~~~llvlD~~~~ 137 (183)
....+.... ......+.++++ +++.+||++|++..
T Consensus 216 ~~~~d~pg~r~~~~~~~ltiAEyFrd~~G~~VLl~~D~itR 256 (473)
T 1sky_E 216 GQMNEPPGARMRVALTGLTMAEYFRDEQGQDGLLFIDNIFR 256 (473)
T ss_dssp ECTTSCHHHHHHHHHHHHHHHHHHHHHSCCEEEEEEECTHH
T ss_pred EcCCCCHHHHHHHHHHHHHHHHHHHHhcCCcEEEEeccHHH
Confidence 111222111 111123445554 37899999999863
No 157
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=97.69 E-value=3.2e-05 Score=55.49 Aligned_cols=30 Identities=27% Similarity=0.369 Sum_probs=26.2
Q ss_pred cCCccEEEEEeCCCCcHHHHHHHHHhHHhh
Q 035585 44 DVNVNIVGVYGMGGIGKTTLVKEFARQASE 73 (183)
Q Consensus 44 ~~~~~~v~i~G~~G~GKTtL~~~~~~~~~~ 73 (183)
..+..+++|+|++|+||||+++.+...+..
T Consensus 22 ~~~g~~i~l~G~sGsGKSTl~~~La~~l~~ 51 (200)
T 3uie_A 22 DQKGCVIWVTGLSGSGKSTLACALNQMLYQ 51 (200)
T ss_dssp TSCCEEEEEECSTTSSHHHHHHHHHHHHHH
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHHHh
Confidence 355689999999999999999999988863
No 158
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=97.68 E-value=0.00013 Score=68.23 Aligned_cols=84 Identities=21% Similarity=0.251 Sum_probs=54.2
Q ss_pred CCccEEEEEeCCCCcHHHHHHHHHhHHhhhhcccceEEEEecCCcCHHHHHHHHHHHhCCC-------chhHHHHHHHHH
Q 035585 45 VNVNIVGVYGMGGIGKTTLVKEFARQASEEKLFDQVVFSEVSQTPDIKKIHGEIAEKLGLE-------FSEEAESRRASR 117 (183)
Q Consensus 45 ~~~~~v~i~G~~G~GKTtL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~-------~~~~~~~~~~~~ 117 (183)
.+.+.+.|+||+|+|||+||.++....... -..+.|+.+........ ++.++.+ .+. ........
T Consensus 1425 ~~g~~vll~GppGtGKT~LA~ala~ea~~~--G~~v~Fi~~e~~~~~l~-----a~~~G~dl~~l~v~~~~-~~E~~l~~ 1496 (2050)
T 3cmu_A 1425 PMGRIVEIYGPESSGKTTLTLQVIAAAQRE--GKTCAFIDAEHALDPIY-----ARKLGVDIDNLLCSQPD-TGEQALEI 1496 (2050)
T ss_dssp ETTSEEEEECCTTSSHHHHHHHHHHHHHTT--TCCEEEECTTSCCCHHH-----HHHTTCCTTTCEEECCS-SHHHHHHH
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHHHHHc--CCcEEEEEcccccCHHH-----HHHcCCCchhceeecCC-hHHHHHHH
Confidence 356799999999999999999998765543 34577877776654433 3333311 111 11223333
Q ss_pred HHHHHhcCCeEEEEEeCCC
Q 035585 118 LYERLKKEKMILVILDNIW 136 (183)
Q Consensus 118 ~~~~~~~~~~~llvlD~~~ 136 (183)
+....++.+.-+||||+++
T Consensus 1497 ~~~lvr~~~~~lVVIDsi~ 1515 (2050)
T 3cmu_A 1497 CDALARSGAVDVIVVDSVA 1515 (2050)
T ss_dssp HHHHHHHTCCSEEEESCGG
T ss_pred HHHHHhcCCCCEEEEcChh
Confidence 4444455778899999985
No 159
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=97.68 E-value=2.1e-05 Score=55.89 Aligned_cols=25 Identities=28% Similarity=0.432 Sum_probs=22.6
Q ss_pred cEEEEEeCCCCcHHHHHHHHHhHHh
Q 035585 48 NIVGVYGMGGIGKTTLVKEFARQAS 72 (183)
Q Consensus 48 ~~v~i~G~~G~GKTtL~~~~~~~~~ 72 (183)
++++|.|++|+|||||++.+...+.
T Consensus 2 ~ii~l~GpsGaGKsTl~~~L~~~~~ 26 (186)
T 3a00_A 2 RPIVISGPSGTGKSTLLKKLFAEYP 26 (186)
T ss_dssp CCEEEESSSSSSHHHHHHHHHHHCG
T ss_pred CEEEEECCCCCCHHHHHHHHHhhCC
Confidence 5789999999999999999998765
No 160
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=97.68 E-value=0.0002 Score=55.44 Aligned_cols=28 Identities=25% Similarity=0.332 Sum_probs=23.9
Q ss_pred CccEEEEEeCCCCcHHHHHHHHHhHHhh
Q 035585 46 NVNIVGVYGMGGIGKTTLVKEFARQASE 73 (183)
Q Consensus 46 ~~~~v~i~G~~G~GKTtL~~~~~~~~~~ 73 (183)
.+.+++|.|++|+|||||++.+...+..
T Consensus 91 ~p~iigI~GpsGSGKSTl~~~L~~ll~~ 118 (321)
T 3tqc_A 91 VPYIIGIAGSVAVGKSTTSRVLKALLSR 118 (321)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHTT
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHhcc
Confidence 3458999999999999999999877653
No 161
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=97.68 E-value=3.7e-05 Score=64.42 Aligned_cols=125 Identities=16% Similarity=0.159 Sum_probs=66.1
Q ss_pred cEEEEEeCCCCcHHHHHHHHHhHHhhhhc--c--cceEEEEecCC------cCHHH--------------HHHHHHHHhC
Q 035585 48 NIVGVYGMGGIGKTTLVKEFARQASEEKL--F--DQVVFSEVSQT------PDIKK--------------IHGEIAEKLG 103 (183)
Q Consensus 48 ~~v~i~G~~G~GKTtL~~~~~~~~~~~~~--~--~~~~~~~~~~~------~~~~~--------------~~~~i~~~l~ 103 (183)
.+++|.|++|+|||||++.+........- . ..+.|+ ++. ....+ ....+++.++
T Consensus 379 Eiv~iiG~NGsGKSTLlk~l~Gl~~p~~G~~~~~~~i~~~--~q~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~l~~l~ 456 (608)
T 3j16_B 379 EILVMMGENGTGKTTLIKLLAGALKPDEGQDIPKLNVSMK--PQKIAPKFPGTVRQLFFKKIRGQFLNPQFQTDVVKPLR 456 (608)
T ss_dssp CEEEEESCTTSSHHHHHHHHHTSSCCSBCCCCCSCCEEEE--CSSCCCCCCSBHHHHHHHHCSSTTTSHHHHHHTHHHHT
T ss_pred eEEEEECCCCCcHHHHHHHHhcCCCCCCCcCccCCcEEEe--cccccccCCccHHHHHHHHhhcccccHHHHHHHHHHcC
Confidence 56899999999999999999876643210 0 012222 111 01111 1122233332
Q ss_pred CC------chhHHHHHHHHHHHHHHhcCCeEEEEEeCCCCccccc---ccCcCCCC--CCCCcEEEEEecChHHHhhcCC
Q 035585 104 LE------FSEEAESRRASRLYERLKKEKMILVILDNIWKYLDLE---TVGIPFGD--DHRGCKLLLTARDCNVLLNMSL 172 (183)
Q Consensus 104 ~~------~~~~~~~~~~~~~~~~~~~~~~~llvlD~~~~~~~~~---~l~~~~~~--~~~~~~iiitsr~~~~~~~~~~ 172 (183)
.. ....+..+...-.+......++-+|++||.....+.. .+...+.. ...|..||++|||.+.+..+..
T Consensus 457 l~~~~~~~~~~LSGGqkQRv~iAraL~~~p~lLlLDEPT~gLD~~~~~~i~~ll~~l~~~~g~tviivtHdl~~~~~~aD 536 (608)
T 3j16_B 457 IDDIIDQEVQHLSGGELQRVAIVLALGIPADIYLIDEPSAYLDSEQRIICSKVIRRFILHNKKTAFIVEHDFIMATYLAD 536 (608)
T ss_dssp STTTSSSBSSSCCHHHHHHHHHHHHTTSCCSEEEECCTTTTCCHHHHHHHHHHHHHHHHHHTCEEEEECSCHHHHHHHCS
T ss_pred ChhhhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCC
Confidence 11 1111222222233333334788999999987654422 11111111 1236679999999998876554
Q ss_pred CC
Q 035585 173 CR 174 (183)
Q Consensus 173 ~~ 174 (183)
..
T Consensus 537 rv 538 (608)
T 3j16_B 537 KV 538 (608)
T ss_dssp EE
T ss_pred EE
Confidence 43
No 162
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=97.67 E-value=6e-05 Score=55.10 Aligned_cols=28 Identities=21% Similarity=0.324 Sum_probs=24.3
Q ss_pred CCccEEEEEeCCCCcHHHHHHHHHhHHh
Q 035585 45 VNVNIVGVYGMGGIGKTTLVKEFARQAS 72 (183)
Q Consensus 45 ~~~~~v~i~G~~G~GKTtL~~~~~~~~~ 72 (183)
..+++|+|.|+||+||+|.++.++.++.
T Consensus 27 ~k~kiI~llGpPGsGKgTqa~~L~~~~g 54 (217)
T 3umf_A 27 AKAKVIFVLGGPGSGKGTQCEKLVQKFH 54 (217)
T ss_dssp TSCEEEEEECCTTCCHHHHHHHHHHHHC
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHHHHC
Confidence 4567899999999999999999988753
No 163
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=97.67 E-value=2.7e-05 Score=54.55 Aligned_cols=26 Identities=15% Similarity=0.262 Sum_probs=22.8
Q ss_pred ccEEEEEeCCCCcHHHHHHHHHhHHh
Q 035585 47 VNIVGVYGMGGIGKTTLVKEFARQAS 72 (183)
Q Consensus 47 ~~~v~i~G~~G~GKTtL~~~~~~~~~ 72 (183)
..++.|+|++|+||||+++.+...+.
T Consensus 3 ~~~i~l~G~~GsGKST~a~~La~~l~ 28 (178)
T 1qhx_A 3 TRMIILNGGSSAGKSGIVRCLQSVLP 28 (178)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHSS
T ss_pred ceEEEEECCCCCCHHHHHHHHHHhcC
Confidence 35799999999999999999988754
No 164
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=97.67 E-value=3.3e-05 Score=54.71 Aligned_cols=24 Identities=38% Similarity=0.545 Sum_probs=21.7
Q ss_pred EEEEEeCCCCcHHHHHHHHHhHHh
Q 035585 49 IVGVYGMGGIGKTTLVKEFARQAS 72 (183)
Q Consensus 49 ~v~i~G~~G~GKTtL~~~~~~~~~ 72 (183)
.++|+|++|+|||||++.++..+.
T Consensus 2 ~i~l~G~nGsGKTTLl~~l~g~l~ 25 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLVKKIVERLG 25 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHG
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 478999999999999999998775
No 165
>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A
Probab=97.66 E-value=3.7e-05 Score=64.18 Aligned_cols=27 Identities=26% Similarity=0.339 Sum_probs=23.2
Q ss_pred CccEEEEEeCCCCcHHHHHHHHHhHHh
Q 035585 46 NVNIVGVYGMGGIGKTTLVKEFARQAS 72 (183)
Q Consensus 46 ~~~~v~i~G~~G~GKTtL~~~~~~~~~ 72 (183)
+...++|+|++|+|||||++.+...+.
T Consensus 368 ~G~~~~ivG~sGsGKSTLl~~l~g~~~ 394 (582)
T 3b60_A 368 AGKTVALVGRSGSGKSTIASLITRFYD 394 (582)
T ss_dssp TTCEEEEEECTTSSHHHHHHHHTTTTC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhhccC
Confidence 456899999999999999999976553
No 166
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=97.65 E-value=0.00045 Score=55.86 Aligned_cols=41 Identities=15% Similarity=0.233 Sum_probs=31.5
Q ss_pred CccEEEEEeCCCCcHHHHHHHHHhHHhhhhcccceEEEEecC
Q 035585 46 NVNIVGVYGMGGIGKTTLVKEFARQASEEKLFDQVVFSEVSQ 87 (183)
Q Consensus 46 ~~~~v~i~G~~G~GKTtL~~~~~~~~~~~~~~~~~~~~~~~~ 87 (183)
+..++.|.|++|+|||||+..++...... ....++|+....
T Consensus 202 ~G~liiI~G~pG~GKTtl~l~ia~~~~~~-~g~~Vl~~s~E~ 242 (454)
T 2r6a_A 202 RSDLIIVAARPSVGKTAFALNIAQNVATK-TNENVAIFSLEM 242 (454)
T ss_dssp TTCEEEEECCTTSCHHHHHHHHHHHHHHH-SSCCEEEEESSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHHHh-CCCcEEEEECCC
Confidence 44689999999999999999999887653 123577766554
No 167
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=97.65 E-value=3.7e-05 Score=55.14 Aligned_cols=27 Identities=41% Similarity=0.460 Sum_probs=23.8
Q ss_pred CccEEEEEeCCCCcHHHHHHHHHhHHh
Q 035585 46 NVNIVGVYGMGGIGKTTLVKEFARQAS 72 (183)
Q Consensus 46 ~~~~v~i~G~~G~GKTtL~~~~~~~~~ 72 (183)
+...++|+|++|+||||+++.+...+.
T Consensus 24 ~~~~i~l~G~~GsGKsTl~~~La~~l~ 50 (199)
T 3vaa_A 24 AMVRIFLTGYMGAGKTTLGKAFARKLN 50 (199)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHHHT
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHHcC
Confidence 446899999999999999999998763
No 168
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=97.64 E-value=2.8e-05 Score=54.24 Aligned_cols=25 Identities=28% Similarity=0.382 Sum_probs=22.2
Q ss_pred cEEEEEeCCCCcHHHHHHHHHhHHh
Q 035585 48 NIVGVYGMGGIGKTTLVKEFARQAS 72 (183)
Q Consensus 48 ~~v~i~G~~G~GKTtL~~~~~~~~~ 72 (183)
..++|+|++|+||||+++.+...+.
T Consensus 5 ~~i~l~G~~GsGKSTl~~~La~~l~ 29 (173)
T 1kag_A 5 RNIFLVGPMGAGKSTIGRQLAQQLN 29 (173)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHHTT
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhC
Confidence 5799999999999999999988754
No 169
>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=97.64 E-value=9.4e-05 Score=61.82 Aligned_cols=27 Identities=33% Similarity=0.453 Sum_probs=22.9
Q ss_pred CccEEEEEeCCCCcHHHHHHHHHhHHh
Q 035585 46 NVNIVGVYGMGGIGKTTLVKEFARQAS 72 (183)
Q Consensus 46 ~~~~v~i~G~~G~GKTtL~~~~~~~~~ 72 (183)
+...++|+|++|+|||||++.+...+.
T Consensus 368 ~Ge~~~ivG~sGsGKSTll~~l~g~~~ 394 (587)
T 3qf4_A 368 PGSLVAVLGETGSGKSTLMNLIPRLID 394 (587)
T ss_dssp TTCEEEEECSSSSSHHHHHHTTTTSSC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCcc
Confidence 457899999999999999999876543
No 170
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=97.64 E-value=3.1e-05 Score=56.03 Aligned_cols=27 Identities=19% Similarity=0.309 Sum_probs=24.0
Q ss_pred CccEEEEEeCCCCcHHHHHHHHHhHHh
Q 035585 46 NVNIVGVYGMGGIGKTTLVKEFARQAS 72 (183)
Q Consensus 46 ~~~~v~i~G~~G~GKTtL~~~~~~~~~ 72 (183)
+..+++|+||+|+|||||++.+...+.
T Consensus 7 ~g~~i~l~GpsGsGKsTl~~~L~~~~~ 33 (208)
T 3tau_A 7 RGLLIVLSGPSGVGKGTVREAVFKDPE 33 (208)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHSTT
T ss_pred CCcEEEEECcCCCCHHHHHHHHHhhCC
Confidence 457899999999999999999988764
No 171
>3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens}
Probab=97.64 E-value=0.0003 Score=51.69 Aligned_cols=23 Identities=39% Similarity=0.538 Sum_probs=18.9
Q ss_pred cEEEEEeCCCCcHHHHHHHHHhH
Q 035585 48 NIVGVYGMGGIGKTTLVKEFARQ 70 (183)
Q Consensus 48 ~~v~i~G~~G~GKTtL~~~~~~~ 70 (183)
+.+++.|++|+||||++..+.-.
T Consensus 77 ~~~~i~g~TGsGKTt~~~~~~~~ 99 (235)
T 3llm_A 77 SVVIIRGATGCGKTTQVPQFILD 99 (235)
T ss_dssp SEEEEECCTTSSHHHHHHHHHHH
T ss_pred CEEEEEeCCCCCcHHhHHHHHhc
Confidence 68999999999999877665543
No 172
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=97.63 E-value=6.1e-05 Score=66.11 Aligned_cols=51 Identities=14% Similarity=0.191 Sum_probs=32.2
Q ss_pred HHhcCCeEEEEEeCCCCcccccc---cCcCCCCCCCCcEEEEEecChHHHhhcCCC
Q 035585 121 RLKKEKMILVILDNIWKYLDLET---VGIPFGDDHRGCKLLLTARDCNVLLNMSLC 173 (183)
Q Consensus 121 ~~~~~~~~llvlD~~~~~~~~~~---l~~~~~~~~~~~~iiitsr~~~~~~~~~~~ 173 (183)
.....++-+||+||..+..+... +...+... +..||++||+.+++..+...
T Consensus 914 rAL~~~P~LLLLDEPT~gLD~~s~~~L~~~L~~~--g~tVIiISHD~e~v~~l~Dr 967 (986)
T 2iw3_A 914 AGTWQRPHLIVLDEPTNYLDRDSLGALSKALKEF--EGGVIIITHSAEFTKNLTEE 967 (986)
T ss_dssp HHHTTCCSEEEEECGGGTCCHHHHHHHHHHHHSC--SSEEEEECSCHHHHTTTCCE
T ss_pred HHHHhCCCEEEEECCccCCCHHHHHHHHHHHHHh--CCEEEEEECCHHHHHHhCCE
Confidence 33347899999999875543222 22222222 34699999999988766554
No 173
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=97.62 E-value=3.3e-05 Score=55.49 Aligned_cols=26 Identities=35% Similarity=0.445 Sum_probs=22.4
Q ss_pred ccEEEEEeCCCCcHHHHHHHHHhHHh
Q 035585 47 VNIVGVYGMGGIGKTTLVKEFARQAS 72 (183)
Q Consensus 47 ~~~v~i~G~~G~GKTtL~~~~~~~~~ 72 (183)
.+.++|+||+|+|||||++.+...+.
T Consensus 4 g~~i~lvGpsGaGKSTLl~~L~~~~~ 29 (198)
T 1lvg_A 4 PRPVVLSGPSGAGKSTLLKKLFQEHS 29 (198)
T ss_dssp -CCEEEECCTTSSHHHHHHHHHHHHT
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhCc
Confidence 46789999999999999999987654
No 174
>3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold, hydro; HET: ADP; 2.91A {Escherichia coli}
Probab=97.62 E-value=4.4e-05 Score=62.56 Aligned_cols=45 Identities=16% Similarity=0.127 Sum_probs=38.3
Q ss_pred ccccchHHHHHHHHHHhccCCccEEEEEeCCCCcHHHHHHHHHhHHh
Q 035585 26 EAFKSRLSTLKSIQDALTDVNVNIVGVYGMGGIGKTTLVKEFARQAS 72 (183)
Q Consensus 26 ~~~~gR~~~l~~l~~~l~~~~~~~v~i~G~~G~GKTtL~~~~~~~~~ 72 (183)
..++|++..++.+...+... ..++|+|++|+|||+||+.++....
T Consensus 22 ~~ivGq~~~i~~l~~al~~~--~~VLL~GpPGtGKT~LAraLa~~l~ 66 (500)
T 3nbx_X 22 KGLYERSHAIRLCLLAALSG--ESVFLLGPPGIAKSLIARRLKFAFQ 66 (500)
T ss_dssp TTCSSCHHHHHHHHHHHHHT--CEEEEECCSSSSHHHHHHHGGGGBS
T ss_pred hhhHHHHHHHHHHHHHHhcC--CeeEeecCchHHHHHHHHHHHHHHh
Confidence 56889999998888877543 5789999999999999999988764
No 175
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}
Probab=97.61 E-value=0.0006 Score=54.96 Aligned_cols=41 Identities=15% Similarity=0.024 Sum_probs=31.3
Q ss_pred CccEEEEEeCCCCcHHHHHHHHHhHHhhhhcccceEEEEecC
Q 035585 46 NVNIVGVYGMGGIGKTTLVKEFARQASEEKLFDQVVFSEVSQ 87 (183)
Q Consensus 46 ~~~~v~i~G~~G~GKTtL~~~~~~~~~~~~~~~~~~~~~~~~ 87 (183)
+..++.|.|++|+|||+|+..++...... .-..++|++...
T Consensus 199 ~G~l~ii~G~pg~GKT~lal~ia~~~a~~-~g~~vl~~slE~ 239 (444)
T 2q6t_A 199 PGSLNIIAARPAMGKTAFALTIAQNAALK-EGVGVGIYSLEM 239 (444)
T ss_dssp TTCEEEEEECTTSCHHHHHHHHHHHHHHT-TCCCEEEEESSS
T ss_pred CCcEEEEEeCCCCCHHHHHHHHHHHHHHh-CCCeEEEEECCC
Confidence 34689999999999999999999877643 123577766653
No 176
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=97.60 E-value=5.3e-05 Score=52.98 Aligned_cols=26 Identities=31% Similarity=0.489 Sum_probs=22.7
Q ss_pred CccEEEEEeCCCCcHHHHHHHHHhHH
Q 035585 46 NVNIVGVYGMGGIGKTTLVKEFARQA 71 (183)
Q Consensus 46 ~~~~v~i~G~~G~GKTtL~~~~~~~~ 71 (183)
...+++|+|++|+||||+++.+...+
T Consensus 7 ~g~~i~l~G~~GsGKSTl~~~l~~~~ 32 (175)
T 1knq_A 7 DHHIYVLMGVSGSGKSAVASEVAHQL 32 (175)
T ss_dssp TSEEEEEECSTTSCHHHHHHHHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHhh
Confidence 34689999999999999999988765
No 177
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=97.59 E-value=4.9e-05 Score=56.32 Aligned_cols=27 Identities=22% Similarity=0.287 Sum_probs=23.7
Q ss_pred CccEEEEEeCCCCcHHHHHHHHHhHHh
Q 035585 46 NVNIVGVYGMGGIGKTTLVKEFARQAS 72 (183)
Q Consensus 46 ~~~~v~i~G~~G~GKTtL~~~~~~~~~ 72 (183)
++..++|.|++|+||||+++.+...+.
T Consensus 26 ~~~~i~l~G~~GsGKSTl~k~La~~lg 52 (246)
T 2bbw_A 26 KLLRAVILGPPGSGKGTVCQRIAQNFG 52 (246)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHHC
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHhC
Confidence 457899999999999999999997653
No 178
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=97.59 E-value=5.8e-05 Score=53.44 Aligned_cols=26 Identities=31% Similarity=0.337 Sum_probs=22.8
Q ss_pred CccEEEEEeCCCCcHHHHHHHHHhHH
Q 035585 46 NVNIVGVYGMGGIGKTTLVKEFARQA 71 (183)
Q Consensus 46 ~~~~v~i~G~~G~GKTtL~~~~~~~~ 71 (183)
.+.++.|.|++|+||||+++.+...+
T Consensus 4 ~~~~I~l~G~~GsGKST~~~~L~~~l 29 (193)
T 2rhm_A 4 TPALIIVTGHPATGKTTLSQALATGL 29 (193)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHc
Confidence 34689999999999999999998765
No 179
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=97.59 E-value=5.2e-05 Score=52.63 Aligned_cols=27 Identities=30% Similarity=0.302 Sum_probs=24.2
Q ss_pred CCccEEEEEeCCCCcHHHHHHHHHhHH
Q 035585 45 VNVNIVGVYGMGGIGKTTLVKEFARQA 71 (183)
Q Consensus 45 ~~~~~v~i~G~~G~GKTtL~~~~~~~~ 71 (183)
.+..+++|.|++|+|||||++.+...+
T Consensus 31 ~~Ge~v~L~G~nGaGKTTLlr~l~g~l 57 (158)
T 1htw_A 31 EKAIMVYLNGDLGAGKTTLTRGMLQGI 57 (158)
T ss_dssp SSCEEEEEECSTTSSHHHHHHHHHHHT
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHhC
Confidence 445789999999999999999999877
No 180
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=97.59 E-value=5e-05 Score=53.56 Aligned_cols=26 Identities=23% Similarity=0.408 Sum_probs=22.9
Q ss_pred ccEEEEEeCCCCcHHHHHHHHHhHHh
Q 035585 47 VNIVGVYGMGGIGKTTLVKEFARQAS 72 (183)
Q Consensus 47 ~~~v~i~G~~G~GKTtL~~~~~~~~~ 72 (183)
...++|+|++|+||||+++.+...+.
T Consensus 5 ~~~i~l~G~~GsGKst~a~~La~~l~ 30 (185)
T 3trf_A 5 LTNIYLIGLMGAGKTSVGSQLAKLTK 30 (185)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHHC
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHhC
Confidence 46789999999999999999988764
No 181
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=97.58 E-value=3e-05 Score=70.41 Aligned_cols=27 Identities=26% Similarity=0.337 Sum_probs=22.9
Q ss_pred CccEEEEEeCCCCcHHHHHHHHHhHHh
Q 035585 46 NVNIVGVYGMGGIGKTTLVKEFARQAS 72 (183)
Q Consensus 46 ~~~~v~i~G~~G~GKTtL~~~~~~~~~ 72 (183)
+...++|+|++|+|||||++.+...+.
T Consensus 1104 ~Ge~vaIVG~SGsGKSTL~~lL~rl~~ 1130 (1321)
T 4f4c_A 1104 PGQTLALVGPSGCGKSTVVALLERFYD 1130 (1321)
T ss_dssp TTCEEEEECSTTSSTTSHHHHHTTSSC
T ss_pred CCCEEEEECCCCChHHHHHHHHhcCcc
Confidence 456799999999999999999976543
No 182
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=97.58 E-value=4.1e-05 Score=54.91 Aligned_cols=26 Identities=23% Similarity=0.389 Sum_probs=23.0
Q ss_pred ccEEEEEeCCCCcHHHHHHHHHhHHh
Q 035585 47 VNIVGVYGMGGIGKTTLVKEFARQAS 72 (183)
Q Consensus 47 ~~~v~i~G~~G~GKTtL~~~~~~~~~ 72 (183)
+.+++|+|++|+||||+++.+...+.
T Consensus 18 ~~~I~l~G~~GsGKSTla~~L~~~lg 43 (202)
T 3t61_A 18 PGSIVVMGVSGSGKSSVGEAIAEACG 43 (202)
T ss_dssp SSCEEEECSTTSCHHHHHHHHHHHHT
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhC
Confidence 46899999999999999999988763
No 183
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=97.58 E-value=4.5e-05 Score=55.06 Aligned_cols=27 Identities=22% Similarity=0.343 Sum_probs=23.7
Q ss_pred CccEEEEEeCCCCcHHHHHHHHHhHHh
Q 035585 46 NVNIVGVYGMGGIGKTTLVKEFARQAS 72 (183)
Q Consensus 46 ~~~~v~i~G~~G~GKTtL~~~~~~~~~ 72 (183)
+..+++|.|++|+|||||++.+...+.
T Consensus 19 ~Gei~~l~GpnGsGKSTLl~~l~gl~~ 45 (207)
T 1znw_A 19 VGRVVVLSGPSAVGKSTVVRCLRERIP 45 (207)
T ss_dssp CCCEEEEECSTTSSHHHHHHHHHHHST
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhCC
Confidence 457899999999999999999987763
No 184
>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}
Probab=97.58 E-value=0.00039 Score=54.11 Aligned_cols=56 Identities=14% Similarity=0.153 Sum_probs=38.3
Q ss_pred ccchHHHHHHHHHHhccCCccEEEEEeCCCCcHHHHHHHHHhHHhhhhcccceEEEEecC
Q 035585 28 FKSRLSTLKSIQDALTDVNVNIVGVYGMGGIGKTTLVKEFARQASEEKLFDQVVFSEVSQ 87 (183)
Q Consensus 28 ~~gR~~~l~~l~~~l~~~~~~~v~i~G~~G~GKTtL~~~~~~~~~~~~~~~~~~~~~~~~ 87 (183)
+-.--..++.+..-+ .+..++.|.|++|+|||+|+..++...... -..++|++..-
T Consensus 29 i~TG~~~LD~~~gGl--~~G~LiiIaG~pG~GKTt~al~ia~~~a~~--g~~Vl~fSlEm 84 (338)
T 4a1f_A 29 IPTGFVQLDNYTSGF--NKGSLVIIGARPSMGKTSLMMNMVLSALND--DRGVAVFSLEM 84 (338)
T ss_dssp BCCSCHHHHHHHCSB--CTTCEEEEEECTTSCHHHHHHHHHHHHHHT--TCEEEEEESSS
T ss_pred ccCCChHHHHHhcCC--CCCcEEEEEeCCCCCHHHHHHHHHHHHHHc--CCeEEEEeCCC
Confidence 333345565554322 344689999999999999999998887653 34577766643
No 185
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=97.57 E-value=5.3e-05 Score=52.64 Aligned_cols=27 Identities=22% Similarity=0.389 Sum_probs=23.1
Q ss_pred CccEEEEEeCCCCcHHHHHHHHHhHHh
Q 035585 46 NVNIVGVYGMGGIGKTTLVKEFARQAS 72 (183)
Q Consensus 46 ~~~~v~i~G~~G~GKTtL~~~~~~~~~ 72 (183)
+.++++|.|++|+||||+++.+..++.
T Consensus 6 ~~~~i~l~G~~GsGKSTva~~La~~lg 32 (168)
T 1zuh_A 6 HMQHLVLIGFMGSGKSSLAQELGLALK 32 (168)
T ss_dssp --CEEEEESCTTSSHHHHHHHHHHHHT
T ss_pred ccceEEEECCCCCCHHHHHHHHHHHhC
Confidence 467899999999999999999988765
No 186
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=97.57 E-value=0.0002 Score=50.76 Aligned_cols=26 Identities=23% Similarity=0.427 Sum_probs=23.0
Q ss_pred EEEEEeCCCCcHHHHHHHHHhHHhhh
Q 035585 49 IVGVYGMGGIGKTTLVKEFARQASEE 74 (183)
Q Consensus 49 ~v~i~G~~G~GKTtL~~~~~~~~~~~ 74 (183)
.|+|.|++|+||||+++.+.+.+...
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~l~~~ 27 (197)
T 2z0h_A 2 FITFEGIDGSGKSTQIQLLAQYLEKR 27 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHC
Confidence 58899999999999999999887553
No 187
>2o8b_B DNA mismatch repair protein MSH6; DNA damage response, somatic hypermutat protein-DNA complex, DNA mispair, cancer; HET: DNA ADP; 2.75A {Homo sapiens} PDB: 2o8c_B* 2o8d_B* 2o8e_B* 2o8f_B*
Probab=97.56 E-value=0.00017 Score=63.85 Aligned_cols=24 Identities=29% Similarity=0.174 Sum_probs=21.1
Q ss_pred ccEEEEEeCCCCcHHHHHHHHHhHH
Q 035585 47 VNIVGVYGMGGIGKTTLVKEFARQA 71 (183)
Q Consensus 47 ~~~v~i~G~~G~GKTtL~~~~~~~~ 71 (183)
..+++|+||+|+||||+++.+ ...
T Consensus 789 g~i~~ItGpNgsGKSTlLr~i-Gl~ 812 (1022)
T 2o8b_B 789 AYCVLVTGPNMGGKSTLMRQA-GLL 812 (1022)
T ss_dssp CCEEEEECCTTSSHHHHHHHH-HHH
T ss_pred CcEEEEECCCCCChHHHHHHH-HHH
Confidence 479999999999999999998 443
No 188
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=97.56 E-value=4.7e-05 Score=54.55 Aligned_cols=26 Identities=23% Similarity=0.337 Sum_probs=23.1
Q ss_pred CccEEEEEeCCCCcHHHHHHHHHhHH
Q 035585 46 NVNIVGVYGMGGIGKTTLVKEFARQA 71 (183)
Q Consensus 46 ~~~~v~i~G~~G~GKTtL~~~~~~~~ 71 (183)
+..+++|+|++|+||||+++.+...+
T Consensus 5 ~g~~i~l~G~~GsGKSTl~~~L~~~~ 30 (207)
T 2j41_A 5 KGLLIVLSGPSGVGKGTVRKRIFEDP 30 (207)
T ss_dssp CCCEEEEECSTTSCHHHHHHHHHHCT
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHhh
Confidence 34689999999999999999998876
No 189
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=97.55 E-value=6.4e-05 Score=53.12 Aligned_cols=27 Identities=26% Similarity=0.421 Sum_probs=23.8
Q ss_pred cEEEEEeCCCCcHHHHHHHHHhHHhhh
Q 035585 48 NIVGVYGMGGIGKTTLVKEFARQASEE 74 (183)
Q Consensus 48 ~~v~i~G~~G~GKTtL~~~~~~~~~~~ 74 (183)
..|+|.|++|+||||+++.+...+...
T Consensus 2 ~~I~i~G~~GsGKsT~~~~L~~~l~~~ 28 (194)
T 1nks_A 2 KIGIVTGIPGVGKSTVLAKVKEILDNQ 28 (194)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHHHHTT
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHhc
Confidence 468999999999999999999987643
No 190
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=97.55 E-value=5.3e-05 Score=53.00 Aligned_cols=22 Identities=36% Similarity=0.558 Sum_probs=20.3
Q ss_pred cEEEEEeCCCCcHHHHHHHHHh
Q 035585 48 NIVGVYGMGGIGKTTLVKEFAR 69 (183)
Q Consensus 48 ~~v~i~G~~G~GKTtL~~~~~~ 69 (183)
.+++|.|++|+||||+++.+..
T Consensus 3 ~~I~i~G~~GsGKST~a~~L~~ 24 (181)
T 1ly1_A 3 KIILTIGCPGSGKSTWAREFIA 24 (181)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEecCCCCCHHHHHHHHHh
Confidence 4789999999999999999887
No 191
>3thx_B DNA mismatch repair protein MSH3; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 3thw_B* 3thy_B* 3thz_B*
Probab=97.55 E-value=3.9e-05 Score=67.05 Aligned_cols=24 Identities=21% Similarity=0.257 Sum_probs=21.2
Q ss_pred CccEEEEEeCCCCcHHHHHHHHHh
Q 035585 46 NVNIVGVYGMGGIGKTTLVKEFAR 69 (183)
Q Consensus 46 ~~~~v~i~G~~G~GKTtL~~~~~~ 69 (183)
...+++|+||+|+||||+++.+..
T Consensus 672 ~g~i~~ItGPNGaGKSTlLr~i~~ 695 (918)
T 3thx_B 672 SERVMIITGPNMGGKSSYIKQVAL 695 (918)
T ss_dssp SCCEEEEESCCCHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCchHHHHHHHHH
Confidence 457899999999999999999864
No 192
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=97.55 E-value=0.00014 Score=55.45 Aligned_cols=30 Identities=17% Similarity=0.066 Sum_probs=26.0
Q ss_pred CCccEEEEEeCCCCcHHHHHHHHHhHHhhh
Q 035585 45 VNVNIVGVYGMGGIGKTTLVKEFARQASEE 74 (183)
Q Consensus 45 ~~~~~v~i~G~~G~GKTtL~~~~~~~~~~~ 74 (183)
.++.+++|.|++|+|||||++.+...+...
T Consensus 29 ~~~~ii~I~G~sGsGKSTla~~L~~~l~~~ 58 (290)
T 1odf_A 29 KCPLFIFFSGPQGSGKSFTSIQIYNHLMEK 58 (290)
T ss_dssp CSCEEEEEECCTTSSHHHHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhhhc
Confidence 456789999999999999999999888653
No 193
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=97.55 E-value=0.0001 Score=56.13 Aligned_cols=27 Identities=22% Similarity=0.206 Sum_probs=23.3
Q ss_pred CCccEEEEEeCCCCcHHHHHHHHHhHH
Q 035585 45 VNVNIVGVYGMGGIGKTTLVKEFARQA 71 (183)
Q Consensus 45 ~~~~~v~i~G~~G~GKTtL~~~~~~~~ 71 (183)
..+.+++|.|++|+||||+++.+...+
T Consensus 31 ~~~~livl~G~sGsGKSTla~~L~~~~ 57 (287)
T 1gvn_B 31 ESPTAFLLGGQPGSGKTSLRSAIFEET 57 (287)
T ss_dssp SSCEEEEEECCTTSCTHHHHHHHHHHT
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 345689999999999999999998765
No 194
>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}
Probab=97.55 E-value=0.00013 Score=61.94 Aligned_cols=41 Identities=20% Similarity=0.173 Sum_probs=26.2
Q ss_pred eEEEEEeCCCCcccc------cccCcCCCCCCCCcEEEEEecChHHHhh
Q 035585 127 MILVILDNIWKYLDL------ETVGIPFGDDHRGCKLLLTARDCNVLLN 169 (183)
Q Consensus 127 ~~llvlD~~~~~~~~------~~l~~~~~~~~~~~~iiitsr~~~~~~~ 169 (183)
+-+|++||.....+. ..+...+. ..|..||++|||.+++..
T Consensus 223 ~~lLlLDEPtsgLD~~~~~~l~~~l~~l~--~~g~tvi~vtHd~~~~~~ 269 (670)
T 3ux8_A 223 GVLYVLDEPSIGLHQRDNDRLIATLKSMR--DLGNTLIVVEHDEDTMLA 269 (670)
T ss_dssp SCEEEEECTTTTCCGGGHHHHHHHHHHHH--HTTCEEEEECCCHHHHHH
T ss_pred CCEEEEECCccCCCHHHHHHHHHHHHHHH--HcCCEEEEEeCCHHHHhh
Confidence 349999998755432 12222222 236789999999987664
No 195
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=97.54 E-value=4.4e-05 Score=54.94 Aligned_cols=27 Identities=30% Similarity=0.455 Sum_probs=23.5
Q ss_pred CccEEEEEeCCCCcHHHHHHHHHhHHh
Q 035585 46 NVNIVGVYGMGGIGKTTLVKEFARQAS 72 (183)
Q Consensus 46 ~~~~v~i~G~~G~GKTtL~~~~~~~~~ 72 (183)
+..+++|+|++|+||||+++.+...+.
T Consensus 11 ~~~~i~l~G~sGsGKsTl~~~L~~~~~ 37 (204)
T 2qor_A 11 RIPPLVVCGPSGVGKGTLIKKVLSEFP 37 (204)
T ss_dssp CCCCEEEECCTTSCHHHHHHHHHHHCT
T ss_pred cCCEEEEECCCCCCHHHHHHHHHHhCc
Confidence 346899999999999999999988764
No 196
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=97.54 E-value=5e-05 Score=52.65 Aligned_cols=20 Identities=30% Similarity=0.561 Sum_probs=18.6
Q ss_pred cEEEEEeCCCCcHHHHHHHH
Q 035585 48 NIVGVYGMGGIGKTTLVKEF 67 (183)
Q Consensus 48 ~~v~i~G~~G~GKTtL~~~~ 67 (183)
.+++|.|++|+||||+++.+
T Consensus 2 ~~I~l~G~~GsGKsT~a~~L 21 (179)
T 3lw7_A 2 KVILITGMPGSGKSEFAKLL 21 (179)
T ss_dssp CEEEEECCTTSCHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHH
Confidence 47899999999999999998
No 197
>3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain, PIN-tower interface, coupling hydrolysis to DNA unwinding, ssDNA; 3.30A {Enterobacteria phage T4}
Probab=97.54 E-value=0.00029 Score=57.03 Aligned_cols=41 Identities=22% Similarity=0.310 Sum_probs=30.2
Q ss_pred HHHHHHHHHhccCCccEEEEEeCCCCcHHHHHHHHHhHHhhh
Q 035585 33 STLKSIQDALTDVNVNIVGVYGMGGIGKTTLVKEFARQASEE 74 (183)
Q Consensus 33 ~~l~~l~~~l~~~~~~~v~i~G~~G~GKTtL~~~~~~~~~~~ 74 (183)
+.+..+...+.+.. +.++|.|++|+|||+++..+...+...
T Consensus 32 ~av~~~~~~i~~~~-~~~li~G~aGTGKT~ll~~~~~~l~~~ 72 (459)
T 3upu_A 32 NAFNIVMKAIKEKK-HHVTINGPAGTGATTLTKFIIEALIST 72 (459)
T ss_dssp HHHHHHHHHHHSSS-CEEEEECCTTSCHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhcCC-CEEEEEeCCCCCHHHHHHHHHHHHHhc
Confidence 33444444444333 489999999999999999999888765
No 198
>2fz4_A DNA repair protein RAD25; RECA-like domain, DNA damage recognition domain, DNA binding; HET: DNA; 2.40A {Archaeoglobus fulgidus} SCOP: c.37.1.19
Probab=97.54 E-value=0.00034 Score=51.61 Aligned_cols=41 Identities=20% Similarity=0.090 Sum_probs=29.5
Q ss_pred ccchHHHHHHHHHHhccCCccEEEEEeCCCCcHHHHHHHHHhHH
Q 035585 28 FKSRLSTLKSIQDALTDVNVNIVGVYGMGGIGKTTLVKEFARQA 71 (183)
Q Consensus 28 ~~gR~~~l~~l~~~l~~~~~~~v~i~G~~G~GKTtL~~~~~~~~ 71 (183)
+.-|.-+.+.+..++.. ..++|+|++|+|||.++..+....
T Consensus 92 ~~l~~~Q~~ai~~~~~~---~~~ll~~~tG~GKT~~a~~~~~~~ 132 (237)
T 2fz4_A 92 ISLRDYQEKALERWLVD---KRGCIVLPTGSGKTHVAMAAINEL 132 (237)
T ss_dssp CCCCHHHHHHHHHHTTT---SEEEEEESSSTTHHHHHHHHHHHS
T ss_pred CCcCHHHHHHHHHHHhC---CCEEEEeCCCCCHHHHHHHHHHHc
Confidence 34466666666666543 248899999999999998877654
No 199
>2yl4_A ATP-binding cassette SUB-family B member 10, mitochondrial; membrane protein, mitochondrial transport; HET: ACP LMT CDL 14Y; 2.85A {Homo sapiens} PDB: 4aa3_A*
Probab=97.54 E-value=6.6e-05 Score=62.80 Aligned_cols=27 Identities=22% Similarity=0.361 Sum_probs=23.0
Q ss_pred CccEEEEEeCCCCcHHHHHHHHHhHHh
Q 035585 46 NVNIVGVYGMGGIGKTTLVKEFARQAS 72 (183)
Q Consensus 46 ~~~~v~i~G~~G~GKTtL~~~~~~~~~ 72 (183)
+...++|+|++|+|||||++.+...++
T Consensus 369 ~G~~~~ivG~sGsGKSTLl~~l~g~~~ 395 (595)
T 2yl4_A 369 SGSVTALVGPSGSGKSTVLSLLLRLYD 395 (595)
T ss_dssp TTCEEEEECCTTSSSTHHHHHHTTSSC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCcC
Confidence 456899999999999999999976543
No 200
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=97.54 E-value=6.5e-05 Score=53.04 Aligned_cols=26 Identities=27% Similarity=0.339 Sum_probs=23.5
Q ss_pred cEEEEEeCCCCcHHHHHHHHHhHHhh
Q 035585 48 NIVGVYGMGGIGKTTLVKEFARQASE 73 (183)
Q Consensus 48 ~~v~i~G~~G~GKTtL~~~~~~~~~~ 73 (183)
..++|.|++|+||||+++.+...+..
T Consensus 4 ~~I~i~G~~GsGKsT~~~~L~~~l~~ 29 (192)
T 1kht_A 4 KVVVVTGVPGVGSTTSSQLAMDNLRK 29 (192)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHHHT
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHh
Confidence 57999999999999999999988764
No 201
>1wb9_A DNA mismatch repair protein MUTS; DNA-binding, ATP-binding, DNA binding, DNA repair, mismatch recognition; HET: DNA ADP; 2.10A {Escherichia coli} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1wbb_A* 1e3m_A* 1oh5_A* 1oh6_A* 1oh7_A* 1oh8_A* 1w7a_A* 2wtu_A* 1wbd_A* 1ng9_A* 3k0s_A*
Probab=97.54 E-value=0.00011 Score=63.45 Aligned_cols=26 Identities=19% Similarity=0.139 Sum_probs=22.6
Q ss_pred CCccEEEEEeCCCCcHHHHHHHHHhH
Q 035585 45 VNVNIVGVYGMGGIGKTTLVKEFARQ 70 (183)
Q Consensus 45 ~~~~~v~i~G~~G~GKTtL~~~~~~~ 70 (183)
.+..+++|+||+|+||||+++.+...
T Consensus 605 ~~g~i~~ItGpNGsGKSTlLr~iagl 630 (800)
T 1wb9_A 605 PQRRMLIITGPNMGGKSTYMRQTALI 630 (800)
T ss_dssp SSSCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCCcEEEEECCCCCChHHHHHHHHHH
Confidence 34579999999999999999998764
No 202
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=97.53 E-value=5.8e-05 Score=55.23 Aligned_cols=27 Identities=19% Similarity=0.322 Sum_probs=23.9
Q ss_pred CccEEEEEeCCCCcHHHHHHHHHhHHh
Q 035585 46 NVNIVGVYGMGGIGKTTLVKEFARQAS 72 (183)
Q Consensus 46 ~~~~v~i~G~~G~GKTtL~~~~~~~~~ 72 (183)
+..+++|+||+|+|||||++.+.....
T Consensus 15 ~G~ii~l~GpsGsGKSTLlk~L~g~~~ 41 (219)
T 1s96_A 15 QGTLYIVSAPSGAGKSSLIQALLKTQP 41 (219)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHHSC
T ss_pred CCcEEEEECCCCCCHHHHHHHHhccCC
Confidence 457899999999999999999988765
No 203
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=97.53 E-value=0.00011 Score=53.14 Aligned_cols=41 Identities=17% Similarity=0.198 Sum_probs=30.3
Q ss_pred HHHHHHHHHhccC-CccEEEEEeCCCCcHHHHHHHHHhHHhh
Q 035585 33 STLKSIQDALTDV-NVNIVGVYGMGGIGKTTLVKEFARQASE 73 (183)
Q Consensus 33 ~~l~~l~~~l~~~-~~~~v~i~G~~G~GKTtL~~~~~~~~~~ 73 (183)
..+..+..++.+. +...++++||+|+|||++|..+++.+..
T Consensus 43 ~f~~~l~~~~~~iPkkn~ili~GPPGtGKTt~a~ala~~l~g 84 (212)
T 1tue_A 43 TFLGALKSFLKGTPKKNCLVFCGPANTGKSYFGMSFIHFIQG 84 (212)
T ss_dssp HHHHHHHHHHHTCTTCSEEEEESCGGGCHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHhcCCcccEEEEECCCCCCHHHHHHHHHHHhCC
Confidence 4455566665532 2347999999999999999999887643
No 204
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=97.52 E-value=6.2e-05 Score=52.91 Aligned_cols=27 Identities=37% Similarity=0.461 Sum_probs=23.1
Q ss_pred CccEEEEEeCCCCcHHHHHHHHHhHHh
Q 035585 46 NVNIVGVYGMGGIGKTTLVKEFARQAS 72 (183)
Q Consensus 46 ~~~~v~i~G~~G~GKTtL~~~~~~~~~ 72 (183)
....++|+|++|+||||+++.+...+.
T Consensus 10 ~~~~i~i~G~~GsGKst~~~~l~~~~~ 36 (180)
T 3iij_A 10 LLPNILLTGTPGVGKTTLGKELASKSG 36 (180)
T ss_dssp CCCCEEEECSTTSSHHHHHHHHHHHHC
T ss_pred cCCeEEEEeCCCCCHHHHHHHHHHHhC
Confidence 346789999999999999999987753
No 205
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=97.52 E-value=0.00049 Score=56.14 Aligned_cols=29 Identities=31% Similarity=0.520 Sum_probs=25.1
Q ss_pred CccEEEEEeCCCCcHHHHHHHHHhHHhhh
Q 035585 46 NVNIVGVYGMGGIGKTTLVKEFARQASEE 74 (183)
Q Consensus 46 ~~~~v~i~G~~G~GKTtL~~~~~~~~~~~ 74 (183)
+..+++|+|++|+|||||++.+...+...
T Consensus 292 ~GeVI~LVGpNGSGKTTLl~~LAgll~~~ 320 (503)
T 2yhs_A 292 APFVILMVGVNGVGKTTTIGKLARQFEQQ 320 (503)
T ss_dssp TTEEEEEECCTTSSHHHHHHHHHHHHHHT
T ss_pred CCeEEEEECCCcccHHHHHHHHHHHhhhc
Confidence 45689999999999999999999887653
No 206
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=97.51 E-value=7.6e-05 Score=55.31 Aligned_cols=28 Identities=21% Similarity=0.335 Sum_probs=24.1
Q ss_pred CCccEEEEEeCCCCcHHHHHHHHHhHHh
Q 035585 45 VNVNIVGVYGMGGIGKTTLVKEFARQAS 72 (183)
Q Consensus 45 ~~~~~v~i~G~~G~GKTtL~~~~~~~~~ 72 (183)
.+..+++|.|++|+|||||++.+...+.
T Consensus 23 ~~g~iigI~G~~GsGKSTl~k~L~~~lG 50 (245)
T 2jeo_A 23 MRPFLIGVSGGTASGKSTVCEKIMELLG 50 (245)
T ss_dssp CCSEEEEEECSTTSSHHHHHHHHHHHHT
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHhc
Confidence 3456899999999999999999988764
No 207
>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A
Probab=97.51 E-value=3.5e-05 Score=64.26 Aligned_cols=28 Identities=32% Similarity=0.392 Sum_probs=23.2
Q ss_pred CCccEEEEEeCCCCcHHHHHHHHHhHHh
Q 035585 45 VNVNIVGVYGMGGIGKTTLVKEFARQAS 72 (183)
Q Consensus 45 ~~~~~v~i~G~~G~GKTtL~~~~~~~~~ 72 (183)
.+...++|+|++|+|||||++.+...+.
T Consensus 365 ~~G~~~~ivG~sGsGKSTll~~l~g~~~ 392 (578)
T 4a82_A 365 EKGETVAFVGMSGGGKSTLINLIPRFYD 392 (578)
T ss_dssp CTTCEEEEECSTTSSHHHHHTTTTTSSC
T ss_pred CCCCEEEEECCCCChHHHHHHHHhcCCC
Confidence 3457899999999999999999876543
No 208
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=97.51 E-value=8.4e-05 Score=52.72 Aligned_cols=27 Identities=30% Similarity=0.364 Sum_probs=23.5
Q ss_pred CccEEEEEeCCCCcHHHHHHHHHhHHh
Q 035585 46 NVNIVGVYGMGGIGKTTLVKEFARQAS 72 (183)
Q Consensus 46 ~~~~v~i~G~~G~GKTtL~~~~~~~~~ 72 (183)
+...++|.|++|+||||+++.+...+.
T Consensus 8 ~~~~I~l~G~~GsGKsT~~~~La~~l~ 34 (196)
T 2c95_A 8 KTNIIFVVGGPGSGKGTQCEKIVQKYG 34 (196)
T ss_dssp TSCEEEEEECTTSSHHHHHHHHHHHHC
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHhC
Confidence 456899999999999999999988653
No 209
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=97.51 E-value=0.00013 Score=56.02 Aligned_cols=28 Identities=32% Similarity=0.504 Sum_probs=24.8
Q ss_pred CccEEEEEeCCCCcHHHHHHHHHhHHhh
Q 035585 46 NVNIVGVYGMGGIGKTTLVKEFARQASE 73 (183)
Q Consensus 46 ~~~~v~i~G~~G~GKTtL~~~~~~~~~~ 73 (183)
+..+++|+|++|+||||+++.++..+..
T Consensus 101 ~g~vi~lvG~nGsGKTTll~~Lagll~~ 128 (304)
T 1rj9_A 101 KGRVVLVVGVNGVGKTTTIAKLGRYYQN 128 (304)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHHHHHHT
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHHh
Confidence 4579999999999999999999987764
No 210
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=97.50 E-value=0.00012 Score=51.36 Aligned_cols=29 Identities=34% Similarity=0.462 Sum_probs=25.3
Q ss_pred CccEEEEEeCCCCcHHHHHHHHHhHHhhh
Q 035585 46 NVNIVGVYGMGGIGKTTLVKEFARQASEE 74 (183)
Q Consensus 46 ~~~~v~i~G~~G~GKTtL~~~~~~~~~~~ 74 (183)
..+++.|.|++|+|||||+..+...+..+
T Consensus 3 ~~~~i~i~G~sGsGKTTl~~~L~~~l~~~ 31 (169)
T 1xjc_A 3 AMNVWQVVGYKHSGKTTLMEKWVAAAVRE 31 (169)
T ss_dssp -CCEEEEECCTTSSHHHHHHHHHHHHHHT
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHhhHhc
Confidence 45789999999999999999999988764
No 211
>3fwy_A Light-independent protochlorophyllide reductase I ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2}
Probab=97.50 E-value=0.00019 Score=55.37 Aligned_cols=65 Identities=20% Similarity=0.154 Sum_probs=33.6
Q ss_pred cCCCcccccchHHHHHHHHHHhccCCccEEEEEeCCCCcHHHHHHHHHhHHhhhhcccceEEEEecC
Q 035585 21 SNKGYEAFKSRLSTLKSIQDALTDVNVNIVGVYGMGGIGKTTLVKEFARQASEEKLFDQVVFSEVSQ 87 (183)
Q Consensus 21 ~~~~~~~~~gR~~~l~~l~~~l~~~~~~~v~i~G~~G~GKTtL~~~~~~~~~~~~~~~~~~~~~~~~ 87 (183)
+...|.+..|.-...-.+...+.-...++|+|+|.+|+||||.+..+...+... -..+..+++..
T Consensus 22 ~~~~~~~~~~~~~~~~~~~~~~~i~~aKVIAIaGKGGVGKTTtavNLA~aLA~~--GkkVllID~Dp 86 (314)
T 3fwy_A 22 DLTIPTGADGEGSVQVHLDEADKITGAKVFAVYGKGGIGKSTTSSNLSAAFSIL--GKRVLQIGCDP 86 (314)
T ss_dssp -------------------------CCEEEEEECSTTSSHHHHHHHHHHHHHHT--TCCEEEEEESS
T ss_pred cCCCCCCCCCCcccccccCcccCCCCceEEEEECCCccCHHHHHHHHHHHHHHC--CCeEEEEecCC
Confidence 334444444444444444433333456899999999999999999999988875 33577777764
No 212
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=97.50 E-value=0.0017 Score=53.23 Aligned_cols=29 Identities=28% Similarity=0.384 Sum_probs=24.0
Q ss_pred CccEEEEEeCCCCcHHHHHHHHHhHHhhh
Q 035585 46 NVNIVGVYGMGGIGKTTLVKEFARQASEE 74 (183)
Q Consensus 46 ~~~~v~i~G~~G~GKTtL~~~~~~~~~~~ 74 (183)
++.+|+|+|.+|+||||++..++..+...
T Consensus 100 ~~~vI~ivG~~GvGKTTl~~kLA~~l~~~ 128 (504)
T 2j37_W 100 KQNVIMFVGLQGSGKTTTCSKLAYYYQRK 128 (504)
T ss_dssp --EEEEEECSTTSSHHHHHHHHHHHHHHT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhC
Confidence 35689999999999999999999877653
No 213
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=97.50 E-value=5.6e-05 Score=55.16 Aligned_cols=26 Identities=31% Similarity=0.533 Sum_probs=23.1
Q ss_pred CccEEEEEeCCCCcHHHHHHHHHhHH
Q 035585 46 NVNIVGVYGMGGIGKTTLVKEFARQA 71 (183)
Q Consensus 46 ~~~~v~i~G~~G~GKTtL~~~~~~~~ 71 (183)
+..+++|+|++|+|||||++.+...+
T Consensus 22 ~G~~~~lvGpsGsGKSTLl~~L~g~~ 47 (218)
T 1z6g_A 22 NIYPLVICGPSGVGKGTLIKKLLNEF 47 (218)
T ss_dssp CCCCEEEECSTTSSHHHHHHHHHHHS
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhC
Confidence 44689999999999999999998865
No 214
>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=97.50 E-value=2.6e-05 Score=65.28 Aligned_cols=28 Identities=32% Similarity=0.310 Sum_probs=23.5
Q ss_pred CCccEEEEEeCCCCcHHHHHHHHHhHHh
Q 035585 45 VNVNIVGVYGMGGIGKTTLVKEFARQAS 72 (183)
Q Consensus 45 ~~~~~v~i~G~~G~GKTtL~~~~~~~~~ 72 (183)
.+...++|+|++|+|||||++.+...+.
T Consensus 379 ~~G~~~~ivG~sGsGKSTll~~l~g~~~ 406 (598)
T 3qf4_B 379 KPGQKVALVGPTGSGKTTIVNLLMRFYD 406 (598)
T ss_dssp CTTCEEEEECCTTSSTTHHHHHHTTSSC
T ss_pred cCCCEEEEECCCCCcHHHHHHHHhcCcC
Confidence 3457899999999999999999976543
No 215
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=97.49 E-value=7.8e-05 Score=52.76 Aligned_cols=26 Identities=27% Similarity=0.232 Sum_probs=22.6
Q ss_pred ccEEEEEeCCCCcHHHHHHHHHhHHh
Q 035585 47 VNIVGVYGMGGIGKTTLVKEFARQAS 72 (183)
Q Consensus 47 ~~~v~i~G~~G~GKTtL~~~~~~~~~ 72 (183)
+..|+|.|++|+||||+++.+...+.
T Consensus 3 ~~~I~l~G~~GsGKsT~a~~L~~~~~ 28 (196)
T 1tev_A 3 PLVVFVLGGPGAGKGTQCARIVEKYG 28 (196)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHC
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHhC
Confidence 46799999999999999999887653
No 216
>1w36_D RECD, exodeoxyribonuclease V alpha chain; recombination, helicase, hydrolase, DNA repair; HET: DNA; 3.1A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19 PDB: 3k70_D*
Probab=97.49 E-value=8.8e-05 Score=62.24 Aligned_cols=48 Identities=17% Similarity=0.060 Sum_probs=32.4
Q ss_pred ccEEEEEeCCCCcHHHHHHHHHhHHhhhh-cccceEEEEecCCcCHHHH
Q 035585 47 VNIVGVYGMGGIGKTTLVKEFARQASEEK-LFDQVVFSEVSQTPDIKKI 94 (183)
Q Consensus 47 ~~~v~i~G~~G~GKTtL~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~ 94 (183)
.+.++|+|++|+||||++..+...+.... .....+.+.+++......+
T Consensus 164 ~~~~vi~G~pGTGKTt~l~~ll~~l~~~~~~~~~~vll~APTg~AA~~L 212 (608)
T 1w36_D 164 RRISVISGGPGTGKTTTVAKLLAALIQMADGERCRIRLAAPTGKAAARL 212 (608)
T ss_dssp BSEEEEECCTTSTHHHHHHHHHHHHHHTCSSCCCCEEEEBSSHHHHHHH
T ss_pred CCCEEEEeCCCCCHHHHHHHHHHHHHHhhhcCCCeEEEEeCChhHHHHH
Confidence 47899999999999999999887776421 1123455556665444333
No 217
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=97.49 E-value=6.9e-05 Score=53.11 Aligned_cols=22 Identities=32% Similarity=0.508 Sum_probs=20.1
Q ss_pred cEEEEEeCCCCcHHHHHHHHHh
Q 035585 48 NIVGVYGMGGIGKTTLVKEFAR 69 (183)
Q Consensus 48 ~~v~i~G~~G~GKTtL~~~~~~ 69 (183)
.+++|+|++|+||||+++.+..
T Consensus 3 ~ii~l~G~~GaGKSTl~~~L~~ 24 (189)
T 2bdt_A 3 KLYIITGPAGVGKSTTCKRLAA 24 (189)
T ss_dssp EEEEEECSTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCcHHHHHHHHhc
Confidence 4789999999999999999975
No 218
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=97.49 E-value=0.00034 Score=49.39 Aligned_cols=25 Identities=28% Similarity=0.462 Sum_probs=22.5
Q ss_pred EEEEEeCCCCcHHHHHHHHHhHHhh
Q 035585 49 IVGVYGMGGIGKTTLVKEFARQASE 73 (183)
Q Consensus 49 ~v~i~G~~G~GKTtL~~~~~~~~~~ 73 (183)
+++|.|++|+||||+++.+...+..
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~l~~ 26 (195)
T 2pbr_A 2 LIAFEGIDGSGKTTQAKKLYEYLKQ 26 (195)
T ss_dssp EEEEECSTTSCHHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHH
Confidence 5889999999999999999998754
No 219
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=97.48 E-value=7.1e-05 Score=53.86 Aligned_cols=28 Identities=14% Similarity=0.341 Sum_probs=24.1
Q ss_pred CCccEEEEEeCCCCcHHHHHHHHHhHHh
Q 035585 45 VNVNIVGVYGMGGIGKTTLVKEFARQAS 72 (183)
Q Consensus 45 ~~~~~v~i~G~~G~GKTtL~~~~~~~~~ 72 (183)
.+.++++|+||+|+|||||++.+.....
T Consensus 17 ~~g~~ivl~GPSGaGKsTL~~~L~~~~~ 44 (197)
T 3ney_A 17 QGRKTLVLIGASGVGRSHIKNALLSQNP 44 (197)
T ss_dssp CSCCEEEEECCTTSSHHHHHHHHHHHCT
T ss_pred CCCCEEEEECcCCCCHHHHHHHHHhhCC
Confidence 3557899999999999999999987654
No 220
>3ld9_A DTMP kinase, thymidylate kinase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ehrlich chaffeensis; 2.15A {Ehrlichia chaffeensis}
Probab=97.48 E-value=0.0011 Score=48.64 Aligned_cols=57 Identities=18% Similarity=0.105 Sum_probs=36.9
Q ss_pred hccCCccEEEEEeCCCCcHHHHHHHHHhHHhh-hhcccceEE-EEecCCcCHHHHHHHHHH
Q 035585 42 LTDVNVNIVGVYGMGGIGKTTLVKEFARQASE-EKLFDQVVF-SEVSQTPDIKKIHGEIAE 100 (183)
Q Consensus 42 l~~~~~~~v~i~G~~G~GKTtL~~~~~~~~~~-~~~~~~~~~-~~~~~~~~~~~~~~~i~~ 100 (183)
....+...|.+.|..|+||||+++.+...+.. .. + .+.. ..-+.+...-+..+.++.
T Consensus 16 ~~~~~~~~i~~~G~~g~GKst~~~~l~~~l~~~~g-~-~v~~~treP~~t~~g~~ir~~l~ 74 (223)
T 3ld9_A 16 TQGPGSMFITFEGIDGSGKTTQSHLLAEYLSEIYG-V-NNVVLTREPGGTLLNESVRNLLF 74 (223)
T ss_dssp ---CCCEEEEEECSTTSSHHHHHHHHHHHHHHHHC-G-GGEEEEESSCSSHHHHHHHHHHH
T ss_pred ccCCCCeEEEEECCCCCCHHHHHHHHHHHHhhccC-c-eeeEeeeCCCCChHHHHHHHHHh
Confidence 33455678999999999999999999999876 42 2 2333 444444444444445544
No 221
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=97.48 E-value=7.7e-05 Score=55.71 Aligned_cols=25 Identities=24% Similarity=0.348 Sum_probs=22.1
Q ss_pred cEEEEEeCCCCcHHHHHHHHHhHHh
Q 035585 48 NIVGVYGMGGIGKTTLVKEFARQAS 72 (183)
Q Consensus 48 ~~v~i~G~~G~GKTtL~~~~~~~~~ 72 (183)
.+++|+|++|+|||||++.++..+.
T Consensus 2 ~li~I~G~~GSGKSTla~~La~~~~ 26 (253)
T 2ze6_A 2 LLHLIYGPTCSGKTDMAIQIAQETG 26 (253)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHC
T ss_pred eEEEEECCCCcCHHHHHHHHHhcCC
Confidence 4789999999999999999987654
No 222
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=97.48 E-value=8.4e-05 Score=52.37 Aligned_cols=26 Identities=27% Similarity=0.271 Sum_probs=22.5
Q ss_pred ccEEEEEeCCCCcHHHHHHHHHhHHh
Q 035585 47 VNIVGVYGMGGIGKTTLVKEFARQAS 72 (183)
Q Consensus 47 ~~~v~i~G~~G~GKTtL~~~~~~~~~ 72 (183)
...++|.|++|+||||+++.+...+.
T Consensus 4 g~~I~l~G~~GsGKST~~~~La~~l~ 29 (186)
T 3cm0_A 4 GQAVIFLGPPGAGKGTQASRLAQELG 29 (186)
T ss_dssp EEEEEEECCTTSCHHHHHHHHHHHHT
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhC
Confidence 35789999999999999999987653
No 223
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=97.48 E-value=0.00044 Score=63.84 Aligned_cols=87 Identities=21% Similarity=0.260 Sum_probs=54.5
Q ss_pred CccEEEEEeCCCCcHHHHHHHHHhHHhhhhcccceEEEEecCCcCHHHHHHHHHHHhCCCchh------HHHHHHHHHHH
Q 035585 46 NVNIVGVYGMGGIGKTTLVKEFARQASEEKLFDQVVFSEVSQTPDIKKIHGEIAEKLGLEFSE------EAESRRASRLY 119 (183)
Q Consensus 46 ~~~~v~i~G~~G~GKTtL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~------~~~~~~~~~~~ 119 (183)
+..++.|+|++|+|||||+.+++...... -..++|++........ . ++.++..... .........+.
T Consensus 731 ~G~lVlI~G~PG~GKTtLal~lA~~aa~~--g~~VlyiS~Ees~~ql--~---A~~lGvd~~~L~i~~~~~leei~~~l~ 803 (1706)
T 3cmw_A 731 MGRIVEIYGPESSGKTTLTLQVIAAAQRE--GKTCAFIDAEHALDPI--Y---ARKLGVDIDNLLCSQPDTGEQALEICD 803 (1706)
T ss_dssp TTSEEEEECSTTSSHHHHHHHHHHHHHHT--TCCEEEECTTSCCCHH--H---HHHTTCCGGGCEEECCSSHHHHHHHHH
T ss_pred CCceEEEECCCCCCcHHHHHHHHHHHHHc--CCCeEEEeccchHHHH--H---HHHcCCChhheEEecCCcHHHHHHHHH
Confidence 44689999999999999999999887653 3357887776654432 1 4444432111 11222223333
Q ss_pred HHHhcCCeEEEEEeCCCCcc
Q 035585 120 ERLKKEKMILVILDNIWKYL 139 (183)
Q Consensus 120 ~~~~~~~~~llvlD~~~~~~ 139 (183)
....+.+.-+||+|.++.+.
T Consensus 804 ~lv~~~~~~lVVIDsLq~l~ 823 (1706)
T 3cmw_A 804 ALARSGAVDVIVVDSVAALT 823 (1706)
T ss_dssp HHHHHTCCSEEEESCSTTCC
T ss_pred HHHHccCCCEEEEechhhhc
Confidence 33334677899999987553
No 224
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=97.48 E-value=0.00021 Score=52.99 Aligned_cols=27 Identities=19% Similarity=0.091 Sum_probs=23.5
Q ss_pred CCccEEEEEeCCCCcHHHHHHHHHhHH
Q 035585 45 VNVNIVGVYGMGGIGKTTLVKEFARQA 71 (183)
Q Consensus 45 ~~~~~v~i~G~~G~GKTtL~~~~~~~~ 71 (183)
.++..|+|.|++|+||||+++.+...+
T Consensus 27 ~~~~~I~l~G~~GsGKsT~a~~L~~~~ 53 (243)
T 3tlx_A 27 KPDGRYIFLGAPGSGKGTQSLNLKKSH 53 (243)
T ss_dssp SCCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHh
Confidence 355689999999999999999998765
No 225
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=97.47 E-value=9e-05 Score=57.13 Aligned_cols=29 Identities=24% Similarity=0.287 Sum_probs=25.4
Q ss_pred CCccEEEEEeCCCCcHHHHHHHHHhHHhh
Q 035585 45 VNVNIVGVYGMGGIGKTTLVKEFARQASE 73 (183)
Q Consensus 45 ~~~~~v~i~G~~G~GKTtL~~~~~~~~~~ 73 (183)
.+..+++|.|++|+|||||++.+...+..
T Consensus 88 ~~g~ivgI~G~sGsGKSTL~~~L~gll~~ 116 (312)
T 3aez_A 88 PVPFIIGVAGSVAVGKSTTARVLQALLAR 116 (312)
T ss_dssp CCCEEEEEECCTTSCHHHHHHHHHHHHHT
T ss_pred CCCEEEEEECCCCchHHHHHHHHHhhccc
Confidence 45578999999999999999999988765
No 226
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=97.47 E-value=8.3e-05 Score=54.12 Aligned_cols=24 Identities=33% Similarity=0.505 Sum_probs=21.8
Q ss_pred cEEEEEeCCCCcHHHHHHHHHhHH
Q 035585 48 NIVGVYGMGGIGKTTLVKEFARQA 71 (183)
Q Consensus 48 ~~v~i~G~~G~GKTtL~~~~~~~~ 71 (183)
..++|+|++|+||||+++.+...+
T Consensus 6 ~~i~i~G~~GsGKSTl~~~L~~~~ 29 (227)
T 1cke_A 6 PVITIDGPSGAGKGTLCKAMAEAL 29 (227)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 579999999999999999998765
No 227
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=97.47 E-value=0.00014 Score=55.82 Aligned_cols=28 Identities=25% Similarity=0.418 Sum_probs=24.3
Q ss_pred CccEEEEEeCCCCcHHHHHHHHHhHHhh
Q 035585 46 NVNIVGVYGMGGIGKTTLVKEFARQASE 73 (183)
Q Consensus 46 ~~~~v~i~G~~G~GKTtL~~~~~~~~~~ 73 (183)
+..+++|+|++|+||||+++.++..+..
T Consensus 99 ~g~vi~lvG~nGsGKTTll~~Lag~l~~ 126 (302)
T 3b9q_A 99 KPAVIMIVGVNGGGKTTSLGKLAHRLKN 126 (302)
T ss_dssp SCEEEEEECCTTSCHHHHHHHHHHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHHHH
Confidence 3468999999999999999999887754
No 228
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=97.47 E-value=0.00018 Score=52.18 Aligned_cols=41 Identities=20% Similarity=0.243 Sum_probs=30.7
Q ss_pred HHHHHHHHHhccCCccEEEEEeCCCCcHHHHHHHHHhHHhh
Q 035585 33 STLKSIQDALTDVNVNIVGVYGMGGIGKTTLVKEFARQASE 73 (183)
Q Consensus 33 ~~l~~l~~~l~~~~~~~v~i~G~~G~GKTtL~~~~~~~~~~ 73 (183)
+..+.+...+...+...++|+|.+|+|||||+..+......
T Consensus 24 ~~a~~~r~~~~~~~~~~i~ivG~~gvGKTtl~~~l~~~~~~ 64 (226)
T 2hf9_A 24 RLADKNRKLLNKHGVVAFDFMGAIGSGKTLLIEKLIDNLKD 64 (226)
T ss_dssp HHHHHHHHHHHHTTCEEEEEEESTTSSHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHhCCCeEEEEEcCCCCCHHHHHHHHHHHhcc
Confidence 34444555444456788999999999999999999887644
No 229
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=97.47 E-value=0.00085 Score=53.82 Aligned_cols=40 Identities=20% Similarity=0.199 Sum_probs=30.7
Q ss_pred CccEEEEEeCCCCcHHHHHHHHHhHHhhhhcccceEEEEecC
Q 035585 46 NVNIVGVYGMGGIGKTTLVKEFARQASEEKLFDQVVFSEVSQ 87 (183)
Q Consensus 46 ~~~~v~i~G~~G~GKTtL~~~~~~~~~~~~~~~~~~~~~~~~ 87 (183)
++.+++++|++|+||||++..++..+... -..+..+.+..
T Consensus 97 ~~~vi~i~G~~GsGKTT~~~~LA~~l~~~--g~~Vllvd~D~ 136 (425)
T 2ffh_A 97 DRNLWFLVGLQGSGKTTTAAKLALYYKGK--GRRPLLVAADT 136 (425)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHHHTT--TCCEEEEECCS
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHc--CCeEEEeeccc
Confidence 35689999999999999999999888754 33455655543
No 230
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=97.46 E-value=0.00018 Score=54.02 Aligned_cols=112 Identities=16% Similarity=0.145 Sum_probs=57.7
Q ss_pred CCccEEEEEeCCCCcHHHHHHHHHhHHhhhhcccc-eEEEEecCCcCHHHHHHHHH--HHhCCCchhHHHHHHHHHHHHH
Q 035585 45 VNVNIVGVYGMGGIGKTTLVKEFARQASEEKLFDQ-VVFSEVSQTPDIKKIHGEIA--EKLGLEFSEEAESRRASRLYER 121 (183)
Q Consensus 45 ~~~~~v~i~G~~G~GKTtL~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~i~--~~l~~~~~~~~~~~~~~~~~~~ 121 (183)
.+..+++|+|++|+|||||++.+...+... ..+ +.+...+-..-.... ..+. ..++... ......+...
T Consensus 23 ~~g~~v~i~Gp~GsGKSTll~~l~g~~~~~--~~G~I~~~g~~i~~~~~~~-~~~v~q~~~gl~~-----~~l~~~la~a 94 (261)
T 2eyu_A 23 RKMGLILVTGPTGSGKSTTIASMIDYINQT--KSYHIITIEDPIEYVFKHK-KSIVNQREVGEDT-----KSFADALRAA 94 (261)
T ss_dssp CSSEEEEEECSTTCSHHHHHHHHHHHHHHH--CCCEEEEEESSCCSCCCCS-SSEEEEEEBTTTB-----SCHHHHHHHH
T ss_pred CCCCEEEEECCCCccHHHHHHHHHHhCCCC--CCCEEEEcCCcceeecCCc-ceeeeHHHhCCCH-----HHHHHHHHHH
Confidence 455799999999999999999998877543 122 222221100000000 0000 0011110 0112233344
Q ss_pred HhcCCeEEEEEeCCCCcccccccCcCCCCCCCCcEEEEEecChHHHh
Q 035585 122 LKKEKMILVILDNIWKYLDLETVGIPFGDDHRGCKLLLTARDCNVLL 168 (183)
Q Consensus 122 ~~~~~~~llvlD~~~~~~~~~~l~~~~~~~~~~~~iiitsr~~~~~~ 168 (183)
+. .++-+|++||+.+......+... ...|..+++|+|+.+...
T Consensus 95 L~-~~p~illlDEp~D~~~~~~~l~~---~~~g~~vl~t~H~~~~~~ 137 (261)
T 2eyu_A 95 LR-EDPDVIFVGEMRDLETVETALRA---AETGHLVFGTLHTNTAID 137 (261)
T ss_dssp HH-HCCSEEEESCCCSHHHHHHHHHH---HHTTCEEEEEECCSSHHH
T ss_pred Hh-hCCCEEEeCCCCCHHHHHHHHHH---HccCCEEEEEeCcchHHH
Confidence 44 46778999999744333222222 123667899999876543
No 231
>3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A
Probab=97.46 E-value=0.00016 Score=57.22 Aligned_cols=94 Identities=14% Similarity=0.127 Sum_probs=49.9
Q ss_pred CCccEEEEEeCCCCcHHHHHHHHHhHHhhhhcccceEEEEecCCc-CHHHHHHHHHHHh----CCCchhHH--HHHHHHH
Q 035585 45 VNVNIVGVYGMGGIGKTTLVKEFARQASEEKLFDQVVFSEVSQTP-DIKKIHGEIAEKL----GLEFSEEA--ESRRASR 117 (183)
Q Consensus 45 ~~~~~v~i~G~~G~GKTtL~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~i~~~l----~~~~~~~~--~~~~~~~ 117 (183)
.+.+.++|+|++|+|||||++.+......+..-..++|+-+.... ...++.+.+-..+ ....+... .......
T Consensus 172 ~rGQr~~IvG~sG~GKTtLl~~Iar~i~~~~~~v~~I~~lIGER~~Ev~~~~~~~~~~vV~atadep~~~r~~~a~~alt 251 (422)
T 3ice_A 172 GRGQRGLIVAPPKAGKTMLLQNIAQSIAYNHPDCVLMVLLIDERPEEVTEMQRLVKGEVVASTFDEPASRHVQVAEMVIE 251 (422)
T ss_dssp BTTCEEEEECCSSSSHHHHHHHHHHHHHHHCTTSEEEEEEESSCHHHHHHHHTTCSSEEEEECTTSCHHHHHHHHHHHHH
T ss_pred cCCcEEEEecCCCCChhHHHHHHHHHHhhcCCCeeEEEEEecCChHHHHHHHHHhCeEEEEeCCCCCHHHHHHHHHHHHH
Confidence 455789999999999999999988876554212234555444332 2222222220000 00111110 1111122
Q ss_pred HHHHHh-cCCeEEEEEeCCCCc
Q 035585 118 LYERLK-KEKMILVILDNIWKY 138 (183)
Q Consensus 118 ~~~~~~-~~~~~llvlD~~~~~ 138 (183)
.-++++ +++.++|++|++...
T Consensus 252 ~AEyfrd~G~dVLil~DslTR~ 273 (422)
T 3ice_A 252 KAKRLVEHKKDVIILLDSITRL 273 (422)
T ss_dssp HHHHHHHTSCEEEEEEECHHHH
T ss_pred HHHHHHhcCCCEEEEEeCchHH
Confidence 233443 478999999997643
No 232
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=97.46 E-value=7.5e-05 Score=62.60 Aligned_cols=54 Identities=19% Similarity=0.147 Sum_probs=44.0
Q ss_pred hhhcCCCcccccchHHHHHHHHHHhccCCccEEEEEeCCCCcHHHHHHHHHhHHhh
Q 035585 18 WLKSNKGYEAFKSRLSTLKSIQDALTDVNVNIVGVYGMGGIGKTTLVKEFARQASE 73 (183)
Q Consensus 18 ~~~~~~~~~~~~gR~~~l~~l~~~l~~~~~~~v~i~G~~G~GKTtL~~~~~~~~~~ 73 (183)
...++.....++|.+..++.+...+... ..++|+|++|+|||||++.++..+..
T Consensus 33 ~~~rp~~l~~i~G~~~~l~~l~~~i~~g--~~vll~Gp~GtGKTtlar~ia~~l~~ 86 (604)
T 3k1j_A 33 IEVPEKLIDQVIGQEHAVEVIKTAANQK--RHVLLIGEPGTGKSMLGQAMAELLPT 86 (604)
T ss_dssp SCCCSSHHHHCCSCHHHHHHHHHHHHTT--CCEEEECCTTSSHHHHHHHHHHTSCC
T ss_pred ccccccccceEECchhhHhhccccccCC--CEEEEEeCCCCCHHHHHHHHhccCCc
Confidence 3445566677899999998888877544 68999999999999999999987754
No 233
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=97.45 E-value=8e-05 Score=55.06 Aligned_cols=26 Identities=23% Similarity=0.379 Sum_probs=22.4
Q ss_pred CccEEEEEeCCCCcHHHHHHHHHhHH
Q 035585 46 NVNIVGVYGMGGIGKTTLVKEFARQA 71 (183)
Q Consensus 46 ~~~~v~i~G~~G~GKTtL~~~~~~~~ 71 (183)
+..+++|+|++|+|||||++.+...+
T Consensus 30 ~Ge~~~iiG~nGsGKSTLl~~l~Gl~ 55 (235)
T 3tif_A 30 EGEFVSIMGPSGSGKSTMLNIIGCLD 55 (235)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCcHHHHHHHHhcCC
Confidence 45789999999999999999997544
No 234
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=97.45 E-value=0.00014 Score=66.12 Aligned_cols=28 Identities=25% Similarity=0.348 Sum_probs=23.8
Q ss_pred CCccEEEEEeCCCCcHHHHHHHHHhHHh
Q 035585 45 VNVNIVGVYGMGGIGKTTLVKEFARQAS 72 (183)
Q Consensus 45 ~~~~~v~i~G~~G~GKTtL~~~~~~~~~ 72 (183)
.+...++|+|++|+|||||++.+...+.
T Consensus 442 ~~G~~vaivG~sGsGKSTll~ll~~~~~ 469 (1321)
T 4f4c_A 442 NAGQTVALVGSSGCGKSTIISLLLRYYD 469 (1321)
T ss_dssp CTTCEEEEEECSSSCHHHHHHHHTTSSC
T ss_pred cCCcEEEEEecCCCcHHHHHHHhccccc
Confidence 3457899999999999999999987654
No 235
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=97.44 E-value=0.0001 Score=52.40 Aligned_cols=26 Identities=23% Similarity=0.330 Sum_probs=23.0
Q ss_pred ccEEEEEeCCCCcHHHHHHHHHhHHh
Q 035585 47 VNIVGVYGMGGIGKTTLVKEFARQAS 72 (183)
Q Consensus 47 ~~~v~i~G~~G~GKTtL~~~~~~~~~ 72 (183)
+.+|+|.|++|+||||+++.+...+.
T Consensus 12 ~~~I~l~G~~GsGKsT~a~~L~~~l~ 37 (199)
T 2bwj_A 12 CKIIFIIGGPGSGKGTQCEKLVEKYG 37 (199)
T ss_dssp SCEEEEEECTTSSHHHHHHHHHHHHT
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHhC
Confidence 36899999999999999999988764
No 236
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=97.43 E-value=0.00037 Score=53.49 Aligned_cols=28 Identities=21% Similarity=0.239 Sum_probs=24.7
Q ss_pred CCccEEEEEeCCCCcHHHHHHHHHhHHh
Q 035585 45 VNVNIVGVYGMGGIGKTTLVKEFARQAS 72 (183)
Q Consensus 45 ~~~~~v~i~G~~G~GKTtL~~~~~~~~~ 72 (183)
.+..+++|.|++|+|||||++.+...+.
T Consensus 78 ~~g~iigI~G~~GsGKSTl~~~L~~~l~ 105 (308)
T 1sq5_A 78 RIPYIISIAGSVAVGKSTTARVLQALLS 105 (308)
T ss_dssp CCCEEEEEEECTTSSHHHHHHHHHHHHT
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHh
Confidence 4557999999999999999999988765
No 237
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=97.43 E-value=7.1e-05 Score=53.37 Aligned_cols=26 Identities=27% Similarity=0.450 Sum_probs=22.2
Q ss_pred cEEEEEeCCCCcHHHHHHHHHhHHhh
Q 035585 48 NIVGVYGMGGIGKTTLVKEFARQASE 73 (183)
Q Consensus 48 ~~v~i~G~~G~GKTtL~~~~~~~~~~ 73 (183)
+.|+|+||+|+|||||++.+..+...
T Consensus 2 RpIVi~GPSG~GK~Tl~~~L~~~~~~ 27 (186)
T 1ex7_A 2 RPIVISGPSGTGKSTLLKKLFAEYPD 27 (186)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHHCTT
T ss_pred CEEEEECCCCCCHHHHHHHHHHhCCC
Confidence 45889999999999999999877543
No 238
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=97.43 E-value=7.7e-05 Score=52.46 Aligned_cols=27 Identities=30% Similarity=0.409 Sum_probs=24.5
Q ss_pred cEEEEEeCCCCcHHHHHHHHHhHHhhh
Q 035585 48 NIVGVYGMGGIGKTTLVKEFARQASEE 74 (183)
Q Consensus 48 ~~v~i~G~~G~GKTtL~~~~~~~~~~~ 74 (183)
..++|+|++|+|||||++.+...+...
T Consensus 3 ~~v~IvG~SGsGKSTL~~~L~~~~~~~ 29 (171)
T 2f1r_A 3 LILSIVGTSDSGKTTLITRMMPILRER 29 (171)
T ss_dssp CEEEEEESCHHHHHHHHHHHHHHHHHT
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhhhc
Confidence 578999999999999999999988764
No 239
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=97.43 E-value=0.00011 Score=52.74 Aligned_cols=28 Identities=14% Similarity=0.208 Sum_probs=24.4
Q ss_pred ccEEEEEeCCCCcHHHHHHHHHhHHhhh
Q 035585 47 VNIVGVYGMGGIGKTTLVKEFARQASEE 74 (183)
Q Consensus 47 ~~~v~i~G~~G~GKTtL~~~~~~~~~~~ 74 (183)
...|+|.|++|+||||+++.+...+...
T Consensus 4 ~~~I~i~G~~GsGKsT~~~~L~~~l~~~ 31 (213)
T 2plr_A 4 GVLIAFEGIDGSGKSSQATLLKDWIELK 31 (213)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHTTT
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHHHhhc
Confidence 3579999999999999999999887653
No 240
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=97.43 E-value=9.5e-05 Score=51.75 Aligned_cols=25 Identities=28% Similarity=0.462 Sum_probs=22.0
Q ss_pred cEEEEEeCCCCcHHHHHHHHHhHHh
Q 035585 48 NIVGVYGMGGIGKTTLVKEFARQAS 72 (183)
Q Consensus 48 ~~v~i~G~~G~GKTtL~~~~~~~~~ 72 (183)
..++|.|++|+||||+++.+...+.
T Consensus 5 ~~i~i~G~~GsGKsTla~~La~~l~ 29 (175)
T 1via_A 5 KNIVFIGFMGSGKSTLARALAKDLD 29 (175)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHHHT
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHcC
Confidence 3689999999999999999988764
No 241
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=97.42 E-value=8.5e-05 Score=52.34 Aligned_cols=25 Identities=24% Similarity=0.396 Sum_probs=22.1
Q ss_pred cEEEEEeCCCCcHHHHHHHHHhHHh
Q 035585 48 NIVGVYGMGGIGKTTLVKEFARQAS 72 (183)
Q Consensus 48 ~~v~i~G~~G~GKTtL~~~~~~~~~ 72 (183)
..|+|+|++|+||||+++.+...+.
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~~lg 27 (184)
T 2iyv_A 3 PKAVLVGLPGSGKSTIGRRLAKALG 27 (184)
T ss_dssp CSEEEECSTTSSHHHHHHHHHHHHT
T ss_pred CeEEEECCCCCCHHHHHHHHHHHcC
Confidence 4689999999999999999988764
No 242
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=97.42 E-value=9.5e-05 Score=54.86 Aligned_cols=27 Identities=19% Similarity=0.250 Sum_probs=23.3
Q ss_pred CCccEEEEEeCCCCcHHHHHHHHHhHHh
Q 035585 45 VNVNIVGVYGMGGIGKTTLVKEFARQAS 72 (183)
Q Consensus 45 ~~~~~v~i~G~~G~GKTtL~~~~~~~~~ 72 (183)
.+ .+++|.|++|+|||||++.+.....
T Consensus 23 ~~-e~~~liG~nGsGKSTLl~~l~Gl~~ 49 (240)
T 2onk_A 23 GR-DYCVLLGPTGAGKSVFLELIAGIVK 49 (240)
T ss_dssp CS-SEEEEECCTTSSHHHHHHHHHTSSC
T ss_pred CC-EEEEEECCCCCCHHHHHHHHhCCCC
Confidence 35 8899999999999999999986553
No 243
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=97.41 E-value=0.00012 Score=51.83 Aligned_cols=25 Identities=24% Similarity=0.303 Sum_probs=22.3
Q ss_pred CccEEEEEeCCCCcHHHHHHHHHhH
Q 035585 46 NVNIVGVYGMGGIGKTTLVKEFARQ 70 (183)
Q Consensus 46 ~~~~v~i~G~~G~GKTtL~~~~~~~ 70 (183)
+...++|+|++|+||||+++.+...
T Consensus 9 ~~~~I~l~G~~GsGKSTv~~~La~~ 33 (184)
T 1y63_A 9 KGINILITGTPGTGKTSMAEMIAAE 33 (184)
T ss_dssp SSCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHh
Confidence 4568999999999999999999886
No 244
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=97.41 E-value=0.00011 Score=52.57 Aligned_cols=26 Identities=27% Similarity=0.414 Sum_probs=22.8
Q ss_pred CccEEEEEeCCCCcHHHHHHHHHhHH
Q 035585 46 NVNIVGVYGMGGIGKTTLVKEFARQA 71 (183)
Q Consensus 46 ~~~~v~i~G~~G~GKTtL~~~~~~~~ 71 (183)
++..|+|.|++|+||||+++.+...+
T Consensus 14 ~~~~I~l~G~~GsGKsT~~~~L~~~~ 39 (203)
T 1ukz_A 14 QVSVIFVLGGPGAGKGTQCEKLVKDY 39 (203)
T ss_dssp TCEEEEEECSTTSSHHHHHHHHHHHS
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHc
Confidence 45689999999999999999998764
No 245
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=97.40 E-value=0.00012 Score=53.19 Aligned_cols=27 Identities=19% Similarity=0.171 Sum_probs=23.3
Q ss_pred CccEEEEEeCCCCcHHHHHHHHHhHHh
Q 035585 46 NVNIVGVYGMGGIGKTTLVKEFARQAS 72 (183)
Q Consensus 46 ~~~~v~i~G~~G~GKTtL~~~~~~~~~ 72 (183)
+...++|.|++|+||||+++.+...+.
T Consensus 3 ~~~~I~l~G~~GsGKsT~a~~La~~l~ 29 (220)
T 1aky_A 3 ESIRMVLIGPPGAGKGTQAPNLQERFH 29 (220)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHHC
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHcC
Confidence 346799999999999999999988754
No 246
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=97.40 E-value=0.00013 Score=52.36 Aligned_cols=28 Identities=18% Similarity=0.187 Sum_probs=24.7
Q ss_pred ccEEEEEeCCCCcHHHHHHHHHhHHhhh
Q 035585 47 VNIVGVYGMGGIGKTTLVKEFARQASEE 74 (183)
Q Consensus 47 ~~~v~i~G~~G~GKTtL~~~~~~~~~~~ 74 (183)
...|+|.|++|+||||+++.+...+...
T Consensus 10 ~~~I~l~G~~GsGKST~~~~L~~~l~~~ 37 (212)
T 2wwf_A 10 GKFIVFEGLDRSGKSTQSKLLVEYLKNN 37 (212)
T ss_dssp SCEEEEEESTTSSHHHHHHHHHHHHHHT
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHHHHHc
Confidence 4689999999999999999999887654
No 247
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=97.40 E-value=0.00013 Score=51.57 Aligned_cols=26 Identities=35% Similarity=0.359 Sum_probs=22.7
Q ss_pred ccEEEEEeCCCCcHHHHHHHHHhHHh
Q 035585 47 VNIVGVYGMGGIGKTTLVKEFARQAS 72 (183)
Q Consensus 47 ~~~v~i~G~~G~GKTtL~~~~~~~~~ 72 (183)
+.+++|.|++|+||||+++.+...+.
T Consensus 6 ~~~I~l~G~~GsGKsT~~~~L~~~l~ 31 (194)
T 1qf9_A 6 PNVVFVLGGPGSGKGTQCANIVRDFG 31 (194)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHHHC
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHhC
Confidence 36899999999999999999988653
No 248
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=97.40 E-value=0.00019 Score=51.85 Aligned_cols=42 Identities=21% Similarity=0.281 Sum_probs=31.1
Q ss_pred HHHHHHHHHHhccCCccEEEEEeCCCCcHHHHHHHHHhHHhh
Q 035585 32 LSTLKSIQDALTDVNVNIVGVYGMGGIGKTTLVKEFARQASE 73 (183)
Q Consensus 32 ~~~l~~l~~~l~~~~~~~v~i~G~~G~GKTtL~~~~~~~~~~ 73 (183)
.+..+.+...+...+.+.++|+|.+|+|||||+..+......
T Consensus 15 ~~~~~~~~~~~~~~~~~~i~i~G~~g~GKTTl~~~l~~~~~~ 56 (221)
T 2wsm_A 15 KRLAEKNREALRESGTVAVNIMGAIGSGKTLLIERTIERIGN 56 (221)
T ss_dssp HHHHHHHHHHHHHHTCEEEEEEECTTSCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHhhcccCceEEEEEcCCCCCHHHHHHHHHHHhcc
Confidence 344444455444456789999999999999999999887643
No 249
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=97.40 E-value=0.0001 Score=52.71 Aligned_cols=25 Identities=32% Similarity=0.385 Sum_probs=22.5
Q ss_pred cEEEEEeCCCCcHHHHHHHHHhHHh
Q 035585 48 NIVGVYGMGGIGKTTLVKEFARQAS 72 (183)
Q Consensus 48 ~~v~i~G~~G~GKTtL~~~~~~~~~ 72 (183)
..++|+|++|+|||||++.++..+.
T Consensus 2 ~~i~i~G~nG~GKTTll~~l~g~~~ 26 (189)
T 2i3b_A 2 RHVFLTGPPGVGKTTLIHKASEVLK 26 (189)
T ss_dssp CCEEEESCCSSCHHHHHHHHHHHHH
T ss_pred CEEEEECCCCChHHHHHHHHHhhcc
Confidence 3689999999999999999998875
No 250
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=97.40 E-value=0.00025 Score=53.88 Aligned_cols=40 Identities=23% Similarity=0.282 Sum_probs=30.5
Q ss_pred CCccEEEEEeCCCCcHHHHHHHHHhHHhhhhccc-ceEEEEec
Q 035585 45 VNVNIVGVYGMGGIGKTTLVKEFARQASEEKLFD-QVVFSEVS 86 (183)
Q Consensus 45 ~~~~~v~i~G~~G~GKTtL~~~~~~~~~~~~~~~-~~~~~~~~ 86 (183)
.+..+++|.|++|+|||||++.++...... .. .++|+...
T Consensus 33 ~~G~~~~i~G~~G~GKTTl~~~ia~~~~~~--~G~~v~~~~~e 73 (296)
T 1cr0_A 33 RGGEVIMVTSGSGMGKSTFVRQQALQWGTA--MGKKVGLAMLE 73 (296)
T ss_dssp CTTCEEEEEESTTSSHHHHHHHHHHHHHHT--SCCCEEEEESS
T ss_pred CCCeEEEEEeCCCCCHHHHHHHHHHHHHHH--cCCeEEEEeCc
Confidence 344799999999999999999999887654 22 46665543
No 251
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=97.39 E-value=0.00012 Score=52.22 Aligned_cols=24 Identities=25% Similarity=0.591 Sum_probs=21.7
Q ss_pred EEEEEeCCCCcHHHHHHHHHhHHh
Q 035585 49 IVGVYGMGGIGKTTLVKEFARQAS 72 (183)
Q Consensus 49 ~v~i~G~~G~GKTtL~~~~~~~~~ 72 (183)
.++|.|++|+||||+++.+...+.
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~~l~ 25 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISKKLG 25 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHC
T ss_pred EEEEECCCccCHHHHHHHHHHhcC
Confidence 588999999999999999988765
No 252
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=97.39 E-value=0.0012 Score=53.19 Aligned_cols=41 Identities=24% Similarity=0.289 Sum_probs=31.2
Q ss_pred CccEEEEEeCCCCcHHHHHHHHHhHHhhhhcccceEEEEecC
Q 035585 46 NVNIVGVYGMGGIGKTTLVKEFARQASEEKLFDQVVFSEVSQ 87 (183)
Q Consensus 46 ~~~~v~i~G~~G~GKTtL~~~~~~~~~~~~~~~~~~~~~~~~ 87 (183)
+++++.++|.+|+||||++..++..+..+ .-..+..+++..
T Consensus 99 ~~~vI~ivG~~GvGKTT~a~~LA~~l~~~-~G~kVllvd~D~ 139 (433)
T 2xxa_A 99 PPAVVLMAGLQGAGKTTSVGKLGKFLREK-HKKKVLVVSADV 139 (433)
T ss_dssp SSEEEEEECSTTSSHHHHHHHHHHHHHHT-SCCCEEEEECCC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHh-cCCeEEEEecCC
Confidence 45789999999999999999999888764 122356666654
No 253
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=97.39 E-value=0.00015 Score=52.13 Aligned_cols=28 Identities=14% Similarity=0.251 Sum_probs=24.8
Q ss_pred ccEEEEEeCCCCcHHHHHHHHHhHHhhh
Q 035585 47 VNIVGVYGMGGIGKTTLVKEFARQASEE 74 (183)
Q Consensus 47 ~~~v~i~G~~G~GKTtL~~~~~~~~~~~ 74 (183)
..+|+|.|++|+||||+++.+...+...
T Consensus 9 ~~~I~l~G~~GsGKsT~~~~L~~~l~~~ 36 (215)
T 1nn5_A 9 GALIVLEGVDRAGKSTQSRKLVEALCAA 36 (215)
T ss_dssp CCEEEEEESTTSSHHHHHHHHHHHHHHT
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHHc
Confidence 4689999999999999999999988654
No 254
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=97.38 E-value=0.00011 Score=52.93 Aligned_cols=26 Identities=35% Similarity=0.588 Sum_probs=22.8
Q ss_pred CccEEEEEeCCCCcHHHHHHHHHhHH
Q 035585 46 NVNIVGVYGMGGIGKTTLVKEFARQA 71 (183)
Q Consensus 46 ~~~~v~i~G~~G~GKTtL~~~~~~~~ 71 (183)
...+++|+|++|+||||+++.+...+
T Consensus 20 ~~~~i~i~G~~GsGKSTl~~~L~~~~ 45 (207)
T 2qt1_A 20 KTFIIGISGVTNSGKTTLAKNLQKHL 45 (207)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHTTS
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHhc
Confidence 34689999999999999999998764
No 255
>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E*
Probab=97.38 E-value=0.00016 Score=58.29 Aligned_cols=47 Identities=21% Similarity=0.346 Sum_probs=35.4
Q ss_pred cccchHHHHHHHHHHhcc--------------CCccEEEEEeCCCCcHHHHHHHHHhHHhh
Q 035585 27 AFKSRLSTLKSIQDALTD--------------VNVNIVGVYGMGGIGKTTLVKEFARQASE 73 (183)
Q Consensus 27 ~~~gR~~~l~~l~~~l~~--------------~~~~~v~i~G~~G~GKTtL~~~~~~~~~~ 73 (183)
.++|.+.....+..++.+ ..++.++++|++|+|||++++.++..+..
T Consensus 16 ~IvGqe~ak~~l~~av~~~~~r~~~~~~~~~~~~~~~iLl~GppGtGKT~lar~lA~~l~~ 76 (444)
T 1g41_A 16 HIIGQADAKRAVAIALRNRWRRMQLQEPLRHEVTPKNILMIGPTGVGKTEIARRLAKLANA 76 (444)
T ss_dssp TCCSCHHHHHHHHHHHHHHHHHHHSCTTTTTTCCCCCEEEECCTTSSHHHHHHHHHHHTTC
T ss_pred HhCCHHHHHHHHHHHHHHHHhhhccccccccccCCceEEEEcCCCCCHHHHHHHHHHHcCC
Confidence 457777777776655521 24567999999999999999999987643
No 256
>3hjn_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynth nucleotide-binding, transferase, structural genomics; HET: ADP TYD; 2.10A {Thermotoga maritima}
Probab=97.38 E-value=0.0029 Score=45.30 Aligned_cols=51 Identities=16% Similarity=0.229 Sum_probs=36.5
Q ss_pred EEEEEeCCCCcHHHHHHHHHhHHhhhhcccceEEEEecCCcCHHHHHHHHHHH
Q 035585 49 IVGVYGMGGIGKTTLVKEFARQASEEKLFDQVVFSEVSQTPDIKKIHGEIAEK 101 (183)
Q Consensus 49 ~v~i~G~~G~GKTtL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 101 (183)
.|++=|..|+||||.++.+.+.+... ...+.+..-+......+..+.++..
T Consensus 2 fI~~EG~DGsGKsTq~~~L~~~L~~~--g~~v~~treP~~t~~~~~ir~~l~~ 52 (197)
T 3hjn_A 2 FITFEGIDGSGKSTQIQLLAQYLEKR--GKKVILKREPGGTETGEKIRKILLE 52 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHHHT--TCCEEEEESSCSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHC--CCcEEEEECCCCCcHHHHHHHHhhc
Confidence 46778999999999999999999876 2345566666655555555555443
No 257
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=97.38 E-value=0.00015 Score=51.90 Aligned_cols=27 Identities=26% Similarity=0.226 Sum_probs=23.1
Q ss_pred CccEEEEEeCCCCcHHHHHHHHHhHHh
Q 035585 46 NVNIVGVYGMGGIGKTTLVKEFARQAS 72 (183)
Q Consensus 46 ~~~~v~i~G~~G~GKTtL~~~~~~~~~ 72 (183)
.+..|+|.|++|+||||+++.+...+.
T Consensus 19 ~~~~I~l~G~~GsGKST~a~~La~~l~ 45 (201)
T 2cdn_A 19 SHMRVLLLGPPGAGKGTQAVKLAEKLG 45 (201)
T ss_dssp SCCEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhC
Confidence 345799999999999999999988764
No 258
>1q57_A DNA primase/helicase; dntpase, DNA replication, transferase; HET: DNA; 3.45A {Enterobacteria phage T7} SCOP: c.37.1.11 e.13.1.2
Probab=97.38 E-value=0.0013 Score=53.80 Aligned_cols=42 Identities=17% Similarity=0.166 Sum_probs=31.6
Q ss_pred CccEEEEEeCCCCcHHHHHHHHHhHHhhhhcccceEEEEecCC
Q 035585 46 NVNIVGVYGMGGIGKTTLVKEFARQASEEKLFDQVVFSEVSQT 88 (183)
Q Consensus 46 ~~~~v~i~G~~G~GKTtL~~~~~~~~~~~~~~~~~~~~~~~~~ 88 (183)
+..++.|.|++|+|||+|+.+++...... .-..++|+.....
T Consensus 241 ~G~l~li~G~pG~GKT~lal~~a~~~a~~-~g~~vl~~s~E~s 282 (503)
T 1q57_A 241 GGEVIMVTSGSGMVMSTFVRQQALQWGTA-MGKKVGLAMLEES 282 (503)
T ss_dssp TTCEEEEEESSCHHHHHHHHHHHHHHTTT-SCCCEEEEESSSC
T ss_pred CCeEEEEeecCCCCchHHHHHHHHHHHHh-cCCcEEEEeccCC
Confidence 34689999999999999999999877653 1235777766543
No 259
>3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1}
Probab=97.38 E-value=0.0014 Score=52.92 Aligned_cols=40 Identities=23% Similarity=0.238 Sum_probs=31.6
Q ss_pred CccEEEEEeCCCCcHHHHHHHHHhHHhhhhcccceEEEEecC
Q 035585 46 NVNIVGVYGMGGIGKTTLVKEFARQASEEKLFDQVVFSEVSQ 87 (183)
Q Consensus 46 ~~~~v~i~G~~G~GKTtL~~~~~~~~~~~~~~~~~~~~~~~~ 87 (183)
+..++.|.|++|+|||+|+.+++.....+ -..++|+...-
T Consensus 196 ~G~liiIaG~pG~GKTtlal~ia~~~a~~--g~~vl~fSlEm 235 (444)
T 3bgw_A 196 RRNFVLIAARPSMGKTAFALKQAKNMSDN--DDVVNLHSLEM 235 (444)
T ss_dssp SSCEEEEEECSSSSHHHHHHHHHHHHHHT--TCEEEEECSSS
T ss_pred CCcEEEEEeCCCCChHHHHHHHHHHHHHc--CCEEEEEECCC
Confidence 44689999999999999999999887654 34577766554
No 260
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=97.37 E-value=0.00013 Score=54.41 Aligned_cols=26 Identities=35% Similarity=0.446 Sum_probs=22.8
Q ss_pred CccEEEEEeCCCCcHHHHHHHHHhHH
Q 035585 46 NVNIVGVYGMGGIGKTTLVKEFARQA 71 (183)
Q Consensus 46 ~~~~v~i~G~~G~GKTtL~~~~~~~~ 71 (183)
...+++|.|++|+||||+++.+..++
T Consensus 26 ~g~~I~I~G~~GsGKSTl~k~La~~L 51 (252)
T 4e22_A 26 IAPVITVDGPSGAGKGTLCKALAESL 51 (252)
T ss_dssp TSCEEEEECCTTSSHHHHHHHHHHHT
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHhc
Confidence 45689999999999999999998654
No 261
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=97.36 E-value=9.8e-05 Score=55.47 Aligned_cols=26 Identities=19% Similarity=0.401 Sum_probs=22.6
Q ss_pred CccEEEEEeCCCCcHHHHHHHHHhHH
Q 035585 46 NVNIVGVYGMGGIGKTTLVKEFARQA 71 (183)
Q Consensus 46 ~~~~v~i~G~~G~GKTtL~~~~~~~~ 71 (183)
+..+++|+|++|+|||||++.+...+
T Consensus 31 ~Ge~~~liG~nGsGKSTLlk~l~Gl~ 56 (262)
T 1b0u_A 31 AGDVISIIGSSGSGKSTFLRCINFLE 56 (262)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 45689999999999999999997654
No 262
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=97.36 E-value=0.00022 Score=56.03 Aligned_cols=28 Identities=25% Similarity=0.418 Sum_probs=24.4
Q ss_pred CccEEEEEeCCCCcHHHHHHHHHhHHhh
Q 035585 46 NVNIVGVYGMGGIGKTTLVKEFARQASE 73 (183)
Q Consensus 46 ~~~~v~i~G~~G~GKTtL~~~~~~~~~~ 73 (183)
+..+++|+|++|+||||+++.++..+..
T Consensus 156 ~g~vi~lvG~nGsGKTTll~~Lag~l~~ 183 (359)
T 2og2_A 156 KPAVIMIVGVNGGGKTTSLGKLAHRLKN 183 (359)
T ss_dssp SSEEEEEECCTTSCHHHHHHHHHHHHHH
T ss_pred CCeEEEEEcCCCChHHHHHHHHHhhccc
Confidence 3468999999999999999999887754
No 263
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=97.36 E-value=0.00015 Score=54.32 Aligned_cols=27 Identities=30% Similarity=0.569 Sum_probs=23.9
Q ss_pred ccEEEEEeCCCCcHHHHHHHHHhHHhh
Q 035585 47 VNIVGVYGMGGIGKTTLVKEFARQASE 73 (183)
Q Consensus 47 ~~~v~i~G~~G~GKTtL~~~~~~~~~~ 73 (183)
+.+|+|+|++|+||||+++.+...+..
T Consensus 4 ~~lIvl~G~pGSGKSTla~~La~~L~~ 30 (260)
T 3a4m_A 4 IMLIILTGLPGVGKSTFSKNLAKILSK 30 (260)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHHH
T ss_pred CEEEEEEcCCCCCHHHHHHHHHHHHHh
Confidence 468999999999999999999988654
No 264
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=97.36 E-value=0.00012 Score=50.93 Aligned_cols=25 Identities=32% Similarity=0.404 Sum_probs=22.2
Q ss_pred cEEEEEeCCCCcHHHHHHHHHhHHh
Q 035585 48 NIVGVYGMGGIGKTTLVKEFARQAS 72 (183)
Q Consensus 48 ~~v~i~G~~G~GKTtL~~~~~~~~~ 72 (183)
..++|.|++|+||||+++.+...+.
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~~lg 27 (173)
T 1e6c_A 3 EPIFMVGARGCGMTTVGRELARALG 27 (173)
T ss_dssp CCEEEESCTTSSHHHHHHHHHHHHT
T ss_pred ceEEEECCCCCCHHHHHHHHHHHhC
Confidence 4689999999999999999988764
No 265
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=97.36 E-value=0.00017 Score=53.72 Aligned_cols=28 Identities=21% Similarity=0.196 Sum_probs=23.9
Q ss_pred CCccEEEEEeCCCCcHHHHHHHHHhHHh
Q 035585 45 VNVNIVGVYGMGGIGKTTLVKEFARQAS 72 (183)
Q Consensus 45 ~~~~~v~i~G~~G~GKTtL~~~~~~~~~ 72 (183)
..+..++|+|++|+||||+++.+...+.
T Consensus 30 ~~~~~i~l~G~~GsGKSTla~~L~~~l~ 57 (253)
T 2p5t_B 30 KQPIAILLGGQSGAGKTTIHRIKQKEFQ 57 (253)
T ss_dssp SSCEEEEEESCGGGTTHHHHHHHHHHTT
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHhcC
Confidence 3456899999999999999999988754
No 266
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=97.36 E-value=7.3e-05 Score=54.80 Aligned_cols=26 Identities=27% Similarity=0.298 Sum_probs=16.9
Q ss_pred CccEEEEEeCCCCcHHHHHHHHH-hHH
Q 035585 46 NVNIVGVYGMGGIGKTTLVKEFA-RQA 71 (183)
Q Consensus 46 ~~~~v~i~G~~G~GKTtL~~~~~-~~~ 71 (183)
+..+++|+|++|+|||||++.+. ..+
T Consensus 26 ~G~ii~l~Gp~GsGKSTl~~~L~~~~~ 52 (231)
T 3lnc_A 26 VGVILVLSSPSGCGKTTVANKLLEKQK 52 (231)
T ss_dssp CCCEEEEECSCC----CHHHHHHC---
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhcCC
Confidence 34689999999999999999998 654
No 267
>4b3f_X DNA-binding protein smubp-2; hydrolase, helicase; 2.50A {Homo sapiens} PDB: 4b3g_A
Probab=97.36 E-value=0.00053 Score=57.86 Aligned_cols=62 Identities=24% Similarity=0.253 Sum_probs=41.7
Q ss_pred HHHHHHHHHhccCCccEEEEEeCCCCcHHHHHHHHHhHHhhhhcccceEEEEecCCcCHHHHHHHHH
Q 035585 33 STLKSIQDALTDVNVNIVGVYGMGGIGKTTLVKEFARQASEEKLFDQVVFSEVSQTPDIKKIHGEIA 99 (183)
Q Consensus 33 ~~l~~l~~~l~~~~~~~v~i~G~~G~GKTtL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 99 (183)
.+.+.+...+.+ ..+.+|+||||+|||+.+..+...+-.. ...+.++..++.+...+...+.
T Consensus 193 ~Q~~AV~~al~~--~~~~lI~GPPGTGKT~ti~~~I~~l~~~---~~~ILv~a~TN~AvD~i~erL~ 254 (646)
T 4b3f_X 193 SQKEAVLFALSQ--KELAIIHGPPGTGKTTTVVEIILQAVKQ---GLKVLCCAPSNIAVDNLVERLA 254 (646)
T ss_dssp HHHHHHHHHHHC--SSEEEEECCTTSCHHHHHHHHHHHHHHT---TCCEEEEESSHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcC--CCceEEECCCCCCHHHHHHHHHHHHHhC---CCeEEEEcCchHHHHHHHHHHH
Confidence 444556666643 3588999999999997766666555433 2346677777777777766664
No 268
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=97.36 E-value=7.2e-05 Score=52.54 Aligned_cols=26 Identities=23% Similarity=0.324 Sum_probs=18.7
Q ss_pred ccEEEEEeCCCCcHHHHHHHHHhHHh
Q 035585 47 VNIVGVYGMGGIGKTTLVKEFARQAS 72 (183)
Q Consensus 47 ~~~v~i~G~~G~GKTtL~~~~~~~~~ 72 (183)
+.+++|.|++|+||||+++.+...+.
T Consensus 5 ~~~I~l~G~~GsGKST~a~~La~~l~ 30 (183)
T 2vli_A 5 SPIIWINGPFGVGKTHTAHTLHERLP 30 (183)
T ss_dssp CCEEEEECCC----CHHHHHHHHHST
T ss_pred CeEEEEECCCCCCHHHHHHHHHHhcC
Confidence 46899999999999999999987654
No 269
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=97.36 E-value=0.00014 Score=52.97 Aligned_cols=27 Identities=19% Similarity=0.092 Sum_probs=23.5
Q ss_pred CccEEEEEeCCCCcHHHHHHHHHhHHh
Q 035585 46 NVNIVGVYGMGGIGKTTLVKEFARQAS 72 (183)
Q Consensus 46 ~~~~v~i~G~~G~GKTtL~~~~~~~~~ 72 (183)
.+..|+|.|++|+||||+++.+...+.
T Consensus 4 ~~~~I~l~G~~GsGKsT~~~~La~~l~ 30 (222)
T 1zak_A 4 DPLKVMISGAPASGKGTQCELIKTKYQ 30 (222)
T ss_dssp CSCCEEEEESTTSSHHHHHHHHHHHHC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhC
Confidence 346789999999999999999988764
No 270
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=97.36 E-value=0.00027 Score=55.27 Aligned_cols=42 Identities=24% Similarity=0.287 Sum_probs=30.1
Q ss_pred HHHHHHHHHh----ccCCccEEEEEeCCCCcHHHHHHHHHhHHhhh
Q 035585 33 STLKSIQDAL----TDVNVNIVGVYGMGGIGKTTLVKEFARQASEE 74 (183)
Q Consensus 33 ~~l~~l~~~l----~~~~~~~v~i~G~~G~GKTtL~~~~~~~~~~~ 74 (183)
...+.+.+.+ .......++|+|++|+||||+++.++..+...
T Consensus 6 ~L~~~il~~l~~~i~~g~~~~i~l~G~~G~GKTTl~~~la~~l~~~ 51 (359)
T 2ga8_A 6 KLADDVLQLLDNRIEDNYRVCVILVGSPGSGKSTIAEELCQIINEK 51 (359)
T ss_dssp HHHHHHHHHHHHTTTTCSCEEEEEECCTTSSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccCCeeEEEEECCCCCcHHHHHHHHHHHhCCC
Confidence 3444444443 24445679999999999999999998877543
No 271
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=97.34 E-value=0.00013 Score=53.31 Aligned_cols=26 Identities=19% Similarity=0.236 Sum_probs=22.3
Q ss_pred CccEEEEEeCCCCcHHHHHHHHHhHH
Q 035585 46 NVNIVGVYGMGGIGKTTLVKEFARQA 71 (183)
Q Consensus 46 ~~~~v~i~G~~G~GKTtL~~~~~~~~ 71 (183)
++..++|.|++|+||||+++.+...+
T Consensus 6 ~~~~I~l~G~~GsGKsT~a~~La~~l 31 (227)
T 1zd8_A 6 RLLRAVIMGAPGSGKGTVSSRITTHF 31 (227)
T ss_dssp -CCEEEEEECTTSSHHHHHHHHHHHS
T ss_pred cCcEEEEECCCCCCHHHHHHHHHHHc
Confidence 34689999999999999999998765
No 272
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=97.34 E-value=0.00015 Score=51.63 Aligned_cols=26 Identities=27% Similarity=0.328 Sum_probs=22.8
Q ss_pred CCccEEEEEeCCCCcHHHHHHHHHhH
Q 035585 45 VNVNIVGVYGMGGIGKTTLVKEFARQ 70 (183)
Q Consensus 45 ~~~~~v~i~G~~G~GKTtL~~~~~~~ 70 (183)
.++.+|+|+|++|+||||+++.+...
T Consensus 6 ~~~~~I~i~G~~GsGKST~~~~La~~ 31 (203)
T 1uf9_A 6 KHPIIIGITGNIGSGKSTVAALLRSW 31 (203)
T ss_dssp CCCEEEEEEECTTSCHHHHHHHHHHT
T ss_pred cCceEEEEECCCCCCHHHHHHHHHHC
Confidence 34578999999999999999998875
No 273
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=97.34 E-value=0.00014 Score=52.12 Aligned_cols=22 Identities=32% Similarity=0.537 Sum_probs=20.1
Q ss_pred cEEEEEeCCCCcHHHHHHHHHh
Q 035585 48 NIVGVYGMGGIGKTTLVKEFAR 69 (183)
Q Consensus 48 ~~v~i~G~~G~GKTtL~~~~~~ 69 (183)
..++|+|++|+||||+++.+..
T Consensus 2 ~~i~i~G~~GsGKSTl~~~L~~ 23 (204)
T 2if2_A 2 KRIGLTGNIGCGKSTVAQMFRE 23 (204)
T ss_dssp CEEEEEECTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCcCHHHHHHHHHH
Confidence 3689999999999999999987
No 274
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=97.33 E-value=0.00014 Score=54.82 Aligned_cols=25 Identities=28% Similarity=0.425 Sum_probs=22.5
Q ss_pred CccEEEEEeCCCCcHHHHHHHHHhH
Q 035585 46 NVNIVGVYGMGGIGKTTLVKEFARQ 70 (183)
Q Consensus 46 ~~~~v~i~G~~G~GKTtL~~~~~~~ 70 (183)
+..+++|+|++|+|||||++.++..
T Consensus 45 ~Ge~~~l~G~NGsGKSTLlk~l~Gl 69 (267)
T 2zu0_C 45 PGEVHAIMGPNGSGKSTLSATLAGR 69 (267)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHTC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 4468999999999999999999885
No 275
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=97.33 E-value=0.00015 Score=52.39 Aligned_cols=24 Identities=21% Similarity=0.347 Sum_probs=20.8
Q ss_pred EEEEEeCCCCcHHHHHHHHHhHHh
Q 035585 49 IVGVYGMGGIGKTTLVKEFARQAS 72 (183)
Q Consensus 49 ~v~i~G~~G~GKTtL~~~~~~~~~ 72 (183)
.|+|.|++|+||||+++.+...+.
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~~ 25 (216)
T 3fb4_A 2 NIVLMGLPGAGKGTQAEQIIEKYE 25 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 478999999999999999987653
No 276
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=97.33 E-value=0.00011 Score=55.04 Aligned_cols=26 Identities=23% Similarity=0.345 Sum_probs=22.4
Q ss_pred CccEEEEEeCCCCcHHHHHHHHHhHH
Q 035585 46 NVNIVGVYGMGGIGKTTLVKEFARQA 71 (183)
Q Consensus 46 ~~~~v~i~G~~G~GKTtL~~~~~~~~ 71 (183)
+..+++|+|++|+|||||++.+....
T Consensus 32 ~Ge~~~liG~nGsGKSTLlk~l~Gl~ 57 (257)
T 1g6h_A 32 KGDVTLIIGPNGSGKSTLINVITGFL 57 (257)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 44689999999999999999997544
No 277
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=97.33 E-value=0.00014 Score=54.26 Aligned_cols=25 Identities=32% Similarity=0.418 Sum_probs=22.4
Q ss_pred CccEEEEEeCCCCcHHHHHHHHHhH
Q 035585 46 NVNIVGVYGMGGIGKTTLVKEFARQ 70 (183)
Q Consensus 46 ~~~~v~i~G~~G~GKTtL~~~~~~~ 70 (183)
+..+++|+|++|+|||||++.+...
T Consensus 28 ~Ge~~~l~G~nGsGKSTLlk~l~Gl 52 (250)
T 2d2e_A 28 KGEVHALMGPNGAGKSTLGKILAGD 52 (250)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHHTC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 4468999999999999999999885
No 278
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=97.32 E-value=0.00011 Score=54.39 Aligned_cols=26 Identities=35% Similarity=0.431 Sum_probs=22.5
Q ss_pred CccEEEEEeCCCCcHHHHHHHHHhHH
Q 035585 46 NVNIVGVYGMGGIGKTTLVKEFARQA 71 (183)
Q Consensus 46 ~~~~v~i~G~~G~GKTtL~~~~~~~~ 71 (183)
+..+++|+|++|+|||||++.++..+
T Consensus 31 ~Ge~~~l~G~nGsGKSTLl~~l~Gl~ 56 (240)
T 1ji0_A 31 RGQIVTLIGANGAGKTTTLSAIAGLV 56 (240)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 44689999999999999999997644
No 279
>3iqw_A Tail-anchored protein targeting factor GET3; ATPase, Zn binding, protein transport; HET: ANP; 3.00A {Chaetomium thermophilum} PDB: 3iqx_A* 3ibg_A*
Probab=97.32 E-value=0.0015 Score=50.83 Aligned_cols=33 Identities=33% Similarity=0.372 Sum_probs=26.5
Q ss_pred hccCCccEEEEEeCCCCcHHHHHHHHHhHHhhh
Q 035585 42 LTDVNVNIVGVYGMGGIGKTTLVKEFARQASEE 74 (183)
Q Consensus 42 l~~~~~~~v~i~G~~G~GKTtL~~~~~~~~~~~ 74 (183)
+.+....++.+.|.+|+||||++..++..+...
T Consensus 11 l~~~~~~i~~~sgkGGvGKTt~a~~lA~~la~~ 43 (334)
T 3iqw_A 11 LDQRSLRWIFVGGKGGVGKTTTSCSLAIQLAKV 43 (334)
T ss_dssp HHCTTCCEEEEECSTTSSHHHHHHHHHHHHTTS
T ss_pred hcCCCeEEEEEeCCCCccHHHHHHHHHHHHHhC
Confidence 334556788899999999999999998777643
No 280
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=97.31 E-value=0.00049 Score=55.10 Aligned_cols=37 Identities=19% Similarity=0.202 Sum_probs=28.6
Q ss_pred HHHHHHhccCCccEEEEEeCCCCcHHHHHHHHHhHHhh
Q 035585 36 KSIQDALTDVNVNIVGVYGMGGIGKTTLVKEFARQASE 73 (183)
Q Consensus 36 ~~l~~~l~~~~~~~v~i~G~~G~GKTtL~~~~~~~~~~ 73 (183)
..+.+.+ ..+..+++|+|++|+||||+++.+...+..
T Consensus 157 ~~L~~l~-~~~ggii~I~GpnGSGKTTlL~allg~l~~ 193 (418)
T 1p9r_A 157 DNFRRLI-KRPHGIILVTGPTGSGKSTTLYAGLQELNS 193 (418)
T ss_dssp HHHHHHH-TSSSEEEEEECSTTSCHHHHHHHHHHHHCC
T ss_pred HHHHHHH-HhcCCeEEEECCCCCCHHHHHHHHHhhcCC
Confidence 3444443 345679999999999999999999887754
No 281
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=97.31 E-value=0.0001 Score=53.79 Aligned_cols=27 Identities=41% Similarity=0.545 Sum_probs=23.0
Q ss_pred CccEEEEEeCCCCcHHHHHHHHHhHHh
Q 035585 46 NVNIVGVYGMGGIGKTTLVKEFARQAS 72 (183)
Q Consensus 46 ~~~~v~i~G~~G~GKTtL~~~~~~~~~ 72 (183)
+..+++|+|++|+|||||++.++....
T Consensus 34 ~Ge~~~iiG~NGsGKSTLlk~l~Gl~~ 60 (214)
T 1sgw_A 34 KGNVVNFHGPNGIGKTTLLKTISTYLK 60 (214)
T ss_dssp TTCCEEEECCTTSSHHHHHHHHTTSSC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence 346899999999999999999986553
No 282
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=97.31 E-value=0.00014 Score=52.23 Aligned_cols=22 Identities=45% Similarity=0.590 Sum_probs=20.0
Q ss_pred cEEEEEeCCCCcHHHHHHHHHh
Q 035585 48 NIVGVYGMGGIGKTTLVKEFAR 69 (183)
Q Consensus 48 ~~v~i~G~~G~GKTtL~~~~~~ 69 (183)
.+++|+|++|+||||+++.+..
T Consensus 3 ~~i~l~G~~GsGKST~~~~La~ 24 (206)
T 1jjv_A 3 YIVGLTGGIGSGKTTIANLFTD 24 (206)
T ss_dssp EEEEEECSTTSCHHHHHHHHHT
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 4689999999999999999976
No 283
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=97.30 E-value=0.00019 Score=50.30 Aligned_cols=28 Identities=25% Similarity=0.230 Sum_probs=24.2
Q ss_pred CccEEEEEeCCCCcHHHHHHHHHhHHhh
Q 035585 46 NVNIVGVYGMGGIGKTTLVKEFARQASE 73 (183)
Q Consensus 46 ~~~~v~i~G~~G~GKTtL~~~~~~~~~~ 73 (183)
+..+++|+|++|+||||+++.+...+..
T Consensus 4 ~g~~i~l~G~~GsGKST~~~~L~~~l~~ 31 (179)
T 2pez_A 4 RGCTVWLTGLSGAGKTTVSMALEEYLVC 31 (179)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHhh
Confidence 3468899999999999999999987754
No 284
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=97.30 E-value=0.00027 Score=51.05 Aligned_cols=28 Identities=25% Similarity=0.267 Sum_probs=25.0
Q ss_pred CCccEEEEEeCCCCcHHHHHHHHHhHHh
Q 035585 45 VNVNIVGVYGMGGIGKTTLVKEFARQAS 72 (183)
Q Consensus 45 ~~~~~v~i~G~~G~GKTtL~~~~~~~~~ 72 (183)
....+++|.|++|+||||+++.+...+.
T Consensus 23 ~~~~~i~~~G~~GsGKsT~~~~l~~~l~ 50 (211)
T 1m7g_A 23 QRGLTIWLTGLSASGKSTLAVELEHQLV 50 (211)
T ss_dssp SSCEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHhc
Confidence 4557899999999999999999998876
No 285
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=97.29 E-value=0.00034 Score=49.29 Aligned_cols=28 Identities=25% Similarity=0.424 Sum_probs=24.7
Q ss_pred ccEEEEEeCCCCcHHHHHHHHHhHHhhh
Q 035585 47 VNIVGVYGMGGIGKTTLVKEFARQASEE 74 (183)
Q Consensus 47 ~~~v~i~G~~G~GKTtL~~~~~~~~~~~ 74 (183)
.+.++|.|++|+|||||++.+...+...
T Consensus 6 ~~~i~i~G~sGsGKTTl~~~l~~~l~~~ 33 (174)
T 1np6_A 6 IPLLAFAAWSGTGKTTLLKKLIPALCAR 33 (174)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHHHHT
T ss_pred ceEEEEEeCCCCCHHHHHHHHHHhcccc
Confidence 5789999999999999999999887653
No 286
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=97.29 E-value=0.00011 Score=53.41 Aligned_cols=26 Identities=38% Similarity=0.231 Sum_probs=23.0
Q ss_pred ccEEEEEeCCCCcHHHHHHHHHhHHhh
Q 035585 47 VNIVGVYGMGGIGKTTLVKEFARQASE 73 (183)
Q Consensus 47 ~~~v~i~G~~G~GKTtL~~~~~~~~~~ 73 (183)
..+++|.|++|+|||||++.+... ..
T Consensus 22 Ge~~~liG~nGsGKSTLl~~l~Gl-~p 47 (208)
T 3b85_A 22 NTIVFGLGPAGSGKTYLAMAKAVQ-AL 47 (208)
T ss_dssp CSEEEEECCTTSSTTHHHHHHHHH-HH
T ss_pred CCEEEEECCCCCCHHHHHHHHhcC-CC
Confidence 468999999999999999999887 53
No 287
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=97.29 E-value=0.00018 Score=52.27 Aligned_cols=27 Identities=19% Similarity=0.188 Sum_probs=23.0
Q ss_pred CccEEEEEeCCCCcHHHHHHHHHhHHh
Q 035585 46 NVNIVGVYGMGGIGKTTLVKEFARQAS 72 (183)
Q Consensus 46 ~~~~v~i~G~~G~GKTtL~~~~~~~~~ 72 (183)
+...++|.|++|+||||+++.+...+.
T Consensus 4 ~~~~I~l~G~~GsGKsT~a~~La~~l~ 30 (217)
T 3be4_A 4 KKHNLILIGAPGSGKGTQCEFIKKEYG 30 (217)
T ss_dssp GCCEEEEEECTTSSHHHHHHHHHHHHC
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHhC
Confidence 345789999999999999999988763
No 288
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=97.29 E-value=0.00084 Score=62.88 Aligned_cols=86 Identities=21% Similarity=0.263 Sum_probs=54.6
Q ss_pred CccEEEEEeCCCCcHHHHHHHHHhHHhhhhcccceEEEEecCCcCHHHHHHHHHHHhCCCch------hHHHHHHHHHHH
Q 035585 46 NVNIVGVYGMGGIGKTTLVKEFARQASEEKLFDQVVFSEVSQTPDIKKIHGEIAEKLGLEFS------EEAESRRASRLY 119 (183)
Q Consensus 46 ~~~~v~i~G~~G~GKTtL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~------~~~~~~~~~~~~ 119 (183)
+..++.|+|++|+|||||+.+++...... -..++|++......... ++.++.... ..........+.
T Consensus 382 ~G~lilI~G~pGsGKTtLaLqia~~~a~~--G~~vlyis~E~s~~~~~-----a~~lGvd~~~L~I~~~~~~e~il~~~~ 454 (2050)
T 3cmu_A 382 MGRIVEIYGPESSGKTTLTLQVIAAAQRE--GKTCAFIDAEHALDPIY-----ARKLGVDIDNLLCSQPDTGEQALEICD 454 (2050)
T ss_dssp TTSEEEEECCTTSSHHHHHHHHHHHHHTT--TCCEEEECTTSCCCHHH-----HHHTTCCTTTCEEECCSSHHHHHHHHH
T ss_pred CCcEEEEEeCCCCCHHHHHHHHHHHHHhc--CCeEEEEEcCCCHHHHH-----HHHcCCCHHHeEEeCCCCHHHHHHHHH
Confidence 45799999999999999999999877653 34688888776655431 444543211 111222222222
Q ss_pred HHHhcCCeEEEEEeCCCCc
Q 035585 120 ERLKKEKMILVILDNIWKY 138 (183)
Q Consensus 120 ~~~~~~~~~llvlD~~~~~ 138 (183)
........-+||+|.++.+
T Consensus 455 ~lv~~~~~~lIVIDSL~al 473 (2050)
T 3cmu_A 455 ALARSGAVDVIVVDSVAAL 473 (2050)
T ss_dssp HHHHHTCCSEEEESCGGGC
T ss_pred HHHHhcCCcEEEECCHHHh
Confidence 2233467789999998644
No 289
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=97.28 E-value=0.00019 Score=49.65 Aligned_cols=24 Identities=21% Similarity=0.224 Sum_probs=21.4
Q ss_pred EEEEEeCCCCcHHHHHHHHHhHHh
Q 035585 49 IVGVYGMGGIGKTTLVKEFARQAS 72 (183)
Q Consensus 49 ~v~i~G~~G~GKTtL~~~~~~~~~ 72 (183)
.|+|.|++|+||||+++.+...+.
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~l~ 25 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVGSLLSRSLN 25 (168)
T ss_dssp EEEEESCTTSCHHHHHHHHHHHHT
T ss_pred eEEEECCCCCCHHHHHHHHHHHhC
Confidence 578999999999999999988764
No 290
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=97.28 E-value=0.00013 Score=54.27 Aligned_cols=26 Identities=35% Similarity=0.541 Sum_probs=22.5
Q ss_pred CccEEEEEeCCCCcHHHHHHHHHhHH
Q 035585 46 NVNIVGVYGMGGIGKTTLVKEFARQA 71 (183)
Q Consensus 46 ~~~~v~i~G~~G~GKTtL~~~~~~~~ 71 (183)
+..+++|+|++|+|||||++.+...+
T Consensus 34 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 59 (247)
T 2ff7_A 34 QGEVIGIVGRSGSGKSTLTKLIQRFY 59 (247)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 44689999999999999999997654
No 291
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=97.28 E-value=0.00019 Score=53.42 Aligned_cols=30 Identities=17% Similarity=0.277 Sum_probs=24.3
Q ss_pred cCCccEEEEEeCCCCcHHHHHHHHHhHHhh
Q 035585 44 DVNVNIVGVYGMGGIGKTTLVKEFARQASE 73 (183)
Q Consensus 44 ~~~~~~v~i~G~~G~GKTtL~~~~~~~~~~ 73 (183)
..++.+|+|.|++|+||||+++.+...+..
T Consensus 19 ~~~~~iI~I~G~~GSGKST~a~~L~~~lg~ 48 (252)
T 1uj2_A 19 GGEPFLIGVSGGTASGKSSVCAKIVQLLGQ 48 (252)
T ss_dssp --CCEEEEEECSTTSSHHHHHHHHHHHTTG
T ss_pred CCCcEEEEEECCCCCCHHHHHHHHHHHhhh
Confidence 345568999999999999999999887653
No 292
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=97.28 E-value=0.00014 Score=54.50 Aligned_cols=26 Identities=27% Similarity=0.316 Sum_probs=22.6
Q ss_pred CccEEEEEeCCCCcHHHHHHHHHhHH
Q 035585 46 NVNIVGVYGMGGIGKTTLVKEFARQA 71 (183)
Q Consensus 46 ~~~~v~i~G~~G~GKTtL~~~~~~~~ 71 (183)
+..+++|+|++|+|||||++.+...+
T Consensus 45 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 70 (260)
T 2ghi_A 45 SGTTCALVGHTGSGKSTIAKLLYRFY 70 (260)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhccC
Confidence 45689999999999999999997654
No 293
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=97.27 E-value=0.00016 Score=52.24 Aligned_cols=23 Identities=22% Similarity=0.286 Sum_probs=20.2
Q ss_pred EEEEEeCCCCcHHHHHHHHHhHH
Q 035585 49 IVGVYGMGGIGKTTLVKEFARQA 71 (183)
Q Consensus 49 ~v~i~G~~G~GKTtL~~~~~~~~ 71 (183)
.|+|.|++|+||||+++.+...+
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~ 24 (216)
T 3dl0_A 2 NLVLMGLPGAGKGTQGERIVEKY 24 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 37899999999999999998764
No 294
>2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B*
Probab=97.27 E-value=0.0016 Score=56.09 Aligned_cols=90 Identities=19% Similarity=0.227 Sum_probs=46.4
Q ss_pred cEEEEEeCCCCcHHHHHHHHHhHHhhhhcccceEEEEecCCcCHHHHHHHHHHHhCCCchh-------------------
Q 035585 48 NIVGVYGMGGIGKTTLVKEFARQASEEKLFDQVVFSEVSQTPDIKKIHGEIAEKLGLEFSE------------------- 108 (183)
Q Consensus 48 ~~v~i~G~~G~GKTtL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~------------------- 108 (183)
..++|+|++|+||||++..+.............+.+-.+.......+...+...++.....
T Consensus 110 ~~vii~gpTGSGKTtllp~ll~~~~~~~~~g~~ilvl~P~r~La~q~~~~l~~~~~~~v~~~vG~~i~~~~~~~~~~~I~ 189 (773)
T 2xau_A 110 QIMVFVGETGSGKTTQIPQFVLFDEMPHLENTQVACTQPRRVAAMSVAQRVAEEMDVKLGEEVGYSIRFENKTSNKTILK 189 (773)
T ss_dssp SEEEEECCTTSSHHHHHHHHHHHHHCGGGGTCEEEEEESCHHHHHHHHHHHHHHTTCCBTTTEEEEETTEEECCTTCSEE
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhccccCCCceEEecCchHHHHHHHHHHHHHHhCCchhheecceeccccccCCCCCEE
Confidence 5899999999999997777644332211112223333333323333444454444321100
Q ss_pred -HHHHHHHHHHHHHHhcCCeEEEEEeCCCC
Q 035585 109 -EAESRRASRLYERLKKEKMILVILDNIWK 137 (183)
Q Consensus 109 -~~~~~~~~~~~~~~~~~~~~llvlD~~~~ 137 (183)
.........+.......+.-+|||||++.
T Consensus 190 v~T~G~l~r~l~~~~~l~~~~~lIlDEah~ 219 (773)
T 2xau_A 190 YMTDGMLLREAMEDHDLSRYSCIILDEAHE 219 (773)
T ss_dssp EEEHHHHHHHHHHSTTCTTEEEEEECSGGG
T ss_pred EECHHHHHHHHhhCccccCCCEEEecCccc
Confidence 01222222232222236788999999985
No 295
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=97.27 E-value=0.00014 Score=54.23 Aligned_cols=26 Identities=31% Similarity=0.450 Sum_probs=22.5
Q ss_pred CccEEEEEeCCCCcHHHHHHHHHhHH
Q 035585 46 NVNIVGVYGMGGIGKTTLVKEFARQA 71 (183)
Q Consensus 46 ~~~~v~i~G~~G~GKTtL~~~~~~~~ 71 (183)
+..+++|+|++|+|||||++.+...+
T Consensus 25 ~Ge~~~liG~NGsGKSTLlk~l~Gl~ 50 (249)
T 2qi9_C 25 AGEILHLVGPNGAGKSTLLARMAGMT 50 (249)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCcHHHHHHHHhCCC
Confidence 44689999999999999999987654
No 296
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=97.26 E-value=0.00017 Score=51.45 Aligned_cols=25 Identities=20% Similarity=0.213 Sum_probs=22.5
Q ss_pred ccEEEEEeCCCCcHHHHHHHHHhHH
Q 035585 47 VNIVGVYGMGGIGKTTLVKEFARQA 71 (183)
Q Consensus 47 ~~~v~i~G~~G~GKTtL~~~~~~~~ 71 (183)
...|+|.|++|+||||+++.+...+
T Consensus 4 ~~~I~l~G~~GsGKsT~~~~L~~~l 28 (204)
T 2v54_A 4 GALIVFEGLDKSGKTTQCMNIMESI 28 (204)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHTS
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHHH
Confidence 4579999999999999999998876
No 297
>3end_A Light-independent protochlorophyllide reductase iron-sulfur ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2} PDB: 3fwy_A*
Probab=97.26 E-value=0.00059 Score=52.08 Aligned_cols=52 Identities=23% Similarity=0.275 Sum_probs=33.5
Q ss_pred HHHHHHHhccCCccEEEEEeCCCCcHHHHHHHHHhHHhhhhcccceEEEEecCC
Q 035585 35 LKSIQDALTDVNVNIVGVYGMGGIGKTTLVKEFARQASEEKLFDQVVFSEVSQT 88 (183)
Q Consensus 35 l~~l~~~l~~~~~~~v~i~G~~G~GKTtL~~~~~~~~~~~~~~~~~~~~~~~~~ 88 (183)
...+.......+.++++|+|.+|+||||++..++..+... -..++.+++...
T Consensus 29 ~~~l~~~~~~~~~~vI~v~~KGGvGKTT~a~nLA~~La~~--G~~VlliD~D~~ 80 (307)
T 3end_A 29 QVHLDEADKITGAKVFAVYGKGGIGKSTTSSNLSAAFSIL--GKRVLQIGCDPK 80 (307)
T ss_dssp -----------CCEEEEEECSTTSSHHHHHHHHHHHHHHT--TCCEEEEEESSS
T ss_pred hhhhccccccCCceEEEEECCCCccHHHHHHHHHHHHHHC--CCeEEEEeCCCC
Confidence 3333333334567888999999999999999999988765 335777777644
No 298
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=97.26 E-value=0.00022 Score=54.79 Aligned_cols=27 Identities=19% Similarity=0.222 Sum_probs=23.9
Q ss_pred CCccEEEEEeCCCCcHHHHHHHHHhHH
Q 035585 45 VNVNIVGVYGMGGIGKTTLVKEFARQA 71 (183)
Q Consensus 45 ~~~~~v~i~G~~G~GKTtL~~~~~~~~ 71 (183)
.+...++|+|++|+|||||++.+...+
T Consensus 124 ~~Ge~vaIvGpsGsGKSTLl~lL~gl~ 150 (305)
T 2v9p_A 124 PKKNCLAFIGPPNTGKSMLCNSLIHFL 150 (305)
T ss_dssp TTCSEEEEECSSSSSHHHHHHHHHHHH
T ss_pred cCCCEEEEECCCCCcHHHHHHHHhhhc
Confidence 455799999999999999999998776
No 299
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*
Probab=97.26 E-value=0.00029 Score=63.85 Aligned_cols=26 Identities=27% Similarity=0.403 Sum_probs=22.7
Q ss_pred CccEEEEEeCCCCcHHHHHHHHHhHH
Q 035585 46 NVNIVGVYGMGGIGKTTLVKEFARQA 71 (183)
Q Consensus 46 ~~~~v~i~G~~G~GKTtL~~~~~~~~ 71 (183)
+...++|+|++|+|||||++.+...+
T Consensus 1058 ~Ge~v~ivG~sGsGKSTl~~~l~g~~ 1083 (1284)
T 3g5u_A 1058 KGQTLALVGSSGCGKSTVVQLLERFY 1083 (1284)
T ss_dssp SSSEEEEECSSSTTHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCc
Confidence 45689999999999999999998654
No 300
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=97.25 E-value=0.00015 Score=55.02 Aligned_cols=26 Identities=31% Similarity=0.434 Sum_probs=22.5
Q ss_pred CccEEEEEeCCCCcHHHHHHHHHhHH
Q 035585 46 NVNIVGVYGMGGIGKTTLVKEFARQA 71 (183)
Q Consensus 46 ~~~~v~i~G~~G~GKTtL~~~~~~~~ 71 (183)
+..+++|+|++|+|||||++.++..+
T Consensus 46 ~Ge~~~liG~NGsGKSTLlk~l~Gl~ 71 (279)
T 2ihy_A 46 KGDKWILYGLNGAGKTTLLNILNAYE 71 (279)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCcHHHHHHHHhCCC
Confidence 44689999999999999999997654
No 301
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*
Probab=97.25 E-value=0.00019 Score=65.06 Aligned_cols=28 Identities=29% Similarity=0.338 Sum_probs=23.4
Q ss_pred CCccEEEEEeCCCCcHHHHHHHHHhHHh
Q 035585 45 VNVNIVGVYGMGGIGKTTLVKEFARQAS 72 (183)
Q Consensus 45 ~~~~~v~i~G~~G~GKTtL~~~~~~~~~ 72 (183)
.+...++|+|++|+|||||++.+...+.
T Consensus 414 ~~G~~~~ivG~sGsGKSTl~~ll~g~~~ 441 (1284)
T 3g5u_A 414 KSGQTVALVGNSGCGKSTTVQLMQRLYD 441 (1284)
T ss_dssp CTTCEEEEECCSSSSHHHHHHHTTTSSC
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 3457899999999999999999876553
No 302
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=97.23 E-value=0.00022 Score=53.75 Aligned_cols=24 Identities=33% Similarity=0.526 Sum_probs=21.4
Q ss_pred EEEEEeCCCCcHHHHHHHHHhHHh
Q 035585 49 IVGVYGMGGIGKTTLVKEFARQAS 72 (183)
Q Consensus 49 ~v~i~G~~G~GKTtL~~~~~~~~~ 72 (183)
.++|+|++|+|||||++.++....
T Consensus 4 ~v~lvG~nGaGKSTLln~L~g~~~ 27 (270)
T 3sop_A 4 NIMVVGQSGLGKSTLVNTLFKSQV 27 (270)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHhCCCC
Confidence 578999999999999999987653
No 303
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=97.23 E-value=0.00012 Score=52.71 Aligned_cols=25 Identities=28% Similarity=0.563 Sum_probs=22.7
Q ss_pred EEEEEeCCCCcHHHHHHHHHhHHhh
Q 035585 49 IVGVYGMGGIGKTTLVKEFARQASE 73 (183)
Q Consensus 49 ~v~i~G~~G~GKTtL~~~~~~~~~~ 73 (183)
+++|.|++|+||||+++.+...+..
T Consensus 2 ~I~i~G~~GsGKsTl~~~L~~~l~~ 26 (214)
T 1gtv_A 2 LIAIEGVDGAGKRTLVEKLSGAFRA 26 (214)
T ss_dssp EEEEEEEEEEEHHHHHHHHHHHHHE
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHHh
Confidence 6889999999999999999988764
No 304
>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*
Probab=97.23 E-value=0.00022 Score=51.05 Aligned_cols=40 Identities=18% Similarity=0.223 Sum_probs=21.0
Q ss_pred hHHHHHHHHHHhccCCccEEEEEeCCCCcHHHHHHHHHhH
Q 035585 31 RLSTLKSIQDALTDVNVNIVGVYGMGGIGKTTLVKEFARQ 70 (183)
Q Consensus 31 R~~~l~~l~~~l~~~~~~~v~i~G~~G~GKTtL~~~~~~~ 70 (183)
++...+.+.+...+.+.--|+|+|.+|+|||||+..+...
T Consensus 14 ~~~~~~~m~~~~~~~~~~ki~vvG~~~~GKSsLi~~l~~~ 53 (204)
T 4gzl_A 14 LVPRGSHMENLYFQGQAIKCVVVGDGAVGKTCLLISYTTN 53 (204)
T ss_dssp ----------------CEEEEEEESTTSSHHHHHHHHHHS
T ss_pred cccchhHHHhHhhcCCeEEEEEECcCCCCHHHHHHHHHhC
Confidence 4444455545444455567899999999999999888754
No 305
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=97.23 E-value=0.00023 Score=49.95 Aligned_cols=25 Identities=16% Similarity=0.255 Sum_probs=21.7
Q ss_pred ccEEEEEeCCCCcHHHHHHHHHhHH
Q 035585 47 VNIVGVYGMGGIGKTTLVKEFARQA 71 (183)
Q Consensus 47 ~~~v~i~G~~G~GKTtL~~~~~~~~ 71 (183)
..+.+|+|++|+|||||+..+...+
T Consensus 26 ~g~~~i~G~NGsGKStll~ai~~~l 50 (182)
T 3kta_A 26 KGFTAIVGANGSGKSNIGDAILFVL 50 (182)
T ss_dssp SSEEEEEECTTSSHHHHHHHHHHHT
T ss_pred CCcEEEECCCCCCHHHHHHHHHHHH
Confidence 3588999999999999999987654
No 306
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=97.22 E-value=0.00078 Score=55.46 Aligned_cols=112 Identities=14% Similarity=0.162 Sum_probs=60.8
Q ss_pred CccEEEEEeCCCCcHHHHHHHHHhHHhhhhcccceEEEEecCCcCHHHHHHHHHHHhCCC---------------ch-hH
Q 035585 46 NVNIVGVYGMGGIGKTTLVKEFARQASEEKLFDQVVFSEVSQTPDIKKIHGEIAEKLGLE---------------FS-EE 109 (183)
Q Consensus 46 ~~~~v~i~G~~G~GKTtL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~---------------~~-~~ 109 (183)
+..+++|.|++|+|||||++.++...... -..++|+..... ...+...+ ..++.. .+ ..
T Consensus 280 ~G~i~~i~G~~GsGKSTLl~~l~g~~~~~--G~~vi~~~~ee~--~~~l~~~~-~~~g~~~~~~~~~g~~~~~~~~p~~L 354 (525)
T 1tf7_A 280 KDSIILATGATGTGKTLLVSRFVENACAN--KERAILFAYEES--RAQLLRNA-YSWGMDFEEMERQNLLKIVCAYPESA 354 (525)
T ss_dssp SSCEEEEEECTTSSHHHHHHHHHHHHHTT--TCCEEEEESSSC--HHHHHHHH-HTTSCCHHHHHHTTSEEECCCCGGGS
T ss_pred CCcEEEEEeCCCCCHHHHHHHHHHHHHhC--CCCEEEEEEeCC--HHHHHHHH-HHcCCCHHHHHhCCCEEEEEeccccC
Confidence 44689999999999999999999876643 223455544332 22222222 112111 00 11
Q ss_pred HHHHHHHHHHHHHhcCCeEEEEEeCCCCccc----------ccccCcCCCCCCCCcEEEEEecCh
Q 035585 110 AESRRASRLYERLKKEKMILVILDNIWKYLD----------LETVGIPFGDDHRGCKLLLTARDC 164 (183)
Q Consensus 110 ~~~~~~~~~~~~~~~~~~~llvlD~~~~~~~----------~~~l~~~~~~~~~~~~iiitsr~~ 164 (183)
+.......+.......++-+||+|-...++. +..+...+ ...|..+|+++++.
T Consensus 355 S~g~~q~~~~a~~l~~~p~llilDp~~~Ld~~~~~~~~~~~i~~ll~~l--~~~g~tvilvsh~~ 417 (525)
T 1tf7_A 355 GLEDHLQIIKSEINDFKPARIAIDSLSALARGVSNNAFRQFVIGVTGYA--KQEEITGLFTNTSD 417 (525)
T ss_dssp CHHHHHHHHHHHHHTTCCSEEEEECHHHHTSSSCHHHHHHHHHHHHHHH--HHTTCEEEEEEECS
T ss_pred CHHHHHHHHHHHHHhhCCCEEEEcChHHHHhhCChHHHHHHHHHHHHHH--HhCCCEEEEEECcc
Confidence 2233344445555557888999993221111 11111111 23477899999986
No 307
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=97.22 E-value=0.00022 Score=55.91 Aligned_cols=27 Identities=33% Similarity=0.406 Sum_probs=23.2
Q ss_pred CccEEEEEeCCCCcHHHHHHHHHhHHh
Q 035585 46 NVNIVGVYGMGGIGKTTLVKEFARQAS 72 (183)
Q Consensus 46 ~~~~v~i~G~~G~GKTtL~~~~~~~~~ 72 (183)
+..+++|.||+|+|||||++.++....
T Consensus 29 ~Ge~~~llGpsGsGKSTLLr~iaGl~~ 55 (359)
T 3fvq_A 29 PGEILFIIGASGCGKTTLLRCLAGFEQ 55 (359)
T ss_dssp TTCEEEEEESTTSSHHHHHHHHHTSSC
T ss_pred CCCEEEEECCCCchHHHHHHHHhcCCC
Confidence 447899999999999999999986543
No 308
>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*
Probab=97.22 E-value=0.001 Score=48.29 Aligned_cols=53 Identities=19% Similarity=0.159 Sum_probs=34.7
Q ss_pred CccEEEEEeCCCCcHHHHHHHHHhHHhhhhcccceEEEEecCCcCHHHHHHHHHH
Q 035585 46 NVNIVGVYGMGGIGKTTLVKEFARQASEEKLFDQVVFSEVSQTPDIKKIHGEIAE 100 (183)
Q Consensus 46 ~~~~v~i~G~~G~GKTtL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 100 (183)
+..+|.+.|+.|+||||+++.+...+.... + .+....-+.....-+..+.++.
T Consensus 5 ~g~~i~~eG~~gsGKsT~~~~l~~~l~~~~-~-~v~~~~~p~~~~~g~~i~~~l~ 57 (213)
T 4edh_A 5 TGLFVTLEGPEGAGKSTNRDYLAERLRERG-I-EVQLTREPGGTPLAERIRELLL 57 (213)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHHHTTT-C-CEEEEESSCSSHHHHHHHHHHH
T ss_pred CceEEEEEcCCCCCHHHHHHHHHHHHHHcC-C-CcccccCCCCCHHHHHHHHHHh
Confidence 346889999999999999999999887652 2 2334444443333333444443
No 309
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=97.20 E-value=0.0023 Score=59.23 Aligned_cols=86 Identities=21% Similarity=0.268 Sum_probs=57.8
Q ss_pred CccEEEEEeCCCCcHHHHHHHHHhHHhhhhcccceEEEEecCCcCHHHHHHHHHHHhCCCchh------HHHHHHHHHHH
Q 035585 46 NVNIVGVYGMGGIGKTTLVKEFARQASEEKLFDQVVFSEVSQTPDIKKIHGEIAEKLGLEFSE------EAESRRASRLY 119 (183)
Q Consensus 46 ~~~~v~i~G~~G~GKTtL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~------~~~~~~~~~~~ 119 (183)
+.+++.|+|+.|+|||||+.++....... -..++|+++....+... ++.++..... ...+..+..+.
T Consensus 1430 rg~~iei~g~~~sGkttl~~~~~a~~~~~--g~~~~~i~~e~~~~~~~-----~~~~Gv~~~~l~~~~p~~~e~~l~~~~ 1502 (1706)
T 3cmw_A 1430 MGRIVEIYGPESSGKTTLTLQVIAAAQRE--GKTCAFIDAEHALDPIY-----ARKLGVDIDNLLCSQPDTGEQALEICD 1502 (1706)
T ss_dssp TTSEEEEECSTTSSHHHHHHHHHHHHHHT--TCCEEEECTTSCCCHHH-----HHHTTCCGGGCEEECCSSHHHHHHHHH
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHHHHhc--CCeEEEEecCCCCCHHH-----HHHcCCCHHHeEEeCCCcHHHHHHHHH
Confidence 45789999999999999999998775543 45688888877655432 5555544222 12233344444
Q ss_pred HHHhcCCeEEEEEeCCCCc
Q 035585 120 ERLKKEKMILVILDNIWKY 138 (183)
Q Consensus 120 ~~~~~~~~~llvlD~~~~~ 138 (183)
..++....-+||+|.+.-+
T Consensus 1503 ~~~~s~~~~~vvvDsv~al 1521 (1706)
T 3cmw_A 1503 ALARSGAVDVIVVDSVAAL 1521 (1706)
T ss_dssp HHHHHTCCSEEEESCSTTC
T ss_pred HHHHcCCCCEEEEccHHhC
Confidence 4556677889999987544
No 310
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=97.17 E-value=0.00029 Score=51.00 Aligned_cols=24 Identities=33% Similarity=0.461 Sum_probs=20.8
Q ss_pred EEEEEeCCCCcHHHHHHHHHhHHh
Q 035585 49 IVGVYGMGGIGKTTLVKEFARQAS 72 (183)
Q Consensus 49 ~v~i~G~~G~GKTtL~~~~~~~~~ 72 (183)
+++|.|+||+||+|.|+.++.++.
T Consensus 2 ~Iil~GpPGsGKgTqa~~La~~~g 25 (206)
T 3sr0_A 2 ILVFLGPPGAGKGTQAKRLAKEKG 25 (206)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHHHHC
Confidence 467889999999999999988753
No 311
>3lv8_A DTMP kinase, thymidylate kinase; structural genomics, in diseases, center for structural genomics of infectious DISE ATP-binding; HET: ADP TMP TYD; 1.80A {Vibrio cholerae o1 biovar eltor} PDB: 3n2i_A*
Probab=97.17 E-value=0.0012 Score=48.72 Aligned_cols=53 Identities=13% Similarity=0.229 Sum_probs=35.5
Q ss_pred CccEEEEEeCCCCcHHHHHHHHHhHHhhhhcccceEEEEecCCcCHHHHHHHHH
Q 035585 46 NVNIVGVYGMGGIGKTTLVKEFARQASEEKLFDQVVFSEVSQTPDIKKIHGEIA 99 (183)
Q Consensus 46 ~~~~v~i~G~~G~GKTtL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 99 (183)
+..+|.+.|++|+||||+++.+...+... .+..+....-+.....-+..+.++
T Consensus 26 ~~~~i~~eG~~GsGKsT~~~~l~~~l~~~-~~~~~~~~rep~~t~~g~~ir~~l 78 (236)
T 3lv8_A 26 NAKFIVIEGLEGAGKSTAIQVVVETLQQN-GIDHITRTREPGGTLLAEKLRALV 78 (236)
T ss_dssp CCCEEEEEESTTSCHHHHHHHHHHHHHHT-TCCCEEEEESSCSSHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhc-CCCeeeeecCCCCCHHHHHHHHHH
Confidence 34689999999999999999999988765 233244444444444444444443
No 312
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=97.17 E-value=0.00033 Score=51.42 Aligned_cols=27 Identities=22% Similarity=0.197 Sum_probs=23.3
Q ss_pred CccEEEEEeCCCCcHHHHHHHHHhHHh
Q 035585 46 NVNIVGVYGMGGIGKTTLVKEFARQAS 72 (183)
Q Consensus 46 ~~~~v~i~G~~G~GKTtL~~~~~~~~~ 72 (183)
....++|.|++|+||||+++.+...+.
T Consensus 15 ~~~~I~l~G~~GsGKsT~a~~La~~l~ 41 (233)
T 1ak2_A 15 KGVRAVLLGPPGAGKGTQAPKLAKNFC 41 (233)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhC
Confidence 345799999999999999999988764
No 313
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=97.17 E-value=0.0006 Score=52.70 Aligned_cols=40 Identities=28% Similarity=0.341 Sum_probs=30.8
Q ss_pred CccEEEEEeCCCCcHHHHHHHHHhHHhhhhcccceEEEEecC
Q 035585 46 NVNIVGVYGMGGIGKTTLVKEFARQASEEKLFDQVVFSEVSQ 87 (183)
Q Consensus 46 ~~~~v~i~G~~G~GKTtL~~~~~~~~~~~~~~~~~~~~~~~~ 87 (183)
+..+++|+|++|+||||++..++..+... -..+.++.+..
T Consensus 104 ~~~vI~ivG~~G~GKTT~~~~LA~~l~~~--g~kVllid~D~ 143 (320)
T 1zu4_A 104 RLNIFMLVGVNGTGKTTSLAKMANYYAEL--GYKVLIAAADT 143 (320)
T ss_dssp SCEEEEEESSTTSSHHHHHHHHHHHHHHT--TCCEEEEECCC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHC--CCeEEEEeCCC
Confidence 35689999999999999999999888754 33466655543
No 314
>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}
Probab=97.16 E-value=0.0006 Score=50.01 Aligned_cols=41 Identities=29% Similarity=0.361 Sum_probs=29.3
Q ss_pred CccEEEEEeCCCCcHHHHHHHHHhHHhhhhcccceEEEEecC
Q 035585 46 NVNIVGVYGMGGIGKTTLVKEFARQASEEKLFDQVVFSEVSQ 87 (183)
Q Consensus 46 ~~~~v~i~G~~G~GKTtL~~~~~~~~~~~~~~~~~~~~~~~~ 87 (183)
+..++.|.|++|+|||+|+.+++.+.... ....++|+....
T Consensus 29 ~G~l~~i~G~pG~GKT~l~l~~~~~~~~~-~~~~v~~~s~E~ 69 (251)
T 2zts_A 29 EGTTVLLTGGTGTGKTTFAAQFIYKGAEE-YGEPGVFVTLEE 69 (251)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHHHHHHH-HCCCEEEEESSS
T ss_pred CCeEEEEEeCCCCCHHHHHHHHHHHHHHh-cCCCceeecccC
Confidence 34689999999999999999987654332 133466766553
No 315
>4tmk_A Protein (thymidylate kinase); ATP:DTMP phosphotransferase, transferase; HET: T5A; 1.98A {Escherichia coli} SCOP: c.37.1.1 PDB: 5tmp_A*
Probab=97.16 E-value=0.0014 Score=47.56 Aligned_cols=53 Identities=15% Similarity=0.204 Sum_probs=36.9
Q ss_pred ccEEEEEeCCCCcHHHHHHHHHhHHhhhhcccceEEEEecCCcCHHHHHHHHHH
Q 035585 47 VNIVGVYGMGGIGKTTLVKEFARQASEEKLFDQVVFSEVSQTPDIKKIHGEIAE 100 (183)
Q Consensus 47 ~~~v~i~G~~G~GKTtL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 100 (183)
..+|.+.|+.|+||||+++.+...+.... +..+.+..-+....+-+..+.++.
T Consensus 3 g~~i~~eG~~gsGKsT~~~~l~~~l~~~~-~~~v~~~rep~~t~~g~~ir~~l~ 55 (213)
T 4tmk_A 3 SKYIVIEGLEGAGKTTARNVVVETLEQLG-IRDMVFTREPGGTQLAEKLRSLLL 55 (213)
T ss_dssp CCEEEEEECTTSCHHHHHHHHHHHHHHTT-CCCEEEEESSCSSHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHcC-CCcceeeeCCCCCHHHHHHHHHHh
Confidence 35789999999999999999999987752 223445444554445555555554
No 316
>3v9p_A DTMP kinase, thymidylate kinase; ssgcid, STRU genomics, seattle structural genomics center for infectious transferase; 1.90A {Burkholderia thailandensis}
Probab=97.15 E-value=0.0029 Score=46.40 Aligned_cols=55 Identities=22% Similarity=0.208 Sum_probs=31.9
Q ss_pred CccEEEEEeCCCCcHHHHHHHHHhHHhhhhc--ccceEEEEecCCcCHHHHHHHHHH
Q 035585 46 NVNIVGVYGMGGIGKTTLVKEFARQASEEKL--FDQVVFSEVSQTPDIKKIHGEIAE 100 (183)
Q Consensus 46 ~~~~v~i~G~~G~GKTtL~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~i~~ 100 (183)
+...|.+.|++|+||||+++.+...+..... ...+.....+.....-+..+.++.
T Consensus 24 ~g~~I~~eG~~GsGKsT~~~~l~~~l~~~~~~~g~~v~~~rep~~t~~g~~ir~~l~ 80 (227)
T 3v9p_A 24 RGKFITFEGIDGAGKTTHLQWFCDRLQERLGPAGRHVVVTREPGGTRLGETLREILL 80 (227)
T ss_dssp CCCEEEEECCC---CHHHHHHHHHHHHHHHGGGTCCEEEEESSSSSHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhhccccceeeeeecCCCCChHHHHHHHHHH
Confidence 3467899999999999999999998876410 112344444444333334444443
No 317
>1u0j_A DNA replication protein; AAA+ protein, P-loop atpases, helicase; HET: DNA ADP; 2.10A {Adeno-associated virus - 2} SCOP: c.37.1.20 PDB: 1s9h_A
Probab=97.14 E-value=0.00071 Score=50.86 Aligned_cols=37 Identities=19% Similarity=0.232 Sum_probs=27.9
Q ss_pred HHHHHHHhccC-C-ccEEEEEeCCCCcHHHHHHHHHhHH
Q 035585 35 LKSIQDALTDV-N-VNIVGVYGMGGIGKTTLVKEFARQA 71 (183)
Q Consensus 35 l~~l~~~l~~~-~-~~~v~i~G~~G~GKTtL~~~~~~~~ 71 (183)
...+.+++... + ...++++||+|+|||+++..+++..
T Consensus 90 ~~~l~~~l~~~~~~~n~~~l~GppgtGKt~~a~ala~~~ 128 (267)
T 1u0j_A 90 ASVFLGWATKKFGKRNTIWLFGPATTGKTNIAEAIAHTV 128 (267)
T ss_dssp HHHHHHHHTTCSTTCCEEEEECSTTSSHHHHHHHHHHHS
T ss_pred HHHHHHHHhCCCCCCcEEEEECCCCCCHHHHHHHHHhhh
Confidence 34455666543 2 4579999999999999999998853
No 318
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=97.14 E-value=0.00031 Score=51.21 Aligned_cols=23 Identities=22% Similarity=0.241 Sum_probs=20.8
Q ss_pred EEEEEeCCCCcHHHHHHHHHhHH
Q 035585 49 IVGVYGMGGIGKTTLVKEFARQA 71 (183)
Q Consensus 49 ~v~i~G~~G~GKTtL~~~~~~~~ 71 (183)
.++|.|++|+||||+++.+...+
T Consensus 2 ~I~l~G~~GsGKsT~a~~La~~l 24 (223)
T 2xb4_A 2 NILIFGPNGSGKGTQGNLVKDKY 24 (223)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 57899999999999999998875
No 319
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=97.14 E-value=0.00034 Score=50.57 Aligned_cols=23 Identities=17% Similarity=0.082 Sum_probs=20.6
Q ss_pred EEEEEeCCCCcHHHHHHHHHhHH
Q 035585 49 IVGVYGMGGIGKTTLVKEFARQA 71 (183)
Q Consensus 49 ~v~i~G~~G~GKTtL~~~~~~~~ 71 (183)
.++|.|++|+||||+++.+...+
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~ 24 (214)
T 1e4v_A 2 RIILLGAPVAGKGTQAQFIMEKY 24 (214)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 37899999999999999998865
No 320
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=97.14 E-value=0.00041 Score=55.43 Aligned_cols=25 Identities=28% Similarity=0.387 Sum_probs=22.0
Q ss_pred ccEEEEEeCCCCcHHHHHHHHHhHH
Q 035585 47 VNIVGVYGMGGIGKTTLVKEFARQA 71 (183)
Q Consensus 47 ~~~v~i~G~~G~GKTtL~~~~~~~~ 71 (183)
...++|+|++|+|||||++.+....
T Consensus 69 ~~~valvG~nGaGKSTLln~L~Gl~ 93 (413)
T 1tq4_A 69 VLNVAVTGETGSGKSSFINTLRGIG 93 (413)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHTCC
T ss_pred CeEEEEECCCCCcHHHHHHHHhCCC
Confidence 4589999999999999999998743
No 321
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=97.13 E-value=0.00029 Score=55.69 Aligned_cols=27 Identities=30% Similarity=0.388 Sum_probs=23.3
Q ss_pred CccEEEEEeCCCCcHHHHHHHHHhHHh
Q 035585 46 NVNIVGVYGMGGIGKTTLVKEFARQAS 72 (183)
Q Consensus 46 ~~~~v~i~G~~G~GKTtL~~~~~~~~~ 72 (183)
+..+++|.|++|+|||||++.+.....
T Consensus 28 ~Ge~~~llGpsGsGKSTLLr~iaGl~~ 54 (381)
T 3rlf_A 28 EGEFVVFVGPSGCGKSTLLRMIAGLET 54 (381)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHTSSC
T ss_pred CCCEEEEEcCCCchHHHHHHHHHcCCC
Confidence 457899999999999999999986553
No 322
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}
Probab=97.13 E-value=0.0003 Score=55.23 Aligned_cols=27 Identities=30% Similarity=0.337 Sum_probs=23.2
Q ss_pred CccEEEEEeCCCCcHHHHHHHHHhHHh
Q 035585 46 NVNIVGVYGMGGIGKTTLVKEFARQAS 72 (183)
Q Consensus 46 ~~~~v~i~G~~G~GKTtL~~~~~~~~~ 72 (183)
...+++|.|++|+|||||++.++....
T Consensus 28 ~Ge~~~llGpnGsGKSTLLr~iaGl~~ 54 (359)
T 2yyz_A 28 DGEFVALLGPSGCGKTTTLLMLAGIYK 54 (359)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHHTSSC
T ss_pred CCCEEEEEcCCCchHHHHHHHHHCCCC
Confidence 457899999999999999999986543
No 323
>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A
Probab=97.12 E-value=0.00091 Score=64.29 Aligned_cols=72 Identities=19% Similarity=0.196 Sum_probs=0.0
Q ss_pred ccEEEEEeCCCCcHHHHHHHHHhHHhhhhcccceEEEEecCCcCHHHHHHHHHHHhCCC--------chhHHHHHHHHHH
Q 035585 47 VNIVGVYGMGGIGKTTLVKEFARQASEEKLFDQVVFSEVSQTPDIKKIHGEIAEKLGLE--------FSEEAESRRASRL 118 (183)
Q Consensus 47 ~~~v~i~G~~G~GKTtL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~--------~~~~~~~~~~~~~ 118 (183)
.+-++++||+|+|||++|+.+....... ....++++...+...+...+...+... .|...
T Consensus 1267 ~~~vLL~GPpGtGKT~la~~~l~~~~~~----~~~~infsa~ts~~~~~~~i~~~~~~~~~~~g~~~~P~~~-------- 1334 (2695)
T 4akg_A 1267 KRGIILCGPPGSGKTMIMNNALRNSSLY----DVVGINFSKDTTTEHILSALHRHTNYVTTSKGLTLLPKSD-------- 1334 (2695)
T ss_dssp TCEEEEECSTTSSHHHHHHHHHHSCSSC----EEEEEECCTTCCHHHHHHHHHHHBCCEEETTTEEEEEBSS--------
T ss_pred CCeEEEECCCCCCHHHHHHHHHhcCCCC----ceEEEEeecCCCHHHHHHHHHHHhhhccccCCccccCCCC--------
Q ss_pred HHHHhcCCeEEEEEeCCC
Q 035585 119 YERLKKEKMILVILDNIW 136 (183)
Q Consensus 119 ~~~~~~~~~~llvlD~~~ 136 (183)
+++.+|++||++
T Consensus 1335 ------gk~~VlFiDEin 1346 (2695)
T 4akg_A 1335 ------IKNLVLFCDEIN 1346 (2695)
T ss_dssp ------SSCEEEEEETTT
T ss_pred ------CceEEEEecccc
No 324
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=97.12 E-value=0.00036 Score=49.95 Aligned_cols=26 Identities=27% Similarity=0.428 Sum_probs=22.5
Q ss_pred CccEEEEEeCCCCcHHHHHHHHHhHH
Q 035585 46 NVNIVGVYGMGGIGKTTLVKEFARQA 71 (183)
Q Consensus 46 ~~~~v~i~G~~G~GKTtL~~~~~~~~ 71 (183)
+..+++|+|+.|+||||+++.+...+
T Consensus 11 ~~~iIgltG~~GSGKSTva~~L~~~l 36 (192)
T 2grj_A 11 HHMVIGVTGKIGTGKSTVCEILKNKY 36 (192)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred cceEEEEECCCCCCHHHHHHHHHHhc
Confidence 44679999999999999999988763
No 325
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=97.12 E-value=0.00036 Score=51.51 Aligned_cols=26 Identities=31% Similarity=0.487 Sum_probs=22.7
Q ss_pred ccEEEEEeCCCCcHHHHHHHHHhHHh
Q 035585 47 VNIVGVYGMGGIGKTTLVKEFARQAS 72 (183)
Q Consensus 47 ~~~v~i~G~~G~GKTtL~~~~~~~~~ 72 (183)
+.+++|.|++|+||||+++.+...+.
T Consensus 9 ~~~i~i~G~~GsGKsTla~~la~~lg 34 (233)
T 3r20_A 9 SLVVAVDGPAGTGKSSVSRGLARALG 34 (233)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhC
Confidence 45899999999999999999987654
No 326
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=97.11 E-value=0.00036 Score=49.88 Aligned_cols=24 Identities=25% Similarity=0.398 Sum_probs=21.8
Q ss_pred EEEEEeCCCCcHHHHHHHHHhHHh
Q 035585 49 IVGVYGMGGIGKTTLVKEFARQAS 72 (183)
Q Consensus 49 ~v~i~G~~G~GKTtL~~~~~~~~~ 72 (183)
+++|.|++|+||||+++.+...+.
T Consensus 4 ~i~i~G~~GsGKst~~~~la~~lg 27 (208)
T 3ake_A 4 IVTIDGPSASGKSSVARRVAAALG 27 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHhcC
Confidence 799999999999999999988654
No 327
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=97.11 E-value=0.0004 Score=52.38 Aligned_cols=28 Identities=25% Similarity=0.343 Sum_probs=24.0
Q ss_pred CccEEEEEeCCCCcHHHHHHHHHhHHhh
Q 035585 46 NVNIVGVYGMGGIGKTTLVKEFARQASE 73 (183)
Q Consensus 46 ~~~~v~i~G~~G~GKTtL~~~~~~~~~~ 73 (183)
+..++.|+|++|+|||||+..++.....
T Consensus 29 ~G~i~~i~G~~GsGKTtl~~~l~~~~~~ 56 (279)
T 1nlf_A 29 AGTVGALVSPGGAGKSMLALQLAAQIAG 56 (279)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHHHT
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHHHhc
Confidence 4478999999999999999999876643
No 328
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=97.11 E-value=0.00079 Score=49.41 Aligned_cols=28 Identities=25% Similarity=0.337 Sum_probs=24.7
Q ss_pred CccEEEEEeCCCCcHHHHHHHHHhHHhh
Q 035585 46 NVNIVGVYGMGGIGKTTLVKEFARQASE 73 (183)
Q Consensus 46 ~~~~v~i~G~~G~GKTtL~~~~~~~~~~ 73 (183)
....++|.|++|+||||+++.+...+..
T Consensus 25 ~g~~i~i~G~~GsGKsT~~~~l~~~l~~ 52 (229)
T 4eaq_A 25 MSAFITFEGPEGSGKTTVINEVYHRLVK 52 (229)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHHHHTT
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHhc
Confidence 4468999999999999999999998764
No 329
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=97.11 E-value=0.00039 Score=54.84 Aligned_cols=113 Identities=16% Similarity=0.133 Sum_probs=57.9
Q ss_pred CCccEEEEEeCCCCcHHHHHHHHHhHHhhhhcccceEEEEecCCcCHHHHHHHHHH--HhCCCchhHHHHHHHHHHHHHH
Q 035585 45 VNVNIVGVYGMGGIGKTTLVKEFARQASEEKLFDQVVFSEVSQTPDIKKIHGEIAE--KLGLEFSEEAESRRASRLYERL 122 (183)
Q Consensus 45 ~~~~~v~i~G~~G~GKTtL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~--~l~~~~~~~~~~~~~~~~~~~~ 122 (183)
.+..+++|+|++|+||||+++.+...+... .-..+.++.-+........ ..+.. .++... ......+...+
T Consensus 134 ~~g~~i~ivG~~GsGKTTll~~l~~~~~~~-~~g~I~~~e~~~e~~~~~~-~~~v~Q~~~g~~~-----~~~~~~l~~~L 206 (372)
T 2ewv_A 134 RKMGLILVTGPTGSGKSTTIASMIDYINQT-KSYHIITIEDPIEYVFKHK-KSIVNQREVGEDT-----KSFADALRAAL 206 (372)
T ss_dssp SSSEEEEEECSSSSSHHHHHHHHHHHHHHH-SCCEEEEEESSCCSCCCCS-SSEEEEEEBTTTB-----SCSHHHHHHHT
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHhhcCcC-CCcEEEEecccHhhhhccC-ceEEEeeecCCCH-----HHHHHHHHHHh
Confidence 455789999999999999999999877653 0122323221110000000 00000 000000 00112333444
Q ss_pred hcCCeEEEEEeCCCCcccccccCcCCCCCCCCcEEEEEecChHHHh
Q 035585 123 KKEKMILVILDNIWKYLDLETVGIPFGDDHRGCKLLLTARDCNVLL 168 (183)
Q Consensus 123 ~~~~~~llvlD~~~~~~~~~~l~~~~~~~~~~~~iiitsr~~~~~~ 168 (183)
+ ..+-+|++||+.+...+....... ..|..++.|+|+.+...
T Consensus 207 ~-~~pd~illdE~~d~e~~~~~l~~~---~~g~~vi~t~H~~~~~~ 248 (372)
T 2ewv_A 207 R-EDPDVIFVGEMRDLETVETALRAA---ETGHLVFGTLHTNTAID 248 (372)
T ss_dssp T-SCCSEEEESCCCSHHHHHHHHHHH---TTTCEEEECCCCCSHHH
T ss_pred h-hCcCEEEECCCCCHHHHHHHHHHH---hcCCEEEEEECcchHHH
Confidence 4 567799999997554333322221 23556888888766443
No 330
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=97.10 E-value=0.001 Score=47.15 Aligned_cols=111 Identities=17% Similarity=0.112 Sum_probs=52.8
Q ss_pred ccEEEEEeCCCCcHHHHHHHHHhHHhhhhcccceEEEEecCCcCHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHHhcCC
Q 035585 47 VNIVGVYGMGGIGKTTLVKEFARQASEEKLFDQVVFSEVSQTPDIKKIHGEIAEKLGLEFSEEAESRRASRLYERLKKEK 126 (183)
Q Consensus 47 ~~~v~i~G~~G~GKTtL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 126 (183)
..+++++|++|+||||++..++.++.... ..+.++....+... ....+...++........ .....+...+. ++
T Consensus 3 g~i~vi~G~~gsGKTT~ll~~~~~~~~~g--~~v~~~~~~~d~r~--~~~~i~s~~g~~~~~~~~-~~~~~~~~~~~-~~ 76 (184)
T 2orw_A 3 GKLTVITGPMYSGKTTELLSFVEIYKLGK--KKVAVFKPKIDSRY--HSTMIVSHSGNGVEAHVI-ERPEEMRKYIE-ED 76 (184)
T ss_dssp CCEEEEEESTTSSHHHHHHHHHHHHHHTT--CEEEEEEEC-------CCCEECC----CEECEEE-SSGGGGGGGCC-TT
T ss_pred cEEEEEECCCCCCHHHHHHHHHHHHHHCC--CeEEEEeecccccc--CcccEEecCCCceeeEEE-CCHHHHHHHhc-CC
Confidence 35789999999999999988777765432 23444333221100 000000001110000000 00111222222 35
Q ss_pred eEEEEEeCCCCc-ccccccCcCCCCCCCCcEEEEEecChH
Q 035585 127 MILVILDNIWKY-LDLETVGIPFGDDHRGCKLLLTARDCN 165 (183)
Q Consensus 127 ~~llvlD~~~~~-~~~~~l~~~~~~~~~~~~iiitsr~~~ 165 (183)
.-+|+|||++.. .++...+..+.+. +..+++|.++.+
T Consensus 77 ~dvviIDE~Q~~~~~~~~~l~~l~~~--~~~Vi~~Gl~~~ 114 (184)
T 2orw_A 77 TRGVFIDEVQFFNPSLFEVVKDLLDR--GIDVFCAGLDLT 114 (184)
T ss_dssp EEEEEECCGGGSCTTHHHHHHHHHHT--TCEEEEEEESBC
T ss_pred CCEEEEECcccCCHHHHHHHHHHHHC--CCCEEEEeeccc
Confidence 679999999866 2322222222222 777898888543
No 331
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=97.10 E-value=0.00034 Score=52.21 Aligned_cols=26 Identities=38% Similarity=0.355 Sum_probs=23.3
Q ss_pred ccEEEEEeCCCCcHHHHHHHHHhHHh
Q 035585 47 VNIVGVYGMGGIGKTTLVKEFARQAS 72 (183)
Q Consensus 47 ~~~v~i~G~~G~GKTtL~~~~~~~~~ 72 (183)
...++|+|++|+||||+++.+...+.
T Consensus 48 g~~i~l~G~~GsGKSTl~~~La~~lg 73 (250)
T 3nwj_A 48 GRSMYLVGMMGSGKTTVGKIMARSLG 73 (250)
T ss_dssp TCCEEEECSTTSCHHHHHHHHHHHHT
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhcC
Confidence 46899999999999999999988764
No 332
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*
Probab=97.08 E-value=0.00035 Score=55.13 Aligned_cols=27 Identities=26% Similarity=0.350 Sum_probs=23.1
Q ss_pred CccEEEEEeCCCCcHHHHHHHHHhHHh
Q 035585 46 NVNIVGVYGMGGIGKTTLVKEFARQAS 72 (183)
Q Consensus 46 ~~~~v~i~G~~G~GKTtL~~~~~~~~~ 72 (183)
...+++|.|++|+|||||++.++....
T Consensus 36 ~Ge~~~llGpnGsGKSTLLr~iaGl~~ 62 (372)
T 1v43_A 36 DGEFLVLLGPSGCGKTTTLRMIAGLEE 62 (372)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHTSSC
T ss_pred CCCEEEEECCCCChHHHHHHHHHcCCC
Confidence 457899999999999999999986543
No 333
>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}
Probab=97.08 E-value=0.00075 Score=55.94 Aligned_cols=45 Identities=24% Similarity=0.253 Sum_probs=32.3
Q ss_pred cchHHHHHHHHHHh--ccCCccEEEEEeCCCCcHHHHHHHHHhHHhh
Q 035585 29 KSRLSTLKSIQDAL--TDVNVNIVGVYGMGGIGKTTLVKEFARQASE 73 (183)
Q Consensus 29 ~gR~~~l~~l~~~l--~~~~~~~v~i~G~~G~GKTtL~~~~~~~~~~ 73 (183)
+.|......+.... .-.+..+++|+|++|+|||||++.+...+..
T Consensus 349 f~~peV~~vLR~~~~~~~~~G~iI~LiG~sGSGKSTLar~La~~L~~ 395 (552)
T 3cr8_A 349 YSFPEVLAELHRQTPPRERQGFTVFFTGLSGAGKSTLARALAARLME 395 (552)
T ss_dssp TSCHHHHHHHHHHSCCGGGSCEEEEEEESSCHHHHHHHHHHHHHHHT
T ss_pred ccccchhhhhhhhcccccccceEEEEECCCCChHHHHHHHHHHhhcc
Confidence 34444444555443 2234578999999999999999999998864
No 334
>1fx0_B ATP synthase beta chain; latent ATPase, thermal stability, potential tentoxin binding hydrolase; 3.20A {Spinacia oleracea} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1kmh_B*
Probab=97.07 E-value=0.0038 Score=50.81 Aligned_cols=91 Identities=23% Similarity=0.325 Sum_probs=56.4
Q ss_pred CCccEEEEEeCCCCcHHHHHHHHHhHHhhhhcccceEEEEecC-CcCHHHHHHHHHHHhCCC-----------------c
Q 035585 45 VNVNIVGVYGMGGIGKTTLVKEFARQASEEKLFDQVVFSEVSQ-TPDIKKIHGEIAEKLGLE-----------------F 106 (183)
Q Consensus 45 ~~~~~v~i~G~~G~GKTtL~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~i~~~l~~~-----------------~ 106 (183)
.+.+-++|.|++|+|||+|+..+++..... +.+.++|+-+.. .....++...+...-... .
T Consensus 163 gkGqr~gIfgg~GvGKT~L~~~l~~~~a~~-~~~v~V~~~iGER~rEv~e~~~~~~~~~~l~~~~l~~~rtvvV~~t~d~ 241 (498)
T 1fx0_B 163 RRGGKIGLFGGAGVGKTVLIMELINNIAKA-HGGVSVFGGVGERTREGNDLYMEMKESGVINEQNIAESKVALVYGQMNE 241 (498)
T ss_dssp CTTCCEEEEECSSSSHHHHHHHHHHHTTTT-CSSCEEEEEESCCSHHHHHHHHHHHHTTSSCSSTTCCCCEEEEEECTTS
T ss_pred ccCCeEEeecCCCCCchHHHHHHHHHHHhh-CCCEEEEEEcccCcHHHHHHHHhhhcccccccccccccceEEEEeCCCC
Confidence 345678999999999999999999876543 234556665543 355667777776531111 0
Q ss_pred hh-H--HHHHHHHHHHHHHhc--CCeEEEEEeCCC
Q 035585 107 SE-E--AESRRASRLYERLKK--EKMILVILDNIW 136 (183)
Q Consensus 107 ~~-~--~~~~~~~~~~~~~~~--~~~~llvlD~~~ 136 (183)
+. . ........+-++++. ++.+||++|++.
T Consensus 242 p~~~R~~~~~~altiAEyfrd~~G~dVLl~~Dsit 276 (498)
T 1fx0_B 242 PPGARMRVGLTALTMAEYFRDVNEQDVLLFIDNIF 276 (498)
T ss_dssp CHHHHTTHHHHHHHTHHHHTTTSCCEEEEEEECSH
T ss_pred CHHHHHHHHHHHHHHHHHHHHhcCCcEEEEeccHH
Confidence 10 0 111112334456653 789999999975
No 335
>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A
Probab=97.07 E-value=0.00035 Score=55.11 Aligned_cols=27 Identities=26% Similarity=0.332 Sum_probs=23.1
Q ss_pred CccEEEEEeCCCCcHHHHHHHHHhHHh
Q 035585 46 NVNIVGVYGMGGIGKTTLVKEFARQAS 72 (183)
Q Consensus 46 ~~~~v~i~G~~G~GKTtL~~~~~~~~~ 72 (183)
...+++|.|++|+|||||++.++....
T Consensus 28 ~Ge~~~llGpnGsGKSTLLr~iaGl~~ 54 (372)
T 1g29_1 28 DGEFMILLGPSGCGKTTTLRMIAGLEE 54 (372)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHHTSSC
T ss_pred CCCEEEEECCCCcHHHHHHHHHHcCCC
Confidence 446899999999999999999986543
No 336
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=97.06 E-value=0.002 Score=50.32 Aligned_cols=31 Identities=29% Similarity=0.509 Sum_probs=26.0
Q ss_pred cCCccEEEEEeCCCCcHHHHHHHHHhHHhhh
Q 035585 44 DVNVNIVGVYGMGGIGKTTLVKEFARQASEE 74 (183)
Q Consensus 44 ~~~~~~v~i~G~~G~GKTtL~~~~~~~~~~~ 74 (183)
..+...++|+|.+|+|||||+..+...+...
T Consensus 76 ~~~~~~I~i~G~~G~GKSTl~~~L~~~l~~~ 106 (355)
T 3p32_A 76 SGNAHRVGITGVPGVGKSTAIEALGMHLIER 106 (355)
T ss_dssp CCCSEEEEEECCTTSSHHHHHHHHHHHHHTT
T ss_pred cCCceEEEEECCCCCCHHHHHHHHHHHHHhC
Confidence 3456789999999999999999998877543
No 337
>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6
Probab=97.04 E-value=0.00022 Score=54.38 Aligned_cols=28 Identities=25% Similarity=0.404 Sum_probs=21.2
Q ss_pred CccEEEEEeCCCCcHHHHHHHHHhHHhh
Q 035585 46 NVNIVGVYGMGGIGKTTLVKEFARQASE 73 (183)
Q Consensus 46 ~~~~v~i~G~~G~GKTtL~~~~~~~~~~ 73 (183)
+..+|+|.|++|+||||+++.+...+..
T Consensus 4 ~~~iIgItG~sGSGKSTva~~L~~~lg~ 31 (290)
T 1a7j_A 4 KHPIISVTGSSGAGTSTVKHTFDQIFRR 31 (290)
T ss_dssp TSCEEEEESCC---CCTHHHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHHhh
Confidence 4568999999999999999999887653
No 338
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=97.03 E-value=0.0004 Score=49.19 Aligned_cols=24 Identities=33% Similarity=0.567 Sum_probs=21.2
Q ss_pred cEEEEEeCCCCcHHHHHHHHHhHH
Q 035585 48 NIVGVYGMGGIGKTTLVKEFARQA 71 (183)
Q Consensus 48 ~~v~i~G~~G~GKTtL~~~~~~~~ 71 (183)
-.++|+|++|+|||||++.+....
T Consensus 30 ~kv~lvG~~g~GKSTLl~~l~~~~ 53 (191)
T 1oix_A 30 FKVVLIGDSGVGKSNLLSRFTRNE 53 (191)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHSC
T ss_pred eEEEEECcCCCCHHHHHHHHhcCC
Confidence 468999999999999999998754
No 339
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*
Probab=97.03 E-value=0.00047 Score=47.18 Aligned_cols=25 Identities=24% Similarity=0.319 Sum_probs=21.7
Q ss_pred ccEEEEEeCCCCcHHHHHHHHHhHH
Q 035585 47 VNIVGVYGMGGIGKTTLVKEFARQA 71 (183)
Q Consensus 47 ~~~v~i~G~~G~GKTtL~~~~~~~~ 71 (183)
.++.+|+|++|+|||+++.++..-+
T Consensus 23 ~g~~~I~G~NGsGKStil~Ai~~~l 47 (149)
T 1f2t_A 23 EGINLIIGQNGSGKSSLLDAILVGL 47 (149)
T ss_dssp SEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHH
Confidence 4688999999999999999987644
No 340
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=97.02 E-value=0.0005 Score=49.77 Aligned_cols=23 Identities=39% Similarity=0.485 Sum_probs=20.5
Q ss_pred ccEEEEEeCCCCcHHHHHHHHHh
Q 035585 47 VNIVGVYGMGGIGKTTLVKEFAR 69 (183)
Q Consensus 47 ~~~v~i~G~~G~GKTtL~~~~~~ 69 (183)
+.+++|.|++|+||||+++.+..
T Consensus 4 ~~~I~i~G~~GSGKST~~~~L~~ 26 (218)
T 1vht_A 4 RYIVALTGGIGSGKSTVANAFAD 26 (218)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHH
Confidence 35899999999999999999865
No 341
>2ck3_D ATP synthase subunit beta\, mitochondrial; hydrolase; HET: ANP ADP; 1.9A {Bos taurus} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1cow_D* 1bmf_D* 1e1q_D* 1e1r_D* 1efr_D* 1e79_D* 1h8h_D* 1ohh_D* 1qo1_D 1w0j_D* 1w0k_D* 1h8e_D* 2jdi_D* 2jiz_D* 2jj1_D* 2jj2_D* 2v7q_D* 2wss_D* 2w6j_D 2w6e_D ...
Probab=97.02 E-value=0.0061 Score=49.40 Aligned_cols=91 Identities=20% Similarity=0.314 Sum_probs=55.6
Q ss_pred CCccEEEEEeCCCCcHHHHHHHHHhHHhhhhcccceEEEEecCC-cCHHHHHHHHHHHhCCC----------------ch
Q 035585 45 VNVNIVGVYGMGGIGKTTLVKEFARQASEEKLFDQVVFSEVSQT-PDIKKIHGEIAEKLGLE----------------FS 107 (183)
Q Consensus 45 ~~~~~v~i~G~~G~GKTtL~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~i~~~l~~~----------------~~ 107 (183)
.+.+-++|.|++|+|||+|+..++...... +.+.++|.-+... ....++...+...-... .+
T Consensus 151 gkGQr~~Ifgg~G~GKT~L~~~i~~~~~~~-~~~v~V~~~iGER~rEv~e~~~~~~~~~~l~~~~~~~rtvvV~~t~d~p 229 (482)
T 2ck3_D 151 AKGGKIGLFGGAGVGKTVLIMELINNVAKA-HGGYSVFAGVGERTREGNDLYHEMIESGVINLKDATSKVALVYGQMNEP 229 (482)
T ss_dssp ETTCEEEEEECTTSSHHHHHHHHHHHTTTT-CSSEEEEEEESCCHHHHHHHHHHHHHHTSSCSSSSCCCEEEEEECTTSC
T ss_pred ccCCeeeeecCCCCChHHHHHHHHHhhHhh-CCCEEEEEECCCcchHHHHHHHHhhhccccccccCCceEEEEEECCCCC
Confidence 345788999999999999999998876443 2234556555443 45566767775542111 11
Q ss_pred h-H--HHHHHHHHHHHHHh--cCCeEEEEEeCCC
Q 035585 108 E-E--AESRRASRLYERLK--KEKMILVILDNIW 136 (183)
Q Consensus 108 ~-~--~~~~~~~~~~~~~~--~~~~~llvlD~~~ 136 (183)
. . ........+-++++ +++.+||++|++.
T Consensus 230 ~~~r~~~~~~a~tiAEyfrd~~G~dVLll~Dsit 263 (482)
T 2ck3_D 230 PGARARVALTGLTVAEYFRDQEGQDVLLFIDNIF 263 (482)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTCSCEEEEEECTH
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCcEEEEeccHH
Confidence 1 0 11111233445554 3799999999975
No 342
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=97.02 E-value=0.00039 Score=55.64 Aligned_cols=28 Identities=32% Similarity=0.471 Sum_probs=24.0
Q ss_pred cCCccEEEEEeCCCCcHHHHHHHHHhHH
Q 035585 44 DVNVNIVGVYGMGGIGKTTLVKEFARQA 71 (183)
Q Consensus 44 ~~~~~~v~i~G~~G~GKTtL~~~~~~~~ 71 (183)
...+.+++|+|++|+||||+++.++..+
T Consensus 255 ~~~~~lIil~G~pGSGKSTla~~L~~~~ 282 (416)
T 3zvl_A 255 SPNPEVVVAVGFPGAGKSTFIQEHLVSA 282 (416)
T ss_dssp CSSCCEEEEESCTTSSHHHHHHHHTGGG
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHhc
Confidence 3456889999999999999999988764
No 343
>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}
Probab=97.01 E-value=0.00046 Score=54.76 Aligned_cols=26 Identities=38% Similarity=0.538 Sum_probs=22.6
Q ss_pred CccEEEEEeCCCCcHHHHHHHHHhHH
Q 035585 46 NVNIVGVYGMGGIGKTTLVKEFARQA 71 (183)
Q Consensus 46 ~~~~v~i~G~~G~GKTtL~~~~~~~~ 71 (183)
+..+++|.|++|+|||||++.+....
T Consensus 46 ~Ge~~~llGpsGsGKSTLLr~iaGl~ 71 (390)
T 3gd7_A 46 PGQRVGLLGRTGSGKSTLLSAFLRLL 71 (390)
T ss_dssp TTCEEEEEESTTSSHHHHHHHHHTCS
T ss_pred CCCEEEEECCCCChHHHHHHHHhCCC
Confidence 45789999999999999999998643
No 344
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=97.01 E-value=0.0011 Score=51.46 Aligned_cols=29 Identities=24% Similarity=0.421 Sum_probs=25.2
Q ss_pred CCccEEEEEeCCCCcHHHHHHHHHhHHhh
Q 035585 45 VNVNIVGVYGMGGIGKTTLVKEFARQASE 73 (183)
Q Consensus 45 ~~~~~v~i~G~~G~GKTtL~~~~~~~~~~ 73 (183)
.+..+++|+|++|+|||||++.+...+..
T Consensus 53 ~~g~~v~i~G~~GaGKSTLl~~l~g~~~~ 81 (337)
T 2qm8_A 53 GRAIRVGITGVPGVGKSTTIDALGSLLTA 81 (337)
T ss_dssp CCSEEEEEECCTTSCHHHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHhhhh
Confidence 45679999999999999999999877654
No 345
>2j9r_A Thymidine kinase; TK1, DNK, lasso, transferase, ATP-binding, deoxyribonucleoside kinase, DNA synthesis, phosphate accept nucleotide-binding; HET: THM; 2.7A {Bacillus anthracis} PDB: 2ja1_A*
Probab=97.00 E-value=0.00011 Score=53.53 Aligned_cols=112 Identities=15% Similarity=0.197 Sum_probs=54.8
Q ss_pred CCccEEEEEeCCCCcHHHHHHHHHhHHhhhhcccceEEEEecCCcCHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHHhc
Q 035585 45 VNVNIVGVYGMGGIGKTTLVKEFARQASEEKLFDQVVFSEVSQTPDIKKIHGEIAEKLGLEFSEEAESRRASRLYERLKK 124 (183)
Q Consensus 45 ~~~~~v~i~G~~G~GKTtL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~ 124 (183)
.+..+.+++|+-|+||||.+...+.+.... ...++.+....+... -...+.+.++......... ....++..+.
T Consensus 26 ~~G~l~vitG~MgsGKTT~lL~~a~r~~~~--g~kVli~k~~~d~R~--ge~~i~s~~g~~~~a~~~~-~~~~~~~~~~- 99 (214)
T 2j9r_A 26 QNGWIEVICGSMFSGKSEELIRRVRRTQFA--KQHAIVFKPCIDNRY--SEEDVVSHNGLKVKAVPVS-ASKDIFKHIT- 99 (214)
T ss_dssp CSCEEEEEECSTTSCHHHHHHHHHHHHHHT--TCCEEEEECC-------------------CCEEECS-SGGGGGGGCC-
T ss_pred CCCEEEEEECCCCCcHHHHHHHHHHHHHHC--CCEEEEEEeccCCcc--hHHHHHhhcCCeeEEeecC-CHHHHHHHHh-
Confidence 344688899999999999999988888765 334445444333211 1123333333221110000 0012222221
Q ss_pred CCeEEEEEeCCCCc--ccccccCcCCCCCCCCcEEEEEecChH
Q 035585 125 EKMILVILDNIWKY--LDLETVGIPFGDDHRGCKLLLTARDCN 165 (183)
Q Consensus 125 ~~~~llvlD~~~~~--~~~~~l~~~~~~~~~~~~iiitsr~~~ 165 (183)
+.--+|+|||++-. +.++.+ ..+.+ .+..||++.++-+
T Consensus 100 ~~~dvViIDEaQF~~~~~V~~l-~~l~~--~~~~Vi~~Gl~~D 139 (214)
T 2j9r_A 100 EEMDVIAIDEVQFFDGDIVEVV-QVLAN--RGYRVIVAGLDQD 139 (214)
T ss_dssp SSCCEEEECCGGGSCTTHHHHH-HHHHH--TTCEEEEEECSBC
T ss_pred cCCCEEEEECcccCCHHHHHHH-HHHhh--CCCEEEEEecccc
Confidence 23459999999754 234333 22222 3778999999544
No 346
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=96.99 E-value=0.00056 Score=54.04 Aligned_cols=27 Identities=22% Similarity=0.058 Sum_probs=23.4
Q ss_pred CCccEEEEEeCCCCcHHHHHHHHHhHH
Q 035585 45 VNVNIVGVYGMGGIGKTTLVKEFARQA 71 (183)
Q Consensus 45 ~~~~~v~i~G~~G~GKTtL~~~~~~~~ 71 (183)
.....++|+|++|+|||||++.+....
T Consensus 167 ~~~~~i~l~G~~GsGKSTl~~~l~~~~ 193 (377)
T 1svm_A 167 PKKRYWLFKGPIDSGKTTLAAALLELC 193 (377)
T ss_dssp TTCCEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhhc
Confidence 455799999999999999999998754
No 347
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=96.99 E-value=0.00045 Score=53.40 Aligned_cols=25 Identities=24% Similarity=0.251 Sum_probs=22.3
Q ss_pred cEEEEEeCCCCcHHHHHHHHHhHHh
Q 035585 48 NIVGVYGMGGIGKTTLVKEFARQAS 72 (183)
Q Consensus 48 ~~v~i~G~~G~GKTtL~~~~~~~~~ 72 (183)
.+++|+|++|+|||||++.++..+.
T Consensus 6 ~~i~i~GptGsGKTtla~~La~~l~ 30 (323)
T 3crm_A 6 PAIFLMGPTAAGKTDLAMALADALP 30 (323)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHSC
T ss_pred cEEEEECCCCCCHHHHHHHHHHHcC
Confidence 4799999999999999999988754
No 348
>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*
Probab=96.99 E-value=0.00027 Score=55.42 Aligned_cols=27 Identities=33% Similarity=0.459 Sum_probs=23.1
Q ss_pred CccEEEEEeCCCCcHHHHHHHHHhHHh
Q 035585 46 NVNIVGVYGMGGIGKTTLVKEFARQAS 72 (183)
Q Consensus 46 ~~~~v~i~G~~G~GKTtL~~~~~~~~~ 72 (183)
...+++|.|++|+|||||++.++....
T Consensus 30 ~Ge~~~llGpnGsGKSTLLr~iaGl~~ 56 (353)
T 1oxx_K 30 NGERFGILGPSGAGKTTFMRIIAGLDV 56 (353)
T ss_dssp TTCEEEEECSCHHHHHHHHHHHHTSSC
T ss_pred CCCEEEEECCCCCcHHHHHHHHhCCCC
Confidence 447899999999999999999986543
No 349
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=96.99 E-value=0.00048 Score=53.03 Aligned_cols=26 Identities=23% Similarity=0.373 Sum_probs=22.9
Q ss_pred ccEEEEEeCCCCcHHHHHHHHHhHHh
Q 035585 47 VNIVGVYGMGGIGKTTLVKEFARQAS 72 (183)
Q Consensus 47 ~~~v~i~G~~G~GKTtL~~~~~~~~~ 72 (183)
..+++|.||+|+|||+|+..++..+.
T Consensus 3 ~~~i~i~GptgsGKt~la~~La~~~~ 28 (322)
T 3exa_A 3 EKLVAIVGPTAVGKTKTSVMLAKRLN 28 (322)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHTTT
T ss_pred CcEEEEECCCcCCHHHHHHHHHHhCc
Confidence 46889999999999999999987664
No 350
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=96.98 E-value=0.00053 Score=51.93 Aligned_cols=23 Identities=22% Similarity=0.648 Sum_probs=20.7
Q ss_pred CccEEEEEeCCCCcHHHHHHHHH
Q 035585 46 NVNIVGVYGMGGIGKTTLVKEFA 68 (183)
Q Consensus 46 ~~~~v~i~G~~G~GKTtL~~~~~ 68 (183)
++.+|+|+|++|+||||+++.+.
T Consensus 74 ~~~iI~I~G~~GSGKSTva~~La 96 (281)
T 2f6r_A 74 GLYVLGLTGISGSGKSSVAQRLK 96 (281)
T ss_dssp TCEEEEEEECTTSCHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHH
Confidence 35689999999999999999988
No 351
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=96.98 E-value=0.00048 Score=53.59 Aligned_cols=25 Identities=28% Similarity=0.339 Sum_probs=22.6
Q ss_pred cEEEEEeCCCCcHHHHHHHHHhHHh
Q 035585 48 NIVGVYGMGGIGKTTLVKEFARQAS 72 (183)
Q Consensus 48 ~~v~i~G~~G~GKTtL~~~~~~~~~ 72 (183)
.+++|.|++|+|||||+..++..+.
T Consensus 8 ~lI~I~GptgSGKTtla~~La~~l~ 32 (340)
T 3d3q_A 8 FLIVIVGPTASGKTELSIEVAKKFN 32 (340)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHTT
T ss_pred ceEEEECCCcCcHHHHHHHHHHHcC
Confidence 4899999999999999999988764
No 352
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=96.98 E-value=0.00043 Score=53.80 Aligned_cols=26 Identities=23% Similarity=0.391 Sum_probs=23.2
Q ss_pred ccEEEEEeCCCCcHHHHHHHHHhHHh
Q 035585 47 VNIVGVYGMGGIGKTTLVKEFARQAS 72 (183)
Q Consensus 47 ~~~v~i~G~~G~GKTtL~~~~~~~~~ 72 (183)
..+++|+||+|+|||+|+..++.++.
T Consensus 40 ~~lIvI~GPTgsGKTtLa~~LA~~l~ 65 (339)
T 3a8t_A 40 EKLLVLMGATGTGKSRLSIDLAAHFP 65 (339)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHTTSC
T ss_pred CceEEEECCCCCCHHHHHHHHHHHCC
Confidence 46899999999999999999998764
No 353
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=96.97 E-value=0.00066 Score=49.87 Aligned_cols=27 Identities=22% Similarity=0.320 Sum_probs=23.2
Q ss_pred CCccEEEEEeCCCCcHHHHHHHHHhHH
Q 035585 45 VNVNIVGVYGMGGIGKTTLVKEFARQA 71 (183)
Q Consensus 45 ~~~~~v~i~G~~G~GKTtL~~~~~~~~ 71 (183)
.+...++|+|++|+||||+++.+...+
T Consensus 14 ~~~~~i~i~G~~gsGKst~~~~l~~~l 40 (236)
T 1q3t_A 14 MKTIQIAIDGPASSGKSTVAKIIAKDF 40 (236)
T ss_dssp CCCCEEEEECSSCSSHHHHHHHHHHHH
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHHHc
Confidence 345689999999999999999998755
No 354
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=96.97 E-value=0.00047 Score=49.06 Aligned_cols=24 Identities=33% Similarity=0.567 Sum_probs=20.9
Q ss_pred cEEEEEeCCCCcHHHHHHHHHhHH
Q 035585 48 NIVGVYGMGGIGKTTLVKEFARQA 71 (183)
Q Consensus 48 ~~v~i~G~~G~GKTtL~~~~~~~~ 71 (183)
-.++|+|++|+|||||++.+....
T Consensus 6 ~kv~lvG~~g~GKSTLl~~l~~~~ 29 (199)
T 2f9l_A 6 FKVVLIGDSGVGKSNLLSRFTRNE 29 (199)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHSC
T ss_pred EEEEEECcCCCCHHHHHHHHhcCC
Confidence 458899999999999999998753
No 355
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=96.97 E-value=0.00056 Score=52.52 Aligned_cols=27 Identities=22% Similarity=0.204 Sum_probs=23.4
Q ss_pred CccEEEEEeCCCCcHHHHHHHHHhHHh
Q 035585 46 NVNIVGVYGMGGIGKTTLVKEFARQAS 72 (183)
Q Consensus 46 ~~~~v~i~G~~G~GKTtL~~~~~~~~~ 72 (183)
.+.+++|.||+|+|||+|+..++..+.
T Consensus 9 ~~~~i~i~GptgsGKt~la~~La~~~~ 35 (316)
T 3foz_A 9 LPKAIFLMGPTASGKTALAIELRKILP 35 (316)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHHHSC
T ss_pred CCcEEEEECCCccCHHHHHHHHHHhCC
Confidence 356889999999999999999987754
No 356
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=96.94 E-value=0.00057 Score=51.92 Aligned_cols=23 Identities=35% Similarity=0.556 Sum_probs=20.7
Q ss_pred cEEEEEeCCCCcHHHHHHHHHhH
Q 035585 48 NIVGVYGMGGIGKTTLVKEFARQ 70 (183)
Q Consensus 48 ~~v~i~G~~G~GKTtL~~~~~~~ 70 (183)
.++.|.|++|+||||+++.+...
T Consensus 3 ~~I~l~G~~GsGKST~a~~L~~~ 25 (301)
T 1ltq_A 3 KIILTIGCPGSGKSTWAREFIAK 25 (301)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHh
Confidence 57899999999999999998874
No 357
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=96.92 E-value=0.0004 Score=54.53 Aligned_cols=28 Identities=32% Similarity=0.378 Sum_probs=24.2
Q ss_pred CccEEEEEeCCCCcHHHHHHHHHhHHhh
Q 035585 46 NVNIVGVYGMGGIGKTTLVKEFARQASE 73 (183)
Q Consensus 46 ~~~~v~i~G~~G~GKTtL~~~~~~~~~~ 73 (183)
+...++|+|++|+|||||++.+...+..
T Consensus 174 ~G~~i~ivG~sGsGKSTll~~l~~~~~~ 201 (361)
T 2gza_A 174 LERVIVVAGETGSGKTTLMKALMQEIPF 201 (361)
T ss_dssp TTCCEEEEESSSSCHHHHHHHHHTTSCT
T ss_pred cCCEEEEECCCCCCHHHHHHHHHhcCCC
Confidence 3468999999999999999999887654
No 358
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1
Probab=96.91 E-value=0.0005 Score=53.03 Aligned_cols=26 Identities=27% Similarity=0.455 Sum_probs=22.8
Q ss_pred CccEEEEEeCCCCcHHHHHHHHHhHH
Q 035585 46 NVNIVGVYGMGGIGKTTLVKEFARQA 71 (183)
Q Consensus 46 ~~~~v~i~G~~G~GKTtL~~~~~~~~ 71 (183)
+.++++|+|++|+|||||++.+....
T Consensus 3 ~i~v~~i~G~~GaGKTTll~~l~~~~ 28 (318)
T 1nij_A 3 PIAVTLLTGFLGAGKTTLLRHILNEQ 28 (318)
T ss_dssp CEEEEEEEESSSSSCHHHHHHHHHSC
T ss_pred cccEEEEEecCCCCHHHHHHHHHhhc
Confidence 45789999999999999999998654
No 359
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=96.91 E-value=0.00098 Score=51.01 Aligned_cols=25 Identities=20% Similarity=0.357 Sum_probs=21.7
Q ss_pred ccEEEEEeCCCCcHHHHHHHHHhHHh
Q 035585 47 VNIVGVYGMGGIGKTTLVKEFARQAS 72 (183)
Q Consensus 47 ~~~v~i~G~~G~GKTtL~~~~~~~~~ 72 (183)
..+++|.|++|+|||||++.+. ...
T Consensus 165 G~i~~l~G~sG~GKSTLln~l~-~~~ 189 (302)
T 2yv5_A 165 GFICILAGPSGVGKSSILSRLT-GEE 189 (302)
T ss_dssp TCEEEEECSTTSSHHHHHHHHH-SCC
T ss_pred CcEEEEECCCCCCHHHHHHHHH-Hhh
Confidence 3689999999999999999998 543
No 360
>2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV}
Probab=96.89 E-value=0.0027 Score=46.56 Aligned_cols=39 Identities=21% Similarity=0.100 Sum_probs=29.8
Q ss_pred cEEEEEeCCCCcHHHHHHHHHhHHhhhhcccceEEEEecCC
Q 035585 48 NIVGVYGMGGIGKTTLVKEFARQASEEKLFDQVVFSEVSQT 88 (183)
Q Consensus 48 ~~v~i~G~~G~GKTtL~~~~~~~~~~~~~~~~~~~~~~~~~ 88 (183)
-.+.+.|++|+||||++..+...+..+. ..+.++.+...
T Consensus 7 l~I~~~~kgGvGKTt~a~~la~~l~~~G--~~V~v~d~D~q 45 (228)
T 2r8r_A 7 LKVFLGAAPGVGKTYAMLQAAHAQLRQG--VRVMAGVVETH 45 (228)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHHHHHTT--CCEEEEECCCT
T ss_pred EEEEEECCCCCcHHHHHHHHHHHHHHCC--CCEEEEEeCCC
Confidence 3588899999999999999999887652 24556666554
No 361
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=96.89 E-value=0.00041 Score=50.83 Aligned_cols=26 Identities=31% Similarity=0.323 Sum_probs=22.4
Q ss_pred CCccEEEEEeCCCCcHHHHHHHHHhH
Q 035585 45 VNVNIVGVYGMGGIGKTTLVKEFARQ 70 (183)
Q Consensus 45 ~~~~~v~i~G~~G~GKTtL~~~~~~~ 70 (183)
.+..+++|.|++|+||||+++.+...
T Consensus 18 ~~g~~i~i~G~~GsGKSTl~~~L~~~ 43 (230)
T 2vp4_A 18 TQPFTVLIEGNIGSGKTTYLNHFEKY 43 (230)
T ss_dssp CCCEEEEEECSTTSCHHHHHHTTGGG
T ss_pred CCceEEEEECCCCCCHHHHHHHHHhc
Confidence 34568999999999999999998765
No 362
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1
Probab=96.89 E-value=0.00056 Score=53.67 Aligned_cols=27 Identities=26% Similarity=0.368 Sum_probs=23.6
Q ss_pred ccEEEEEeCCCCcHHHHHHHHHhHHhh
Q 035585 47 VNIVGVYGMGGIGKTTLVKEFARQASE 73 (183)
Q Consensus 47 ~~~v~i~G~~G~GKTtL~~~~~~~~~~ 73 (183)
...++|+|++|+|||||++.+...+..
T Consensus 170 g~k~~IvG~nGsGKSTLlk~L~gl~~~ 196 (365)
T 1lw7_A 170 AKTVAILGGESSGKSVLVNKLAAVFNT 196 (365)
T ss_dssp CEEEEEECCTTSHHHHHHHHHHHHTTC
T ss_pred hCeEEEECCCCCCHHHHHHHHHHHhCC
Confidence 367999999999999999999887654
No 363
>1g8f_A Sulfate adenylyltransferase; alpha-beta protein, beta-barrel, rossmann-fold, kinase fold; 1.95A {Saccharomyces cerevisiae} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1g8g_A* 1g8h_A* 1j70_A 1jec_A 1jed_A* 1jee_A*
Probab=96.89 E-value=0.0013 Score=53.89 Aligned_cols=47 Identities=6% Similarity=-0.046 Sum_probs=35.8
Q ss_pred cccchHHHHHHHHHHhc--cCCccEEEEEeCCCCcHHHHHHHHHhHHhh
Q 035585 27 AFKSRLSTLKSIQDALT--DVNVNIVGVYGMGGIGKTTLVKEFARQASE 73 (183)
Q Consensus 27 ~~~gR~~~l~~l~~~l~--~~~~~~v~i~G~~G~GKTtL~~~~~~~~~~ 73 (183)
..+.|.+..+.+.+... .....++.+.|.+|+||||+++.+..++..
T Consensus 373 ~~f~rpeV~~vLr~~~~~~~~~~~~I~l~GlsGsGKSTIa~~La~~L~~ 421 (511)
T 1g8f_A 373 EWFSYPEVVKILRESNPPRPKQGFSIVLGNSLTVSREQLSIALLSTFLQ 421 (511)
T ss_dssp TTTSCHHHHHHHHHHSCCGGGCCEEEEECTTCCSCHHHHHHHHHHHHTT
T ss_pred ccccChhhHHHHHHhcccccccceEEEecccCCCCHHHHHHHHHHHHHH
Confidence 34456666667777652 334568999999999999999999999874
No 364
>2gk6_A Regulator of nonsense transcripts 1; UPF1, helicase, NMD, hydrolase; HET: ADP; 2.40A {Homo sapiens} PDB: 2gjk_A* 2gk7_A 2xzo_A* 2xzp_A
Probab=96.88 E-value=0.0024 Score=53.69 Aligned_cols=63 Identities=14% Similarity=0.168 Sum_probs=41.1
Q ss_pred HHHHHHHHHHhccCCccEEEEEeCCCCcHHHHHHHHHhHHhhhhcccceEEEEecCCcCHHHHHHHHH
Q 035585 32 LSTLKSIQDALTDVNVNIVGVYGMGGIGKTTLVKEFARQASEEKLFDQVVFSEVSQTPDIKKIHGEIA 99 (183)
Q Consensus 32 ~~~l~~l~~~l~~~~~~~v~i~G~~G~GKTtL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 99 (183)
+.+.+.+...+. .+..+|+|++|+|||+++..+...+... ....+.+.+.++.+...+...+.
T Consensus 183 ~~Q~~av~~~l~---~~~~li~GppGTGKT~~~~~~i~~l~~~--~~~~ilv~a~tn~A~~~l~~~l~ 245 (624)
T 2gk6_A 183 HSQVYAVKTVLQ---RPLSLIQGPPGTGKTVTSATIVYHLARQ--GNGPVLVCAPSNIAVDQLTEKIH 245 (624)
T ss_dssp HHHHHHHHHHHT---CSEEEEECCTTSCHHHHHHHHHHHHHTS--SSCCEEEEESSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhc---CCCeEEECCCCCCHHHHHHHHHHHHHHc--CCCeEEEEeCcHHHHHHHHHHHH
Confidence 334444444442 3578999999999999988887766532 23355666777666666665553
No 365
>4hlc_A DTMP kinase, thymidylate kinase; TMK, MRSA, pipiridine, transfera transferase inhibitor complex; HET: T05; 1.55A {Staphylococcus aureus subsp} PDB: 2cck_A 4gfd_A* 4gsy_A* 4hdc_A* 4hej_A* 2ccj_A* 4hld_A* 2ccg_A*
Probab=96.87 E-value=0.0099 Score=42.77 Aligned_cols=49 Identities=18% Similarity=0.293 Sum_probs=32.7
Q ss_pred cEEEEEeCCCCcHHHHHHHHHhHHhhhhcccceEEEEecCCcCHHHHHHHHH
Q 035585 48 NIVGVYGMGGIGKTTLVKEFARQASEEKLFDQVVFSEVSQTPDIKKIHGEIA 99 (183)
Q Consensus 48 ~~v~i~G~~G~GKTtL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 99 (183)
..|++-|..|+||||+++.+...+... + .+++..-+.....-+..+.++
T Consensus 3 kFI~~EG~dGsGKsTq~~~L~~~L~~~--~-~v~~~~eP~~t~~g~~ir~~l 51 (205)
T 4hlc_A 3 AFITFEGPEGSGKTTVINEVYHRLVKD--Y-DVIMTREPGGVPTGEEIRKIV 51 (205)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHHTTT--S-CEEEEESSTTCHHHHHHHHHH
T ss_pred CEEEEECCCCCcHHHHHHHHHHHHHCC--C-CEEEeeCCCCChHHHHHHHHH
Confidence 367888999999999999999988532 2 344444444444444444444
No 366
>3io3_A DEHA2D07832P; chaperone, membrane traffic, ATPase; HET: ADP; 1.80A {Debaryomyces hansenii}
Probab=96.87 E-value=0.0022 Score=50.05 Aligned_cols=43 Identities=26% Similarity=0.327 Sum_probs=31.4
Q ss_pred hccCCccEEEEEeCCCCcHHHHHHHHHhHHh--hhhcccceEEEEec
Q 035585 42 LTDVNVNIVGVYGMGGIGKTTLVKEFARQAS--EEKLFDQVVFSEVS 86 (183)
Q Consensus 42 l~~~~~~~v~i~G~~G~GKTtL~~~~~~~~~--~~~~~~~~~~~~~~ 86 (183)
+.....+++.+.|.+|+||||++..++..+. .. -..+..+++.
T Consensus 13 l~~~~~~i~~~~gkGGvGKTt~a~~lA~~la~~~~--g~~vllid~D 57 (348)
T 3io3_A 13 VQHDSLKWIFVGGKGGVGKTTTSSSVAVQLALAQP--NEQFLLISTD 57 (348)
T ss_dssp HTCTTCSEEEEECSTTSSHHHHHHHHHHHHHHHCT--TSCEEEEECC
T ss_pred hcCCCcEEEEEeCCCCCcHHHHHHHHHHHHHHhcC--CCeEEEEECC
Confidence 3355668999999999999999999988777 33 2234454444
No 367
>3f9v_A Minichromosome maintenance protein MCM; replicative helicase, DNA replication, MCM complex, AAA+ Pro ATP-binding, DNA-binding, helicase; 4.35A {Sulfolobus solfataricus}
Probab=96.86 E-value=0.00037 Score=58.29 Aligned_cols=48 Identities=15% Similarity=0.110 Sum_probs=34.8
Q ss_pred cccccchHHHHHHHHHHhccCCcc-----------EEEEEeCCCCcHHHHHHHHHhHHh
Q 035585 25 YEAFKSRLSTLKSIQDALTDVNVN-----------IVGVYGMGGIGKTTLVKEFARQAS 72 (183)
Q Consensus 25 ~~~~~gR~~~l~~l~~~l~~~~~~-----------~v~i~G~~G~GKTtL~~~~~~~~~ 72 (183)
...++|.+.....+...+...... .++++|++|+|||+||+.++....
T Consensus 294 ~~~I~G~e~vk~al~~~l~~g~~~~~~~~~~r~~~~vLL~GppGtGKT~LAr~la~~~~ 352 (595)
T 3f9v_A 294 APSIYGHWELKEALALALFGGVPKVLEDTRIRGDIHILIIGDPGTAKSQMLQFISRVAP 352 (595)
T ss_dssp SSTTSCCHHHHHHHTTTTTCCCCEETTTTEECCSCCEEEEESSCCTHHHHHHSSSTTCS
T ss_pred cchhcChHHHHHHHHHHHhCCCcccccCCCcCCCcceEEECCCchHHHHHHHHHHHhCC
Confidence 356788887666665544433211 699999999999999999987653
No 368
>2orv_A Thymidine kinase; TP4A (P1-(5'-adenosyl)P4-(5'- (2'deoxythymidil))tetraphosphate, transferase; HET: 4TA; 2.30A {Homo sapiens} SCOP: c.37.1.24 g.39.1.14
Probab=96.86 E-value=0.00037 Score=51.26 Aligned_cols=110 Identities=10% Similarity=0.032 Sum_probs=56.7
Q ss_pred CccEEEEEeCCCCcHHHHHHHHHhHHhhhhcccceEEEEecCCcCHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHHhcC
Q 035585 46 NVNIVGVYGMGGIGKTTLVKEFARQASEEKLFDQVVFSEVSQTPDIKKIHGEIAEKLGLEFSEEAESRRASRLYERLKKE 125 (183)
Q Consensus 46 ~~~~v~i~G~~G~GKTtL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~ 125 (183)
...+.+++|+-|+||||.+...+.+.... ...++.+....+... . ..+.+.++......... ....++... .
T Consensus 18 ~g~l~v~~G~MgsGKTT~lL~~~~r~~~~--g~kvli~kp~~D~Ry-g--~~i~sr~G~~~~a~~i~-~~~di~~~~--~ 89 (234)
T 2orv_A 18 RGQIQVILGPMFSGKSTELMRRVRRFQIA--QYKCLVIKYAKDTRY-S--SSFCTHDRNTMEALPAC-LLRDVAQEA--L 89 (234)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHHHHHTT--TCCEEEEEETTCCCC--------------CEEEEES-SGGGGHHHH--T
T ss_pred ceEEEEEECCCCCcHHHHHHHHHHHHHHC--CCeEEEEeecCCccc-h--HHHHhhcCCeeEEEecC-CHHHHHHHh--c
Confidence 34688899999999998888877777654 334555554433211 1 23333333221110000 001122222 3
Q ss_pred CeEEEEEeCCCCcccccccCcCCCCCCCCcEEEEEecChH
Q 035585 126 KMILVILDNIWKYLDLETVGIPFGDDHRGCKLLLTARDCN 165 (183)
Q Consensus 126 ~~~llvlD~~~~~~~~~~l~~~~~~~~~~~~iiitsr~~~ 165 (183)
.--+|+|||++-...+..+...+.+ .|..||++.++-+
T Consensus 90 ~~dvViIDEaQF~~~v~el~~~l~~--~gi~VI~~GL~~D 127 (234)
T 2orv_A 90 GVAVIGIDEGQFFPDIVEFCEAMAN--AGKTVIVAALDGT 127 (234)
T ss_dssp TCSEEEESSGGGCTTHHHHHHHHHH--TTCEEEEECCSBC
T ss_pred cCCEEEEEchhhhhhHHHHHHHHHh--CCCEEEEEecccc
Confidence 3459999998755444444333333 5778999999833
No 369
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=96.85 E-value=0.0011 Score=46.55 Aligned_cols=26 Identities=19% Similarity=0.193 Sum_probs=22.0
Q ss_pred CCccEEEEEeCCCCcHHHHHHHHHhH
Q 035585 45 VNVNIVGVYGMGGIGKTTLVKEFARQ 70 (183)
Q Consensus 45 ~~~~~v~i~G~~G~GKTtL~~~~~~~ 70 (183)
.+...++|+|++|+|||||+..+...
T Consensus 46 ~~~~~i~vvG~~g~GKSsll~~l~~~ 71 (193)
T 2ged_A 46 SYQPSIIIAGPQNSGKTSLLTLLTTD 71 (193)
T ss_dssp CCCCEEEEECCTTSSHHHHHHHHHHS
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhcC
Confidence 34457999999999999999998764
No 370
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=96.84 E-value=0.002 Score=50.33 Aligned_cols=27 Identities=33% Similarity=0.536 Sum_probs=23.8
Q ss_pred ccEEEEEeCCCCcHHHHHHHHHhHHhh
Q 035585 47 VNIVGVYGMGGIGKTTLVKEFARQASE 73 (183)
Q Consensus 47 ~~~v~i~G~~G~GKTtL~~~~~~~~~~ 73 (183)
...++|+|++|+|||||+..+...+..
T Consensus 74 ~~~v~lvG~pgaGKSTLln~L~~~~~~ 100 (349)
T 2www_A 74 AFRVGLSGPPGAGKSTFIEYFGKMLTE 100 (349)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHHH
T ss_pred ceEEEEEcCCCCCHHHHHHHHHHHhhh
Confidence 578999999999999999999886644
No 371
>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}
Probab=96.83 E-value=0.00067 Score=55.00 Aligned_cols=29 Identities=24% Similarity=0.230 Sum_probs=24.6
Q ss_pred CCccEEEEEeCCCCcHHHHHHHHHhHHhh
Q 035585 45 VNVNIVGVYGMGGIGKTTLVKEFARQASE 73 (183)
Q Consensus 45 ~~~~~v~i~G~~G~GKTtL~~~~~~~~~~ 73 (183)
.....++|+|++|+|||||++.++.....
T Consensus 136 ~~Ge~v~IvGpnGsGKSTLlr~L~Gl~~p 164 (460)
T 2npi_A 136 FEGPRVVIVGGSQTGKTSLSRTLCSYALK 164 (460)
T ss_dssp SSCCCEEEEESTTSSHHHHHHHHHHTTHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCcccc
Confidence 35578999999999999999999887643
No 372
>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*
Probab=96.83 E-value=0.0009 Score=53.21 Aligned_cols=26 Identities=23% Similarity=0.480 Sum_probs=23.0
Q ss_pred ccEEEEEeCCCCcHHHHHHHHHhHHh
Q 035585 47 VNIVGVYGMGGIGKTTLVKEFARQAS 72 (183)
Q Consensus 47 ~~~v~i~G~~G~GKTtL~~~~~~~~~ 72 (183)
..+++|.||+|+|||+|+..++..+.
T Consensus 2 ~~~i~i~GptgsGKttla~~La~~~~ 27 (409)
T 3eph_A 2 KKVIVIAGTTGVGKSQLSIQLAQKFN 27 (409)
T ss_dssp CEEEEEEECSSSSHHHHHHHHHHHHT
T ss_pred CcEEEEECcchhhHHHHHHHHHHHCC
Confidence 35789999999999999999988764
No 373
>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*
Probab=96.82 E-value=0.0023 Score=47.33 Aligned_cols=38 Identities=34% Similarity=0.447 Sum_probs=28.5
Q ss_pred CccEEEEEeCCCCcHHHHHHHHHhHHhhhhcccceEEEEec
Q 035585 46 NVNIVGVYGMGGIGKTTLVKEFARQASEEKLFDQVVFSEVS 86 (183)
Q Consensus 46 ~~~~v~i~G~~G~GKTtL~~~~~~~~~~~~~~~~~~~~~~~ 86 (183)
+..++.+.|.+|+||||++..++..+. . -..+..++..
T Consensus 13 ~~~i~~~~GkgGvGKTTl~~~La~~l~-~--g~~v~vvd~D 50 (262)
T 1yrb_A 13 ASMIVVFVGTAGSGKTTLTGEFGRYLE-D--NYKVAYVNLD 50 (262)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHHT-T--TSCEEEEECC
T ss_pred ceEEEEEeCCCCCCHHHHHHHHHHHHH-C--CCeEEEEeCC
Confidence 456788999999999999999998877 4 2234455543
No 374
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=96.80 E-value=0.00092 Score=46.01 Aligned_cols=23 Identities=17% Similarity=0.403 Sum_probs=20.4
Q ss_pred cEEEEEeCCCCcHHHHHHHHHhH
Q 035585 48 NIVGVYGMGGIGKTTLVKEFARQ 70 (183)
Q Consensus 48 ~~v~i~G~~G~GKTtL~~~~~~~ 70 (183)
..++|+|++|+|||||+..+...
T Consensus 4 ~~v~lvG~~gvGKStL~~~l~~~ 26 (165)
T 2wji_A 4 YEIALIGNPNVGKSTIFNALTGE 26 (165)
T ss_dssp EEEEEECSTTSSHHHHHHHHHCC
T ss_pred cEEEEECCCCCCHHHHHHHHhCC
Confidence 46899999999999999999763
No 375
>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*
Probab=96.79 E-value=0.00096 Score=52.12 Aligned_cols=29 Identities=28% Similarity=0.413 Sum_probs=25.0
Q ss_pred CCccEEEEEeCCCCcHHHHHHHHHhHHhh
Q 035585 45 VNVNIVGVYGMGGIGKTTLVKEFARQASE 73 (183)
Q Consensus 45 ~~~~~v~i~G~~G~GKTtL~~~~~~~~~~ 73 (183)
.+...++|.|++|+|||||++.+......
T Consensus 69 ~~Gq~~gIiG~nGaGKTTLl~~I~g~~~~ 97 (347)
T 2obl_A 69 GIGQRIGIFAGSGVGKSTLLGMICNGASA 97 (347)
T ss_dssp ETTCEEEEEECTTSSHHHHHHHHHHHSCC
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcCCCC
Confidence 44579999999999999999999988654
No 376
>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1
Probab=96.78 E-value=0.00096 Score=49.11 Aligned_cols=26 Identities=23% Similarity=0.326 Sum_probs=23.1
Q ss_pred ccEEEEEeCCCCcHHHHHHHHHhHHh
Q 035585 47 VNIVGVYGMGGIGKTTLVKEFARQAS 72 (183)
Q Consensus 47 ~~~v~i~G~~G~GKTtL~~~~~~~~~ 72 (183)
+..++|.|..|+||||+++.+...+.
T Consensus 2 ~~~i~~~G~~g~GKtt~~~~l~~~l~ 27 (241)
T 2ocp_A 2 PRRLSIEGNIAVGKSTFVKLLTKTYP 27 (241)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHHHCT
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHHcC
Confidence 46789999999999999999998874
No 377
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=96.76 E-value=0.00085 Score=48.26 Aligned_cols=27 Identities=22% Similarity=0.231 Sum_probs=23.2
Q ss_pred CccEEEEEeCCCCcHHHHHHHHHhHHh
Q 035585 46 NVNIVGVYGMGGIGKTTLVKEFARQAS 72 (183)
Q Consensus 46 ~~~~v~i~G~~G~GKTtL~~~~~~~~~ 72 (183)
....++|.|++|+|||+|+..+..+..
T Consensus 33 ~g~~ilI~GpsGsGKStLA~~La~~g~ 59 (205)
T 2qmh_A 33 YGLGVLITGDSGVGKSETALELVQRGH 59 (205)
T ss_dssp TTEEEEEECCCTTTTHHHHHHHHTTTC
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHhCC
Confidence 346789999999999999999988754
No 378
>1jr3_D DNA polymerase III, delta subunit; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1jqj_C* 1xxh_A* 1xxi_A* 3glf_A* 3glg_A* 3glh_A* 3gli_A*
Probab=96.75 E-value=0.0079 Score=46.50 Aligned_cols=98 Identities=11% Similarity=-0.093 Sum_probs=58.9
Q ss_pred CCccEEEEEeCCCCcHHHHHHHHHhHHhhhhcccceEEEEecCCcCHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHHhc
Q 035585 45 VNVNIVGVYGMGGIGKTTLVKEFARQASEEKLFDQVVFSEVSQTPDIKKIHGEIAEKLGLEFSEEAESRRASRLYERLKK 124 (183)
Q Consensus 45 ~~~~~v~i~G~~G~GKTtL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~ 124 (183)
.-.+.++++|+.|.||++.+..+...+.... +.....+......+..+ + ...+...-..
T Consensus 16 ~~~~~yl~~G~e~~~~~~~~~~l~~~~~~~~-~~~~~~~~~~~~~~~~~----l----------------~~~~~~~plf 74 (343)
T 1jr3_D 16 GLRAAYLLLGNDPLLLQESQDAVRQVAAAQG-FEEHHTFSIDPNTDWNA----I----------------FSLCQAMSLF 74 (343)
T ss_dssp CCCSEEEEEESCHHHHHHHHHHHHHHHHHHT-CCEEEEEECCTTCCHHH----H----------------HHHHHHHHHC
T ss_pred CCCcEEEEECCcHHHHHHHHHHHHHHHHhCC-CCeeEEEEecCCCCHHH----H----------------HHHhcCcCCc
Confidence 4568999999999999999999988776432 22211222222222211 1 1111111123
Q ss_pred CCeEEEEEeCCCC-c--ccccccCcCCCCCCCCcEEEEEecC
Q 035585 125 EKMILVILDNIWK-Y--LDLETVGIPFGDDHRGCKLLLTARD 163 (183)
Q Consensus 125 ~~~~llvlD~~~~-~--~~~~~l~~~~~~~~~~~~iiitsr~ 163 (183)
.++.++|+|+++. + ...+.+...+....+++.+|+++.+
T Consensus 75 ~~~kvvii~~~~~kl~~~~~~aLl~~le~p~~~~~~il~~~~ 116 (343)
T 1jr3_D 75 ASRQTLLLLLPENGPNAAINEQLLTLTGLLHDDLLLIVRGNK 116 (343)
T ss_dssp CSCEEEEEECCSSCCCTTHHHHHHHHHTTCBTTEEEEEEESC
T ss_pred cCCeEEEEECCCCCCChHHHHHHHHHHhcCCCCeEEEEEcCC
Confidence 6788999999987 4 3455565555555667877777643
No 379
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=96.74 E-value=0.00052 Score=53.27 Aligned_cols=109 Identities=19% Similarity=0.090 Sum_probs=56.7
Q ss_pred ccEEEEEeCCCCcHHHHHHHHHhHHhhhhcccceEEEEecCCcCHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHHhcCC
Q 035585 47 VNIVGVYGMGGIGKTTLVKEFARQASEEKLFDQVVFSEVSQTPDIKKIHGEIAEKLGLEFSEEAESRRASRLYERLKKEK 126 (183)
Q Consensus 47 ~~~v~i~G~~G~GKTtL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 126 (183)
...++|+|++|+|||||++.+...+... .+.+.++-........ ..+.+.. ..+ ........+...+. .+
T Consensus 171 g~~v~i~G~~GsGKTTll~~l~g~~~~~---~g~i~i~~~~e~~~~~----~~~~i~~-~~g-gg~~~r~~la~aL~-~~ 240 (330)
T 2pt7_A 171 GKNVIVCGGTGSGKTTYIKSIMEFIPKE---ERIISIEDTEEIVFKH----HKNYTQL-FFG-GNITSADCLKSCLR-MR 240 (330)
T ss_dssp TCCEEEEESTTSCHHHHHHHGGGGSCTT---SCEEEEESSCCCCCSS----CSSEEEE-ECB-TTBCHHHHHHHHTT-SC
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCcCC---CcEEEECCeecccccc----chhEEEE-EeC-CChhHHHHHHHHhh-hC
Confidence 3689999999999999999998876542 2334433221110000 0000000 000 00111223333344 67
Q ss_pred eEEEEEeCCCCcccccccCcCCCCCCCCcEEEEEecChHHHh
Q 035585 127 MILVILDNIWKYLDLETVGIPFGDDHRGCKLLLTARDCNVLL 168 (183)
Q Consensus 127 ~~llvlD~~~~~~~~~~l~~~~~~~~~~~~iiitsr~~~~~~ 168 (183)
+-+|++||+.....++.+ ..+.. .+..+++|+|+.+...
T Consensus 241 p~ilildE~~~~e~~~~l-~~~~~--g~~tvi~t~H~~~~~~ 279 (330)
T 2pt7_A 241 PDRIILGELRSSEAYDFY-NVLCS--GHKGTLTTLHAGSSEE 279 (330)
T ss_dssp CSEEEECCCCSTHHHHHH-HHHHT--TCCCEEEEEECSSHHH
T ss_pred CCEEEEcCCChHHHHHHH-HHHhc--CCCEEEEEEcccHHHH
Confidence 889999999874333322 22221 1324788888877544
No 380
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=96.72 E-value=0.00085 Score=47.05 Aligned_cols=22 Identities=32% Similarity=0.517 Sum_probs=19.6
Q ss_pred EEEEEeCCCCcHHHHHHHHHhH
Q 035585 49 IVGVYGMGGIGKTTLVKEFARQ 70 (183)
Q Consensus 49 ~v~i~G~~G~GKTtL~~~~~~~ 70 (183)
-++|+|++|+|||||+..+...
T Consensus 4 kv~ivG~~gvGKStLl~~l~~~ 25 (184)
T 2zej_A 4 KLMIVGNTGSGKTTLLQQLMKT 25 (184)
T ss_dssp EEEEESCTTSSHHHHHHHHTCC
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4789999999999999998763
No 381
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=96.71 E-value=0.0011 Score=46.30 Aligned_cols=23 Identities=17% Similarity=0.403 Sum_probs=20.7
Q ss_pred cEEEEEeCCCCcHHHHHHHHHhH
Q 035585 48 NIVGVYGMGGIGKTTLVKEFARQ 70 (183)
Q Consensus 48 ~~v~i~G~~G~GKTtL~~~~~~~ 70 (183)
..++|+|++|+|||||+..+...
T Consensus 8 ~~i~lvG~~gvGKStL~~~l~~~ 30 (188)
T 2wjg_A 8 YEIALIGNPNVGKSTIFNALTGE 30 (188)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTT
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 56899999999999999999864
No 382
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=96.71 E-value=0.001 Score=53.46 Aligned_cols=37 Identities=24% Similarity=0.284 Sum_probs=28.4
Q ss_pred ccEEEEEeCCCCcHHHHHHHHHhHHhhhhcccceEEEEe
Q 035585 47 VNIVGVYGMGGIGKTTLVKEFARQASEEKLFDQVVFSEV 85 (183)
Q Consensus 47 ~~~v~i~G~~G~GKTtL~~~~~~~~~~~~~~~~~~~~~~ 85 (183)
+.+++++|++|+||||++..++..+... -..+.++++
T Consensus 99 ~~vI~ivG~~GvGKTTla~~La~~l~~~--G~kVllv~~ 135 (432)
T 2v3c_C 99 QNVILLVGIQGSGKTTTAAKLARYIQKR--GLKPALIAA 135 (432)
T ss_dssp CCCEEEECCSSSSTTHHHHHHHHHHHHH--HCCEEEECC
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHc--CCeEEEEec
Confidence 4589999999999999999999888754 223455444
No 383
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=96.70 E-value=0.0012 Score=44.71 Aligned_cols=23 Identities=22% Similarity=0.452 Sum_probs=20.3
Q ss_pred cEEEEEeCCCCcHHHHHHHHHhH
Q 035585 48 NIVGVYGMGGIGKTTLVKEFARQ 70 (183)
Q Consensus 48 ~~v~i~G~~G~GKTtL~~~~~~~ 70 (183)
+.++|.|.+|+|||||+..+...
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~~ 24 (161)
T 2dyk_A 2 HKVVIVGRPNVGKSSLFNRLLKK 24 (161)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHC
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 46889999999999999998764
No 384
>2afh_E Nitrogenase iron protein 1; nitrogen fixation, iron-sulfur, metal-binding, molybdenum, oxidoreductase; HET: HCA CFN CLF PGE PG4 P6G 1PE; 2.10A {Azotobacter vinelandii} SCOP: c.37.1.10 PDB: 1g1m_A 1g5p_A 1m1y_E* 1m34_E* 1n2c_E* 1nip_A* 1fp6_A* 2afi_E* 2afk_E* 2nip_A 1de0_A 1xcp_A* 1xdb_A 1xd8_A 1xd9_A* 1g20_E* 1g21_E* 2c8v_A* 1rw4_A
Probab=96.69 E-value=0.0032 Score=47.50 Aligned_cols=40 Identities=25% Similarity=0.442 Sum_probs=31.4
Q ss_pred ccEEEEEeCCCCcHHHHHHHHHhHHhhhhcccceEEEEecCC
Q 035585 47 VNIVGVYGMGGIGKTTLVKEFARQASEEKLFDQVVFSEVSQT 88 (183)
Q Consensus 47 ~~~v~i~G~~G~GKTtL~~~~~~~~~~~~~~~~~~~~~~~~~ 88 (183)
.++++|.|.+|+||||++..++..+... -..++.+++...
T Consensus 2 MkvIavs~KGGvGKTT~a~nLA~~La~~--G~rVlliD~D~q 41 (289)
T 2afh_E 2 MRQCAIYGKGGIGKSTTTQNLVAALAEM--GKKVMIVGCDPK 41 (289)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHHHHHHT--TCCEEEEEECSS
T ss_pred ceEEEEeCCCcCcHHHHHHHHHHHHHHC--CCeEEEEecCCC
Confidence 3577788999999999999999988764 335777777644
No 385
>1cp2_A CP2, nitrogenase iron protein; oxidoreductase; 1.93A {Clostridium pasteurianum} SCOP: c.37.1.10
Probab=96.68 E-value=0.003 Score=46.99 Aligned_cols=39 Identities=23% Similarity=0.405 Sum_probs=30.7
Q ss_pred cEEEEEeCCCCcHHHHHHHHHhHHhhhhcccceEEEEecCC
Q 035585 48 NIVGVYGMGGIGKTTLVKEFARQASEEKLFDQVVFSEVSQT 88 (183)
Q Consensus 48 ~~v~i~G~~G~GKTtL~~~~~~~~~~~~~~~~~~~~~~~~~ 88 (183)
++++|.|.+|+||||++..++..+... -..++.+++...
T Consensus 2 ~vI~vs~KGGvGKTT~a~nLA~~la~~--G~~VlliD~D~q 40 (269)
T 1cp2_A 2 RQVAIYGKGGIGKSTTTQNLTSGLHAM--GKTIMVVGCDPK 40 (269)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHHHHTT--TCCEEEEEECTT
T ss_pred cEEEEecCCCCcHHHHHHHHHHHHHHC--CCcEEEEcCCCC
Confidence 467778999999999999999988764 335777777643
No 386
>3l0o_A Transcription termination factor RHO; helicase, RHO factor, RNA capture mechanism, ATP-binding, hydrolase, nucleotide-binding, RN binding; 2.35A {Thermotoga maritima}
Probab=96.68 E-value=0.0007 Score=53.62 Aligned_cols=30 Identities=27% Similarity=0.180 Sum_probs=25.2
Q ss_pred CCccEEEEEeCCCCcHHHHHHHHHhHHhhh
Q 035585 45 VNVNIVGVYGMGGIGKTTLVKEFARQASEE 74 (183)
Q Consensus 45 ~~~~~v~i~G~~G~GKTtL~~~~~~~~~~~ 74 (183)
.+.+-.+|.|++|+|||+|+..+++....+
T Consensus 173 grGQR~lIfg~~g~GKT~Ll~~Ia~~i~~~ 202 (427)
T 3l0o_A 173 GKGQRGMIVAPPKAGKTTILKEIANGIAEN 202 (427)
T ss_dssp BTTCEEEEEECTTCCHHHHHHHHHHHHHHH
T ss_pred cCCceEEEecCCCCChhHHHHHHHHHHhhc
Confidence 455788999999999999999998877653
No 387
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=96.67 E-value=0.0013 Score=54.01 Aligned_cols=27 Identities=22% Similarity=0.061 Sum_probs=23.1
Q ss_pred ccEEEEEeCCCCcHHHHHHHHHhHHhh
Q 035585 47 VNIVGVYGMGGIGKTTLVKEFARQASE 73 (183)
Q Consensus 47 ~~~v~i~G~~G~GKTtL~~~~~~~~~~ 73 (183)
...++|+|++|+||||+++.+...+..
T Consensus 260 g~~i~I~GptGSGKTTlL~aL~~~i~~ 286 (511)
T 2oap_1 260 KFSAIVVGETASGKTTTLNAIMMFIPP 286 (511)
T ss_dssp TCCEEEEESTTSSHHHHHHHHGGGSCT
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhCCC
Confidence 356999999999999999999876643
No 388
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=96.67 E-value=0.0018 Score=49.47 Aligned_cols=26 Identities=23% Similarity=0.455 Sum_probs=22.2
Q ss_pred ccEEEEEeCCCCcHHHHHHHHHhHHh
Q 035585 47 VNIVGVYGMGGIGKTTLVKEFARQAS 72 (183)
Q Consensus 47 ~~~v~i~G~~G~GKTtL~~~~~~~~~ 72 (183)
..+++|.|++|+|||||++.+.....
T Consensus 169 geiv~l~G~sG~GKSTll~~l~g~~~ 194 (301)
T 1u0l_A 169 GKISTMAGLSGVGKSSLLNAINPGLK 194 (301)
T ss_dssp SSEEEEECSTTSSHHHHHHHHSTTCC
T ss_pred CCeEEEECCCCCcHHHHHHHhccccc
Confidence 35899999999999999999876544
No 389
>3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_A*
Probab=96.66 E-value=0.0016 Score=46.90 Aligned_cols=26 Identities=23% Similarity=0.282 Sum_probs=22.0
Q ss_pred ccEEEEEeCCCCcHHHHHHHHHhHHh
Q 035585 47 VNIVGVYGMGGIGKTTLVKEFARQAS 72 (183)
Q Consensus 47 ~~~v~i~G~~G~GKTtL~~~~~~~~~ 72 (183)
..+.+|+|++|+||||++.++..-+.
T Consensus 23 ~~~~~I~G~NgsGKStil~ai~~~l~ 48 (203)
T 3qks_A 23 EGINLIIGQNGSGKSSLLDAILVGLY 48 (203)
T ss_dssp SEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred CCeEEEEcCCCCCHHHHHHHHHHHhc
Confidence 46889999999999999999875443
No 390
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=96.65 E-value=0.0013 Score=44.57 Aligned_cols=22 Identities=32% Similarity=0.604 Sum_probs=19.7
Q ss_pred EEEEEeCCCCcHHHHHHHHHhH
Q 035585 49 IVGVYGMGGIGKTTLVKEFARQ 70 (183)
Q Consensus 49 ~v~i~G~~G~GKTtL~~~~~~~ 70 (183)
.++++|.+|+|||||+..+...
T Consensus 5 ~i~v~G~~~~GKssl~~~l~~~ 26 (166)
T 2ce2_X 5 KLVVVGAGGVGKSALTIQLIQN 26 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 5889999999999999998764
No 391
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=96.63 E-value=0.0013 Score=44.87 Aligned_cols=24 Identities=21% Similarity=0.520 Sum_probs=20.7
Q ss_pred cEEEEEeCCCCcHHHHHHHHHhHH
Q 035585 48 NIVGVYGMGGIGKTTLVKEFARQA 71 (183)
Q Consensus 48 ~~v~i~G~~G~GKTtL~~~~~~~~ 71 (183)
-.++|+|.+|+|||||+..+....
T Consensus 6 ~~i~v~G~~~~GKssl~~~l~~~~ 29 (168)
T 1z2a_A 6 IKMVVVGNGAVGKSSMIQRYCKGI 29 (168)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHCC
T ss_pred EEEEEECcCCCCHHHHHHHHHcCC
Confidence 458899999999999999988643
No 392
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=96.63 E-value=0.0087 Score=46.47 Aligned_cols=30 Identities=30% Similarity=0.361 Sum_probs=25.5
Q ss_pred cCCccEEEEEeCCCCcHHHHHHHHHhHHhh
Q 035585 44 DVNVNIVGVYGMGGIGKTTLVKEFARQASE 73 (183)
Q Consensus 44 ~~~~~~v~i~G~~G~GKTtL~~~~~~~~~~ 73 (183)
..+...++|+|++|+|||||+..+...+..
T Consensus 53 ~~~~~~i~i~G~~g~GKSTl~~~l~~~~~~ 82 (341)
T 2p67_A 53 CGNTLRLGVTGTPGAGKSTFLEAFGMLLIR 82 (341)
T ss_dssp CSCSEEEEEEECTTSCHHHHHHHHHHHHHH
T ss_pred cCCCEEEEEEcCCCCCHHHHHHHHHHHHHh
Confidence 456678999999999999999999877654
No 393
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=96.63 E-value=0.0013 Score=45.75 Aligned_cols=23 Identities=26% Similarity=0.348 Sum_probs=20.5
Q ss_pred cEEEEEeCCCCcHHHHHHHHHhH
Q 035585 48 NIVGVYGMGGIGKTTLVKEFARQ 70 (183)
Q Consensus 48 ~~v~i~G~~G~GKTtL~~~~~~~ 70 (183)
..++|+|.+|+|||||+..+...
T Consensus 5 ~ki~ivG~~g~GKStLl~~l~~~ 27 (172)
T 2gj8_A 5 MKVVIAGRPNAGKSSLLNALAGR 27 (172)
T ss_dssp EEEEEEESTTSSHHHHHHHHHTS
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 46889999999999999999864
No 394
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=96.62 E-value=0.00076 Score=48.17 Aligned_cols=27 Identities=19% Similarity=0.185 Sum_probs=22.1
Q ss_pred CCccEEEEEeCCCCcHHHHHHHHHhHH
Q 035585 45 VNVNIVGVYGMGGIGKTTLVKEFARQA 71 (183)
Q Consensus 45 ~~~~~v~i~G~~G~GKTtL~~~~~~~~ 71 (183)
.+...++|+|++|+|||||++.+....
T Consensus 24 ~~~~~v~lvG~~g~GKSTLl~~l~g~~ 50 (210)
T 1pui_A 24 DTGIEVAFAGRSNAGKSSALNTLTNQK 50 (210)
T ss_dssp SCSEEEEEEECTTSSHHHHHTTTCCC-
T ss_pred CCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 445679999999999999999887544
No 395
>3e1s_A Exodeoxyribonuclease V, subunit RECD; alpha and beta protein, ATP-binding, nucleotide-binding, HYD; 2.20A {Deinococcus radiodurans} PDB: 3gp8_A 3gpl_A*
Probab=96.61 E-value=0.0056 Score=51.00 Aligned_cols=41 Identities=24% Similarity=0.099 Sum_probs=29.9
Q ss_pred ccEEEEEeCCCCcHHHHHHHHHhHHhhhhcccceEEEEecCCcC
Q 035585 47 VNIVGVYGMGGIGKTTLVKEFARQASEEKLFDQVVFSEVSQTPD 90 (183)
Q Consensus 47 ~~~v~i~G~~G~GKTtL~~~~~~~~~~~~~~~~~~~~~~~~~~~ 90 (183)
.++++|+|++|+||||++..+...+.... ..+.+.+++...
T Consensus 204 ~~~~~I~G~pGTGKTt~i~~l~~~l~~~g---~~Vl~~ApT~~A 244 (574)
T 3e1s_A 204 HRLVVLTGGPGTGKSTTTKAVADLAESLG---LEVGLCAPTGKA 244 (574)
T ss_dssp CSEEEEECCTTSCHHHHHHHHHHHHHHTT---CCEEEEESSHHH
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHHHHhcC---CeEEEecCcHHH
Confidence 47899999999999999999998877642 223344454433
No 396
>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A*
Probab=96.61 E-value=0.0016 Score=51.20 Aligned_cols=25 Identities=28% Similarity=0.359 Sum_probs=21.2
Q ss_pred ccEEEEEeCCCCcHHHHHHHHHhHH
Q 035585 47 VNIVGVYGMGGIGKTTLVKEFARQA 71 (183)
Q Consensus 47 ~~~v~i~G~~G~GKTtL~~~~~~~~ 71 (183)
.++++|+|++|+|||||...++..+
T Consensus 23 ~g~~~i~G~NGaGKTTll~ai~~al 47 (365)
T 3qf7_A 23 SGITVVEGPNGAGKSSLFEAISFAL 47 (365)
T ss_dssp SEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHh
Confidence 3588899999999999999987543
No 397
>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*
Probab=96.60 E-value=0.0011 Score=50.75 Aligned_cols=22 Identities=32% Similarity=0.513 Sum_probs=18.7
Q ss_pred EEEEEeCCCCcHHHHHHHHHhH
Q 035585 49 IVGVYGMGGIGKTTLVKEFARQ 70 (183)
Q Consensus 49 ~v~i~G~~G~GKTtL~~~~~~~ 70 (183)
.++|+|++|+|||||++.++..
T Consensus 20 ~I~lvG~nG~GKSTLl~~L~g~ 41 (301)
T 2qnr_A 20 TLMVVGESGLGKSTLINSLFLT 41 (301)
T ss_dssp EEEEEEETTSSHHHHHHHHHC-
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 4599999999999999998753
No 398
>2h92_A Cytidylate kinase; rossmann fold, transferase; HET: C5P PG4; 2.30A {Staphylococcus aureus}
Probab=96.60 E-value=0.0013 Score=47.51 Aligned_cols=24 Identities=25% Similarity=0.342 Sum_probs=21.3
Q ss_pred cEEEEEeCCCCcHHHHHHHHHhHH
Q 035585 48 NIVGVYGMGGIGKTTLVKEFARQA 71 (183)
Q Consensus 48 ~~v~i~G~~G~GKTtL~~~~~~~~ 71 (183)
.+++|+|++|+||||+++.+...+
T Consensus 4 ~~i~i~G~~gsGkst~~~~l~~~~ 27 (219)
T 2h92_A 4 INIALDGPAAAGKSTIAKRVASEL 27 (219)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHHT
T ss_pred eEEEEECCCCCCHHHHHHHHHHhc
Confidence 478999999999999999987754
No 399
>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A*
Probab=96.60 E-value=0.0014 Score=53.37 Aligned_cols=26 Identities=23% Similarity=0.313 Sum_probs=23.3
Q ss_pred cEEEEEeCCCCcHHHHHHHHHhHHhh
Q 035585 48 NIVGVYGMGGIGKTTLVKEFARQASE 73 (183)
Q Consensus 48 ~~v~i~G~~G~GKTtL~~~~~~~~~~ 73 (183)
.+++|+|++|+|||||++.+...+..
T Consensus 30 e~~~liG~nGsGKSTLl~~l~Gl~~p 55 (483)
T 3euj_A 30 LVTTLSGGNGAGKSTTMAGFVTALIP 55 (483)
T ss_dssp SEEEEECCTTSSHHHHHHHHHHHHCC
T ss_pred ceEEEECCCCCcHHHHHHHHhcCCCC
Confidence 79999999999999999999876654
No 400
>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}
Probab=96.59 E-value=0.0013 Score=52.90 Aligned_cols=29 Identities=24% Similarity=0.410 Sum_probs=24.9
Q ss_pred CCccEEEEEeCCCCcHHHHHHHHHhHHhh
Q 035585 45 VNVNIVGVYGMGGIGKTTLVKEFARQASE 73 (183)
Q Consensus 45 ~~~~~v~i~G~~G~GKTtL~~~~~~~~~~ 73 (183)
.+...++|.|++|+|||||++.++.....
T Consensus 155 ~~Gq~~~IvG~sGsGKSTLl~~Iag~~~~ 183 (438)
T 2dpy_A 155 GRGQRMGLFAGSGVGKSVLLGMMARYTRA 183 (438)
T ss_dssp BTTCEEEEEECTTSSHHHHHHHHHHHSCC
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcccCC
Confidence 45579999999999999999999887643
No 401
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=96.58 E-value=0.0017 Score=44.79 Aligned_cols=25 Identities=28% Similarity=0.376 Sum_probs=21.7
Q ss_pred CccEEEEEeCCCCcHHHHHHHHHhH
Q 035585 46 NVNIVGVYGMGGIGKTTLVKEFARQ 70 (183)
Q Consensus 46 ~~~~v~i~G~~G~GKTtL~~~~~~~ 70 (183)
+...|+|+|.+|+|||||+..+...
T Consensus 7 ~~~~i~v~G~~~~GKssl~~~l~~~ 31 (178)
T 2lkc_A 7 RPPVVTIMGHVDHGKTTLLDAIRHS 31 (178)
T ss_dssp CCCEEEEESCTTTTHHHHHHHHHTT
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 4567999999999999999998753
No 402
>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=96.58 E-value=0.0018 Score=46.53 Aligned_cols=27 Identities=19% Similarity=0.199 Sum_probs=22.8
Q ss_pred CCccEEEEEeCCCCcHHHHHHHHHhHH
Q 035585 45 VNVNIVGVYGMGGIGKTTLVKEFARQA 71 (183)
Q Consensus 45 ~~~~~v~i~G~~G~GKTtL~~~~~~~~ 71 (183)
.+...++|+|++|+|||||+..+....
T Consensus 10 ~~~~~i~~~G~~g~GKTsl~~~l~~~~ 36 (218)
T 1nrj_B 10 SYQPSIIIAGPQNSGKTSLLTLLTTDS 36 (218)
T ss_dssp CCCCEEEEECSTTSSHHHHHHHHHHSS
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 345679999999999999999988654
No 403
>2wjy_A Regulator of nonsense transcripts 1; nonsense mediated decay, zinc-finger, ATP-binding, metal-BIN UPF2, UPF1, helicase, hydrolase; 2.50A {Homo sapiens} PDB: 2wjv_A 2iyk_A
Probab=96.58 E-value=0.0053 Score=53.09 Aligned_cols=62 Identities=15% Similarity=0.181 Sum_probs=40.0
Q ss_pred HHHHHHHHHhccCCccEEEEEeCCCCcHHHHHHHHHhHHhhhhcccceEEEEecCCcCHHHHHHHHH
Q 035585 33 STLKSIQDALTDVNVNIVGVYGMGGIGKTTLVKEFARQASEEKLFDQVVFSEVSQTPDIKKIHGEIA 99 (183)
Q Consensus 33 ~~l~~l~~~l~~~~~~~v~i~G~~G~GKTtL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 99 (183)
.+...+...+. .+.++|+|++|+|||+++..+...+... ....+.+.++++.+...+...+.
T Consensus 360 ~Q~~Av~~~l~---~~~~lI~GppGTGKT~ti~~~i~~l~~~--~~~~ilv~a~tn~A~~~l~~~l~ 421 (800)
T 2wjy_A 360 SQVYAVKTVLQ---RPLSLIQGPPGTGKTVTSATIVYHLARQ--GNGPVLVCAPSNIAVDQLTEKIH 421 (800)
T ss_dssp HHHHHHHHHHT---SSEEEEECCTTSCHHHHHHHHHHHHHTT--CSSCEEEEESSHHHHHHHHHHHH
T ss_pred HHHHHHHHhcc---CCeEEEEcCCCCCHHHHHHHHHHHHHHc--CCCcEEEEcCcHHHHHHHHHHHH
Confidence 33444444442 3688999999999999988887776542 22345566666666665555543
No 404
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=96.58 E-value=0.0012 Score=52.95 Aligned_cols=21 Identities=29% Similarity=0.482 Sum_probs=19.6
Q ss_pred EEEEeCCCCcHHHHHHHHHhH
Q 035585 50 VGVYGMGGIGKTTLVKEFARQ 70 (183)
Q Consensus 50 v~i~G~~G~GKTtL~~~~~~~ 70 (183)
++|+|++|+|||||++.++..
T Consensus 45 vaLvG~nGaGKSTLln~L~G~ 65 (427)
T 2qag_B 45 ILCVGETGLGKSTLMDTLFNT 65 (427)
T ss_dssp EEEECSTTSSSHHHHHHHHTS
T ss_pred EEEECCCCCCHHHHHHHHhCc
Confidence 999999999999999999764
No 405
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=96.57 E-value=0.00083 Score=58.14 Aligned_cols=48 Identities=25% Similarity=0.277 Sum_probs=34.8
Q ss_pred ccccchHHHHHHHHHHhcc-------------CCccEEEEEeCCCCcHHHHHHHHHhHHhh
Q 035585 26 EAFKSRLSTLKSIQDALTD-------------VNVNIVGVYGMGGIGKTTLVKEFARQASE 73 (183)
Q Consensus 26 ~~~~gR~~~l~~l~~~l~~-------------~~~~~v~i~G~~G~GKTtL~~~~~~~~~~ 73 (183)
..+.|-+...+.|.+.+.- .....++++|++|+|||+||+.++.....
T Consensus 477 ~di~gl~~vk~~l~~~v~~~~~~~~~~~~~~~~~~~~vLL~GppGtGKT~Lakala~~~~~ 537 (806)
T 1ypw_A 477 EDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQA 537 (806)
T ss_dssp CSSSCCCCHHHHHHTTTTSSSSSCTTTTCCCCCCCCCCCCBCCTTSSHHHHHHHHHHHHTC
T ss_pred cccccchhhhhhHHHHHHhhhhchHHHHhcCCCCCceeEEECCCCCCHHHHHHHHHHHhCC
Confidence 3455666666666665431 23456899999999999999999998753
No 406
>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=96.57 E-value=0.0034 Score=43.90 Aligned_cols=27 Identities=26% Similarity=0.423 Sum_probs=22.5
Q ss_pred cCCccEEEEEeCCCCcHHHHHHHHHhH
Q 035585 44 DVNVNIVGVYGMGGIGKTTLVKEFARQ 70 (183)
Q Consensus 44 ~~~~~~v~i~G~~G~GKTtL~~~~~~~ 70 (183)
+.+.-.++|+|.+|+|||||+..+...
T Consensus 13 ~~~~~~i~v~G~~~~GKssl~~~l~~~ 39 (187)
T 1zj6_A 13 NHQEHKVIIVGLDNAGKTTILYQFSMN 39 (187)
T ss_dssp TTSCEEEEEEESTTSSHHHHHHHHHTT
T ss_pred CCCccEEEEECCCCCCHHHHHHHHhcC
Confidence 344567899999999999999998853
No 407
>3qkt_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATP binding, DNA bindi MRE11, replication; HET: DNA ANP; 1.90A {Pyrococcus furiosus} PDB: 3qku_A* 1ii8_A 3qks_B* 3qkr_B* 1ii8_B
Probab=96.56 E-value=0.0015 Score=50.72 Aligned_cols=24 Identities=25% Similarity=0.373 Sum_probs=20.8
Q ss_pred CccEEEEEeCCCCcHHHHHHHHHh
Q 035585 46 NVNIVGVYGMGGIGKTTLVKEFAR 69 (183)
Q Consensus 46 ~~~~v~i~G~~G~GKTtL~~~~~~ 69 (183)
..++.+|+|++|+|||+++.+++.
T Consensus 22 ~~~~~~i~G~NGsGKS~lleAi~~ 45 (339)
T 3qkt_A 22 KEGINLIIGQNGSGKSSLLDAILV 45 (339)
T ss_dssp CSEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCCeEEEECCCCCCHHHHHHHHHH
Confidence 347889999999999999998754
No 408
>3gmt_A Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucleotide biosynthesis, nucleotide-BIND transferase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B}
Probab=96.56 E-value=0.0016 Score=47.83 Aligned_cols=24 Identities=21% Similarity=0.196 Sum_probs=21.3
Q ss_pred EEEEEeCCCCcHHHHHHHHHhHHh
Q 035585 49 IVGVYGMGGIGKTTLVKEFARQAS 72 (183)
Q Consensus 49 ~v~i~G~~G~GKTtL~~~~~~~~~ 72 (183)
-++|.|++|+||||+++.+...+.
T Consensus 10 ~~~~~G~pGsGKsT~a~~L~~~~g 33 (230)
T 3gmt_A 10 RLILLGAPGAGKGTQANFIKEKFG 33 (230)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHT
T ss_pred ceeeECCCCCCHHHHHHHHHHHhC
Confidence 478999999999999999988764
No 409
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=96.55 E-value=0.0016 Score=44.28 Aligned_cols=24 Identities=38% Similarity=0.610 Sum_probs=20.3
Q ss_pred cEEEEEeCCCCcHHHHHHHHHhHH
Q 035585 48 NIVGVYGMGGIGKTTLVKEFARQA 71 (183)
Q Consensus 48 ~~v~i~G~~G~GKTtL~~~~~~~~ 71 (183)
-.++|+|.+|+|||||+..+....
T Consensus 4 ~~i~v~G~~~~GKSsli~~l~~~~ 27 (167)
T 1kao_A 4 YKVVVLGSGGVGKSALTVQFVTGT 27 (167)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEEEECCCCCCHHHHHHHHHcCC
Confidence 358999999999999999987543
No 410
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*
Probab=96.55 E-value=0.002 Score=45.30 Aligned_cols=26 Identities=12% Similarity=0.376 Sum_probs=22.3
Q ss_pred CCccEEEEEeCCCCcHHHHHHHHHhH
Q 035585 45 VNVNIVGVYGMGGIGKTTLVKEFARQ 70 (183)
Q Consensus 45 ~~~~~v~i~G~~G~GKTtL~~~~~~~ 70 (183)
.+...++|+|.+|+|||||+..+...
T Consensus 21 ~~~~~i~v~G~~~~GKSsli~~l~~~ 46 (195)
T 1svi_A 21 GGLPEIALAGRSNVGKSSFINSLINR 46 (195)
T ss_dssp SCCCEEEEEEBTTSSHHHHHHHHHTC
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 34567999999999999999999765
No 411
>3kjh_A CO dehydrogenase/acetyl-COA synthase complex, accessory protein COOC; Zn-bound dimer, nickel binding protein, ATPase; 1.90A {Carboxydothermus hydrogenoformans} PDB: 3kjg_A* 3kje_A 3kji_A*
Probab=96.54 E-value=0.0033 Score=46.00 Aligned_cols=39 Identities=23% Similarity=0.451 Sum_probs=30.7
Q ss_pred EEEEeCCCCcHHHHHHHHHhHHhhhhcccceEEEEecCCcC
Q 035585 50 VGVYGMGGIGKTTLVKEFARQASEEKLFDQVVFSEVSQTPD 90 (183)
Q Consensus 50 v~i~G~~G~GKTtL~~~~~~~~~~~~~~~~~~~~~~~~~~~ 90 (183)
|+|.|.+|+||||++..++..+... -..++.+++....+
T Consensus 3 I~vs~kGGvGKTt~a~~LA~~la~~--g~~VlliD~D~~~~ 41 (254)
T 3kjh_A 3 LAVAGKGGVGKTTVAAGLIKIMASD--YDKIYAVDGDPDSC 41 (254)
T ss_dssp EEEECSSSHHHHHHHHHHHHHHTTT--CSCEEEEEECTTSC
T ss_pred EEEecCCCCCHHHHHHHHHHHHHHC--CCeEEEEeCCCCcC
Confidence 4568999999999999999988865 34577777765543
No 412
>2axn_A 6-phosphofructo-2-kinase/fructose-2,6- biphosphatase 3 (6PF-2-K/FRU- 2,6-P2ASE brain/placenta-type...; bifunctional enzyme, EDTA complex; HET: F6P EDT ADP; 2.10A {Homo sapiens} PDB: 2dwo_A* 2dwp_A* 2i1v_B* 3qpu_A* 3qpv_A* 3qpw_A*
Probab=96.53 E-value=0.0019 Score=53.18 Aligned_cols=28 Identities=21% Similarity=0.317 Sum_probs=24.4
Q ss_pred CccEEEEEeCCCCcHHHHHHHHHhHHhh
Q 035585 46 NVNIVGVYGMGGIGKTTLVKEFARQASE 73 (183)
Q Consensus 46 ~~~~v~i~G~~G~GKTtL~~~~~~~~~~ 73 (183)
.+.+|+++|.+|+||||+++.+...+.-
T Consensus 34 ~~~lIvlvGlpGSGKSTia~~La~~L~~ 61 (520)
T 2axn_A 34 SPTVIVMVGLPARGKTYISKKLTRYLNW 61 (520)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHhh
Confidence 4568999999999999999999987754
No 413
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Probab=96.53 E-value=0.0016 Score=44.47 Aligned_cols=23 Identities=35% Similarity=0.511 Sum_probs=20.2
Q ss_pred cEEEEEeCCCCcHHHHHHHHHhH
Q 035585 48 NIVGVYGMGGIGKTTLVKEFARQ 70 (183)
Q Consensus 48 ~~v~i~G~~G~GKTtL~~~~~~~ 70 (183)
--++|+|.+|+|||||+..+...
T Consensus 7 ~~i~v~G~~~~GKssli~~l~~~ 29 (170)
T 1z08_A 7 FKVVLLGEGCVGKTSLVLRYCEN 29 (170)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHC
T ss_pred eEEEEECcCCCCHHHHHHHHHcC
Confidence 45889999999999999998854
No 414
>2c61_A A-type ATP synthase non-catalytic subunit B; hydrolase, H+ ATPase, A1AO, ATP synthesis, hydrogen ION transport, ION transport; 1.5A {Methanosarcina mazei GO1} PDB: 3dsr_A* 3b2q_A* 2rkw_A* 3eiu_A*
Probab=96.52 E-value=0.0069 Score=49.01 Aligned_cols=91 Identities=21% Similarity=0.210 Sum_probs=53.0
Q ss_pred CccEEEEEeCCCCcHHHHHHHHHhHHhhhhcc--cceEEEEec-CCcCHHHHHHHHHHHhC-----------CCchhHH-
Q 035585 46 NVNIVGVYGMGGIGKTTLVKEFARQASEEKLF--DQVVFSEVS-QTPDIKKIHGEIAEKLG-----------LEFSEEA- 110 (183)
Q Consensus 46 ~~~~v~i~G~~G~GKTtL~~~~~~~~~~~~~~--~~~~~~~~~-~~~~~~~~~~~i~~~l~-----------~~~~~~~- 110 (183)
+.+-++|.|.+|+|||+|+.+++........- ..++|+-+. ......++...+...-. ...+...
T Consensus 151 rGQr~~Ifgg~G~GKt~Ll~~Ia~~~~~n~~~~~~~~V~~~iGER~~Ev~e~~~~~~~~g~m~rtvvV~~tsd~p~~~r~ 230 (469)
T 2c61_A 151 RGQKLPIFSASGLPHNEIALQIARQASVPGSESAFAVVFAAMGITNEEAQYFMSDFEKTGALERAVVFLNLADDPAVERI 230 (469)
T ss_dssp TTCBCCEEECTTSCHHHHHHHHHHHCBCTTCSSCEEEEEEEEEECHHHHHHHHHHHHHHSGGGGEEEEEEETTSCHHHHH
T ss_pred cCCEEEEECCCCCCHHHHHHHHHHHHhhccCCCCcEEEEEEccCCcHHHHHHHHHHHhccCccceEEEEECCCCCHHHHH
Confidence 34567788999999999999988776532111 234555444 33456666666654311 0111111
Q ss_pred -HHHHHHHHHHHHh--cCCeEEEEEeCCC
Q 035585 111 -ESRRASRLYERLK--KEKMILVILDNIW 136 (183)
Q Consensus 111 -~~~~~~~~~~~~~--~~~~~llvlD~~~ 136 (183)
.......+-++++ +++.++|++|++.
T Consensus 231 ~~~~~a~tiAEyfrdd~G~dVLl~~Dslt 259 (469)
T 2c61_A 231 VTPRMALTAAEYLAYEHGMHVLVILTDIT 259 (469)
T ss_dssp HHHHHHHHHHHHHHHHHCCEEEEEEECHH
T ss_pred HHHHHHHHHHHHHHHhcCCeEEEEEeCHH
Confidence 1111234445655 5899999999864
No 415
>2xzl_A ATP-dependent helicase NAM7; hydrolase-RNA complex, NMD, RNA degradation, allosteric REGU; HET: ADP 1PE; 2.40A {Saccharomyces cerevisiae}
Probab=96.52 E-value=0.0065 Score=52.59 Aligned_cols=64 Identities=13% Similarity=0.179 Sum_probs=40.8
Q ss_pred HHHHHHHHHHhccCCccEEEEEeCCCCcHHHHHHHHHhHHhhhhcccceEEEEecCCcCHHHHHHHHHH
Q 035585 32 LSTLKSIQDALTDVNVNIVGVYGMGGIGKTTLVKEFARQASEEKLFDQVVFSEVSQTPDIKKIHGEIAE 100 (183)
Q Consensus 32 ~~~l~~l~~~l~~~~~~~v~i~G~~G~GKTtL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 100 (183)
..+.+.+...+. .+.++|.|++|+|||+++..+...+... ....+.+...++.+...+...+.+
T Consensus 363 ~~Q~~Av~~~l~---~~~~lI~GppGTGKT~~i~~~i~~l~~~--~~~~ILv~a~tn~A~d~l~~rL~~ 426 (802)
T 2xzl_A 363 SSQSNAVSHVLQ---RPLSLIQGPPGTGKTVTSATIVYHLSKI--HKDRILVCAPSNVAVDHLAAKLRD 426 (802)
T ss_dssp HHHHHHHHHHTT---CSEEEEECSTTSSHHHHHHHHHHHHHHH--HCCCEEEEESSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhc---CCCEEEECCCCCCHHHHHHHHHHHHHhC--CCCeEEEEcCcHHHHHHHHHHHHh
Confidence 334444444442 3578999999999998888877665432 123455666666666666666544
No 416
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=96.51 E-value=0.0017 Score=44.27 Aligned_cols=23 Identities=22% Similarity=0.458 Sum_probs=20.0
Q ss_pred EEEEEeCCCCcHHHHHHHHHhHH
Q 035585 49 IVGVYGMGGIGKTTLVKEFARQA 71 (183)
Q Consensus 49 ~v~i~G~~G~GKTtL~~~~~~~~ 71 (183)
-++|+|.+|+|||||+..+....
T Consensus 5 ~i~v~G~~~~GKssli~~l~~~~ 27 (170)
T 1ek0_A 5 KLVLLGEAAVGKSSIVLRFVSND 27 (170)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 57899999999999999987543
No 417
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A
Probab=96.51 E-value=0.0018 Score=44.21 Aligned_cols=23 Identities=26% Similarity=0.478 Sum_probs=20.0
Q ss_pred cEEEEEeCCCCcHHHHHHHHHhH
Q 035585 48 NIVGVYGMGGIGKTTLVKEFARQ 70 (183)
Q Consensus 48 ~~v~i~G~~G~GKTtL~~~~~~~ 70 (183)
--++|+|.+|+|||||+..+...
T Consensus 4 ~~i~v~G~~~~GKssli~~l~~~ 26 (170)
T 1g16_A 4 MKILLIGDSGVGKSCLLVRFVED 26 (170)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHC
T ss_pred eEEEEECcCCCCHHHHHHHHHhC
Confidence 45889999999999999998754
No 418
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=96.51 E-value=0.0022 Score=43.51 Aligned_cols=24 Identities=33% Similarity=0.569 Sum_probs=20.7
Q ss_pred cEEEEEeCCCCcHHHHHHHHHhHH
Q 035585 48 NIVGVYGMGGIGKTTLVKEFARQA 71 (183)
Q Consensus 48 ~~v~i~G~~G~GKTtL~~~~~~~~ 71 (183)
-.++|+|.+|+|||||+..+....
T Consensus 5 ~~i~v~G~~~~GKssl~~~l~~~~ 28 (168)
T 1u8z_A 5 HKVIMVGSGGVGKSALTLQFMYDE 28 (168)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEEECCCCCCHHHHHHHHHhCc
Confidence 468999999999999999987643
No 419
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=96.50 E-value=0.0017 Score=44.29 Aligned_cols=24 Identities=25% Similarity=0.472 Sum_probs=20.7
Q ss_pred cEEEEEeCCCCcHHHHHHHHHhHH
Q 035585 48 NIVGVYGMGGIGKTTLVKEFARQA 71 (183)
Q Consensus 48 ~~v~i~G~~G~GKTtL~~~~~~~~ 71 (183)
--++|+|.+|+|||||+..+....
T Consensus 7 ~~i~v~G~~~~GKSsli~~l~~~~ 30 (170)
T 1z0j_A 7 LKVCLLGDTGVGKSSIMWRFVEDS 30 (170)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHSC
T ss_pred eEEEEECcCCCCHHHHHHHHHcCC
Confidence 358899999999999999988654
No 420
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Probab=96.50 E-value=0.0016 Score=44.48 Aligned_cols=23 Identities=43% Similarity=0.842 Sum_probs=20.0
Q ss_pred cEEEEEeCCCCcHHHHHHHHHhH
Q 035585 48 NIVGVYGMGGIGKTTLVKEFARQ 70 (183)
Q Consensus 48 ~~v~i~G~~G~GKTtL~~~~~~~ 70 (183)
-.++|+|.+|+|||||+..+...
T Consensus 4 ~~i~v~G~~~~GKssli~~l~~~ 26 (172)
T 2erx_A 4 YRVAVFGAGGVGKSSLVLRFVKG 26 (172)
T ss_dssp EEEEEECCTTSSHHHHHHHHHTC
T ss_pred eEEEEECCCCCCHHHHHHHHHcC
Confidence 35889999999999999998863
No 421
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=96.50 E-value=0.0017 Score=50.83 Aligned_cols=26 Identities=23% Similarity=0.353 Sum_probs=22.6
Q ss_pred ccEEEEEeCCCCcHHHHHHHHHhHHh
Q 035585 47 VNIVGVYGMGGIGKTTLVKEFARQAS 72 (183)
Q Consensus 47 ~~~v~i~G~~G~GKTtL~~~~~~~~~ 72 (183)
...++|+|++|+|||||++.+.....
T Consensus 215 G~~~~lvG~sG~GKSTLln~L~g~~~ 240 (358)
T 2rcn_A 215 GRISIFAGQSGVGKSSLLNALLGLQN 240 (358)
T ss_dssp TSEEEEECCTTSSHHHHHHHHHCCSS
T ss_pred CCEEEEECCCCccHHHHHHHHhcccc
Confidence 36899999999999999999987654
No 422
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*
Probab=96.50 E-value=0.0018 Score=44.10 Aligned_cols=23 Identities=35% Similarity=0.629 Sum_probs=20.0
Q ss_pred cEEEEEeCCCCcHHHHHHHHHhH
Q 035585 48 NIVGVYGMGGIGKTTLVKEFARQ 70 (183)
Q Consensus 48 ~~v~i~G~~G~GKTtL~~~~~~~ 70 (183)
--++|+|.+|+|||||+..+...
T Consensus 4 ~ki~v~G~~~~GKssli~~l~~~ 26 (167)
T 1c1y_A 4 YKLVVLGSGGVGKSALTVQFVQG 26 (167)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHC
T ss_pred eEEEEECCCCCCHHHHHHHHHcC
Confidence 35889999999999999998864
No 423
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=96.50 E-value=0.002 Score=44.21 Aligned_cols=25 Identities=36% Similarity=0.488 Sum_probs=20.7
Q ss_pred ccEEEEEeCCCCcHHHHHHHHHhHH
Q 035585 47 VNIVGVYGMGGIGKTTLVKEFARQA 71 (183)
Q Consensus 47 ~~~v~i~G~~G~GKTtL~~~~~~~~ 71 (183)
.--++|+|.+|+|||||+..+....
T Consensus 4 ~~ki~i~G~~~vGKSsl~~~l~~~~ 28 (175)
T 2nzj_A 4 LYRVVLLGDPGVGKTSLASLFAGKQ 28 (175)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHCC-
T ss_pred EEEEEEECCCCccHHHHHHHHhcCC
Confidence 3468999999999999999987643
No 424
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...
Probab=96.50 E-value=0.0019 Score=43.92 Aligned_cols=22 Identities=23% Similarity=0.385 Sum_probs=19.3
Q ss_pred EEEEeCCCCcHHHHHHHHHhHH
Q 035585 50 VGVYGMGGIGKTTLVKEFARQA 71 (183)
Q Consensus 50 v~i~G~~G~GKTtL~~~~~~~~ 71 (183)
++|+|.+|+|||+|+..+....
T Consensus 3 i~~~G~~~~GKssl~~~l~~~~ 24 (164)
T 1r8s_A 3 ILMVGLDAAGKTTILYKLKLGE 24 (164)
T ss_dssp EEEECSTTSSHHHHHHHHHHHC
T ss_pred EEEECCCCCCHHHHHHHHHcCC
Confidence 7899999999999999987543
No 425
>3zq6_A Putative arsenical pump-driving ATPase; tail-anchored, membrane protein; HET: ADP; 2.11A {Methanothermobacter thermautotrophicusorganism_taxid}
Probab=96.49 E-value=0.0057 Score=47.16 Aligned_cols=38 Identities=24% Similarity=0.267 Sum_probs=28.2
Q ss_pred cEEEEEeCCCCcHHHHHHHHHhHHhhhhcccceEEEEecC
Q 035585 48 NIVGVYGMGGIGKTTLVKEFARQASEEKLFDQVVFSEVSQ 87 (183)
Q Consensus 48 ~~v~i~G~~G~GKTtL~~~~~~~~~~~~~~~~~~~~~~~~ 87 (183)
.++...|.+|+||||++..++..+... -..+..+++..
T Consensus 15 ~i~v~sgKGGvGKTTvA~~LA~~lA~~--G~rVLlvD~D~ 52 (324)
T 3zq6_A 15 TFVFIGGKGGVGKTTISAATALWMARS--GKKTLVISTDP 52 (324)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHHHHT--TCCEEEEECCS
T ss_pred EEEEEeCCCCchHHHHHHHHHHHHHHC--CCcEEEEeCCC
Confidence 566777999999999999999888764 23455555543
No 426
>1m8p_A Sulfate adenylyltransferase; rossmann fold, phosphosulfate binding, T-state; HET: PPS; 2.60A {Penicillium chrysogenum} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1i2d_A*
Probab=96.49 E-value=0.0039 Score=51.89 Aligned_cols=29 Identities=10% Similarity=0.119 Sum_probs=25.1
Q ss_pred CCccEEEEEeCCCCcHHHHHHHHHhHHhh
Q 035585 45 VNVNIVGVYGMGGIGKTTLVKEFARQASE 73 (183)
Q Consensus 45 ~~~~~v~i~G~~G~GKTtL~~~~~~~~~~ 73 (183)
....+|.|.|.+|+||||+++.+...+..
T Consensus 394 q~~~~I~l~GlsGSGKSTiA~~La~~L~~ 422 (573)
T 1m8p_A 394 TQGFTIFLTGYMNSGKDAIARALQVTLNQ 422 (573)
T ss_dssp TCCEEEEEECSTTSSHHHHHHHHHHHHHH
T ss_pred ccceEEEeecCCCCCHHHHHHHHHHHhcc
Confidence 34567999999999999999999988774
No 427
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*
Probab=96.49 E-value=0.0018 Score=44.68 Aligned_cols=23 Identities=30% Similarity=0.590 Sum_probs=20.2
Q ss_pred cEEEEEeCCCCcHHHHHHHHHhH
Q 035585 48 NIVGVYGMGGIGKTTLVKEFARQ 70 (183)
Q Consensus 48 ~~v~i~G~~G~GKTtL~~~~~~~ 70 (183)
--++|+|.+|+|||||+..+...
T Consensus 8 ~~i~v~G~~~~GKSsli~~l~~~ 30 (177)
T 1wms_A 8 FKVILLGDGGVGKSSLMNRYVTN 30 (177)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHcC
Confidence 45899999999999999998754
No 428
>1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ...
Probab=96.49 E-value=0.0008 Score=50.22 Aligned_cols=28 Identities=18% Similarity=0.300 Sum_probs=23.6
Q ss_pred CCccEEEEEeCCCCcHHHHHHHHHhHHh
Q 035585 45 VNVNIVGVYGMGGIGKTTLVKEFARQAS 72 (183)
Q Consensus 45 ~~~~~v~i~G~~G~GKTtL~~~~~~~~~ 72 (183)
.+...|+|.|..|+||||+++.+...+.
T Consensus 22 ~~~~~I~ieG~~GsGKST~~~~L~~~l~ 49 (263)
T 1p5z_B 22 TRIKKISIEGNIAAGKSTFVNILKQLCE 49 (263)
T ss_dssp -CCEEEEEECSTTSSHHHHHTTTGGGCT
T ss_pred cCceEEEEECCCCCCHHHHHHHHHHhcC
Confidence 3557899999999999999999888763
No 429
>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=96.48 E-value=0.0024 Score=44.26 Aligned_cols=25 Identities=24% Similarity=0.341 Sum_probs=21.3
Q ss_pred CCccEEEEEeCCCCcHHHHHHHHHh
Q 035585 45 VNVNIVGVYGMGGIGKTTLVKEFAR 69 (183)
Q Consensus 45 ~~~~~v~i~G~~G~GKTtL~~~~~~ 69 (183)
.+...++|+|++|+|||||+..+..
T Consensus 16 ~~~~~i~v~G~~~~GKssli~~l~~ 40 (183)
T 1moz_A 16 NKELRILILGLDGAGKTTILYRLQI 40 (183)
T ss_dssp SSCEEEEEEEETTSSHHHHHHHTCC
T ss_pred CCccEEEEECCCCCCHHHHHHHHhc
Confidence 4556799999999999999988863
No 430
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Probab=96.48 E-value=0.0018 Score=44.72 Aligned_cols=26 Identities=31% Similarity=0.563 Sum_probs=21.6
Q ss_pred CccEEEEEeCCCCcHHHHHHHHHhHH
Q 035585 46 NVNIVGVYGMGGIGKTTLVKEFARQA 71 (183)
Q Consensus 46 ~~~~v~i~G~~G~GKTtL~~~~~~~~ 71 (183)
+...++|+|.+|+|||||+..+....
T Consensus 7 ~~~~i~v~G~~~~GKSsli~~l~~~~ 32 (182)
T 1ky3_A 7 NILKVIILGDSGVGKTSLMHRYVNDK 32 (182)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHHSC
T ss_pred ceEEEEEECCCCCCHHHHHHHHHhCc
Confidence 34568999999999999999987643
No 431
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*
Probab=96.47 E-value=0.0017 Score=44.25 Aligned_cols=21 Identities=33% Similarity=0.559 Sum_probs=18.7
Q ss_pred EEEEEeCCCCcHHHHHHHHHh
Q 035585 49 IVGVYGMGGIGKTTLVKEFAR 69 (183)
Q Consensus 49 ~v~i~G~~G~GKTtL~~~~~~ 69 (183)
-++|+|.+|+|||||+..+..
T Consensus 4 ki~~vG~~~~GKSsli~~l~~ 24 (166)
T 3q72_A 4 KVLLLGAPGVGKSALARIFGG 24 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHcC
Confidence 478999999999999998864
No 432
>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*
Probab=96.46 E-value=0.002 Score=45.03 Aligned_cols=23 Identities=35% Similarity=0.443 Sum_probs=20.3
Q ss_pred cEEEEEeCCCCcHHHHHHHHHhH
Q 035585 48 NIVGVYGMGGIGKTTLVKEFARQ 70 (183)
Q Consensus 48 ~~v~i~G~~G~GKTtL~~~~~~~ 70 (183)
--++|+|.+|+|||||+..+...
T Consensus 8 ~ki~v~G~~~vGKSsli~~l~~~ 30 (184)
T 1m7b_A 8 CKIVVVGDSQCGKTALLHVFAKD 30 (184)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHhcC
Confidence 45889999999999999998864
No 433
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*
Probab=96.45 E-value=0.0026 Score=43.86 Aligned_cols=25 Identities=32% Similarity=0.582 Sum_probs=21.4
Q ss_pred CccEEEEEeCCCCcHHHHHHHHHhH
Q 035585 46 NVNIVGVYGMGGIGKTTLVKEFARQ 70 (183)
Q Consensus 46 ~~~~v~i~G~~G~GKTtL~~~~~~~ 70 (183)
+...++|+|.+|+|||||+..+...
T Consensus 8 ~~~~i~v~G~~~~GKssli~~l~~~ 32 (181)
T 2fn4_A 8 ETHKLVVVGGGGVGKSALTIQFIQS 32 (181)
T ss_dssp CEEEEEEEECTTSSHHHHHHHHHHS
T ss_pred CceEEEEECCCCCCHHHHHHHHHhC
Confidence 3456899999999999999998865
No 434
>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*
Probab=96.45 E-value=0.002 Score=44.47 Aligned_cols=24 Identities=38% Similarity=0.488 Sum_probs=20.7
Q ss_pred cEEEEEeCCCCcHHHHHHHHHhHH
Q 035585 48 NIVGVYGMGGIGKTTLVKEFARQA 71 (183)
Q Consensus 48 ~~v~i~G~~G~GKTtL~~~~~~~~ 71 (183)
--++|+|.+|+|||+|+..+....
T Consensus 7 ~ki~v~G~~~~GKssl~~~l~~~~ 30 (178)
T 2hxs_A 7 LKIVVLGDGASGKTSLTTCFAQET 30 (178)
T ss_dssp EEEEEECCTTSSHHHHHHHHHGGG
T ss_pred EEEEEECcCCCCHHHHHHHHHhCc
Confidence 458899999999999999988543
No 435
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*
Probab=96.45 E-value=0.0019 Score=44.18 Aligned_cols=21 Identities=38% Similarity=0.578 Sum_probs=18.7
Q ss_pred EEEEEeCCCCcHHHHHHHHHh
Q 035585 49 IVGVYGMGGIGKTTLVKEFAR 69 (183)
Q Consensus 49 ~v~i~G~~G~GKTtL~~~~~~ 69 (183)
-++|+|.+|+|||||+..+..
T Consensus 4 ki~ivG~~~~GKSsli~~l~~ 24 (169)
T 3q85_A 4 KVMLVGESGVGKSTLAGTFGG 24 (169)
T ss_dssp EEEEECSTTSSHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHh
Confidence 478999999999999999864
No 436
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*
Probab=96.45 E-value=0.002 Score=43.93 Aligned_cols=23 Identities=26% Similarity=0.450 Sum_probs=20.0
Q ss_pred cEEEEEeCCCCcHHHHHHHHHhH
Q 035585 48 NIVGVYGMGGIGKTTLVKEFARQ 70 (183)
Q Consensus 48 ~~v~i~G~~G~GKTtL~~~~~~~ 70 (183)
--++|+|.+|+|||||+..+...
T Consensus 7 ~~i~v~G~~~~GKssli~~l~~~ 29 (170)
T 1r2q_A 7 FKLVLLGESAVGKSSLVLRFVKG 29 (170)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHHcC
Confidence 35889999999999999998853
No 437
>4dzz_A Plasmid partitioning protein PARF; deviant walker BOX, DNA segregation, unknown function; HET: ADP; 1.80A {Escherichia coli} PDB: 4e03_A* 4e07_A* 4e09_A*
Probab=96.44 E-value=0.0054 Score=43.54 Aligned_cols=43 Identities=21% Similarity=0.275 Sum_probs=32.1
Q ss_pred cEEEEE-eCCCCcHHHHHHHHHhHHhhhhcccceEEEEecCCcCHH
Q 035585 48 NIVGVY-GMGGIGKTTLVKEFARQASEEKLFDQVVFSEVSQTPDIK 92 (183)
Q Consensus 48 ~~v~i~-G~~G~GKTtL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 92 (183)
+++.|+ +.+|+||||++..++..+... -..+..+++....+..
T Consensus 2 ~vi~v~s~kgG~GKTt~a~~la~~la~~--g~~vlliD~D~~~~~~ 45 (206)
T 4dzz_A 2 KVISFLNPKGGSGKTTAVINIATALSRS--GYNIAVVDTDPQMSLT 45 (206)
T ss_dssp EEEEECCSSTTSSHHHHHHHHHHHHHHT--TCCEEEEECCTTCHHH
T ss_pred eEEEEEeCCCCccHHHHHHHHHHHHHHC--CCeEEEEECCCCCCHH
Confidence 466777 689999999999999988764 3457777876554433
No 438
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=96.44 E-value=0.002 Score=45.13 Aligned_cols=24 Identities=29% Similarity=0.523 Sum_probs=20.7
Q ss_pred cEEEEEeCCCCcHHHHHHHHHhHH
Q 035585 48 NIVGVYGMGGIGKTTLVKEFARQA 71 (183)
Q Consensus 48 ~~v~i~G~~G~GKTtL~~~~~~~~ 71 (183)
-.|+++|.+|+|||||+..+....
T Consensus 22 ~ki~vvG~~~~GKSsli~~l~~~~ 45 (190)
T 3con_A 22 YKLVVVGAGGVGKSALTIQLIQNH 45 (190)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSS
T ss_pred eEEEEECcCCCCHHHHHHHHHcCC
Confidence 468899999999999999998653
No 439
>2gks_A Bifunctional SAT/APS kinase; transferase, sulfurylase; HET: ADP; 2.31A {Aquifex aeolicus}
Probab=96.44 E-value=0.0057 Score=50.65 Aligned_cols=46 Identities=15% Similarity=0.140 Sum_probs=33.7
Q ss_pred cchHHHHHHHHHHh--ccCCccEEEEEeCCCCcHHHHHHHHHhHHhhh
Q 035585 29 KSRLSTLKSIQDAL--TDVNVNIVGVYGMGGIGKTTLVKEFARQASEE 74 (183)
Q Consensus 29 ~gR~~~l~~l~~~l--~~~~~~~v~i~G~~G~GKTtL~~~~~~~~~~~ 74 (183)
+.|.+....+.+.. ......++.++|.+|+||||+++.+...+...
T Consensus 352 ~~r~eV~~~lr~~~~~~~~~~~~I~l~G~~GsGKSTia~~La~~L~~~ 399 (546)
T 2gks_A 352 FTRPEVAEILAETYVPKHKQGFCVWLTGLPCAGKSTIAEILATMLQAR 399 (546)
T ss_dssp TSCHHHHHHHHHHSCCGGGCCEEEEEECSTTSSHHHHHHHHHHHHHHT
T ss_pred ccchhHHHHHHHhhccccccceEEEccCCCCCCHHHHHHHHHHHhhhc
Confidence 34555556666655 23345689999999999999999999887653
No 440
>2woj_A ATPase GET3; tail-anchored, membrane protein, targeting factor, endoplasmic reticulum, TRC40, ATP-binding, golgi apparatus; HET: ADP; 1.99A {Saccharomyces cerevisiae} PDB: 3h84_A 3zs8_A 3zs9_A* 3sja_A 3sjb_A 3sjc_A 3sjd_A* 3idq_A 3a36_A 3a37_A*
Probab=96.43 E-value=0.0086 Score=46.81 Aligned_cols=39 Identities=28% Similarity=0.285 Sum_probs=28.4
Q ss_pred CCccEEEEEeCCCCcHHHHHHHHHhHHh--hhhcccceEEEEe
Q 035585 45 VNVNIVGVYGMGGIGKTTLVKEFARQAS--EEKLFDQVVFSEV 85 (183)
Q Consensus 45 ~~~~~v~i~G~~G~GKTtL~~~~~~~~~--~~~~~~~~~~~~~ 85 (183)
....++...|.+|+||||++..++..+. .. -..+..+++
T Consensus 16 ~~~~i~v~sgKGGvGKTTvaanLA~~lA~~~~--G~rVLLvD~ 56 (354)
T 2woj_A 16 TTHKWIFVGGKGGVGKTTSSCSIAIQMALSQP--NKQFLLIST 56 (354)
T ss_dssp SSCCEEEEEESTTSSHHHHHHHHHHHHHHHCT--TSCEEEEEC
T ss_pred CCcEEEEEeCCCCCcHHHHHHHHHHHHHHhcC--CCeEEEEEC
Confidence 4456777789999999999999998887 43 223445444
No 441
>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A
Probab=96.43 E-value=0.0025 Score=44.56 Aligned_cols=25 Identities=20% Similarity=0.377 Sum_probs=21.5
Q ss_pred ccEEEEEeCCCCcHHHHHHHHHhHH
Q 035585 47 VNIVGVYGMGGIGKTTLVKEFARQA 71 (183)
Q Consensus 47 ~~~v~i~G~~G~GKTtL~~~~~~~~ 71 (183)
...++|+|.+|+|||||+..+....
T Consensus 23 ~~~i~v~G~~~~GKSsli~~l~~~~ 47 (195)
T 3pqc_A 23 KGEVAFVGRSNVGKSSLLNALFNRK 47 (195)
T ss_dssp TCEEEEEEBTTSSHHHHHHHHHTSC
T ss_pred CeEEEEECCCCCCHHHHHHHHHcCc
Confidence 3578999999999999999988653
No 442
>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*
Probab=96.41 E-value=0.0022 Score=45.20 Aligned_cols=25 Identities=24% Similarity=0.344 Sum_probs=20.5
Q ss_pred CccEEEEEeCCCCcHHHHHHHHHhH
Q 035585 46 NVNIVGVYGMGGIGKTTLVKEFARQ 70 (183)
Q Consensus 46 ~~~~v~i~G~~G~GKTtL~~~~~~~ 70 (183)
+...++|+|.+|+|||||+..+...
T Consensus 22 ~~~ki~~vG~~~vGKSsli~~l~~~ 46 (190)
T 1m2o_B 22 KHGKLLFLGLDNAGKTTLLHMLKND 46 (190)
T ss_dssp --CEEEEEESTTSSHHHHHHHHHHS
T ss_pred CccEEEEECCCCCCHHHHHHHHhcC
Confidence 3457899999999999999998863
No 443
>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8
Probab=96.40 E-value=0.0019 Score=45.07 Aligned_cols=22 Identities=23% Similarity=0.410 Sum_probs=19.6
Q ss_pred EEEEEeCCCCcHHHHHHHHHhH
Q 035585 49 IVGVYGMGGIGKTTLVKEFARQ 70 (183)
Q Consensus 49 ~v~i~G~~G~GKTtL~~~~~~~ 70 (183)
-++|+|.+|+|||||+..+...
T Consensus 3 ki~v~G~~~~GKSsli~~l~~~ 24 (190)
T 2cxx_A 3 TIIFAGRSNVGKSTLIYRLTGK 24 (190)
T ss_dssp EEEEEEBTTSSHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHhCc
Confidence 4789999999999999998764
No 444
>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*
Probab=96.40 E-value=0.0023 Score=44.08 Aligned_cols=23 Identities=26% Similarity=0.397 Sum_probs=20.0
Q ss_pred cEEEEEeCCCCcHHHHHHHHHhH
Q 035585 48 NIVGVYGMGGIGKTTLVKEFARQ 70 (183)
Q Consensus 48 ~~v~i~G~~G~GKTtL~~~~~~~ 70 (183)
--++|+|.+|+|||||+..+...
T Consensus 15 ~~i~v~G~~~~GKssli~~l~~~ 37 (179)
T 2y8e_A 15 FKLVFLGEQSVGKTSLITRFMYD 37 (179)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHcC
Confidence 35889999999999999998753
No 445
>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0
Probab=96.40 E-value=0.0021 Score=45.06 Aligned_cols=23 Identities=30% Similarity=0.414 Sum_probs=20.0
Q ss_pred cEEEEEeCCCCcHHHHHHHHHhH
Q 035585 48 NIVGVYGMGGIGKTTLVKEFARQ 70 (183)
Q Consensus 48 ~~v~i~G~~G~GKTtL~~~~~~~ 70 (183)
--++|+|.+|+|||||+..+...
T Consensus 21 ~ki~ivG~~~vGKSsL~~~~~~~ 43 (184)
T 3ihw_A 21 LKVGIVGNLSSGKSALVHRYLTG 43 (184)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHhcC
Confidence 46899999999999999887764
No 446
>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*
Probab=96.39 E-value=0.0022 Score=44.15 Aligned_cols=25 Identities=24% Similarity=0.434 Sum_probs=21.3
Q ss_pred ccEEEEEeCCCCcHHHHHHHHHhHH
Q 035585 47 VNIVGVYGMGGIGKTTLVKEFARQA 71 (183)
Q Consensus 47 ~~~v~i~G~~G~GKTtL~~~~~~~~ 71 (183)
.-.++|+|.+|+|||||+..+....
T Consensus 15 ~~~i~v~G~~~~GKSsli~~l~~~~ 39 (179)
T 1z0f_A 15 IFKYIIIGDMGVGKSCLLHQFTEKK 39 (179)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSC
T ss_pred ceEEEEECCCCCCHHHHHHHHHcCC
Confidence 3468999999999999999988644
No 447
>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*
Probab=96.39 E-value=0.0035 Score=44.47 Aligned_cols=25 Identities=24% Similarity=0.343 Sum_probs=21.0
Q ss_pred CCccEEEEEeCCCCcHHHHHHHHHh
Q 035585 45 VNVNIVGVYGMGGIGKTTLVKEFAR 69 (183)
Q Consensus 45 ~~~~~v~i~G~~G~GKTtL~~~~~~ 69 (183)
.+..-++|+|++|+|||||+..+..
T Consensus 23 ~~~~ki~lvG~~~vGKSsLi~~l~~ 47 (198)
T 1f6b_A 23 KKTGKLVFLGLDNAGKTTLLHMLKD 47 (198)
T ss_dssp TCCEEEEEEEETTSSHHHHHHHHSC
T ss_pred CCCcEEEEECCCCCCHHHHHHHHhc
Confidence 3445689999999999999999864
No 448
>3tqf_A HPR(Ser) kinase; transferase, hydrolase; 2.80A {Coxiella burnetii}
Probab=96.38 E-value=0.0023 Score=44.93 Aligned_cols=24 Identities=25% Similarity=0.221 Sum_probs=21.3
Q ss_pred ccEEEEEeCCCCcHHHHHHHHHhH
Q 035585 47 VNIVGVYGMGGIGKTTLVKEFARQ 70 (183)
Q Consensus 47 ~~~v~i~G~~G~GKTtL~~~~~~~ 70 (183)
..-+++.|++|+||||++..+..+
T Consensus 16 G~gvli~G~SGaGKStlal~L~~r 39 (181)
T 3tqf_A 16 KMGVLITGEANIGKSELSLALIDR 39 (181)
T ss_dssp TEEEEEEESSSSSHHHHHHHHHHT
T ss_pred CEEEEEEcCCCCCHHHHHHHHHHc
Confidence 467899999999999999998874
No 449
>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*
Probab=96.38 E-value=0.0023 Score=44.71 Aligned_cols=23 Identities=22% Similarity=0.378 Sum_probs=20.3
Q ss_pred cEEEEEeCCCCcHHHHHHHHHhH
Q 035585 48 NIVGVYGMGGIGKTTLVKEFARQ 70 (183)
Q Consensus 48 ~~v~i~G~~G~GKTtL~~~~~~~ 70 (183)
--|+|+|.+|+|||||+..+...
T Consensus 12 ~ki~v~G~~~~GKSsli~~l~~~ 34 (195)
T 3bc1_A 12 IKFLALGDSGVGKTSVLYQYTDG 34 (195)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHhcC
Confidence 46899999999999999998864
No 450
>3vr4_D V-type sodium ATPase subunit D; V-ATPase, rotary motor, P-loop, hydrolas ATPase, ATP binding; HET: MSE B3P; 2.17A {Enterococcus hirae} PDB: 3vr3_D* 3vr2_D* 3vr5_D 3vr6_D*
Probab=96.38 E-value=0.01 Score=47.82 Aligned_cols=91 Identities=21% Similarity=0.187 Sum_probs=51.9
Q ss_pred CccEEEEEeCCCCcHHHHHHHHHhHHhhh-hc-ccceEEEEec-CCcCHHHHHHHHHHHh-----------CCCchhHH-
Q 035585 46 NVNIVGVYGMGGIGKTTLVKEFARQASEE-KL-FDQVVFSEVS-QTPDIKKIHGEIAEKL-----------GLEFSEEA- 110 (183)
Q Consensus 46 ~~~~v~i~G~~G~GKTtL~~~~~~~~~~~-~~-~~~~~~~~~~-~~~~~~~~~~~i~~~l-----------~~~~~~~~- 110 (183)
+.+-++|.|.+|+|||+|+.++++..... +. -..++|+-+. ......++...+...- ....+...
T Consensus 150 rGQr~~Ifgg~G~GKt~L~~~Ia~~~~~~~d~~~~~~V~~~iGeR~~Ev~e~~~~~~~~g~~~rtvvV~atsd~p~~~r~ 229 (465)
T 3vr4_D 150 RGQKLPVFSGSGLPHKELAAQIARQATVLDSSDDFAVVFAAIGITFEEAEFFMEDFRQTGAIDRSVMFMNLANDPAIERI 229 (465)
T ss_dssp TTCBCCEEECTTSCHHHHHHHHHHHCBCSSCSSCEEEEEEEEEECHHHHHHHHHHHHHHTGGGGEEEEEEETTSCHHHHH
T ss_pred cCCEEEEeCCCCcChHHHHHHHHHHHHhccCCCceEEEEEEecCCcHHHHHHHHHHhhcCCccceEEEEECCCCCHHHHH
Confidence 33557888999999999999887765431 01 1134555444 3355566666664431 00111111
Q ss_pred -HHHHHHHHHHHHh--cCCeEEEEEeCCC
Q 035585 111 -ESRRASRLYERLK--KEKMILVILDNIW 136 (183)
Q Consensus 111 -~~~~~~~~~~~~~--~~~~~llvlD~~~ 136 (183)
.......+-++++ +++.+||++|++.
T Consensus 230 ~a~~~a~tiAEyfrd~~G~~VLl~~DslT 258 (465)
T 3vr4_D 230 ATPRMALTAAEYLAYEKGMHVLVIMTDMT 258 (465)
T ss_dssp HHHHHHHHHHHHHHHTTCCEEEEEEECHH
T ss_pred HHHHHHHHHHHHHHHhcCCeEEEEEcChH
Confidence 1111234556666 3788999999975
No 451
>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X
Probab=96.37 E-value=0.0018 Score=49.47 Aligned_cols=25 Identities=24% Similarity=0.488 Sum_probs=22.1
Q ss_pred CccEEEEEeCCCCcHHHHHHHHHhH
Q 035585 46 NVNIVGVYGMGGIGKTTLVKEFARQ 70 (183)
Q Consensus 46 ~~~~v~i~G~~G~GKTtL~~~~~~~ 70 (183)
+...++|+|++|+|||||+..+...
T Consensus 7 r~~~VaIvG~~nvGKSTLln~L~g~ 31 (301)
T 1ega_A 7 YCGFIAIVGRPNVGKSTLLNKLLGQ 31 (301)
T ss_dssp EEEEEEEECSSSSSHHHHHHHHHTC
T ss_pred cCCEEEEECCCCCCHHHHHHHHHCC
Confidence 4468999999999999999999865
No 452
>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*
Probab=96.36 E-value=0.0024 Score=44.39 Aligned_cols=24 Identities=29% Similarity=0.427 Sum_probs=20.7
Q ss_pred cEEEEEeCCCCcHHHHHHHHHhHH
Q 035585 48 NIVGVYGMGGIGKTTLVKEFARQA 71 (183)
Q Consensus 48 ~~v~i~G~~G~GKTtL~~~~~~~~ 71 (183)
--++|+|.+|+|||||+..+....
T Consensus 11 ~ki~v~G~~~~GKSsli~~l~~~~ 34 (186)
T 2bme_A 11 FKFLVIGNAGTGKSCLLHQFIEKK 34 (186)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHSS
T ss_pred eEEEEECCCCCCHHHHHHHHHcCC
Confidence 468999999999999999987643
No 453
>1c9k_A COBU, adenosylcobinamide kinase; alpha/beta structure rossmann fold P-loop, transferase; HET: 5GP; 2.20A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1cbu_A
Probab=96.35 E-value=0.0022 Score=45.36 Aligned_cols=21 Identities=19% Similarity=0.202 Sum_probs=19.1
Q ss_pred EEEEeCCCCcHHHHHHHHHhH
Q 035585 50 VGVYGMGGIGKTTLVKEFARQ 70 (183)
Q Consensus 50 v~i~G~~G~GKTtL~~~~~~~ 70 (183)
++|+|.+|+|||++|.++...
T Consensus 2 ilV~Gg~~SGKS~~A~~la~~ 22 (180)
T 1c9k_A 2 ILVTGGARSGKSRHAEALIGD 22 (180)
T ss_dssp EEEEECTTSSHHHHHHHHHCS
T ss_pred EEEECCCCCcHHHHHHHHHhc
Confidence 689999999999999998865
No 454
>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}
Probab=96.35 E-value=0.0023 Score=44.94 Aligned_cols=24 Identities=38% Similarity=0.595 Sum_probs=20.7
Q ss_pred cEEEEEeCCCCcHHHHHHHHHhHH
Q 035585 48 NIVGVYGMGGIGKTTLVKEFARQA 71 (183)
Q Consensus 48 ~~v~i~G~~G~GKTtL~~~~~~~~ 71 (183)
--|+|+|.+|+|||||+..+....
T Consensus 26 ~ki~v~G~~~~GKSsLi~~l~~~~ 49 (193)
T 2oil_A 26 FKVVLIGESGVGKTNLLSRFTRNE 49 (193)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHSC
T ss_pred eEEEEECcCCCCHHHHHHHHhcCC
Confidence 468999999999999999987643
No 455
>3gqb_B V-type ATP synthase beta chain; A3B3, V-ATPase, ATP synthesis, ATP-binding, hydrogen ION TRA hydrolase, ION transport; 2.80A {Thermus thermophilus HB8} PDB: 3a5c_D* 3a5d_D 3j0j_D*
Probab=96.35 E-value=0.011 Score=47.72 Aligned_cols=91 Identities=21% Similarity=0.232 Sum_probs=51.7
Q ss_pred CccEEEEEeCCCCcHHHHHHHHHhHHhhh--------hccc-ceEEEEecC-CcCHHHHHHHHHHHh-----------CC
Q 035585 46 NVNIVGVYGMGGIGKTTLVKEFARQASEE--------KLFD-QVVFSEVSQ-TPDIKKIHGEIAEKL-----------GL 104 (183)
Q Consensus 46 ~~~~v~i~G~~G~GKTtL~~~~~~~~~~~--------~~~~-~~~~~~~~~-~~~~~~~~~~i~~~l-----------~~ 104 (183)
+.+-++|.|.+|+|||+|+.++++..... +.-+ .++|+-+.. .....++...+...- ..
T Consensus 146 rGQr~~Ifgg~G~GKt~L~~~Ia~~~~a~~~~~~~~~d~~~~~~V~~~iGeR~~Ev~e~~~~l~~~g~~~rtvvv~~t~d 225 (464)
T 3gqb_B 146 RGQKLPIFSGSGLPANEIAAQIARQATVRPDLSGEGEKEEPFAVVFAAMGITQRELSYFIQEFERTGALSRSVLFLNKAD 225 (464)
T ss_dssp TTCBCCEEEETTSCHHHHHHHHHHHCBCCHHHHCCCSTTCCEEEEEEEEEECHHHHHHHHHHHHHTSGGGGEEEEEEETT
T ss_pred cCCEEEEecCCCCCchHHHHHHHHHHHhcccccccccCCCceEEEEEEecCchHHHHHHHHHhhhcccccceEEEEECCC
Confidence 34567888999999999999887765431 1111 355554543 345566666654321 00
Q ss_pred CchhH--HHHHHHHHHHHHHh--cCCeEEEEEeCCC
Q 035585 105 EFSEE--AESRRASRLYERLK--KEKMILVILDNIW 136 (183)
Q Consensus 105 ~~~~~--~~~~~~~~~~~~~~--~~~~~llvlD~~~ 136 (183)
..+.. ........+-++++ +++.++|++|++.
T Consensus 226 ~p~~~r~~~~~~a~tiAEyfrd~~G~~VLl~~DdlT 261 (464)
T 3gqb_B 226 DPTIERILTPRMALTVAEYLAFEHDYHVLVILTDMT 261 (464)
T ss_dssp SCTHHHHHHHHHHHHHHHHHHHTTCCEEEEEEETHH
T ss_pred CCHHHHHHHHHHHHHHHHHHHHhcCCeEEEEEcChH
Confidence 11111 11112234556666 3788999999975
No 456
>2o5v_A DNA replication and repair protein RECF; ABC ATPase, walker A motif, P-loop, signature motif, replication/recombination complex; HET: DNA; 1.61A {Deinococcus radiodurans}
Probab=96.35 E-value=0.0024 Score=50.06 Aligned_cols=23 Identities=35% Similarity=0.624 Sum_probs=20.8
Q ss_pred ccEEEEEeCCCCcHHHHHHHHHh
Q 035585 47 VNIVGVYGMGGIGKTTLVKEFAR 69 (183)
Q Consensus 47 ~~~v~i~G~~G~GKTtL~~~~~~ 69 (183)
..+.+|+|++|+||||++..++.
T Consensus 26 ~g~~~i~G~nG~GKttll~ai~~ 48 (359)
T 2o5v_A 26 EGVTGIYGENGAGKTNLLEAAYL 48 (359)
T ss_dssp SEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCeEEEECCCCCChhHHHHHHHH
Confidence 45899999999999999999975
No 457
>2r9v_A ATP synthase subunit alpha; TM1612, structural genomics, JOI for structural genomics, JCSG, protein structure initiative ATP synthesis; HET: ATP PG4; 2.10A {Thermotoga maritima MSB8}
Probab=96.35 E-value=0.013 Score=47.77 Aligned_cols=89 Identities=13% Similarity=0.100 Sum_probs=50.1
Q ss_pred CCccEEEEEeCCCCcHHHHH-HHHHhHHhhhhcccceEEEEecCC-cCHHHHHHHHHHHhC----------CCch-hHHH
Q 035585 45 VNVNIVGVYGMGGIGKTTLV-KEFARQASEEKLFDQVVFSEVSQT-PDIKKIHGEIAEKLG----------LEFS-EEAE 111 (183)
Q Consensus 45 ~~~~~v~i~G~~G~GKTtL~-~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~i~~~l~----------~~~~-~~~~ 111 (183)
.+.+-++|.|++|+|||+|+ ..+++... . -..++|+-+... ....++...+...-. ...+ ....
T Consensus 173 grGQR~~I~g~~g~GKT~Lal~~I~~~~~-~--dv~~V~~~IGeR~~Ev~e~~~~~~~~g~m~rtvvV~atad~p~~~r~ 249 (515)
T 2r9v_A 173 GRGQRELIIGDRQTGKTAIAIDTIINQKG-Q--GVYCIYVAIGQKKSAIARIIDKLRQYGAMEYTTVVVASASDPASLQY 249 (515)
T ss_dssp ETTCBEEEEEETTSSHHHHHHHHHHTTTT-T--TEEEEEEEESCCHHHHHHHHHHHHHTTGGGGEEEEEECTTSCHHHHH
T ss_pred ccCCEEEEEcCCCCCccHHHHHHHHHhhc-C--CcEEEEEEcCCCcHHHHHHHHHHHhCCCcceeEEEEECCCCCHHHHH
Confidence 34467899999999999995 46666542 1 123456555544 455666666654210 0111 1111
Q ss_pred --HHHHHHHHHHHh-cCCeEEEEEeCCC
Q 035585 112 --SRRASRLYERLK-KEKMILVILDNIW 136 (183)
Q Consensus 112 --~~~~~~~~~~~~-~~~~~llvlD~~~ 136 (183)
......+-++++ +++.+||++|++.
T Consensus 250 ~a~~~a~tiAEyfrd~G~dVLli~DslT 277 (515)
T 2r9v_A 250 IAPYAGCAMGEYFAYSGRDALVVYDDLS 277 (515)
T ss_dssp HHHHHHHHHHHHHHTTTCEEEEEEETHH
T ss_pred HHHHHHHHHHHHHHHcCCcEEEEeccHH
Confidence 111223344554 3789999999875
No 458
>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*
Probab=96.34 E-value=0.0032 Score=43.05 Aligned_cols=23 Identities=26% Similarity=0.421 Sum_probs=20.2
Q ss_pred cEEEEEeCCCCcHHHHHHHHHhH
Q 035585 48 NIVGVYGMGGIGKTTLVKEFARQ 70 (183)
Q Consensus 48 ~~v~i~G~~G~GKTtL~~~~~~~ 70 (183)
..++|+|.+|+|||||+..+...
T Consensus 8 ~~i~v~G~~~~GKssl~~~l~~~ 30 (171)
T 1upt_A 8 MRILILGLDGAGKTTILYRLQVG 30 (171)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred cEEEEECCCCCCHHHHHHHHhcC
Confidence 56899999999999999998753
No 459
>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A*
Probab=96.34 E-value=0.0026 Score=44.99 Aligned_cols=22 Identities=41% Similarity=0.533 Sum_probs=19.5
Q ss_pred cEEEEEeCCCCcHHHHHHHHHh
Q 035585 48 NIVGVYGMGGIGKTTLVKEFAR 69 (183)
Q Consensus 48 ~~v~i~G~~G~GKTtL~~~~~~ 69 (183)
--++|+|.+|+|||+|+..+..
T Consensus 7 ~kv~lvG~~~vGKSsL~~~~~~ 28 (192)
T 2cjw_A 7 YRVVLIGEQGVGKSTLANIFAG 28 (192)
T ss_dssp EEEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHhc
Confidence 4589999999999999999874
No 460
>2woo_A ATPase GET3; tail-anchored, membrane protein, targeting factor, endoplasmic reticulum, TRC40, ATP-binding, golgi apparatus; 3.01A {Schizosaccharomyces pombe}
Probab=96.33 E-value=0.0087 Score=46.24 Aligned_cols=40 Identities=30% Similarity=0.334 Sum_probs=29.1
Q ss_pred cCCccEEEEEeCCCCcHHHHHHHHHhHHhhhhcccceEEEEe
Q 035585 44 DVNVNIVGVYGMGGIGKTTLVKEFARQASEEKLFDQVVFSEV 85 (183)
Q Consensus 44 ~~~~~~v~i~G~~G~GKTtL~~~~~~~~~~~~~~~~~~~~~~ 85 (183)
+....++...|.+|+||||++..++..+... -..+..+++
T Consensus 16 ~~~~~i~v~sgkGGvGKTTva~~LA~~lA~~--G~rVllvD~ 55 (329)
T 2woo_A 16 QTSLKWIFVGGKGGVGKTTTSCSLAIQMSKV--RSSVLLIST 55 (329)
T ss_dssp CTTCCEEEEECSSSSSHHHHHHHHHHHHHTS--SSCEEEEEC
T ss_pred CCCCEEEEEeCCCCCcHHHHHHHHHHHHHHC--CCeEEEEEC
Confidence 3445677788999999999999999888754 223455443
No 461
>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*
Probab=96.33 E-value=0.0025 Score=44.36 Aligned_cols=24 Identities=25% Similarity=0.433 Sum_probs=20.5
Q ss_pred cEEEEEeCCCCcHHHHHHHHHhHH
Q 035585 48 NIVGVYGMGGIGKTTLVKEFARQA 71 (183)
Q Consensus 48 ~~v~i~G~~G~GKTtL~~~~~~~~ 71 (183)
--++|+|.+|+|||||+..+....
T Consensus 5 ~ki~v~G~~~~GKSsli~~l~~~~ 28 (189)
T 4dsu_A 5 YKLVVVGADGVGKSALTIQLIQNH 28 (189)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHSS
T ss_pred EEEEEECCCCCCHHHHHHHHHhCC
Confidence 358899999999999999998543
No 462
>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}
Probab=96.32 E-value=0.0025 Score=44.74 Aligned_cols=24 Identities=25% Similarity=0.445 Sum_probs=20.6
Q ss_pred cEEEEEeCCCCcHHHHHHHHHhHH
Q 035585 48 NIVGVYGMGGIGKTTLVKEFARQA 71 (183)
Q Consensus 48 ~~v~i~G~~G~GKTtL~~~~~~~~ 71 (183)
--|+|+|.+|+|||+|+..+....
T Consensus 22 ~ki~vvG~~~vGKTsLi~~l~~~~ 45 (187)
T 3c5c_A 22 VNLAILGRRGAGKSALTVKFLTKR 45 (187)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHSS
T ss_pred EEEEEECCCCCcHHHHHHHHHhCC
Confidence 468999999999999999887643
No 463
>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=96.31 E-value=0.0029 Score=44.48 Aligned_cols=24 Identities=21% Similarity=0.367 Sum_probs=20.7
Q ss_pred cEEEEEeCCCCcHHHHHHHHHhHH
Q 035585 48 NIVGVYGMGGIGKTTLVKEFARQA 71 (183)
Q Consensus 48 ~~v~i~G~~G~GKTtL~~~~~~~~ 71 (183)
--|+|+|.+|+|||||+..+....
T Consensus 24 ~ki~v~G~~~~GKSsli~~l~~~~ 47 (191)
T 3dz8_A 24 FKLLIIGNSSVGKTSFLFRYADDT 47 (191)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHT
T ss_pred eEEEEECCCCcCHHHHHHHHhcCC
Confidence 358999999999999999988654
No 464
>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*
Probab=96.31 E-value=0.0026 Score=44.10 Aligned_cols=24 Identities=33% Similarity=0.594 Sum_probs=20.8
Q ss_pred ccEEEEEeCCCCcHHHHHHHHHhH
Q 035585 47 VNIVGVYGMGGIGKTTLVKEFARQ 70 (183)
Q Consensus 47 ~~~v~i~G~~G~GKTtL~~~~~~~ 70 (183)
...|+|+|.+|+|||||+..+...
T Consensus 18 ~~ki~v~G~~~~GKSsli~~l~~~ 41 (187)
T 2a9k_A 18 LHKVIMVGSGGVGKSALTLQFMYD 41 (187)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHS
T ss_pred ceEEEEECCCCCCHHHHHHHHhhC
Confidence 356899999999999999998854
No 465
>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*
Probab=96.31 E-value=0.0026 Score=44.15 Aligned_cols=24 Identities=33% Similarity=0.562 Sum_probs=20.8
Q ss_pred ccEEEEEeCCCCcHHHHHHHHHhH
Q 035585 47 VNIVGVYGMGGIGKTTLVKEFARQ 70 (183)
Q Consensus 47 ~~~v~i~G~~G~GKTtL~~~~~~~ 70 (183)
.--++|+|.+|+|||||+..+...
T Consensus 18 ~~ki~v~G~~~~GKSsl~~~l~~~ 41 (183)
T 3kkq_A 18 TYKLVVVGDGGVGKSALTIQFFQK 41 (183)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHS
T ss_pred ceEEEEECCCCCCHHHHHHHHHhC
Confidence 346899999999999999998864
No 466
>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*
Probab=96.31 E-value=0.0026 Score=43.96 Aligned_cols=23 Identities=30% Similarity=0.482 Sum_probs=20.2
Q ss_pred cEEEEEeCCCCcHHHHHHHHHhH
Q 035585 48 NIVGVYGMGGIGKTTLVKEFARQ 70 (183)
Q Consensus 48 ~~v~i~G~~G~GKTtL~~~~~~~ 70 (183)
--++|+|.+|+|||||+..+...
T Consensus 13 ~ki~v~G~~~~GKSsli~~l~~~ 35 (181)
T 2efe_B 13 AKLVLLGDVGAGKSSLVLRFVKD 35 (181)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHC
T ss_pred eEEEEECcCCCCHHHHHHHHHcC
Confidence 45899999999999999998764
No 467
>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*
Probab=96.30 E-value=0.0041 Score=43.38 Aligned_cols=26 Identities=31% Similarity=0.415 Sum_probs=21.8
Q ss_pred CCccEEEEEeCCCCcHHHHHHHHHhH
Q 035585 45 VNVNIVGVYGMGGIGKTTLVKEFARQ 70 (183)
Q Consensus 45 ~~~~~v~i~G~~G~GKTtL~~~~~~~ 70 (183)
....-++|+|.+|+|||||+..+...
T Consensus 14 ~~~~ki~ivG~~~vGKSsL~~~l~~~ 39 (181)
T 1fzq_A 14 DQEVRILLLGLDNAGKTTLLKQLASE 39 (181)
T ss_dssp SSCEEEEEEESTTSSHHHHHHHHCCS
T ss_pred CCceEEEEECCCCCCHHHHHHHHhcC
Confidence 34457899999999999999998764
No 468
>3fkq_A NTRC-like two-domain protein; RER070207001320, structural GE joint center for structural genomics, JCSG, protein structu initiative, PSI-2; HET: ATP 2PE; 2.10A {Eubacterium rectale}
Probab=96.30 E-value=0.0082 Score=47.17 Aligned_cols=57 Identities=16% Similarity=0.248 Sum_probs=40.2
Q ss_pred ccchHHHHHHHHHHhc------------cCCccEEEEEe-CCCCcHHHHHHHHHhHHhhhhcccceEEEEec
Q 035585 28 FKSRLSTLKSIQDALT------------DVNVNIVGVYG-MGGIGKTTLVKEFARQASEEKLFDQVVFSEVS 86 (183)
Q Consensus 28 ~~gR~~~l~~l~~~l~------------~~~~~~v~i~G-~~G~GKTtL~~~~~~~~~~~~~~~~~~~~~~~ 86 (183)
+..-+..+..+.+... +.+.++++|+| .+|+||||++..++..+... -..++.+++.
T Consensus 112 yq~~~~i~~ei~~~~~e~~~~~~~~~~~~~~~kvIav~s~KGGvGKTT~a~nLA~~La~~--g~rVlliD~D 181 (373)
T 3fkq_A 112 YQRVDVIFKQILGVYSDMAANVATISGENDKSSVVIFTSPCGGVGTSTVAAACAIAHANM--GKKVFYLNIE 181 (373)
T ss_dssp TSCHHHHHHHHHHHHHHHHHHTCCCCCCTTSCEEEEEECSSTTSSHHHHHHHHHHHHHHH--TCCEEEEECC
T ss_pred cCCHHHHHHHHHHHHhhcccccccccccCCCceEEEEECCCCCChHHHHHHHHHHHHHhC--CCCEEEEECC
Confidence 3344555566655431 24567888885 99999999999999888765 3457788865
No 469
>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...
Probab=96.29 E-value=0.0027 Score=44.05 Aligned_cols=23 Identities=30% Similarity=0.433 Sum_probs=19.9
Q ss_pred cEEEEEeCCCCcHHHHHHHHHhH
Q 035585 48 NIVGVYGMGGIGKTTLVKEFARQ 70 (183)
Q Consensus 48 ~~v~i~G~~G~GKTtL~~~~~~~ 70 (183)
--++|+|.+|+|||||+..+...
T Consensus 6 ~~i~~~G~~~~GKssl~~~l~~~ 28 (186)
T 1mh1_A 6 IKCVVVGDGAVGKTCLLISYTTN 28 (186)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHHcC
Confidence 35889999999999999998754
No 470
>1e69_A Chromosome segregation SMC protein; structural maintenance of chromosomes, coiled coil; 3.1A {Thermotoga maritima} SCOP: c.37.1.12
Probab=96.29 E-value=0.0018 Score=49.84 Aligned_cols=23 Identities=17% Similarity=0.430 Sum_probs=20.7
Q ss_pred ccEEEEEeCCCCcHHHHHHHHHh
Q 035585 47 VNIVGVYGMGGIGKTTLVKEFAR 69 (183)
Q Consensus 47 ~~~v~i~G~~G~GKTtL~~~~~~ 69 (183)
..+.+|+|++|+|||+|+..+..
T Consensus 24 ~g~~~i~G~NGsGKS~ll~ai~~ 46 (322)
T 1e69_A 24 DRVTAIVGPNGSGKSNIIDAIKW 46 (322)
T ss_dssp SSEEEEECCTTTCSTHHHHHHHH
T ss_pred CCcEEEECCCCCcHHHHHHHHHH
Confidence 35899999999999999999984
No 471
>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}
Probab=96.29 E-value=0.0026 Score=44.64 Aligned_cols=24 Identities=17% Similarity=0.362 Sum_probs=20.9
Q ss_pred ccEEEEEeCCCCcHHHHHHHHHhH
Q 035585 47 VNIVGVYGMGGIGKTTLVKEFARQ 70 (183)
Q Consensus 47 ~~~v~i~G~~G~GKTtL~~~~~~~ 70 (183)
.--|+|+|.+|+|||||+..+...
T Consensus 7 ~~ki~v~G~~~~GKSsli~~l~~~ 30 (208)
T 3clv_A 7 SYKTVLLGESSVGKSSIVLRLTKD 30 (208)
T ss_dssp SEEEEEECCTTSSHHHHHHHHHHS
T ss_pred ceEEEEECCCCCCHHHHHHHHHhC
Confidence 345899999999999999998865
No 472
>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=96.29 E-value=0.0027 Score=43.82 Aligned_cols=24 Identities=38% Similarity=0.461 Sum_probs=20.6
Q ss_pred cEEEEEeCCCCcHHHHHHHHHhHH
Q 035585 48 NIVGVYGMGGIGKTTLVKEFARQA 71 (183)
Q Consensus 48 ~~v~i~G~~G~GKTtL~~~~~~~~ 71 (183)
-.++|+|.+|+|||||+..+....
T Consensus 11 ~~i~v~G~~~~GKssli~~l~~~~ 34 (180)
T 2g6b_A 11 FKVMLVGDSGVGKTCLLVRFKDGA 34 (180)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSC
T ss_pred eEEEEECcCCCCHHHHHHHHHhCC
Confidence 458999999999999999987643
No 473
>1bif_A 6-phosphofructo-2-kinase/ fructose-2,6-bisphospha; transferase (phospho), phosphatase, hydrolase (phosp glycolysis, bifunctional enzyme; HET: AGS; 2.00A {Rattus norvegicus} SCOP: c.37.1.7 c.60.1.4 PDB: 3bif_A* 2bif_A* 1k6m_A* 1c80_A* 1c7z_A* 1c81_A* 1tip_A* 1fbt_A
Probab=96.29 E-value=0.0032 Score=51.07 Aligned_cols=28 Identities=21% Similarity=0.286 Sum_probs=24.2
Q ss_pred CccEEEEEeCCCCcHHHHHHHHHhHHhh
Q 035585 46 NVNIVGVYGMGGIGKTTLVKEFARQASE 73 (183)
Q Consensus 46 ~~~~v~i~G~~G~GKTtL~~~~~~~~~~ 73 (183)
....|+++|.+|+||||+++.+...+..
T Consensus 38 ~~~~IvlvGlpGsGKSTia~~La~~l~~ 65 (469)
T 1bif_A 38 CPTLIVMVGLPARGKTYISKKLTRYLNF 65 (469)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHHH
T ss_pred CcEEEEEECCCCCCHHHHHHHHHHHHhc
Confidence 4468999999999999999999987764
No 474
>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8
Probab=96.28 E-value=0.0028 Score=44.58 Aligned_cols=24 Identities=29% Similarity=0.495 Sum_probs=20.8
Q ss_pred cEEEEEeCCCCcHHHHHHHHHhHH
Q 035585 48 NIVGVYGMGGIGKTTLVKEFARQA 71 (183)
Q Consensus 48 ~~v~i~G~~G~GKTtL~~~~~~~~ 71 (183)
--|+|+|.+|+|||||+..+....
T Consensus 24 ~ki~vvG~~~~GKSsli~~l~~~~ 47 (192)
T 2fg5_A 24 LKVCLLGDTGVGKSSIVCRFVQDH 47 (192)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHCC
T ss_pred eEEEEECcCCCCHHHHHHHHhcCC
Confidence 468999999999999999987643
No 475
>3tmk_A Thymidylate kinase; phosphotransferase; HET: T5A; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 2tmk_A* 1tmk_A*
Probab=96.27 E-value=0.0038 Score=45.42 Aligned_cols=27 Identities=19% Similarity=0.262 Sum_probs=24.2
Q ss_pred ccEEEEEeCCCCcHHHHHHHHHhHHhh
Q 035585 47 VNIVGVYGMGGIGKTTLVKEFARQASE 73 (183)
Q Consensus 47 ~~~v~i~G~~G~GKTtL~~~~~~~~~~ 73 (183)
...|.+.|+.|+||||+++.+...+..
T Consensus 5 g~~i~~eG~~g~GKst~~~~l~~~l~~ 31 (216)
T 3tmk_A 5 GKLILIEGLDRTGKTTQCNILYKKLQP 31 (216)
T ss_dssp CCEEEEEECSSSSHHHHHHHHHHHHCS
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhcc
Confidence 468899999999999999999998765
No 476
>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A
Probab=96.26 E-value=0.002 Score=44.58 Aligned_cols=23 Identities=30% Similarity=0.482 Sum_probs=20.2
Q ss_pred cEEEEEeCCCCcHHHHHHHHHhH
Q 035585 48 NIVGVYGMGGIGKTTLVKEFARQ 70 (183)
Q Consensus 48 ~~v~i~G~~G~GKTtL~~~~~~~ 70 (183)
--++|+|.+|+|||+|+..+...
T Consensus 8 ~ki~~vG~~~vGKTsli~~l~~~ 30 (178)
T 2iwr_A 8 LRLGVLGDARSGKSSLIHRFLTG 30 (178)
T ss_dssp EEEEEECCGGGCHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHhC
Confidence 35889999999999999998764
No 477
>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*
Probab=96.26 E-value=0.003 Score=43.76 Aligned_cols=24 Identities=21% Similarity=0.497 Sum_probs=20.6
Q ss_pred ccEEEEEeCCCCcHHHHHHHHHhH
Q 035585 47 VNIVGVYGMGGIGKTTLVKEFARQ 70 (183)
Q Consensus 47 ~~~v~i~G~~G~GKTtL~~~~~~~ 70 (183)
...++|+|.+|+|||||+..+...
T Consensus 6 ~~ki~~~G~~~~GKSsli~~l~~~ 29 (181)
T 3t5g_A 6 SRKIAILGYRSVGKSSLTIQFVEG 29 (181)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHS
T ss_pred eEEEEEECcCCCCHHHHHHHHHcC
Confidence 356899999999999999998843
No 478
>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}
Probab=96.26 E-value=0.0025 Score=43.94 Aligned_cols=24 Identities=29% Similarity=0.512 Sum_probs=20.5
Q ss_pred ccEEEEEeCCCCcHHHHHHHHHhH
Q 035585 47 VNIVGVYGMGGIGKTTLVKEFARQ 70 (183)
Q Consensus 47 ~~~v~i~G~~G~GKTtL~~~~~~~ 70 (183)
..-++|+|.+|+|||||+..+...
T Consensus 9 ~~~i~v~G~~~~GKssl~~~l~~~ 32 (181)
T 3tw8_B 9 LFKLLIIGDSGVGKSSLLLRFADN 32 (181)
T ss_dssp EEEEEEECCTTSCHHHHHHHHCSC
T ss_pred ceEEEEECCCCCCHHHHHHHHhcC
Confidence 346899999999999999998754
No 479
>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C
Probab=96.26 E-value=0.0029 Score=43.78 Aligned_cols=24 Identities=25% Similarity=0.369 Sum_probs=20.4
Q ss_pred ccEEEEEeCCCCcHHHHHHHHHhH
Q 035585 47 VNIVGVYGMGGIGKTTLVKEFARQ 70 (183)
Q Consensus 47 ~~~v~i~G~~G~GKTtL~~~~~~~ 70 (183)
.--++|+|.+|+|||||+..+...
T Consensus 8 ~~ki~v~G~~~~GKssl~~~~~~~ 31 (182)
T 3bwd_D 8 FIKCVTVGDGAVGKTCLLISYTSN 31 (182)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEEECCCCCCHHHHHHHHhcC
Confidence 346889999999999999988754
No 480
>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=96.26 E-value=0.0029 Score=45.14 Aligned_cols=25 Identities=32% Similarity=0.551 Sum_probs=21.1
Q ss_pred ccEEEEEeCCCCcHHHHHHHHHhHH
Q 035585 47 VNIVGVYGMGGIGKTTLVKEFARQA 71 (183)
Q Consensus 47 ~~~v~i~G~~G~GKTtL~~~~~~~~ 71 (183)
.--++|+|.+|+|||||+..+....
T Consensus 26 ~~ki~lvG~~~vGKSsLi~~l~~~~ 50 (201)
T 2ew1_A 26 LFKIVLIGNAGVGKTCLVRRFTQGL 50 (201)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHSS
T ss_pred ceEEEEECcCCCCHHHHHHHHHhCC
Confidence 3468999999999999999987643
No 481
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*
Probab=96.26 E-value=0.0028 Score=44.41 Aligned_cols=24 Identities=33% Similarity=0.260 Sum_probs=19.7
Q ss_pred cEEEEEeCCCCcHHHHHHHHHhHH
Q 035585 48 NIVGVYGMGGIGKTTLVKEFARQA 71 (183)
Q Consensus 48 ~~v~i~G~~G~GKTtL~~~~~~~~ 71 (183)
--++|+|.+|+|||||++.+....
T Consensus 15 ~ki~vvG~~~~GKssL~~~l~~~~ 38 (198)
T 3t1o_A 15 FKIVYYGPGLSGKTTNLKWIYSKV 38 (198)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHTS
T ss_pred cEEEEECCCCCCHHHHHHHHHhhc
Confidence 358999999999999997766544
No 482
>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}
Probab=96.25 E-value=0.0029 Score=44.80 Aligned_cols=25 Identities=32% Similarity=0.566 Sum_probs=21.1
Q ss_pred CccEEEEEeCCCCcHHHHHHHHHhH
Q 035585 46 NVNIVGVYGMGGIGKTTLVKEFARQ 70 (183)
Q Consensus 46 ~~~~v~i~G~~G~GKTtL~~~~~~~ 70 (183)
+..-|+|+|.+|+|||||+..+...
T Consensus 13 ~~~ki~v~G~~~~GKSsli~~l~~~ 37 (206)
T 2bov_A 13 ALHKVIMVGSGGVGKSALTLQFMYD 37 (206)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHS
T ss_pred ceEEEEEECCCCCCHHHHHHHHHhC
Confidence 3456899999999999999998754
No 483
>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}
Probab=96.24 E-value=0.0031 Score=47.21 Aligned_cols=25 Identities=24% Similarity=0.412 Sum_probs=21.4
Q ss_pred ccEEEEEeCCCCcHHHHHHHHHhHH
Q 035585 47 VNIVGVYGMGGIGKTTLVKEFARQA 71 (183)
Q Consensus 47 ~~~v~i~G~~G~GKTtL~~~~~~~~ 71 (183)
...++|+|.+|+|||||+..+....
T Consensus 3 ~~~i~lvG~~g~GKTTL~n~l~g~~ 27 (271)
T 3k53_A 3 LKTVALVGNPNVGKTTIFNALTGLR 27 (271)
T ss_dssp CEEEEEEECSSSSHHHHHHHHHTTC
T ss_pred eeEEEEECCCCCCHHHHHHHHhCCC
Confidence 3578999999999999999987643
No 484
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}
Probab=96.24 E-value=0.0031 Score=46.21 Aligned_cols=27 Identities=15% Similarity=0.131 Sum_probs=22.1
Q ss_pred CCccEEEEEeCCCCcHHHHHHHHHhHH
Q 035585 45 VNVNIVGVYGMGGIGKTTLVKEFARQA 71 (183)
Q Consensus 45 ~~~~~v~i~G~~G~GKTtL~~~~~~~~ 71 (183)
.+...|+|+|.+|+|||||+..+....
T Consensus 27 ~~~~~i~lvG~~g~GKStlin~l~g~~ 53 (239)
T 3lxx_A 27 NSQLRIVLVGKTGAGKSATGNSILGRK 53 (239)
T ss_dssp -CEEEEEEECCTTSSHHHHHHHHHTSC
T ss_pred CCceEEEEECCCCCCHHHHHHHHcCCC
Confidence 345679999999999999999988643
No 485
>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*
Probab=96.24 E-value=0.003 Score=44.26 Aligned_cols=24 Identities=21% Similarity=0.355 Sum_probs=20.7
Q ss_pred cEEEEEeCCCCcHHHHHHHHHhHH
Q 035585 48 NIVGVYGMGGIGKTTLVKEFARQA 71 (183)
Q Consensus 48 ~~v~i~G~~G~GKTtL~~~~~~~~ 71 (183)
--++|+|.+|+|||||+..+....
T Consensus 23 ~ki~vvG~~~~GKSsli~~l~~~~ 46 (189)
T 2gf9_A 23 FKLLLIGNSSVGKTSFLFRYADDS 46 (189)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSC
T ss_pred eEEEEECCCCCCHHHHHHHHHcCC
Confidence 468999999999999999987643
No 486
>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=96.24 E-value=0.0029 Score=44.60 Aligned_cols=25 Identities=28% Similarity=0.590 Sum_probs=21.3
Q ss_pred CccEEEEEeCCCCcHHHHHHHHHhH
Q 035585 46 NVNIVGVYGMGGIGKTTLVKEFARQ 70 (183)
Q Consensus 46 ~~~~v~i~G~~G~GKTtL~~~~~~~ 70 (183)
+.--++|+|.+|+|||||+..+...
T Consensus 27 ~~~ki~v~G~~~vGKSsli~~l~~~ 51 (196)
T 2atv_A 27 AEVKLAIFGRAGVGKSALVVRFLTK 51 (196)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHS
T ss_pred CceEEEEECCCCCCHHHHHHHHHhC
Confidence 3456899999999999999998764
No 487
>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*
Probab=96.23 E-value=0.003 Score=44.80 Aligned_cols=25 Identities=28% Similarity=0.546 Sum_probs=21.2
Q ss_pred ccEEEEEeCCCCcHHHHHHHHHhHH
Q 035585 47 VNIVGVYGMGGIGKTTLVKEFARQA 71 (183)
Q Consensus 47 ~~~v~i~G~~G~GKTtL~~~~~~~~ 71 (183)
.-.|+|+|.+|+|||||+..+....
T Consensus 8 ~~ki~v~G~~~~GKSsli~~l~~~~ 32 (207)
T 1vg8_A 8 LLKVIILGDSGVGKTSLMNQYVNKK 32 (207)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHHSC
T ss_pred ceEEEEECcCCCCHHHHHHHHHcCC
Confidence 3468999999999999999987643
No 488
>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=96.22 E-value=0.0021 Score=51.51 Aligned_cols=22 Identities=32% Similarity=0.517 Sum_probs=19.7
Q ss_pred EEEEeCCCCcHHHHHHHHHhHH
Q 035585 50 VGVYGMGGIGKTTLVKEFARQA 71 (183)
Q Consensus 50 v~i~G~~G~GKTtL~~~~~~~~ 71 (183)
++|+|++|+|||||++.++...
T Consensus 34 I~lvG~sGaGKSTLln~L~g~~ 55 (418)
T 2qag_C 34 LMVVGESGLGKSTLINSLFLTD 55 (418)
T ss_dssp EEEECCTTSSHHHHHHHHTTCC
T ss_pred EEEECCCCCcHHHHHHHHhCCC
Confidence 6999999999999999998654
No 489
>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}
Probab=96.22 E-value=0.0032 Score=44.65 Aligned_cols=26 Identities=27% Similarity=0.434 Sum_probs=21.8
Q ss_pred CccEEEEEeCCCCcHHHHHHHHHhHH
Q 035585 46 NVNIVGVYGMGGIGKTTLVKEFARQA 71 (183)
Q Consensus 46 ~~~~v~i~G~~G~GKTtL~~~~~~~~ 71 (183)
+..-++|+|.+|+|||||+..+....
T Consensus 23 ~~~ki~vvG~~~~GKSsli~~l~~~~ 48 (201)
T 3oes_A 23 RYRKVVILGYRCVGKTSLAHQFVEGE 48 (201)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHHSC
T ss_pred CcEEEEEECCCCcCHHHHHHHHHhCC
Confidence 34568999999999999999988643
No 490
>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8
Probab=96.22 E-value=0.0032 Score=45.08 Aligned_cols=24 Identities=33% Similarity=0.401 Sum_probs=21.0
Q ss_pred ccEEEEEeCCCCcHHHHHHHHHhH
Q 035585 47 VNIVGVYGMGGIGKTTLVKEFARQ 70 (183)
Q Consensus 47 ~~~v~i~G~~G~GKTtL~~~~~~~ 70 (183)
.--++|+|.+|+|||||+..+...
T Consensus 28 ~~ki~vvG~~~vGKSsLi~~l~~~ 51 (205)
T 1gwn_A 28 KCKIVVVGDSQCGKTALLHVFAKD 51 (205)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHS
T ss_pred eeEEEEECCCCCCHHHHHHHHhcC
Confidence 356899999999999999998864
No 491
>1w1w_A Structural maintenance of chromosome 1; cohesin, chromosome segregation, cell adhesion, kleisin, MIT cell cycle; HET: ATG; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.12
Probab=96.21 E-value=0.0031 Score=50.54 Aligned_cols=24 Identities=21% Similarity=0.419 Sum_probs=21.4
Q ss_pred ccEEEEEeCCCCcHHHHHHHHHhH
Q 035585 47 VNIVGVYGMGGIGKTTLVKEFARQ 70 (183)
Q Consensus 47 ~~~v~i~G~~G~GKTtL~~~~~~~ 70 (183)
..+++|+|++|+|||||+..++..
T Consensus 26 ~~~~~i~G~nG~GKstll~ai~~~ 49 (430)
T 1w1w_A 26 SNFTSIIGPNGSGKSNMMDAISFV 49 (430)
T ss_dssp CSEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHhh
Confidence 578999999999999999998753
No 492
>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=96.21 E-value=0.0033 Score=44.24 Aligned_cols=24 Identities=42% Similarity=0.714 Sum_probs=20.8
Q ss_pred ccEEEEEeCCCCcHHHHHHHHHhH
Q 035585 47 VNIVGVYGMGGIGKTTLVKEFARQ 70 (183)
Q Consensus 47 ~~~v~i~G~~G~GKTtL~~~~~~~ 70 (183)
.--|+|+|.+|+|||||+..+...
T Consensus 8 ~~ki~vvG~~~~GKSsli~~l~~~ 31 (199)
T 2gf0_A 8 DYRVVVFGAGGVGKSSLVLRFVKG 31 (199)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHHS
T ss_pred eeEEEEECCCCCcHHHHHHHHHcC
Confidence 356899999999999999998763
No 493
>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*
Probab=96.21 E-value=0.0032 Score=44.16 Aligned_cols=24 Identities=29% Similarity=0.282 Sum_probs=20.6
Q ss_pred cEEEEEeCCCCcHHHHHHHHHhHH
Q 035585 48 NIVGVYGMGGIGKTTLVKEFARQA 71 (183)
Q Consensus 48 ~~v~i~G~~G~GKTtL~~~~~~~~ 71 (183)
--|+|+|.+|+|||||+..+....
T Consensus 23 ~ki~v~G~~~~GKSsli~~l~~~~ 46 (188)
T 1zd9_A 23 MELTLVGLQYSGKTTFVNVIASGQ 46 (188)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSC
T ss_pred cEEEEECCCCCCHHHHHHHHHcCC
Confidence 458999999999999999988543
No 494
>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}
Probab=96.20 E-value=0.0022 Score=45.46 Aligned_cols=22 Identities=36% Similarity=0.567 Sum_probs=19.4
Q ss_pred ccEEEEEeCCCCcHHHHHHHHH
Q 035585 47 VNIVGVYGMGGIGKTTLVKEFA 68 (183)
Q Consensus 47 ~~~v~i~G~~G~GKTtL~~~~~ 68 (183)
.--++|+|.+|+|||||+..+.
T Consensus 23 ~~ki~vvG~~~vGKSsLi~~l~ 44 (195)
T 3cbq_A 23 IFKVMLVGESGVGKSTLAGTFG 44 (195)
T ss_dssp EEEEEEECSTTSSHHHHHHHTC
T ss_pred EEEEEEECCCCCCHHHHHHHHH
Confidence 3468999999999999999985
No 495
>3ug7_A Arsenical pump-driving ATPase; tail-anchored, membrane protein, targeting factor, ATP-bindi TRC40, ARSA, nucleotide-binding; HET: ADP; 2.90A {Methanocaldococcus jannaschii} PDB: 3ug6_A*
Probab=96.20 E-value=0.01 Score=46.25 Aligned_cols=40 Identities=25% Similarity=0.252 Sum_probs=28.3
Q ss_pred CCccEEEEEeCCCCcHHHHHHHHHhHHhhhhcccceEEEEec
Q 035585 45 VNVNIVGVYGMGGIGKTTLVKEFARQASEEKLFDQVVFSEVS 86 (183)
Q Consensus 45 ~~~~~v~i~G~~G~GKTtL~~~~~~~~~~~~~~~~~~~~~~~ 86 (183)
....++...|.+|+||||++..++..+... -..++.+++.
T Consensus 24 ~~~~i~v~sgKGGvGKTTvA~~LA~~lA~~--G~rVLlvD~D 63 (349)
T 3ug7_A 24 DGTKYIMFGGKGGVGKTTMSAATGVYLAEK--GLKVVIVSTD 63 (349)
T ss_dssp CSCEEEEEECSSSTTHHHHHHHHHHHHHHS--SCCEEEEECC
T ss_pred CCCEEEEEeCCCCccHHHHHHHHHHHHHHC--CCeEEEEeCC
Confidence 334566677999999999999998887654 2235555543
No 496
>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8
Probab=96.20 E-value=0.003 Score=44.77 Aligned_cols=24 Identities=21% Similarity=0.391 Sum_probs=20.6
Q ss_pred cEEEEEeCCCCcHHHHHHHHHhHH
Q 035585 48 NIVGVYGMGGIGKTTLVKEFARQA 71 (183)
Q Consensus 48 ~~v~i~G~~G~GKTtL~~~~~~~~ 71 (183)
--|+|+|.+|+|||||+..+....
T Consensus 9 ~ki~v~G~~~~GKSsli~~l~~~~ 32 (203)
T 1zbd_A 9 FKILIIGNSSVGKTSFLFRYADDS 32 (203)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTCC
T ss_pred eEEEEECCCCCCHHHHHHHHhcCC
Confidence 458999999999999999987643
No 497
>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*
Probab=96.20 E-value=0.0032 Score=44.09 Aligned_cols=24 Identities=29% Similarity=0.372 Sum_probs=20.7
Q ss_pred ccEEEEEeCCCCcHHHHHHHHHhH
Q 035585 47 VNIVGVYGMGGIGKTTLVKEFARQ 70 (183)
Q Consensus 47 ~~~v~i~G~~G~GKTtL~~~~~~~ 70 (183)
..-|+|+|.+|+|||||+..+...
T Consensus 20 ~~ki~v~G~~~~GKSsli~~l~~~ 43 (189)
T 1z06_A 20 IFKIIVIGDSNVGKTCLTYRFCAG 43 (189)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHHS
T ss_pred eEEEEEECCCCCCHHHHHHHHHcC
Confidence 356899999999999999998754
No 498
>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*
Probab=96.19 E-value=0.0032 Score=44.22 Aligned_cols=23 Identities=26% Similarity=0.418 Sum_probs=20.0
Q ss_pred cEEEEEeCCCCcHHHHHHHHHhH
Q 035585 48 NIVGVYGMGGIGKTTLVKEFARQ 70 (183)
Q Consensus 48 ~~v~i~G~~G~GKTtL~~~~~~~ 70 (183)
--++|+|.+|+|||||+..+...
T Consensus 22 ~ki~v~G~~~~GKSsli~~l~~~ 44 (191)
T 2a5j_A 22 FKYIIIGDTGVGKSCLLLQFTDK 44 (191)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHS
T ss_pred eEEEEECcCCCCHHHHHHHHhcC
Confidence 35889999999999999998754
No 499
>1x6v_B Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthethase 1; transferase, ATP sulfurylase, APS kinase, PAPS; HET: ADP; 1.75A {Homo sapiens} SCOP: b.122.1.3 c.26.1.5 c.37.1.4 PDB: 1xjq_B* 1xnj_B* 2qjf_A* 2ofx_A* 2ofw_A*
Probab=96.19 E-value=0.004 Score=52.33 Aligned_cols=28 Identities=25% Similarity=0.230 Sum_probs=24.8
Q ss_pred CccEEEEEeCCCCcHHHHHHHHHhHHhh
Q 035585 46 NVNIVGVYGMGGIGKTTLVKEFARQASE 73 (183)
Q Consensus 46 ~~~~v~i~G~~G~GKTtL~~~~~~~~~~ 73 (183)
+..+|.|+|.+|+||||+++.+...+..
T Consensus 51 ~g~lIvLtGlsGSGKSTlAr~La~~L~~ 78 (630)
T 1x6v_B 51 RGCTVWLTGLSGAGKTTVSMALEEYLVC 78 (630)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHHHH
T ss_pred CCCEEEEEeCCCCCHHHHHHHHHHHHHh
Confidence 5578999999999999999999988754
No 500
>2aka_B Dynamin-1; fusion protein, GTPase domain, myosin, contractIle protein; 1.90A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 3l43_A*
Probab=96.18 E-value=0.0074 Score=45.48 Aligned_cols=25 Identities=20% Similarity=0.466 Sum_probs=21.8
Q ss_pred CccEEEEEeCCCCcHHHHHHHHHhH
Q 035585 46 NVNIVGVYGMGGIGKTTLVKEFARQ 70 (183)
Q Consensus 46 ~~~~v~i~G~~G~GKTtL~~~~~~~ 70 (183)
....|+|+|.+|+|||||+..+...
T Consensus 25 ~~~~i~vvG~~~~GKSSLln~l~g~ 49 (299)
T 2aka_B 25 DLPQIAVVGGQSAGKSSVLENFVGR 49 (299)
T ss_dssp CCCEEEEEEBTTSCHHHHHHHHHTS
T ss_pred CCCeEEEEeCCCCCHHHHHHHHHCC
Confidence 4467999999999999999998764
Done!