BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 035593
(269 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2NYV|A Chain A, X-Ray Crystal Structure Of A Phosphoglycolate Phosphatase
From Aquifex Aeolicus
Length = 222
Score = 32.0 bits (71), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 27/80 (33%), Positives = 42/80 (52%), Gaps = 15/80 (18%)
Query: 107 WELDPSVIKVAREF-FALEK------LEKSYPDRLFVYVGNALKA----SLKDGFSGILV 155
++LD ++I A++ ALEK LE+ YPD + Y+G ++A LKD F V
Sbjct: 8 FDLDGTLIDSAKDIALALEKTLKELGLEEYYPDNVTKYIGGGVRALLEKVLKDKFREEYV 67
Query: 156 DLFSKGSLLSELEDPNTWEK 175
++F K LE+P + K
Sbjct: 68 EVFRK----HYLENPVVYTK 83
>pdb|2YY6|A Chain A, Crystal Structure Of The Phosphoglycolate Phosphatase From
Aquifex Aeolicus Vf5
pdb|2YY6|B Chain B, Crystal Structure Of The Phosphoglycolate Phosphatase From
Aquifex Aeolicus Vf5
Length = 213
Score = 31.6 bits (70), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 27/80 (33%), Positives = 42/80 (52%), Gaps = 15/80 (18%)
Query: 107 WELDPSVIKVAREF-FALEK------LEKSYPDRLFVYVGNALKA----SLKDGFSGILV 155
++LD ++I A++ ALEK LE+ YPD + Y+G ++A LKD F V
Sbjct: 6 FDLDGTLIDSAKDIALALEKTLKELGLEEYYPDNVTKYIGGGVRALLEKVLKDKFREEYV 65
Query: 156 DLFSKGSLLSELEDPNTWEK 175
++F K LE+P + K
Sbjct: 66 EVFRK----HYLENPVVYTK 81
>pdb|3GJY|A Chain A, Crystal Structure Of A Probable Spermidine Synthase From
Corynebacterium Glutamicum Atcc 13032
Length = 317
Score = 30.0 bits (66), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 26/110 (23%), Positives = 49/110 (44%), Gaps = 12/110 (10%)
Query: 87 GAGSAARLILDLYPEAVIHGWELDPSVIKVAREFFALEKLEKSYPDRLFVYVGNALKASL 146
GA + AR D+YP++ ELD + +++RE+F + + R+ + V +A +
Sbjct: 99 GACTXARYFADVYPQSRNTVVELDAELARLSREWFDIPRAP-----RVKIRVDDARX--V 151
Query: 147 KDGFSG-----ILVDLFSKGSLLSELEDPNTWEKLRQCLRKGGRIMVNVG 191
+ F+ I+ D+F+ +E + L GG + N G
Sbjct: 152 AESFTPASRDVIIRDVFAGAITPQNFTTVEFFEHCHRGLAPGGLYVANCG 201
>pdb|3KZV|A Chain A, The Crystal Structure Of A Cytoplasmic Protein With
Unknown Function From Saccharomyces Cerevisiae
Length = 254
Score = 28.1 bits (61), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 24/86 (27%), Positives = 38/86 (44%), Gaps = 12/86 (13%)
Query: 103 VIHGWELDPSVIKVAREFFALEKLEKSYPDRLFVYVGNALKASLKDGF-------SGILV 155
V+ + D V VAR L+KL++ Y DR F VG+ + S+ G +
Sbjct: 21 VLFSLDKDTVVYGVARSEAPLKKLKEKYGDRFFYVVGDITEDSVLKQLVNAAVKGHGKID 80
Query: 156 DLFSKGSLLSELE-----DPNTWEKL 176
L + +L ++ D N W+KL
Sbjct: 81 SLVANAGVLEPVQNVNEIDVNAWKKL 106
>pdb|2Y08|A Chain A, Structure Of The Substrate-Free Fad-Dependent Tirandamycin
Oxidase Taml
pdb|2Y08|B Chain B, Structure Of The Substrate-Free Fad-Dependent Tirandamycin
Oxidase Taml
pdb|2Y3R|A Chain A, Structure Of The Tirandamycin-Bound Fad-Dependent
Tirandamycin Oxidase Taml In P21 Space Group
pdb|2Y3R|B Chain B, Structure Of The Tirandamycin-Bound Fad-Dependent
Tirandamycin Oxidase Taml In P21 Space Group
pdb|2Y3R|C Chain C, Structure Of The Tirandamycin-Bound Fad-Dependent
Tirandamycin Oxidase Taml In P21 Space Group
pdb|2Y3R|D Chain D, Structure Of The Tirandamycin-Bound Fad-Dependent
Tirandamycin Oxidase Taml In P21 Space Group
pdb|2Y3S|A Chain A, Structure Of The Tirandamycine-Bound Fad-Dependent
Tirandamycin Oxidase Taml In C2 Space Group
pdb|2Y3S|B Chain B, Structure Of The Tirandamycine-Bound Fad-Dependent
Tirandamycin Oxidase Taml In C2 Space Group
pdb|2Y4G|A Chain A, Structure Of The Tirandamycin-Bound Fad-Dependent
Tirandamycin Oxidase Taml In P212121 Space Group
pdb|2Y4G|B Chain B, Structure Of The Tirandamycin-Bound Fad-Dependent
Tirandamycin Oxidase Taml In P212121 Space Group
Length = 530
Score = 28.1 bits (61), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 13/36 (36%), Positives = 20/36 (55%)
Query: 174 EKLRQCLRKGGRIMVNVGGSCVEAEDSRRDGKVVME 209
+ L + +R G R+ V GG C E + D +VVM+
Sbjct: 73 QVLSRAVRSGKRVAVRSGGHCYEDFVANSDVRVVMD 108
>pdb|2WI8|A Chain A, Crystal Structure Of The Triscatecholate Siderophore
Binding Protein Feua From Bacillus Subtilis
pdb|2WHY|A Chain A, Crystal Structure Of The Triscatecholate Siderophore
Binding Protein Feua From Bacillus Subtilis Complexed
With Ferri-Bacillibactin
pdb|2XUZ|A Chain A, Crystal Structure Of The Triscatecholate Siderophore
Binding Protein Feua From Bacillus Subtilis Complexed
With Ferri-Enterobactin
pdb|2XV1|A Chain A, Crystal Structure Of The Triscatecholate Siderophore
Binding Protein Feua From Bacillus Subtilis Complexed
With Ferric Mecam
Length = 311
Score = 27.7 bits (60), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 19/62 (30%), Positives = 27/62 (43%), Gaps = 9/62 (14%)
Query: 98 LYPEAVIHGWEL-------DPSVIKVAR--EFFALEKLEKSYPDRLFVYVGNALKASLKD 148
+YPE V L P+ +K A+ E +LEKL + PD +FV + A D
Sbjct: 186 IYPEQVYFNSTLYGDLGLKAPNEVKAAKAQELISLEKLSEMNPDHIFVQFSDDENADKPD 245
Query: 149 GF 150
Sbjct: 246 AL 247
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.140 0.417
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,978,174
Number of Sequences: 62578
Number of extensions: 306402
Number of successful extensions: 807
Number of sequences better than 100.0: 15
Number of HSP's better than 100.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 799
Number of HSP's gapped (non-prelim): 15
length of query: 269
length of database: 14,973,337
effective HSP length: 97
effective length of query: 172
effective length of database: 8,903,271
effective search space: 1531362612
effective search space used: 1531362612
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 51 (24.3 bits)