BLAST Results

Query Summary

Your job contains 1 sequence.

Parameters
Threshold: 0.001
Maximum number of alignments shown: 100
BLAST filter: on

Query Sequence

>035593
TQDDGVPADDVKIIAKFRSRYNYIRVLEVSRKVDHPFAGARLLLLDGPGNIHSISYLFRS
LTNTYFDAFATLPPILPPGPIGILGFGAGSAARLILDLYPEAVIHGWELDPSVIKVAREF
FALEKLEKSYPDRLFVYVGNALKASLKDGFSGILVDLFSKGSLLSELEDPNTWEKLRQCL
RKGGRIMVNVGGSCVEAEDSRRDGKVVMEATLKAMHKVFGKKLYVLSLGNRKDDSLIALT
GELPDLDDWKRALPRSLKFYVDMWVPYSG

High Scoring Gene Products

Symbol, full name Information P value
AT5G63100 protein from Arabidopsis thaliana 4.5e-91
AT5G44600 protein from Arabidopsis thaliana 1.0e-29
AT5G44590 protein from Arabidopsis thaliana 3.2e-28

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Raw Blast Data

BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]

Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.

Reference:  Gish, W. (1996-2006) http://blast.wustl.edu

Query=  035593
        (269 letters)

Database:  go_20130330-seqdb.fasta
           368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done

                                                                     Smallest
                                                                       Sum
                                                              High  Probability
Sequences producing High-scoring Segment Pairs:              Score  P(N)      N

TAIR|locus:2161997 - symbol:AT5G63100 "AT5G63100" species...   908  4.5e-91   1
TAIR|locus:2152140 - symbol:AT5G44600 "AT5G44600" species...   329  1.0e-29   1
TAIR|locus:2152135 - symbol:AT5G44590 "AT5G44590" species...   271  3.2e-28   2


>TAIR|locus:2161997 [details] [associations]
            symbol:AT5G63100 "AT5G63100" species:3702 "Arabidopsis
            thaliana" [GO:0008150 "biological_process" evidence=ND] [GO:0009507
            "chloroplast" evidence=IDA] EMBL:CP002688 GenomeReviews:BA000015_GR
            GO:GO:0009507 GO:GO:0008168 EMBL:AB008265 IPI:IPI00526929
            RefSeq:NP_201115.1 UniGene:At.8833 ProteinModelPortal:Q9FML3
            SMR:Q9FML3 PaxDb:Q9FML3 PRIDE:Q9FML3 EnsemblPlants:AT5G63100.1
            GeneID:836430 KEGG:ath:AT5G63100 TAIR:At5g63100 eggNOG:NOG292119
            HOGENOM:HOG000239579 InParanoid:Q9FML3 OMA:HIRVADV PhylomeDB:Q9FML3
            ProtClustDB:CLSN2687540 Genevestigator:Q9FML3 Uniprot:Q9FML3
        Length = 329

 Score = 908 (324.7 bits), Expect = 4.5e-91, P = 4.5e-91
 Identities = 175/267 (65%), Positives = 211/267 (79%)

Query:     3 DDGVPADDVKIIAKFRSRYNYIRVLEVSRKVDHPFAGARLLLLDGPGNIHSISYLFRSLT 62
             D+G+PA+DVK IAKF+SR+NYIRV+EVSRK +HP AG+RLLLLD PGNIHSIS+L ++LT
Sbjct:    57 DNGIPAEDVKTIAKFKSRHNYIRVIEVSRKTNHPLAGSRLLLLDNPGNIHSISFLLKTLT 116

Query:    63 NTYFDAFATXXXXXXXXXXXXXXFGAGSAARLILDLYP-EAVIHGWELDPSVIKVAREFF 121
             ++YFD FAT              FGAGS ARLIL+LYP E  +HGWELDPSVI V REFF
Sbjct:   117 DSYFDVFATLPPIIPPGPIGILGFGAGSTARLILELYPPEIAVHGWELDPSVIDVGREFF 176

Query:   122 ALEKLEKSYPDRLFVYVGNALKASLKDGFSGILVDLFSKGSLLSELEDPNTWEKLRQCLR 181
              L KLE+ + DR+F+ +G+AL AS+K GFSGILVDLFSKGS++ EL+DP  WE L+  LR
Sbjct:   177 GLSKLERDHKDRIFINIGDALNASVKTGFSGILVDLFSKGSVIKELQDPQVWEDLKSRLR 236

Query:   182 KGGRIMVNVGGSCVEAEDSRRDGKVVMEATLKAMHKVFGKKLYVLSLGNRKDDSLIALTG 241
               GRIMVNVGG CVEAEDS RDG +VME TL+ M +VFG KL+VL+LGN  D S +ALTG
Sbjct:   237 YRGRIMVNVGGKCVEAEDSDRDGALVMEETLRVMSQVFGDKLFVLTLGNGNDSS-VALTG 295

Query:   242 ELPDLDDWKRALPRS-LKFYVDMWVPY 267
             +LPDLD WK+ LPRS L+ YVDMW+PY
Sbjct:   296 DLPDLDAWKKRLPRSELRSYVDMWIPY 322


>TAIR|locus:2152140 [details] [associations]
            symbol:AT5G44600 "AT5G44600" species:3702 "Arabidopsis
            thaliana" [GO:0008150 "biological_process" evidence=ND] [GO:0009507
            "chloroplast" evidence=ISM] EMBL:CP002688 GO:GO:0008168
            IPI:IPI00516848 RefSeq:NP_199273.2 UniGene:At.50503
            ProteinModelPortal:F4KAB4 PRIDE:F4KAB4 EnsemblPlants:AT5G44600.1
            GeneID:834488 KEGG:ath:AT5G44600 OMA:RIMVNCA Uniprot:F4KAB4
        Length = 333

 Score = 329 (120.9 bits), Expect = 1.0e-29, P = 1.0e-29
 Identities = 86/262 (32%), Positives = 138/262 (52%)

Query:    13 IIAKFRSRYNYIRVLEVSRKVDHPFAGARLLLLDGPGNIHS-ISYLFRSLTNTYFDAFAT 71
             ++   RSRYN I +++         A +R LLLD   N+HS I+   ++ T +Y+D FA+
Sbjct:    76 VVTAVRSRYNEIVIVDT--------ASSRYLLLDSTKNVHSVINKGGQNWTGSYWDEFAS 127

Query:    72 XXXXXXXXXXXXXXFGAGSAARLILDLYPEAVIHGWELDPSVIKVAREFFALEKLEK--S 129
                            G G+AARL+L+L+P   + GWE+D  +I+ AR++  L +LEK  S
Sbjct:   128 LPPIIPNGPVAIYGLGGGTAARLMLELWPTMQLEGWEIDEILIEKARDYLGLSELEKPTS 187

Query:   130 YPDRLFVYVGNALKAS--LKDGFSGILVDLFSKGSLLSELEDPNTWEKLRQCLRKGGRIM 187
                RL V+V +AL  S  +   ++GI+VDLF+ G +L +L++   W +L   L   GRIM
Sbjct:   188 KGGRLCVHVDDALSPSQDVSGRYAGIIVDLFADGKVLDQLQEVPIWLELASRLMPNGRIM 247

Query:   188 VNVGGSCVEAEDSRR-----DGKVVMEATLKAMHKVFGKKLYVLSLGNRKDDSLIALTGE 242
             VN  G   E ++ +      D   ++ +T+K + + F  ++      + +  + +ALTG 
Sbjct:   248 VNCAGIETELQNGKPQLLLDDSAGMLNSTVKILSEAFPGQVCWKRTPDSEGLNFLALTGG 307

Query:   243 LPDLDDWKRALPRSLKFYVDMW 264
             LPDL DW   +P      V  W
Sbjct:   308 LPDLSDWSSKVPVRFCEVVKQW 329


>TAIR|locus:2152135 [details] [associations]
            symbol:AT5G44590 "AT5G44590" species:3702 "Arabidopsis
            thaliana" [GO:0003674 "molecular_function" evidence=ND] [GO:0008150
            "biological_process" evidence=ND] [GO:0009507 "chloroplast"
            evidence=ISM] EMBL:CP002688 GenomeReviews:BA000015_GR GO:GO:0008168
            EMBL:AB024024 UniGene:At.55360 IPI:IPI00537149 RefSeq:NP_199272.1
            UniGene:At.74065 ProteinModelPortal:Q9LU07 SMR:Q9LU07 PaxDb:Q9LU07
            PRIDE:Q9LU07 EnsemblPlants:AT5G44590.1 GeneID:834487
            KEGG:ath:AT5G44590 TAIR:At5g44590 eggNOG:NOG245499
            HOGENOM:HOG000006319 InParanoid:Q9LU07 OMA:LELWPST PhylomeDB:Q9LU07
            ProtClustDB:CLSN2687268 Genevestigator:Q9LU07 Uniprot:Q9LU07
        Length = 349

 Score = 271 (100.5 bits), Expect = 3.2e-28, Sum P(2) = 3.2e-28
 Identities = 64/187 (34%), Positives = 104/187 (55%)

Query:    87 GAGSAARLILDLYPEAVIHGWELDPSVIKVAREFFALEKLE--KSYPDRLFVYVGNALKA 144
             G G+AARLIL+L+P   + GWE+D  +I+ AR++  L +LE   S   RL ++V +AL  
Sbjct:   147 GGGTAARLILELWPSTELEGWEIDEILIEKARDYLGLSELEIPTSKGGRLCIHVDDALSP 206

Query:   145 SLKDG--FSGILVDLFSKGSLLSELEDPNTWEKLRQCLRKGGRIMVNVGGSCVEAEDSRR 202
                D   ++GI+VDLF+ G +L +L++   W +L   L   GR+MVN  G   E ++ + 
Sbjct:   207 CQDDSKRYAGIIVDLFADGKVLDQLQEIPMWLELASRLMPNGRLMVNCAGIETEVKNGKP 266

Query:   203 -----DGKVVMEATLKAMHKVFGKKLYVLSLGNRKDDSLIALTGELPDLDDWKRALPRSL 257
                  D   ++ +T+K + + F  ++      + +  + +ALTG LPDL DW   +P  L
Sbjct:   267 ELVLDDLAWMLNSTVKILSEAFPGQVSWKRTPDSEGLNFVALTGGLPDLSDWSSKVPVRL 326

Query:   258 KFYVDMW 264
                V +W
Sbjct:   327 SESVKLW 333

 Score = 59 (25.8 bits), Expect = 3.2e-28, Sum P(2) = 3.2e-28
 Identities = 15/46 (32%), Positives = 26/46 (56%)

Query:     9 DDVKIIAKFRSRYNYIRVLEVSRKVDHPFAGARLLLLDGPGNIHSI 54
             ++  ++   +SRYN I +++        FA +R LLLD   N+HS+
Sbjct:    58 EEFTVVTAVKSRYNEIVIVDT-------FA-SRYLLLDSTRNVHSV 95


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.321   0.140   0.417    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      269       255   0.00085  114 3  11 22  0.44    33
                                                     32  0.48    36


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  3
  No. of states in DFA:  606 (64 KB)
  Total size of DFA:  192 KB (2109 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  20.57u 0.15s 20.72t   Elapsed:  00:00:01
  Total cpu time:  20.57u 0.15s 20.72t   Elapsed:  00:00:01
  Start:  Thu May  9 23:17:20 2013   End:  Thu May  9 23:17:21 2013

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