Query 035593
Match_columns 269
No_of_seqs 306 out of 2441
Neff 8.4
Searched_HMMs 46136
Date Fri Mar 29 04:20:42 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/035593.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/035593hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PRK04457 spermidine synthase; 100.0 1.4E-33 3E-38 245.9 22.5 229 13-265 8-250 (262)
2 PLN02823 spermine synthase 100.0 7.9E-31 1.7E-35 234.7 22.2 225 8-253 45-282 (336)
3 PRK00811 spermidine synthase; 100.0 1.2E-30 2.7E-35 229.8 20.7 214 6-241 16-238 (283)
4 PF01564 Spermine_synth: Sperm 100.0 2.5E-30 5.4E-35 223.2 18.1 204 8-234 18-228 (246)
5 PLN02366 spermidine synthase 100.0 2E-29 4.3E-34 223.5 21.2 212 8-241 33-254 (308)
6 PRK01581 speE spermidine synth 100.0 9.3E-29 2E-33 220.6 19.4 213 8-243 94-316 (374)
7 COG0421 SpeE Spermidine syntha 100.0 2E-28 4.4E-33 213.7 20.7 211 7-239 17-235 (282)
8 TIGR00417 speE spermidine synt 100.0 1.3E-27 2.7E-32 209.6 20.0 210 8-240 14-232 (270)
9 PRK00536 speE spermidine synth 99.9 1.7E-26 3.7E-31 199.4 18.7 200 9-244 16-219 (262)
10 PRK03612 spermidine synthase; 99.9 1.7E-24 3.7E-29 205.3 20.0 217 9-244 237-463 (521)
11 COG4262 Predicted spermidine s 99.9 2.9E-23 6.2E-28 181.9 17.2 211 10-243 234-454 (508)
12 PF12847 Methyltransf_18: Meth 99.8 3.7E-18 8.1E-23 129.5 8.8 110 77-190 1-111 (112)
13 KOG2352 Predicted spermine/spe 99.7 3.6E-17 7.8E-22 149.5 8.6 191 40-246 247-461 (482)
14 KOG1562 Spermidine synthase [A 99.7 2E-16 4.3E-21 135.8 7.8 206 11-239 66-281 (337)
15 COG4123 Predicted O-methyltran 99.6 7.1E-15 1.5E-19 125.5 14.1 156 71-243 38-214 (248)
16 PRK00107 gidB 16S rRNA methylt 99.6 9.2E-15 2E-19 121.2 13.9 107 73-192 41-147 (187)
17 PF05175 MTS: Methyltransferas 99.6 5.5E-15 1.2E-19 120.9 11.9 130 77-227 31-161 (170)
18 COG2226 UbiE Methylase involve 99.6 3.3E-14 7.2E-19 121.3 14.5 116 70-194 44-160 (238)
19 TIGR02469 CbiT precorrin-6Y C5 99.6 4.7E-14 1E-18 108.4 12.9 106 74-191 16-123 (124)
20 COG4106 Tam Trans-aconitate me 99.6 2.2E-14 4.9E-19 118.3 10.9 106 74-193 27-132 (257)
21 TIGR00138 gidB 16S rRNA methyl 99.6 4.3E-14 9.3E-19 116.8 12.8 102 77-191 42-143 (181)
22 PF13659 Methyltransf_26: Meth 99.6 2.8E-14 6.1E-19 109.0 9.9 108 79-191 2-116 (117)
23 COG4122 Predicted O-methyltran 99.5 1.9E-13 4E-18 115.1 15.0 106 75-191 57-168 (219)
24 PRK00121 trmB tRNA (guanine-N( 99.5 1.7E-13 3.6E-18 115.2 14.0 110 77-191 40-157 (202)
25 PRK14103 trans-aconitate 2-met 99.5 8.8E-14 1.9E-18 121.0 12.3 102 75-192 27-128 (255)
26 PF01209 Ubie_methyltran: ubiE 99.5 4.1E-14 8.8E-19 121.3 10.1 110 75-193 45-156 (233)
27 PRK15001 SAM-dependent 23S rib 99.5 2.9E-13 6.3E-18 123.3 15.9 131 78-226 229-360 (378)
28 PF13847 Methyltransf_31: Meth 99.5 6E-14 1.3E-18 112.5 10.2 106 77-192 3-112 (152)
29 TIGR00091 tRNA (guanine-N(7)-) 99.5 2.4E-13 5.2E-18 113.6 14.2 110 77-191 16-133 (194)
30 PF08241 Methyltransf_11: Meth 99.5 6E-14 1.3E-18 102.4 9.3 93 82-188 1-95 (95)
31 TIGR03533 L3_gln_methyl protei 99.5 5.3E-13 1.1E-17 117.8 15.8 112 77-192 121-253 (284)
32 PRK01683 trans-aconitate 2-met 99.5 3E-13 6.5E-18 117.7 13.8 104 74-191 28-131 (258)
33 PF01596 Methyltransf_3: O-met 99.5 5E-14 1.1E-18 118.3 8.4 103 76-189 44-154 (205)
34 PRK08287 cobalt-precorrin-6Y C 99.5 4.8E-13 1E-17 111.0 14.3 106 74-192 28-133 (187)
35 PLN02233 ubiquinone biosynthes 99.5 1.1E-12 2.5E-17 114.4 16.6 113 75-193 71-185 (261)
36 COG2813 RsmC 16S RNA G1207 met 99.5 1.5E-12 3.2E-17 113.6 16.5 129 77-227 158-287 (300)
37 TIGR02752 MenG_heptapren 2-hep 99.5 5E-13 1.1E-17 114.3 13.3 115 68-191 36-152 (231)
38 PLN03075 nicotianamine synthas 99.5 4.6E-13 9.9E-18 117.6 12.6 150 77-243 123-277 (296)
39 COG2242 CobL Precorrin-6B meth 99.5 1.7E-12 3.7E-17 105.7 15.0 118 63-193 19-138 (187)
40 PRK13942 protein-L-isoaspartat 99.5 5.2E-13 1.1E-17 113.1 12.3 108 69-191 68-177 (212)
41 PLN02244 tocopherol O-methyltr 99.5 7.3E-13 1.6E-17 119.9 13.8 107 76-191 117-224 (340)
42 PRK13944 protein-L-isoaspartat 99.5 8.2E-13 1.8E-17 111.3 13.0 104 74-191 69-174 (205)
43 TIGR00080 pimt protein-L-isoas 99.5 5.4E-13 1.2E-17 113.2 12.0 109 68-191 68-178 (215)
44 PRK11805 N5-glutamine S-adenos 99.5 2.4E-12 5.2E-17 114.8 16.2 142 78-241 134-297 (307)
45 PRK11207 tellurite resistance 99.5 6E-13 1.3E-17 111.4 11.7 105 75-188 28-132 (197)
46 PLN02781 Probable caffeoyl-CoA 99.5 2.2E-13 4.8E-18 117.0 9.2 103 75-188 66-176 (234)
47 COG2227 UbiG 2-polyprenyl-3-me 99.5 3.5E-13 7.7E-18 113.6 9.9 106 76-194 58-165 (243)
48 PLN02396 hexaprenyldihydroxybe 99.5 4.3E-13 9.3E-18 120.0 10.9 106 77-193 131-238 (322)
49 PRK09489 rsmC 16S ribosomal RN 99.5 3.3E-12 7.2E-17 115.4 16.5 107 77-190 196-303 (342)
50 PF13649 Methyltransf_25: Meth 99.5 1.2E-13 2.6E-18 103.1 6.0 94 81-184 1-101 (101)
51 PTZ00098 phosphoethanolamine N 99.4 1.4E-12 3E-17 114.0 13.1 116 65-191 40-157 (263)
52 COG2230 Cfa Cyclopropane fatty 99.4 8.3E-13 1.8E-17 114.8 11.2 142 43-194 33-180 (283)
53 PRK15451 tRNA cmo(5)U34 methyl 99.4 4.7E-13 1E-17 116.0 9.5 108 76-190 55-164 (247)
54 PF02353 CMAS: Mycolic acid cy 99.4 8.1E-13 1.8E-17 115.8 11.0 114 70-193 55-169 (273)
55 PLN02476 O-methyltransferase 99.4 6E-13 1.3E-17 116.2 9.6 104 75-189 116-227 (278)
56 PRK07402 precorrin-6B methylas 99.4 2.3E-12 4.9E-17 107.7 12.7 106 74-192 37-144 (196)
57 COG2519 GCD14 tRNA(1-methylade 99.4 3.2E-12 6.9E-17 108.6 13.1 121 74-219 91-213 (256)
58 PRK04266 fibrillarin; Provisio 99.4 8.4E-12 1.8E-16 106.5 15.9 138 74-228 69-211 (226)
59 TIGR00537 hemK_rel_arch HemK-r 99.4 1.1E-11 2.4E-16 102.1 15.7 108 76-192 18-142 (179)
60 TIGR00477 tehB tellurite resis 99.4 1.9E-12 4.1E-17 108.2 11.2 106 75-190 28-133 (195)
61 PRK00377 cbiT cobalt-precorrin 99.4 5.5E-12 1.2E-16 105.6 14.0 107 74-191 37-146 (198)
62 PRK11036 putative S-adenosyl-L 99.4 1.6E-12 3.4E-17 113.2 10.4 107 76-193 43-152 (255)
63 TIGR00740 methyltransferase, p 99.4 4.8E-12 1E-16 109.0 13.3 108 76-190 52-161 (239)
64 COG2521 Predicted archaeal met 99.4 1.2E-12 2.7E-17 109.2 9.1 149 61-220 116-271 (287)
65 smart00828 PKS_MT Methyltransf 99.4 3.1E-12 6.7E-17 108.9 11.0 105 79-191 1-105 (224)
66 COG2518 Pcm Protein-L-isoaspar 99.4 4.5E-12 9.7E-17 105.4 11.4 104 71-191 66-170 (209)
67 PF08242 Methyltransf_12: Meth 99.4 1.2E-13 2.6E-18 102.5 1.8 95 82-186 1-99 (99)
68 PRK11188 rrmJ 23S rRNA methylt 99.4 1.5E-11 3.3E-16 103.9 14.5 124 75-227 49-189 (209)
69 TIGR00536 hemK_fam HemK family 99.4 2.9E-11 6.4E-16 106.8 16.8 110 79-192 116-246 (284)
70 PLN02589 caffeoyl-CoA O-methyl 99.4 1.7E-12 3.7E-17 111.9 8.7 102 77-189 79-189 (247)
71 PRK10258 biotin biosynthesis p 99.4 6.6E-12 1.4E-16 108.9 12.4 101 77-193 42-143 (251)
72 PRK14966 unknown domain/N5-glu 99.4 3E-11 6.6E-16 110.6 17.2 110 76-191 250-382 (423)
73 PRK14121 tRNA (guanine-N(7)-)- 99.4 1.2E-11 2.5E-16 112.6 14.2 109 78-191 123-236 (390)
74 TIGR02072 BioC biotin biosynth 99.4 6.2E-12 1.4E-16 107.4 11.7 104 77-193 34-138 (240)
75 PRK09328 N5-glutamine S-adenos 99.4 7.4E-11 1.6E-15 103.4 18.7 112 75-191 106-239 (275)
76 TIGR03704 PrmC_rel_meth putati 99.4 2.4E-11 5.3E-16 105.4 15.3 106 78-191 87-217 (251)
77 TIGR03534 RF_mod_PrmC protein- 99.4 3.7E-11 8E-16 103.8 15.9 110 77-191 87-218 (251)
78 PLN02336 phosphoethanolamine N 99.3 1.7E-11 3.6E-16 115.9 14.5 106 75-192 264-371 (475)
79 PRK08317 hypothetical protein; 99.3 2E-11 4.3E-16 104.2 13.3 112 69-190 11-124 (241)
80 PF08704 GCD14: tRNA methyltra 99.3 2.7E-11 5.9E-16 104.3 13.5 130 71-226 34-170 (247)
81 PRK11873 arsM arsenite S-adeno 99.3 1.4E-11 3.1E-16 108.0 12.1 107 75-190 75-183 (272)
82 TIGR00406 prmA ribosomal prote 99.3 2.4E-11 5.2E-16 107.6 13.0 104 76-192 158-261 (288)
83 PF01135 PCMT: Protein-L-isoas 99.3 4.4E-12 9.5E-17 106.9 7.9 109 68-191 63-173 (209)
84 TIGR00438 rrmJ cell division p 99.3 1.3E-10 2.7E-15 96.6 16.6 127 71-226 26-169 (188)
85 PRK14967 putative methyltransf 99.3 4.1E-11 8.9E-16 102.2 14.0 110 75-191 34-160 (223)
86 PLN02490 MPBQ/MSBQ methyltrans 99.3 1.5E-11 3.2E-16 110.6 11.6 101 77-189 113-214 (340)
87 PRK01544 bifunctional N5-gluta 99.3 4.6E-11 9.9E-16 113.4 15.3 110 78-191 139-270 (506)
88 PF03848 TehB: Tellurite resis 99.3 1.4E-11 3E-16 102.0 10.3 133 75-220 28-160 (192)
89 PRK12335 tellurite resistance 99.3 1.4E-11 3.1E-16 109.0 10.9 104 77-190 120-223 (287)
90 COG2264 PrmA Ribosomal protein 99.3 2.7E-11 5.8E-16 106.3 12.3 106 75-192 160-265 (300)
91 PRK00312 pcm protein-L-isoaspa 99.3 3.8E-11 8.3E-16 101.5 12.8 101 74-191 75-176 (212)
92 TIGR02716 C20_methyl_CrtF C-20 99.3 2.3E-11 5E-16 108.6 11.7 108 75-190 147-254 (306)
93 KOG1540 Ubiquinone biosynthesi 99.3 5.9E-11 1.3E-15 100.5 13.3 107 78-193 101-217 (296)
94 PRK00517 prmA ribosomal protei 99.3 4.5E-11 9.8E-16 103.7 12.8 99 75-192 117-215 (250)
95 PRK06922 hypothetical protein; 99.3 1.7E-11 3.7E-16 117.1 10.9 110 76-191 417-538 (677)
96 PRK00216 ubiE ubiquinone/menaq 99.3 6.9E-11 1.5E-15 101.1 13.6 108 76-191 50-159 (239)
97 TIGR01177 conserved hypothetic 99.3 3.8E-11 8.2E-16 108.3 12.4 121 65-192 170-296 (329)
98 PRK11705 cyclopropane fatty ac 99.3 4.3E-11 9.3E-16 109.9 12.6 106 74-193 164-270 (383)
99 PRK11088 rrmA 23S rRNA methylt 99.3 2.6E-11 5.7E-16 106.5 10.7 96 77-193 85-184 (272)
100 PF06325 PrmA: Ribosomal prote 99.3 1.5E-11 3.3E-16 108.5 9.0 103 75-192 159-261 (295)
101 TIGR01934 MenG_MenH_UbiE ubiqu 99.3 9E-11 1.9E-15 99.3 13.3 105 76-191 38-144 (223)
102 TIGR03840 TMPT_Se_Te thiopurin 99.3 7.7E-11 1.7E-15 99.8 12.1 112 76-191 33-153 (213)
103 PRK13943 protein-L-isoaspartat 99.3 9.5E-11 2.1E-15 104.9 13.0 102 74-190 77-180 (322)
104 TIGR00446 nop2p NOL1/NOP2/sun 99.2 2.2E-10 4.8E-15 100.2 15.0 131 75-220 69-219 (264)
105 PF05401 NodS: Nodulation prot 99.2 3.3E-11 7.2E-16 99.1 9.0 148 77-242 43-197 (201)
106 KOG4300 Predicted methyltransf 99.2 4.7E-11 1E-15 98.2 9.6 106 78-193 77-185 (252)
107 PRK15128 23S rRNA m(5)C1962 me 99.2 1E-10 2.2E-15 107.7 13.0 114 76-193 219-342 (396)
108 PTZ00146 fibrillarin; Provisio 99.2 7.5E-10 1.6E-14 97.1 17.6 148 75-239 130-285 (293)
109 KOG1270 Methyltransferases [Co 99.2 1.5E-11 3.2E-16 104.6 6.6 106 79-193 91-198 (282)
110 COG2890 HemK Methylase of poly 99.2 3.2E-10 6.8E-15 99.9 15.3 106 80-191 113-239 (280)
111 PF02390 Methyltransf_4: Putat 99.2 1.7E-10 3.7E-15 96.3 12.9 122 80-218 20-149 (195)
112 PRK10901 16S rRNA methyltransf 99.2 2.7E-10 5.8E-15 106.2 15.6 114 75-194 242-376 (427)
113 smart00650 rADc Ribosomal RNA 99.2 1.8E-10 4E-15 94.0 12.7 101 75-191 11-114 (169)
114 PRK14968 putative methyltransf 99.2 5E-10 1.1E-14 92.4 15.5 112 76-192 22-150 (188)
115 PHA03411 putative methyltransf 99.2 1.1E-10 2.5E-15 101.2 11.8 105 77-191 64-184 (279)
116 TIGR00452 methyltransferase, p 99.2 1.3E-10 2.7E-15 103.8 12.3 102 76-190 120-225 (314)
117 TIGR03587 Pse_Me-ase pseudamin 99.2 1.4E-10 3.1E-15 97.6 11.8 133 75-221 41-175 (204)
118 PRK14904 16S rRNA methyltransf 99.2 2.3E-10 4.9E-15 107.3 14.1 115 75-194 248-381 (445)
119 PHA03412 putative methyltransf 99.2 1.1E-10 2.5E-15 99.1 10.7 99 77-185 49-158 (241)
120 PRK14902 16S rRNA methyltransf 99.2 5.3E-10 1.1E-14 104.8 16.3 115 75-194 248-383 (444)
121 PRK15068 tRNA mo(5)U34 methylt 99.2 1.8E-10 3.8E-15 103.5 12.4 102 77-190 122-226 (322)
122 TIGR03438 probable methyltrans 99.2 9.3E-11 2E-15 104.5 10.2 110 77-192 63-179 (301)
123 PRK14903 16S rRNA methyltransf 99.2 4.5E-10 9.7E-15 104.8 15.0 115 75-194 235-370 (431)
124 PRK05785 hypothetical protein; 99.2 4.9E-10 1.1E-14 95.8 13.7 89 77-183 51-140 (226)
125 TIGR00563 rsmB ribosomal RNA s 99.2 5.9E-10 1.3E-14 103.9 15.1 116 75-194 236-372 (426)
126 PRK06202 hypothetical protein; 99.2 5.6E-10 1.2E-14 95.7 12.5 103 76-193 59-169 (232)
127 cd02440 AdoMet_MTases S-adenos 99.1 5.3E-10 1.1E-14 81.5 10.6 101 80-189 1-103 (107)
128 PRK13255 thiopurine S-methyltr 99.1 6.6E-10 1.4E-14 94.4 12.2 108 76-187 36-152 (218)
129 PRK11783 rlmL 23S rRNA m(2)G24 99.1 3.9E-10 8.4E-15 111.1 12.1 114 76-193 537-659 (702)
130 PRK14901 16S rRNA methyltransf 99.1 1.3E-09 2.8E-14 101.9 14.9 115 75-194 250-388 (434)
131 PRK10909 rsmD 16S rRNA m(2)G96 99.1 5.8E-10 1.3E-14 93.4 11.2 106 76-192 52-161 (199)
132 smart00138 MeTrc Methyltransfe 99.1 2.4E-10 5.2E-15 99.9 8.7 109 77-190 99-242 (264)
133 COG0220 Predicted S-adenosylme 99.1 1E-09 2.2E-14 93.4 11.2 107 79-190 50-164 (227)
134 PF13489 Methyltransf_23: Meth 99.1 7.7E-10 1.7E-14 88.6 9.9 97 75-193 20-118 (161)
135 PLN02336 phosphoethanolamine N 99.1 9.5E-10 2.1E-14 103.9 11.8 100 77-190 37-142 (475)
136 COG1092 Predicted SAM-dependen 99.1 1.6E-09 3.5E-14 98.9 12.4 113 77-194 217-340 (393)
137 PLN02672 methionine S-methyltr 99.1 2.1E-09 4.6E-14 108.6 14.5 116 78-193 119-281 (1082)
138 TIGR02021 BchM-ChlM magnesium 99.1 9.9E-10 2.1E-14 93.3 10.1 103 75-188 53-156 (219)
139 PRK05134 bifunctional 3-demeth 99.1 2E-09 4.3E-14 92.2 12.1 105 76-192 47-153 (233)
140 TIGR01983 UbiG ubiquinone bios 99.0 2.8E-09 6.1E-14 90.5 10.9 105 77-192 45-151 (224)
141 COG3963 Phospholipid N-methylt 99.0 5.5E-09 1.2E-13 83.3 11.5 116 66-193 37-159 (194)
142 PF05891 Methyltransf_PK: AdoM 99.0 1.7E-09 3.8E-14 90.4 9.1 130 77-220 55-190 (218)
143 PRK03522 rumB 23S rRNA methylu 99.0 3.5E-09 7.7E-14 94.9 11.1 102 77-192 173-276 (315)
144 PF05724 TPMT: Thiopurine S-me 99.0 5E-09 1.1E-13 89.0 11.2 139 75-222 35-182 (218)
145 PF00891 Methyltransf_2: O-met 99.0 2.2E-09 4.7E-14 92.5 9.0 102 74-191 97-200 (241)
146 KOG1271 Methyltransferases [Ge 99.0 5.7E-09 1.2E-13 84.4 10.5 112 78-193 68-184 (227)
147 PRK13168 rumA 23S rRNA m(5)U19 99.0 5.2E-09 1.1E-13 98.1 11.9 102 75-191 295-401 (443)
148 KOG1661 Protein-L-isoaspartate 99.0 2.6E-09 5.6E-14 88.2 8.0 118 64-191 68-194 (237)
149 PF07021 MetW: Methionine bios 99.0 2.8E-09 6E-14 87.5 8.2 98 75-192 11-111 (193)
150 KOG2899 Predicted methyltransf 98.9 6.4E-09 1.4E-13 87.6 10.2 112 77-189 58-208 (288)
151 KOG1663 O-methyltransferase [S 98.9 4.4E-09 9.5E-14 88.1 9.1 104 75-189 71-182 (237)
152 PF05185 PRMT5: PRMT5 arginine 98.9 3E-09 6.4E-14 99.3 8.9 104 78-187 187-294 (448)
153 PRK13256 thiopurine S-methyltr 98.9 1.8E-08 3.9E-13 85.7 12.4 111 77-191 43-164 (226)
154 PF02475 Met_10: Met-10+ like- 98.9 4E-09 8.6E-14 88.2 8.1 101 75-187 99-199 (200)
155 PRK04338 N(2),N(2)-dimethylgua 98.9 6.3E-09 1.4E-13 95.4 10.2 100 78-190 58-158 (382)
156 TIGR00095 RNA methyltransferas 98.9 1.3E-08 2.8E-13 84.7 10.9 106 76-191 48-160 (189)
157 TIGR00479 rumA 23S rRNA (uraci 98.9 1E-08 2.2E-13 95.8 11.4 102 75-190 290-396 (431)
158 TIGR02085 meth_trns_rumB 23S r 98.9 1.1E-08 2.4E-13 93.8 11.2 101 77-191 233-335 (374)
159 PRK07580 Mg-protoporphyrin IX 98.9 1.1E-08 2.3E-13 87.3 10.3 101 76-186 62-162 (230)
160 KOG1541 Predicted protein carb 98.9 1E-08 2.3E-13 85.3 9.7 128 78-228 51-188 (270)
161 PLN02585 magnesium protoporphy 98.9 2E-08 4.3E-13 89.8 12.1 104 77-187 144-247 (315)
162 COG2263 Predicted RNA methylas 98.9 2.4E-08 5.3E-13 81.4 11.5 93 77-180 45-137 (198)
163 KOG2904 Predicted methyltransf 98.8 7.3E-08 1.6E-12 82.7 13.3 113 77-193 148-288 (328)
164 KOG3010 Methyltransferase [Gen 98.8 8.1E-09 1.8E-13 87.0 6.9 104 78-192 34-139 (261)
165 PRK11727 23S rRNA mA1618 methy 98.8 3.2E-08 7E-13 88.4 11.1 78 77-158 114-198 (321)
166 PF10672 Methyltrans_SAM: S-ad 98.8 4.2E-08 9E-13 86.3 10.9 114 77-194 123-242 (286)
167 PRK14896 ksgA 16S ribosomal RN 98.8 9.6E-08 2.1E-12 83.3 13.1 84 65-158 17-100 (258)
168 PRK00274 ksgA 16S ribosomal RN 98.8 2.8E-08 6.2E-13 87.3 9.6 82 66-157 31-113 (272)
169 TIGR00308 TRM1 tRNA(guanine-26 98.8 3.4E-08 7.4E-13 90.2 10.2 99 79-190 46-147 (374)
170 PTZ00338 dimethyladenosine tra 98.8 6.4E-08 1.4E-12 85.8 11.6 100 65-177 24-123 (294)
171 COG4976 Predicted methyltransf 98.8 1.9E-09 4.2E-14 90.1 1.8 99 78-193 126-228 (287)
172 PF03602 Cons_hypoth95: Conser 98.7 1.8E-08 3.8E-13 83.3 6.2 109 76-193 41-156 (183)
173 COG0030 KsgA Dimethyladenosine 98.7 1.6E-07 3.5E-12 81.1 12.3 102 66-182 19-122 (259)
174 PRK11933 yebU rRNA (cytosine-C 98.7 4.8E-07 1E-11 85.0 15.8 115 75-194 111-246 (470)
175 PRK01544 bifunctional N5-gluta 98.7 1.9E-07 4.2E-12 88.8 13.3 108 78-190 348-462 (506)
176 KOG1499 Protein arginine N-met 98.7 3.2E-08 6.9E-13 87.8 7.0 126 51-187 34-164 (346)
177 TIGR00755 ksgA dimethyladenosi 98.7 2E-07 4.3E-12 81.1 11.8 96 66-178 18-116 (253)
178 KOG2915 tRNA(1-methyladenosine 98.7 3.8E-07 8.3E-12 78.2 13.0 146 73-244 101-252 (314)
179 TIGR02143 trmA_only tRNA (urac 98.7 1.3E-07 2.9E-12 86.0 10.8 98 78-191 198-312 (353)
180 PF03291 Pox_MCEL: mRNA cappin 98.7 4.8E-08 1E-12 87.9 7.7 138 77-231 62-220 (331)
181 PRK05031 tRNA (uracil-5-)-meth 98.7 1.6E-07 3.4E-12 85.9 10.7 97 79-191 208-321 (362)
182 TIGR02081 metW methionine bios 98.7 1.2E-07 2.6E-12 79.1 9.1 89 76-182 12-104 (194)
183 PF01269 Fibrillarin: Fibrilla 98.6 5.3E-06 1.1E-10 69.7 18.0 134 74-228 70-213 (229)
184 KOG3191 Predicted N6-DNA-methy 98.6 1.9E-06 4.1E-11 69.9 13.8 131 78-226 44-193 (209)
185 KOG1500 Protein arginine N-met 98.6 3.2E-07 6.9E-12 80.9 10.0 103 77-190 177-282 (517)
186 COG1041 Predicted DNA modifica 98.6 4.5E-07 9.8E-12 80.9 10.7 124 61-191 181-311 (347)
187 PF03059 NAS: Nicotianamine sy 98.5 9E-07 2E-11 77.3 10.7 107 78-191 121-231 (276)
188 PF01170 UPF0020: Putative RNA 98.5 3.8E-07 8.3E-12 75.2 7.6 122 63-188 14-149 (179)
189 PLN02232 ubiquinone biosynthes 98.5 6.6E-07 1.4E-11 72.4 8.7 83 105-193 1-84 (160)
190 PRK00050 16S rRNA m(4)C1402 me 98.5 5E-07 1.1E-11 79.9 8.6 76 75-157 17-98 (296)
191 PF01728 FtsJ: FtsJ-like methy 98.5 8.1E-07 1.7E-11 73.1 9.1 130 71-229 15-165 (181)
192 PF08003 Methyltransf_9: Prote 98.5 1.4E-06 3E-11 76.5 10.5 101 77-191 115-220 (315)
193 PF10294 Methyltransf_16: Puta 98.5 7.6E-07 1.7E-11 73.0 8.3 109 75-191 43-157 (173)
194 PF02527 GidB: rRNA small subu 98.5 1.7E-06 3.8E-11 71.4 10.4 112 64-191 34-149 (184)
195 KOG2361 Predicted methyltransf 98.4 4.7E-07 1E-11 76.5 6.5 109 78-194 72-187 (264)
196 KOG1975 mRNA cap methyltransfe 98.4 6.8E-07 1.5E-11 78.5 7.8 135 77-227 117-263 (389)
197 COG0742 N6-adenine-specific me 98.4 1.8E-06 4E-11 70.9 9.4 109 76-193 42-157 (187)
198 COG0293 FtsJ 23S rRNA methylas 98.4 1.1E-05 2.4E-10 67.3 13.6 125 74-227 42-183 (205)
199 COG2520 Predicted methyltransf 98.4 2.4E-06 5.1E-11 76.8 9.9 106 76-194 187-293 (341)
200 PF09445 Methyltransf_15: RNA 98.4 5.5E-07 1.2E-11 72.7 5.1 72 80-157 2-77 (163)
201 KOG0820 Ribosomal RNA adenine 98.4 4.6E-06 1E-10 71.7 10.7 85 67-159 48-133 (315)
202 KOG1709 Guanidinoacetate methy 98.4 2.3E-06 4.9E-11 71.2 8.5 106 76-192 100-209 (271)
203 COG4076 Predicted RNA methylas 98.4 9.7E-07 2.1E-11 71.9 6.2 100 78-187 33-132 (252)
204 PF13578 Methyltransf_24: Meth 98.3 3E-07 6.5E-12 68.9 2.5 95 82-189 1-104 (106)
205 PF05219 DREV: DREV methyltran 98.3 5.3E-06 1.1E-10 71.3 10.1 93 78-191 95-189 (265)
206 PF02384 N6_Mtase: N-6 DNA Met 98.3 1.4E-06 3.1E-11 77.8 6.9 122 67-191 36-184 (311)
207 PRK01747 mnmC bifunctional tRN 98.3 2.7E-06 5.9E-11 83.7 9.2 112 78-190 58-206 (662)
208 PF06080 DUF938: Protein of un 98.3 3E-06 6.6E-11 70.6 7.8 108 77-190 24-141 (204)
209 PRK04148 hypothetical protein; 98.3 1E-05 2.3E-10 63.1 9.7 65 77-155 16-83 (134)
210 COG2265 TrmA SAM-dependent met 98.2 7.5E-06 1.6E-10 76.3 10.1 102 76-191 292-397 (432)
211 PRK11783 rlmL 23S rRNA m(2)G24 98.2 1E-05 2.2E-10 80.1 11.6 123 64-190 176-347 (702)
212 COG1889 NOP1 Fibrillarin-like 98.2 0.00052 1.1E-08 56.9 19.2 138 74-227 73-214 (231)
213 PF00398 RrnaAD: Ribosomal RNA 98.2 1.2E-05 2.6E-10 70.3 10.4 98 65-178 18-119 (262)
214 KOG4589 Cell division protein 98.2 4.2E-05 9.1E-10 62.4 12.6 124 75-227 67-208 (232)
215 PF05430 Methyltransf_30: S-ad 98.2 6E-06 1.3E-10 63.8 6.9 91 131-240 30-123 (124)
216 TIGR00478 tly hemolysin TlyA f 98.1 2.2E-05 4.7E-10 67.1 10.4 91 76-190 74-171 (228)
217 COG0357 GidB Predicted S-adeno 98.1 2.9E-05 6.2E-10 65.5 10.7 107 71-193 60-171 (215)
218 COG0144 Sun tRNA and rRNA cyto 98.1 3.3E-05 7.2E-10 70.4 11.8 116 75-195 154-293 (355)
219 PRK10611 chemotaxis methyltran 98.1 7.5E-06 1.6E-10 72.3 7.3 110 78-190 116-262 (287)
220 KOG3178 Hydroxyindole-O-methyl 98.1 1.1E-05 2.4E-10 71.9 8.3 94 78-189 178-274 (342)
221 KOG3420 Predicted RNA methylas 98.1 1.1E-05 2.5E-10 63.1 6.8 96 77-181 48-144 (185)
222 TIGR02987 met_A_Alw26 type II 98.0 2.1E-05 4.6E-10 75.4 8.9 77 77-158 31-121 (524)
223 PF01739 CheR: CheR methyltran 98.0 3.8E-05 8.3E-10 64.1 8.3 112 77-190 31-175 (196)
224 PRK11760 putative 23S rRNA C24 97.9 0.00023 5E-09 63.8 13.1 97 75-193 209-308 (357)
225 PF12147 Methyltransf_20: Puta 97.9 0.00014 2.9E-09 63.6 11.2 108 77-190 135-249 (311)
226 COG1352 CheR Methylase of chem 97.9 5.7E-05 1.2E-09 66.0 9.0 111 78-190 97-241 (268)
227 PF05958 tRNA_U5-meth_tr: tRNA 97.9 0.00012 2.7E-09 66.7 10.5 87 79-178 198-301 (352)
228 TIGR01444 fkbM_fam methyltrans 97.8 5E-05 1.1E-09 59.7 6.8 58 80-142 1-58 (143)
229 KOG1596 Fibrillarin and relate 97.8 0.00042 9.1E-09 58.9 11.8 127 74-220 153-289 (317)
230 PF01189 Nol1_Nop2_Fmu: NOL1/N 97.8 0.00013 2.9E-09 64.4 9.3 135 76-226 84-244 (283)
231 PF08123 DOT1: Histone methyla 97.8 9.7E-05 2.1E-09 62.1 8.0 119 64-188 29-156 (205)
232 KOG0822 Protein kinase inhibit 97.7 9.5E-05 2.1E-09 69.0 7.2 109 78-193 368-481 (649)
233 COG0116 Predicted N6-adenine-s 97.7 0.00019 4.1E-09 65.2 8.7 119 68-190 182-344 (381)
234 KOG2940 Predicted methyltransf 97.7 5.7E-05 1.2E-09 63.6 4.9 104 78-193 73-177 (325)
235 TIGR00006 S-adenosyl-methyltra 97.7 0.00026 5.7E-09 62.9 9.2 77 75-157 18-100 (305)
236 PF02005 TRM: N2,N2-dimethylgu 97.7 0.00019 4.1E-09 65.9 8.3 103 78-191 50-155 (377)
237 COG0500 SmtA SAM-dependent met 97.7 0.0011 2.5E-08 50.6 11.7 102 81-193 52-158 (257)
238 PRK10742 putative methyltransf 97.6 0.00026 5.7E-09 60.8 7.6 79 80-160 91-175 (250)
239 PF09243 Rsm22: Mitochondrial 97.6 0.00075 1.6E-08 59.4 10.6 106 77-191 33-140 (274)
240 PF05148 Methyltransf_8: Hypot 97.6 0.0003 6.5E-09 58.8 7.5 86 78-191 73-159 (219)
241 TIGR03439 methyl_EasF probable 97.6 0.00074 1.6E-08 60.6 10.4 109 77-191 76-198 (319)
242 PF04816 DUF633: Family of unk 97.5 0.00062 1.3E-08 57.3 9.0 102 81-192 1-103 (205)
243 PF01795 Methyltransf_5: MraW 97.5 0.00036 7.8E-09 62.0 7.2 77 75-157 18-101 (310)
244 COG1867 TRM1 N2,N2-dimethylgua 97.5 0.00065 1.4E-08 61.2 8.7 103 78-193 53-157 (380)
245 PF07942 N2227: N2227-like pro 97.4 0.00059 1.3E-08 59.6 8.1 107 78-191 57-202 (270)
246 PTZ00357 methyltransferase; Pr 97.4 0.00067 1.5E-08 65.4 8.7 104 80-185 703-830 (1072)
247 COG0275 Predicted S-adenosylme 97.4 0.0016 3.5E-08 57.3 9.7 78 74-157 20-104 (314)
248 COG3897 Predicted methyltransf 97.4 0.00096 2.1E-08 55.1 7.7 108 71-194 73-181 (218)
249 KOG2187 tRNA uracil-5-methyltr 97.3 0.0013 2.8E-08 61.6 9.4 107 71-190 377-490 (534)
250 PF04989 CmcI: Cephalosporin h 97.3 0.0012 2.6E-08 55.2 8.2 101 77-189 32-146 (206)
251 PF01861 DUF43: Protein of unk 97.3 0.0026 5.5E-08 54.4 10.2 103 77-191 44-150 (243)
252 PF07091 FmrO: Ribosomal RNA m 97.3 0.00093 2E-08 57.4 7.6 76 74-155 102-177 (251)
253 KOG1122 tRNA and rRNA cytosine 97.3 0.0035 7.6E-08 57.4 11.3 137 77-229 241-399 (460)
254 KOG2730 Methylase [General fun 97.2 0.00044 9.5E-09 58.0 4.6 74 77-156 94-172 (263)
255 COG2384 Predicted SAM-dependen 97.2 0.0031 6.8E-08 53.0 9.7 104 77-190 16-120 (226)
256 PF04672 Methyltransf_19: S-ad 97.2 0.0045 9.8E-08 53.8 11.0 109 78-193 69-193 (267)
257 KOG1253 tRNA methyltransferase 97.2 0.00038 8.3E-09 64.7 4.2 103 78-192 110-218 (525)
258 COG0287 TyrA Prephenate dehydr 97.2 0.0058 1.3E-07 53.9 11.4 145 79-258 4-160 (279)
259 PF06962 rRNA_methylase: Putat 97.1 0.0086 1.9E-07 47.1 10.4 88 103-194 1-96 (140)
260 KOG3045 Predicted RNA methylas 97.1 0.0014 3.1E-08 56.3 6.5 85 78-192 181-266 (325)
261 PF05971 Methyltransf_10: Prot 97.1 0.0014 3E-08 58.1 6.4 78 78-158 103-186 (299)
262 PF13679 Methyltransf_32: Meth 97.1 0.0013 2.8E-08 51.9 5.6 77 76-154 24-104 (141)
263 PF03141 Methyltransf_29: Puta 97.0 0.0015 3.2E-08 61.2 6.1 114 63-191 99-220 (506)
264 COG1063 Tdh Threonine dehydrog 97.0 0.012 2.6E-07 53.6 11.8 97 78-192 169-271 (350)
265 COG4121 Uncharacterized conser 96.8 0.0026 5.7E-08 54.8 5.9 112 78-190 59-208 (252)
266 KOG2198 tRNA cytosine-5-methyl 96.8 0.031 6.7E-07 50.6 12.3 115 75-194 153-300 (375)
267 KOG0024 Sorbitol dehydrogenase 96.7 0.011 2.5E-07 52.5 9.2 106 75-194 167-277 (354)
268 PRK09424 pntA NAD(P) transhydr 96.7 0.018 4E-07 54.9 11.2 108 76-190 163-285 (509)
269 COG1064 AdhP Zn-dependent alco 96.7 0.015 3.3E-07 52.4 9.9 95 75-192 164-261 (339)
270 KOG2352 Predicted spermine/spe 96.7 0.013 2.9E-07 54.7 9.6 112 73-191 43-162 (482)
271 KOG1099 SAM-dependent methyltr 96.6 0.017 3.7E-07 48.9 9.0 135 78-241 42-205 (294)
272 KOG1331 Predicted methyltransf 96.6 0.0011 2.5E-08 57.6 2.1 101 78-194 46-147 (293)
273 KOG3115 Methyltransferase-like 96.6 0.0061 1.3E-07 50.7 6.0 113 78-190 61-183 (249)
274 COG0286 HsdM Type I restrictio 96.5 0.03 6.5E-07 53.4 11.0 124 66-193 175-329 (489)
275 COG1189 Predicted rRNA methyla 96.5 0.03 6.5E-07 47.8 9.7 102 71-190 73-178 (245)
276 PRK09880 L-idonate 5-dehydroge 96.3 0.031 6.8E-07 50.4 9.5 95 77-190 169-266 (343)
277 KOG1269 SAM-dependent methyltr 96.2 0.0079 1.7E-07 54.9 5.4 108 75-192 108-217 (364)
278 PF06460 NSP13: Coronavirus NS 96.2 0.053 1.1E-06 46.8 9.8 113 78-220 62-186 (299)
279 PF04445 SAM_MT: Putative SAM- 96.2 0.011 2.3E-07 50.6 5.5 80 79-160 77-162 (234)
280 PF11968 DUF3321: Putative met 96.1 0.029 6.3E-07 47.2 7.8 93 78-194 52-153 (219)
281 COG5459 Predicted rRNA methyla 96.1 0.035 7.7E-07 49.9 8.6 110 78-193 114-228 (484)
282 PF11599 AviRa: RRNA methyltra 96.0 0.096 2.1E-06 44.1 10.2 112 77-188 51-212 (246)
283 COG0686 Ald Alanine dehydrogen 95.9 0.051 1.1E-06 48.2 8.7 98 77-188 167-266 (371)
284 KOG3201 Uncharacterized conser 95.9 0.0085 1.8E-07 48.1 3.4 110 75-190 27-140 (201)
285 PHA01634 hypothetical protein 95.9 0.042 9.1E-07 42.4 6.9 86 61-158 10-101 (156)
286 TIGR00518 alaDH alanine dehydr 95.7 0.09 1.9E-06 48.3 9.7 97 77-187 166-264 (370)
287 cd08283 FDH_like_1 Glutathione 95.7 0.11 2.5E-06 47.6 10.5 107 75-190 182-306 (386)
288 TIGR01202 bchC 2-desacetyl-2-h 95.5 0.1 2.2E-06 46.4 9.5 87 77-190 144-231 (308)
289 KOG3987 Uncharacterized conser 95.5 0.0022 4.8E-08 53.4 -1.2 94 77-190 112-207 (288)
290 KOG1098 Putative SAM-dependent 95.3 0.057 1.2E-06 51.9 7.3 124 74-226 41-181 (780)
291 TIGR00561 pntA NAD(P) transhyd 95.3 0.14 3.1E-06 48.8 9.9 42 77-119 163-205 (511)
292 cd00315 Cyt_C5_DNA_methylase C 95.2 0.083 1.8E-06 46.5 7.7 119 80-217 2-133 (275)
293 PRK05708 2-dehydropantoate 2-r 95.2 0.44 9.5E-06 42.5 12.3 99 79-189 3-103 (305)
294 PF01234 NNMT_PNMT_TEMT: NNMT/ 95.2 0.016 3.5E-07 50.3 3.0 113 77-191 56-200 (256)
295 KOG1501 Arginine N-methyltrans 95.2 0.053 1.2E-06 50.1 6.3 77 79-160 68-146 (636)
296 COG4798 Predicted methyltransf 95.2 0.098 2.1E-06 43.4 7.2 109 74-191 45-167 (238)
297 KOG2798 Putative trehalase [Ca 95.0 0.073 1.6E-06 47.2 6.3 107 78-191 151-296 (369)
298 PF00107 ADH_zinc_N: Zinc-bind 94.9 0.23 5E-06 37.8 8.6 84 87-192 1-91 (130)
299 cd08237 ribitol-5-phosphate_DH 94.8 0.31 6.7E-06 44.0 10.4 93 76-190 162-256 (341)
300 PF02254 TrkA_N: TrkA-N domain 94.8 0.19 4E-06 37.7 7.6 91 81-192 1-98 (116)
301 cd08254 hydroxyacyl_CoA_DH 6-h 94.8 0.31 6.7E-06 43.3 10.2 97 75-190 163-263 (338)
302 TIGR03451 mycoS_dep_FDH mycoth 94.7 0.3 6.5E-06 44.3 10.2 97 75-190 174-276 (358)
303 TIGR03366 HpnZ_proposed putati 94.7 0.32 6.9E-06 42.5 9.9 97 77-190 120-218 (280)
304 PRK09260 3-hydroxybutyryl-CoA 94.5 0.12 2.6E-06 45.6 6.9 105 79-193 2-120 (288)
305 PRK06249 2-dehydropantoate 2-r 94.5 0.58 1.3E-05 41.8 11.3 97 78-188 5-104 (313)
306 TIGR03201 dearomat_had 6-hydro 94.4 0.16 3.5E-06 45.9 7.6 97 75-190 164-272 (349)
307 PRK07502 cyclohexadienyl dehyd 94.3 0.67 1.4E-05 41.3 11.3 92 79-191 7-100 (307)
308 cd08230 glucose_DH Glucose deh 94.3 0.41 8.8E-06 43.3 10.1 95 76-190 171-269 (355)
309 PRK10309 galactitol-1-phosphat 94.3 0.36 7.7E-06 43.5 9.5 98 75-190 158-260 (347)
310 PRK11524 putative methyltransf 94.2 0.1 2.2E-06 46.1 5.8 59 132-190 7-80 (284)
311 PF07279 DUF1442: Protein of u 94.1 0.6 1.3E-05 39.4 9.7 104 77-192 41-152 (218)
312 PLN03154 putative allyl alcoho 94.0 0.46 1E-05 43.0 9.8 96 75-189 156-257 (348)
313 PF01262 AlaDh_PNT_C: Alanine 93.9 0.064 1.4E-06 43.5 3.5 106 76-190 18-138 (168)
314 cd08281 liver_ADH_like1 Zinc-d 93.8 0.51 1.1E-05 43.0 9.7 97 75-190 189-290 (371)
315 cd08294 leukotriene_B4_DH_like 93.8 1.1 2.4E-05 39.6 11.6 95 75-189 141-240 (329)
316 cd05188 MDR Medium chain reduc 93.4 0.74 1.6E-05 39.1 9.5 98 75-191 132-233 (271)
317 KOG1227 Putative methyltransfe 93.4 0.032 6.9E-07 49.1 0.9 99 78-189 195-296 (351)
318 PF02636 Methyltransf_28: Puta 93.4 0.081 1.8E-06 45.8 3.5 45 78-122 19-71 (252)
319 PLN02256 arogenate dehydrogena 93.2 1.9 4.1E-05 38.5 12.1 105 78-221 36-143 (304)
320 PF10354 DUF2431: Domain of un 93.2 0.54 1.2E-05 38.1 7.8 107 82-193 1-128 (166)
321 TIGR02825 B4_12hDH leukotriene 93.2 1.6 3.4E-05 38.8 11.6 95 75-189 136-236 (325)
322 PRK03562 glutathione-regulated 93.1 0.7 1.5E-05 45.5 9.9 69 78-159 400-474 (621)
323 cd08239 THR_DH_like L-threonin 93.0 0.69 1.5E-05 41.3 9.1 97 75-190 161-262 (339)
324 PLN02740 Alcohol dehydrogenase 92.9 0.97 2.1E-05 41.4 10.1 96 75-189 196-299 (381)
325 COG0604 Qor NADPH:quinone redu 92.9 0.95 2.1E-05 40.8 9.8 97 75-191 140-242 (326)
326 PF05711 TylF: Macrocin-O-meth 92.9 0.43 9.2E-06 41.3 7.1 108 77-193 74-215 (248)
327 PRK07417 arogenate dehydrogena 92.8 0.48 1E-05 41.6 7.5 89 80-192 2-92 (279)
328 PF02153 PDH: Prephenate dehyd 92.8 1.7 3.6E-05 37.8 10.8 100 91-226 1-100 (258)
329 cd08293 PTGR2 Prostaglandin re 92.7 1.1 2.4E-05 40.0 10.0 92 79-189 156-253 (345)
330 KOG0821 Predicted ribosomal RN 92.6 0.22 4.8E-06 42.2 4.8 61 77-144 50-110 (326)
331 PRK13699 putative methylase; P 92.6 0.28 6.1E-06 41.9 5.6 57 134-190 2-72 (227)
332 PRK06545 prephenate dehydrogen 92.5 1.8 3.8E-05 39.6 11.1 94 79-193 1-97 (359)
333 PRK05808 3-hydroxybutyryl-CoA 92.4 0.2 4.4E-06 44.0 4.7 104 79-193 4-121 (282)
334 PRK06522 2-dehydropantoate 2-r 92.3 1.5 3.2E-05 38.6 10.2 95 80-188 2-98 (304)
335 COG1748 LYS9 Saccharopine dehy 92.3 0.93 2E-05 41.8 8.9 106 79-193 2-125 (389)
336 cd08295 double_bond_reductase_ 92.1 1.5 3.3E-05 39.1 10.2 97 74-189 148-250 (338)
337 cd08285 NADP_ADH NADP(H)-depen 92.1 1.2 2.7E-05 39.9 9.6 96 75-189 164-265 (351)
338 cd00401 AdoHcyase S-adenosyl-L 92.1 1.7 3.6E-05 40.6 10.4 96 66-188 189-287 (413)
339 cd08232 idonate-5-DH L-idonate 92.1 1.7 3.6E-05 38.8 10.3 94 77-189 165-261 (339)
340 PRK10669 putative cation:proto 92.0 1.3 2.8E-05 42.9 10.2 92 78-190 417-515 (558)
341 PRK03659 glutathione-regulated 92.0 1.1 2.4E-05 43.9 9.7 94 78-192 400-500 (601)
342 COG0569 TrkA K+ transport syst 92.0 0.74 1.6E-05 39.2 7.5 68 79-158 1-75 (225)
343 PF02558 ApbA: Ketopantoate re 92.0 0.86 1.9E-05 35.7 7.4 97 81-190 1-101 (151)
344 PF04378 RsmJ: Ribosomal RNA s 91.8 1.7 3.7E-05 37.5 9.4 123 82-226 62-190 (245)
345 PLN02586 probable cinnamyl alc 91.8 1.9 4.1E-05 39.2 10.4 93 76-189 182-277 (360)
346 COG3129 Predicted SAM-dependen 91.7 0.46 1E-05 40.5 5.7 82 77-161 78-165 (292)
347 COG2961 ComJ Protein involved 91.5 7.2 0.00016 33.8 12.7 123 82-226 93-221 (279)
348 TIGR02822 adh_fam_2 zinc-bindi 91.5 2.6 5.7E-05 37.7 10.9 91 75-190 163-254 (329)
349 PRK09496 trkA potassium transp 91.5 1.8 3.9E-05 40.5 10.3 69 77-157 230-305 (453)
350 PRK06035 3-hydroxyacyl-CoA deh 91.4 1.2 2.6E-05 39.3 8.5 102 79-191 4-122 (291)
351 COG0677 WecC UDP-N-acetyl-D-ma 91.2 2 4.4E-05 39.6 9.6 111 78-193 9-131 (436)
352 PLN02514 cinnamyl-alcohol dehy 91.1 3.4 7.4E-05 37.4 11.3 94 76-189 179-274 (357)
353 PRK11064 wecC UDP-N-acetyl-D-m 91.0 2.3 5E-05 39.7 10.3 105 79-190 4-119 (415)
354 cd05278 FDH_like Formaldehyde 90.9 2 4.3E-05 38.3 9.5 96 76-189 166-266 (347)
355 PRK07066 3-hydroxybutyryl-CoA 90.9 0.93 2E-05 40.8 7.2 105 78-192 7-121 (321)
356 PF01408 GFO_IDH_MocA: Oxidore 90.9 4.8 0.0001 29.9 10.3 87 80-188 2-91 (120)
357 PRK06130 3-hydroxybutyryl-CoA 90.8 1.3 2.8E-05 39.4 8.2 105 78-192 4-117 (311)
358 PRK08655 prephenate dehydrogen 90.8 8.5 0.00018 36.2 13.9 88 80-192 2-93 (437)
359 PLN02827 Alcohol dehydrogenase 90.6 1.6 3.4E-05 40.0 8.8 96 75-189 191-294 (378)
360 PRK12921 2-dehydropantoate 2-r 90.6 2.2 4.8E-05 37.6 9.4 95 80-188 2-100 (305)
361 PLN02545 3-hydroxybutyryl-CoA 90.6 0.95 2.1E-05 40.0 7.0 105 78-193 4-122 (295)
362 TIGR02356 adenyl_thiF thiazole 90.6 1.5 3.3E-05 36.6 7.9 33 77-110 20-54 (202)
363 KOG2671 Putative RNA methylase 90.5 0.4 8.6E-06 43.2 4.4 113 74-191 205-355 (421)
364 PF03807 F420_oxidored: NADP o 90.4 1 2.2E-05 32.4 5.9 87 80-187 1-91 (96)
365 cd05285 sorbitol_DH Sorbitol d 90.4 2.2 4.8E-05 38.2 9.4 98 74-190 159-265 (343)
366 PRK09496 trkA potassium transp 90.4 3.2 7E-05 38.8 10.8 89 80-188 2-97 (453)
367 PRK08507 prephenate dehydrogen 90.4 0.97 2.1E-05 39.5 6.8 89 80-192 2-92 (275)
368 PF01555 N6_N4_Mtase: DNA meth 90.3 0.52 1.1E-05 39.3 5.0 41 77-119 191-231 (231)
369 PRK07530 3-hydroxybutyryl-CoA 90.2 1.2 2.6E-05 39.3 7.3 105 78-193 4-122 (292)
370 TIGR00872 gnd_rel 6-phosphoglu 90.2 2.9 6.4E-05 37.0 9.9 91 80-193 2-95 (298)
371 PF03446 NAD_binding_2: NAD bi 90.2 2.4 5.2E-05 33.9 8.5 91 79-193 2-96 (163)
372 PLN02712 arogenate dehydrogena 90.2 3 6.5E-05 41.5 10.7 91 78-193 52-145 (667)
373 PRK11524 putative methyltransf 90.1 0.59 1.3E-05 41.2 5.3 44 77-122 208-251 (284)
374 cd08261 Zn_ADH7 Alcohol dehydr 90.0 2.4 5.1E-05 37.8 9.2 96 75-189 157-257 (337)
375 PRK12491 pyrroline-5-carboxyla 89.8 4.7 0.0001 35.3 10.7 91 79-191 3-97 (272)
376 PF03141 Methyltransf_29: Puta 89.8 2.7 5.9E-05 39.8 9.5 95 78-190 366-467 (506)
377 PF03721 UDPG_MGDP_dh_N: UDP-g 89.8 0.54 1.2E-05 38.8 4.5 108 80-192 2-122 (185)
378 PRK07819 3-hydroxybutyryl-CoA 89.6 0.81 1.7E-05 40.5 5.7 104 79-193 6-124 (286)
379 PRK08818 prephenate dehydrogen 89.5 0.8 1.7E-05 42.1 5.8 81 78-193 4-90 (370)
380 COG4301 Uncharacterized conser 89.4 9.2 0.0002 33.2 11.5 136 77-221 78-230 (321)
381 TIGR02818 adh_III_F_hyde S-(hy 89.4 3.7 8E-05 37.4 10.1 97 75-190 183-287 (368)
382 COG4017 Uncharacterized protei 89.4 1.4 3E-05 36.6 6.3 64 77-159 44-108 (254)
383 PRK09422 ethanol-active dehydr 89.3 5 0.00011 35.6 10.8 97 75-189 160-260 (338)
384 PRK08293 3-hydroxybutyryl-CoA 89.3 2.1 4.5E-05 37.7 8.1 104 79-192 4-122 (287)
385 cd08300 alcohol_DH_class_III c 89.3 4.2 9E-05 36.9 10.3 97 75-190 184-288 (368)
386 cd08238 sorbose_phosphate_red 89.2 3.8 8.2E-05 38.0 10.2 102 76-189 174-287 (410)
387 PF12692 Methyltransf_17: S-ad 89.1 0.64 1.4E-05 36.8 4.1 98 78-188 29-132 (160)
388 KOG4058 Uncharacterized conser 89.1 1.4 3.1E-05 35.0 6.0 63 77-144 72-134 (199)
389 cd05213 NAD_bind_Glutamyl_tRNA 89.1 4.4 9.5E-05 36.2 10.1 96 77-193 177-275 (311)
390 cd08255 2-desacetyl-2-hydroxye 88.9 4.8 0.0001 34.6 10.1 94 74-189 94-189 (277)
391 PRK05562 precorrin-2 dehydroge 88.8 2.8 6.1E-05 35.7 8.2 103 64-191 9-117 (223)
392 cd08286 FDH_like_ADH2 formalde 88.8 6 0.00013 35.3 10.9 97 75-189 164-265 (345)
393 cd08265 Zn_ADH3 Alcohol dehydr 88.7 2.6 5.7E-05 38.5 8.7 98 74-189 200-306 (384)
394 PF01210 NAD_Gly3P_dh_N: NAD-d 88.7 1.5 3.2E-05 35.0 6.2 102 80-192 1-104 (157)
395 PF00145 DNA_methylase: C-5 cy 88.7 8.6 0.00019 33.9 11.8 118 80-217 2-132 (335)
396 PLN02353 probable UDP-glucose 88.3 2 4.4E-05 40.8 7.7 107 80-191 3-128 (473)
397 PRK08229 2-dehydropantoate 2-r 88.3 4.1 9E-05 36.6 9.5 97 79-187 3-104 (341)
398 cd08245 CAD Cinnamyl alcohol d 88.3 7.8 0.00017 34.2 11.2 93 75-189 160-255 (330)
399 PTZ00142 6-phosphogluconate de 88.1 5.5 0.00012 37.9 10.5 98 80-193 3-103 (470)
400 cd08231 MDR_TM0436_like Hypoth 88.1 3.9 8.5E-05 36.8 9.3 95 76-189 176-279 (361)
401 COG1565 Uncharacterized conser 88.1 1 2.3E-05 40.9 5.4 44 78-121 78-129 (370)
402 cd08242 MDR_like Medium chain 88.1 6.3 0.00014 34.7 10.5 88 75-188 153-243 (319)
403 cd05279 Zn_ADH1 Liver alcohol 88.1 5.8 0.00013 36.0 10.5 96 75-189 181-284 (365)
404 TIGR00675 dcm DNA-methyltransf 88.0 1.4 3E-05 39.5 6.2 64 81-157 1-67 (315)
405 TIGR02819 fdhA_non_GSH formald 87.9 7.5 0.00016 35.9 11.2 104 75-190 183-299 (393)
406 TIGR00873 gnd 6-phosphoglucona 87.8 8.7 0.00019 36.5 11.6 96 81-193 2-100 (467)
407 cd08301 alcohol_DH_plants Plan 87.7 5.4 0.00012 36.1 10.0 97 75-190 185-289 (369)
408 cd08233 butanediol_DH_like (2R 87.5 4.5 9.8E-05 36.3 9.3 97 75-190 170-272 (351)
409 PRK12490 6-phosphogluconate de 87.5 5.7 0.00012 35.2 9.8 92 80-193 2-96 (299)
410 PRK13699 putative methylase; P 87.4 1.3 2.8E-05 37.8 5.3 44 77-122 163-206 (227)
411 cd08234 threonine_DH_like L-th 87.4 8.3 0.00018 34.1 10.8 95 74-190 156-257 (334)
412 PRK06125 short chain dehydroge 87.3 6.4 0.00014 33.5 9.8 76 77-158 6-90 (259)
413 COG1893 ApbA Ketopantoate redu 87.1 5.4 0.00012 35.6 9.4 91 80-192 2-103 (307)
414 cd08277 liver_alcohol_DH_like 87.1 7.2 0.00016 35.3 10.4 97 75-190 182-286 (365)
415 COG1568 Predicted methyltransf 87.0 1.7 3.6E-05 38.3 5.7 102 78-190 153-260 (354)
416 KOG1209 1-Acyl dihydroxyaceton 86.9 3.8 8.3E-05 34.8 7.6 82 77-160 6-92 (289)
417 PRK07523 gluconate 5-dehydroge 86.9 6.6 0.00014 33.3 9.6 75 77-158 9-96 (255)
418 cd08278 benzyl_alcohol_DH Benz 86.9 13 0.00027 33.7 11.9 94 75-190 184-285 (365)
419 KOG2078 tRNA modification enzy 86.7 0.66 1.4E-05 43.0 3.3 66 74-144 246-311 (495)
420 PRK07326 short chain dehydroge 86.7 9.9 0.00021 31.7 10.5 72 78-157 6-90 (237)
421 COG5379 BtaA S-adenosylmethion 86.6 1.1 2.4E-05 39.6 4.5 44 76-121 62-105 (414)
422 PRK06949 short chain dehydroge 86.5 7.2 0.00016 33.0 9.7 75 77-158 8-95 (258)
423 PRK07576 short chain dehydroge 86.4 7.1 0.00015 33.5 9.6 74 77-157 8-94 (264)
424 PRK12475 thiamine/molybdopteri 86.1 4.3 9.3E-05 36.9 8.2 34 77-111 23-58 (338)
425 TIGR00936 ahcY adenosylhomocys 86.0 24 0.00052 32.9 13.2 90 75-192 192-283 (406)
426 cd05284 arabinose_DH_like D-ar 86.0 7 0.00015 34.7 9.6 100 75-189 165-265 (340)
427 PRK08268 3-hydroxy-acyl-CoA de 85.9 1.3 2.8E-05 42.6 5.0 106 77-193 6-125 (507)
428 PRK08644 thiamine biosynthesis 85.9 4.1 8.9E-05 34.3 7.6 33 77-110 27-61 (212)
429 PF03435 Saccharop_dh: Sacchar 85.8 3.3 7.1E-05 38.0 7.5 104 81-193 1-124 (386)
430 PF05050 Methyltransf_21: Meth 85.8 1.6 3.4E-05 34.4 4.8 42 83-124 1-48 (167)
431 TIGR02279 PaaC-3OHAcCoADH 3-hy 85.6 3 6.4E-05 40.0 7.3 107 76-193 3-123 (503)
432 PRK07688 thiamine/molybdopteri 85.5 4.6 0.0001 36.6 8.2 34 77-111 23-58 (339)
433 cd08297 CAD3 Cinnamyl alcohol 85.5 13 0.00027 33.1 11.1 97 75-190 163-265 (341)
434 PRK06124 gluconate 5-dehydroge 85.5 8.2 0.00018 32.7 9.5 75 77-158 10-97 (256)
435 PF02719 Polysacc_synt_2: Poly 85.3 3 6.5E-05 37.0 6.6 72 81-157 1-85 (293)
436 cd08236 sugar_DH NAD(P)-depend 85.2 6.9 0.00015 34.8 9.2 99 75-189 157-257 (343)
437 PF14314 Methyltrans_Mon: Viru 85.1 4.2 9.2E-05 40.1 8.1 153 77-242 322-501 (675)
438 PF10237 N6-adenineMlase: Prob 85.1 11 0.00023 30.5 9.2 89 77-190 25-123 (162)
439 PRK00094 gpsA NAD(P)H-dependen 85.0 3.5 7.7E-05 36.6 7.2 96 80-187 3-102 (325)
440 cd05288 PGDH Prostaglandin deh 84.7 20 0.00044 31.4 11.9 96 75-189 143-243 (329)
441 KOG2793 Putative N2,N2-dimethy 84.6 7.8 0.00017 33.6 8.7 103 77-187 86-196 (248)
442 PRK08267 short chain dehydroge 84.4 13 0.00028 31.6 10.3 71 79-158 2-86 (260)
443 PLN02178 cinnamyl-alcohol dehy 84.4 9 0.0002 35.1 9.7 93 76-189 177-272 (375)
444 cd01483 E1_enzyme_family Super 84.4 10 0.00023 29.3 8.9 30 80-110 1-32 (143)
445 cd05281 TDH Threonine dehydrog 84.3 7 0.00015 34.9 8.8 95 76-189 162-261 (341)
446 TIGR01470 cysG_Nterm siroheme 84.2 9 0.0002 32.1 8.8 90 77-192 8-101 (205)
447 PRK08213 gluconate 5-dehydroge 84.2 11 0.00024 32.0 9.7 75 77-158 11-98 (259)
448 COG1062 AdhC Zn-dependent alco 84.1 12 0.00027 33.9 9.9 100 75-192 183-287 (366)
449 PRK05476 S-adenosyl-L-homocyst 84.0 9.2 0.0002 35.9 9.6 91 75-193 209-301 (425)
450 PRK07454 short chain dehydroge 83.6 11 0.00025 31.5 9.4 73 78-157 6-91 (241)
451 KOG0023 Alcohol dehydrogenase, 83.5 4.7 0.0001 36.3 7.0 100 75-191 179-280 (360)
452 PRK09291 short chain dehydroge 83.5 13 0.00028 31.4 9.9 73 79-158 3-82 (257)
453 KOG2651 rRNA adenine N-6-methy 83.3 2.1 4.4E-05 39.3 4.7 43 76-119 152-194 (476)
454 cd08263 Zn_ADH10 Alcohol dehyd 83.3 24 0.00051 31.9 12.0 97 75-190 185-287 (367)
455 PLN02819 lysine-ketoglutarate 83.3 18 0.0004 37.8 12.1 104 78-192 569-704 (1042)
456 PLN02427 UDP-apiose/xylose syn 83.3 4.2 9.2E-05 37.2 7.1 75 78-158 14-95 (386)
457 PRK06079 enoyl-(acyl carrier p 83.3 17 0.00037 30.9 10.5 72 77-157 6-91 (252)
458 PLN02712 arogenate dehydrogena 83.2 13 0.00028 37.0 10.8 92 77-193 368-462 (667)
459 PF11899 DUF3419: Protein of u 83.2 2.5 5.5E-05 39.0 5.5 43 74-118 32-74 (380)
460 cd08240 6_hydroxyhexanoate_dh_ 83.1 23 0.0005 31.6 11.7 92 75-188 173-272 (350)
461 PRK08762 molybdopterin biosynt 82.9 6 0.00013 36.4 7.9 34 77-110 134-168 (376)
462 PF01488 Shikimate_DH: Shikima 82.9 9.4 0.0002 29.5 7.9 96 77-191 11-109 (135)
463 cd08296 CAD_like Cinnamyl alco 82.6 9.9 0.00021 33.8 9.1 97 75-190 161-259 (333)
464 TIGR00497 hsdM type I restrict 82.5 9.9 0.00021 36.4 9.4 111 77-190 217-355 (501)
465 PRK05597 molybdopterin biosynt 82.4 6.8 0.00015 35.8 8.0 34 77-111 27-62 (355)
466 PF07757 AdoMet_MTase: Predict 82.2 1.4 3E-05 33.1 2.7 31 77-109 58-88 (112)
467 PRK06194 hypothetical protein; 82.2 15 0.00033 31.7 9.9 74 78-158 6-92 (287)
468 PRK12744 short chain dehydroge 82.2 18 0.00038 30.8 10.2 105 78-189 8-144 (257)
469 PRK09599 6-phosphogluconate de 82.1 17 0.00036 32.2 10.2 92 80-193 2-96 (301)
470 PRK07102 short chain dehydroge 82.1 13 0.00029 31.1 9.4 73 79-157 2-84 (243)
471 PRK07814 short chain dehydroge 81.9 15 0.00031 31.5 9.6 74 77-157 9-95 (263)
472 PRK08306 dipicolinate synthase 81.9 10 0.00023 33.6 8.8 90 77-192 151-242 (296)
473 PRK08251 short chain dehydroge 81.5 19 0.00041 30.2 10.1 74 79-157 3-89 (248)
474 TIGR01963 PHB_DH 3-hydroxybuty 81.4 18 0.00038 30.4 9.9 73 79-158 2-87 (255)
475 PRK10083 putative oxidoreducta 81.3 13 0.00029 32.9 9.4 97 75-189 158-258 (339)
476 PRK06940 short chain dehydroge 81.2 16 0.00034 31.7 9.6 72 80-158 3-85 (275)
477 PRK14806 bifunctional cyclohex 81.2 7 0.00015 39.2 8.3 94 79-193 4-99 (735)
478 PF02737 3HCDH_N: 3-hydroxyacy 81.1 3.1 6.7E-05 34.1 4.8 102 80-193 1-117 (180)
479 PRK08324 short chain dehydroge 80.9 16 0.00034 36.4 10.6 73 78-158 422-507 (681)
480 PLN02688 pyrroline-5-carboxyla 80.9 11 0.00023 32.6 8.5 86 80-187 2-92 (266)
481 PRK06482 short chain dehydroge 80.9 24 0.00052 30.2 10.7 69 79-157 3-84 (276)
482 cd01065 NAD_bind_Shikimate_DH 80.7 24 0.00053 27.3 10.5 73 77-160 18-92 (155)
483 PRK07677 short chain dehydroge 80.6 18 0.00039 30.5 9.7 73 79-158 2-87 (252)
484 PF02826 2-Hacid_dh_C: D-isome 80.6 9.8 0.00021 30.9 7.6 94 77-193 35-129 (178)
485 cd08291 ETR_like_1 2-enoyl thi 80.5 22 0.00047 31.4 10.5 91 77-190 142-242 (324)
486 cd01487 E1_ThiF_like E1_ThiF_l 80.5 11 0.00024 30.6 7.8 31 80-111 1-33 (174)
487 PLN02662 cinnamyl-alcohol dehy 80.3 4.8 0.0001 35.5 6.1 76 78-158 4-85 (322)
488 PRK08594 enoyl-(acyl carrier p 80.2 26 0.00057 29.9 10.6 73 77-157 6-95 (257)
489 cd08279 Zn_ADH_class_III Class 80.2 13 0.00027 33.6 9.0 93 75-189 180-281 (363)
490 PLN02989 cinnamyl-alcohol dehy 80.2 5.1 0.00011 35.5 6.3 76 78-158 5-86 (325)
491 PRK07531 bifunctional 3-hydrox 80.0 12 0.00026 35.8 9.1 104 79-192 5-118 (495)
492 PRK09072 short chain dehydroge 79.9 25 0.00055 29.9 10.4 74 77-158 4-89 (263)
493 PRK08339 short chain dehydroge 79.9 24 0.00051 30.3 10.2 76 77-158 7-94 (263)
494 PRK10637 cysG siroheme synthas 79.9 10 0.00022 36.0 8.4 90 77-192 11-104 (457)
495 PRK08265 short chain dehydroge 79.8 34 0.00073 29.2 11.2 71 78-158 6-89 (261)
496 cd01492 Aos1_SUMO Ubiquitin ac 79.8 14 0.00031 30.6 8.4 34 77-111 20-55 (197)
497 PRK00045 hemA glutamyl-tRNA re 79.7 20 0.00042 33.6 10.2 100 77-193 181-282 (423)
498 PF00106 adh_short: short chai 79.7 12 0.00026 29.3 7.7 74 79-159 1-90 (167)
499 TIGR00692 tdh L-threonine 3-de 79.6 18 0.00038 32.2 9.7 95 76-189 160-260 (340)
500 PRK05867 short chain dehydroge 79.4 17 0.00038 30.7 9.2 75 77-158 8-95 (253)
No 1
>PRK04457 spermidine synthase; Provisional
Probab=100.00 E-value=1.4e-33 Score=245.88 Aligned_cols=229 Identities=20% Similarity=0.246 Sum_probs=186.5
Q ss_pred EEEEEecCCCeEEEEEeecCCCCcccceEEEEecCCCceeeeeecCCc--ccchHHHHHhcCCC-CCCCCcEEEEcCccc
Q 035593 13 IIAKFRSRYNYIRVLEVSRKVDHPFAGARLLLLDGPGNIHSISYLFRS--LTNTYFDAFATLPP-ILPPGPIGILGFGAG 89 (269)
Q Consensus 13 ~i~~~~s~y~~i~V~e~~~~~~~~~~~~r~L~~~~~~~~qs~~~~~~~--l~~~y~~~~~~~~~-l~~~~~VL~iG~G~G 89 (269)
.+.-.++.|+.|.|+|... .|+|++++. .+||.+.++++ +.+.|++.|+.... ..++++||+||||+|
T Consensus 8 ~~~~~~~~~~~i~v~e~~~--------~R~L~f~~~-~~qs~~~~~~P~~l~~~y~~~m~~~l~~~~~~~~vL~IG~G~G 78 (262)
T PRK04457 8 RLRPAKAGFPEVGVSEEGG--------VRSLHLGSD-TVQSSMRIDDPSELELAYTRAMMGFLLFNPRPQHILQIGLGGG 78 (262)
T ss_pred hhccccccCCCcEEEecCC--------EEEEEECCC-cceeeeecCCcccccCHHHHHHHHHHhcCCCCCEEEEECCCHh
Confidence 3444577899999999863 799999875 69999999875 56789999964333 335789999999999
Q ss_pred HHHHHHHHHCCCceEEEEECChHHHHHHHHhcCccccccCCCCcEEEEEcccccc--ccCCCeeEEEEcCCCCCCCCCCC
Q 035593 90 SAARLILDLYPEAVIHGWELDPSVIKVAREFFALEKLEKSYPDRLFVYVGNALKA--SLKDGFSGILVDLFSKGSLLSEL 167 (269)
Q Consensus 90 ~~~~~l~~~~p~~~v~~vEidp~~~~~a~~~~~~~~~~~~~~~rv~~~~~D~~~~--~~~~~yD~I~~d~~~~~~~~~~l 167 (269)
.++.++++++|+.+|++||+||++++.|+++|+.+. .+++++++++|++++ ...++||+|++|+++....+.++
T Consensus 79 ~l~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~~----~~~rv~v~~~Da~~~l~~~~~~yD~I~~D~~~~~~~~~~l 154 (262)
T PRK04457 79 SLAKFIYTYLPDTRQTAVEINPQVIAVARNHFELPE----NGERFEVIEADGAEYIAVHRHSTDVILVDGFDGEGIIDAL 154 (262)
T ss_pred HHHHHHHHhCCCCeEEEEECCHHHHHHHHHHcCCCC----CCCceEEEECCHHHHHHhCCCCCCEEEEeCCCCCCCcccc
Confidence 999999998999999999999999999999998653 257999999999988 44568999999998776666788
Q ss_pred CcHHHHHHHHhhccCCcEEEEEecCCCccccccccchhHHHHHHHHHHHHHhcCceEEEEcCCCCceEEEEecC-CC-C-
Q 035593 168 EDPNTWEKLRQCLRKGGRIMVNVGGSCVEAEDSRRDGKVVMEATLKAMHKVFGKKLYVLSLGNRKDDSLIALTG-EL-P- 244 (269)
Q Consensus 168 ~~~e~~~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~F~~~v~~~~~~~~~n~v~~~~~~-~~-~- 244 (269)
.+.+|++.++++|+|||++++|.++.. ......+++++++|++.+++++.+.++|.+++|++. +. .
T Consensus 155 ~t~efl~~~~~~L~pgGvlvin~~~~~-----------~~~~~~l~~l~~~F~~~~~~~~~~~~~N~v~~a~~~~~~~~~ 223 (262)
T PRK04457 155 CTQPFFDDCRNALSSDGIFVVNLWSRD-----------KRYDRYLERLESSFEGRVLELPAESHGNVAVFAFKSAPKELR 223 (262)
T ss_pred CcHHHHHHHHHhcCCCcEEEEEcCCCc-----------hhHHHHHHHHHHhcCCcEEEEecCCCccEEEEEECCCCCCcC
Confidence 899999999999999999999998652 246788999999998678888888889999999874 42 2
Q ss_pred ------CHHHHHHhcCcchhhccccee
Q 035593 245 ------DLDDWKRALPRSLKFYVDMWV 265 (269)
Q Consensus 245 ------~~~~~~~~l~~~~~~~~~~~~ 265 (269)
....+.+.++.++..++.++.
T Consensus 224 ~~~l~~~a~~l~~~~~~~~~~~~~~~~ 250 (262)
T PRK04457 224 WDKLRKRAKKLENEHGLDFHRFVAKLK 250 (262)
T ss_pred HHHHHHHHHHHHHHhCCCHHHHHHHHh
Confidence 223345556677776666654
No 2
>PLN02823 spermine synthase
Probab=99.98 E-value=7.9e-31 Score=234.70 Aligned_cols=225 Identities=17% Similarity=0.263 Sum_probs=172.7
Q ss_pred CCCccEEEEEecCCCeEEEEEeecCCCCcccceEEEEecCCCceeeeeecCCcccchHHHHHhcCCCCC--CCCcEEEEc
Q 035593 8 ADDVKIIAKFRSRYNYIRVLEVSRKVDHPFAGARLLLLDGPGNIHSISYLFRSLTNTYFDAFATLPPIL--PPGPIGILG 85 (269)
Q Consensus 8 ~~~~~~i~~~~s~y~~i~V~e~~~~~~~~~~~~r~L~~~~~~~~qs~~~~~~~l~~~y~~~~~~~~~l~--~~~~VL~iG 85 (269)
....++|++++|+||+|.|+++.. + +++|++|+ .+||.. ..++.|++.|++.+.+. .+++||+||
T Consensus 45 ~~~~~vl~~~~S~yQ~I~V~~~~~-----~--g~~L~lDg--~~qs~~----~de~~YhE~l~h~~l~~~~~pk~VLiiG 111 (336)
T PLN02823 45 YAVNSVLHTGTSEFQDIALVDTKP-----F--GKVLIIDG--KMQSAE----ADEFVYHESLVHPALLHHPNPKTVFIMG 111 (336)
T ss_pred EEeccEEEeccCCCeEEEEEECCC-----C--ceEEEECC--cccccc----chHHHHHHHHHhHHHhhCCCCCEEEEEC
Confidence 445689999999999999999975 2 68999998 688764 24567999887665433 478999999
Q ss_pred CcccHHHHHHHHHCCCceEEEEECChHHHHHHHHhcCccccccCCCCcEEEEEcccccc--ccCCCeeEEEEcCCCCCC-
Q 035593 86 FGAGSAARLILDLYPEAVIHGWELDPSVIKVAREFFALEKLEKSYPDRLFVYVGNALKA--SLKDGFSGILVDLFSKGS- 162 (269)
Q Consensus 86 ~G~G~~~~~l~~~~p~~~v~~vEidp~~~~~a~~~~~~~~~~~~~~~rv~~~~~D~~~~--~~~~~yD~I~~d~~~~~~- 162 (269)
+|+|.++++++++.+..+|++|||||+++++|+++|..+. ....++|++++.+|++.+ ...++||+|++|++++..
T Consensus 112 gG~G~~~re~l~~~~~~~v~~VEiD~~vv~lar~~~~~~~-~~~~dprv~v~~~Da~~~L~~~~~~yDvIi~D~~dp~~~ 190 (336)
T PLN02823 112 GGEGSTAREVLRHKTVEKVVMCDIDQEVVDFCRKHLTVNR-EAFCDKRLELIINDARAELEKRDEKFDVIIGDLADPVEG 190 (336)
T ss_pred CCchHHHHHHHhCCCCCeEEEEECCHHHHHHHHHhccccc-ccccCCceEEEEChhHHHHhhCCCCccEEEecCCCcccc
Confidence 9999999999986556799999999999999999987532 123479999999999998 456789999999877532
Q ss_pred -CCCCCCcHHHHH-HHHhhccCCcEEEEEecCCCccccccccchhHHHHHHHHHHHHHhcCceEEEE--cCCC--CceEE
Q 035593 163 -LLSELEDPNTWE-KLRQCLRKGGRIMVNVGGSCVEAEDSRRDGKVVMEATLKAMHKVFGKKLYVLS--LGNR--KDDSL 236 (269)
Q Consensus 163 -~~~~l~~~e~~~-~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~F~~~v~~~~--~~~~--~n~v~ 236 (269)
.+.+|++.+||+ .++++|+|||++++|..+.... .....+..++++++++|+ ++..+. ++.. ....+
T Consensus 191 ~~~~~Lyt~eF~~~~~~~~L~p~Gvlv~q~~s~~~~------~~~~~~~~i~~tl~~vF~-~v~~y~~~vPsf~~~w~f~ 263 (336)
T PLN02823 191 GPCYQLYTKSFYERIVKPKLNPGGIFVTQAGPAGIL------THKEVFSSIYNTLRQVFK-YVVPYTAHVPSFADTWGWV 263 (336)
T ss_pred CcchhhccHHHHHHHHHHhcCCCcEEEEeccCcchh------ccHHHHHHHHHHHHHhCC-CEEEEEeecCCCCCceEEE
Confidence 245799999999 9999999999999997653210 113457889999999997 555543 3322 22356
Q ss_pred EEecCCCC--CHHHHHHhc
Q 035593 237 IALTGELP--DLDDWKRAL 253 (269)
Q Consensus 237 ~~~~~~~~--~~~~~~~~l 253 (269)
+|++.+.. +.+.+.+++
T Consensus 264 ~aS~~~~~~~~~~~~~~~~ 282 (336)
T PLN02823 264 MASDHPFADLSAEELDSRI 282 (336)
T ss_pred EEeCCccccCChhHHHHhh
Confidence 78877643 445455544
No 3
>PRK00811 spermidine synthase; Provisional
Probab=99.97 E-value=1.2e-30 Score=229.81 Aligned_cols=214 Identities=19% Similarity=0.251 Sum_probs=167.4
Q ss_pred CCCCCccEEEEEecCCCeEEEEEeecCCCCcccceEEEEecCCCceeeeeecCCcccchHHHHHhcCCCCC--CCCcEEE
Q 035593 6 VPADDVKIIAKFRSRYNYIRVLEVSRKVDHPFAGARLLLLDGPGNIHSISYLFRSLTNTYFDAFATLPPIL--PPGPIGI 83 (269)
Q Consensus 6 ~~~~~~~~i~~~~s~y~~i~V~e~~~~~~~~~~~~r~L~~~~~~~~qs~~~~~~~l~~~y~~~~~~~~~l~--~~~~VL~ 83 (269)
......++|++.+|+||+|.|++++. + +|+|++|+ .+|+.. ..++.|++.|++.|.+. ++++||+
T Consensus 16 ~~~~~~~~l~~~~s~yq~i~v~~~~~-----~--g~~l~lDg--~~q~~~----~de~~Y~e~l~h~~~~~~~~p~~VL~ 82 (283)
T PRK00811 16 QSFRVKKVLYEEKSPFQRIEIFETPE-----F--GRLLALDG--CVMTTE----RDEFIYHEMMTHVPLFAHPNPKRVLI 82 (283)
T ss_pred eEEeeccEEEEcCCCCeeEEEEEcCC-----c--cEEEEECC--eeeecC----cchhhHHHHhhhHHHhhCCCCCEEEE
Confidence 34456789999999999999999975 2 69999999 688864 35678999887665543 5889999
Q ss_pred EcCcccHHHHHHHHHCCCceEEEEECChHHHHHHHHhcCccccccCCCCcEEEEEcccccc--ccCCCeeEEEEcCCCCC
Q 035593 84 LGFGAGSAARLILDLYPEAVIHGWELDPSVIKVAREFFALEKLEKSYPDRLFVYVGNALKA--SLKDGFSGILVDLFSKG 161 (269)
Q Consensus 84 iG~G~G~~~~~l~~~~p~~~v~~vEidp~~~~~a~~~~~~~~~~~~~~~rv~~~~~D~~~~--~~~~~yD~I~~d~~~~~ 161 (269)
||||+|.++++++++.+..+|++||+|++++++|+++|.....+...++|++++.+|++.+ ...++||+|++|++++.
T Consensus 83 iG~G~G~~~~~~l~~~~~~~V~~VEid~~vv~~a~~~~~~~~~~~~~d~rv~v~~~Da~~~l~~~~~~yDvIi~D~~dp~ 162 (283)
T PRK00811 83 IGGGDGGTLREVLKHPSVEKITLVEIDERVVEVCRKYLPEIAGGAYDDPRVELVIGDGIKFVAETENSFDVIIVDSTDPV 162 (283)
T ss_pred EecCchHHHHHHHcCCCCCEEEEEeCCHHHHHHHHHHhHHhccccccCCceEEEECchHHHHhhCCCcccEEEECCCCCC
Confidence 9999999999999854456999999999999999999842111112378999999999998 44678999999998775
Q ss_pred CCCCCCCcHHHHHHHHhhccCCcEEEEEecCCCccccccccchhHHHHHHHHHHHHHhcCceEEE--EcCCC--Cce-EE
Q 035593 162 SLLSELEDPNTWEKLRQCLRKGGRIMVNVGGSCVEAEDSRRDGKVVMEATLKAMHKVFGKKLYVL--SLGNR--KDD-SL 236 (269)
Q Consensus 162 ~~~~~l~~~e~~~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~F~~~v~~~--~~~~~--~n~-v~ 236 (269)
..+.++++.+||+.++++|+|||+++++..++.. + ...+.++.++++++|+ ++..+ .++.. +.+ .+
T Consensus 163 ~~~~~l~t~ef~~~~~~~L~~gGvlv~~~~~~~~-------~-~~~~~~i~~tl~~~F~-~v~~~~~~vp~~~~~~w~f~ 233 (283)
T PRK00811 163 GPAEGLFTKEFYENCKRALKEDGIFVAQSGSPFY-------Q-ADEIKDMHRKLKEVFP-IVRPYQAAIPTYPSGLWSFT 233 (283)
T ss_pred CchhhhhHHHHHHHHHHhcCCCcEEEEeCCCccc-------C-HHHHHHHHHHHHHHCC-CEEEEEeECCcccCchheeE
Confidence 4455788999999999999999999998766532 2 3468899999999997 45444 33332 332 36
Q ss_pred EEecC
Q 035593 237 IALTG 241 (269)
Q Consensus 237 ~~~~~ 241 (269)
+|++.
T Consensus 234 ~as~~ 238 (283)
T PRK00811 234 FASKN 238 (283)
T ss_pred EeecC
Confidence 67763
No 4
>PF01564 Spermine_synth: Spermine/spermidine synthase; InterPro: IPR001045 Synonym(s): Spermidine aminopropyltransferase A group of polyamine biosynthetic enzymes involved in the fifth (last) step in the biosynthesis of spermidine from arginine and methionine which includes; spermidine synthase (2.5.1.16 from EC), spermine synthase (2.5.1.22 from EC) and putrescine N-methyltransferase (2.1.1.53 from EC) []. The Thermotoga maritima spermidine synthase monomer consists of two domains: an N-terminal domain composed of six beta-strands, and a Rossmann-like C- terminal domain []. The larger C-terminal catalytic core domain consists of a seven-stranded beta-sheet flanked by nine alpha helices. This domain resembles a topology observed in a number of nucleotide and dinucleotide-binding enzymes, and in S-adenosyl-L-methionine (AdoMet)- dependent methyltransferase (MTases) [].; GO: 0003824 catalytic activity; PDB: 2E5W_C 2ZSU_E 2O0L_B 2O05_B 2O06_B 2O07_B 3RW9_B 2PWP_A 2HTE_B 3RIE_B ....
Probab=99.97 E-value=2.5e-30 Score=223.25 Aligned_cols=204 Identities=23% Similarity=0.377 Sum_probs=162.5
Q ss_pred CCCccEEEEEecCCCeEEEEEeecCCCCcccceEEEEecCCCceeeeeecCCcccchHHHHHhcCCCCC--CCCcEEEEc
Q 035593 8 ADDVKIIAKFRSRYNYIRVLEVSRKVDHPFAGARLLLLDGPGNIHSISYLFRSLTNTYFDAFATLPPIL--PPGPIGILG 85 (269)
Q Consensus 8 ~~~~~~i~~~~s~y~~i~V~e~~~~~~~~~~~~r~L~~~~~~~~qs~~~~~~~l~~~y~~~~~~~~~l~--~~~~VL~iG 85 (269)
.+-.+++++.+|+||+|.|++++. | +++|.+|+ .+|+.. ..+..|++.|++.|.+. ++++||.||
T Consensus 18 ~~v~~vl~~~~s~yQ~i~i~~~~~-----~--G~~l~ldg--~~q~~e----~de~~y~e~l~h~~~~~~~~p~~VLiiG 84 (246)
T PF01564_consen 18 YRVEEVLYEEKSPYQHIEIFESSP-----F--GRILVLDG--DVQLSE----RDEFIYHEMLVHPPLLLHPNPKRVLIIG 84 (246)
T ss_dssp EEEEEEEEEEEESSSEEEEEEETT-----T--EEEEEETT--EEEEET----TTHHHHHHHHHHHHHHHSSST-EEEEEE
T ss_pred EEEEEEEEccCCCCCcEEEEEecC-----c--CcEEEECC--eEEEEE----echHHHHHHHhhhHhhcCCCcCceEEEc
Confidence 444678999999999999999964 4 79999999 688764 35678999987665432 599999999
Q ss_pred CcccHHHHHHHHHCCCceEEEEECChHHHHHHHHhcCccccccCCCCcEEEEEcccccc--ccCC-CeeEEEEcCCCCCC
Q 035593 86 FGAGSAARLILDLYPEAVIHGWELDPSVIKVAREFFALEKLEKSYPDRLFVYVGNALKA--SLKD-GFSGILVDLFSKGS 162 (269)
Q Consensus 86 ~G~G~~~~~l~~~~p~~~v~~vEidp~~~~~a~~~~~~~~~~~~~~~rv~~~~~D~~~~--~~~~-~yD~I~~d~~~~~~ 162 (269)
+|+|..+++++++.+..+|++|||||+++++|+++|+.... ...++|++++.+||+.+ ...+ +||+|++|++++..
T Consensus 85 gG~G~~~~ell~~~~~~~i~~VEiD~~Vv~~a~~~f~~~~~-~~~d~r~~i~~~Dg~~~l~~~~~~~yDvIi~D~~dp~~ 163 (246)
T PF01564_consen 85 GGDGGTARELLKHPPVESITVVEIDPEVVELARKYFPEFSE-GLDDPRVRIIIGDGRKFLKETQEEKYDVIIVDLTDPDG 163 (246)
T ss_dssp STTSHHHHHHTTSTT-SEEEEEES-HHHHHHHHHHTHHHHT-TGGSTTEEEEESTHHHHHHTSSST-EEEEEEESSSTTS
T ss_pred CCChhhhhhhhhcCCcceEEEEecChHHHHHHHHhchhhcc-ccCCCceEEEEhhhHHHHHhccCCcccEEEEeCCCCCC
Confidence 99999999999865567999999999999999999864221 12479999999999998 4455 89999999999766
Q ss_pred CCCCCCcHHHHHHHHhhccCCcEEEEEecCCCccccccccchhHHHHHHHHHHHHHhcCce--EEEEcCCCCce
Q 035593 163 LLSELEDPNTWEKLRQCLRKGGRIMVNVGGSCVEAEDSRRDGKVVMEATLKAMHKVFGKKL--YVLSLGNRKDD 234 (269)
Q Consensus 163 ~~~~l~~~e~~~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~F~~~v--~~~~~~~~~n~ 234 (269)
....+++.+||+.++++|+|+|++++|..++.. ....+..+.++++++|+ .+ +...++...+.
T Consensus 164 ~~~~l~t~ef~~~~~~~L~~~Gv~v~~~~~~~~--------~~~~~~~i~~tl~~~F~-~v~~~~~~vP~~~~~ 228 (246)
T PF01564_consen 164 PAPNLFTREFYQLCKRRLKPDGVLVLQAGSPFL--------HPELFKSILKTLRSVFP-QVKPYTAYVPSYGSG 228 (246)
T ss_dssp CGGGGSSHHHHHHHHHHEEEEEEEEEEEEETTT--------THHHHHHHHHHHHTTSS-EEEEEEEECTTSCSS
T ss_pred CcccccCHHHHHHHHhhcCCCcEEEEEccCccc--------chHHHHHHHHHHHHhCC-ceEEEEEEcCeeccc
Confidence 666799999999999999999999999865542 14568889999999998 44 44466665554
No 5
>PLN02366 spermidine synthase
Probab=99.97 E-value=2e-29 Score=223.52 Aligned_cols=212 Identities=19% Similarity=0.251 Sum_probs=166.2
Q ss_pred CCCccEEEEEecCCCeEEEEEeecCCCCcccceEEEEecCCCceeeeeecCCcccchHHHHHhcCCCC--CCCCcEEEEc
Q 035593 8 ADDVKIIAKFRSRYNYIRVLEVSRKVDHPFAGARLLLLDGPGNIHSISYLFRSLTNTYFDAFATLPPI--LPPGPIGILG 85 (269)
Q Consensus 8 ~~~~~~i~~~~s~y~~i~V~e~~~~~~~~~~~~r~L~~~~~~~~qs~~~~~~~l~~~y~~~~~~~~~l--~~~~~VL~iG 85 (269)
.+-.++|++.+|+||+|.|++++. + +|+|++|+ .+|+.. ..++.|++.|++.|.+ .++++||+||
T Consensus 33 ~~v~~~l~~~~s~yQ~i~v~~~~~-----~--g~~L~lDg--~~q~~~----~de~~Y~e~l~h~~l~~~~~pkrVLiIG 99 (308)
T PLN02366 33 LKVEKVLFQGKSDFQDVLVFESAT-----Y--GKVLVLDG--VIQLTE----RDECAYQEMITHLPLCSIPNPKKVLVVG 99 (308)
T ss_pred EEEeeEEEeccCCCeeEEEEEcCC-----C--ceEEEECC--EeeecC----ccHHHHHHHHHHHHHhhCCCCCeEEEEc
Confidence 445589999999999999999975 2 69999999 678754 3468899988766543 4589999999
Q ss_pred CcccHHHHHHHHHCCCceEEEEECChHHHHHHHHhcCccccccCCCCcEEEEEcccccc-c--cCCCeeEEEEcCCCCCC
Q 035593 86 FGAGSAARLILDLYPEAVIHGWELDPSVIKVAREFFALEKLEKSYPDRLFVYVGNALKA-S--LKDGFSGILVDLFSKGS 162 (269)
Q Consensus 86 ~G~G~~~~~l~~~~p~~~v~~vEidp~~~~~a~~~~~~~~~~~~~~~rv~~~~~D~~~~-~--~~~~yD~I~~d~~~~~~ 162 (269)
||+|.++++++++.+..+|++||||++|++.|+++|..... ..+++|++++++|++.+ . ..++||+|++|++++..
T Consensus 100 gG~G~~~rellk~~~v~~V~~VEiD~~Vi~~ar~~f~~~~~-~~~dpRv~vi~~Da~~~l~~~~~~~yDvIi~D~~dp~~ 178 (308)
T PLN02366 100 GGDGGVLREIARHSSVEQIDICEIDKMVIDVSKKFFPDLAV-GFDDPRVNLHIGDGVEFLKNAPEGTYDAIIVDSSDPVG 178 (308)
T ss_pred CCccHHHHHHHhCCCCCeEEEEECCHHHHHHHHHhhhhhcc-ccCCCceEEEEChHHHHHhhccCCCCCEEEEcCCCCCC
Confidence 99999999999853346999999999999999999853111 13478999999999988 2 25689999999988765
Q ss_pred CCCCCCcHHHHHHHHhhccCCcEEEEEecCCCccccccccchhHHHHHHHHHHHHHhcCceEE--EEcCCC--Cce-EEE
Q 035593 163 LLSELEDPNTWEKLRQCLRKGGRIMVNVGGSCVEAEDSRRDGKVVMEATLKAMHKVFGKKLYV--LSLGNR--KDD-SLI 237 (269)
Q Consensus 163 ~~~~l~~~e~~~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~F~~~v~~--~~~~~~--~n~-v~~ 237 (269)
...++++.+||+.++++|+|||+++++..++.. . ...+..+.++++++|+..+.. ..++.. +.+ .++
T Consensus 179 ~~~~L~t~ef~~~~~~~L~pgGvlv~q~~s~~~-------~-~~~~~~i~~tl~~~F~~~v~~~~~~vPsy~~g~w~f~~ 250 (308)
T PLN02366 179 PAQELFEKPFFESVARALRPGGVVCTQAESMWL-------H-MDLIEDLIAICRETFKGSVNYAWTTVPTYPSGVIGFVL 250 (308)
T ss_pred chhhhhHHHHHHHHHHhcCCCcEEEECcCCccc-------c-hHHHHHHHHHHHHHCCCceeEEEecCCCcCCCceEEEE
Confidence 556789999999999999999999998766542 1 446889999999999534433 234433 333 566
Q ss_pred EecC
Q 035593 238 ALTG 241 (269)
Q Consensus 238 ~~~~ 241 (269)
|+++
T Consensus 251 as~~ 254 (308)
T PLN02366 251 CSKE 254 (308)
T ss_pred EECC
Confidence 7765
No 6
>PRK01581 speE spermidine synthase; Validated
Probab=99.96 E-value=9.3e-29 Score=220.57 Aligned_cols=213 Identities=22% Similarity=0.217 Sum_probs=162.6
Q ss_pred CCCccEEEEEecCCCeEEEEEeecCCCCcccceEEEEecCCCceeeeeecCCcccchHHHHHhcCCC--CCCCCcEEEEc
Q 035593 8 ADDVKIIAKFRSRYNYIRVLEVSRKVDHPFAGARLLLLDGPGNIHSISYLFRSLTNTYFDAFATLPP--ILPPGPIGILG 85 (269)
Q Consensus 8 ~~~~~~i~~~~s~y~~i~V~e~~~~~~~~~~~~r~L~~~~~~~~qs~~~~~~~l~~~y~~~~~~~~~--l~~~~~VL~iG 85 (269)
.+..++|++++|+||+|.|+|+.. ..|++|+ .+|+.. .-++.||+.|++.+. ...+++||+||
T Consensus 94 ~~~~~vl~~~~S~yQ~I~I~et~~---------~~L~LDG--~~Q~se----~DE~iYHE~Lvhp~m~~h~~PkrVLIIG 158 (374)
T PRK01581 94 AGEHTNLFAEKSNYQNINLLQVSD---------IRLYLDK--QLQFSS----VDEQIYHEALVHPIMSKVIDPKRVLILG 158 (374)
T ss_pred hcccCEEEecCCCCceEEEEEcCC---------EEEEECC--eecccc----ccHHHHHHHHHHHHHHhCCCCCEEEEEC
Confidence 345689999999999999999963 3599999 688765 346779999876443 34589999999
Q ss_pred CcccHHHHHHHHHCCCceEEEEECChHHHHHHHHhcCccccc--cCCCCcEEEEEcccccc--ccCCCeeEEEEcCCCCC
Q 035593 86 FGAGSAARLILDLYPEAVIHGWELDPSVIKVAREFFALEKLE--KSYPDRLFVYVGNALKA--SLKDGFSGILVDLFSKG 161 (269)
Q Consensus 86 ~G~G~~~~~l~~~~p~~~v~~vEidp~~~~~a~~~~~~~~~~--~~~~~rv~~~~~D~~~~--~~~~~yD~I~~d~~~~~ 161 (269)
||+|..++.++++.+..+|++|||||+|+++|++++.++.+. ...++|++++++|++++ ...++||+|++|++++.
T Consensus 159 gGdG~tlrelLk~~~v~~It~VEIDpeVIelAr~~~~L~~~~~~~~~DpRV~vvi~Da~~fL~~~~~~YDVIIvDl~DP~ 238 (374)
T PRK01581 159 GGDGLALREVLKYETVLHVDLVDLDGSMINMARNVPELVSLNKSAFFDNRVNVHVCDAKEFLSSPSSLYDVIIIDFPDPA 238 (374)
T ss_pred CCHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhccccchhccccCCCCceEEEECcHHHHHHhcCCCccEEEEcCCCcc
Confidence 999999999998645679999999999999999865544322 23579999999999998 45678999999987764
Q ss_pred C-CCCCCCcHHHHHHHHhhccCCcEEEEEecCCCccccccccchhHHHHHHHHHHHHHhcCc-eEEEEcCCCCc-e-EEE
Q 035593 162 S-LLSELEDPNTWEKLRQCLRKGGRIMVNVGGSCVEAEDSRRDGKVVMEATLKAMHKVFGKK-LYVLSLGNRKD-D-SLI 237 (269)
Q Consensus 162 ~-~~~~l~~~e~~~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~F~~~-v~~~~~~~~~n-~-v~~ 237 (269)
. ....+++.+||+.++++|+|||+++++..++.. ....+..+.++++++|... .+...++..+. + ..+
T Consensus 239 ~~~~~~LyT~EFy~~~~~~LkPgGV~V~Qs~sp~~--------~~~~~~~i~~tL~~af~~v~~y~t~vPsyg~~WgF~~ 310 (374)
T PRK01581 239 TELLSTLYTSELFARIATFLTEDGAFVCQSNSPAD--------APLVYWSIGNTIEHAGLTVKSYHTIVPSFGTDWGFHI 310 (374)
T ss_pred ccchhhhhHHHHHHHHHHhcCCCcEEEEecCChhh--------hHHHHHHHHHHHHHhCCceEEEEEecCCCCCceEEEE
Confidence 3 245788999999999999999999998765532 1334567889999999732 22223343333 2 466
Q ss_pred EecCCC
Q 035593 238 ALTGEL 243 (269)
Q Consensus 238 ~~~~~~ 243 (269)
|++.+.
T Consensus 311 as~~~~ 316 (374)
T PRK01581 311 AANSAY 316 (374)
T ss_pred EeCCcc
Confidence 666554
No 7
>COG0421 SpeE Spermidine synthase [Amino acid transport and metabolism]
Probab=99.96 E-value=2e-28 Score=213.70 Aligned_cols=211 Identities=21% Similarity=0.336 Sum_probs=166.5
Q ss_pred CCCCccEEEEEecCCCeEEEEEeecCCCCcccceEEEEecCCCceeeeeecCCcccchHHHHHhcCCCCC--CCCcEEEE
Q 035593 7 PADDVKIIAKFRSRYNYIRVLEVSRKVDHPFAGARLLLLDGPGNIHSISYLFRSLTNTYFDAFATLPPIL--PPGPIGIL 84 (269)
Q Consensus 7 ~~~~~~~i~~~~s~y~~i~V~e~~~~~~~~~~~~r~L~~~~~~~~qs~~~~~~~l~~~y~~~~~~~~~l~--~~~~VL~i 84 (269)
...-.+++++++|.||.|.++++.. | +++|.+|+ .+|+.. ..++.|++.+++.|.+. .+++||+|
T Consensus 17 ~~~v~~~l~~~ks~~q~i~i~~~~~-----~--g~~l~ldg--~~q~~e----~de~~yhEml~h~~~~ah~~pk~VLii 83 (282)
T COG0421 17 MFRVERVLYEEKSEYQDIEIFESED-----F--GKVLVLDG--VVQLTE----RDEFIYHEMLAHVPLLAHPNPKRVLII 83 (282)
T ss_pred eeEeeeeeeeccCCceEEEEEeccc-----c--ceEEEecC--hhhhcc----chhHHHHHHHHhchhhhCCCCCeEEEE
Confidence 3345678999999999999999764 4 78999999 678754 45678888877766543 36799999
Q ss_pred cCcccHHHHHHHHHCCCceEEEEECChHHHHHHHHhcCccccccCCCCcEEEEEcccccc--ccCCCeeEEEEcCCCCCC
Q 035593 85 GFGAGSAARLILDLYPEAVIHGWELDPSVIKVAREFFALEKLEKSYPDRLFVYVGNALKA--SLKDGFSGILVDLFSKGS 162 (269)
Q Consensus 85 G~G~G~~~~~l~~~~p~~~v~~vEidp~~~~~a~~~~~~~~~~~~~~~rv~~~~~D~~~~--~~~~~yD~I~~d~~~~~~ 162 (269)
|+|.|+.+++++++.+-.++++|||||+++++||++|+...... +++|++++.+|+.++ ...++||+|++|.+++.+
T Consensus 84 GgGdG~tlRevlkh~~ve~i~~VEID~~Vi~~ar~~l~~~~~~~-~dpRv~i~i~Dg~~~v~~~~~~fDvIi~D~tdp~g 162 (282)
T COG0421 84 GGGDGGTLREVLKHLPVERITMVEIDPAVIELARKYLPEPSGGA-DDPRVEIIIDDGVEFLRDCEEKFDVIIVDSTDPVG 162 (282)
T ss_pred CCCccHHHHHHHhcCCcceEEEEEcCHHHHHHHHHhccCccccc-CCCceEEEeccHHHHHHhCCCcCCEEEEcCCCCCC
Confidence 99999999999998777899999999999999999997543222 279999999999999 445589999999999865
Q ss_pred CCCCCCcHHHHHHHHhhccCCcEEEEEecCCCccccccccchhHHHHHHHHHHHHHhcC-ceEEEEcCCCCce---EEEE
Q 035593 163 LLSELEDPNTWEKLRQCLRKGGRIMVNVGGSCVEAEDSRRDGKVVMEATLKAMHKVFGK-KLYVLSLGNRKDD---SLIA 238 (269)
Q Consensus 163 ~~~~l~~~e~~~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~F~~-~v~~~~~~~~~n~---v~~~ 238 (269)
....|++.+||+.|+++|+++|++++|..++.. . ........+.++++|+. ..+...++..... +.++
T Consensus 163 p~~~Lft~eFy~~~~~~L~~~Gi~v~q~~~~~~-------~-~~~~~~~~~~~~~vf~~~~~~~~~ipt~~~g~~~f~~~ 234 (282)
T COG0421 163 PAEALFTEEFYEGCRRALKEDGIFVAQAGSPFL-------Q-DEEIALAYRNVSRVFSIVPPYVAPIPTYPSGFWGFIVA 234 (282)
T ss_pred cccccCCHHHHHHHHHhcCCCcEEEEecCCccc-------c-hHHHHHHHHHHHhhccccccceeccceecCCceEEEEe
Confidence 556899999999999999999999999665432 1 23567888999999973 2444444443322 4555
Q ss_pred e
Q 035593 239 L 239 (269)
Q Consensus 239 ~ 239 (269)
+
T Consensus 235 s 235 (282)
T COG0421 235 S 235 (282)
T ss_pred e
Confidence 5
No 8
>TIGR00417 speE spermidine synthase. the SpeE subunit of spermidine synthase catalysesthe reaction (putrescine + S-adenosylmethioninamine = spermidine + 5'-methylthioadenosine) and is involved in polyamine biosynthesis and in the biosynthesis of spermidine from arganine. The region between residues 77 and 120 of the seed alignment is thought to be involved in binding to decarboxylated SAM.
Probab=99.96 E-value=1.3e-27 Score=209.56 Aligned_cols=210 Identities=16% Similarity=0.234 Sum_probs=163.4
Q ss_pred CCCccEEEEEecCCCeEEEEEeecCCCCcccceEEEEecCCCceeeeeecCCcccchHHHHHhcCCCCC--CCCcEEEEc
Q 035593 8 ADDVKIIAKFRSRYNYIRVLEVSRKVDHPFAGARLLLLDGPGNIHSISYLFRSLTNTYFDAFATLPPIL--PPGPIGILG 85 (269)
Q Consensus 8 ~~~~~~i~~~~s~y~~i~V~e~~~~~~~~~~~~r~L~~~~~~~~qs~~~~~~~l~~~y~~~~~~~~~l~--~~~~VL~iG 85 (269)
.+-.++|++.+|+||+|.|+++.. + +|+|++|+ .+|+.. ..++.|++.+++.+.+. .+++||+||
T Consensus 14 ~~~~~~l~~~~s~~q~i~v~~~~~-----~--g~~l~ldg--~~q~~~----~~e~~y~e~l~~~~l~~~~~p~~VL~iG 80 (270)
T TIGR00417 14 MKVKKVLYHEKSEFQDLEIFETEE-----F--GNVLVLDG--VVQTTE----RDEFIYHEMIAHVPLFTHPNPKHVLVIG 80 (270)
T ss_pred EEeeeEEEEccCCCeeEEEEEcCC-----C--ceEEEECC--cccccC----chHHHHHHHhhhhHhhcCCCCCEEEEEc
Confidence 445689999999999999999975 2 69999999 688863 34578998887655432 478999999
Q ss_pred CcccHHHHHHHHHCCCceEEEEECChHHHHHHHHhcCccccccCCCCcEEEEEcccccc--ccCCCeeEEEEcCCCCCCC
Q 035593 86 FGAGSAARLILDLYPEAVIHGWELDPSVIKVAREFFALEKLEKSYPDRLFVYVGNALKA--SLKDGFSGILVDLFSKGSL 163 (269)
Q Consensus 86 ~G~G~~~~~l~~~~p~~~v~~vEidp~~~~~a~~~~~~~~~~~~~~~rv~~~~~D~~~~--~~~~~yD~I~~d~~~~~~~ 163 (269)
||+|.+++.++++.+..++++||+|+++++.|++++.... ....+++++++.+|++++ ...++||+|++|.+.+...
T Consensus 81 ~G~G~~~~~ll~~~~~~~v~~veid~~vi~~a~~~~~~~~-~~~~~~~v~i~~~D~~~~l~~~~~~yDvIi~D~~~~~~~ 159 (270)
T TIGR00417 81 GGDGGVLREVLKHKSVEKATLVDIDEKVIELSKKFLPSLA-GSYDDPRVDLQIDDGFKFLADTENTFDVIIVDSTDPVGP 159 (270)
T ss_pred CCchHHHHHHHhCCCcceEEEEeCCHHHHHHHHHHhHhhc-ccccCCceEEEECchHHHHHhCCCCccEEEEeCCCCCCc
Confidence 9999999999886556799999999999999999874211 112468999999999987 4467999999998876544
Q ss_pred CCCCCcHHHHHHHHhhccCCcEEEEEecCCCccccccccchhHHHHHHHHHHHHHhcCceEEE--EcCC--CC-ceEEEE
Q 035593 164 LSELEDPNTWEKLRQCLRKGGRIMVNVGGSCVEAEDSRRDGKVVMEATLKAMHKVFGKKLYVL--SLGN--RK-DDSLIA 238 (269)
Q Consensus 164 ~~~l~~~e~~~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~F~~~v~~~--~~~~--~~-n~v~~~ 238 (269)
...+++.+|++.++++|+|||+++++..++.. ....+..+.++++++|++ +..+ .++. ++ -..++|
T Consensus 160 ~~~l~~~ef~~~~~~~L~pgG~lv~~~~~~~~--------~~~~~~~~~~tl~~~F~~-v~~~~~~vp~~~~g~~~~~~a 230 (270)
T TIGR00417 160 AETLFTKEFYELLKKALNEDGIFVAQSESPWI--------QLELITDLKRDVKEAFPI-TEYYTANIPTYPSGLWTFTIG 230 (270)
T ss_pred ccchhHHHHHHHHHHHhCCCcEEEEcCCCccc--------CHHHHHHHHHHHHHHCCC-eEEEEEEcCccccchhEEEEE
Confidence 55788899999999999999999998655432 145678889999999984 4333 3332 23 345667
Q ss_pred ec
Q 035593 239 LT 240 (269)
Q Consensus 239 ~~ 240 (269)
++
T Consensus 231 s~ 232 (270)
T TIGR00417 231 SK 232 (270)
T ss_pred EC
Confidence 66
No 9
>PRK00536 speE spermidine synthase; Provisional
Probab=99.95 E-value=1.7e-26 Score=199.44 Aligned_cols=200 Identities=15% Similarity=0.115 Sum_probs=153.2
Q ss_pred CCccEEEEEecCCCeEEEEEeecCCCCcccceEEEEecCCCceeeeeecCCcccchHHHHHhcCCCCC--CCCcEEEEcC
Q 035593 9 DDVKIIAKFRSRYNYIRVLEVSRKVDHPFAGARLLLLDGPGNIHSISYLFRSLTNTYFDAFATLPPIL--PPGPIGILGF 86 (269)
Q Consensus 9 ~~~~~i~~~~s~y~~i~V~e~~~~~~~~~~~~r~L~~~~~~~~qs~~~~~~~l~~~y~~~~~~~~~l~--~~~~VL~iG~ 86 (269)
.-.+++++.+|+||+|.|+|+.. | +|+|.+|+ +|.. ..-++.||+.|++.|.+. +|++||+||+
T Consensus 16 ~v~~~L~~~kS~~Q~i~i~es~~-----f--Gr~LvLD~---~~~t----e~dEfiYHEmLvHppl~~h~~pk~VLIiGG 81 (262)
T PRK00536 16 TIEAKLLDVRSEHNILEIFKSKD-----F--GEIAMLNK---QLLF----KNFLHIESELLAHMGGCTKKELKEVLIVDG 81 (262)
T ss_pred EEEEEEEccCCCCcEEEEEEccc-----c--ccEEEEee---eeee----cchhhhHHHHHHHHHHhhCCCCCeEEEEcC
Confidence 34578999999999999999985 4 79999994 4432 235688999988776543 5899999999
Q ss_pred cccHHHHHHHHHCCCceEEEEECChHHHHHHHHhcCccccccCCCCcEEEEEccccccccCCCeeEEEEcCCCCCCCCCC
Q 035593 87 GAGSAARLILDLYPEAVIHGWELDPSVIKVAREFFALEKLEKSYPDRLFVYVGNALKASLKDGFSGILVDLFSKGSLLSE 166 (269)
Q Consensus 87 G~G~~~~~l~~~~p~~~v~~vEidp~~~~~a~~~~~~~~~~~~~~~rv~~~~~D~~~~~~~~~yD~I~~d~~~~~~~~~~ 166 (269)
|.|..+++++++ |. +|+.||||++|+++||+++..-. .+.++||++++.. ..+ ...++||+||+|..
T Consensus 82 GDGg~~REvLkh-~~-~v~mVeID~~Vv~~~k~~lP~~~-~~~~DpRv~l~~~-~~~-~~~~~fDVIIvDs~-------- 148 (262)
T PRK00536 82 FDLELAHQLFKY-DT-HVDFVQADEKILDSFISFFPHFH-EVKNNKNFTHAKQ-LLD-LDIKKYDLIICLQE-------- 148 (262)
T ss_pred CchHHHHHHHCc-CC-eeEEEECCHHHHHHHHHHCHHHH-HhhcCCCEEEeeh-hhh-ccCCcCCEEEEcCC--------
Confidence 999999999995 55 99999999999999999985211 2457899999972 111 23478999999953
Q ss_pred CCcHHHHHHHHhhccCCcEEEEEecCCCccccccccchhHHHHHHHHHHHHHhcC-ceEEEEcCCCCce-EEEEecCCCC
Q 035593 167 LEDPNTWEKLRQCLRKGGRIMVNVGGSCVEAEDSRRDGKVVMEATLKAMHKVFGK-KLYVLSLGNRKDD-SLIALTGELP 244 (269)
Q Consensus 167 l~~~e~~~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~F~~-~v~~~~~~~~~n~-v~~~~~~~~~ 244 (269)
.+++||+.++++|+|||+++++..++... ...+..+.++++++|+. ..|...++..+.+ ..+|++...+
T Consensus 149 -~~~~fy~~~~~~L~~~Gi~v~Qs~sp~~~--------~~~~~~i~~~l~~~F~~v~~y~~~vp~~g~wgf~~aS~~~~p 219 (262)
T PRK00536 149 -PDIHKIDGLKRMLKEDGVFISVAKHPLLE--------HVSMQNALKNMGDFFSIAMPFVAPLRILSNKGYIYASFKTHP 219 (262)
T ss_pred -CChHHHHHHHHhcCCCcEEEECCCCcccC--------HHHHHHHHHHHHhhCCceEEEEecCCCcchhhhheecCCCCC
Confidence 35799999999999999999998777531 44688999999999972 2344444444433 4667765333
No 10
>PRK03612 spermidine synthase; Provisional
Probab=99.93 E-value=1.7e-24 Score=205.33 Aligned_cols=217 Identities=21% Similarity=0.237 Sum_probs=159.4
Q ss_pred CCccEEEEEecCCCeEEEEEeecCCCCcccceEEEEecCCCceeeeeecCCcccchHHHHHhcCCC--CCCCCcEEEEcC
Q 035593 9 DDVKIIAKFRSRYNYIRVLEVSRKVDHPFAGARLLLLDGPGNIHSISYLFRSLTNTYFDAFATLPP--ILPPGPIGILGF 86 (269)
Q Consensus 9 ~~~~~i~~~~s~y~~i~V~e~~~~~~~~~~~~r~L~~~~~~~~qs~~~~~~~l~~~y~~~~~~~~~--l~~~~~VL~iG~ 86 (269)
...+++++++|+||+|.|.+++...| +.+.|++|+ .+|... .-+..|++.+.+.+. ..++++||+|||
T Consensus 237 ~~~~v~~~~~s~yq~i~v~~~~~~~~----~~~~L~ldG--~~q~s~----~de~~y~e~l~~~~l~~~~~~~rVL~IG~ 306 (521)
T PRK03612 237 YGDPVVYAEQTPYQRIVVTRRGNGRG----PDLRLYLNG--RLQFSS----RDEYRYHEALVHPAMAASARPRRVLVLGG 306 (521)
T ss_pred ccCeEEEEccCCCeEEEEEEecCCCC----cceEEEECC--EeeccC----ccHHHHHHHHHHHHHhhCCCCCeEEEEcC
Confidence 45689999999999999999753111 247889999 567433 124668887754332 235889999999
Q ss_pred cccHHHHHHHHHCCC-ceEEEEECChHHHHHHHHhcCccccc--cCCCCcEEEEEcccccc--ccCCCeeEEEEcCCCCC
Q 035593 87 GAGSAARLILDLYPE-AVIHGWELDPSVIKVAREFFALEKLE--KSYPDRLFVYVGNALKA--SLKDGFSGILVDLFSKG 161 (269)
Q Consensus 87 G~G~~~~~l~~~~p~-~~v~~vEidp~~~~~a~~~~~~~~~~--~~~~~rv~~~~~D~~~~--~~~~~yD~I~~d~~~~~ 161 (269)
|+|..+++++++ +. .+|++||+||+|++.|++++.++.+. ..+++|++++++|++++ ..+++||+|++|..++.
T Consensus 307 G~G~~~~~ll~~-~~v~~v~~VEid~~vi~~ar~~~~l~~~~~~~~~dprv~vi~~Da~~~l~~~~~~fDvIi~D~~~~~ 385 (521)
T PRK03612 307 GDGLALREVLKY-PDVEQVTLVDLDPAMTELARTSPALRALNGGALDDPRVTVVNDDAFNWLRKLAEKFDVIIVDLPDPS 385 (521)
T ss_pred CccHHHHHHHhC-CCcCeEEEEECCHHHHHHHHhCCcchhhhccccCCCceEEEEChHHHHHHhCCCCCCEEEEeCCCCC
Confidence 999999999974 65 79999999999999999965433221 23468999999999998 45679999999987664
Q ss_pred CC-CCCCCcHHHHHHHHhhccCCcEEEEEecCCCccccccccchhHHHHHHHHHHHHH-hcCceEEEEcCCCCce-EEEE
Q 035593 162 SL-LSELEDPNTWEKLRQCLRKGGRIMVNVGGSCVEAEDSRRDGKVVMEATLKAMHKV-FGKKLYVLSLGNRKDD-SLIA 238 (269)
Q Consensus 162 ~~-~~~l~~~e~~~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-F~~~v~~~~~~~~~n~-v~~~ 238 (269)
.. ..++++.+|++.++++|+|||++++|..++.. . ...+.++.++++++ |....+...++..+.+ ..+|
T Consensus 386 ~~~~~~L~t~ef~~~~~~~L~pgG~lv~~~~~~~~-------~-~~~~~~i~~~l~~~gf~v~~~~~~vps~g~w~f~~a 457 (521)
T PRK03612 386 NPALGKLYSVEFYRLLKRRLAPDGLLVVQSTSPYF-------A-PKAFWSIEATLEAAGLATTPYHVNVPSFGEWGFVLA 457 (521)
T ss_pred CcchhccchHHHHHHHHHhcCCCeEEEEecCCccc-------c-hHHHHHHHHHHHHcCCEEEEEEeCCCCcchhHHHee
Confidence 32 24788999999999999999999999866542 1 34577899999999 7322333344444332 3566
Q ss_pred ecCCCC
Q 035593 239 LTGELP 244 (269)
Q Consensus 239 ~~~~~~ 244 (269)
++.+.+
T Consensus 458 s~~~~~ 463 (521)
T PRK03612 458 GAGARP 463 (521)
T ss_pred eCCCCc
Confidence 665433
No 11
>COG4262 Predicted spermidine synthase with an N-terminal membrane domain [General function prediction only]
Probab=99.91 E-value=2.9e-23 Score=181.90 Aligned_cols=211 Identities=21% Similarity=0.259 Sum_probs=163.4
Q ss_pred CccEEEEEecCCCeEEEEEeecCCCCcccceEEEEecCCCceeeeeecCCcccchHHHHHhcCC--CCCCCCcEEEEcCc
Q 035593 10 DVKIIAKFRSRYNYIRVLEVSRKVDHPFAGARLLLLDGPGNIHSISYLFRSLTNTYFDAFATLP--PILPPGPIGILGFG 87 (269)
Q Consensus 10 ~~~~i~~~~s~y~~i~V~e~~~~~~~~~~~~r~L~~~~~~~~qs~~~~~~~l~~~y~~~~~~~~--~l~~~~~VL~iG~G 87 (269)
..++||..+|+||.|.|.+-.+ -+.|++|+ ..|-.. .-+..||+.+..-+ .+....+||++|+|
T Consensus 234 gdeIIh~~qspYQ~iVvTr~g~--------d~rLYldG--~LQfsT----rDe~RYhEsLV~pals~~~~a~~vLvlGGG 299 (508)
T COG4262 234 GDEIIHAIQSPYQRIVVTRRGD--------DLRLYLDG--GLQFST----RDEYRYHESLVYPALSSVRGARSVLVLGGG 299 (508)
T ss_pred cCceeeeccCccceEEEEEecC--------ceEEEEcC--ceeeee----chhhhhhheeeecccccccccceEEEEcCC
Confidence 3579999999999999999764 35688998 467543 23567998875332 23457899999999
Q ss_pred ccHHHHHHHHHCC-CceEEEEECChHHHHHHHHhcCcc--ccccCCCCcEEEEEcccccc--ccCCCeeEEEEcCCCCCC
Q 035593 88 AGSAARLILDLYP-EAVIHGWELDPSVIKVAREFFALE--KLEKSYPDRLFVYVGNALKA--SLKDGFSGILVDLFSKGS 162 (269)
Q Consensus 88 ~G~~~~~l~~~~p-~~~v~~vEidp~~~~~a~~~~~~~--~~~~~~~~rv~~~~~D~~~~--~~~~~yD~I~~d~~~~~~ 162 (269)
.|..++++++ +| -.+|+-||+||+|++.+++..-+. +-++..+||++++..|+.+| ...++||+||+|..++..
T Consensus 300 DGLAlRellk-yP~~~qI~lVdLDP~miela~~~~vlr~~N~~sf~dpRv~Vv~dDAf~wlr~a~~~fD~vIVDl~DP~t 378 (508)
T COG4262 300 DGLALRELLK-YPQVEQITLVDLDPRMIELASHATVLRALNQGSFSDPRVTVVNDDAFQWLRTAADMFDVVIVDLPDPST 378 (508)
T ss_pred chHHHHHHHh-CCCcceEEEEecCHHHHHHhhhhhHhhhhccCCccCCeeEEEeccHHHHHHhhcccccEEEEeCCCCCC
Confidence 9999999998 79 569999999999999999654221 11355789999999999999 566799999999998864
Q ss_pred C-CCCCCcHHHHHHHHhhccCCcEEEEEecCCCccccccccchhHHHHHHHHHHHHH-hcCceEEEEcCCCCce-EEEEe
Q 035593 163 L-LSELEDPNTWEKLRQCLRKGGRIMVNVGGSCVEAEDSRRDGKVVMEATLKAMHKV-FGKKLYVLSLGNRKDD-SLIAL 239 (269)
Q Consensus 163 ~-~~~l~~~e~~~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-F~~~v~~~~~~~~~n~-v~~~~ 239 (269)
. ...+++.|||..++++|+++|+++++..+++.. ...+-++.++++++ |...-|.+.++.-+.+ +++|.
T Consensus 379 ps~~rlYS~eFY~ll~~~l~e~Gl~VvQags~y~t--------p~vfw~i~aTik~AG~~~~Pyhv~VPTFGeWGf~l~~ 450 (508)
T COG4262 379 PSIGRLYSVEFYRLLSRHLAETGLMVVQAGSPYFT--------PRVFWRIDATIKSAGYRVWPYHVHVPTFGEWGFILAA 450 (508)
T ss_pred cchhhhhhHHHHHHHHHhcCcCceEEEecCCCccC--------CceeeeehhHHHhCcceeeeeEEecCcccccceeecc
Confidence 3 247899999999999999999999999888641 44677889999986 4222344456665554 56666
Q ss_pred cCCC
Q 035593 240 TGEL 243 (269)
Q Consensus 240 ~~~~ 243 (269)
..+.
T Consensus 451 ~~~~ 454 (508)
T COG4262 451 PGDA 454 (508)
T ss_pred cccC
Confidence 6654
No 12
>PF12847 Methyltransf_18: Methyltransferase domain; PDB: 3G2Q_A 3G2O_A 3G2M_B 3G2P_B 3D2L_B 1IM8_B 3NJR_A 3E05_H 3EVZ_A 3HM2_A ....
Probab=99.75 E-value=3.7e-18 Score=129.46 Aligned_cols=110 Identities=29% Similarity=0.492 Sum_probs=87.1
Q ss_pred CCCcEEEEcCcccHHHHHHHHHCCCceEEEEECChHHHHHHHHhcCccccccCCCCcEEEEEccc-cccccCCCeeEEEE
Q 035593 77 PPGPIGILGFGAGSAARLILDLYPEAVIHGWELDPSVIKVAREFFALEKLEKSYPDRLFVYVGNA-LKASLKDGFSGILV 155 (269)
Q Consensus 77 ~~~~VL~iG~G~G~~~~~l~~~~p~~~v~~vEidp~~~~~a~~~~~~~~~~~~~~~rv~~~~~D~-~~~~~~~~yD~I~~ 155 (269)
|+.+|||||||+|.++.++++++++.+|++||+||++++.|++++.... ..++++++++|+ ......++||+|++
T Consensus 1 p~~~vLDlGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~----~~~~i~~~~~d~~~~~~~~~~~D~v~~ 76 (112)
T PF12847_consen 1 PGGRVLDLGCGTGRLSIALARLFPGARVVGVDISPEMLEIARERAAEEG----LSDRITFVQGDAEFDPDFLEPFDLVIC 76 (112)
T ss_dssp TTCEEEEETTTTSHHHHHHHHHHTTSEEEEEESSHHHHHHHHHHHHHTT----TTTTEEEEESCCHGGTTTSSCEEEEEE
T ss_pred CCCEEEEEcCcCCHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHhcC----CCCCeEEEECccccCcccCCCCCEEEE
Confidence 5689999999999999999998899999999999999999999982111 257999999999 44466678999998
Q ss_pred cCCCCCCCCCCCCcHHHHHHHHhhccCCcEEEEEe
Q 035593 156 DLFSKGSLLSELEDPNTWEKLRQCLRKGGRIMVNV 190 (269)
Q Consensus 156 d~~~~~~~~~~l~~~e~~~~~~~~L~pgG~l~~~~ 190 (269)
..+......+.-...++++.+++.|+|||+++++.
T Consensus 77 ~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~lvi~~ 111 (112)
T PF12847_consen 77 SGFTLHFLLPLDERRRVLERIRRLLKPGGRLVINT 111 (112)
T ss_dssp CSGSGGGCCHHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred CCCccccccchhHHHHHHHHHHHhcCCCcEEEEEE
Confidence 76111111111123578999999999999999875
No 13
>KOG2352 consensus Predicted spermine/spermidine synthase [Amino acid transport and metabolism]
Probab=99.70 E-value=3.6e-17 Score=149.47 Aligned_cols=191 Identities=21% Similarity=0.260 Sum_probs=154.2
Q ss_pred eEEEEecCCCceeeeeecCC--cccchHHHHHh-cCCCC--------CCCCcEEEEcCcccHHHHHHHHHCCCceEEEEE
Q 035593 40 ARLLLLDGPGNIHSISYLFR--SLTNTYFDAFA-TLPPI--------LPPGPIGILGFGAGSAARLILDLYPEAVIHGWE 108 (269)
Q Consensus 40 ~r~L~~~~~~~~qs~~~~~~--~l~~~y~~~~~-~~~~l--------~~~~~VL~iG~G~G~~~~~l~~~~p~~~v~~vE 108 (269)
++....++...+||....++ .+...||+.|. .++.+ ....++|++|.|+|.++.++...+|..++++||
T Consensus 247 ~~l~~~~n~nv~q~~~k~~r~~~l~s~~h~~m~~g~aL~~n~~~~~~~~~~~~lvvg~ggG~l~sfl~~~~p~~~i~~ve 326 (482)
T KOG2352|consen 247 RRLPPCGNMNVVQSEAKKDRKPELASQYHQMMIGGLALIMNRPPQKLDTGGKQLVVGLGGGGLPSFLHMSLPKFQITAVE 326 (482)
T ss_pred ccccCCCCcceecCchhcccCcccCcchhhhhhccceeccccCchhccccCcEEEEecCCCccccceeeecCccceeEEE
Confidence 44455565567888765444 46788999984 33221 126799999999999999999999999999999
Q ss_pred CChHHHHHHHHhcCccccccCCCCcEEEEEcccccc--------ccCCCeeEEEEcCCCCCCC-----CCCCCcHHHHHH
Q 035593 109 LDPSVIKVAREFFALEKLEKSYPDRLFVYVGNALKA--------SLKDGFSGILVDLFSKGSL-----LSELEDPNTWEK 175 (269)
Q Consensus 109 idp~~~~~a~~~~~~~~~~~~~~~rv~~~~~D~~~~--------~~~~~yD~I~~d~~~~~~~-----~~~l~~~e~~~~ 175 (269)
+||+|++.|+.+|++.. +.|.+++..|+.++ ....+||++++|..+++.. ++.+....++..
T Consensus 327 ~dP~~l~va~q~f~f~q-----~~r~~V~i~dGl~~~~~~~k~~~~~~~~dvl~~dvds~d~~g~~~pp~~fva~~~l~~ 401 (482)
T KOG2352|consen 327 IDPEMLEVATQYFGFMQ-----SDRNKVHIADGLDFLQRTAKSQQEDICPDVLMVDVDSKDSHGMQCPPPAFVAQVALQP 401 (482)
T ss_pred EChhHhhccHhhhchhh-----hhhhhhhHhhchHHHHHHhhccccccCCcEEEEECCCCCcccCcCCchHHHHHHHHHH
Confidence 99999999999999865 45899999999987 1456899999998777521 235667899999
Q ss_pred HHhhccCCcEEEEEecCCCccccccccchhHHHHHHHHHHHHHhcCceEEEEcCCCCceEEEEecCCCCCH
Q 035593 176 LRQCLRKGGRIMVNVGGSCVEAEDSRRDGKVVMEATLKAMHKVFGKKLYVLSLGNRKDDSLIALTGELPDL 246 (269)
Q Consensus 176 ~~~~L~pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~F~~~v~~~~~~~~~n~v~~~~~~~~~~~ 246 (269)
++..|.|.|++++|+..+. ..+..+++..|+.+|+ ..+.+..+++.|.+++|...+....
T Consensus 402 ~k~~l~p~g~f~inlv~r~----------~~~~~~~~~~l~~vf~-~l~~~~~~~~~N~il~~~~~~~~~~ 461 (482)
T KOG2352|consen 402 VKMILPPRGMFIINLVTRN----------SSFKDEVLMNLAKVFP-QLYHHQLEEDVNEILIGQMPPKQKP 461 (482)
T ss_pred HhhccCccceEEEEEecCC----------cchhHHHHHhhhhhhH-HHhhhhccCCCceeEEeecChhcCc
Confidence 9999999999999996552 4567899999999997 7888888899999999998887433
No 14
>KOG1562 consensus Spermidine synthase [Amino acid transport and metabolism]
Probab=99.66 E-value=2e-16 Score=135.81 Aligned_cols=206 Identities=16% Similarity=0.185 Sum_probs=153.8
Q ss_pred ccEEEEEecCCCeEEEEEeecCCCCcccceEEEEecCCCceeeeeecCCcccchHHHHHhcCCC--CCCCCcEEEEcCcc
Q 035593 11 VKIIAKFRSRYNYIRVLEVSRKVDHPFAGARLLLLDGPGNIHSISYLFRSLTNTYFDAFATLPP--ILPPGPIGILGFGA 88 (269)
Q Consensus 11 ~~~i~~~~s~y~~i~V~e~~~~~~~~~~~~r~L~~~~~~~~qs~~~~~~~l~~~y~~~~~~~~~--l~~~~~VL~iG~G~ 88 (269)
.++++.++|.||.+.|+++.. + ++.|.+|+ .+|-.. .-++.|.+.++++|. +.+|+++|+||.|.
T Consensus 66 e~vl~~ekS~~qdvlvf~s~t-----y--g~vlvlDg--viqlte----~de~~Yqemi~~l~l~s~~npkkvlVVgggD 132 (337)
T KOG1562|consen 66 EKVLHDEKSDSQDVLVFESAT-----Y--GKVLVLDG--VIQLTE----RDEFAYQEMIAHLALCSHPNPKKVLVVGGGD 132 (337)
T ss_pred eeecccCchhHHHHHHHHHhh-----h--heeeeeCC--eeeCCc----cccccceeeeeccccccCCCCCeEEEEecCC
Confidence 357889999999999999864 3 67888888 677543 356889888877765 44699999999999
Q ss_pred cHHHHHHHHHCCCceEEEEECChHHHHHHHHhcC-ccccccCCCCcEEEEEcccccc---ccCCCeeEEEEcCCCCCCCC
Q 035593 89 GSAARLILDLYPEAVIHGWELDPSVIKVAREFFA-LEKLEKSYPDRLFVYVGNALKA---SLKDGFSGILVDLFSKGSLL 164 (269)
Q Consensus 89 G~~~~~l~~~~p~~~v~~vEidp~~~~~a~~~~~-~~~~~~~~~~rv~~~~~D~~~~---~~~~~yD~I~~d~~~~~~~~ 164 (269)
|...+...+|-.-.+|+.+|||..+++..++++. +.. .+.++++.++.||+..| ...++||+|+.|..++....
T Consensus 133 ggvlrevikH~~ve~i~~~eiD~~Vie~sk~y~p~la~--gy~~~~v~l~iGDG~~fl~~~~~~~~dVii~dssdpvgpa 210 (337)
T KOG1562|consen 133 GGVLREVIKHKSVENILLCEIDENVIESSKQYLPTLAC--GYEGKKVKLLIGDGFLFLEDLKENPFDVIITDSSDPVGPA 210 (337)
T ss_pred ccceeeeeccccccceeeehhhHHHHHHHHHHhHHHhc--ccCCCceEEEeccHHHHHHHhccCCceEEEEecCCccchH
Confidence 9999999887224599999999999999999984 211 24689999999999998 34789999999987775444
Q ss_pred CCCCcHHHHHHHHhhccCCcEEEEEecCCCccccccccchhHHHHHHHHHHHHHhcCceEEE-EcC--CCCce-EEEEe
Q 035593 165 SELEDPNTWEKLRQCLRKGGRIMVNVGGSCVEAEDSRRDGKVVMEATLKAMHKVFGKKLYVL-SLG--NRKDD-SLIAL 239 (269)
Q Consensus 165 ~~l~~~e~~~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~F~~~v~~~-~~~--~~~n~-v~~~~ 239 (269)
-.++...+|+.+.++||++|++++..-.-.. ....+....+.-+.+|+..-|.+ .++ +.+.. ..+|+
T Consensus 211 ~~lf~~~~~~~v~~aLk~dgv~~~q~ec~wl--------~~~~i~e~r~~~~~~f~~t~ya~ttvPTypsg~igf~l~s 281 (337)
T KOG1562|consen 211 CALFQKPYFGLVLDALKGDGVVCTQGECMWL--------HLDYIKEGRSFCYVIFDLTAYAITTVPTYPSGRIGFMLCS 281 (337)
T ss_pred HHHHHHHHHHHHHHhhCCCcEEEEecceehH--------HHHHHHHHHHhHHHhcCccceeeecCCCCccceEEEEEec
Confidence 4678899999999999999999987633211 13355566666667787433333 333 33333 45666
No 15
>COG4123 Predicted O-methyltransferase [General function prediction only]
Probab=99.63 E-value=7.1e-15 Score=125.50 Aligned_cols=156 Identities=18% Similarity=0.213 Sum_probs=115.5
Q ss_pred cCCCCCCCCcEEEEcCcccHHHHHHHHHCCCceEEEEECChHHHHHHHHhcCccccccCCCCcEEEEEcccccc---ccC
Q 035593 71 TLPPILPPGPIGILGFGAGSAARLILDLYPEAVIHGWELDPSVIKVAREFFALEKLEKSYPDRLFVYVGNALKA---SLK 147 (269)
Q Consensus 71 ~~~~l~~~~~VL~iG~G~G~~~~~l~~~~p~~~v~~vEidp~~~~~a~~~~~~~~~~~~~~~rv~~~~~D~~~~---~~~ 147 (269)
.+.......+|||||||+|.++..++++++.++|++||+++++++.|++...++.| ..|++++++|..++ ...
T Consensus 38 ~~~~~~~~~~IlDlGaG~G~l~L~la~r~~~a~I~~VEiq~~~a~~A~~nv~ln~l----~~ri~v~~~Di~~~~~~~~~ 113 (248)
T COG4123 38 AFAPVPKKGRILDLGAGNGALGLLLAQRTEKAKIVGVEIQEEAAEMAQRNVALNPL----EERIQVIEADIKEFLKALVF 113 (248)
T ss_pred hhcccccCCeEEEecCCcCHHHHHHhccCCCCcEEEEEeCHHHHHHHHHHHHhCcc----hhceeEehhhHHHhhhcccc
Confidence 33334448999999999999999999988889999999999999999999988775 47999999999998 334
Q ss_pred CCeeEEEEcCCCCC--CC------------CCCCCcHHHHHHHHhhccCCcEEEEEecCCCccccccccchhHHHHHHHH
Q 035593 148 DGFSGILVDLFSKG--SL------------LSELEDPNTWEKLRQCLRKGGRIMVNVGGSCVEAEDSRRDGKVVMEATLK 213 (269)
Q Consensus 148 ~~yD~I~~d~~~~~--~~------------~~~l~~~e~~~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 213 (269)
.+||+|+++.+--. .. ...+.-+++++.+.+.|||||.+.+-. + ...+.+++.
T Consensus 114 ~~fD~Ii~NPPyf~~~~~~~~~~~~~~Ar~e~~~~le~~i~~a~~~lk~~G~l~~V~--r-----------~erl~ei~~ 180 (248)
T COG4123 114 ASFDLIICNPPYFKQGSRLNENPLRAIARHEITLDLEDLIRAAAKLLKPGGRLAFVH--R-----------PERLAEIIE 180 (248)
T ss_pred cccCEEEeCCCCCCCccccCcChhhhhhhhhhcCCHHHHHHHHHHHccCCCEEEEEe--c-----------HHHHHHHHH
Confidence 57999999853221 11 012334799999999999999998865 3 224667888
Q ss_pred HHHH-HhcC-ceEEE-E-cCCCCceEEEEecCCC
Q 035593 214 AMHK-VFGK-KLYVL-S-LGNRKDDSLIALTGEL 243 (269)
Q Consensus 214 ~l~~-~F~~-~v~~~-~-~~~~~n~v~~~~~~~~ 243 (269)
.|++ -|.. .+..+ + .....|.+++......
T Consensus 181 ~l~~~~~~~k~i~~V~p~~~k~A~~vLv~~~k~~ 214 (248)
T COG4123 181 LLKSYNLEPKRIQFVYPKIGKAANRVLVEAIKGG 214 (248)
T ss_pred HHHhcCCCceEEEEecCCCCCcceEEEEEEecCC
Confidence 8888 4542 33333 2 2334567777665543
No 16
>PRK00107 gidB 16S rRNA methyltransferase GidB; Reviewed
Probab=99.62 E-value=9.2e-15 Score=121.20 Aligned_cols=107 Identities=20% Similarity=0.114 Sum_probs=88.5
Q ss_pred CCCCCCCcEEEEcCcccHHHHHHHHHCCCceEEEEECChHHHHHHHHhcCccccccCCCCcEEEEEccccccccCCCeeE
Q 035593 73 PPILPPGPIGILGFGAGSAARLILDLYPEAVIHGWELDPSVIKVAREFFALEKLEKSYPDRLFVYVGNALKASLKDGFSG 152 (269)
Q Consensus 73 ~~l~~~~~VL~iG~G~G~~~~~l~~~~p~~~v~~vEidp~~~~~a~~~~~~~~~~~~~~~rv~~~~~D~~~~~~~~~yD~ 152 (269)
+.+.++.+|||||||+|..+..+++..|+.+|+++|+++++++.|+++..... -++++++.+|+.++...++||+
T Consensus 41 ~~l~~g~~VLDiGcGtG~~al~la~~~~~~~V~giD~s~~~l~~A~~~~~~~~-----l~~i~~~~~d~~~~~~~~~fDl 115 (187)
T PRK00107 41 PYLPGGERVLDVGSGAGFPGIPLAIARPELKVTLVDSLGKKIAFLREVAAELG-----LKNVTVVHGRAEEFGQEEKFDV 115 (187)
T ss_pred hhcCCCCeEEEEcCCCCHHHHHHHHHCCCCeEEEEeCcHHHHHHHHHHHHHcC-----CCCEEEEeccHhhCCCCCCccE
Confidence 34445899999999999999999987889999999999999999998875432 2349999999988744678999
Q ss_pred EEEcCCCCCCCCCCCCcHHHHHHHHhhccCCcEEEEEecC
Q 035593 153 ILVDLFSKGSLLSELEDPNTWEKLRQCLRKGGRIMVNVGG 192 (269)
Q Consensus 153 I~~d~~~~~~~~~~l~~~e~~~~~~~~L~pgG~l~~~~~~ 192 (269)
|+++... ...++++.+++.|+|||.+++-...
T Consensus 116 V~~~~~~--------~~~~~l~~~~~~LkpGG~lv~~~~~ 147 (187)
T PRK00107 116 VTSRAVA--------SLSDLVELCLPLLKPGGRFLALKGR 147 (187)
T ss_pred EEEcccc--------CHHHHHHHHHHhcCCCeEEEEEeCC
Confidence 9986532 1368999999999999999987643
No 17
>PF05175 MTS: Methyltransferase small domain; InterPro: IPR007848 This domain is found in ribosomal RNA small subunit methyltransferase C and in other methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 1WY7_A 1DUS_A 2OZV_A 2PJD_A 1VQ1_A 1NV9_A 1SG9_C 1NV8_A 3Q87_B 3DMF_A ....
Probab=99.62 E-value=5.5e-15 Score=120.92 Aligned_cols=130 Identities=18% Similarity=0.239 Sum_probs=96.5
Q ss_pred CCCcEEEEcCcccHHHHHHHHHCCCceEEEEECChHHHHHHHHhcCccccccCCCCcEEEEEccccccccCCCeeEEEEc
Q 035593 77 PPGPIGILGFGAGSAARLILDLYPEAVIHGWELDPSVIKVAREFFALEKLEKSYPDRLFVYVGNALKASLKDGFSGILVD 156 (269)
Q Consensus 77 ~~~~VL~iG~G~G~~~~~l~~~~p~~~v~~vEidp~~~~~a~~~~~~~~~~~~~~~rv~~~~~D~~~~~~~~~yD~I~~d 156 (269)
+..+|||+|||+|.++..++++.|..+|+++|+++.+++.|++++..+.+ ..++++.+|..+....++||+|+++
T Consensus 31 ~~~~vLDlG~G~G~i~~~la~~~~~~~v~~vDi~~~a~~~a~~n~~~n~~-----~~v~~~~~d~~~~~~~~~fD~Iv~N 105 (170)
T PF05175_consen 31 KGGRVLDLGCGSGVISLALAKRGPDAKVTAVDINPDALELAKRNAERNGL-----ENVEVVQSDLFEALPDGKFDLIVSN 105 (170)
T ss_dssp TTCEEEEETSTTSHHHHHHHHTSTCEEEEEEESBHHHHHHHHHHHHHTTC-----TTEEEEESSTTTTCCTTCEEEEEE-
T ss_pred cCCeEEEecCChHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHHHhcCc-----cccccccccccccccccceeEEEEc
Confidence 67899999999999999999988888999999999999999999865532 2399999999887557899999998
Q ss_pred CCCCCCCCC-CCCcHHHHHHHHhhccCCcEEEEEecCCCccccccccchhHHHHHHHHHHHHHhcCceEEEE
Q 035593 157 LFSKGSLLS-ELEDPNTWEKLRQCLRKGGRIMVNVGGSCVEAEDSRRDGKVVMEATLKAMHKVFGKKLYVLS 227 (269)
Q Consensus 157 ~~~~~~~~~-~l~~~e~~~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~F~~~v~~~~ 227 (269)
.+-...... .....++++.++++|+|||.+.+....... . ...+++.|+ .+..+.
T Consensus 106 PP~~~~~~~~~~~~~~~i~~a~~~Lk~~G~l~lv~~~~~~------------~---~~~l~~~f~-~~~~~~ 161 (170)
T PF05175_consen 106 PPFHAGGDDGLDLLRDFIEQARRYLKPGGRLFLVINSHLG------------Y---ERLLKELFG-DVEVVA 161 (170)
T ss_dssp --SBTTSHCHHHHHHHHHHHHHHHEEEEEEEEEEEETTSC------------H---HHHHHHHHS---EEEE
T ss_pred cchhcccccchhhHHHHHHHHHHhccCCCEEEEEeecCCC------------h---HHHHHHhcC-CEEEEE
Confidence 653322111 112468999999999999999775543211 1 122899997 565554
No 18
>COG2226 UbiE Methylase involved in ubiquinone/menaquinone biosynthesis [Coenzyme metabolism]
Probab=99.59 E-value=3.3e-14 Score=121.29 Aligned_cols=116 Identities=20% Similarity=0.256 Sum_probs=93.9
Q ss_pred hcCCCCCCCCcEEEEcCcccHHHHHHHHHCCCceEEEEECChHHHHHHHHhcCccccccCCCCcEEEEEcccccc-ccCC
Q 035593 70 ATLPPILPPGPIGILGFGAGSAARLILDLYPEAVIHGWELDPSVIKVAREFFALEKLEKSYPDRLFVYVGNALKA-SLKD 148 (269)
Q Consensus 70 ~~~~~l~~~~~VL~iG~G~G~~~~~l~~~~p~~~v~~vEidp~~~~~a~~~~~~~~~~~~~~~rv~~~~~D~~~~-~~~~ 148 (269)
...+...|+.+|||||||||-++..+++..+..+|+++|+++.|++.|+++..-.. ...++++++||.+. .+++
T Consensus 44 i~~~~~~~g~~vLDva~GTGd~a~~~~k~~g~g~v~~~D~s~~ML~~a~~k~~~~~-----~~~i~fv~~dAe~LPf~D~ 118 (238)
T COG2226 44 ISLLGIKPGDKVLDVACGTGDMALLLAKSVGTGEVVGLDISESMLEVAREKLKKKG-----VQNVEFVVGDAENLPFPDN 118 (238)
T ss_pred HHhhCCCCCCEEEEecCCccHHHHHHHHhcCCceEEEEECCHHHHHHHHHHhhccC-----ccceEEEEechhhCCCCCC
Confidence 34434448999999999999999999998888999999999999999999975322 12399999999999 7889
Q ss_pred CeeEEEEcCCCCCCCCCCCCcHHHHHHHHhhccCCcEEEEEecCCC
Q 035593 149 GFSGILVDLFSKGSLLSELEDPNTWEKLRQCLRKGGRIMVNVGGSC 194 (269)
Q Consensus 149 ~yD~I~~d~~~~~~~~~~l~~~e~~~~~~~~L~pgG~l~~~~~~~~ 194 (269)
+||+|.+.-. ....-.-+..+++++|+|||||++++.-.+..
T Consensus 119 sFD~vt~~fg----lrnv~d~~~aL~E~~RVlKpgG~~~vle~~~p 160 (238)
T COG2226 119 SFDAVTISFG----LRNVTDIDKALKEMYRVLKPGGRLLVLEFSKP 160 (238)
T ss_pred ccCEEEeeeh----hhcCCCHHHHHHHHHHhhcCCeEEEEEEcCCC
Confidence 9999987421 11112347999999999999999998877664
No 19
>TIGR02469 CbiT precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit. This model recognizes the CbiT methylase which is responsible, in part (along with CbiE), for methylating precorrin-6y (or cobalt-precorrin-6y) at both the 5 and 15 positions as well as the concomitant decarbozylation at C-12. In many organisms, this protein is fused to the CbiE subunit. The fused protein, when found in organisms catalyzing the oxidative version of the cobalamin biosynthesis pathway, is called CobL.
Probab=99.58 E-value=4.7e-14 Score=108.38 Aligned_cols=106 Identities=19% Similarity=0.205 Sum_probs=85.8
Q ss_pred CCCCCCcEEEEcCcccHHHHHHHHHCCCceEEEEECChHHHHHHHHhcCccccccCCCCcEEEEEcccccc--ccCCCee
Q 035593 74 PILPPGPIGILGFGAGSAARLILDLYPEAVIHGWELDPSVIKVAREFFALEKLEKSYPDRLFVYVGNALKA--SLKDGFS 151 (269)
Q Consensus 74 ~l~~~~~VL~iG~G~G~~~~~l~~~~p~~~v~~vEidp~~~~~a~~~~~~~~~~~~~~~rv~~~~~D~~~~--~~~~~yD 151 (269)
.+.+..+|||+|||+|..+..+++..|+.+|+++|+++.+++.|++++.... .++++++.+|+... ...++||
T Consensus 16 ~~~~~~~vldlG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~D 90 (124)
T TIGR02469 16 RLRPGDVLWDIGAGSGSITIEAARLVPNGRVYAIERNPEALRLIERNARRFG-----VSNIVIVEGDAPEALEDSLPEPD 90 (124)
T ss_pred CCCCCCEEEEeCCCCCHHHHHHHHHCCCceEEEEcCCHHHHHHHHHHHHHhC-----CCceEEEeccccccChhhcCCCC
Confidence 3445679999999999999999998888999999999999999998764322 24689999998754 3346899
Q ss_pred EEEEcCCCCCCCCCCCCcHHHHHHHHhhccCCcEEEEEec
Q 035593 152 GILVDLFSKGSLLSELEDPNTWEKLRQCLRKGGRIMVNVG 191 (269)
Q Consensus 152 ~I~~d~~~~~~~~~~l~~~e~~~~~~~~L~pgG~l~~~~~ 191 (269)
+|+++.... ...++++.+++.|+|||.+++++.
T Consensus 91 ~v~~~~~~~-------~~~~~l~~~~~~Lk~gG~li~~~~ 123 (124)
T TIGR02469 91 RVFIGGSGG-------LLQEILEAIWRRLRPGGRIVLNAI 123 (124)
T ss_pred EEEECCcch-------hHHHHHHHHHHHcCCCCEEEEEec
Confidence 999864211 135899999999999999999874
No 20
>COG4106 Tam Trans-aconitate methyltransferase [General function prediction only]
Probab=99.57 E-value=2.2e-14 Score=118.32 Aligned_cols=106 Identities=20% Similarity=0.298 Sum_probs=93.4
Q ss_pred CCCCCCcEEEEcCcccHHHHHHHHHCCCceEEEEECChHHHHHHHHhcCccccccCCCCcEEEEEccccccccCCCeeEE
Q 035593 74 PILPPGPIGILGFGAGSAARLILDLYPEAVIHGWELDPSVIKVAREFFALEKLEKSYPDRLFVYVGNALKASLKDGFSGI 153 (269)
Q Consensus 74 ~l~~~~~VL~iG~G~G~~~~~l~~~~p~~~v~~vEidp~~~~~a~~~~~~~~~~~~~~~rv~~~~~D~~~~~~~~~yD~I 153 (269)
.+.++.+|.|||||.|..+..|.+++|.+.|+++|-|++|++.|+++. +++++..+|.+++......|+|
T Consensus 27 p~~~~~~v~DLGCGpGnsTelL~~RwP~A~i~GiDsS~~Mla~Aa~rl----------p~~~f~~aDl~~w~p~~~~dll 96 (257)
T COG4106 27 PLERPRRVVDLGCGPGNSTELLARRWPDAVITGIDSSPAMLAKAAQRL----------PDATFEEADLRTWKPEQPTDLL 96 (257)
T ss_pred CccccceeeecCCCCCHHHHHHHHhCCCCeEeeccCCHHHHHHHHHhC----------CCCceecccHhhcCCCCccchh
Confidence 356789999999999999999999999999999999999999998874 4689999999999988999999
Q ss_pred EEcCCCCCCCCCCCCcHHHHHHHHhhccCCcEEEEEecCC
Q 035593 154 LVDLFSKGSLLSELEDPNTWEKLRQCLRKGGRIMVNVGGS 193 (269)
Q Consensus 154 ~~d~~~~~~~~~~l~~~e~~~~~~~~L~pgG~l~~~~~~~ 193 (269)
+.++.-+ ..+.| .+.|..+...|.|||+|++++...
T Consensus 97 faNAvlq-WlpdH---~~ll~rL~~~L~Pgg~LAVQmPdN 132 (257)
T COG4106 97 FANAVLQ-WLPDH---PELLPRLVSQLAPGGVLAVQMPDN 132 (257)
T ss_pred hhhhhhh-hcccc---HHHHHHHHHhhCCCceEEEECCCc
Confidence 9876544 34444 589999999999999999998654
No 21
>TIGR00138 gidB 16S rRNA methyltransferase GidB. GidB (glucose-inhibited division protein B) appears to be present and in a single copy in nearly all complete eubacterial genomes. It is missing only from some obligate intracellular species of various lineages (Chlamydiae, Ehrlichia, Wolbachia, Anaplasma, Buchnera, etc.). GidB shows a methytransferase fold in its the crystal structure, and acts as a 7-methylguanosine (m(7)G) methyltransferase, apparently specific to 16S rRNA.
Probab=99.57 E-value=4.3e-14 Score=116.76 Aligned_cols=102 Identities=19% Similarity=0.112 Sum_probs=84.4
Q ss_pred CCCcEEEEcCcccHHHHHHHHHCCCceEEEEECChHHHHHHHHhcCccccccCCCCcEEEEEccccccccCCCeeEEEEc
Q 035593 77 PPGPIGILGFGAGSAARLILDLYPEAVIHGWELDPSVIKVAREFFALEKLEKSYPDRLFVYVGNALKASLKDGFSGILVD 156 (269)
Q Consensus 77 ~~~~VL~iG~G~G~~~~~l~~~~p~~~v~~vEidp~~~~~a~~~~~~~~~~~~~~~rv~~~~~D~~~~~~~~~yD~I~~d 156 (269)
++.+|||||||+|.++..++...++.+|++||+++++++.++++..... -++++++.+|+.++...++||+|+++
T Consensus 42 ~~~~vLDiGcGtG~~s~~la~~~~~~~V~~iD~s~~~~~~a~~~~~~~~-----~~~i~~i~~d~~~~~~~~~fD~I~s~ 116 (181)
T TIGR00138 42 DGKKVIDIGSGAGFPGIPLAIARPELKLTLLESNHKKVAFLREVKAELG-----LNNVEIVNGRAEDFQHEEQFDVITSR 116 (181)
T ss_pred CCCeEEEecCCCCccHHHHHHHCCCCeEEEEeCcHHHHHHHHHHHHHhC-----CCCeEEEecchhhccccCCccEEEeh
Confidence 4789999999999999999887788899999999999999988764222 23699999999887556799999987
Q ss_pred CCCCCCCCCCCCcHHHHHHHHhhccCCcEEEEEec
Q 035593 157 LFSKGSLLSELEDPNTWEKLRQCLRKGGRIMVNVG 191 (269)
Q Consensus 157 ~~~~~~~~~~l~~~e~~~~~~~~L~pgG~l~~~~~ 191 (269)
... ...++++.+++.|+|||.+++...
T Consensus 117 ~~~--------~~~~~~~~~~~~LkpgG~lvi~~~ 143 (181)
T TIGR00138 117 ALA--------SLNVLLELTLNLLKVGGYFLAYKG 143 (181)
T ss_pred hhh--------CHHHHHHHHHHhcCCCCEEEEEcC
Confidence 521 135789999999999999998753
No 22
>PF13659 Methyltransf_26: Methyltransferase domain; PDB: 3GJY_A 3LPM_B 2NP6_D 1AQI_B 2ADM_B 2IH2_A 2JG3_A 2IBS_D 2NP7_A 2IBT_A ....
Probab=99.56 E-value=2.8e-14 Score=108.96 Aligned_cols=108 Identities=20% Similarity=0.184 Sum_probs=85.2
Q ss_pred CcEEEEcCcccHHHHHHHHHCCCceEEEEECChHHHHHHHHhcCccccccCCCCcEEEEEcccccc---ccCCCeeEEEE
Q 035593 79 GPIGILGFGAGSAARLILDLYPEAVIHGWELDPSVIKVAREFFALEKLEKSYPDRLFVYVGNALKA---SLKDGFSGILV 155 (269)
Q Consensus 79 ~~VL~iG~G~G~~~~~l~~~~p~~~v~~vEidp~~~~~a~~~~~~~~~~~~~~~rv~~~~~D~~~~---~~~~~yD~I~~ 155 (269)
.+|||+|||+|.++..+++.. ..+++++|+||..+++|++++.... ...+++++++|+.+. ...++||+|+.
T Consensus 2 ~~vlD~~~G~G~~~~~~~~~~-~~~~~gvdi~~~~~~~a~~~~~~~~----~~~~~~~~~~D~~~~~~~~~~~~~D~Iv~ 76 (117)
T PF13659_consen 2 DRVLDPGCGSGTFLLAALRRG-AARVTGVDIDPEAVELARRNLPRNG----LDDRVEVIVGDARDLPEPLPDGKFDLIVT 76 (117)
T ss_dssp EEEEEETSTTCHHHHHHHHHC-TCEEEEEESSHHHHHHHHHHCHHCT----TTTTEEEEESHHHHHHHTCTTT-EEEEEE
T ss_pred CEEEEcCcchHHHHHHHHHHC-CCeEEEEEECHHHHHHHHHHHHHcc----CCceEEEEECchhhchhhccCceeEEEEE
Confidence 589999999999999999986 7899999999999999999986443 146899999999887 35789999999
Q ss_pred cCCCCCCCC--C--CCCcHHHHHHHHhhccCCcEEEEEec
Q 035593 156 DLFSKGSLL--S--ELEDPNTWEKLRQCLRKGGRIMVNVG 191 (269)
Q Consensus 156 d~~~~~~~~--~--~l~~~e~~~~~~~~L~pgG~l~~~~~ 191 (269)
|.+-..... . .-...+|++.+.+.|+|||++++.++
T Consensus 77 npP~~~~~~~~~~~~~~~~~~~~~~~~~L~~gG~~~~~~~ 116 (117)
T PF13659_consen 77 NPPYGPRSGDKAALRRLYSRFLEAAARLLKPGGVLVFITP 116 (117)
T ss_dssp --STTSBTT----GGCHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred CCCCccccccchhhHHHHHHHHHHHHHHcCCCeEEEEEeC
Confidence 865442211 1 11236899999999999999988763
No 23
>COG4122 Predicted O-methyltransferase [General function prediction only]
Probab=99.55 E-value=1.9e-13 Score=115.10 Aligned_cols=106 Identities=28% Similarity=0.344 Sum_probs=91.4
Q ss_pred CCCCCcEEEEcCcccHHHHHHHHHCC-CceEEEEECChHHHHHHHHhcCccccccCCCCcEEEEE-cccccc-c--cCCC
Q 035593 75 ILPPGPIGILGFGAGSAARLILDLYP-EAVIHGWELDPSVIKVAREFFALEKLEKSYPDRLFVYV-GNALKA-S--LKDG 149 (269)
Q Consensus 75 l~~~~~VL~iG~G~G~~~~~l~~~~p-~~~v~~vEidp~~~~~a~~~~~~~~~~~~~~~rv~~~~-~D~~~~-~--~~~~ 149 (269)
+..+++||+||.+.|..+.+++...| +.+++++|+||++++.|+++|...+ .+++++++. +|+.+. . ..+.
T Consensus 57 ~~~~k~iLEiGT~~GySal~mA~~l~~~g~l~tiE~~~e~~~~A~~n~~~ag----~~~~i~~~~~gdal~~l~~~~~~~ 132 (219)
T COG4122 57 LSGPKRILEIGTAIGYSALWMALALPDDGRLTTIERDEERAEIARENLAEAG----VDDRIELLLGGDALDVLSRLLDGS 132 (219)
T ss_pred hcCCceEEEeecccCHHHHHHHhhCCCCCeEEEEeCCHHHHHHHHHHHHHcC----CcceEEEEecCcHHHHHHhccCCC
Confidence 34799999999999999999999888 8899999999999999999986443 256799999 599887 3 4689
Q ss_pred eeEEEEcCCCCCCCCCCCCcHHHHHHHHhhccCCcEEEE-Eec
Q 035593 150 FSGILVDLFSKGSLLSELEDPNTWEKLRQCLRKGGRIMV-NVG 191 (269)
Q Consensus 150 yD~I~~d~~~~~~~~~~l~~~e~~~~~~~~L~pgG~l~~-~~~ 191 (269)
||+||+|+.... .++||+.+.+.|+|||++++ |+.
T Consensus 133 fDliFIDadK~~-------yp~~le~~~~lLr~GGliv~DNvl 168 (219)
T COG4122 133 FDLVFIDADKAD-------YPEYLERALPLLRPGGLIVADNVL 168 (219)
T ss_pred ccEEEEeCChhh-------CHHHHHHHHHHhCCCcEEEEeecc
Confidence 999999987654 57999999999999999998 443
No 24
>PRK00121 trmB tRNA (guanine-N(7)-)-methyltransferase; Reviewed
Probab=99.54 E-value=1.7e-13 Score=115.21 Aligned_cols=110 Identities=17% Similarity=0.147 Sum_probs=86.6
Q ss_pred CCCcEEEEcCcccHHHHHHHHHCCCceEEEEECChHHHHHHHHhcCccccccCCCCcEEEEEccc-ccc---ccCCCeeE
Q 035593 77 PPGPIGILGFGAGSAARLILDLYPEAVIHGWELDPSVIKVAREFFALEKLEKSYPDRLFVYVGNA-LKA---SLKDGFSG 152 (269)
Q Consensus 77 ~~~~VL~iG~G~G~~~~~l~~~~p~~~v~~vEidp~~~~~a~~~~~~~~~~~~~~~rv~~~~~D~-~~~---~~~~~yD~ 152 (269)
+..+|||||||+|..+..+++.+|+.+|++||+++.+++.|++++.... -++++++++|+ ..+ ..++.||+
T Consensus 40 ~~~~VLDiGcGtG~~~~~la~~~p~~~v~gVD~s~~~i~~a~~~~~~~~-----~~~v~~~~~d~~~~l~~~~~~~~~D~ 114 (202)
T PRK00121 40 DAPIHLEIGFGKGEFLVEMAKANPDINFIGIEVHEPGVGKALKKIEEEG-----LTNLRLLCGDAVEVLLDMFPDGSLDR 114 (202)
T ss_pred CCCeEEEEccCCCHHHHHHHHHCCCccEEEEEechHHHHHHHHHHHHcC-----CCCEEEEecCHHHHHHHHcCccccce
Confidence 4678999999999999999988888899999999999999998874322 25799999999 544 24568999
Q ss_pred EEEcCCCCCCCC-C---CCCcHHHHHHHHhhccCCcEEEEEec
Q 035593 153 ILVDLFSKGSLL-S---ELEDPNTWEKLRQCLRKGGRIMVNVG 191 (269)
Q Consensus 153 I~~d~~~~~~~~-~---~l~~~e~~~~~~~~L~pgG~l~~~~~ 191 (269)
|++....+.... . ......+++.+.+.|+|||++++...
T Consensus 115 V~~~~~~p~~~~~~~~~~~~~~~~l~~i~~~LkpgG~l~i~~~ 157 (202)
T PRK00121 115 IYLNFPDPWPKKRHHKRRLVQPEFLALYARKLKPGGEIHFATD 157 (202)
T ss_pred EEEECCCCCCCccccccccCCHHHHHHHHHHcCCCCEEEEEcC
Confidence 998643332111 1 12357899999999999999998663
No 25
>PRK14103 trans-aconitate 2-methyltransferase; Provisional
Probab=99.53 E-value=8.8e-14 Score=120.99 Aligned_cols=102 Identities=22% Similarity=0.248 Sum_probs=84.0
Q ss_pred CCCCCcEEEEcCcccHHHHHHHHHCCCceEEEEECChHHHHHHHHhcCccccccCCCCcEEEEEccccccccCCCeeEEE
Q 035593 75 ILPPGPIGILGFGAGSAARLILDLYPEAVIHGWELDPSVIKVAREFFALEKLEKSYPDRLFVYVGNALKASLKDGFSGIL 154 (269)
Q Consensus 75 l~~~~~VL~iG~G~G~~~~~l~~~~p~~~v~~vEidp~~~~~a~~~~~~~~~~~~~~~rv~~~~~D~~~~~~~~~yD~I~ 154 (269)
..++.+|||||||+|.++..+++.+|+.+|+++|+++.|++.|++. +++++++|+.++...++||+|+
T Consensus 27 ~~~~~~vLDlGcG~G~~~~~l~~~~p~~~v~gvD~s~~~~~~a~~~------------~~~~~~~d~~~~~~~~~fD~v~ 94 (255)
T PRK14103 27 AERARRVVDLGCGPGNLTRYLARRWPGAVIEALDSSPEMVAAARER------------GVDARTGDVRDWKPKPDTDVVV 94 (255)
T ss_pred CCCCCEEEEEcCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHhc------------CCcEEEcChhhCCCCCCceEEE
Confidence 4567899999999999999999988889999999999999999763 3678899998775557899999
Q ss_pred EcCCCCCCCCCCCCcHHHHHHHHhhccCCcEEEEEecC
Q 035593 155 VDLFSKGSLLSELEDPNTWEKLRQCLRKGGRIMVNVGG 192 (269)
Q Consensus 155 ~d~~~~~~~~~~l~~~e~~~~~~~~L~pgG~l~~~~~~ 192 (269)
+...-+ ..+ ....++++++++|||||.+++.+++
T Consensus 95 ~~~~l~-~~~---d~~~~l~~~~~~LkpgG~l~~~~~~ 128 (255)
T PRK14103 95 SNAALQ-WVP---EHADLLVRWVDELAPGSWIAVQVPG 128 (255)
T ss_pred Eehhhh-hCC---CHHHHHHHHHHhCCCCcEEEEEcCC
Confidence 864322 111 2368999999999999999987654
No 26
>PF01209 Ubie_methyltran: ubiE/COQ5 methyltransferase family; InterPro: IPR004033 A number of methyltransferases have been shown to share regions of similarities []. Apart from the ubiquinone/menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the ubiE gene of Escherichia coli), the ubiquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the COQ5 gene of Saccharomyces cerevisiae) and the menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the MENH gene of Bacillus subtilis), this family also includes methyltransferases involved in biotin and sterol biosynthesis and in phosphatidylethanolamine methylation.; GO: 0008168 methyltransferase activity; PDB: 1VL5_C.
Probab=99.53 E-value=4.1e-14 Score=121.33 Aligned_cols=110 Identities=17% Similarity=0.281 Sum_probs=77.5
Q ss_pred CCCCCcEEEEcCcccHHHHHHHHHC-CCceEEEEECChHHHHHHHHhcCccccccCCCCcEEEEEcccccc-ccCCCeeE
Q 035593 75 ILPPGPIGILGFGAGSAARLILDLY-PEAVIHGWELDPSVIKVAREFFALEKLEKSYPDRLFVYVGNALKA-SLKDGFSG 152 (269)
Q Consensus 75 l~~~~~VL~iG~G~G~~~~~l~~~~-p~~~v~~vEidp~~~~~a~~~~~~~~~~~~~~~rv~~~~~D~~~~-~~~~~yD~ 152 (269)
..++.+|||+|||+|.++..++++. |+.+|+++|+++.|++.|+++..... ..+++++++|+.+. ..+++||+
T Consensus 45 ~~~g~~vLDv~~GtG~~~~~l~~~~~~~~~v~~vD~s~~ML~~a~~k~~~~~-----~~~i~~v~~da~~lp~~d~sfD~ 119 (233)
T PF01209_consen 45 LRPGDRVLDVACGTGDVTRELARRVGPNGKVVGVDISPGMLEVARKKLKREG-----LQNIEFVQGDAEDLPFPDNSFDA 119 (233)
T ss_dssp --S--EEEEET-TTSHHHHHHGGGSS---EEEEEES-HHHHHHHHHHHHHTT-------SEEEEE-BTTB--S-TT-EEE
T ss_pred CCCCCEEEEeCCChHHHHHHHHHHCCCccEEEEecCCHHHHHHHHHHHHhhC-----CCCeeEEEcCHHHhcCCCCceeE
Confidence 4568899999999999999998875 47899999999999999999874322 24899999999998 66789999
Q ss_pred EEEcCCCCCCCCCCCCcHHHHHHHHhhccCCcEEEEEecCC
Q 035593 153 ILVDLFSKGSLLSELEDPNTWEKLRQCLRKGGRIMVNVGGS 193 (269)
Q Consensus 153 I~~d~~~~~~~~~~l~~~e~~~~~~~~L~pgG~l~~~~~~~ 193 (269)
|++... ..........+++++++|||||.+++--++.
T Consensus 120 v~~~fg----lrn~~d~~~~l~E~~RVLkPGG~l~ile~~~ 156 (233)
T PF01209_consen 120 VTCSFG----LRNFPDRERALREMYRVLKPGGRLVILEFSK 156 (233)
T ss_dssp EEEES-----GGG-SSHHHHHHHHHHHEEEEEEEEEEEEEB
T ss_pred EEHHhh----HHhhCCHHHHHHHHHHHcCCCeEEEEeeccC
Confidence 997421 1111124689999999999999998766554
No 27
>PRK15001 SAM-dependent 23S ribosomal RNA mG1835 methyltransferase; Provisional
Probab=99.53 E-value=2.9e-13 Score=123.28 Aligned_cols=131 Identities=21% Similarity=0.269 Sum_probs=96.3
Q ss_pred CCcEEEEcCcccHHHHHHHHHCCCceEEEEECChHHHHHHHHhcCccccccCCCCcEEEEEccccccccCCCeeEEEEcC
Q 035593 78 PGPIGILGFGAGSAARLILDLYPEAVIHGWELDPSVIKVAREFFALEKLEKSYPDRLFVYVGNALKASLKDGFSGILVDL 157 (269)
Q Consensus 78 ~~~VL~iG~G~G~~~~~l~~~~p~~~v~~vEidp~~~~~a~~~~~~~~~~~~~~~rv~~~~~D~~~~~~~~~yD~I~~d~ 157 (269)
..+|||||||+|.++..+++++|..+|++||+|+.+++.|++++..+... ...+++++.+|+.......+||+|+++.
T Consensus 229 ~~~VLDLGCGtGvi~i~la~~~P~~~V~~vD~S~~Av~~A~~N~~~n~~~--~~~~v~~~~~D~l~~~~~~~fDlIlsNP 306 (378)
T PRK15001 229 EGEIVDLGCGNGVIGLTLLDKNPQAKVVFVDESPMAVASSRLNVETNMPE--ALDRCEFMINNALSGVEPFRFNAVLCNP 306 (378)
T ss_pred CCeEEEEeccccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCcc--cCceEEEEEccccccCCCCCEEEEEECc
Confidence 46999999999999999999999999999999999999999987433100 0247899999987654456899999985
Q ss_pred CCCCCC-CCCCCcHHHHHHHHhhccCCcEEEEEecCCCccccccccchhHHHHHHHHHHHHHhcCceEEE
Q 035593 158 FSKGSL-LSELEDPNTWEKLRQCLRKGGRIMVNVGGSCVEAEDSRRDGKVVMEATLKAMHKVFGKKLYVL 226 (269)
Q Consensus 158 ~~~~~~-~~~l~~~e~~~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~F~~~v~~~ 226 (269)
+-+... ...-...++|+.++++|+|||.+.+-.... ......|++.|++ +..+
T Consensus 307 Pfh~~~~~~~~ia~~l~~~a~~~LkpGG~L~iV~nr~---------------l~y~~~L~~~fg~-~~~v 360 (378)
T PRK15001 307 PFHQQHALTDNVAWEMFHHARRCLKINGELYIVANRH---------------LDYFHKLKKIFGN-CTTI 360 (378)
T ss_pred CcccCccCCHHHHHHHHHHHHHhcccCCEEEEEEecC---------------cCHHHHHHHHcCC-ceEE
Confidence 433211 111113579999999999999988865322 1234668889974 4443
No 28
>PF13847 Methyltransf_31: Methyltransferase domain; PDB: 3T0I_B 3SVZ_B 3SXJ_A 3F4K_A 3GU3_B 2GH1_A 1R8Y_E 1R8X_B 2B3T_A 1T43_A ....
Probab=99.53 E-value=6e-14 Score=112.51 Aligned_cols=106 Identities=18% Similarity=0.226 Sum_probs=84.7
Q ss_pred CCCcEEEEcCcccHHHHHHH-HHCCCceEEEEECChHHHHHHHHhcCccccccCCCCcEEEEEcccccccc--CCCeeEE
Q 035593 77 PPGPIGILGFGAGSAARLIL-DLYPEAVIHGWELDPSVIKVAREFFALEKLEKSYPDRLFVYVGNALKASL--KDGFSGI 153 (269)
Q Consensus 77 ~~~~VL~iG~G~G~~~~~l~-~~~p~~~v~~vEidp~~~~~a~~~~~~~~~~~~~~~rv~~~~~D~~~~~~--~~~yD~I 153 (269)
...+|||+|||+|.++..++ +..|+.++++||+++++++.|++.+.... -++++++++|+.++.. .++||+|
T Consensus 3 ~~~~iLDlGcG~G~~~~~l~~~~~~~~~i~gvD~s~~~i~~a~~~~~~~~-----~~ni~~~~~d~~~l~~~~~~~~D~I 77 (152)
T PF13847_consen 3 SNKKILDLGCGTGRLLIQLAKELNPGAKIIGVDISEEMIEYAKKRAKELG-----LDNIEFIQGDIEDLPQELEEKFDII 77 (152)
T ss_dssp TTSEEEEET-TTSHHHHHHHHHSTTTSEEEEEESSHHHHHHHHHHHHHTT-----STTEEEEESBTTCGCGCSSTTEEEE
T ss_pred CCCEEEEecCcCcHHHHHHHHhcCCCCEEEEEECcHHHHHHhhccccccc-----ccccceEEeehhccccccCCCeeEE
Confidence 46799999999999999999 45678999999999999999999764221 2479999999999742 2799999
Q ss_pred EEcCCCCCCCCCCCC-cHHHHHHHHhhccCCcEEEEEecC
Q 035593 154 LVDLFSKGSLLSELE-DPNTWEKLRQCLRKGGRIMVNVGG 192 (269)
Q Consensus 154 ~~d~~~~~~~~~~l~-~~e~~~~~~~~L~pgG~l~~~~~~ 192 (269)
++.... .++. ...+++.+.+.|+++|++++....
T Consensus 78 ~~~~~l-----~~~~~~~~~l~~~~~~lk~~G~~i~~~~~ 112 (152)
T PF13847_consen 78 ISNGVL-----HHFPDPEKVLKNIIRLLKPGGILIISDPN 112 (152)
T ss_dssp EEESTG-----GGTSHHHHHHHHHHHHEEEEEEEEEEEEE
T ss_pred EEcCch-----hhccCHHHHHHHHHHHcCCCcEEEEEECC
Confidence 987432 1222 247999999999999999987754
No 29
>TIGR00091 tRNA (guanine-N(7)-)-methyltransferase. In E. coli, this protein flanks the DNA repair protein MutY, also called micA.
Probab=99.53 E-value=2.4e-13 Score=113.57 Aligned_cols=110 Identities=16% Similarity=0.186 Sum_probs=88.4
Q ss_pred CCCcEEEEcCcccHHHHHHHHHCCCceEEEEECChHHHHHHHHhcCccccccCCCCcEEEEEcccccc----ccCCCeeE
Q 035593 77 PPGPIGILGFGAGSAARLILDLYPEAVIHGWELDPSVIKVAREFFALEKLEKSYPDRLFVYVGNALKA----SLKDGFSG 152 (269)
Q Consensus 77 ~~~~VL~iG~G~G~~~~~l~~~~p~~~v~~vEidp~~~~~a~~~~~~~~~~~~~~~rv~~~~~D~~~~----~~~~~yD~ 152 (269)
...+|||||||+|.++..+++.+|+.++++||+++.+++.|+++..... -.+++++.+|+.++ ...+.+|.
T Consensus 16 ~~~~ilDiGcG~G~~~~~la~~~p~~~v~gvD~~~~~l~~a~~~~~~~~-----l~ni~~i~~d~~~~~~~~~~~~~~d~ 90 (194)
T TIGR00091 16 KAPLHLEIGCGKGRFLIDMAKQNPDKNFLGIEIHTPIVLAANNKANKLG-----LKNLHVLCGDANELLDKFFPDGSLSK 90 (194)
T ss_pred CCceEEEeCCCccHHHHHHHHhCCCCCEEEEEeeHHHHHHHHHHHHHhC-----CCCEEEEccCHHHHHHhhCCCCceeE
Confidence 4568999999999999999999999999999999999999988764322 24799999999875 23458999
Q ss_pred EEEcCCCCCCCC----CCCCcHHHHHHHHhhccCCcEEEEEec
Q 035593 153 ILVDLFSKGSLL----SELEDPNTWEKLRQCLRKGGRIMVNVG 191 (269)
Q Consensus 153 I~~d~~~~~~~~----~~l~~~e~~~~~~~~L~pgG~l~~~~~ 191 (269)
|+++..++..-. ..+...++++.+++.|+|||.+.+...
T Consensus 91 v~~~~pdpw~k~~h~~~r~~~~~~l~~~~r~LkpgG~l~~~td 133 (194)
T TIGR00091 91 VFLNFPDPWPKKRHNKRRITQPHFLKEYANVLKKGGVIHFKTD 133 (194)
T ss_pred EEEECCCcCCCCCccccccCCHHHHHHHHHHhCCCCEEEEEeC
Confidence 999865543111 124457899999999999999988764
No 30
>PF08241 Methyltransf_11: Methyltransferase domain; InterPro: IPR013216 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Arsenite methyltransferase (2.1.1.137 from EC) which converts arsenical compounds to their methylated forms [] Biotin synthesis protein bioC, which is involved in the early stages of biotin biosyntheis [] Arginine N-methyltransferase 1, an arginine-methylating enzyme which acts on residues present in a glycine and argine-rich domain and can methylate histones [] Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Sterol 24-C-methyltransferase (2.1.1.41 from EC), shown to participate in ergosterol biosynthesis [] 3-demethylubiquinone-9 3-methyltransferase (2.1.1.64 from EC) involved in ubiquinone biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ]. ; GO: 0008168 methyltransferase activity, 0008152 metabolic process; PDB: 3CGG_B 3CCF_B 3BKW_B 2PXX_A 3I9F_A 2YQZ_B 2YR0_A 3BUS_A 3EGE_A 3G5L_B ....
Probab=99.53 E-value=6e-14 Score=102.41 Aligned_cols=93 Identities=17% Similarity=0.309 Sum_probs=75.0
Q ss_pred EEEcCcccHHHHHHHHHCCCceEEEEECChHHHHHHHHhcCccccccCCCCcEEEEEcccccc-ccCCCeeEEEEcCCCC
Q 035593 82 GILGFGAGSAARLILDLYPEAVIHGWELDPSVIKVAREFFALEKLEKSYPDRLFVYVGNALKA-SLKDGFSGILVDLFSK 160 (269)
Q Consensus 82 L~iG~G~G~~~~~l~~~~p~~~v~~vEidp~~~~~a~~~~~~~~~~~~~~~rv~~~~~D~~~~-~~~~~yD~I~~d~~~~ 160 (269)
||+|||+|..+..++++ ++.+++++|+++++++.+++... ..++.++.+|+.++ ..++.||+|++...-.
T Consensus 1 LdiG~G~G~~~~~l~~~-~~~~v~~~D~~~~~~~~~~~~~~--------~~~~~~~~~d~~~l~~~~~sfD~v~~~~~~~ 71 (95)
T PF08241_consen 1 LDIGCGTGRFAAALAKR-GGASVTGIDISEEMLEQARKRLK--------NEGVSFRQGDAEDLPFPDNSFDVVFSNSVLH 71 (95)
T ss_dssp EEET-TTSHHHHHHHHT-TTCEEEEEES-HHHHHHHHHHTT--------TSTEEEEESBTTSSSS-TT-EEEEEEESHGG
T ss_pred CEecCcCCHHHHHHHhc-cCCEEEEEeCCHHHHHHHHhccc--------ccCchheeehHHhCcccccccccccccccee
Confidence 89999999999999996 78999999999999999999875 24577999999998 6778999999753211
Q ss_pred CCCCCCC-CcHHHHHHHHhhccCCcEEEE
Q 035593 161 GSLLSEL-EDPNTWEKLRQCLRKGGRIMV 188 (269)
Q Consensus 161 ~~~~~~l-~~~e~~~~~~~~L~pgG~l~~ 188 (269)
++ ....+++++++.|||||.+++
T Consensus 72 -----~~~~~~~~l~e~~rvLk~gG~l~~ 95 (95)
T PF08241_consen 72 -----HLEDPEAALREIYRVLKPGGRLVI 95 (95)
T ss_dssp -----GSSHHHHHHHHHHHHEEEEEEEEE
T ss_pred -----eccCHHHHHHHHHHHcCcCeEEeC
Confidence 22 246899999999999999985
No 31
>TIGR03533 L3_gln_methyl protein-(glutamine-N5) methyltransferase, ribosomal protein L3-specific. Members of this protein family methylate ribosomal protein L3 on a glutamine side chain. This family is related to HemK, a protein-glutamine methyltranferase for peptide chain release factors.
Probab=99.51 E-value=5.3e-13 Score=117.85 Aligned_cols=112 Identities=21% Similarity=0.229 Sum_probs=86.5
Q ss_pred CCCcEEEEcCcccHHHHHHHHHCCCceEEEEECChHHHHHHHHhcCccccccCCCCcEEEEEccccccccCCCeeEEEEc
Q 035593 77 PPGPIGILGFGAGSAARLILDLYPEAVIHGWELDPSVIKVAREFFALEKLEKSYPDRLFVYVGNALKASLKDGFSGILVD 156 (269)
Q Consensus 77 ~~~~VL~iG~G~G~~~~~l~~~~p~~~v~~vEidp~~~~~a~~~~~~~~~~~~~~~rv~~~~~D~~~~~~~~~yD~I~~d 156 (269)
++.+|||+|||+|.++..++++.|+.+|+++|+|+.+++.|++++.... ...+++++.+|+.+....++||+|++|
T Consensus 121 ~~~~vLDlG~GsG~i~~~la~~~~~~~v~avDis~~al~~A~~n~~~~~----~~~~i~~~~~D~~~~~~~~~fD~Iv~N 196 (284)
T TIGR03533 121 PVKRILDLCTGSGCIAIACAYAFPEAEVDAVDISPDALAVAEINIERHG----LEDRVTLIQSDLFAALPGRKYDLIVSN 196 (284)
T ss_pred CCCEEEEEeCchhHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcC----CCCcEEEEECchhhccCCCCccEEEEC
Confidence 4678999999999999999998889999999999999999999875332 135799999998765444589999998
Q ss_pred CCCCCC-----CCC------C--C--------CcHHHHHHHHhhccCCcEEEEEecC
Q 035593 157 LFSKGS-----LLS------E--L--------EDPNTWEKLRQCLRKGGRIMVNVGG 192 (269)
Q Consensus 157 ~~~~~~-----~~~------~--l--------~~~e~~~~~~~~L~pgG~l~~~~~~ 192 (269)
.+-... .++ + + ....+++.+.+.|+|||.+++.+..
T Consensus 197 PPy~~~~~~~~l~~~~~~ep~~al~gg~dGl~~~~~il~~a~~~L~~gG~l~~e~g~ 253 (284)
T TIGR03533 197 PPYVDAEDMADLPAEYHHEPELALASGEDGLDLVRRILAEAADHLNENGVLVVEVGN 253 (284)
T ss_pred CCCCCccchhhCCHhhhcCHHHHhcCCCcHHHHHHHHHHHHHHhcCCCCEEEEEECc
Confidence 532110 000 0 0 1246788889999999999998853
No 32
>PRK01683 trans-aconitate 2-methyltransferase; Provisional
Probab=99.51 E-value=3e-13 Score=117.68 Aligned_cols=104 Identities=20% Similarity=0.307 Sum_probs=86.0
Q ss_pred CCCCCCcEEEEcCcccHHHHHHHHHCCCceEEEEECChHHHHHHHHhcCccccccCCCCcEEEEEccccccccCCCeeEE
Q 035593 74 PILPPGPIGILGFGAGSAARLILDLYPEAVIHGWELDPSVIKVAREFFALEKLEKSYPDRLFVYVGNALKASLKDGFSGI 153 (269)
Q Consensus 74 ~l~~~~~VL~iG~G~G~~~~~l~~~~p~~~v~~vEidp~~~~~a~~~~~~~~~~~~~~~rv~~~~~D~~~~~~~~~yD~I 153 (269)
.+.++.+|||||||+|.++..+++.+|+.+|+++|+++.+++.|++++ ++++++.+|+.++....+||+|
T Consensus 28 ~~~~~~~vLDiGcG~G~~~~~la~~~~~~~v~gvD~s~~~i~~a~~~~----------~~~~~~~~d~~~~~~~~~fD~v 97 (258)
T PRK01683 28 PLENPRYVVDLGCGPGNSTELLVERWPAARITGIDSSPAMLAEARSRL----------PDCQFVEADIASWQPPQALDLI 97 (258)
T ss_pred CCcCCCEEEEEcccCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHhC----------CCCeEEECchhccCCCCCccEE
Confidence 345678999999999999999999888899999999999999999874 2578999999877555699999
Q ss_pred EEcCCCCCCCCCCCCcHHHHHHHHhhccCCcEEEEEec
Q 035593 154 LVDLFSKGSLLSELEDPNTWEKLRQCLRKGGRIMVNVG 191 (269)
Q Consensus 154 ~~d~~~~~~~~~~l~~~e~~~~~~~~L~pgG~l~~~~~ 191 (269)
++...-+ ... ....+++++.+.|+|||.+++.+.
T Consensus 98 ~~~~~l~-~~~---d~~~~l~~~~~~LkpgG~~~~~~~ 131 (258)
T PRK01683 98 FANASLQ-WLP---DHLELFPRLVSLLAPGGVLAVQMP 131 (258)
T ss_pred EEccChh-hCC---CHHHHHHHHHHhcCCCcEEEEECC
Confidence 9864322 111 246899999999999999999764
No 33
>PF01596 Methyltransf_3: O-methyltransferase; InterPro: IPR002935 Members of this family are O-methyltransferases. The family includes also bacterial O-methyltransferases that may be involved in antibiotic production [].; GO: 0008171 O-methyltransferase activity; PDB: 1SUI_C 1SUS_D 3CBG_A 2GPY_B 3TR6_A 2AVD_A 3DUL_B 3DUW_B 2ZTH_A 1VID_A ....
Probab=99.51 E-value=5e-14 Score=118.31 Aligned_cols=103 Identities=28% Similarity=0.382 Sum_probs=85.9
Q ss_pred CCCCcEEEEcCcccHHHHHHHHHCC-CceEEEEECChHHHHHHHHhcCccccccCCCCcEEEEEcccccc----c-c--C
Q 035593 76 LPPGPIGILGFGAGSAARLILDLYP-EAVIHGWELDPSVIKVAREFFALEKLEKSYPDRLFVYVGNALKA----S-L--K 147 (269)
Q Consensus 76 ~~~~~VL~iG~G~G~~~~~l~~~~p-~~~v~~vEidp~~~~~a~~~~~~~~~~~~~~~rv~~~~~D~~~~----~-~--~ 147 (269)
..+++||+||+++|..+.++++..| +.+|+++|+||+..+.|+++|...++ ..+++++.+|+.++ . . .
T Consensus 44 ~~~k~vLEIGt~~GySal~la~~l~~~g~i~tiE~~~~~~~~A~~~~~~ag~----~~~I~~~~gda~~~l~~l~~~~~~ 119 (205)
T PF01596_consen 44 TRPKRVLEIGTFTGYSALWLAEALPEDGKITTIEIDPERAEIARENFRKAGL----DDRIEVIEGDALEVLPELANDGEE 119 (205)
T ss_dssp HT-SEEEEESTTTSHHHHHHHHTSTTTSEEEEEESSHHHHHHHHHHHHHTTG----GGGEEEEES-HHHHHHHHHHTTTT
T ss_pred cCCceEEEeccccccHHHHHHHhhcccceEEEecCcHHHHHHHHHHHHhcCC----CCcEEEEEeccHhhHHHHHhccCC
Confidence 4789999999999999999998777 68999999999999999999854332 36899999999986 1 1 3
Q ss_pred CCeeEEEEcCCCCCCCCCCCCcHHHHHHHHhhccCCcEEEEE
Q 035593 148 DGFSGILVDLFSKGSLLSELEDPNTWEKLRQCLRKGGRIMVN 189 (269)
Q Consensus 148 ~~yD~I~~d~~~~~~~~~~l~~~e~~~~~~~~L~pgG~l~~~ 189 (269)
++||+||+|+.... ..++|+.+.+.|+|||++++.
T Consensus 120 ~~fD~VFiDa~K~~-------y~~y~~~~~~ll~~ggvii~D 154 (205)
T PF01596_consen 120 GQFDFVFIDADKRN-------YLEYFEKALPLLRPGGVIIAD 154 (205)
T ss_dssp TSEEEEEEESTGGG-------HHHHHHHHHHHEEEEEEEEEE
T ss_pred CceeEEEEcccccc-------hhhHHHHHhhhccCCeEEEEc
Confidence 58999999986432 468999999999999999985
No 34
>PRK08287 cobalt-precorrin-6Y C(15)-methyltransferase; Validated
Probab=99.51 E-value=4.8e-13 Score=110.96 Aligned_cols=106 Identities=15% Similarity=0.118 Sum_probs=84.8
Q ss_pred CCCCCCcEEEEcCcccHHHHHHHHHCCCceEEEEECChHHHHHHHHhcCccccccCCCCcEEEEEccccccccCCCeeEE
Q 035593 74 PILPPGPIGILGFGAGSAARLILDLYPEAVIHGWELDPSVIKVAREFFALEKLEKSYPDRLFVYVGNALKASLKDGFSGI 153 (269)
Q Consensus 74 ~l~~~~~VL~iG~G~G~~~~~l~~~~p~~~v~~vEidp~~~~~a~~~~~~~~~~~~~~~rv~~~~~D~~~~~~~~~yD~I 153 (269)
.+.+..+|||||||+|.++..+++.+|+.+|+++|+++.+++.|++++.... -.+++++.+|+... ..++||+|
T Consensus 28 ~~~~~~~vLDiG~G~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~n~~~~~-----~~~i~~~~~d~~~~-~~~~~D~v 101 (187)
T PRK08287 28 ELHRAKHLIDVGAGTGSVSIEAALQFPSLQVTAIERNPDALRLIKENRQRFG-----CGNIDIIPGEAPIE-LPGKADAI 101 (187)
T ss_pred CCCCCCEEEEECCcCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHhC-----CCCeEEEecCchhh-cCcCCCEE
Confidence 3457889999999999999999998888999999999999999998764322 24689999997532 24589999
Q ss_pred EEcCCCCCCCCCCCCcHHHHHHHHhhccCCcEEEEEecC
Q 035593 154 LVDLFSKGSLLSELEDPNTWEKLRQCLRKGGRIMVNVGG 192 (269)
Q Consensus 154 ~~d~~~~~~~~~~l~~~e~~~~~~~~L~pgG~l~~~~~~ 192 (269)
+++.... ...++++.+.+.|+|||.++++...
T Consensus 102 ~~~~~~~-------~~~~~l~~~~~~Lk~gG~lv~~~~~ 133 (187)
T PRK08287 102 FIGGSGG-------NLTAIIDWSLAHLHPGGRLVLTFIL 133 (187)
T ss_pred EECCCcc-------CHHHHHHHHHHhcCCCeEEEEEEec
Confidence 9864211 1367999999999999999987643
No 35
>PLN02233 ubiquinone biosynthesis methyltransferase
Probab=99.50 E-value=1.1e-12 Score=114.40 Aligned_cols=113 Identities=15% Similarity=0.129 Sum_probs=87.1
Q ss_pred CCCCCcEEEEcCcccHHHHHHHHHC-CCceEEEEECChHHHHHHHHhcCccccccCCCCcEEEEEcccccc-ccCCCeeE
Q 035593 75 ILPPGPIGILGFGAGSAARLILDLY-PEAVIHGWELDPSVIKVAREFFALEKLEKSYPDRLFVYVGNALKA-SLKDGFSG 152 (269)
Q Consensus 75 l~~~~~VL~iG~G~G~~~~~l~~~~-p~~~v~~vEidp~~~~~a~~~~~~~~~~~~~~~rv~~~~~D~~~~-~~~~~yD~ 152 (269)
+.++.+|||||||+|.++..++++. +..+|+++|++++|++.|+++...... ...++++++++|+.++ ..+++||+
T Consensus 71 ~~~~~~VLDlGcGtG~~~~~la~~~~~~~~V~gvD~S~~ml~~A~~r~~~~~~--~~~~~i~~~~~d~~~lp~~~~sfD~ 148 (261)
T PLN02233 71 AKMGDRVLDLCCGSGDLAFLLSEKVGSDGKVMGLDFSSEQLAVAASRQELKAK--SCYKNIEWIEGDATDLPFDDCYFDA 148 (261)
T ss_pred CCCCCEEEEECCcCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhhhhh--ccCCCeEEEEcccccCCCCCCCEeE
Confidence 4467899999999999999988865 467999999999999999877532100 0135799999999887 55678999
Q ss_pred EEEcCCCCCCCCCCCCcHHHHHHHHhhccCCcEEEEEecCC
Q 035593 153 ILVDLFSKGSLLSELEDPNTWEKLRQCLRKGGRIMVNVGGS 193 (269)
Q Consensus 153 I~~d~~~~~~~~~~l~~~e~~~~~~~~L~pgG~l~~~~~~~ 193 (269)
|++...-+ .. .....++++++++|||||.+++-.+..
T Consensus 149 V~~~~~l~-~~---~d~~~~l~ei~rvLkpGG~l~i~d~~~ 185 (261)
T PLN02233 149 ITMGYGLR-NV---VDRLKAMQEMYRVLKPGSRVSILDFNK 185 (261)
T ss_pred EEEecccc-cC---CCHHHHHHHHHHHcCcCcEEEEEECCC
Confidence 98743211 11 124689999999999999998876654
No 36
>COG2813 RsmC 16S RNA G1207 methylase RsmC [Translation, ribosomal structure and biogenesis]
Probab=99.49 E-value=1.5e-12 Score=113.60 Aligned_cols=129 Identities=17% Similarity=0.203 Sum_probs=97.5
Q ss_pred CCCcEEEEcCcccHHHHHHHHHCCCceEEEEECChHHHHHHHHhcCccccccCCCCcEEEEEccccccccCCCeeEEEEc
Q 035593 77 PPGPIGILGFGAGSAARLILDLYPEAVIHGWELDPSVIKVAREFFALEKLEKSYPDRLFVYVGNALKASLKDGFSGILVD 156 (269)
Q Consensus 77 ~~~~VL~iG~G~G~~~~~l~~~~p~~~v~~vEidp~~~~~a~~~~~~~~~~~~~~~rv~~~~~D~~~~~~~~~yD~I~~d 156 (269)
...+|||+|||.|.++..+++..|..+++.+|+|...++.||++...+. -.+..++..|..+-... +||+|+++
T Consensus 158 ~~~~vlDlGCG~Gvlg~~la~~~p~~~vtmvDvn~~Av~~ar~Nl~~N~-----~~~~~v~~s~~~~~v~~-kfd~IisN 231 (300)
T COG2813 158 LGGKVLDLGCGYGVLGLVLAKKSPQAKLTLVDVNARAVESARKNLAANG-----VENTEVWASNLYEPVEG-KFDLIISN 231 (300)
T ss_pred CCCcEEEeCCCccHHHHHHHHhCCCCeEEEEecCHHHHHHHHHhHHHcC-----CCccEEEEecccccccc-cccEEEeC
Confidence 3559999999999999999999999999999999999999999986553 12337788887665333 99999998
Q ss_pred CCCCCCCCC-CCCcHHHHHHHHhhccCCcEEEEEecCCCccccccccchhHHHHHHHHHHHHHhcCceEEEE
Q 035593 157 LFSKGSLLS-ELEDPNTWEKLRQCLRKGGRIMVNVGGSCVEAEDSRRDGKVVMEATLKAMHKVFGKKLYVLS 227 (269)
Q Consensus 157 ~~~~~~~~~-~l~~~e~~~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~F~~~v~~~~ 227 (269)
.+-+....- +-...++++.++++|++||.|.+-..+.. .....|++.|+ .+..+.
T Consensus 232 PPfh~G~~v~~~~~~~~i~~A~~~L~~gGeL~iVan~~l---------------~y~~~L~~~Fg-~v~~la 287 (300)
T COG2813 232 PPFHAGKAVVHSLAQEIIAAAARHLKPGGELWIVANRHL---------------PYEKKLKELFG-NVEVLA 287 (300)
T ss_pred CCccCCcchhHHHHHHHHHHHHHhhccCCEEEEEEcCCC---------------ChHHHHHHhcC-CEEEEE
Confidence 665533211 22235999999999999997766554321 23456999997 566654
No 37
>TIGR02752 MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone methyltransferase. MenG is a generic term for a methyltransferase that catalyzes the last step in menaquinone biosynthesis; the exact enzymatic activity differs for different MenG because the menaquinone differ in their prenoid side chains in different species. Members of this MenG protein family are 2-heptaprenyl-1,4-naphthoquinone methyltransferase, and are found together in operons with the two subunits of the heptaprenyl diphosphate synthase in Bacillus subtilis and related species.
Probab=99.49 E-value=5e-13 Score=114.32 Aligned_cols=115 Identities=10% Similarity=0.137 Sum_probs=88.2
Q ss_pred HHhcCCCCCCCCcEEEEcCcccHHHHHHHHHC-CCceEEEEECChHHHHHHHHhcCccccccCCCCcEEEEEcccccc-c
Q 035593 68 AFATLPPILPPGPIGILGFGAGSAARLILDLY-PEAVIHGWELDPSVIKVAREFFALEKLEKSYPDRLFVYVGNALKA-S 145 (269)
Q Consensus 68 ~~~~~~~l~~~~~VL~iG~G~G~~~~~l~~~~-p~~~v~~vEidp~~~~~a~~~~~~~~~~~~~~~rv~~~~~D~~~~-~ 145 (269)
.++....+.+..+|||+|||+|..+..+++.. ++.+|+++|+++.+++.|++++.... .++++++.+|+.++ .
T Consensus 36 ~~l~~l~~~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~-----~~~v~~~~~d~~~~~~ 110 (231)
T TIGR02752 36 DTMKRMNVQAGTSALDVCCGTADWSIALAEAVGPEGHVIGLDFSENMLSVGRQKVKDAG-----LHNVELVHGNAMELPF 110 (231)
T ss_pred HHHHhcCCCCCCEEEEeCCCcCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHhcC-----CCceEEEEechhcCCC
Confidence 34333345567899999999999999999875 57899999999999999998864221 35799999999887 4
Q ss_pred cCCCeeEEEEcCCCCCCCCCCCCcHHHHHHHHhhccCCcEEEEEec
Q 035593 146 LKDGFSGILVDLFSKGSLLSELEDPNTWEKLRQCLRKGGRIMVNVG 191 (269)
Q Consensus 146 ~~~~yD~I~~d~~~~~~~~~~l~~~e~~~~~~~~L~pgG~l~~~~~ 191 (269)
..++||+|++...-. ..+ ...++++++.+.|+|||.+++-..
T Consensus 111 ~~~~fD~V~~~~~l~-~~~---~~~~~l~~~~~~Lk~gG~l~~~~~ 152 (231)
T TIGR02752 111 DDNSFDYVTIGFGLR-NVP---DYMQVLREMYRVVKPGGKVVCLET 152 (231)
T ss_pred CCCCccEEEEecccc-cCC---CHHHHHHHHHHHcCcCeEEEEEEC
Confidence 567899999753211 111 235899999999999999987543
No 38
>PLN03075 nicotianamine synthase; Provisional
Probab=99.48 E-value=4.6e-13 Score=117.60 Aligned_cols=150 Identities=16% Similarity=0.245 Sum_probs=100.5
Q ss_pred CCCcEEEEcCcccHHH--HHHHHHCCCceEEEEECChHHHHHHHHhcCc-cccccCCCCcEEEEEcccccc-ccCCCeeE
Q 035593 77 PPGPIGILGFGAGSAA--RLILDLYPEAVIHGWELDPSVIKVAREFFAL-EKLEKSYPDRLFVYVGNALKA-SLKDGFSG 152 (269)
Q Consensus 77 ~~~~VL~iG~G~G~~~--~~l~~~~p~~~v~~vEidp~~~~~a~~~~~~-~~~~~~~~~rv~~~~~D~~~~-~~~~~yD~ 152 (269)
++++|++||||.|.++ ..+++++|+.+++++|+|+++++.||+.+.. .+ -..+++++.+|+.+. ...++||+
T Consensus 123 ~p~~VldIGcGpgpltaiilaa~~~p~~~~~giD~d~~ai~~Ar~~~~~~~g----L~~rV~F~~~Da~~~~~~l~~FDl 198 (296)
T PLN03075 123 VPTKVAFVGSGPLPLTSIVLAKHHLPTTSFHNFDIDPSANDVARRLVSSDPD----LSKRMFFHTADVMDVTESLKEYDV 198 (296)
T ss_pred CCCEEEEECCCCcHHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHhhhccC----ccCCcEEEECchhhcccccCCcCE
Confidence 7899999999977333 3344567899999999999999999999842 22 146899999999987 34578999
Q ss_pred EEEcCCCCCCCCCCCCcHHHHHHHHhhccCCcEEEEEecCCCccccccccchhHHHHHHHHHHHHHhcCceEEE-EcCCC
Q 035593 153 ILVDLFSKGSLLSELEDPNTWEKLRQCLRKGGRIMVNVGGSCVEAEDSRRDGKVVMEATLKAMHKVFGKKLYVL-SLGNR 231 (269)
Q Consensus 153 I~~d~~~~~~~~~~l~~~e~~~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~F~~~v~~~-~~~~~ 231 (269)
|++++.-. . ..-...+.++.++++|+|||++++-.....+ .-+...+....-+-|. ....+ +.++-
T Consensus 199 VF~~ALi~--~-dk~~k~~vL~~l~~~LkPGG~Lvlr~~~G~r---------~~LYp~v~~~~~~gf~-~~~~~~P~~~v 265 (296)
T PLN03075 199 VFLAALVG--M-DKEEKVKVIEHLGKHMAPGALLMLRSAHGAR---------AFLYPVVDPCDLRGFE-VLSVFHPTDEV 265 (296)
T ss_pred EEEecccc--c-ccccHHHHHHHHHHhcCCCcEEEEecccchH---------hhcCCCCChhhCCCeE-EEEEECCCCCc
Confidence 99984211 1 0012479999999999999999997632211 1111111111222563 23333 33444
Q ss_pred CceEEEEecCCC
Q 035593 232 KDDSLIALTGEL 243 (269)
Q Consensus 232 ~n~v~~~~~~~~ 243 (269)
.|.++++-+...
T Consensus 266 ~Nsvi~~r~~~~ 277 (296)
T PLN03075 266 INSVIIARKPGG 277 (296)
T ss_pred eeeEEEEEeecC
Confidence 688888887654
No 39
>COG2242 CobL Precorrin-6B methylase 2 [Coenzyme metabolism]
Probab=99.48 E-value=1.7e-12 Score=105.71 Aligned_cols=118 Identities=19% Similarity=0.105 Sum_probs=94.4
Q ss_pred chHHHHHh-cCCCCCCCCcEEEEcCcccHHHHHHHHHCCCceEEEEECChHHHHHHHHhcCccccccCCCCcEEEEEccc
Q 035593 63 NTYFDAFA-TLPPILPPGPIGILGFGAGSAARLILDLYPEAVIHGWELDPSVIKVAREFFALEKLEKSYPDRLFVYVGNA 141 (269)
Q Consensus 63 ~~y~~~~~-~~~~l~~~~~VL~iG~G~G~~~~~l~~~~p~~~v~~vEidp~~~~~a~~~~~~~~~~~~~~~rv~~~~~D~ 141 (269)
-.=.+.+. +...+.|...++|||||+|+++.+++...|..+|+++|-|++.++..+++...-+ -++++++.+|+
T Consensus 19 K~EIRal~ls~L~~~~g~~l~DIGaGtGsi~iE~a~~~p~~~v~AIe~~~~a~~~~~~N~~~fg-----~~n~~vv~g~A 93 (187)
T COG2242 19 KEEIRALTLSKLRPRPGDRLWDIGAGTGSITIEWALAGPSGRVIAIERDEEALELIERNAARFG-----VDNLEVVEGDA 93 (187)
T ss_pred HHHHHHHHHHhhCCCCCCEEEEeCCCccHHHHHHHHhCCCceEEEEecCHHHHHHHHHHHHHhC-----CCcEEEEeccc
Confidence 33445553 3335668899999999999999999987899999999999999999987753111 36899999999
Q ss_pred ccc-ccCCCeeEEEEcCCCCCCCCCCCCcHHHHHHHHhhccCCcEEEEEecCC
Q 035593 142 LKA-SLKDGFSGILVDLFSKGSLLSELEDPNTWEKLRQCLRKGGRIMVNVGGS 193 (269)
Q Consensus 142 ~~~-~~~~~yD~I~~d~~~~~~~~~~l~~~e~~~~~~~~L~pgG~l~~~~~~~ 193 (269)
-+. ....++|.||+.... ...+.++.+..+|+|||.+++|....
T Consensus 94 p~~L~~~~~~daiFIGGg~--------~i~~ile~~~~~l~~ggrlV~naitl 138 (187)
T COG2242 94 PEALPDLPSPDAIFIGGGG--------NIEEILEAAWERLKPGGRLVANAITL 138 (187)
T ss_pred hHhhcCCCCCCEEEECCCC--------CHHHHHHHHHHHcCcCCeEEEEeecH
Confidence 988 333389999986431 14789999999999999999999653
No 40
>PRK13942 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=99.48 E-value=5.2e-13 Score=113.05 Aligned_cols=108 Identities=19% Similarity=0.226 Sum_probs=83.8
Q ss_pred HhcCCCCCCCCcEEEEcCcccHHHHHHHHHCC-CceEEEEECChHHHHHHHHhcCccccccCCCCcEEEEEcccccc-cc
Q 035593 69 FATLPPILPPGPIGILGFGAGSAARLILDLYP-EAVIHGWELDPSVIKVAREFFALEKLEKSYPDRLFVYVGNALKA-SL 146 (269)
Q Consensus 69 ~~~~~~l~~~~~VL~iG~G~G~~~~~l~~~~p-~~~v~~vEidp~~~~~a~~~~~~~~~~~~~~~rv~~~~~D~~~~-~~ 146 (269)
|.....+.+..+|||||||+|.++..+++..+ +.+|+++|+++++++.|++++.... -.+++++.+|+... ..
T Consensus 68 ~~~~l~~~~g~~VLdIG~GsG~~t~~la~~~~~~~~V~~vE~~~~~~~~a~~~l~~~g-----~~~v~~~~gd~~~~~~~ 142 (212)
T PRK13942 68 MCELLDLKEGMKVLEIGTGSGYHAAVVAEIVGKSGKVVTIERIPELAEKAKKTLKKLG-----YDNVEVIVGDGTLGYEE 142 (212)
T ss_pred HHHHcCCCCcCEEEEECCcccHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcC-----CCCeEEEECCcccCCCc
Confidence 33333456789999999999999999888653 5799999999999999999875322 24799999999875 45
Q ss_pred CCCeeEEEEcCCCCCCCCCCCCcHHHHHHHHhhccCCcEEEEEec
Q 035593 147 KDGFSGILVDLFSKGSLLSELEDPNTWEKLRQCLRKGGRIMVNVG 191 (269)
Q Consensus 147 ~~~yD~I~~d~~~~~~~~~~l~~~e~~~~~~~~L~pgG~l~~~~~ 191 (269)
..+||+|+++.... +..+.+.+.|+|||.+++...
T Consensus 143 ~~~fD~I~~~~~~~----------~~~~~l~~~LkpgG~lvi~~~ 177 (212)
T PRK13942 143 NAPYDRIYVTAAGP----------DIPKPLIEQLKDGGIMVIPVG 177 (212)
T ss_pred CCCcCEEEECCCcc----------cchHHHHHhhCCCcEEEEEEc
Confidence 57899999875321 223466778999999998764
No 41
>PLN02244 tocopherol O-methyltransferase
Probab=99.47 E-value=7.3e-13 Score=119.88 Aligned_cols=107 Identities=21% Similarity=0.274 Sum_probs=85.2
Q ss_pred CCCCcEEEEcCcccHHHHHHHHHCCCceEEEEECChHHHHHHHHhcCccccccCCCCcEEEEEcccccc-ccCCCeeEEE
Q 035593 76 LPPGPIGILGFGAGSAARLILDLYPEAVIHGWELDPSVIKVAREFFALEKLEKSYPDRLFVYVGNALKA-SLKDGFSGIL 154 (269)
Q Consensus 76 ~~~~~VL~iG~G~G~~~~~l~~~~p~~~v~~vEidp~~~~~a~~~~~~~~~~~~~~~rv~~~~~D~~~~-~~~~~yD~I~ 154 (269)
.++.+|||||||+|.++..+++.+ +.+|++||+++.+++.|++...... ..++++++.+|+.+. ...++||+|+
T Consensus 117 ~~~~~VLDiGCG~G~~~~~La~~~-g~~v~gvD~s~~~i~~a~~~~~~~g----~~~~v~~~~~D~~~~~~~~~~FD~V~ 191 (340)
T PLN02244 117 KRPKRIVDVGCGIGGSSRYLARKY-GANVKGITLSPVQAARANALAAAQG----LSDKVSFQVADALNQPFEDGQFDLVW 191 (340)
T ss_pred CCCCeEEEecCCCCHHHHHHHHhc-CCEEEEEECCHHHHHHHHHHHHhcC----CCCceEEEEcCcccCCCCCCCccEEE
Confidence 457899999999999999999876 7899999999999999998764322 135799999999887 5567999999
Q ss_pred EcCCCCCCCCCCCCcHHHHHHHHhhccCCcEEEEEec
Q 035593 155 VDLFSKGSLLSELEDPNTWEKLRQCLRKGGRIMVNVG 191 (269)
Q Consensus 155 ~d~~~~~~~~~~l~~~e~~~~~~~~L~pgG~l~~~~~ 191 (269)
+..... .. .....+++++++.|||||.+++..+
T Consensus 192 s~~~~~-h~---~d~~~~l~e~~rvLkpGG~lvi~~~ 224 (340)
T PLN02244 192 SMESGE-HM---PDKRKFVQELARVAAPGGRIIIVTW 224 (340)
T ss_pred ECCchh-cc---CCHHHHHHHHHHHcCCCcEEEEEEe
Confidence 742111 11 1246899999999999999988654
No 42
>PRK13944 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=99.47 E-value=8.2e-13 Score=111.27 Aligned_cols=104 Identities=19% Similarity=0.196 Sum_probs=81.7
Q ss_pred CCCCCCcEEEEcCcccHHHHHHHHHCC-CceEEEEECChHHHHHHHHhcCccccccCCCCcEEEEEcccccc-ccCCCee
Q 035593 74 PILPPGPIGILGFGAGSAARLILDLYP-EAVIHGWELDPSVIKVAREFFALEKLEKSYPDRLFVYVGNALKA-SLKDGFS 151 (269)
Q Consensus 74 ~l~~~~~VL~iG~G~G~~~~~l~~~~p-~~~v~~vEidp~~~~~a~~~~~~~~~~~~~~~rv~~~~~D~~~~-~~~~~yD 151 (269)
.+.+..+|||||||+|..+..+++..+ ..+|+++|+++++++.|++++.... ...+++++.+|+.+. ....+||
T Consensus 69 ~~~~~~~VLDiG~GsG~~~~~la~~~~~~g~V~~iD~~~~~~~~a~~~l~~~~----~~~~v~~~~~d~~~~~~~~~~fD 144 (205)
T PRK13944 69 EPRPGMKILEVGTGSGYQAAVCAEAIERRGKVYTVEIVKELAIYAAQNIERLG----YWGVVEVYHGDGKRGLEKHAPFD 144 (205)
T ss_pred CCCCCCEEEEECcCccHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcC----CCCcEEEEECCcccCCccCCCcc
Confidence 345678999999999999999988764 5699999999999999998874322 124699999999875 4456899
Q ss_pred EEEEcCCCCCCCCCCCCcHHHHHHHHhhccCCcEEEEEec
Q 035593 152 GILVDLFSKGSLLSELEDPNTWEKLRQCLRKGGRIMVNVG 191 (269)
Q Consensus 152 ~I~~d~~~~~~~~~~l~~~e~~~~~~~~L~pgG~l~~~~~ 191 (269)
+|+++.... .+.+.+.+.|+|||++++...
T Consensus 145 ~Ii~~~~~~----------~~~~~l~~~L~~gG~lvi~~~ 174 (205)
T PRK13944 145 AIIVTAAAS----------TIPSALVRQLKDGGVLVIPVE 174 (205)
T ss_pred EEEEccCcc----------hhhHHHHHhcCcCcEEEEEEc
Confidence 999875321 233567889999999988763
No 43
>TIGR00080 pimt protein-L-isoaspartate(D-aspartate) O-methyltransferase. Among the prokaryotes, the gene name is pcm. Among eukaryotes, pimt.
Probab=99.47 E-value=5.4e-13 Score=113.18 Aligned_cols=109 Identities=20% Similarity=0.279 Sum_probs=84.6
Q ss_pred HHhcCCCCCCCCcEEEEcCcccHHHHHHHHHCC-CceEEEEECChHHHHHHHHhcCccccccCCCCcEEEEEcccccc-c
Q 035593 68 AFATLPPILPPGPIGILGFGAGSAARLILDLYP-EAVIHGWELDPSVIKVAREFFALEKLEKSYPDRLFVYVGNALKA-S 145 (269)
Q Consensus 68 ~~~~~~~l~~~~~VL~iG~G~G~~~~~l~~~~p-~~~v~~vEidp~~~~~a~~~~~~~~~~~~~~~rv~~~~~D~~~~-~ 145 (269)
.|.....+.+..+|||||||+|..+..+++..+ +.+|++||+++++++.|++++.... -.+++++.+|+.+. .
T Consensus 68 ~~~~~l~~~~~~~VLDiG~GsG~~a~~la~~~~~~g~V~~vD~~~~~~~~A~~~~~~~g-----~~~v~~~~~d~~~~~~ 142 (215)
T TIGR00080 68 MMTELLELKPGMKVLEIGTGSGYQAAVLAEIVGRDGLVVSIERIPELAEKAERRLRKLG-----LDNVIVIVGDGTQGWE 142 (215)
T ss_pred HHHHHhCCCCcCEEEEECCCccHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHCC-----CCCeEEEECCcccCCc
Confidence 343333456789999999999999999998754 5689999999999999999875332 24799999999876 4
Q ss_pred cCCCeeEEEEcCCCCCCCCCCCCcHHHHHHHHhhccCCcEEEEEec
Q 035593 146 LKDGFSGILVDLFSKGSLLSELEDPNTWEKLRQCLRKGGRIMVNVG 191 (269)
Q Consensus 146 ~~~~yD~I~~d~~~~~~~~~~l~~~e~~~~~~~~L~pgG~l~~~~~ 191 (269)
...+||+|+++.... ...+.+.+.|+|||++++.+.
T Consensus 143 ~~~~fD~Ii~~~~~~----------~~~~~~~~~L~~gG~lv~~~~ 178 (215)
T TIGR00080 143 PLAPYDRIYVTAAGP----------KIPEALIDQLKEGGILVMPVG 178 (215)
T ss_pred ccCCCCEEEEcCCcc----------cccHHHHHhcCcCcEEEEEEc
Confidence 456899999875321 233567889999999998764
No 44
>PRK11805 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=99.46 E-value=2.4e-12 Score=114.81 Aligned_cols=142 Identities=18% Similarity=0.204 Sum_probs=100.1
Q ss_pred CCcEEEEcCcccHHHHHHHHHCCCceEEEEECChHHHHHHHHhcCccccccCCCCcEEEEEccccccccCCCeeEEEEcC
Q 035593 78 PGPIGILGFGAGSAARLILDLYPEAVIHGWELDPSVIKVAREFFALEKLEKSYPDRLFVYVGNALKASLKDGFSGILVDL 157 (269)
Q Consensus 78 ~~~VL~iG~G~G~~~~~l~~~~p~~~v~~vEidp~~~~~a~~~~~~~~~~~~~~~rv~~~~~D~~~~~~~~~yD~I~~d~ 157 (269)
+.+|||+|||+|.++..+++.+|+.+|+++|+|+.+++.|++++.... ...+++++++|+.+....++||+|+++.
T Consensus 134 ~~~VLDlG~GsG~iai~la~~~p~~~V~avDis~~al~~A~~n~~~~~----l~~~i~~~~~D~~~~l~~~~fDlIvsNP 209 (307)
T PRK11805 134 VTRILDLCTGSGCIAIACAYAFPDAEVDAVDISPDALAVAEINIERHG----LEDRVTLIESDLFAALPGRRYDLIVSNP 209 (307)
T ss_pred CCEEEEEechhhHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhC----CCCcEEEEECchhhhCCCCCccEEEECC
Confidence 368999999999999999998899999999999999999999875332 1357999999987654445899999985
Q ss_pred CCCCC-----C------CCC--C--------CcHHHHHHHHhhccCCcEEEEEecCCCccccccccchhHHHHHHHHHHH
Q 035593 158 FSKGS-----L------LSE--L--------EDPNTWEKLRQCLRKGGRIMVNVGGSCVEAEDSRRDGKVVMEATLKAMH 216 (269)
Q Consensus 158 ~~~~~-----~------~~~--l--------~~~e~~~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 216 (269)
+-... . .+. + ....+++.+.+.|+|||.+++.+... . . .+.
T Consensus 210 Pyi~~~~~~~l~~~~~~eP~~AL~gg~dGl~~~~~i~~~a~~~L~pgG~l~~E~g~~-----------~---~----~~~ 271 (307)
T PRK11805 210 PYVDAEDMADLPAEYRHEPELALAAGDDGLDLVRRILAEAPDYLTEDGVLVVEVGNS-----------R---V----HLE 271 (307)
T ss_pred CCCCccchhhcCHhhccCccceeeCCCchHHHHHHHHHHHHHhcCCCCEEEEEECcC-----------H---H----HHH
Confidence 32110 0 010 0 12467888999999999999987432 1 1 133
Q ss_pred HHhcC-ceEEEEcCCCCceEEEEecC
Q 035593 217 KVFGK-KLYVLSLGNRKDDSLIALTG 241 (269)
Q Consensus 217 ~~F~~-~v~~~~~~~~~n~v~~~~~~ 241 (269)
+.|++ .+.|.......-.++++...
T Consensus 272 ~~~~~~~~~~~~~~~~~~~~~~~~~~ 297 (307)
T PRK11805 272 EAYPDVPFTWLEFENGGDGVFLLTRE 297 (307)
T ss_pred HHHhhCCCEEEEecCCCceEEEEEHH
Confidence 33432 24566665656666666543
No 45
>PRK11207 tellurite resistance protein TehB; Provisional
Probab=99.46 E-value=6e-13 Score=111.40 Aligned_cols=105 Identities=20% Similarity=0.304 Sum_probs=80.2
Q ss_pred CCCCCcEEEEcCcccHHHHHHHHHCCCceEEEEECChHHHHHHHHhcCccccccCCCCcEEEEEccccccccCCCeeEEE
Q 035593 75 ILPPGPIGILGFGAGSAARLILDLYPEAVIHGWELDPSVIKVAREFFALEKLEKSYPDRLFVYVGNALKASLKDGFSGIL 154 (269)
Q Consensus 75 l~~~~~VL~iG~G~G~~~~~l~~~~p~~~v~~vEidp~~~~~a~~~~~~~~~~~~~~~rv~~~~~D~~~~~~~~~yD~I~ 154 (269)
..++.+|||+|||+|..+..++++ +.+|+++|+++.+++.|++...... -.+++++.+|..++...++||+|+
T Consensus 28 ~~~~~~vLDiGcG~G~~a~~La~~--g~~V~gvD~S~~~i~~a~~~~~~~~-----~~~v~~~~~d~~~~~~~~~fD~I~ 100 (197)
T PRK11207 28 VVKPGKTLDLGCGNGRNSLYLAAN--GFDVTAWDKNPMSIANLERIKAAEN-----LDNLHTAVVDLNNLTFDGEYDFIL 100 (197)
T ss_pred cCCCCcEEEECCCCCHHHHHHHHC--CCEEEEEeCCHHHHHHHHHHHHHcC-----CCcceEEecChhhCCcCCCcCEEE
Confidence 346789999999999999999983 6799999999999999998764322 235889999988774456799999
Q ss_pred EcCCCCCCCCCCCCcHHHHHHHHhhccCCcEEEE
Q 035593 155 VDLFSKGSLLSELEDPNTWEKLRQCLRKGGRIMV 188 (269)
Q Consensus 155 ~d~~~~~~~~~~l~~~e~~~~~~~~L~pgG~l~~ 188 (269)
+...-+ ...+ -....+++.+++.|+|||.+++
T Consensus 101 ~~~~~~-~~~~-~~~~~~l~~i~~~LkpgG~~~~ 132 (197)
T PRK11207 101 STVVLM-FLEA-KTIPGLIANMQRCTKPGGYNLI 132 (197)
T ss_pred Eecchh-hCCH-HHHHHHHHHHHHHcCCCcEEEE
Confidence 753211 1111 1236899999999999998544
No 46
>PLN02781 Probable caffeoyl-CoA O-methyltransferase
Probab=99.46 E-value=2.2e-13 Score=116.99 Aligned_cols=103 Identities=20% Similarity=0.207 Sum_probs=85.8
Q ss_pred CCCCCcEEEEcCcccHHHHHHHHHCC-CceEEEEECChHHHHHHHHhcCccccccCCCCcEEEEEcccccc-c------c
Q 035593 75 ILPPGPIGILGFGAGSAARLILDLYP-EAVIHGWELDPSVIKVAREFFALEKLEKSYPDRLFVYVGNALKA-S------L 146 (269)
Q Consensus 75 l~~~~~VL~iG~G~G~~~~~l~~~~p-~~~v~~vEidp~~~~~a~~~~~~~~~~~~~~~rv~~~~~D~~~~-~------~ 146 (269)
+.++++||+||||+|..+.++++..+ +.+|+++|+|+++++.|++++...+. ..+++++.+|+.+. . .
T Consensus 66 ~~~~~~vLEiGt~~G~s~l~la~~~~~~g~v~tiD~d~~~~~~A~~n~~~~gl----~~~i~~~~gda~~~L~~l~~~~~ 141 (234)
T PLN02781 66 IMNAKNTLEIGVFTGYSLLTTALALPEDGRITAIDIDKEAYEVGLEFIKKAGV----DHKINFIQSDALSALDQLLNNDP 141 (234)
T ss_pred HhCCCEEEEecCcccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCC----CCcEEEEEccHHHHHHHHHhCCC
Confidence 34689999999999999999888765 67999999999999999999854331 36899999999886 1 1
Q ss_pred CCCeeEEEEcCCCCCCCCCCCCcHHHHHHHHhhccCCcEEEE
Q 035593 147 KDGFSGILVDLFSKGSLLSELEDPNTWEKLRQCLRKGGRIMV 188 (269)
Q Consensus 147 ~~~yD~I~~d~~~~~~~~~~l~~~e~~~~~~~~L~pgG~l~~ 188 (269)
.++||+||+|+.... ..++++.+.+.|+|||++++
T Consensus 142 ~~~fD~VfiDa~k~~-------y~~~~~~~~~ll~~GG~ii~ 176 (234)
T PLN02781 142 KPEFDFAFVDADKPN-------YVHFHEQLLKLVKVGGIIAF 176 (234)
T ss_pred CCCCCEEEECCCHHH-------HHHHHHHHHHhcCCCeEEEE
Confidence 468999999976432 35899999999999999987
No 47
>COG2227 UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase [Coenzyme metabolism]
Probab=99.46 E-value=3.5e-13 Score=113.56 Aligned_cols=106 Identities=15% Similarity=0.139 Sum_probs=84.6
Q ss_pred CCCCcEEEEcCcccHHHHHHHHHCCCceEEEEECChHHHHHHHHhcCccccccCCCCcEEEEEcccccc-ccCCCeeEEE
Q 035593 76 LPPGPIGILGFGAGSAARLILDLYPEAVIHGWELDPSVIKVAREFFALEKLEKSYPDRLFVYVGNALKA-SLKDGFSGIL 154 (269)
Q Consensus 76 ~~~~~VL~iG~G~G~~~~~l~~~~p~~~v~~vEidp~~~~~a~~~~~~~~~~~~~~~rv~~~~~D~~~~-~~~~~yD~I~ 154 (269)
.+..+|||+|||+|.++..+++ -+++|+++|+++++++.|+.+...+. -.+.+.+....+. ...++||+|+
T Consensus 58 l~g~~vLDvGCGgG~Lse~mAr--~Ga~VtgiD~se~~I~~Ak~ha~e~g------v~i~y~~~~~edl~~~~~~FDvV~ 129 (243)
T COG2227 58 LPGLRVLDVGCGGGILSEPLAR--LGASVTGIDASEKPIEVAKLHALESG------VNIDYRQATVEDLASAGGQFDVVT 129 (243)
T ss_pred CCCCeEEEecCCccHhhHHHHH--CCCeeEEecCChHHHHHHHHhhhhcc------ccccchhhhHHHHHhcCCCccEEE
Confidence 4788999999999999999998 47999999999999999999875432 2355777777776 4458999999
Q ss_pred EcCCCCCCCCCCCCc-HHHHHHHHhhccCCcEEEEEecCCC
Q 035593 155 VDLFSKGSLLSELED-PNTWEKLRQCLRKGGRIMVNVGGSC 194 (269)
Q Consensus 155 ~d~~~~~~~~~~l~~-~e~~~~~~~~L~pgG~l~~~~~~~~ 194 (269)
+- .+..|... ..|++.|.+.+||||++++...+..
T Consensus 130 cm-----EVlEHv~dp~~~~~~c~~lvkP~G~lf~STinrt 165 (243)
T COG2227 130 CM-----EVLEHVPDPESFLRACAKLVKPGGILFLSTINRT 165 (243)
T ss_pred Eh-----hHHHccCCHHHHHHHHHHHcCCCcEEEEeccccC
Confidence 63 23334333 5799999999999999999887654
No 48
>PLN02396 hexaprenyldihydroxybenzoate methyltransferase
Probab=99.46 E-value=4.3e-13 Score=120.02 Aligned_cols=106 Identities=13% Similarity=0.107 Sum_probs=84.6
Q ss_pred CCCcEEEEcCcccHHHHHHHHHCCCceEEEEECChHHHHHHHHhcCccccccCCCCcEEEEEcccccc-ccCCCeeEEEE
Q 035593 77 PPGPIGILGFGAGSAARLILDLYPEAVIHGWELDPSVIKVAREFFALEKLEKSYPDRLFVYVGNALKA-SLKDGFSGILV 155 (269)
Q Consensus 77 ~~~~VL~iG~G~G~~~~~l~~~~p~~~v~~vEidp~~~~~a~~~~~~~~~~~~~~~rv~~~~~D~~~~-~~~~~yD~I~~ 155 (269)
+..+|||||||+|.++..+++ ++.+|++||+++++++.|++++.... ...+++++++|+.++ ...++||+|++
T Consensus 131 ~g~~ILDIGCG~G~~s~~La~--~g~~V~GID~s~~~i~~Ar~~~~~~~----~~~~i~~~~~dae~l~~~~~~FD~Vi~ 204 (322)
T PLN02396 131 EGLKFIDIGCGGGLLSEPLAR--MGATVTGVDAVDKNVKIARLHADMDP----VTSTIEYLCTTAEKLADEGRKFDAVLS 204 (322)
T ss_pred CCCEEEEeeCCCCHHHHHHHH--cCCEEEEEeCCHHHHHHHHHHHHhcC----cccceeEEecCHHHhhhccCCCCEEEE
Confidence 356899999999999998886 57899999999999999998864321 124799999999887 45678999996
Q ss_pred cCCCCCCCCCCC-CcHHHHHHHHhhccCCcEEEEEecCC
Q 035593 156 DLFSKGSLLSEL-EDPNTWEKLRQCLRKGGRIMVNVGGS 193 (269)
Q Consensus 156 d~~~~~~~~~~l-~~~e~~~~~~~~L~pgG~l~~~~~~~ 193 (269)
-. +..|+ ...++++++++.|||||.+++...+.
T Consensus 205 ~~-----vLeHv~d~~~~L~~l~r~LkPGG~liist~nr 238 (322)
T PLN02396 205 LE-----VIEHVANPAEFCKSLSALTIPNGATVLSTINR 238 (322)
T ss_pred hh-----HHHhcCCHHHHHHHHHHHcCCCcEEEEEECCc
Confidence 32 11222 23689999999999999999987654
No 49
>PRK09489 rsmC 16S ribosomal RNA m2G1207 methyltransferase; Provisional
Probab=99.45 E-value=3.3e-12 Score=115.39 Aligned_cols=107 Identities=15% Similarity=0.187 Sum_probs=83.2
Q ss_pred CCCcEEEEcCcccHHHHHHHHHCCCceEEEEECChHHHHHHHHhcCccccccCCCCcEEEEEccccccccCCCeeEEEEc
Q 035593 77 PPGPIGILGFGAGSAARLILDLYPEAVIHGWELDPSVIKVAREFFALEKLEKSYPDRLFVYVGNALKASLKDGFSGILVD 156 (269)
Q Consensus 77 ~~~~VL~iG~G~G~~~~~l~~~~p~~~v~~vEidp~~~~~a~~~~~~~~~~~~~~~rv~~~~~D~~~~~~~~~yD~I~~d 156 (269)
...+|||+|||+|.++..++++.|+.+|+++|+|+.+++.|++++..+. -..+++.+|+... ..++||+|+++
T Consensus 196 ~~g~VLDlGCG~G~ls~~la~~~p~~~v~~vDis~~Al~~A~~nl~~n~------l~~~~~~~D~~~~-~~~~fDlIvsN 268 (342)
T PRK09489 196 TKGKVLDVGCGAGVLSAVLARHSPKIRLTLSDVSAAALESSRATLAANG------LEGEVFASNVFSD-IKGRFDMIISN 268 (342)
T ss_pred CCCeEEEeccCcCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcC------CCCEEEEcccccc-cCCCccEEEEC
Confidence 3568999999999999999998898999999999999999999875432 2357778887654 35689999997
Q ss_pred CCCCCCCCC-CCCcHHHHHHHHhhccCCcEEEEEe
Q 035593 157 LFSKGSLLS-ELEDPNTWEKLRQCLRKGGRIMVNV 190 (269)
Q Consensus 157 ~~~~~~~~~-~l~~~e~~~~~~~~L~pgG~l~~~~ 190 (269)
.+-+..... .-...++++.+.++|+|||.+.+..
T Consensus 269 PPFH~g~~~~~~~~~~~i~~a~~~LkpgG~L~iVa 303 (342)
T PRK09489 269 PPFHDGIQTSLDAAQTLIRGAVRHLNSGGELRIVA 303 (342)
T ss_pred CCccCCccccHHHHHHHHHHHHHhcCcCCEEEEEE
Confidence 643322111 1123689999999999999886644
No 50
>PF13649 Methyltransf_25: Methyltransferase domain; PDB: 3BXO_B 3GGD_A 3PX2_A 3PX3_A 3PFH_D 3PFG_A 1Y8C_A.
Probab=99.45 E-value=1.2e-13 Score=103.07 Aligned_cols=94 Identities=20% Similarity=0.346 Sum_probs=72.7
Q ss_pred EEEEcCcccHHHHHHHHHC---CCceEEEEECChHHHHHHHHhcCccccccCCCCcEEEEEcccccc-ccCCCeeEEEEc
Q 035593 81 IGILGFGAGSAARLILDLY---PEAVIHGWELDPSVIKVAREFFALEKLEKSYPDRLFVYVGNALKA-SLKDGFSGILVD 156 (269)
Q Consensus 81 VL~iG~G~G~~~~~l~~~~---p~~~v~~vEidp~~~~~a~~~~~~~~~~~~~~~rv~~~~~D~~~~-~~~~~yD~I~~d 156 (269)
|||+|||+|..++.+.+.+ |..++++||+|+++++.|++++... ..+++++++|+.++ ...++||+|++-
T Consensus 1 ILDlgcG~G~~~~~l~~~~~~~~~~~~~gvD~s~~~l~~~~~~~~~~------~~~~~~~~~D~~~l~~~~~~~D~v~~~ 74 (101)
T PF13649_consen 1 ILDLGCGTGRVTRALARRFDAGPSSRVIGVDISPEMLELAKKRFSED------GPKVRFVQADARDLPFSDGKFDLVVCS 74 (101)
T ss_dssp -EEET-TTSHHHHHHHHHS-----SEEEEEES-HHHHHHHHHHSHHT------TTTSEEEESCTTCHHHHSSSEEEEEE-
T ss_pred CEEeecCCcHHHHHHHHHhhhcccceEEEEECCHHHHHHHHHhchhc------CCceEEEECCHhHCcccCCCeeEEEEc
Confidence 7999999999999999886 3589999999999999999987432 34799999999988 567799999982
Q ss_pred CCCCCCCCCCCC---cHHHHHHHHhhccCCc
Q 035593 157 LFSKGSLLSELE---DPNTWEKLRQCLRKGG 184 (269)
Q Consensus 157 ~~~~~~~~~~l~---~~e~~~~~~~~L~pgG 184 (269)
.. ...++. ...+++++.++|+|||
T Consensus 75 ~~----~~~~~~~~~~~~ll~~~~~~l~pgG 101 (101)
T PF13649_consen 75 GL----SLHHLSPEELEALLRRIARLLRPGG 101 (101)
T ss_dssp TT----GGGGSSHHHHHHHHHHHHHTEEEEE
T ss_pred CC----ccCCCCHHHHHHHHHHHHHHhCCCC
Confidence 11 111222 3689999999999998
No 51
>PTZ00098 phosphoethanolamine N-methyltransferase; Provisional
Probab=99.44 E-value=1.4e-12 Score=113.98 Aligned_cols=116 Identities=16% Similarity=0.200 Sum_probs=89.6
Q ss_pred HHHHHhcCCCCCCCCcEEEEcCcccHHHHHHHHHCCCceEEEEECChHHHHHHHHhcCccccccCCCCcEEEEEcccccc
Q 035593 65 YFDAFATLPPILPPGPIGILGFGAGSAARLILDLYPEAVIHGWELDPSVIKVAREFFALEKLEKSYPDRLFVYVGNALKA 144 (269)
Q Consensus 65 y~~~~~~~~~l~~~~~VL~iG~G~G~~~~~l~~~~p~~~v~~vEidp~~~~~a~~~~~~~~~~~~~~~rv~~~~~D~~~~ 144 (269)
..+.++....+.+..+|||||||+|..+..+++.+ +++|+++|+++.+++.|++++.. .++++++.+|+...
T Consensus 40 ~~~~~l~~l~l~~~~~VLDiGcG~G~~a~~la~~~-~~~v~giD~s~~~~~~a~~~~~~-------~~~i~~~~~D~~~~ 111 (263)
T PTZ00098 40 ATTKILSDIELNENSKVLDIGSGLGGGCKYINEKY-GAHVHGVDICEKMVNIAKLRNSD-------KNKIEFEANDILKK 111 (263)
T ss_pred HHHHHHHhCCCCCCCEEEEEcCCCChhhHHHHhhc-CCEEEEEECCHHHHHHHHHHcCc-------CCceEEEECCcccC
Confidence 44555444456678899999999999999988754 67999999999999999998652 25799999998876
Q ss_pred -ccCCCeeEEEE-cCCCCCCCCCCCCcHHHHHHHHhhccCCcEEEEEec
Q 035593 145 -SLKDGFSGILV-DLFSKGSLLSELEDPNTWEKLRQCLRKGGRIMVNVG 191 (269)
Q Consensus 145 -~~~~~yD~I~~-d~~~~~~~~~~l~~~e~~~~~~~~L~pgG~l~~~~~ 191 (269)
..+++||+|++ ++..+ .+. -....+++++++.|||||.+++..+
T Consensus 112 ~~~~~~FD~V~s~~~l~h--~~~-~d~~~~l~~i~r~LkPGG~lvi~d~ 157 (263)
T PTZ00098 112 DFPENTFDMIYSRDAILH--LSY-ADKKKLFEKCYKWLKPNGILLITDY 157 (263)
T ss_pred CCCCCCeEEEEEhhhHHh--CCH-HHHHHHHHHHHHHcCCCcEEEEEEe
Confidence 45678999997 32221 110 0246899999999999999998764
No 52
>COG2230 Cfa Cyclopropane fatty acid synthase and related methyltransferases [Cell envelope biogenesis, outer membrane]
Probab=99.44 E-value=8.3e-13 Score=114.79 Aligned_cols=142 Identities=18% Similarity=0.171 Sum_probs=104.3
Q ss_pred EEecCCCceeeeeecCCc--ccchHH---HHHhcCCCCCCCCcEEEEcCcccHHHHHHHHHCCCceEEEEECChHHHHHH
Q 035593 43 LLLDGPGNIHSISYLFRS--LTNTYF---DAFATLPPILPPGPIGILGFGAGSAARLILDLYPEAVIHGWELDPSVIKVA 117 (269)
Q Consensus 43 L~~~~~~~~qs~~~~~~~--l~~~y~---~~~~~~~~l~~~~~VL~iG~G~G~~~~~l~~~~p~~~v~~vEidp~~~~~a 117 (269)
|++|.+..+-++...+.. ++-.-. +.+.....|.|..+|||||||.|.++.++++++ +++|++|.+|++..+.+
T Consensus 33 l~Ld~~~~Yscayf~~~~~tL~eAQ~~k~~~~~~kl~L~~G~~lLDiGCGWG~l~~~aA~~y-~v~V~GvTlS~~Q~~~~ 111 (283)
T COG2230 33 LFLDPSMTYSCAYFEDPDMTLEEAQRAKLDLILEKLGLKPGMTLLDIGCGWGGLAIYAAEEY-GVTVVGVTLSEEQLAYA 111 (283)
T ss_pred HhcCCCCceeeEEeCCCCCChHHHHHHHHHHHHHhcCCCCCCEEEEeCCChhHHHHHHHHHc-CCEEEEeeCCHHHHHHH
Confidence 666766555555554432 222222 222344568899999999999999999999988 89999999999999999
Q ss_pred HHhcCccccccCCCCcEEEEEccccccccCCCeeEEEE-cCCCCCCCCCCCCcHHHHHHHHhhccCCcEEEEEecCCC
Q 035593 118 REFFALEKLEKSYPDRLFVYVGNALKASLKDGFSGILV-DLFSKGSLLSELEDPNTWEKLRQCLRKGGRIMVNVGGSC 194 (269)
Q Consensus 118 ~~~~~~~~~~~~~~~rv~~~~~D~~~~~~~~~yD~I~~-d~~~~~~~~~~l~~~e~~~~~~~~L~pgG~l~~~~~~~~ 194 (269)
++.+...+ ...+++++.+|-+++... ||.|++ .++.+.+. -.-.+||+.+++.|+|||.+++......
T Consensus 112 ~~r~~~~g----l~~~v~v~l~d~rd~~e~--fDrIvSvgmfEhvg~---~~~~~ff~~~~~~L~~~G~~llh~I~~~ 180 (283)
T COG2230 112 EKRIAARG----LEDNVEVRLQDYRDFEEP--FDRIVSVGMFEHVGK---ENYDDFFKKVYALLKPGGRMLLHSITGP 180 (283)
T ss_pred HHHHHHcC----CCcccEEEeccccccccc--cceeeehhhHHHhCc---ccHHHHHHHHHhhcCCCceEEEEEecCC
Confidence 99774332 135899999999988433 999995 33333211 1247999999999999999998877653
No 53
>PRK15451 tRNA cmo(5)U34 methyltransferase; Provisional
Probab=99.44 E-value=4.7e-13 Score=115.95 Aligned_cols=108 Identities=19% Similarity=0.230 Sum_probs=82.4
Q ss_pred CCCCcEEEEcCcccHHHHHHHHH--CCCceEEEEECChHHHHHHHHhcCccccccCCCCcEEEEEccccccccCCCeeEE
Q 035593 76 LPPGPIGILGFGAGSAARLILDL--YPEAVIHGWELDPSVIKVAREFFALEKLEKSYPDRLFVYVGNALKASLKDGFSGI 153 (269)
Q Consensus 76 ~~~~~VL~iG~G~G~~~~~l~~~--~p~~~v~~vEidp~~~~~a~~~~~~~~~~~~~~~rv~~~~~D~~~~~~~~~yD~I 153 (269)
.+..+|||||||+|..+..+++. .|+.+++++|+++.|++.|++++.... ...+++++.+|+.+... ..+|+|
T Consensus 55 ~~~~~vLDlGcGtG~~~~~l~~~~~~~~~~v~gvD~S~~ml~~A~~~~~~~~----~~~~v~~~~~d~~~~~~-~~~D~v 129 (247)
T PRK15451 55 QPGTQVYDLGCSLGAATLSVRRNIHHDNCKIIAIDNSPAMIERCRRHIDAYK----APTPVDVIEGDIRDIAI-ENASMV 129 (247)
T ss_pred CCCCEEEEEcccCCHHHHHHHHhcCCCCCeEEEEeCCHHHHHHHHHHHHhcC----CCCCeEEEeCChhhCCC-CCCCEE
Confidence 46789999999999999888873 478999999999999999999874321 13479999999887633 358998
Q ss_pred EEcCCCCCCCCCCCCcHHHHHHHHhhccCCcEEEEEe
Q 035593 154 LVDLFSKGSLLSELEDPNTWEKLRQCLRKGGRIMVNV 190 (269)
Q Consensus 154 ~~d~~~~~~~~~~l~~~e~~~~~~~~L~pgG~l~~~~ 190 (269)
++...-+ ...+ -....+++++++.|+|||.+++.-
T Consensus 130 v~~~~l~-~l~~-~~~~~~l~~i~~~LkpGG~l~l~e 164 (247)
T PRK15451 130 VLNFTLQ-FLEP-SERQALLDKIYQGLNPGGALVLSE 164 (247)
T ss_pred ehhhHHH-hCCH-HHHHHHHHHHHHhcCCCCEEEEEE
Confidence 8643211 1111 113579999999999999998854
No 54
>PF02353 CMAS: Mycolic acid cyclopropane synthetase; InterPro: IPR003333 This entry represents mycolic acid cyclopropane synthases and related enzymes, including CmaA1, CmaA2 (cyclopropane mycolic acid synthase A1 and A2) and MmaA1-4 (methoxymycolic acid synthase A1-4). All are thought to be S-adenosyl-L-methionine (SAM) utilising methyltransferases []. Mycolic acid cyclopropane synthase or cyclopropane-fatty-acyl-phospholipid synthase (CFA synthase) 2.1.1.79 from EC catalyses the reaction: S-adenosyl-L-methionine + phospholipid olefinic fatty acid -> S-adenosyl-L-homocysteine + phospholipid cyclopropane fatty acid. The major mycolic acid produced by Mycobacterium tuberculosis contains two cis-cyclopropanes in the meromycolate chain. Cyclopropanation may contribute to the structural integrity of the cell wall complex [].; GO: 0008610 lipid biosynthetic process; PDB: 3HA5_A 2FK8_A 3HA7_A 3HA3_A 2FK7_A 1KPG_D 1KP9_B 1KPH_D 3VC2_E 3VC1_D ....
Probab=99.44 E-value=8.1e-13 Score=115.79 Aligned_cols=114 Identities=20% Similarity=0.245 Sum_probs=80.6
Q ss_pred hcCCCCCCCCcEEEEcCcccHHHHHHHHHCCCceEEEEECChHHHHHHHHhcCccccccCCCCcEEEEEccccccccCCC
Q 035593 70 ATLPPILPPGPIGILGFGAGSAARLILDLYPEAVIHGWELDPSVIKVAREFFALEKLEKSYPDRLFVYVGNALKASLKDG 149 (269)
Q Consensus 70 ~~~~~l~~~~~VL~iG~G~G~~~~~l~~~~p~~~v~~vEidp~~~~~a~~~~~~~~~~~~~~~rv~~~~~D~~~~~~~~~ 149 (269)
.....+.|..+|||||||.|.++.++++++ +++|++|.+|++..+.|++.....+ ...++++..+|.+++.. +
T Consensus 55 ~~~~~l~~G~~vLDiGcGwG~~~~~~a~~~-g~~v~gitlS~~Q~~~a~~~~~~~g----l~~~v~v~~~D~~~~~~--~ 127 (273)
T PF02353_consen 55 CEKLGLKPGDRVLDIGCGWGGLAIYAAERY-GCHVTGITLSEEQAEYARERIREAG----LEDRVEVRLQDYRDLPG--K 127 (273)
T ss_dssp HTTTT--TT-EEEEES-TTSHHHHHHHHHH---EEEEEES-HHHHHHHHHHHHCST----SSSTEEEEES-GGG-----S
T ss_pred HHHhCCCCCCEEEEeCCCccHHHHHHHHHc-CcEEEEEECCHHHHHHHHHHHHhcC----CCCceEEEEeeccccCC--C
Confidence 344467789999999999999999999987 8999999999999999998874332 14689999999887633 9
Q ss_pred eeEEEEc-CCCCCCCCCCCCcHHHHHHHHhhccCCcEEEEEecCC
Q 035593 150 FSGILVD-LFSKGSLLSELEDPNTWEKLRQCLRKGGRIMVNVGGS 193 (269)
Q Consensus 150 yD~I~~d-~~~~~~~~~~l~~~e~~~~~~~~L~pgG~l~~~~~~~ 193 (269)
||.|++- ++.+ +. .-....||+.+.+.|+|||.+++..+..
T Consensus 128 fD~IvSi~~~Eh--vg-~~~~~~~f~~~~~~LkpgG~~~lq~i~~ 169 (273)
T PF02353_consen 128 FDRIVSIEMFEH--VG-RKNYPAFFRKISRLLKPGGRLVLQTITH 169 (273)
T ss_dssp -SEEEEESEGGG--TC-GGGHHHHHHHHHHHSETTEEEEEEEEEE
T ss_pred CCEEEEEechhh--cC-hhHHHHHHHHHHHhcCCCcEEEEEeccc
Confidence 9999853 2222 11 1123689999999999999999876644
No 55
>PLN02476 O-methyltransferase
Probab=99.43 E-value=6e-13 Score=116.16 Aligned_cols=104 Identities=22% Similarity=0.279 Sum_probs=87.4
Q ss_pred CCCCCcEEEEcCcccHHHHHHHHHCC-CceEEEEECChHHHHHHHHhcCccccccCCCCcEEEEEcccccc--c---c--
Q 035593 75 ILPPGPIGILGFGAGSAARLILDLYP-EAVIHGWELDPSVIKVAREFFALEKLEKSYPDRLFVYVGNALKA--S---L-- 146 (269)
Q Consensus 75 l~~~~~VL~iG~G~G~~~~~l~~~~p-~~~v~~vEidp~~~~~a~~~~~~~~~~~~~~~rv~~~~~D~~~~--~---~-- 146 (269)
+.++++||+||+|+|..+.++++..| +.+|+++|++++..+.|++++...+ ..++++++.+|+.+. . .
T Consensus 116 ~~~ak~VLEIGT~tGySal~lA~al~~~G~V~TiE~d~e~~~~Ar~n~~~aG----l~~~I~li~GdA~e~L~~l~~~~~ 191 (278)
T PLN02476 116 ILGAERCIEVGVYTGYSSLAVALVLPESGCLVACERDSNSLEVAKRYYELAG----VSHKVNVKHGLAAESLKSMIQNGE 191 (278)
T ss_pred hcCCCeEEEecCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcC----CCCcEEEEEcCHHHHHHHHHhccc
Confidence 34689999999999999999998765 6789999999999999999985433 246899999999886 1 1
Q ss_pred CCCeeEEEEcCCCCCCCCCCCCcHHHHHHHHhhccCCcEEEEE
Q 035593 147 KDGFSGILVDLFSKGSLLSELEDPNTWEKLRQCLRKGGRIMVN 189 (269)
Q Consensus 147 ~~~yD~I~~d~~~~~~~~~~l~~~e~~~~~~~~L~pgG~l~~~ 189 (269)
.++||+||+|+.... ..++|+.+.+.|+|||+++++
T Consensus 192 ~~~FD~VFIDa~K~~-------Y~~y~e~~l~lL~~GGvIV~D 227 (278)
T PLN02476 192 GSSYDFAFVDADKRM-------YQDYFELLLQLVRVGGVIVMD 227 (278)
T ss_pred CCCCCEEEECCCHHH-------HHHHHHHHHHhcCCCcEEEEe
Confidence 368999999986532 478999999999999999984
No 56
>PRK07402 precorrin-6B methylase; Provisional
Probab=99.43 E-value=2.3e-12 Score=107.75 Aligned_cols=106 Identities=18% Similarity=0.184 Sum_probs=84.3
Q ss_pred CCCCCCcEEEEcCcccHHHHHHHHHCCCceEEEEECChHHHHHHHHhcCccccccCCCCcEEEEEcccccc--ccCCCee
Q 035593 74 PILPPGPIGILGFGAGSAARLILDLYPEAVIHGWELDPSVIKVAREFFALEKLEKSYPDRLFVYVGNALKA--SLKDGFS 151 (269)
Q Consensus 74 ~l~~~~~VL~iG~G~G~~~~~l~~~~p~~~v~~vEidp~~~~~a~~~~~~~~~~~~~~~rv~~~~~D~~~~--~~~~~yD 151 (269)
.+.+..+|||+|||+|.++..+++..++.+|+++|+||++++.|++++.... -.+++++.+|+.+. .....+|
T Consensus 37 ~~~~~~~VLDiG~G~G~~~~~la~~~~~~~V~~vD~s~~~~~~a~~n~~~~~-----~~~v~~~~~d~~~~~~~~~~~~d 111 (196)
T PRK07402 37 RLEPDSVLWDIGAGTGTIPVEAGLLCPKGRVIAIERDEEVVNLIRRNCDRFG-----VKNVEVIEGSAPECLAQLAPAPD 111 (196)
T ss_pred CCCCCCEEEEeCCCCCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhC-----CCCeEEEECchHHHHhhCCCCCC
Confidence 3456789999999999999999887788899999999999999998864221 24699999998763 2234578
Q ss_pred EEEEcCCCCCCCCCCCCcHHHHHHHHhhccCCcEEEEEecC
Q 035593 152 GILVDLFSKGSLLSELEDPNTWEKLRQCLRKGGRIMVNVGG 192 (269)
Q Consensus 152 ~I~~d~~~~~~~~~~l~~~e~~~~~~~~L~pgG~l~~~~~~ 192 (269)
.|+++... ...++++.+.+.|+|||.+++....
T Consensus 112 ~v~~~~~~--------~~~~~l~~~~~~LkpgG~li~~~~~ 144 (196)
T PRK07402 112 RVCIEGGR--------PIKEILQAVWQYLKPGGRLVATASS 144 (196)
T ss_pred EEEEECCc--------CHHHHHHHHHHhcCCCeEEEEEeec
Confidence 88876321 1368999999999999999998754
No 57
>COG2519 GCD14 tRNA(1-methyladenosine) methyltransferase and related methyltransferases [Translation, ribosomal structure and biogenesis]
Probab=99.42 E-value=3.2e-12 Score=108.61 Aligned_cols=121 Identities=23% Similarity=0.338 Sum_probs=100.4
Q ss_pred CCCCCCcEEEEcCcccHHHHHHHHH-CCCceEEEEECChHHHHHHHHhcCccccccCCCCcEEEEEccccccccCCCeeE
Q 035593 74 PILPPGPIGILGFGAGSAARLILDL-YPEAVIHGWELDPSVIKVAREFFALEKLEKSYPDRLFVYVGNALKASLKDGFSG 152 (269)
Q Consensus 74 ~l~~~~~VL~iG~G~G~~~~~l~~~-~p~~~v~~vEidp~~~~~a~~~~~~~~~~~~~~~rv~~~~~D~~~~~~~~~yD~ 152 (269)
.+.|..+|++.|.|+|.++.+|++. .|..+|+.+|+.++.++.|++++..-. ..+++++..+|..+....+.||+
T Consensus 91 gi~pg~rVlEAGtGSG~lt~~La~~vg~~G~v~tyE~r~d~~k~A~~Nl~~~~----l~d~v~~~~~Dv~~~~~~~~vDa 166 (256)
T COG2519 91 GISPGSRVLEAGTGSGALTAYLARAVGPEGHVTTYEIREDFAKTARENLSEFG----LGDRVTLKLGDVREGIDEEDVDA 166 (256)
T ss_pred CCCCCCEEEEcccCchHHHHHHHHhhCCCceEEEEEecHHHHHHHHHHHHHhc----cccceEEEeccccccccccccCE
Confidence 3557899999999999999999974 467899999999999999999985322 13569999999999855559999
Q ss_pred EEEcCCCCCCCCCCCCcHHHHHHHHhhccCCcEEEEEecCCCccccccccchhHHHHHHHHHHHHH-h
Q 035593 153 ILVDLFSKGSLLSELEDPNTWEKLRQCLRKGGRIMVNVGGSCVEAEDSRRDGKVVMEATLKAMHKV-F 219 (269)
Q Consensus 153 I~~d~~~~~~~~~~l~~~e~~~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-F 219 (269)
|++|+.+++ ++++.+++.|+|||.+++.+ ++. .+...++..|++. |
T Consensus 167 v~LDmp~PW---------~~le~~~~~Lkpgg~~~~y~--P~v----------eQv~kt~~~l~~~g~ 213 (256)
T COG2519 167 VFLDLPDPW---------NVLEHVSDALKPGGVVVVYS--PTV----------EQVEKTVEALRERGF 213 (256)
T ss_pred EEEcCCChH---------HHHHHHHHHhCCCcEEEEEc--CCH----------HHHHHHHHHHHhcCc
Confidence 999998764 79999999999999999977 432 2567778888887 5
No 58
>PRK04266 fibrillarin; Provisional
Probab=99.42 E-value=8.4e-12 Score=106.50 Aligned_cols=138 Identities=17% Similarity=0.297 Sum_probs=94.2
Q ss_pred CCCCCCcEEEEcCcccHHHHHHHHHCCCceEEEEECChHHHHHHHHhcCccccccCCCCcEEEEEcccccc----ccCCC
Q 035593 74 PILPPGPIGILGFGAGSAARLILDLYPEAVIHGWELDPSVIKVAREFFALEKLEKSYPDRLFVYVGNALKA----SLKDG 149 (269)
Q Consensus 74 ~l~~~~~VL~iG~G~G~~~~~l~~~~p~~~v~~vEidp~~~~~a~~~~~~~~~~~~~~~rv~~~~~D~~~~----~~~~~ 149 (269)
.+.+..+|||+|||+|.++..+++..+..+|+++|+++.|++.+++.... .+++.++.+|+... ...++
T Consensus 69 ~i~~g~~VlD~G~G~G~~~~~la~~v~~g~V~avD~~~~ml~~l~~~a~~-------~~nv~~i~~D~~~~~~~~~l~~~ 141 (226)
T PRK04266 69 PIKKGSKVLYLGAASGTTVSHVSDIVEEGVVYAVEFAPRPMRELLEVAEE-------RKNIIPILADARKPERYAHVVEK 141 (226)
T ss_pred CCCCCCEEEEEccCCCHHHHHHHHhcCCCeEEEEECCHHHHHHHHHHhhh-------cCCcEEEECCCCCcchhhhcccc
Confidence 45678899999999999999999977767999999999999977766431 24689999998752 22356
Q ss_pred eeEEEEcCCCCCCCCCCCCcHHHHHHHHhhccCCcEEEEEecCCCccccccccchhHHHHHHHHHHHHH-hcCceEEEEc
Q 035593 150 FSGILVDLFSKGSLLSELEDPNTWEKLRQCLRKGGRIMVNVGGSCVEAEDSRRDGKVVMEATLKAMHKV-FGKKLYVLSL 228 (269)
Q Consensus 150 yD~I~~d~~~~~~~~~~l~~~e~~~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-F~~~v~~~~~ 228 (269)
||+|++|...+. ....+++.+++.|||||.+++.+.....+ ............++.++++ |. .+.+...
T Consensus 142 ~D~i~~d~~~p~------~~~~~L~~~~r~LKpGG~lvI~v~~~~~d---~~~~~~~~~~~~~~~l~~aGF~-~i~~~~l 211 (226)
T PRK04266 142 VDVIYQDVAQPN------QAEIAIDNAEFFLKDGGYLLLAIKARSID---VTKDPKEIFKEEIRKLEEGGFE-ILEVVDL 211 (226)
T ss_pred CCEEEECCCChh------HHHHHHHHHHHhcCCCcEEEEEEeccccc---CcCCHHHHHHHHHHHHHHcCCe-EEEEEcC
Confidence 999998754321 12356899999999999999853311100 0001122334455666665 63 4555444
No 59
>TIGR00537 hemK_rel_arch HemK-related putative methylase. The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. This model represents an archaeal and eukaryotic protein family that lacks an N-terminal domain found in HemK and its eubacterial homologs. It is found in a single copy in the first six completed archaeal and eukaryotic genomes.
Probab=99.41 E-value=1.1e-11 Score=102.08 Aligned_cols=108 Identities=21% Similarity=0.188 Sum_probs=82.1
Q ss_pred CCCCcEEEEcCcccHHHHHHHHHCCCceEEEEECChHHHHHHHHhcCccccccCCCCcEEEEEccccccccCCCeeEEEE
Q 035593 76 LPPGPIGILGFGAGSAARLILDLYPEAVIHGWELDPSVIKVAREFFALEKLEKSYPDRLFVYVGNALKASLKDGFSGILV 155 (269)
Q Consensus 76 ~~~~~VL~iG~G~G~~~~~l~~~~p~~~v~~vEidp~~~~~a~~~~~~~~~~~~~~~rv~~~~~D~~~~~~~~~yD~I~~ 155 (269)
.++.+|||+|||+|.++..+++..+ +|+++|++|++++.+++++... ..+++++.+|..+.. .++||+|++
T Consensus 18 ~~~~~vLdlG~G~G~~~~~l~~~~~--~v~~vD~s~~~~~~a~~~~~~~------~~~~~~~~~d~~~~~-~~~fD~Vi~ 88 (179)
T TIGR00537 18 LKPDDVLEIGAGTGLVAIRLKGKGK--CILTTDINPFAVKELRENAKLN------NVGLDVVMTDLFKGV-RGKFDVILF 88 (179)
T ss_pred cCCCeEEEeCCChhHHHHHHHhcCC--EEEEEECCHHHHHHHHHHHHHc------CCceEEEEccccccc-CCcccEEEE
Confidence 3567899999999999999998543 8999999999999999987533 236888999987653 348999998
Q ss_pred cCCCCCCCC-----C------------CCCcHHHHHHHHhhccCCcEEEEEecC
Q 035593 156 DLFSKGSLL-----S------------ELEDPNTWEKLRQCLRKGGRIMVNVGG 192 (269)
Q Consensus 156 d~~~~~~~~-----~------------~l~~~e~~~~~~~~L~pgG~l~~~~~~ 192 (269)
+.+-..... . .....++++.+.+.|+|||.+++....
T Consensus 89 n~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lk~gG~~~~~~~~ 142 (179)
T TIGR00537 89 NPPYLPLEDDLRRGDWLDVAIDGGKDGRKVIDRFLDELPEILKEGGRVQLIQSS 142 (179)
T ss_pred CCCCCCCcchhcccchhhhhhhcCCchHHHHHHHHHhHHHhhCCCCEEEEEEec
Confidence 753221100 0 001357899999999999999887644
No 60
>TIGR00477 tehB tellurite resistance protein TehB. Part of a tellurite-reducing operon tehA and tehB
Probab=99.41 E-value=1.9e-12 Score=108.20 Aligned_cols=106 Identities=18% Similarity=0.207 Sum_probs=78.0
Q ss_pred CCCCCcEEEEcCcccHHHHHHHHHCCCceEEEEECChHHHHHHHHhcCccccccCCCCcEEEEEccccccccCCCeeEEE
Q 035593 75 ILPPGPIGILGFGAGSAARLILDLYPEAVIHGWELDPSVIKVAREFFALEKLEKSYPDRLFVYVGNALKASLKDGFSGIL 154 (269)
Q Consensus 75 l~~~~~VL~iG~G~G~~~~~l~~~~p~~~v~~vEidp~~~~~a~~~~~~~~~~~~~~~rv~~~~~D~~~~~~~~~yD~I~ 154 (269)
..++.+|||+|||+|.++.++++ .+.+|+++|+++.+++.+++...... -++++...|.......++||+|+
T Consensus 28 ~~~~~~vLDiGcG~G~~a~~la~--~g~~V~~iD~s~~~l~~a~~~~~~~~------~~v~~~~~d~~~~~~~~~fD~I~ 99 (195)
T TIGR00477 28 TVAPCKTLDLGCGQGRNSLYLSL--AGYDVRAWDHNPASIASVLDMKAREN------LPLRTDAYDINAAALNEDYDFIF 99 (195)
T ss_pred cCCCCcEEEeCCCCCHHHHHHHH--CCCeEEEEECCHHHHHHHHHHHHHhC------CCceeEeccchhccccCCCCEEE
Confidence 34578999999999999999997 36799999999999999988764221 23677777876553346899998
Q ss_pred EcCCCCCCCCCCCCcHHHHHHHHhhccCCcEEEEEe
Q 035593 155 VDLFSKGSLLSELEDPNTWEKLRQCLRKGGRIMVNV 190 (269)
Q Consensus 155 ~d~~~~~~~~~~l~~~e~~~~~~~~L~pgG~l~~~~ 190 (269)
+...-+ .... -....+++.+++.|+|||.+++..
T Consensus 100 ~~~~~~-~~~~-~~~~~~l~~~~~~LkpgG~lli~~ 133 (195)
T TIGR00477 100 STVVFM-FLQA-GRVPEIIANMQAHTRPGGYNLIVA 133 (195)
T ss_pred Eecccc-cCCH-HHHHHHHHHHHHHhCCCcEEEEEE
Confidence 743211 1111 123589999999999999855543
No 61
>PRK00377 cbiT cobalt-precorrin-6Y C(15)-methyltransferase; Provisional
Probab=99.41 E-value=5.5e-12 Score=105.63 Aligned_cols=107 Identities=18% Similarity=0.188 Sum_probs=84.5
Q ss_pred CCCCCCcEEEEcCcccHHHHHHHHHC-CCceEEEEECChHHHHHHHHhcCccccccCCCCcEEEEEcccccc--ccCCCe
Q 035593 74 PILPPGPIGILGFGAGSAARLILDLY-PEAVIHGWELDPSVIKVAREFFALEKLEKSYPDRLFVYVGNALKA--SLKDGF 150 (269)
Q Consensus 74 ~l~~~~~VL~iG~G~G~~~~~l~~~~-p~~~v~~vEidp~~~~~a~~~~~~~~~~~~~~~rv~~~~~D~~~~--~~~~~y 150 (269)
.+.+..+|||+|||+|.++..+++.. +..+|+++|+++.+++.|++++.... ...+++++.+|+.++ ...++|
T Consensus 37 ~~~~~~~vlDlG~GtG~~s~~~a~~~~~~~~v~avD~~~~~~~~a~~n~~~~g----~~~~v~~~~~d~~~~l~~~~~~~ 112 (198)
T PRK00377 37 RLRKGDMILDIGCGTGSVTVEASLLVGETGKVYAVDKDEKAINLTRRNAEKFG----VLNNIVLIKGEAPEILFTINEKF 112 (198)
T ss_pred CCCCcCEEEEeCCcCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHhC----CCCCeEEEEechhhhHhhcCCCC
Confidence 45578899999999999999988754 46799999999999999998864321 025789999999875 334689
Q ss_pred eEEEEcCCCCCCCCCCCCcHHHHHHHHhhccCCcEEEEEec
Q 035593 151 SGILVDLFSKGSLLSELEDPNTWEKLRQCLRKGGRIMVNVG 191 (269)
Q Consensus 151 D~I~~d~~~~~~~~~~l~~~e~~~~~~~~L~pgG~l~~~~~ 191 (269)
|+|+++.... ...++++.+.+.|+|||.+++...
T Consensus 113 D~V~~~~~~~-------~~~~~l~~~~~~LkpgG~lv~~~~ 146 (198)
T PRK00377 113 DRIFIGGGSE-------KLKEIISASWEIIKKGGRIVIDAI 146 (198)
T ss_pred CEEEECCCcc-------cHHHHHHHHHHHcCCCcEEEEEee
Confidence 9999854211 136899999999999999998664
No 62
>PRK11036 putative S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=99.40 E-value=1.6e-12 Score=113.15 Aligned_cols=107 Identities=18% Similarity=0.154 Sum_probs=84.2
Q ss_pred CCCCcEEEEcCcccHHHHHHHHHCCCceEEEEECChHHHHHHHHhcCccccccCCCCcEEEEEcccccc--ccCCCeeEE
Q 035593 76 LPPGPIGILGFGAGSAARLILDLYPEAVIHGWELDPSVIKVAREFFALEKLEKSYPDRLFVYVGNALKA--SLKDGFSGI 153 (269)
Q Consensus 76 ~~~~~VL~iG~G~G~~~~~l~~~~p~~~v~~vEidp~~~~~a~~~~~~~~~~~~~~~rv~~~~~D~~~~--~~~~~yD~I 153 (269)
.++.+|||+|||+|.++..+++. +.+|+++|+++++++.|+++..... ..++++++++|+.+. ...++||+|
T Consensus 43 ~~~~~vLDiGcG~G~~a~~la~~--g~~v~~vD~s~~~l~~a~~~~~~~g----~~~~v~~~~~d~~~l~~~~~~~fD~V 116 (255)
T PRK11036 43 PRPLRVLDAGGGEGQTAIKLAEL--GHQVILCDLSAEMIQRAKQAAEAKG----VSDNMQFIHCAAQDIAQHLETPVDLI 116 (255)
T ss_pred CCCCEEEEeCCCchHHHHHHHHc--CCEEEEEECCHHHHHHHHHHHHhcC----CccceEEEEcCHHHHhhhcCCCCCEE
Confidence 35789999999999999999884 6799999999999999998864322 135799999999876 346789999
Q ss_pred EEcCCCCCCCCCCC-CcHHHHHHHHhhccCCcEEEEEecCC
Q 035593 154 LVDLFSKGSLLSEL-EDPNTWEKLRQCLRKGGRIMVNVGGS 193 (269)
Q Consensus 154 ~~d~~~~~~~~~~l-~~~e~~~~~~~~L~pgG~l~~~~~~~ 193 (269)
++...- .++ ....+++.+.+.|||||++++..++.
T Consensus 117 ~~~~vl-----~~~~~~~~~l~~~~~~LkpgG~l~i~~~n~ 152 (255)
T PRK11036 117 LFHAVL-----EWVADPKSVLQTLWSVLRPGGALSLMFYNA 152 (255)
T ss_pred EehhHH-----HhhCCHHHHHHHHHHHcCCCeEEEEEEECc
Confidence 974321 111 13589999999999999998766543
No 63
>TIGR00740 methyltransferase, putative. A simple BLAST search finds all members of this family and weaker hits to a large number of known and predicted methyltransferases. A single iteration with PSI-BLAST, keeping only clear members of the family, leads to a large number of highly significant hits to a set of known and predicted methyltransferases with a large repertoire of different specifities. This model is restricted to a subfamily found so far only in the Proteobacteria, sharing consistent length, full-length homology, and on average better than 35 % identity. It is reasonable to predict equivalent function within this subfamily.
Probab=99.40 E-value=4.8e-12 Score=109.01 Aligned_cols=108 Identities=14% Similarity=0.154 Sum_probs=82.2
Q ss_pred CCCCcEEEEcCcccHHHHHHHHHC--CCceEEEEECChHHHHHHHHhcCccccccCCCCcEEEEEccccccccCCCeeEE
Q 035593 76 LPPGPIGILGFGAGSAARLILDLY--PEAVIHGWELDPSVIKVAREFFALEKLEKSYPDRLFVYVGNALKASLKDGFSGI 153 (269)
Q Consensus 76 ~~~~~VL~iG~G~G~~~~~l~~~~--p~~~v~~vEidp~~~~~a~~~~~~~~~~~~~~~rv~~~~~D~~~~~~~~~yD~I 153 (269)
.+..+|||||||+|..+..+++++ |+.+++++|+++.|++.|++++.... ...+++++++|+.++.. +.+|+|
T Consensus 52 ~~~~~iLDlGcG~G~~~~~l~~~~~~p~~~v~gvD~s~~ml~~a~~~~~~~~----~~~~v~~~~~d~~~~~~-~~~d~v 126 (239)
T TIGR00740 52 TPDSNVYDLGCSRGAATLSARRNINQPNVKIIGIDNSQPMVERCRQHIAAYH----SEIPVEILCNDIRHVEI-KNASMV 126 (239)
T ss_pred CCCCEEEEecCCCCHHHHHHHHhcCCCCCeEEEEeCCHHHHHHHHHHHHhcC----CCCCeEEEECChhhCCC-CCCCEE
Confidence 367799999999999999998864 68999999999999999999864211 13579999999988733 358988
Q ss_pred EEcCCCCCCCCCCCCcHHHHHHHHhhccCCcEEEEEe
Q 035593 154 LVDLFSKGSLLSELEDPNTWEKLRQCLRKGGRIMVNV 190 (269)
Q Consensus 154 ~~d~~~~~~~~~~l~~~e~~~~~~~~L~pgG~l~~~~ 190 (269)
++...-+ ...+ -....++++++++|+|||.+++.-
T Consensus 127 ~~~~~l~-~~~~-~~~~~~l~~i~~~LkpgG~l~i~d 161 (239)
T TIGR00740 127 ILNFTLQ-FLPP-EDRIALLTKIYEGLNPNGVLVLSE 161 (239)
T ss_pred eeecchh-hCCH-HHHHHHHHHHHHhcCCCeEEEEee
Confidence 7643211 1110 013589999999999999998864
No 64
>COG2521 Predicted archaeal methyltransferase [General function prediction only]
Probab=99.40 E-value=1.2e-12 Score=109.18 Aligned_cols=149 Identities=21% Similarity=0.254 Sum_probs=113.2
Q ss_pred ccchHHHHHhcCCCC--CCCCcEEEEcCcccHHHHHHHHHCCCceEEEEECChHHHHHHHHhcCcccccc-CCCCcEEEE
Q 035593 61 LTNTYFDAFATLPPI--LPPGPIGILGFGAGSAARLILDLYPEAVIHGWELDPSVIKVAREFFALEKLEK-SYPDRLFVY 137 (269)
Q Consensus 61 l~~~y~~~~~~~~~l--~~~~~VL~iG~G~G~~~~~l~~~~p~~~v~~vEidp~~~~~a~~~~~~~~~~~-~~~~rv~~~ 137 (269)
...++.+...-.... ....+|||.+.|-|..+...+++ ...+|..||.||.++++|+- ++|.. ....+++++
T Consensus 116 ~tdP~~Dt~~Kv~~V~~~~G~rVLDtC~GLGYtAi~a~~r-GA~~VitvEkdp~VLeLa~l----NPwSr~l~~~~i~ii 190 (287)
T COG2521 116 GTDPLEDTLAKVELVKVKRGERVLDTCTGLGYTAIEALER-GAIHVITVEKDPNVLELAKL----NPWSRELFEIAIKII 190 (287)
T ss_pred CcCcHHHHHhhhheeccccCCEeeeeccCccHHHHHHHHc-CCcEEEEEeeCCCeEEeecc----CCCCccccccccEEe
Confidence 345566666433333 34889999999999999999883 23499999999999999864 34431 234579999
Q ss_pred Ecccccc---ccCCCeeEEEEcCCCCCCCCCCCCcHHHHHHHHhhccCCcEEEEEecCCCccccccccchhHHHHHHHHH
Q 035593 138 VGNALKA---SLKDGFSGILVDLFSKGSLLSELEDPNTWEKLRQCLRKGGRIMVNVGGSCVEAEDSRRDGKVVMEATLKA 214 (269)
Q Consensus 138 ~~D~~~~---~~~~~yD~I~~d~~~~~~~~~~l~~~e~~~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 214 (269)
.||+.++ ..++.||+|+.|.+-- +...+|++++||+++++.|+|||.+.-.+..+...+. +....+.+.+.
T Consensus 191 lGD~~e~V~~~~D~sfDaIiHDPPRf-S~AgeLYseefY~El~RiLkrgGrlFHYvG~Pg~ryr-----G~d~~~gVa~R 264 (287)
T COG2521 191 LGDAYEVVKDFDDESFDAIIHDPPRF-SLAGELYSEEFYRELYRILKRGGRLFHYVGNPGKRYR-----GLDLPKGVAER 264 (287)
T ss_pred cccHHHHHhcCCccccceEeeCCCcc-chhhhHhHHHHHHHHHHHcCcCCcEEEEeCCCCcccc-----cCChhHHHHHH
Confidence 9999998 5677899999997543 3445899999999999999999999888877653222 23356788889
Q ss_pred HHHH-hc
Q 035593 215 MHKV-FG 220 (269)
Q Consensus 215 l~~~-F~ 220 (269)
|+++ |.
T Consensus 265 Lr~vGF~ 271 (287)
T COG2521 265 LRRVGFE 271 (287)
T ss_pred HHhcCce
Confidence 9988 73
No 65
>smart00828 PKS_MT Methyltransferase in polyketide synthase (PKS) enzymes.
Probab=99.39 E-value=3.1e-12 Score=108.93 Aligned_cols=105 Identities=16% Similarity=0.283 Sum_probs=82.8
Q ss_pred CcEEEEcCcccHHHHHHHHHCCCceEEEEECChHHHHHHHHhcCccccccCCCCcEEEEEccccccccCCCeeEEEEcCC
Q 035593 79 GPIGILGFGAGSAARLILDLYPEAVIHGWELDPSVIKVAREFFALEKLEKSYPDRLFVYVGNALKASLKDGFSGILVDLF 158 (269)
Q Consensus 79 ~~VL~iG~G~G~~~~~l~~~~p~~~v~~vEidp~~~~~a~~~~~~~~~~~~~~~rv~~~~~D~~~~~~~~~yD~I~~d~~ 158 (269)
++|||||||+|..+..+++.+++.+++++|+++++++.|++++.... ..++++++.+|.......++||+|++...
T Consensus 1 ~~vLDiGcG~G~~~~~la~~~~~~~v~gid~s~~~~~~a~~~~~~~g----l~~~i~~~~~d~~~~~~~~~fD~I~~~~~ 76 (224)
T smart00828 1 KRVLDFGCGYGSDLIDLAERHPHLQLHGYTISPEQAEVGRERIRALG----LQGRIRIFYRDSAKDPFPDTYDLVFGFEV 76 (224)
T ss_pred CeEEEECCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHhcC----CCcceEEEecccccCCCCCCCCEeehHHH
Confidence 47999999999999999998888999999999999999999874322 14589999999865533468999986321
Q ss_pred CCCCCCCCCCcHHHHHHHHhhccCCcEEEEEec
Q 035593 159 SKGSLLSELEDPNTWEKLRQCLRKGGRIMVNVG 191 (269)
Q Consensus 159 ~~~~~~~~l~~~e~~~~~~~~L~pgG~l~~~~~ 191 (269)
-. ... ....+++.+++.|+|||.+++..+
T Consensus 77 l~-~~~---~~~~~l~~~~~~LkpgG~l~i~~~ 105 (224)
T smart00828 77 IH-HIK---DKMDLFSNISRHLKDGGHLVLADF 105 (224)
T ss_pred HH-hCC---CHHHHHHHHHHHcCCCCEEEEEEc
Confidence 11 111 146899999999999999988654
No 66
>COG2518 Pcm Protein-L-isoaspartate carboxylmethyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=99.38 E-value=4.5e-12 Score=105.40 Aligned_cols=104 Identities=22% Similarity=0.291 Sum_probs=83.7
Q ss_pred cCCCCCCCCcEEEEcCcccHHHHHHHHHCCCceEEEEECChHHHHHHHHhcCccccccCCCCcEEEEEcccccc-ccCCC
Q 035593 71 TLPPILPPGPIGILGFGAGSAARLILDLYPEAVIHGWELDPSVIKVAREFFALEKLEKSYPDRLFVYVGNALKA-SLKDG 149 (269)
Q Consensus 71 ~~~~l~~~~~VL~iG~G~G~~~~~l~~~~p~~~v~~vEidp~~~~~a~~~~~~~~~~~~~~~rv~~~~~D~~~~-~~~~~ 149 (269)
.+..+.|..+||+||||+|..+..|++.. .+|+.||++++..+.|++++..-+ -.++.++++|+..- ....+
T Consensus 66 ~~L~~~~g~~VLEIGtGsGY~aAvla~l~--~~V~siEr~~~L~~~A~~~L~~lg-----~~nV~v~~gDG~~G~~~~aP 138 (209)
T COG2518 66 QLLELKPGDRVLEIGTGSGYQAAVLARLV--GRVVSIERIEELAEQARRNLETLG-----YENVTVRHGDGSKGWPEEAP 138 (209)
T ss_pred HHhCCCCCCeEEEECCCchHHHHHHHHHh--CeEEEEEEcHHHHHHHHHHHHHcC-----CCceEEEECCcccCCCCCCC
Confidence 44457789999999999999999999853 399999999999999999875322 34699999999986 66689
Q ss_pred eeEEEEcCCCCCCCCCCCCcHHHHHHHHhhccCCcEEEEEec
Q 035593 150 FSGILVDLFSKGSLLSELEDPNTWEKLRQCLRKGGRIMVNVG 191 (269)
Q Consensus 150 yD~I~~d~~~~~~~~~~l~~~e~~~~~~~~L~pgG~l~~~~~ 191 (269)
||.|++.+..+ ..| +.+.+.|++||++++-+.
T Consensus 139 yD~I~Vtaaa~-~vP---------~~Ll~QL~~gGrlv~PvG 170 (209)
T COG2518 139 YDRIIVTAAAP-EVP---------EALLDQLKPGGRLVIPVG 170 (209)
T ss_pred cCEEEEeeccC-CCC---------HHHHHhcccCCEEEEEEc
Confidence 99999976543 222 234557999999999876
No 67
>PF08242 Methyltransf_12: Methyltransferase domain; InterPro: IPR013217 Methyl transfer from the ubiquitous donor S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] Fatty acid synthase (2.3.1.85 from EC), a biosynthetic enzyme catalysing the formation of long-chain fatty acids Glycine N-methyltransferase (2.1.1.20 from EC) which catalyses the SAM-dependent methylation of glycine to form sarcosine and may play a role in regulating the methylation potential of the cell [] Enniatin synthetase, involved in non-ribosomal biosynthesis of cyclohexadepsipeptidase, enniatin [] Histamine N-methyltransferase (2.1.1.8 from EC), a SAM-dependent histamine-inactivating enzyme [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ].; PDB: 2VZ8_A 2VZ9_A.
Probab=99.38 E-value=1.2e-13 Score=102.51 Aligned_cols=95 Identities=23% Similarity=0.326 Sum_probs=60.0
Q ss_pred EEEcCcccHHHHHHHHHCCCceEEEEECChHHHHHHHHhcCccccccCCCCcEEEEEcccccc---ccCCCeeEEEEcCC
Q 035593 82 GILGFGAGSAARLILDLYPEAVIHGWELDPSVIKVAREFFALEKLEKSYPDRLFVYVGNALKA---SLKDGFSGILVDLF 158 (269)
Q Consensus 82 L~iG~G~G~~~~~l~~~~p~~~v~~vEidp~~~~~a~~~~~~~~~~~~~~~rv~~~~~D~~~~---~~~~~yD~I~~d~~ 158 (269)
||||||+|.++..+++++|..+++++|+||.+++.|++++.... ......+..+..+. ...++||+|++...
T Consensus 1 LdiGcG~G~~~~~l~~~~~~~~~~~~D~s~~~l~~a~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~fD~V~~~~v 75 (99)
T PF08242_consen 1 LDIGCGTGRLLRALLEELPDARYTGVDISPSMLERARERLAELG-----NDNFERLRFDVLDLFDYDPPESFDLVVASNV 75 (99)
T ss_dssp -EESTTTS-TTTTHHHHC-EEEEEEEESSSSTTSTTCCCHHHCT--------EEEEE--SSS---CCC----SEEEEE-T
T ss_pred CEeCccChHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhhcC-----CcceeEEEeecCChhhcccccccceehhhhh
Confidence 79999999999999999999999999999999988888764221 12233333333332 33469999997422
Q ss_pred CCCCCCCCC-CcHHHHHHHHhhccCCcEE
Q 035593 159 SKGSLLSEL-EDPNTWEKLRQCLRKGGRI 186 (269)
Q Consensus 159 ~~~~~~~~l-~~~e~~~~~~~~L~pgG~l 186 (269)
..++ ...++++.+++.|+|||+|
T Consensus 76 -----l~~l~~~~~~l~~~~~~L~pgG~l 99 (99)
T PF08242_consen 76 -----LHHLEDIEAVLRNIYRLLKPGGIL 99 (99)
T ss_dssp -----TS--S-HHHHHHHHTTT-TSS-EE
T ss_pred -----HhhhhhHHHHHHHHHHHcCCCCCC
Confidence 2222 3469999999999999986
No 68
>PRK11188 rrmJ 23S rRNA methyltransferase J; Provisional
Probab=99.38 E-value=1.5e-11 Score=103.88 Aligned_cols=124 Identities=15% Similarity=0.117 Sum_probs=91.6
Q ss_pred CCCCCcEEEEcCcccHHHHHHHHHCC-CceEEEEECChHHHHHHHHhcCccccccCCCCcEEEEEcccccc---------
Q 035593 75 ILPPGPIGILGFGAGSAARLILDLYP-EAVIHGWELDPSVIKVAREFFALEKLEKSYPDRLFVYVGNALKA--------- 144 (269)
Q Consensus 75 l~~~~~VL~iG~G~G~~~~~l~~~~p-~~~v~~vEidp~~~~~a~~~~~~~~~~~~~~~rv~~~~~D~~~~--------- 144 (269)
+.+..+|||||||+|.++..+++..+ ..+|++||+++ + .. .++++++++|+.+.
T Consensus 49 ~~~~~~VLDlG~GtG~~t~~l~~~~~~~~~V~aVDi~~-~-------~~--------~~~v~~i~~D~~~~~~~~~i~~~ 112 (209)
T PRK11188 49 FKPGMTVVDLGAAPGGWSQYAVTQIGDKGRVIACDILP-M-------DP--------IVGVDFLQGDFRDELVLKALLER 112 (209)
T ss_pred CCCCCEEEEEcccCCHHHHHHHHHcCCCceEEEEeccc-c-------cC--------CCCcEEEecCCCChHHHHHHHHH
Confidence 45778999999999999999998764 57999999998 1 01 24589999999874
Q ss_pred ccCCCeeEEEEcCCCCCCCCCCC-------CcHHHHHHHHhhccCCcEEEEEecCCCccccccccchhHHHHHHHHHHHH
Q 035593 145 SLKDGFSGILVDLFSKGSLLSEL-------EDPNTWEKLRQCLRKGGRIMVNVGGSCVEAEDSRRDGKVVMEATLKAMHK 217 (269)
Q Consensus 145 ~~~~~yD~I~~d~~~~~~~~~~l-------~~~e~~~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 217 (269)
...++||+|++|......-.+.. ....+++.+.+.|+|||.+++-++... .+..++..+++
T Consensus 113 ~~~~~~D~V~S~~~~~~~g~~~~d~~~~~~~~~~~L~~~~~~LkpGG~~vi~~~~~~------------~~~~~l~~l~~ 180 (209)
T PRK11188 113 VGDSKVQVVMSDMAPNMSGTPAVDIPRAMYLVELALDMCRDVLAPGGSFVVKVFQGE------------GFDEYLREIRS 180 (209)
T ss_pred hCCCCCCEEecCCCCccCCChHHHHHHHHHHHHHHHHHHHHHcCCCCEEEEEEecCc------------CHHHHHHHHHh
Confidence 23568999999864321110000 024689999999999999999877542 25677888999
Q ss_pred HhcCceEEEE
Q 035593 218 VFGKKLYVLS 227 (269)
Q Consensus 218 ~F~~~v~~~~ 227 (269)
.|. .+.+++
T Consensus 181 ~f~-~v~~~K 189 (209)
T PRK11188 181 LFT-KVKVRK 189 (209)
T ss_pred Cce-EEEEEC
Confidence 995 676664
No 69
>TIGR00536 hemK_fam HemK family putative methylases. The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. Both E. coli and H. influenzae have two members rather than one. The members from the Mycoplasmas have an additional C-terminal domain.
Probab=99.37 E-value=2.9e-11 Score=106.83 Aligned_cols=110 Identities=18% Similarity=0.153 Sum_probs=84.5
Q ss_pred CcEEEEcCcccHHHHHHHHHCCCceEEEEECChHHHHHHHHhcCccccccCCCCcEEEEEccccccccCCCeeEEEEcCC
Q 035593 79 GPIGILGFGAGSAARLILDLYPEAVIHGWELDPSVIKVAREFFALEKLEKSYPDRLFVYVGNALKASLKDGFSGILVDLF 158 (269)
Q Consensus 79 ~~VL~iG~G~G~~~~~l~~~~p~~~v~~vEidp~~~~~a~~~~~~~~~~~~~~~rv~~~~~D~~~~~~~~~yD~I~~d~~ 158 (269)
.+|||+|||+|.++..++..+|+.+|+++|+++++++.|+++..... ...+++++.+|..+.....+||+|+++.+
T Consensus 116 ~~vLDlG~GsG~i~l~la~~~~~~~v~avDis~~al~~a~~n~~~~~----~~~~v~~~~~d~~~~~~~~~fDlIvsNPP 191 (284)
T TIGR00536 116 LHILDLGTGSGCIALALAYEFPNAEVIAVDISPDALAVAEENAEKNQ----LEHRVEFIQSNLFEPLAGQKIDIIVSNPP 191 (284)
T ss_pred CEEEEEeccHhHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcC----CCCcEEEEECchhccCcCCCccEEEECCC
Confidence 68999999999999999998888999999999999999999874322 12469999999876533348999999743
Q ss_pred CCCCC-----------CCC--C--------CcHHHHHHHHhhccCCcEEEEEecC
Q 035593 159 SKGSL-----------LSE--L--------EDPNTWEKLRQCLRKGGRIMVNVGG 192 (269)
Q Consensus 159 ~~~~~-----------~~~--l--------~~~e~~~~~~~~L~pgG~l~~~~~~ 192 (269)
-.... .++ + ....+++.+.+.|+|||++++.+..
T Consensus 192 yi~~~~~~~~~~~~~~eP~~AL~gg~dgl~~~~~ii~~a~~~L~~gG~l~~e~g~ 246 (284)
T TIGR00536 192 YIDEEDLADLPNVVRFEPLLALVGGDDGLNILRQIIELAPDYLKPNGFLVCEIGN 246 (284)
T ss_pred CCCcchhhcCCcccccCcHHHhcCCCcHHHHHHHHHHHHHHhccCCCEEEEEECc
Confidence 22110 000 0 1246788888999999999998854
No 70
>PLN02589 caffeoyl-CoA O-methyltransferase
Probab=99.37 E-value=1.7e-12 Score=111.88 Aligned_cols=102 Identities=16% Similarity=0.121 Sum_probs=86.5
Q ss_pred CCCcEEEEcCcccHHHHHHHHHCC-CceEEEEECChHHHHHHHHhcCccccccCCCCcEEEEEcccccc--c---c---C
Q 035593 77 PPGPIGILGFGAGSAARLILDLYP-EAVIHGWELDPSVIKVAREFFALEKLEKSYPDRLFVYVGNALKA--S---L---K 147 (269)
Q Consensus 77 ~~~~VL~iG~G~G~~~~~l~~~~p-~~~v~~vEidp~~~~~a~~~~~~~~~~~~~~~rv~~~~~D~~~~--~---~---~ 147 (269)
++++||+||+++|..+.++++..| +.+|+++|++++..+.|+++|...+ ..++++++.+|+.+. . . .
T Consensus 79 ~ak~iLEiGT~~GySal~la~al~~~g~v~tiE~~~~~~~~Ar~~~~~ag----~~~~I~~~~G~a~e~L~~l~~~~~~~ 154 (247)
T PLN02589 79 NAKNTMEIGVYTGYSLLATALALPEDGKILAMDINRENYELGLPVIQKAG----VAHKIDFREGPALPVLDQMIEDGKYH 154 (247)
T ss_pred CCCEEEEEeChhhHHHHHHHhhCCCCCEEEEEeCCHHHHHHHHHHHHHCC----CCCceEEEeccHHHHHHHHHhccccC
Confidence 589999999999999999998765 7899999999999999999985433 146899999999886 1 1 3
Q ss_pred CCeeEEEEcCCCCCCCCCCCCcHHHHHHHHhhccCCcEEEEE
Q 035593 148 DGFSGILVDLFSKGSLLSELEDPNTWEKLRQCLRKGGRIMVN 189 (269)
Q Consensus 148 ~~yD~I~~d~~~~~~~~~~l~~~e~~~~~~~~L~pgG~l~~~ 189 (269)
++||+||+|+.... ..++|+.+.+.|+|||++++.
T Consensus 155 ~~fD~iFiDadK~~-------Y~~y~~~~l~ll~~GGviv~D 189 (247)
T PLN02589 155 GTFDFIFVDADKDN-------YINYHKRLIDLVKVGGVIGYD 189 (247)
T ss_pred CcccEEEecCCHHH-------hHHHHHHHHHhcCCCeEEEEc
Confidence 68999999986432 468999999999999999884
No 71
>PRK10258 biotin biosynthesis protein BioC; Provisional
Probab=99.37 E-value=6.6e-12 Score=108.86 Aligned_cols=101 Identities=16% Similarity=0.111 Sum_probs=80.7
Q ss_pred CCCcEEEEcCcccHHHHHHHHHCCCceEEEEECChHHHHHHHHhcCccccccCCCCcEEEEEcccccc-ccCCCeeEEEE
Q 035593 77 PPGPIGILGFGAGSAARLILDLYPEAVIHGWELDPSVIKVAREFFALEKLEKSYPDRLFVYVGNALKA-SLKDGFSGILV 155 (269)
Q Consensus 77 ~~~~VL~iG~G~G~~~~~l~~~~p~~~v~~vEidp~~~~~a~~~~~~~~~~~~~~~rv~~~~~D~~~~-~~~~~yD~I~~ 155 (269)
++.+|||||||+|.++..+.+ .+.+++++|+++.+++.|+++.. ...++++|+... ...++||+|++
T Consensus 42 ~~~~vLDiGcG~G~~~~~l~~--~~~~v~~~D~s~~~l~~a~~~~~----------~~~~~~~d~~~~~~~~~~fD~V~s 109 (251)
T PRK10258 42 KFTHVLDAGCGPGWMSRYWRE--RGSQVTALDLSPPMLAQARQKDA----------ADHYLAGDIESLPLATATFDLAWS 109 (251)
T ss_pred CCCeEEEeeCCCCHHHHHHHH--cCCeEEEEECCHHHHHHHHhhCC----------CCCEEEcCcccCcCCCCcEEEEEE
Confidence 468999999999999998876 46899999999999999998752 246788998877 45668999997
Q ss_pred cCCCCCCCCCCCCcHHHHHHHHhhccCCcEEEEEecCC
Q 035593 156 DLFSKGSLLSELEDPNTWEKLRQCLRKGGRIMVNVGGS 193 (269)
Q Consensus 156 d~~~~~~~~~~l~~~e~~~~~~~~L~pgG~l~~~~~~~ 193 (269)
...-.. . -...+++.++.+.|+|||.+++..+..
T Consensus 110 ~~~l~~-~---~d~~~~l~~~~~~Lk~gG~l~~~~~~~ 143 (251)
T PRK10258 110 NLAVQW-C---GNLSTALRELYRVVRPGGVVAFTTLVQ 143 (251)
T ss_pred Cchhhh-c---CCHHHHHHHHHHHcCCCeEEEEEeCCC
Confidence 543211 1 124689999999999999999987654
No 72
>PRK14966 unknown domain/N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase fusion protein; Provisional
Probab=99.37 E-value=3e-11 Score=110.57 Aligned_cols=110 Identities=19% Similarity=0.186 Sum_probs=83.0
Q ss_pred CCCCcEEEEcCcccHHHHHHHHHCCCceEEEEECChHHHHHHHHhcCccccccCCCCcEEEEEcccccc--ccCCCeeEE
Q 035593 76 LPPGPIGILGFGAGSAARLILDLYPEAVIHGWELDPSVIKVAREFFALEKLEKSYPDRLFVYVGNALKA--SLKDGFSGI 153 (269)
Q Consensus 76 ~~~~~VL~iG~G~G~~~~~l~~~~p~~~v~~vEidp~~~~~a~~~~~~~~~~~~~~~rv~~~~~D~~~~--~~~~~yD~I 153 (269)
.+..+|||||||+|.++..+++..|+.+|+++|+|+++++.|+++.... ..+++++.+|..+. ...++||+|
T Consensus 250 ~~~~rVLDLGcGSG~IaiaLA~~~p~a~VtAVDiS~~ALe~AreNa~~~------g~rV~fi~gDl~e~~l~~~~~FDLI 323 (423)
T PRK14966 250 PENGRVWDLGTGSGAVAVTVALERPDAFVRASDISPPALETARKNAADL------GARVEFAHGSWFDTDMPSEGKWDII 323 (423)
T ss_pred CCCCEEEEEeChhhHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHc------CCcEEEEEcchhccccccCCCccEE
Confidence 3567999999999999999998788999999999999999999987532 24799999998764 234589999
Q ss_pred EEcCCCCCCC----C-------CC--C--------CcHHHHHHHHhhccCCcEEEEEec
Q 035593 154 LVDLFSKGSL----L-------SE--L--------EDPNTWEKLRQCLRKGGRIMVNVG 191 (269)
Q Consensus 154 ~~d~~~~~~~----~-------~~--l--------~~~e~~~~~~~~L~pgG~l~~~~~ 191 (269)
+++.+-.... . |+ + ....+++.+.++|+|||.+++-+.
T Consensus 324 VSNPPYI~~~e~~l~~~~v~~EP~~AL~gG~dGL~~yr~Ii~~a~~~LkpgG~lilEiG 382 (423)
T PRK14966 324 VSNPPYIENGDKHLLQGDLRFEPQIALTDFSDGLSCIRTLAQGAPDRLAEGGFLLLEHG 382 (423)
T ss_pred EECCCCCCcchhhhcchhhhcCHHHHhhCCCchHHHHHHHHHHHHHhcCCCcEEEEEEC
Confidence 9986421110 0 00 1 013566666789999999987664
No 73
>PRK14121 tRNA (guanine-N(7)-)-methyltransferase; Provisional
Probab=99.37 E-value=1.2e-11 Score=112.59 Aligned_cols=109 Identities=15% Similarity=0.159 Sum_probs=89.3
Q ss_pred CCcEEEEcCcccHHHHHHHHHCCCceEEEEECChHHHHHHHHhcCccccccCCCCcEEEEEcccccc---ccCCCeeEEE
Q 035593 78 PGPIGILGFGAGSAARLILDLYPEAVIHGWELDPSVIKVAREFFALEKLEKSYPDRLFVYVGNALKA---SLKDGFSGIL 154 (269)
Q Consensus 78 ~~~VL~iG~G~G~~~~~l~~~~p~~~v~~vEidp~~~~~a~~~~~~~~~~~~~~~rv~~~~~D~~~~---~~~~~yD~I~ 154 (269)
...+||||||+|..+..+++..|+..++|+|+++.+++.|.+.....+ -.++.++.+|++.+ ...+.+|.|+
T Consensus 123 ~p~vLEIGcGsG~~ll~lA~~~P~~~~iGIEI~~~~i~~a~~ka~~~g-----L~NV~~i~~DA~~ll~~~~~~s~D~I~ 197 (390)
T PRK14121 123 EKILIEIGFGSGRHLLYQAKNNPNKLFIGIEIHTPSIEQVLKQIELLN-----LKNLLIINYDARLLLELLPSNSVEKIF 197 (390)
T ss_pred CCeEEEEcCcccHHHHHHHHhCCCCCEEEEECCHHHHHHHHHHHHHcC-----CCcEEEEECCHHHhhhhCCCCceeEEE
Confidence 458999999999999999999999999999999999999988864332 24799999999875 4567899999
Q ss_pred EcCCCCCCCCC--CCCcHHHHHHHHhhccCCcEEEEEec
Q 035593 155 VDLFSKGSLLS--ELEDPNTWEKLRQCLRKGGRIMVNVG 191 (269)
Q Consensus 155 ~d~~~~~~~~~--~l~~~e~~~~~~~~L~pgG~l~~~~~ 191 (269)
+....++.-.. .+...+|++.+++.|+|||.+.+..-
T Consensus 198 lnFPdPW~KkrHRRlv~~~fL~e~~RvLkpGG~l~l~TD 236 (390)
T PRK14121 198 VHFPVPWDKKPHRRVISEDFLNEALRVLKPGGTLELRTD 236 (390)
T ss_pred EeCCCCccccchhhccHHHHHHHHHHHcCCCcEEEEEEE
Confidence 87555432112 24457999999999999999998774
No 74
>TIGR02072 BioC biotin biosynthesis protein BioC. This enzyme, which is found in biotin biosynthetic gene clusters in proteobacteria, firmicutes, green-sulfur bacteria, fusobacterium and bacteroides, is believed to carry out an enzymatic step prior to the formation of pimeloyl-CoA (although attribution of this annotation is not traceable). The enzyme appears related to methyltransferases by homology.
Probab=99.37 E-value=6.2e-12 Score=107.40 Aligned_cols=104 Identities=19% Similarity=0.306 Sum_probs=85.6
Q ss_pred CCCcEEEEcCcccHHHHHHHHHCCCceEEEEECChHHHHHHHHhcCccccccCCCCcEEEEEcccccc-ccCCCeeEEEE
Q 035593 77 PPGPIGILGFGAGSAARLILDLYPEAVIHGWELDPSVIKVAREFFALEKLEKSYPDRLFVYVGNALKA-SLKDGFSGILV 155 (269)
Q Consensus 77 ~~~~VL~iG~G~G~~~~~l~~~~p~~~v~~vEidp~~~~~a~~~~~~~~~~~~~~~rv~~~~~D~~~~-~~~~~yD~I~~ 155 (269)
.+.+|||||||+|.++..+++..+..+++++|+++.+++.+++.+. ++++++.+|+.+. ...++||+|++
T Consensus 34 ~~~~vLDlG~G~G~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~~---------~~~~~~~~d~~~~~~~~~~fD~vi~ 104 (240)
T TIGR02072 34 IPASVLDIGCGTGYLTRALLKRFPQAEFIALDISAGMLAQAKTKLS---------ENVQFICGDAEKLPLEDSSFDLIVS 104 (240)
T ss_pred CCCeEEEECCCccHHHHHHHHhCCCCcEEEEeChHHHHHHHHHhcC---------CCCeEEecchhhCCCCCCceeEEEE
Confidence 3578999999999999999998888899999999999999998764 3688999999887 45678999997
Q ss_pred cCCCCCCCCCCCCcHHHHHHHHhhccCCcEEEEEecCC
Q 035593 156 DLFSKGSLLSELEDPNTWEKLRQCLRKGGRIMVNVGGS 193 (269)
Q Consensus 156 d~~~~~~~~~~l~~~e~~~~~~~~L~pgG~l~~~~~~~ 193 (269)
...-+. . -....+++.+++.|+|||.+++..+..
T Consensus 105 ~~~l~~-~---~~~~~~l~~~~~~L~~~G~l~~~~~~~ 138 (240)
T TIGR02072 105 NLALQW-C---DDLSQALSELARVLKPGGLLAFSTFGP 138 (240)
T ss_pred hhhhhh-c---cCHHHHHHHHHHHcCCCcEEEEEeCCc
Confidence 643221 1 124689999999999999999887544
No 75
>PRK09328 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=99.36 E-value=7.4e-11 Score=103.43 Aligned_cols=112 Identities=21% Similarity=0.263 Sum_probs=85.7
Q ss_pred CCCCCcEEEEcCcccHHHHHHHHHCCCceEEEEECChHHHHHHHHhcCccccccCCCCcEEEEEccccccccCCCeeEEE
Q 035593 75 ILPPGPIGILGFGAGSAARLILDLYPEAVIHGWELDPSVIKVAREFFALEKLEKSYPDRLFVYVGNALKASLKDGFSGIL 154 (269)
Q Consensus 75 l~~~~~VL~iG~G~G~~~~~l~~~~p~~~v~~vEidp~~~~~a~~~~~~~~~~~~~~~rv~~~~~D~~~~~~~~~yD~I~ 154 (269)
..++.+|||+|||+|.++..+++..|..+++++|+++.+++.|++++... ...+++++.+|+......++||+|+
T Consensus 106 ~~~~~~vLDiG~GsG~~~~~la~~~~~~~v~~iDis~~~l~~a~~n~~~~-----~~~~i~~~~~d~~~~~~~~~fD~Iv 180 (275)
T PRK09328 106 LKEPLRVLDLGTGSGAIALALAKERPDAEVTAVDISPEALAVARRNAKHG-----LGARVEFLQGDWFEPLPGGRFDLIV 180 (275)
T ss_pred ccCCCEEEEEcCcHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHhC-----CCCcEEEEEccccCcCCCCceeEEE
Confidence 34678999999999999999999888899999999999999999987511 1357999999986543357899999
Q ss_pred EcCCCCCC-----CCCC---------CC--------cHHHHHHHHhhccCCcEEEEEec
Q 035593 155 VDLFSKGS-----LLSE---------LE--------DPNTWEKLRQCLRKGGRIMVNVG 191 (269)
Q Consensus 155 ~d~~~~~~-----~~~~---------l~--------~~e~~~~~~~~L~pgG~l~~~~~ 191 (269)
++.+-... ..+. +. ...+++.+.+.|+|||.+++...
T Consensus 181 ~npPy~~~~~~~~~~~~v~~~ep~~al~~g~~g~~~~~~~~~~~~~~Lk~gG~l~~e~g 239 (275)
T PRK09328 181 SNPPYIPEADIHLLQPEVRDHEPHLALFGGEDGLDFYRRIIEQAPRYLKPGGWLLLEIG 239 (275)
T ss_pred ECCCcCCcchhhhCCchhhhcCCchhhcCCCCHHHHHHHHHHHHHHhcccCCEEEEEEC
Confidence 87432110 0000 11 14677888899999999999763
No 76
>TIGR03704 PrmC_rel_meth putative protein-(glutamine-N5) methyltransferase, unknown substrate-specific. This protein family is closely related to two different families of protein-(glutamine-N5) methyltransferase. The first is PrmB, which modifies ribosomal protein L3 in some bacteria. The second is PrmC (HemK), which modifies peptide chain release factors 1 and 2 in most bacteria and also in eukaryotes. The glutamine side chain-binding motif NPPY shared by PrmB and PrmC is N[VAT]PY in this family. The protein substrate is unknown.
Probab=99.36 E-value=2.4e-11 Score=105.43 Aligned_cols=106 Identities=17% Similarity=0.189 Sum_probs=81.1
Q ss_pred CCcEEEEcCcccHHHHHHHHHCCCceEEEEECChHHHHHHHHhcCccccccCCCCcEEEEEcccccc-c--cCCCeeEEE
Q 035593 78 PGPIGILGFGAGSAARLILDLYPEAVIHGWELDPSVIKVAREFFALEKLEKSYPDRLFVYVGNALKA-S--LKDGFSGIL 154 (269)
Q Consensus 78 ~~~VL~iG~G~G~~~~~l~~~~p~~~v~~vEidp~~~~~a~~~~~~~~~~~~~~~rv~~~~~D~~~~-~--~~~~yD~I~ 154 (269)
+.+|||+|||+|.++..+++..++.+|+++|+|+.+++.|++++... +++++.+|..+. . ..++||+|+
T Consensus 87 ~~~vLDlg~GsG~i~l~la~~~~~~~v~~vDis~~al~~A~~N~~~~--------~~~~~~~D~~~~l~~~~~~~fDlVv 158 (251)
T TIGR03704 87 TLVVVDLCCGSGAVGAALAAALDGIELHAADIDPAAVRCARRNLADA--------GGTVHEGDLYDALPTALRGRVDILA 158 (251)
T ss_pred CCEEEEecCchHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHc--------CCEEEEeechhhcchhcCCCEeEEE
Confidence 45899999999999999998888889999999999999999987532 257899998765 2 235799999
Q ss_pred EcCCCCCC-----CCC----C-----CC--------cHHHHHHHHhhccCCcEEEEEec
Q 035593 155 VDLFSKGS-----LLS----E-----LE--------DPNTWEKLRQCLRKGGRIMVNVG 191 (269)
Q Consensus 155 ~d~~~~~~-----~~~----~-----l~--------~~e~~~~~~~~L~pgG~l~~~~~ 191 (269)
+|.+-... .++ + +. ..++++.+.+.|+|||.+++-..
T Consensus 159 ~NPPy~~~~~~~~~~~e~~~~ep~~al~gg~dgl~~~~~i~~~a~~~L~~gG~l~l~~~ 217 (251)
T TIGR03704 159 ANAPYVPTDAIALMPPEARDHEPRVALDGGADGLDVLRRVAAGAPDWLAPGGHLLVETS 217 (251)
T ss_pred ECCCCCCchhhhcCCHHHHhCCCHHHhcCCCcHHHHHHHHHHHHHHhcCCCCEEEEEEC
Confidence 98642210 000 0 10 24777888899999999998764
No 77
>TIGR03534 RF_mod_PrmC protein-(glutamine-N5) methyltransferase, release factor-specific. Members of this protein family are HemK (PrmC), a protein once thought to be involved in heme biosynthesis but now recognized to be a protein-glutamine methyltransferase that modifies the peptide chain release factors. All members of the seed alignment are encoded next to the release factor 1 gene (prfA) and confirmed by phylogenetic analysis. SIMBAL analysis (manuscript in prep.) shows the motif [LIV]PRx[DE]TE (in Escherichia coli, IPRPDTE) confers specificity for the release factors rather than for ribosomal protein L3.
Probab=99.35 E-value=3.7e-11 Score=103.78 Aligned_cols=110 Identities=20% Similarity=0.233 Sum_probs=85.4
Q ss_pred CCCcEEEEcCcccHHHHHHHHHCCCceEEEEECChHHHHHHHHhcCccccccCCCCcEEEEEccccccccCCCeeEEEEc
Q 035593 77 PPGPIGILGFGAGSAARLILDLYPEAVIHGWELDPSVIKVAREFFALEKLEKSYPDRLFVYVGNALKASLKDGFSGILVD 156 (269)
Q Consensus 77 ~~~~VL~iG~G~G~~~~~l~~~~p~~~v~~vEidp~~~~~a~~~~~~~~~~~~~~~rv~~~~~D~~~~~~~~~yD~I~~d 156 (269)
.+.+|||+|||+|..+..+++.+|+.+++++|+++.+++.|++++.... -++++++.+|+.+....++||+|+++
T Consensus 87 ~~~~ilDig~G~G~~~~~l~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~-----~~~~~~~~~d~~~~~~~~~fD~Vi~n 161 (251)
T TIGR03534 87 GPLRVLDLGTGSGAIALALAKERPDARVTAVDISPEALAVARKNAARLG-----LDNVTFLQSDWFEPLPGGKFDLIVSN 161 (251)
T ss_pred CCCeEEEEeCcHhHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcC-----CCeEEEEECchhccCcCCceeEEEEC
Confidence 3568999999999999999998888999999999999999998875332 23699999999876446789999987
Q ss_pred CCCCCC-----CCCCCC-----------------cHHHHHHHHhhccCCcEEEEEec
Q 035593 157 LFSKGS-----LLSELE-----------------DPNTWEKLRQCLRKGGRIMVNVG 191 (269)
Q Consensus 157 ~~~~~~-----~~~~l~-----------------~~e~~~~~~~~L~pgG~l~~~~~ 191 (269)
.+-... ...... ...+++.+.+.|+|||.+++...
T Consensus 162 pPy~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~i~~~~~~L~~gG~~~~~~~ 218 (251)
T TIGR03534 162 PPYIPEADIHLLDPEVRFHEPRLALFGGEDGLDFYRRIIAQAPRLLKPGGWLLLEIG 218 (251)
T ss_pred CCCCchhhhhhcChhhhhcCCHHHHcCCCcHHHHHHHHHHHHHHhcccCCEEEEEEC
Confidence 532210 000000 13678999999999999998763
No 78
>PLN02336 phosphoethanolamine N-methyltransferase
Probab=99.35 E-value=1.7e-11 Score=115.86 Aligned_cols=106 Identities=16% Similarity=0.235 Sum_probs=84.3
Q ss_pred CCCCCcEEEEcCcccHHHHHHHHHCCCceEEEEECChHHHHHHHHhcCccccccCCCCcEEEEEcccccc-ccCCCeeEE
Q 035593 75 ILPPGPIGILGFGAGSAARLILDLYPEAVIHGWELDPSVIKVAREFFALEKLEKSYPDRLFVYVGNALKA-SLKDGFSGI 153 (269)
Q Consensus 75 l~~~~~VL~iG~G~G~~~~~l~~~~p~~~v~~vEidp~~~~~a~~~~~~~~~~~~~~~rv~~~~~D~~~~-~~~~~yD~I 153 (269)
+.++.+|||||||+|.++..+++.+ +.+|+++|+++.+++.|+++.... ..+++++.+|+... ...++||+|
T Consensus 264 ~~~~~~vLDiGcG~G~~~~~la~~~-~~~v~gvDiS~~~l~~A~~~~~~~------~~~v~~~~~d~~~~~~~~~~fD~I 336 (475)
T PLN02336 264 LKPGQKVLDVGCGIGGGDFYMAENF-DVHVVGIDLSVNMISFALERAIGR------KCSVEFEVADCTKKTYPDNSFDVI 336 (475)
T ss_pred CCCCCEEEEEeccCCHHHHHHHHhc-CCEEEEEECCHHHHHHHHHHhhcC------CCceEEEEcCcccCCCCCCCEEEE
Confidence 3457799999999999999998865 789999999999999999875311 35799999998876 345789999
Q ss_pred EEcCCCCCCCCCCC-CcHHHHHHHHhhccCCcEEEEEecC
Q 035593 154 LVDLFSKGSLLSEL-EDPNTWEKLRQCLRKGGRIMVNVGG 192 (269)
Q Consensus 154 ~~d~~~~~~~~~~l-~~~e~~~~~~~~L~pgG~l~~~~~~ 192 (269)
++... ..|+ ....+++++++.|+|||.+++..+.
T Consensus 337 ~s~~~-----l~h~~d~~~~l~~~~r~LkpgG~l~i~~~~ 371 (475)
T PLN02336 337 YSRDT-----ILHIQDKPALFRSFFKWLKPGGKVLISDYC 371 (475)
T ss_pred EECCc-----ccccCCHHHHHHHHHHHcCCCeEEEEEEec
Confidence 97421 1111 2468999999999999999987653
No 79
>PRK08317 hypothetical protein; Provisional
Probab=99.34 E-value=2e-11 Score=104.19 Aligned_cols=112 Identities=21% Similarity=0.250 Sum_probs=87.0
Q ss_pred HhcCCCCCCCCcEEEEcCcccHHHHHHHHHC-CCceEEEEECChHHHHHHHHhcCccccccCCCCcEEEEEcccccc-cc
Q 035593 69 FATLPPILPPGPIGILGFGAGSAARLILDLY-PEAVIHGWELDPSVIKVAREFFALEKLEKSYPDRLFVYVGNALKA-SL 146 (269)
Q Consensus 69 ~~~~~~l~~~~~VL~iG~G~G~~~~~l~~~~-p~~~v~~vEidp~~~~~a~~~~~~~~~~~~~~~rv~~~~~D~~~~-~~ 146 (269)
+.....+.++.+|||+|||+|.++..+++++ |..+++++|+++.+++.|+++.... .++++++.+|+... ..
T Consensus 11 ~~~~~~~~~~~~vLdiG~G~G~~~~~~a~~~~~~~~v~~~d~~~~~~~~a~~~~~~~------~~~~~~~~~d~~~~~~~ 84 (241)
T PRK08317 11 TFELLAVQPGDRVLDVGCGPGNDARELARRVGPEGRVVGIDRSEAMLALAKERAAGL------GPNVEFVRGDADGLPFP 84 (241)
T ss_pred HHHHcCCCCCCEEEEeCCCCCHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHhhCC------CCceEEEecccccCCCC
Confidence 3333345678899999999999999999877 6789999999999999999873211 35799999998876 45
Q ss_pred CCCeeEEEEcCCCCCCCCCCCCcHHHHHHHHhhccCCcEEEEEe
Q 035593 147 KDGFSGILVDLFSKGSLLSELEDPNTWEKLRQCLRKGGRIMVNV 190 (269)
Q Consensus 147 ~~~yD~I~~d~~~~~~~~~~l~~~e~~~~~~~~L~pgG~l~~~~ 190 (269)
.++||+|++...-.. . -....+++.+.+.|+|||.+++..
T Consensus 85 ~~~~D~v~~~~~~~~-~---~~~~~~l~~~~~~L~~gG~l~~~~ 124 (241)
T PRK08317 85 DGSFDAVRSDRVLQH-L---EDPARALAEIARVLRPGGRVVVLD 124 (241)
T ss_pred CCCceEEEEechhhc-c---CCHHHHHHHHHHHhcCCcEEEEEe
Confidence 578999997532110 1 124689999999999999998754
No 80
>PF08704 GCD14: tRNA methyltransferase complex GCD14 subunit; InterPro: IPR014816 GCD14 is a subunit of the tRNA methyltransferase complex and is required for 1-methyladenosine modification and maturation of initiator methionyl-tRNA []. ; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity, 0030488 tRNA methylation; PDB: 2YVL_C 1YB2_A 2B25_B 1O54_A 2PWY_B 1I9G_A 3LGA_B 3LHD_C 3MB5_A.
Probab=99.33 E-value=2.7e-11 Score=104.26 Aligned_cols=130 Identities=20% Similarity=0.306 Sum_probs=97.4
Q ss_pred cCCCCCCCCcEEEEcCcccHHHHHHHHH-CCCceEEEEECChHHHHHHHHhcCccccccCCCCcEEEEEcccccc----c
Q 035593 71 TLPPILPPGPIGILGFGAGSAARLILDL-YPEAVIHGWELDPSVIKVAREFFALEKLEKSYPDRLFVYVGNALKA----S 145 (269)
Q Consensus 71 ~~~~l~~~~~VL~iG~G~G~~~~~l~~~-~p~~~v~~vEidp~~~~~a~~~~~~~~~~~~~~~rv~~~~~D~~~~----~ 145 (269)
....+.|..+||+.|.|+|+++.+|++. .|..+|...|+.++.++.|+++|.... ...++++.+.|...- .
T Consensus 34 ~~l~i~pG~~VlEaGtGSG~lt~~l~r~v~p~G~v~t~E~~~~~~~~A~~n~~~~g----l~~~v~~~~~Dv~~~g~~~~ 109 (247)
T PF08704_consen 34 MRLDIRPGSRVLEAGTGSGSLTHALARAVGPTGHVYTYEFREDRAEKARKNFERHG----LDDNVTVHHRDVCEEGFDEE 109 (247)
T ss_dssp HHTT--TT-EEEEE--TTSHHHHHHHHHHTTTSEEEEEESSHHHHHHHHHHHHHTT----CCTTEEEEES-GGCG--STT
T ss_pred HHcCCCCCCEEEEecCCcHHHHHHHHHHhCCCeEEEccccCHHHHHHHHHHHHHcC----CCCCceeEecceeccccccc
Confidence 3345779999999999999999999975 478899999999999999999985432 145899999998753 2
Q ss_pred cCCCeeEEEEcCCCCCCCCCCCCcHHHHHHHHhhc-cCCcEEEEEecCCCccccccccchhHHHHHHHHHHHHH-hcCce
Q 035593 146 LKDGFSGILVDLFSKGSLLSELEDPNTWEKLRQCL-RKGGRIMVNVGGSCVEAEDSRRDGKVVMEATLKAMHKV-FGKKL 223 (269)
Q Consensus 146 ~~~~yD~I~~d~~~~~~~~~~l~~~e~~~~~~~~L-~pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-F~~~v 223 (269)
....+|+||+|+.+++ +.+..+.++| ++||++++.+ ++- .+...++..|++. |. .+
T Consensus 110 ~~~~~DavfLDlp~Pw---------~~i~~~~~~L~~~gG~i~~fs--P~i----------eQv~~~~~~L~~~gf~-~i 167 (247)
T PF08704_consen 110 LESDFDAVFLDLPDPW---------EAIPHAKRALKKPGGRICCFS--PCI----------EQVQKTVEALREHGFT-DI 167 (247)
T ss_dssp -TTSEEEEEEESSSGG---------GGHHHHHHHE-EEEEEEEEEE--SSH----------HHHHHHHHHHHHTTEE-EE
T ss_pred ccCcccEEEEeCCCHH---------HHHHHHHHHHhcCCceEEEEC--CCH----------HHHHHHHHHHHHCCCe-ee
Confidence 2468999999998764 6888999999 8999999976 442 3567778888874 64 44
Q ss_pred EEE
Q 035593 224 YVL 226 (269)
Q Consensus 224 ~~~ 226 (269)
..+
T Consensus 168 ~~~ 170 (247)
T PF08704_consen 168 ETV 170 (247)
T ss_dssp EEE
T ss_pred EEE
Confidence 444
No 81
>PRK11873 arsM arsenite S-adenosylmethyltransferase; Reviewed
Probab=99.33 E-value=1.4e-11 Score=108.01 Aligned_cols=107 Identities=16% Similarity=0.200 Sum_probs=82.8
Q ss_pred CCCCCcEEEEcCcccHHHHHHHHHC-CCceEEEEECChHHHHHHHHhcCccccccCCCCcEEEEEcccccc-ccCCCeeE
Q 035593 75 ILPPGPIGILGFGAGSAARLILDLY-PEAVIHGWELDPSVIKVAREFFALEKLEKSYPDRLFVYVGNALKA-SLKDGFSG 152 (269)
Q Consensus 75 l~~~~~VL~iG~G~G~~~~~l~~~~-p~~~v~~vEidp~~~~~a~~~~~~~~~~~~~~~rv~~~~~D~~~~-~~~~~yD~ 152 (269)
+.+..+|||||||+|..+..+++.. +..+|+++|+++.+++.|++++.... -++++++.+|+.+. ..++.||+
T Consensus 75 ~~~g~~VLDiG~G~G~~~~~~a~~~g~~~~v~gvD~s~~~l~~A~~~~~~~g-----~~~v~~~~~d~~~l~~~~~~fD~ 149 (272)
T PRK11873 75 LKPGETVLDLGSGGGFDCFLAARRVGPTGKVIGVDMTPEMLAKARANARKAG-----YTNVEFRLGEIEALPVADNSVDV 149 (272)
T ss_pred CCCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEECCCHHHHHHHHHHHHHcC-----CCCEEEEEcchhhCCCCCCceeE
Confidence 4468899999999999888777654 45689999999999999998763221 24789999998876 44568999
Q ss_pred EEEcCCCCCCCCCCCCcHHHHHHHHhhccCCcEEEEEe
Q 035593 153 ILVDLFSKGSLLSELEDPNTWEKLRQCLRKGGRIMVNV 190 (269)
Q Consensus 153 I~~d~~~~~~~~~~l~~~e~~~~~~~~L~pgG~l~~~~ 190 (269)
|+++..-+. .+ .....++++.+.|+|||.+++.-
T Consensus 150 Vi~~~v~~~-~~---d~~~~l~~~~r~LkpGG~l~i~~ 183 (272)
T PRK11873 150 IISNCVINL-SP---DKERVFKEAFRVLKPGGRFAISD 183 (272)
T ss_pred EEEcCcccC-CC---CHHHHHHHHHHHcCCCcEEEEEE
Confidence 997643211 11 23689999999999999998854
No 82
>TIGR00406 prmA ribosomal protein L11 methyltransferase. Ribosomal protein L11 methyltransferase is an S-adenosyl-L-methionine-dependent methyltransferase required for the modification of ribosomal protein L11. This protein is found in bacteria and (with a probable transit peptide) in Arabidopsis.
Probab=99.32 E-value=2.4e-11 Score=107.56 Aligned_cols=104 Identities=18% Similarity=0.254 Sum_probs=80.1
Q ss_pred CCCCcEEEEcCcccHHHHHHHHHCCCceEEEEECChHHHHHHHHhcCccccccCCCCcEEEEEccccccccCCCeeEEEE
Q 035593 76 LPPGPIGILGFGAGSAARLILDLYPEAVIHGWELDPSVIKVAREFFALEKLEKSYPDRLFVYVGNALKASLKDGFSGILV 155 (269)
Q Consensus 76 ~~~~~VL~iG~G~G~~~~~l~~~~p~~~v~~vEidp~~~~~a~~~~~~~~~~~~~~~rv~~~~~D~~~~~~~~~yD~I~~ 155 (269)
.+..+|||+|||+|.++..+++ .+..+|+++|+||.+++.|++++..+. ...+++++.+|... ...++||+|++
T Consensus 158 ~~g~~VLDvGcGsG~lai~aa~-~g~~~V~avDid~~al~~a~~n~~~n~----~~~~~~~~~~~~~~-~~~~~fDlVva 231 (288)
T TIGR00406 158 LKDKNVIDVGCGSGILSIAALK-LGAAKVVGIDIDPLAVESARKNAELNQ----VSDRLQVKLIYLEQ-PIEGKADVIVA 231 (288)
T ss_pred CCCCEEEEeCCChhHHHHHHHH-cCCCeEEEEECCHHHHHHHHHHHHHcC----CCcceEEEeccccc-ccCCCceEEEE
Confidence 4678999999999999988886 345699999999999999999875443 13467777776322 23568999998
Q ss_pred cCCCCCCCCCCCCcHHHHHHHHhhccCCcEEEEEecC
Q 035593 156 DLFSKGSLLSELEDPNTWEKLRQCLRKGGRIMVNVGG 192 (269)
Q Consensus 156 d~~~~~~~~~~l~~~e~~~~~~~~L~pgG~l~~~~~~ 192 (269)
+.... . ..+++..+.+.|+|||.+++....
T Consensus 232 n~~~~-----~--l~~ll~~~~~~LkpgG~li~sgi~ 261 (288)
T TIGR00406 232 NILAE-----V--IKELYPQFSRLVKPGGWLILSGIL 261 (288)
T ss_pred ecCHH-----H--HHHHHHHHHHHcCCCcEEEEEeCc
Confidence 65321 1 257899999999999999987654
No 83
>PF01135 PCMT: Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT); InterPro: IPR000682 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (2.1.1.77 from EC) (PCMT) [] (which is also known as L-isoaspartyl protein carboxyl methyltransferase) is an enzyme that catalyses the transfer of a methyl group from S-adenosylmethionine to the free carboxyl groups of D-aspartyl or L-isoaspartyl residues in a variety of peptides and proteins. The enzyme does not act on normal L-aspartyl residues L-isoaspartyl and D-aspartyl are the products of the spontaneous deamidation and/or isomerisation of normal L-aspartyl and L-asparaginyl residues in proteins. PCMT plays a role in the repair and/or degradation of these damaged proteins; the enzymatic methyl esterification of the abnormal residues can lead to their conversion to normal L-aspartyl residues. The SAM domain is present in most of these proteins.; GO: 0004719 protein-L-isoaspartate (D-aspartate) O-methyltransferase activity, 0006464 protein modification process; PDB: 3LBF_A 1DL5_B 1JG3_B 1JG2_A 1JG1_A 1JG4_A 2YXE_A 2PBF_B 1VBF_C 1R18_A ....
Probab=99.32 E-value=4.4e-12 Score=106.86 Aligned_cols=109 Identities=25% Similarity=0.303 Sum_probs=80.6
Q ss_pred HHhcCCCCCCCCcEEEEcCcccHHHHHHHHHCC-CceEEEEECChHHHHHHHHhcCccccccCCCCcEEEEEcccccc-c
Q 035593 68 AFATLPPILPPGPIGILGFGAGSAARLILDLYP-EAVIHGWELDPSVIKVAREFFALEKLEKSYPDRLFVYVGNALKA-S 145 (269)
Q Consensus 68 ~~~~~~~l~~~~~VL~iG~G~G~~~~~l~~~~p-~~~v~~vEidp~~~~~a~~~~~~~~~~~~~~~rv~~~~~D~~~~-~ 145 (269)
.|+.+..+.|..+||+||+|+|..+..+++... ..+|++||++|.+++.|++++.... ..+++++++|+..- .
T Consensus 63 ~~l~~L~l~pg~~VLeIGtGsGY~aAlla~lvg~~g~Vv~vE~~~~l~~~A~~~l~~~~-----~~nv~~~~gdg~~g~~ 137 (209)
T PF01135_consen 63 RMLEALDLKPGDRVLEIGTGSGYQAALLAHLVGPVGRVVSVERDPELAERARRNLARLG-----IDNVEVVVGDGSEGWP 137 (209)
T ss_dssp HHHHHTTC-TT-EEEEES-TTSHHHHHHHHHHSTTEEEEEEESBHHHHHHHHHHHHHHT-----THSEEEEES-GGGTTG
T ss_pred HHHHHHhcCCCCEEEEecCCCcHHHHHHHHhcCccceEEEECccHHHHHHHHHHHHHhc-----cCceeEEEcchhhccc
Confidence 344444578899999999999999999998653 5589999999999999999975322 34799999999876 5
Q ss_pred cCCCeeEEEEcCCCCCCCCCCCCcHHHHHHHHhhccCCcEEEEEec
Q 035593 146 LKDGFSGILVDLFSKGSLLSELEDPNTWEKLRQCLRKGGRIMVNVG 191 (269)
Q Consensus 146 ~~~~yD~I~~d~~~~~~~~~~l~~~e~~~~~~~~L~pgG~l~~~~~ 191 (269)
...+||.|++.+.-. +.-..+.+.|++||++++-+.
T Consensus 138 ~~apfD~I~v~~a~~----------~ip~~l~~qL~~gGrLV~pi~ 173 (209)
T PF01135_consen 138 EEAPFDRIIVTAAVP----------EIPEALLEQLKPGGRLVAPIG 173 (209)
T ss_dssp GG-SEEEEEESSBBS----------S--HHHHHTEEEEEEEEEEES
T ss_pred cCCCcCEEEEeeccc----------hHHHHHHHhcCCCcEEEEEEc
Confidence 667899999875432 222446677999999999775
No 84
>TIGR00438 rrmJ cell division protein FtsJ.
Probab=99.32 E-value=1.3e-10 Score=96.55 Aligned_cols=127 Identities=16% Similarity=0.196 Sum_probs=90.2
Q ss_pred cCCCCCCCCcEEEEcCcccHHHHHHHHHC-CCceEEEEECChHHHHHHHHhcCccccccCCCCcEEEEEcccccc-----
Q 035593 71 TLPPILPPGPIGILGFGAGSAARLILDLY-PEAVIHGWELDPSVIKVAREFFALEKLEKSYPDRLFVYVGNALKA----- 144 (269)
Q Consensus 71 ~~~~l~~~~~VL~iG~G~G~~~~~l~~~~-p~~~v~~vEidp~~~~~a~~~~~~~~~~~~~~~rv~~~~~D~~~~----- 144 (269)
....+.+..+|||||||+|.++..+++.+ +..+|+++|+++.+ . .++++++.+|+.+.
T Consensus 26 ~~~~i~~g~~VLDiG~GtG~~~~~l~~~~~~~~~v~~vDis~~~--------~--------~~~i~~~~~d~~~~~~~~~ 89 (188)
T TIGR00438 26 KFKLIKPGDTVLDLGAAPGGWSQVAVEQVGGKGRVIAVDLQPMK--------P--------IENVDFIRGDFTDEEVLNK 89 (188)
T ss_pred HhcccCCCCEEEEecCCCCHHHHHHHHHhCCCceEEEEeccccc--------c--------CCCceEEEeeCCChhHHHH
Confidence 34456678999999999999999998876 46799999999954 1 13578888888653
Q ss_pred ----ccCCCeeEEEEcCCCCC-CC--CCCCC----cHHHHHHHHhhccCCcEEEEEecCCCccccccccchhHHHHHHHH
Q 035593 145 ----SLKDGFSGILVDLFSKG-SL--LSELE----DPNTWEKLRQCLRKGGRIMVNVGGSCVEAEDSRRDGKVVMEATLK 213 (269)
Q Consensus 145 ----~~~~~yD~I~~d~~~~~-~~--~~~l~----~~e~~~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 213 (269)
...++||+|++|...+. .. ..++. ..++++.+.+.|+|||.+++..+... .+..++.
T Consensus 90 l~~~~~~~~~D~V~~~~~~~~~g~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lvi~~~~~~------------~~~~~l~ 157 (188)
T TIGR00438 90 IRERVGDDKVDVVMSDAAPNISGYWDIDHLRSIDLVELALDIAKEVLKPKGNFVVKVFQGE------------EIDEYLN 157 (188)
T ss_pred HHHHhCCCCccEEEcCCCCCCCCCccccHHHHHHHHHHHHHHHHHHccCCCEEEEEEccCc------------cHHHHHH
Confidence 23457999998753211 11 11111 25789999999999999999765431 2456778
Q ss_pred HHHHHhcCceEEE
Q 035593 214 AMHKVFGKKLYVL 226 (269)
Q Consensus 214 ~l~~~F~~~v~~~ 226 (269)
.++..|. .+...
T Consensus 158 ~l~~~~~-~~~~~ 169 (188)
T TIGR00438 158 ELRKLFE-KVKVT 169 (188)
T ss_pred HHHhhhc-eEEEe
Confidence 8888885 45444
No 85
>PRK14967 putative methyltransferase; Provisional
Probab=99.32 E-value=4.1e-11 Score=102.20 Aligned_cols=110 Identities=14% Similarity=0.046 Sum_probs=82.1
Q ss_pred CCCCCcEEEEcCcccHHHHHHHHHCCCceEEEEECChHHHHHHHHhcCccccccCCCCcEEEEEccccccccCCCeeEEE
Q 035593 75 ILPPGPIGILGFGAGSAARLILDLYPEAVIHGWELDPSVIKVAREFFALEKLEKSYPDRLFVYVGNALKASLKDGFSGIL 154 (269)
Q Consensus 75 l~~~~~VL~iG~G~G~~~~~l~~~~p~~~v~~vEidp~~~~~a~~~~~~~~~~~~~~~rv~~~~~D~~~~~~~~~yD~I~ 154 (269)
+.+..+|||+|||+|.++..+++. +..+|+++|+|+.+++.|++++... ..+++++.+|+.+....++||+|+
T Consensus 34 ~~~~~~vLDlGcG~G~~~~~la~~-~~~~v~~vD~s~~~l~~a~~n~~~~------~~~~~~~~~d~~~~~~~~~fD~Vi 106 (223)
T PRK14967 34 LGPGRRVLDLCTGSGALAVAAAAA-GAGSVTAVDISRRAVRSARLNALLA------GVDVDVRRGDWARAVEFRPFDVVV 106 (223)
T ss_pred cCCCCeEEEecCCHHHHHHHHHHc-CCCeEEEEECCHHHHHHHHHHHHHh------CCeeEEEECchhhhccCCCeeEEE
Confidence 456789999999999999998874 3459999999999999999887433 235889999987764557899999
Q ss_pred EcCCCCCCCCC-----------------CCCcHHHHHHHHhhccCCcEEEEEec
Q 035593 155 VDLFSKGSLLS-----------------ELEDPNTWEKLRQCLRKGGRIMVNVG 191 (269)
Q Consensus 155 ~d~~~~~~~~~-----------------~l~~~e~~~~~~~~L~pgG~l~~~~~ 191 (269)
++..-...... ......+++.+.+.|+|||++++...
T Consensus 107 ~npPy~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~Lk~gG~l~~~~~ 160 (223)
T PRK14967 107 SNPPYVPAPPDAPPSRGPARAWDAGPDGRAVLDRLCDAAPALLAPGGSLLLVQS 160 (223)
T ss_pred ECCCCCCCCcccccccChhHhhhCCCcHHHHHHHHHHHHHHhcCCCcEEEEEEe
Confidence 98532111000 00124688899999999999987543
No 86
>PLN02490 MPBQ/MSBQ methyltransferase
Probab=99.32 E-value=1.5e-11 Score=110.61 Aligned_cols=101 Identities=13% Similarity=0.035 Sum_probs=81.5
Q ss_pred CCCcEEEEcCcccHHHHHHHHHCCCceEEEEECChHHHHHHHHhcCccccccCCCCcEEEEEcccccc-ccCCCeeEEEE
Q 035593 77 PPGPIGILGFGAGSAARLILDLYPEAVIHGWELDPSVIKVAREFFALEKLEKSYPDRLFVYVGNALKA-SLKDGFSGILV 155 (269)
Q Consensus 77 ~~~~VL~iG~G~G~~~~~l~~~~p~~~v~~vEidp~~~~~a~~~~~~~~~~~~~~~rv~~~~~D~~~~-~~~~~yD~I~~ 155 (269)
+..+|||||||+|.++..+++..++.+++++|+++++++.|+++... .+++++.+|+.+. ...+.||+|++
T Consensus 113 ~~~~VLDLGcGtG~~~l~La~~~~~~~VtgVD~S~~mL~~A~~k~~~--------~~i~~i~gD~e~lp~~~~sFDvVIs 184 (340)
T PLN02490 113 RNLKVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPL--------KECKIIEGDAEDLPFPTDYADRYVS 184 (340)
T ss_pred CCCEEEEEecCCcHHHHHHHHHCCCCEEEEEECCHHHHHHHHHhhhc--------cCCeEEeccHHhCCCCCCceeEEEE
Confidence 56799999999999999998877778999999999999999997642 3688999999887 45678999987
Q ss_pred cCCCCCCCCCCCCcHHHHHHHHhhccCCcEEEEE
Q 035593 156 DLFSKGSLLSELEDPNTWEKLRQCLRKGGRIMVN 189 (269)
Q Consensus 156 d~~~~~~~~~~l~~~e~~~~~~~~L~pgG~l~~~ 189 (269)
...-. .. ......++++++.|+|||.+++.
T Consensus 185 ~~~L~-~~---~d~~~~L~e~~rvLkPGG~LvIi 214 (340)
T PLN02490 185 AGSIE-YW---PDPQRGIKEAYRVLKIGGKACLI 214 (340)
T ss_pred cChhh-hC---CCHHHHHHHHHHhcCCCcEEEEE
Confidence 42111 11 12357999999999999998764
No 87
>PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed
Probab=99.31 E-value=4.6e-11 Score=113.40 Aligned_cols=110 Identities=23% Similarity=0.194 Sum_probs=82.7
Q ss_pred CCcEEEEcCcccHHHHHHHHHCCCceEEEEECChHHHHHHHHhcCccccccCCCCcEEEEEccccccccCCCeeEEEEcC
Q 035593 78 PGPIGILGFGAGSAARLILDLYPEAVIHGWELDPSVIKVAREFFALEKLEKSYPDRLFVYVGNALKASLKDGFSGILVDL 157 (269)
Q Consensus 78 ~~~VL~iG~G~G~~~~~l~~~~p~~~v~~vEidp~~~~~a~~~~~~~~~~~~~~~rv~~~~~D~~~~~~~~~yD~I~~d~ 157 (269)
+.+|||+|||+|.++..+++.+|+.+|+++|+|+.+++.|++++.... ...+++++.+|+.+....++||+|+++.
T Consensus 139 ~~~VLDlG~GsG~iai~la~~~p~~~v~avDis~~al~~A~~N~~~~~----l~~~v~~~~~D~~~~~~~~~fDlIvsNP 214 (506)
T PRK01544 139 FLNILELGTGSGCIAISLLCELPNANVIATDISLDAIEVAKSNAIKYE----VTDRIQIIHSNWFENIEKQKFDFIVSNP 214 (506)
T ss_pred CCEEEEccCchhHHHHHHHHHCCCCeEEEEECCHHHHHHHHHHHHHcC----CccceeeeecchhhhCcCCCccEEEECC
Confidence 468999999999999999988899999999999999999999864322 1357999999987654456899999975
Q ss_pred CCCCC-----C-------CCC--CC--------cHHHHHHHHhhccCCcEEEEEec
Q 035593 158 FSKGS-----L-------LSE--LE--------DPNTWEKLRQCLRKGGRIMVNVG 191 (269)
Q Consensus 158 ~~~~~-----~-------~~~--l~--------~~e~~~~~~~~L~pgG~l~~~~~ 191 (269)
+-... . .+. +. ...+++.+.+.|+|||.+++-+.
T Consensus 215 PYi~~~~~~~l~~~v~~~EP~~AL~gg~dGl~~~~~il~~a~~~L~~gG~l~lEig 270 (506)
T PRK01544 215 PYISHSEKSEMAIETINYEPSIALFAEEDGLQAYFIIAENAKQFLKPNGKIILEIG 270 (506)
T ss_pred CCCCchhhhhcCchhhccCcHHHhcCCccHHHHHHHHHHHHHHhccCCCEEEEEEC
Confidence 32110 0 010 11 13456677889999999998754
No 88
>PF03848 TehB: Tellurite resistance protein TehB; InterPro: IPR015985 Tellurite resistance protein TehB is part of a tellurite-reducing operon tehA and tehB. When present in high copy number, TehB is responsible for potassium tellurite resistance, probably by increasing the reduction rate of tellurite to metallic tellurium within the bacterium. TehB is a cytoplasmic protein which possesses three conserved motifs (I, II, and III) found in S-adenosyl-L-methionine (SAM)-dependent non-nucleic acid methyltransferases []. Conformational changes in TehB are observed upon binding of both tellurite and SAM, suggesting that TehB utilises a methyltransferase activity in the detoxification of tellurite. This entry represents the methyltransferase domain found in all TehB proteins.; PDB: 2KW5_A 3MER_B 3M70_A 2I6G_A 4DQ0_D 2XVA_B 2XVM_A.
Probab=99.31 E-value=1.4e-11 Score=101.99 Aligned_cols=133 Identities=14% Similarity=0.156 Sum_probs=86.0
Q ss_pred CCCCCcEEEEcCcccHHHHHHHHHCCCceEEEEECChHHHHHHHHhcCccccccCCCCcEEEEEccccccccCCCeeEEE
Q 035593 75 ILPPGPIGILGFGAGSAARLILDLYPEAVIHGWELDPSVIKVAREFFALEKLEKSYPDRLFVYVGNALKASLKDGFSGIL 154 (269)
Q Consensus 75 l~~~~~VL~iG~G~G~~~~~l~~~~p~~~v~~vEidp~~~~~a~~~~~~~~~~~~~~~rv~~~~~D~~~~~~~~~yD~I~ 154 (269)
..++.++||||||.|..+.+|++ .+..|+++|+++..++.+++..... +-.++....|..++..++.||+|+
T Consensus 28 ~~~~g~~LDlgcG~GRNalyLA~--~G~~VtAvD~s~~al~~l~~~a~~~------~l~i~~~~~Dl~~~~~~~~yD~I~ 99 (192)
T PF03848_consen 28 LLKPGKALDLGCGEGRNALYLAS--QGFDVTAVDISPVALEKLQRLAEEE------GLDIRTRVADLNDFDFPEEYDFIV 99 (192)
T ss_dssp TS-SSEEEEES-TTSHHHHHHHH--TT-EEEEEESSHHHHHHHHHHHHHT------T-TEEEEE-BGCCBS-TTTEEEEE
T ss_pred hcCCCcEEEcCCCCcHHHHHHHH--CCCeEEEEECCHHHHHHHHHHHhhc------CceeEEEEecchhccccCCcCEEE
Confidence 34689999999999999999998 4889999999999999887765322 224899999998885567899998
Q ss_pred EcCCCCCCCCCCCCcHHHHHHHHhhccCCcEEEEEecCCCccccccccchhHHHHHHHHHHHHHhc
Q 035593 155 VDLFSKGSLLSELEDPNTWEKLRQCLRKGGRIMVNVGGSCVEAEDSRRDGKVVMEATLKAMHKVFG 220 (269)
Q Consensus 155 ~d~~~~~~~~~~l~~~e~~~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~F~ 220 (269)
+..... ...+. ..+..++.++++++|||++++.......+++.+. +..+.---..|++.|.
T Consensus 100 st~v~~-fL~~~-~~~~i~~~m~~~~~pGG~~li~~~~~~~d~p~~~---~~~f~~~~~EL~~~y~ 160 (192)
T PF03848_consen 100 STVVFM-FLQRE-LRPQIIENMKAATKPGGYNLIVTFMETPDYPCPS---PFPFLLKPGELREYYA 160 (192)
T ss_dssp EESSGG-GS-GG-GHHHHHHHHHHTEEEEEEEEEEEEB--SSS--SS-----S--B-TTHHHHHTT
T ss_pred EEEEec-cCCHH-HHHHHHHHHHhhcCCcEEEEEEEecccCCCCCCC---CCCcccCHHHHHHHhC
Confidence 643211 11111 2357899999999999998886543333222221 1111112245777775
No 89
>PRK12335 tellurite resistance protein TehB; Provisional
Probab=99.31 E-value=1.4e-11 Score=108.96 Aligned_cols=104 Identities=15% Similarity=0.149 Sum_probs=79.9
Q ss_pred CCCcEEEEcCcccHHHHHHHHHCCCceEEEEECChHHHHHHHHhcCccccccCCCCcEEEEEccccccccCCCeeEEEEc
Q 035593 77 PPGPIGILGFGAGSAARLILDLYPEAVIHGWELDPSVIKVAREFFALEKLEKSYPDRLFVYVGNALKASLKDGFSGILVD 156 (269)
Q Consensus 77 ~~~~VL~iG~G~G~~~~~l~~~~p~~~v~~vEidp~~~~~a~~~~~~~~~~~~~~~rv~~~~~D~~~~~~~~~yD~I~~d 156 (269)
++.+|||||||+|..+.++++ .+.+|+++|+|+.+++.+++..... .-++++...|+......++||+|++.
T Consensus 120 ~~~~vLDlGcG~G~~~~~la~--~g~~V~avD~s~~ai~~~~~~~~~~------~l~v~~~~~D~~~~~~~~~fD~I~~~ 191 (287)
T PRK12335 120 KPGKALDLGCGQGRNSLYLAL--LGFDVTAVDINQQSLENLQEIAEKE------NLNIRTGLYDINSASIQEEYDFILST 191 (287)
T ss_pred CCCCEEEeCCCCCHHHHHHHH--CCCEEEEEECCHHHHHHHHHHHHHc------CCceEEEEechhcccccCCccEEEEc
Confidence 567999999999999999987 4689999999999999999876432 23688888888766447789999975
Q ss_pred CCCCCCCCCCCCcHHHHHHHHhhccCCcEEEEEe
Q 035593 157 LFSKGSLLSELEDPNTWEKLRQCLRKGGRIMVNV 190 (269)
Q Consensus 157 ~~~~~~~~~~l~~~e~~~~~~~~L~pgG~l~~~~ 190 (269)
..-+ ...+ -....+++.+.++|+|||++++..
T Consensus 192 ~vl~-~l~~-~~~~~~l~~~~~~LkpgG~~l~v~ 223 (287)
T PRK12335 192 VVLM-FLNR-ERIPAIIKNMQEHTNPGGYNLIVC 223 (287)
T ss_pred chhh-hCCH-HHHHHHHHHHHHhcCCCcEEEEEE
Confidence 3221 0111 123589999999999999866543
No 90
>COG2264 PrmA Ribosomal protein L11 methylase [Translation, ribosomal structure and biogenesis]
Probab=99.31 E-value=2.7e-11 Score=106.29 Aligned_cols=106 Identities=17% Similarity=0.173 Sum_probs=80.2
Q ss_pred CCCCCcEEEEcCcccHHHHHHHHHCCCceEEEEECChHHHHHHHHhcCccccccCCCCcEEEEEccccccccCCCeeEEE
Q 035593 75 ILPPGPIGILGFGAGSAARLILDLYPEAVIHGWELDPSVIKVAREFFALEKLEKSYPDRLFVYVGNALKASLKDGFSGIL 154 (269)
Q Consensus 75 l~~~~~VL~iG~G~G~~~~~l~~~~p~~~v~~vEidp~~~~~a~~~~~~~~~~~~~~~rv~~~~~D~~~~~~~~~yD~I~ 154 (269)
+.++++|||+|||+|.++...++ ....+|.++|+||..++.|++++.++.. ...++.-..+.......++||+|+
T Consensus 160 ~~~g~~vlDvGcGSGILaIAa~k-LGA~~v~g~DiDp~AV~aa~eNa~~N~v----~~~~~~~~~~~~~~~~~~~~DvIV 234 (300)
T COG2264 160 LKKGKTVLDVGCGSGILAIAAAK-LGAKKVVGVDIDPQAVEAARENARLNGV----ELLVQAKGFLLLEVPENGPFDVIV 234 (300)
T ss_pred hcCCCEEEEecCChhHHHHHHHH-cCCceEEEecCCHHHHHHHHHHHHHcCC----chhhhcccccchhhcccCcccEEE
Confidence 44799999999999999999998 3456899999999999999999876542 112223333333334457999999
Q ss_pred EcCCCCCCCCCCCCcHHHHHHHHhhccCCcEEEEEecC
Q 035593 155 VDLFSKGSLLSELEDPNTWEKLRQCLRKGGRIMVNVGG 192 (269)
Q Consensus 155 ~d~~~~~~~~~~l~~~e~~~~~~~~L~pgG~l~~~~~~ 192 (269)
.+.-... -.++...+++.|+|||.+++.-.-
T Consensus 235 ANILA~v-------l~~La~~~~~~lkpgg~lIlSGIl 265 (300)
T COG2264 235 ANILAEV-------LVELAPDIKRLLKPGGRLILSGIL 265 (300)
T ss_pred ehhhHHH-------HHHHHHHHHHHcCCCceEEEEeeh
Confidence 8754321 258899999999999999997653
No 91
>PRK00312 pcm protein-L-isoaspartate O-methyltransferase; Reviewed
Probab=99.30 E-value=3.8e-11 Score=101.53 Aligned_cols=101 Identities=22% Similarity=0.250 Sum_probs=79.3
Q ss_pred CCCCCCcEEEEcCcccHHHHHHHHHCCCceEEEEECChHHHHHHHHhcCccccccCCCCcEEEEEcccccc-ccCCCeeE
Q 035593 74 PILPPGPIGILGFGAGSAARLILDLYPEAVIHGWELDPSVIKVAREFFALEKLEKSYPDRLFVYVGNALKA-SLKDGFSG 152 (269)
Q Consensus 74 ~l~~~~~VL~iG~G~G~~~~~l~~~~p~~~v~~vEidp~~~~~a~~~~~~~~~~~~~~~rv~~~~~D~~~~-~~~~~yD~ 152 (269)
.+.+..+|||+|||+|..+..+++.. .+++++|+++++++.|++++.... -.+++++.+|+.+. ...++||+
T Consensus 75 ~~~~~~~VLeiG~GsG~~t~~la~~~--~~v~~vd~~~~~~~~a~~~~~~~~-----~~~v~~~~~d~~~~~~~~~~fD~ 147 (212)
T PRK00312 75 ELKPGDRVLEIGTGSGYQAAVLAHLV--RRVFSVERIKTLQWEAKRRLKQLG-----LHNVSVRHGDGWKGWPAYAPFDR 147 (212)
T ss_pred CCCCCCEEEEECCCccHHHHHHHHHh--CEEEEEeCCHHHHHHHHHHHHHCC-----CCceEEEECCcccCCCcCCCcCE
Confidence 45578899999999999998887753 489999999999999999875322 23599999998764 44478999
Q ss_pred EEEcCCCCCCCCCCCCcHHHHHHHHhhccCCcEEEEEec
Q 035593 153 ILVDLFSKGSLLSELEDPNTWEKLRQCLRKGGRIMVNVG 191 (269)
Q Consensus 153 I~~d~~~~~~~~~~l~~~e~~~~~~~~L~pgG~l~~~~~ 191 (269)
|+++... ..+.+.+.+.|+|||.+++...
T Consensus 148 I~~~~~~----------~~~~~~l~~~L~~gG~lv~~~~ 176 (212)
T PRK00312 148 ILVTAAA----------PEIPRALLEQLKEGGILVAPVG 176 (212)
T ss_pred EEEccCc----------hhhhHHHHHhcCCCcEEEEEEc
Confidence 9987532 1234567889999999999875
No 92
>TIGR02716 C20_methyl_CrtF C-20 methyltransferase BchU. Members of this protein family are the S-adenosylmethionine-depenedent C-20 methyltransferase BchU, part of the pathway of bacteriochlorophyll c production in photosynthetic green sulfur bacteria. The position modified by this enzyme represents the difference between bacteriochlorophylls c and d; strains lacking this protein can only produced bacteriochlorophyll d.
Probab=99.30 E-value=2.3e-11 Score=108.59 Aligned_cols=108 Identities=20% Similarity=0.172 Sum_probs=82.0
Q ss_pred CCCCCcEEEEcCcccHHHHHHHHHCCCceEEEEECChHHHHHHHHhcCccccccCCCCcEEEEEccccccccCCCeeEEE
Q 035593 75 ILPPGPIGILGFGAGSAARLILDLYPEAVIHGWELDPSVIKVAREFFALEKLEKSYPDRLFVYVGNALKASLKDGFSGIL 154 (269)
Q Consensus 75 l~~~~~VL~iG~G~G~~~~~l~~~~p~~~v~~vEidp~~~~~a~~~~~~~~~~~~~~~rv~~~~~D~~~~~~~~~yD~I~ 154 (269)
+.+..+|||||||+|.++..+++++|+.+++++|+ |.+++.++++..... ..+|++++.+|+.+... +.+|+|+
T Consensus 147 ~~~~~~vlDiG~G~G~~~~~~~~~~p~~~~~~~D~-~~~~~~a~~~~~~~g----l~~rv~~~~~d~~~~~~-~~~D~v~ 220 (306)
T TIGR02716 147 LDGVKKMIDVGGGIGDISAAMLKHFPELDSTILNL-PGAIDLVNENAAEKG----VADRMRGIAVDIYKESY-PEADAVL 220 (306)
T ss_pred CCCCCEEEEeCCchhHHHHHHHHHCCCCEEEEEec-HHHHHHHHHHHHhCC----ccceEEEEecCccCCCC-CCCCEEE
Confidence 34568999999999999999999999999999998 899999998764322 14689999999986422 2479987
Q ss_pred EcCCCCCCCCCCCCcHHHHHHHHhhccCCcEEEEEe
Q 035593 155 VDLFSKGSLLSELEDPNTWEKLRQCLRKGGRIMVNV 190 (269)
Q Consensus 155 ~d~~~~~~~~~~l~~~e~~~~~~~~L~pgG~l~~~~ 190 (269)
+.-.-+. .. .-....++++++++|+|||.+++.-
T Consensus 221 ~~~~lh~-~~-~~~~~~il~~~~~~L~pgG~l~i~d 254 (306)
T TIGR02716 221 FCRILYS-AN-EQLSTIMCKKAFDAMRSGGRLLILD 254 (306)
T ss_pred eEhhhhc-CC-hHHHHHHHHHHHHhcCCCCEEEEEE
Confidence 6432111 00 0112468999999999999998764
No 93
>KOG1540 consensus Ubiquinone biosynthesis methyltransferase COQ5 [Coenzyme transport and metabolism]
Probab=99.30 E-value=5.9e-11 Score=100.51 Aligned_cols=107 Identities=17% Similarity=0.172 Sum_probs=87.5
Q ss_pred CCcEEEEcCcccHHHHHHHHHCCC------ceEEEEECChHHHHHHHHhc---CccccccCCCCcEEEEEcccccc-ccC
Q 035593 78 PGPIGILGFGAGSAARLILDLYPE------AVIHGWELDPSVIKVAREFF---ALEKLEKSYPDRLFVYVGNALKA-SLK 147 (269)
Q Consensus 78 ~~~VL~iG~G~G~~~~~l~~~~p~------~~v~~vEidp~~~~~a~~~~---~~~~~~~~~~~rv~~~~~D~~~~-~~~ 147 (269)
..++||++||+|-++-.++++.+. .+|+++||||.|+..++++. ++. .++++.++.+||.+. ..+
T Consensus 101 ~m~~lDvaGGTGDiaFril~~v~s~~~~~~~~V~v~Dinp~mL~vgkqRa~~~~l~-----~~~~~~w~~~dAE~LpFdd 175 (296)
T KOG1540|consen 101 GMKVLDVAGGTGDIAFRILRHVKSQFGDRESKVTVLDINPHMLAVGKQRAKKRPLK-----ASSRVEWVEGDAEDLPFDD 175 (296)
T ss_pred CCeEEEecCCcchhHHHHHHhhccccCCCCceEEEEeCCHHHHHHHHHHHhhcCCC-----cCCceEEEeCCcccCCCCC
Confidence 579999999999999999987665 79999999999999999987 433 256799999999999 778
Q ss_pred CCeeEEEEcCCCCCCCCCCCCcHHHHHHHHhhccCCcEEEEEecCC
Q 035593 148 DGFSGILVDLFSKGSLLSELEDPNTWEKLRQCLRKGGRIMVNVGGS 193 (269)
Q Consensus 148 ~~yD~I~~d~~~~~~~~~~l~~~e~~~~~~~~L~pgG~l~~~~~~~ 193 (269)
..||...+. |. +...-..+..+++++++|||||++.+-.++.
T Consensus 176 ~s~D~yTia-fG---IRN~th~~k~l~EAYRVLKpGGrf~cLeFsk 217 (296)
T KOG1540|consen 176 DSFDAYTIA-FG---IRNVTHIQKALREAYRVLKPGGRFSCLEFSK 217 (296)
T ss_pred CcceeEEEe-cc---eecCCCHHHHHHHHHHhcCCCcEEEEEEccc
Confidence 899998763 22 2222234789999999999999998766654
No 94
>PRK00517 prmA ribosomal protein L11 methyltransferase; Reviewed
Probab=99.29 E-value=4.5e-11 Score=103.71 Aligned_cols=99 Identities=20% Similarity=0.273 Sum_probs=74.2
Q ss_pred CCCCCcEEEEcCcccHHHHHHHHHCCCceEEEEECChHHHHHHHHhcCccccccCCCCcEEEEEccccccccCCCeeEEE
Q 035593 75 ILPPGPIGILGFGAGSAARLILDLYPEAVIHGWELDPSVIKVAREFFALEKLEKSYPDRLFVYVGNALKASLKDGFSGIL 154 (269)
Q Consensus 75 l~~~~~VL~iG~G~G~~~~~l~~~~p~~~v~~vEidp~~~~~a~~~~~~~~~~~~~~~rv~~~~~D~~~~~~~~~yD~I~ 154 (269)
+.++.+|||+|||+|.++..+++. ...+|+++|+||.+++.|++++..+.. ..++.+..+| .+||+|+
T Consensus 117 ~~~~~~VLDiGcGsG~l~i~~~~~-g~~~v~giDis~~~l~~A~~n~~~~~~----~~~~~~~~~~-------~~fD~Vv 184 (250)
T PRK00517 117 VLPGKTVLDVGCGSGILAIAAAKL-GAKKVLAVDIDPQAVEAARENAELNGV----ELNVYLPQGD-------LKADVIV 184 (250)
T ss_pred cCCCCEEEEeCCcHHHHHHHHHHc-CCCeEEEEECCHHHHHHHHHHHHHcCC----CceEEEccCC-------CCcCEEE
Confidence 447899999999999999987763 344799999999999999998754321 1234443332 2799999
Q ss_pred EcCCCCCCCCCCCCcHHHHHHHHhhccCCcEEEEEecC
Q 035593 155 VDLFSKGSLLSELEDPNTWEKLRQCLRKGGRIMVNVGG 192 (269)
Q Consensus 155 ~d~~~~~~~~~~l~~~e~~~~~~~~L~pgG~l~~~~~~ 192 (269)
++..... ...++..+.+.|+|||.+++....
T Consensus 185 ani~~~~-------~~~l~~~~~~~LkpgG~lilsgi~ 215 (250)
T PRK00517 185 ANILANP-------LLELAPDLARLLKPGGRLILSGIL 215 (250)
T ss_pred EcCcHHH-------HHHHHHHHHHhcCCCcEEEEEECc
Confidence 8653211 257889999999999999987543
No 95
>PRK06922 hypothetical protein; Provisional
Probab=99.29 E-value=1.7e-11 Score=117.09 Aligned_cols=110 Identities=19% Similarity=0.218 Sum_probs=85.3
Q ss_pred CCCCcEEEEcCcccHHHHHHHHHCCCceEEEEECChHHHHHHHHhcCccccccCCCCcEEEEEcccccc---ccCCCeeE
Q 035593 76 LPPGPIGILGFGAGSAARLILDLYPEAVIHGWELDPSVIKVAREFFALEKLEKSYPDRLFVYVGNALKA---SLKDGFSG 152 (269)
Q Consensus 76 ~~~~~VL~iG~G~G~~~~~l~~~~p~~~v~~vEidp~~~~~a~~~~~~~~~~~~~~~rv~~~~~D~~~~---~~~~~yD~ 152 (269)
.++.+|||||||+|..+..+++.+|+.+++++|+++.|++.|++..... ..+++++++|+.++ ..+++||+
T Consensus 417 ~~g~rVLDIGCGTG~ls~~LA~~~P~~kVtGIDIS~~MLe~Ararl~~~------g~~ie~I~gDa~dLp~~fedeSFDv 490 (677)
T PRK06922 417 IKGDTIVDVGAGGGVMLDMIEEETEDKRIYGIDISENVIDTLKKKKQNE------GRSWNVIKGDAINLSSSFEKESVDT 490 (677)
T ss_pred cCCCEEEEeCCCCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhhc------CCCeEEEEcchHhCccccCCCCEEE
Confidence 3678999999999999999998889999999999999999999875322 24688999999875 34678999
Q ss_pred EEEcCCCCCC---CC------CCCCcHHHHHHHHhhccCCcEEEEEec
Q 035593 153 ILVDLFSKGS---LL------SELEDPNTWEKLRQCLRKGGRIMVNVG 191 (269)
Q Consensus 153 I~~d~~~~~~---~~------~~l~~~e~~~~~~~~L~pgG~l~~~~~ 191 (269)
|++...-+.. .+ ..-....++++++++|||||.+++...
T Consensus 491 VVsn~vLH~L~syIp~~g~~f~~edl~kiLreI~RVLKPGGrLII~D~ 538 (677)
T PRK06922 491 IVYSSILHELFSYIEYEGKKFNHEVIKKGLQSAYEVLKPGGRIIIRDG 538 (677)
T ss_pred EEEchHHHhhhhhcccccccccHHHHHHHHHHHHHHcCCCcEEEEEeC
Confidence 9875322210 01 011236899999999999999998653
No 96
>PRK00216 ubiE ubiquinone/menaquinone biosynthesis methyltransferase; Reviewed
Probab=99.29 E-value=6.9e-11 Score=101.06 Aligned_cols=108 Identities=15% Similarity=0.202 Sum_probs=85.5
Q ss_pred CCCCcEEEEcCcccHHHHHHHHHCC-CceEEEEECChHHHHHHHHhcCccccccCCCCcEEEEEcccccc-ccCCCeeEE
Q 035593 76 LPPGPIGILGFGAGSAARLILDLYP-EAVIHGWELDPSVIKVAREFFALEKLEKSYPDRLFVYVGNALKA-SLKDGFSGI 153 (269)
Q Consensus 76 ~~~~~VL~iG~G~G~~~~~l~~~~p-~~~v~~vEidp~~~~~a~~~~~~~~~~~~~~~rv~~~~~D~~~~-~~~~~yD~I 153 (269)
.+..+|||||||+|..+..+++..+ ..+++++|+++.+++.|++++.... ...+++++.+|+.+. ...+.||+|
T Consensus 50 ~~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~----~~~~~~~~~~d~~~~~~~~~~~D~I 125 (239)
T PRK00216 50 RPGDKVLDLACGTGDLAIALAKAVGKTGEVVGLDFSEGMLAVGREKLRDLG----LSGNVEFVQGDAEALPFPDNSFDAV 125 (239)
T ss_pred CCCCeEEEeCCCCCHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHhhcccc----cccCeEEEecccccCCCCCCCccEE
Confidence 3678999999999999999998877 6899999999999999999875321 135789999999877 445789999
Q ss_pred EEcCCCCCCCCCCCCcHHHHHHHHhhccCCcEEEEEec
Q 035593 154 LVDLFSKGSLLSELEDPNTWEKLRQCLRKGGRIMVNVG 191 (269)
Q Consensus 154 ~~d~~~~~~~~~~l~~~e~~~~~~~~L~pgG~l~~~~~ 191 (269)
++...-+ .. -....+++.+.+.|+|||.+++...
T Consensus 126 ~~~~~l~-~~---~~~~~~l~~~~~~L~~gG~li~~~~ 159 (239)
T PRK00216 126 TIAFGLR-NV---PDIDKALREMYRVLKPGGRLVILEF 159 (239)
T ss_pred EEecccc-cC---CCHHHHHHHHHHhccCCcEEEEEEe
Confidence 8743211 11 1246899999999999998877544
No 97
>TIGR01177 conserved hypothetical protein TIGR01177. This family is found exclusively in the Archaea.
Probab=99.28 E-value=3.8e-11 Score=108.28 Aligned_cols=121 Identities=18% Similarity=0.087 Sum_probs=90.1
Q ss_pred HHHHHhcCCCCCCCCcEEEEcCcccHHHHHHHHHCCCceEEEEECChHHHHHHHHhcCccccccCCCCcEEEEEcccccc
Q 035593 65 YFDAFATLPPILPPGPIGILGFGAGSAARLILDLYPEAVIHGWELDPSVIKVAREFFALEKLEKSYPDRLFVYVGNALKA 144 (269)
Q Consensus 65 y~~~~~~~~~l~~~~~VL~iG~G~G~~~~~l~~~~p~~~v~~vEidp~~~~~a~~~~~~~~~~~~~~~rv~~~~~D~~~~ 144 (269)
..+.|+.+..+.+..+|||+|||+|.++..++. .+.+++++|+|+.|++.|++++.... -..++++.+|+.+.
T Consensus 170 la~~~~~l~~~~~g~~vLDp~cGtG~~lieaa~--~~~~v~g~Di~~~~~~~a~~nl~~~g-----~~~i~~~~~D~~~l 242 (329)
T TIGR01177 170 LARAMVNLARVTEGDRVLDPFCGTGGFLIEAGL--MGAKVIGCDIDWKMVAGARINLEHYG-----IEDFFVKRGDATKL 242 (329)
T ss_pred HHHHHHHHhCCCCcCEEEECCCCCCHHHHHHHH--hCCeEEEEcCCHHHHHHHHHHHHHhC-----CCCCeEEecchhcC
Confidence 444554333456778999999999999988765 47899999999999999998874322 12388999999987
Q ss_pred -ccCCCeeEEEEcCCCCCCCC--CCC---CcHHHHHHHHhhccCCcEEEEEecC
Q 035593 145 -SLKDGFSGILVDLFSKGSLL--SEL---EDPNTWEKLRQCLRKGGRIMVNVGG 192 (269)
Q Consensus 145 -~~~~~yD~I~~d~~~~~~~~--~~l---~~~e~~~~~~~~L~pgG~l~~~~~~ 192 (269)
...++||+|++|++-..... .+. ...++++.+++.|+|||.+++.+..
T Consensus 243 ~~~~~~~D~Iv~dPPyg~~~~~~~~~~~~l~~~~l~~~~r~Lk~gG~lv~~~~~ 296 (329)
T TIGR01177 243 PLSSESVDAIATDPPYGRSTTAAGDGLESLYERSLEEFHEVLKSEGWIVYAVPT 296 (329)
T ss_pred CcccCCCCEEEECCCCcCcccccCCchHHHHHHHHHHHHHHccCCcEEEEEEcC
Confidence 44678999999864332111 111 1368999999999999999987754
No 98
>PRK11705 cyclopropane fatty acyl phospholipid synthase; Provisional
Probab=99.28 E-value=4.3e-11 Score=109.87 Aligned_cols=106 Identities=21% Similarity=0.276 Sum_probs=82.4
Q ss_pred CCCCCCcEEEEcCcccHHHHHHHHHCCCceEEEEECChHHHHHHHHhcCccccccCCCCcEEEEEccccccccCCCeeEE
Q 035593 74 PILPPGPIGILGFGAGSAARLILDLYPEAVIHGWELDPSVIKVAREFFALEKLEKSYPDRLFVYVGNALKASLKDGFSGI 153 (269)
Q Consensus 74 ~l~~~~~VL~iG~G~G~~~~~l~~~~p~~~v~~vEidp~~~~~a~~~~~~~~~~~~~~~rv~~~~~D~~~~~~~~~yD~I 153 (269)
.+.+..+|||||||+|.++..+++++ +++|+++|+++++++.|+++.. ...+++..+|..+. .++||+|
T Consensus 164 ~l~~g~rVLDIGcG~G~~a~~la~~~-g~~V~giDlS~~~l~~A~~~~~--------~l~v~~~~~D~~~l--~~~fD~I 232 (383)
T PRK11705 164 QLKPGMRVLDIGCGWGGLARYAAEHY-GVSVVGVTISAEQQKLAQERCA--------GLPVEIRLQDYRDL--NGQFDRI 232 (383)
T ss_pred CCCCCCEEEEeCCCccHHHHHHHHHC-CCEEEEEeCCHHHHHHHHHHhc--------cCeEEEEECchhhc--CCCCCEE
Confidence 35678899999999999999998864 7899999999999999999863 12488888887765 4689999
Q ss_pred EEcC-CCCCCCCCCCCcHHHHHHHHhhccCCcEEEEEecCC
Q 035593 154 LVDL-FSKGSLLSELEDPNTWEKLRQCLRKGGRIMVNVGGS 193 (269)
Q Consensus 154 ~~d~-~~~~~~~~~l~~~e~~~~~~~~L~pgG~l~~~~~~~ 193 (269)
++.. +.+ . ..-....+++.+.+.|||||.+++..+..
T Consensus 233 vs~~~~eh--v-g~~~~~~~l~~i~r~LkpGG~lvl~~i~~ 270 (383)
T PRK11705 233 VSVGMFEH--V-GPKNYRTYFEVVRRCLKPDGLFLLHTIGS 270 (383)
T ss_pred EEeCchhh--C-ChHHHHHHHHHHHHHcCCCcEEEEEEccC
Confidence 8632 111 1 11113589999999999999999876543
No 99
>PRK11088 rrmA 23S rRNA methyltransferase A; Provisional
Probab=99.28 E-value=2.6e-11 Score=106.46 Aligned_cols=96 Identities=19% Similarity=0.325 Sum_probs=77.3
Q ss_pred CCCcEEEEcCcccHHHHHHHHHCCC---ceEEEEECChHHHHHHHHhcCccccccCCCCcEEEEEcccccc-ccCCCeeE
Q 035593 77 PPGPIGILGFGAGSAARLILDLYPE---AVIHGWELDPSVIKVAREFFALEKLEKSYPDRLFVYVGNALKA-SLKDGFSG 152 (269)
Q Consensus 77 ~~~~VL~iG~G~G~~~~~l~~~~p~---~~v~~vEidp~~~~~a~~~~~~~~~~~~~~~rv~~~~~D~~~~-~~~~~yD~ 152 (269)
+..+|||+|||+|.++..+++..+. .+++++|+++.+++.|++.. +++++.++|+.+. ..++.||+
T Consensus 85 ~~~~vLDiGcG~G~~~~~l~~~~~~~~~~~v~giD~s~~~l~~A~~~~----------~~~~~~~~d~~~lp~~~~sfD~ 154 (272)
T PRK11088 85 KATALLDIGCGEGYYTHALADALPEITTMQLFGLDISKVAIKYAAKRY----------PQVTFCVASSHRLPFADQSLDA 154 (272)
T ss_pred CCCeEEEECCcCCHHHHHHHHhcccccCCeEEEECCCHHHHHHHHHhC----------CCCeEEEeecccCCCcCCceeE
Confidence 3578999999999999999887663 47999999999999998864 3578999998887 45678999
Q ss_pred EEEcCCCCCCCCCCCCcHHHHHHHHhhccCCcEEEEEecCC
Q 035593 153 ILVDLFSKGSLLSELEDPNTWEKLRQCLRKGGRIMVNVGGS 193 (269)
Q Consensus 153 I~~d~~~~~~~~~~l~~~e~~~~~~~~L~pgG~l~~~~~~~ 193 (269)
|+... . +.+++++++.|+|||.+++...++
T Consensus 155 I~~~~-~----------~~~~~e~~rvLkpgG~li~~~p~~ 184 (272)
T PRK11088 155 IIRIY-A----------PCKAEELARVVKPGGIVITVTPGP 184 (272)
T ss_pred EEEec-C----------CCCHHHHHhhccCCCEEEEEeCCC
Confidence 98632 1 234678899999999999876543
No 100
>PF06325 PrmA: Ribosomal protein L11 methyltransferase (PrmA); InterPro: IPR010456 This family consists of several Ribosomal protein L11 methyltransferase sequences. Its genetic determinant is prmA, which forms a bifunctional operon with the downstream panF gene []. The role of L11 methylation in ribosome function is, as yet, unknown. Deletion of the prmA gene in Escherichia coli showed no obvious effect [] except for the production of undermethylated forms of L11 []. Methylation is the most common post-transcriptional modification to ribosomal proteins in all organisms. PrmA is the only bacterial enzyme that catalyses the methylation of a ribosomal protein [].; GO: 0008276 protein methyltransferase activity, 0006479 protein methylation, 0005737 cytoplasm; PDB: 3GRZ_B 1F3L_A 2NXJ_B 3CJT_I 3CJQ_G 2NXE_A 2NXC_A 2ZBP_A 3EGV_A 3CJS_A ....
Probab=99.27 E-value=1.5e-11 Score=108.53 Aligned_cols=103 Identities=18% Similarity=0.227 Sum_probs=76.9
Q ss_pred CCCCCcEEEEcCcccHHHHHHHHHCCCceEEEEECChHHHHHHHHhcCccccccCCCCcEEEEEccccccccCCCeeEEE
Q 035593 75 ILPPGPIGILGFGAGSAARLILDLYPEAVIHGWELDPSVIKVAREFFALEKLEKSYPDRLFVYVGNALKASLKDGFSGIL 154 (269)
Q Consensus 75 l~~~~~VL~iG~G~G~~~~~l~~~~p~~~v~~vEidp~~~~~a~~~~~~~~~~~~~~~rv~~~~~D~~~~~~~~~yD~I~ 154 (269)
..+.++|||+|||+|.++...++. ...+|+++|+||..++.|++++.++.. ..++++. ...+ ....+||+|+
T Consensus 159 ~~~g~~vLDvG~GSGILaiaA~kl-GA~~v~a~DiDp~Av~~a~~N~~~N~~----~~~~~v~--~~~~-~~~~~~dlvv 230 (295)
T PF06325_consen 159 VKPGKRVLDVGCGSGILAIAAAKL-GAKKVVAIDIDPLAVEAARENAELNGV----EDRIEVS--LSED-LVEGKFDLVV 230 (295)
T ss_dssp SSTTSEEEEES-TTSHHHHHHHHT-TBSEEEEEESSCHHHHHHHHHHHHTT-----TTCEEES--CTSC-TCCS-EEEEE
T ss_pred ccCCCEEEEeCCcHHHHHHHHHHc-CCCeEEEecCCHHHHHHHHHHHHHcCC----CeeEEEE--Eecc-cccccCCEEE
Confidence 446789999999999999999984 455899999999999999999876652 3466653 1111 2348999999
Q ss_pred EcCCCCCCCCCCCCcHHHHHHHHhhccCCcEEEEEecC
Q 035593 155 VDLFSKGSLLSELEDPNTWEKLRQCLRKGGRIMVNVGG 192 (269)
Q Consensus 155 ~d~~~~~~~~~~l~~~e~~~~~~~~L~pgG~l~~~~~~ 192 (269)
.+..... ..+....+.++|+|||.+++.-.-
T Consensus 231 ANI~~~v-------L~~l~~~~~~~l~~~G~lIlSGIl 261 (295)
T PF06325_consen 231 ANILADV-------LLELAPDIASLLKPGGYLILSGIL 261 (295)
T ss_dssp EES-HHH-------HHHHHHHCHHHEEEEEEEEEEEEE
T ss_pred ECCCHHH-------HHHHHHHHHHhhCCCCEEEEcccc
Confidence 8765331 247788889999999999997654
No 101
>TIGR01934 MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis methyltransferases. Note that a number of non-orthologous genes which are members of pfam03737 have been erroneously annotated as MenG methyltransferases.
Probab=99.27 E-value=9e-11 Score=99.28 Aligned_cols=105 Identities=14% Similarity=0.221 Sum_probs=84.7
Q ss_pred CCCCcEEEEcCcccHHHHHHHHHCCC-ceEEEEECChHHHHHHHHhcCccccccCCCCcEEEEEcccccc-ccCCCeeEE
Q 035593 76 LPPGPIGILGFGAGSAARLILDLYPE-AVIHGWELDPSVIKVAREFFALEKLEKSYPDRLFVYVGNALKA-SLKDGFSGI 153 (269)
Q Consensus 76 ~~~~~VL~iG~G~G~~~~~l~~~~p~-~~v~~vEidp~~~~~a~~~~~~~~~~~~~~~rv~~~~~D~~~~-~~~~~yD~I 153 (269)
.++.+|||+|||+|..+..+++..+. .+++++|+++.+++.+++++.. ..+++++.+|+.+. ...++||+|
T Consensus 38 ~~~~~vldiG~G~G~~~~~~~~~~~~~~~~~~iD~~~~~~~~~~~~~~~-------~~~i~~~~~d~~~~~~~~~~~D~i 110 (223)
T TIGR01934 38 FKGQKVLDVACGTGDLAIELAKSAPDRGKVTGVDFSSEMLEVAKKKSEL-------PLNIEFIQADAEALPFEDNSFDAV 110 (223)
T ss_pred CCCCeEEEeCCCCChhHHHHHHhcCCCceEEEEECCHHHHHHHHHHhcc-------CCCceEEecchhcCCCCCCcEEEE
Confidence 36889999999999999999988775 7999999999999999998751 35789999999887 445689999
Q ss_pred EEcCCCCCCCCCCCCcHHHHHHHHhhccCCcEEEEEec
Q 035593 154 LVDLFSKGSLLSELEDPNTWEKLRQCLRKGGRIMVNVG 191 (269)
Q Consensus 154 ~~d~~~~~~~~~~l~~~e~~~~~~~~L~pgG~l~~~~~ 191 (269)
++..... ..-....+++.+++.|+|||.+++...
T Consensus 111 ~~~~~~~----~~~~~~~~l~~~~~~L~~gG~l~~~~~ 144 (223)
T TIGR01934 111 TIAFGLR----NVTDIQKALREMYRVLKPGGRLVILEF 144 (223)
T ss_pred EEeeeeC----CcccHHHHHHHHHHHcCCCcEEEEEEe
Confidence 8743211 111246899999999999999987544
No 102
>TIGR03840 TMPT_Se_Te thiopurine S-methyltransferase, Se/Te detoxification family. Members of this family are thiopurine S-methyltransferase from a branch in which at least some member proteins can perform selenium methylation as a means to detoxify selenium, or perform a related detoxification of tellurium. Note that the EC number definition does not specify a particular thiopurine, but rather represents a class of activity.
Probab=99.26 E-value=7.7e-11 Score=99.79 Aligned_cols=112 Identities=11% Similarity=0.020 Sum_probs=80.1
Q ss_pred CCCCcEEEEcCcccHHHHHHHHHCCCceEEEEECChHHHHHHHHhcCcccc-------ccCCCCcEEEEEccccccc--c
Q 035593 76 LPPGPIGILGFGAGSAARLILDLYPEAVIHGWELDPSVIKVAREFFALEKL-------EKSYPDRLFVYVGNALKAS--L 146 (269)
Q Consensus 76 ~~~~~VL~iG~G~G~~~~~l~~~~p~~~v~~vEidp~~~~~a~~~~~~~~~-------~~~~~~rv~~~~~D~~~~~--~ 146 (269)
.+..+||++|||.|..+.+|++ .+.+|++||++|..++.+.+..+.... ......+++++++|+.++. .
T Consensus 33 ~~~~rvLd~GCG~G~da~~LA~--~G~~V~gvD~S~~Ai~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~ 110 (213)
T TIGR03840 33 PAGARVFVPLCGKSLDLAWLAE--QGHRVLGVELSEIAVEQFFAENGLTPTVTQQGEFTRYRAGNIEIFCGDFFALTAAD 110 (213)
T ss_pred CCCCeEEEeCCCchhHHHHHHh--CCCeEEEEeCCHHHHHHHHHHcCCCcceeccccceeeecCceEEEEccCCCCCccc
Confidence 3567999999999999999998 488999999999999987554332210 0001357999999999873 2
Q ss_pred CCCeeEEEEcCCCCCCCCCCCCcHHHHHHHHhhccCCcEEEEEec
Q 035593 147 KDGFSGILVDLFSKGSLLSELEDPNTWEKLRQCLRKGGRIMVNVG 191 (269)
Q Consensus 147 ~~~yD~I~~d~~~~~~~~~~l~~~e~~~~~~~~L~pgG~l~~~~~ 191 (269)
.++||.|+-...-. ..++. ....+++.+.+.|+|||.+++..+
T Consensus 111 ~~~fD~i~D~~~~~-~l~~~-~R~~~~~~l~~lLkpgG~~ll~~~ 153 (213)
T TIGR03840 111 LGPVDAVYDRAALI-ALPEE-MRQRYAAHLLALLPPGARQLLITL 153 (213)
T ss_pred CCCcCEEEechhhc-cCCHH-HHHHHHHHHHHHcCCCCeEEEEEE
Confidence 46799997422211 12221 245799999999999997555544
No 103
>PRK13943 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=99.25 E-value=9.5e-11 Score=104.90 Aligned_cols=102 Identities=15% Similarity=0.173 Sum_probs=79.5
Q ss_pred CCCCCCcEEEEcCcccHHHHHHHHHCC-CceEEEEECChHHHHHHHHhcCccccccCCCCcEEEEEcccccc-ccCCCee
Q 035593 74 PILPPGPIGILGFGAGSAARLILDLYP-EAVIHGWELDPSVIKVAREFFALEKLEKSYPDRLFVYVGNALKA-SLKDGFS 151 (269)
Q Consensus 74 ~l~~~~~VL~iG~G~G~~~~~l~~~~p-~~~v~~vEidp~~~~~a~~~~~~~~~~~~~~~rv~~~~~D~~~~-~~~~~yD 151 (269)
.+.+..+|||||||+|.++..+++..+ ..+|+++|+++++++.|++.+...+ ..+++++.+|+... .....||
T Consensus 77 ~i~~g~~VLDIG~GtG~~a~~LA~~~~~~g~VvgVDis~~~l~~Ar~~l~~~g-----~~nV~~i~gD~~~~~~~~~~fD 151 (322)
T PRK13943 77 GLDKGMRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVRRLG-----IENVIFVCGDGYYGVPEFAPYD 151 (322)
T ss_pred CCCCCCEEEEEeCCccHHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHHHHcC-----CCcEEEEeCChhhcccccCCcc
Confidence 355778999999999999999998765 3589999999999999998764322 24699999998776 3446799
Q ss_pred EEEEcCCCCCCCCCCCCcHHHHHHHHhhccCCcEEEEEe
Q 035593 152 GILVDLFSKGSLLSELEDPNTWEKLRQCLRKGGRIMVNV 190 (269)
Q Consensus 152 ~I~~d~~~~~~~~~~l~~~e~~~~~~~~L~pgG~l~~~~ 190 (269)
+|+++... .+....+.+.|+|||.+++..
T Consensus 152 ~Ii~~~g~----------~~ip~~~~~~LkpgG~Lvv~~ 180 (322)
T PRK13943 152 VIFVTVGV----------DEVPETWFTQLKEGGRVIVPI 180 (322)
T ss_pred EEEECCch----------HHhHHHHHHhcCCCCEEEEEe
Confidence 99986321 223445678999999988865
No 104
>TIGR00446 nop2p NOL1/NOP2/sun family putative RNA methylase.
Probab=99.25 E-value=2.2e-10 Score=100.21 Aligned_cols=131 Identities=17% Similarity=0.075 Sum_probs=96.6
Q ss_pred CCCCCcEEEEcCcccHHHHHHHHHCC-CceEEEEECChHHHHHHHHhcCccccccCCCCcEEEEEcccccc-ccCCCeeE
Q 035593 75 ILPPGPIGILGFGAGSAARLILDLYP-EAVIHGWELDPSVIKVAREFFALEKLEKSYPDRLFVYVGNALKA-SLKDGFSG 152 (269)
Q Consensus 75 l~~~~~VL~iG~G~G~~~~~l~~~~p-~~~v~~vEidp~~~~~a~~~~~~~~~~~~~~~rv~~~~~D~~~~-~~~~~yD~ 152 (269)
..++.+|||+|||+|..+..+++... ..+|+++|+++.+++.+++++.... -.+++++.+|+..+ ...+.||+
T Consensus 69 ~~~g~~VLDl~ag~G~kt~~la~~~~~~g~v~a~D~~~~~l~~~~~n~~~~g-----~~~v~~~~~D~~~~~~~~~~fD~ 143 (264)
T TIGR00446 69 PDPPERVLDMAAAPGGKTTQISALMKNEGAIVANEFSKSRTKVLIANINRCG-----VLNVAVTNFDGRVFGAAVPKFDA 143 (264)
T ss_pred CCCcCEEEEECCCchHHHHHHHHHcCCCCEEEEEcCCHHHHHHHHHHHHHcC-----CCcEEEecCCHHHhhhhccCCCE
Confidence 35678999999999999999988764 4699999999999999999875332 24699999999877 34456999
Q ss_pred EEEcCCCCCC-CC---CCC--------------CcHHHHHHHHhhccCCcEEEEEecCCCccccccccchhHHHHHHHHH
Q 035593 153 ILVDLFSKGS-LL---SEL--------------EDPNTWEKLRQCLRKGGRIMVNVGGSCVEAEDSRRDGKVVMEATLKA 214 (269)
Q Consensus 153 I~~d~~~~~~-~~---~~l--------------~~~e~~~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 214 (269)
|++|++-... +. +.. ...++++.+.+.|+|||+++....+... .....+++.
T Consensus 144 Vl~D~Pcsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~lkpgG~lvYstcs~~~----------~Ene~vv~~ 213 (264)
T TIGR00446 144 ILLDAPCSGEGVIRKDPSRKKNWSEEDIQEISALQKELIDSAFDALKPGGVLVYSTCSLEP----------EENEAVVDY 213 (264)
T ss_pred EEEcCCCCCCcccccChhhhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCCCCh----------HHHHHHHHH
Confidence 9999754321 10 110 1246899999999999999887665532 123456666
Q ss_pred HHHHhc
Q 035593 215 MHKVFG 220 (269)
Q Consensus 215 l~~~F~ 220 (269)
+.+.++
T Consensus 214 ~l~~~~ 219 (264)
T TIGR00446 214 LLEKRP 219 (264)
T ss_pred HHHhCC
Confidence 666665
No 105
>PF05401 NodS: Nodulation protein S (NodS); InterPro: IPR008715 This entry consists of nodulation S (NodS) proteins. The products of the rhizobial nodulation genes are involved in the biosynthesis of lipochitin oligosaccharides (LCOs), which are host-specific signal molecules required for nodule formation. NodS is an S-adenosyl-L-methionine (SAM)-dependent methyltransferase involved in N methylation of LCOs. NodS uses N-deacetylated chitooligosaccharides, the products of the NodBC proteins, as its methyl acceptors [].; GO: 0008757 S-adenosylmethionine-dependent methyltransferase activity, 0009312 oligosaccharide biosynthetic process, 0009877 nodulation; PDB: 3OFK_D 3OFJ_A.
Probab=99.25 E-value=3.3e-11 Score=99.06 Aligned_cols=148 Identities=14% Similarity=0.111 Sum_probs=93.6
Q ss_pred CCCcEEEEcCcccHHHHHHHHHCCCceEEEEECChHHHHHHHHhcCccccccCCCCcEEEEEccccccccCCCeeEEEEc
Q 035593 77 PPGPIGILGFGAGSAARLILDLYPEAVIHGWELDPSVIKVAREFFALEKLEKSYPDRLFVYVGNALKASLKDGFSGILVD 156 (269)
Q Consensus 77 ~~~~VL~iG~G~G~~~~~l~~~~p~~~v~~vEidp~~~~~a~~~~~~~~~~~~~~~rv~~~~~D~~~~~~~~~yD~I~~d 156 (269)
.-.++||+|||.|.++..|+.++ .+++++|+++..++.||++..- .++|+++++|..++.+.++||+|++.
T Consensus 43 ry~~alEvGCs~G~lT~~LA~rC--d~LlavDis~~Al~~Ar~Rl~~-------~~~V~~~~~dvp~~~P~~~FDLIV~S 113 (201)
T PF05401_consen 43 RYRRALEVGCSIGVLTERLAPRC--DRLLAVDISPRALARARERLAG-------LPHVEWIQADVPEFWPEGRFDLIVLS 113 (201)
T ss_dssp SEEEEEEE--TTSHHHHHHGGGE--EEEEEEES-HHHHHHHHHHTTT--------SSEEEEES-TTT---SS-EEEEEEE
T ss_pred ccceeEecCCCccHHHHHHHHhh--CceEEEeCCHHHHHHHHHhcCC-------CCCeEEEECcCCCCCCCCCeeEEEEe
Confidence 35789999999999999998864 5899999999999999999862 36899999999988888999999974
Q ss_pred CCCCCCCCCCCCc----HHHHHHHHhhccCCcEEEEEecCCCccccccccchhHHHHHHHHHHHHHhcCceEEEEcC-CC
Q 035593 157 LFSKGSLLSELED----PNTWEKLRQCLRKGGRIMVNVGGSCVEAEDSRRDGKVVMEATLKAMHKVFGKKLYVLSLG-NR 231 (269)
Q Consensus 157 ~~~~~~~~~~l~~----~e~~~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~F~~~v~~~~~~-~~ 231 (269)
- +...+.. ..+++.+.++|+|||.+++-.+.... -...........+...+.+.|- .+-.+.+. ..
T Consensus 114 E-----VlYYL~~~~~L~~~l~~l~~~L~pgG~LV~g~~rd~~---c~~wgh~~ga~tv~~~~~~~~~-~~~~~~~~~~~ 184 (201)
T PF05401_consen 114 E-----VLYYLDDAEDLRAALDRLVAALAPGGHLVFGHARDAN---CRRWGHAAGAETVLEMLQEHLT-EVERVECRGGS 184 (201)
T ss_dssp S------GGGSSSHHHHHHHHHHHHHTEEEEEEEEEEEE-HHH---HHHTT-S--HHHHHHHHHHHSE-EEEEEEEE-SS
T ss_pred h-----HhHcCCCHHHHHHHHHHHHHHhCCCCEEEEEEecCCc---ccccCcccchHHHHHHHHHHhh-heeEEEEcCCC
Confidence 2 2223322 35889999999999999986543210 0000001124456677777774 55555443 22
Q ss_pred Cc--eEEEEecCC
Q 035593 232 KD--DSLIALTGE 242 (269)
Q Consensus 232 ~n--~v~~~~~~~ 242 (269)
.| -++..+.+|
T Consensus 185 ~~~~~~~~~~~~~ 197 (201)
T PF05401_consen 185 PNEDCLLARFRNP 197 (201)
T ss_dssp TTSEEEEEEEE--
T ss_pred CCCceEeeeecCC
Confidence 33 345555555
No 106
>KOG4300 consensus Predicted methyltransferase [General function prediction only]
Probab=99.24 E-value=4.7e-11 Score=98.17 Aligned_cols=106 Identities=19% Similarity=0.243 Sum_probs=84.2
Q ss_pred CCcEEEEcCcccHHHHHHHHHCCCceEEEEECChHHHHHHHHhcCccccccCCCCcEE-EEEcccccc--ccCCCeeEEE
Q 035593 78 PGPIGILGFGAGSAARLILDLYPEAVIHGWELDPSVIKVAREFFALEKLEKSYPDRLF-VYVGNALKA--SLKDGFSGIL 154 (269)
Q Consensus 78 ~~~VL~iG~G~G~~~~~l~~~~p~~~v~~vEidp~~~~~a~~~~~~~~~~~~~~~rv~-~~~~D~~~~--~~~~~yD~I~ 154 (269)
...||++|||+|..-.+.-- .|+.+||++|.+|.|-+.+.+.+.... ..++. ++++++++. ..+.+||+|+
T Consensus 77 K~~vLEvgcGtG~Nfkfy~~-~p~~svt~lDpn~~mee~~~ks~~E~k-----~~~~~~fvva~ge~l~~l~d~s~DtVV 150 (252)
T KOG4300|consen 77 KGDVLEVGCGTGANFKFYPW-KPINSVTCLDPNEKMEEIADKSAAEKK-----PLQVERFVVADGENLPQLADGSYDTVV 150 (252)
T ss_pred ccceEEecccCCCCcccccC-CCCceEEEeCCcHHHHHHHHHHHhhcc-----CcceEEEEeechhcCcccccCCeeeEE
Confidence 45789999999999887543 378899999999999999999885432 35677 999999998 4788999998
Q ss_pred EcCCCCCCCCCCCCcHHHHHHHHhhccCCcEEEEEecCC
Q 035593 155 VDLFSKGSLLSELEDPNTWEKLRQCLRKGGRIMVNVGGS 193 (269)
Q Consensus 155 ~d~~~~~~~~~~l~~~e~~~~~~~~L~pgG~l~~~~~~~ 193 (269)
.-.. ...+-...+.++++++.|+|||++++.-...
T Consensus 151 ~Tlv----LCSve~~~k~L~e~~rlLRpgG~iifiEHva 185 (252)
T KOG4300|consen 151 CTLV----LCSVEDPVKQLNEVRRLLRPGGRIIFIEHVA 185 (252)
T ss_pred EEEE----EeccCCHHHHHHHHHHhcCCCcEEEEEeccc
Confidence 6421 2223335799999999999999999866544
No 107
>PRK15128 23S rRNA m(5)C1962 methyltransferase; Provisional
Probab=99.24 E-value=1e-10 Score=107.71 Aligned_cols=114 Identities=16% Similarity=0.015 Sum_probs=83.9
Q ss_pred CCCCcEEEEcCcccHHHHHHHHHCCCceEEEEECChHHHHHHHHhcCccccccCCCCcEEEEEcccccc-c----cCCCe
Q 035593 76 LPPGPIGILGFGAGSAARLILDLYPEAVIHGWELDPSVIKVAREFFALEKLEKSYPDRLFVYVGNALKA-S----LKDGF 150 (269)
Q Consensus 76 ~~~~~VL~iG~G~G~~~~~l~~~~p~~~v~~vEidp~~~~~a~~~~~~~~~~~~~~~rv~~~~~D~~~~-~----~~~~y 150 (269)
.++++|||+|||+|.++..++. ....+|++||+|+.+++.|++++..+.. ...+++++.+|+.++ . ..++|
T Consensus 219 ~~g~rVLDlfsgtG~~~l~aa~-~ga~~V~~VD~s~~al~~a~~N~~~Ngl---~~~~v~~i~~D~~~~l~~~~~~~~~f 294 (396)
T PRK15128 219 VENKRVLNCFSYTGGFAVSALM-GGCSQVVSVDTSQEALDIARQNVELNKL---DLSKAEFVRDDVFKLLRTYRDRGEKF 294 (396)
T ss_pred cCCCeEEEeccCCCHHHHHHHh-CCCCEEEEEECCHHHHHHHHHHHHHcCC---CCCcEEEEEccHHHHHHHHHhcCCCC
Confidence 4678999999999999887665 2345999999999999999999866531 124799999999987 1 35689
Q ss_pred eEEEEcCCCCCCCCCCC-----CcHHHHHHHHhhccCCcEEEEEecCC
Q 035593 151 SGILVDLFSKGSLLSEL-----EDPNTWEKLRQCLRKGGRIMVNVGGS 193 (269)
Q Consensus 151 D~I~~d~~~~~~~~~~l-----~~~e~~~~~~~~L~pgG~l~~~~~~~ 193 (269)
|+|++|++.-......+ .-.++++.+.+.|+|||++++...+.
T Consensus 295 DlVilDPP~f~~~k~~l~~~~~~y~~l~~~a~~lLk~gG~lv~~scs~ 342 (396)
T PRK15128 295 DVIVMDPPKFVENKSQLMGACRGYKDINMLAIQLLNPGGILLTFSCSG 342 (396)
T ss_pred CEEEECCCCCCCChHHHHHHHHHHHHHHHHHHHHcCCCeEEEEEeCCC
Confidence 99999965421110011 12356677889999999988755544
No 108
>PTZ00146 fibrillarin; Provisional
Probab=99.24 E-value=7.5e-10 Score=97.10 Aligned_cols=148 Identities=18% Similarity=0.252 Sum_probs=96.1
Q ss_pred CCCCCcEEEEcCcccHHHHHHHHHCC-CceEEEEECChHHHHHHHHhcCccccccCCCCcEEEEEcccccc----ccCCC
Q 035593 75 ILPPGPIGILGFGAGSAARLILDLYP-EAVIHGWELDPSVIKVAREFFALEKLEKSYPDRLFVYVGNALKA----SLKDG 149 (269)
Q Consensus 75 l~~~~~VL~iG~G~G~~~~~l~~~~p-~~~v~~vEidp~~~~~a~~~~~~~~~~~~~~~rv~~~~~D~~~~----~~~~~ 149 (269)
+.|..+|||||||+|..+..+++... ..+|++||+++++.+...+.... .+++..+.+|++.- ...+.
T Consensus 130 IkpG~~VLDLGaG~G~~t~~lAdiVG~~G~VyAVD~s~r~~~dLl~~ak~-------r~NI~~I~~Da~~p~~y~~~~~~ 202 (293)
T PTZ00146 130 IKPGSKVLYLGAASGTTVSHVSDLVGPEGVVYAVEFSHRSGRDLTNMAKK-------RPNIVPIIEDARYPQKYRMLVPM 202 (293)
T ss_pred cCCCCEEEEeCCcCCHHHHHHHHHhCCCCEEEEEECcHHHHHHHHHHhhh-------cCCCEEEECCccChhhhhcccCC
Confidence 56788999999999999999998763 56999999999765433333211 24689999998742 23458
Q ss_pred eeEEEEcCCCCCCCCCCCCcHHHHHHHHhhccCCcEEEEEecCCCccccccccchhHHHHHHHHHHHHH-hcCceEEEEc
Q 035593 150 FSGILVDLFSKGSLLSELEDPNTWEKLRQCLRKGGRIMVNVGGSCVEAEDSRRDGKVVMEATLKAMHKV-FGKKLYVLSL 228 (269)
Q Consensus 150 yD~I~~d~~~~~~~~~~l~~~e~~~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-F~~~v~~~~~ 228 (269)
+|+|++|...++ ....+..++++.|||||.|++.+-..+. ....+.+..+.+.++.|++. |. .+..+..
T Consensus 203 vDvV~~Dva~pd------q~~il~~na~r~LKpGG~~vI~ika~~i---d~g~~pe~~f~~ev~~L~~~GF~-~~e~v~L 272 (293)
T PTZ00146 203 VDVIFADVAQPD------QARIVALNAQYFLKNGGHFIISIKANCI---DSTAKPEVVFASEVQKLKKEGLK-PKEQLTL 272 (293)
T ss_pred CCEEEEeCCCcc------hHHHHHHHHHHhccCCCEEEEEEecccc---ccCCCHHHHHHHHHHHHHHcCCc-eEEEEec
Confidence 999999975321 1235667899999999999984322221 11112233344556778887 84 4444444
Q ss_pred CC--CCceEEEEe
Q 035593 229 GN--RKDDSLIAL 239 (269)
Q Consensus 229 ~~--~~n~v~~~~ 239 (269)
+. ....++++.
T Consensus 273 ~Py~~~h~~v~~~ 285 (293)
T PTZ00146 273 EPFERDHAVVIGV 285 (293)
T ss_pred CCccCCcEEEEEE
Confidence 32 233444444
No 109
>KOG1270 consensus Methyltransferases [Coenzyme transport and metabolism]
Probab=99.24 E-value=1.5e-11 Score=104.64 Aligned_cols=106 Identities=16% Similarity=0.215 Sum_probs=79.7
Q ss_pred CcEEEEcCcccHHHHHHHHHCCCceEEEEECChHHHHHHHHhcCccccc-cCCCCcEEEEEccccccccCCCeeEEEEcC
Q 035593 79 GPIGILGFGAGSAARLILDLYPEAVIHGWELDPSVIKVAREFFALEKLE-KSYPDRLFVYVGNALKASLKDGFSGILVDL 157 (269)
Q Consensus 79 ~~VL~iG~G~G~~~~~l~~~~p~~~v~~vEidp~~~~~a~~~~~~~~~~-~~~~~rv~~~~~D~~~~~~~~~yD~I~~d~ 157 (269)
.+|||+|||+|.++..|++ -++.|+++|+++.+++.|+++....+.. ..-.-|+++.+.|+.... ++||+|++-
T Consensus 91 ~~ilDvGCGgGLLSepLAr--lga~V~GID~s~~~V~vA~~h~~~dP~~~~~~~y~l~~~~~~~E~~~--~~fDaVvcs- 165 (282)
T KOG1270|consen 91 MKILDVGCGGGLLSEPLAR--LGAQVTGIDASDDMVEVANEHKKMDPVLEGAIAYRLEYEDTDVEGLT--GKFDAVVCS- 165 (282)
T ss_pred ceEEEeccCccccchhhHh--hCCeeEeecccHHHHHHHHHhhhcCchhccccceeeehhhcchhhcc--cccceeeeH-
Confidence 7799999999999999998 3789999999999999999995443311 000125777777776653 349999963
Q ss_pred CCCCCCCCCC-CcHHHHHHHHhhccCCcEEEEEecCC
Q 035593 158 FSKGSLLSEL-EDPNTWEKLRQCLRKGGRIMVNVGGS 193 (269)
Q Consensus 158 ~~~~~~~~~l-~~~e~~~~~~~~L~pgG~l~~~~~~~ 193 (269)
.+..|. ..++|++.+.+.|+|+|.+.+...+.
T Consensus 166 ----evleHV~dp~~~l~~l~~~lkP~G~lfittinr 198 (282)
T KOG1270|consen 166 ----EVLEHVKDPQEFLNCLSALLKPNGRLFITTINR 198 (282)
T ss_pred ----HHHHHHhCHHHHHHHHHHHhCCCCceEeeehhh
Confidence 122222 24799999999999999999877654
No 110
>COG2890 HemK Methylase of polypeptide chain release factors [Translation, ribosomal structure and biogenesis]
Probab=99.24 E-value=3.2e-10 Score=99.89 Aligned_cols=106 Identities=20% Similarity=0.243 Sum_probs=80.3
Q ss_pred cEEEEcCcccHHHHHHHHHCCCceEEEEECChHHHHHHHHhcCccccccCCCCcEEEEEccccccccCCCeeEEEEcCCC
Q 035593 80 PIGILGFGAGSAARLILDLYPEAVIHGWELDPSVIKVAREFFALEKLEKSYPDRLFVYVGNALKASLKDGFSGILVDLFS 159 (269)
Q Consensus 80 ~VL~iG~G~G~~~~~l~~~~p~~~v~~vEidp~~~~~a~~~~~~~~~~~~~~~rv~~~~~D~~~~~~~~~yD~I~~d~~~ 159 (269)
+|||||||+|.++..+++..|.++|+++||||..++.|+++..... -.++.++.+|.+.-. .++||+|+++.+-
T Consensus 113 ~ilDlGTGSG~iai~la~~~~~~~V~a~Dis~~Al~~A~~Na~~~~-----l~~~~~~~~dlf~~~-~~~fDlIVsNPPY 186 (280)
T COG2890 113 RILDLGTGSGAIAIALAKEGPDAEVIAVDISPDALALARENAERNG-----LVRVLVVQSDLFEPL-RGKFDLIVSNPPY 186 (280)
T ss_pred cEEEecCChHHHHHHHHhhCcCCeEEEEECCHHHHHHHHHHHHHcC-----CccEEEEeeeccccc-CCceeEEEeCCCC
Confidence 7999999999999999999999999999999999999999975432 145667767655432 3399999987431
Q ss_pred CCCC-----C------C--CC--------CcHHHHHHHHhhccCCcEEEEEec
Q 035593 160 KGSL-----L------S--EL--------EDPNTWEKLRQCLRKGGRIMVNVG 191 (269)
Q Consensus 160 ~~~~-----~------~--~l--------~~~e~~~~~~~~L~pgG~l~~~~~ 191 (269)
-... + | .+ ....++..+.+.|+|||++++-+.
T Consensus 187 ip~~~~~~~~~~~~~EP~~Al~~g~dGl~~~~~i~~~a~~~l~~~g~l~le~g 239 (280)
T COG2890 187 IPAEDPELLPEVVRYEPLLALVGGGDGLEVYRRILGEAPDILKPGGVLILEIG 239 (280)
T ss_pred CCCcccccChhhhccCHHHHHccCccHHHHHHHHHHhhHHHcCCCcEEEEEEC
Confidence 1110 0 0 00 124678888999999999999875
No 111
>PF02390 Methyltransf_4: Putative methyltransferase ; InterPro: IPR003358 This entry represents tRNA (guanine-N-7) methyltransferase (2.1.1.33 from EC), which catalyses the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA. Capping of the pre-mRNA 5' end by addition a monomethylated guanosine cap (m(7)G) is an essential and the earliest modification in the biogenesis of mRNA []. The reaction is catalysed by three enzymes: triphosphatase, guanylyltransferase, and tRNA (guanine-N-7) methyltransferase [, ].; GO: 0008176 tRNA (guanine-N7-)-methyltransferase activity, 0006400 tRNA modification; PDB: 3DXZ_A 3DXY_A 3DXX_A 3CKK_A 3P2I_B 3P2K_D 3P2E_A 3MTE_B 3PB3_B 1YZH_B ....
Probab=99.23 E-value=1.7e-10 Score=96.33 Aligned_cols=122 Identities=16% Similarity=0.142 Sum_probs=93.3
Q ss_pred cEEEEcCcccHHHHHHHHHCCCceEEEEECChHHHHHHHHhcCccccccCCCCcEEEEEcccccc----ccCCCeeEEEE
Q 035593 80 PIGILGFGAGSAARLILDLYPEAVIHGWELDPSVIKVAREFFALEKLEKSYPDRLFVYVGNALKA----SLKDGFSGILV 155 (269)
Q Consensus 80 ~VL~iG~G~G~~~~~l~~~~p~~~v~~vEidp~~~~~a~~~~~~~~~~~~~~~rv~~~~~D~~~~----~~~~~yD~I~~ 155 (269)
-+||||||.|.....+++..|+..+.+||+....+..|.+...... -+++.++.+|+..+ ..+++.|.|++
T Consensus 20 l~lEIG~G~G~~l~~~A~~~Pd~n~iGiE~~~~~v~~a~~~~~~~~-----l~Nv~~~~~da~~~l~~~~~~~~v~~i~i 94 (195)
T PF02390_consen 20 LILEIGCGKGEFLIELAKRNPDINFIGIEIRKKRVAKALRKAEKRG-----LKNVRFLRGDARELLRRLFPPGSVDRIYI 94 (195)
T ss_dssp EEEEET-TTSHHHHHHHHHSTTSEEEEEES-HHHHHHHHHHHHHHT-----TSSEEEEES-CTTHHHHHSTTTSEEEEEE
T ss_pred eEEEecCCCCHHHHHHHHHCCCCCEEEEecchHHHHHHHHHHHhhc-----ccceEEEEccHHHHHhhcccCCchheEEE
Confidence 7999999999999999999999999999999999998887764332 46899999999985 45689999999
Q ss_pred cCCCCCCCC----CCCCcHHHHHHHHhhccCCcEEEEEecCCCccccccccchhHHHHHHHHHHHHH
Q 035593 156 DLFSKGSLL----SELEDPNTWEKLRQCLRKGGRIMVNVGGSCVEAEDSRRDGKVVMEATLKAMHKV 218 (269)
Q Consensus 156 d~~~~~~~~----~~l~~~e~~~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 218 (269)
..+++..-. ..+.+.+|++.+.++|+|||.+.+-.-. ..+...++..+.+.
T Consensus 95 ~FPDPWpK~rH~krRl~~~~fl~~~~~~L~~gG~l~~~TD~------------~~y~~~~~~~~~~~ 149 (195)
T PF02390_consen 95 NFPDPWPKKRHHKRRLVNPEFLELLARVLKPGGELYFATDV------------EEYAEWMLEQFEES 149 (195)
T ss_dssp ES-----SGGGGGGSTTSHHHHHHHHHHEEEEEEEEEEES-------------HHHHHHHHHHHHHH
T ss_pred eCCCCCcccchhhhhcCCchHHHHHHHHcCCCCEEEEEeCC------------HHHHHHHHHHHHhc
Confidence 887774321 2478899999999999999999886632 34566666666664
No 112
>PRK10901 16S rRNA methyltransferase B; Provisional
Probab=99.23 E-value=2.7e-10 Score=106.24 Aligned_cols=114 Identities=19% Similarity=0.186 Sum_probs=88.4
Q ss_pred CCCCCcEEEEcCcccHHHHHHHHHCCCceEEEEECChHHHHHHHHhcCccccccCCCCcEEEEEcccccc---ccCCCee
Q 035593 75 ILPPGPIGILGFGAGSAARLILDLYPEAVIHGWELDPSVIKVAREFFALEKLEKSYPDRLFVYVGNALKA---SLKDGFS 151 (269)
Q Consensus 75 l~~~~~VL~iG~G~G~~~~~l~~~~p~~~v~~vEidp~~~~~a~~~~~~~~~~~~~~~rv~~~~~D~~~~---~~~~~yD 151 (269)
..++.+|||+|||+|..+..+++..++.+|+++|+++.+++.+++++... +.+++++.+|+... ...++||
T Consensus 242 ~~~g~~VLDlgaG~G~~t~~la~~~~~~~v~a~D~s~~~l~~~~~n~~~~------g~~~~~~~~D~~~~~~~~~~~~fD 315 (427)
T PRK10901 242 PQNGERVLDACAAPGGKTAHILELAPQAQVVALDIDAQRLERVRENLQRL------GLKATVIVGDARDPAQWWDGQPFD 315 (427)
T ss_pred CCCCCEEEEeCCCCChHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHHc------CCCeEEEEcCcccchhhcccCCCC
Confidence 45688999999999999999999877789999999999999999987532 12478999999875 2356899
Q ss_pred EEEEcCCCCC-CC----CC--CCC-----------cHHHHHHHHhhccCCcEEEEEecCCC
Q 035593 152 GILVDLFSKG-SL----LS--ELE-----------DPNTWEKLRQCLRKGGRIMVNVGGSC 194 (269)
Q Consensus 152 ~I~~d~~~~~-~~----~~--~l~-----------~~e~~~~~~~~L~pgG~l~~~~~~~~ 194 (269)
.|++|++... +. +. ... ..++++.+.+.|+|||.+++...+..
T Consensus 316 ~Vl~D~Pcs~~G~~~~~p~~~~~~~~~~l~~l~~~q~~iL~~a~~~LkpGG~lvystcs~~ 376 (427)
T PRK10901 316 RILLDAPCSATGVIRRHPDIKWLRRPEDIAALAALQSEILDALWPLLKPGGTLLYATCSIL 376 (427)
T ss_pred EEEECCCCCcccccccCccccccCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCCCC
Confidence 9999975331 11 11 011 13689999999999999998877654
No 113
>smart00650 rADc Ribosomal RNA adenine dimethylases.
Probab=99.23 E-value=1.8e-10 Score=93.97 Aligned_cols=101 Identities=26% Similarity=0.259 Sum_probs=77.8
Q ss_pred CCCCCcEEEEcCcccHHHHHHHHHCCCceEEEEECChHHHHHHHHhcCccccccCCCCcEEEEEcccccc-ccCCCeeEE
Q 035593 75 ILPPGPIGILGFGAGSAARLILDLYPEAVIHGWELDPSVIKVAREFFALEKLEKSYPDRLFVYVGNALKA-SLKDGFSGI 153 (269)
Q Consensus 75 l~~~~~VL~iG~G~G~~~~~l~~~~p~~~v~~vEidp~~~~~a~~~~~~~~~~~~~~~rv~~~~~D~~~~-~~~~~yD~I 153 (269)
+.+..+|||||||+|.++..++++ +.+++++|+|+.+++.+++++.. .++++++.+|+.++ .....||.|
T Consensus 11 ~~~~~~vLEiG~G~G~lt~~l~~~--~~~v~~vE~~~~~~~~~~~~~~~-------~~~v~ii~~D~~~~~~~~~~~d~v 81 (169)
T smart00650 11 LRPGDTVLEIGPGKGALTEELLER--AARVTAIEIDPRLAPRLREKFAA-------ADNLTVIHGDALKFDLPKLQPYKV 81 (169)
T ss_pred CCCcCEEEEECCCccHHHHHHHhc--CCeEEEEECCHHHHHHHHHHhcc-------CCCEEEEECchhcCCccccCCCEE
Confidence 446679999999999999999985 67999999999999999998742 35799999999988 344469999
Q ss_pred EEcCCCCCCCCCCCCcHHHHHHHHhh--ccCCcEEEEEec
Q 035593 154 LVDLFSKGSLLSELEDPNTWEKLRQC--LRKGGRIMVNVG 191 (269)
Q Consensus 154 ~~d~~~~~~~~~~l~~~e~~~~~~~~--L~pgG~l~~~~~ 191 (269)
+.+.+- +. +.+.+..+.+. +.++|++++...
T Consensus 82 i~n~Py------~~-~~~~i~~~l~~~~~~~~~~l~~q~e 114 (169)
T smart00650 82 VGNLPY------NI-STPILFKLLEEPPAFRDAVLMVQKE 114 (169)
T ss_pred EECCCc------cc-HHHHHHHHHhcCCCcceEEEEEEHH
Confidence 986432 22 34555555543 347888888754
No 114
>PRK14968 putative methyltransferase; Provisional
Probab=99.23 E-value=5e-10 Score=92.35 Aligned_cols=112 Identities=16% Similarity=0.161 Sum_probs=82.6
Q ss_pred CCCCcEEEEcCcccHHHHHHHHHCCCceEEEEECChHHHHHHHHhcCccccccCCCCcEEEEEccccccccCCCeeEEEE
Q 035593 76 LPPGPIGILGFGAGSAARLILDLYPEAVIHGWELDPSVIKVAREFFALEKLEKSYPDRLFVYVGNALKASLKDGFSGILV 155 (269)
Q Consensus 76 ~~~~~VL~iG~G~G~~~~~l~~~~p~~~v~~vEidp~~~~~a~~~~~~~~~~~~~~~rv~~~~~D~~~~~~~~~yD~I~~ 155 (269)
.+.++|||+|||+|.++..+++. +.+|+++|+++++++.+++++....+ .+.++.++.+|..+.....+||+|++
T Consensus 22 ~~~~~vLd~G~G~G~~~~~l~~~--~~~v~~~D~s~~~~~~a~~~~~~~~~---~~~~~~~~~~d~~~~~~~~~~d~vi~ 96 (188)
T PRK14968 22 KKGDRVLEVGTGSGIVAIVAAKN--GKKVVGVDINPYAVECAKCNAKLNNI---RNNGVEVIRSDLFEPFRGDKFDVILF 96 (188)
T ss_pred cCCCEEEEEccccCHHHHHHHhh--cceEEEEECCHHHHHHHHHHHHHcCC---CCcceEEEeccccccccccCceEEEE
Confidence 46779999999999999999985 68999999999999999988753321 12238899999876544448999998
Q ss_pred cCCCCCCCCC-----------------CCCcHHHHHHHHhhccCCcEEEEEecC
Q 035593 156 DLFSKGSLLS-----------------ELEDPNTWEKLRQCLRKGGRIMVNVGG 192 (269)
Q Consensus 156 d~~~~~~~~~-----------------~l~~~e~~~~~~~~L~pgG~l~~~~~~ 192 (269)
+..-....+. ......+++++.+.|+|||.+++....
T Consensus 97 n~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~Lk~gG~~~~~~~~ 150 (188)
T PRK14968 97 NPPYLPTEEEEEWDDWLNYALSGGKDGREVIDRFLDEVGRYLKPGGRILLLQSS 150 (188)
T ss_pred CCCcCCCCchhhhhhhhhhhhccCcChHHHHHHHHHHHHHhcCCCeEEEEEEcc
Confidence 6432110000 001256899999999999998887644
No 115
>PHA03411 putative methyltransferase; Provisional
Probab=99.23 E-value=1.1e-10 Score=101.23 Aligned_cols=105 Identities=10% Similarity=0.090 Sum_probs=81.5
Q ss_pred CCCcEEEEcCcccHHHHHHHHHCCCceEEEEECChHHHHHHHHhcCccccccCCCCcEEEEEccccccccCCCeeEEEEc
Q 035593 77 PPGPIGILGFGAGSAARLILDLYPEAVIHGWELDPSVIKVAREFFALEKLEKSYPDRLFVYVGNALKASLKDGFSGILVD 156 (269)
Q Consensus 77 ~~~~VL~iG~G~G~~~~~l~~~~p~~~v~~vEidp~~~~~a~~~~~~~~~~~~~~~rv~~~~~D~~~~~~~~~yD~I~~d 156 (269)
+..+|||+|||+|.++..++++.+..+|++||+++.+++.|++.+ ++++++.+|++++....+||+|+++
T Consensus 64 ~~grVLDLGcGsGilsl~la~r~~~~~V~gVDisp~al~~Ar~n~----------~~v~~v~~D~~e~~~~~kFDlIIsN 133 (279)
T PHA03411 64 CTGKVLDLCAGIGRLSFCMLHRCKPEKIVCVELNPEFARIGKRLL----------PEAEWITSDVFEFESNEKFDVVISN 133 (279)
T ss_pred cCCeEEEcCCCCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhC----------cCCEEEECchhhhcccCCCcEEEEc
Confidence 467999999999999998888766789999999999999999864 2588999999988555789999997
Q ss_pred CCCCCC-CC---C-----------C-CCcHHHHHHHHhhccCCcEEEEEec
Q 035593 157 LFSKGS-LL---S-----------E-LEDPNTWEKLRQCLRKGGRIMVNVG 191 (269)
Q Consensus 157 ~~~~~~-~~---~-----------~-l~~~e~~~~~~~~L~pgG~l~~~~~ 191 (269)
.+-... .. . . +.-.+++......|+|+|.+.+-..
T Consensus 134 PPF~~l~~~d~~~~~~~~GG~~g~~~l~~~~~l~~v~~~L~p~G~~~~~ys 184 (279)
T PHA03411 134 PPFGKINTTDTKDVFEYTGGEFEFKVMTLGQKFADVGYFIVPTGSAGFAYS 184 (279)
T ss_pred CCccccCchhhhhhhhhccCccccccccHHHHHhhhHheecCCceEEEEEe
Confidence 543311 10 0 0 1125788999999999997665543
No 116
>TIGR00452 methyltransferase, putative. Known examples to date are restricted to the proteobacteria.
Probab=99.22 E-value=1.3e-10 Score=103.76 Aligned_cols=102 Identities=14% Similarity=0.088 Sum_probs=76.9
Q ss_pred CCCCcEEEEcCcccHHHHHHHHHCCCceEEEEECChHHHHHH---HHhcCccccccCCCCcEEEEEccccccccCCCeeE
Q 035593 76 LPPGPIGILGFGAGSAARLILDLYPEAVIHGWELDPSVIKVA---REFFALEKLEKSYPDRLFVYVGNALKASLKDGFSG 152 (269)
Q Consensus 76 ~~~~~VL~iG~G~G~~~~~l~~~~p~~~v~~vEidp~~~~~a---~~~~~~~~~~~~~~~rv~~~~~D~~~~~~~~~yD~ 152 (269)
.++++|||||||+|.++..++...+ ..|+++|+++.|+..+ ++.... ..++.+...|+.+......||+
T Consensus 120 ~~g~~VLDvGCG~G~~~~~~~~~g~-~~v~GiDpS~~ml~q~~~~~~~~~~-------~~~v~~~~~~ie~lp~~~~FD~ 191 (314)
T TIGR00452 120 LKGRTILDVGCGSGYHMWRMLGHGA-KSLVGIDPTVLFLCQFEAVRKLLDN-------DKRAILEPLGIEQLHELYAFDT 191 (314)
T ss_pred CCCCEEEEeccCCcHHHHHHHHcCC-CEEEEEcCCHHHHHHHHHHHHHhcc-------CCCeEEEECCHHHCCCCCCcCE
Confidence 4578999999999999988887533 4799999999998654 333221 3578888888887744458999
Q ss_pred EEEcCCCCCCCCCCC-CcHHHHHHHHhhccCCcEEEEEe
Q 035593 153 ILVDLFSKGSLLSEL-EDPNTWEKLRQCLRKGGRIMVNV 190 (269)
Q Consensus 153 I~~d~~~~~~~~~~l-~~~e~~~~~~~~L~pgG~l~~~~ 190 (269)
|++.. +..|. ...++++++++.|+|||.|++..
T Consensus 192 V~s~g-----vL~H~~dp~~~L~el~r~LkpGG~Lvlet 225 (314)
T TIGR00452 192 VFSMG-----VLYHRKSPLEHLKQLKHQLVIKGELVLET 225 (314)
T ss_pred EEEcc-----hhhccCCHHHHHHHHHHhcCCCCEEEEEE
Confidence 99742 12222 23589999999999999999864
No 117
>TIGR03587 Pse_Me-ase pseudaminic acid biosynthesis-associated methylase. Members of this small clade are methyltransferases of the pfam08241 family and are observed within operons for the biosynthesis of pseudaminic acid, a component of exopolysaccharide and flagellin glycosyl modifications. Notable among these genomes is Pseudomonas fluorescens PfO-1. Possibly one of the two hydroxyl groups of pseudaminic acid, at positions 4 and 8 is converted to a methoxy group by this enzyme
Probab=99.22 E-value=1.4e-10 Score=97.59 Aligned_cols=133 Identities=16% Similarity=0.175 Sum_probs=87.0
Q ss_pred CCCCCcEEEEcCcccHHHHHHHHHCCCceEEEEECChHHHHHHHHhcCccccccCCCCcEEEEEccccccccCCCeeEEE
Q 035593 75 ILPPGPIGILGFGAGSAARLILDLYPEAVIHGWELDPSVIKVAREFFALEKLEKSYPDRLFVYVGNALKASLKDGFSGIL 154 (269)
Q Consensus 75 l~~~~~VL~iG~G~G~~~~~l~~~~p~~~v~~vEidp~~~~~a~~~~~~~~~~~~~~~rv~~~~~D~~~~~~~~~yD~I~ 154 (269)
+.++.+|||||||+|..+..+++..|+.++++||+|+++++.|++++ ++++++.+|+.+....++||+|+
T Consensus 41 ~~~~~~VLDiGCG~G~~~~~L~~~~~~~~v~giDiS~~~l~~A~~~~----------~~~~~~~~d~~~~~~~~sfD~V~ 110 (204)
T TIGR03587 41 LPKIASILELGANIGMNLAALKRLLPFKHIYGVEINEYAVEKAKAYL----------PNINIIQGSLFDPFKDNFFDLVL 110 (204)
T ss_pred cCCCCcEEEEecCCCHHHHHHHHhCCCCeEEEEECCHHHHHHHHhhC----------CCCcEEEeeccCCCCCCCEEEEE
Confidence 44678999999999999999998778899999999999999999864 24678888987754567999999
Q ss_pred EcCCCCCCCCCCCCcHHHHHHHHhhccCCcEEEEEecCCCcccccccc--chhHHHHHHHHHHHHHhcC
Q 035593 155 VDLFSKGSLLSELEDPNTWEKLRQCLRKGGRIMVNVGGSCVEAEDSRR--DGKVVMEATLKAMHKVFGK 221 (269)
Q Consensus 155 ~d~~~~~~~~~~l~~~e~~~~~~~~L~pgG~l~~~~~~~~~~~~~~~~--~~~~~~~~~~~~l~~~F~~ 221 (269)
+...-. ...+ -...++++++.+.++ +-+++.....+.. .+.+.+ .+.-..+.....+.+.|++
T Consensus 111 ~~~vL~-hl~p-~~~~~~l~el~r~~~-~~v~i~e~~~~~~-~~~~y~~~~~~~~~~d~~~~~~~~~~~ 175 (204)
T TIGR03587 111 TKGVLI-HINP-DNLPTAYRELYRCSN-RYILIAEYYNPSP-VEISYRGNSGRLWKRDFAGEMMDRYPD 175 (204)
T ss_pred ECChhh-hCCH-HHHHHHHHHHHhhcC-cEEEEEEeeCCCc-eeeeeeCCcchhhhhhHHHHHHHhCCc
Confidence 753211 1111 113578888888873 2333434433211 111111 1122334455667777863
No 118
>PRK14904 16S rRNA methyltransferase B; Provisional
Probab=99.21 E-value=2.3e-10 Score=107.28 Aligned_cols=115 Identities=16% Similarity=0.160 Sum_probs=89.0
Q ss_pred CCCCCcEEEEcCcccHHHHHHHHHCC-CceEEEEECChHHHHHHHHhcCccccccCCCCcEEEEEccccccccCCCeeEE
Q 035593 75 ILPPGPIGILGFGAGSAARLILDLYP-EAVIHGWELDPSVIKVAREFFALEKLEKSYPDRLFVYVGNALKASLKDGFSGI 153 (269)
Q Consensus 75 l~~~~~VL~iG~G~G~~~~~l~~~~p-~~~v~~vEidp~~~~~a~~~~~~~~~~~~~~~rv~~~~~D~~~~~~~~~yD~I 153 (269)
..++.+|||+|||+|..+..+++..+ ..+|+++|+++.+++.+++++...+ -.+++++.+|+..+....+||+|
T Consensus 248 ~~~g~~VLDlgaG~G~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~g-----~~~v~~~~~Da~~~~~~~~fD~V 322 (445)
T PRK14904 248 PQPGSTVLDLCAAPGGKSTFMAELMQNRGQITAVDRYPQKLEKIRSHASALG-----ITIIETIEGDARSFSPEEQPDAI 322 (445)
T ss_pred CCCCCEEEEECCCCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHhC-----CCeEEEEeCcccccccCCCCCEE
Confidence 34678999999999999998887654 5699999999999999998874322 23699999999887555689999
Q ss_pred EEcCCCCC-CC----CC---CCC----------cHHHHHHHHhhccCCcEEEEEecCCC
Q 035593 154 LVDLFSKG-SL----LS---ELE----------DPNTWEKLRQCLRKGGRIMVNVGGSC 194 (269)
Q Consensus 154 ~~d~~~~~-~~----~~---~l~----------~~e~~~~~~~~L~pgG~l~~~~~~~~ 194 (269)
++|++... +. +. ... ..++++.+.+.|+|||++++...+..
T Consensus 323 l~D~Pcsg~g~~~r~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~lkpgG~lvystcs~~ 381 (445)
T PRK14904 323 LLDAPCTGTGVLGRRAELRWKLTPEKLAELVGLQAELLDHAASLLKPGGVLVYATCSIE 381 (445)
T ss_pred EEcCCCCCcchhhcCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeCCCC
Confidence 99965432 11 10 111 23689999999999999999988764
No 119
>PHA03412 putative methyltransferase; Provisional
Probab=99.21 E-value=1.1e-10 Score=99.08 Aligned_cols=99 Identities=16% Similarity=0.098 Sum_probs=74.5
Q ss_pred CCCcEEEEcCcccHHHHHHHHHC---CCceEEEEECChHHHHHHHHhcCccccccCCCCcEEEEEccccccccCCCeeEE
Q 035593 77 PPGPIGILGFGAGSAARLILDLY---PEAVIHGWELDPSVIKVAREFFALEKLEKSYPDRLFVYVGNALKASLKDGFSGI 153 (269)
Q Consensus 77 ~~~~VL~iG~G~G~~~~~l~~~~---p~~~v~~vEidp~~~~~a~~~~~~~~~~~~~~~rv~~~~~D~~~~~~~~~yD~I 153 (269)
.+.+|||+|||+|.++..++++. +..+|++||||+.++++|+++. ++++++.+|+..+....+||+|
T Consensus 49 ~~grVLDlG~GSG~Lalala~~~~~~~~~~V~aVEID~~Al~~Ar~n~----------~~~~~~~~D~~~~~~~~~FDlI 118 (241)
T PHA03412 49 TSGSVVDLCAGIGGLSFAMVHMMMYAKPREIVCVELNHTYYKLGKRIV----------PEATWINADALTTEFDTLFDMA 118 (241)
T ss_pred CCCEEEEccChHHHHHHHHHHhcccCCCcEEEEEECCHHHHHHHHhhc----------cCCEEEEcchhcccccCCccEE
Confidence 36799999999999999998864 3569999999999999999864 2488999999877445689999
Q ss_pred EEcCCCCCCCCC--------CCCcHHHHHHHHhhccCCcE
Q 035593 154 LVDLFSKGSLLS--------ELEDPNTWEKLRQCLRKGGR 185 (269)
Q Consensus 154 ~~d~~~~~~~~~--------~l~~~e~~~~~~~~L~pgG~ 185 (269)
|++.+-...... .+....+++.+.+.+++|+.
T Consensus 119 IsNPPY~~~~~~d~~ar~~g~~~~~~li~~A~~Ll~~G~~ 158 (241)
T PHA03412 119 ISNPPFGKIKTSDFKGKYTGAEFEYKVIERASQIARQGTF 158 (241)
T ss_pred EECCCCCCccccccCCcccccHHHHHHHHHHHHHcCCCEE
Confidence 998643321111 12234688888885555554
No 120
>PRK14902 16S rRNA methyltransferase B; Provisional
Probab=99.21 E-value=5.3e-10 Score=104.83 Aligned_cols=115 Identities=17% Similarity=0.110 Sum_probs=87.5
Q ss_pred CCCCCcEEEEcCcccHHHHHHHHHC-CCceEEEEECChHHHHHHHHhcCccccccCCCCcEEEEEccccccc--cCCCee
Q 035593 75 ILPPGPIGILGFGAGSAARLILDLY-PEAVIHGWELDPSVIKVAREFFALEKLEKSYPDRLFVYVGNALKAS--LKDGFS 151 (269)
Q Consensus 75 l~~~~~VL~iG~G~G~~~~~l~~~~-p~~~v~~vEidp~~~~~a~~~~~~~~~~~~~~~rv~~~~~D~~~~~--~~~~yD 151 (269)
..+..+|||+|||+|..+..++++. ++.+|+++|+++.+++.+++++...+ -.+++++.+|+.++. ..++||
T Consensus 248 ~~~g~~VLDlgaG~G~~t~~la~~~~~~~~v~avDi~~~~l~~~~~n~~~~g-----~~~v~~~~~D~~~~~~~~~~~fD 322 (444)
T PRK14902 248 PKGGDTVLDACAAPGGKTTHIAELLKNTGKVVALDIHEHKLKLIEENAKRLG-----LTNIETKALDARKVHEKFAEKFD 322 (444)
T ss_pred CCCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcC-----CCeEEEEeCCcccccchhcccCC
Confidence 4567899999999999999999876 56799999999999999999874322 134999999998762 236899
Q ss_pred EEEEcCCCCC-CC----CCC---C----------CcHHHHHHHHhhccCCcEEEEEecCCC
Q 035593 152 GILVDLFSKG-SL----LSE---L----------EDPNTWEKLRQCLRKGGRIMVNVGGSC 194 (269)
Q Consensus 152 ~I~~d~~~~~-~~----~~~---l----------~~~e~~~~~~~~L~pgG~l~~~~~~~~ 194 (269)
+|++|++... +. +.. . ...++++.+.+.|+|||.++....+..
T Consensus 323 ~Vl~D~Pcsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~LkpGG~lvystcs~~ 383 (444)
T PRK14902 323 KILVDAPCSGLGVIRRKPDIKYNKTKEDIESLQEIQLEILESVAQYLKKGGILVYSTCTIE 383 (444)
T ss_pred EEEEcCCCCCCeeeccCcchhhcCCHHHHHHHHHHHHHHHHHHHHHcCCCCEEEEEcCCCC
Confidence 9999975321 11 100 0 124689999999999999998766543
No 121
>PRK15068 tRNA mo(5)U34 methyltransferase; Provisional
Probab=99.20 E-value=1.8e-10 Score=103.53 Aligned_cols=102 Identities=12% Similarity=0.104 Sum_probs=77.5
Q ss_pred CCCcEEEEcCcccHHHHHHHHHCCCceEEEEECChHHHHHHHH--hcCccccccCCCCcEEEEEccccccccCCCeeEEE
Q 035593 77 PPGPIGILGFGAGSAARLILDLYPEAVIHGWELDPSVIKVARE--FFALEKLEKSYPDRLFVYVGNALKASLKDGFSGIL 154 (269)
Q Consensus 77 ~~~~VL~iG~G~G~~~~~l~~~~p~~~v~~vEidp~~~~~a~~--~~~~~~~~~~~~~rv~~~~~D~~~~~~~~~yD~I~ 154 (269)
++++|||||||+|..+..+++..+ ..|+++|+++.++..++. .+. . ...+++++.+|+.++...++||+|+
T Consensus 122 ~g~~VLDIGCG~G~~~~~la~~g~-~~V~GiD~S~~~l~q~~a~~~~~-~-----~~~~i~~~~~d~e~lp~~~~FD~V~ 194 (322)
T PRK15068 122 KGRTVLDVGCGNGYHMWRMLGAGA-KLVVGIDPSQLFLCQFEAVRKLL-G-----NDQRAHLLPLGIEQLPALKAFDTVF 194 (322)
T ss_pred CCCEEEEeccCCcHHHHHHHHcCC-CEEEEEcCCHHHHHHHHHHHHhc-C-----CCCCeEEEeCCHHHCCCcCCcCEEE
Confidence 478999999999999999988643 369999999999865432 221 1 1357999999998874477899999
Q ss_pred EcCCCCCCCCCCC-CcHHHHHHHHhhccCCcEEEEEe
Q 035593 155 VDLFSKGSLLSEL-EDPNTWEKLRQCLRKGGRIMVNV 190 (269)
Q Consensus 155 ~d~~~~~~~~~~l-~~~e~~~~~~~~L~pgG~l~~~~ 190 (269)
+-.. ..|. ....+++++++.|+|||.+++..
T Consensus 195 s~~v-----l~H~~dp~~~L~~l~~~LkpGG~lvl~~ 226 (322)
T PRK15068 195 SMGV-----LYHRRSPLDHLKQLKDQLVPGGELVLET 226 (322)
T ss_pred ECCh-----hhccCCHHHHHHHHHHhcCCCcEEEEEE
Confidence 7321 1122 23689999999999999998864
No 122
>TIGR03438 probable methyltransferase. This model represents a distinct set of uncharacterized proteins found in the bacteria. Analysis by PSI-BLAST shows remote sequence homology to methyltransferases
Probab=99.20 E-value=9.3e-11 Score=104.46 Aligned_cols=110 Identities=17% Similarity=0.173 Sum_probs=77.1
Q ss_pred CCCcEEEEcCcccHHHHHHHHHCC-CceEEEEECChHHHHHHHHhcCccccccCCCCcEEEEEcccccc-ccCCCe---e
Q 035593 77 PPGPIGILGFGAGSAARLILDLYP-EAVIHGWELDPSVIKVAREFFALEKLEKSYPDRLFVYVGNALKA-SLKDGF---S 151 (269)
Q Consensus 77 ~~~~VL~iG~G~G~~~~~l~~~~p-~~~v~~vEidp~~~~~a~~~~~~~~~~~~~~~rv~~~~~D~~~~-~~~~~y---D 151 (269)
++.+|||+|||+|..+..+++..+ +.++++||+|++|++.|++++.... ..-+++.+++|+.+. .....+ +
T Consensus 63 ~~~~iLELGcGtG~~t~~Ll~~l~~~~~~~~iDiS~~mL~~a~~~l~~~~----p~~~v~~i~gD~~~~~~~~~~~~~~~ 138 (301)
T TIGR03438 63 AGCELVELGSGSSRKTRLLLDALRQPARYVPIDISADALKESAAALAADY----PQLEVHGICADFTQPLALPPEPAAGR 138 (301)
T ss_pred CCCeEEecCCCcchhHHHHHHhhccCCeEEEEECCHHHHHHHHHHHHhhC----CCceEEEEEEcccchhhhhcccccCC
Confidence 567899999999999999998776 6899999999999999998763210 023577789999874 222222 2
Q ss_pred --EEEEcCCCCCCCCCCCCcHHHHHHHHhhccCCcEEEEEecC
Q 035593 152 --GILVDLFSKGSLLSELEDPNTWEKLRQCLRKGGRIMVNVGG 192 (269)
Q Consensus 152 --~I~~d~~~~~~~~~~l~~~e~~~~~~~~L~pgG~l~~~~~~ 192 (269)
+++++..-. ... .-....++++++++|+|||.+++.+..
T Consensus 139 ~~~~~~gs~~~-~~~-~~e~~~~L~~i~~~L~pgG~~lig~d~ 179 (301)
T TIGR03438 139 RLGFFPGSTIG-NFT-PEEAVAFLRRIRQLLGPGGGLLIGVDL 179 (301)
T ss_pred eEEEEeccccc-CCC-HHHHHHHHHHHHHhcCCCCEEEEeccC
Confidence 333322111 111 111347999999999999999976543
No 123
>PRK14903 16S rRNA methyltransferase B; Provisional
Probab=99.19 E-value=4.5e-10 Score=104.75 Aligned_cols=115 Identities=17% Similarity=0.176 Sum_probs=89.2
Q ss_pred CCCCCcEEEEcCcccHHHHHHHHHCC-CceEEEEECChHHHHHHHHhcCccccccCCCCcEEEEEccccccc--cCCCee
Q 035593 75 ILPPGPIGILGFGAGSAARLILDLYP-EAVIHGWELDPSVIKVAREFFALEKLEKSYPDRLFVYVGNALKAS--LKDGFS 151 (269)
Q Consensus 75 l~~~~~VL~iG~G~G~~~~~l~~~~p-~~~v~~vEidp~~~~~a~~~~~~~~~~~~~~~rv~~~~~D~~~~~--~~~~yD 151 (269)
..++.+|||+|||+|..+.++++... +.+|+++|+++.+++.+++++...+ -.+++++.+|+..+. ..++||
T Consensus 235 ~~~g~~VLD~cagpGgkt~~la~~~~~~g~V~a~Dis~~rl~~~~~n~~r~g-----~~~v~~~~~Da~~l~~~~~~~fD 309 (431)
T PRK14903 235 LEPGLRVLDTCAAPGGKTTAIAELMKDQGKILAVDISREKIQLVEKHAKRLK-----LSSIEIKIADAERLTEYVQDTFD 309 (431)
T ss_pred CCCCCEEEEeCCCccHHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHHcC-----CCeEEEEECchhhhhhhhhccCC
Confidence 45678999999999999999998763 6799999999999999998874221 235899999998762 456899
Q ss_pred EEEEcCCCCC-CCC---CCC--------------CcHHHHHHHHhhccCCcEEEEEecCCC
Q 035593 152 GILVDLFSKG-SLL---SEL--------------EDPNTWEKLRQCLRKGGRIMVNVGGSC 194 (269)
Q Consensus 152 ~I~~d~~~~~-~~~---~~l--------------~~~e~~~~~~~~L~pgG~l~~~~~~~~ 194 (269)
.|++|++... +.. +.. ...+.+..+.+.|+|||.++....+..
T Consensus 310 ~Vl~DaPCsg~G~~~~~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~LkpGG~LvYsTCs~~ 370 (431)
T PRK14903 310 RILVDAPCTSLGTARNHPEVLRRVNKEDFKKLSEIQLRIVSQAWKLLEKGGILLYSTCTVT 370 (431)
T ss_pred EEEECCCCCCCccccCChHHHHhCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEECCCC
Confidence 9999975532 111 100 125678999999999999999887764
No 124
>PRK05785 hypothetical protein; Provisional
Probab=99.19 E-value=4.9e-10 Score=95.78 Aligned_cols=89 Identities=11% Similarity=0.084 Sum_probs=70.7
Q ss_pred CCCcEEEEcCcccHHHHHHHHHCCCceEEEEECChHHHHHHHHhcCccccccCCCCcEEEEEcccccc-ccCCCeeEEEE
Q 035593 77 PPGPIGILGFGAGSAARLILDLYPEAVIHGWELDPSVIKVAREFFALEKLEKSYPDRLFVYVGNALKA-SLKDGFSGILV 155 (269)
Q Consensus 77 ~~~~VL~iG~G~G~~~~~l~~~~p~~~v~~vEidp~~~~~a~~~~~~~~~~~~~~~rv~~~~~D~~~~-~~~~~yD~I~~ 155 (269)
++.+|||||||+|.++..+++.+ +.+|+++|++++|++.|++.. ..+++|+... ..+++||+|++
T Consensus 51 ~~~~VLDlGcGtG~~~~~l~~~~-~~~v~gvD~S~~Ml~~a~~~~-------------~~~~~d~~~lp~~d~sfD~v~~ 116 (226)
T PRK05785 51 RPKKVLDVAAGKGELSYHFKKVF-KYYVVALDYAENMLKMNLVAD-------------DKVVGSFEALPFRDKSFDVVMS 116 (226)
T ss_pred CCCeEEEEcCCCCHHHHHHHHhc-CCEEEEECCCHHHHHHHHhcc-------------ceEEechhhCCCCCCCEEEEEe
Confidence 47899999999999999999875 679999999999999998641 2457888877 56789999997
Q ss_pred cCCCCCCCCCCCCcHHHHHHHHhhccCC
Q 035593 156 DLFSKGSLLSELEDPNTWEKLRQCLRKG 183 (269)
Q Consensus 156 d~~~~~~~~~~l~~~e~~~~~~~~L~pg 183 (269)
... .......+..+++++++|||.
T Consensus 117 ~~~----l~~~~d~~~~l~e~~RvLkp~ 140 (226)
T PRK05785 117 SFA----LHASDNIEKVIAEFTRVSRKQ 140 (226)
T ss_pred cCh----hhccCCHHHHHHHHHHHhcCc
Confidence 432 111123468999999999994
No 125
>TIGR00563 rsmB ribosomal RNA small subunit methyltransferase RsmB. The seed alignment is built from bacterial sequences only. Eukaryotic homologs include Nop2, a protein required for processing pre-rRNA, that is likely also a rRNA methyltransferase, although the fine specificity may differ. Cutoff scores are set to avoid treating archaeal and eukaroytic homologs automatically as functionally equivalent, although they may have very similar roles.
Probab=99.18 E-value=5.9e-10 Score=103.93 Aligned_cols=116 Identities=16% Similarity=0.190 Sum_probs=86.7
Q ss_pred CCCCCcEEEEcCcccHHHHHHHHHCCCceEEEEECChHHHHHHHHhcCccccccCCCCcEEEEEccccccc---cCCCee
Q 035593 75 ILPPGPIGILGFGAGSAARLILDLYPEAVIHGWELDPSVIKVAREFFALEKLEKSYPDRLFVYVGNALKAS---LKDGFS 151 (269)
Q Consensus 75 l~~~~~VL~iG~G~G~~~~~l~~~~p~~~v~~vEidp~~~~~a~~~~~~~~~~~~~~~rv~~~~~D~~~~~---~~~~yD 151 (269)
..++.+|||+|||+|..+..+++..++.+|+++|+++.+++.+++++...+. ..++++..+|+.... ..++||
T Consensus 236 ~~~g~~VLDlcag~G~kt~~la~~~~~~~v~a~D~~~~~l~~~~~n~~r~g~----~~~v~~~~~d~~~~~~~~~~~~fD 311 (426)
T TIGR00563 236 PQNEETILDACAAPGGKTTHILELAPQAQVVALDIHEHRLKRVYENLKRLGL----TIKAETKDGDGRGPSQWAENEQFD 311 (426)
T ss_pred CCCCCeEEEeCCCccHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHHcCC----CeEEEEeccccccccccccccccC
Confidence 3467899999999999999999887778999999999999999988743220 123445667776542 456899
Q ss_pred EEEEcCCCCC-CCC---CCC---C-----------cHHHHHHHHhhccCCcEEEEEecCCC
Q 035593 152 GILVDLFSKG-SLL---SEL---E-----------DPNTWEKLRQCLRKGGRIMVNVGGSC 194 (269)
Q Consensus 152 ~I~~d~~~~~-~~~---~~l---~-----------~~e~~~~~~~~L~pgG~l~~~~~~~~ 194 (269)
.|++|++... +.. +.+ . ..++++.+.+.|||||.+++..++..
T Consensus 312 ~VllDaPcSg~G~~~~~p~~~~~~~~~~~~~l~~lQ~~lL~~a~~~LkpgG~lvystcs~~ 372 (426)
T TIGR00563 312 RILLDAPCSATGVIRRHPDIKWLRKPRDIAELAELQSEILDAIWPLLKTGGTLVYATCSVL 372 (426)
T ss_pred EEEEcCCCCCCcccccCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeCCCC
Confidence 9999975332 221 110 0 25799999999999999999887764
No 126
>PRK06202 hypothetical protein; Provisional
Probab=99.15 E-value=5.6e-10 Score=95.69 Aligned_cols=103 Identities=15% Similarity=0.054 Sum_probs=75.2
Q ss_pred CCCCcEEEEcCcccHHHHHHHHH----CCCceEEEEECChHHHHHHHHhcCccccccCCCCcEEEEEcccccc-ccCCCe
Q 035593 76 LPPGPIGILGFGAGSAARLILDL----YPEAVIHGWELDPSVIKVAREFFALEKLEKSYPDRLFVYVGNALKA-SLKDGF 150 (269)
Q Consensus 76 ~~~~~VL~iG~G~G~~~~~l~~~----~p~~~v~~vEidp~~~~~a~~~~~~~~~~~~~~~rv~~~~~D~~~~-~~~~~y 150 (269)
.++.+|||||||+|.++..+++. .++.+|+++|++++|++.|++.... .++++...|+... ..+++|
T Consensus 59 ~~~~~iLDlGcG~G~~~~~L~~~~~~~g~~~~v~gvD~s~~~l~~a~~~~~~--------~~~~~~~~~~~~l~~~~~~f 130 (232)
T PRK06202 59 DRPLTLLDIGCGGGDLAIDLARWARRDGLRLEVTAIDPDPRAVAFARANPRR--------PGVTFRQAVSDELVAEGERF 130 (232)
T ss_pred CCCcEEEEeccCCCHHHHHHHHHHHhCCCCcEEEEEcCCHHHHHHHHhcccc--------CCCeEEEEecccccccCCCc
Confidence 35779999999999999888753 2457999999999999999987542 3466666666555 356789
Q ss_pred eEEEEcCCCCCCCCCCCCc---HHHHHHHHhhccCCcEEEEEecCC
Q 035593 151 SGILVDLFSKGSLLSELED---PNTWEKLRQCLRKGGRIMVNVGGS 193 (269)
Q Consensus 151 D~I~~d~~~~~~~~~~l~~---~e~~~~~~~~L~pgG~l~~~~~~~ 193 (269)
|+|++...- .|+.. .++++++++.++ |.++++....
T Consensus 131 D~V~~~~~l-----hh~~d~~~~~~l~~~~r~~~--~~~~i~dl~~ 169 (232)
T PRK06202 131 DVVTSNHFL-----HHLDDAEVVRLLADSAALAR--RLVLHNDLIR 169 (232)
T ss_pred cEEEECCee-----ecCChHHHHHHHHHHHHhcC--eeEEEecccc
Confidence 999985321 22222 469999999987 5666665543
No 127
>cd02440 AdoMet_MTases S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy). There are at least five structurally distinct families of AdoMet-MTases, class I being the largest and most diverse. Within this class enzymes can be classified by different substrate specificities (small molecules, lipids, nucleic acids, etc.) and different target atoms for methylation (nitrogen, oxygen, carbon, sulfur, etc.).
Probab=99.15 E-value=5.3e-10 Score=81.54 Aligned_cols=101 Identities=24% Similarity=0.301 Sum_probs=79.3
Q ss_pred cEEEEcCcccHHHHHHHHHCCCceEEEEECChHHHHHHHHhcCccccccCCCCcEEEEEccccccc--cCCCeeEEEEcC
Q 035593 80 PIGILGFGAGSAARLILDLYPEAVIHGWELDPSVIKVAREFFALEKLEKSYPDRLFVYVGNALKAS--LKDGFSGILVDL 157 (269)
Q Consensus 80 ~VL~iG~G~G~~~~~l~~~~p~~~v~~vEidp~~~~~a~~~~~~~~~~~~~~~rv~~~~~D~~~~~--~~~~yD~I~~d~ 157 (269)
+|+|+|||.|..+..+.+ .+..+++++|+++..++.+++...... ..+++++.+|..+.. ...+||+|+++.
T Consensus 1 ~ildig~G~G~~~~~~~~-~~~~~~~~~d~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~d~i~~~~ 74 (107)
T cd02440 1 RVLDLGCGTGALALALAS-GPGARVTGVDISPVALELARKAAAALL-----ADNVEVLKGDAEELPPEADESFDVIISDP 74 (107)
T ss_pred CeEEEcCCccHHHHHHhc-CCCCEEEEEeCCHHHHHHHHHHHhccc-----ccceEEEEcChhhhccccCCceEEEEEcc
Confidence 589999999999999987 567899999999999999985322111 357999999998873 567899999875
Q ss_pred CCCCCCCCCCCcHHHHHHHHhhccCCcEEEEE
Q 035593 158 FSKGSLLSELEDPNTWEKLRQCLRKGGRIMVN 189 (269)
Q Consensus 158 ~~~~~~~~~l~~~e~~~~~~~~L~pgG~l~~~ 189 (269)
..... .-....+++.+.+.|+++|.+++.
T Consensus 75 ~~~~~---~~~~~~~l~~~~~~l~~~g~~~~~ 103 (107)
T cd02440 75 PLHHL---VEDLARFLEEARRLLKPGGVLVLT 103 (107)
T ss_pred ceeeh---hhHHHHHHHHHHHHcCCCCEEEEE
Confidence 43210 123478999999999999999874
No 128
>PRK13255 thiopurine S-methyltransferase; Reviewed
Probab=99.14 E-value=6.6e-10 Score=94.42 Aligned_cols=108 Identities=13% Similarity=0.057 Sum_probs=77.7
Q ss_pred CCCCcEEEEcCcccHHHHHHHHHCCCceEEEEECChHHHHHHHHhcCcccc-------ccCCCCcEEEEEccccccc--c
Q 035593 76 LPPGPIGILGFGAGSAARLILDLYPEAVIHGWELDPSVIKVAREFFALEKL-------EKSYPDRLFVYVGNALKAS--L 146 (269)
Q Consensus 76 ~~~~~VL~iG~G~G~~~~~l~~~~p~~~v~~vEidp~~~~~a~~~~~~~~~-------~~~~~~rv~~~~~D~~~~~--~ 146 (269)
.+..+||++|||.|..+.+|++ .+.+|++||+++..++.+.+..++... ......+++++++|+.++. .
T Consensus 36 ~~~~rvL~~gCG~G~da~~LA~--~G~~V~avD~s~~Ai~~~~~~~~l~~~~~~~~~~~~~~~~~v~~~~~D~~~l~~~~ 113 (218)
T PRK13255 36 PAGSRVLVPLCGKSLDMLWLAE--QGHEVLGVELSELAVEQFFAENGLTPQTRQSGEFEHYQAGEITIYCGDFFALTAAD 113 (218)
T ss_pred CCCCeEEEeCCCChHhHHHHHh--CCCeEEEEccCHHHHHHHHHHcCCCccccccccccccccCceEEEECcccCCCccc
Confidence 3567999999999999999998 488999999999999987554333210 0112468999999999882 3
Q ss_pred CCCeeEEEEcCCCCCCCCCCCCcHHHHHHHHhhccCCcEEE
Q 035593 147 KDGFSGILVDLFSKGSLLSELEDPNTWEKLRQCLRKGGRIM 187 (269)
Q Consensus 147 ~~~yD~I~~d~~~~~~~~~~l~~~e~~~~~~~~L~pgG~l~ 187 (269)
...||+|+--..-. ..++. ....+++.+.+.|+|||.+.
T Consensus 114 ~~~fd~v~D~~~~~-~l~~~-~R~~~~~~l~~lL~pgG~~~ 152 (218)
T PRK13255 114 LADVDAVYDRAALI-ALPEE-MRERYVQQLAALLPAGCRGL 152 (218)
T ss_pred CCCeeEEEehHhHh-hCCHH-HHHHHHHHHHHHcCCCCeEE
Confidence 35899998322111 12221 24689999999999998543
No 129
>PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional
Probab=99.13 E-value=3.9e-10 Score=111.11 Aligned_cols=114 Identities=14% Similarity=0.071 Sum_probs=86.6
Q ss_pred CCCCcEEEEcCcccHHHHHHHHHCCCceEEEEECChHHHHHHHHhcCccccccCCCCcEEEEEcccccc--ccCCCeeEE
Q 035593 76 LPPGPIGILGFGAGSAARLILDLYPEAVIHGWELDPSVIKVAREFFALEKLEKSYPDRLFVYVGNALKA--SLKDGFSGI 153 (269)
Q Consensus 76 ~~~~~VL~iG~G~G~~~~~l~~~~p~~~v~~vEidp~~~~~a~~~~~~~~~~~~~~~rv~~~~~D~~~~--~~~~~yD~I 153 (269)
.++++|||+|||+|.++.++++. ...+|++||+|+.+++.|++++..+++ ...+++++.+|+.++ ...++||+|
T Consensus 537 ~~g~rVLDlf~gtG~~sl~aa~~-Ga~~V~~vD~s~~al~~a~~N~~~ng~---~~~~v~~i~~D~~~~l~~~~~~fDlI 612 (702)
T PRK11783 537 AKGKDFLNLFAYTGTASVHAALG-GAKSTTTVDMSNTYLEWAERNFALNGL---SGRQHRLIQADCLAWLKEAREQFDLI 612 (702)
T ss_pred cCCCeEEEcCCCCCHHHHHHHHC-CCCEEEEEeCCHHHHHHHHHHHHHhCC---CccceEEEEccHHHHHHHcCCCcCEE
Confidence 35789999999999999999973 345799999999999999999866542 125899999999887 335789999
Q ss_pred EEcCCCCCCCCC--CC-----CcHHHHHHHHhhccCCcEEEEEecCC
Q 035593 154 LVDLFSKGSLLS--EL-----EDPNTWEKLRQCLRKGGRIMVNVGGS 193 (269)
Q Consensus 154 ~~d~~~~~~~~~--~l-----~~~e~~~~~~~~L~pgG~l~~~~~~~ 193 (269)
++|++.-..... .. ...++++.+.+.|+|||++++.....
T Consensus 613 ilDPP~f~~~~~~~~~~~~~~~y~~l~~~a~~lL~~gG~l~~~~~~~ 659 (702)
T PRK11783 613 FIDPPTFSNSKRMEDSFDVQRDHVALIKDAKRLLRPGGTLYFSNNKR 659 (702)
T ss_pred EECCCCCCCCCccchhhhHHHHHHHHHHHHHHHcCCCCEEEEEeCCc
Confidence 999653211100 00 12467888899999999998866443
No 130
>PRK14901 16S rRNA methyltransferase B; Provisional
Probab=99.13 E-value=1.3e-09 Score=101.93 Aligned_cols=115 Identities=17% Similarity=0.109 Sum_probs=88.0
Q ss_pred CCCCCcEEEEcCcccHHHHHHHHHCC-CceEEEEECChHHHHHHHHhcCccccccCCCCcEEEEEccccccc-----cCC
Q 035593 75 ILPPGPIGILGFGAGSAARLILDLYP-EAVIHGWELDPSVIKVAREFFALEKLEKSYPDRLFVYVGNALKAS-----LKD 148 (269)
Q Consensus 75 l~~~~~VL~iG~G~G~~~~~l~~~~p-~~~v~~vEidp~~~~~a~~~~~~~~~~~~~~~rv~~~~~D~~~~~-----~~~ 148 (269)
..+..+|||+|||+|..+..+++... ..+|+++|+++.+++.+++++...+ -.+++++.+|+..+. ..+
T Consensus 250 ~~~g~~VLDl~ag~G~kt~~la~~~~~~g~v~a~D~~~~rl~~~~~n~~r~g-----~~~v~~~~~D~~~~~~~~~~~~~ 324 (434)
T PRK14901 250 PQPGEVILDACAAPGGKTTHIAELMGDQGEIWAVDRSASRLKKLQENAQRLG-----LKSIKILAADSRNLLELKPQWRG 324 (434)
T ss_pred CCCcCEEEEeCCCCchhHHHHHHHhCCCceEEEEcCCHHHHHHHHHHHHHcC-----CCeEEEEeCChhhcccccccccc
Confidence 34678999999999999999998754 5699999999999999998874322 235999999998762 246
Q ss_pred CeeEEEEcCCCCC-CC----CC--CCC-----------cHHHHHHHHhhccCCcEEEEEecCCC
Q 035593 149 GFSGILVDLFSKG-SL----LS--ELE-----------DPNTWEKLRQCLRKGGRIMVNVGGSC 194 (269)
Q Consensus 149 ~yD~I~~d~~~~~-~~----~~--~l~-----------~~e~~~~~~~~L~pgG~l~~~~~~~~ 194 (269)
+||.|++|++... +. +. ... ..++++.+.+.|||||.++....+..
T Consensus 325 ~fD~Vl~DaPCSg~G~~~r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~lkpgG~lvystcsi~ 388 (434)
T PRK14901 325 YFDRILLDAPCSGLGTLHRHPDARWRQTPEKIQELAPLQAELLESLAPLLKPGGTLVYATCTLH 388 (434)
T ss_pred cCCEEEEeCCCCcccccccCcchhhhCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCCCC
Confidence 8999999975331 11 11 000 35789999999999999998776654
No 131
>PRK10909 rsmD 16S rRNA m(2)G966-methyltransferase; Provisional
Probab=99.13 E-value=5.8e-10 Score=93.36 Aligned_cols=106 Identities=20% Similarity=0.030 Sum_probs=79.0
Q ss_pred CCCCcEEEEcCcccHHHHHHHHHCCCceEEEEECChHHHHHHHHhcCccccccCCCCcEEEEEcccccc--ccCCCeeEE
Q 035593 76 LPPGPIGILGFGAGSAARLILDLYPEAVIHGWELDPSVIKVAREFFALEKLEKSYPDRLFVYVGNALKA--SLKDGFSGI 153 (269)
Q Consensus 76 ~~~~~VL~iG~G~G~~~~~l~~~~p~~~v~~vEidp~~~~~a~~~~~~~~~~~~~~~rv~~~~~D~~~~--~~~~~yD~I 153 (269)
.+..+|||+|||+|.++..++.+. ..+|++||+++.+++.+++++.... -.+++++.+|+.++ ...++||+|
T Consensus 52 ~~~~~vLDl~~GsG~l~l~~lsr~-a~~V~~vE~~~~a~~~a~~Nl~~~~-----~~~v~~~~~D~~~~l~~~~~~fDlV 125 (199)
T PRK10909 52 IVDARCLDCFAGSGALGLEALSRY-AAGATLLEMDRAVAQQLIKNLATLK-----AGNARVVNTNALSFLAQPGTPHNVV 125 (199)
T ss_pred cCCCEEEEcCCCccHHHHHHHHcC-CCEEEEEECCHHHHHHHHHHHHHhC-----CCcEEEEEchHHHHHhhcCCCceEE
Confidence 356799999999999998765533 4699999999999999999875432 23699999999876 234579999
Q ss_pred EEcCCCCCCCCCCCCcHHHHHHHHhh--ccCCcEEEEEecC
Q 035593 154 LVDLFSKGSLLSELEDPNTWEKLRQC--LRKGGRIMVNVGG 192 (269)
Q Consensus 154 ~~d~~~~~~~~~~l~~~e~~~~~~~~--L~pgG~l~~~~~~ 192 (269)
++|++-... ...+.++.+.+. |+|+|++++....
T Consensus 126 ~~DPPy~~g-----~~~~~l~~l~~~~~l~~~~iv~ve~~~ 161 (199)
T PRK10909 126 FVDPPFRKG-----LLEETINLLEDNGWLADEALIYVESEV 161 (199)
T ss_pred EECCCCCCC-----hHHHHHHHHHHCCCcCCCcEEEEEecC
Confidence 998652111 134566666553 7899999887643
No 132
>smart00138 MeTrc Methyltransferase, chemotaxis proteins. Methylates methyl-accepting chemotaxis proteins to form gamma-glutamyl methyl ester residues.
Probab=99.11 E-value=2.4e-10 Score=99.91 Aligned_cols=109 Identities=19% Similarity=0.239 Sum_probs=78.0
Q ss_pred CCCcEEEEcCcccH----HHHHHHHHCC-----CceEEEEECChHHHHHHHHhcC-------cccc----------c---
Q 035593 77 PPGPIGILGFGAGS----AARLILDLYP-----EAVIHGWELDPSVIKVAREFFA-------LEKL----------E--- 127 (269)
Q Consensus 77 ~~~~VL~iG~G~G~----~~~~l~~~~p-----~~~v~~vEidp~~~~~a~~~~~-------~~~~----------~--- 127 (269)
++.+|+++|||+|. ++..+++..+ +.+|+++|+|+.|++.|++..- .++. +
T Consensus 99 ~~~ri~d~GCgtGee~YslA~~l~e~~~~~~~~~~~I~g~Dis~~~L~~Ar~~~y~~~~~~~~~~~~~~~yf~~~~~~~~ 178 (264)
T smart00138 99 RRVRIWSAGCSTGEEPYSLAMLLAETLPKAREPDVKILATDIDLKALEKARAGIYPERELEDLPKALLARYFSRVEDKYR 178 (264)
T ss_pred CCEEEEeccccCChHHHHHHHHHHHHhhhcCCCCeEEEEEECCHHHHHHHHcCCCCHHHHhcCCHHHHhhhEEeCCCeEE
Confidence 45799999999995 6666766554 4799999999999999997531 0000 0
Q ss_pred --cCCCCcEEEEEcccccc-ccCCCeeEEEEcCCCCCCCCCCC---CcHHHHHHHHhhccCCcEEEEEe
Q 035593 128 --KSYPDRLFVYVGNALKA-SLKDGFSGILVDLFSKGSLLSEL---EDPNTWEKLRQCLRKGGRIMVNV 190 (269)
Q Consensus 128 --~~~~~rv~~~~~D~~~~-~~~~~yD~I~~d~~~~~~~~~~l---~~~e~~~~~~~~L~pgG~l~~~~ 190 (269)
..-..++++.++|..+. ...++||+|++-- +..++ ....+++.+++.|+|||.+++-.
T Consensus 179 v~~~ir~~V~F~~~dl~~~~~~~~~fD~I~crn-----vl~yf~~~~~~~~l~~l~~~L~pGG~L~lg~ 242 (264)
T smart00138 179 VKPELKERVRFAKHNLLAESPPLGDFDLIFCRN-----VLIYFDEPTQRKLLNRFAEALKPGGYLFLGH 242 (264)
T ss_pred EChHHhCcCEEeeccCCCCCCccCCCCEEEech-----hHHhCCHHHHHHHHHHHHHHhCCCeEEEEEC
Confidence 00013689999999876 3467899999721 11122 23479999999999999999844
No 133
>COG0220 Predicted S-adenosylmethionine-dependent methyltransferase [General function prediction only]
Probab=99.09 E-value=1e-09 Score=93.42 Aligned_cols=107 Identities=17% Similarity=0.181 Sum_probs=90.8
Q ss_pred CcEEEEcCcccHHHHHHHHHCCCceEEEEECChHHHHHHHHhcCccccccCCCCcEEEEEcccccc----ccCCCeeEEE
Q 035593 79 GPIGILGFGAGSAARLILDLYPEAVIHGWELDPSVIKVAREFFALEKLEKSYPDRLFVYVGNALKA----SLKDGFSGIL 154 (269)
Q Consensus 79 ~~VL~iG~G~G~~~~~l~~~~p~~~v~~vEidp~~~~~a~~~~~~~~~~~~~~~rv~~~~~D~~~~----~~~~~yD~I~ 154 (269)
..+||||||.|.....++++.|+..+.+||+....+..|.+.....+ -+++.+++.||..+ ..+++.|-|+
T Consensus 50 pi~lEIGfG~G~~l~~~A~~nP~~nfiGiEi~~~~v~~~l~k~~~~~-----l~Nlri~~~DA~~~l~~~~~~~sl~~I~ 124 (227)
T COG0220 50 PIVLEIGFGMGEFLVEMAKKNPEKNFLGIEIRVPGVAKALKKIKELG-----LKNLRLLCGDAVEVLDYLIPDGSLDKIY 124 (227)
T ss_pred cEEEEECCCCCHHHHHHHHHCCCCCEEEEEEehHHHHHHHHHHHHcC-----CCcEEEEcCCHHHHHHhcCCCCCeeEEE
Confidence 47999999999999999999999999999999999999988775332 23799999999986 4555999999
Q ss_pred EcCCCCCCCC----CCCCcHHHHHHHHhhccCCcEEEEEe
Q 035593 155 VDLFSKGSLL----SELEDPNTWEKLRQCLRKGGRIMVNV 190 (269)
Q Consensus 155 ~d~~~~~~~~----~~l~~~e~~~~~~~~L~pgG~l~~~~ 190 (269)
+.-++++.-- ..+...+|++.+.+.|+|||.|.+-.
T Consensus 125 i~FPDPWpKkRH~KRRl~~~~fl~~~a~~Lk~gG~l~~aT 164 (227)
T COG0220 125 INFPDPWPKKRHHKRRLTQPEFLKLYARKLKPGGVLHFAT 164 (227)
T ss_pred EECCCCCCCccccccccCCHHHHHHHHHHccCCCEEEEEe
Confidence 9887775322 24788999999999999999998866
No 134
>PF13489 Methyltransf_23: Methyltransferase domain; PDB: 3JWJ_A 3JWH_B 2AOV_B 2AOT_A 1JQD_B 2AOX_A 1JQE_A 2AOU_B 2AOW_A 3DLI_C ....
Probab=99.09 E-value=7.7e-10 Score=88.58 Aligned_cols=97 Identities=19% Similarity=0.269 Sum_probs=72.1
Q ss_pred CCCCCcEEEEcCcccHHHHHHHHHCCCceEEEEECChHHHHHHHHhcCccccccCCCCcEEEEEcccccc-ccCCCeeEE
Q 035593 75 ILPPGPIGILGFGAGSAARLILDLYPEAVIHGWELDPSVIKVAREFFALEKLEKSYPDRLFVYVGNALKA-SLKDGFSGI 153 (269)
Q Consensus 75 l~~~~~VL~iG~G~G~~~~~l~~~~p~~~v~~vEidp~~~~~a~~~~~~~~~~~~~~~rv~~~~~D~~~~-~~~~~yD~I 153 (269)
..+..+|||||||.|.++..+.+. +.+++++|+++.+++. .. +.....+.... ...++||+|
T Consensus 20 ~~~~~~vLDiGcG~G~~~~~l~~~--~~~~~g~D~~~~~~~~--~~-------------~~~~~~~~~~~~~~~~~fD~i 82 (161)
T PF13489_consen 20 LKPGKRVLDIGCGTGSFLRALAKR--GFEVTGVDISPQMIEK--RN-------------VVFDNFDAQDPPFPDGSFDLI 82 (161)
T ss_dssp TTTTSEEEEESSTTSHHHHHHHHT--TSEEEEEESSHHHHHH--TT-------------SEEEEEECHTHHCHSSSEEEE
T ss_pred cCCCCEEEEEcCCCCHHHHHHHHh--CCEEEEEECCHHHHhh--hh-------------hhhhhhhhhhhhccccchhhH
Confidence 567899999999999999999763 4599999999999988 11 11111222233 567899999
Q ss_pred EEcCCCCCCCCCCC-CcHHHHHHHHhhccCCcEEEEEecCC
Q 035593 154 LVDLFSKGSLLSEL-EDPNTWEKLRQCLRKGGRIMVNVGGS 193 (269)
Q Consensus 154 ~~d~~~~~~~~~~l-~~~e~~~~~~~~L~pgG~l~~~~~~~ 193 (269)
++... ..++ ...++++.+++.|||||.+++.....
T Consensus 83 ~~~~~-----l~~~~d~~~~l~~l~~~LkpgG~l~~~~~~~ 118 (161)
T PF13489_consen 83 ICNDV-----LEHLPDPEEFLKELSRLLKPGGYLVISDPNR 118 (161)
T ss_dssp EEESS-----GGGSSHHHHHHHHHHHCEEEEEEEEEEEEBT
T ss_pred hhHHH-----HhhcccHHHHHHHHHHhcCCCCEEEEEEcCC
Confidence 97522 1222 24699999999999999999988654
No 135
>PLN02336 phosphoethanolamine N-methyltransferase
Probab=99.08 E-value=9.5e-10 Score=103.94 Aligned_cols=100 Identities=16% Similarity=0.127 Sum_probs=78.9
Q ss_pred CCCcEEEEcCcccHHHHHHHHHCCCceEEEEECChHHHHHHHHhcCccccccCCCCcEEEEEcccccc---ccCCCeeEE
Q 035593 77 PPGPIGILGFGAGSAARLILDLYPEAVIHGWELDPSVIKVAREFFALEKLEKSYPDRLFVYVGNALKA---SLKDGFSGI 153 (269)
Q Consensus 77 ~~~~VL~iG~G~G~~~~~l~~~~p~~~v~~vEidp~~~~~a~~~~~~~~~~~~~~~rv~~~~~D~~~~---~~~~~yD~I 153 (269)
+..+|||||||+|.++..+++. ..+|+++|+++++++.+++..+. .++++++++|+... ...++||+|
T Consensus 37 ~~~~vLDlGcG~G~~~~~la~~--~~~v~giD~s~~~l~~a~~~~~~-------~~~i~~~~~d~~~~~~~~~~~~fD~I 107 (475)
T PLN02336 37 EGKSVLELGAGIGRFTGELAKK--AGQVIALDFIESVIKKNESINGH-------YKNVKFMCADVTSPDLNISDGSVDLI 107 (475)
T ss_pred CCCEEEEeCCCcCHHHHHHHhh--CCEEEEEeCCHHHHHHHHHHhcc-------CCceEEEEecccccccCCCCCCEEEE
Confidence 4679999999999999999985 45899999999999988765332 25799999999743 345789999
Q ss_pred EEcCCCCCCCCCCCC---cHHHHHHHHhhccCCcEEEEEe
Q 035593 154 LVDLFSKGSLLSELE---DPNTWEKLRQCLRKGGRIMVNV 190 (269)
Q Consensus 154 ~~d~~~~~~~~~~l~---~~e~~~~~~~~L~pgG~l~~~~ 190 (269)
++...-. ++. ..++++++++.|+|||++++.-
T Consensus 108 ~~~~~l~-----~l~~~~~~~~l~~~~r~Lk~gG~l~~~d 142 (475)
T PLN02336 108 FSNWLLM-----YLSDKEVENLAERMVKWLKVGGYIFFRE 142 (475)
T ss_pred ehhhhHH-----hCCHHHHHHHHHHHHHhcCCCeEEEEEe
Confidence 9754211 222 2589999999999999998853
No 136
>COG1092 Predicted SAM-dependent methyltransferases [General function prediction only]
Probab=99.07 E-value=1.6e-09 Score=98.87 Aligned_cols=113 Identities=19% Similarity=0.073 Sum_probs=89.9
Q ss_pred CCCcEEEEcCcccHHHHHHHHHCCCc-eEEEEECChHHHHHHHHhcCccccccCCCCcEEEEEcccccc-----ccCCCe
Q 035593 77 PPGPIGILGFGAGSAARLILDLYPEA-VIHGWELDPSVIKVAREFFALEKLEKSYPDRLFVYVGNALKA-----SLKDGF 150 (269)
Q Consensus 77 ~~~~VL~iG~G~G~~~~~l~~~~p~~-~v~~vEidp~~~~~a~~~~~~~~~~~~~~~rv~~~~~D~~~~-----~~~~~y 150 (269)
..++||++=|=||..+.+++. .++ +||.||+|...++.|++++.++.. ...++.++++|++++ ..+.+|
T Consensus 217 ~GkrvLNlFsYTGgfSv~Aa~--gGA~~vt~VD~S~~al~~a~~N~~LNg~---~~~~~~~i~~Dvf~~l~~~~~~g~~f 291 (393)
T COG1092 217 AGKRVLNLFSYTGGFSVHAAL--GGASEVTSVDLSKRALEWARENAELNGL---DGDRHRFIVGDVFKWLRKAERRGEKF 291 (393)
T ss_pred cCCeEEEecccCcHHHHHHHh--cCCCceEEEeccHHHHHHHHHHHHhcCC---CccceeeehhhHHHHHHHHHhcCCcc
Confidence 388999999999999999887 466 999999999999999999987753 256899999999998 345699
Q ss_pred eEEEEcCCCCCCCCCCCCc-----HHHHHHHHhhccCCcEEEEEecCCC
Q 035593 151 SGILVDLFSKGSLLSELED-----PNTWEKLRQCLRKGGRIMVNVGGSC 194 (269)
Q Consensus 151 D~I~~d~~~~~~~~~~l~~-----~e~~~~~~~~L~pgG~l~~~~~~~~ 194 (269)
|+|++|+++-......... .+....+.+.|+|||++++...+..
T Consensus 292 DlIilDPPsF~r~k~~~~~~~rdy~~l~~~~~~iL~pgG~l~~~s~~~~ 340 (393)
T COG1092 292 DLIILDPPSFARSKKQEFSAQRDYKDLNDLALRLLAPGGTLVTSSCSRH 340 (393)
T ss_pred cEEEECCcccccCcccchhHHHHHHHHHHHHHHHcCCCCEEEEEecCCc
Confidence 9999997654222222211 3677788899999999988665553
No 137
>PLN02672 methionine S-methyltransferase
Probab=99.07 E-value=2.1e-09 Score=108.64 Aligned_cols=116 Identities=21% Similarity=0.275 Sum_probs=85.1
Q ss_pred CCcEEEEcCcccHHHHHHHHHCCCceEEEEECChHHHHHHHHhcCccccc-----------cCCCCcEEEEEccccccc-
Q 035593 78 PGPIGILGFGAGSAARLILDLYPEAVIHGWELDPSVIKVAREFFALEKLE-----------KSYPDRLFVYVGNALKAS- 145 (269)
Q Consensus 78 ~~~VL~iG~G~G~~~~~l~~~~p~~~v~~vEidp~~~~~a~~~~~~~~~~-----------~~~~~rv~~~~~D~~~~~- 145 (269)
+.+|||||||+|.++..+++.+|..+|+++|+||++++.|+++...+... .....|++++++|..+..
T Consensus 119 ~~~VLDlG~GSG~Iai~La~~~~~~~v~avDis~~Al~~A~~Na~~n~l~~~~~~~~~~~~~~l~~rV~f~~sDl~~~~~ 198 (1082)
T PLN02672 119 DKTVAELGCGNGWISIAIAEKWLPSKVYGLDINPRAVKVAWINLYLNALDDDGLPVYDGEGKTLLDRVEFYESDLLGYCR 198 (1082)
T ss_pred CCEEEEEecchHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCcccccccccccccccccccEEEEECchhhhcc
Confidence 46899999999999999999888889999999999999999987543210 001247999999998763
Q ss_pred c-CCCeeEEEEcCCCCC-----CC--------C--------C--CCCc-----------HHHHHHHHhhccCCcEEEEEe
Q 035593 146 L-KDGFSGILVDLFSKG-----SL--------L--------S--ELED-----------PNTWEKLRQCLRKGGRIMVNV 190 (269)
Q Consensus 146 ~-~~~yD~I~~d~~~~~-----~~--------~--------~--~l~~-----------~e~~~~~~~~L~pgG~l~~~~ 190 (269)
. ..+||+|+++.+--. .+ | + .+.. +.++..+.+.|+|||.+++++
T Consensus 199 ~~~~~fDlIVSNPPYI~~~e~~~l~~eV~~~ep~~~~~~~~p~~AL~g~~~g~dGL~~yr~i~~~a~~~L~pgG~l~lEi 278 (1082)
T PLN02672 199 DNNIELDRIVGCIPQILNPNPEAMSKLVTENASEEFLYSLSNYCALQGFVEDQFGLGLIARAVEEGISVIKPMGIMIFNM 278 (1082)
T ss_pred ccCCceEEEEECCCcCCCcchhhcChhhhhccccccccccCccccccCCCCCCcHHHHHHHHHHHHHHhccCCCEEEEEE
Confidence 2 247999998753110 00 0 0 1111 456667778999999999999
Q ss_pred cCC
Q 035593 191 GGS 193 (269)
Q Consensus 191 ~~~ 193 (269)
...
T Consensus 279 G~~ 281 (1082)
T PLN02672 279 GGR 281 (1082)
T ss_pred Ccc
Confidence 654
No 138
>TIGR02021 BchM-ChlM magnesium protoporphyrin O-methyltransferase. This model represents the S-adenosylmethionine-dependent O-methyltransferase responsible for methylation of magnesium protoporphyrin IX. This step is essentiasl for the biosynthesis of both chlorophyll and bacteriochlorophyll. This model encompasses two closely related clades, from cyanobacteria (and plants) where it is called ChlM and other photosynthetic bacteria where it is known as BchM.
Probab=99.06 E-value=9.9e-10 Score=93.30 Aligned_cols=103 Identities=11% Similarity=0.089 Sum_probs=76.3
Q ss_pred CCCCCcEEEEcCcccHHHHHHHHHCCCceEEEEECChHHHHHHHHhcCccccccCCCCcEEEEEccccccccCCCeeEEE
Q 035593 75 ILPPGPIGILGFGAGSAARLILDLYPEAVIHGWELDPSVIKVAREFFALEKLEKSYPDRLFVYVGNALKASLKDGFSGIL 154 (269)
Q Consensus 75 l~~~~~VL~iG~G~G~~~~~l~~~~p~~~v~~vEidp~~~~~a~~~~~~~~~~~~~~~rv~~~~~D~~~~~~~~~yD~I~ 154 (269)
..+..+|||||||+|.++..+++. +.+|+++|+++++++.|++++.... ...+++++++|+.... ++||+|+
T Consensus 53 ~~~~~~vLDiGcG~G~~~~~la~~--~~~v~gvD~s~~~i~~a~~~~~~~~----~~~~i~~~~~d~~~~~--~~fD~ii 124 (219)
T TIGR02021 53 PLKGKRVLDAGCGTGLLSIELAKR--GAIVKAVDISEQMVQMARNRAQGRD----VAGNVEFEVNDLLSLC--GEFDIVV 124 (219)
T ss_pred CCCCCEEEEEeCCCCHHHHHHHHC--CCEEEEEECCHHHHHHHHHHHHhcC----CCCceEEEECChhhCC--CCcCEEE
Confidence 346789999999999999999873 6699999999999999999874321 1247999999987654 7899998
Q ss_pred Ec-CCCCCCCCCCCCcHHHHHHHHhhccCCcEEEE
Q 035593 155 VD-LFSKGSLLSELEDPNTWEKLRQCLRKGGRIMV 188 (269)
Q Consensus 155 ~d-~~~~~~~~~~l~~~e~~~~~~~~L~pgG~l~~ 188 (269)
+- .... .+. -....+++++.+.+++++++.+
T Consensus 125 ~~~~l~~--~~~-~~~~~~l~~i~~~~~~~~~i~~ 156 (219)
T TIGR02021 125 CMDVLIH--YPA-SDMAKALGHLASLTKERVIFTF 156 (219)
T ss_pred EhhHHHh--CCH-HHHHHHHHHHHHHhCCCEEEEE
Confidence 62 2111 111 1124678889888887666654
No 139
>PRK05134 bifunctional 3-demethylubiquinone-9 3-methyltransferase/ 2-octaprenyl-6-hydroxy phenol methylase; Provisional
Probab=99.06 E-value=2e-09 Score=92.18 Aligned_cols=105 Identities=14% Similarity=0.087 Sum_probs=81.3
Q ss_pred CCCCcEEEEcCcccHHHHHHHHHCCCceEEEEECChHHHHHHHHhcCccccccCCCCcEEEEEcccccc--ccCCCeeEE
Q 035593 76 LPPGPIGILGFGAGSAARLILDLYPEAVIHGWELDPSVIKVAREFFALEKLEKSYPDRLFVYVGNALKA--SLKDGFSGI 153 (269)
Q Consensus 76 ~~~~~VL~iG~G~G~~~~~l~~~~p~~~v~~vEidp~~~~~a~~~~~~~~~~~~~~~rv~~~~~D~~~~--~~~~~yD~I 153 (269)
.+..+|||||||+|.++..+.+. +.+++++|+++.+++.|++++... ..+++++..|+.++ ...++||+|
T Consensus 47 ~~~~~vLdiG~G~G~~~~~l~~~--~~~v~~iD~s~~~~~~a~~~~~~~------~~~~~~~~~~~~~~~~~~~~~fD~I 118 (233)
T PRK05134 47 LFGKRVLDVGCGGGILSESMARL--GADVTGIDASEENIEVARLHALES------GLKIDYRQTTAEELAAEHPGQFDVV 118 (233)
T ss_pred CCCCeEEEeCCCCCHHHHHHHHc--CCeEEEEcCCHHHHHHHHHHHHHc------CCceEEEecCHHHhhhhcCCCccEE
Confidence 46789999999999999988873 678999999999999999886432 23578888888776 345789999
Q ss_pred EEcCCCCCCCCCCCCcHHHHHHHHhhccCCcEEEEEecC
Q 035593 154 LVDLFSKGSLLSELEDPNTWEKLRQCLRKGGRIMVNVGG 192 (269)
Q Consensus 154 ~~d~~~~~~~~~~l~~~e~~~~~~~~L~pgG~l~~~~~~ 192 (269)
++...-. .. -...++++.+.+.|+|||.+++..+.
T Consensus 119 i~~~~l~-~~---~~~~~~l~~~~~~L~~gG~l~v~~~~ 153 (233)
T PRK05134 119 TCMEMLE-HV---PDPASFVRACAKLVKPGGLVFFSTLN 153 (233)
T ss_pred EEhhHhh-cc---CCHHHHHHHHHHHcCCCcEEEEEecC
Confidence 8742111 11 12468899999999999999987654
No 140
>TIGR01983 UbiG ubiquinone biosynthesis O-methyltransferase. This model represents an O-methyltransferase believed to act at two points in the ubiquinone biosynthetic pathway in bacteria (UbiG) and fungi (COQ3). A separate methylase (MenG/UbiE) catalyzes the single C-methylation step. The most commonly used names for genes in this family do not indicate whether this gene is an O-methyl, or C-methyl transferase.
Probab=99.01 E-value=2.8e-09 Score=90.53 Aligned_cols=105 Identities=13% Similarity=0.065 Sum_probs=80.5
Q ss_pred CCCcEEEEcCcccHHHHHHHHHCCCceEEEEECChHHHHHHHHhcCccccccCCCCcEEEEEcccccc--ccCCCeeEEE
Q 035593 77 PPGPIGILGFGAGSAARLILDLYPEAVIHGWELDPSVIKVAREFFALEKLEKSYPDRLFVYVGNALKA--SLKDGFSGIL 154 (269)
Q Consensus 77 ~~~~VL~iG~G~G~~~~~l~~~~p~~~v~~vEidp~~~~~a~~~~~~~~~~~~~~~rv~~~~~D~~~~--~~~~~yD~I~ 154 (269)
.+.+|||+|||+|.++..+++. +.+++++|+++.+++.+++++.... ..++++..+|+.++ ...++||+|+
T Consensus 45 ~~~~vLdlG~G~G~~~~~l~~~--~~~v~~iD~s~~~~~~a~~~~~~~~-----~~~~~~~~~d~~~~~~~~~~~~D~i~ 117 (224)
T TIGR01983 45 FGLRVLDVGCGGGLLSEPLARL--GANVTGIDASEENIEVAKLHAKKDP-----LLKIEYRCTSVEDLAEKGAKSFDVVT 117 (224)
T ss_pred CCCeEEEECCCCCHHHHHHHhc--CCeEEEEeCCHHHHHHHHHHHHHcC-----CCceEEEeCCHHHhhcCCCCCccEEE
Confidence 4789999999999999988873 4579999999999999998875321 12588899998877 2347899998
Q ss_pred EcCCCCCCCCCCCCcHHHHHHHHhhccCCcEEEEEecC
Q 035593 155 VDLFSKGSLLSELEDPNTWEKLRQCLRKGGRIMVNVGG 192 (269)
Q Consensus 155 ~d~~~~~~~~~~l~~~e~~~~~~~~L~pgG~l~~~~~~ 192 (269)
+...-. .. -....+++.+.+.|+|||.+++..+.
T Consensus 118 ~~~~l~-~~---~~~~~~l~~~~~~L~~gG~l~i~~~~ 151 (224)
T TIGR01983 118 CMEVLE-HV---PDPQAFIRACAQLLKPGGILFFSTIN 151 (224)
T ss_pred ehhHHH-hC---CCHHHHHHHHHHhcCCCcEEEEEecC
Confidence 742111 01 12468999999999999998887654
No 141
>COG3963 Phospholipid N-methyltransferase [Lipid metabolism]
Probab=99.01 E-value=5.5e-09 Score=83.31 Aligned_cols=116 Identities=17% Similarity=0.177 Sum_probs=90.3
Q ss_pred HHHHhcCCCCCCCCcEEEEcCcccHHHHHHHHHC-CCceEEEEECChHHHHHHHHhcCccccccCCCCcEEEEEcccccc
Q 035593 66 FDAFATLPPILPPGPIGILGFGAGSAARLILDLY-PEAVIHGWELDPSVIKVAREFFALEKLEKSYPDRLFVYVGNALKA 144 (269)
Q Consensus 66 ~~~~~~~~~l~~~~~VL~iG~G~G~~~~~l~~~~-p~~~v~~vEidp~~~~~a~~~~~~~~~~~~~~~rv~~~~~D~~~~ 144 (269)
.+.|+..-.......||++|.|+|.+++.++++. +...++++|.|++.+....+.+. .++++.||+.+.
T Consensus 37 A~~M~s~I~pesglpVlElGPGTGV~TkaIL~~gv~~~~L~~iE~~~dF~~~L~~~~p----------~~~ii~gda~~l 106 (194)
T COG3963 37 ARKMASVIDPESGLPVLELGPGTGVITKAILSRGVRPESLTAIEYSPDFVCHLNQLYP----------GVNIINGDAFDL 106 (194)
T ss_pred HHHHHhccCcccCCeeEEEcCCccHhHHHHHhcCCCccceEEEEeCHHHHHHHHHhCC----------CccccccchhhH
Confidence 4555544333457789999999999999999864 47799999999999999888763 467999999876
Q ss_pred ------ccCCCeeEEEEcCCCCCCCCCCCCcHHHHHHHHhhccCCcEEEEEecCC
Q 035593 145 ------SLKDGFSGILVDLFSKGSLLSELEDPNTWEKLRQCLRKGGRIMVNVGGS 193 (269)
Q Consensus 145 ------~~~~~yD~I~~d~~~~~~~~~~l~~~e~~~~~~~~L~pgG~l~~~~~~~ 193 (269)
.....||.|++.+.-- ..+.+ .+.+.++.+..+|..||.++.-.+++
T Consensus 107 ~~~l~e~~gq~~D~viS~lPll-~~P~~-~~iaile~~~~rl~~gg~lvqftYgp 159 (194)
T COG3963 107 RTTLGEHKGQFFDSVISGLPLL-NFPMH-RRIAILESLLYRLPAGGPLVQFTYGP 159 (194)
T ss_pred HHHHhhcCCCeeeeEEeccccc-cCcHH-HHHHHHHHHHHhcCCCCeEEEEEecC
Confidence 3567899999876432 22222 25799999999999999998877765
No 142
>PF05891 Methyltransf_PK: AdoMet dependent proline di-methyltransferase; InterPro: IPR008576 This family consists of several eukaryotic proteins of unknown function that are S-adenosyl-L-methionine-dependent methyltransferase-like.; GO: 0008168 methyltransferase activity; PDB: 1XTP_A 2EX4_B.
Probab=99.01 E-value=1.7e-09 Score=90.37 Aligned_cols=130 Identities=18% Similarity=0.170 Sum_probs=84.6
Q ss_pred CCCcEEEEcCcccHHHHHHHHHCCCceEEEEECChHHHHHHHHhcCccccccCCCCcEEEEEcccccccc-CCCeeEEEE
Q 035593 77 PPGPIGILGFGAGSAARLILDLYPEAVIHGWELDPSVIKVAREFFALEKLEKSYPDRLFVYVGNALKASL-KDGFSGILV 155 (269)
Q Consensus 77 ~~~~VL~iG~G~G~~~~~l~~~~p~~~v~~vEidp~~~~~a~~~~~~~~~~~~~~~rv~~~~~D~~~~~~-~~~yD~I~~ 155 (269)
...++||+|+|.|.++..++-.. --+|+.||..+..++.|+++++... ..-.++++.-..+|.+ ..+||+|++
T Consensus 55 ~~~~alDcGAGIGRVTk~lLl~~-f~~VDlVEp~~~Fl~~a~~~l~~~~-----~~v~~~~~~gLQ~f~P~~~~YDlIW~ 128 (218)
T PF05891_consen 55 KFNRALDCGAGIGRVTKGLLLPV-FDEVDLVEPVEKFLEQAKEYLGKDN-----PRVGEFYCVGLQDFTPEEGKYDLIWI 128 (218)
T ss_dssp --SEEEEET-TTTHHHHHTCCCC--SEEEEEES-HHHHHHHHHHTCCGG-----CCEEEEEES-GGG----TT-EEEEEE
T ss_pred CcceEEecccccchhHHHHHHHh-cCEeEEeccCHHHHHHHHHHhcccC-----CCcceEEecCHhhccCCCCcEeEEEe
Confidence 36799999999999999876522 3499999999999999999986421 2346677777777844 579999997
Q ss_pred cCCCCCCCCCCCCc---HHHHHHHHhhccCCcEEEE--EecCCCccccccccchhHHHHHHHHHHHHHhc
Q 035593 156 DLFSKGSLLSELED---PNTWEKLRQCLRKGGRIMV--NVGGSCVEAEDSRRDGKVVMEATLKAMHKVFG 220 (269)
Q Consensus 156 d~~~~~~~~~~l~~---~e~~~~~~~~L~pgG~l~~--~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~F~ 220 (269)
- +...||.. .+||++|++.|+|+|++++ |+..... ......+....+....+++.|.
T Consensus 129 Q-----W~lghLTD~dlv~fL~RCk~~L~~~G~IvvKEN~~~~~~---~~~D~~DsSvTRs~~~~~~lF~ 190 (218)
T PF05891_consen 129 Q-----WCLGHLTDEDLVAFLKRCKQALKPNGVIVVKENVSSSGF---DEFDEEDSSVTRSDEHFRELFK 190 (218)
T ss_dssp E-----S-GGGS-HHHHHHHHHHHHHHEEEEEEEEEEEEEESSSE---EEEETTTTEEEEEHHHHHHHHH
T ss_pred h-----HhhccCCHHHHHHHHHHHHHhCcCCcEEEEEecCCCCCC---cccCCccCeeecCHHHHHHHHH
Confidence 4 33445554 4899999999999999998 6654321 0111112234445566777774
No 143
>PRK03522 rumB 23S rRNA methyluridine methyltransferase; Reviewed
Probab=98.99 E-value=3.5e-09 Score=94.94 Aligned_cols=102 Identities=15% Similarity=0.086 Sum_probs=76.9
Q ss_pred CCCcEEEEcCcccHHHHHHHHHCCCceEEEEECChHHHHHHHHhcCccccccCCCCcEEEEEcccccc--ccCCCeeEEE
Q 035593 77 PPGPIGILGFGAGSAARLILDLYPEAVIHGWELDPSVIKVAREFFALEKLEKSYPDRLFVYVGNALKA--SLKDGFSGIL 154 (269)
Q Consensus 77 ~~~~VL~iG~G~G~~~~~l~~~~p~~~v~~vEidp~~~~~a~~~~~~~~~~~~~~~rv~~~~~D~~~~--~~~~~yD~I~ 154 (269)
++.+|||+|||+|.++..+++ ++.+|+++|+++.+++.|++++.... -.+++++.+|+.++ ...++||+|+
T Consensus 173 ~~~~VLDl~cG~G~~sl~la~--~~~~V~gvD~s~~av~~A~~n~~~~~-----l~~v~~~~~D~~~~~~~~~~~~D~Vv 245 (315)
T PRK03522 173 PPRSMWDLFCGVGGFGLHCAT--PGMQLTGIEISAEAIACAKQSAAELG-----LTNVQFQALDSTQFATAQGEVPDLVL 245 (315)
T ss_pred CCCEEEEccCCCCHHHHHHHh--cCCEEEEEeCCHHHHHHHHHHHHHcC-----CCceEEEEcCHHHHHHhcCCCCeEEE
Confidence 468999999999999999988 46799999999999999999875432 24799999999887 2345799999
Q ss_pred EcCCCCCCCCCCCCcHHHHHHHHhhccCCcEEEEEecC
Q 035593 155 VDLFSKGSLLSELEDPNTWEKLRQCLRKGGRIMVNVGG 192 (269)
Q Consensus 155 ~d~~~~~~~~~~l~~~e~~~~~~~~L~pgG~l~~~~~~ 192 (269)
+|.+... ...+..+.+ ..++|++++.+.+..
T Consensus 246 ~dPPr~G------~~~~~~~~l-~~~~~~~ivyvsc~p 276 (315)
T PRK03522 246 VNPPRRG------IGKELCDYL-SQMAPRFILYSSCNA 276 (315)
T ss_pred ECCCCCC------ccHHHHHHH-HHcCCCeEEEEECCc
Confidence 9854221 123444433 447888877776644
No 144
>PF05724 TPMT: Thiopurine S-methyltransferase (TPMT); InterPro: IPR008854 This family consists of thiopurine S-methyltransferase proteins from both eukaryotes and prokaryotes. Thiopurine S-methyltransferase (TPMT) is a cytosolic enzyme that catalyses S-methylation of aromatic and heterocyclic sulphydryl compounds, including anticancer and immunosuppressive thiopurines [].; GO: 0008119 thiopurine S-methyltransferase activity, 0008152 metabolic process, 0005737 cytoplasm; PDB: 1PJZ_A 2H11_A 2BZG_A 3LCC_A 3BGD_A 2GB4_A 3BGI_B.
Probab=98.99 E-value=5e-09 Score=88.98 Aligned_cols=139 Identities=22% Similarity=0.265 Sum_probs=89.1
Q ss_pred CCCCCcEEEEcCcccHHHHHHHHHCCCceEEEEECChHHHHHHHHhcCcccc-------ccCCCCcEEEEEccccccc--
Q 035593 75 ILPPGPIGILGFGAGSAARLILDLYPEAVIHGWELDPSVIKVAREFFALEKL-------EKSYPDRLFVYVGNALKAS-- 145 (269)
Q Consensus 75 l~~~~~VL~iG~G~G~~~~~l~~~~p~~~v~~vEidp~~~~~a~~~~~~~~~-------~~~~~~rv~~~~~D~~~~~-- 145 (269)
..++.+||+.|||.|.-..+|++ .+.+|++||+++..++.|.+..+..+. ......+++++++|.+++.
T Consensus 35 ~~~~~rvLvPgCG~g~D~~~La~--~G~~VvGvDls~~Ai~~~~~e~~~~~~~~~~~~~~~~~~~~i~~~~gDfF~l~~~ 112 (218)
T PF05724_consen 35 LKPGGRVLVPGCGKGYDMLWLAE--QGHDVVGVDLSPTAIEQAFEENNLEPTVTSVGGFKRYQAGRITIYCGDFFELPPE 112 (218)
T ss_dssp TSTSEEEEETTTTTSCHHHHHHH--TTEEEEEEES-HHHHHHHHHHCTTEEECTTCTTEEEETTSSEEEEES-TTTGGGS
T ss_pred CCCCCeEEEeCCCChHHHHHHHH--CCCeEEEEecCHHHHHHHHHHhccCCCcccccceeeecCCceEEEEcccccCChh
Confidence 44677999999999999999998 378999999999999998554332110 0123568999999999983
Q ss_pred cCCCeeEEEEcCCCCCCCCCCCCcHHHHHHHHhhccCCcEEEEEecCCCccccccccchhHHHHHHHHHHHHHhcCc
Q 035593 146 LKDGFSGILVDLFSKGSLLSELEDPNTWEKLRQCLRKGGRIMVNVGGSCVEAEDSRRDGKVVMEATLKAMHKVFGKK 222 (269)
Q Consensus 146 ~~~~yD~I~~d~~~~~~~~~~l~~~e~~~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~F~~~ 222 (269)
..++||+|+ |-..-..+++. ...++.+.+.+.|+|||.+++....... ....+.+ +.-....+++.|+..
T Consensus 113 ~~g~fD~iy-Dr~~l~Alpp~-~R~~Ya~~l~~ll~p~g~~lLi~l~~~~----~~~~GPP-f~v~~~ev~~l~~~~ 182 (218)
T PF05724_consen 113 DVGKFDLIY-DRTFLCALPPE-MRERYAQQLASLLKPGGRGLLITLEYPQ----GEMEGPP-FSVTEEEVRELFGPG 182 (218)
T ss_dssp CHHSEEEEE-ECSSTTTS-GG-GHHHHHHHHHHCEEEEEEEEEEEEES-C----SCSSSSS-----HHHHHHHHTTT
T ss_pred hcCCceEEE-EecccccCCHH-HHHHHHHHHHHHhCCCCcEEEEEEEcCC----cCCCCcC-CCCCHHHHHHHhcCC
Confidence 335899998 43222234433 3679999999999999983322221111 1111222 233456788888643
No 145
>PF00891 Methyltransf_2: O-methyltransferase; InterPro: IPR001077 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This domain includes a range of O-methyltransferases some of which utilise S-adenosyl methionine as substrate []. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. In eukaryotes, DNA methylation has been implicated in the control of several cellular processes, including differentiation, gene regulation, and embryonic development. O-methyltransferases have a common catalytic domain structure, which might be universal among S-adenosyl-L-methionine (AdoMet)-dependent methyltransferases []. Comparative analysis of the predicted amino acid sequences of a number of plant O-methyltransferase cDNA clones show that they share some 32-71% sequence identity, and can be grouped according to the different compounds they utilise as substrates [].; GO: 0008171 O-methyltransferase activity; PDB: 1FPQ_A 1FP1_D 3P9K_B 3P9I_D 3P9C_A 3I53_A 3I5U_A 3I64_A 3I58_A 1ZG3_A ....
Probab=98.98 E-value=2.2e-09 Score=92.54 Aligned_cols=102 Identities=21% Similarity=0.227 Sum_probs=77.3
Q ss_pred CCCCCCcEEEEcCcccHHHHHHHHHCCCceEEEEECChHHHHHHHHhcCccccccCCCCcEEEEEccccccccCCCeeEE
Q 035593 74 PILPPGPIGILGFGAGSAARLILDLYPEAVIHGWELDPSVIKVAREFFALEKLEKSYPDRLFVYVGNALKASLKDGFSGI 153 (269)
Q Consensus 74 ~l~~~~~VL~iG~G~G~~~~~l~~~~p~~~v~~vEidp~~~~~a~~~~~~~~~~~~~~~rv~~~~~D~~~~~~~~~yD~I 153 (269)
.+.+.++|+|||+|.|..+..+++++|+.+++++|+ |.+++.+++ . +|++++.+|.++- .+. +|+|
T Consensus 97 d~~~~~~vvDvGGG~G~~~~~l~~~~P~l~~~v~Dl-p~v~~~~~~----~-------~rv~~~~gd~f~~-~P~-~D~~ 162 (241)
T PF00891_consen 97 DFSGFKTVVDVGGGSGHFAIALARAYPNLRATVFDL-PEVIEQAKE----A-------DRVEFVPGDFFDP-LPV-ADVY 162 (241)
T ss_dssp TTTTSSEEEEET-TTSHHHHHHHHHSTTSEEEEEE--HHHHCCHHH----T-------TTEEEEES-TTTC-CSS-ESEE
T ss_pred cccCccEEEeccCcchHHHHHHHHHCCCCcceeecc-Hhhhhcccc----c-------cccccccccHHhh-hcc-ccce
Confidence 344567899999999999999999999999999999 999999988 1 5899999999833 233 9999
Q ss_pred EEcCCCCCCCCCCCCcHHHHHHHHhhccCC--cEEEEEec
Q 035593 154 LVDLFSKGSLLSELEDPNTWEKLRQCLRKG--GRIMVNVG 191 (269)
Q Consensus 154 ~~d~~~~~~~~~~l~~~e~~~~~~~~L~pg--G~l~~~~~ 191 (269)
++--.-+.. ++ -.....++++++.|+|| |.|++.-.
T Consensus 163 ~l~~vLh~~-~d-~~~~~iL~~~~~al~pg~~g~llI~e~ 200 (241)
T PF00891_consen 163 LLRHVLHDW-SD-EDCVKILRNAAAALKPGKDGRLLIIEM 200 (241)
T ss_dssp EEESSGGGS--H-HHHHHHHHHHHHHSEECTTEEEEEEEE
T ss_pred eeehhhhhc-ch-HHHHHHHHHHHHHhCCCCCCeEEEEee
Confidence 974322211 11 11358999999999999 98887543
No 146
>KOG1271 consensus Methyltransferases [General function prediction only]
Probab=98.98 E-value=5.7e-09 Score=84.38 Aligned_cols=112 Identities=13% Similarity=0.102 Sum_probs=78.7
Q ss_pred CCcEEEEcCcccHHHHHHHHHCCCceEEEEECChHHHHHHHHhcCccccccCCCCcEEEEEcccccc-ccCCCeeEEE--
Q 035593 78 PGPIGILGFGAGSAARLILDLYPEAVIHGWELDPSVIKVAREFFALEKLEKSYPDRLFVYVGNALKA-SLKDGFSGIL-- 154 (269)
Q Consensus 78 ~~~VL~iG~G~G~~~~~l~~~~p~~~v~~vEidp~~~~~a~~~~~~~~~~~~~~~rv~~~~~D~~~~-~~~~~yD~I~-- 154 (269)
..+|||+|||.|.+...|++.--....++||.++..+++|+....... .+..+++.+.|..+- ...++||+|+
T Consensus 68 A~~VlDLGtGNG~~L~~L~~egf~~~L~GvDYs~~AV~LA~niAe~~~----~~n~I~f~q~DI~~~~~~~~qfdlvlDK 143 (227)
T KOG1271|consen 68 ADRVLDLGTGNGHLLFQLAKEGFQSKLTGVDYSEKAVELAQNIAERDG----FSNEIRFQQLDITDPDFLSGQFDLVLDK 143 (227)
T ss_pred ccceeeccCCchHHHHHHHHhcCCCCccccccCHHHHHHHHHHHHhcC----CCcceeEEEeeccCCcccccceeEEeec
Confidence 349999999999999999985334469999999999999986653322 123599999998875 5566788876
Q ss_pred --EcCCCCCCCCCCCCcHHHHHHHHhhccCCcEEEEEecCC
Q 035593 155 --VDLFSKGSLLSELEDPNTWEKLRQCLRKGGRIMVNVGGS 193 (269)
Q Consensus 155 --~d~~~~~~~~~~l~~~e~~~~~~~~L~pgG~l~~~~~~~ 193 (269)
.|+.+-....+.--..-++..+.+.|+|||++++...+.
T Consensus 144 GT~DAisLs~d~~~~r~~~Y~d~v~~ll~~~gifvItSCN~ 184 (227)
T KOG1271|consen 144 GTLDAISLSPDGPVGRLVVYLDSVEKLLSPGGIFVITSCNF 184 (227)
T ss_pred CceeeeecCCCCcccceeeehhhHhhccCCCcEEEEEecCc
Confidence 222211100010011357788889999999999977665
No 147
>PRK13168 rumA 23S rRNA m(5)U1939 methyltransferase; Reviewed
Probab=98.97 E-value=5.2e-09 Score=98.12 Aligned_cols=102 Identities=21% Similarity=0.181 Sum_probs=78.7
Q ss_pred CCCCCcEEEEcCcccHHHHHHHHHCCCceEEEEECChHHHHHHHHhcCccccccCCCCcEEEEEcccccc-c----cCCC
Q 035593 75 ILPPGPIGILGFGAGSAARLILDLYPEAVIHGWELDPSVIKVAREFFALEKLEKSYPDRLFVYVGNALKA-S----LKDG 149 (269)
Q Consensus 75 l~~~~~VL~iG~G~G~~~~~l~~~~p~~~v~~vEidp~~~~~a~~~~~~~~~~~~~~~rv~~~~~D~~~~-~----~~~~ 149 (269)
+.+..+|||+|||+|.++..+++. ..+|+++|+|+++++.|++++.... -.+++++.+|+.+. . ..++
T Consensus 295 ~~~~~~VLDlgcGtG~~sl~la~~--~~~V~gvD~s~~al~~A~~n~~~~~-----~~~v~~~~~d~~~~l~~~~~~~~~ 367 (443)
T PRK13168 295 PQPGDRVLDLFCGLGNFTLPLARQ--AAEVVGVEGVEAMVERARENARRNG-----LDNVTFYHANLEEDFTDQPWALGG 367 (443)
T ss_pred CCCCCEEEEEeccCCHHHHHHHHh--CCEEEEEeCCHHHHHHHHHHHHHcC-----CCceEEEEeChHHhhhhhhhhcCC
Confidence 345689999999999999999885 3699999999999999999875432 24699999999765 1 2457
Q ss_pred eeEEEEcCCCCCCCCCCCCcHHHHHHHHhhccCCcEEEEEec
Q 035593 150 FSGILVDLFSKGSLLSELEDPNTWEKLRQCLRKGGRIMVNVG 191 (269)
Q Consensus 150 yD~I~~d~~~~~~~~~~l~~~e~~~~~~~~L~pgG~l~~~~~ 191 (269)
||+|++|.+-.. ..+.++.+.+ ++|++++.+.+.
T Consensus 368 fD~Vi~dPPr~g-------~~~~~~~l~~-~~~~~ivyvSCn 401 (443)
T PRK13168 368 FDKVLLDPPRAG-------AAEVMQALAK-LGPKRIVYVSCN 401 (443)
T ss_pred CCEEEECcCCcC-------hHHHHHHHHh-cCCCeEEEEEeC
Confidence 999999865331 2356655554 789998888774
No 148
>KOG1661 consensus Protein-L-isoaspartate(D-aspartate) O-methyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=98.96 E-value=2.6e-09 Score=88.16 Aligned_cols=118 Identities=19% Similarity=0.264 Sum_probs=89.3
Q ss_pred hHHHHH-hcCCCCCCCCcEEEEcCcccHHHHHHHHHC--CCceEEEEECChHHHHHHHHhcCccc-----cccCCCCcEE
Q 035593 64 TYFDAF-ATLPPILPPGPIGILGFGAGSAARLILDLY--PEAVIHGWELDPSVIKVAREFFALEK-----LEKSYPDRLF 135 (269)
Q Consensus 64 ~y~~~~-~~~~~l~~~~~VL~iG~G~G~~~~~l~~~~--p~~~v~~vEidp~~~~~a~~~~~~~~-----~~~~~~~rv~ 135 (269)
.|...| +..+.+.|..+.|++|.|+|.++..+.... ++....+||.-|++++.+++++...- ...+...++.
T Consensus 68 mha~~le~L~~~L~pG~s~LdvGsGSGYLt~~~~~mvg~~g~~~~GIEh~~eLVe~Sk~nl~k~i~~~e~~~~~~~~~l~ 147 (237)
T KOG1661|consen 68 MHATALEYLDDHLQPGASFLDVGSGSGYLTACFARMVGATGGNVHGIEHIPELVEYSKKNLDKDITTSESSSKLKRGELS 147 (237)
T ss_pred HHHHHHHHHHHhhccCcceeecCCCccHHHHHHHHHhcCCCccccchhhhHHHHHHHHHHHHhhccCchhhhhhccCceE
Confidence 344444 233457899999999999999998887643 34556999999999999998864211 0112467899
Q ss_pred EEEcccccc-ccCCCeeEEEEcCCCCCCCCCCCCcHHHHHHHHhhccCCcEEEEEec
Q 035593 136 VYVGNALKA-SLKDGFSGILVDLFSKGSLLSELEDPNTWEKLRQCLRKGGRIMVNVG 191 (269)
Q Consensus 136 ~~~~D~~~~-~~~~~yD~I~~d~~~~~~~~~~l~~~e~~~~~~~~L~pgG~l~~~~~ 191 (269)
++++|++.. ....+||.|.+.+..+ +.-+++...|++||.+++-..
T Consensus 148 ivvGDgr~g~~e~a~YDaIhvGAaa~----------~~pq~l~dqL~~gGrllip~~ 194 (237)
T KOG1661|consen 148 IVVGDGRKGYAEQAPYDAIHVGAAAS----------ELPQELLDQLKPGGRLLIPVG 194 (237)
T ss_pred EEeCCccccCCccCCcceEEEccCcc----------ccHHHHHHhhccCCeEEEeec
Confidence 999999997 7778999999975432 455777888999999988664
No 149
>PF07021 MetW: Methionine biosynthesis protein MetW; InterPro: IPR010743 This family consists of several bacterial and one archaeal methionine biosynthesis MetW proteins. Biosynthesis of methionine from homoserine in Pseudomonas putida takes place in three steps. The first step is the acylation of homoserine to yield an acyl-L-homoserine. This reaction is catalysed by the products of the metXW genes and is equivalent to the first step in enterobacteria, Gram-positive bacteria and fungi, except that in these microorganisms the reaction is catalysed by a single polypeptide (the product of the metA gene in Escherichia coli and the met5 gene product in Neurospora crassa). In P. putida, as in Gram-positive bacteria and certain fungi, the second and third steps are a direct sulphydrylation that converts the O-acyl-L-homoserine into homocysteine and further methylation to yield methionine. The latter reaction can be mediated by either of the two methionine synthetases present in the cells [].
Probab=98.96 E-value=2.8e-09 Score=87.55 Aligned_cols=98 Identities=19% Similarity=0.234 Sum_probs=73.2
Q ss_pred CCCCCcEEEEcCcccHHHHHHHHHCCCceEEEEECChHHHHHHHHhcCccccccCCCCcEEEEEcccccc---ccCCCee
Q 035593 75 ILPPGPIGILGFGAGSAARLILDLYPEAVIHGWELDPSVIKVAREFFALEKLEKSYPDRLFVYVGNALKA---SLKDGFS 151 (269)
Q Consensus 75 l~~~~~VL~iG~G~G~~~~~l~~~~p~~~v~~vEidp~~~~~a~~~~~~~~~~~~~~~rv~~~~~D~~~~---~~~~~yD 151 (269)
+.|..+|||||||.|.+..+|.+. .+++..+||+|++-+..|.++ .+.++++|+.+- .++++||
T Consensus 11 I~pgsrVLDLGCGdG~LL~~L~~~-k~v~g~GvEid~~~v~~cv~r------------Gv~Viq~Dld~gL~~f~d~sFD 77 (193)
T PF07021_consen 11 IEPGSRVLDLGCGDGELLAYLKDE-KQVDGYGVEIDPDNVAACVAR------------GVSVIQGDLDEGLADFPDQSFD 77 (193)
T ss_pred cCCCCEEEecCCCchHHHHHHHHh-cCCeEEEEecCHHHHHHHHHc------------CCCEEECCHHHhHhhCCCCCcc
Confidence 567899999999999999999885 689999999999998888765 378999999875 6788999
Q ss_pred EEEEcCCCCCCCCCCCCcHHHHHHHHhhccCCcEEEEEecC
Q 035593 152 GILVDLFSKGSLLSELEDPNTWEKLRQCLRKGGRIMVNVGG 192 (269)
Q Consensus 152 ~I~~d~~~~~~~~~~l~~~e~~~~~~~~L~pgG~l~~~~~~ 192 (269)
.||+.- .........+.++++.+. |...++.+.+
T Consensus 78 ~VIlsq----tLQ~~~~P~~vL~EmlRV---gr~~IVsFPN 111 (193)
T PF07021_consen 78 YVILSQ----TLQAVRRPDEVLEEMLRV---GRRAIVSFPN 111 (193)
T ss_pred EEehHh----HHHhHhHHHHHHHHHHHh---cCeEEEEecC
Confidence 999731 111112234666666544 5555555543
No 150
>KOG2899 consensus Predicted methyltransferase [General function prediction only]
Probab=98.95 E-value=6.4e-09 Score=87.61 Aligned_cols=112 Identities=20% Similarity=0.193 Sum_probs=76.0
Q ss_pred CCCcEEEEcCcccHHHHHHHHHCCCceEEEEECChHHHHHHHHhcCccccccC---------------------------
Q 035593 77 PPGPIGILGFGAGSAARLILDLYPEAVIHGWELDPSVIKVAREFFALEKLEKS--------------------------- 129 (269)
Q Consensus 77 ~~~~VL~iG~G~G~~~~~l~~~~p~~~v~~vEidp~~~~~a~~~~~~~~~~~~--------------------------- 129 (269)
.++.+|||||-+|.++..+++.+....|.+||||+..++.|+++...+.....
T Consensus 58 ~~~~~LDIGCNsG~lt~~iak~F~~r~iLGvDID~~LI~~Ark~~r~~~~~~~~~~~~~~~~~~~~~~~is~~~~a~~a~ 137 (288)
T KOG2899|consen 58 EPKQALDIGCNSGFLTLSIAKDFGPRRILGVDIDPVLIQRARKEIRFPCDHETEVSGKFPASFGVQFGPISQRNEADRAF 137 (288)
T ss_pred CcceeEeccCCcchhHHHHHHhhccceeeEeeccHHHHHHHHHhccccccccccccCCCccccccccccccccccccccc
Confidence 47899999999999999999999888999999999999999998754321000
Q ss_pred ----------CCCcEEEEEccccccccCCCeeEEEEcCCCCCCCCCC--CCcHHHHHHHHhhccCCcEEEEE
Q 035593 130 ----------YPDRLFVYVGNALKASLKDGFSGILVDLFSKGSLLSE--LEDPNTWEKLRQCLRKGGRIMVN 189 (269)
Q Consensus 130 ----------~~~rv~~~~~D~~~~~~~~~yD~I~~d~~~~~~~~~~--l~~~e~~~~~~~~L~pgG~l~~~ 189 (269)
...+..+-..|.. ......||+|++-.-..+....+ --...||+++.+.|.|||+|++.
T Consensus 138 t~~~p~n~~f~~~n~vle~~dfl-~~~~~~fDiIlcLSiTkWIHLNwgD~GL~~ff~kis~ll~pgGiLvvE 208 (288)
T KOG2899|consen 138 TTDFPDNVWFQKENYVLESDDFL-DMIQPEFDIILCLSITKWIHLNWGDDGLRRFFRKISSLLHPGGILVVE 208 (288)
T ss_pred cccCCcchhcccccEEEecchhh-hhccccccEEEEEEeeeeEecccccHHHHHHHHHHHHhhCcCcEEEEc
Confidence 0001111111111 12456899998643322211111 11368999999999999999984
No 151
>KOG1663 consensus O-methyltransferase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=98.94 E-value=4.4e-09 Score=88.15 Aligned_cols=104 Identities=24% Similarity=0.301 Sum_probs=87.1
Q ss_pred CCCCCcEEEEcCcccHHHHHHHHHCC-CceEEEEECChHHHHHHHHhcCccccccCCCCcEEEEEcccccc-------cc
Q 035593 75 ILPPGPIGILGFGAGSAARLILDLYP-EAVIHGWELDPSVIKVAREFFALEKLEKSYPDRLFVYVGNALKA-------SL 146 (269)
Q Consensus 75 l~~~~~VL~iG~G~G~~~~~l~~~~p-~~~v~~vEidp~~~~~a~~~~~~~~~~~~~~~rv~~~~~D~~~~-------~~ 146 (269)
+..++++|+||.=+|..+..++...| +.+|+++|+|++..+++.+...... ...+++++++++.+. ..
T Consensus 71 ~~~ak~~lelGvfTGySaL~~Alalp~dGrv~a~eid~~~~~~~~~~~k~ag----v~~KI~~i~g~a~esLd~l~~~~~ 146 (237)
T KOG1663|consen 71 LLNAKRTLELGVFTGYSALAVALALPEDGRVVAIEIDADAYEIGLELVKLAG----VDHKITFIEGPALESLDELLADGE 146 (237)
T ss_pred HhCCceEEEEecccCHHHHHHHHhcCCCceEEEEecChHHHHHhHHHHHhcc----ccceeeeeecchhhhHHHHHhcCC
Confidence 34689999999999999998888888 6899999999999999987654333 357899999999875 24
Q ss_pred CCCeeEEEEcCCCCCCCCCCCCcHHHHHHHHhhccCCcEEEEE
Q 035593 147 KDGFSGILVDLFSKGSLLSELEDPNTWEKLRQCLRKGGRIMVN 189 (269)
Q Consensus 147 ~~~yD~I~~d~~~~~~~~~~l~~~e~~~~~~~~L~pgG~l~~~ 189 (269)
.+.||.+|+|+.... -..+++++.+.|++||+++++
T Consensus 147 ~~tfDfaFvDadK~n-------Y~~y~e~~l~Llr~GGvi~~D 182 (237)
T KOG1663|consen 147 SGTFDFAFVDADKDN-------YSNYYERLLRLLRVGGVIVVD 182 (237)
T ss_pred CCceeEEEEccchHH-------HHHHHHHHHhhcccccEEEEe
Confidence 678999999987543 238999999999999999985
No 152
>PF05185 PRMT5: PRMT5 arginine-N-methyltransferase; InterPro: IPR007857 The human homologue of Saccharomyces cerevisiae Skb1 (Shk1 kinase-binding protein 1) is a protein methyltransferase []. These proteins seem to play a role in Jak signalling.; GO: 0008168 methyltransferase activity, 0005737 cytoplasm; PDB: 2Y1W_C 2Y1X_D 2V7E_B 2V74_H 3R0Q_G 3B3F_B 3B3J_A 3B3G_A 3UA3_A 3UA4_B ....
Probab=98.94 E-value=3e-09 Score=99.34 Aligned_cols=104 Identities=14% Similarity=0.199 Sum_probs=75.3
Q ss_pred CCcEEEEcCcccHHHHHHHHHC----CCceEEEEECChHHHHHHHHhcCccccccCCCCcEEEEEccccccccCCCeeEE
Q 035593 78 PGPIGILGFGAGSAARLILDLY----PEAVIHGWELDPSVIKVAREFFALEKLEKSYPDRLFVYVGNALKASLKDGFSGI 153 (269)
Q Consensus 78 ~~~VL~iG~G~G~~~~~l~~~~----p~~~v~~vEidp~~~~~a~~~~~~~~~~~~~~~rv~~~~~D~~~~~~~~~yD~I 153 (269)
.+.||+||||+|.+....++.. ...+|++||.||..+...++....+.| +.+|+++.+|++++..+++.|+|
T Consensus 187 ~~vVldVGAGrGpL~~~al~A~~~~~~a~~VyAVEkn~~A~~~l~~~v~~n~w----~~~V~vi~~d~r~v~lpekvDII 262 (448)
T PF05185_consen 187 DKVVLDVGAGRGPLSMFALQAGARAGGAVKVYAVEKNPNAVVTLQKRVNANGW----GDKVTVIHGDMREVELPEKVDII 262 (448)
T ss_dssp T-EEEEES-TTSHHHHHHHHTTHHHCCESEEEEEESSTHHHHHHHHHHHHTTT----TTTEEEEES-TTTSCHSS-EEEE
T ss_pred ceEEEEeCCCccHHHHHHHHHHHHhCCCeEEEEEcCCHhHHHHHHHHHHhcCC----CCeEEEEeCcccCCCCCCceeEE
Confidence 4679999999999998777642 246999999999887766554333333 36899999999999888899999
Q ss_pred EEcCCCCCCCCCCCCcHHHHHHHHhhccCCcEEE
Q 035593 154 LVDLFSKGSLLSELEDPNTWEKLRQCLRKGGRIM 187 (269)
Q Consensus 154 ~~d~~~~~~~~~~l~~~e~~~~~~~~L~pgG~l~ 187 (269)
++..... ...+-...|.+....+.|||+|+++
T Consensus 263 VSElLGs--fg~nEl~pE~Lda~~rfLkp~Gi~I 294 (448)
T PF05185_consen 263 VSELLGS--FGDNELSPECLDAADRFLKPDGIMI 294 (448)
T ss_dssp EE---BT--TBTTTSHHHHHHHGGGGEEEEEEEE
T ss_pred EEeccCC--ccccccCHHHHHHHHhhcCCCCEEe
Confidence 9877643 2222245788999999999999886
No 153
>PRK13256 thiopurine S-methyltransferase; Reviewed
Probab=98.93 E-value=1.8e-08 Score=85.74 Aligned_cols=111 Identities=14% Similarity=0.031 Sum_probs=82.2
Q ss_pred CCCcEEEEcCcccHHHHHHHHHCCCceEEEEECChHHHHHHHHhcCccc-------cccCCCCcEEEEEcccccccc---
Q 035593 77 PPGPIGILGFGAGSAARLILDLYPEAVIHGWELDPSVIKVAREFFALEK-------LEKSYPDRLFVYVGNALKASL--- 146 (269)
Q Consensus 77 ~~~~VL~iG~G~G~~~~~l~~~~p~~~v~~vEidp~~~~~a~~~~~~~~-------~~~~~~~rv~~~~~D~~~~~~--- 146 (269)
++.+||+.|||.|.-+.+|++ -+.+|++||+++..++.+.+..++.. .......+++++++|.+++..
T Consensus 43 ~~~rvLvPgCGkg~D~~~LA~--~G~~V~GvDlS~~Ai~~~~~e~~~~~~~~~~~~~~~~~~~~i~~~~gD~f~l~~~~~ 120 (226)
T PRK13256 43 DSSVCLIPMCGCSIDMLFFLS--KGVKVIGIELSEKAVLSFFSQNTINYEVIHGNDYKLYKGDDIEIYVADIFNLPKIAN 120 (226)
T ss_pred CCCeEEEeCCCChHHHHHHHh--CCCcEEEEecCHHHHHHHHHHcCCCcceecccccceeccCceEEEEccCcCCCcccc
Confidence 468999999999999999998 47899999999999999877443211 001124579999999999832
Q ss_pred -CCCeeEEEEcCCCCCCCCCCCCcHHHHHHHHhhccCCcEEEEEec
Q 035593 147 -KDGFSGILVDLFSKGSLLSELEDPNTWEKLRQCLRKGGRIMVNVG 191 (269)
Q Consensus 147 -~~~yD~I~~d~~~~~~~~~~l~~~e~~~~~~~~L~pgG~l~~~~~ 191 (269)
.++||+|+--++- ...++.+ ...+.+.+.+.|+|||.+++-..
T Consensus 121 ~~~~fD~VyDra~~-~Alpp~~-R~~Y~~~l~~lL~pgg~llll~~ 164 (226)
T PRK13256 121 NLPVFDIWYDRGAY-IALPNDL-RTNYAKMMLEVCSNNTQILLLVM 164 (226)
T ss_pred ccCCcCeeeeehhH-hcCCHHH-HHHHHHHHHHHhCCCcEEEEEEE
Confidence 3589998732221 1233332 56899999999999998776554
No 154
>PF02475 Met_10: Met-10+ like-protein; InterPro: IPR003402 This entry represents the Trm5 family. Trm5 specifically methylates the N1 position of guanosine-37 in various tRNAs [, , ]. Another members of this family, tRNA wybutosine-synthesizing protein 2 (Tyw2) and its homologues, are S-adenosyl-L-methionine-dependent transferases that act as a component of the wybutosine biosynthesis pathway [, ]. tRNA wybutosine-synthesizing protein 2 was originally thought to be a methyltransferase [].; GO: 0016740 transferase activity; PDB: 3A27_A 2ZZN_B 2YX1_A 2ZZM_A 3AY0_B 3K6R_A 3A26_A 3A25_A.
Probab=98.92 E-value=4e-09 Score=88.19 Aligned_cols=101 Identities=19% Similarity=0.229 Sum_probs=77.7
Q ss_pred CCCCCcEEEEcCcccHHHHHHHHHCCCceEEEEECChHHHHHHHHhcCccccccCCCCcEEEEEccccccccCCCeeEEE
Q 035593 75 ILPPGPIGILGFGAGSAARLILDLYPEAVIHGWELDPSVIKVAREFFALEKLEKSYPDRLFVYVGNALKASLKDGFSGIL 154 (269)
Q Consensus 75 l~~~~~VL~iG~G~G~~~~~l~~~~p~~~v~~vEidp~~~~~a~~~~~~~~~~~~~~~rv~~~~~D~~~~~~~~~yD~I~ 154 (269)
+.+...|||+-||-|.++..++++.+..+|.++|+||..++..+++..++.+ ..++.++.+|++++.....+|.|+
T Consensus 99 v~~~e~VlD~faGIG~f~l~~ak~~~~~~V~A~d~Np~a~~~L~~Ni~lNkv----~~~i~~~~~D~~~~~~~~~~drvi 174 (200)
T PF02475_consen 99 VKPGEVVLDMFAGIGPFSLPIAKHGKAKRVYAVDLNPDAVEYLKENIRLNKV----ENRIEVINGDAREFLPEGKFDRVI 174 (200)
T ss_dssp --TT-EEEETT-TTTTTHHHHHHHT-SSEEEEEES-HHHHHHHHHHHHHTT-----TTTEEEEES-GGG---TT-EEEEE
T ss_pred CCcceEEEEccCCccHHHHHHhhhcCccEEEEecCCHHHHHHHHHHHHHcCC----CCeEEEEcCCHHHhcCccccCEEE
Confidence 6689999999999999999999876788999999999999999999876653 468999999999995588999999
Q ss_pred EcCCCCCCCCCCCCcHHHHHHHHhhccCCcEEE
Q 035593 155 VDLFSKGSLLSELEDPNTWEKLRQCLRKGGRIM 187 (269)
Q Consensus 155 ~d~~~~~~~~~~l~~~e~~~~~~~~L~pgG~l~ 187 (269)
++.+.. +.+|+..+.+.+++||++.
T Consensus 175 m~lp~~--------~~~fl~~~~~~~~~~g~ih 199 (200)
T PF02475_consen 175 MNLPES--------SLEFLDAALSLLKEGGIIH 199 (200)
T ss_dssp E--TSS--------GGGGHHHHHHHEEEEEEEE
T ss_pred ECChHH--------HHHHHHHHHHHhcCCcEEE
Confidence 976543 4689999999999999875
No 155
>PRK04338 N(2),N(2)-dimethylguanosine tRNA methyltransferase; Provisional
Probab=98.92 E-value=6.3e-09 Score=95.42 Aligned_cols=100 Identities=11% Similarity=0.090 Sum_probs=82.3
Q ss_pred CCcEEEEcCcccHHHHHHHHHCCCceEEEEECChHHHHHHHHhcCccccccCCCCcEEEEEcccccccc-CCCeeEEEEc
Q 035593 78 PGPIGILGFGAGSAARLILDLYPEAVIHGWELDPSVIKVAREFFALEKLEKSYPDRLFVYVGNALKASL-KDGFSGILVD 156 (269)
Q Consensus 78 ~~~VL~iG~G~G~~~~~l~~~~p~~~v~~vEidp~~~~~a~~~~~~~~~~~~~~~rv~~~~~D~~~~~~-~~~yD~I~~d 156 (269)
..+|||++||+|..+..++...+..+|+++|+||..++.+++++..+. -.+++++.+|+..+.. .++||+|++|
T Consensus 58 ~~~vLDl~aGsG~~~l~~a~~~~~~~V~a~Din~~Av~~a~~N~~~N~-----~~~~~v~~~Da~~~l~~~~~fD~V~lD 132 (382)
T PRK04338 58 RESVLDALSASGIRGIRYALETGVEKVTLNDINPDAVELIKKNLELNG-----LENEKVFNKDANALLHEERKFDVVDID 132 (382)
T ss_pred CCEEEECCCcccHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhC-----CCceEEEhhhHHHHHhhcCCCCEEEEC
Confidence 358999999999999999876655699999999999999999986553 2357799999987622 5679999999
Q ss_pred CCCCCCCCCCCCcHHHHHHHHhhccCCcEEEEEe
Q 035593 157 LFSKGSLLSELEDPNTWEKLRQCLRKGGRIMVNV 190 (269)
Q Consensus 157 ~~~~~~~~~~l~~~e~~~~~~~~L~pgG~l~~~~ 190 (269)
.+.. ..+|+..+.+.++++|++.+..
T Consensus 133 P~Gs--------~~~~l~~al~~~~~~gilyvSA 158 (382)
T PRK04338 133 PFGS--------PAPFLDSAIRSVKRGGLLCVTA 158 (382)
T ss_pred CCCC--------cHHHHHHHHHHhcCCCEEEEEe
Confidence 8632 3578899888899999998874
No 156
>TIGR00095 RNA methyltransferase, RsmD family. This model represents a family of uncharacterized bacterial proteins. Members are present in nearly every complete bacterial genome, always in a single copy. PSI-BLAST analysis shows homology to several families of SAM-dependent methyltransferases, including ribosomal RNA adenine dimethylases.
Probab=98.91 E-value=1.3e-08 Score=84.67 Aligned_cols=106 Identities=19% Similarity=-0.016 Sum_probs=78.8
Q ss_pred CCCCcEEEEcCcccHHHHHHHHHCCCceEEEEECChHHHHHHHHhcCccccccCCCCcEEEEEcccccc-c---c-CCCe
Q 035593 76 LPPGPIGILGFGAGSAARLILDLYPEAVIHGWELDPSVIKVAREFFALEKLEKSYPDRLFVYVGNALKA-S---L-KDGF 150 (269)
Q Consensus 76 ~~~~~VL~iG~G~G~~~~~l~~~~p~~~v~~vEidp~~~~~a~~~~~~~~~~~~~~~rv~~~~~D~~~~-~---~-~~~y 150 (269)
.+..++||++||+|.++.+++.+. ..+|++||+|+..++.+++++.... ...+++++.+|+.++ . . ...|
T Consensus 48 ~~g~~vLDLfaGsG~lglea~srg-a~~v~~vE~~~~a~~~~~~N~~~~~----~~~~~~~~~~D~~~~l~~~~~~~~~~ 122 (189)
T TIGR00095 48 IQGAHLLDVFAGSGLLGEEALSRG-AKVAFLEEDDRKANQTLKENLALLK----SGEQAEVVRNSALRALKFLAKKPTFD 122 (189)
T ss_pred cCCCEEEEecCCCcHHHHHHHhCC-CCEEEEEeCCHHHHHHHHHHHHHhC----CcccEEEEehhHHHHHHHhhccCCCc
Confidence 357899999999999999999853 3489999999999999999875432 124799999999775 2 1 2358
Q ss_pred eEEEEcCCCCCCCCCCCCcHHHHHHHHh--hccCCcEEEEEec
Q 035593 151 SGILVDLFSKGSLLSELEDPNTWEKLRQ--CLRKGGRIMVNVG 191 (269)
Q Consensus 151 D~I~~d~~~~~~~~~~l~~~e~~~~~~~--~L~pgG~l~~~~~ 191 (269)
|+|+.|.+-.. . ...+.++.+.+ .|+++|++++...
T Consensus 123 dvv~~DPPy~~----~-~~~~~l~~l~~~~~l~~~~iiv~E~~ 160 (189)
T TIGR00095 123 NVIYLDPPFFN----G-ALQALLELCENNWILEDTVLIVVEED 160 (189)
T ss_pred eEEEECcCCCC----C-cHHHHHHHHHHCCCCCCCeEEEEEec
Confidence 99999865332 1 13455555543 6899999888664
No 157
>TIGR00479 rumA 23S rRNA (uracil-5-)-methyltransferase RumA. This protein family was first proposed to be RNA methyltransferases by homology to the TrmA family. The member from E. coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA.
Probab=98.91 E-value=1e-08 Score=95.81 Aligned_cols=102 Identities=14% Similarity=0.093 Sum_probs=78.8
Q ss_pred CCCCCcEEEEcCcccHHHHHHHHHCCCceEEEEECChHHHHHHHHhcCccccccCCCCcEEEEEcccccc-c----cCCC
Q 035593 75 ILPPGPIGILGFGAGSAARLILDLYPEAVIHGWELDPSVIKVAREFFALEKLEKSYPDRLFVYVGNALKA-S----LKDG 149 (269)
Q Consensus 75 l~~~~~VL~iG~G~G~~~~~l~~~~p~~~v~~vEidp~~~~~a~~~~~~~~~~~~~~~rv~~~~~D~~~~-~----~~~~ 149 (269)
+.+..+|||+|||+|.++..+++. ..+|+++|+++.+++.|++++.... -.+++++.+|+.++ . ...+
T Consensus 290 ~~~~~~vLDl~cG~G~~sl~la~~--~~~V~~vE~~~~av~~a~~n~~~~~-----~~nv~~~~~d~~~~l~~~~~~~~~ 362 (431)
T TIGR00479 290 LQGEELVVDAYCGVGTFTLPLAKQ--AKSVVGIEVVPESVEKAQQNAELNG-----IANVEFLAGTLETVLPKQPWAGQI 362 (431)
T ss_pred cCCCCEEEEcCCCcCHHHHHHHHh--CCEEEEEEcCHHHHHHHHHHHHHhC-----CCceEEEeCCHHHHHHHHHhcCCC
Confidence 345689999999999999999874 4589999999999999999875433 24799999999875 1 2457
Q ss_pred eeEEEEcCCCCCCCCCCCCcHHHHHHHHhhccCCcEEEEEe
Q 035593 150 FSGILVDLFSKGSLLSELEDPNTWEKLRQCLRKGGRIMVNV 190 (269)
Q Consensus 150 yD~I~~d~~~~~~~~~~l~~~e~~~~~~~~L~pgG~l~~~~ 190 (269)
||+|++|.+... ...++++.+.+ |+|++++.+.+
T Consensus 363 ~D~vi~dPPr~G------~~~~~l~~l~~-l~~~~ivyvsc 396 (431)
T TIGR00479 363 PDVLLLDPPRKG------CAAEVLRTIIE-LKPERIVYVSC 396 (431)
T ss_pred CCEEEECcCCCC------CCHHHHHHHHh-cCCCEEEEEcC
Confidence 999999865321 13677777664 88988776654
No 158
>TIGR02085 meth_trns_rumB 23S rRNA (uracil-5-)-methyltransferase RumB. This family consists of RNA methyltransferases designated RumB, formerly YbjF. Members act on 23S rRNA U747 and the equivalent position in other proteobacterial species. This family is homologous to the other 23S rRNA methyltransferase RumA and to the tRNA methyltransferase TrmA.
Probab=98.91 E-value=1.1e-08 Score=93.85 Aligned_cols=101 Identities=16% Similarity=0.111 Sum_probs=78.8
Q ss_pred CCCcEEEEcCcccHHHHHHHHHCCCceEEEEECChHHHHHHHHhcCccccccCCCCcEEEEEcccccc-c-cCCCeeEEE
Q 035593 77 PPGPIGILGFGAGSAARLILDLYPEAVIHGWELDPSVIKVAREFFALEKLEKSYPDRLFVYVGNALKA-S-LKDGFSGIL 154 (269)
Q Consensus 77 ~~~~VL~iG~G~G~~~~~l~~~~p~~~v~~vEidp~~~~~a~~~~~~~~~~~~~~~rv~~~~~D~~~~-~-~~~~yD~I~ 154 (269)
+..+|||+|||+|.++..++. ++.+|++||+|+.+++.|++++.... -.+++++.+|+.++ . ..++||+|+
T Consensus 233 ~~~~vLDL~cG~G~~~l~la~--~~~~v~~vE~~~~av~~a~~N~~~~~-----~~~~~~~~~d~~~~~~~~~~~~D~vi 305 (374)
T TIGR02085 233 PVTQMWDLFCGVGGFGLHCAG--PDTQLTGIEIESEAIACAQQSAQMLG-----LDNLSFAALDSAKFATAQMSAPELVL 305 (374)
T ss_pred CCCEEEEccCCccHHHHHHhh--cCCeEEEEECCHHHHHHHHHHHHHcC-----CCcEEEEECCHHHHHHhcCCCCCEEE
Confidence 467899999999999999986 45799999999999999999875432 23799999999876 2 235699999
Q ss_pred EcCCCCCCCCCCCCcHHHHHHHHhhccCCcEEEEEec
Q 035593 155 VDLFSKGSLLSELEDPNTWEKLRQCLRKGGRIMVNVG 191 (269)
Q Consensus 155 ~d~~~~~~~~~~l~~~e~~~~~~~~L~pgG~l~~~~~ 191 (269)
+|.+-.. ...++++.+. .++|++++.+.+.
T Consensus 306 ~DPPr~G------~~~~~l~~l~-~~~p~~ivyvsc~ 335 (374)
T TIGR02085 306 VNPPRRG------IGKELCDYLS-QMAPKFILYSSCN 335 (374)
T ss_pred ECCCCCC------CcHHHHHHHH-hcCCCeEEEEEeC
Confidence 9865321 1356666665 4799998888773
No 159
>PRK07580 Mg-protoporphyrin IX methyl transferase; Validated
Probab=98.90 E-value=1.1e-08 Score=87.30 Aligned_cols=101 Identities=18% Similarity=0.103 Sum_probs=69.8
Q ss_pred CCCCcEEEEcCcccHHHHHHHHHCCCceEEEEECChHHHHHHHHhcCccccccCCCCcEEEEEccccccccCCCeeEEEE
Q 035593 76 LPPGPIGILGFGAGSAARLILDLYPEAVIHGWELDPSVIKVAREFFALEKLEKSYPDRLFVYVGNALKASLKDGFSGILV 155 (269)
Q Consensus 76 ~~~~~VL~iG~G~G~~~~~l~~~~p~~~v~~vEidp~~~~~a~~~~~~~~~~~~~~~rv~~~~~D~~~~~~~~~yD~I~~ 155 (269)
.+..+|||||||+|.++..+++. +.+|+++|+++.+++.|++++.... ...+++++.+|.. ...+.||+|++
T Consensus 62 ~~~~~vLDvGcG~G~~~~~l~~~--~~~v~~~D~s~~~i~~a~~~~~~~~----~~~~i~~~~~d~~--~~~~~fD~v~~ 133 (230)
T PRK07580 62 LTGLRILDAGCGVGSLSIPLARR--GAKVVASDISPQMVEEARERAPEAG----LAGNITFEVGDLE--SLLGRFDTVVC 133 (230)
T ss_pred CCCCEEEEEeCCCCHHHHHHHHc--CCEEEEEECCHHHHHHHHHHHHhcC----CccCcEEEEcCch--hccCCcCEEEE
Confidence 45789999999999999999874 4679999999999999999875322 1247899999932 23568999986
Q ss_pred cCCCCCCCCCCCCcHHHHHHHHhhccCCcEE
Q 035593 156 DLFSKGSLLSELEDPNTWEKLRQCLRKGGRI 186 (269)
Q Consensus 156 d~~~~~~~~~~l~~~e~~~~~~~~L~pgG~l 186 (269)
...-. ..+. -.....++.+.+.+++++++
T Consensus 134 ~~~l~-~~~~-~~~~~~l~~l~~~~~~~~~i 162 (230)
T PRK07580 134 LDVLI-HYPQ-EDAARMLAHLASLTRGSLIF 162 (230)
T ss_pred cchhh-cCCH-HHHHHHHHHHHhhcCCeEEE
Confidence 42111 0111 11246777777766544433
No 160
>KOG1541 consensus Predicted protein carboxyl methylase [General function prediction only]
Probab=98.90 E-value=1e-08 Score=85.26 Aligned_cols=128 Identities=20% Similarity=0.269 Sum_probs=88.8
Q ss_pred CCcEEEEcCcccHHHHHHHHHCCCceEEEEECChHHHHHHHHhcCccccccCCCCcEEEEEcccccc--ccCCCeeEEEE
Q 035593 78 PGPIGILGFGAGSAARLILDLYPEAVIHGWELDPSVIKVAREFFALEKLEKSYPDRLFVYVGNALKA--SLKDGFSGILV 155 (269)
Q Consensus 78 ~~~VL~iG~G~G~~~~~l~~~~p~~~v~~vEidp~~~~~a~~~~~~~~~~~~~~~rv~~~~~D~~~~--~~~~~yD~I~~ 155 (269)
+.-|||||||+|..+..+.. ++-..++|||+|.|+++|.+.- +. -.++.+|+-+- ..++.||.+|+
T Consensus 51 ~~~iLDIGCGsGLSg~vL~~--~Gh~wiGvDiSpsML~~a~~~e-~e---------gdlil~DMG~GlpfrpGtFDg~IS 118 (270)
T KOG1541|consen 51 SGLILDIGCGSGLSGSVLSD--SGHQWIGVDISPSMLEQAVERE-LE---------GDLILCDMGEGLPFRPGTFDGVIS 118 (270)
T ss_pred CcEEEEeccCCCcchheecc--CCceEEeecCCHHHHHHHHHhh-hh---------cCeeeeecCCCCCCCCCccceEEE
Confidence 67799999999999999887 6789999999999999998631 11 35777887654 67789999875
Q ss_pred cC-----CCCCC--CCCCCCcHHHHHHHHhhccCCcEEEEEecCCCccccccccchhHHHHHHH-HHHHHHhcCceEEEE
Q 035593 156 DL-----FSKGS--LLSELEDPNTWEKLRQCLRKGGRIMVNVGGSCVEAEDSRRDGKVVMEATL-KAMHKVFGKKLYVLS 227 (269)
Q Consensus 156 d~-----~~~~~--~~~~l~~~e~~~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~~l~~~F~~~v~~~~ 227 (269)
-. ++... ..+..-...||..++.+|++|+..+++++... +.....+. +++++-|+.- .++.
T Consensus 119 ISAvQWLcnA~~s~~~P~~Rl~~FF~tLy~~l~rg~raV~QfYpen----------~~q~d~i~~~a~~aGF~GG-lvVd 187 (270)
T KOG1541|consen 119 ISAVQWLCNADKSLHVPKKRLLRFFGTLYSCLKRGARAVLQFYPEN----------EAQIDMIMQQAMKAGFGGG-LVVD 187 (270)
T ss_pred eeeeeeecccCccccChHHHHHHHhhhhhhhhccCceeEEEecccc----------hHHHHHHHHHHHhhccCCc-eeee
Confidence 21 11110 11111224789999999999999999997542 33444444 4555568643 3443
Q ss_pred c
Q 035593 228 L 228 (269)
Q Consensus 228 ~ 228 (269)
.
T Consensus 188 ~ 188 (270)
T KOG1541|consen 188 W 188 (270)
T ss_pred c
Confidence 3
No 161
>PLN02585 magnesium protoporphyrin IX methyltransferase
Probab=98.90 E-value=2e-08 Score=89.83 Aligned_cols=104 Identities=10% Similarity=-0.022 Sum_probs=68.9
Q ss_pred CCCcEEEEcCcccHHHHHHHHHCCCceEEEEECChHHHHHHHHhcCccccccCCCCcEEEEEccccccccCCCeeEEEEc
Q 035593 77 PPGPIGILGFGAGSAARLILDLYPEAVIHGWELDPSVIKVAREFFALEKLEKSYPDRLFVYVGNALKASLKDGFSGILVD 156 (269)
Q Consensus 77 ~~~~VL~iG~G~G~~~~~l~~~~p~~~v~~vEidp~~~~~a~~~~~~~~~~~~~~~rv~~~~~D~~~~~~~~~yD~I~~d 156 (269)
++.+|||||||+|.++..+++. +.+|+++|+++.|++.|++++...........++++..+|..+. .++||+|++-
T Consensus 144 ~~~~VLDlGcGtG~~a~~la~~--g~~V~gvD~S~~ml~~A~~~~~~~~~~~~~~~~~~f~~~Dl~~l--~~~fD~Vv~~ 219 (315)
T PLN02585 144 AGVTVCDAGCGTGSLAIPLALE--GAIVSASDISAAMVAEAERRAKEALAALPPEVLPKFEANDLESL--SGKYDTVTCL 219 (315)
T ss_pred CCCEEEEecCCCCHHHHHHHHC--CCEEEEEECCHHHHHHHHHHHHhcccccccccceEEEEcchhhc--CCCcCEEEEc
Confidence 4679999999999999999973 67999999999999999998642100000124678888887654 5789999853
Q ss_pred CCCCCCCCCCCCcHHHHHHHHhhccCCcEEE
Q 035593 157 LFSKGSLLSELEDPNTWEKLRQCLRKGGRIM 187 (269)
Q Consensus 157 ~~~~~~~~~~l~~~e~~~~~~~~L~pgG~l~ 187 (269)
..-. ..+.. ...++++.+.+ +.++|+++
T Consensus 220 ~vL~-H~p~~-~~~~ll~~l~~-l~~g~liI 247 (315)
T PLN02585 220 DVLI-HYPQD-KADGMIAHLAS-LAEKRLII 247 (315)
T ss_pred CEEE-ecCHH-HHHHHHHHHHh-hcCCEEEE
Confidence 1110 11111 11246666664 56666654
No 162
>COG2263 Predicted RNA methylase [Translation, ribosomal structure and biogenesis]
Probab=98.89 E-value=2.4e-08 Score=81.44 Aligned_cols=93 Identities=14% Similarity=0.063 Sum_probs=73.3
Q ss_pred CCCcEEEEcCcccHHHHHHHHHCCCceEEEEECChHHHHHHHHhcCccccccCCCCcEEEEEccccccccCCCeeEEEEc
Q 035593 77 PPGPIGILGFGAGSAARLILDLYPEAVIHGWELDPSVIKVAREFFALEKLEKSYPDRLFVYVGNALKASLKDGFSGILVD 156 (269)
Q Consensus 77 ~~~~VL~iG~G~G~~~~~l~~~~p~~~v~~vEidp~~~~~a~~~~~~~~~~~~~~~rv~~~~~D~~~~~~~~~yD~I~~d 156 (269)
..+.|+|+|||+|.++..++- +...+|++||+||+.+++|+++.+.- ..++.++++|..++ ..++|.++++
T Consensus 45 ~g~~V~DlG~GTG~La~ga~~-lGa~~V~~vdiD~~a~ei~r~N~~~l------~g~v~f~~~dv~~~--~~~~dtvimN 115 (198)
T COG2263 45 EGKTVLDLGAGTGILAIGAAL-LGASRVLAVDIDPEALEIARANAEEL------LGDVEFVVADVSDF--RGKFDTVIMN 115 (198)
T ss_pred CCCEEEEcCCCcCHHHHHHHh-cCCcEEEEEecCHHHHHHHHHHHHhh------CCceEEEEcchhhc--CCccceEEEC
Confidence 577899999999999998876 45579999999999999999987531 35799999999887 4578899988
Q ss_pred CCCCCCCCCCCCcHHHHHHHHhhc
Q 035593 157 LFSKGSLLSELEDPNTWEKLRQCL 180 (269)
Q Consensus 157 ~~~~~~~~~~l~~~e~~~~~~~~L 180 (269)
.+-... ..+ ....|+..+.+.-
T Consensus 116 PPFG~~-~rh-aDr~Fl~~Ale~s 137 (198)
T COG2263 116 PPFGSQ-RRH-ADRPFLLKALEIS 137 (198)
T ss_pred CCCccc-ccc-CCHHHHHHHHHhh
Confidence 654422 234 4678888887764
No 163
>KOG2904 consensus Predicted methyltransferase [General function prediction only]
Probab=98.85 E-value=7.3e-08 Score=82.72 Aligned_cols=113 Identities=18% Similarity=0.146 Sum_probs=83.4
Q ss_pred CCCcEEEEcCcccHHHHHHHHHCCCceEEEEECChHHHHHHHHhcCccccccCCCCcEEEEEccccc----c--ccCCCe
Q 035593 77 PPGPIGILGFGAGSAARLILDLYPEAVIHGWELDPSVIKVAREFFALEKLEKSYPDRLFVYVGNALK----A--SLKDGF 150 (269)
Q Consensus 77 ~~~~VL~iG~G~G~~~~~l~~~~p~~~v~~vEidp~~~~~a~~~~~~~~~~~~~~~rv~~~~~D~~~----~--~~~~~y 150 (269)
.+..+||+|||+|+++..+++..|..+|++||.++..+.+|.++..... ...++.+++-+... - ...+++
T Consensus 148 ~~~~ildlgtGSGaIslsll~~L~~~~v~AiD~S~~Ai~La~eN~qr~~----l~g~i~v~~~~me~d~~~~~~l~~~~~ 223 (328)
T KOG2904|consen 148 KHTHILDLGTGSGAISLSLLHGLPQCTVTAIDVSKAAIKLAKENAQRLK----LSGRIEVIHNIMESDASDEHPLLEGKI 223 (328)
T ss_pred ccceEEEecCCccHHHHHHHhcCCCceEEEEeccHHHHHHHHHHHHHHh----hcCceEEEecccccccccccccccCce
Confidence 3557999999999999999998999999999999999999998874322 13588888655443 2 345799
Q ss_pred eEEEEcCCCCCC--C----------CCC--C--------CcHHHHHHHHhhccCCcEEEEEecCC
Q 035593 151 SGILVDLFSKGS--L----------LSE--L--------EDPNTWEKLRQCLRKGGRIMVNVGGS 193 (269)
Q Consensus 151 D~I~~d~~~~~~--~----------~~~--l--------~~~e~~~~~~~~L~pgG~l~~~~~~~ 193 (269)
|+|+++.+--.. . .+. | ....++..+.++|+|||.+.++....
T Consensus 224 dllvsNPPYI~~dD~~~l~~eV~~yEp~lALdGg~eG~~~~~~~~~~a~R~Lq~gg~~~le~~~~ 288 (328)
T KOG2904|consen 224 DLLVSNPPYIRKDDNRQLKPEVRLYEPKLALDGGLEGYDNLVHYWLLATRMLQPGGFEQLELVER 288 (328)
T ss_pred eEEecCCCcccccchhhcCchheecCchhhhccccchhHHHHHHHHhhHhhcccCCeEEEEeccc
Confidence 999987421100 0 111 1 11357778889999999999998744
No 164
>KOG3010 consensus Methyltransferase [General function prediction only]
Probab=98.83 E-value=8.1e-09 Score=87.04 Aligned_cols=104 Identities=17% Similarity=0.133 Sum_probs=77.5
Q ss_pred CCcEEEEcCcccHHHHHHHHHCCCceEEEEECChHHHHHHHHhcCccccccCCCCcEEEEEcccccc-ccCCCeeEEEEc
Q 035593 78 PGPIGILGFGAGSAARLILDLYPEAVIHGWELDPSVIKVAREFFALEKLEKSYPDRLFVYVGNALKA-SLKDGFSGILVD 156 (269)
Q Consensus 78 ~~~VL~iG~G~G~~~~~l~~~~p~~~v~~vEidp~~~~~a~~~~~~~~~~~~~~~rv~~~~~D~~~~-~~~~~yD~I~~d 156 (269)
.+.++|+|||+|..++.++.++. +|+++|++++|+++|++++.... .....+....++..+ ..+++.|+|++-
T Consensus 34 h~~a~DvG~G~Gqa~~~iae~~k--~VIatD~s~~mL~~a~k~~~~~y----~~t~~~ms~~~~v~L~g~e~SVDlI~~A 107 (261)
T KOG3010|consen 34 HRLAWDVGTGNGQAARGIAEHYK--EVIATDVSEAMLKVAKKHPPVTY----CHTPSTMSSDEMVDLLGGEESVDLITAA 107 (261)
T ss_pred cceEEEeccCCCcchHHHHHhhh--hheeecCCHHHHHHhhcCCCccc----ccCCccccccccccccCCCcceeeehhh
Confidence 34899999999988888888653 79999999999999999875321 122344444555555 457899999852
Q ss_pred CCCCCCCCCCCCcHHHHHHHHhhccCCc-EEEEEecC
Q 035593 157 LFSKGSLLSELEDPNTWEKLRQCLRKGG-RIMVNVGG 192 (269)
Q Consensus 157 ~~~~~~~~~~l~~~e~~~~~~~~L~pgG-~l~~~~~~ 192 (269)
- ....+..++|++.+++.|++.| +++++...
T Consensus 108 q-----a~HWFdle~fy~~~~rvLRk~Gg~iavW~Y~ 139 (261)
T KOG3010|consen 108 Q-----AVHWFDLERFYKEAYRVLRKDGGLIAVWNYN 139 (261)
T ss_pred h-----hHHhhchHHHHHHHHHHcCCCCCEEEEEEcc
Confidence 1 1223556899999999998866 88888766
No 165
>PRK11727 23S rRNA mA1618 methyltransferase; Provisional
Probab=98.83 E-value=3.2e-08 Score=88.43 Aligned_cols=78 Identities=15% Similarity=0.129 Sum_probs=61.4
Q ss_pred CCCcEEEEcCcccHHHHHHHHHCCCceEEEEECChHHHHHHHHhcCcc-ccccCCCCcEEEEE-cccccc-----ccCCC
Q 035593 77 PPGPIGILGFGAGSAARLILDLYPEAVIHGWELDPSVIKVAREFFALE-KLEKSYPDRLFVYV-GNALKA-----SLKDG 149 (269)
Q Consensus 77 ~~~~VL~iG~G~G~~~~~l~~~~p~~~v~~vEidp~~~~~a~~~~~~~-~~~~~~~~rv~~~~-~D~~~~-----~~~~~ 149 (269)
+..++||||||+|.+...+..+.++.+++++|||+..++.|++++..+ .+ ..+++++. .|.... ...++
T Consensus 114 ~~~~vLDIGtGag~I~~lLa~~~~~~~~~atDId~~Al~~A~~Nv~~Np~l----~~~I~~~~~~~~~~i~~~i~~~~~~ 189 (321)
T PRK11727 114 ANVRVLDIGVGANCIYPLIGVHEYGWRFVGSDIDPQALASAQAIISANPGL----NGAIRLRLQKDSKAIFKGIIHKNER 189 (321)
T ss_pred CCceEEEecCCccHHHHHHHhhCCCCEEEEEeCCHHHHHHHHHHHHhccCC----cCcEEEEEccchhhhhhcccccCCc
Confidence 357999999999999888887778899999999999999999998655 22 35788865 333332 23568
Q ss_pred eeEEEEcCC
Q 035593 150 FSGILVDLF 158 (269)
Q Consensus 150 yD~I~~d~~ 158 (269)
||+|+++.+
T Consensus 190 fDlivcNPP 198 (321)
T PRK11727 190 FDATLCNPP 198 (321)
T ss_pred eEEEEeCCC
Confidence 999999754
No 166
>PF10672 Methyltrans_SAM: S-adenosylmethionine-dependent methyltransferase; InterPro: IPR019614 Members of this entry are S-adenosylmethionine-dependent methyltransferases from gamma-proteobacterial species. The diversity in the roles of methylation is matched by the almost bewildering number of methyltransferase enzymes that catalyse the methylation reaction. Although several classes of methyltransferase enzymes are known, the great majority of methylation reactions are catalysed by the S-adenosylmethionine-dependent methyltransferases. SAM (S-adenosylmethionine, also known as AdoMet) is well known as the methyl donor for the majority of methyltransferases that modify DNA, RNA, histones and other proteins, dictating replicational, transcriptional and translational fidelity, mismatch repair, chromatin modelling, epigenetic modifications and imprinting [].; GO: 0008168 methyltransferase activity; PDB: 2IGT_B 1WXX_A 1WXW_D 2CWW_B 2AS0_B 3V8V_B 3V97_A 3C0K_A 2B78_A 3LDF_A.
Probab=98.81 E-value=4.2e-08 Score=86.30 Aligned_cols=114 Identities=17% Similarity=0.062 Sum_probs=80.2
Q ss_pred CCCcEEEEcCcccHHHHHHHHHCCCceEEEEECChHHHHHHHHhcCccccccCCCCcEEEEEcccccc----ccCCCeeE
Q 035593 77 PPGPIGILGFGAGSAARLILDLYPEAVIHGWELDPSVIKVAREFFALEKLEKSYPDRLFVYVGNALKA----SLKDGFSG 152 (269)
Q Consensus 77 ~~~~VL~iG~G~G~~~~~l~~~~p~~~v~~vEidp~~~~~a~~~~~~~~~~~~~~~rv~~~~~D~~~~----~~~~~yD~ 152 (269)
..++||++=|=+|+.+.+++. ....+|+.||+|...++.|++++.++.. +..+++++.+|+.++ ...++||+
T Consensus 123 ~gkrvLnlFsYTGgfsv~Aa~-gGA~~v~~VD~S~~al~~a~~N~~lNg~---~~~~~~~~~~Dvf~~l~~~~~~~~fD~ 198 (286)
T PF10672_consen 123 KGKRVLNLFSYTGGFSVAAAA-GGAKEVVSVDSSKRALEWAKENAALNGL---DLDRHRFIQGDVFKFLKRLKKGGRFDL 198 (286)
T ss_dssp TTCEEEEET-TTTHHHHHHHH-TTESEEEEEES-HHHHHHHHHHHHHTT----CCTCEEEEES-HHHHHHHHHHTT-EEE
T ss_pred CCCceEEecCCCCHHHHHHHH-CCCCEEEEEeCCHHHHHHHHHHHHHcCC---CccceEEEecCHHHHHHHHhcCCCCCE
Confidence 578999999999999998876 2334899999999999999999877642 246899999999986 34679999
Q ss_pred EEEcCCCCCCCCCCC--CcHHHHHHHHhhccCCcEEEEEecCCC
Q 035593 153 ILVDLFSKGSLLSEL--EDPNTWEKLRQCLRKGGRIMVNVGGSC 194 (269)
Q Consensus 153 I~~d~~~~~~~~~~l--~~~e~~~~~~~~L~pgG~l~~~~~~~~ 194 (269)
||+|+++-......+ .-.+.+..+.+.|+|||.+++...+..
T Consensus 199 IIlDPPsF~k~~~~~~~~y~~L~~~a~~ll~~gG~l~~~scs~~ 242 (286)
T PF10672_consen 199 IILDPPSFAKSKFDLERDYKKLLRRAMKLLKPGGLLLTCSCSHH 242 (286)
T ss_dssp EEE--SSEESSTCEHHHHHHHHHHHHHHTEEEEEEEEEEE--TT
T ss_pred EEECCCCCCCCHHHHHHHHHHHHHHHHHhcCCCCEEEEEcCCcc
Confidence 999976431111111 013677888899999999887666553
No 167
>PRK14896 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Provisional
Probab=98.80 E-value=9.6e-08 Score=83.28 Aligned_cols=84 Identities=20% Similarity=0.259 Sum_probs=66.4
Q ss_pred HHHHHhcCCCCCCCCcEEEEcCcccHHHHHHHHHCCCceEEEEECChHHHHHHHHhcCccccccCCCCcEEEEEcccccc
Q 035593 65 YFDAFATLPPILPPGPIGILGFGAGSAARLILDLYPEAVIHGWELDPSVIKVAREFFALEKLEKSYPDRLFVYVGNALKA 144 (269)
Q Consensus 65 y~~~~~~~~~l~~~~~VL~iG~G~G~~~~~l~~~~p~~~v~~vEidp~~~~~a~~~~~~~~~~~~~~~rv~~~~~D~~~~ 144 (269)
..+.++....+.+..+|||||||+|.++..+++. ..+|+++|+|+.+++.+++.+.. .++++++++|+.++
T Consensus 17 ~~~~iv~~~~~~~~~~VLEIG~G~G~lt~~L~~~--~~~v~~vEid~~~~~~l~~~~~~-------~~~v~ii~~D~~~~ 87 (258)
T PRK14896 17 VVDRIVEYAEDTDGDPVLEIGPGKGALTDELAKR--AKKVYAIELDPRLAEFLRDDEIA-------AGNVEIIEGDALKV 87 (258)
T ss_pred HHHHHHHhcCCCCcCeEEEEeCccCHHHHHHHHh--CCEEEEEECCHHHHHHHHHHhcc-------CCCEEEEEeccccC
Confidence 4445544434557889999999999999999985 46899999999999999988742 25799999999886
Q ss_pred ccCCCeeEEEEcCC
Q 035593 145 SLKDGFSGILVDLF 158 (269)
Q Consensus 145 ~~~~~yD~I~~d~~ 158 (269)
.. ..||.|+.+++
T Consensus 88 ~~-~~~d~Vv~NlP 100 (258)
T PRK14896 88 DL-PEFNKVVSNLP 100 (258)
T ss_pred Cc-hhceEEEEcCC
Confidence 32 24899998643
No 168
>PRK00274 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Reviewed
Probab=98.80 E-value=2.8e-08 Score=87.27 Aligned_cols=82 Identities=23% Similarity=0.319 Sum_probs=63.3
Q ss_pred HHHHhcCCCCCCCCcEEEEcCcccHHHHHHHHHCCCceEEEEECChHHHHHHHHhcCccccccCCCCcEEEEEccccccc
Q 035593 66 FDAFATLPPILPPGPIGILGFGAGSAARLILDLYPEAVIHGWELDPSVIKVAREFFALEKLEKSYPDRLFVYVGNALKAS 145 (269)
Q Consensus 66 ~~~~~~~~~l~~~~~VL~iG~G~G~~~~~l~~~~p~~~v~~vEidp~~~~~a~~~~~~~~~~~~~~~rv~~~~~D~~~~~ 145 (269)
.+.++....+.++.+|||||||+|.++..++++.+ +|+++|+|+++++.+++.+. .++++++++|+.++.
T Consensus 31 ~~~i~~~l~~~~~~~VLEiG~G~G~lt~~L~~~~~--~v~avE~d~~~~~~~~~~~~--------~~~v~~i~~D~~~~~ 100 (272)
T PRK00274 31 LDKIVDAAGPQPGDNVLEIGPGLGALTEPLLERAA--KVTAVEIDRDLAPILAETFA--------EDNLTIIEGDALKVD 100 (272)
T ss_pred HHHHHHhcCCCCcCeEEEeCCCccHHHHHHHHhCC--cEEEEECCHHHHHHHHHhhc--------cCceEEEEChhhcCC
Confidence 34444333455678999999999999999998743 89999999999999998763 257999999999873
Q ss_pred cCCC-eeEEEEcC
Q 035593 146 LKDG-FSGILVDL 157 (269)
Q Consensus 146 ~~~~-yD~I~~d~ 157 (269)
.... +|.|+.+.
T Consensus 101 ~~~~~~~~vv~Nl 113 (272)
T PRK00274 101 LSELQPLKVVANL 113 (272)
T ss_pred HHHcCcceEEEeC
Confidence 2222 58888753
No 169
>TIGR00308 TRM1 tRNA(guanine-26,N2-N2) methyltransferase. This enzyme is responsible for two methylations of a characteristic guanine of most tRNA molecules. The activity has been demonstrated for eukaryotic and archaeal proteins, which are active when expressed in E. coli, a species that lacks this enzyme. At least one Eubacterium, Aquifex aeolicus, has an ortholog, as do all completed archaeal genomes.
Probab=98.79 E-value=3.4e-08 Score=90.21 Aligned_cols=99 Identities=13% Similarity=0.078 Sum_probs=83.5
Q ss_pred CcEEEEcCcccHHHHHHHHHCCC-ceEEEEECChHHHHHHHHhcCccccccCCCCcEEEEEcccccc--ccCCCeeEEEE
Q 035593 79 GPIGILGFGAGSAARLILDLYPE-AVIHGWELDPSVIKVAREFFALEKLEKSYPDRLFVYVGNALKA--SLKDGFSGILV 155 (269)
Q Consensus 79 ~~VL~iG~G~G~~~~~l~~~~p~-~~v~~vEidp~~~~~a~~~~~~~~~~~~~~~rv~~~~~D~~~~--~~~~~yD~I~~ 155 (269)
.+|||+.+|+|..+..++...++ .+|+++|+||..++.++++..++. -.+++++.+|+..+ ....+||+|++
T Consensus 46 ~~vLD~faGsG~rgir~a~e~~ga~~Vv~nD~n~~Av~~i~~N~~~N~-----~~~~~v~~~Da~~~l~~~~~~fDvIdl 120 (374)
T TIGR00308 46 INIADALSASGIRAIRYAHEIEGVREVFANDINPKAVESIKNNVEYNS-----VENIEVPNEDAANVLRYRNRKFHVIDI 120 (374)
T ss_pred CEEEECCCchhHHHHHHHhhCCCCCEEEEEeCCHHHHHHHHHHHHHhC-----CCcEEEEchhHHHHHHHhCCCCCEEEe
Confidence 58999999999999999886544 599999999999999999986553 23689999999988 33468999999
Q ss_pred cCCCCCCCCCCCCcHHHHHHHHhhccCCcEEEEEe
Q 035593 156 DLFSKGSLLSELEDPNTWEKLRQCLRKGGRIMVNV 190 (269)
Q Consensus 156 d~~~~~~~~~~l~~~e~~~~~~~~L~pgG~l~~~~ 190 (269)
|.|.. ..+|+..+.+.++++|++.+..
T Consensus 121 DPfGs--------~~~fld~al~~~~~~glL~vTa 147 (374)
T TIGR00308 121 DPFGT--------PAPFVDSAIQASAERGLLLVTA 147 (374)
T ss_pred CCCCC--------cHHHHHHHHHhcccCCEEEEEe
Confidence 98742 2479999999999999999874
No 170
>PTZ00338 dimethyladenosine transferase-like protein; Provisional
Probab=98.79 E-value=6.4e-08 Score=85.82 Aligned_cols=100 Identities=21% Similarity=0.340 Sum_probs=73.1
Q ss_pred HHHHHhcCCCCCCCCcEEEEcCcccHHHHHHHHHCCCceEEEEECChHHHHHHHHhcCccccccCCCCcEEEEEcccccc
Q 035593 65 YFDAFATLPPILPPGPIGILGFGAGSAARLILDLYPEAVIHGWELDPSVIKVAREFFALEKLEKSYPDRLFVYVGNALKA 144 (269)
Q Consensus 65 y~~~~~~~~~l~~~~~VL~iG~G~G~~~~~l~~~~p~~~v~~vEidp~~~~~a~~~~~~~~~~~~~~~rv~~~~~D~~~~ 144 (269)
..+.++....+.+..+|||||||.|.++..+++. ..+|+++|+|+.+++.+++.+.... ..++++++.+|+...
T Consensus 24 i~~~Iv~~~~~~~~~~VLEIG~G~G~LT~~Ll~~--~~~V~avEiD~~li~~l~~~~~~~~----~~~~v~ii~~Dal~~ 97 (294)
T PTZ00338 24 VLDKIVEKAAIKPTDTVLEIGPGTGNLTEKLLQL--AKKVIAIEIDPRMVAELKKRFQNSP----LASKLEVIEGDALKT 97 (294)
T ss_pred HHHHHHHhcCCCCcCEEEEecCchHHHHHHHHHh--CCcEEEEECCHHHHHHHHHHHHhcC----CCCcEEEEECCHhhh
Confidence 3444544434567889999999999999999984 5689999999999999999874321 135899999999876
Q ss_pred ccCCCeeEEEEcCCCCCCCCCCCCcHHHHHHHH
Q 035593 145 SLKDGFSGILVDLFSKGSLLSELEDPNTWEKLR 177 (269)
Q Consensus 145 ~~~~~yD~I~~d~~~~~~~~~~l~~~e~~~~~~ 177 (269)
.. ..||.|+.+++ ....++..++.+.
T Consensus 98 ~~-~~~d~VvaNlP------Y~Istpil~~ll~ 123 (294)
T PTZ00338 98 EF-PYFDVCVANVP------YQISSPLVFKLLA 123 (294)
T ss_pred cc-cccCEEEecCC------cccCcHHHHHHHh
Confidence 32 36899987543 2334555555553
No 171
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=98.79 E-value=1.9e-09 Score=90.08 Aligned_cols=99 Identities=19% Similarity=0.223 Sum_probs=76.0
Q ss_pred CCcEEEEcCcccHHHHHHHHHCCCceEEEEECChHHHHHHHHhcCccccccCCCCcEEEEEcccccc---ccCCCeeEEE
Q 035593 78 PGPIGILGFGAGSAARLILDLYPEAVIHGWELDPSVIKVAREFFALEKLEKSYPDRLFVYVGNALKA---SLKDGFSGIL 154 (269)
Q Consensus 78 ~~~VL~iG~G~G~~~~~l~~~~p~~~v~~vEidp~~~~~a~~~~~~~~~~~~~~~rv~~~~~D~~~~---~~~~~yD~I~ 154 (269)
-+++||||||||..+..|... ..++++||||+.|++.|.++-.. =++.++|+..| ..+++||+|.
T Consensus 126 F~~~lDLGCGTGL~G~~lR~~--a~~ltGvDiS~nMl~kA~eKg~Y----------D~L~~Aea~~Fl~~~~~er~DLi~ 193 (287)
T COG4976 126 FRRMLDLGCGTGLTGEALRDM--ADRLTGVDISENMLAKAHEKGLY----------DTLYVAEAVLFLEDLTQERFDLIV 193 (287)
T ss_pred cceeeecccCcCcccHhHHHH--HhhccCCchhHHHHHHHHhccch----------HHHHHHHHHHHhhhccCCcccchh
Confidence 579999999999999998763 56899999999999999887322 15566777767 5678999997
Q ss_pred E-cCCCCCCCCCCCCcHHHHHHHHhhccCCcEEEEEecCC
Q 035593 155 V-DLFSKGSLLSELEDPNTWEKLRQCLRKGGRIMVNVGGS 193 (269)
Q Consensus 155 ~-d~~~~~~~~~~l~~~e~~~~~~~~L~pgG~l~~~~~~~ 193 (269)
. |... +.. ..+.+|-.+...|+|||.|++.+-.-
T Consensus 194 AaDVl~---YlG--~Le~~~~~aa~~L~~gGlfaFSvE~l 228 (287)
T COG4976 194 AADVLP---YLG--ALEGLFAGAAGLLAPGGLFAFSVETL 228 (287)
T ss_pred hhhHHH---hhc--chhhHHHHHHHhcCCCceEEEEeccc
Confidence 4 2111 111 13678999999999999999987543
No 172
>PF03602 Cons_hypoth95: Conserved hypothetical protein 95; InterPro: IPR004398 This entry contains Ribosomal RNA small subunit methyltransferase D as well as the putative rRNA methyltransferase YlbH. They methylate the guanosine in position 966 of 16S rRNA in the assembled 30S particle [].; GO: 0008168 methyltransferase activity, 0031167 rRNA methylation; PDB: 3P9N_A 2ESR_B 2IFT_A 1WS6_A 2FPO_B 2FHP_A.
Probab=98.75 E-value=1.8e-08 Score=83.34 Aligned_cols=109 Identities=20% Similarity=0.149 Sum_probs=78.3
Q ss_pred CCCCcEEEEcCcccHHHHHHHHHCCCceEEEEECChHHHHHHHHhcCccccccCCCCcEEEEEcccccc-----ccCCCe
Q 035593 76 LPPGPIGILGFGAGSAARLILDLYPEAVIHGWELDPSVIKVAREFFALEKLEKSYPDRLFVYVGNALKA-----SLKDGF 150 (269)
Q Consensus 76 ~~~~~VL~iG~G~G~~~~~l~~~~p~~~v~~vEidp~~~~~a~~~~~~~~~~~~~~~rv~~~~~D~~~~-----~~~~~y 150 (269)
.+..++||+-+|+|+++.+.+.+ ...+|+.||.|+..++..++++..-. ...+++++.+|+..+ ....+|
T Consensus 41 ~~g~~vLDLFaGSGalGlEALSR-GA~~v~fVE~~~~a~~~i~~N~~~l~----~~~~~~v~~~d~~~~l~~~~~~~~~f 115 (183)
T PF03602_consen 41 LEGARVLDLFAGSGALGLEALSR-GAKSVVFVEKNRKAIKIIKKNLEKLG----LEDKIRVIKGDAFKFLLKLAKKGEKF 115 (183)
T ss_dssp HTT-EEEETT-TTSHHHHHHHHT-T-SEEEEEES-HHHHHHHHHHHHHHT-----GGGEEEEESSHHHHHHHHHHCTS-E
T ss_pred cCCCeEEEcCCccCccHHHHHhc-CCCeEEEEECCHHHHHHHHHHHHHhC----CCcceeeeccCHHHHHHhhcccCCCc
Confidence 46889999999999999998874 35699999999999999999874221 124799999998876 246899
Q ss_pred eEEEEcCCCCCCCCCCCCcHHHHHHHH--hhccCCcEEEEEecCC
Q 035593 151 SGILVDLFSKGSLLSELEDPNTWEKLR--QCLRKGGRIMVNVGGS 193 (269)
Q Consensus 151 D~I~~d~~~~~~~~~~l~~~e~~~~~~--~~L~pgG~l~~~~~~~ 193 (269)
|+|++|++-.. .....+.++.+. ..|+++|++++-....
T Consensus 116 DiIflDPPY~~----~~~~~~~l~~l~~~~~l~~~~~ii~E~~~~ 156 (183)
T PF03602_consen 116 DIIFLDPPYAK----GLYYEELLELLAENNLLNEDGLIIIEHSKK 156 (183)
T ss_dssp EEEEE--STTS----CHHHHHHHHHHHHTTSEEEEEEEEEEEETT
T ss_pred eEEEECCCccc----chHHHHHHHHHHHCCCCCCCEEEEEEecCC
Confidence 99999854221 111256777776 7899999999987544
No 173
>COG0030 KsgA Dimethyladenosine transferase (rRNA methylation) [Translation, ribosomal structure and biogenesis]
Probab=98.74 E-value=1.6e-07 Score=81.07 Aligned_cols=102 Identities=24% Similarity=0.294 Sum_probs=77.0
Q ss_pred HHHHhcCCCCCCCCcEEEEcCcccHHHHHHHHHCCCceEEEEECChHHHHHHHHhcCccccccCCCCcEEEEEccccccc
Q 035593 66 FDAFATLPPILPPGPIGILGFGAGSAARLILDLYPEAVIHGWELDPSVIKVAREFFALEKLEKSYPDRLFVYVGNALKAS 145 (269)
Q Consensus 66 ~~~~~~~~~l~~~~~VL~iG~G~G~~~~~l~~~~p~~~v~~vEidp~~~~~a~~~~~~~~~~~~~~~rv~~~~~D~~~~~ 145 (269)
.+.++....+.+...|||||+|.|.++..|+++ ..+|++||+|+.+++..++.+.. .++++++++|+..+.
T Consensus 19 ~~kIv~~a~~~~~d~VlEIGpG~GaLT~~Ll~~--~~~v~aiEiD~~l~~~L~~~~~~-------~~n~~vi~~DaLk~d 89 (259)
T COG0030 19 IDKIVEAANISPGDNVLEIGPGLGALTEPLLER--AARVTAIEIDRRLAEVLKERFAP-------YDNLTVINGDALKFD 89 (259)
T ss_pred HHHHHHhcCCCCCCeEEEECCCCCHHHHHHHhh--cCeEEEEEeCHHHHHHHHHhccc-------ccceEEEeCchhcCc
Confidence 455554445566889999999999999999984 56899999999999999998862 368999999999984
Q ss_pred cCC--CeeEEEEcCCCCCCCCCCCCcHHHHHHHHhhccC
Q 035593 146 LKD--GFSGILVDLFSKGSLLSELEDPNTWEKLRQCLRK 182 (269)
Q Consensus 146 ~~~--~yD~I~~d~~~~~~~~~~l~~~e~~~~~~~~L~p 182 (269)
.+. .++.|+.+++ ....++=.++.+......
T Consensus 90 ~~~l~~~~~vVaNlP------Y~Isspii~kll~~~~~~ 122 (259)
T COG0030 90 FPSLAQPYKVVANLP------YNISSPILFKLLEEKFII 122 (259)
T ss_pred chhhcCCCEEEEcCC------CcccHHHHHHHHhccCcc
Confidence 443 7888987643 334455555555555544
No 174
>PRK11933 yebU rRNA (cytosine-C(5)-)-methyltransferase RsmF; Reviewed
Probab=98.72 E-value=4.8e-07 Score=84.98 Aligned_cols=115 Identities=17% Similarity=0.139 Sum_probs=88.6
Q ss_pred CCCCCcEEEEcCcccHHHHHHHHHCC-CceEEEEECChHHHHHHHHhcCccccccCCCCcEEEEEcccccc--ccCCCee
Q 035593 75 ILPPGPIGILGFGAGSAARLILDLYP-EAVIHGWELDPSVIKVAREFFALEKLEKSYPDRLFVYVGNALKA--SLKDGFS 151 (269)
Q Consensus 75 l~~~~~VL~iG~G~G~~~~~l~~~~p-~~~v~~vEidp~~~~~a~~~~~~~~~~~~~~~rv~~~~~D~~~~--~~~~~yD 151 (269)
..|+.+|||+++|.|+=+.+++.... ...|+++|+++.-++..++++..-. -.++.+...|+..+ .....||
T Consensus 111 ~~pg~~VLD~CAAPGgKTt~la~~l~~~g~lvA~D~~~~R~~~L~~nl~r~G-----~~nv~v~~~D~~~~~~~~~~~fD 185 (470)
T PRK11933 111 DNAPQRVLDMAAAPGSKTTQIAALMNNQGAIVANEYSASRVKVLHANISRCG-----VSNVALTHFDGRVFGAALPETFD 185 (470)
T ss_pred CCCCCEEEEeCCCccHHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHcC-----CCeEEEEeCchhhhhhhchhhcC
Confidence 35788999999999999999998765 4699999999999999988764211 24689999999876 3456799
Q ss_pred EEEEcCCCCCC-CC---C-C--C-----------CcHHHHHHHHhhccCCcEEEEEecCCC
Q 035593 152 GILVDLFSKGS-LL---S-E--L-----------EDPNTWEKLRQCLRKGGRIMVNVGGSC 194 (269)
Q Consensus 152 ~I~~d~~~~~~-~~---~-~--l-----------~~~e~~~~~~~~L~pgG~l~~~~~~~~ 194 (269)
.|++|++-+.. +. + . . ...++++.+.+.|||||+|+....+..
T Consensus 186 ~ILvDaPCSG~G~~rk~p~~~~~~s~~~v~~l~~lQ~~iL~~A~~~LkpGG~LVYSTCT~~ 246 (470)
T PRK11933 186 AILLDAPCSGEGTVRKDPDALKNWSPESNLEIAATQRELIESAFHALKPGGTLVYSTCTLN 246 (470)
T ss_pred eEEEcCCCCCCcccccCHHHhhhCCHHHHHHHHHHHHHHHHHHHHHcCCCcEEEEECCCCC
Confidence 99999865522 21 0 0 0 125789999999999999988877654
No 175
>PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed
Probab=98.72 E-value=1.9e-07 Score=88.77 Aligned_cols=108 Identities=13% Similarity=0.150 Sum_probs=87.6
Q ss_pred CCcEEEEcCcccHHHHHHHHHCCCceEEEEECChHHHHHHHHhcCccccccCCCCcEEEEEcccccc---ccCCCeeEEE
Q 035593 78 PGPIGILGFGAGSAARLILDLYPEAVIHGWELDPSVIKVAREFFALEKLEKSYPDRLFVYVGNALKA---SLKDGFSGIL 154 (269)
Q Consensus 78 ~~~VL~iG~G~G~~~~~l~~~~p~~~v~~vEidp~~~~~a~~~~~~~~~~~~~~~rv~~~~~D~~~~---~~~~~yD~I~ 154 (269)
...+||||||.|.....+++.+|+..+.++|+....+..|.+.....+ -.++.++.+|+..+ ..+.+.|.|+
T Consensus 348 ~p~~lEIG~G~G~~~~~~A~~~p~~~~iGiE~~~~~~~~~~~~~~~~~-----l~N~~~~~~~~~~~~~~~~~~sv~~i~ 422 (506)
T PRK01544 348 RKVFLEIGFGMGEHFINQAKMNPDALFIGVEVYLNGVANVLKLAGEQN-----ITNFLLFPNNLDLILNDLPNNSLDGIY 422 (506)
T ss_pred CceEEEECCCchHHHHHHHHhCCCCCEEEEEeeHHHHHHHHHHHHHcC-----CCeEEEEcCCHHHHHHhcCcccccEEE
Confidence 578999999999999999999999999999999998877766542221 24688898887644 4567899999
Q ss_pred EcCCCCCCC----CCCCCcHHHHHHHHhhccCCcEEEEEe
Q 035593 155 VDLFSKGSL----LSELEDPNTWEKLRQCLRKGGRIMVNV 190 (269)
Q Consensus 155 ~d~~~~~~~----~~~l~~~e~~~~~~~~L~pgG~l~~~~ 190 (269)
+..++++.- -..+...+|++.+.+.|+|||.+-+-.
T Consensus 423 i~FPDPWpKkrh~krRl~~~~fl~~~~~~Lk~gG~i~~~T 462 (506)
T PRK01544 423 ILFPDPWIKNKQKKKRIFNKERLKILQDKLKDNGNLVFAS 462 (506)
T ss_pred EECCCCCCCCCCccccccCHHHHHHHHHhcCCCCEEEEEc
Confidence 988777532 124778999999999999999998765
No 176
>KOG1499 consensus Protein arginine N-methyltransferase PRMT1 and related enzymes [Posttranslational modification, protein turnover, chaperones; Transcription; Signal transduction mechanisms]
Probab=98.71 E-value=3.2e-08 Score=87.82 Aligned_cols=126 Identities=16% Similarity=0.098 Sum_probs=89.8
Q ss_pred eeeeeecCCcccchHHHHHhcCCCCCCCCcEEEEcCcccHHHHHHHHHCCCceEEEEECChHHHHHHHHhcCccccccCC
Q 035593 51 IHSISYLFRSLTNTYFDAFATLPPILPPGPIGILGFGAGSAARLILDLYPEAVIHGWELDPSVIKVAREFFALEKLEKSY 130 (269)
Q Consensus 51 ~qs~~~~~~~l~~~y~~~~~~~~~l~~~~~VL~iG~G~G~~~~~l~~~~p~~~v~~vEidp~~~~~a~~~~~~~~~~~~~ 130 (269)
+|-+|..+..-...|...+.....+...+.|||+|||+|.++.+.++.. ..+|.+||-+. +++.|++-+..+. .
T Consensus 34 iheeML~D~VRt~aYr~~i~~n~~lf~dK~VlDVGcGtGILS~F~akAG-A~~V~aVe~S~-ia~~a~~iv~~N~----~ 107 (346)
T KOG1499|consen 34 IHEEMLKDSVRTLAYRNAILQNKHLFKDKTVLDVGCGTGILSMFAAKAG-ARKVYAVEASS-IADFARKIVKDNG----L 107 (346)
T ss_pred HHHHHHhhhhhHHHHHHHHhcchhhcCCCEEEEcCCCccHHHHHHHHhC-cceEEEEechH-HHHHHHHHHHhcC----c
Confidence 4444444444456677777666567789999999999999999999863 67999999965 5599888775444 2
Q ss_pred CCcEEEEEcccccc-ccCCCeeEEEEcCCCCCCCCCCCCcHHHH----HHHHhhccCCcEEE
Q 035593 131 PDRLFVYVGNALKA-SLKDGFSGILVDLFSKGSLLSELEDPNTW----EKLRQCLRKGGRIM 187 (269)
Q Consensus 131 ~~rv~~~~~D~~~~-~~~~~yD~I~~d~~~~~~~~~~l~~~e~~----~~~~~~L~pgG~l~ 187 (269)
...++++.+...+. -+.++.|+|++.-.. ..|.-+..+ -.=-+.|+|||.+.
T Consensus 108 ~~ii~vi~gkvEdi~LP~eKVDiIvSEWMG-----y~Ll~EsMldsVl~ARdkwL~~~G~i~ 164 (346)
T KOG1499|consen 108 EDVITVIKGKVEDIELPVEKVDIIVSEWMG-----YFLLYESMLDSVLYARDKWLKEGGLIY 164 (346)
T ss_pred cceEEEeecceEEEecCccceeEEeehhhh-----HHHHHhhhhhhhhhhhhhccCCCceEc
Confidence 45799999999998 345899999975332 222222222 22337799999875
No 177
>TIGR00755 ksgA dimethyladenosine transferase. Alternate name: S-adenosylmethionine--6-N',N'-adenosyl (rRNA) dimethyltransferase
Probab=98.70 E-value=2e-07 Score=81.05 Aligned_cols=96 Identities=23% Similarity=0.341 Sum_probs=69.2
Q ss_pred HHHHhcCCCCCCCCcEEEEcCcccHHHHHHHHHCCCceEEEEECChHHHHHHHHhcCccccccCCCCcEEEEEccccccc
Q 035593 66 FDAFATLPPILPPGPIGILGFGAGSAARLILDLYPEAVIHGWELDPSVIKVAREFFALEKLEKSYPDRLFVYVGNALKAS 145 (269)
Q Consensus 66 ~~~~~~~~~l~~~~~VL~iG~G~G~~~~~l~~~~p~~~v~~vEidp~~~~~a~~~~~~~~~~~~~~~rv~~~~~D~~~~~ 145 (269)
.+.++....+.+..+|||||||+|.++..++++. .+++++|+|+.+++.+++.+.. .++++++.+|+..+.
T Consensus 18 ~~~i~~~~~~~~~~~VLEiG~G~G~lt~~L~~~~--~~v~~iE~d~~~~~~l~~~~~~-------~~~v~v~~~D~~~~~ 88 (253)
T TIGR00755 18 IQKIVEAANVLEGDVVLEIGPGLGALTEPLLKRA--KKVTAIEIDPRLAEILRKLLSL-------YERLEVIEGDALKVD 88 (253)
T ss_pred HHHHHHhcCCCCcCEEEEeCCCCCHHHHHHHHhC--CcEEEEECCHHHHHHHHHHhCc-------CCcEEEEECchhcCC
Confidence 3444433344567899999999999999999865 3699999999999999988742 357999999998873
Q ss_pred cCCCee---EEEEcCCCCCCCCCCCCcHHHHHHHHh
Q 035593 146 LKDGFS---GILVDLFSKGSLLSELEDPNTWEKLRQ 178 (269)
Q Consensus 146 ~~~~yD---~I~~d~~~~~~~~~~l~~~e~~~~~~~ 178 (269)
.. .|| +|+.+++ .+. +.+++..+..
T Consensus 89 ~~-~~d~~~~vvsNlP------y~i-~~~il~~ll~ 116 (253)
T TIGR00755 89 LP-DFPKQLKVVSNLP------YNI-SSPLIFKLLE 116 (253)
T ss_pred hh-HcCCcceEEEcCC------hhh-HHHHHHHHhc
Confidence 22 456 7776532 222 3455555554
No 178
>KOG2915 consensus tRNA(1-methyladenosine) methyltransferase, subunit GCD14 [Translation, ribosomal structure and biogenesis]
Probab=98.70 E-value=3.8e-07 Score=78.24 Aligned_cols=146 Identities=16% Similarity=0.183 Sum_probs=105.1
Q ss_pred CCCCCCCcEEEEcCcccHHHHHHHHHC-CCceEEEEECChHHHHHHHHhcCccccccCCCCcEEEEEcccccc---ccCC
Q 035593 73 PPILPPGPIGILGFGAGSAARLILDLY-PEAVIHGWELDPSVIKVAREFFALEKLEKSYPDRLFVYVGNALKA---SLKD 148 (269)
Q Consensus 73 ~~l~~~~~VL~iG~G~G~~~~~l~~~~-p~~~v~~vEidp~~~~~a~~~~~~~~~~~~~~~rv~~~~~D~~~~---~~~~ 148 (269)
..+.|...||+-|.|+|+++.++++.. |-.++...|....-.+.|++.|....+ ++++++++.|.... ....
T Consensus 101 L~i~PGsvV~EsGTGSGSlShaiaraV~ptGhl~tfefH~~Ra~ka~eeFr~hgi----~~~vt~~hrDVc~~GF~~ks~ 176 (314)
T KOG2915|consen 101 LEIRPGSVVLESGTGSGSLSHAIARAVAPTGHLYTFEFHETRAEKALEEFREHGI----GDNVTVTHRDVCGSGFLIKSL 176 (314)
T ss_pred hcCCCCCEEEecCCCcchHHHHHHHhhCcCcceEEEEecHHHHHHHHHHHHHhCC----CcceEEEEeecccCCcccccc
Confidence 346689999999999999999999865 678999999999999999999965543 47899999998765 3467
Q ss_pred CeeEEEEcCCCCCCCCCCCCcHHHHHHHHhhccCCcEEEEEecCCCccccccccchhHHHHHHHHHHHH-HhcCceEEEE
Q 035593 149 GFSGILVDLFSKGSLLSELEDPNTWEKLRQCLRKGGRIMVNVGGSCVEAEDSRRDGKVVMEATLKAMHK-VFGKKLYVLS 227 (269)
Q Consensus 149 ~yD~I~~d~~~~~~~~~~l~~~e~~~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~F~~~v~~~~ 227 (269)
.+|+|++|+..++...| .++.+||.+|.-++++ ++|- .+.++..+.|++ -|- .+..++
T Consensus 177 ~aDaVFLDlPaPw~AiP---------ha~~~lk~~g~r~csF-SPCI----------EQvqrtce~l~~~gf~-~i~~vE 235 (314)
T KOG2915|consen 177 KADAVFLDLPAPWEAIP---------HAAKILKDEGGRLCSF-SPCI----------EQVQRTCEALRSLGFI-EIETVE 235 (314)
T ss_pred ccceEEEcCCChhhhhh---------hhHHHhhhcCceEEec-cHHH----------HHHHHHHHHHHhCCCc-eEEEEE
Confidence 89999999987753333 3445788887654544 4652 346667777776 363 566665
Q ss_pred cCC-CCceEEEEecCCCC
Q 035593 228 LGN-RKDDSLIALTGELP 244 (269)
Q Consensus 228 ~~~-~~n~v~~~~~~~~~ 244 (269)
+-. ..|. +...+.+..
T Consensus 236 v~~~qk~~-V~~~~~~~~ 252 (314)
T KOG2915|consen 236 VLLVQKNG-VKTVKLALE 252 (314)
T ss_pred eehhhhhc-eeeeccchh
Confidence 443 3333 444444443
No 179
>TIGR02143 trmA_only tRNA (uracil-5-)-methyltransferase. This family consists exclusively of proteins believed to act as tRNA (uracil-5-)-methyltransferase. All members of far are proteobacterial. The seed alignment was taken directly from pfam05958 in Pfam 12.0, but higher cutoffs are used to select only functionally equivalent proteins. Homologous proteins excluded by the higher cutoff scores of this model include other uracil methyltransferases, such as RumA, active on rRNA.
Probab=98.69 E-value=1.3e-07 Score=86.01 Aligned_cols=98 Identities=18% Similarity=0.167 Sum_probs=75.0
Q ss_pred CCcEEEEcCcccHHHHHHHHHCCCceEEEEECChHHHHHHHHhcCccccccCCCCcEEEEEcccccc-cc----------
Q 035593 78 PGPIGILGFGAGSAARLILDLYPEAVIHGWELDPSVIKVAREFFALEKLEKSYPDRLFVYVGNALKA-SL---------- 146 (269)
Q Consensus 78 ~~~VL~iG~G~G~~~~~l~~~~p~~~v~~vEidp~~~~~a~~~~~~~~~~~~~~~rv~~~~~D~~~~-~~---------- 146 (269)
+.+|||+|||+|.++..+++.. .+|++||+++++++.|++++..+. -.+++++.+|+.++ ..
T Consensus 198 ~~~vlDl~~G~G~~sl~la~~~--~~v~~vE~~~~av~~a~~n~~~~~-----~~~v~~~~~d~~~~~~~~~~~~~~~~~ 270 (353)
T TIGR02143 198 KGDLLELYCGNGNFSLALAQNF--RRVLATEIAKPSVNAAQYNIAANN-----IDNVQIIRMSAEEFTQAMNGVREFRRL 270 (353)
T ss_pred CCcEEEEeccccHHHHHHHHhC--CEEEEEECCHHHHHHHHHHHHHcC-----CCcEEEEEcCHHHHHHHHhhccccccc
Confidence 3579999999999999888854 489999999999999999886543 24699999999886 21
Q ss_pred C------CCeeEEEEcCCCCCCCCCCCCcHHHHHHHHhhccCCcEEEEEec
Q 035593 147 K------DGFSGILVDLFSKGSLLSELEDPNTWEKLRQCLRKGGRIMVNVG 191 (269)
Q Consensus 147 ~------~~yD~I~~d~~~~~~~~~~l~~~e~~~~~~~~L~pgG~l~~~~~ 191 (269)
. .+||+|++|.+... ...++++.+.+ |++++.+.+.
T Consensus 271 ~~~~~~~~~~d~v~lDPPR~G------~~~~~l~~l~~---~~~ivYvsC~ 312 (353)
T TIGR02143 271 KGIDLKSYNCSTIFVDPPRAG------LDPDTCKLVQA---YERILYISCN 312 (353)
T ss_pred cccccccCCCCEEEECCCCCC------CcHHHHHHHHc---CCcEEEEEcC
Confidence 1 24899999976432 13566666654 7888888774
No 180
>PF03291 Pox_MCEL: mRNA capping enzyme; InterPro: IPR004971 This is a family of viral mRNA capping enzymes. The enzyme catalyses the first two reactions in the mRNA cap formation pathway. It is a heterodimer consisting of a large and small subunit. This entry is the large subunit. ; GO: 0006370 mRNA capping; PDB: 3EPP_A 3BGV_C 2VDW_C 1RI5_A 1RI3_A 1RI1_A 1Z3C_A 1RI2_A 2HV9_A 1RI4_A.
Probab=98.69 E-value=4.8e-08 Score=87.89 Aligned_cols=138 Identities=16% Similarity=0.194 Sum_probs=84.2
Q ss_pred CCCcEEEEcCcccH-HHHHHHHHCCCceEEEEECChHHHHHHHHhcC-cccc----ccCCCCcEEEEEcccccc-----c
Q 035593 77 PPGPIGILGFGAGS-AARLILDLYPEAVIHGWELDPSVIKVAREFFA-LEKL----EKSYPDRLFVYVGNALKA-----S 145 (269)
Q Consensus 77 ~~~~VL~iG~G~G~-~~~~l~~~~p~~~v~~vEidp~~~~~a~~~~~-~~~~----~~~~~~rv~~~~~D~~~~-----~ 145 (269)
++.+|||||||-|. +.++... .-.+++++||+++.++.|+++.. +... .....-...++.+|...- .
T Consensus 62 ~~~~VLDl~CGkGGDL~Kw~~~--~i~~~vg~Dis~~si~ea~~Ry~~~~~~~~~~~~~~~f~a~f~~~D~f~~~l~~~~ 139 (331)
T PF03291_consen 62 PGLTVLDLCCGKGGDLQKWQKA--KIKHYVGIDISEESIEEARERYKQLKKRNNSKQYRFDFIAEFIAADCFSESLREKL 139 (331)
T ss_dssp TT-EEEEET-TTTTTHHHHHHT--T-SEEEEEES-HHHHHHHHHHHHHHHTSTT-HTSEECCEEEEEESTTCCSHHHCTS
T ss_pred CCCeEEEecCCCchhHHHHHhc--CCCEEEEEeCCHHHHHHHHHHHHHhccccccccccccchhheeccccccchhhhhc
Confidence 67899999999555 5555443 45699999999999999998871 1100 000123577888988753 1
Q ss_pred c--CCCeeEEEEcCCCCCCCCCCCCcHHHHHHHHhhccCCcEEEEEecCCCccccccccchhHHHHHHHHHHHH------
Q 035593 146 L--KDGFSGILVDLFSKGSLLSELEDPNTWEKLRQCLRKGGRIMVNVGGSCVEAEDSRRDGKVVMEATLKAMHK------ 217 (269)
Q Consensus 146 ~--~~~yD~I~~d~~~~~~~~~~l~~~e~~~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~------ 217 (269)
. ..+||+|-+-..-|-.....-..+.+++.+.++|+|||+++..+.+. . .++..|++
T Consensus 140 ~~~~~~FDvVScQFalHY~Fese~~ar~~l~Nvs~~Lk~GG~FIgT~~d~-----------~----~i~~~l~~~~~~~~ 204 (331)
T PF03291_consen 140 PPRSRKFDVVSCQFALHYAFESEEKARQFLKNVSSLLKPGGYFIGTTPDS-----------D----EIVKRLREKKSNSE 204 (331)
T ss_dssp SSTTS-EEEEEEES-GGGGGSSHHHHHHHHHHHHHTEEEEEEEEEEEE-H-----------H----HHHCCHHC-EEECC
T ss_pred cccCCCcceeehHHHHHHhcCCHHHHHHHHHHHHHhcCCCCEEEEEecCH-----------H----HHHHHHHhhccccc
Confidence 2 35999997643222111111122469999999999999999988543 2 23343443
Q ss_pred --HhcCceEEEEcCCC
Q 035593 218 --VFGKKLYVLSLGNR 231 (269)
Q Consensus 218 --~F~~~v~~~~~~~~ 231 (269)
.|++.++.+....+
T Consensus 205 ~~~~gN~~y~I~f~~~ 220 (331)
T PF03291_consen 205 KKKFGNSVYSIEFDSD 220 (331)
T ss_dssp CSCSETSSEEEEESCC
T ss_pred ccccCCccEEEEeccc
Confidence 46777777766555
No 181
>PRK05031 tRNA (uracil-5-)-methyltransferase; Validated
Probab=98.67 E-value=1.6e-07 Score=85.86 Aligned_cols=97 Identities=18% Similarity=0.142 Sum_probs=74.4
Q ss_pred CcEEEEcCcccHHHHHHHHHCCCceEEEEECChHHHHHHHHhcCccccccCCCCcEEEEEcccccc-cc-----------
Q 035593 79 GPIGILGFGAGSAARLILDLYPEAVIHGWELDPSVIKVAREFFALEKLEKSYPDRLFVYVGNALKA-SL----------- 146 (269)
Q Consensus 79 ~~VL~iG~G~G~~~~~l~~~~p~~~v~~vEidp~~~~~a~~~~~~~~~~~~~~~rv~~~~~D~~~~-~~----------- 146 (269)
.+|||++||+|.++..+++.. .+|++||+++.+++.|+++...+. -.+++++.+|+.++ ..
T Consensus 208 ~~vLDl~~G~G~~sl~la~~~--~~v~~vE~~~~ai~~a~~N~~~~~-----~~~v~~~~~d~~~~l~~~~~~~~~~~~~ 280 (362)
T PRK05031 208 GDLLELYCGNGNFTLALARNF--RRVLATEISKPSVAAAQYNIAANG-----IDNVQIIRMSAEEFTQAMNGVREFNRLK 280 (362)
T ss_pred CeEEEEeccccHHHHHHHhhC--CEEEEEECCHHHHHHHHHHHHHhC-----CCcEEEEECCHHHHHHHHhhcccccccc
Confidence 579999999999999888753 489999999999999999875443 24799999999876 11
Q ss_pred -----CCCeeEEEEcCCCCCCCCCCCCcHHHHHHHHhhccCCcEEEEEec
Q 035593 147 -----KDGFSGILVDLFSKGSLLSELEDPNTWEKLRQCLRKGGRIMVNVG 191 (269)
Q Consensus 147 -----~~~yD~I~~d~~~~~~~~~~l~~~e~~~~~~~~L~pgG~l~~~~~ 191 (269)
..+||+|++|.+-.. ...+.++.+.+ +++++.+.+.
T Consensus 281 ~~~~~~~~~D~v~lDPPR~G------~~~~~l~~l~~---~~~ivyvSC~ 321 (362)
T PRK05031 281 GIDLKSYNFSTIFVDPPRAG------LDDETLKLVQA---YERILYISCN 321 (362)
T ss_pred cccccCCCCCEEEECCCCCC------CcHHHHHHHHc---cCCEEEEEeC
Confidence 125999999976421 24566666654 6788777773
No 182
>TIGR02081 metW methionine biosynthesis protein MetW. This protein is found alongside MetX, of the enzyme that acylates homoserine as a first step toward methionine biosynthesis, in many species. It appears to act in methionine biosynthesis but is not fully characterized.
Probab=98.67 E-value=1.2e-07 Score=79.07 Aligned_cols=89 Identities=16% Similarity=0.143 Sum_probs=65.8
Q ss_pred CCCCcEEEEcCcccHHHHHHHHHCCCceEEEEECChHHHHHHHHhcCccccccCCCCcEEEEEcccccc---ccCCCeeE
Q 035593 76 LPPGPIGILGFGAGSAARLILDLYPEAVIHGWELDPSVIKVAREFFALEKLEKSYPDRLFVYVGNALKA---SLKDGFSG 152 (269)
Q Consensus 76 ~~~~~VL~iG~G~G~~~~~l~~~~p~~~v~~vEidp~~~~~a~~~~~~~~~~~~~~~rv~~~~~D~~~~---~~~~~yD~ 152 (269)
.+..+|||||||+|.++..+++. .+..++++|+++++++.|++. +++++.+|+.+. ..+++||+
T Consensus 12 ~~~~~iLDiGcG~G~~~~~l~~~-~~~~~~giD~s~~~i~~a~~~------------~~~~~~~d~~~~l~~~~~~sfD~ 78 (194)
T TIGR02081 12 PPGSRVLDLGCGDGELLALLRDE-KQVRGYGIEIDQDGVLACVAR------------GVNVIQGDLDEGLEAFPDKSFDY 78 (194)
T ss_pred CCCCEEEEeCCCCCHHHHHHHhc-cCCcEEEEeCCHHHHHHHHHc------------CCeEEEEEhhhcccccCCCCcCE
Confidence 36779999999999999988764 467889999999999998652 367788888653 34568999
Q ss_pred EEEcCCCCCCCCCCC-CcHHHHHHHHhhccC
Q 035593 153 ILVDLFSKGSLLSEL-EDPNTWEKLRQCLRK 182 (269)
Q Consensus 153 I~~d~~~~~~~~~~l-~~~e~~~~~~~~L~p 182 (269)
|++...- .++ ....+++++.+.+++
T Consensus 79 Vi~~~~l-----~~~~d~~~~l~e~~r~~~~ 104 (194)
T TIGR02081 79 VILSQTL-----QATRNPEEILDEMLRVGRH 104 (194)
T ss_pred EEEhhHh-----HcCcCHHHHHHHHHHhCCe
Confidence 9985321 122 245778888776654
No 183
>PF01269 Fibrillarin: Fibrillarin; InterPro: IPR000692 Fibrillarin is a component of a nucleolar small nuclear ribonucleoprotein (SnRNP), functioning in vivo in ribosomal RNA processing [, ]. It is associated with U3, U8 and U13 small nuclear RNAs in mammals [] and is similar to the yeast NOP1 protein []. Fibrillarin has a well conserved sequence of around 320 amino acids, and contains 3 domains, an N-terminal Gly/Arg-rich region; a central domain resembling other RNA-binding proteins and containing an RNP-2-like consensus sequence; and a C-terminal alpha-helical domain. An evolutionarily related pre-rRNA processing protein, which lacks the Gly/Arg-rich domain, has been found in various archaebacteria.; GO: 0003723 RNA binding, 0008168 methyltransferase activity, 0006364 rRNA processing, 0008033 tRNA processing; PDB: 3PLA_E 3ID6_C 3ID5_B 1NT2_A 3NVK_J 2NNW_B 3NVM_B 3NMU_J 1PRY_A 1G8A_A ....
Probab=98.64 E-value=5.3e-06 Score=69.74 Aligned_cols=134 Identities=20% Similarity=0.346 Sum_probs=91.2
Q ss_pred CCCCCCcEEEEcCcccHHHHHHHHHCC-CceEEEEECChHH----HHHHHHhcCccccccCCCCcEEEEEcccccc----
Q 035593 74 PILPPGPIGILGFGAGSAARLILDLYP-EAVIHGWELDPSV----IKVAREFFALEKLEKSYPDRLFVYVGNALKA---- 144 (269)
Q Consensus 74 ~l~~~~~VL~iG~G~G~~~~~l~~~~p-~~~v~~vEidp~~----~~~a~~~~~~~~~~~~~~~rv~~~~~D~~~~---- 144 (269)
.+.+..+||-||.++|+...++..... ...|.+||.+|.. +++|+++ +++--+.+||+.-
T Consensus 70 ~ik~gskVLYLGAasGTTVSHvSDIvg~~G~VYaVEfs~r~~rdL~~la~~R-----------~NIiPIl~DAr~P~~Y~ 138 (229)
T PF01269_consen 70 PIKPGSKVLYLGAASGTTVSHVSDIVGPDGVVYAVEFSPRSMRDLLNLAKKR-----------PNIIPILEDARHPEKYR 138 (229)
T ss_dssp S--TT-EEEEETTTTSHHHHHHHHHHTTTSEEEEEESSHHHHHHHHHHHHHS-----------TTEEEEES-TTSGGGGT
T ss_pred CCCCCCEEEEecccCCCccchhhhccCCCCcEEEEEecchhHHHHHHHhccC-----------CceeeeeccCCChHHhh
Confidence 466789999999999999999998654 7899999999954 5566654 5688899999964
Q ss_pred ccCCCeeEEEEcCCCCCCCCCCCCcHHHHHHHHhhccCCcEEEEEecCCCccccccccchhHHHHHHHHHHHHH-hcCce
Q 035593 145 SLKDGFSGILVDLFSKGSLLSELEDPNTWEKLRQCLRKGGRIMVNVGGSCVEAEDSRRDGKVVMEATLKAMHKV-FGKKL 223 (269)
Q Consensus 145 ~~~~~yD~I~~d~~~~~~~~~~l~~~e~~~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-F~~~v 223 (269)
..-+..|+|+.|...+. ..+-+...+...||+||.+++.+-..+- +..+++...+.+..++|++. |. -.
T Consensus 139 ~lv~~VDvI~~DVaQp~------Qa~I~~~Na~~fLk~gG~~~i~iKa~si---D~t~~p~~vf~~e~~~L~~~~~~-~~ 208 (229)
T PF01269_consen 139 MLVEMVDVIFQDVAQPD------QARIAALNARHFLKPGGHLIISIKARSI---DSTADPEEVFAEEVKKLKEEGFK-PL 208 (229)
T ss_dssp TTS--EEEEEEE-SSTT------HHHHHHHHHHHHEEEEEEEEEEEEHHHH----SSSSHHHHHHHHHHHHHCTTCE-EE
T ss_pred cccccccEEEecCCChH------HHHHHHHHHHhhccCCcEEEEEEecCcc---cCcCCHHHHHHHHHHHHHHcCCC-hh
Confidence 34569999999976442 1345777778899999988876522111 11123466788888999984 74 34
Q ss_pred EEEEc
Q 035593 224 YVLSL 228 (269)
Q Consensus 224 ~~~~~ 228 (269)
-.+..
T Consensus 209 e~i~L 213 (229)
T PF01269_consen 209 EQITL 213 (229)
T ss_dssp EEEE-
T ss_pred eEecc
Confidence 44443
No 184
>KOG3191 consensus Predicted N6-DNA-methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=98.61 E-value=1.9e-06 Score=69.89 Aligned_cols=131 Identities=13% Similarity=0.160 Sum_probs=93.2
Q ss_pred CCcEEEEcCcccHHHHHHHHHC-CCceEEEEECChHHHHHHHHhcCccccccCCCCcEEEEEccccccccCCCeeEEEEc
Q 035593 78 PGPIGILGFGAGSAARLILDLY-PEAVIHGWELDPSVIKVAREFFALEKLEKSYPDRLFVYVGNALKASLKDGFSGILVD 156 (269)
Q Consensus 78 ~~~VL~iG~G~G~~~~~l~~~~-p~~~v~~vEidp~~~~~a~~~~~~~~~~~~~~~rv~~~~~D~~~~~~~~~yD~I~~d 156 (269)
++-+|+||||+|..+.+|++.. |+....+.||||..++..++-...+ .-++.+++.|...--.+++.|+++.+
T Consensus 44 ~~i~lEIG~GSGvvstfL~~~i~~~~~~latDiNp~A~~~Tl~TA~~n------~~~~~~V~tdl~~~l~~~~VDvLvfN 117 (209)
T KOG3191|consen 44 PEICLEIGCGSGVVSTFLASVIGPQALYLATDINPEALEATLETARCN------RVHIDVVRTDLLSGLRNESVDVLVFN 117 (209)
T ss_pred ceeEEEecCCcchHHHHHHHhcCCCceEEEecCCHHHHHHHHHHHHhc------CCccceeehhHHhhhccCCccEEEEC
Confidence 7789999999999999998864 5789999999999999877765433 35689999998877444999999976
Q ss_pred CCCCCCCCCCC-----------------CcHHHHHHHHhhccCCcEEEEEecCCCccccccccchhHHHHHHHHHHHHH-
Q 035593 157 LFSKGSLLSEL-----------------EDPNTWEKLRQCLRKGGRIMVNVGGSCVEAEDSRRDGKVVMEATLKAMHKV- 218 (269)
Q Consensus 157 ~~~~~~~~~~l-----------------~~~e~~~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~- 218 (269)
..--....... .+..++..+-..|.|.|++.++...... ..++++.++.-
T Consensus 118 PPYVpt~~~~i~~~~i~~a~aGG~~Gr~v~d~ll~~v~~iLSp~Gv~Ylv~~~~N~------------p~ei~k~l~~~g 185 (209)
T KOG3191|consen 118 PPYVPTSDEEIGDEGIASAWAGGKDGREVTDRLLPQVPDILSPRGVFYLVALRANK------------PKEILKILEKKG 185 (209)
T ss_pred CCcCcCCcccchhHHHHHHHhcCcchHHHHHHHHhhhhhhcCcCceEEeeehhhcC------------HHHHHHHHhhcc
Confidence 42211111111 1346778888999999999988865421 34666655553
Q ss_pred hcCceEEE
Q 035593 219 FGKKLYVL 226 (269)
Q Consensus 219 F~~~v~~~ 226 (269)
|...+.+.
T Consensus 186 ~~~~~~~~ 193 (209)
T KOG3191|consen 186 YGVRIAMQ 193 (209)
T ss_pred cceeEEEE
Confidence 54334443
No 185
>KOG1500 consensus Protein arginine N-methyltransferase CARM1 [Posttranslational modification, protein turnover, chaperones; Transcription]
Probab=98.60 E-value=3.2e-07 Score=80.89 Aligned_cols=103 Identities=17% Similarity=0.231 Sum_probs=80.3
Q ss_pred CCCcEEEEcCcccHHHHHHHHHCCCceEEEEECChHHHHHHHHhcCccccccCCCCcEEEEEccccccccCCCeeEEEEc
Q 035593 77 PPGPIGILGFGAGSAARLILDLYPEAVIHGWELDPSVIKVAREFFALEKLEKSYPDRLFVYVGNALKASLKDGFSGILVD 156 (269)
Q Consensus 77 ~~~~VL~iG~G~G~~~~~l~~~~p~~~v~~vEidp~~~~~a~~~~~~~~~~~~~~~rv~~~~~D~~~~~~~~~yD~I~~d 156 (269)
..+-|||+|||+|.+..+.+.. ...+|.+||.+ +|.+.|++...-+. ..+|+++|.|...+...+++.|+||+.
T Consensus 177 ~~kiVlDVGaGSGILS~FAaqA-GA~~vYAvEAS-~MAqyA~~Lv~~N~----~~~rItVI~GKiEdieLPEk~DviISE 250 (517)
T KOG1500|consen 177 QDKIVLDVGAGSGILSFFAAQA-GAKKVYAVEAS-EMAQYARKLVASNN----LADRITVIPGKIEDIELPEKVDVIISE 250 (517)
T ss_pred CCcEEEEecCCccHHHHHHHHh-CcceEEEEehh-HHHHHHHHHHhcCC----ccceEEEccCccccccCchhccEEEec
Confidence 4788999999999999998874 46699999995 59999998765332 257999999999999889999999975
Q ss_pred CCCCCCCCCCCCc---HHHHHHHHhhccCCcEEEEEe
Q 035593 157 LFSKGSLLSELED---PNTWEKLRQCLRKGGRIMVNV 190 (269)
Q Consensus 157 ~~~~~~~~~~l~~---~e~~~~~~~~L~pgG~l~~~~ 190 (269)
...- .|.. .|-|-.+++.|+|.|.+.-.+
T Consensus 251 PMG~-----mL~NERMLEsYl~Ark~l~P~GkMfPT~ 282 (517)
T KOG1500|consen 251 PMGY-----MLVNERMLESYLHARKWLKPNGKMFPTV 282 (517)
T ss_pred cchh-----hhhhHHHHHHHHHHHhhcCCCCcccCcc
Confidence 4321 2222 356667789999999876443
No 186
>COG1041 Predicted DNA modification methylase [DNA replication, recombination, and repair]
Probab=98.58 E-value=4.5e-07 Score=80.92 Aligned_cols=124 Identities=17% Similarity=0.075 Sum_probs=94.8
Q ss_pred ccchHHHHHhcCCCCCCCCcEEEEcCcccHHHHHHHHHCCCceEEEEECChHHHHHHHHhcCccccccCCCCcEEEEEc-
Q 035593 61 LTNTYFDAFATLPPILPPGPIGILGFGAGSAARLILDLYPEAVIHGWELDPSVIKVAREFFALEKLEKSYPDRLFVYVG- 139 (269)
Q Consensus 61 l~~~y~~~~~~~~~l~~~~~VL~iG~G~G~~~~~l~~~~p~~~v~~vEidp~~~~~a~~~~~~~~~~~~~~~rv~~~~~- 139 (269)
+...+.+.|+.+..+.++..|||==||||++..++.- -++++.+.|+|..|++-|+.++.... -....+...
T Consensus 181 ~~P~lAR~mVNLa~v~~G~~vlDPFcGTGgiLiEagl--~G~~viG~Did~~mv~gak~Nl~~y~-----i~~~~~~~~~ 253 (347)
T COG1041 181 MDPRLARAMVNLARVKRGELVLDPFCGTGGILIEAGL--MGARVIGSDIDERMVRGAKINLEYYG-----IEDYPVLKVL 253 (347)
T ss_pred cCHHHHHHHHHHhccccCCEeecCcCCccHHHHhhhh--cCceEeecchHHHHHhhhhhhhhhhC-----cCceeEEEec
Confidence 3445777887666677889999999999999998764 48999999999999999999886432 234656666
Q ss_pred ccccc-ccCCCeeEEEEcCCCCCCCC-C-C-C--CcHHHHHHHHhhccCCcEEEEEec
Q 035593 140 NALKA-SLKDGFSGILVDLFSKGSLL-S-E-L--EDPNTWEKLRQCLRKGGRIMVNVG 191 (269)
Q Consensus 140 D~~~~-~~~~~yD~I~~d~~~~~~~~-~-~-l--~~~e~~~~~~~~L~pgG~l~~~~~ 191 (269)
|+... ....++|.|+.|.+-..+.- . . + ...++++.+.+.|++||++++...
T Consensus 254 Da~~lpl~~~~vdaIatDPPYGrst~~~~~~l~~Ly~~~le~~~evLk~gG~~vf~~p 311 (347)
T COG1041 254 DATNLPLRDNSVDAIATDPPYGRSTKIKGEGLDELYEEALESASEVLKPGGRIVFAAP 311 (347)
T ss_pred ccccCCCCCCccceEEecCCCCcccccccccHHHHHHHHHHHHHHHhhcCcEEEEecC
Confidence 99887 34447999999976543221 1 1 1 135899999999999999999774
No 187
>PF03059 NAS: Nicotianamine synthase protein; InterPro: IPR004298 Nicotianamine synthase 2.5.1.43 from EC catalyzes the trimerization of S-adenosylmethionine to yield one molecule of nicotianamine. Nicotianamine has an important role in plant iron uptake mechanisms. Plants adopt two strategies (termed I and II) of iron acquisition. Strategy I is adopted by all higher plants except graminaceous plants, which adopt strategy II [, ]. In strategy I plants, the role of nicotianamine is not fully determined: possible roles include the formation of more stable complexes with ferrous than with ferric ion, which might serve as a sensor of the physiological status of iron within a plant, or which might be involved in the transport of iron []. In strategy II (graminaceous) plants, nicotianamine is the key intermediate (and nicotianamine synthase the key enzyme) in the synthesis of the mugineic family (the only known family in plants) of phytosiderophores. Phytosiderophores are iron chelators whose secretion by the roots is greatly increased in instances of iron deficiency []. The 3D structures of five example NAS from Methanothermobacter thermautotrophicus reveal the monomer to consist of a five-helical bundle N-terminal domain on top of a classic Rossmann fold C-terminal domain. The N-terminal domain is unique to the NAS family, whereas the C-terminal domain is homologous to the class I family of SAM-dependent methyltransferases. An active site is created at the interface of the two domains, at the rim of a large cavity that corresponds to the nucleotide binding site such as is found in other proteins adopting a Rossmann fold [].; GO: 0030410 nicotianamine synthase activity, 0030418 nicotianamine biosynthetic process; PDB: 3O31_B 3FPH_A 3FPJ_A 3FPE_B 3FPF_B 3FPG_B.
Probab=98.52 E-value=9e-07 Score=77.30 Aligned_cols=107 Identities=19% Similarity=0.311 Sum_probs=67.0
Q ss_pred CCcEEEEcCcccHHHHHHHH--HCCCceEEEEECChHHHHHHHHhcC-ccccccCCCCcEEEEEcccccc-ccCCCeeEE
Q 035593 78 PGPIGILGFGAGSAARLILD--LYPEAVIHGWELDPSVIKVAREFFA-LEKLEKSYPDRLFVYVGNALKA-SLKDGFSGI 153 (269)
Q Consensus 78 ~~~VL~iG~G~G~~~~~l~~--~~p~~~v~~vEidp~~~~~a~~~~~-~~~~~~~~~~rv~~~~~D~~~~-~~~~~yD~I 153 (269)
|++|+.||+|.=-++..+.. +.+++.|+++|+||+.++.|++-.. ..++ ..+++++.+|+.+. ..-..||+|
T Consensus 121 p~rVaFIGSGPLPlT~i~la~~~~~~~~v~~iD~d~~A~~~a~~lv~~~~~L----~~~m~f~~~d~~~~~~dl~~~DvV 196 (276)
T PF03059_consen 121 PSRVAFIGSGPLPLTSIVLAKQHGPGARVHNIDIDPEANELARRLVASDLGL----SKRMSFITADVLDVTYDLKEYDVV 196 (276)
T ss_dssp --EEEEE---SS-HHHHHHH--HTT--EEEEEESSHHHHHHHHHHHH---HH-----SSEEEEES-GGGG-GG----SEE
T ss_pred cceEEEEcCCCcchHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhcccc----cCCeEEEecchhccccccccCCEE
Confidence 67999999997766655553 3457899999999999999998764 2222 46899999999877 445799999
Q ss_pred EEcCCCCCCCCCCCCcHHHHHHHHhhccCCcEEEEEec
Q 035593 154 LVDLFSKGSLLSELEDPNTWEKLRQCLRKGGRIMVNVG 191 (269)
Q Consensus 154 ~~d~~~~~~~~~~l~~~e~~~~~~~~L~pgG~l~~~~~ 191 (269)
++.+.-... .-.-.+.++.+.+.++||..+++-..
T Consensus 197 ~lAalVg~~---~e~K~~Il~~l~~~m~~ga~l~~Rsa 231 (276)
T PF03059_consen 197 FLAALVGMD---AEPKEEILEHLAKHMAPGARLVVRSA 231 (276)
T ss_dssp EE-TT-S-------SHHHHHHHHHHHS-TTSEEEEEE-
T ss_pred EEhhhcccc---cchHHHHHHHHHhhCCCCcEEEEecc
Confidence 986543210 11247999999999999999988643
No 188
>PF01170 UPF0020: Putative RNA methylase family UPF0020; InterPro: IPR000241 This domain is probably a methylase. It is associated with the THUMP domain that also occurs with RNA modification domains [].; PDB: 3LDU_A 3LDG_A 3K0B_A 3V8V_B 3V97_A 3TLJ_A 3TM5_B 3TM4_A 3TMA_A.
Probab=98.51 E-value=3.8e-07 Score=75.17 Aligned_cols=122 Identities=17% Similarity=0.085 Sum_probs=81.5
Q ss_pred chHHHHHhcCCCCCCCCcEEEEcCcccHHHHHHHHHCCCce---------EEEEECChHHHHHHHHhcCccccccCCCCc
Q 035593 63 NTYFDAFATLPPILPPGPIGILGFGAGSAARLILDLYPEAV---------IHGWELDPSVIKVAREFFALEKLEKSYPDR 133 (269)
Q Consensus 63 ~~y~~~~~~~~~l~~~~~VL~iG~G~G~~~~~l~~~~p~~~---------v~~vEidp~~~~~a~~~~~~~~~~~~~~~r 133 (269)
......|+.+....+...+||--||+|++..+.+...++.. +.++|+|+++++.|++++.... ....
T Consensus 14 ~~lA~~ll~la~~~~~~~vlDP~CGsGtiliEaa~~~~~~~~~~~~~~~~~~g~Di~~~~v~~a~~N~~~ag----~~~~ 89 (179)
T PF01170_consen 14 PTLAAALLNLAGWRPGDVVLDPFCGSGTILIEAALMGANIPPLNDINELKIIGSDIDPKAVRGARENLKAAG----VEDY 89 (179)
T ss_dssp HHHHHHHHHHTT--TTS-EEETT-TTSHHHHHHHHHHTTTSTTTH-CH--EEEEESSHHHHHHHHHHHHHTT-----CGG
T ss_pred HHHHHHHHHHhCCCCCCEEeecCCCCCHHHHHHHHHhhCcccccccccccEEecCCCHHHHHHHHHHHHhcc----cCCc
Confidence 34455555444456788999999999999998877666655 9999999999999999874322 1346
Q ss_pred EEEEEccccccc-cCCCeeEEEEcCCCCCCCCC----CCCcHHHHHHHHhhccCCcEEEE
Q 035593 134 LFVYVGNALKAS-LKDGFSGILVDLFSKGSLLS----ELEDPNTWEKLRQCLRKGGRIMV 188 (269)
Q Consensus 134 v~~~~~D~~~~~-~~~~yD~I~~d~~~~~~~~~----~l~~~e~~~~~~~~L~pgG~l~~ 188 (269)
+.+...|+.++. ..+.+|+|++|.+-...... .-...++++.+++.|++..++++
T Consensus 90 i~~~~~D~~~l~~~~~~~d~IvtnPPyG~r~~~~~~~~~ly~~~~~~~~~~l~~~~v~l~ 149 (179)
T PF01170_consen 90 IDFIQWDARELPLPDGSVDAIVTNPPYGRRLGSKKDLEKLYRQFLRELKRVLKPRAVFLT 149 (179)
T ss_dssp EEEEE--GGGGGGTTSBSCEEEEE--STTSHCHHHHHHHHHHHHHHHHHCHSTTCEEEEE
T ss_pred eEEEecchhhcccccCCCCEEEECcchhhhccCHHHHHHHHHHHHHHHHHHCCCCEEEEE
Confidence 999999999984 67799999999754432221 11124678888888988334433
No 189
>PLN02232 ubiquinone biosynthesis methyltransferase
Probab=98.50 E-value=6.6e-07 Score=72.39 Aligned_cols=83 Identities=12% Similarity=0.139 Sum_probs=61.4
Q ss_pred EEEECChHHHHHHHHhcCccccccCCCCcEEEEEcccccc-ccCCCeeEEEEcCCCCCCCCCCCCcHHHHHHHHhhccCC
Q 035593 105 HGWELDPSVIKVAREFFALEKLEKSYPDRLFVYVGNALKA-SLKDGFSGILVDLFSKGSLLSELEDPNTWEKLRQCLRKG 183 (269)
Q Consensus 105 ~~vEidp~~~~~a~~~~~~~~~~~~~~~rv~~~~~D~~~~-~~~~~yD~I~~d~~~~~~~~~~l~~~e~~~~~~~~L~pg 183 (269)
+++|++++|++.|+++....... ...+++++++|+.+. ..+++||+|++...-. .. ....+++++++++||||
T Consensus 1 ~GvD~S~~ML~~A~~~~~~~~~~--~~~~i~~~~~d~~~lp~~~~~fD~v~~~~~l~-~~---~d~~~~l~ei~rvLkpG 74 (160)
T PLN02232 1 MGLDFSSEQLAVAATRQSLKARS--CYKCIEWIEGDAIDLPFDDCEFDAVTMGYGLR-NV---VDRLRAMKEMYRVLKPG 74 (160)
T ss_pred CeEcCCHHHHHHHHHhhhccccc--CCCceEEEEechhhCCCCCCCeeEEEecchhh-cC---CCHHHHHHHHHHHcCcC
Confidence 48999999999998765422100 124799999999988 5667899999743211 11 23468999999999999
Q ss_pred cEEEEEecCC
Q 035593 184 GRIMVNVGGS 193 (269)
Q Consensus 184 G~l~~~~~~~ 193 (269)
|.+++..++.
T Consensus 75 G~l~i~d~~~ 84 (160)
T PLN02232 75 SRVSILDFNK 84 (160)
T ss_pred eEEEEEECCC
Confidence 9999877654
No 190
>PRK00050 16S rRNA m(4)C1402 methyltranserfase; Provisional
Probab=98.50 E-value=5e-07 Score=79.89 Aligned_cols=76 Identities=29% Similarity=0.368 Sum_probs=64.2
Q ss_pred CCCCCcEEEEcCcccHHHHHHHHHCC-CceEEEEECChHHHHHHHHhcCccccccCCCCcEEEEEcccccc--ccC---C
Q 035593 75 ILPPGPIGILGFGAGSAARLILDLYP-EAVIHGWELDPSVIKVAREFFALEKLEKSYPDRLFVYVGNALKA--SLK---D 148 (269)
Q Consensus 75 l~~~~~VL~iG~G~G~~~~~l~~~~p-~~~v~~vEidp~~~~~a~~~~~~~~~~~~~~~rv~~~~~D~~~~--~~~---~ 148 (269)
..|...++|.+||.|..+..+++..+ +.+|+++|+||++++.|++.+.- ..|++++++|..++ ... .
T Consensus 17 ~~pg~~vlD~TlG~GGhS~~il~~~~~~g~VigiD~D~~al~~ak~~L~~-------~~ri~~i~~~f~~l~~~l~~~~~ 89 (296)
T PRK00050 17 IKPDGIYVDGTFGGGGHSRAILERLGPKGRLIAIDRDPDAIAAAKDRLKP-------FGRFTLVHGNFSNLKEVLAEGLG 89 (296)
T ss_pred CCCCCEEEEeCcCChHHHHHHHHhCCCCCEEEEEcCCHHHHHHHHHhhcc-------CCcEEEEeCCHHHHHHHHHcCCC
Confidence 35677999999999999999999886 78999999999999999987632 25899999999987 122 2
Q ss_pred CeeEEEEcC
Q 035593 149 GFSGILVDL 157 (269)
Q Consensus 149 ~yD~I~~d~ 157 (269)
++|.|++|+
T Consensus 90 ~vDgIl~DL 98 (296)
T PRK00050 90 KVDGILLDL 98 (296)
T ss_pred ccCEEEECC
Confidence 799999875
No 191
>PF01728 FtsJ: FtsJ-like methyltransferase; InterPro: IPR002877 RrmJ (FtsJ) is a well conserved heat shock protein present in prokaryotes, archaea, and eukaryotes. RrmJ is responsible for methylating 23 S rRNA at position U2552 in the aminoacyl (A)1-site of the ribosome []. U2552 is one of the five universally conserved A-loop residues and has been shown to be methylated at the ribose 2'-OH group in the majority of organisms investigated so far. This suggests that this modification plays an important role in the A-loop function. RrmJ recognises its methylation target only when the 23 S rRNA is present in 50 S ribosomal subunits. This suggests that the RrmJ-mediated methylation must occur late in the maturation process of the ribosome. This is in contrast to other known 23 S rRNA modifications that occur in earlier maturation steps. The 1.5 A crystal structure of RrmJ in complex with its cofactor S-adenosylmethionine revealed that RrmJ has a methyltransferase fold. The active site of RrmJ appears to be formed by a catalytic triad consisting of two lysine residues and the negatively charged aspartate residue. Another highly conserved glutamate residue that is present in the active site of RrmJ appears to play only a minor role in the methyltransfer reaction in vivo []. ; GO: 0003676 nucleic acid binding, 0008168 methyltransferase activity, 0032259 methylation; PDB: 3GCZ_A 2PLW_A 2NYU_A 2OXT_C 3EMD_A 3ELY_A 3ELW_A 3ELU_A 3ELD_A 3EMB_A ....
Probab=98.49 E-value=8.1e-07 Score=73.13 Aligned_cols=130 Identities=16% Similarity=0.182 Sum_probs=83.1
Q ss_pred cCCCCCC--CCcEEEEcCcccHHHHHHHHHC-CCceEEEEECChHHHHHHHHhcCccccccCCCCcEEEEEcccccc---
Q 035593 71 TLPPILP--PGPIGILGFGAGSAARLILDLY-PEAVIHGWELDPSVIKVAREFFALEKLEKSYPDRLFVYVGNALKA--- 144 (269)
Q Consensus 71 ~~~~l~~--~~~VL~iG~G~G~~~~~l~~~~-p~~~v~~vEidp~~~~~a~~~~~~~~~~~~~~~rv~~~~~D~~~~--- 144 (269)
.+..+.+ +.+||||||+.|+.+..++++. +..+|++||+.+. .+ .+.+..+.+|....
T Consensus 15 ~~~~~~~~~~~~vlDlG~aPGGws~~~~~~~~~~~~v~avDl~~~-----------~~-----~~~~~~i~~d~~~~~~~ 78 (181)
T PF01728_consen 15 KFKIFKPGKGFTVLDLGAAPGGWSQVLLQRGGPAGRVVAVDLGPM-----------DP-----LQNVSFIQGDITNPENI 78 (181)
T ss_dssp TTSSS-TTTTEEEEEET-TTSHHHHHHHTSTTTEEEEEEEESSST-----------GS------TTEEBTTGGGEEEEHS
T ss_pred HCCCCCcccccEEEEcCCcccceeeeeeecccccceEEEEecccc-----------cc-----ccceeeeecccchhhHH
Confidence 4443444 4899999999999999999865 4689999999885 11 23466666666542
Q ss_pred ------c--cCCCeeEEEEcCCCCCCCCC---CC----CcHHHHHHHHhhccCCcEEEEEecCCCccccccccchhHHHH
Q 035593 145 ------S--LKDGFSGILVDLFSKGSLLS---EL----EDPNTWEKLRQCLRKGGRIMVNVGGSCVEAEDSRRDGKVVME 209 (269)
Q Consensus 145 ------~--~~~~yD~I~~d~~~~~~~~~---~l----~~~e~~~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~~~~~~ 209 (269)
. ..+++|+|++|......-.. +. .....+..+.+.|+|||.+++-++... . . .
T Consensus 79 ~~i~~~~~~~~~~~dlv~~D~~~~~~g~~~~d~~~~~~l~~~~l~~a~~~L~~gG~~v~K~~~~~----------~-~-~ 146 (181)
T PF01728_consen 79 KDIRKLLPESGEKFDLVLSDMAPNVSGDRNIDEFISIRLILSQLLLALELLKPGGTFVIKVFKGP----------E-I-E 146 (181)
T ss_dssp HHGGGSHGTTTCSESEEEE-------SSHHSSHHHHHHHHHHHHHHHHHHHCTTEEEEEEESSST----------T-S-H
T ss_pred HhhhhhccccccCcceeccccccCCCCchhhHHHHHHHHHHHHHHHHHhhhcCCCEEEEEeccCc----------c-H-H
Confidence 1 23699999999833211110 11 112455566688999999999887642 1 2 3
Q ss_pred HHHHHHHHHhcCceEEEEcC
Q 035593 210 ATLKAMHKVFGKKLYVLSLG 229 (269)
Q Consensus 210 ~~~~~l~~~F~~~v~~~~~~ 229 (269)
.++..++..|. .+.+++..
T Consensus 147 ~~~~~l~~~F~-~v~~~Kp~ 165 (181)
T PF01728_consen 147 ELIYLLKRCFS-KVKIVKPP 165 (181)
T ss_dssp HHHHHHHHHHH-HEEEEE-T
T ss_pred HHHHHHHhCCe-EEEEEECc
Confidence 78888999995 78887644
No 192
>PF08003 Methyltransf_9: Protein of unknown function (DUF1698); InterPro: IPR010017 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This entry represents a set of bacterial AdoMet-dependent tRNA (mo5U34)-methyltransferases. These enzymes catalyse the conversion of 5-hydroxyuridine (ho5U) to 5-methoxyuridine (mo5U) at the wobble position (34) of tRNA []. The 5-methoxyuridine is subsequently converted to uridine-5-oxyacetic acid, a modified nucleoside that is apparently necessary for the efficient decoding of G-ending Pro, Ala, and Val codons in these organisms [].; GO: 0016300 tRNA (uracil) methyltransferase activity, 0002098 tRNA wobble uridine modification
Probab=98.47 E-value=1.4e-06 Score=76.51 Aligned_cols=101 Identities=14% Similarity=0.196 Sum_probs=70.2
Q ss_pred CCCcEEEEcCcccHHHHHHHHHCCCceEEEEECChHHHHH---HHHhcCccccccCCCCcEEEEEccccc-cccCCCeeE
Q 035593 77 PPGPIGILGFGAGSAARLILDLYPEAVIHGWELDPSVIKV---AREFFALEKLEKSYPDRLFVYVGNALK-ASLKDGFSG 152 (269)
Q Consensus 77 ~~~~VL~iG~G~G~~~~~l~~~~p~~~v~~vEidp~~~~~---a~~~~~~~~~~~~~~~rv~~~~~D~~~-~~~~~~yD~ 152 (269)
..++|||||||.|...-.++++ ....|+++|.++...-. ++++.+. +.++..+ ..+.+ ....+.||+
T Consensus 115 ~gk~VLDIGC~nGY~~frM~~~-GA~~ViGiDP~~lf~~QF~~i~~~lg~-------~~~~~~l-plgvE~Lp~~~~FDt 185 (315)
T PF08003_consen 115 KGKRVLDIGCNNGYYSFRMLGR-GAKSVIGIDPSPLFYLQFEAIKHFLGQ-------DPPVFEL-PLGVEDLPNLGAFDT 185 (315)
T ss_pred CCCEEEEecCCCcHHHHHHhhc-CCCEEEEECCChHHHHHHHHHHHHhCC-------CccEEEc-CcchhhccccCCcCE
Confidence 4889999999999999888874 34579999999987644 3444432 2233333 22322 333678999
Q ss_pred EEEcCCCCCCCCCCCC-cHHHHHHHHhhccCCcEEEEEec
Q 035593 153 ILVDLFSKGSLLSELE-DPNTWEKLRQCLRKGGRIMVNVG 191 (269)
Q Consensus 153 I~~d~~~~~~~~~~l~-~~e~~~~~~~~L~pgG~l~~~~~ 191 (269)
||+- ++..|.. ..+.++.+++.|++||.+++...
T Consensus 186 VF~M-----GVLYHrr~Pl~~L~~Lk~~L~~gGeLvLETl 220 (315)
T PF08003_consen 186 VFSM-----GVLYHRRSPLDHLKQLKDSLRPGGELVLETL 220 (315)
T ss_pred EEEe-----eehhccCCHHHHHHHHHHhhCCCCEEEEEEe
Confidence 9963 2333332 35899999999999999997543
No 193
>PF10294 Methyltransf_16: Putative methyltransferase; InterPro: IPR019410 There are a number of unidentified genes that have a high probability of coding for methyltransferases. They make up approximately 0.6-1.6% of the genes in the yeast, human, mouse, Drosophila melanogaster, Caenorhabditis elegans, Arabidopsis thaliana, and Escherichia coli genomes []. This entry represents putative nicotinamide N-methyltransferases involved in rDNA silencing and in lifespan determination. ; PDB: 3BZB_A.
Probab=98.46 E-value=7.6e-07 Score=72.96 Aligned_cols=109 Identities=17% Similarity=0.144 Sum_probs=68.3
Q ss_pred CCCCCcEEEEcCcccHHHHHHHHHCCCceEEEEECChHHHHHHHHhcCccccccCCCCcEEEEEcccccc-----ccCCC
Q 035593 75 ILPPGPIGILGFGAGSAARLILDLYPEAVIHGWELDPSVIKVAREFFALEKLEKSYPDRLFVYVGNALKA-----SLKDG 149 (269)
Q Consensus 75 l~~~~~VL~iG~G~G~~~~~l~~~~p~~~v~~vEidp~~~~~a~~~~~~~~~~~~~~~rv~~~~~D~~~~-----~~~~~ 149 (269)
..++++||+||||+|..+..+++..+..+|++-|.++ +++.++.+...+.. ....++++..-|-.+. ....+
T Consensus 43 ~~~~~~VLELGaG~Gl~gi~~a~~~~~~~Vv~TD~~~-~l~~l~~Ni~~N~~--~~~~~v~v~~L~Wg~~~~~~~~~~~~ 119 (173)
T PF10294_consen 43 LFRGKRVLELGAGTGLPGIAAAKLFGAARVVLTDYNE-VLELLRRNIELNGS--LLDGRVSVRPLDWGDELDSDLLEPHS 119 (173)
T ss_dssp GTTTSEEEETT-TTSHHHHHHHHT-T-SEEEEEE-S--HHHHHHHHHHTT----------EEEE--TTS-HHHHHHS-SS
T ss_pred hcCCceEEEECCccchhHHHHHhccCCceEEEeccch-hhHHHHHHHHhccc--cccccccCcEEEecCccccccccccc
Confidence 4568999999999999999998865678999999999 99999888754320 1145677777665432 23568
Q ss_pred eeEEEE-cCCCCCCCCCCCCcHHHHHHHHhhccCCcEEEEEec
Q 035593 150 FSGILV-DLFSKGSLLSELEDPNTWEKLRQCLRKGGRIMVNVG 191 (269)
Q Consensus 150 yD~I~~-d~~~~~~~~~~l~~~e~~~~~~~~L~pgG~l~~~~~ 191 (269)
||+|+. |+. +.+ -..+.+++.+.+.|+++|.+++...
T Consensus 120 ~D~IlasDv~----Y~~-~~~~~L~~tl~~ll~~~~~vl~~~~ 157 (173)
T PF10294_consen 120 FDVILASDVL----YDE-ELFEPLVRTLKRLLKPNGKVLLAYK 157 (173)
T ss_dssp BSEEEEES------S-G-GGHHHHHHHHHHHBTT-TTEEEEEE
T ss_pred CCEEEEeccc----chH-HHHHHHHHHHHHHhCCCCEEEEEeC
Confidence 999985 321 111 2246899999999999998655543
No 194
>PF02527 GidB: rRNA small subunit methyltransferase G; InterPro: IPR003682 This entry represents a rRNA small subunit methyltransferase G. Previously identified as a glucose-inhibited division protein B that appears to be present and in a single copy in all complete eubacterial genomes so far sequenced. Specifically methylates the N7 position of a guanosine in 16S rRNA [, , ].; GO: 0008649 rRNA methyltransferase activity, 0006364 rRNA processing, 0005737 cytoplasm; PDB: 1XDZ_A 3G88_A 3G8A_B 3G89_B 3G8B_B 1JSX_A.
Probab=98.46 E-value=1.7e-06 Score=71.45 Aligned_cols=112 Identities=21% Similarity=0.240 Sum_probs=83.3
Q ss_pred hHHHHHhcCCCCCCCC-cEEEEcCcccHHHHHHHHHCCCceEEEEECChHHHHHHH---HhcCccccccCCCCcEEEEEc
Q 035593 64 TYFDAFATLPPILPPG-PIGILGFGAGSAARLILDLYPEAVIHGWELDPSVIKVAR---EFFALEKLEKSYPDRLFVYVG 139 (269)
Q Consensus 64 ~y~~~~~~~~~l~~~~-~VL~iG~G~G~~~~~l~~~~p~~~v~~vEidp~~~~~a~---~~~~~~~~~~~~~~rv~~~~~ 139 (269)
.+.+.+..++.+.... +++|||.|+|.=+.-++-.+|+.+++.||....=+...+ +.+++ ++++++++
T Consensus 34 Hi~DSL~~~~~~~~~~~~~lDiGSGaGfPGipLaI~~p~~~~~LvEs~~KK~~FL~~~~~~L~L--------~nv~v~~~ 105 (184)
T PF02527_consen 34 HILDSLALLPFLPDFGKKVLDIGSGAGFPGIPLAIARPDLQVTLVESVGKKVAFLKEVVRELGL--------SNVEVING 105 (184)
T ss_dssp HHHHHHGGGGCS-CCCSEEEEETSTTTTTHHHHHHH-TTSEEEEEESSHHHHHHHHHHHHHHT---------SSEEEEES
T ss_pred HHHHHHHhhhhhccCCceEEecCCCCCChhHHHHHhCCCCcEEEEeCCchHHHHHHHHHHHhCC--------CCEEEEEe
Confidence 3445555555555433 899999999988877777789999999999987655444 44554 36999999
Q ss_pred cccccccCCCeeEEEEcCCCCCCCCCCCCcHHHHHHHHhhccCCcEEEEEec
Q 035593 140 NALKASLKDGFSGILVDLFSKGSLLSELEDPNTWEKLRQCLRKGGRIMVNVG 191 (269)
Q Consensus 140 D~~~~~~~~~yD~I~~d~~~~~~~~~~l~~~e~~~~~~~~L~pgG~l~~~~~ 191 (269)
.+.+.....+||+|++=++.+ ...+++-+...|++||.+++.-.
T Consensus 106 R~E~~~~~~~fd~v~aRAv~~--------l~~l~~~~~~~l~~~G~~l~~KG 149 (184)
T PF02527_consen 106 RAEEPEYRESFDVVTARAVAP--------LDKLLELARPLLKPGGRLLAYKG 149 (184)
T ss_dssp -HHHTTTTT-EEEEEEESSSS--------HHHHHHHHGGGEEEEEEEEEEES
T ss_pred eecccccCCCccEEEeehhcC--------HHHHHHHHHHhcCCCCEEEEEcC
Confidence 998855678999999877654 36899999999999999988664
No 195
>KOG2361 consensus Predicted methyltransferase [General function prediction only]
Probab=98.44 E-value=4.7e-07 Score=76.53 Aligned_cols=109 Identities=17% Similarity=0.266 Sum_probs=80.9
Q ss_pred CCcEEEEcCcccHHHHHHHHHCCC--ceEEEEECChHHHHHHHHhcCccccccCCCCcEEEEEcccccc-----ccCCCe
Q 035593 78 PGPIGILGFGAGSAARLILDLYPE--AVIHGWELDPSVIKVAREFFALEKLEKSYPDRLFVYVGNALKA-----SLKDGF 150 (269)
Q Consensus 78 ~~~VL~iG~G~G~~~~~l~~~~p~--~~v~~vEidp~~~~~a~~~~~~~~~~~~~~~rv~~~~~D~~~~-----~~~~~y 150 (269)
+.+||+||||.|...--+++..|+ ..|.++|.+|..+++.+++-+..+ .++...+.|...- ...+..
T Consensus 72 ~~~ilEvGCGvGNtvfPll~~~~n~~l~v~acDfsp~Ai~~vk~~~~~~e------~~~~afv~Dlt~~~~~~~~~~~sv 145 (264)
T KOG2361|consen 72 AETILEVGCGVGNTVFPLLKTSPNNRLKVYACDFSPRAIELVKKSSGYDE------SRVEAFVWDLTSPSLKEPPEEGSV 145 (264)
T ss_pred hhhheeeccCCCcccchhhhcCCCCCeEEEEcCCChHHHHHHHhccccch------hhhcccceeccchhccCCCCcCcc
Confidence 448999999999999999987776 899999999999999999876542 4566666665432 346788
Q ss_pred eEEEEcCCCCCCCCCCCCcHHHHHHHHhhccCCcEEEEEecCCC
Q 035593 151 SGILVDLFSKGSLLSELEDPNTWEKLRQCLRKGGRIMVNVGGSC 194 (269)
Q Consensus 151 D~I~~d~~~~~~~~~~l~~~e~~~~~~~~L~pgG~l~~~~~~~~ 194 (269)
|.|.+-..-. .+++. .....+..+.+.|||||.+++--++..
T Consensus 146 D~it~IFvLS-Ai~pe-k~~~a~~nl~~llKPGG~llfrDYg~~ 187 (264)
T KOG2361|consen 146 DIITLIFVLS-AIHPE-KMQSVIKNLRTLLKPGGSLLFRDYGRY 187 (264)
T ss_pred ceEEEEEEEe-ccChH-HHHHHHHHHHHHhCCCcEEEEeecccc
Confidence 9886431111 22221 135789999999999999999877653
No 196
>KOG1975 consensus mRNA cap methyltransferase [RNA processing and modification]
Probab=98.44 E-value=6.8e-07 Score=78.46 Aligned_cols=135 Identities=16% Similarity=0.206 Sum_probs=87.8
Q ss_pred CCCcEEEEcCcccHHHHHHHHHCCCceEEEEECChHHHHHHHHhcC-ccccccCCCCcEEEEEcccccc-------ccCC
Q 035593 77 PPGPIGILGFGAGSAARLILDLYPEAVIHGWELDPSVIKVAREFFA-LEKLEKSYPDRLFVYVGNALKA-------SLKD 148 (269)
Q Consensus 77 ~~~~VL~iG~G~G~~~~~l~~~~p~~~v~~vEidp~~~~~a~~~~~-~~~~~~~~~~rv~~~~~D~~~~-------~~~~ 148 (269)
+...++++|||-|.-++-+.+. .-..++++||.+..++.|+++.. ....-.-..-.+.++.+|.... ..+.
T Consensus 117 ~~~~~~~LgCGKGGDLlKw~kA-gI~~~igiDIAevSI~qa~~RYrdm~~r~~~~~f~a~f~~~Dc~~~~l~d~~e~~dp 195 (389)
T KOG1975|consen 117 RGDDVLDLGCGKGGDLLKWDKA-GIGEYIGIDIAEVSINQARKRYRDMKNRFKKFIFTAVFIAADCFKERLMDLLEFKDP 195 (389)
T ss_pred cccccceeccCCcccHhHhhhh-cccceEeeehhhccHHHHHHHHHHHHhhhhcccceeEEEEeccchhHHHHhccCCCC
Confidence 5678999999977776665552 34589999999999999998753 1100000112478999998754 1344
Q ss_pred CeeEEEEcCCCCCCCCCCCCcHHHHHHHHhhccCCcEEEEEecCCCccccccccchhHHHHHHHHHHHH----HhcCceE
Q 035593 149 GFSGILVDLFSKGSLLSELEDPNTWEKLRQCLRKGGRIMVNVGGSCVEAEDSRRDGKVVMEATLKAMHK----VFGKKLY 224 (269)
Q Consensus 149 ~yD~I~~d~~~~~~~~~~l~~~e~~~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~----~F~~~v~ 224 (269)
+||+|-+-..-+-+....-...-+++.+.++|+|||+++-.+.+. + .++..|++ .|++.+|
T Consensus 196 ~fDivScQF~~HYaFetee~ar~~l~Nva~~LkpGG~FIgTiPds-----------d----~Ii~rlr~~e~~~~gNdiy 260 (389)
T KOG1975|consen 196 RFDIVSCQFAFHYAFETEESARIALRNVAKCLKPGGVFIGTIPDS-----------D----VIIKRLRAGEVERFGNDIY 260 (389)
T ss_pred CcceeeeeeeEeeeeccHHHHHHHHHHHHhhcCCCcEEEEecCcH-----------H----HHHHHHHhccchhhcceee
Confidence 599996542222111111122468999999999999999877433 2 34455554 4888887
Q ss_pred EEE
Q 035593 225 VLS 227 (269)
Q Consensus 225 ~~~ 227 (269)
++.
T Consensus 261 kv~ 263 (389)
T KOG1975|consen 261 KVT 263 (389)
T ss_pred eEe
Confidence 764
No 197
>COG0742 N6-adenine-specific methylase [DNA replication, recombination, and repair]
Probab=98.42 E-value=1.8e-06 Score=70.90 Aligned_cols=109 Identities=20% Similarity=0.118 Sum_probs=81.0
Q ss_pred CCCCcEEEEcCcccHHHHHHHHHCCCceEEEEECChHHHHHHHHhcCccccccCCCCcEEEEEcccccc--ccCC--Cee
Q 035593 76 LPPGPIGILGFGAGSAARLILDLYPEAVIHGWELDPSVIKVAREFFALEKLEKSYPDRLFVYVGNALKA--SLKD--GFS 151 (269)
Q Consensus 76 ~~~~~VL~iG~G~G~~~~~l~~~~p~~~v~~vEidp~~~~~a~~~~~~~~~~~~~~~rv~~~~~D~~~~--~~~~--~yD 151 (269)
....++||+=+|+|+++.+.+.+ ...+++.||.|.....+.+++...-. ...+.+++..|+..+ .... .||
T Consensus 42 i~g~~~LDlFAGSGaLGlEAlSR-GA~~~~~vE~~~~a~~~l~~N~~~l~----~~~~~~~~~~da~~~L~~~~~~~~FD 116 (187)
T COG0742 42 IEGARVLDLFAGSGALGLEALSR-GAARVVFVEKDRKAVKILKENLKALG----LEGEARVLRNDALRALKQLGTREPFD 116 (187)
T ss_pred cCCCEEEEecCCccHhHHHHHhC-CCceEEEEecCHHHHHHHHHHHHHhC----CccceEEEeecHHHHHHhcCCCCccc
Confidence 46889999999999999999985 35699999999999999999874211 136899999999976 3333 499
Q ss_pred EEEEcCCCCCCCCCCCCc-HHHHHH--HHhhccCCcEEEEEecCC
Q 035593 152 GILVDLFSKGSLLSELED-PNTWEK--LRQCLRKGGRIMVNVGGS 193 (269)
Q Consensus 152 ~I~~d~~~~~~~~~~l~~-~e~~~~--~~~~L~pgG~l~~~~~~~ 193 (269)
+|++|.+-... +.. ...+.. -...|+|+|.+++.....
T Consensus 117 lVflDPPy~~~----l~~~~~~~~~~~~~~~L~~~~~iv~E~~~~ 157 (187)
T COG0742 117 LVFLDPPYAKG----LLDKELALLLLEENGWLKPGALIVVEHDKD 157 (187)
T ss_pred EEEeCCCCccc----hhhHHHHHHHHHhcCCcCCCcEEEEEeCCC
Confidence 99999654321 211 223333 346799999999977543
No 198
>COG0293 FtsJ 23S rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=98.39 E-value=1.1e-05 Score=67.27 Aligned_cols=125 Identities=17% Similarity=0.162 Sum_probs=90.8
Q ss_pred CCCCCCcEEEEcCcccHHHHHHHHHCC-CceEEEEECChHHHHHHHHhcCccccccCCCCcEEEEEcccccc--------
Q 035593 74 PILPPGPIGILGFGAGSAARLILDLYP-EAVIHGWELDPSVIKVAREFFALEKLEKSYPDRLFVYVGNALKA-------- 144 (269)
Q Consensus 74 ~l~~~~~VL~iG~G~G~~~~~l~~~~p-~~~v~~vEidp~~~~~a~~~~~~~~~~~~~~~rv~~~~~D~~~~-------- 144 (269)
.+.+...|+|||+..|+++..+++... +..|++||+.| ..+ -+.+.++++|...-
T Consensus 42 i~~~~~~ViDLGAAPGgWsQva~~~~~~~~~ivavDi~p-----------~~~-----~~~V~~iq~d~~~~~~~~~l~~ 105 (205)
T COG0293 42 LFKPGMVVVDLGAAPGGWSQVAAKKLGAGGKIVAVDILP-----------MKP-----IPGVIFLQGDITDEDTLEKLLE 105 (205)
T ss_pred eecCCCEEEEcCCCCCcHHHHHHHHhCCCCcEEEEECcc-----------ccc-----CCCceEEeeeccCccHHHHHHH
Confidence 456789999999999999999998764 55799999988 111 35699999999864
Q ss_pred -ccCCCeeEEEEcCCCCCCC---CCCCC----cHHHHHHHHhhccCCcEEEEEecCCCccccccccchhHHHHHHHHHHH
Q 035593 145 -SLKDGFSGILVDLFSKGSL---LSELE----DPNTWEKLRQCLRKGGRIMVNVGGSCVEAEDSRRDGKVVMEATLKAMH 216 (269)
Q Consensus 145 -~~~~~yD~I~~d~~~~~~~---~~~l~----~~e~~~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 216 (269)
....+.|+|++|+.....- ..|.. ....++-+...|+|||.+++-.+... ....++..++
T Consensus 106 ~l~~~~~DvV~sD~ap~~~g~~~~Dh~r~~~L~~~a~~~a~~vL~~~G~fv~K~fqg~------------~~~~~l~~~~ 173 (205)
T COG0293 106 ALGGAPVDVVLSDMAPNTSGNRSVDHARSMYLCELALEFALEVLKPGGSFVAKVFQGE------------DFEDLLKALR 173 (205)
T ss_pred HcCCCCcceEEecCCCCcCCCccccHHHHHHHHHHHHHHHHHeeCCCCeEEEEEEeCC------------CHHHHHHHHH
Confidence 1344579999998654221 11221 23566677789999999999776431 2567889999
Q ss_pred HHhcCceEEEE
Q 035593 217 KVFGKKLYVLS 227 (269)
Q Consensus 217 ~~F~~~v~~~~ 227 (269)
+.|. .+....
T Consensus 174 ~~F~-~v~~~K 183 (205)
T COG0293 174 RLFR-KVKIFK 183 (205)
T ss_pred Hhhc-eeEEec
Confidence 9996 565553
No 199
>COG2520 Predicted methyltransferase [General function prediction only]
Probab=98.38 E-value=2.4e-06 Score=76.77 Aligned_cols=106 Identities=15% Similarity=0.107 Sum_probs=89.6
Q ss_pred CCCCcEEEEcCcccHHHHHHHHHCCCceEEEEECChHHHHHHHHhcCccccccCCCCcEEEEEccccccccC-CCeeEEE
Q 035593 76 LPPGPIGILGFGAGSAARLILDLYPEAVIHGWELDPSVIKVAREFFALEKLEKSYPDRLFVYVGNALKASLK-DGFSGIL 154 (269)
Q Consensus 76 ~~~~~VL~iG~G~G~~~~~l~~~~p~~~v~~vEidp~~~~~a~~~~~~~~~~~~~~~rv~~~~~D~~~~~~~-~~yD~I~ 154 (269)
.++..|||.=+|-|.++..++++ ...+|+++||||..++..++++.++.+ ..+++.++||++++... ..+|-|+
T Consensus 187 ~~GE~V~DmFAGVGpfsi~~Ak~-g~~~V~A~diNP~A~~~L~eNi~LN~v----~~~v~~i~gD~rev~~~~~~aDrIi 261 (341)
T COG2520 187 KEGETVLDMFAGVGPFSIPIAKK-GRPKVYAIDINPDAVEYLKENIRLNKV----EGRVEPILGDAREVAPELGVADRII 261 (341)
T ss_pred cCCCEEEEccCCcccchhhhhhc-CCceEEEEecCHHHHHHHHHHHHhcCc----cceeeEEeccHHHhhhccccCCEEE
Confidence 45899999999999999999884 344599999999999999999988764 45699999999999433 8999999
Q ss_pred EcCCCCCCCCCCCCcHHHHHHHHhhccCCcEEEEEecCCC
Q 035593 155 VDLFSKGSLLSELEDPNTWEKLRQCLRKGGRIMVNVGGSC 194 (269)
Q Consensus 155 ~d~~~~~~~~~~l~~~e~~~~~~~~L~pgG~l~~~~~~~~ 194 (269)
+..+.. +.+|+..+.+.+++||++-+....+.
T Consensus 262 m~~p~~--------a~~fl~~A~~~~k~~g~iHyy~~~~e 293 (341)
T COG2520 262 MGLPKS--------AHEFLPLALELLKDGGIIHYYEFVPE 293 (341)
T ss_pred eCCCCc--------chhhHHHHHHHhhcCcEEEEEeccch
Confidence 876532 57899999999999999999887653
No 200
>PF09445 Methyltransf_15: RNA cap guanine-N2 methyltransferase; InterPro: IPR019012 RNA cap guanine-N2 methyltransferases such as Schizosaccharomyces pombe (Fission yeast) trimethylguanosine synthase (Tgs1) and Giardia lamblia (Giardia intestinalis) Tgs2, catalyse the methylation step(s) for the conversion of the 7-monomethylguanosine (m(7)G) caps of snRNAs and snoRNAs to a 2,2,7-trimethylguanosine (m(2,2,7)G) cap structure [, , ]. Trimethylguanosine synthase is specific for guanine, and N7 methylation must precede N2 methylation. This enzyme is required for pre-mRNA splicing, pre-rRNA processing and small ribosomal subunit synthesis. As such, this enzyme plays a role in transcriptional regulation. ; GO: 0008168 methyltransferase activity, 0001510 RNA methylation, 0009452 RNA capping; PDB: 3EGI_B 3GDH_A.
Probab=98.37 E-value=5.5e-07 Score=72.70 Aligned_cols=72 Identities=11% Similarity=0.094 Sum_probs=52.7
Q ss_pred cEEEEcCcccHHHHHHHHHCCCceEEEEECChHHHHHHHHhcCccccccCCCCcEEEEEcccccccc----CCCeeEEEE
Q 035593 80 PIGILGFGAGSAARLILDLYPEAVIHGWELDPSVIKVAREFFALEKLEKSYPDRLFVYVGNALKASL----KDGFSGILV 155 (269)
Q Consensus 80 ~VL~iG~G~G~~~~~l~~~~p~~~v~~vEidp~~~~~a~~~~~~~~~~~~~~~rv~~~~~D~~~~~~----~~~yD~I~~ 155 (269)
.|+|+.||.|..+.++++. ..+|++||+||..++.|+.+....+ ..++++++++|..+... ...+|+|++
T Consensus 2 ~vlD~fcG~GGNtIqFA~~--~~~Viaidid~~~~~~a~hNa~vYG----v~~~I~~i~gD~~~~~~~~~~~~~~D~vFl 75 (163)
T PF09445_consen 2 TVLDAFCGVGGNTIQFART--FDRVIAIDIDPERLECAKHNAEVYG----VADNIDFICGDFFELLKRLKSNKIFDVVFL 75 (163)
T ss_dssp EEEETT-TTSHHHHHHHHT--T-EEEEEES-HHHHHHHHHHHHHTT-----GGGEEEEES-HHHHGGGB------SEEEE
T ss_pred EEEEeccCcCHHHHHHHHh--CCeEEEEECCHHHHHHHHHHHHHcC----CCCcEEEEeCCHHHHHhhccccccccEEEE
Confidence 5899999999999999985 4589999999999999999875432 24689999999998721 122899998
Q ss_pred cC
Q 035593 156 DL 157 (269)
Q Consensus 156 d~ 157 (269)
++
T Consensus 76 SP 77 (163)
T PF09445_consen 76 SP 77 (163)
T ss_dssp --
T ss_pred CC
Confidence 75
No 201
>KOG0820 consensus Ribosomal RNA adenine dimethylase [RNA processing and modification]
Probab=98.36 E-value=4.6e-06 Score=71.73 Aligned_cols=85 Identities=21% Similarity=0.286 Sum_probs=67.5
Q ss_pred HHHhcCCCCCCCCcEEEEcCcccHHHHHHHHHCCCceEEEEECChHHHHHHHHhcC-ccccccCCCCcEEEEEccccccc
Q 035593 67 DAFATLPPILPPGPIGILGFGAGSAARLILDLYPEAVIHGWELDPSVIKVAREFFA-LEKLEKSYPDRLFVYVGNALKAS 145 (269)
Q Consensus 67 ~~~~~~~~l~~~~~VL~iG~G~G~~~~~l~~~~p~~~v~~vEidp~~~~~a~~~~~-~~~~~~~~~~rv~~~~~D~~~~~ 145 (269)
+.+..-..+.|+..||++|.|+|.++..|++ .+.+|+++|+||.|+....+++. .+. ..+++++++|....
T Consensus 48 ~~I~~ka~~k~tD~VLEvGPGTGnLT~~lLe--~~kkVvA~E~Dprmvael~krv~gtp~-----~~kLqV~~gD~lK~- 119 (315)
T KOG0820|consen 48 DQIVEKADLKPTDVVLEVGPGTGNLTVKLLE--AGKKVVAVEIDPRMVAELEKRVQGTPK-----SGKLQVLHGDFLKT- 119 (315)
T ss_pred HHHHhccCCCCCCEEEEeCCCCCHHHHHHHH--hcCeEEEEecCcHHHHHHHHHhcCCCc-----cceeeEEecccccC-
Confidence 3344444577899999999999999999998 47899999999999988888774 332 46899999998654
Q ss_pred cCCCeeEEEEcCCC
Q 035593 146 LKDGFSGILVDLFS 159 (269)
Q Consensus 146 ~~~~yD~I~~d~~~ 159 (269)
....||.++.+.+-
T Consensus 120 d~P~fd~cVsNlPy 133 (315)
T KOG0820|consen 120 DLPRFDGCVSNLPY 133 (315)
T ss_pred CCcccceeeccCCc
Confidence 33589999986543
No 202
>KOG1709 consensus Guanidinoacetate methyltransferase and related proteins [Amino acid transport and metabolism]
Probab=98.36 E-value=2.3e-06 Score=71.23 Aligned_cols=106 Identities=21% Similarity=0.225 Sum_probs=81.5
Q ss_pred CCCCcEEEEcCcccHHHHHHHHHCCCceEEEEECChHHHHHHHHhcCccccccCCCCcEEEEEcccccc---ccCCCeeE
Q 035593 76 LPPGPIGILGFGAGSAARLILDLYPEAVIHGWELDPSVIKVAREFFALEKLEKSYPDRLFVYVGNALKA---SLKDGFSG 152 (269)
Q Consensus 76 ~~~~~VL~iG~G~G~~~~~l~~~~p~~~v~~vEidp~~~~~a~~~~~~~~~~~~~~~rv~~~~~D~~~~---~~~~~yD~ 152 (269)
.+..+||.+|.|.|.+...+.++ |-.+=+.+|.+|+|.+..|++--. ...+|.+..+--.+. ..++.||-
T Consensus 100 tkggrvLnVGFGMgIidT~iQe~-~p~~H~IiE~hp~V~krmr~~gw~------ek~nViil~g~WeDvl~~L~d~~FDG 172 (271)
T KOG1709|consen 100 TKGGRVLNVGFGMGIIDTFIQEA-PPDEHWIIEAHPDVLKRMRDWGWR------EKENVIILEGRWEDVLNTLPDKHFDG 172 (271)
T ss_pred hCCceEEEeccchHHHHHHHhhc-CCcceEEEecCHHHHHHHHhcccc------cccceEEEecchHhhhccccccCcce
Confidence 46899999999999999999985 545667899999999998887421 145677777655554 45677999
Q ss_pred EEEcCCCCCCCCCCCCcHHHHHHHHhhccCCcEEEE-EecC
Q 035593 153 ILVDLFSKGSLLSELEDPNTWEKLRQCLRKGGRIMV-NVGG 192 (269)
Q Consensus 153 I~~d~~~~~~~~~~l~~~e~~~~~~~~L~pgG~l~~-~~~~ 192 (269)
|+.|.|+... -.+.+|++.+.+.|||+|++.+ |..+
T Consensus 173 I~yDTy~e~y----Edl~~~hqh~~rLLkP~gv~SyfNg~~ 209 (271)
T KOG1709|consen 173 IYYDTYSELY----EDLRHFHQHVVRLLKPEGVFSYFNGLG 209 (271)
T ss_pred eEeechhhHH----HHHHHHHHHHhhhcCCCceEEEecCcc
Confidence 9999886421 1246899999999999999975 5543
No 203
>COG4076 Predicted RNA methylase [General function prediction only]
Probab=98.35 E-value=9.7e-07 Score=71.92 Aligned_cols=100 Identities=16% Similarity=0.206 Sum_probs=78.2
Q ss_pred CCcEEEEcCcccHHHHHHHHHCCCceEEEEECChHHHHHHHHhcCccccccCCCCcEEEEEccccccccCCCeeEEEEcC
Q 035593 78 PGPIGILGFGAGSAARLILDLYPEAVIHGWELDPSVIKVAREFFALEKLEKSYPDRLFVYVGNALKASLKDGFSGILVDL 157 (269)
Q Consensus 78 ~~~VL~iG~G~G~~~~~l~~~~p~~~v~~vEidp~~~~~a~~~~~~~~~~~~~~~rv~~~~~D~~~~~~~~~yD~I~~d~ 157 (269)
...+.|+|.|+|.++...++. .-+|.++|.||...+.|++++..+. ..+++++.+|++++.. +..|+|++.+
T Consensus 33 ~d~~~DLGaGsGiLs~~Aa~~--A~rViAiE~dPk~a~~a~eN~~v~g-----~~n~evv~gDA~~y~f-e~ADvvicEm 104 (252)
T COG4076 33 EDTFADLGAGSGILSVVAAHA--AERVIAIEKDPKRARLAEENLHVPG-----DVNWEVVVGDARDYDF-ENADVVICEM 104 (252)
T ss_pred hhceeeccCCcchHHHHHHhh--hceEEEEecCcHHHHHhhhcCCCCC-----CcceEEEecccccccc-cccceeHHHH
Confidence 467999999999999888873 6699999999999999999987765 5789999999999844 6789998765
Q ss_pred CCCCCCCCCCCcHHHHHHHHhhccCCcEEE
Q 035593 158 FSKGSLLSELEDPNTWEKLRQCLRKGGRIM 187 (269)
Q Consensus 158 ~~~~~~~~~l~~~e~~~~~~~~L~pgG~l~ 187 (269)
-+..-.... ....++.+.+.|+.++.++
T Consensus 105 lDTaLi~E~--qVpV~n~vleFLr~d~tii 132 (252)
T COG4076 105 LDTALIEEK--QVPVINAVLEFLRYDPTII 132 (252)
T ss_pred hhHHhhccc--ccHHHHHHHHHhhcCCccc
Confidence 443211111 2456777777888888765
No 204
>PF13578 Methyltransf_24: Methyltransferase domain; PDB: 3SSO_A 3SSN_C 3SSM_D.
Probab=98.32 E-value=3e-07 Score=68.91 Aligned_cols=95 Identities=16% Similarity=0.110 Sum_probs=44.4
Q ss_pred EEEcCcccHHHHHHHHHCC-C--ceEEEEECChH---HHHHHHHhcCccccccCCCCcEEEEEcccccc--c-cCCCeeE
Q 035593 82 GILGFGAGSAARLILDLYP-E--AVIHGWELDPS---VIKVAREFFALEKLEKSYPDRLFVYVGNALKA--S-LKDGFSG 152 (269)
Q Consensus 82 L~iG~G~G~~~~~l~~~~p-~--~~v~~vEidp~---~~~~a~~~~~~~~~~~~~~~rv~~~~~D~~~~--~-~~~~yD~ 152 (269)
||||+..|..+..+++..+ + .++++||..+. .-+..++ .++ ..+++++.+|..+. . ..+++|+
T Consensus 1 lEiG~~~G~st~~l~~~~~~~~~~~~~~vD~~~~~~~~~~~~~~-~~~-------~~~~~~~~g~s~~~l~~~~~~~~dl 72 (106)
T PF13578_consen 1 LEIGTYSGYSTLWLASALRDNGRGKLYSVDPFPGDEQAQEIIKK-AGL-------SDRVEFIQGDSPDFLPSLPDGPIDL 72 (106)
T ss_dssp --------------------------EEEESS-------------GGG--------BTEEEEES-THHHHHHHHH--EEE
T ss_pred CccccccccccccccccccccccCCEEEEECCCcccccchhhhh-cCC-------CCeEEEEEcCcHHHHHHcCCCCEEE
Confidence 6899999999988887654 2 27999999994 4444333 122 35799999999876 2 2479999
Q ss_pred EEEcCCCCCCCCCCCCcHHHHHHHHhhccCCcEEEEE
Q 035593 153 ILVDLFSKGSLLSELEDPNTWEKLRQCLRKGGRIMVN 189 (269)
Q Consensus 153 I~~d~~~~~~~~~~l~~~e~~~~~~~~L~pgG~l~~~ 189 (269)
|++|..... -.....++.+..+|+|||+++++
T Consensus 73 i~iDg~H~~-----~~~~~dl~~~~~~l~~ggviv~d 104 (106)
T PF13578_consen 73 IFIDGDHSY-----EAVLRDLENALPRLAPGGVIVFD 104 (106)
T ss_dssp EEEES---H-----HHHHHHHHHHGGGEEEEEEEEEE
T ss_pred EEECCCCCH-----HHHHHHHHHHHHHcCCCeEEEEe
Confidence 999975321 11457889999999999999985
No 205
>PF05219 DREV: DREV methyltransferase; InterPro: IPR007884 This family contains DREV protein homologues from several eukaryotes. The function of this protein is unknown []. However, these proteins appear to be related to other methyltransferases.
Probab=98.31 E-value=5.3e-06 Score=71.28 Aligned_cols=93 Identities=17% Similarity=0.127 Sum_probs=66.8
Q ss_pred CCcEEEEcCcccHHHHHHHHHCCCceEEEEECChHHHHHHHHhcCccccccCCCCcEEEEEcccccc-ccCCCeeEEEEc
Q 035593 78 PGPIGILGFGAGSAARLILDLYPEAVIHGWELDPSVIKVAREFFALEKLEKSYPDRLFVYVGNALKA-SLKDGFSGILVD 156 (269)
Q Consensus 78 ~~~VL~iG~G~G~~~~~l~~~~p~~~v~~vEidp~~~~~a~~~~~~~~~~~~~~~rv~~~~~D~~~~-~~~~~yD~I~~d 156 (269)
..++||||+|.|.++..++..+. +|++-|+++.|...-+++ .++++.. .++ ..+.+||+|.+-
T Consensus 95 ~~~lLDlGAGdG~VT~~l~~~f~--~v~aTE~S~~Mr~rL~~k------------g~~vl~~--~~w~~~~~~fDvIscL 158 (265)
T PF05219_consen 95 DKSLLDLGAGDGEVTERLAPLFK--EVYATEASPPMRWRLSKK------------GFTVLDI--DDWQQTDFKFDVISCL 158 (265)
T ss_pred CCceEEecCCCcHHHHHHHhhcc--eEEeecCCHHHHHHHHhC------------CCeEEeh--hhhhccCCceEEEeeh
Confidence 57899999999999999988664 599999999996554443 2343322 235 445689999741
Q ss_pred CCCCCCCCC-CCCcHHHHHHHHhhccCCcEEEEEec
Q 035593 157 LFSKGSLLS-ELEDPNTWEKLRQCLRKGGRIMVNVG 191 (269)
Q Consensus 157 ~~~~~~~~~-~l~~~e~~~~~~~~L~pgG~l~~~~~ 191 (269)
.... ......+++.+++.|+|+|++++-+.
T Consensus 159 -----NvLDRc~~P~~LL~~i~~~l~p~G~lilAvV 189 (265)
T PF05219_consen 159 -----NVLDRCDRPLTLLRDIRRALKPNGRLILAVV 189 (265)
T ss_pred -----hhhhccCCHHHHHHHHHHHhCCCCEEEEEEE
Confidence 1111 12236899999999999999887653
No 206
>PF02384 N6_Mtase: N-6 DNA Methylase; InterPro: IPR003356 This domain is fpound in N-6 adenine-specific DNA methylase (2.1.1.72 from EC) from Type I and Type IC restriction systems. These enzymes are responsible for the methylation of specific DNA sequences in order to prevent the host from digesting its own genome via its restriction enzymes. These methylases have the same sequence specificity as their corresponding restriction enzymes. The type I restriction and modification system is composed of three polypeptides R, M and S. The M and S subunits together form a methyltransferase that methylates two adenine residues in complementary strands of a bipartite DNA recognition sequence. In the presence of the R subunit, the complex can also act as an endonuclease, binding to the same target sequence but cutting the DNA some distance from this site. Whether the DNA is cut or modified depends on the methylation state of the target sequence. When the target site is unmodified, the DNA is cut. When the target site is hemimethylated, the complex acts as a maintenance methyltransferase, modifying the DNA so that both strands become methylated.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2F8L_A 2Y7C_C 2Y7H_C 2AR0_B 3KHK_A 3LKD_A 2OKC_B.
Probab=98.31 E-value=1.4e-06 Score=77.85 Aligned_cols=122 Identities=18% Similarity=0.210 Sum_probs=78.6
Q ss_pred HHHhcCCCCCCCCcEEEEcCcccHHHHHHHHH-------CCCceEEEEECChHHHHHHHHhcCccccccCCCCcEEEEEc
Q 035593 67 DAFATLPPILPPGPIGILGFGAGSAARLILDL-------YPEAVIHGWELDPSVIKVAREFFALEKLEKSYPDRLFVYVG 139 (269)
Q Consensus 67 ~~~~~~~~l~~~~~VL~iG~G~G~~~~~l~~~-------~p~~~v~~vEidp~~~~~a~~~~~~~~~~~~~~~rv~~~~~ 139 (269)
+.|+.+....+..+|||-.||+|.+...+.++ .+..++.++|+++.++.+|+-++-+.... .....+..+
T Consensus 36 ~l~~~~~~~~~~~~VlDPacGsG~fL~~~~~~i~~~~~~~~~~~i~G~ei~~~~~~la~~nl~l~~~~---~~~~~i~~~ 112 (311)
T PF02384_consen 36 DLMVKLLNPKKGDSVLDPACGSGGFLVAAMEYIKEKRNKIKEINIYGIEIDPEAVALAKLNLLLHGID---NSNINIIQG 112 (311)
T ss_dssp HHHHHHHTT-TTEEEEETT-TTSHHHHHHHHHHHTCHHHHCCEEEEEEES-HHHHHHHHHHHHHTTHH---CBGCEEEES
T ss_pred HHHHhhhhccccceeechhhhHHHHHHHHHHhhcccccccccceeEeecCcHHHHHHHHhhhhhhccc---ccccccccc
Confidence 34433323345668999999999999888764 36789999999999999998775332211 234568899
Q ss_pred ccccc-c--cCCCeeEEEEcCCCCCC-C-CCC------C---------CcHHHHHHHHhhccCCcEEEEEec
Q 035593 140 NALKA-S--LKDGFSGILVDLFSKGS-L-LSE------L---------EDPNTWEKLRQCLRKGGRIMVNVG 191 (269)
Q Consensus 140 D~~~~-~--~~~~yD~I~~d~~~~~~-~-~~~------l---------~~~e~~~~~~~~L~pgG~l~~~~~ 191 (269)
|.... . ...+||+|+.+++-... . ... + ..-.|+..+.+.|+++|.+++-+.
T Consensus 113 d~l~~~~~~~~~~~D~ii~NPPf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Fi~~~l~~Lk~~G~~~~Ilp 184 (311)
T PF02384_consen 113 DSLENDKFIKNQKFDVIIGNPPFGSKEWKDEELEKDERFKKYFPPKSNAEYAFIEHALSLLKPGGRAAIILP 184 (311)
T ss_dssp -TTTSHSCTST--EEEEEEE--CTCES-STGGGCTTCCCTTCSSSTTEHHHHHHHHHHHTEEEEEEEEEEEE
T ss_pred ccccccccccccccccccCCCCccccccccccccccccccccCCCccchhhhhHHHHHhhcccccceeEEec
Confidence 98765 2 25799999998543322 0 000 0 012588999999999999888774
No 207
>PRK01747 mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltransferase/FAD-dependent cmnm(5)s(2)U34 oxidoreductase; Reviewed
Probab=98.29 E-value=2.7e-06 Score=83.73 Aligned_cols=112 Identities=19% Similarity=0.194 Sum_probs=78.7
Q ss_pred CCcEEEEcCcccHHHHHHHHHC-------C-----CceEEEEECChH---HHHHHH-----------HhcC-c----ccc
Q 035593 78 PGPIGILGFGAGSAARLILDLY-------P-----EAVIHGWELDPS---VIKVAR-----------EFFA-L----EKL 126 (269)
Q Consensus 78 ~~~VL~iG~G~G~~~~~l~~~~-------p-----~~~v~~vEidp~---~~~~a~-----------~~~~-~----~~~ 126 (269)
.-+|||+|.|+|.....+.+.+ | ..+++++|.+|- -+..+- +... . +..
T Consensus 58 ~~~i~e~gfG~G~N~l~~~~~~~~~~~~~~~~~~~~l~~~s~E~~p~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~ 137 (662)
T PRK01747 58 RFVIAETGFGTGLNFLATWQAFDQFRQRHPPARLKRLHFISFEKFPLTRADLARAHQHWPELAPLAEQLQAQWPLLLPGC 137 (662)
T ss_pred cEEEEecCcchHHHHHHHHHHHHHhhhhCCCCCCceEEEEEEECCCCCHHHHHHHHhhCcccHHHHHHHHHhCCccCCCc
Confidence 4689999999999876666443 3 359999998662 222221 1110 0 000
Q ss_pred c--cCCC--CcEEEEEcccccc--ccCCCeeEEEEcCCCCCCCCCCCCcHHHHHHHHhhccCCcEEEEEe
Q 035593 127 E--KSYP--DRLFVYVGNALKA--SLKDGFSGILVDLFSKGSLLSELEDPNTWEKLRQCLRKGGRIMVNV 190 (269)
Q Consensus 127 ~--~~~~--~rv~~~~~D~~~~--~~~~~yD~I~~d~~~~~~~~~~l~~~e~~~~~~~~L~pgG~l~~~~ 190 (269)
. .+.+ -+++++.+|+++. ....++|+|++|.|++ ...+.+++.++|+.++++++|||.++...
T Consensus 138 ~~~~~~~~~~~l~l~~gd~~~~~~~~~~~~d~~~lD~FsP-~~np~~W~~~~~~~l~~~~~~~~~~~t~t 206 (662)
T PRK01747 138 HRLLFDDGRVTLDLWFGDANELLPQLDARADAWFLDGFAP-AKNPDMWSPNLFNALARLARPGATLATFT 206 (662)
T ss_pred eEEEecCCcEEEEEEecCHHHHHHhccccccEEEeCCCCC-ccChhhccHHHHHHHHHHhCCCCEEEEee
Confidence 0 0111 2567889999987 3346799999999987 46678999999999999999999999765
No 208
>PF06080 DUF938: Protein of unknown function (DUF938); InterPro: IPR010342 This family consists of several hypothetical proteins from both prokaryotes and eukaryotes. The function of this family is unknown.
Probab=98.28 E-value=3e-06 Score=70.61 Aligned_cols=108 Identities=14% Similarity=0.151 Sum_probs=73.0
Q ss_pred CCC-cEEEEcCcccHHHHHHHHHCCCceEEEEECChHHHHHHHHhc---CccccccCCCCcEEEEEccc-cccc-----c
Q 035593 77 PPG-PIGILGFGAGSAARLILDLYPEAVIHGWELDPSVIKVAREFF---ALEKLEKSYPDRLFVYVGNA-LKAS-----L 146 (269)
Q Consensus 77 ~~~-~VL~iG~G~G~~~~~l~~~~p~~~v~~vEidp~~~~~a~~~~---~~~~~~~~~~~rv~~~~~D~-~~~~-----~ 146 (269)
+.. +|||||+|+|..+.++++++|+.+-.--|+++....-.+.+. +++.. .+-+.+=..+. ..+. .
T Consensus 24 ~~~~~vLEiaSGtGqHa~~FA~~lP~l~WqPSD~~~~~~~sI~a~~~~~~~~Nv----~~P~~lDv~~~~w~~~~~~~~~ 99 (204)
T PF06080_consen 24 DSGTRVLEIASGTGQHAVYFAQALPHLTWQPSDPDDNLRPSIRAWIAEAGLPNV----RPPLALDVSAPPWPWELPAPLS 99 (204)
T ss_pred ccCceEEEEcCCccHHHHHHHHHCCCCEEcCCCCChHHHhhHHHHHHhcCCccc----CCCeEeecCCCCCccccccccC
Confidence 444 499999999999999999999999999999998865445443 22221 11222211111 1111 3
Q ss_pred CCCeeEEEEcCCCCCCCCCCCCcHHHHHHHHhhccCCcEEEEEe
Q 035593 147 KDGFSGILVDLFSKGSLLSELEDPNTWEKLRQCLRKGGRIMVNV 190 (269)
Q Consensus 147 ~~~yD~I~~d~~~~~~~~~~l~~~e~~~~~~~~L~pgG~l~~~~ 190 (269)
.+.||+|++--.- .+.+.-.++.+|+.+.+.|++||.|+++-
T Consensus 100 ~~~~D~i~~~N~l--HI~p~~~~~~lf~~a~~~L~~gG~L~~YG 141 (204)
T PF06080_consen 100 PESFDAIFCINML--HISPWSAVEGLFAGAARLLKPGGLLFLYG 141 (204)
T ss_pred CCCcceeeehhHH--HhcCHHHHHHHHHHHHHhCCCCCEEEEeC
Confidence 5689999963221 22333346789999999999999999854
No 209
>PRK04148 hypothetical protein; Provisional
Probab=98.25 E-value=1e-05 Score=63.07 Aligned_cols=65 Identities=14% Similarity=0.155 Sum_probs=53.8
Q ss_pred CCCcEEEEcCcccH-HHHHHHHHCCCceEEEEECChHHHHHHHHhcCccccccCCCCcEEEEEcccccc--ccCCCeeEE
Q 035593 77 PPGPIGILGFGAGS-AARLILDLYPEAVIHGWELDPSVIKVAREFFALEKLEKSYPDRLFVYVGNALKA--SLKDGFSGI 153 (269)
Q Consensus 77 ~~~~VL~iG~G~G~-~~~~l~~~~p~~~v~~vEidp~~~~~a~~~~~~~~~~~~~~~rv~~~~~D~~~~--~~~~~yD~I 153 (269)
++.+||+||||.|. ++..|.+ .+.+|+++|+||..++.|++. .++++.+|.++- ..-+.+|+|
T Consensus 16 ~~~kileIG~GfG~~vA~~L~~--~G~~ViaIDi~~~aV~~a~~~------------~~~~v~dDlf~p~~~~y~~a~li 81 (134)
T PRK04148 16 KNKKIVELGIGFYFKVAKKLKE--SGFDVIVIDINEKAVEKAKKL------------GLNAFVDDLFNPNLEIYKNAKLI 81 (134)
T ss_pred cCCEEEEEEecCCHHHHHHHHH--CCCEEEEEECCHHHHHHHHHh------------CCeEEECcCCCCCHHHHhcCCEE
Confidence 45789999999996 8877776 478999999999999988775 268889999876 445789999
Q ss_pred EE
Q 035593 154 LV 155 (269)
Q Consensus 154 ~~ 155 (269)
..
T Consensus 82 ys 83 (134)
T PRK04148 82 YS 83 (134)
T ss_pred EE
Confidence 85
No 210
>COG2265 TrmA SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=98.23 E-value=7.5e-06 Score=76.25 Aligned_cols=102 Identities=20% Similarity=0.173 Sum_probs=81.7
Q ss_pred CCCCcEEEEcCcccHHHHHHHHHCCCceEEEEECChHHHHHHHHhcCccccccCCCCcEEEEEcccccc--c--cCCCee
Q 035593 76 LPPGPIGILGFGAGSAARLILDLYPEAVIHGWELDPSVIKVAREFFALEKLEKSYPDRLFVYVGNALKA--S--LKDGFS 151 (269)
Q Consensus 76 ~~~~~VL~iG~G~G~~~~~l~~~~p~~~v~~vEidp~~~~~a~~~~~~~~~~~~~~~rv~~~~~D~~~~--~--~~~~yD 151 (269)
.+..++||+=||.|.++..|++ ...+|++||++++.++.|+++...+. -.+++++.+|+.++ . ....+|
T Consensus 292 ~~~~~vlDlYCGvG~f~l~lA~--~~~~V~gvEi~~~aV~~A~~NA~~n~-----i~N~~f~~~~ae~~~~~~~~~~~~d 364 (432)
T COG2265 292 AGGERVLDLYCGVGTFGLPLAK--RVKKVHGVEISPEAVEAAQENAAANG-----IDNVEFIAGDAEEFTPAWWEGYKPD 364 (432)
T ss_pred cCCCEEEEeccCCChhhhhhcc--cCCEEEEEecCHHHHHHHHHHHHHcC-----CCcEEEEeCCHHHHhhhccccCCCC
Confidence 3567899999999999999996 46799999999999999999987654 34699999999998 2 235889
Q ss_pred EEEEcCCCCCCCCCCCCcHHHHHHHHhhccCCcEEEEEec
Q 035593 152 GILVDLFSKGSLLSELEDPNTWEKLRQCLRKGGRIMVNVG 191 (269)
Q Consensus 152 ~I~~d~~~~~~~~~~l~~~e~~~~~~~~L~pgG~l~~~~~ 191 (269)
+|++|.+-.. ..+++++.+. .++|..++.+.+.
T Consensus 365 ~VvvDPPR~G------~~~~~lk~l~-~~~p~~IvYVSCN 397 (432)
T COG2265 365 VVVVDPPRAG------ADREVLKQLA-KLKPKRIVYVSCN 397 (432)
T ss_pred EEEECCCCCC------CCHHHHHHHH-hcCCCcEEEEeCC
Confidence 9999976553 1346666665 4678888888774
No 211
>PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional
Probab=98.23 E-value=1e-05 Score=80.07 Aligned_cols=123 Identities=15% Similarity=0.061 Sum_probs=81.6
Q ss_pred hHHHHHhcCCCC-CCCCcEEEEcCcccHHHHHHHHHC----C--------------------------------------
Q 035593 64 TYFDAFATLPPI-LPPGPIGILGFGAGSAARLILDLY----P-------------------------------------- 100 (269)
Q Consensus 64 ~y~~~~~~~~~l-~~~~~VL~iG~G~G~~~~~l~~~~----p-------------------------------------- 100 (269)
.....|+.+... .+...++|-+||+|+++.+.+... |
T Consensus 176 tlAaa~l~~a~w~~~~~~l~DP~CGSGTilIEAa~~~~~~~pg~~r~~f~f~~~~~~~~~~w~~~~~~a~~~~~~~~~~~ 255 (702)
T PRK11783 176 NLAAAILLRSGWPQEGTPLLDPMCGSGTLLIEAAMMAADIAPGLHRERWGFSGWLGHDEALWQELLEEAQERARAGLAEL 255 (702)
T ss_pred HHHHHHHHHcCCCCCCCeEEccCCCccHHHHHHHHHHhcCCCCccccccccccCCCCCHHHHHHHHHHHHHHHhhccccc
Confidence 344445433223 457889999999999998876421 1
Q ss_pred CceEEEEECChHHHHHHHHhcCccccccCCCCcEEEEEccccccc---cCCCeeEEEEcCCCCCCCCCCCCcHHHHHHHH
Q 035593 101 EAVIHGWELDPSVIKVAREFFALEKLEKSYPDRLFVYVGNALKAS---LKDGFSGILVDLFSKGSLLSELEDPNTWEKLR 177 (269)
Q Consensus 101 ~~~v~~vEidp~~~~~a~~~~~~~~~~~~~~~rv~~~~~D~~~~~---~~~~yD~I~~d~~~~~~~~~~l~~~e~~~~~~ 177 (269)
..+|+++|+|+.+++.|+++....+. ..++++..+|+.++. ..++||+|+++++-.......-...++|+.+.
T Consensus 256 ~~~i~G~Did~~av~~A~~N~~~~g~----~~~i~~~~~D~~~~~~~~~~~~~d~IvtNPPYg~r~~~~~~l~~lY~~lg 331 (702)
T PRK11783 256 PSKFYGSDIDPRVIQAARKNARRAGV----AELITFEVKDVADLKNPLPKGPTGLVISNPPYGERLGEEPALIALYSQLG 331 (702)
T ss_pred CceEEEEECCHHHHHHHHHHHHHcCC----CcceEEEeCChhhcccccccCCCCEEEECCCCcCccCchHHHHHHHHHHH
Confidence 23799999999999999999754431 357999999998872 23579999998543322221112245666665
Q ss_pred hhcc---CCcEEEEEe
Q 035593 178 QCLR---KGGRIMVNV 190 (269)
Q Consensus 178 ~~L~---pgG~l~~~~ 190 (269)
+.|+ +|+.+++-.
T Consensus 332 ~~lk~~~~g~~~~llt 347 (702)
T PRK11783 332 RRLKQQFGGWNAALFS 347 (702)
T ss_pred HHHHHhCCCCeEEEEe
Confidence 5555 677665543
No 212
>COG1889 NOP1 Fibrillarin-like rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=98.22 E-value=0.00052 Score=56.89 Aligned_cols=138 Identities=17% Similarity=0.222 Sum_probs=94.3
Q ss_pred CCCCCCcEEEEcCcccHHHHHHHHHCCCceEEEEECChHHHHHHHHhcCccccccCCCCcEEEEEcccccc----ccCCC
Q 035593 74 PILPPGPIGILGFGAGSAARLILDLYPEAVIHGWELDPSVIKVAREFFALEKLEKSYPDRLFVYVGNALKA----SLKDG 149 (269)
Q Consensus 74 ~l~~~~~VL~iG~G~G~~~~~l~~~~p~~~v~~vEidp~~~~~a~~~~~~~~~~~~~~~rv~~~~~D~~~~----~~~~~ 149 (269)
.+.+..+||-||+.+|+...++..-.++..|.+||.+|.+.+-.-.-.. ..+++--+.+||+.- .--+.
T Consensus 73 pi~~g~~VLYLGAasGTTvSHVSDIv~~G~iYaVEfs~R~~reLl~~a~-------~R~Ni~PIL~DA~~P~~Y~~~Ve~ 145 (231)
T COG1889 73 PIKEGSKVLYLGAASGTTVSHVSDIVGEGRIYAVEFSPRPMRELLDVAE-------KRPNIIPILEDARKPEKYRHLVEK 145 (231)
T ss_pred CcCCCCEEEEeeccCCCcHhHHHhccCCCcEEEEEecchhHHHHHHHHH-------hCCCceeeecccCCcHHhhhhccc
Confidence 3567899999999999999999997777899999999987543322211 135678888999864 34567
Q ss_pred eeEEEEcCCCCCCCCCCCCcHHHHHHHHhhccCCcEEEEEecCCCccccccccchhHHHHHHHHHHHHHhcCceEEEE
Q 035593 150 FSGILVDLFSKGSLLSELEDPNTWEKLRQCLRKGGRIMVNVGGSCVEAEDSRRDGKVVMEATLKAMHKVFGKKLYVLS 227 (269)
Q Consensus 150 yD~I~~d~~~~~~~~~~l~~~e~~~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~F~~~v~~~~ 227 (269)
.|+|+.|...+. ..+-+..++...|+++|.+++.+-..+- +...++...+...+.+|++..-.-...+.
T Consensus 146 VDviy~DVAQp~------Qa~I~~~Na~~FLk~~G~~~i~iKArSI---dvT~dp~~vf~~ev~kL~~~~f~i~e~~~ 214 (231)
T COG1889 146 VDVIYQDVAQPN------QAEILADNAEFFLKKGGYVVIAIKARSI---DVTADPEEVFKDEVEKLEEGGFEILEVVD 214 (231)
T ss_pred ccEEEEecCCch------HHHHHHHHHHHhcccCCeEEEEEEeecc---cccCCHHHHHHHHHHHHHhcCceeeEEec
Confidence 999999976443 1356778889999999954443321111 12234466777777777776312344443
No 213
>PF00398 RrnaAD: Ribosomal RNA adenine dimethylase; InterPro: IPR001737 This family of proteins include rRNA adenine dimethylases (e.g. KsgA) and the Erythromycin resistance methylases (Erm). The bacterial enzyme KsgA catalyses the transfer of a total of four methyl groups from S-adenosyl-l-methionine (S-AdoMet) to two adjacent adenosine bases in 16S rRNA. This enzyme and the resulting modified adenosine bases appear to be conserved in all species of eubacteria, eukaryotes, and archaea, and in eukaryotic organelles. Bacterial resistance to the aminoglycoside antibiotic kasugamycin involves inactivation of KsgA and resulting loss of the dimethylations, with modest consequences to the overall fitness of the organism. In contrast, the yeast ortholog, Dim1, is essential. In Saccharomyces cerevisiae (Baker's yeast), and presumably in other eukaryotes, the enzyme performs a vital role in pre-rRNA processing in addition to its methylating activity. The best conserved region in these enzymes is located in the N-terminal section and corresponds to a region that is probably involved in S-adenosyl methionine (SAM) binding domain. The crystal structure of KsgA from Escherichia coli has been solved to a resolution of 2.1A. It bears a strong similarity to the crystal structure of ErmC' from Bacillus stearothermophilus and a lesser similarity to the yeast mitochondrial transcription factor, sc-mtTFB []. The Erm family of RNA methyltransferases, which methylate a single adenosine base in 23S rRNA confer resistance to the MLS-B group of antibiotics. Despite their sequence similarity, the two enzyme families have strikingly different levels of regulation that remain to be elucidated. Other orthologs, of this family include the yeast and Homo sapiens (Human) mitochondrial transcription factors (MTF1 and h-mtTFB respectively), which are nuclear encoded []. Human-mtTFB is able to stimulate transcription in vitro independently of its S-adenosylmethionine binding and rRNA methyltransferase activity [].; GO: 0000179 rRNA (adenine-N6,N6-)-dimethyltransferase activity, 0008649 rRNA methyltransferase activity, 0000154 rRNA modification; PDB: 3FTF_A 3R9X_B 3FTE_A 3FTC_A 3FTD_A 3GRY_A 3FYC_A 3GRU_A 3FYD_A 3GRV_A ....
Probab=98.21 E-value=1.2e-05 Score=70.26 Aligned_cols=98 Identities=21% Similarity=0.169 Sum_probs=72.4
Q ss_pred HHHHHhcCCCCCCCCcEEEEcCcccHHHHHHHHHCCCceEEEEECChHHHHHHHHhcCccccccCCCCcEEEEEcccccc
Q 035593 65 YFDAFATLPPILPPGPIGILGFGAGSAARLILDLYPEAVIHGWELDPSVIKVAREFFALEKLEKSYPDRLFVYVGNALKA 144 (269)
Q Consensus 65 y~~~~~~~~~l~~~~~VL~iG~G~G~~~~~l~~~~p~~~v~~vEidp~~~~~a~~~~~~~~~~~~~~~rv~~~~~D~~~~ 144 (269)
..+.++....+.+...|||||.|.|.++..|++.. .++++||+|+.+++..++.+.. +++++++.+|+.++
T Consensus 18 ~~~~Iv~~~~~~~~~~VlEiGpG~G~lT~~L~~~~--~~v~~vE~d~~~~~~L~~~~~~-------~~~~~vi~~D~l~~ 88 (262)
T PF00398_consen 18 IADKIVDALDLSEGDTVLEIGPGPGALTRELLKRG--KRVIAVEIDPDLAKHLKERFAS-------NPNVEVINGDFLKW 88 (262)
T ss_dssp HHHHHHHHHTCGTTSEEEEESSTTSCCHHHHHHHS--SEEEEEESSHHHHHHHHHHCTT-------CSSEEEEES-TTTS
T ss_pred HHHHHHHhcCCCCCCEEEEeCCCCccchhhHhccc--CcceeecCcHhHHHHHHHHhhh-------cccceeeecchhcc
Confidence 34444433234478899999999999999999864 8999999999999999998762 47899999999998
Q ss_pred ccC----CCeeEEEEcCCCCCCCCCCCCcHHHHHHHHh
Q 035593 145 SLK----DGFSGILVDLFSKGSLLSELEDPNTWEKLRQ 178 (269)
Q Consensus 145 ~~~----~~yD~I~~d~~~~~~~~~~l~~~e~~~~~~~ 178 (269)
... .....|+.+++-. .+..++..+..
T Consensus 89 ~~~~~~~~~~~~vv~NlPy~-------is~~il~~ll~ 119 (262)
T PF00398_consen 89 DLYDLLKNQPLLVVGNLPYN-------ISSPILRKLLE 119 (262)
T ss_dssp CGGGHCSSSEEEEEEEETGT-------GHHHHHHHHHH
T ss_pred ccHHhhcCCceEEEEEeccc-------chHHHHHHHhh
Confidence 322 4667777654321 24566666665
No 214
>KOG4589 consensus Cell division protein FtsJ [Cell cycle control, cell division, chromosome partitioning]
Probab=98.21 E-value=4.2e-05 Score=62.44 Aligned_cols=124 Identities=12% Similarity=0.151 Sum_probs=86.2
Q ss_pred CCCCCcEEEEcCcccHHHHHHHHHC-CCceEEEEECChHHHHHHHHhcCccccccCCCCcEEEEEc-ccccc--------
Q 035593 75 ILPPGPIGILGFGAGSAARLILDLY-PEAVIHGWELDPSVIKVAREFFALEKLEKSYPDRLFVYVG-NALKA-------- 144 (269)
Q Consensus 75 l~~~~~VL~iG~G~G~~~~~l~~~~-p~~~v~~vEidp~~~~~a~~~~~~~~~~~~~~~rv~~~~~-D~~~~-------- 144 (269)
+.|..+|||+||..|+++....++. |+..|.+||+-+ +. + .+.++++.+ |..+-
T Consensus 67 l~p~~~VlD~G~APGsWsQVavqr~~p~g~v~gVDllh---------~~-p------~~Ga~~i~~~dvtdp~~~~ki~e 130 (232)
T KOG4589|consen 67 LRPEDTVLDCGAAPGSWSQVAVQRVNPNGMVLGVDLLH---------IE-P------PEGATIIQGNDVTDPETYRKIFE 130 (232)
T ss_pred cCCCCEEEEccCCCChHHHHHHHhhCCCceEEEEeeee---------cc-C------CCCcccccccccCCHHHHHHHHH
Confidence 4578999999999999999888876 889999999943 21 1 235677777 66542
Q ss_pred -ccCCCeeEEEEcCCCCCCC---CCCCCc----HHHHHHHHhhccCCcEEEEEecCCCccccccccchhHHHHHHHHHHH
Q 035593 145 -SLKDGFSGILVDLFSKGSL---LSELED----PNTWEKLRQCLRKGGRIMVNVGGSCVEAEDSRRDGKVVMEATLKAMH 216 (269)
Q Consensus 145 -~~~~~yD~I~~d~~~~~~~---~~~l~~----~e~~~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 216 (269)
.++.+.|+|++|......- ..|... .+.+.-....+.|+|.+++-+|.... -..+.+.|.
T Consensus 131 ~lp~r~VdvVlSDMapnaTGvr~~Dh~~~i~LC~s~l~~al~~~~p~g~fvcK~w~g~e------------~~~l~r~l~ 198 (232)
T KOG4589|consen 131 ALPNRPVDVVLSDMAPNATGVRIRDHYRSIELCDSALLFALTLLIPNGSFVCKLWDGSE------------EALLQRRLQ 198 (232)
T ss_pred hCCCCcccEEEeccCCCCcCcchhhHHHHHHHHHHHHHHhhhhcCCCcEEEEEEecCCc------------hHHHHHHHH
Confidence 3567899999997654321 123222 23444456778999999999986531 345677888
Q ss_pred HHhcCceEEEE
Q 035593 217 KVFGKKLYVLS 227 (269)
Q Consensus 217 ~~F~~~v~~~~ 227 (269)
++|. .|-.++
T Consensus 199 ~~f~-~Vk~vK 208 (232)
T KOG4589|consen 199 AVFT-NVKKVK 208 (232)
T ss_pred HHhh-hcEeeC
Confidence 9995 566553
No 215
>PF05430 Methyltransf_30: S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR008471 This entry contains several uncharacterised bacterial proteins with no known function.; GO: 0016645 oxidoreductase activity, acting on the CH-NH group of donors, 0055114 oxidation-reduction process; PDB: 2E58_D 3SGL_A 3PVC_A 3AWI_D 3PS9_A 2QY6_A.
Probab=98.18 E-value=6e-06 Score=63.79 Aligned_cols=91 Identities=23% Similarity=0.300 Sum_probs=62.3
Q ss_pred CCcEEEEEcccccc--ccCCCeeEEEEcCCCCCCCCCCCCcHHHHHHHHhhccCCcEEEEEecCCCccccccccchhHHH
Q 035593 131 PDRLFVYVGNALKA--SLKDGFSGILVDLFSKGSLLSELEDPNTWEKLRQCLRKGGRIMVNVGGSCVEAEDSRRDGKVVM 208 (269)
Q Consensus 131 ~~rv~~~~~D~~~~--~~~~~yD~I~~d~~~~~~~~~~l~~~e~~~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~~~~~ 208 (269)
.-+++++.+|+++. .....+|+|+.|.|++ ...+.+++.++|+.++++++|||+++.....
T Consensus 30 ~v~L~L~~gDa~~~l~~l~~~~Da~ylDgFsP-~~nPelWs~e~~~~l~~~~~~~~~l~Tys~a---------------- 92 (124)
T PF05430_consen 30 NVTLTLWFGDAREMLPQLDARFDAWYLDGFSP-AKNPELWSEELFKKLARLSKPGGTLATYSSA---------------- 92 (124)
T ss_dssp TEEEEEEES-HHHHHHHB-T-EEEEEE-SS-T-TTSGGGSSHHHHHHHHHHEEEEEEEEES--B----------------
T ss_pred CEEEEEEEcHHHHHHHhCcccCCEEEecCCCC-cCCcccCCHHHHHHHHHHhCCCcEEEEeech----------------
Confidence 34688999999987 4568999999999987 4677899999999999999999999885531
Q ss_pred HHHHHHHHHH-hcCceEEEEcCCCCceEEEEec
Q 035593 209 EATLKAMHKV-FGKKLYVLSLGNRKDDSLIALT 240 (269)
Q Consensus 209 ~~~~~~l~~~-F~~~v~~~~~~~~~n~v~~~~~ 240 (269)
..+.+.|.++ | .|...+-......++.+..
T Consensus 93 ~~Vr~~L~~aGF--~v~~~~g~g~Kr~~~~a~~ 123 (124)
T PF05430_consen 93 GAVRRALQQAGF--EVEKVPGFGRKREMLRAVK 123 (124)
T ss_dssp HHHHHHHHHCTE--EEEEEE-STTSSEEEEEEC
T ss_pred HHHHHHHHHcCC--EEEEcCCCCCcchheEEEc
Confidence 1345556655 5 3665654455566666653
No 216
>TIGR00478 tly hemolysin TlyA family protein. Hemolysins are exotoxins that attack blood cell membranes and cause cell rupture, often by forming a pore in the membrane. At least two members of this protein family have been characterized indirectly as pore-forming hemolysins, one from the spirochete Serpula (Treponema) hyodysenteriae and one from Mycobacterium tuberculosis. However, homology domains in this protein suggest methyltransferase activity (pfam01728) and RNA-binding activity (pfam01479).
Probab=98.14 E-value=2.2e-05 Score=67.10 Aligned_cols=91 Identities=11% Similarity=0.036 Sum_probs=59.5
Q ss_pred CCCCcEEEEcCcccHHHHHHHHHCCCceEEEEECChHHHHHHHHhcCccccccCCCCcEE-EEEccccccc------cCC
Q 035593 76 LPPGPIGILGFGAGSAARLILDLYPEAVIHGWELDPSVIKVAREFFALEKLEKSYPDRLF-VYVGNALKAS------LKD 148 (269)
Q Consensus 76 ~~~~~VL~iG~G~G~~~~~l~~~~p~~~v~~vEidp~~~~~a~~~~~~~~~~~~~~~rv~-~~~~D~~~~~------~~~ 148 (269)
.+.+.|||+|||+|.++..+++. +..+|++||+++.++....+. ++++. +-..|++... .-.
T Consensus 74 ~~~~~vlDiG~gtG~~t~~l~~~-ga~~v~avD~~~~~l~~~l~~----------~~~v~~~~~~ni~~~~~~~~~~d~~ 142 (228)
T TIGR00478 74 VKNKIVLDVGSSTGGFTDCALQK-GAKEVYGVDVGYNQLAEKLRQ----------DERVKVLERTNIRYVTPADIFPDFA 142 (228)
T ss_pred CCCCEEEEcccCCCHHHHHHHHc-CCCEEEEEeCCHHHHHHHHhc----------CCCeeEeecCCcccCCHhHcCCCce
Confidence 35778999999999999999984 456899999999877652211 23443 2333444321 112
Q ss_pred CeeEEEEcCCCCCCCCCCCCcHHHHHHHHhhccCCcEEEEEe
Q 035593 149 GFSGILVDLFSKGSLLSELEDPNTWEKLRQCLRKGGRIMVNV 190 (269)
Q Consensus 149 ~yD~I~~d~~~~~~~~~~l~~~e~~~~~~~~L~pgG~l~~~~ 190 (269)
.+|++|+.. .-.+..+.+.|+| |.+++-+
T Consensus 143 ~~DvsfiS~------------~~~l~~i~~~l~~-~~~~~L~ 171 (228)
T TIGR00478 143 TFDVSFISL------------ISILPELDLLLNP-NDLTLLF 171 (228)
T ss_pred eeeEEEeeh------------HhHHHHHHHHhCc-CeEEEEc
Confidence 455555421 2368889999999 7766544
No 217
>COG0357 GidB Predicted S-adenosylmethionine-dependent methyltransferase involved in bacterial cell division [Cell envelope biogenesis, outer membrane]
Probab=98.13 E-value=2.9e-05 Score=65.53 Aligned_cols=107 Identities=16% Similarity=0.134 Sum_probs=79.9
Q ss_pred cCCCCCC-CCcEEEEcCcccHHHHHHHHHCCCceEEEEECChHHH---HHHHHhcCccccccCCCCcEEEEEcccccccc
Q 035593 71 TLPPILP-PGPIGILGFGAGSAARLILDLYPEAVIHGWELDPSVI---KVAREFFALEKLEKSYPDRLFVYVGNALKASL 146 (269)
Q Consensus 71 ~~~~l~~-~~~VL~iG~G~G~~~~~l~~~~p~~~v~~vEidp~~~---~~a~~~~~~~~~~~~~~~rv~~~~~D~~~~~~ 146 (269)
..+.... +.+++|||.|+|.=+.-++=.+|+.+|+-+|....=+ +.+.+.+++ ++++++++.+.++..
T Consensus 60 ~~~~~~~~~~~~~DIGSGaGfPGipLAI~~p~~~vtLles~~Kk~~FL~~~~~eL~L--------~nv~i~~~RaE~~~~ 131 (215)
T COG0357 60 LLPYLDGKAKRVLDIGSGAGFPGIPLAIAFPDLKVTLLESLGKKIAFLREVKKELGL--------ENVEIVHGRAEEFGQ 131 (215)
T ss_pred hhhcccccCCEEEEeCCCCCCchhhHHHhccCCcEEEEccCchHHHHHHHHHHHhCC--------CCeEEehhhHhhccc
Confidence 3334434 6899999999998777766567999999999988655 444455554 469999999999854
Q ss_pred CCC-eeEEEEcCCCCCCCCCCCCcHHHHHHHHhhccCCcEEEEEecCC
Q 035593 147 KDG-FSGILVDLFSKGSLLSELEDPNTWEKLRQCLRKGGRIMVNVGGS 193 (269)
Q Consensus 147 ~~~-yD~I~~d~~~~~~~~~~l~~~e~~~~~~~~L~pgG~l~~~~~~~ 193 (269)
..+ ||+|.+=++.. ...+.+-+...|++||.+++.-+..
T Consensus 132 ~~~~~D~vtsRAva~--------L~~l~e~~~pllk~~g~~~~~k~~~ 171 (215)
T COG0357 132 EKKQYDVVTSRAVAS--------LNVLLELCLPLLKVGGGFLAYKGLA 171 (215)
T ss_pred ccccCcEEEeehccc--------hHHHHHHHHHhcccCCcchhhhHHh
Confidence 444 99999866543 3578888889999999887655443
No 218
>COG0144 Sun tRNA and rRNA cytosine-C5-methylases [Translation, ribosomal structure and biogenesis]
Probab=98.13 E-value=3.3e-05 Score=70.39 Aligned_cols=116 Identities=16% Similarity=0.165 Sum_probs=87.4
Q ss_pred CCCCCcEEEEcCcccHHHHHHHHHCCC--ceEEEEECChHHHHHHHHhcCccccccCCCCcEEEEEcccccc----ccCC
Q 035593 75 ILPPGPIGILGFGAGSAARLILDLYPE--AVIHGWELDPSVIKVAREFFALEKLEKSYPDRLFVYVGNALKA----SLKD 148 (269)
Q Consensus 75 l~~~~~VL~iG~G~G~~~~~l~~~~p~--~~v~~vEidp~~~~~a~~~~~~~~~~~~~~~rv~~~~~D~~~~----~~~~ 148 (269)
..|..+|||+.++.|+=+.+++....+ ..|+++|+++.-++..++++.--+ -.++.++..|++.+ ....
T Consensus 154 p~pge~VlD~cAAPGGKTthla~~~~~~~~iV~A~D~~~~Rl~~l~~nl~RlG-----~~nv~~~~~d~~~~~~~~~~~~ 228 (355)
T COG0144 154 PKPGERVLDLCAAPGGKTTHLAELMENEGAIVVAVDVSPKRLKRLRENLKRLG-----VRNVIVVNKDARRLAELLPGGE 228 (355)
T ss_pred CCCcCEEEEECCCCCCHHHHHHHhcCCCCceEEEEcCCHHHHHHHHHHHHHcC-----CCceEEEecccccccccccccC
Confidence 446899999999999999999987664 567999999999888887763211 23588999999876 2223
Q ss_pred CeeEEEEcCCCCCC-C----CCC-------------CCcHHHHHHHHhhccCCcEEEEEecCCCc
Q 035593 149 GFSGILVDLFSKGS-L----LSE-------------LEDPNTWEKLRQCLRKGGRIMVNVGGSCV 195 (269)
Q Consensus 149 ~yD~I~~d~~~~~~-~----~~~-------------l~~~e~~~~~~~~L~pgG~l~~~~~~~~~ 195 (269)
+||.|++|++-+.. + |.. -...+++..+.+.|||||.|+....+...
T Consensus 229 ~fD~iLlDaPCSg~G~irr~Pd~~~~~~~~~i~~l~~lQ~~iL~~a~~~lk~GG~LVYSTCS~~~ 293 (355)
T COG0144 229 KFDRILLDAPCSGTGVIRRDPDVKWRRTPEDIAELAKLQKEILAAALKLLKPGGVLVYSTCSLTP 293 (355)
T ss_pred cCcEEEECCCCCCCcccccCccccccCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEccCCch
Confidence 69999999765532 1 110 02358899999999999999998887754
No 219
>PRK10611 chemotaxis methyltransferase CheR; Provisional
Probab=98.12 E-value=7.5e-06 Score=72.27 Aligned_cols=110 Identities=14% Similarity=0.157 Sum_probs=72.3
Q ss_pred CCcEEEEcCccc----HHHHHHHHHCC----CceEEEEECChHHHHHHHHhc-C------ccc-----------------
Q 035593 78 PGPIGILGFGAG----SAARLILDLYP----EAVIHGWELDPSVIKVAREFF-A------LEK----------------- 125 (269)
Q Consensus 78 ~~~VL~iG~G~G----~~~~~l~~~~p----~~~v~~vEidp~~~~~a~~~~-~------~~~----------------- 125 (269)
+-+|+..||++| +++..+.+..+ +.+|+|.|||+.+++.|++-. + +++
T Consensus 116 ~irIWSAgCStGEEpYSlAmll~e~~~~~~~~~~I~atDIs~~aL~~Ar~G~Y~~~~~r~~p~~~~~ryF~~~~~~~~~~ 195 (287)
T PRK10611 116 EYRVWSAAASTGEEPYSIAMTLADTLGTAPGRWKVFASDIDTEVLEKARSGIYRQEELKTLSPQQLQRYFMRGTGPHEGL 195 (287)
T ss_pred CEEEEEccccCCHHHHHHHHHHHHhhcccCCCcEEEEEECCHHHHHHHHhCCCCHHHHhcCCHHHHHHHcccccCCCCce
Confidence 469999999999 45566655432 468999999999999998532 0 000
Q ss_pred cc--cCCCCcEEEEEcccccc--ccCCCeeEEEEc-CCCCCCCCCCCCcHHHHHHHHhhccCCcEEEEEe
Q 035593 126 LE--KSYPDRLFVYVGNALKA--SLKDGFSGILVD-LFSKGSLLSELEDPNTWEKLRQCLRKGGRIMVNV 190 (269)
Q Consensus 126 ~~--~~~~~rv~~~~~D~~~~--~~~~~yD~I~~d-~~~~~~~~~~l~~~e~~~~~~~~L~pgG~l~~~~ 190 (269)
+. ..-..+|++...|..+. ...+.||+|++- +.- +-..-.....++.+.+.|+|||+|++-.
T Consensus 196 ~~v~~~lr~~V~F~~~NL~~~~~~~~~~fD~I~cRNvli---yF~~~~~~~vl~~l~~~L~pgG~L~lG~ 262 (287)
T PRK10611 196 VRVRQELANYVDFQQLNLLAKQWAVPGPFDAIFCRNVMI---YFDKTTQERILRRFVPLLKPDGLLFAGH 262 (287)
T ss_pred EEEChHHHccCEEEcccCCCCCCccCCCcceeeHhhHHh---cCCHHHHHHHHHHHHHHhCCCcEEEEeC
Confidence 00 00124567777777653 235789999972 110 1111124689999999999999987743
No 220
>KOG3178 consensus Hydroxyindole-O-methyltransferase and related SAM-dependent methyltransferases [General function prediction only]
Probab=98.12 E-value=1.1e-05 Score=71.88 Aligned_cols=94 Identities=20% Similarity=0.315 Sum_probs=72.5
Q ss_pred CCcEEEEcCcccHHHHHHHHHCCCceEEEEECChHHHHHHHHhcCccccccCCCCcEEEEEccccccccCCCeeEEEEcC
Q 035593 78 PGPIGILGFGAGSAARLILDLYPEAVIHGWELDPSVIKVAREFFALEKLEKSYPDRLFVYVGNALKASLKDGFSGILVDL 157 (269)
Q Consensus 78 ~~~VL~iG~G~G~~~~~l~~~~p~~~v~~vEidp~~~~~a~~~~~~~~~~~~~~~rv~~~~~D~~~~~~~~~yD~I~~d~ 157 (269)
-...+|+|+|.|.+++.++.+||+ |.+++.|...+-.++.+++ + .|+.+.+|+++- ..+-|+|++--
T Consensus 178 v~~avDvGgGiG~v~k~ll~~fp~--ik~infdlp~v~~~a~~~~-~--------gV~~v~gdmfq~--~P~~daI~mkW 244 (342)
T KOG3178|consen 178 VNVAVDVGGGIGRVLKNLLSKYPH--IKGINFDLPFVLAAAPYLA-P--------GVEHVAGDMFQD--TPKGDAIWMKW 244 (342)
T ss_pred CceEEEcCCcHhHHHHHHHHhCCC--CceeecCHHHHHhhhhhhc-C--------Ccceeccccccc--CCCcCeEEEEe
Confidence 468999999999999999998886 7788888777777777664 3 388888998765 44566998743
Q ss_pred CCCCCCCCCCC---cHHHHHHHHhhccCCcEEEEE
Q 035593 158 FSKGSLLSELE---DPNTWEKLRQCLRKGGRIMVN 189 (269)
Q Consensus 158 ~~~~~~~~~l~---~~e~~~~~~~~L~pgG~l~~~ 189 (269)
...++. ..+|+++|++.|+|+|.+++-
T Consensus 245 -----iLhdwtDedcvkiLknC~~sL~~~GkIiv~ 274 (342)
T KOG3178|consen 245 -----ILHDWTDEDCVKILKNCKKSLPPGGKIIVV 274 (342)
T ss_pred -----ecccCChHHHHHHHHHHHHhCCCCCEEEEE
Confidence 222332 358999999999999988773
No 221
>KOG3420 consensus Predicted RNA methylase [Translation, ribosomal structure and biogenesis]
Probab=98.09 E-value=1.1e-05 Score=63.11 Aligned_cols=96 Identities=10% Similarity=0.031 Sum_probs=69.4
Q ss_pred CCCcEEEEcCcccHHHHHHHHHCCCceEEEEECChHHHHHHHHhcCccccccCCCCcEEEEEcccccc-ccCCCeeEEEE
Q 035593 77 PPGPIGILGFGAGSAARLILDLYPEAVIHGWELDPSVIKVAREFFALEKLEKSYPDRLFVYVGNALKA-SLKDGFSGILV 155 (269)
Q Consensus 77 ~~~~VL~iG~G~G~~~~~l~~~~p~~~v~~vEidp~~~~~a~~~~~~~~~~~~~~~rv~~~~~D~~~~-~~~~~yD~I~~ 155 (269)
.++++++||||.|.+.....- +.+..|.++||||+.+++++++..-- .-++.+.++|..+. ...+.||..++
T Consensus 48 Egkkl~DLgcgcGmLs~a~sm-~~~e~vlGfDIdpeALEIf~rNaeEf------EvqidlLqcdildle~~~g~fDtavi 120 (185)
T KOG3420|consen 48 EGKKLKDLGCGCGMLSIAFSM-PKNESVLGFDIDPEALEIFTRNAEEF------EVQIDLLQCDILDLELKGGIFDTAVI 120 (185)
T ss_pred cCcchhhhcCchhhhHHHhhc-CCCceEEeeecCHHHHHHHhhchHHh------hhhhheeeeeccchhccCCeEeeEEe
Confidence 589999999999999955543 34679999999999999999886321 12467888888777 55688999998
Q ss_pred cCCCCCCCCCCCCcHHHHHHHHhhcc
Q 035593 156 DLFSKGSLLSELEDPNTWEKLRQCLR 181 (269)
Q Consensus 156 d~~~~~~~~~~l~~~e~~~~~~~~L~ 181 (269)
|..-+. -..+ ...+|.+...+..+
T Consensus 121 NppFGT-k~~~-aDm~fv~~al~~~~ 144 (185)
T KOG3420|consen 121 NPPFGT-KKKG-ADMEFVSAALKVAS 144 (185)
T ss_pred cCCCCc-cccc-ccHHHHHHHHHHHH
Confidence 854331 1122 34577777666555
No 222
>TIGR02987 met_A_Alw26 type II restriction m6 adenine DNA methyltransferase, Alw26I/Eco31I/Esp3I family. Members of this family are the m6-adenine DNA methyltransferase protein, or domain of a fusion protein that also carries m5 cytosine methyltransferase activity, of type II restriction systems of the Alw26I/Eco31I/Esp3I family. A methyltransferase of this family is alway accompanied by a type II restriction endonuclease from the Alw26I/Eco31I/Esp3I family (TIGR02986) and by an adenine-specific modification methyltransferase. Members of this family are unusual in that regions of similarity to homologs outside this family are circularly permuted.
Probab=98.03 E-value=2.1e-05 Score=75.43 Aligned_cols=77 Identities=19% Similarity=0.070 Sum_probs=56.7
Q ss_pred CCCcEEEEcCcccHHHHHHHHHCC--------CceEEEEECChHHHHHHHHhcCccccccCCCCcEEEEEcccccc----
Q 035593 77 PPGPIGILGFGAGSAARLILDLYP--------EAVIHGWELDPSVIKVAREFFALEKLEKSYPDRLFVYVGNALKA---- 144 (269)
Q Consensus 77 ~~~~VL~iG~G~G~~~~~l~~~~p--------~~~v~~vEidp~~~~~a~~~~~~~~~~~~~~~rv~~~~~D~~~~---- 144 (269)
...+|||.|||+|.+...++++.+ ..+++++|||+..++.|+..+.... ...+.++.+|....
T Consensus 31 ~~~~ilDP~cGsG~fl~~~~~~~~~~~~~~~~~~~i~g~DId~~a~~~a~~~l~~~~-----~~~~~i~~~d~l~~~~~~ 105 (524)
T TIGR02987 31 TKTKIIDPCCGDGRLIAALLKKNEEINYFKEVELNIYFADIDKTLLKRAKKLLGEFA-----LLEINVINFNSLSYVLLN 105 (524)
T ss_pred cceEEEeCCCCccHHHHHHHHHHHhcCCcccceeeeeeechhHHHHHHHHHHHhhcC-----CCCceeeecccccccccc
Confidence 356899999999999998887653 2589999999999999998764221 12356676665532
Q ss_pred --ccCCCeeEEEEcCC
Q 035593 145 --SLKDGFSGILVDLF 158 (269)
Q Consensus 145 --~~~~~yD~I~~d~~ 158 (269)
...++||+|+.+++
T Consensus 106 ~~~~~~~fD~IIgNPP 121 (524)
T TIGR02987 106 IESYLDLFDIVITNPP 121 (524)
T ss_pred cccccCcccEEEeCCC
Confidence 12358999998753
No 223
>PF01739 CheR: CheR methyltransferase, SAM binding domain; InterPro: IPR022642 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Flagellated bacteria swim towards favourable chemicals and away from deleterious ones. Sensing of chemoeffector gradients involves chemotaxis receptors, transmembrane (TM) proteins that detect stimuli through their periplasmic domains and transduce the signals via their cytoplasmic domains []. Signalling outputs from these receptors are influenced both by the binding of the chemoeffector ligand to their periplasmic domains and by methylation of specific glutamate residues on their cytoplasmic domains. Methylation is catalysed by CheR, an S-adenosylmethionine-dependent methyltransferase [], which reversibly methylates specific glutamate residues within a coiled coil region, to form gamma-glutamyl methyl ester residues [, ]. The structure of the Salmonella typhimurium chemotaxis receptor methyltransferase CheR, bound to S-adenosylhomocysteine, has been determined to a resolution of 2.0 A []. The structure reveals CheR to be a two-domain protein, with a smaller N-terminal helical domain linked via a single polypeptide connection to a larger C-terminal alpha/beta domain. The C-terminal domain has the characteristics of a nucleotide-binding fold, with an insertion of a small anti-parallel beta-sheet subdomain. The S-adenosylhomocysteine-binding site is formed mainly by the large domain, with contributions from residues within the N-terminal domain and the linker region []. CheR proteins are part of the chemotaxis signaling mechanism which methylates the chemotaxis receptor at specific glutamate residues. This entry refers to the C-terminal SAM-binding domain of the CherR-type MCP methyltransferases, which are found in bacteria, archaea and green plants. This entry is found in association with PF03705 from PFAM. ; PDB: 1AF7_A 1BC5_A.
Probab=97.96 E-value=3.8e-05 Score=64.13 Aligned_cols=112 Identities=21% Similarity=0.213 Sum_probs=64.8
Q ss_pred CCCcEEEEcCccc----HHHHHHHHHC----C-CceEEEEECChHHHHHHHHhc-------Ccccc-----------cc-
Q 035593 77 PPGPIGILGFGAG----SAARLILDLY----P-EAVIHGWELDPSVIKVAREFF-------ALEKL-----------EK- 128 (269)
Q Consensus 77 ~~~~VL~iG~G~G----~~~~~l~~~~----p-~~~v~~vEidp~~~~~a~~~~-------~~~~~-----------~~- 128 (269)
++-+|+..||++| +++..+.+.. + ..+|.+.|||+.+++.|++-. +++.. +.
T Consensus 31 ~~lrIWSagCStGeE~YSlAmll~e~~~~~~~~~~~I~atDi~~~~L~~Ar~G~Y~~~~~~~~~~~~~~ryf~~~~~~~~ 110 (196)
T PF01739_consen 31 RPLRIWSAGCSTGEEPYSLAMLLLELLPGALGWDFRILATDISPSALEKARAGIYPERSLRGLPPAYLRRYFTERDGGGY 110 (196)
T ss_dssp S-EEEEETT-TTTHHHHHHHHHHHHHH-S-TT-SEEEEEEES-HHHHHHHHHTEEEGGGGTTS-HHHHHHHEEEE-CCCT
T ss_pred CCeEEEECCCCCChhHHHHHHHHHHHhcccCCCceEEEEEECCHHHHHHHHhCCCCHHHHhhhHHHHHHHhccccCCCce
Confidence 4679999999999 4555555522 2 469999999999999997421 01000 00
Q ss_pred ----CCCCcEEEEEccccc-cccCCCeeEEEEcCCCCCCCCCCCCcHHHHHHHHhhccCCcEEEEEe
Q 035593 129 ----SYPDRLFVYVGNALK-ASLKDGFSGILVDLFSKGSLLSELEDPNTWEKLRQCLRKGGRIMVNV 190 (269)
Q Consensus 129 ----~~~~rv~~~~~D~~~-~~~~~~yD~I~~d~~~~~~~~~~l~~~e~~~~~~~~L~pgG~l~~~~ 190 (269)
.-..+|++...|..+ ....+.||+|++=-. -.+-..-.....++.+.+.|+|||.|++-.
T Consensus 111 ~v~~~lr~~V~F~~~NL~~~~~~~~~fD~I~CRNV--lIYF~~~~~~~vl~~l~~~L~pgG~L~lG~ 175 (196)
T PF01739_consen 111 RVKPELRKMVRFRRHNLLDPDPPFGRFDLIFCRNV--LIYFDPETQQRVLRRLHRSLKPGGYLFLGH 175 (196)
T ss_dssp TE-HHHHTTEEEEE--TT-S------EEEEEE-SS--GGGS-HHHHHHHHHHHGGGEEEEEEEEE-T
T ss_pred eEChHHcCceEEEecccCCCCcccCCccEEEecCE--EEEeCHHHHHHHHHHHHHHcCCCCEEEEec
Confidence 012478888888887 366789999997210 000111123689999999999999999843
No 224
>PRK11760 putative 23S rRNA C2498 ribose 2'-O-ribose methyltransferase; Provisional
Probab=97.94 E-value=0.00023 Score=63.81 Aligned_cols=97 Identities=13% Similarity=0.149 Sum_probs=73.6
Q ss_pred CCCCCcEEEEcCcccHHHHHHHHHCCCceEEEEECChHHHHHHHHhcCccccccCCCCcEEEEEcccccccc-CCCeeEE
Q 035593 75 ILPPGPIGILGFGAGSAARLILDLYPEAVIHGWELDPSVIKVAREFFALEKLEKSYPDRLFVYVGNALKASL-KDGFSGI 153 (269)
Q Consensus 75 l~~~~~VL~iG~G~G~~~~~l~~~~p~~~v~~vEidp~~~~~a~~~~~~~~~~~~~~~rv~~~~~D~~~~~~-~~~yD~I 153 (269)
+.+..++|||||++|..+..++++ +.+|++||..+-. ..-. .+++|+.+.+|+..+.+ .+.+|++
T Consensus 209 ~~~g~~vlDLGAsPGGWT~~L~~r--G~~V~AVD~g~l~----~~L~--------~~~~V~h~~~d~fr~~p~~~~vDwv 274 (357)
T PRK11760 209 LAPGMRAVDLGAAPGGWTYQLVRR--GMFVTAVDNGPMA----QSLM--------DTGQVEHLRADGFKFRPPRKNVDWL 274 (357)
T ss_pred cCCCCEEEEeCCCCcHHHHHHHHc--CCEEEEEechhcC----Hhhh--------CCCCEEEEeccCcccCCCCCCCCEE
Confidence 456889999999999999999984 6799999966521 1111 26899999999999843 7789999
Q ss_pred EEcCCCCCCCCCCCCcHHHHHHHHhhccCC--cEEEEEecCC
Q 035593 154 LVDLFSKGSLLSELEDPNTWEKLRQCLRKG--GRIMVNVGGS 193 (269)
Q Consensus 154 ~~d~~~~~~~~~~l~~~e~~~~~~~~L~pg--G~l~~~~~~~ 193 (269)
++|+... .....+.+.+.|..| ...++|+--+
T Consensus 275 VcDmve~--------P~rva~lm~~Wl~~g~cr~aIfnLKlp 308 (357)
T PRK11760 275 VCDMVEK--------PARVAELMAQWLVNGWCREAIFNLKLP 308 (357)
T ss_pred EEecccC--------HHHHHHHHHHHHhcCcccEEEEEEEcC
Confidence 9997644 246777777888766 4677777433
No 225
>PF12147 Methyltransf_20: Putative methyltransferase; InterPro: IPR022744 This C-terminal region is found in bacteria and eukaryotes and is approximately 110 amino acids in length. It is found in association with PF00561 from PFAM. Many members are annotated as being lysophospholipases, and others as alpha-beta hydrolase fold-containing proteins. This domain belongs to the S-adenosyl-L-methionine-dependent methyltransferases superfamily.
Probab=97.93 E-value=0.00014 Score=63.63 Aligned_cols=108 Identities=20% Similarity=0.193 Sum_probs=81.1
Q ss_pred CCCcEEEEcCcccHHHHHHHHHCCC--ceEEEEECChHHHHHHHHhcCccccccCCCCcEEEEEcccccc----ccCCCe
Q 035593 77 PPGPIGILGFGAGSAARLILDLYPE--AVIHGWELDPSVIKVAREFFALEKLEKSYPDRLFVYVGNALKA----SLKDGF 150 (269)
Q Consensus 77 ~~~~VL~iG~G~G~~~~~l~~~~p~--~~v~~vEidp~~~~~a~~~~~~~~~~~~~~~rv~~~~~D~~~~----~~~~~y 150 (269)
.+-+||||.||.|.....++...|. .+|...|.+|..++..++...-..+ ..-+++.++|+++. ....+.
T Consensus 135 ~pvrIlDIAaG~GRYvlDal~~~~~~~~~i~LrDys~~Nv~~g~~li~~~gL----~~i~~f~~~dAfd~~~l~~l~p~P 210 (311)
T PF12147_consen 135 RPVRILDIAAGHGRYVLDALEKHPERPDSILLRDYSPINVEKGRALIAERGL----EDIARFEQGDAFDRDSLAALDPAP 210 (311)
T ss_pred CceEEEEeccCCcHHHHHHHHhCCCCCceEEEEeCCHHHHHHHHHHHHHcCC----ccceEEEecCCCCHhHhhccCCCC
Confidence 4789999999999999888888886 7999999999999999887643322 23469999999986 345678
Q ss_pred eEEEEc-CCCCCCCCCCCCcHHHHHHHHhhccCCcEEEEEe
Q 035593 151 SGILVD-LFSKGSLLSELEDPNTWEKLRQCLRKGGRIMVNV 190 (269)
Q Consensus 151 D~I~~d-~~~~~~~~~~l~~~e~~~~~~~~L~pgG~l~~~~ 190 (269)
+++++. ++.- .+..-.-...+..+.++|.|||.++...
T Consensus 211 ~l~iVsGL~El--F~Dn~lv~~sl~gl~~al~pgG~lIyTg 249 (311)
T PF12147_consen 211 TLAIVSGLYEL--FPDNDLVRRSLAGLARALEPGGYLIYTG 249 (311)
T ss_pred CEEEEecchhh--CCcHHHHHHHHHHHHHHhCCCcEEEEcC
Confidence 888763 2211 1211112457888999999999998865
No 226
>COG1352 CheR Methylase of chemotaxis methyl-accepting proteins [Cell motility and secretion / Signal transduction mechanisms]
Probab=97.93 E-value=5.7e-05 Score=65.97 Aligned_cols=111 Identities=22% Similarity=0.221 Sum_probs=71.9
Q ss_pred CCcEEEEcCccc----HHHHHHHHHCC-----CceEEEEECChHHHHHHHHhc-C-------ccc-c-c----cCC----
Q 035593 78 PGPIGILGFGAG----SAARLILDLYP-----EAVIHGWELDPSVIKVAREFF-A-------LEK-L-E----KSY---- 130 (269)
Q Consensus 78 ~~~VL~iG~G~G----~~~~~l~~~~p-----~~~v~~vEidp~~~~~a~~~~-~-------~~~-~-~----~~~---- 130 (269)
+-+|.-.||++| +++..|.+..+ ..+|+|.|||..+++.|+.-. + ++. + . ...
T Consensus 97 ~irIWSaaCStGEEpYSiAm~l~e~~~~~~~~~~~I~AtDId~~~L~~A~~G~Y~~~~~~~~~~~~~~~ryF~~~~~~~y 176 (268)
T COG1352 97 PIRIWSAACSTGEEPYSLAMLLLEALGKLAGFRVKILATDIDLSVLEKARAGIYPSRELLRGLPPELLRRYFERGGDGSY 176 (268)
T ss_pred ceEEEecCcCCCccHHHHHHHHHHHhccccCCceEEEEEECCHHHHHHHhcCCCChhHhhccCCHHHHhhhEeecCCCcE
Confidence 678999999999 67777777765 479999999999999997422 1 000 0 0 000
Q ss_pred ------CCcEEEEEccccccc-cCCCeeEEEEcCCCCCCCCCCCCcHHHHHHHHhhccCCcEEEEEe
Q 035593 131 ------PDRLFVYVGNALKAS-LKDGFSGILVDLFSKGSLLSELEDPNTWEKLRQCLRKGGRIMVNV 190 (269)
Q Consensus 131 ------~~rv~~~~~D~~~~~-~~~~yD~I~~d~~~~~~~~~~l~~~e~~~~~~~~L~pgG~l~~~~ 190 (269)
...|.+...|...-. ..+.||+|+|= +--.+-..-...+.++.++..|+|||+|.+-.
T Consensus 177 ~v~~~ir~~V~F~~~NLl~~~~~~~~fD~IfCR--NVLIYFd~~~q~~il~~f~~~L~~gG~LflG~ 241 (268)
T COG1352 177 RVKEELRKMVRFRRHNLLDDSPFLGKFDLIFCR--NVLIYFDEETQERILRRFADSLKPGGLLFLGH 241 (268)
T ss_pred EEChHHhcccEEeecCCCCCccccCCCCEEEEc--ceEEeeCHHHHHHHHHHHHHHhCCCCEEEEcc
Confidence 123444444443322 45679999962 00001112234689999999999999998843
No 227
>PF05958 tRNA_U5-meth_tr: tRNA (Uracil-5-)-methyltransferase; InterPro: IPR010280 This family consists of (uracil-5-)-methyltransferases 2.1.1.35 from EC from bacteria, archaea and eukaryotes. A 5-methyluridine (m(5)U) residue at position 54 is a conserved feature of bacterial and eukaryotic tRNAs. The methylation of U54 is catalysed by the tRNA(m5U54)methyltransferase, which in Saccharomyces cerevisiae is encoded by the nonessential TRM2 gene. It is thought that tRNA modification enzymes might have a role in tRNA maturation not necessarily linked to their known catalytic activity []. This protein family also contains the 23SrRNA methyltransferases, first proposed to be RNA methyltransferases by homology to the TrmA family. The member from Escherichia coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA [].; GO: 0008173 RNA methyltransferase activity, 0006396 RNA processing; PDB: 2VS1_A 2JJQ_A 2BH2_A 1UWV_A 3BT7_B.
Probab=97.87 E-value=0.00012 Score=66.67 Aligned_cols=87 Identities=21% Similarity=0.198 Sum_probs=60.1
Q ss_pred CcEEEEcCcccHHHHHHHHHCCCceEEEEECChHHHHHHHHhcCccccccCCCCcEEEEEcccccc-c------------
Q 035593 79 GPIGILGFGAGSAARLILDLYPEAVIHGWELDPSVIKVAREFFALEKLEKSYPDRLFVYVGNALKA-S------------ 145 (269)
Q Consensus 79 ~~VL~iG~G~G~~~~~l~~~~p~~~v~~vEidp~~~~~a~~~~~~~~~~~~~~~rv~~~~~D~~~~-~------------ 145 (269)
.+|||+-||.|.++..+++. ..+|++||+++++++.|++++..+. -.+++++.+++.++ .
T Consensus 198 ~~vlDlycG~G~fsl~la~~--~~~V~gvE~~~~av~~A~~Na~~N~-----i~n~~f~~~~~~~~~~~~~~~r~~~~~~ 270 (352)
T PF05958_consen 198 GDVLDLYCGVGTFSLPLAKK--AKKVIGVEIVEEAVEDARENAKLNG-----IDNVEFIRGDAEDFAKALAKAREFNRLK 270 (352)
T ss_dssp TEEEEES-TTTCCHHHHHCC--SSEEEEEES-HHHHHHHHHHHHHTT-------SEEEEE--SHHCCCHHCCS-GGTTGG
T ss_pred CcEEEEeecCCHHHHHHHhh--CCeEEEeeCCHHHHHHHHHHHHHcC-----CCcceEEEeeccchhHHHHhhHHHHhhh
Confidence 37999999999999999873 5699999999999999999987654 35799999887654 0
Q ss_pred ----cCCCeeEEEEcCCCCCCCCCCCCcHHHHHHHHh
Q 035593 146 ----LKDGFSGILVDLFSKGSLLSELEDPNTWEKLRQ 178 (269)
Q Consensus 146 ----~~~~yD~I~~d~~~~~~~~~~l~~~e~~~~~~~ 178 (269)
....+|+|++|++-.. ....+++.+.+
T Consensus 271 ~~~~~~~~~d~vilDPPR~G------~~~~~~~~~~~ 301 (352)
T PF05958_consen 271 GIDLKSFKFDAVILDPPRAG------LDEKVIELIKK 301 (352)
T ss_dssp GS-GGCTTESEEEE---TT-------SCHHHHHHHHH
T ss_pred hhhhhhcCCCEEEEcCCCCC------chHHHHHHHhc
Confidence 1236899999976543 13566666643
No 228
>TIGR01444 fkbM_fam methyltransferase, FkbM family. Members of this family are characterized by two well-conserved short regions separated by a variable in both sequence and length. The first of the two regions is found in a large number of proteins outside this subfamily, a number of which have been characterized as methyltransferases. One member of the present family, FkbM, was shown to be required for a specific methylation in the biosynthesis of the immunosuppressant FK506 in Streptomyces strain MA6548.
Probab=97.85 E-value=5e-05 Score=59.68 Aligned_cols=58 Identities=12% Similarity=0.088 Sum_probs=47.7
Q ss_pred cEEEEcCcccHHHHHHHHHCCCceEEEEECChHHHHHHHHhcCccccccCCCCcEEEEEcccc
Q 035593 80 PIGILGFGAGSAARLILDLYPEAVIHGWELDPSVIKVAREFFALEKLEKSYPDRLFVYVGNAL 142 (269)
Q Consensus 80 ~VL~iG~G~G~~~~~l~~~~p~~~v~~vEidp~~~~~a~~~~~~~~~~~~~~~rv~~~~~D~~ 142 (269)
.++|||||.|..+..+++..+..+|+++|++|.+.+.+++++..+. -++++++.....
T Consensus 1 ~vlDiGa~~G~~~~~~~~~~~~~~v~~~E~~~~~~~~l~~~~~~n~-----~~~v~~~~~al~ 58 (143)
T TIGR01444 1 VVIDVGANIGDTSLYFARKGAEGRVIAFEPLPDAYEILEENVKLNN-----LPNVVLLNAAVG 58 (143)
T ss_pred CEEEccCCccHHHHHHHHhCCCCEEEEEecCHHHHHHHHHHHHHcC-----CCcEEEEEeeee
Confidence 3899999999999999998888899999999999999999875432 135777765544
No 229
>KOG1596 consensus Fibrillarin and related nucleolar RNA-binding proteins [RNA processing and modification]
Probab=97.81 E-value=0.00042 Score=58.86 Aligned_cols=127 Identities=18% Similarity=0.310 Sum_probs=88.7
Q ss_pred CCCCCCcEEEEcCcccHHHHHHHHHC-CCceEEEEECChH----HHHHHHHhcCccccccCCCCcEEEEEcccccc----
Q 035593 74 PILPPGPIGILGFGAGSAARLILDLY-PEAVIHGWELDPS----VIKVAREFFALEKLEKSYPDRLFVYVGNALKA---- 144 (269)
Q Consensus 74 ~l~~~~~VL~iG~G~G~~~~~l~~~~-p~~~v~~vEidp~----~~~~a~~~~~~~~~~~~~~~rv~~~~~D~~~~---- 144 (269)
.+.|..+||-||+++|....++.... |..-|++||.++. .+.+|+++ +++--|+.||+.-
T Consensus 153 hikpGsKVLYLGAasGttVSHvSDiVGpeG~VYAVEfs~rsGRdL~nmAkkR-----------tNiiPIiEDArhP~KYR 221 (317)
T KOG1596|consen 153 HIKPGSKVLYLGAASGTTVSHVSDIVGPEGCVYAVEFSHRSGRDLINMAKKR-----------TNIIPIIEDARHPAKYR 221 (317)
T ss_pred eecCCceEEEeeccCCceeehhhcccCCCceEEEEEecccchHHHHHHhhcc-----------CCceeeeccCCCchhee
Confidence 46689999999999999999888753 6778999999874 35555553 4677788999864
Q ss_pred ccCCCeeEEEEcCCCCCCCCCCCCcHHHHHHHHhhccCCcEEEEEecCCCccccccccchhHHHHHHHHHHHHH-hc
Q 035593 145 SLKDGFSGILVDLFSKGSLLSELEDPNTWEKLRQCLRKGGRIMVNVGGSCVEAEDSRRDGKVVMEATLKAMHKV-FG 220 (269)
Q Consensus 145 ~~~~~yD~I~~d~~~~~~~~~~l~~~e~~~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-F~ 220 (269)
-.-...|+||.|+..++. ..-.--++...||+||-+++.+-..|-+ .....+..+....+.|++- +.
T Consensus 222 mlVgmVDvIFaDvaqpdq------~RivaLNA~~FLk~gGhfvisikancid---stv~ae~vFa~Ev~klqee~lk 289 (317)
T KOG1596|consen 222 MLVGMVDVIFADVAQPDQ------ARIVALNAQYFLKNGGHFVISIKANCID---STVFAEAVFAAEVKKLQEEQLK 289 (317)
T ss_pred eeeeeEEEEeccCCCchh------hhhhhhhhhhhhccCCeEEEEEeccccc---ccccHHHHHHHHHHHHHHhccC
Confidence 234588999998765531 2233345667799999999877655532 1122345667777777764 53
No 230
>PF01189 Nol1_Nop2_Fmu: NOL1/NOP2/sun family; InterPro: IPR001678 This domain is found in archaeal, bacterial and eukaryotic proteins. In the archaea and bacteria, they are annotated as putative nucleolar protein, Sun (Fmu) family protein or tRNA/rRNA cytosine-C5-methylase. The majority have the S-adenosyl methionine (SAM) binding domain and are related to Escherichia coli Fmu (Sun) protein (16S rRNA m5C 967 methyltransferase) whose structure has been determined []. In the eukaryota, the majority are annotated as being 'hypothetical protein', nucleolar protein or the Nop2/Sun (Fmu) family. Unlike their bacterial homologues, few of the eukaryotic members in this family have a the SAM binding signature. Despite this, Saccharomyces cerevisiae (Baker's yeast) Nop2p is a probable RNA m5C methyltransferase []. It is essential for processing and maturation of 27S pre-rRNA and large ribosomal subunit biogenesis []; localized to the nucleolus and is essential for viability []. Reduced Nop2p expression limits yeast growth and decreases levels of mature 60S ribosomal subunits while altering rRNA processing []. There is substantial identity between Nop2p and Homo sapiens (Human) p120 (NOL1), which is also called the proliferation-associated nucleolar antigen [, ].; PDB: 3M4X_A 2FRX_B 2YXL_A 1IXK_A 1SQG_A 1SQF_A 3M6U_B 3M6V_B 3M6W_A 3M6X_A ....
Probab=97.80 E-value=0.00013 Score=64.40 Aligned_cols=135 Identities=16% Similarity=0.170 Sum_probs=97.2
Q ss_pred CCCCcEEEEcCcccHHHHHHHHHCC-CceEEEEECChHHHHHHHHhcCccccccCCCCcEEEEEcccccc---ccCCCee
Q 035593 76 LPPGPIGILGFGAGSAARLILDLYP-EAVIHGWELDPSVIKVAREFFALEKLEKSYPDRLFVYVGNALKA---SLKDGFS 151 (269)
Q Consensus 76 ~~~~~VL~iG~G~G~~~~~l~~~~p-~~~v~~vEidp~~~~~a~~~~~~~~~~~~~~~rv~~~~~D~~~~---~~~~~yD 151 (269)
.+..+|||+++|.|+=+.+++.... ...|+++|+++.-+...++++..-+ ...+.++..|++.. .....||
T Consensus 84 ~~~~~VLD~CAapGgKt~~la~~~~~~g~i~A~D~~~~Rl~~l~~~~~r~g-----~~~v~~~~~D~~~~~~~~~~~~fd 158 (283)
T PF01189_consen 84 QPGERVLDMCAAPGGKTTHLAELMGNKGEIVANDISPKRLKRLKENLKRLG-----VFNVIVINADARKLDPKKPESKFD 158 (283)
T ss_dssp TTTSEEEESSCTTSHHHHHHHHHTTTTSEEEEEESSHHHHHHHHHHHHHTT------SSEEEEESHHHHHHHHHHTTTEE
T ss_pred cccccccccccCCCCceeeeeecccchhHHHHhccCHHHHHHHHHHHHhcC-----CceEEEEeeccccccccccccccc
Confidence 4678899999999999999998876 6799999999999988887753211 34688888999887 3344699
Q ss_pred EEEEcCCCCCC-C---CCC--------------CCcHHHHHHHHhhc----cCCcEEEEEecCCCccccccccchhHHHH
Q 035593 152 GILVDLFSKGS-L---LSE--------------LEDPNTWEKLRQCL----RKGGRIMVNVGGSCVEAEDSRRDGKVVME 209 (269)
Q Consensus 152 ~I~~d~~~~~~-~---~~~--------------l~~~e~~~~~~~~L----~pgG~l~~~~~~~~~~~~~~~~~~~~~~~ 209 (269)
.|++|++-... . .+. -...+.++.+.+.+ +|||+++....+..+. -..
T Consensus 159 ~VlvDaPCSg~G~i~r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~~~~~~k~gG~lvYsTCS~~~e----------ENE 228 (283)
T PF01189_consen 159 RVLVDAPCSGLGTIRRNPDIKWRRSPEDIEKLAELQREILDNAAKLLNIDFKPGGRLVYSTCSLSPE----------ENE 228 (283)
T ss_dssp EEEEECSCCCGGGTTTCTTHHHHE-TTHHHHHHHHHHHHHHHHHHCEHHHBEEEEEEEEEESHHHGG----------GTH
T ss_pred hhhcCCCccchhhhhhccchhhcccccccchHHHHHHHHHHHHHHhhcccccCCCeEEEEeccHHHH----------HHH
Confidence 99999865532 1 110 02357899999999 9999999988765431 123
Q ss_pred HHHHHHHHHhcCceEEE
Q 035593 210 ATLKAMHKVFGKKLYVL 226 (269)
Q Consensus 210 ~~~~~l~~~F~~~v~~~ 226 (269)
.+++.+-+.++ .....
T Consensus 229 ~vV~~fl~~~~-~~~l~ 244 (283)
T PF01189_consen 229 EVVEKFLKRHP-DFELV 244 (283)
T ss_dssp HHHHHHHHHST-SEEEE
T ss_pred HHHHHHHHhCC-CcEEE
Confidence 45555555564 34443
No 231
>PF08123 DOT1: Histone methylation protein DOT1 ; InterPro: IPR013110 The DOT1 domain regulates gene expression by methylating histone H3 []. H3 methylation by DOT1 has been shown to be required for the DNA damage checkpoint in yeast [].; GO: 0018024 histone-lysine N-methyltransferase activity; PDB: 4ER3_A 4ER6_A 4EQZ_A 1NW3_A 3UWP_A 4ER5_A 3QOX_A 3SX0_A 4ER7_A 3SR4_A ....
Probab=97.80 E-value=9.7e-05 Score=62.13 Aligned_cols=119 Identities=17% Similarity=0.174 Sum_probs=64.8
Q ss_pred hHHHHHhcCCCCCCCCcEEEEcCcccHHHHHHHHHCCCceEEEEECChHHHHHHHHhcC-c----cccccCCCCcEEEEE
Q 035593 64 TYFDAFATLPPILPPGPIGILGFGAGSAARLILDLYPEAVIHGWELDPSVIKVAREFFA-L----EKLEKSYPDRLFVYV 138 (269)
Q Consensus 64 ~y~~~~~~~~~l~~~~~VL~iG~G~G~~~~~l~~~~p~~~v~~vEidp~~~~~a~~~~~-~----~~~~~~~~~rv~~~~ 138 (269)
.....++....+.+....+|||||.|....+++-..+-.+..+||+.|...+.|+.... + ..++ ....+++++.
T Consensus 29 ~~~~~il~~~~l~~~dvF~DlGSG~G~~v~~aal~~~~~~~~GIEi~~~~~~~a~~~~~~~~~~~~~~g-~~~~~v~l~~ 107 (205)
T PF08123_consen 29 EFVSKILDELNLTPDDVFYDLGSGVGNVVFQAALQTGCKKSVGIEILPELHDLAEELLEELKKRMKHYG-KRPGKVELIH 107 (205)
T ss_dssp HHHHHHHHHTT--TT-EEEEES-TTSHHHHHHHHHH--SEEEEEE-SHHHHHHHHHHHHHHHHHHHHCT-B---EEEEEC
T ss_pred HHHHHHHHHhCCCCCCEEEECCCCCCHHHHHHHHHcCCcEEEEEEechHHHHHHHHHHHHHHHHHHHhh-cccccceeec
Confidence 34444443334677889999999999998877765443469999999999988864321 0 0000 1245799999
Q ss_pred cccccc----ccCCCeeEEEEcCCCCCCCCCCCCcHHHHHHHHhhccCCcEEEE
Q 035593 139 GNALKA----SLKDGFSGILVDLFSKGSLLSELEDPNTWEKLRQCLRKGGRIMV 188 (269)
Q Consensus 139 ~D~~~~----~~~~~yD~I~~d~~~~~~~~~~l~~~e~~~~~~~~L~pgG~l~~ 188 (269)
+|+.+. ..-..-|+|+++.+. ..+. ....+.+....||+|-.++.
T Consensus 108 gdfl~~~~~~~~~s~AdvVf~Nn~~---F~~~--l~~~L~~~~~~lk~G~~IIs 156 (205)
T PF08123_consen 108 GDFLDPDFVKDIWSDADVVFVNNTC---FDPD--LNLALAELLLELKPGARIIS 156 (205)
T ss_dssp S-TTTHHHHHHHGHC-SEEEE--TT---T-HH--HHHHHHHHHTTS-TT-EEEE
T ss_pred cCccccHhHhhhhcCCCEEEEeccc---cCHH--HHHHHHHHHhcCCCCCEEEE
Confidence 998764 112467999986331 1111 23444556677887666543
No 232
>KOG0822 consensus Protein kinase inhibitor [Cell cycle control, cell division, chromosome partitioning]
Probab=97.71 E-value=9.5e-05 Score=69.02 Aligned_cols=109 Identities=17% Similarity=0.170 Sum_probs=83.2
Q ss_pred CCcEEEEcCcccHHHHHHHHH----CCCceEEEEECChHHHHHHHHhcCccccccCCCCcEEEEEccccccccC-CCeeE
Q 035593 78 PGPIGILGFGAGSAARLILDL----YPEAVIHGWELDPSVIKVAREFFALEKLEKSYPDRLFVYVGNALKASLK-DGFSG 152 (269)
Q Consensus 78 ~~~VL~iG~G~G~~~~~l~~~----~p~~~v~~vEidp~~~~~a~~~~~~~~~~~~~~~rv~~~~~D~~~~~~~-~~yD~ 152 (269)
...|+.+|+|-|-+....++. ....++.+||-+|..+-..+. .....| +.+|+++..|+|.+..+ ++.|+
T Consensus 368 ~tVimvlGaGRGPLv~~~lkaa~~~~RkVklyavEKNPNAivtL~~-~n~~~W----~~~Vtii~~DMR~w~ap~eq~DI 442 (649)
T KOG0822|consen 368 TTVIMVLGAGRGPLVDASLKAAEETDRKVKLYAVEKNPNAIVTLQN-RNFECW----DNRVTIISSDMRKWNAPREQADI 442 (649)
T ss_pred eEEEEEecCCCccHHHHHHHHHHHhcCceEEEEEecCcchhhhhhh-hchhhh----cCeeEEEeccccccCCchhhccc
Confidence 346888999999988776653 236799999999998877655 344455 47999999999999654 89999
Q ss_pred EEEcCCCCCCCCCCCCcHHHHHHHHhhccCCcEEEEEecCC
Q 035593 153 ILVDLFSKGSLLSELEDPNTWEKLRQCLRKGGRIMVNVGGS 193 (269)
Q Consensus 153 I~~d~~~~~~~~~~l~~~e~~~~~~~~L~pgG~l~~~~~~~ 193 (269)
|++.+-.. ....-.++|.+..+.+.|||+|+.+=....+
T Consensus 443 ~VSELLGS--FGDNELSPECLDG~q~fLkpdgIsIP~sYtS 481 (649)
T KOG0822|consen 443 IVSELLGS--FGDNELSPECLDGAQKFLKPDGISIPSSYTS 481 (649)
T ss_pred hHHHhhcc--ccCccCCHHHHHHHHhhcCCCceEccchhhh
Confidence 99765432 3333347899999999999999887654444
No 233
>COG0116 Predicted N6-adenine-specific DNA methylase [DNA replication, recombination, and repair]
Probab=97.69 E-value=0.00019 Score=65.21 Aligned_cols=119 Identities=18% Similarity=0.090 Sum_probs=82.3
Q ss_pred HHhcCCCCCCCCcEEEEcCcccHHHHHHHHHCCC--------------------------------c-------eEEEEE
Q 035593 68 AFATLPPILPPGPIGILGFGAGSAARLILDLYPE--------------------------------A-------VIHGWE 108 (269)
Q Consensus 68 ~~~~~~~l~~~~~VL~iG~G~G~~~~~l~~~~p~--------------------------------~-------~v~~vE 108 (269)
+|+.+....+...++|-=||+|+++.+.+-..++ + .+.++|
T Consensus 182 Ail~lagw~~~~pl~DPmCGSGTi~IEAAl~~~niAPg~~R~~~f~~w~~~~~~lw~~~~~ea~~~a~~~~~~~~~~G~D 261 (381)
T COG0116 182 AILLLAGWKPDEPLLDPMCGSGTILIEAALIAANIAPGLNRRFGFEFWDWFDKDLWDKLREEAEERARRGKELPIIYGSD 261 (381)
T ss_pred HHHHHcCCCCCCccccCCCCccHHHHHHHHhccccCCccccccchhhhhhccHHHHHHHHHHHHHHHhhcCccceEEEec
Confidence 3433333445678999999999999888765432 1 277999
Q ss_pred CChHHHHHHHHhcCccccccCCCCcEEEEEccccccccC-CCeeEEEEcCCCCCCCCCCCC----cHHHHHHHHhhccCC
Q 035593 109 LDPSVIKVAREFFALEKLEKSYPDRLFVYVGNALKASLK-DGFSGILVDLFSKGSLLSELE----DPNTWEKLRQCLRKG 183 (269)
Q Consensus 109 idp~~~~~a~~~~~~~~~~~~~~~rv~~~~~D~~~~~~~-~~yD~I~~d~~~~~~~~~~l~----~~e~~~~~~~~L~pg 183 (269)
||+.+++.|+.+....+ ..+.+++.++|+..+..+ +.+|+||++++-......+-. -.+|.+.+++.++--
T Consensus 262 id~r~i~~Ak~NA~~AG----v~d~I~f~~~d~~~l~~~~~~~gvvI~NPPYGeRlg~~~~v~~LY~~fg~~lk~~~~~w 337 (381)
T COG0116 262 IDPRHIEGAKANARAAG----VGDLIEFKQADATDLKEPLEEYGVVISNPPYGERLGSEALVAKLYREFGRTLKRLLAGW 337 (381)
T ss_pred CCHHHHHHHHHHHHhcC----CCceEEEEEcchhhCCCCCCcCCEEEeCCCcchhcCChhhHHHHHHHHHHHHHHHhcCC
Confidence 99999999998864322 246799999999999544 899999998654433332211 134555666666666
Q ss_pred cEEEEEe
Q 035593 184 GRIMVNV 190 (269)
Q Consensus 184 G~l~~~~ 190 (269)
+.+++..
T Consensus 338 s~~v~tt 344 (381)
T COG0116 338 SRYVFTT 344 (381)
T ss_pred ceEEEEc
Confidence 6776644
No 234
>KOG2940 consensus Predicted methyltransferase [General function prediction only]
Probab=97.69 E-value=5.7e-05 Score=63.64 Aligned_cols=104 Identities=13% Similarity=0.082 Sum_probs=79.6
Q ss_pred CCcEEEEcCcccHHHHHHHHHCCCceEEEEECChHHHHHHHHhcCccccccCCCCcEEEEEcccccc-ccCCCeeEEEEc
Q 035593 78 PGPIGILGFGAGSAARLILDLYPEAVIHGWELDPSVIKVAREFFALEKLEKSYPDRLFVYVGNALKA-SLKDGFSGILVD 156 (269)
Q Consensus 78 ~~~VL~iG~G~G~~~~~l~~~~p~~~v~~vEidp~~~~~a~~~~~~~~~~~~~~~rv~~~~~D~~~~-~~~~~yD~I~~d 156 (269)
.+.+++||||-|.+.+.+... .-.+++.+|.+-.|++.|+.--. + .-.+...++|-... ....++|+|+..
T Consensus 73 fp~a~diGcs~G~v~rhl~~e-~vekli~~DtS~~M~~s~~~~qd-p------~i~~~~~v~DEE~Ldf~ens~DLiisS 144 (325)
T KOG2940|consen 73 FPTAFDIGCSLGAVKRHLRGE-GVEKLIMMDTSYDMIKSCRDAQD-P------SIETSYFVGDEEFLDFKENSVDLIISS 144 (325)
T ss_pred CcceeecccchhhhhHHHHhc-chhheeeeecchHHHHHhhccCC-C------ceEEEEEecchhcccccccchhhhhhh
Confidence 567999999999999999874 24589999999999999987521 1 12456667776665 667899999976
Q ss_pred CCCCCCCCCCCCcHHHHHHHHhhccCCcEEEEEecCC
Q 035593 157 LFSKGSLLSELEDPNTWEKLRQCLRKGGRIMVNVGGS 193 (269)
Q Consensus 157 ~~~~~~~~~~l~~~e~~~~~~~~L~pgG~l~~~~~~~ 193 (269)
+..++ .++ .+..+.+|+..|||+|.|+-.+.+.
T Consensus 145 lslHW--~Nd--LPg~m~~ck~~lKPDg~Fiasmlgg 177 (325)
T KOG2940|consen 145 LSLHW--TND--LPGSMIQCKLALKPDGLFIASMLGG 177 (325)
T ss_pred hhhhh--hcc--CchHHHHHHHhcCCCccchhHHhcc
Confidence 54432 122 3678999999999999999877654
No 235
>TIGR00006 S-adenosyl-methyltransferase MraW. Genetics paper in 1972 links mra cluster to peptidoglycan biosynthesis in E. coli. Seems to be common in proteobacteria.wn.
Probab=97.68 E-value=0.00026 Score=62.89 Aligned_cols=77 Identities=29% Similarity=0.333 Sum_probs=64.4
Q ss_pred CCCCCcEEEEcCcccHHHHHHHHHCCCceEEEEECChHHHHHHHHhcCccccccCCCCcEEEEEcccccc---c---cCC
Q 035593 75 ILPPGPIGILGFGAGSAARLILDLYPEAVIHGWELDPSVIKVAREFFALEKLEKSYPDRLFVYVGNALKA---S---LKD 148 (269)
Q Consensus 75 l~~~~~VL~iG~G~G~~~~~l~~~~p~~~v~~vEidp~~~~~a~~~~~~~~~~~~~~~rv~~~~~D~~~~---~---~~~ 148 (269)
..++..++|.=+|.|..+..+++..++.+|+++|.||.+++.|++.+.-. ..|+++++++..++ . ...
T Consensus 18 ~~~ggiyVD~TlG~GGHS~~iL~~l~~g~vigiD~D~~Al~~ak~~L~~~------~~R~~~i~~nF~~l~~~l~~~~~~ 91 (305)
T TIGR00006 18 IKPDGIYIDCTLGFGGHSKAILEQLGTGRLIGIDRDPQAIAFAKERLSDF------EGRVVLIHDNFANFFEHLDELLVT 91 (305)
T ss_pred cCCCCEEEEeCCCChHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHHhhc------CCcEEEEeCCHHHHHHHHHhcCCC
Confidence 45677899999999999999999877799999999999999999876411 35899999999886 1 235
Q ss_pred CeeEEEEcC
Q 035593 149 GFSGILVDL 157 (269)
Q Consensus 149 ~yD~I~~d~ 157 (269)
++|.|+.|+
T Consensus 92 ~vDgIl~DL 100 (305)
T TIGR00006 92 KIDGILVDL 100 (305)
T ss_pred cccEEEEec
Confidence 799999875
No 236
>PF02005 TRM: N2,N2-dimethylguanosine tRNA methyltransferase; InterPro: IPR002905 This enzyme 2.1.1.32 from EC uses S-adenosyl-L-methionine to methylate tRNA: S-AdoMet + tRNA = S-adenosyl-L-homocysteine + tRNA containing N2-methylguanine The TRM1 gene of Saccharomyces cerevisiae is necessary for the N2,N2-dimethylguanosine modification of both mitochondrial and cytoplasmic tRNAs []. The enzyme is found in both eukaryotes and archaea [].; GO: 0003723 RNA binding, 0004809 tRNA (guanine-N2-)-methyltransferase activity, 0008033 tRNA processing; PDB: 2YTZ_B 2DUL_A 2EJU_A 2EJT_A 3AXT_A 3AXS_A.
Probab=97.66 E-value=0.00019 Score=65.91 Aligned_cols=103 Identities=17% Similarity=0.179 Sum_probs=77.8
Q ss_pred CCcEEEEcCcccHHHHHHHHHCCC-ceEEEEECChHHHHHHHHhcCccccccCCCCcEEEEEcccccc--ccCCCeeEEE
Q 035593 78 PGPIGILGFGAGSAARLILDLYPE-AVIHGWELDPSVIKVAREFFALEKLEKSYPDRLFVYVGNALKA--SLKDGFSGIL 154 (269)
Q Consensus 78 ~~~VL~iG~G~G~~~~~l~~~~p~-~~v~~vEidp~~~~~a~~~~~~~~~~~~~~~rv~~~~~D~~~~--~~~~~yD~I~ 154 (269)
+.+|||.=+|+|.=+...++..++ .+|++-|+||+.++..++++.+++.. +.++++...|+..+ .....||+|=
T Consensus 50 ~~~~lDalaasGvR~iRy~~E~~~~~~v~~NDi~~~a~~~i~~N~~~N~~~---~~~~~v~~~DAn~ll~~~~~~fD~ID 126 (377)
T PF02005_consen 50 PIRVLDALAASGVRGIRYAKELAGVDKVTANDISPEAVELIKRNLELNGLE---DERIEVSNMDANVLLYSRQERFDVID 126 (377)
T ss_dssp -EEEEETT-TTSHHHHHHHHH-SSECEEEEEES-HHHHHHHHHHHHHCT-S---GCCEEEEES-HHHHHCHSTT-EEEEE
T ss_pred CceEEeccccccHHHHHHHHHcCCCCEEEEecCCHHHHHHHHHhHhhcccc---CceEEEehhhHHHHhhhccccCCEEE
Confidence 458999999999888777766554 59999999999999999998766532 23799999999987 3788999999
Q ss_pred EcCCCCCCCCCCCCcHHHHHHHHhhccCCcEEEEEec
Q 035593 155 VDLFSKGSLLSELEDPNTWEKLRQCLRKGGRIMVNVG 191 (269)
Q Consensus 155 ~d~~~~~~~~~~l~~~e~~~~~~~~L~pgG~l~~~~~ 191 (269)
+|.|... ..|+..+.+.++.||+|.+...
T Consensus 127 lDPfGSp--------~pfldsA~~~v~~gGll~vTaT 155 (377)
T PF02005_consen 127 LDPFGSP--------APFLDSALQAVKDGGLLCVTAT 155 (377)
T ss_dssp E--SS----------HHHHHHHHHHEEEEEEEEEEE-
T ss_pred eCCCCCc--------cHhHHHHHHHhhcCCEEEEecc
Confidence 9999752 5899999999999999998764
No 237
>COG0500 SmtA SAM-dependent methyltransferases [Secondary metabolites biosynthesis, transport, and catabolism / General function prediction only]
Probab=97.65 E-value=0.0011 Score=50.60 Aligned_cols=102 Identities=23% Similarity=0.260 Sum_probs=69.1
Q ss_pred EEEEcCcccHHHHHHHHHCCC-ceEEEEECChHHHHHHHHhcCccccccCCCCcEEEEEccccc--c-ccC-CCeeEEEE
Q 035593 81 IGILGFGAGSAARLILDLYPE-AVIHGWELDPSVIKVAREFFALEKLEKSYPDRLFVYVGNALK--A-SLK-DGFSGILV 155 (269)
Q Consensus 81 VL~iG~G~G~~~~~l~~~~p~-~~v~~vEidp~~~~~a~~~~~~~~~~~~~~~rv~~~~~D~~~--~-~~~-~~yD~I~~ 155 (269)
++++|||+|... .+....+. ..++++|+++.++..++....... ...+.++.+|... . ... ..||++ .
T Consensus 52 ~ld~~~g~g~~~-~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~d~~-~ 124 (257)
T COG0500 52 VLDIGCGTGRLA-LLARLGGRGAYVVGVDLSPEMLALARARAEGAG-----LGLVDFVVADALGGVLPFEDSASFDLV-I 124 (257)
T ss_pred eEEecCCcCHHH-HHHHhCCCCceEEEEeCCHHHHHHHHhhhhhcC-----CCceEEEEeccccCCCCCCCCCceeEE-e
Confidence 999999999977 44443333 488999999999998655432111 1116888888776 3 223 489999 4
Q ss_pred cCCCCCCCCCCCCcHHHHHHHHhhccCCcEEEEEecCC
Q 035593 156 DLFSKGSLLSELEDPNTWEKLRQCLRKGGRIMVNVGGS 193 (269)
Q Consensus 156 d~~~~~~~~~~l~~~e~~~~~~~~L~pgG~l~~~~~~~ 193 (269)
...... .......+..+.+.|+|+|.+++.....
T Consensus 125 ~~~~~~----~~~~~~~~~~~~~~l~~~g~~~~~~~~~ 158 (257)
T COG0500 125 SLLVLH----LLPPAKALRELLRVLKPGGRLVLSDLLR 158 (257)
T ss_pred eeeehh----cCCHHHHHHHHHHhcCCCcEEEEEeccC
Confidence 322111 1114789999999999999998877654
No 238
>PRK10742 putative methyltransferase; Provisional
Probab=97.59 E-value=0.00026 Score=60.83 Aligned_cols=79 Identities=15% Similarity=0.136 Sum_probs=61.4
Q ss_pred cEEEEcCcccHHHHHHHHHCCCceEEEEECChHHHHHHHHhcCcc----ccccCCCCcEEEEEcccccc--ccCCCeeEE
Q 035593 80 PIGILGFGAGSAARLILDLYPEAVIHGWELDPSVIKVAREFFALE----KLEKSYPDRLFVYVGNALKA--SLKDGFSGI 153 (269)
Q Consensus 80 ~VL~iG~G~G~~~~~l~~~~p~~~v~~vEidp~~~~~a~~~~~~~----~~~~~~~~rv~~~~~D~~~~--~~~~~yD~I 153 (269)
+|||+=+|.|..+..++.+ +++|++||.+|.+..+.++.+..- .....-..|++++.+|+.++ .....||+|
T Consensus 91 ~VLD~TAGlG~Da~~las~--G~~V~~vEr~p~vaalL~dgL~ra~~~~~~~~~~~~ri~l~~~da~~~L~~~~~~fDVV 168 (250)
T PRK10742 91 DVVDATAGLGRDAFVLASV--GCRVRMLERNPVVAALLDDGLARGYADAEIGGWLQERLQLIHASSLTALTDITPRPQVV 168 (250)
T ss_pred EEEECCCCccHHHHHHHHc--CCEEEEEECCHHHHHHHHHHHHHhhhccccchhhhceEEEEeCcHHHHHhhCCCCCcEE
Confidence 8999999999999999974 788999999999999888765321 00000015799999999998 344589999
Q ss_pred EEcCCCC
Q 035593 154 LVDLFSK 160 (269)
Q Consensus 154 ~~d~~~~ 160 (269)
++|..-+
T Consensus 169 YlDPMfp 175 (250)
T PRK10742 169 YLDPMFP 175 (250)
T ss_pred EECCCCC
Confidence 9996543
No 239
>PF09243 Rsm22: Mitochondrial small ribosomal subunit Rsm22; InterPro: IPR015324 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. Rsm22 has been identified as a mitochondrial small ribosomal subunit [] and is a methyltransferase. In Schizosaccharomyces pombe (Fission yeast), Rsm22 is tandemly fused to Cox11 (a factor required for copper insertion into cytochrome oxidase) and the two proteins are proteolytically cleaved after import into the mitochondria []. This entry consists of mitochondrial Rsm22 and homologous sequences from bacteria.; GO: 0008168 methyltransferase activity, 0006412 translation
Probab=97.58 E-value=0.00075 Score=59.39 Aligned_cols=106 Identities=10% Similarity=0.035 Sum_probs=64.9
Q ss_pred CCCcEEEEcCcccHHHHHHHHHCCC-ceEEEEECChHHHHHHHHhcCccccccCCCCcEEEEEcccc-ccccCCCeeEEE
Q 035593 77 PPGPIGILGFGAGSAARLILDLYPE-AVIHGWELDPSVIKVAREFFALEKLEKSYPDRLFVYVGNAL-KASLKDGFSGIL 154 (269)
Q Consensus 77 ~~~~VL~iG~G~G~~~~~l~~~~p~-~~v~~vEidp~~~~~a~~~~~~~~~~~~~~~rv~~~~~D~~-~~~~~~~yD~I~ 154 (269)
.|.+|||+|+|.|+.+.++...++. .++++||.++.|+++++.-+.-... ...... ..+.. +...-...|+|+
T Consensus 33 ~P~~vLD~GsGpGta~wAa~~~~~~~~~~~~vd~s~~~~~l~~~l~~~~~~----~~~~~~-~~~~~~~~~~~~~~DLvi 107 (274)
T PF09243_consen 33 RPRSVLDFGSGPGTALWAAREVWPSLKEYTCVDRSPEMLELAKRLLRAGPN----NRNAEW-RRVLYRDFLPFPPDDLVI 107 (274)
T ss_pred CCceEEEecCChHHHHHHHHHHhcCceeeeeecCCHHHHHHHHHHHhcccc----cccchh-hhhhhcccccCCCCcEEE
Confidence 4789999999999998888887773 4899999999999999987642110 011111 11111 112223349998
Q ss_pred EcCCCCCCCCCCCCcHHHHHHHHhhccCCcEEEEEec
Q 035593 155 VDLFSKGSLLSELEDPNTWEKLRQCLRKGGRIMVNVG 191 (269)
Q Consensus 155 ~d~~~~~~~~~~l~~~e~~~~~~~~L~pgG~l~~~~~ 191 (269)
+.- .-...+. -...++++.+.+.+++ .|++--.
T Consensus 108 ~s~-~L~EL~~-~~r~~lv~~LW~~~~~--~LVlVEp 140 (274)
T PF09243_consen 108 ASY-VLNELPS-AARAELVRSLWNKTAP--VLVLVEP 140 (274)
T ss_pred Eeh-hhhcCCc-hHHHHHHHHHHHhccC--cEEEEcC
Confidence 631 1112222 2345778888777766 5555443
No 240
>PF05148 Methyltransf_8: Hypothetical methyltransferase; InterPro: IPR007823 This family consists of uncharacterised eukaryotic proteins which are related to S-adenosyl-L-methionine-dependent methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 2ZFU_B.
Probab=97.57 E-value=0.0003 Score=58.77 Aligned_cols=86 Identities=15% Similarity=0.162 Sum_probs=53.4
Q ss_pred CCcEEEEcCcccHHHHHHHHHCCCceEEEEECChHHHHHHHHhcCccccccCCCCcEEEEEcccccc-ccCCCeeEEEEc
Q 035593 78 PGPIGILGFGAGSAARLILDLYPEAVIHGWELDPSVIKVAREFFALEKLEKSYPDRLFVYVGNALKA-SLKDGFSGILVD 156 (269)
Q Consensus 78 ~~~VL~iG~G~G~~~~~l~~~~p~~~v~~vEidp~~~~~a~~~~~~~~~~~~~~~rv~~~~~D~~~~-~~~~~yD~I~~d 156 (269)
...|.|+|||.+.++..+.. ..+|...|+-. . ++ .++.+|.... ..++..|+++.+
T Consensus 73 ~~viaD~GCGdA~la~~~~~---~~~V~SfDLva-----------~-------n~--~Vtacdia~vPL~~~svDv~Vfc 129 (219)
T PF05148_consen 73 SLVIADFGCGDAKLAKAVPN---KHKVHSFDLVA-----------P-------NP--RVTACDIANVPLEDESVDVAVFC 129 (219)
T ss_dssp TS-EEEES-TT-HHHHH--S------EEEEESS------------S-------ST--TEEES-TTS-S--TT-EEEEEEE
T ss_pred CEEEEECCCchHHHHHhccc---CceEEEeeccC-----------C-------CC--CEEEecCccCcCCCCceeEEEEE
Confidence 46899999999999976532 45788888843 1 23 3667898777 667899999987
Q ss_pred CCCCCCCCCCCCcHHHHHHHHhhccCCcEEEEEec
Q 035593 157 LFSKGSLLSELEDPNTWEKLRQCLRKGGRIMVNVG 191 (269)
Q Consensus 157 ~~~~~~~~~~l~~~e~~~~~~~~L~pgG~l~~~~~ 191 (269)
+.-.. -.-.+|++++.+.||+||.|.+--.
T Consensus 130 LSLMG-----Tn~~~fi~EA~RvLK~~G~L~IAEV 159 (219)
T PF05148_consen 130 LSLMG-----TNWPDFIREANRVLKPGGILKIAEV 159 (219)
T ss_dssp S---S-----S-HHHHHHHHHHHEEEEEEEEEEEE
T ss_pred hhhhC-----CCcHHHHHHHHheeccCcEEEEEEe
Confidence 64321 1236999999999999999987544
No 241
>TIGR03439 methyl_EasF probable methyltransferase domain, EasF family. This model represents an uncharacterized domain of about 300 amino acids with homology to S-adenosylmethionine-dependent methyltransferases. Proteins with this domain are exclusively fungal. A few, such as EasF from Neotyphodium lolii, are associated with the biosynthesis of ergot alkaloids, a class of fungal secondary metabolites. EasF may, in fact, be the AdoMet:dimethylallyltryptophan N-methyltransferase, the enzyme that follows tryptophan dimethylallyltransferase (DMATS) in ergot alkaloid biosynthesis. Several other members of this family, including mug158 (meiotically up-regulated gene 158 protein) from Schizosaccharomyces pombe, contain an additional uncharacterized domain DUF323 (pfam03781).
Probab=97.56 E-value=0.00074 Score=60.60 Aligned_cols=109 Identities=12% Similarity=0.069 Sum_probs=73.7
Q ss_pred CCCcEEEEcCcccHHHHHHHHHCC----CceEEEEECChHHHHHHHHhcCccccccCCCCcEEE--EEcccccc----cc
Q 035593 77 PPGPIGILGFGAGSAARLILDLYP----EAVIHGWELDPSVIKVAREFFALEKLEKSYPDRLFV--YVGNALKA----SL 146 (269)
Q Consensus 77 ~~~~VL~iG~G~G~~~~~l~~~~p----~~~v~~vEidp~~~~~a~~~~~~~~~~~~~~~rv~~--~~~D~~~~----~~ 146 (269)
+...++|+|||+|.=++.|++... ..+.++||||.++++.+.+.+.... -|.+++ +++|..+- ..
T Consensus 76 ~~~~lIELGsG~~~Kt~~LL~aL~~~~~~~~Y~plDIS~~~L~~a~~~L~~~~-----~p~l~v~~l~gdy~~~l~~l~~ 150 (319)
T TIGR03439 76 SGSMLVELGSGNLRKVGILLEALERQKKSVDYYALDVSRSELQRTLAELPLGN-----FSHVRCAGLLGTYDDGLAWLKR 150 (319)
T ss_pred CCCEEEEECCCchHHHHHHHHHHHhcCCCceEEEEECCHHHHHHHHHhhhhcc-----CCCeEEEEEEecHHHHHhhccc
Confidence 456899999999998887777552 4689999999999999998875211 244555 88887653 11
Q ss_pred ---CCCeeEEEEcCCCCCCCCCCCCcHHHHHHHHh-hccCCcEEEEEec
Q 035593 147 ---KDGFSGILVDLFSKGSLLSELEDPNTWEKLRQ-CLRKGGRIMVNVG 191 (269)
Q Consensus 147 ---~~~yD~I~~d~~~~~~~~~~l~~~e~~~~~~~-~L~pgG~l~~~~~ 191 (269)
.....+|+.-..+-....+ .....|++.+++ .|+|||.|++-+-
T Consensus 151 ~~~~~~~r~~~flGSsiGNf~~-~ea~~fL~~~~~~~l~~~d~lLiG~D 198 (319)
T TIGR03439 151 PENRSRPTTILWLGSSIGNFSR-PEAAAFLAGFLATALSPSDSFLIGLD 198 (319)
T ss_pred ccccCCccEEEEeCccccCCCH-HHHHHHHHHHHHhhCCCCCEEEEecC
Confidence 2345666642111111111 113489999999 9999999988653
No 242
>PF04816 DUF633: Family of unknown function (DUF633) ; InterPro: IPR006901 This is a family of uncharacterised bacterial proteins.; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity; PDB: 3LEC_A 3KU1_G 3KR9_A 3GNL_B.
Probab=97.53 E-value=0.00062 Score=57.28 Aligned_cols=102 Identities=16% Similarity=0.165 Sum_probs=72.5
Q ss_pred EEEEcCcccHHHHHHHHHCCCceEEEEECChHHHHHHHHhcCccccccCCCCcEEEEEcccccc-ccCCCeeEEEEcCCC
Q 035593 81 IGILGFGAGSAARLILDLYPEAVIHGWELDPSVIKVAREFFALEKLEKSYPDRLFVYVGNALKA-SLKDGFSGILVDLFS 159 (269)
Q Consensus 81 VL~iG~G~G~~~~~l~~~~p~~~v~~vEidp~~~~~a~~~~~~~~~~~~~~~rv~~~~~D~~~~-~~~~~yD~I~~d~~~ 159 (269)
|.||||--|.++.+|.+.....+++++|+++.-++.|++...... ...+++++.+|+.+. ...+..|.|++....
T Consensus 1 vaDIGtDHgyLpi~L~~~~~~~~~ia~DI~~gpL~~A~~~i~~~~----l~~~i~~rlgdGL~~l~~~e~~d~ivIAGMG 76 (205)
T PF04816_consen 1 VADIGTDHGYLPIYLLKNGKAPKAIAVDINPGPLEKAKENIAKYG----LEDRIEVRLGDGLEVLKPGEDVDTIVIAGMG 76 (205)
T ss_dssp EEEET-STTHHHHHHHHTTSEEEEEEEESSHHHHHHHHHHHHHTT-----TTTEEEEE-SGGGG--GGG---EEEEEEE-
T ss_pred CceeccchhHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcC----CcccEEEEECCcccccCCCCCCCEEEEecCC
Confidence 689999999999999996555689999999999999998874332 246899999999887 444557999886543
Q ss_pred CCCCCCCCCcHHHHHHHHhhccCCcEEEEEecC
Q 035593 160 KGSLLSELEDPNTWEKLRQCLRKGGRIMVNVGG 192 (269)
Q Consensus 160 ~~~~~~~l~~~e~~~~~~~~L~pgG~l~~~~~~ 192 (269)
+. ...++++.....++..-.|++.-.+
T Consensus 77 G~------lI~~ILe~~~~~~~~~~~lILqP~~ 103 (205)
T PF04816_consen 77 GE------LIIEILEAGPEKLSSAKRLILQPNT 103 (205)
T ss_dssp HH------HHHHHHHHTGGGGTT--EEEEEESS
T ss_pred HH------HHHHHHHhhHHHhccCCeEEEeCCC
Confidence 31 1457888888888776778876643
No 243
>PF01795 Methyltransf_5: MraW methylase family; InterPro: IPR002903 This is a family of S-adenosyl-L-methionine-dependent methyltransferases, which are found primarily, though not exclusively, in bacteria. The Escherichia coli protein is essential and has been linked to peptidoglycan biosynthesis [, ].; GO: 0008168 methyltransferase activity; PDB: 1N2X_A 1M6Y_A 1WG8_A 3TKA_A.
Probab=97.47 E-value=0.00036 Score=62.02 Aligned_cols=77 Identities=29% Similarity=0.374 Sum_probs=58.2
Q ss_pred CCCCCcEEEEcCcccHHHHHHHHHCCCceEEEEECChHHHHHHHHhcCccccccCCCCcEEEEEcccccc------c-cC
Q 035593 75 ILPPGPIGILGFGAGSAARLILDLYPEAVIHGWELDPSVIKVAREFFALEKLEKSYPDRLFVYVGNALKA------S-LK 147 (269)
Q Consensus 75 l~~~~~VL~iG~G~G~~~~~l~~~~p~~~v~~vEidp~~~~~a~~~~~~~~~~~~~~~rv~~~~~D~~~~------~-~~ 147 (269)
..|...++|.=.|.|+.+..+++.+|+++++++|.||++++.|++.+... .+|+.+++++..++ . ..
T Consensus 18 ~~~~g~~vD~T~G~GGHS~aiL~~~~~~~li~~DrD~~a~~~a~~~l~~~------~~r~~~~~~~F~~l~~~l~~~~~~ 91 (310)
T PF01795_consen 18 PKPGGIYVDCTFGGGGHSKAILEKLPNGRLIGIDRDPEALERAKERLKKF------DDRFIFIHGNFSNLDEYLKELNGI 91 (310)
T ss_dssp --TT-EEEETT-TTSHHHHHHHHT-TT-EEEEEES-HHHHHHHHCCTCCC------CTTEEEEES-GGGHHHHHHHTTTT
T ss_pred cCCCceEEeecCCcHHHHHHHHHhCCCCeEEEecCCHHHHHHHHHHHhhc------cceEEEEeccHHHHHHHHHHccCC
Confidence 45678899999999999999999889999999999999999999887522 47999999999886 2 34
Q ss_pred CCeeEEEEcC
Q 035593 148 DGFSGILVDL 157 (269)
Q Consensus 148 ~~yD~I~~d~ 157 (269)
.++|.|++|+
T Consensus 92 ~~~dgiL~DL 101 (310)
T PF01795_consen 92 NKVDGILFDL 101 (310)
T ss_dssp S-EEEEEEE-
T ss_pred CccCEEEEcc
Confidence 5899999885
No 244
>COG1867 TRM1 N2,N2-dimethylguanosine tRNA methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=97.46 E-value=0.00065 Score=61.15 Aligned_cols=103 Identities=16% Similarity=0.125 Sum_probs=84.9
Q ss_pred CCcEEEEcCcccHHHHHHHHHCCCceEEEEECChHHHHHHHHhcCccccccCCCCcEEEEEcccccc--ccCCCeeEEEE
Q 035593 78 PGPIGILGFGAGSAARLILDLYPEAVIHGWELDPSVIKVAREFFALEKLEKSYPDRLFVYVGNALKA--SLKDGFSGILV 155 (269)
Q Consensus 78 ~~~VL~iG~G~G~~~~~l~~~~p~~~v~~vEidp~~~~~a~~~~~~~~~~~~~~~rv~~~~~D~~~~--~~~~~yD~I~~ 155 (269)
+.+|||-=+|+|.=+...+...+..+++.=||||..+++++++...+. .....++..|+..+ .....||+|=+
T Consensus 53 ~~~v~DalsatGiRgIRya~E~~~~~v~lNDisp~Avelik~Nv~~N~-----~~~~~v~n~DAN~lm~~~~~~fd~IDi 127 (380)
T COG1867 53 PKRVLDALSATGIRGIRYAVETGVVKVVLNDISPKAVELIKENVRLNS-----GEDAEVINKDANALLHELHRAFDVIDI 127 (380)
T ss_pred CeEEeecccccchhHhhhhhhcCccEEEEccCCHHHHHHHHHHHHhcC-----cccceeecchHHHHHHhcCCCccEEec
Confidence 789999999999988777765666699999999999999999987652 34566777999887 44589999999
Q ss_pred cCCCCCCCCCCCCcHHHHHHHHhhccCCcEEEEEecCC
Q 035593 156 DLFSKGSLLSELEDPNTWEKLRQCLRKGGRIMVNVGGS 193 (269)
Q Consensus 156 d~~~~~~~~~~l~~~e~~~~~~~~L~pgG~l~~~~~~~ 193 (269)
|.|.+. ..|+..+.+..+.+|++.+.....
T Consensus 128 DPFGSP--------aPFlDaA~~s~~~~G~l~vTATD~ 157 (380)
T COG1867 128 DPFGSP--------APFLDAALRSVRRGGLLCVTATDT 157 (380)
T ss_pred CCCCCC--------chHHHHHHHHhhcCCEEEEEeccc
Confidence 998753 479999999999999999876543
No 245
>PF07942 N2227: N2227-like protein; InterPro: IPR012901 This family features sequences that are similar to a region of hypothetical yeast gene product N2227 (P53934 from SWISSPROT). This is thought to be expressed during meiosis and may be involved in the defence response to stressful conditions [].
Probab=97.44 E-value=0.00059 Score=59.59 Aligned_cols=107 Identities=20% Similarity=0.262 Sum_probs=75.8
Q ss_pred CCcEEEEcCcccHHHHHHHHHCCCceEEEEECChHHHHHHHHhcC---------ccccc------------------c--
Q 035593 78 PGPIGILGFGAGSAARLILDLYPEAVIHGWELDPSVIKVAREFFA---------LEKLE------------------K-- 128 (269)
Q Consensus 78 ~~~VL~iG~G~G~~~~~l~~~~p~~~v~~vEidp~~~~~a~~~~~---------~~~~~------------------~-- 128 (269)
+.+||+-|||-|.++..++++ +..+.+.|.|--|+=...--++ +.++. .
T Consensus 57 ~~~VLVPGsGLGRLa~Eia~~--G~~~~gnE~S~~Mll~s~fiLn~~~~~~~~~I~Pf~~~~sn~~~~~dqlr~v~iPDv 134 (270)
T PF07942_consen 57 KIRVLVPGSGLGRLAWEIAKL--GYAVQGNEFSYFMLLASNFILNHCSQPNQFTIYPFVHSFSNQKSREDQLRPVRIPDV 134 (270)
T ss_pred ccEEEEcCCCcchHHHHHhhc--cceEEEEEchHHHHHHHHHHHcccCCCCcEEEecceecccCCCCHHHhCCceEeCCc
Confidence 679999999999999999984 8899999999988654432111 11110 0
Q ss_pred ------CCCCcEEEEEcccccc-cc---CCCeeEEEEcCCCCCCCCCCCCcHHHHHHHHhhccCCcEEEEEec
Q 035593 129 ------SYPDRLFVYVGNALKA-SL---KDGFSGILVDLFSKGSLLSELEDPNTWEKLRQCLRKGGRIMVNVG 191 (269)
Q Consensus 129 ------~~~~rv~~~~~D~~~~-~~---~~~yD~I~~d~~~~~~~~~~l~~~e~~~~~~~~L~pgG~l~~~~~ 191 (269)
....++....||+.++ .. .++||+|+..-|- +.. . .-.++++.+.+.|||||+. +|+.
T Consensus 135 ~p~~~~~~~~~~sm~aGDF~e~y~~~~~~~~~d~VvT~FFI-DTA-~--Ni~~Yi~tI~~lLkpgG~W-IN~G 202 (270)
T PF07942_consen 135 DPSSELPSPSNLSMCAGDFLEVYGPDENKGSFDVVVTCFFI-DTA-E--NIIEYIETIEHLLKPGGYW-INFG 202 (270)
T ss_pred CcccccCCCCceeEecCccEEecCCcccCCcccEEEEEEEe-ech-H--HHHHHHHHHHHHhccCCEE-EecC
Confidence 0245789999999987 33 4799999865332 111 1 1358999999999999944 6764
No 246
>PTZ00357 methyltransferase; Provisional
Probab=97.42 E-value=0.00067 Score=65.44 Aligned_cols=104 Identities=17% Similarity=0.170 Sum_probs=71.6
Q ss_pred cEEEEcCcccHHHHHHHHHCC----CceEEEEECChHHHHHHHHhc-Ccccccc---CCCCcEEEEEccccccccC----
Q 035593 80 PIGILGFGAGSAARLILDLYP----EAVIHGWELDPSVIKVAREFF-ALEKLEK---SYPDRLFVYVGNALKASLK---- 147 (269)
Q Consensus 80 ~VL~iG~G~G~~~~~l~~~~p----~~~v~~vEidp~~~~~a~~~~-~~~~~~~---~~~~rv~~~~~D~~~~~~~---- 147 (269)
.|+++|+|-|-+....++... ..+|.+||.||..+...+.+. ....|.. ..+.+|++|..|+|.+..+
T Consensus 703 VImVVGAGRGPLVdraLrAak~~gvkVrIyAVEKNPpAA~~tllr~~N~eeW~n~~~~~G~~VtII~sDMR~W~~pe~~~ 782 (1072)
T PTZ00357 703 HLVLLGCGRGPLIDECLHAVSALGVRLRIFAIEKNLPAAAFTRMRWANDPEWTQLAYTFGHTLEVIVADGRTIATAAENG 782 (1072)
T ss_pred EEEEEcCCccHHHHHHHHHHHHcCCcEEEEEEecCcchHHHHHHHHhcccccccccccCCCeEEEEeCcccccccccccc
Confidence 589999999998877666432 469999999966443433332 3334421 1246899999999998322
Q ss_pred --------CCeeEEEEcCCCCCCCCCCCCcHHHHHHHHhhccC----CcE
Q 035593 148 --------DGFSGILVDLFSKGSLLSELEDPNTWEKLRQCLRK----GGR 185 (269)
Q Consensus 148 --------~~yD~I~~d~~~~~~~~~~l~~~e~~~~~~~~L~p----gG~ 185 (269)
+++|+||+.+-.+ ....-.++|-+..+.+.||+ +|+
T Consensus 783 s~~~P~~~gKaDIVVSELLGS--FGDNELSPECLDGaQrfLKdiqhsdGI 830 (1072)
T PTZ00357 783 SLTLPADFGLCDLIVSELLGS--LGDNELSPECLEAFHAQLEDIQLSRGI 830 (1072)
T ss_pred cccccccccccceehHhhhcc--cccccCCHHHHHHHHHhhhhhcccccc
Confidence 2799999865433 22333367888888888887 776
No 247
>COG0275 Predicted S-adenosylmethionine-dependent methyltransferase involved in cell envelope biogenesis [Cell envelope biogenesis, outer membrane]
Probab=97.36 E-value=0.0016 Score=57.25 Aligned_cols=78 Identities=29% Similarity=0.327 Sum_probs=65.6
Q ss_pred CCCCCCcEEEEcCcccHHHHHHHHHCC-CceEEEEECChHHHHHHHHhcCccccccCCCCcEEEEEcccccc------cc
Q 035593 74 PILPPGPIGILGFGAGSAARLILDLYP-EAVIHGWELDPSVIKVAREFFALEKLEKSYPDRLFVYVGNALKA------SL 146 (269)
Q Consensus 74 ~l~~~~~VL~iG~G~G~~~~~l~~~~p-~~~v~~vEidp~~~~~a~~~~~~~~~~~~~~~rv~~~~~D~~~~------~~ 146 (269)
...|....+|.=.|.|+.+.++++.+| ..+++++|.||.+++.|++.+.-. ++|++++++.+..+ ..
T Consensus 20 ~~~~~giyiD~TlG~GGHS~~iL~~l~~~~~li~~DrD~~Ai~~a~~~l~~~------~~r~~~v~~~F~~l~~~l~~~~ 93 (314)
T COG0275 20 APKPDGIYIDGTLGAGGHSRAILEKLPDLGRLIGIDRDPQAIAIAKERLKEF------DGRVTLVHGNFANLAEALKELG 93 (314)
T ss_pred ccCCCcEEEEecCCCcHhHHHHHHhCCCCCeEEEEcCCHHHHHHHHHHhhcc------CCcEEEEeCcHHHHHHHHHhcC
Confidence 455778999999999999999999988 457999999999999999987421 47999999998876 22
Q ss_pred CCCeeEEEEcC
Q 035593 147 KDGFSGILVDL 157 (269)
Q Consensus 147 ~~~yD~I~~d~ 157 (269)
..++|-|+.|+
T Consensus 94 i~~vDGiL~DL 104 (314)
T COG0275 94 IGKVDGILLDL 104 (314)
T ss_pred CCceeEEEEec
Confidence 46899999875
No 248
>COG3897 Predicted methyltransferase [General function prediction only]
Probab=97.35 E-value=0.00096 Score=55.06 Aligned_cols=108 Identities=19% Similarity=0.186 Sum_probs=75.5
Q ss_pred cCCCCCCCCcEEEEcCcccHHHHHHHHHCCCceEEEEECChHHHHHHHHhcCccccccCCCCcEEEEEccccccccCCCe
Q 035593 71 TLPPILPPGPIGILGFGAGSAARLILDLYPEAVIHGWELDPSVIKVAREFFALEKLEKSYPDRLFVYVGNALKASLKDGF 150 (269)
Q Consensus 71 ~~~~l~~~~~VL~iG~G~G~~~~~l~~~~p~~~v~~vEidp~~~~~a~~~~~~~~~~~~~~~rv~~~~~D~~~~~~~~~y 150 (269)
..|.....++|||+|.|+|..+...++. ....|.+.|++|..+...+-+...+ .-.+.+...|... .+..+
T Consensus 73 ~~PetVrgkrVLd~gagsgLvaIAaa~a-GA~~v~a~d~~P~~~~ai~lNa~an------gv~i~~~~~d~~g--~~~~~ 143 (218)
T COG3897 73 DHPETVRGKRVLDLGAGSGLVAIAAARA-GAAEVVAADIDPWLEQAIRLNAAAN------GVSILFTHADLIG--SPPAF 143 (218)
T ss_pred cCccccccceeeecccccChHHHHHHHh-hhHHHHhcCCChHHHHHhhcchhhc------cceeEEeeccccC--CCcce
Confidence 3444556899999999999999988874 4568999999998888877766543 3467888888765 67899
Q ss_pred eEEEE-cCCCCCCCCCCCCcHHHHHHHHhhccCCcEEEEEecCCC
Q 035593 151 SGILV-DLFSKGSLLSELEDPNTWEKLRQCLRKGGRIMVNVGGSC 194 (269)
Q Consensus 151 D~I~~-d~~~~~~~~~~l~~~e~~~~~~~~L~pgG~l~~~~~~~~ 194 (269)
|+|+. |++-.... -...+. ++..|+..|..++ ++.+.
T Consensus 144 Dl~LagDlfy~~~~-----a~~l~~-~~~~l~~~g~~vl-vgdp~ 181 (218)
T COG3897 144 DLLLAGDLFYNHTE-----ADRLIP-WKDRLAEAGAAVL-VGDPG 181 (218)
T ss_pred eEEEeeceecCchH-----HHHHHH-HHHHHHhCCCEEE-EeCCC
Confidence 99985 44322111 123333 7777888887666 44443
No 249
>KOG2187 consensus tRNA uracil-5-methyltransferase and related tRNA-modifying enzymes [Translation, ribosomal structure and biogenesis]
Probab=97.34 E-value=0.0013 Score=61.57 Aligned_cols=107 Identities=16% Similarity=0.141 Sum_probs=76.4
Q ss_pred cCCCCCCCCcEEEEcCcccHHHHHHHHHCCCceEEEEECChHHHHHHHHhcCccccccCCCCcEEEEEcccccc-c--cC
Q 035593 71 TLPPILPPGPIGILGFGAGSAARLILDLYPEAVIHGWELDPSVIKVAREFFALEKLEKSYPDRLFVYVGNALKA-S--LK 147 (269)
Q Consensus 71 ~~~~l~~~~~VL~iG~G~G~~~~~l~~~~p~~~v~~vEidp~~~~~a~~~~~~~~~~~~~~~rv~~~~~D~~~~-~--~~ 147 (269)
.+..+...+-+||+-||+|.++..+++ +-.+|.+||++|+.++-|+++...++ -.+.++|+|-+.+. . ..
T Consensus 377 e~~~l~~~k~llDv~CGTG~iglala~--~~~~ViGvEi~~~aV~dA~~nA~~Ng-----isNa~Fi~gqaE~~~~sl~~ 449 (534)
T KOG2187|consen 377 EWAGLPADKTLLDVCCGTGTIGLALAR--GVKRVIGVEISPDAVEDAEKNAQING-----ISNATFIVGQAEDLFPSLLT 449 (534)
T ss_pred HHhCCCCCcEEEEEeecCCceehhhhc--cccceeeeecChhhcchhhhcchhcC-----ccceeeeecchhhccchhcc
Confidence 333444578899999999999999998 56799999999999999999987665 46899999977765 1 11
Q ss_pred ---CCee-EEEEcCCCCCCCCCCCCcHHHHHHHHhhccCCcEEEEEe
Q 035593 148 ---DGFS-GILVDLFSKGSLLSELEDPNTWEKLRQCLRKGGRIMVNV 190 (269)
Q Consensus 148 ---~~yD-~I~~d~~~~~~~~~~l~~~e~~~~~~~~L~pgG~l~~~~ 190 (269)
..=+ ++++|..-.. ....++..+++.-++.=++.+.+
T Consensus 450 ~~~~~~~~v~iiDPpR~G------lh~~~ik~l~~~~~~~rlvyvSC 490 (534)
T KOG2187|consen 450 PCCDSETLVAIIDPPRKG------LHMKVIKALRAYKNPRRLVYVSC 490 (534)
T ss_pred cCCCCCceEEEECCCccc------ccHHHHHHHHhccCccceEEEEc
Confidence 2334 5566654321 13467777776665665555554
No 250
>PF04989 CmcI: Cephalosporin hydroxylase; InterPro: IPR007072 This entry contains Rhamnosyl O-methyltransferase which catalyses the O-methylation of the hydroxyl group located on C-2 of the first rhamnosyl residue linked to the phenolic group of glycosylated phenolphthiocerol dimycocerosates (PGL) and p-hydroxybenzoic acid derivatives (p-HBAD) []. Members of this family are about 220 amino acids long. It also includes the CmcI protein O85726 from SWISSPROT, which is presumed to represent the cephalosporin-7--hydroxylase []. However this has not been experimentally verified.; GO: 0008168 methyltransferase activity, 0008610 lipid biosynthetic process; PDB: 2BR4_B 2BR3_E 2BR5_E 2BM8_J 2BM9_E.
Probab=97.32 E-value=0.0012 Score=55.25 Aligned_cols=101 Identities=15% Similarity=0.160 Sum_probs=55.6
Q ss_pred CCCcEEEEcCcccHHHHHHHH---HC-CCceEEEEECChHHH-HHHHHhcCccccccCCCCcEEEEEcccccc-------
Q 035593 77 PPGPIGILGFGAGSAARLILD---LY-PEAVIHGWELDPSVI-KVAREFFALEKLEKSYPDRLFVYVGNALKA------- 144 (269)
Q Consensus 77 ~~~~VL~iG~G~G~~~~~l~~---~~-p~~~v~~vEidp~~~-~~a~~~~~~~~~~~~~~~rv~~~~~D~~~~------- 144 (269)
+|..|+++|.-.|+.+.+++. .+ +..+|.+||||..-. +.+.+.-.+ .+|+++++||..+.
T Consensus 32 kPd~IIE~Gi~~GGSli~~A~ml~~~~~~~~VigiDIdir~~~~~a~e~hp~-------~~rI~~i~Gds~d~~~~~~v~ 104 (206)
T PF04989_consen 32 KPDLIIETGIAHGGSLIFWASMLELLGGKGKVIGIDIDIRPHNRKAIESHPM-------SPRITFIQGDSIDPEIVDQVR 104 (206)
T ss_dssp --SEEEEE--TTSHHHHHHHHHHHHTT---EEEEEES-GTT--S-GGGG-----------TTEEEEES-SSSTHHHHTSG
T ss_pred CCCeEEEEecCCCchHHHHHHHHHHhCCCceEEEEeCCcchhchHHHhhccc-------cCceEEEECCCCCHHHHHHHH
Confidence 688999999988888776654 34 678999999975432 222222111 37999999999864
Q ss_pred --ccCCCeeEEEEcCCCCCCCCCCCCcHHHHHHHHhhccCCcEEEEE
Q 035593 145 --SLKDGFSGILVDLFSKGSLLSELEDPNTWEKLRQCLRKGGRIMVN 189 (269)
Q Consensus 145 --~~~~~yD~I~~d~~~~~~~~~~l~~~e~~~~~~~~L~pgG~l~~~ 189 (269)
.......+|+.|+... ..| ...-++.....+++|+.+++-
T Consensus 105 ~~~~~~~~vlVilDs~H~---~~h--vl~eL~~y~plv~~G~Y~IVe 146 (206)
T PF04989_consen 105 ELASPPHPVLVILDSSHT---HEH--VLAELEAYAPLVSPGSYLIVE 146 (206)
T ss_dssp SS----SSEEEEESS-------SS--HHHHHHHHHHT--TT-EEEET
T ss_pred HhhccCCceEEEECCCcc---HHH--HHHHHHHhCccCCCCCEEEEE
Confidence 1234566888876421 112 456777799999999999873
No 251
>PF01861 DUF43: Protein of unknown function DUF43; InterPro: IPR002723 This family of prokaryotic proteins have not been characterised. All the members are 350-400 amino acids long.; PDB: 2QM3_A.
Probab=97.31 E-value=0.0026 Score=54.39 Aligned_cols=103 Identities=13% Similarity=-0.018 Sum_probs=60.0
Q ss_pred CCCcEEEEcCcccHHHHHHHHHCCCceEEEEECChHHHHHHHHhcCccccccCCCCcEEEEEcccccc---ccCCCeeEE
Q 035593 77 PPGPIGILGFGAGSAARLILDLYPEAVIHGWELDPSVIKVAREFFALEKLEKSYPDRLFVYVGNALKA---SLKDGFSGI 153 (269)
Q Consensus 77 ~~~~VL~iG~G~G~~~~~l~~~~p~~~v~~vEidp~~~~~a~~~~~~~~~~~~~~~rv~~~~~D~~~~---~~~~~yD~I 153 (269)
..++||.||=..-......+. .+..+|+++|||+.+++.-++.....+ -.++.+..|.+.- ...++||++
T Consensus 44 ~gk~il~lGDDDLtSlA~al~-~~~~~I~VvDiDeRll~fI~~~a~~~g------l~i~~~~~DlR~~LP~~~~~~fD~f 116 (243)
T PF01861_consen 44 EGKRILFLGDDDLTSLALALT-GLPKRITVVDIDERLLDFINRVAEEEG------LPIEAVHYDLRDPLPEELRGKFDVF 116 (243)
T ss_dssp TT-EEEEES-TT-HHHHHHHH-T--SEEEEE-S-HHHHHHHHHHHHHHT--------EEEE---TTS---TTTSS-BSEE
T ss_pred cCCEEEEEcCCcHHHHHHHhh-CCCCeEEEEEcCHHHHHHHHHHHHHcC------CceEEEEecccccCCHHHhcCCCEE
Confidence 588999999776655444443 356799999999999998887653222 2499999999986 346899999
Q ss_pred EEcCCCCCCCCCCCCcHHHHHHHHhhccCCc-EEEEEec
Q 035593 154 LVDLFSKGSLLSELEDPNTWEKLRQCLRKGG-RIMVNVG 191 (269)
Q Consensus 154 ~~d~~~~~~~~~~l~~~e~~~~~~~~L~pgG-~l~~~~~ 191 (269)
+.|.+-. +.. -.-|+....+.||..| ...+.+.
T Consensus 117 ~TDPPyT---~~G--~~LFlsRgi~~Lk~~g~~gy~~~~ 150 (243)
T PF01861_consen 117 FTDPPYT---PEG--LKLFLSRGIEALKGEGCAGYFGFT 150 (243)
T ss_dssp EE---SS---HHH--HHHHHHHHHHTB-STT-EEEEEE-
T ss_pred EeCCCCC---HHH--HHHHHHHHHHHhCCCCceEEEEEe
Confidence 9985421 111 1358889999999877 4444443
No 252
>PF07091 FmrO: Ribosomal RNA methyltransferase (FmrO); PDB: 3LCU_A 3LCV_B 3FRH_A 3FRI_A 3B89_A 3FZG_A.
Probab=97.31 E-value=0.00093 Score=57.36 Aligned_cols=76 Identities=20% Similarity=0.223 Sum_probs=57.1
Q ss_pred CCCCCCcEEEEcCcccHHHHHHHHHCCCceEEEEECChHHHHHHHHhcCccccccCCCCcEEEEEccccccccCCCeeEE
Q 035593 74 PILPPGPIGILGFGAGSAARLILDLYPEAVIHGWELDPSVIKVAREFFALEKLEKSYPDRLFVYVGNALKASLKDGFSGI 153 (269)
Q Consensus 74 ~l~~~~~VL~iG~G~G~~~~~l~~~~p~~~v~~vEidp~~~~~a~~~~~~~~~~~~~~~rv~~~~~D~~~~~~~~~yD~I 153 (269)
.+.++.+|+|||||.--++.-+....+++.+.++|||..+++....++..- ....++...|...-......|+.
T Consensus 102 ~~~~p~sVlDigCGlNPlalp~~~~~~~a~Y~a~DID~~~ve~l~~~l~~l------~~~~~~~v~Dl~~~~~~~~~Dla 175 (251)
T PF07091_consen 102 RIPPPDSVLDIGCGLNPLALPWMPEAPGATYIAYDIDSQLVEFLNAFLAVL------GVPHDARVRDLLSDPPKEPADLA 175 (251)
T ss_dssp CS---SEEEEET-TTCHHHHHTTTSSTT-EEEEEESBHHHHHHHHHHHHHT------T-CEEEEEE-TTTSHTTSEESEE
T ss_pred cCCCCchhhhhhccCCceehhhcccCCCcEEEEEeCCHHHHHHHHHHHHhh------CCCcceeEeeeeccCCCCCcchh
Confidence 344699999999999999887776666889999999999999999987643 35678888887766667789999
Q ss_pred EE
Q 035593 154 LV 155 (269)
Q Consensus 154 ~~ 155 (269)
++
T Consensus 176 Ll 177 (251)
T PF07091_consen 176 LL 177 (251)
T ss_dssp EE
T ss_pred hH
Confidence 85
No 253
>KOG1122 consensus tRNA and rRNA cytosine-C5-methylase (nucleolar protein NOL1/NOP2) [RNA processing and modification]
Probab=97.28 E-value=0.0035 Score=57.36 Aligned_cols=137 Identities=15% Similarity=0.133 Sum_probs=97.1
Q ss_pred CCCcEEEEcCcccHHHHHHHHHCCC-ceEEEEECChHHHHHHHHhcCccccccCCCCcEEEEEcccccc---ccCCCeeE
Q 035593 77 PPGPIGILGFGAGSAARLILDLYPE-AVIHGWELDPSVIKVAREFFALEKLEKSYPDRLFVYVGNALKA---SLKDGFSG 152 (269)
Q Consensus 77 ~~~~VL~iG~G~G~~~~~l~~~~p~-~~v~~vEidp~~~~~a~~~~~~~~~~~~~~~rv~~~~~D~~~~---~~~~~yD~ 152 (269)
|..+|||+.+..|.=+.+++....+ ..|.+.|.+..-++..+.++..-+ -.+..+...|++++ ...++||-
T Consensus 241 ~gERIlDmcAAPGGKTt~IAalMkn~G~I~AnD~n~~r~~~l~~n~~rlG-----v~ntiv~n~D~~ef~~~~~~~~fDR 315 (460)
T KOG1122|consen 241 PGERILDMCAAPGGKTTHIAALMKNTGVIFANDSNENRLKSLKANLHRLG-----VTNTIVSNYDGREFPEKEFPGSFDR 315 (460)
T ss_pred CCCeecchhcCCCchHHHHHHHHcCCceEEecccchHHHHHHHHHHHHhC-----CCceEEEccCcccccccccCcccce
Confidence 5789999999999888888876654 599999999988887776652111 24578888999987 23348999
Q ss_pred EEEcCCCCC-CCC---C--------------CCCcHHHHHHHHhhccCCcEEEEEecCCCccccccccchhHHHHHHHHH
Q 035593 153 ILVDLFSKG-SLL---S--------------ELEDPNTWEKLRQCLRKGGRIMVNVGGSCVEAEDSRRDGKVVMEATLKA 214 (269)
Q Consensus 153 I~~d~~~~~-~~~---~--------------~l~~~e~~~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 214 (269)
|++|++-+. ++. + .-...+.|..+...+++||+|+....+.... -...++..
T Consensus 316 VLLDAPCSGtgvi~K~~~vkt~k~~~di~~~~~LQr~LllsAi~lv~~GGvLVYSTCSI~~~----------ENE~vV~y 385 (460)
T KOG1122|consen 316 VLLDAPCSGTGVISKDQSVKTNKTVKDILRYAHLQRELLLSAIDLVKAGGVLVYSTCSITVE----------ENEAVVDY 385 (460)
T ss_pred eeecCCCCCCcccccccccccchhHHHHHHhHHHHHHHHHHHHhhccCCcEEEEEeeecchh----------hhHHHHHH
Confidence 999986653 110 0 0124578888999999999999988776431 13455665
Q ss_pred HHHHhcCceEEEEcC
Q 035593 215 MHKVFGKKLYVLSLG 229 (269)
Q Consensus 215 l~~~F~~~v~~~~~~ 229 (269)
.-.-|| .+-+.+++
T Consensus 386 aL~K~p-~~kL~p~~ 399 (460)
T KOG1122|consen 386 ALKKRP-EVKLVPTG 399 (460)
T ss_pred HHHhCC-ceEecccc
Confidence 666675 46666544
No 254
>KOG2730 consensus Methylase [General function prediction only]
Probab=97.24 E-value=0.00044 Score=57.99 Aligned_cols=74 Identities=19% Similarity=0.193 Sum_probs=57.4
Q ss_pred CCCcEEEEcCcccHHHHHHHHHCCCceEEEEECChHHHHHHHHhcCccccccCCCCcEEEEEcccccc-----ccCCCee
Q 035593 77 PPGPIGILGFGAGSAARLILDLYPEAVIHGWELDPSVIKVAREFFALEKLEKSYPDRLFVYVGNALKA-----SLKDGFS 151 (269)
Q Consensus 77 ~~~~VL~iG~G~G~~~~~l~~~~p~~~v~~vEidp~~~~~a~~~~~~~~~~~~~~~rv~~~~~D~~~~-----~~~~~yD 151 (269)
....|+|.-||.|+.+...+.+ ...|.++||||.-+..||.++...+. .+|+++++||..+. .....+|
T Consensus 94 ~~~~iidaf~g~gGntiqfa~~--~~~VisIdiDPikIa~AkhNaeiYGI----~~rItFI~GD~ld~~~~lq~~K~~~~ 167 (263)
T KOG2730|consen 94 NAEVIVDAFCGVGGNTIQFALQ--GPYVIAIDIDPVKIACARHNAEVYGV----PDRITFICGDFLDLASKLKADKIKYD 167 (263)
T ss_pred CcchhhhhhhcCCchHHHHHHh--CCeEEEEeccHHHHHHHhccceeecC----CceeEEEechHHHHHHHHhhhhheee
Confidence 5677888888888777776664 56899999999999999999865432 35999999999886 2344577
Q ss_pred EEEEc
Q 035593 152 GILVD 156 (269)
Q Consensus 152 ~I~~d 156 (269)
+++..
T Consensus 168 ~vf~s 172 (263)
T KOG2730|consen 168 CVFLS 172 (263)
T ss_pred eeecC
Confidence 88754
No 255
>COG2384 Predicted SAM-dependent methyltransferase [General function prediction only]
Probab=97.24 E-value=0.0031 Score=53.01 Aligned_cols=104 Identities=15% Similarity=0.167 Sum_probs=84.0
Q ss_pred CCCcEEEEcCcccHHHHHHHHHCCCceEEEEECChHHHHHHHHhcCccccccCCCCcEEEEEcccccc-ccCCCeeEEEE
Q 035593 77 PPGPIGILGFGAGSAARLILDLYPEAVIHGWELDPSVIKVAREFFALEKLEKSYPDRLFVYVGNALKA-SLKDGFSGILV 155 (269)
Q Consensus 77 ~~~~VL~iG~G~G~~~~~l~~~~p~~~v~~vEidp~~~~~a~~~~~~~~~~~~~~~rv~~~~~D~~~~-~~~~~yD~I~~ 155 (269)
...++.||||--+.++.+|.+..+...++++|+++.-++.|.+++..+. ..+++++..+|+... ..+...|+|++
T Consensus 16 ~~~~iaDIGsDHAYLp~~Lv~~~~~~~~va~eV~~gpl~~a~~~v~~~~----l~~~i~vr~~dgl~~l~~~d~~d~ivI 91 (226)
T COG2384 16 QGARIADIGSDHAYLPIYLVKNNPASTAVAGEVVPGPLESAIRNVKKNN----LSERIDVRLGDGLAVLELEDEIDVIVI 91 (226)
T ss_pred cCCceeeccCchhHhHHHHHhcCCcceEEEeecccCHHHHHHHHHHhcC----CcceEEEeccCCccccCccCCcCEEEE
Confidence 4556999999999999999998888899999999999999999986554 357999999999766 66678999998
Q ss_pred cCCCCCCCCCCCCcHHHHHHHHhhccCCcEEEEEe
Q 035593 156 DLFSKGSLLSELEDPNTWEKLRQCLRKGGRIMVNV 190 (269)
Q Consensus 156 d~~~~~~~~~~l~~~e~~~~~~~~L~pgG~l~~~~ 190 (269)
....+. .-.+++++-.+.|+.-=.+++.-
T Consensus 92 AGMGG~------lI~~ILee~~~~l~~~~rlILQP 120 (226)
T COG2384 92 AGMGGT------LIREILEEGKEKLKGVERLILQP 120 (226)
T ss_pred eCCcHH------HHHHHHHHhhhhhcCcceEEECC
Confidence 654431 13588888888887655566543
No 256
>PF04672 Methyltransf_19: S-adenosyl methyltransferase; InterPro: IPR006764 This is a family of uncharacterised proteins.; PDB: 3GIW_A 3GO4_A 2QE6_A.
Probab=97.23 E-value=0.0045 Score=53.85 Aligned_cols=109 Identities=17% Similarity=0.198 Sum_probs=64.5
Q ss_pred CCcEEEEcCc--ccHHHHHHHH-HCCCceEEEEECChHHHHHHHHhcCccccccCCCCcEEEEEcccccc----c-----
Q 035593 78 PGPIGILGFG--AGSAARLILD-LYPEAVIHGWELDPSVIKVAREFFALEKLEKSYPDRLFVYVGNALKA----S----- 145 (269)
Q Consensus 78 ~~~VL~iG~G--~G~~~~~l~~-~~p~~~v~~vEidp~~~~~a~~~~~~~~~~~~~~~rv~~~~~D~~~~----~----- 145 (269)
-...|||||| +-....++++ ..|+++|+-||.||-++..++..+.-++ ..+..++.+|.++- .
T Consensus 69 IrQFLDlGsGlPT~~nvHevAq~~~P~aRVVYVD~DPvv~ah~ralL~~~~-----~g~t~~v~aD~r~p~~iL~~p~~~ 143 (267)
T PF04672_consen 69 IRQFLDLGSGLPTAGNVHEVAQRVAPDARVVYVDNDPVVLAHARALLADNP-----RGRTAYVQADLRDPEAILAHPEVR 143 (267)
T ss_dssp --EEEEET--S--SS-HHHHHHHH-TT-EEEEEESSHHHHHCCHHHHTT-T-----TSEEEEEE--TT-HHHHHCSHHHH
T ss_pred cceEEEcccCCCCCCCHhHHHHhhCCCceEEEECCCchHHHHHHhhhcCCC-----CccEEEEeCCCCCHHHHhcCHHHH
Confidence 3579999999 3345555544 3589999999999999999998875321 22499999999974 1
Q ss_pred ----cCCCeeEEEEcCCCCCCCCCCCCcHHHHHHHHhhccCCcEEEEEecCC
Q 035593 146 ----LKDGFSGILVDLFSKGSLLSELEDPNTWEKLRQCLRKGGRIMVNVGGS 193 (269)
Q Consensus 146 ----~~~~yD~I~~d~~~~~~~~~~l~~~e~~~~~~~~L~pgG~l~~~~~~~ 193 (269)
..+..=++++..... ++..-...+.++.++..|.||..|++.....
T Consensus 144 ~~lD~~rPVavll~~vLh~--v~D~~dp~~iv~~l~d~lapGS~L~ish~t~ 193 (267)
T PF04672_consen 144 GLLDFDRPVAVLLVAVLHF--VPDDDDPAGIVARLRDALAPGSYLAISHATD 193 (267)
T ss_dssp CC--TTS--EEEECT-GGG--S-CGCTHHHHHHHHHCCS-TT-EEEEEEEB-
T ss_pred hcCCCCCCeeeeeeeeecc--CCCccCHHHHHHHHHHhCCCCceEEEEecCC
Confidence 234444555443211 2222234689999999999999999876543
No 257
>KOG1253 consensus tRNA methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=97.18 E-value=0.00038 Score=64.66 Aligned_cols=103 Identities=14% Similarity=0.068 Sum_probs=86.4
Q ss_pred CCcEEEEcCcccHHHHHHHHHCCCc-eEEEEECChHHHHHHHHhcCccccccCCCCcEEEEEcccccc--c---cCCCee
Q 035593 78 PGPIGILGFGAGSAARLILDLYPEA-VIHGWELDPSVIKVAREFFALEKLEKSYPDRLFVYVGNALKA--S---LKDGFS 151 (269)
Q Consensus 78 ~~~VL~iG~G~G~~~~~l~~~~p~~-~v~~vEidp~~~~~a~~~~~~~~~~~~~~~rv~~~~~D~~~~--~---~~~~yD 151 (269)
+.+||+.=+++|.-+...++..|++ +|++-|.++..++..+++..++. ....++..+.|+... . ....||
T Consensus 110 ~l~vLealsAtGlrslRya~El~~v~~v~AnD~~~~aV~~i~~Nv~~N~----v~~ive~~~~DA~~lM~~~~~~~~~FD 185 (525)
T KOG1253|consen 110 SLRVLEALSATGLRSLRYAKELPGVRQVVANDLNENAVTSIQRNVELNG----VEDIVEPHHSDANVLMYEHPMVAKFFD 185 (525)
T ss_pred cchHHHHhhhhhHHHHHHHHHhcchhhhcccCCCHHHHHHHHhhhhhcC----chhhcccccchHHHHHHhccccccccc
Confidence 6789998889999888888778865 99999999999999999887653 356789999999876 3 347999
Q ss_pred EEEEcCCCCCCCCCCCCcHHHHHHHHhhccCCcEEEEEecC
Q 035593 152 GILVDLFSKGSLLSELEDPNTWEKLRQCLRKGGRIMVNVGG 192 (269)
Q Consensus 152 ~I~~d~~~~~~~~~~l~~~e~~~~~~~~L~pgG~l~~~~~~ 192 (269)
+|=+|.|... ..|+..+.+.++.||+|.+.+..
T Consensus 186 vIDLDPyGs~--------s~FLDsAvqav~~gGLL~vT~TD 218 (525)
T KOG1253|consen 186 VIDLDPYGSP--------SPFLDSAVQAVRDGGLLCVTCTD 218 (525)
T ss_pred eEecCCCCCc--------cHHHHHHHHHhhcCCEEEEEecc
Confidence 9999988753 47999999999999999987643
No 258
>COG0287 TyrA Prephenate dehydrogenase [Amino acid transport and metabolism]
Probab=97.18 E-value=0.0058 Score=53.86 Aligned_cols=145 Identities=21% Similarity=0.288 Sum_probs=88.2
Q ss_pred CcEEEEcCc--ccHHHHHHHHHCCCceEEEEECChHHHHHHHHhcCccccccCCCCcEEEEEccccccccCCCeeEEEEc
Q 035593 79 GPIGILGFG--AGSAARLILDLYPEAVIHGWELDPSVIKVAREFFALEKLEKSYPDRLFVYVGNALKASLKDGFSGILVD 156 (269)
Q Consensus 79 ~~VL~iG~G--~G~~~~~l~~~~p~~~v~~vEidp~~~~~a~~~~~~~~~~~~~~~rv~~~~~D~~~~~~~~~yD~I~~d 156 (269)
.+|+.+|+| +|++++.+.+......|++.|.+..-.+.+.+. +... .. .+..........|+|++.
T Consensus 4 ~~v~IvG~GliG~s~a~~l~~~g~~v~i~g~d~~~~~~~~a~~l-gv~d-------~~----~~~~~~~~~~~aD~Viva 71 (279)
T COG0287 4 MKVGIVGLGLMGGSLARALKEAGLVVRIIGRDRSAATLKAALEL-GVID-------EL----TVAGLAEAAAEADLVIVA 71 (279)
T ss_pred cEEEEECCchHHHHHHHHHHHcCCeEEEEeecCcHHHHHHHhhc-Cccc-------cc----ccchhhhhcccCCEEEEe
Confidence 579999999 788889988866666788888888777776543 2210 00 011101334568999985
Q ss_pred CCCCCCCCCCCCcHHHHHHHHhhccCCcEEEEEecCCCccccccccchhHHHHHHHHHHHHHhcCceEEEE---cCC---
Q 035593 157 LFSKGSLLSELEDPNTWEKLRQCLRKGGRIMVNVGGSCVEAEDSRRDGKVVMEATLKAMHKVFGKKLYVLS---LGN--- 230 (269)
Q Consensus 157 ~~~~~~~~~~l~~~e~~~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~F~~~v~~~~---~~~--- 230 (269)
.+-. .+.++++++...|++ |.+++.+.+. ...+++.+++..+..+..+. ...
T Consensus 72 vPi~-------~~~~~l~~l~~~l~~-g~iv~Dv~S~--------------K~~v~~a~~~~~~~~~~~vg~HPM~G~~~ 129 (279)
T COG0287 72 VPIE-------ATEEVLKELAPHLKK-GAIVTDVGSV--------------KSSVVEAMEKYLPGDVRFVGGHPMFGPEA 129 (279)
T ss_pred ccHH-------HHHHHHHHhcccCCC-CCEEEecccc--------------cHHHHHHHHHhccCCCeeEecCCCCCCcc
Confidence 4322 267899999998988 5566677654 24567777777764333332 111
Q ss_pred ----CCceEEEEecCCCCCHHHHHHhcCcchh
Q 035593 231 ----RKDDSLIALTGELPDLDDWKRALPRSLK 258 (269)
Q Consensus 231 ----~~n~v~~~~~~~~~~~~~~~~~l~~~~~ 258 (269)
..|.+++.+..+..+ .+|...+-+.+.
T Consensus 130 ~~~lf~~~~~vltp~~~~~-~~~~~~~~~~~~ 160 (279)
T COG0287 130 DAGLFENAVVVLTPSEGTE-KEWVEEVKRLWE 160 (279)
T ss_pred cccccCCCEEEEcCCCCCC-HHHHHHHHHHHH
Confidence 145666666665544 444444433333
No 259
>PF06962 rRNA_methylase: Putative rRNA methylase; InterPro: IPR010719 This family contains a number of putative rRNA methylases.; PDB: 3EEY_H 3LBY_A 3MTI_A.
Probab=97.10 E-value=0.0086 Score=47.09 Aligned_cols=88 Identities=15% Similarity=0.190 Sum_probs=57.8
Q ss_pred eEEEEECChHHHHHHHHhcCccccccCCCCcEEEEEcccccc---ccCCCeeEEEEcC-CCCCC----CCCCCCcHHHHH
Q 035593 103 VIHGWELDPSVIKVAREFFALEKLEKSYPDRLFVYVGNALKA---SLKDGFSGILVDL-FSKGS----LLSELEDPNTWE 174 (269)
Q Consensus 103 ~v~~vEidp~~~~~a~~~~~~~~~~~~~~~rv~~~~~D~~~~---~~~~~yD~I~~d~-~~~~~----~~~~l~~~e~~~ 174 (269)
+|.+.||.++.++.+++++.-.. ...|++++...=... -..++.|+++.++ |-+.+ ....-.|...++
T Consensus 1 kVyaFDIQ~~Ai~~T~~rL~~~~----~~~~v~li~~sHe~l~~~i~~~~v~~~iFNLGYLPggDk~i~T~~~TTl~Al~ 76 (140)
T PF06962_consen 1 KVYAFDIQEEAIENTRERLEEAG----LEDRVTLILDSHENLDEYIPEGPVDAAIFNLGYLPGGDKSITTKPETTLKALE 76 (140)
T ss_dssp EEEEEES-HHHHHHHHHHHHHTT-----GSGEEEEES-GGGGGGT--S--EEEEEEEESB-CTS-TTSB--HHHHHHHHH
T ss_pred CEEEEECHHHHHHHHHHHHHhcC----CCCcEEEEECCHHHHHhhCccCCcCEEEEECCcCCCCCCCCCcCcHHHHHHHH
Confidence 68999999999999999875322 124899998876665 2225899999874 22211 011123468999
Q ss_pred HHHhhccCCcEEEEEecCCC
Q 035593 175 KLRQCLRKGGRIMVNVGGSC 194 (269)
Q Consensus 175 ~~~~~L~pgG~l~~~~~~~~ 194 (269)
.+.+.|+|||++++-++..+
T Consensus 77 ~al~lL~~gG~i~iv~Y~GH 96 (140)
T PF06962_consen 77 AALELLKPGGIITIVVYPGH 96 (140)
T ss_dssp HHHHHEEEEEEEEEEE--ST
T ss_pred HHHHhhccCCEEEEEEeCCC
Confidence 99999999999999887654
No 260
>KOG3045 consensus Predicted RNA methylase involved in rRNA processing [RNA processing and modification]
Probab=97.10 E-value=0.0014 Score=56.27 Aligned_cols=85 Identities=14% Similarity=0.112 Sum_probs=62.5
Q ss_pred CCcEEEEcCcccHHHHHHHHHCCCceEEEEECChHHHHHHHHhcCccccccCCCCcEEEEEcccccc-ccCCCeeEEEEc
Q 035593 78 PGPIGILGFGAGSAARLILDLYPEAVIHGWELDPSVIKVAREFFALEKLEKSYPDRLFVYVGNALKA-SLKDGFSGILVD 156 (269)
Q Consensus 78 ~~~VL~iG~G~G~~~~~l~~~~p~~~v~~vEidp~~~~~a~~~~~~~~~~~~~~~rv~~~~~D~~~~-~~~~~yD~I~~d 156 (269)
...|.|+|||-+-++.- -.-.|...|+-+ .+-+++..|++.. ..+++.|+++.+
T Consensus 181 ~~vIaD~GCGEakiA~~-----~~~kV~SfDL~a--------------------~~~~V~~cDm~~vPl~d~svDvaV~C 235 (325)
T KOG3045|consen 181 NIVIADFGCGEAKIASS-----ERHKVHSFDLVA--------------------VNERVIACDMRNVPLEDESVDVAVFC 235 (325)
T ss_pred ceEEEecccchhhhhhc-----cccceeeeeeec--------------------CCCceeeccccCCcCccCcccEEEee
Confidence 46789999999998862 123677777632 2346778899998 678899999977
Q ss_pred CCCCCCCCCCCCcHHHHHHHHhhccCCcEEEEEecC
Q 035593 157 LFSKGSLLSELEDPNTWEKLRQCLRKGGRIMVNVGG 192 (269)
Q Consensus 157 ~~~~~~~~~~l~~~e~~~~~~~~L~pgG~l~~~~~~ 192 (269)
+.-.. . .-.+|+.++.+.|++||.+-+--..
T Consensus 236 LSLMg---t--n~~df~kEa~RiLk~gG~l~IAEv~ 266 (325)
T KOG3045|consen 236 LSLMG---T--NLADFIKEANRILKPGGLLYIAEVK 266 (325)
T ss_pred Hhhhc---c--cHHHHHHHHHHHhccCceEEEEehh
Confidence 53221 1 1368999999999999998775543
No 261
>PF05971 Methyltransf_10: Protein of unknown function (DUF890); InterPro: IPR010286 This family consists of several conserved hypothetical proteins from both eukaryotes and prokaryotes. The function of members of this family are unknown but are predicted to be SAM-dependent methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 2H00_A.
Probab=97.08 E-value=0.0014 Score=58.10 Aligned_cols=78 Identities=14% Similarity=0.019 Sum_probs=46.2
Q ss_pred CCcEEEEcCcccHHHHHHHHHCCCceEEEEECChHHHHHHHHhcCccccccCCCCcEEEEEccccc--c----ccCCCee
Q 035593 78 PGPIGILGFGAGSAARLILDLYPEAVIHGWELDPSVIKVAREFFALEKLEKSYPDRLFVYVGNALK--A----SLKDGFS 151 (269)
Q Consensus 78 ~~~VL~iG~G~G~~~~~l~~~~p~~~v~~vEidp~~~~~a~~~~~~~~~~~~~~~rv~~~~~D~~~--~----~~~~~yD 151 (269)
.-++||||+|+.++=-.|..+..+.+++|.|||+..++.|++....++. -..+|+++...-.. + ...+.||
T Consensus 103 ~v~glDIGTGAscIYpLLg~~~~~W~fvaTdID~~sl~~A~~nv~~N~~---L~~~I~l~~~~~~~~i~~~i~~~~e~~d 179 (299)
T PF05971_consen 103 KVRGLDIGTGASCIYPLLGAKLYGWSFVATDIDPKSLESARENVERNPN---LESRIELRKQKNPDNIFDGIIQPNERFD 179 (299)
T ss_dssp --EEEEES-TTTTHHHHHHHHHH--EEEEEES-HHHHHHHHHHHHHT-T----TTTEEEEE--ST-SSTTTSTT--S-EE
T ss_pred ceEeecCCccHHHHHHHHhhhhcCCeEEEecCCHHHHHHHHHHHHhccc---cccceEEEEcCCccccchhhhcccceee
Confidence 4689999999876643333333489999999999999999998765411 25789998764322 2 3456899
Q ss_pred EEEEcCC
Q 035593 152 GILVDLF 158 (269)
Q Consensus 152 ~I~~d~~ 158 (269)
+.+++.+
T Consensus 180 ftmCNPP 186 (299)
T PF05971_consen 180 FTMCNPP 186 (299)
T ss_dssp EEEE---
T ss_pred EEecCCc
Confidence 9999753
No 262
>PF13679 Methyltransf_32: Methyltransferase domain
Probab=97.06 E-value=0.0013 Score=51.90 Aligned_cols=77 Identities=19% Similarity=0.168 Sum_probs=52.4
Q ss_pred CCCCcEEEEcCcccHHHHHHHHH----CCCceEEEEECChHHHHHHHHhcCccccccCCCCcEEEEEccccccccCCCee
Q 035593 76 LPPGPIGILGFGAGSAARLILDL----YPEAVIHGWELDPSVIKVAREFFALEKLEKSYPDRLFVYVGNALKASLKDGFS 151 (269)
Q Consensus 76 ~~~~~VL~iG~G~G~~~~~l~~~----~p~~~v~~vEidp~~~~~a~~~~~~~~~~~~~~~rv~~~~~D~~~~~~~~~yD 151 (269)
.+...|+|+|+|-|.++..|+.. .++.+|++||.++..++.|.++..... .....+++...++..........+
T Consensus 24 ~~~~~vvD~GsG~GyLs~~La~~l~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~ 101 (141)
T PF13679_consen 24 KRCITVVDLGSGKGYLSRALAHLLCNSSPNLRVLGIDCNESLVESAQKRAQKLG--SDLEKRLSFIQGDIADESSSDPPD 101 (141)
T ss_pred CCCCEEEEeCCChhHHHHHHHHHHHhcCCCCeEEEEECCcHHHHHHHHHHHHhc--chhhccchhhccchhhhcccCCCe
Confidence 46889999999999999999982 268899999999999999987753211 001234555555444333334444
Q ss_pred EEE
Q 035593 152 GIL 154 (269)
Q Consensus 152 ~I~ 154 (269)
+++
T Consensus 102 ~~v 104 (141)
T PF13679_consen 102 ILV 104 (141)
T ss_pred EEE
Confidence 444
No 263
>PF03141 Methyltransf_29: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR004159 Members of this family of hypothetical plant proteins are putative methyltransferases. ; GO: 0008168 methyltransferase activity
Probab=96.99 E-value=0.0015 Score=61.18 Aligned_cols=114 Identities=17% Similarity=0.146 Sum_probs=68.2
Q ss_pred chHHHHHhc-CCCCCC---CCcEEEEcCcccHHHHHHHHHCCCceEEE---EECChHHHHHHHHhcCccccccCCCCcEE
Q 035593 63 NTYFDAFAT-LPPILP---PGPIGILGFGAGSAARLILDLYPEAVIHG---WELDPSVIKVAREFFALEKLEKSYPDRLF 135 (269)
Q Consensus 63 ~~y~~~~~~-~~~l~~---~~~VL~iG~G~G~~~~~l~~~~p~~~v~~---vEidp~~~~~a~~~~~~~~~~~~~~~rv~ 135 (269)
..|.+.+.. ++.... -..+||+|||.|+++.+|+++ +..+.. -|..+..++.|.++ +++. -+.
T Consensus 99 ~~Yid~i~~~~~~~~~~g~iR~~LDvGcG~aSF~a~l~~r--~V~t~s~a~~d~~~~qvqfaleR-Gvpa-------~~~ 168 (506)
T PF03141_consen 99 DHYIDQIAEMIPLIKWGGGIRTALDVGCGVASFGAYLLER--NVTTMSFAPNDEHEAQVQFALER-GVPA-------MIG 168 (506)
T ss_pred HHHHHHHHHHhhccccCCceEEEEeccceeehhHHHHhhC--CceEEEcccccCCchhhhhhhhc-Ccch-------hhh
Confidence 468877753 333222 467999999999999999883 433222 24455566666554 2221 111
Q ss_pred EEEcccccc-ccCCCeeEEEEcCCCCCCCCCCCCcHHHHHHHHhhccCCcEEEEEec
Q 035593 136 VYVGNALKA-SLKDGFSGILVDLFSKGSLLSELEDPNTWEKLRQCLRKGGRIMVNVG 191 (269)
Q Consensus 136 ~~~~D~~~~-~~~~~yD~I~~d~~~~~~~~~~l~~~e~~~~~~~~L~pgG~l~~~~~ 191 (269)
++ +. ..+ .....||+|-+.-... +.+....-++-++-+.|+|||.++....
T Consensus 169 ~~-~s-~rLPfp~~~fDmvHcsrc~i---~W~~~~g~~l~evdRvLRpGGyfv~S~p 220 (506)
T PF03141_consen 169 VL-GS-QRLPFPSNAFDMVHCSRCLI---PWHPNDGFLLFEVDRVLRPGGYFVLSGP 220 (506)
T ss_pred hh-cc-ccccCCccchhhhhcccccc---cchhcccceeehhhhhhccCceEEecCC
Confidence 11 11 223 5678899996532221 2222223477788999999999987654
No 264
>COG1063 Tdh Threonine dehydrogenase and related Zn-dependent dehydrogenases [Amino acid transport and metabolism / General function prediction only]
Probab=96.96 E-value=0.012 Score=53.58 Aligned_cols=97 Identities=19% Similarity=0.214 Sum_probs=69.8
Q ss_pred CCcEEEEcCc-ccHHHHHHHHHCCCceEEEEECChHHHHHHHHhcCccccccCCCCcEEEEEc-cccc-c---ccCCCee
Q 035593 78 PGPIGILGFG-AGSAARLILDLYPEAVIHGWELDPSVIKVAREFFALEKLEKSYPDRLFVYVG-NALK-A---SLKDGFS 151 (269)
Q Consensus 78 ~~~VL~iG~G-~G~~~~~l~~~~p~~~v~~vEidp~~~~~a~~~~~~~~~~~~~~~rv~~~~~-D~~~-~---~~~~~yD 151 (269)
..+|+++|+| -|.++..+++.+...+|+++|++++-+++|+++++... +..... +... . .....+|
T Consensus 169 ~~~V~V~GaGpIGLla~~~a~~~Ga~~Viv~d~~~~Rl~~A~~~~g~~~--------~~~~~~~~~~~~~~~~t~g~g~D 240 (350)
T COG1063 169 GGTVVVVGAGPIGLLAIALAKLLGASVVIVVDRSPERLELAKEAGGADV--------VVNPSEDDAGAEILELTGGRGAD 240 (350)
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCCceEEEeCCCHHHHHHHHHhCCCeE--------eecCccccHHHHHHHHhCCCCCC
Confidence 4489999999 57777888887777899999999999999999875321 111111 2111 1 3345799
Q ss_pred EEEEcCCCCCCCCCCCCcHHHHHHHHhhccCCcEEEEEecC
Q 035593 152 GILVDLFSKGSLLSELEDPNTWEKLRQCLRKGGRIMVNVGG 192 (269)
Q Consensus 152 ~I~~d~~~~~~~~~~l~~~e~~~~~~~~L~pgG~l~~~~~~ 192 (269)
++|-. .. ....++.+.+.++++|.+++.-..
T Consensus 241 ~vie~-~G---------~~~~~~~ai~~~r~gG~v~~vGv~ 271 (350)
T COG1063 241 VVIEA-VG---------SPPALDQALEALRPGGTVVVVGVY 271 (350)
T ss_pred EEEEC-CC---------CHHHHHHHHHHhcCCCEEEEEecc
Confidence 99842 21 356899999999999999886554
No 265
>COG4121 Uncharacterized conserved protein [Function unknown]
Probab=96.83 E-value=0.0026 Score=54.84 Aligned_cols=112 Identities=14% Similarity=0.047 Sum_probs=79.7
Q ss_pred CCcEEEEcCcccHHHHHHHHHCC------------CceEEEEECChHHHHHHHHhcCccc-----------cc-------
Q 035593 78 PGPIGILGFGAGSAARLILDLYP------------EAVIHGWELDPSVIKVAREFFALEK-----------LE------- 127 (269)
Q Consensus 78 ~~~VL~iG~G~G~~~~~l~~~~p------------~~~v~~vEidp~~~~~a~~~~~~~~-----------~~------- 127 (269)
.-.|+++|.|+|.....+.+.++ ..+++++|.+|.....++.....+. |.
T Consensus 59 ~~~i~E~gfgtglnfl~~~~~~~~~~~~~~~~~~~~l~~~S~e~~P~~~~~l~~l~~~pel~~~~~~l~~~~~~~~~~~~ 138 (252)
T COG4121 59 ILQILEIGFGTGLNFLTAHLAIGDARQAKLEVVLLDLKFDSIELDPFSPPKCPALWTVPFLCHLADALAPTGPLATYGCA 138 (252)
T ss_pred ceeehhhhcccchhHHHHHhhhhhhhhccccccccccceEEEEeCCCChhhhHHHhhhhhHHHHHHHHhhccCcccchhH
Confidence 45799999999998877765443 2378999998866544432110000 00
Q ss_pred --cC-CCCcEEEEEcccccc--ccCC---CeeEEEEcCCCCCCCCCCCCcHHHHHHHHhhccCCcEEEEEe
Q 035593 128 --KS-YPDRLFVYVGNALKA--SLKD---GFSGILVDLFSKGSLLSELEDPNTWEKLRQCLRKGGRIMVNV 190 (269)
Q Consensus 128 --~~-~~~rv~~~~~D~~~~--~~~~---~yD~I~~d~~~~~~~~~~l~~~e~~~~~~~~L~pgG~l~~~~ 190 (269)
.. ..-.+.++++|+... .... ++|+.+.|.|++. ..|.+++.+++..+++..++||.++...
T Consensus 139 r~~~~g~~~l~l~~gd~~~~~p~~~~~~~~~dAwflDgFsP~-kNP~mW~~e~l~~~a~~~~~~~~l~t~s 208 (252)
T COG4121 139 AAVRHGLLLLGLVIGDAGDGIPPVPRRRPGTDAWFLDGFRPV-KNPEMWEDELLNLMARIPYRDPTLATFA 208 (252)
T ss_pred HhhhcchheeeeeeeehhhcCCcccccccCccEEecCCcccc-CChhhccHHHHHHHHhhcCCCCceechH
Confidence 01 134678899999876 2233 7999999999874 5558899999999999999999998744
No 266
>KOG2198 consensus tRNA cytosine-5-methylases and related enzymes of the NOL1/NOP2/sun superfamily [Translation, ribosomal structure and biogenesis]
Probab=96.76 E-value=0.031 Score=50.57 Aligned_cols=115 Identities=15% Similarity=0.135 Sum_probs=81.7
Q ss_pred CCCCCcEEEEcCcccHHHHHHHHHCC----CceEEEEECChHHHHHHHHhcCccccccCCCCcEEEEEcccccc--c---
Q 035593 75 ILPPGPIGILGFGAGSAARLILDLYP----EAVIHGWELDPSVIKVAREFFALEKLEKSYPDRLFVYVGNALKA--S--- 145 (269)
Q Consensus 75 l~~~~~VL~iG~G~G~~~~~l~~~~p----~~~v~~vEidp~~~~~a~~~~~~~~~~~~~~~rv~~~~~D~~~~--~--- 145 (269)
+.|..+|||+++..|+=+..+++..- ...|++=|.|+.-+...++-...- ..+.+.+...|+..+ .
T Consensus 153 v~p~~~VLDmCAAPG~Kt~qLLeal~~~~~~g~vvaND~d~~R~~~L~~q~~~l-----~~~~~~v~~~~~~~~p~~~~~ 227 (375)
T KOG2198|consen 153 VKPGDKVLDMCAAPGGKTAQLLEALHKDPTRGYVVANDVDPKRLNMLVHQLKRL-----PSPNLLVTNHDASLFPNIYLK 227 (375)
T ss_pred cCCCCeeeeeccCCCccHHHHHHHHhcCCCCCeeEecccCHHHHHHHHHHHhcc-----CCcceeeecccceeccccccc
Confidence 55899999999999999888877532 238999999998877766654322 246677777777655 1
Q ss_pred -----cCCCeeEEEEcCCCC-CCCC----------------C--CCCcHHHHHHHHhhccCCcEEEEEecCCC
Q 035593 146 -----LKDGFSGILVDLFSK-GSLL----------------S--ELEDPNTWEKLRQCLRKGGRIMVNVGGSC 194 (269)
Q Consensus 146 -----~~~~yD~I~~d~~~~-~~~~----------------~--~l~~~e~~~~~~~~L~pgG~l~~~~~~~~ 194 (269)
....||-|++|+.-. ++.. . +......+....+.|++||.++....+-.
T Consensus 228 ~~~~~~~~~fDrVLvDVPCS~Dgt~rk~~~i~~~~w~~~~~~~L~~LQ~~iL~rgl~lLk~GG~lVYSTCSLn 300 (375)
T KOG2198|consen 228 DGNDKEQLKFDRVLVDVPCSGDGTLRKNPNIWKEGWKTQRALGLHALQLRILRRGLRLLKVGGRLVYSTCSLN 300 (375)
T ss_pred cCchhhhhhcceeEEecccCCCcccccCchHhhhhhhhhhccCChHHHHHHHHHHHHHhcCCCEEEEeccCCC
Confidence 235799999997433 2210 0 12234788889999999999999876653
No 267
>KOG0024 consensus Sorbitol dehydrogenase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=96.73 E-value=0.011 Score=52.46 Aligned_cols=106 Identities=13% Similarity=0.043 Sum_probs=71.6
Q ss_pred CCCCCcEEEEcCc-ccHHHHHHHHHCCCceEEEEECChHHHHHHHHhcCccccccCCCCcEEEEEcccccc----ccCCC
Q 035593 75 ILPPGPIGILGFG-AGSAARLILDLYPEAVIHGWELDPSVIKVAREFFALEKLEKSYPDRLFVYVGNALKA----SLKDG 149 (269)
Q Consensus 75 l~~~~~VL~iG~G-~G~~~~~l~~~~p~~~v~~vEidp~~~~~a~~~~~~~~~~~~~~~rv~~~~~D~~~~----~~~~~ 149 (269)
+.+..+||++|+| .|..+...++.+...+|..+|+++.-+++||+ |+..... ....-. ...+.++. .....
T Consensus 167 vk~Gs~vLV~GAGPIGl~t~l~Aka~GA~~VVi~d~~~~Rle~Ak~-~Ga~~~~--~~~~~~-~~~~~~~~v~~~~g~~~ 242 (354)
T KOG0024|consen 167 VKKGSKVLVLGAGPIGLLTGLVAKAMGASDVVITDLVANRLELAKK-FGATVTD--PSSHKS-SPQELAELVEKALGKKQ 242 (354)
T ss_pred cccCCeEEEECCcHHHHHHHHHHHHcCCCcEEEeecCHHHHHHHHH-hCCeEEe--eccccc-cHHHHHHHHHhhccccC
Confidence 4468899999999 68888888888877899999999999999999 7643210 000000 11222222 12355
Q ss_pred eeEEEEcCCCCCCCCCCCCcHHHHHHHHhhccCCcEEEEEecCCC
Q 035593 150 FSGILVDLFSKGSLLSELEDPNTWEKLRQCLRKGGRIMVNVGGSC 194 (269)
Q Consensus 150 yD~I~~d~~~~~~~~~~l~~~e~~~~~~~~L~pgG~l~~~~~~~~ 194 (269)
+|+.|-..- ...-++..-..++.+|.+++-.++..
T Consensus 243 ~d~~~dCsG----------~~~~~~aai~a~r~gGt~vlvg~g~~ 277 (354)
T KOG0024|consen 243 PDVTFDCSG----------AEVTIRAAIKATRSGGTVVLVGMGAE 277 (354)
T ss_pred CCeEEEccC----------chHHHHHHHHHhccCCEEEEeccCCC
Confidence 898884321 23567778889999999777666653
No 268
>PRK09424 pntA NAD(P) transhydrogenase subunit alpha; Provisional
Probab=96.71 E-value=0.018 Score=54.85 Aligned_cols=108 Identities=19% Similarity=0.234 Sum_probs=63.6
Q ss_pred CCCCcEEEEcCc-ccHHHHHHHHHCCCceEEEEECChHHHHHHHHhcCcccc--ccCCCCc-----EEEEEccccc----
Q 035593 76 LPPGPIGILGFG-AGSAARLILDLYPEAVIHGWELDPSVIKVAREFFALEKL--EKSYPDR-----LFVYVGNALK---- 143 (269)
Q Consensus 76 ~~~~~VL~iG~G-~G~~~~~l~~~~p~~~v~~vEidp~~~~~a~~~~~~~~~--~~~~~~r-----v~~~~~D~~~---- 143 (269)
.++.+|+++|+| .|..+...++.. +++|+++|++++..+.+++ ++.... ....+.. ++....|..+
T Consensus 163 ~pg~kVlViGaG~iGL~Ai~~Ak~l-GA~V~a~D~~~~rle~aes-lGA~~v~i~~~e~~~~~~gya~~~s~~~~~~~~~ 240 (509)
T PRK09424 163 VPPAKVLVIGAGVAGLAAIGAAGSL-GAIVRAFDTRPEVAEQVES-MGAEFLELDFEEEGGSGDGYAKVMSEEFIKAEMA 240 (509)
T ss_pred cCCCEEEEECCcHHHHHHHHHHHHC-CCEEEEEeCCHHHHHHHHH-cCCeEEEeccccccccccchhhhcchhHHHHHHH
Confidence 368999999999 566666777654 5689999999999999988 342100 0000000 0000001000
Q ss_pred -c-ccCCCeeEEEEcCCCCCCCCCCCCcHHH-HHHHHhhccCCcEEEEEe
Q 035593 144 -A-SLKDGFSGILVDLFSKGSLLSELEDPNT-WEKLRQCLRKGGRIMVNV 190 (269)
Q Consensus 144 -~-~~~~~yD~I~~d~~~~~~~~~~l~~~e~-~~~~~~~L~pgG~l~~~~ 190 (269)
+ ...+.+|+||..+..+.... +.. .+.+.+.+||||+++.-.
T Consensus 241 ~~~~~~~gaDVVIetag~pg~~a-----P~lit~~~v~~mkpGgvIVdvg 285 (509)
T PRK09424 241 LFAEQAKEVDIIITTALIPGKPA-----PKLITAEMVASMKPGSVIVDLA 285 (509)
T ss_pred HHHhccCCCCEEEECCCCCcccC-----cchHHHHHHHhcCCCCEEEEEc
Confidence 0 11146999996544321111 234 488889999999887543
No 269
>COG1064 AdhP Zn-dependent alcohol dehydrogenases [General function prediction only]
Probab=96.69 E-value=0.015 Score=52.44 Aligned_cols=95 Identities=19% Similarity=0.193 Sum_probs=66.6
Q ss_pred CCCCCcEEEEcCc-ccHHHHHHHHHCCCceEEEEECChHHHHHHHHhcCccccccCCCCcEEEEEc-ccccc-ccCCCee
Q 035593 75 ILPPGPIGILGFG-AGSAARLILDLYPEAVIHGWELDPSVIKVAREFFALEKLEKSYPDRLFVYVG-NALKA-SLKDGFS 151 (269)
Q Consensus 75 l~~~~~VL~iG~G-~G~~~~~l~~~~p~~~v~~vEidp~~~~~a~~~~~~~~~~~~~~~rv~~~~~-D~~~~-~~~~~yD 151 (269)
+.|.++|+++|+| -|.++..+++.. +++|++++++++-.+.|++.-. -.++.. |.... ...+.+|
T Consensus 164 ~~pG~~V~I~G~GGlGh~avQ~Aka~-ga~Via~~~~~~K~e~a~~lGA-----------d~~i~~~~~~~~~~~~~~~d 231 (339)
T COG1064 164 VKPGKWVAVVGAGGLGHMAVQYAKAM-GAEVIAITRSEEKLELAKKLGA-----------DHVINSSDSDALEAVKEIAD 231 (339)
T ss_pred CCCCCEEEEECCcHHHHHHHHHHHHc-CCeEEEEeCChHHHHHHHHhCC-----------cEEEEcCCchhhHHhHhhCc
Confidence 4468999999987 456777777754 5999999999999999998632 123322 22112 2223499
Q ss_pred EEEEcCCCCCCCCCCCCcHHHHHHHHhhccCCcEEEEEecC
Q 035593 152 GILVDLFSKGSLLSELEDPNTWEKLRQCLRKGGRIMVNVGG 192 (269)
Q Consensus 152 ~I~~d~~~~~~~~~~l~~~e~~~~~~~~L~pgG~l~~~~~~ 192 (269)
+|+.-.. ...+....+.|+++|.+++.-..
T Consensus 232 ~ii~tv~-----------~~~~~~~l~~l~~~G~~v~vG~~ 261 (339)
T COG1064 232 AIIDTVG-----------PATLEPSLKALRRGGTLVLVGLP 261 (339)
T ss_pred EEEECCC-----------hhhHHHHHHHHhcCCEEEEECCC
Confidence 9986432 24677788899999999986544
No 270
>KOG2352 consensus Predicted spermine/spermidine synthase [Amino acid transport and metabolism]
Probab=96.67 E-value=0.013 Score=54.69 Aligned_cols=112 Identities=13% Similarity=0.081 Sum_probs=79.2
Q ss_pred CCCCCCC-cEEEEcCcccHHHHHHHHHCCCceEEEEECChHHHHHHHHhcCccccccCCCCcEEEEEcccccc-ccCCCe
Q 035593 73 PPILPPG-PIGILGFGAGSAARLILDLYPEAVIHGWELDPSVIKVAREFFALEKLEKSYPDRLFVYVGNALKA-SLKDGF 150 (269)
Q Consensus 73 ~~l~~~~-~VL~iG~G~G~~~~~l~~~~p~~~v~~vEidp~~~~~a~~~~~~~~~~~~~~~rv~~~~~D~~~~-~~~~~y 150 (269)
+.+.|.. ++|.+|||.-.+...+.+. .--.|+.+|+|+.+++.....-... .+-.++...|+... ..++.|
T Consensus 43 ~~~~p~~~~~l~lGCGNS~l~e~ly~~-G~~dI~~iD~S~V~V~~m~~~~~~~------~~~~~~~~~d~~~l~fedESF 115 (482)
T KOG2352|consen 43 KYLSPSDFKILQLGCGNSELSEHLYKN-GFEDITNIDSSSVVVAAMQVRNAKE------RPEMQMVEMDMDQLVFEDESF 115 (482)
T ss_pred HhhchhhceeEeecCCCCHHHHHHHhc-CCCCceeccccHHHHHHHHhccccC------CcceEEEEecchhccCCCcce
Confidence 3455666 9999999999888777652 2348999999999999887664321 46689999999887 778899
Q ss_pred eEEEE----cCCCCCCCCC--CCCcHHHHHHHHhhccCCcEEEEEec
Q 035593 151 SGILV----DLFSKGSLLS--ELEDPNTWEKLRQCLRKGGRIMVNVG 191 (269)
Q Consensus 151 D~I~~----d~~~~~~~~~--~l~~~e~~~~~~~~L~pgG~l~~~~~ 191 (269)
|+|+- |+........ .......+..+.+.|++||+++.-..
T Consensus 116 diVIdkGtlDal~~de~a~~~~~~v~~~~~eVsrvl~~~gk~~svtl 162 (482)
T KOG2352|consen 116 DIVIDKGTLDALFEDEDALLNTAHVSNMLDEVSRVLAPGGKYISVTL 162 (482)
T ss_pred eEEEecCccccccCCchhhhhhHHhhHHHhhHHHHhccCCEEEEEEe
Confidence 99983 2222211110 11234778899999999998765444
No 271
>KOG1099 consensus SAM-dependent methyltransferase/cell division protein FtsJ [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=96.61 E-value=0.017 Score=48.92 Aligned_cols=135 Identities=16% Similarity=0.146 Sum_probs=89.8
Q ss_pred CCcEEEEcCcccHHHHHHHHHC----C-C-c---eEEEEECChHHHHHHHHhcCccccccCCCCcEEEEEcccccc----
Q 035593 78 PGPIGILGFGAGSAARLILDLY----P-E-A---VIHGWELDPSVIKVAREFFALEKLEKSYPDRLFVYVGNALKA---- 144 (269)
Q Consensus 78 ~~~VL~iG~G~G~~~~~l~~~~----p-~-~---~v~~vEidp~~~~~a~~~~~~~~~~~~~~~rv~~~~~D~~~~---- 144 (269)
-++++|+.+..|+++..|.++. + . . .|++||+.| ..+ -+.|.-+++|....
T Consensus 42 v~rvVDLCAAPGSWSQvlSrkL~~~~~~~~~~~~kIVaVDLQ~-----------MaP-----I~GV~qlq~DIT~~stae 105 (294)
T KOG1099|consen 42 VKRVVDLCAAPGSWSQVLSRKLYKPLPSSGERDKKIVAVDLQP-----------MAP-----IEGVIQLQGDITSASTAE 105 (294)
T ss_pred hhHHhhhhcCCCcHHHHHHHHHhccCCCcchhhccEEEEeccc-----------CCc-----cCceEEeecccCCHhHHH
Confidence 5799999999999999888753 2 1 1 399999966 111 24688888998764
Q ss_pred -----ccCCCeeEEEEcCCCCCCCCCCC---C----cHHHHHHHHhhccCCcEEEEEecCCCccccccccchhHHHHHHH
Q 035593 145 -----SLKDGFSGILVDLFSKGSLLSEL---E----DPNTWEKLRQCLRKGGRIMVNVGGSCVEAEDSRRDGKVVMEATL 212 (269)
Q Consensus 145 -----~~~~~yD~I~~d~~~~~~~~~~l---~----~~e~~~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 212 (269)
...++.|+|++|......-...+ . ....+.-....|+|||.|+.-++.. ++ ...+.
T Consensus 106 ~Ii~hfggekAdlVvcDGAPDvTGlHd~DEy~Q~qLllaAl~i~t~Vlk~Gg~FVaKifRg--------~~----tslLy 173 (294)
T KOG1099|consen 106 AIIEHFGGEKADLVVCDGAPDVTGLHDLDEYVQAQLLLAALNIATCVLKPGGSFVAKIFRG--------RD----TSLLY 173 (294)
T ss_pred HHHHHhCCCCccEEEeCCCCCccccccHHHHHHHHHHHHHHHHHhheecCCCeeehhhhcc--------Cc----hHHHH
Confidence 24679999999964332111111 1 1245556678999999999887653 12 45678
Q ss_pred HHHHHHhcCceEEEEcCCCCc----eEEEEecC
Q 035593 213 KAMHKVFGKKLYVLSLGNRKD----DSLIALTG 241 (269)
Q Consensus 213 ~~l~~~F~~~v~~~~~~~~~n----~v~~~~~~ 241 (269)
..|+..|. .+...+-..+.| ..++|..-
T Consensus 174 sql~~ff~-kv~~~KPrsSR~sSiEaFvvC~~~ 205 (294)
T KOG1099|consen 174 SQLRKFFK-KVTCAKPRSSRNSSIEAFVVCLGY 205 (294)
T ss_pred HHHHHHhh-ceeeecCCccccccceeeeeeccc
Confidence 89999996 677765333333 34666644
No 272
>KOG1331 consensus Predicted methyltransferase [General function prediction only]
Probab=96.60 E-value=0.0011 Score=57.64 Aligned_cols=101 Identities=23% Similarity=0.183 Sum_probs=75.9
Q ss_pred CCcEEEEcCcccHHHHHHHHHCCCceEEEEECChHHHHHHHHhcCccccccCCCCcEEEEEcccccc-ccCCCeeEEEEc
Q 035593 78 PGPIGILGFGAGSAARLILDLYPEAVIHGWELDPSVIKVAREFFALEKLEKSYPDRLFVYVGNALKA-SLKDGFSGILVD 156 (269)
Q Consensus 78 ~~~VL~iG~G~G~~~~~l~~~~p~~~v~~vEidp~~~~~a~~~~~~~~~~~~~~~rv~~~~~D~~~~-~~~~~yD~I~~d 156 (269)
...++|+|||.|-.... .|.+.+.+.|+....+..|++.-+ ..+..+|+... .....||.+++-
T Consensus 46 gsv~~d~gCGngky~~~----~p~~~~ig~D~c~~l~~~ak~~~~-----------~~~~~ad~l~~p~~~~s~d~~lsi 110 (293)
T KOG1331|consen 46 GSVGLDVGCGNGKYLGV----NPLCLIIGCDLCTGLLGGAKRSGG-----------DNVCRADALKLPFREESFDAALSI 110 (293)
T ss_pred cceeeecccCCcccCcC----CCcceeeecchhhhhccccccCCC-----------ceeehhhhhcCCCCCCccccchhh
Confidence 67899999999976543 488899999999988888776421 26777899887 677899999864
Q ss_pred CCCCCCCCCCCCcHHHHHHHHhhccCCcEEEEEecCCC
Q 035593 157 LFSKGSLLSELEDPNTWEKLRQCLRKGGRIMVNVGGSC 194 (269)
Q Consensus 157 ~~~~~~~~~~l~~~e~~~~~~~~L~pgG~l~~~~~~~~ 194 (269)
+.-+ +.....-....++++.+.|+|||...+.+|...
T Consensus 111 avih-hlsT~~RR~~~l~e~~r~lrpgg~~lvyvwa~~ 147 (293)
T KOG1331|consen 111 AVIH-HLSTRERRERALEELLRVLRPGGNALVYVWALE 147 (293)
T ss_pred hhhh-hhhhHHHHHHHHHHHHHHhcCCCceEEEEehhh
Confidence 3322 111122235899999999999999999998764
No 273
>KOG3115 consensus Methyltransferase-like protein [General function prediction only]
Probab=96.56 E-value=0.0061 Score=50.68 Aligned_cols=113 Identities=18% Similarity=0.180 Sum_probs=77.3
Q ss_pred CCcEEEEcCcccHHHHHHHHHCCCceEEEEECChHHHHHHHHhcC-ccccc-cCCCCcEEEEEcccccc----ccCCCee
Q 035593 78 PGPIGILGFGAGSAARLILDLYPEAVIHGWELDPSVIKVAREFFA-LEKLE-KSYPDRLFVYVGNALKA----SLKDGFS 151 (269)
Q Consensus 78 ~~~VL~iG~G~G~~~~~l~~~~p~~~v~~vEidp~~~~~a~~~~~-~~~~~-~~~~~rv~~~~~D~~~~----~~~~~yD 151 (269)
.-.+.|||||-|.+...|.-.+|+.-|.+.||--.|.+..+++.. +.... ...-+++.+...++..| ...++..
T Consensus 61 kvefaDIGCGyGGLlv~Lsp~fPdtLiLGmEIR~KVsdYVk~RI~ALR~~~a~~~~~ni~vlr~namk~lpn~f~kgqLs 140 (249)
T KOG3115|consen 61 KVEFADIGCGYGGLLMKLAPKFPDTLILGMEIRDKVSDYVKERIQALRRTSAEGQYPNISVLRTNAMKFLPNFFEKGQLS 140 (249)
T ss_pred cceEEeeccCccchhhhccccCccceeeeehhhHHHHHHHHHHHHHHhccccccccccceeeeccchhhccchhhhcccc
Confidence 457999999999999999999999999999999999888877652 11000 00134677777777766 2334444
Q ss_pred EEEEcCCCCCC----CCCCCCcHHHHHHHHhhccCCcEEEEEe
Q 035593 152 GILVDLFSKGS----LLSELEDPNTWEKLRQCLRKGGRIMVNV 190 (269)
Q Consensus 152 ~I~~d~~~~~~----~~~~l~~~e~~~~~~~~L~pgG~l~~~~ 190 (269)
-++.-..++.- ....+.+...+.+..=.|++||.+....
T Consensus 141 kmff~fpdpHfk~~khk~rii~~~l~~eyay~l~~gg~~ytit 183 (249)
T KOG3115|consen 141 KMFFLFPDPHFKARKHKWRIITSTLLSEYAYVLREGGILYTIT 183 (249)
T ss_pred cceeecCChhHhhhhccceeechhHHHHHHhhhhcCceEEEEe
Confidence 44443333210 1123456678888999999999887644
No 274
>COG0286 HsdM Type I restriction-modification system methyltransferase subunit [Defense mechanisms]
Probab=96.48 E-value=0.03 Score=53.38 Aligned_cols=124 Identities=16% Similarity=0.161 Sum_probs=82.0
Q ss_pred HHHHhcCCCCCCCCcEEEEcCcccHHHHHHHHHCC----CceEEEEECChHHHHHHHHhcCccccccCCCCcEEEEEccc
Q 035593 66 FDAFATLPPILPPGPIGILGFGAGSAARLILDLYP----EAVIHGWELDPSVIKVAREFFALEKLEKSYPDRLFVYVGNA 141 (269)
Q Consensus 66 ~~~~~~~~~l~~~~~VL~iG~G~G~~~~~l~~~~p----~~~v~~vEidp~~~~~a~~~~~~~~~~~~~~~rv~~~~~D~ 141 (269)
.+.|+.+....+..+|.|-.||+|++.....+... ...+.+.|+++...++|+.++.+.+.. ..+.+..+|-
T Consensus 175 ~~liv~~l~~~~~~~i~DpacGsgg~l~~a~~~~~~~~~~~~~yGqE~~~~t~~l~~mN~~lhgi~----~~~~i~~~dt 250 (489)
T COG0286 175 SELIVELLDPEPRNSIYDPACGSGGMLLQAAKYLKRHQDEIFIYGQEINDTTYRLAKMNLILHGIE----GDANIRHGDT 250 (489)
T ss_pred HHHHHHHcCCCCCCeecCCCCchhHHHHHHHHHHHhhccceeEEEEeCCHHHHHHHHHHHHHhCCC----cccccccccc
Confidence 34444332224567999999999998877666442 378999999999999999998665411 1356666665
Q ss_pred ccc--c----cCCCeeEEEEcCCCC-CC-------------------CCCCCCc-HHHHHHHHhhccCCcEEEEEecCC
Q 035593 142 LKA--S----LKDGFSGILVDLFSK-GS-------------------LLSELED-PNTWEKLRQCLRKGGRIMVNVGGS 193 (269)
Q Consensus 142 ~~~--~----~~~~yD~I~~d~~~~-~~-------------------~~~~l~~-~e~~~~~~~~L~pgG~l~~~~~~~ 193 (269)
..- . ...+||.|+.+.+.. .. .++.-.. ..|++.+...|+|+|...+-+...
T Consensus 251 l~~~~~~~~~~~~~~D~viaNPPf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~af~~h~~~~l~~~g~aaivl~~g 329 (489)
T COG0286 251 LSNPKHDDKDDKGKFDFVIANPPFSGKGWGGDLLESEQDERFFFYGVFPTKNSADLAFLQHILYKLKPGGRAAIVLPDG 329 (489)
T ss_pred ccCCcccccCCccceeEEEeCCCCCccccccccccccccccccccCCCCCCCchHHHHHHHHHHhcCCCceEEEEecCC
Confidence 543 2 346799999875432 10 0111112 579999999999998666655433
No 275
>COG1189 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=96.46 E-value=0.03 Score=47.76 Aligned_cols=102 Identities=14% Similarity=0.102 Sum_probs=70.6
Q ss_pred cCCCCCCCCcEEEEcCcccHHHHHHHHHCCCceEEEEECChHHHHHHHHhcCccccccCCCCcEEEEEc-ccccc---cc
Q 035593 71 TLPPILPPGPIGILGFGAGSAARLILDLYPEAVIHGWELDPSVIKVAREFFALEKLEKSYPDRLFVYVG-NALKA---SL 146 (269)
Q Consensus 71 ~~~~l~~~~~VL~iG~G~G~~~~~l~~~~p~~~v~~vEidp~~~~~a~~~~~~~~~~~~~~~rv~~~~~-D~~~~---~~ 146 (269)
.+....+.+.+||||.-||.++..++++ ...+|++||..-.-+..- +. .++|+.++.. +++.+ ..
T Consensus 73 ~F~l~~k~kv~LDiGsSTGGFTd~lLq~-gAk~VyavDVG~~Ql~~k-----LR-----~d~rV~~~E~tN~r~l~~~~~ 141 (245)
T COG1189 73 EFELDVKGKVVLDIGSSTGGFTDVLLQR-GAKHVYAVDVGYGQLHWK-----LR-----NDPRVIVLERTNVRYLTPEDF 141 (245)
T ss_pred hcCcCCCCCEEEEecCCCccHHHHHHHc-CCcEEEEEEccCCccCHh-----Hh-----cCCcEEEEecCChhhCCHHHc
Confidence 4444446899999999999999999984 466999999865333221 11 3678777664 45544 23
Q ss_pred CCCeeEEEEcCCCCCCCCCCCCcHHHHHHHHhhccCCcEEEEEe
Q 035593 147 KDGFSGILVDLFSKGSLLSELEDPNTWEKLRQCLRKGGRIMVNV 190 (269)
Q Consensus 147 ~~~yD~I~~d~~~~~~~~~~l~~~e~~~~~~~~L~pgG~l~~~~ 190 (269)
.+..|+|++|..-- .....+-.+...|+|+|.++.=+
T Consensus 142 ~~~~d~~v~DvSFI-------SL~~iLp~l~~l~~~~~~~v~Lv 178 (245)
T COG1189 142 TEKPDLIVIDVSFI-------SLKLILPALLLLLKDGGDLVLLV 178 (245)
T ss_pred ccCCCeEEEEeehh-------hHHHHHHHHHHhcCCCceEEEEe
Confidence 34789999986422 13567888888899988776544
No 276
>PRK09880 L-idonate 5-dehydrogenase; Provisional
Probab=96.25 E-value=0.031 Score=50.40 Aligned_cols=95 Identities=17% Similarity=0.166 Sum_probs=60.5
Q ss_pred CCCcEEEEcCc-ccHHHHHHHHHCCCc-eEEEEECChHHHHHHHHhcCccccccCCCCcEEEEEcccccc-ccCCCeeEE
Q 035593 77 PPGPIGILGFG-AGSAARLILDLYPEA-VIHGWELDPSVIKVAREFFALEKLEKSYPDRLFVYVGNALKA-SLKDGFSGI 153 (269)
Q Consensus 77 ~~~~VL~iG~G-~G~~~~~l~~~~p~~-~v~~vEidp~~~~~a~~~~~~~~~~~~~~~rv~~~~~D~~~~-~~~~~yD~I 153 (269)
+..+||++|+| .|.++..+++.. ++ +|++++.+++-.+.+++ ++.... +..-..|..+. ...+.+|+|
T Consensus 169 ~g~~VlV~G~G~vG~~aiqlak~~-G~~~Vi~~~~~~~~~~~a~~-lGa~~v-------i~~~~~~~~~~~~~~g~~D~v 239 (343)
T PRK09880 169 QGKRVFVSGVGPIGCLIVAAVKTL-GAAEIVCADVSPRSLSLARE-MGADKL-------VNPQNDDLDHYKAEKGYFDVS 239 (343)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHc-CCcEEEEEeCCHHHHHHHHH-cCCcEE-------ecCCcccHHHHhccCCCCCEE
Confidence 57899999875 455556666654 55 79999999999999987 442110 00001112222 222358988
Q ss_pred EEcCCCCCCCCCCCCcHHHHHHHHhhccCCcEEEEEe
Q 035593 154 LVDLFSKGSLLSELEDPNTWEKLRQCLRKGGRIMVNV 190 (269)
Q Consensus 154 ~~d~~~~~~~~~~l~~~e~~~~~~~~L~pgG~l~~~~ 190 (269)
+ |+.. ....++.+.+.|+++|.++..-
T Consensus 240 i-d~~G---------~~~~~~~~~~~l~~~G~iv~~G 266 (343)
T PRK09880 240 F-EVSG---------HPSSINTCLEVTRAKGVMVQVG 266 (343)
T ss_pred E-ECCC---------CHHHHHHHHHHhhcCCEEEEEc
Confidence 7 4332 2357788889999999988754
No 277
>KOG1269 consensus SAM-dependent methyltransferases [Lipid transport and metabolism; General function prediction only]
Probab=96.23 E-value=0.0079 Score=54.93 Aligned_cols=108 Identities=17% Similarity=0.210 Sum_probs=78.0
Q ss_pred CCCCCcEEEEcCcccHHHHHHHHHCCCceEEEEECChHHHHHHHHhcCccccccCCCCcEEEEEcccccc-ccCCCeeEE
Q 035593 75 ILPPGPIGILGFGAGSAARLILDLYPEAVIHGWELDPSVIKVAREFFALEKLEKSYPDRLFVYVGNALKA-SLKDGFSGI 153 (269)
Q Consensus 75 l~~~~~VL~iG~G~G~~~~~l~~~~p~~~v~~vEidp~~~~~a~~~~~~~~~~~~~~~rv~~~~~D~~~~-~~~~~yD~I 153 (269)
+.|..+++++|||-|...+++.. +..+.+++++.++.-+..+........ -+.+..+..+|...- .++..||.+
T Consensus 108 ~~~~~~~~~~~~g~~~~~~~i~~-f~~~~~~Gl~~n~~e~~~~~~~~~~~~----l~~k~~~~~~~~~~~~fedn~fd~v 182 (364)
T KOG1269|consen 108 CFPGSKVLDVGTGVGGPSRYIAV-FKKAGVVGLDNNAYEAFRANELAKKAY----LDNKCNFVVADFGKMPFEDNTFDGV 182 (364)
T ss_pred CcccccccccCcCcCchhHHHHH-hccCCccCCCcCHHHHHHHHHHHHHHH----hhhhcceehhhhhcCCCCccccCcE
Confidence 34567899999999999999987 578899999999988877765542111 022344477777766 677889988
Q ss_pred EE-cCCCCCCCCCCCCcHHHHHHHHhhccCCcEEEEEecC
Q 035593 154 LV-DLFSKGSLLSELEDPNTWEKLRQCLRKGGRIMVNVGG 192 (269)
Q Consensus 154 ~~-d~~~~~~~~~~l~~~e~~~~~~~~L~pgG~l~~~~~~ 192 (269)
-+ |..-+ .+ .....++++++.++|||++++.-+.
T Consensus 183 ~~ld~~~~--~~---~~~~~y~Ei~rv~kpGG~~i~~e~i 217 (364)
T KOG1269|consen 183 RFLEVVCH--AP---DLEKVYAEIYRVLKPGGLFIVKEWI 217 (364)
T ss_pred EEEeeccc--CC---cHHHHHHHHhcccCCCceEEeHHHH
Confidence 63 32211 11 2468999999999999999986543
No 278
>PF06460 NSP13: Coronavirus NSP13; InterPro: IPR009461 This domain covers the NSP13 region of the coronavirus polyprotein. This protein has the predicted function of an mRNA cap-1 methyltransferase []. The human coronavirus 229E (HCoV-229E) replicase gene-encoded nonstructural protein 13 (nsp13) contains an N-terminal zinc-binding domain and a C-terminal superfamily 1 helicase domain []. All natural ribonucleotides and nucleotides are substrates of nsp13, with ATP, dATP, and GTP being hydrolyzed most efficiently. Using the NTPase active site, HCoV-229E nsp13 also mediates RNA 5'-triphosphatase activity, which may be involved in the capping of viral RNAs.; GO: 0003968 RNA-directed RNA polymerase activity, 0004197 cysteine-type endopeptidase activity, 0008168 methyltransferase activity, 0008233 peptidase activity, 0016817 hydrolase activity, acting on acid anhydrides, 0016896 exoribonuclease activity, producing 5'-phosphomonoesters; PDB: 2XYV_A 2XYR_A 3R24_A 2XYQ_A.
Probab=96.20 E-value=0.053 Score=46.79 Aligned_cols=113 Identities=16% Similarity=0.247 Sum_probs=62.2
Q ss_pred CCcEEEEcCccc--H--HHHHHHHHCC-CceEEEEECChHHHHHHHHhcCccccccCCCCcEEEEEccccccccCCCeeE
Q 035593 78 PGPIGILGFGAG--S--AARLILDLYP-EAVIHGWELDPSVIKVAREFFALEKLEKSYPDRLFVYVGNALKASLKDGFSG 152 (269)
Q Consensus 78 ~~~VL~iG~G~G--~--~~~~l~~~~p-~~~v~~vEidp~~~~~a~~~~~~~~~~~~~~~rv~~~~~D~~~~~~~~~yD~ 152 (269)
..+||-+|+|+- . -+..|++.+| ++.++-.|+++ +.. +--..+.+|.+.+..+.++|+
T Consensus 62 nMrVlHlGAgSdkGvaPGt~VLrqwlP~~ailvDnDi~d--------~vS---------Da~~~~~~Dc~t~~~~~k~Dl 124 (299)
T PF06460_consen 62 NMRVLHLGAGSDKGVAPGTAVLRQWLPEDAILVDNDIRD--------YVS---------DADQSIVGDCRTYMPPDKFDL 124 (299)
T ss_dssp T-EEEEES---TTSB-HHHHHHHHHS-TT-EEEEEESS----------B----------SSSEEEES-GGGEEESS-EEE
T ss_pred CcEEEEecccccCCcCCchHHHHHhCCCCcEEEecchhh--------hcc---------ccCCceeccccccCCCCcccE
Confidence 679999999842 2 2355666677 67888888854 221 223667799999988899999
Q ss_pred EEEcCCCCCCC---CCCCCcHHHH----HHHHhhccCCcEEEEEecCCCccccccccchhHHHHHHHHHHHHHhc
Q 035593 153 ILVDLFSKGSL---LSELEDPNTW----EKLRQCLRKGGRIMVNVGGSCVEAEDSRRDGKVVMEATLKAMHKVFG 220 (269)
Q Consensus 153 I~~d~~~~~~~---~~~l~~~e~~----~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~F~ 220 (269)
||+|.+++..- ......+.|| .-+++.|+-||.+++-+..... ..-+-.|.+.|.
T Consensus 125 IiSDmYd~~~k~~~~~n~~~~~fF~yl~~~i~~kLaLGGSvaiKiTE~Sw-------------~~~Lyel~~~F~ 186 (299)
T PF06460_consen 125 IISDMYDGRTKNCDGENNSKEGFFTYLCGFIKEKLALGGSVAIKITEHSW-------------NAQLYELMGYFS 186 (299)
T ss_dssp EEE----TTS-SS-S------THHHHHHHHHHHHEEEEEEEEEEE-SSS---------------HHHHHHHTTEE
T ss_pred EEEecccccccccccccCCccccHHHHHHHHHhhhhcCceEEEEeecccc-------------cHHHHHHHhhcc
Confidence 99999965321 1111123344 4557999999999998854321 234556777785
No 279
>PF04445 SAM_MT: Putative SAM-dependent methyltransferase; InterPro: IPR007536 This family of proteins is functionally uncharacterised.; PDB: 2PGX_A 2OYR_A 2R6Z_A 2PKW_A.
Probab=96.16 E-value=0.011 Score=50.59 Aligned_cols=80 Identities=18% Similarity=0.208 Sum_probs=48.1
Q ss_pred CcEEEEcCcccHHHHHHHHHCCCceEEEEECChHHHHHHHHhcC---c-cccccCCCCcEEEEEcccccc--ccCCCeeE
Q 035593 79 GPIGILGFGAGSAARLILDLYPEAVIHGWELDPSVIKVAREFFA---L-EKLEKSYPDRLFVYVGNALKA--SLKDGFSG 152 (269)
Q Consensus 79 ~~VL~iG~G~G~~~~~l~~~~p~~~v~~vEidp~~~~~a~~~~~---~-~~~~~~~~~rv~~~~~D~~~~--~~~~~yD~ 152 (269)
.+|||.=+|-|.-+..++.. +++|+++|-||-+..+.+.-+. . ..+......|++++++|..++ .....||+
T Consensus 77 ~~VLDaTaGLG~Da~vlA~~--G~~V~~lErspvia~Ll~dGL~r~~~~~~~~~~~~~ri~l~~~d~~~~L~~~~~s~DV 154 (234)
T PF04445_consen 77 PSVLDATAGLGRDAFVLASL--GCKVTGLERSPVIAALLKDGLKRAQQDPELLAEAMRRIQLIHGDALEYLRQPDNSFDV 154 (234)
T ss_dssp --EEETT-TTSHHHHHHHHH--T--EEEEE--HHHHHHHHHHHHHHHHSTTTHHHHHHHEEEEES-CCCHCCCHSS--SE
T ss_pred CEEEECCCcchHHHHHHHcc--CCeEEEEECCHHHHHHHHHHHHHHHhCcHhHHHHHhCCEEEcCCHHHHHhhcCCCCCE
Confidence 48999999999999888763 7899999999999877664321 1 110000124899999999998 45789999
Q ss_pred EEEcCCCC
Q 035593 153 ILVDLFSK 160 (269)
Q Consensus 153 I~~d~~~~ 160 (269)
|.+|..-+
T Consensus 155 VY~DPMFp 162 (234)
T PF04445_consen 155 VYFDPMFP 162 (234)
T ss_dssp EEE--S--
T ss_pred EEECCCCC
Confidence 99997544
No 280
>PF11968 DUF3321: Putative methyltransferase (DUF3321); InterPro: IPR021867 This family is conserved in fungi and is annotated as being a nucleolar protein.
Probab=96.12 E-value=0.029 Score=47.24 Aligned_cols=93 Identities=10% Similarity=0.041 Sum_probs=64.2
Q ss_pred CCcEEEEcCcccHHHHHHHHHCCCceEEEEECChHHHHHHHHhcCccccccCCCCcEEEEEcccccc----ccCCCeeEE
Q 035593 78 PGPIGILGFGAGSAARLILDLYPEAVIHGWELDPSVIKVAREFFALEKLEKSYPDRLFVYVGNALKA----SLKDGFSGI 153 (269)
Q Consensus 78 ~~~VL~iG~G~G~~~~~l~~~~p~~~v~~vEidp~~~~~a~~~~~~~~~~~~~~~rv~~~~~D~~~~----~~~~~yD~I 153 (269)
+.++|||||=+...+.. ..+-..|+.+|+++. .-.+..+|+.+. ...++||+|
T Consensus 52 ~lrlLEVGals~~N~~s---~~~~fdvt~IDLns~--------------------~~~I~qqDFm~rplp~~~~e~FdvI 108 (219)
T PF11968_consen 52 KLRLLEVGALSTDNACS---TSGWFDVTRIDLNSQ--------------------HPGILQQDFMERPLPKNESEKFDVI 108 (219)
T ss_pred cceEEeecccCCCCccc---ccCceeeEEeecCCC--------------------CCCceeeccccCCCCCCcccceeEE
Confidence 57999999854443332 234567999999871 125667788776 356799999
Q ss_pred EEcCCCCCCCCCCCCcHHHHHHHHhhccCCcE-----EEEEecCCC
Q 035593 154 LVDLFSKGSLLSELEDPNTWEKLRQCLRKGGR-----IMVNVGGSC 194 (269)
Q Consensus 154 ~~d~~~~~~~~~~l~~~e~~~~~~~~L~pgG~-----l~~~~~~~~ 194 (269)
.+.+.-. .+|.....-+.++.+.+.|+|+|. |.+-+..++
T Consensus 109 s~SLVLN-fVP~p~~RG~Ml~r~~~fL~~~g~~~~~~LFlVlP~~C 153 (219)
T PF11968_consen 109 SLSLVLN-FVPDPKQRGEMLRRAHKFLKPPGLSLFPSLFLVLPLPC 153 (219)
T ss_pred EEEEEEe-eCCCHHHHHHHHHHHHHHhCCCCccCcceEEEEeCchH
Confidence 8765322 233333345999999999999999 877776555
No 281
>COG5459 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=96.12 E-value=0.035 Score=49.93 Aligned_cols=110 Identities=22% Similarity=0.225 Sum_probs=69.8
Q ss_pred CCcEEEEcCcccHHHHHHHHHCCCc-eEEEEECChHHHHHHHHhc---CccccccCCCCcEEEEEccccccccCCCeeEE
Q 035593 78 PGPIGILGFGAGSAARLILDLYPEA-VIHGWELDPSVIKVAREFF---ALEKLEKSYPDRLFVYVGNALKASLKDGFSGI 153 (269)
Q Consensus 78 ~~~VL~iG~G~G~~~~~l~~~~p~~-~v~~vEidp~~~~~a~~~~---~~~~~~~~~~~rv~~~~~D~~~~~~~~~yD~I 153 (269)
|++|||+|.|.|..+.++-..+|.. .++.+|.+|.+-++.-.-. .... .+-|..=+..|-..+.....|++|
T Consensus 114 pqsiLDvG~GPgtgl~A~n~i~Pdl~sa~ile~sp~lrkV~~tl~~nv~t~~----td~r~s~vt~dRl~lp~ad~ytl~ 189 (484)
T COG5459 114 PQSILDVGAGPGTGLWALNDIWPDLKSAVILEASPALRKVGDTLAENVSTEK----TDWRASDVTEDRLSLPAADLYTLA 189 (484)
T ss_pred cchhhccCCCCchhhhhhcccCCCchhhhhhccCHHHHHHHHHHHhhccccc----CCCCCCccchhccCCCccceeehh
Confidence 7789999999999998888888864 8999999998876654322 1110 111222223333333455678887
Q ss_pred EEc-CCCCCCCCCCCCcHHHHHHHHhhccCCcEEEEEecCC
Q 035593 154 LVD-LFSKGSLLSELEDPNTWEKLRQCLRKGGRIMVNVGGS 193 (269)
Q Consensus 154 ~~d-~~~~~~~~~~l~~~e~~~~~~~~L~pgG~l~~~~~~~ 193 (269)
++- ---+... +......++.+.+.++|||.|++---+.
T Consensus 190 i~~~eLl~d~~--ek~i~~~ie~lw~l~~~gg~lVivErGt 228 (484)
T COG5459 190 IVLDELLPDGN--EKPIQVNIERLWNLLAPGGHLVIVERGT 228 (484)
T ss_pred hhhhhhccccC--cchHHHHHHHHHHhccCCCeEEEEeCCC
Confidence 742 1111111 1112358999999999999998866443
No 282
>PF11599 AviRa: RRNA methyltransferase AviRa; InterPro: IPR024268 This family of proteins includes the methyltransferase AviRa from Streptomyces viridochromogenes. This protein mediates the resistance to the antibiotic avilamycin. AviRa methylates a specific guanine base within the peptidyl-transferase loop of the 23S ribosomal RNA [].; PDB: 1O9H_A 1O9G_A.
Probab=96.00 E-value=0.096 Score=44.11 Aligned_cols=112 Identities=13% Similarity=0.072 Sum_probs=67.7
Q ss_pred CCCcEEEEcCcccHHHHHHHHHCCC--ceEEEEECChHHHHHHHHhcCccc---cc------------------------
Q 035593 77 PPGPIGILGFGAGSAARLILDLYPE--AVIHGWELDPSVIKVAREFFALEK---LE------------------------ 127 (269)
Q Consensus 77 ~~~~VL~iG~G~G~~~~~l~~~~p~--~~v~~vEidp~~~~~a~~~~~~~~---~~------------------------ 127 (269)
.|-.+-|-.||+|.+...+.-.+++ ..|.+-|||++++++|++++++-. +.
T Consensus 51 ~p~tLyDPCCG~gyLLTVlGLLh~~~l~~v~aSDId~~aL~lA~kNL~LLt~eGL~~R~~eL~~~~e~~~kps~~eAl~s 130 (246)
T PF11599_consen 51 GPYTLYDPCCGSGYLLTVLGLLHRRRLRRVYASDIDEDALELARKNLSLLTPEGLEARREELRELYEQYGKPSHAEALES 130 (246)
T ss_dssp S-EEEEETT-TTSHHHHHHHHHTGGGEEEEEEEES-HHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHH--HHHHHHHHH
T ss_pred CCeeeeccCCCccHHHHHHHHhhhHHHHhHhcccCCHHHHHHHHHhhhhccHhHHHHHHHHHHHHHHHcCCchHHHHHHH
Confidence 4778999999999998766544443 489999999999999998875311 00
Q ss_pred ----------cCCCCcEEEEEcccccc------ccCCCeeEEEEcCCCCCCCCCCC-----CcHHHHHHHHhhccCCcEE
Q 035593 128 ----------KSYPDRLFVYVGNALKA------SLKDGFSGILVDLFSKGSLLSEL-----EDPNTWEKLRQCLRKGGRI 186 (269)
Q Consensus 128 ----------~~~~~rv~~~~~D~~~~------~~~~~yD~I~~d~~~~~~~~~~l-----~~~e~~~~~~~~L~pgG~l 186 (269)
........+...|.++. ......|+|+.|++-.......- -...++..+...|.+++++
T Consensus 131 A~RL~~~l~~~g~~~p~~~~~aDvf~~~~~~~~~~~~~~diViTDlPYG~~t~W~g~~~~~p~~~ml~~l~~vLp~~sVV 210 (246)
T PF11599_consen 131 ADRLRERLAAEGGDEPHAIFRADVFDPSPLAVLDAGFTPDIVITDLPYGEMTSWQGEGSGGPVAQMLNSLAPVLPERSVV 210 (246)
T ss_dssp HHHHHHHHHHTTSS--EEEEE--TT-HHHHHHHHTT---SEEEEE--CCCSSSTTS---HHHHHHHHHHHHCCS-TT-EE
T ss_pred HHHHHHHHHhcCCCCchhheeecccCCchhhhhccCCCCCEEEecCCCcccccccCCCCCCcHHHHHHHHHhhCCCCcEE
Confidence 00123467888888874 23445699999986553222111 1258999999999777787
Q ss_pred EE
Q 035593 187 MV 188 (269)
Q Consensus 187 ~~ 188 (269)
++
T Consensus 211 ~v 212 (246)
T PF11599_consen 211 AV 212 (246)
T ss_dssp EE
T ss_pred EE
Confidence 77
No 283
>COG0686 Ald Alanine dehydrogenase [Amino acid transport and metabolism]
Probab=95.94 E-value=0.051 Score=48.22 Aligned_cols=98 Identities=15% Similarity=0.184 Sum_probs=71.1
Q ss_pred CCCcEEEEcCc-ccHHHHHHHHHCCCceEEEEECChHHHHHHHHhcCccccccCCCCcEEEEEcccccc-ccCCCeeEEE
Q 035593 77 PPGPIGILGFG-AGSAARLILDLYPEAVIHGWELDPSVIKVAREFFALEKLEKSYPDRLFVYVGNALKA-SLKDGFSGIL 154 (269)
Q Consensus 77 ~~~~VL~iG~G-~G~~~~~l~~~~p~~~v~~vEidp~~~~~a~~~~~~~~~~~~~~~rv~~~~~D~~~~-~~~~~yD~I~ 154 (269)
++.+|..||+| .|..+..++- .-++.|+.+|+|..-++.....|+ .|++.+......+ ..-.++|+||
T Consensus 167 ~~~kv~iiGGGvvgtnaAkiA~-glgA~Vtild~n~~rl~~ldd~f~---------~rv~~~~st~~~iee~v~~aDlvI 236 (371)
T COG0686 167 LPAKVVVLGGGVVGTNAAKIAI-GLGADVTILDLNIDRLRQLDDLFG---------GRVHTLYSTPSNIEEAVKKADLVI 236 (371)
T ss_pred CCccEEEECCccccchHHHHHh-ccCCeeEEEecCHHHHhhhhHhhC---------ceeEEEEcCHHHHHHHhhhccEEE
Confidence 37789999988 5666666654 348899999999998888777764 4788888887777 5567899998
Q ss_pred EcCCCCCCCCCCCCcHHHHHHHHhhccCCcEEEE
Q 035593 155 VDLFSKGSLLSELEDPNTWEKLRQCLRKGGRIMV 188 (269)
Q Consensus 155 ~d~~~~~~~~~~l~~~e~~~~~~~~L~pgG~l~~ 188 (269)
.-.--+..-.|.|. .+++.+.++||++++=
T Consensus 237 gaVLIpgakaPkLv----t~e~vk~MkpGsVivD 266 (371)
T COG0686 237 GAVLIPGAKAPKLV----TREMVKQMKPGSVIVD 266 (371)
T ss_pred EEEEecCCCCceeh----hHHHHHhcCCCcEEEE
Confidence 65433333345554 4566677899887763
No 284
>KOG3201 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.88 E-value=0.0085 Score=48.10 Aligned_cols=110 Identities=16% Similarity=0.075 Sum_probs=67.8
Q ss_pred CCCCCcEEEEcCcccHHH-HHHHHHCCCceEEEEECChHHHHHHHHhcCccccccCCCCcEEEEEcccccc---ccCCCe
Q 035593 75 ILPPGPIGILGFGAGSAA-RLILDLYPEAVIHGWELDPSVIKVAREFFALEKLEKSYPDRLFVYVGNALKA---SLKDGF 150 (269)
Q Consensus 75 l~~~~~VL~iG~G~G~~~-~~l~~~~p~~~v~~vEidp~~~~~a~~~~~~~~~~~~~~~rv~~~~~D~~~~---~~~~~y 150 (269)
....++||++|+|--+++ ..++...|...|..-|=+++.++-.++-...+.. ....++.+..-+.... ....+|
T Consensus 27 ~~rg~~ilelgggft~laglmia~~a~~~~v~ltdgne~svrnv~ki~~~n~~--s~~tsc~vlrw~~~~aqsq~eq~tF 104 (201)
T KOG3201|consen 27 KIRGRRILELGGGFTGLAGLMIACKAPDSSVWLTDGNEESVRNVEKIRNSNMA--SSLTSCCVLRWLIWGAQSQQEQHTF 104 (201)
T ss_pred HHhHHHHHHhcCchhhhhhhheeeecCCceEEEecCCHHHHHHHHHHHhcccc--cccceehhhHHHHhhhHHHHhhCcc
Confidence 334689999999955444 4555555788999999999999887775433210 0112333332222221 345689
Q ss_pred eEEEEcCCCCCCCCCCCCcHHHHHHHHhhccCCcEEEEEe
Q 035593 151 SGILVDLFSKGSLLSELEDPNTWEKLRQCLRKGGRIMVNV 190 (269)
Q Consensus 151 D~I~~d~~~~~~~~~~l~~~e~~~~~~~~L~pgG~l~~~~ 190 (269)
|.|+..- -.-..-+..+..+.++..|+|.|..++..
T Consensus 105 DiIlaAD----ClFfdE~h~sLvdtIk~lL~p~g~Al~fs 140 (201)
T KOG3201|consen 105 DIILAAD----CLFFDEHHESLVDTIKSLLRPSGRALLFS 140 (201)
T ss_pred cEEEecc----chhHHHHHHHHHHHHHHHhCcccceeEec
Confidence 9998521 01001123578889999999999966644
No 285
>PHA01634 hypothetical protein
Probab=95.86 E-value=0.042 Score=42.39 Aligned_cols=86 Identities=17% Similarity=0.146 Sum_probs=59.1
Q ss_pred ccchHHHHHhc-CCCCC-CCCcEEEEcCcccHHHHHHHHHCCCceEEEEECChHHHHHHHHhcCccccccCCCCcEEEEE
Q 035593 61 LTNTYFDAFAT-LPPIL-PPGPIGILGFGAGSAARLILDLYPEAVIHGWELDPSVIKVAREFFALEKLEKSYPDRLFVYV 138 (269)
Q Consensus 61 l~~~y~~~~~~-~~~l~-~~~~VL~iG~G~G~~~~~l~~~~p~~~v~~vEidp~~~~~a~~~~~~~~~~~~~~~rv~~~~ 138 (269)
+...|++.... ...+. ..++|++||++.|..+.+.+-+ ....|.++|.+|...+..++..... .++
T Consensus 10 ~~c~ywrey~~~Y~~idvk~KtV~dIGA~iGdSaiYF~l~-GAK~Vva~E~~~kl~k~~een~k~n-----------nI~ 77 (156)
T PHA01634 10 LECDYWREYPHAYGMLNVYQRTIQIVGADCGSSALYFLLR-GASFVVQYEKEEKLRKKWEEVCAYF-----------NIC 77 (156)
T ss_pred ccchHHHHHHHHhhheeecCCEEEEecCCccchhhHHhhc-CccEEEEeccCHHHHHHHHHHhhhh-----------eee
Confidence 45667766532 21222 5899999999999999998863 3559999999999999998865422 111
Q ss_pred cccc---cc-ccCCCeeEEEEcCC
Q 035593 139 GNAL---KA-SLKDGFSGILVDLF 158 (269)
Q Consensus 139 ~D~~---~~-~~~~~yD~I~~d~~ 158 (269)
.-+. ++ ..-+.||+..+|.-
T Consensus 78 DK~v~~~eW~~~Y~~~Di~~iDCe 101 (156)
T PHA01634 78 DKAVMKGEWNGEYEDVDIFVMDCE 101 (156)
T ss_pred eceeecccccccCCCcceEEEEcc
Confidence 1121 23 34568999999874
No 286
>TIGR00518 alaDH alanine dehydrogenase. The family of known L-alanine dehydrogenases includes representatives from the Proteobacteria, Firmicutes, and Cyanobacteria, all with about 50 % identity or better. An outlier to this group in both sequence and gap pattern is the homolog from Helicobacter pylori, an epsilon division Proteobacteria, which must be considered a putative alanine dehydrogenase. Related proteins include saccharopine dehydrogenase and the N-terminal half of the NAD(P) transhydrogenase alpha subunit. All of these related proteins bind NAD and/or NADP.
Probab=95.67 E-value=0.09 Score=48.32 Aligned_cols=97 Identities=16% Similarity=0.223 Sum_probs=55.9
Q ss_pred CCCcEEEEcCc-ccHHHHHHHHHCCCceEEEEECChHHHHHHHHhcCccccccCCCCcEEEEEcccccc-ccCCCeeEEE
Q 035593 77 PPGPIGILGFG-AGSAARLILDLYPEAVIHGWELDPSVIKVAREFFALEKLEKSYPDRLFVYVGNALKA-SLKDGFSGIL 154 (269)
Q Consensus 77 ~~~~VL~iG~G-~G~~~~~l~~~~p~~~v~~vEidp~~~~~a~~~~~~~~~~~~~~~rv~~~~~D~~~~-~~~~~yD~I~ 154 (269)
++.+|+++|+| .|..+...++.. +++|+++|.+++-.+.+...++. .+.....+...+ ..-..+|+|+
T Consensus 166 ~~~~VlViGaG~vG~~aa~~a~~l-Ga~V~v~d~~~~~~~~l~~~~g~---------~v~~~~~~~~~l~~~l~~aDvVI 235 (370)
T TIGR00518 166 EPGDVTIIGGGVVGTNAAKMANGL-GATVTILDINIDRLRQLDAEFGG---------RIHTRYSNAYEIEDAVKRADLLI 235 (370)
T ss_pred CCceEEEEcCCHHHHHHHHHHHHC-CCeEEEEECCHHHHHHHHHhcCc---------eeEeccCCHHHHHHHHccCCEEE
Confidence 46789999987 455555555543 67899999999877766655531 122211222222 2234789999
Q ss_pred EcCCCCCCCCCCCCcHHHHHHHHhhccCCcEEE
Q 035593 155 VDLFSKGSLLSELEDPNTWEKLRQCLRKGGRIM 187 (269)
Q Consensus 155 ~d~~~~~~~~~~l~~~e~~~~~~~~L~pgG~l~ 187 (269)
....-+....+.+.+.+.+ +.++++++++
T Consensus 236 ~a~~~~g~~~p~lit~~~l----~~mk~g~vIv 264 (370)
T TIGR00518 236 GAVLIPGAKAPKLVSNSLV----AQMKPGAVIV 264 (370)
T ss_pred EccccCCCCCCcCcCHHHH----hcCCCCCEEE
Confidence 7542211122344455555 4467876654
No 287
>cd08283 FDH_like_1 Glutathione-dependent formaldehyde dehydrogenase related proteins, child 1. Members identified as glutathione-dependent formaldehyde dehydrogenase(FDH), a member of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like many zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these FDHs form dimers, with 4 zinc ions per dimer. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. T
Probab=95.66 E-value=0.11 Score=47.64 Aligned_cols=107 Identities=17% Similarity=0.207 Sum_probs=67.7
Q ss_pred CCCCCcEEEEcCcc-cHHHHHHHHHCCCceEEEEECChHHHHHHHHhcCccccccCCCCcEEEEEcc-ccc----cccCC
Q 035593 75 ILPPGPIGILGFGA-GSAARLILDLYPEAVIHGWELDPSVIKVAREFFALEKLEKSYPDRLFVYVGN-ALK----ASLKD 148 (269)
Q Consensus 75 l~~~~~VL~iG~G~-G~~~~~l~~~~p~~~v~~vEidp~~~~~a~~~~~~~~~~~~~~~rv~~~~~D-~~~----~~~~~ 148 (269)
+.+..+||++|+|+ |..+..+++.....+|++++.+++..+.++++.+.. -+.....+ ..+ +...+
T Consensus 182 ~~~g~~VlV~g~G~vG~~~~~la~~~g~~~vi~~~~~~~~~~~~~~~~~~~--------vi~~~~~~~~~~~l~~~~~~~ 253 (386)
T cd08283 182 VKPGDTVAVWGCGPVGLFAARSAKLLGAERVIAIDRVPERLEMARSHLGAE--------TINFEEVDDVVEALRELTGGR 253 (386)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHHcCCcE--------EEcCCcchHHHHHHHHHcCCC
Confidence 34678999999987 888888888764346999999999999999874321 11111111 111 12334
Q ss_pred CeeEEEEcCCCCCCC------------CCCCCcHHHHHHHHhhccCCcEEEEEe
Q 035593 149 GFSGILVDLFSKGSL------------LSELEDPNTWEKLRQCLRKGGRIMVNV 190 (269)
Q Consensus 149 ~yD~I~~d~~~~~~~------------~~~l~~~e~~~~~~~~L~pgG~l~~~~ 190 (269)
.+|+|+- ....... .+.-.....++.+.+.|+++|.++...
T Consensus 254 ~~D~vld-~vg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G~iv~~g 306 (386)
T cd08283 254 GPDVCID-AVGMEAHGSPLHKAEQALLKLETDRPDALREAIQAVRKGGTVSIIG 306 (386)
T ss_pred CCCEEEE-CCCCcccccccccccccccccccCchHHHHHHHHHhccCCEEEEEc
Confidence 6998874 3221100 011123467888999999999987653
No 288
>TIGR01202 bchC 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase.
Probab=95.54 E-value=0.1 Score=46.37 Aligned_cols=87 Identities=23% Similarity=0.302 Sum_probs=56.9
Q ss_pred CCCcEEEEcCc-ccHHHHHHHHHCCCceEEEEECChHHHHHHHHhcCccccccCCCCcEEEEEccccccccCCCeeEEEE
Q 035593 77 PPGPIGILGFG-AGSAARLILDLYPEAVIHGWELDPSVIKVAREFFALEKLEKSYPDRLFVYVGNALKASLKDGFSGILV 155 (269)
Q Consensus 77 ~~~~VL~iG~G-~G~~~~~l~~~~p~~~v~~vEidp~~~~~a~~~~~~~~~~~~~~~rv~~~~~D~~~~~~~~~yD~I~~ 155 (269)
+..+||++|+| -|.++..+++......|.+++.+++-++.|+...-.+ +. + .....+|+|+
T Consensus 144 ~~~~vlV~G~G~vG~~a~q~ak~~G~~~v~~~~~~~~rl~~a~~~~~i~-------~~------~----~~~~g~Dvvi- 205 (308)
T TIGR01202 144 KVLPDLIVGHGTLGRLLARLTKAAGGSPPAVWETNPRRRDGATGYEVLD-------PE------K----DPRRDYRAIY- 205 (308)
T ss_pred CCCcEEEECCCHHHHHHHHHHHHcCCceEEEeCCCHHHHHhhhhccccC-------hh------h----ccCCCCCEEE-
Confidence 46789999976 5666677777654335778899988777765431111 00 0 0234689887
Q ss_pred cCCCCCCCCCCCCcHHHHHHHHhhccCCcEEEEEe
Q 035593 156 DLFSKGSLLSELEDPNTWEKLRQCLRKGGRIMVNV 190 (269)
Q Consensus 156 d~~~~~~~~~~l~~~e~~~~~~~~L~pgG~l~~~~ 190 (269)
|+.. ....++.+.+.|+++|.+++--
T Consensus 206 d~~G---------~~~~~~~~~~~l~~~G~iv~~G 231 (308)
T TIGR01202 206 DASG---------DPSLIDTLVRRLAKGGEIVLAG 231 (308)
T ss_pred ECCC---------CHHHHHHHHHhhhcCcEEEEEe
Confidence 4432 2357788889999999998643
No 289
>KOG3987 consensus Uncharacterized conserved protein DREV/CGI-81 [Function unknown]
Probab=95.53 E-value=0.0022 Score=53.43 Aligned_cols=94 Identities=17% Similarity=0.148 Sum_probs=63.5
Q ss_pred CCCcEEEEcCcccHHHHHHHHHCCCceEEEEECChHHHHHHHHhcCccccccCCCCcEEEEEcccccc-ccCCCeeEEEE
Q 035593 77 PPGPIGILGFGAGSAARLILDLYPEAVIHGWELDPSVIKVAREFFALEKLEKSYPDRLFVYVGNALKA-SLKDGFSGILV 155 (269)
Q Consensus 77 ~~~~VL~iG~G~G~~~~~l~~~~p~~~v~~vEidp~~~~~a~~~~~~~~~~~~~~~rv~~~~~D~~~~-~~~~~yD~I~~ 155 (269)
.+.++||||+|.|-++..++-.+ .+|.+-|++..|....++. + .+++ -..++ ..+-+||+|.+
T Consensus 112 ~~~~lLDlGAGdGeit~~m~p~f--eevyATElS~tMr~rL~kk-~-----------ynVl--~~~ew~~t~~k~dli~c 175 (288)
T KOG3987|consen 112 EPVTLLDLGAGDGEITLRMAPTF--EEVYATELSWTMRDRLKKK-N-----------YNVL--TEIEWLQTDVKLDLILC 175 (288)
T ss_pred CCeeEEeccCCCcchhhhhcchH--HHHHHHHhhHHHHHHHhhc-C-----------Ccee--eehhhhhcCceeehHHH
Confidence 37899999999999998876543 3689999999998776543 1 1221 12233 44568999964
Q ss_pred cCCCCCCCCCCCCcHHHHHHHHhhccC-CcEEEEEe
Q 035593 156 DLFSKGSLLSELEDPNTWEKLRQCLRK-GGRIMVNV 190 (269)
Q Consensus 156 d~~~~~~~~~~l~~~e~~~~~~~~L~p-gG~l~~~~ 190 (269)
- + -...+...-..++.++.+|+| +|.+++..
T Consensus 176 l--N--lLDRc~~p~kLL~Di~~vl~psngrvivaL 207 (288)
T KOG3987|consen 176 L--N--LLDRCFDPFKLLEDIHLVLAPSNGRVIVAL 207 (288)
T ss_pred H--H--HHHhhcChHHHHHHHHHHhccCCCcEEEEE
Confidence 1 0 011122345899999999999 88777654
No 290
>KOG1098 consensus Putative SAM-dependent rRNA methyltransferase SPB1 [RNA processing and modification; General function prediction only]
Probab=95.34 E-value=0.057 Score=51.86 Aligned_cols=124 Identities=15% Similarity=0.042 Sum_probs=84.4
Q ss_pred CCCCCCcEEEEcCcccHHHHHHHHHCC-CceEEEEECChHHHHHHHHhcCccccccCCCCcEEEEEccccc----c----
Q 035593 74 PILPPGPIGILGFGAGSAARLILDLYP-EAVIHGWELDPSVIKVAREFFALEKLEKSYPDRLFVYVGNALK----A---- 144 (269)
Q Consensus 74 ~l~~~~~VL~iG~G~G~~~~~l~~~~p-~~~v~~vEidp~~~~~a~~~~~~~~~~~~~~~rv~~~~~D~~~----~---- 144 (269)
.+.+...||||||..|++.....+..| +.-|++|||-|- .+ -+++..+++|... +
T Consensus 41 fl~~a~~vlDLcaAPG~W~QVA~q~~pv~slivGvDl~pi-----------kp-----~~~c~t~v~dIttd~cr~~l~k 104 (780)
T KOG1098|consen 41 FLEKAHVVLDLCAAPGGWLQVASQSMPVGSLIVGVDLVPI-----------KP-----IPNCDTLVEDITTDECRSKLRK 104 (780)
T ss_pred cccccchheeeccCCcHHHHHHHHhCCCCceEEEeeeeec-----------cc-----CCccchhhhhhhHHHHHHHHHH
Confidence 355788999999999999999988888 678999999761 11 2344445555443 2
Q ss_pred -ccCCCeeEEEEcCCCCCCCC-------CCCCcHHHHHHHHhhccCCcEEEEEecCCCccccccccchhHHHHHHHHHHH
Q 035593 145 -SLKDGFSGILVDLFSKGSLL-------SELEDPNTWEKLRQCLRKGGRIMVNVGGSCVEAEDSRRDGKVVMEATLKAMH 216 (269)
Q Consensus 145 -~~~~~yD~I~~d~~~~~~~~-------~~l~~~e~~~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 216 (269)
...-+.|+|+.|.....+.. ....+...++.+...|+-||.++.-++.+.. ...++..+.
T Consensus 105 ~l~t~~advVLhDgapnVg~~w~~DA~~q~~L~l~al~LA~~~l~~~g~fvtkvfrs~d------------y~~ll~v~~ 172 (780)
T KOG1098|consen 105 ILKTWKADVVLHDGAPNVGGNWVQDAFQQACLTLRALKLATEFLAKGGTFVTKVFRSED------------YNGLLRVFG 172 (780)
T ss_pred HHHhCCCcEEeecCCCccchhHHHHHHHhhHHHHHHHHHHHHHHHhcCccccccccCCc------------chHHHHHHH
Confidence 12345699999976553321 1223557788888999999999888875421 345677777
Q ss_pred HHhcCceEEE
Q 035593 217 KVFGKKLYVL 226 (269)
Q Consensus 217 ~~F~~~v~~~ 226 (269)
+.|. .|...
T Consensus 173 qLf~-kv~~t 181 (780)
T KOG1098|consen 173 QLFK-KVEAT 181 (780)
T ss_pred HHHH-HHHhc
Confidence 7775 44444
No 291
>TIGR00561 pntA NAD(P) transhydrogenase, alpha subunit. In some species, such as Rhodospirillum rubrum, the alpha chain is replaced by two shorter chains, both with some homology to the full-length alpha chain modeled here. These score below the trusted cutoff.
Probab=95.30 E-value=0.14 Score=48.84 Aligned_cols=42 Identities=24% Similarity=0.442 Sum_probs=33.7
Q ss_pred CCCcEEEEcCcc-cHHHHHHHHHCCCceEEEEECChHHHHHHHH
Q 035593 77 PPGPIGILGFGA-GSAARLILDLYPEAVIHGWELDPSVIKVARE 119 (269)
Q Consensus 77 ~~~~VL~iG~G~-G~~~~~l~~~~p~~~v~~vEidp~~~~~a~~ 119 (269)
++.+||++|+|. |..+..+++.. ++.|+++|.+++..+.++.
T Consensus 163 p~akVlViGaG~iGl~Aa~~ak~l-GA~V~v~d~~~~rle~a~~ 205 (511)
T TIGR00561 163 PPAKVLVIGAGVAGLAAIGAANSL-GAIVRAFDTRPEVKEQVQS 205 (511)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHC-CCEEEEEeCCHHHHHHHHH
Confidence 578999999984 45556666643 6789999999999998887
No 292
>cd00315 Cyt_C5_DNA_methylase Cytosine-C5 specific DNA methylases; Methyl transfer reactions play an important role in many aspects of biology. Cytosine-specific DNA methylases are found both in prokaryotes and eukaryotes. DNA methylation, or the covalent addition of a methyl group to cytosine within the context of the CpG dinucleotide, has profound effects on the mammalian genome. These effects include transcriptional repression via inhibition of transcription factor binding or the recruitment of methyl-binding proteins and their associated chromatin remodeling factors, X chromosome inactivation, imprinting and the suppression of parasitic DNA sequences. DNA methylation is also essential for proper embryonic development and is an important player in both DNA repair and genome stability.
Probab=95.22 E-value=0.083 Score=46.45 Aligned_cols=119 Identities=12% Similarity=-0.008 Sum_probs=74.1
Q ss_pred cEEEEcCcccHHHHHHHHHCCCceEEEEECChHHHHHHHHhcCccccccCCCCcEEEEEccccccc--c-CCCeeEEEEc
Q 035593 80 PIGILGFGAGSAARLILDLYPEAVIHGWELDPSVIKVAREFFALEKLEKSYPDRLFVYVGNALKAS--L-KDGFSGILVD 156 (269)
Q Consensus 80 ~VL~iG~G~G~~~~~l~~~~p~~~v~~vEidp~~~~~a~~~~~~~~~~~~~~~rv~~~~~D~~~~~--~-~~~yD~I~~d 156 (269)
+++++-||.|.+...+.+. .-..+.++|+|+..++..+.++.. .++.+|..++. . ...+|+|+.+
T Consensus 2 ~v~dLFsG~Gg~~~gl~~~-G~~~v~a~e~~~~a~~~~~~N~~~-----------~~~~~Di~~~~~~~~~~~~D~l~~g 69 (275)
T cd00315 2 RVIDLFAGIGGFRLGLEKA-GFEIVAANEIDKSAAETYEANFPN-----------KLIEGDITKIDEKDFIPDIDLLTGG 69 (275)
T ss_pred cEEEEccCcchHHHHHHHc-CCEEEEEEeCCHHHHHHHHHhCCC-----------CCccCccccCchhhcCCCCCEEEeC
Confidence 6899999999999888773 233678899999999999988741 16678888872 2 4579999987
Q ss_pred CCCCCCC----CCCC------CcHHHHHHHHhhccCCcEEEEEecCCCccccccccchhHHHHHHHHHHHH
Q 035593 157 LFSKGSL----LSEL------EDPNTWEKLRQCLRKGGRIMVNVGGSCVEAEDSRRDGKVVMEATLKAMHK 217 (269)
Q Consensus 157 ~~~~~~~----~~~l------~~~e~~~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 217 (269)
.+-.... .... ...++++ +.+.++|.=+++=|+.+-.. .+....+..+++.|.+
T Consensus 70 pPCq~fS~ag~~~~~~d~r~~L~~~~~~-~i~~~~P~~~v~ENV~g~~~------~~~~~~~~~i~~~l~~ 133 (275)
T cd00315 70 FPCQPFSIAGKRKGFEDTRGTLFFEIIR-ILKEKKPKYFLLENVKGLLT------HDNGNTLKVILNTLEE 133 (275)
T ss_pred CCChhhhHHhhcCCCCCchHHHHHHHHH-HHHhcCCCEEEEEcCcchhc------cCchHHHHHHHHHHHh
Confidence 5332111 0001 0124444 33455787566657754321 0112345566666654
No 293
>PRK05708 2-dehydropantoate 2-reductase; Provisional
Probab=95.19 E-value=0.44 Score=42.51 Aligned_cols=99 Identities=15% Similarity=0.082 Sum_probs=58.5
Q ss_pred CcEEEEcCc--ccHHHHHHHHHCCCceEEEEECChHHHHHHHHhcCccccccCCCCcEEEEEccccccccCCCeeEEEEc
Q 035593 79 GPIGILGFG--AGSAARLILDLYPEAVIHGWELDPSVIKVAREFFALEKLEKSYPDRLFVYVGNALKASLKDGFSGILVD 156 (269)
Q Consensus 79 ~~VL~iG~G--~G~~~~~l~~~~p~~~v~~vEidp~~~~~a~~~~~~~~~~~~~~~rv~~~~~D~~~~~~~~~yD~I~~d 156 (269)
.+|+++|+| +|.++..|.+ .+..|+.+...++-++..++.-++.-.. ......+......-...+.||+|++.
T Consensus 3 m~I~IiGaGaiG~~~a~~L~~--~G~~V~lv~r~~~~~~~i~~~~Gl~i~~---~g~~~~~~~~~~~~~~~~~~D~viv~ 77 (305)
T PRK05708 3 MTWHILGAGSLGSLWACRLAR--AGLPVRLILRDRQRLAAYQQAGGLTLVE---QGQASLYAIPAETADAAEPIHRLLLA 77 (305)
T ss_pred ceEEEECCCHHHHHHHHHHHh--CCCCeEEEEechHHHHHHhhcCCeEEee---CCcceeeccCCCCcccccccCEEEEE
Confidence 479999998 5566666665 4678999999876666555432221000 01111111001111223589999985
Q ss_pred CCCCCCCCCCCCcHHHHHHHHhhccCCcEEEEE
Q 035593 157 LFSKGSLLSELEDPNTWEKLRQCLRKGGRIMVN 189 (269)
Q Consensus 157 ~~~~~~~~~~l~~~e~~~~~~~~L~pgG~l~~~ 189 (269)
.-.. .+.+.++.++..+.++..++.-
T Consensus 78 vK~~-------~~~~al~~l~~~l~~~t~vv~l 103 (305)
T PRK05708 78 CKAY-------DAEPAVASLAHRLAPGAELLLL 103 (305)
T ss_pred CCHH-------hHHHHHHHHHhhCCCCCEEEEE
Confidence 4322 2578999999999998866543
No 294
>PF01234 NNMT_PNMT_TEMT: NNMT/PNMT/TEMT family; InterPro: IPR000940 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Several cytoplasmic vertebrate methyltransferases are evolutionary related [], including nicotinamide N-methyltransferase (2.1.1.1 from EC) (NNMT); phenylethanolamine N-methyltransferase (2.1.1.28 from EC) (PNMT); and thioether S-methyltransferase (2.1.1.96 from EC) (TEMT). NNMT catalyzes the N-methylation of nicotinamide and other pyridines to form pyridinium ions. This activity is important for the biotransformation of many drugs and xenobiotic compounds. PNMT catalyzes the last step in catecholamine biosynthesis, the conversion of noradrenalin to adrenalin; and TEMT catalyzes the methylation of dimethyl sulphide into trimethylsulphonium. These three enzymes use S-adenosyl-L-methionine as the methyl donor. They are proteins of 30 to 32 kDa.; GO: 0008168 methyltransferase activity; PDB: 2IIP_C 3ROD_A 2OBF_A 3HCA_B 2ONY_B 3KR1_A 2OPB_B 3KQP_B 2AN4_B 3KQM_A ....
Probab=95.19 E-value=0.016 Score=50.32 Aligned_cols=113 Identities=10% Similarity=0.048 Sum_probs=63.9
Q ss_pred CCCcEEEEcCcccHHHHHHHHHCCC-ceEEEEECChHHHHHHHHhcCcc---cccc---------CC-----------CC
Q 035593 77 PPGPIGILGFGAGSAARLILDLYPE-AVIHGWELDPSVIKVAREFFALE---KLEK---------SY-----------PD 132 (269)
Q Consensus 77 ~~~~VL~iG~G~G~~~~~l~~~~p~-~~v~~vEidp~~~~~a~~~~~~~---~~~~---------~~-----------~~ 132 (269)
...++||||+|.-... ++...+. -+|+..|..+.-.+..++|+... .|.. .. ..
T Consensus 56 ~g~~llDiGsGPtiy~--~lsa~~~f~~I~l~dy~~~N~~el~kWl~~~~a~DWs~~~~~v~~lEg~~~~~~e~e~~lR~ 133 (256)
T PF01234_consen 56 KGETLLDIGSGPTIYQ--LLSACEWFEEIVLSDYSEQNREELEKWLRKEGAFDWSPFWKYVCELEGKREKWEEKEEKLRR 133 (256)
T ss_dssp -EEEEEEES-TT--GG--GTTGGGTEEEEEEEESSHHHHHHHHHHHTT-TS--THHHHHHHHHHTTSSSGHHHHHHHHHH
T ss_pred CCCEEEEeCCCcHHHh--hhhHHHhhcceEEeeccHhhHHHHHHHHCCCCCCCccHHHHHHHhccCCcchhhhHHHHHHH
Confidence 4668999999984443 2222233 38999999999999888886421 1210 00 11
Q ss_pred cE-EEEEcccccc---cc----CCCeeEEEEcCCCCCCCCCCCCcHHHHHHHHhhccCCcEEEEEec
Q 035593 133 RL-FVYVGNALKA---SL----KDGFSGILVDLFSKGSLLSELEDPNTWEKLRQCLRKGGRIMVNVG 191 (269)
Q Consensus 133 rv-~~~~~D~~~~---~~----~~~yD~I~~d~~~~~~~~~~l~~~e~~~~~~~~L~pgG~l~~~~~ 191 (269)
.| +++..|..+- .. +++||+|++-..-.......-.-...++++.+.|||||.|++...
T Consensus 134 ~Vk~Vv~cDV~~~~pl~~~~~~p~~~D~v~s~fcLE~a~~d~~~y~~al~ni~~lLkpGG~Lil~~~ 200 (256)
T PF01234_consen 134 AVKQVVPCDVTQPNPLDPPVVLPPKFDCVISSFCLESACKDLDEYRRALRNISSLLKPGGHLILAGV 200 (256)
T ss_dssp HEEEEEE--TTSSSTTTTS-SS-SSEEEEEEESSHHHH-SSHHHHHHHHHHHHTTEEEEEEEEEEEE
T ss_pred hhceEEEeeccCCCCCCccccCccchhhhhhhHHHHHHcCCHHHHHHHHHHHHHHcCCCcEEEEEEE
Confidence 23 3667787764 11 346999986432111011111124677888899999999988653
No 295
>KOG1501 consensus Arginine N-methyltransferase [General function prediction only]
Probab=95.18 E-value=0.053 Score=50.14 Aligned_cols=77 Identities=12% Similarity=0.111 Sum_probs=56.6
Q ss_pred CcEEEEcCcccHHHHHHHHHCCCceEEEEECChHHHHHHHHhcCccccccCCCCcEEEEEccccccc--cCCCeeEEEEc
Q 035593 79 GPIGILGFGAGSAARLILDLYPEAVIHGWELDPSVIKVAREFFALEKLEKSYPDRLFVYVGNALKAS--LKDGFSGILVD 156 (269)
Q Consensus 79 ~~VL~iG~G~G~~~~~l~~~~p~~~v~~vEidp~~~~~a~~~~~~~~~~~~~~~rv~~~~~D~~~~~--~~~~yD~I~~d 156 (269)
..||+||.|+|.++....+.. .-.|+++|.=.-|.+.|++-...++| .+++++|.---.+.. ...+-|+++-.
T Consensus 68 v~vLdigtGTGLLSmMAvrag-aD~vtA~EvfkPM~d~arkI~~kng~----SdkI~vInkrStev~vg~~~RadI~v~e 142 (636)
T KOG1501|consen 68 VFVLDIGTGTGLLSMMAVRAG-ADSVTACEVFKPMVDLARKIMHKNGM----SDKINVINKRSTEVKVGGSSRADIAVRE 142 (636)
T ss_pred EEEEEccCCccHHHHHHHHhc-CCeEEeehhhchHHHHHHHHHhcCCC----ccceeeeccccceeeecCcchhhhhhHh
Confidence 468999999999999888854 55899999999999999998766554 467888866544442 12346776654
Q ss_pred CCCC
Q 035593 157 LFSK 160 (269)
Q Consensus 157 ~~~~ 160 (269)
.|+.
T Consensus 143 ~fdt 146 (636)
T KOG1501|consen 143 DFDT 146 (636)
T ss_pred hhhh
Confidence 4443
No 296
>COG4798 Predicted methyltransferase [General function prediction only]
Probab=95.16 E-value=0.098 Score=43.39 Aligned_cols=109 Identities=13% Similarity=0.052 Sum_probs=67.6
Q ss_pred CCCCCCcEEEEcCcccHHHHHHHHHC-CCceEEEEECChHH----------HHHHHHhcCccccccCCCCcEEEEEcccc
Q 035593 74 PILPPGPIGILGFGAGSAARLILDLY-PEAVIHGWELDPSV----------IKVAREFFALEKLEKSYPDRLFVYVGNAL 142 (269)
Q Consensus 74 ~l~~~~~VL~iG~G~G~~~~~l~~~~-p~~~v~~vEidp~~----------~~~a~~~~~~~~~~~~~~~rv~~~~~D~~ 142 (269)
-++|...|.|+=-|+|..++.+.... |...|+++-.++.. -.++++-. ..+++++-.+..
T Consensus 45 Glkpg~tVid~~PGgGy~TrI~s~~vgp~G~Vy~~~p~e~~~~~~~~~~r~~~~~~e~~---------~aN~e~~~~~~~ 115 (238)
T COG4798 45 GLKPGATVIDLIPGGGYFTRIFSPAVGPKGKVYAYVPAELTKFAKREGPRLNAAAREPV---------YANVEVIGKPLV 115 (238)
T ss_pred ccCCCCEEEEEecCCccHhhhhchhcCCceeEEEecchhhcccccchhhhhhhhhhhhh---------hhhhhhhCCccc
Confidence 46789999999999999999988754 45577777654431 11111110 123444444444
Q ss_pred ccccCCCeeEEEEcCCCCCCC---CCCCCcHHHHHHHHhhccCCcEEEEEec
Q 035593 143 KASLKDGFSGILVDLFSKGSL---LSELEDPNTWEKLRQCLRKGGRIMVNVG 191 (269)
Q Consensus 143 ~~~~~~~yD~I~~d~~~~~~~---~~~l~~~e~~~~~~~~L~pgG~l~~~~~ 191 (269)
.+...+..|+++...+.+.-. ...-+...+++.+.+.|||||++.+--.
T Consensus 116 A~~~pq~~d~~~~~~~yhdmh~k~i~~~~A~~vna~vf~~LKPGGv~~V~dH 167 (238)
T COG4798 116 ALGAPQKLDLVPTAQNYHDMHNKNIHPATAAKVNAAVFKALKPGGVYLVEDH 167 (238)
T ss_pred ccCCCCcccccccchhhhhhhccccCcchHHHHHHHHHHhcCCCcEEEEEec
Confidence 444556677776533332211 1112346899999999999999988654
No 297
>KOG2798 consensus Putative trehalase [Carbohydrate transport and metabolism]
Probab=94.95 E-value=0.073 Score=47.22 Aligned_cols=107 Identities=16% Similarity=0.174 Sum_probs=65.2
Q ss_pred CCcEEEEcCcccHHHHHHHHHCCCceEEEEECChHHHHHH-------HHh--cCccccc-------c-------------
Q 035593 78 PGPIGILGFGAGSAARLILDLYPEAVIHGWELDPSVIKVA-------REF--FALEKLE-------K------------- 128 (269)
Q Consensus 78 ~~~VL~iG~G~G~~~~~l~~~~p~~~v~~vEidp~~~~~a-------~~~--~~~~~~~-------~------------- 128 (269)
+.+||.=|||.|.++..|+...+.++.. |.+--|+=.. +.. +...+|. .
T Consensus 151 ki~iLvPGaGlGRLa~dla~~G~~~qGN--EfSy~Mli~S~FiLN~~~~~nq~~IYPfIh~~sn~~~~dDQlrpi~~PD~ 228 (369)
T KOG2798|consen 151 KIRILVPGAGLGRLAYDLACLGFKCQGN--EFSYFMLICSSFILNYCKQENQFTIYPFIHQYSNSLSRDDQLRPISIPDI 228 (369)
T ss_pred CceEEecCCCchhHHHHHHHhccccccc--HHHHHHHHHHHHHHHhhccCCcEEEEeeeeccccccccccccccccCccc
Confidence 6789999999999999999865554433 7665554222 110 0011110 0
Q ss_pred ------CCCCcEEEEEcccccc----ccCCCeeEEEEcCCCCCCCCCCCCcHHHHHHHHhhccCCcEEEEEec
Q 035593 129 ------SYPDRLFVYVGNALKA----SLKDGFSGILVDLFSKGSLLSELEDPNTWEKLRQCLRKGGRIMVNVG 191 (269)
Q Consensus 129 ------~~~~rv~~~~~D~~~~----~~~~~yD~I~~d~~~~~~~~~~l~~~e~~~~~~~~L~pgG~l~~~~~ 191 (269)
.....+.+..||+.+. ...+.||+|+.+.|-. .. -.-.++++.+.+.|+|||+.+ |+.
T Consensus 229 ~p~~~~~~~~~fsicaGDF~evy~~s~~~~~~d~VvTcfFID-Ta---~NileYi~tI~~iLk~GGvWi-NlG 296 (369)
T KOG2798|consen 229 HPASSNGNTGSFSICAGDFLEVYGTSSGAGSYDVVVTCFFID-TA---HNILEYIDTIYKILKPGGVWI-NLG 296 (369)
T ss_pred cccccCCCCCCccccccceeEEecCcCCCCccceEEEEEEee-ch---HHHHHHHHHHHHhccCCcEEE-ecc
Confidence 0112344456888776 2335799998764321 11 113699999999999999874 653
No 298
>PF00107 ADH_zinc_N: Zinc-binding dehydrogenase; InterPro: IPR013149 Alcohol dehydrogenase (1.1.1.1 from EC) (ADH) catalyzes the reversible oxidation of alcohols to their corresponding acetaldehyde or ketone with the concomitant reduction of NAD: alcohol + NAD = aldehyde or ketone + NADH Currently three structurally and catalytically different types of alcohol dehydrogenases are known: Zinc-containing 'long-chain' alcohol dehydrogenases. Insect-type, or 'short-chain' alcohol dehydrogenases. Iron-containing alcohol dehydrogenases. Zinc-containing ADH's [, ] are dimeric or tetrameric enzymes that bind two atoms of zinc per subunit. One of the zinc atom is essential for catalytic activity while the other is not. Both zinc atoms are coordinated by either cysteine or histidine residues; the catalytic zinc is coordinated by two cysteines and one histidine. Zinc-containing ADH's are found in bacteria, mammals, plants, and in fungi. In many species there is more than one isozyme (for example, humans have at least six isozymes, yeast have three, etc.). A number of other zinc-dependent dehydrogenases are closely related to zinc ADH [] and are included in this family. Sorbitol dehydrogenase (1.1.1.14 from EC) L-threonine 3-dehydrogenase (1.1.1.103 from EC) Glutathione-dependent formaldehyde dehydrogenase (1.1.1.284 from EC) Mannitol dehydrogenase (1.1.1.255 from EC) In addition, this family includes NADP-dependent quinone oxidoreductase (1.6.5.5 from EC), an enzyme found in bacteria (gene qor), in yeast and in mammals where, in some species such as rodents, it has been recruited as an eye lens protein and is known as zeta-crystallin []. The sequence of quinone oxidoreductase is distantly related to that other zinc-containing alcohol dehydrogenases and it lacks the zinc-ligand residues. The torpedo fish and mammalian synaptic vesicle membrane protein vat-1 is related to qor. This entry represents the cofactor-binding domain of these enzymes, which is normally found towards the C terminus. Structural studies indicate that it forms a classical Rossman fold that reversibly binds NAD(H) [, , ].; GO: 0008270 zinc ion binding, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3PI7_A 3COS_D 1VJ1_A 2ZB3_A 1PIW_B 1Q1N_A 1PS0_A 2EER_B 3KRT_A 1ZSY_A ....
Probab=94.92 E-value=0.23 Score=37.81 Aligned_cols=84 Identities=19% Similarity=0.156 Sum_probs=60.0
Q ss_pred cccHHHHHHHHHCCCceEEEEECChHHHHHHHHhcCccccccCCCCcEEEEEcccccc-------ccCCCeeEEEEcCCC
Q 035593 87 GAGSAARLILDLYPEAVIHGWELDPSVIKVAREFFALEKLEKSYPDRLFVYVGNALKA-------SLKDGFSGILVDLFS 159 (269)
Q Consensus 87 G~G~~~~~l~~~~p~~~v~~vEidp~~~~~a~~~~~~~~~~~~~~~rv~~~~~D~~~~-------~~~~~yD~I~~d~~~ 159 (269)
|-|..+..+++... .+|++++.+++-.+.+++. +.. .++..+-.++ .....+|+||-. ..
T Consensus 1 ~vG~~a~q~ak~~G-~~vi~~~~~~~k~~~~~~~-Ga~----------~~~~~~~~~~~~~i~~~~~~~~~d~vid~-~g 67 (130)
T PF00107_consen 1 GVGLMAIQLAKAMG-AKVIATDRSEEKLELAKEL-GAD----------HVIDYSDDDFVEQIRELTGGRGVDVVIDC-VG 67 (130)
T ss_dssp HHHHHHHHHHHHTT-SEEEEEESSHHHHHHHHHT-TES----------EEEETTTSSHHHHHHHHTTTSSEEEEEES-SS
T ss_pred ChHHHHHHHHHHcC-CEEEEEECCHHHHHHHHhh-ccc----------ccccccccccccccccccccccceEEEEe-cC
Confidence 45888888888765 9999999999999999875 321 2222222212 334589999843 22
Q ss_pred CCCCCCCCCcHHHHHHHHhhccCCcEEEEEecC
Q 035593 160 KGSLLSELEDPNTWEKLRQCLRKGGRIMVNVGG 192 (269)
Q Consensus 160 ~~~~~~~l~~~e~~~~~~~~L~pgG~l~~~~~~ 192 (269)
..+.++.+.+.|+++|.+++-...
T Consensus 68 ---------~~~~~~~~~~~l~~~G~~v~vg~~ 91 (130)
T PF00107_consen 68 ---------SGDTLQEAIKLLRPGGRIVVVGVY 91 (130)
T ss_dssp ---------SHHHHHHHHHHEEEEEEEEEESST
T ss_pred ---------cHHHHHHHHHHhccCCEEEEEEcc
Confidence 368999999999999999886554
No 299
>cd08237 ribitol-5-phosphate_DH ribitol-5-phosphate dehydrogenase. NAD-linked ribitol-5-phosphate dehydrogenase, a member of the MDR/zinc-dependent alcohol dehydrogenase-like family, oxidizes the phosphate ester of ribitol-5-phosphate to xylulose-5-phosphate of the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (
Probab=94.80 E-value=0.31 Score=43.97 Aligned_cols=93 Identities=14% Similarity=0.175 Sum_probs=59.7
Q ss_pred CCCCcEEEEcCc-ccHHHHHHHHH-CCCceEEEEECChHHHHHHHHhcCccccccCCCCcEEEEEccccccccCCCeeEE
Q 035593 76 LPPGPIGILGFG-AGSAARLILDL-YPEAVIHGWELDPSVIKVAREFFALEKLEKSYPDRLFVYVGNALKASLKDGFSGI 153 (269)
Q Consensus 76 ~~~~~VL~iG~G-~G~~~~~l~~~-~p~~~v~~vEidp~~~~~a~~~~~~~~~~~~~~~rv~~~~~D~~~~~~~~~yD~I 153 (269)
.+..+||++|+| .|.++..++++ ..+.+|++++.+++-++.|++ ++. ...+ . +......+|+|
T Consensus 162 ~~g~~VlV~G~G~vGl~~~~~a~~~~g~~~vi~~~~~~~k~~~a~~-~~~----------~~~~-~---~~~~~~g~d~v 226 (341)
T cd08237 162 KDRNVIGVWGDGNLGYITALLLKQIYPESKLVVFGKHQEKLDLFSF-ADE----------TYLI-D---DIPEDLAVDHA 226 (341)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHhcCCCcEEEEeCcHhHHHHHhh-cCc----------eeeh-h---hhhhccCCcEE
Confidence 467899999976 34444555554 446789999999988888875 321 1111 1 11112258988
Q ss_pred EEcCCCCCCCCCCCCcHHHHHHHHhhccCCcEEEEEe
Q 035593 154 LVDLFSKGSLLSELEDPNTWEKLRQCLRKGGRIMVNV 190 (269)
Q Consensus 154 ~~d~~~~~~~~~~l~~~e~~~~~~~~L~pgG~l~~~~ 190 (269)
+ |+.... .....+....+.|+++|.+++.-
T Consensus 227 i-D~~G~~------~~~~~~~~~~~~l~~~G~iv~~G 256 (341)
T cd08237 227 F-ECVGGR------GSQSAINQIIDYIRPQGTIGLMG 256 (341)
T ss_pred E-ECCCCC------ccHHHHHHHHHhCcCCcEEEEEe
Confidence 7 543321 13467888899999999988654
No 300
>PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus. The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A ....
Probab=94.77 E-value=0.19 Score=37.67 Aligned_cols=91 Identities=19% Similarity=0.168 Sum_probs=59.0
Q ss_pred EEEEcCcccHHHHHHHHHC--CCceEEEEECChHHHHHHHHhcCccccccCCCCcEEEEEcccccc-----ccCCCeeEE
Q 035593 81 IGILGFGAGSAARLILDLY--PEAVIHGWELDPSVIKVAREFFALEKLEKSYPDRLFVYVGNALKA-----SLKDGFSGI 153 (269)
Q Consensus 81 VL~iG~G~G~~~~~l~~~~--p~~~v~~vEidp~~~~~a~~~~~~~~~~~~~~~rv~~~~~D~~~~-----~~~~~yD~I 153 (269)
|+.+|+| .++..+++.. .+.+|+++|.|++.++.+++.. +.++.+|+.+. ..-++.|.|
T Consensus 1 vvI~G~g--~~~~~i~~~L~~~~~~vvvid~d~~~~~~~~~~~------------~~~i~gd~~~~~~l~~a~i~~a~~v 66 (116)
T PF02254_consen 1 VVIIGYG--RIGREIAEQLKEGGIDVVVIDRDPERVEELREEG------------VEVIYGDATDPEVLERAGIEKADAV 66 (116)
T ss_dssp EEEES-S--HHHHHHHHHHHHTTSEEEEEESSHHHHHHHHHTT------------SEEEES-TTSHHHHHHTTGGCESEE
T ss_pred eEEEcCC--HHHHHHHHHHHhCCCEEEEEECCcHHHHHHHhcc------------cccccccchhhhHHhhcCccccCEE
Confidence 4566654 5665555543 2458999999999998887652 67999999876 234689998
Q ss_pred EEcCCCCCCCCCCCCcHHHHHHHHhhccCCcEEEEEecC
Q 035593 154 LVDLFSKGSLLSELEDPNTWEKLRQCLRKGGRIMVNVGG 192 (269)
Q Consensus 154 ~~d~~~~~~~~~~l~~~e~~~~~~~~L~pgG~l~~~~~~ 192 (269)
++...+.. .--......+.+.|...+++-+.+
T Consensus 67 v~~~~~d~-------~n~~~~~~~r~~~~~~~ii~~~~~ 98 (116)
T PF02254_consen 67 VILTDDDE-------ENLLIALLARELNPDIRIIARVND 98 (116)
T ss_dssp EEESSSHH-------HHHHHHHHHHHHTTTSEEEEEESS
T ss_pred EEccCCHH-------HHHHHHHHHHHHCCCCeEEEEECC
Confidence 87543221 112333445667788888877754
No 301
>cd08254 hydroxyacyl_CoA_DH 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase, N-benzyl-3-pyrrolidinol dehydrogenase, and other MDR family members. This group contains enzymes of the zinc-dependent alcohol dehydrogenase family, including members (aka MDR) identified as 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase and N-benzyl-3-pyrrolidinol dehydrogenase. 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase catalyzes the conversion of 6-Hydroxycyclohex-1-enecarbonyl-CoA and NAD+ to 6-Ketoxycyclohex-1-ene-1-carboxyl-CoA,NADH, and H+. This group displays the characteristic catalytic and structural zinc sites of the zinc-dependent alcohol dehydrogenases. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentatio
Probab=94.77 E-value=0.31 Score=43.25 Aligned_cols=97 Identities=23% Similarity=0.371 Sum_probs=62.4
Q ss_pred CCCCCcEEEEcCc-ccHHHHHHHHHCCCceEEEEECChHHHHHHHHhcCccccccCCCCcEEEEEccccc---cccCCCe
Q 035593 75 ILPPGPIGILGFG-AGSAARLILDLYPEAVIHGWELDPSVIKVAREFFALEKLEKSYPDRLFVYVGNALK---ASLKDGF 150 (269)
Q Consensus 75 l~~~~~VL~iG~G-~G~~~~~l~~~~p~~~v~~vEidp~~~~~a~~~~~~~~~~~~~~~rv~~~~~D~~~---~~~~~~y 150 (269)
+.+..+||+.|+| .|..+..+++.. +.+|++++.+++..+.+++ ++... -+.....+... ....+.+
T Consensus 163 ~~~~~~vli~g~g~vG~~~~~la~~~-G~~V~~~~~s~~~~~~~~~-~g~~~-------~~~~~~~~~~~~~~~~~~~~~ 233 (338)
T cd08254 163 VKPGETVLVIGLGGLGLNAVQIAKAM-GAAVIAVDIKEEKLELAKE-LGADE-------VLNSLDDSPKDKKAAGLGGGF 233 (338)
T ss_pred CCCCCEEEEECCcHHHHHHHHHHHHc-CCEEEEEcCCHHHHHHHHH-hCCCE-------EEcCCCcCHHHHHHHhcCCCc
Confidence 4567899998765 366777777754 6789999999999988865 33211 01100001111 1234579
Q ss_pred eEEEEcCCCCCCCCCCCCcHHHHHHHHhhccCCcEEEEEe
Q 035593 151 SGILVDLFSKGSLLSELEDPNTWEKLRQCLRKGGRIMVNV 190 (269)
Q Consensus 151 D~I~~d~~~~~~~~~~l~~~e~~~~~~~~L~pgG~l~~~~ 190 (269)
|+|+. ... ....++.+.+.|+++|.++.-.
T Consensus 234 D~vid-~~g---------~~~~~~~~~~~l~~~G~~v~~g 263 (338)
T cd08254 234 DVIFD-FVG---------TQPTFEDAQKAVKPGGRIVVVG 263 (338)
T ss_pred eEEEE-CCC---------CHHHHHHHHHHhhcCCEEEEEC
Confidence 98873 221 2467888999999999998754
No 302
>TIGR03451 mycoS_dep_FDH mycothiol-dependent formaldehyde dehydrogenase. Members of this protein family are mycothiol-dependent formaldehyde dehydrogenase (EC 1.2.1.66). This protein is found, so far, only in the Actinobacteria (Mycobacterium sp., Streptomyces sp., Corynebacterium sp., and related species), where mycothione replaces glutathione.
Probab=94.73 E-value=0.3 Score=44.28 Aligned_cols=97 Identities=19% Similarity=0.226 Sum_probs=60.7
Q ss_pred CCCCCcEEEEcCc-ccHHHHHHHHHCCCc-eEEEEECChHHHHHHHHhcCccccccCCCCcEEEEEccccc-c---ccCC
Q 035593 75 ILPPGPIGILGFG-AGSAARLILDLYPEA-VIHGWELDPSVIKVAREFFALEKLEKSYPDRLFVYVGNALK-A---SLKD 148 (269)
Q Consensus 75 l~~~~~VL~iG~G-~G~~~~~l~~~~p~~-~v~~vEidp~~~~~a~~~~~~~~~~~~~~~rv~~~~~D~~~-~---~~~~ 148 (269)
+.+..+||+.|+| .|..+..+++.. ++ +|++++.+++-.+.+++ ++... -+.....|..+ . ....
T Consensus 174 ~~~g~~VlV~G~g~vG~~a~~~ak~~-G~~~Vi~~~~~~~~~~~~~~-~Ga~~-------~i~~~~~~~~~~i~~~~~~~ 244 (358)
T TIGR03451 174 VKRGDSVAVIGCGGVGDAAIAGAALA-GASKIIAVDIDDRKLEWARE-FGATH-------TVNSSGTDPVEAIRALTGGF 244 (358)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHc-CCCeEEEEcCCHHHHHHHHH-cCCce-------EEcCCCcCHHHHHHHHhCCC
Confidence 4568899999875 344556666654 55 59999999999999865 34211 01111112211 1 2234
Q ss_pred CeeEEEEcCCCCCCCCCCCCcHHHHHHHHhhccCCcEEEEEe
Q 035593 149 GFSGILVDLFSKGSLLSELEDPNTWEKLRQCLRKGGRIMVNV 190 (269)
Q Consensus 149 ~yD~I~~d~~~~~~~~~~l~~~e~~~~~~~~L~pgG~l~~~~ 190 (269)
.+|+|+ |... ..+.++.+.+.|+++|.+++.-
T Consensus 245 g~d~vi-d~~g---------~~~~~~~~~~~~~~~G~iv~~G 276 (358)
T TIGR03451 245 GADVVI-DAVG---------RPETYKQAFYARDLAGTVVLVG 276 (358)
T ss_pred CCCEEE-ECCC---------CHHHHHHHHHHhccCCEEEEEC
Confidence 689887 4332 1356777888999999988643
No 303
>TIGR03366 HpnZ_proposed putative phosphonate catabolism associated alcohol dehydrogenase. This clade of zinc-binding alcohol dehydrogenases (members of pfam00107) are repeatedly associated with genes proposed to be involved with the catabolism of phosphonate compounds.
Probab=94.67 E-value=0.32 Score=42.52 Aligned_cols=97 Identities=14% Similarity=0.110 Sum_probs=59.1
Q ss_pred CCCcEEEEcCc-ccHHHHHHHHHCCCc-eEEEEECChHHHHHHHHhcCccccccCCCCcEEEEEccccccccCCCeeEEE
Q 035593 77 PPGPIGILGFG-AGSAARLILDLYPEA-VIHGWELDPSVIKVAREFFALEKLEKSYPDRLFVYVGNALKASLKDGFSGIL 154 (269)
Q Consensus 77 ~~~~VL~iG~G-~G~~~~~l~~~~p~~-~v~~vEidp~~~~~a~~~~~~~~~~~~~~~rv~~~~~D~~~~~~~~~yD~I~ 154 (269)
+..+||++|+| .|.++..+++.. +. +|++++.+++-.+.+++. +..... +.. . .............+|+|+
T Consensus 120 ~g~~VlV~G~G~vG~~~~~~ak~~-G~~~Vi~~~~~~~r~~~a~~~-Ga~~~i---~~~-~-~~~~~~~~~~~~g~d~vi 192 (280)
T TIGR03366 120 KGRRVLVVGAGMLGLTAAAAAAAA-GAARVVAADPSPDRRELALSF-GATALA---EPE-V-LAERQGGLQNGRGVDVAL 192 (280)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHc-CCCEEEEECCCHHHHHHHHHc-CCcEec---Cch-h-hHHHHHHHhCCCCCCEEE
Confidence 67899999875 344555566654 55 499999999998888774 321100 000 0 000011112334699987
Q ss_pred EcCCCCCCCCCCCCcHHHHHHHHhhccCCcEEEEEe
Q 035593 155 VDLFSKGSLLSELEDPNTWEKLRQCLRKGGRIMVNV 190 (269)
Q Consensus 155 ~d~~~~~~~~~~l~~~e~~~~~~~~L~pgG~l~~~~ 190 (269)
|... ....++.+.+.|+++|.+++.-
T Consensus 193 -d~~G---------~~~~~~~~~~~l~~~G~iv~~G 218 (280)
T TIGR03366 193 -EFSG---------ATAAVRACLESLDVGGTAVLAG 218 (280)
T ss_pred -ECCC---------ChHHHHHHHHHhcCCCEEEEec
Confidence 3322 2457888889999999998754
No 304
>PRK09260 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=94.55 E-value=0.12 Score=45.64 Aligned_cols=105 Identities=12% Similarity=-0.019 Sum_probs=62.8
Q ss_pred CcEEEEcCc--ccHHHHHHHHHCCCceEEEEECChHHHHHHHHhcCc--ccc---ccCC-------CCcEEEEEcccccc
Q 035593 79 GPIGILGFG--AGSAARLILDLYPEAVIHGWELDPSVIKVAREFFAL--EKL---EKSY-------PDRLFVYVGNALKA 144 (269)
Q Consensus 79 ~~VL~iG~G--~G~~~~~l~~~~p~~~v~~vEidp~~~~~a~~~~~~--~~~---~~~~-------~~rv~~~~~D~~~~ 144 (269)
++|..||+| ++.++..+++ .+.+|+++|++++.++.+.++... ... .... ..+++.. .|..
T Consensus 2 ~~V~VIG~G~mG~~iA~~la~--~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~-~~~~-- 76 (288)
T PRK09260 2 EKLVVVGAGVMGRGIAYVFAV--SGFQTTLVDIKQEQLESAQQEIASIFEQGVARGKLTEAARQAALARLSYS-LDLK-- 76 (288)
T ss_pred cEEEEECccHHHHHHHHHHHh--CCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEEe-CcHH--
Confidence 479999998 4455555554 367899999999999887764310 000 0000 0112211 1211
Q ss_pred ccCCCeeEEEEcCCCCCCCCCCCCcHHHHHHHHhhccCCcEEEEEecCC
Q 035593 145 SLKDGFSGILVDLFSKGSLLSELEDPNTWEKLRQCLRKGGRIMVNVGGS 193 (269)
Q Consensus 145 ~~~~~yD~I~~d~~~~~~~~~~l~~~e~~~~~~~~L~pgG~l~~~~~~~ 193 (269)
..-...|+|+...+... -...++|..+.+.++++.++++|..+.
T Consensus 77 ~~~~~aD~Vi~avpe~~-----~~k~~~~~~l~~~~~~~~il~~~tSt~ 120 (288)
T PRK09260 77 AAVADADLVIEAVPEKL-----ELKKAVFETADAHAPAECYIATNTSTM 120 (288)
T ss_pred HhhcCCCEEEEeccCCH-----HHHHHHHHHHHhhCCCCcEEEEcCCCC
Confidence 12345799997654321 013478888889999988888887554
No 305
>PRK06249 2-dehydropantoate 2-reductase; Provisional
Probab=94.48 E-value=0.58 Score=41.80 Aligned_cols=97 Identities=15% Similarity=0.126 Sum_probs=54.5
Q ss_pred CCcEEEEcCc--ccHHHHHHHHHCCCceEEEEECChHHHHHHHHhcCccccccCCCCcEEEEEcccccc-ccCCCeeEEE
Q 035593 78 PGPIGILGFG--AGSAARLILDLYPEAVIHGWELDPSVIKVAREFFALEKLEKSYPDRLFVYVGNALKA-SLKDGFSGIL 154 (269)
Q Consensus 78 ~~~VL~iG~G--~G~~~~~l~~~~p~~~v~~vEidp~~~~~a~~~~~~~~~~~~~~~rv~~~~~D~~~~-~~~~~yD~I~ 154 (269)
..+|++||+| ++.++..|.+ .+.+|+.+..++. +..++. ++.-.. ......+....+... ...+.+|+|+
T Consensus 5 ~m~I~IiG~GaiG~~lA~~L~~--~g~~V~~~~r~~~--~~~~~~-g~~~~~--~~~~~~~~~~~~~~~~~~~~~~D~vi 77 (313)
T PRK06249 5 TPRIGIIGTGAIGGFYGAMLAR--AGFDVHFLLRSDY--EAVREN-GLQVDS--VHGDFHLPPVQAYRSAEDMPPCDWVL 77 (313)
T ss_pred CcEEEEECCCHHHHHHHHHHHH--CCCeEEEEEeCCH--HHHHhC-CeEEEe--CCCCeeecCceEEcchhhcCCCCEEE
Confidence 4589999998 5556666655 3678888888762 222222 211000 011111111111111 2235799999
Q ss_pred EcCCCCCCCCCCCCcHHHHHHHHhhccCCcEEEE
Q 035593 155 VDLFSKGSLLSELEDPNTWEKLRQCLRKGGRIMV 188 (269)
Q Consensus 155 ~d~~~~~~~~~~l~~~e~~~~~~~~L~pgG~l~~ 188 (269)
+..-.. .+.+.++.+...+++++.++.
T Consensus 78 lavK~~-------~~~~~~~~l~~~~~~~~~iv~ 104 (313)
T PRK06249 78 VGLKTT-------ANALLAPLIPQVAAPDAKVLL 104 (313)
T ss_pred EEecCC-------ChHhHHHHHhhhcCCCCEEEE
Confidence 865432 246788899999999987654
No 306
>TIGR03201 dearomat_had 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase. Members of this protein family are 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase, an enzyme in the anaerobic metabolism of aromatic enzymes by way of benzoyl-CoA, as seen in Thauera aromatica, Geobacter metallireducens, and Azoarcus sp. The experimentally characterized form from T. aromatica uses only NAD+, not NADP+. Note that Rhodopseudomonas palustris uses a different pathway to perform a similar degradation of benzoyl-CoA to 3-hydroxpimelyl-CoA.
Probab=94.39 E-value=0.16 Score=45.86 Aligned_cols=97 Identities=16% Similarity=0.203 Sum_probs=60.1
Q ss_pred CCCCCcEEEEcCcc-cHHHHHHHHHCCCceEEEEECChHHHHHHHHhcCccccccCCCCcEEEEEc---cccc----ccc
Q 035593 75 ILPPGPIGILGFGA-GSAARLILDLYPEAVIHGWELDPSVIKVAREFFALEKLEKSYPDRLFVYVG---NALK----ASL 146 (269)
Q Consensus 75 l~~~~~VL~iG~G~-G~~~~~l~~~~p~~~v~~vEidp~~~~~a~~~~~~~~~~~~~~~rv~~~~~---D~~~----~~~ 146 (269)
+.+..+||++|+|+ |..+..+++.. +.+|++++.+++-.+.+++ ++... -+..... |..+ +..
T Consensus 164 ~~~g~~VlV~G~G~vG~~a~~~a~~~-G~~vi~~~~~~~~~~~~~~-~Ga~~-------~i~~~~~~~~~~~~~~~~~t~ 234 (349)
T TIGR03201 164 LKKGDLVIVIGAGGVGGYMVQTAKAM-GAAVVAIDIDPEKLEMMKG-FGADL-------TLNPKDKSAREVKKLIKAFAK 234 (349)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHc-CCeEEEEcCCHHHHHHHHH-hCCce-------EecCccccHHHHHHHHHhhcc
Confidence 45678999999864 56666667654 6689999999999998866 44211 0111111 1111 112
Q ss_pred CCCee----EEEEcCCCCCCCCCCCCcHHHHHHHHhhccCCcEEEEEe
Q 035593 147 KDGFS----GILVDLFSKGSLLSELEDPNTWEKLRQCLRKGGRIMVNV 190 (269)
Q Consensus 147 ~~~yD----~I~~d~~~~~~~~~~l~~~e~~~~~~~~L~pgG~l~~~~ 190 (269)
...+| +|+ |+.. ....++.+.+.|+++|.+++.-
T Consensus 235 ~~g~d~~~d~v~-d~~g---------~~~~~~~~~~~l~~~G~iv~~G 272 (349)
T TIGR03201 235 ARGLRSTGWKIF-ECSG---------SKPGQESALSLLSHGGTLVVVG 272 (349)
T ss_pred cCCCCCCcCEEE-ECCC---------ChHHHHHHHHHHhcCCeEEEEC
Confidence 23455 444 5432 2457777888999999997653
No 307
>PRK07502 cyclohexadienyl dehydrogenase; Validated
Probab=94.34 E-value=0.67 Score=41.27 Aligned_cols=92 Identities=21% Similarity=0.215 Sum_probs=55.8
Q ss_pred CcEEEEcCcc--cHHHHHHHHHCCCceEEEEECChHHHHHHHHhcCccccccCCCCcEEEEEccccccccCCCeeEEEEc
Q 035593 79 GPIGILGFGA--GSAARLILDLYPEAVIHGWELDPSVIKVAREFFALEKLEKSYPDRLFVYVGNALKASLKDGFSGILVD 156 (269)
Q Consensus 79 ~~VL~iG~G~--G~~~~~l~~~~p~~~v~~vEidp~~~~~a~~~~~~~~~~~~~~~rv~~~~~D~~~~~~~~~yD~I~~d 156 (269)
.+|..||+|. +.++..+.+.....+|++++.+++..+.+++. +.. .. ...+.. ..-...|+|++.
T Consensus 7 ~~I~IIG~G~mG~sla~~l~~~g~~~~V~~~dr~~~~~~~a~~~-g~~---------~~-~~~~~~--~~~~~aDvViia 73 (307)
T PRK07502 7 DRVALIGIGLIGSSLARAIRRLGLAGEIVGADRSAETRARAREL-GLG---------DR-VTTSAA--EAVKGADLVILC 73 (307)
T ss_pred cEEEEEeeCHHHHHHHHHHHhcCCCcEEEEEECCHHHHHHHHhC-CCC---------ce-ecCCHH--HHhcCCCEEEEC
Confidence 5799999884 45555555532224899999999988777653 211 11 111211 112468999986
Q ss_pred CCCCCCCCCCCCcHHHHHHHHhhccCCcEEEEEec
Q 035593 157 LFSKGSLLSELEDPNTWEKLRQCLRKGGRIMVNVG 191 (269)
Q Consensus 157 ~~~~~~~~~~l~~~e~~~~~~~~L~pgG~l~~~~~ 191 (269)
.... ...++++.+...++++.++ +.+.
T Consensus 74 vp~~-------~~~~v~~~l~~~l~~~~iv-~dvg 100 (307)
T PRK07502 74 VPVG-------ASGAVAAEIAPHLKPGAIV-TDVG 100 (307)
T ss_pred CCHH-------HHHHHHHHHHhhCCCCCEE-EeCc
Confidence 5432 1356778888888887754 4553
No 308
>cd08230 glucose_DH Glucose dehydrogenase. Glucose dehydrogenase (GlcDH), a member of the medium chain dehydrogenase/zinc-dependent alcohol dehydrogenase-like family, catalyzes the NADP(+)-dependent oxidation of glucose to gluconate, the first step in the Entner-Doudoroff pathway, an alternative to or substitute for glycolysis or the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossman fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contai
Probab=94.34 E-value=0.41 Score=43.30 Aligned_cols=95 Identities=17% Similarity=0.103 Sum_probs=59.3
Q ss_pred CCCCcEEEEcCc-ccHHHHHHHHHCCCceEEEEEC---ChHHHHHHHHhcCccccccCCCCcEEEEEccccccccCCCee
Q 035593 76 LPPGPIGILGFG-AGSAARLILDLYPEAVIHGWEL---DPSVIKVAREFFALEKLEKSYPDRLFVYVGNALKASLKDGFS 151 (269)
Q Consensus 76 ~~~~~VL~iG~G-~G~~~~~l~~~~p~~~v~~vEi---dp~~~~~a~~~~~~~~~~~~~~~rv~~~~~D~~~~~~~~~yD 151 (269)
.+..+||++|+| .|.++..+++.. +++|++++. +++-.+.+++ ++... +.....|..+......+|
T Consensus 171 ~~g~~vlI~G~G~vG~~a~q~ak~~-G~~vi~~~~~~~~~~~~~~~~~-~Ga~~--------v~~~~~~~~~~~~~~~~d 240 (355)
T cd08230 171 WNPRRALVLGAGPIGLLAALLLRLR-GFEVYVLNRRDPPDPKADIVEE-LGATY--------VNSSKTPVAEVKLVGEFD 240 (355)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHc-CCeEEEEecCCCCHHHHHHHHH-cCCEE--------ecCCccchhhhhhcCCCC
Confidence 467899999986 356666777754 668999987 6888888775 34211 100001110011234689
Q ss_pred EEEEcCCCCCCCCCCCCcHHHHHHHHhhccCCcEEEEEe
Q 035593 152 GILVDLFSKGSLLSELEDPNTWEKLRQCLRKGGRIMVNV 190 (269)
Q Consensus 152 ~I~~d~~~~~~~~~~l~~~e~~~~~~~~L~pgG~l~~~~ 190 (269)
+||- ... ....+..+.+.|+++|.+++.-
T Consensus 241 ~vid-~~g---------~~~~~~~~~~~l~~~G~~v~~G 269 (355)
T cd08230 241 LIIE-ATG---------VPPLAFEALPALAPNGVVILFG 269 (355)
T ss_pred EEEE-CcC---------CHHHHHHHHHHccCCcEEEEEe
Confidence 8873 322 2357888899999999887643
No 309
>PRK10309 galactitol-1-phosphate dehydrogenase; Provisional
Probab=94.27 E-value=0.36 Score=43.46 Aligned_cols=98 Identities=12% Similarity=0.064 Sum_probs=59.9
Q ss_pred CCCCCcEEEEcCc-ccHHHHHHHHHCCCce-EEEEECChHHHHHHHHhcCccccccCCCCcEEEEEcccccc---ccCCC
Q 035593 75 ILPPGPIGILGFG-AGSAARLILDLYPEAV-IHGWELDPSVIKVAREFFALEKLEKSYPDRLFVYVGNALKA---SLKDG 149 (269)
Q Consensus 75 l~~~~~VL~iG~G-~G~~~~~l~~~~p~~~-v~~vEidp~~~~~a~~~~~~~~~~~~~~~rv~~~~~D~~~~---~~~~~ 149 (269)
+.+..+||+.|+| .|..+..+++.. +++ |++++.+++-.+.+++ ++... -+.....+..+. .....
T Consensus 158 ~~~g~~vlV~G~g~vG~~~~~~a~~~-G~~~v~~~~~~~~~~~~~~~-~Ga~~-------~i~~~~~~~~~~~~~~~~~~ 228 (347)
T PRK10309 158 GCEGKNVIIIGAGTIGLLAIQCAVAL-GAKSVTAIDINSEKLALAKS-LGAMQ-------TFNSREMSAPQIQSVLRELR 228 (347)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHc-CCCeEEEECCCHHHHHHHHH-cCCce-------EecCcccCHHHHHHHhcCCC
Confidence 4467899999875 334445555544 564 7999999999888865 44211 011111111111 23346
Q ss_pred eeEEEEcCCCCCCCCCCCCcHHHHHHHHhhccCCcEEEEEe
Q 035593 150 FSGILVDLFSKGSLLSELEDPNTWEKLRQCLRKGGRIMVNV 190 (269)
Q Consensus 150 yD~I~~d~~~~~~~~~~l~~~e~~~~~~~~L~pgG~l~~~~ 190 (269)
+|.+++|+... ...+..+.+.|+++|.+++.-
T Consensus 229 ~d~~v~d~~G~---------~~~~~~~~~~l~~~G~iv~~G 260 (347)
T PRK10309 229 FDQLILETAGV---------PQTVELAIEIAGPRAQLALVG 260 (347)
T ss_pred CCeEEEECCCC---------HHHHHHHHHHhhcCCEEEEEc
Confidence 88555665432 457888889999999987653
No 310
>PRK11524 putative methyltransferase; Provisional
Probab=94.25 E-value=0.1 Score=46.06 Aligned_cols=59 Identities=15% Similarity=0.116 Sum_probs=41.8
Q ss_pred CcEEEEEcccccc---ccCCCeeEEEEcCCCCC--C---CCCCC-------CcHHHHHHHHhhccCCcEEEEEe
Q 035593 132 DRLFVYVGNALKA---SLKDGFSGILVDLFSKG--S---LLSEL-------EDPNTWEKLRQCLRKGGRIMVNV 190 (269)
Q Consensus 132 ~rv~~~~~D~~~~---~~~~~yD~I~~d~~~~~--~---~~~~l-------~~~e~~~~~~~~L~pgG~l~~~~ 190 (269)
...+++++|+.++ ...+++|+|++|.+-.. . ..... ...+++..+.++|||||.+++.+
T Consensus 7 ~~~~i~~gD~~~~l~~l~~~siDlIitDPPY~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~rvLK~~G~i~i~~ 80 (284)
T PRK11524 7 EAKTIIHGDALTELKKIPSESVDLIFADPPYNIGKNFDGLIEAWKEDLFIDWLYEWIDECHRVLKKQGTMYIMN 80 (284)
T ss_pred CCCEEEeccHHHHHHhcccCcccEEEECCCcccccccccccccccHHHHHHHHHHHHHHHHHHhCCCcEEEEEc
Confidence 4568999999986 35678999999954211 0 00000 11478899999999999999865
No 311
>PF07279 DUF1442: Protein of unknown function (DUF1442); InterPro: IPR009902 This family consists of several hypothetical Arabidopsis thaliana proteins of around 225 residues in length. The function of this family is unknown.
Probab=94.14 E-value=0.6 Score=39.35 Aligned_cols=104 Identities=14% Similarity=0.023 Sum_probs=66.1
Q ss_pred CCCcEEEEcCccc----HHHHHHHHHCCCceEEEEECChHHHHHHHHhcCccccccCCCCcEEEEEccccc-c-ccCCCe
Q 035593 77 PPGPIGILGFGAG----SAARLILDLYPEAVIHGWELDPSVIKVAREFFALEKLEKSYPDRLFVYVGNALK-A-SLKDGF 150 (269)
Q Consensus 77 ~~~~VL~iG~G~G----~~~~~l~~~~p~~~v~~vEidp~~~~~a~~~~~~~~~~~~~~~rv~~~~~D~~~-~-~~~~~y 150 (269)
+.+.++++.+++| +++...+.+.-+.++++|-.+++-....++.++-.. ..+.++++.++..+ . ..-...
T Consensus 41 nAkliVe~~s~g~~~~ttiaLaaAAr~TgGR~vCIvp~~~~~~~~~~~l~~~~----~~~~vEfvvg~~~e~~~~~~~~i 116 (218)
T PF07279_consen 41 NAKLIVEAWSSGGAISTTIALAAAARQTGGRHVCIVPDEQSLSEYKKALGEAG----LSDVVEFVVGEAPEEVMPGLKGI 116 (218)
T ss_pred cceEEEEEecCCCchHhHHHHHHHHHhcCCeEEEEcCChhhHHHHHHHHhhcc----ccccceEEecCCHHHHHhhccCC
Confidence 4677888876654 344555555568899999999988877787764221 12457999998654 4 445689
Q ss_pred eEEEEcCCCCCCCCCCCCcHHHHHHHHhhccCCcEEEE--EecC
Q 035593 151 SGILVDLFSKGSLLSELEDPNTWEKLRQCLRKGGRIMV--NVGG 192 (269)
Q Consensus 151 D~I~~d~~~~~~~~~~l~~~e~~~~~~~~L~pgG~l~~--~~~~ 192 (269)
|++++|+-..+ +..++|+.++ +.|.|.+++ |.++
T Consensus 117 DF~vVDc~~~d------~~~~vl~~~~--~~~~GaVVV~~Na~~ 152 (218)
T PF07279_consen 117 DFVVVDCKRED------FAARVLRAAK--LSPRGAVVVCYNAFS 152 (218)
T ss_pred CEEEEeCCchh------HHHHHHHHhc--cCCCceEEEEecccc
Confidence 99999975321 0124444433 556676554 5544
No 312
>PLN03154 putative allyl alcohol dehydrogenase; Provisional
Probab=94.05 E-value=0.46 Score=43.01 Aligned_cols=96 Identities=10% Similarity=0.082 Sum_probs=62.9
Q ss_pred CCCCCcEEEEcC--cccHHHHHHHHHCCCceEEEEECChHHHHHHHHhcCccccccCCCCcEEEEEc-ccccc---ccCC
Q 035593 75 ILPPGPIGILGF--GAGSAARLILDLYPEAVIHGWELDPSVIKVAREFFALEKLEKSYPDRLFVYVG-NALKA---SLKD 148 (269)
Q Consensus 75 l~~~~~VL~iG~--G~G~~~~~l~~~~p~~~v~~vEidp~~~~~a~~~~~~~~~~~~~~~rv~~~~~-D~~~~---~~~~ 148 (269)
+.+..+||+.|+ |.|.++..+++.. +++|++++.+++-.+.+++.++... -+..... |..+. ...+
T Consensus 156 ~~~g~~VlV~GaaG~vG~~aiqlAk~~-G~~Vi~~~~~~~k~~~~~~~lGa~~-------vi~~~~~~~~~~~i~~~~~~ 227 (348)
T PLN03154 156 PKKGDSVFVSAASGAVGQLVGQLAKLH-GCYVVGSAGSSQKVDLLKNKLGFDE-------AFNYKEEPDLDAALKRYFPE 227 (348)
T ss_pred CCCCCEEEEecCccHHHHHHHHHHHHc-CCEEEEEcCCHHHHHHHHHhcCCCE-------EEECCCcccHHHHHHHHCCC
Confidence 456889999997 3667777777754 7789999999988888875555321 0111111 22111 1234
Q ss_pred CeeEEEEcCCCCCCCCCCCCcHHHHHHHHhhccCCcEEEEE
Q 035593 149 GFSGILVDLFSKGSLLSELEDPNTWEKLRQCLRKGGRIMVN 189 (269)
Q Consensus 149 ~yD~I~~d~~~~~~~~~~l~~~e~~~~~~~~L~pgG~l~~~ 189 (269)
.+|+|+ |... ...+..+.+.|+++|.+++.
T Consensus 228 gvD~v~-d~vG----------~~~~~~~~~~l~~~G~iv~~ 257 (348)
T PLN03154 228 GIDIYF-DNVG----------GDMLDAALLNMKIHGRIAVC 257 (348)
T ss_pred CcEEEE-ECCC----------HHHHHHHHHHhccCCEEEEE
Confidence 699987 4322 24678888999999998864
No 313
>PF01262 AlaDh_PNT_C: Alanine dehydrogenase/PNT, C-terminal domain; InterPro: IPR007698 Alanine dehydrogenases (1.4.1.1 from EC) and pyridine nucleotide transhydrogenase (1.6.1.1 from EC) have been shown to share regions of similarity []. Alanine dehydrogenase catalyzes the NAD-dependent reversible reductive amination of pyruvate into alanine. Pyridine nucleotide transhydrogenase catalyzes the reduction of NADP+ to NADPH with the concomitant oxidation of NADH to NAD+. This enzyme is located in the plasma membrane of prokaryotes and in the inner membrane of the mitochondria of eukaryotes. The transhydrogenation between NADH and NADP is coupled with the translocation of a proton across the membrane. In prokaryotes the enzyme is composed of two different subunits, an alpha chain (gene pntA) and a beta chain (gene pntB), while in eukaryotes it is a single chain protein. The sequence of alanine dehydrogenase from several bacterial species are related with those of the alpha subunit of bacterial pyridine nucleotide transhydrogenase and of the N-terminal half of the eukaryotic enzyme. The two most conserved regions correspond respectively to the N-terminal extremity of these proteins and to a central glycine-rich region which is part of the NAD(H)-binding site. This is a C-terminal domain of alanine dehydrogenases (1.4.1.1 from EC). This domain is also found in the lysine 2-oxoglutarate reductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1KOL_A 2EEZ_F 1L7E_C 1PTJ_B 1NM5_A 1HZZ_B 1U2G_B 2FSV_A 2FR8_A 1U2D_A ....
Probab=93.92 E-value=0.064 Score=43.50 Aligned_cols=106 Identities=14% Similarity=0.132 Sum_probs=57.8
Q ss_pred CCCCcEEEEcCc-ccHHHHHHHHHCCCceEEEEECChHHHHHHHHhcCccc-ccc-CCCCcEEEEEcccccc--------
Q 035593 76 LPPGPIGILGFG-AGSAARLILDLYPEAVIHGWELDPSVIKVAREFFALEK-LEK-SYPDRLFVYVGNALKA-------- 144 (269)
Q Consensus 76 ~~~~~VL~iG~G-~G~~~~~l~~~~p~~~v~~vEidp~~~~~a~~~~~~~~-~~~-~~~~rv~~~~~D~~~~-------- 144 (269)
.+|.+|+.+|.| .|..+..++... +++++..|..++..+..+..+...- ... ....+-. .|-.++
T Consensus 18 ~~p~~vvv~G~G~vg~gA~~~~~~l-Ga~v~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~---~~~~~~~~~~~~~~ 93 (168)
T PF01262_consen 18 VPPAKVVVTGAGRVGQGAAEIAKGL-GAEVVVPDERPERLRQLESLGAYFIEVDYEDHLERKD---FDKADYYEHPESYE 93 (168)
T ss_dssp E-T-EEEEESTSHHHHHHHHHHHHT-T-EEEEEESSHHHHHHHHHTTTEESEETTTTTTTSB----CCHHHCHHHCCHHH
T ss_pred CCCeEEEEECCCHHHHHHHHHHhHC-CCEEEeccCCHHHHHhhhcccCceEEEcccccccccc---cchhhhhHHHHHhH
Confidence 368999999998 566666777654 7899999999998887766543110 000 0000001 111111
Q ss_pred ----ccCCCeeEEEEcCCCCCCCCCCCCcHHHHHHHHhhccCCcEEEEEe
Q 035593 145 ----SLKDGFSGILVDLFSKGSLLSELEDPNTWEKLRQCLRKGGRIMVNV 190 (269)
Q Consensus 145 ----~~~~~yD~I~~d~~~~~~~~~~l~~~e~~~~~~~~L~pgG~l~~~~ 190 (269)
..-..+|+|+..+.-.....|.+.+.+.++. |+| |.+++.+
T Consensus 94 ~~f~~~i~~~d~vI~~~~~~~~~~P~lvt~~~~~~----m~~-gsvIvDi 138 (168)
T PF01262_consen 94 SNFAEFIAPADIVIGNGLYWGKRAPRLVTEEMVKS----MKP-GSVIVDI 138 (168)
T ss_dssp HHHHHHHHH-SEEEEHHHBTTSS---SBEHHHHHT----SST-TEEEEET
T ss_pred HHHHHHHhhCcEEeeecccCCCCCCEEEEhHHhhc----cCC-CceEEEE
Confidence 1235689999765433345667777766554 555 6666666
No 314
>cd08281 liver_ADH_like1 Zinc-dependent alcohol dehydrogenases (ADH) and class III ADG (AKA formaldehyde dehydrogenase). NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. This group contains members identified as zinc dependent alcohol dehydrogenases (ADH), and class III ADG (aka formaldehyde dehydrogenase, FDH). Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. Class III ADH are also know as glutathione-dependent formaldehyde dehyd
Probab=93.80 E-value=0.51 Score=43.03 Aligned_cols=97 Identities=19% Similarity=0.237 Sum_probs=60.4
Q ss_pred CCCCCcEEEEcCc-ccHHHHHHHHHCCCc-eEEEEECChHHHHHHHHhcCccccccCCCCcEEEEEccccc-c--ccCCC
Q 035593 75 ILPPGPIGILGFG-AGSAARLILDLYPEA-VIHGWELDPSVIKVAREFFALEKLEKSYPDRLFVYVGNALK-A--SLKDG 149 (269)
Q Consensus 75 l~~~~~VL~iG~G-~G~~~~~l~~~~p~~-~v~~vEidp~~~~~a~~~~~~~~~~~~~~~rv~~~~~D~~~-~--~~~~~ 149 (269)
+.+..+||++|+| .|.++..+++.. ++ +|++++.+++-.+.+++ ++... -+.....|..+ . ...+.
T Consensus 189 i~~g~~VlV~G~G~vG~~a~~lak~~-G~~~Vi~~~~~~~r~~~a~~-~Ga~~-------~i~~~~~~~~~~i~~~~~~g 259 (371)
T cd08281 189 VRPGQSVAVVGLGGVGLSALLGAVAA-GASQVVAVDLNEDKLALARE-LGATA-------TVNAGDPNAVEQVRELTGGG 259 (371)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHc-CCCcEEEEcCCHHHHHHHHH-cCCce-------EeCCCchhHHHHHHHHhCCC
Confidence 4567899999875 345556666654 56 79999999999999876 34211 01111112111 1 12236
Q ss_pred eeEEEEcCCCCCCCCCCCCcHHHHHHHHhhccCCcEEEEEe
Q 035593 150 FSGILVDLFSKGSLLSELEDPNTWEKLRQCLRKGGRIMVNV 190 (269)
Q Consensus 150 yD~I~~d~~~~~~~~~~l~~~e~~~~~~~~L~pgG~l~~~~ 190 (269)
+|+|+ |... ..+.++.+.+.|+++|.++..-
T Consensus 260 ~d~vi-d~~G---------~~~~~~~~~~~l~~~G~iv~~G 290 (371)
T cd08281 260 VDYAF-EMAG---------SVPALETAYEITRRGGTTVTAG 290 (371)
T ss_pred CCEEE-ECCC---------ChHHHHHHHHHHhcCCEEEEEc
Confidence 89987 3322 1357788888999999987643
No 315
>cd08294 leukotriene_B4_DH_like 13-PGR is a bifunctional enzyme with delta-13 15-prostaglandin reductase and leukotriene B4 12 hydroxydehydrogenase activity. Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto- 13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of ac
Probab=93.79 E-value=1.1 Score=39.65 Aligned_cols=95 Identities=13% Similarity=0.096 Sum_probs=61.7
Q ss_pred CCCCCcEEEEcC--cccHHHHHHHHHCCCceEEEEECChHHHHHHHHhcCccccccCCCCcEEEEEccccc-c--ccCCC
Q 035593 75 ILPPGPIGILGF--GAGSAARLILDLYPEAVIHGWELDPSVIKVAREFFALEKLEKSYPDRLFVYVGNALK-A--SLKDG 149 (269)
Q Consensus 75 l~~~~~VL~iG~--G~G~~~~~l~~~~p~~~v~~vEidp~~~~~a~~~~~~~~~~~~~~~rv~~~~~D~~~-~--~~~~~ 149 (269)
+.+..+||+.|+ |.|..+..+++. .+++|+++..+++-.+.+++ ++... -+.....|..+ . ...+.
T Consensus 141 ~~~g~~vlI~ga~g~vG~~aiqlA~~-~G~~vi~~~~s~~~~~~l~~-~Ga~~-------vi~~~~~~~~~~v~~~~~~g 211 (329)
T cd08294 141 PKAGETVVVNGAAGAVGSLVGQIAKI-KGCKVIGCAGSDDKVAWLKE-LGFDA-------VFNYKTVSLEEALKEAAPDG 211 (329)
T ss_pred CCCCCEEEEecCccHHHHHHHHHHHH-cCCEEEEEeCCHHHHHHHHH-cCCCE-------EEeCCCccHHHHHHHHCCCC
Confidence 556789999984 466677777775 47789999999998888877 44321 01111112111 1 12356
Q ss_pred eeEEEEcCCCCCCCCCCCCcHHHHHHHHhhccCCcEEEEE
Q 035593 150 FSGILVDLFSKGSLLSELEDPNTWEKLRQCLRKGGRIMVN 189 (269)
Q Consensus 150 yD~I~~d~~~~~~~~~~l~~~e~~~~~~~~L~pgG~l~~~ 189 (269)
+|+|+ |... .+.++.+.+.|+++|.++..
T Consensus 212 vd~vl-d~~g----------~~~~~~~~~~l~~~G~iv~~ 240 (329)
T cd08294 212 IDCYF-DNVG----------GEFSSTVLSHMNDFGRVAVC 240 (329)
T ss_pred cEEEE-ECCC----------HHHHHHHHHhhccCCEEEEE
Confidence 99887 4321 25678889999999998753
No 316
>cd05188 MDR Medium chain reductase/dehydrogenase (MDR)/zinc-dependent alcohol dehydrogenase-like family. The medium chain reductase/dehydrogenases (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH) , quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydro
Probab=93.39 E-value=0.74 Score=39.10 Aligned_cols=98 Identities=20% Similarity=0.233 Sum_probs=61.7
Q ss_pred CCCCCcEEEEcCcc-cHHHHHHHHHCCCceEEEEECChHHHHHHHHhcCccccccCCCCcEEEEEccccc---cccCCCe
Q 035593 75 ILPPGPIGILGFGA-GSAARLILDLYPEAVIHGWELDPSVIKVAREFFALEKLEKSYPDRLFVYVGNALK---ASLKDGF 150 (269)
Q Consensus 75 l~~~~~VL~iG~G~-G~~~~~l~~~~p~~~v~~vEidp~~~~~a~~~~~~~~~~~~~~~rv~~~~~D~~~---~~~~~~y 150 (269)
+.+..+||+.|+|+ |..+..+++.. +.+|++++.+++..+.+++. +... -+.....+... ....+.+
T Consensus 132 ~~~~~~vli~g~~~~G~~~~~~a~~~-g~~v~~~~~~~~~~~~~~~~-g~~~-------~~~~~~~~~~~~~~~~~~~~~ 202 (271)
T cd05188 132 LKPGDTVLVLGAGGVGLLAAQLAKAA-GARVIVTDRSDEKLELAKEL-GADH-------VIDYKEEDLEEELRLTGGGGA 202 (271)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHc-CCeEEEEcCCHHHHHHHHHh-CCce-------eccCCcCCHHHHHHHhcCCCC
Confidence 35688999999986 55666666643 68999999999888887654 2110 01000001000 1224579
Q ss_pred eEEEEcCCCCCCCCCCCCcHHHHHHHHhhccCCcEEEEEec
Q 035593 151 SGILVDLFSKGSLLSELEDPNTWEKLRQCLRKGGRIMVNVG 191 (269)
Q Consensus 151 D~I~~d~~~~~~~~~~l~~~e~~~~~~~~L~pgG~l~~~~~ 191 (269)
|+|+.... ....+..+.+.|+++|.++....
T Consensus 203 d~vi~~~~----------~~~~~~~~~~~l~~~G~~v~~~~ 233 (271)
T cd05188 203 DVVIDAVG----------GPETLAQALRLLRPGGRIVVVGG 233 (271)
T ss_pred CEEEECCC----------CHHHHHHHHHhcccCCEEEEEcc
Confidence 99985322 12567888889999999886543
No 317
>KOG1227 consensus Putative methyltransferase [General function prediction only]
Probab=93.37 E-value=0.032 Score=49.13 Aligned_cols=99 Identities=14% Similarity=0.170 Sum_probs=75.3
Q ss_pred CCcEEEEcCcccHHHH-HHHHHCCCceEEEEECChHHHHHHHHhcCccccccCCCCcEEEEEccccccccCCCeeEEEEc
Q 035593 78 PGPIGILGFGAGSAAR-LILDLYPEAVIHGWELDPSVIKVAREFFALEKLEKSYPDRLFVYVGNALKASLKDGFSGILVD 156 (269)
Q Consensus 78 ~~~VL~iG~G~G~~~~-~l~~~~p~~~v~~vEidp~~~~~a~~~~~~~~~~~~~~~rv~~~~~D~~~~~~~~~yD~I~~d 156 (269)
...|.|+=+|-|..+. ++.+ .....|.++|.||..++..|+....+. ...|..++.+|-|........|-|.+.
T Consensus 195 ~eviVDLYAGIGYFTlpflV~-agAk~V~A~EwNp~svEaLrR~~~~N~----V~~r~~i~~gd~R~~~~~~~AdrVnLG 269 (351)
T KOG1227|consen 195 GEVIVDLYAGIGYFTLPFLVT-AGAKTVFACEWNPWSVEALRRNAEANN----VMDRCRITEGDNRNPKPRLRADRVNLG 269 (351)
T ss_pred cchhhhhhcccceEEeehhhc-cCccEEEEEecCHHHHHHHHHHHHhcc----hHHHHHhhhccccccCccccchheeec
Confidence 5788999999999988 6555 356699999999999999999876553 356888999998887777888999876
Q ss_pred CCCCCCCCCCCCcHHHHHHHHhhccCC-c-EEEEE
Q 035593 157 LFSKGSLLSELEDPNTWEKLRQCLRKG-G-RIMVN 189 (269)
Q Consensus 157 ~~~~~~~~~~l~~~e~~~~~~~~L~pg-G-~l~~~ 189 (269)
+-.+ +++-+-.+.++|+|. | ++-++
T Consensus 270 LlPS--------se~~W~~A~k~Lk~eggsilHIH 296 (351)
T KOG1227|consen 270 LLPS--------SEQGWPTAIKALKPEGGSILHIH 296 (351)
T ss_pred cccc--------cccchHHHHHHhhhcCCcEEEEe
Confidence 5433 345556677788884 4 55554
No 318
>PF02636 Methyltransf_28: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR003788 This entry describes proteins of unknown function.; PDB: 4F3N_A 1ZKD_B.
Probab=93.36 E-value=0.081 Score=45.82 Aligned_cols=45 Identities=29% Similarity=0.318 Sum_probs=35.9
Q ss_pred CCcEEEEcCcccHHHHHHHHHCC--------CceEEEEECChHHHHHHHHhcC
Q 035593 78 PGPIGILGFGAGSAARLILDLYP--------EAVIHGWELDPSVIKVAREFFA 122 (269)
Q Consensus 78 ~~~VL~iG~G~G~~~~~l~~~~p--------~~~v~~vEidp~~~~~a~~~~~ 122 (269)
+-+|+++|.|.|.++..+++... ..+++.||++|.+.+.-++.+.
T Consensus 19 ~~~ivE~GaG~G~La~diL~~l~~~~p~~~~~~~y~ivE~Sp~L~~~Q~~~L~ 71 (252)
T PF02636_consen 19 PLRIVEIGAGRGTLARDILRYLRKFSPEVYKRLRYHIVEISPYLRERQKERLS 71 (252)
T ss_dssp -EEEEEES-TTSHHHHHHHHHHCCTTHHHHTTCEEEEE-TTCCCHHHHHHHCC
T ss_pred CcEEEEECCCchHHHHHHHHHHHHhChhhhhcceEEEEcCCHHHHHHHHHHhh
Confidence 56999999999999998887532 3599999999999998888764
No 319
>PLN02256 arogenate dehydrogenase
Probab=93.24 E-value=1.9 Score=38.54 Aligned_cols=105 Identities=16% Similarity=0.156 Sum_probs=62.0
Q ss_pred CCcEEEEcCc--ccHHHHHHHHHCCCceEEEEECChHHHHHHHHhcCccccccCCCCcEEEEEccccccccCCCeeEEEE
Q 035593 78 PGPIGILGFG--AGSAARLILDLYPEAVIHGWELDPSVIKVAREFFALEKLEKSYPDRLFVYVGNALKASLKDGFSGILV 155 (269)
Q Consensus 78 ~~~VL~iG~G--~G~~~~~l~~~~p~~~v~~vEidp~~~~~a~~~~~~~~~~~~~~~rv~~~~~D~~~~~~~~~yD~I~~ 155 (269)
..+|..||+| +|.++..+.+ .+.+|++++.++. .+.+++ ++ +.. ..|..+.. ....|+|++
T Consensus 36 ~~kI~IIG~G~mG~slA~~L~~--~G~~V~~~d~~~~-~~~a~~-~g-----------v~~-~~~~~e~~-~~~aDvVil 98 (304)
T PLN02256 36 KLKIGIVGFGNFGQFLAKTFVK--QGHTVLATSRSDY-SDIAAE-LG-----------VSF-FRDPDDFC-EEHPDVVLL 98 (304)
T ss_pred CCEEEEEeeCHHHHHHHHHHHh--CCCEEEEEECccH-HHHHHH-cC-----------Cee-eCCHHHHh-hCCCCEEEE
Confidence 5689999988 5566666655 3568999999874 344433 22 111 12222211 235799998
Q ss_pred cCCCCCCCCCCCCcHHHHHHH-HhhccCCcEEEEEecCCCccccccccchhHHHHHHHHHHHHHhcC
Q 035593 156 DLFSKGSLLSELEDPNTWEKL-RQCLRKGGRIMVNVGGSCVEAEDSRRDGKVVMEATLKAMHKVFGK 221 (269)
Q Consensus 156 d~~~~~~~~~~l~~~e~~~~~-~~~L~pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~F~~ 221 (269)
..... ...++++++ ...++++ .+++++.+. ....++.+++.++.
T Consensus 99 avp~~-------~~~~vl~~l~~~~l~~~-~iviDv~Sv--------------K~~~~~~~~~~l~~ 143 (304)
T PLN02256 99 CTSIL-------STEAVLRSLPLQRLKRS-TLFVDVLSV--------------KEFPKNLLLQVLPE 143 (304)
T ss_pred ecCHH-------HHHHHHHhhhhhccCCC-CEEEecCCc--------------hHHHHHHHHHhCCC
Confidence 54321 246777777 5567775 466777653 12456667777754
No 320
>PF10354 DUF2431: Domain of unknown function (DUF2431); InterPro: IPR019446 This entry represents the N-terminal domain of a family of proteins whose function is not known.
Probab=93.20 E-value=0.54 Score=38.14 Aligned_cols=107 Identities=14% Similarity=0.107 Sum_probs=66.6
Q ss_pred EEEcCcccHHHHHHHHHCC-CceE--EEEECChHHHHHHH---HhcCccccccCCCCcEEEE-Ecccccc-----ccCCC
Q 035593 82 GILGFGAGSAARLILDLYP-EAVI--HGWELDPSVIKVAR---EFFALEKLEKSYPDRLFVY-VGNALKA-----SLKDG 149 (269)
Q Consensus 82 L~iG~G~G~~~~~l~~~~p-~~~v--~~vEidp~~~~~a~---~~~~~~~~~~~~~~rv~~~-~~D~~~~-----~~~~~ 149 (269)
|.||=|.-+.+..|++++. +.+| |..|...++.+... .+.. . .....++++ --|+... ....+
T Consensus 1 LlvGeGdfSFs~sL~~~~~~~~~l~ATs~ds~~~l~~kY~~~~~nl~--~---L~~~g~~V~~~VDat~l~~~~~~~~~~ 75 (166)
T PF10354_consen 1 LLVGEGDFSFSLSLARAFGSATNLVATSYDSEEELLQKYPDAEENLE--E---LRELGVTVLHGVDATKLHKHFRLKNQR 75 (166)
T ss_pred CeeeccchHHHHHHHHHcCCCCeEEEeecCchHHHHHhcccHHHHHH--H---HhhcCCccccCCCCCcccccccccCCc
Confidence 5789999999999999876 4444 45555554444332 1111 1 012334443 3466665 24678
Q ss_pred eeEEEEcCCCCCCCC---------CCCCcHHHHHHHHhhccCCcEEEEEecCC
Q 035593 150 FSGILVDLFSKGSLL---------SELEDPNTWEKLRQCLRKGGRIMVNVGGS 193 (269)
Q Consensus 150 yD~I~~d~~~~~~~~---------~~l~~~e~~~~~~~~L~pgG~l~~~~~~~ 193 (269)
||.|+.+.+...... .......||+.+...|+++|.+.+.....
T Consensus 76 FDrIiFNFPH~G~~~~~~~~~i~~nr~Ll~~Ff~Sa~~~L~~~G~IhVTl~~~ 128 (166)
T PF10354_consen 76 FDRIIFNFPHVGGGSEDGKRNIRLNRELLRGFFKSASQLLKPDGEIHVTLKDG 128 (166)
T ss_pred CCEEEEeCCCCCCCccchhHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCCC
Confidence 999998765442110 01123589999999999999998877554
No 321
>TIGR02825 B4_12hDH leukotriene B4 12-hydroxydehydrogenase/15-oxo-prostaglandin 13-reductase. Leukotriene B4 12-hydroxydehydrogenase is an NADP-dependent enzyme of arachidonic acid metabolism, responsible for converting leukotriene B4 to the much less active metabolite 12-oxo-leukotriene B4. The BRENDA database lists leukotriene B4 12-hydroxydehydrogenase as one of the synonyms of 2-alkenal reductase (EC 1.3.1.74), while 1.3.1.48 is 15-oxoprostaglandin 13-reductase.
Probab=93.19 E-value=1.6 Score=38.81 Aligned_cols=95 Identities=13% Similarity=0.114 Sum_probs=61.3
Q ss_pred CCCCCcEEEEcC--cccHHHHHHHHHCCCceEEEEECChHHHHHHHHhcCccccccCCCCcEEEEEc-ccccc---ccCC
Q 035593 75 ILPPGPIGILGF--GAGSAARLILDLYPEAVIHGWELDPSVIKVAREFFALEKLEKSYPDRLFVYVG-NALKA---SLKD 148 (269)
Q Consensus 75 l~~~~~VL~iG~--G~G~~~~~l~~~~p~~~v~~vEidp~~~~~a~~~~~~~~~~~~~~~rv~~~~~-D~~~~---~~~~ 148 (269)
+.+..+||..|+ |.|..+..+++. .+.+|+++..+++-.+.+++ ++... -+..... +..+. ...+
T Consensus 136 ~~~g~~VLI~ga~g~vG~~aiqlAk~-~G~~Vi~~~~s~~~~~~~~~-lGa~~-------vi~~~~~~~~~~~~~~~~~~ 206 (325)
T TIGR02825 136 VKGGETVMVNAAAGAVGSVVGQIAKL-KGCKVVGAAGSDEKVAYLKK-LGFDV-------AFNYKTVKSLEETLKKASPD 206 (325)
T ss_pred CCCCCEEEEeCCccHHHHHHHHHHHH-cCCEEEEEeCCHHHHHHHHH-cCCCE-------EEeccccccHHHHHHHhCCC
Confidence 456789999984 467777777775 47789999999988888865 44311 0111000 11111 2234
Q ss_pred CeeEEEEcCCCCCCCCCCCCcHHHHHHHHhhccCCcEEEEE
Q 035593 149 GFSGILVDLFSKGSLLSELEDPNTWEKLRQCLRKGGRIMVN 189 (269)
Q Consensus 149 ~yD~I~~d~~~~~~~~~~l~~~e~~~~~~~~L~pgG~l~~~ 189 (269)
.+|+|+ |... .+.+..+.++|+++|.++..
T Consensus 207 gvdvv~-d~~G----------~~~~~~~~~~l~~~G~iv~~ 236 (325)
T TIGR02825 207 GYDCYF-DNVG----------GEFSNTVIGQMKKFGRIAIC 236 (325)
T ss_pred CeEEEE-ECCC----------HHHHHHHHHHhCcCcEEEEe
Confidence 699987 4332 23568888999999999864
No 322
>PRK03562 glutathione-regulated potassium-efflux system protein KefC; Provisional
Probab=93.14 E-value=0.7 Score=45.49 Aligned_cols=69 Identities=20% Similarity=0.263 Sum_probs=48.9
Q ss_pred CCcEEEEcCc-ccHHHHHHHHHCCCceEEEEECChHHHHHHHHhcCccccccCCCCcEEEEEcccccc-----ccCCCee
Q 035593 78 PGPIGILGFG-AGSAARLILDLYPEAVIHGWELDPSVIKVAREFFALEKLEKSYPDRLFVYVGNALKA-----SLKDGFS 151 (269)
Q Consensus 78 ~~~VL~iG~G-~G~~~~~l~~~~p~~~v~~vEidp~~~~~a~~~~~~~~~~~~~~~rv~~~~~D~~~~-----~~~~~yD 151 (269)
..+|+.+|+| .|......++. .+.+++++|.|++.++.+++. ..+++.||+.+. ..-++.|
T Consensus 400 ~~~vII~G~Gr~G~~va~~L~~-~g~~vvvID~d~~~v~~~~~~------------g~~v~~GDat~~~~L~~agi~~A~ 466 (621)
T PRK03562 400 QPRVIIAGFGRFGQIVGRLLLS-SGVKMTVLDHDPDHIETLRKF------------GMKVFYGDATRMDLLESAGAAKAE 466 (621)
T ss_pred cCcEEEEecChHHHHHHHHHHh-CCCCEEEEECCHHHHHHHHhc------------CCeEEEEeCCCHHHHHhcCCCcCC
Confidence 4689999988 34433333332 467999999999999988763 257899999876 2345888
Q ss_pred EEEEcCCC
Q 035593 152 GILVDLFS 159 (269)
Q Consensus 152 ~I~~d~~~ 159 (269)
++++...+
T Consensus 467 ~vvv~~~d 474 (621)
T PRK03562 467 VLINAIDD 474 (621)
T ss_pred EEEEEeCC
Confidence 88875443
No 323
>cd08239 THR_DH_like L-threonine dehydrogenase (TDH)-like. MDR/AHD-like proteins, including a protein annotated as a threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine via NAD(H)-dependent oxidation. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Zinc-dependent ADHs are medium chain dehydrogenase/reductase type proteins (MDRs) and have a NAD(P)(H)-binding domain in a Rossmann fold of an beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. In addition to alcohol dehydrogenases, this group includes quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc at
Probab=92.98 E-value=0.69 Score=41.34 Aligned_cols=97 Identities=12% Similarity=0.170 Sum_probs=59.3
Q ss_pred CCCCCcEEEEcCc-ccHHHHHHHHHCCCce-EEEEECChHHHHHHHHhcCccccccCCCCcEEEEEcccccc---ccCCC
Q 035593 75 ILPPGPIGILGFG-AGSAARLILDLYPEAV-IHGWELDPSVIKVAREFFALEKLEKSYPDRLFVYVGNALKA---SLKDG 149 (269)
Q Consensus 75 l~~~~~VL~iG~G-~G~~~~~l~~~~p~~~-v~~vEidp~~~~~a~~~~~~~~~~~~~~~rv~~~~~D~~~~---~~~~~ 149 (269)
+.+..+||++|+| .|.++..+++.. +++ |++++.+++-.+.+++ ++... -+.....+.... .....
T Consensus 161 ~~~g~~vlV~G~G~vG~~~~~~ak~~-G~~~vi~~~~~~~~~~~~~~-~ga~~-------~i~~~~~~~~~~~~~~~~~~ 231 (339)
T cd08239 161 VSGRDTVLVVGAGPVGLGALMLARAL-GAEDVIGVDPSPERLELAKA-LGADF-------VINSGQDDVQEIRELTSGAG 231 (339)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHc-CCCEEEEECCCHHHHHHHHH-hCCCE-------EEcCCcchHHHHHHHhCCCC
Confidence 4568899999865 333444555543 566 9999999999888865 34211 011111111111 23347
Q ss_pred eeEEEEcCCCCCCCCCCCCcHHHHHHHHhhccCCcEEEEEe
Q 035593 150 FSGILVDLFSKGSLLSELEDPNTWEKLRQCLRKGGRIMVNV 190 (269)
Q Consensus 150 yD~I~~d~~~~~~~~~~l~~~e~~~~~~~~L~pgG~l~~~~ 190 (269)
+|+|+ |... ....+..+.+.|+++|.+++-.
T Consensus 232 ~d~vi-d~~g---------~~~~~~~~~~~l~~~G~~v~~g 262 (339)
T cd08239 232 ADVAI-ECSG---------NTAARRLALEAVRPWGRLVLVG 262 (339)
T ss_pred CCEEE-ECCC---------CHHHHHHHHHHhhcCCEEEEEc
Confidence 99997 3322 2456677788999999988643
No 324
>PLN02740 Alcohol dehydrogenase-like
Probab=92.94 E-value=0.97 Score=41.39 Aligned_cols=96 Identities=14% Similarity=0.158 Sum_probs=58.6
Q ss_pred CCCCCcEEEEcCc-ccHHHHHHHHHCCCc-eEEEEECChHHHHHHHHhcCccccccCCCCcEEEEE--ccccc-c--ccC
Q 035593 75 ILPPGPIGILGFG-AGSAARLILDLYPEA-VIHGWELDPSVIKVAREFFALEKLEKSYPDRLFVYV--GNALK-A--SLK 147 (269)
Q Consensus 75 l~~~~~VL~iG~G-~G~~~~~l~~~~p~~-~v~~vEidp~~~~~a~~~~~~~~~~~~~~~rv~~~~--~D~~~-~--~~~ 147 (269)
+.+..+||++|+| -|..+..+++.. ++ +|++++.+++-.+.+++ ++... -+.... .|..+ . ...
T Consensus 196 ~~~g~~VlV~G~G~vG~~a~q~ak~~-G~~~Vi~~~~~~~r~~~a~~-~Ga~~-------~i~~~~~~~~~~~~v~~~~~ 266 (381)
T PLN02740 196 VQAGSSVAIFGLGAVGLAVAEGARAR-GASKIIGVDINPEKFEKGKE-MGITD-------FINPKDSDKPVHERIREMTG 266 (381)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHC-CCCcEEEEcCChHHHHHHHH-cCCcE-------EEecccccchHHHHHHHHhC
Confidence 4567899999875 344445566654 55 79999999999999976 34211 111110 01111 1 112
Q ss_pred CCeeEEEEcCCCCCCCCCCCCcHHHHHHHHhhccCC-cEEEEE
Q 035593 148 DGFSGILVDLFSKGSLLSELEDPNTWEKLRQCLRKG-GRIMVN 189 (269)
Q Consensus 148 ~~yD~I~~d~~~~~~~~~~l~~~e~~~~~~~~L~pg-G~l~~~ 189 (269)
+.+|+|+ |... ..+.++...+.++++ |.+++-
T Consensus 267 ~g~dvvi-d~~G---------~~~~~~~a~~~~~~g~G~~v~~ 299 (381)
T PLN02740 267 GGVDYSF-ECAG---------NVEVLREAFLSTHDGWGLTVLL 299 (381)
T ss_pred CCCCEEE-ECCC---------ChHHHHHHHHhhhcCCCEEEEE
Confidence 2699887 4332 235777888889896 887663
No 325
>COG0604 Qor NADPH:quinone reductase and related Zn-dependent oxidoreductases [Energy production and conversion / General function prediction only]
Probab=92.92 E-value=0.95 Score=40.81 Aligned_cols=97 Identities=18% Similarity=0.197 Sum_probs=63.2
Q ss_pred CCCCCcEEEEcC--cccHHHHHHHHHCCCceEEEEECChHHHHHHHHhcCccccccCCCCcEEEEEcccccc----ccCC
Q 035593 75 ILPPGPIGILGF--GAGSAARLILDLYPEAVIHGWELDPSVIKVAREFFALEKLEKSYPDRLFVYVGNALKA----SLKD 148 (269)
Q Consensus 75 l~~~~~VL~iG~--G~G~~~~~l~~~~p~~~v~~vEidp~~~~~a~~~~~~~~~~~~~~~rv~~~~~D~~~~----~~~~ 148 (269)
+.+..+||..|+ |-|.++.+|+++... .+.++=-+++-.+.+++... +.-+.+...|..+- ...+
T Consensus 140 l~~g~~VLV~gaaGgVG~~aiQlAk~~G~-~~v~~~~s~~k~~~~~~lGA--------d~vi~y~~~~~~~~v~~~t~g~ 210 (326)
T COG0604 140 LKPGETVLVHGAAGGVGSAAIQLAKALGA-TVVAVVSSSEKLELLKELGA--------DHVINYREEDFVEQVRELTGGK 210 (326)
T ss_pred CCCCCEEEEecCCchHHHHHHHHHHHcCC-cEEEEecCHHHHHHHHhcCC--------CEEEcCCcccHHHHHHHHcCCC
Confidence 567899999995 456788888887644 55556566655556666532 11233333443222 3345
Q ss_pred CeeEEEEcCCCCCCCCCCCCcHHHHHHHHhhccCCcEEEEEec
Q 035593 149 GFSGILVDLFSKGSLLSELEDPNTWEKLRQCLRKGGRIMVNVG 191 (269)
Q Consensus 149 ~yD~I~~d~~~~~~~~~~l~~~e~~~~~~~~L~pgG~l~~~~~ 191 (269)
.+|+|+ |.. ..+.+....+.|+++|.++....
T Consensus 211 gvDvv~-D~v----------G~~~~~~~l~~l~~~G~lv~ig~ 242 (326)
T COG0604 211 GVDVVL-DTV----------GGDTFAASLAALAPGGRLVSIGA 242 (326)
T ss_pred CceEEE-ECC----------CHHHHHHHHHHhccCCEEEEEec
Confidence 799998 322 35788889999999999988654
No 326
>PF05711 TylF: Macrocin-O-methyltransferase (TylF); InterPro: IPR008884 This family consists of bacterial macrocin O-methyltransferase (TylF) proteins. TylF is responsible for the methylation of macrocin to produce tylosin. Tylosin is a macrolide antibiotic used in veterinary medicine to treat infections caused by Gram-positive bacteria and as an animal growth promoter in the Sus scrofa (Pig) industry. It is produced by several Streptomyces species. As with other macrolides, the antibiotic activity of tylosin is due to the inhibition of protein biosynthesis by a mechanism that involves the binding of tylosin to the ribosome, preventing the formation of the mRNA-aminoacyl-tRNA-ribosome complex [].; PDB: 3TOS_D 2WK1_A.
Probab=92.86 E-value=0.43 Score=41.35 Aligned_cols=108 Identities=21% Similarity=0.172 Sum_probs=63.3
Q ss_pred CCCcEEEEcCcccHHHHHHHH---HC--CCceEEEEECCh--------------------------HHHHHHHHhcCccc
Q 035593 77 PPGPIGILGFGAGSAARLILD---LY--PEAVIHGWELDP--------------------------SVIKVAREFFALEK 125 (269)
Q Consensus 77 ~~~~VL~iG~G~G~~~~~l~~---~~--p~~~v~~vEidp--------------------------~~~~~a~~~~~~~~ 125 (269)
-|..|+++|+--|..+..++. .+ ++.+|.+.|.=+ ...+..+++|....
T Consensus 74 vpGdivE~GV~rGgs~~~~~~~l~~~~~~~R~i~lfDSFeG~P~~~~~d~~~d~~~~~~~~~~~~~~s~e~V~~n~~~~g 153 (248)
T PF05711_consen 74 VPGDIVECGVWRGGSSILMRAVLEAYGNPDRRIYLFDSFEGFPEPDEEDYPADKGWEFHEYNGYLAVSLEEVRENFARYG 153 (248)
T ss_dssp S-SEEEEE--TTSHHHHHHHHHHHCTTTTS--EEEEE-SSSSSS--CCCTCCCCHCTCCGCCHHCTHHHHHHHHCCCCTT
T ss_pred CCeEEEEEeeCCCHHHHHHHHHHHHhCCCCCEEEEEeCCCCCCCCccccccccchhhhhhcccccccCHHHHHHHHHHcC
Confidence 488999999988876654432 22 345788887311 12344455543211
Q ss_pred cccCCCCcEEEEEcccccc---ccCCCeeEEEEcCCCCCCCCCCCCcHHHHHHHHhhccCCcEEEEEecCC
Q 035593 126 LEKSYPDRLFVYVGNALKA---SLKDGFSGILVDLFSKGSLLSELEDPNTWEKLRQCLRKGGRIMVNVGGS 193 (269)
Q Consensus 126 ~~~~~~~rv~~~~~D~~~~---~~~~~yD~I~~d~~~~~~~~~~l~~~e~~~~~~~~L~pgG~l~~~~~~~ 193 (269)
..+++++++.|...+. .+.+++-++-+|+.- +. .+.+.++.++.+|.|||++++.-++.
T Consensus 154 ---l~~~~v~~vkG~F~dTLp~~p~~~IAll~lD~Dl---Ye---sT~~aLe~lyprl~~GGiIi~DDY~~ 215 (248)
T PF05711_consen 154 ---LLDDNVRFVKGWFPDTLPDAPIERIALLHLDCDL---YE---STKDALEFLYPRLSPGGIIIFDDYGH 215 (248)
T ss_dssp ---TSSTTEEEEES-HHHHCCC-TT--EEEEEE---S---HH---HHHHHHHHHGGGEEEEEEEEESSTTT
T ss_pred ---CCcccEEEECCcchhhhccCCCccEEEEEEeccc---hH---HHHHHHHHHHhhcCCCeEEEEeCCCC
Confidence 1246899999998775 345677777776431 11 16799999999999999999987654
No 327
>PRK07417 arogenate dehydrogenase; Reviewed
Probab=92.77 E-value=0.48 Score=41.64 Aligned_cols=89 Identities=22% Similarity=0.140 Sum_probs=56.9
Q ss_pred cEEEEcCc--ccHHHHHHHHHCCCceEEEEECChHHHHHHHHhcCccccccCCCCcEEEEEccccccccCCCeeEEEEcC
Q 035593 80 PIGILGFG--AGSAARLILDLYPEAVIHGWELDPSVIKVAREFFALEKLEKSYPDRLFVYVGNALKASLKDGFSGILVDL 157 (269)
Q Consensus 80 ~VL~iG~G--~G~~~~~l~~~~p~~~v~~vEidp~~~~~a~~~~~~~~~~~~~~~rv~~~~~D~~~~~~~~~yD~I~~d~ 157 (269)
+|..||+| +|+++..+.+ .+.+|+++|.+++.++.+.+.-. +.....+. ..-...|+|++..
T Consensus 2 ~I~IIG~G~mG~sla~~L~~--~g~~V~~~d~~~~~~~~a~~~g~-----------~~~~~~~~---~~~~~aDlVilav 65 (279)
T PRK07417 2 KIGIVGLGLIGGSLGLDLRS--LGHTVYGVSRRESTCERAIERGL-----------VDEASTDL---SLLKDCDLVILAL 65 (279)
T ss_pred eEEEEeecHHHHHHHHHHHH--CCCEEEEEECCHHHHHHHHHCCC-----------cccccCCH---hHhcCCCEEEEcC
Confidence 68899988 4667777766 36789999999998887765411 11111111 1124679999864
Q ss_pred CCCCCCCCCCCcHHHHHHHHhhccCCcEEEEEecC
Q 035593 158 FSKGSLLSELEDPNTWEKLRQCLRKGGRIMVNVGG 192 (269)
Q Consensus 158 ~~~~~~~~~l~~~e~~~~~~~~L~pgG~l~~~~~~ 192 (269)
... ...++++.+...++++ .+++++.+
T Consensus 66 p~~-------~~~~~~~~l~~~l~~~-~ii~d~~S 92 (279)
T PRK07417 66 PIG-------LLLPPSEQLIPALPPE-AIVTDVGS 92 (279)
T ss_pred CHH-------HHHHHHHHHHHhCCCC-cEEEeCcc
Confidence 422 1356788888888775 55566654
No 328
>PF02153 PDH: Prephenate dehydrogenase; InterPro: IPR003099 Members of this family are prephenate dehydrogenases 1.3.1.12 from EC involved in tyrosine biosynthesis. ; GO: 0004665 prephenate dehydrogenase (NADP+) activity, 0008977 prephenate dehydrogenase activity, 0006571 tyrosine biosynthetic process, 0055114 oxidation-reduction process; PDB: 2F1K_B 2PV7_A 3DZB_B 3KTD_B 3B1F_A 2G5C_D 3GGP_C 3GGG_C 3GGO_D.
Probab=92.77 E-value=1.7 Score=37.80 Aligned_cols=100 Identities=15% Similarity=0.258 Sum_probs=59.4
Q ss_pred HHHHHHHHCCCceEEEEECChHHHHHHHHhcCccccccCCCCcEEEEEccccccccCCCeeEEEEcCCCCCCCCCCCCcH
Q 035593 91 AARLILDLYPEAVIHGWELDPSVIKVAREFFALEKLEKSYPDRLFVYVGNALKASLKDGFSGILVDLFSKGSLLSELEDP 170 (269)
Q Consensus 91 ~~~~l~~~~p~~~v~~vEidp~~~~~a~~~~~~~~~~~~~~~rv~~~~~D~~~~~~~~~yD~I~~d~~~~~~~~~~l~~~ 170 (269)
+++.|.+..+..+|+++|.++..++.|++. +... . ...+ ...-..+|+|++..+-. ...
T Consensus 1 ~A~aL~~~g~~~~v~g~d~~~~~~~~a~~~-g~~~---------~-~~~~---~~~~~~~DlvvlavP~~-------~~~ 59 (258)
T PF02153_consen 1 IALALRKAGPDVEVYGYDRDPETLEAALEL-GIID---------E-ASTD---IEAVEDADLVVLAVPVS-------AIE 59 (258)
T ss_dssp HHHHHHHTTTTSEEEEE-SSHHHHHHHHHT-TSSS---------E-EESH---HHHGGCCSEEEE-S-HH-------HHH
T ss_pred ChHHHHhCCCCeEEEEEeCCHHHHHHHHHC-CCee---------e-ccCC---HhHhcCCCEEEEcCCHH-------HHH
Confidence 467788876789999999999999998765 3210 1 1111 11124569999864322 157
Q ss_pred HHHHHHHhhccCCcEEEEEecCCCccccccccchhHHHHHHHHHHHHHhcCceEEE
Q 035593 171 NTWEKLRQCLRKGGRIMVNVGGSCVEAEDSRRDGKVVMEATLKAMHKVFGKKLYVL 226 (269)
Q Consensus 171 e~~~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~F~~~v~~~ 226 (269)
++++++...|++| .+++.+.+. ...+++.+++..+..+.++
T Consensus 60 ~~l~~~~~~~~~~-~iv~Dv~Sv--------------K~~~~~~~~~~~~~~~~~v 100 (258)
T PF02153_consen 60 DVLEEIAPYLKPG-AIVTDVGSV--------------KAPIVEAMERLLPEGVRFV 100 (258)
T ss_dssp HHHHHHHCGS-TT-SEEEE--S---------------CHHHHHHHHHHHTSSGEEE
T ss_pred HHHHHhhhhcCCC-cEEEEeCCC--------------CHHHHHHHHHhcCccccee
Confidence 8999999988876 555666554 1345666777765344444
No 329
>cd08293 PTGR2 Prostaglandin reductase. Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acid
Probab=92.68 E-value=1.1 Score=39.98 Aligned_cols=92 Identities=12% Similarity=0.110 Sum_probs=59.3
Q ss_pred CcEEEEcC--cccHHHHHHHHHCCCc-eEEEEECChHHHHHHHHhcCccccccCCCCcEEEEEcccccc---ccCCCeeE
Q 035593 79 GPIGILGF--GAGSAARLILDLYPEA-VIHGWELDPSVIKVAREFFALEKLEKSYPDRLFVYVGNALKA---SLKDGFSG 152 (269)
Q Consensus 79 ~~VL~iG~--G~G~~~~~l~~~~p~~-~v~~vEidp~~~~~a~~~~~~~~~~~~~~~rv~~~~~D~~~~---~~~~~yD~ 152 (269)
.+||+.|+ |.|..+..+++.. ++ +|+++..+++-.+.+++.++... -+.....|..+. ...+.+|+
T Consensus 156 ~~VlI~ga~g~vG~~aiqlAk~~-G~~~Vi~~~~s~~~~~~~~~~lGa~~-------vi~~~~~~~~~~i~~~~~~gvd~ 227 (345)
T cd08293 156 QTMVVSGAAGACGSLAGQIGRLL-GCSRVVGICGSDEKCQLLKSELGFDA-------AINYKTDNVAERLRELCPEGVDV 227 (345)
T ss_pred CEEEEECCCcHHHHHHHHHHHHc-CCCEEEEEcCCHHHHHHHHHhcCCcE-------EEECCCCCHHHHHHHHCCCCceE
Confidence 79999986 4667777777764 66 89999999988888877665321 011111121111 12357999
Q ss_pred EEEcCCCCCCCCCCCCcHHHHHHHHhhccCCcEEEEE
Q 035593 153 ILVDLFSKGSLLSELEDPNTWEKLRQCLRKGGRIMVN 189 (269)
Q Consensus 153 I~~d~~~~~~~~~~l~~~e~~~~~~~~L~pgG~l~~~ 189 (269)
|+ |.... ..+..+.+.|+++|.++..
T Consensus 228 vi-d~~g~----------~~~~~~~~~l~~~G~iv~~ 253 (345)
T cd08293 228 YF-DNVGG----------EISDTVISQMNENSHIILC 253 (345)
T ss_pred EE-ECCCc----------HHHHHHHHHhccCCEEEEE
Confidence 97 43321 2357788899999998863
No 330
>KOG0821 consensus Predicted ribosomal RNA adenine dimethylase [RNA processing and modification]
Probab=92.63 E-value=0.22 Score=42.18 Aligned_cols=61 Identities=23% Similarity=0.223 Sum_probs=47.8
Q ss_pred CCCcEEEEcCcccHHHHHHHHHCCCceEEEEECChHHHHHHHHhcCccccccCCCCcEEEEEcccccc
Q 035593 77 PPGPIGILGFGAGSAARLILDLYPEAVIHGWELDPSVIKVAREFFALEKLEKSYPDRLFVYVGNALKA 144 (269)
Q Consensus 77 ~~~~VL~iG~G~G~~~~~l~~~~p~~~v~~vEidp~~~~~a~~~~~~~~~~~~~~~rv~~~~~D~~~~ 144 (269)
...-|.+||-|.|.+++.+++. ...+..+||+|+..+.-.+-.... .+.+..++++|+..+
T Consensus 50 ~~~~v~eIgPgpggitR~il~a-~~~RL~vVE~D~RFip~LQ~L~EA------a~~~~~IHh~D~LR~ 110 (326)
T KOG0821|consen 50 TNAYVYEIGPGPGGITRSILNA-DVARLLVVEKDTRFIPGLQMLSEA------APGKLRIHHGDVLRF 110 (326)
T ss_pred ccceeEEecCCCCchhHHHHhc-chhheeeeeeccccChHHHHHhhc------CCcceEEecccccee
Confidence 4678999999999999999984 356999999999887654432221 245899999999876
No 331
>PRK13699 putative methylase; Provisional
Probab=92.56 E-value=0.28 Score=41.89 Aligned_cols=57 Identities=12% Similarity=0.022 Sum_probs=39.5
Q ss_pred EEEEEcccccc---ccCCCeeEEEEcCCCCCCC----C----CC---CCcHHHHHHHHhhccCCcEEEEEe
Q 035593 134 LFVYVGNALKA---SLKDGFSGILVDLFSKGSL----L----SE---LEDPNTWEKLRQCLRKGGRIMVNV 190 (269)
Q Consensus 134 v~~~~~D~~~~---~~~~~yD~I~~d~~~~~~~----~----~~---l~~~e~~~~~~~~L~pgG~l~~~~ 190 (269)
.+++++|+.+. -++++.|+|+.|.+=.... . .. -+..+++++++++|||||.+++..
T Consensus 2 ~~l~~gD~le~l~~lpd~SVDLIiTDPPY~i~~~~~~~~~~~~~~~~ew~~~~l~E~~RVLKpgg~l~if~ 72 (227)
T PRK13699 2 SRFILGNCIDVMARFPDNAVDFILTDPPYLVGFRDRQGRTIAGDKTDEWLQPACNEMYRVLKKDALMVSFY 72 (227)
T ss_pred CeEEechHHHHHHhCCccccceEEeCCCcccccccCCCcccccccHHHHHHHHHHHHHHHcCCCCEEEEEe
Confidence 36889999886 5678999999985332110 0 00 112467899999999999888754
No 332
>PRK06545 prephenate dehydrogenase; Validated
Probab=92.49 E-value=1.8 Score=39.59 Aligned_cols=94 Identities=20% Similarity=0.234 Sum_probs=52.1
Q ss_pred CcEEEEcCc--ccHHHHHHHHHCCCceEEEEECChHHHHHHHHhcCccccccCCCCcEEEEEccccccccCCCeeEEEEc
Q 035593 79 GPIGILGFG--AGSAARLILDLYPEAVIHGWELDPSVIKVAREFFALEKLEKSYPDRLFVYVGNALKASLKDGFSGILVD 156 (269)
Q Consensus 79 ~~VL~iG~G--~G~~~~~l~~~~p~~~v~~vEidp~~~~~a~~~~~~~~~~~~~~~rv~~~~~D~~~~~~~~~yD~I~~d 156 (269)
++|..||+| +|+++..+.+. +..+.+++.++.-.+.++.. +... +.-...|.. ......|+||+.
T Consensus 1 ~~I~iIG~GliG~siA~~L~~~--G~~v~i~~~~~~~~~~~~a~-~~~~--------~~~~~~~~~--~~~~~aDlVila 67 (359)
T PRK06545 1 RTVLIVGLGLIGGSLALAIKAA--GPDVFIIGYDPSAAQLARAL-GFGV--------IDELAADLQ--RAAAEADLIVLA 67 (359)
T ss_pred CeEEEEEeCHHHHHHHHHHHhc--CCCeEEEEeCCCHHHHHHHh-cCCC--------CcccccCHH--HHhcCCCEEEEe
Confidence 368999998 67777777764 34555666666554443321 1110 000011111 123568999986
Q ss_pred CCCCCCCCCCCCcHHHHHHHHh-hccCCcEEEEEecCC
Q 035593 157 LFSKGSLLSELEDPNTWEKLRQ-CLRKGGRIMVNVGGS 193 (269)
Q Consensus 157 ~~~~~~~~~~l~~~e~~~~~~~-~L~pgG~l~~~~~~~ 193 (269)
.... ...++++.+.. .++|+ .+++++.+.
T Consensus 68 vP~~-------~~~~vl~~l~~~~l~~~-~ivtDv~Sv 97 (359)
T PRK06545 68 VPVD-------ATAALLAELADLELKPG-VIVTDVGSV 97 (359)
T ss_pred CCHH-------HHHHHHHHHhhcCCCCC-cEEEeCccc
Confidence 5432 24678888877 47775 566666543
No 333
>PRK05808 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=92.45 E-value=0.2 Score=44.01 Aligned_cols=104 Identities=10% Similarity=0.027 Sum_probs=63.4
Q ss_pred CcEEEEcCc--ccHHHHHHHHHCCCceEEEEECChHHHHHHHHhcCc-----cccccCC-------CCcEEEEEcccccc
Q 035593 79 GPIGILGFG--AGSAARLILDLYPEAVIHGWELDPSVIKVAREFFAL-----EKLEKSY-------PDRLFVYVGNALKA 144 (269)
Q Consensus 79 ~~VL~iG~G--~G~~~~~l~~~~p~~~v~~vEidp~~~~~a~~~~~~-----~~~~~~~-------~~rv~~~~~D~~~~ 144 (269)
.+|..||+| ++.++..+++ .+.+|+++|++++.++.++++... ...+... -.++++. .|.
T Consensus 4 ~kI~VIG~G~mG~~ia~~la~--~g~~V~~~d~~~~~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~l~~~-~~~--- 77 (282)
T PRK05808 4 QKIGVIGAGTMGNGIAQVCAV--AGYDVVMVDISDAAVDRGLATITKSLDRLVKKGKMTEADKEAALARITGT-TDL--- 77 (282)
T ss_pred cEEEEEccCHHHHHHHHHHHH--CCCceEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEEe-CCH---
Confidence 469999999 6666676665 367999999999998765533210 0000000 0133322 222
Q ss_pred ccCCCeeEEEEcCCCCCCCCCCCCcHHHHHHHHhhccCCcEEEEEecCC
Q 035593 145 SLKDGFSGILVDLFSKGSLLSELEDPNTWEKLRQCLRKGGRIMVNVGGS 193 (269)
Q Consensus 145 ~~~~~yD~I~~d~~~~~~~~~~l~~~e~~~~~~~~L~pgG~l~~~~~~~ 193 (269)
..-+..|+|+....... ....++|+++.+.++|+.+++.|..+.
T Consensus 78 ~~~~~aDlVi~av~e~~-----~~k~~~~~~l~~~~~~~~il~s~ts~~ 121 (282)
T PRK05808 78 DDLKDADLVIEAATENM-----DLKKKIFAQLDEIAKPEAILATNTSSL 121 (282)
T ss_pred HHhccCCeeeecccccH-----HHHHHHHHHHHhhCCCCcEEEECCCCC
Confidence 12356799987543221 113589999999999998887777554
No 334
>PRK06522 2-dehydropantoate 2-reductase; Reviewed
Probab=92.33 E-value=1.5 Score=38.61 Aligned_cols=95 Identities=16% Similarity=0.082 Sum_probs=54.6
Q ss_pred cEEEEcCcc--cHHHHHHHHHCCCceEEEEECChHHHHHHHHhcCccccccCCCCcEEEEEccccccccCCCeeEEEEcC
Q 035593 80 PIGILGFGA--GSAARLILDLYPEAVIHGWELDPSVIKVAREFFALEKLEKSYPDRLFVYVGNALKASLKDGFSGILVDL 157 (269)
Q Consensus 80 ~VL~iG~G~--G~~~~~l~~~~p~~~v~~vEidp~~~~~a~~~~~~~~~~~~~~~rv~~~~~D~~~~~~~~~yD~I~~d~ 157 (269)
+|+.||+|. +.++..|.+ .+.+|+.++.+++.++..++. ++.- .+........-..+....+.+|+|++..
T Consensus 2 ~I~IiG~G~~G~~~a~~L~~--~g~~V~~~~r~~~~~~~~~~~-g~~~----~~~~~~~~~~~~~~~~~~~~~d~vila~ 74 (304)
T PRK06522 2 KIAILGAGAIGGLFGAALAQ--AGHDVTLVARRGAHLDALNEN-GLRL----EDGEITVPVLAADDPAELGPQDLVILAV 74 (304)
T ss_pred EEEEECCCHHHHHHHHHHHh--CCCeEEEEECChHHHHHHHHc-CCcc----cCCceeecccCCCChhHcCCCCEEEEec
Confidence 689999883 334444444 357899999988777665543 2210 0011110000000111126899999864
Q ss_pred CCCCCCCCCCCcHHHHHHHHhhccCCcEEEE
Q 035593 158 FSKGSLLSELEDPNTWEKLRQCLRKGGRIMV 188 (269)
Q Consensus 158 ~~~~~~~~~l~~~e~~~~~~~~L~pgG~l~~ 188 (269)
... ...+.++.+...+.++..++.
T Consensus 75 k~~-------~~~~~~~~l~~~l~~~~~iv~ 98 (304)
T PRK06522 75 KAY-------QLPAALPSLAPLLGPDTPVLF 98 (304)
T ss_pred ccc-------cHHHHHHHHhhhcCCCCEEEE
Confidence 432 257889999998988766654
No 335
>COG1748 LYS9 Saccharopine dehydrogenase and related proteins [Amino acid transport and metabolism]
Probab=92.27 E-value=0.93 Score=41.84 Aligned_cols=106 Identities=16% Similarity=0.042 Sum_probs=64.4
Q ss_pred CcEEEEcCc-ccHHHHHHHHHCCCceEEEEECChHHHHHHHHhcCccccccCCCCcEEEEEcccccc----ccCCCeeEE
Q 035593 79 GPIGILGFG-AGSAARLILDLYPEAVIHGWELDPSVIKVAREFFALEKLEKSYPDRLFVYVGNALKA----SLKDGFSGI 153 (269)
Q Consensus 79 ~~VL~iG~G-~G~~~~~l~~~~p~~~v~~vEidp~~~~~a~~~~~~~~~~~~~~~rv~~~~~D~~~~----~~~~~yD~I 153 (269)
.+||.|||| -|..+.+.+.+....+|++.+.+++-.+.+.... ..+++.+.-|+.+. ..-..+|+|
T Consensus 2 ~~ilviGaG~Vg~~va~~la~~~d~~V~iAdRs~~~~~~i~~~~---------~~~v~~~~vD~~d~~al~~li~~~d~V 72 (389)
T COG1748 2 MKILVIGAGGVGSVVAHKLAQNGDGEVTIADRSKEKCARIAELI---------GGKVEALQVDAADVDALVALIKDFDLV 72 (389)
T ss_pred CcEEEECCchhHHHHHHHHHhCCCceEEEEeCCHHHHHHHHhhc---------cccceeEEecccChHHHHHHHhcCCEE
Confidence 589999995 2333333322223479999999988877776653 24789999998876 223456999
Q ss_pred EEcCCCCCCC-------------CCCCCcHHHHHHHHhhccCCcEEEEEecCC
Q 035593 154 LVDLFSKGSL-------------LSELEDPNTWEKLRQCLRKGGRIMVNVGGS 193 (269)
Q Consensus 154 ~~d~~~~~~~-------------~~~l~~~e~~~~~~~~L~pgG~l~~~~~~~ 193 (269)
+..+...... ...-+.++...++...-+..|+.++.-.+-
T Consensus 73 In~~p~~~~~~i~ka~i~~gv~yvDts~~~~~~~~~~~~a~~Agit~v~~~G~ 125 (389)
T COG1748 73 INAAPPFVDLTILKACIKTGVDYVDTSYYEEPPWKLDEEAKKAGITAVLGCGF 125 (389)
T ss_pred EEeCCchhhHHHHHHHHHhCCCEEEcccCCchhhhhhHHHHHcCeEEEcccCc
Confidence 8755433211 000011223355666666778777766554
No 336
>cd08295 double_bond_reductase_like Arabidopsis alkenal double bond reductase and leukotriene B4 12-hydroxydehydrogenase. This group includes proteins identified as the Arabidopsis alkenal double bond reductase and leukotriene B4 12-hydroxydehydrogenase. The Arabidopsis enzyme, a member of the medium chain dehydrogenase/reductase family, catalyzes the reduction of 7-8-double bond of phenylpropanal substrates as a plant defense mechanism. Prostaglandins and related eicosanoids (lipid mediators involved in host defense and inflamation) are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. Leukotriene B4 (LTB4) can be metabolized by LTB4 20-hydroxylase in
Probab=92.13 E-value=1.5 Score=39.14 Aligned_cols=97 Identities=8% Similarity=0.046 Sum_probs=63.0
Q ss_pred CCCCCCcEEEEcC--cccHHHHHHHHHCCCceEEEEECChHHHHHHHHhcCccccccCCCCcEEEEEc-cccc-c--ccC
Q 035593 74 PILPPGPIGILGF--GAGSAARLILDLYPEAVIHGWELDPSVIKVAREFFALEKLEKSYPDRLFVYVG-NALK-A--SLK 147 (269)
Q Consensus 74 ~l~~~~~VL~iG~--G~G~~~~~l~~~~p~~~v~~vEidp~~~~~a~~~~~~~~~~~~~~~rv~~~~~-D~~~-~--~~~ 147 (269)
.+.+..+||..|+ |-|..+..+++. .+++|+++..+++-.+.+++.++... -+..-.. |..+ . ...
T Consensus 148 ~~~~g~~VlI~Ga~G~vG~~aiqlAk~-~G~~Vi~~~~~~~~~~~~~~~lGa~~-------vi~~~~~~~~~~~i~~~~~ 219 (338)
T cd08295 148 KPKKGETVFVSAASGAVGQLVGQLAKL-KGCYVVGSAGSDEKVDLLKNKLGFDD-------AFNYKEEPDLDAALKRYFP 219 (338)
T ss_pred CCCCCCEEEEecCccHHHHHHHHHHHH-cCCEEEEEeCCHHHHHHHHHhcCCce-------eEEcCCcccHHHHHHHhCC
Confidence 3556889999996 466666777775 47789999999998888887555321 0110011 2111 1 123
Q ss_pred CCeeEEEEcCCCCCCCCCCCCcHHHHHHHHhhccCCcEEEEE
Q 035593 148 DGFSGILVDLFSKGSLLSELEDPNTWEKLRQCLRKGGRIMVN 189 (269)
Q Consensus 148 ~~yD~I~~d~~~~~~~~~~l~~~e~~~~~~~~L~pgG~l~~~ 189 (269)
..+|+|+ |... ...+..+.++|+++|.++..
T Consensus 220 ~gvd~v~-d~~g----------~~~~~~~~~~l~~~G~iv~~ 250 (338)
T cd08295 220 NGIDIYF-DNVG----------GKMLDAVLLNMNLHGRIAAC 250 (338)
T ss_pred CCcEEEE-ECCC----------HHHHHHHHHHhccCcEEEEe
Confidence 5799987 4322 24678888999999998864
No 337
>cd08285 NADP_ADH NADP(H)-dependent alcohol dehydrogenases. This group is predominated by atypical alcohol dehydrogenases; they exist as tetramers and exhibit specificity for NADP(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like other zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), tetrameric ADHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains; however, they do not have and a structural zinc in a lobe of the catalytic domain. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.
Probab=92.11 E-value=1.2 Score=39.93 Aligned_cols=96 Identities=20% Similarity=0.275 Sum_probs=59.6
Q ss_pred CCCCCcEEEEcCc-ccHHHHHHHHHCCCc-eEEEEECChHHHHHHHHhcCccccccCCCCcEEEEEccccc----cccCC
Q 035593 75 ILPPGPIGILGFG-AGSAARLILDLYPEA-VIHGWELDPSVIKVAREFFALEKLEKSYPDRLFVYVGNALK----ASLKD 148 (269)
Q Consensus 75 l~~~~~VL~iG~G-~G~~~~~l~~~~p~~-~v~~vEidp~~~~~a~~~~~~~~~~~~~~~rv~~~~~D~~~----~~~~~ 148 (269)
+.+..+||+.|+| .|..+..+++.. +. .+++++.+++-.+.+++ ++... -+.....+... .....
T Consensus 164 ~~~g~~vlI~g~g~iG~~~~~lak~~-G~~~v~~~~~~~~~~~~~~~-~g~~~-------~v~~~~~~~~~~i~~~~~~~ 234 (351)
T cd08285 164 IKLGDTVAVFGIGPVGLMAVAGARLR-GAGRIIAVGSRPNRVELAKE-YGATD-------IVDYKNGDVVEQILKLTGGK 234 (351)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHc-CCCeEEEEeCCHHHHHHHHH-cCCce-------EecCCCCCHHHHHHHHhCCC
Confidence 4467899999765 344555566654 55 69999999988888876 44211 01111111111 12345
Q ss_pred CeeEEEEcCCCCCCCCCCCCcHHHHHHHHhhccCCcEEEEE
Q 035593 149 GFSGILVDLFSKGSLLSELEDPNTWEKLRQCLRKGGRIMVN 189 (269)
Q Consensus 149 ~yD~I~~d~~~~~~~~~~l~~~e~~~~~~~~L~pgG~l~~~ 189 (269)
.+|+|+- ... ..+.+..+.++|+++|.++.-
T Consensus 235 ~~d~vld-~~g---------~~~~~~~~~~~l~~~G~~v~~ 265 (351)
T cd08285 235 GVDAVII-AGG---------GQDTFEQALKVLKPGGTISNV 265 (351)
T ss_pred CCcEEEE-CCC---------CHHHHHHHHHHhhcCCEEEEe
Confidence 6998874 221 235788899999999988753
No 338
>cd00401 AdoHcyase S-adenosyl-L-homocysteine hydrolase (AdoHycase) catalyzes the hydrolysis of S-adenosyl-L-homocysteine (AdoHyc) to form adenosine (Ado) and homocysteine (Hcy). The equilibrium lies far on the side of AdoHyc synthesis, but in nature the removal of Ado and Hyc is sufficiently fast, so that the net reaction is in the direction of hydrolysis. Since AdoHyc is a potent inhibitor of S-adenosyl-L-methionine dependent methyltransferases, AdoHycase plays a critical role in the modulation of the activity of various methyltransferases. The enzyme forms homooligomers of 45-50kDa subunits, each binding one molecule of NAD+.
Probab=92.06 E-value=1.7 Score=40.61 Aligned_cols=96 Identities=15% Similarity=0.092 Sum_probs=58.7
Q ss_pred HHHHhc-CCCCCCCCcEEEEcCcc-cHHHHHHHHHCCCceEEEEECChHHHHHHHHhcCccccccCCCCcEEEEEccccc
Q 035593 66 FDAFAT-LPPILPPGPIGILGFGA-GSAARLILDLYPEAVIHGWELDPSVIKVAREFFALEKLEKSYPDRLFVYVGNALK 143 (269)
Q Consensus 66 ~~~~~~-~~~l~~~~~VL~iG~G~-G~~~~~l~~~~p~~~v~~vEidp~~~~~a~~~~~~~~~~~~~~~rv~~~~~D~~~ 143 (269)
++.++. .....+.++|+++|+|. |.....+++. -+++|+++|++|.-.+.|++. +.. ... ..+
T Consensus 189 ~~~i~r~t~~~l~GktVvViG~G~IG~~va~~ak~-~Ga~ViV~d~d~~R~~~A~~~-G~~-----------~~~--~~e 253 (413)
T cd00401 189 IDGIKRATDVMIAGKVAVVAGYGDVGKGCAQSLRG-QGARVIVTEVDPICALQAAME-GYE-----------VMT--MEE 253 (413)
T ss_pred HHHHHHhcCCCCCCCEEEEECCCHHHHHHHHHHHH-CCCEEEEEECChhhHHHHHhc-CCE-----------Ecc--HHH
Confidence 344432 23345789999999995 4444445553 367999999999988887763 321 111 111
Q ss_pred cccCCCeeEEEEcCCCCCCCCCCCCcHHHHHH-HHhhccCCcEEEE
Q 035593 144 ASLKDGFSGILVDLFSKGSLLSELEDPNTWEK-LRQCLRKGGRIMV 188 (269)
Q Consensus 144 ~~~~~~yD~I~~d~~~~~~~~~~l~~~e~~~~-~~~~L~pgG~l~~ 188 (269)
. -...|+|+.. .. ....+.. ..+.+++||+++.
T Consensus 254 ~--v~~aDVVI~a-tG---------~~~~i~~~~l~~mk~Ggilvn 287 (413)
T cd00401 254 A--VKEGDIFVTT-TG---------NKDIITGEHFEQMKDGAIVCN 287 (413)
T ss_pred H--HcCCCEEEEC-CC---------CHHHHHHHHHhcCCCCcEEEE
Confidence 1 1357988742 21 2345554 4788999887754
No 339
>cd08232 idonate-5-DH L-idonate 5-dehydrogenase. L-idonate 5-dehydrogenase (L-ido 5-DH ) catalyzes the conversion of L-lodonate to 5-ketogluconate in the metabolism of L-Idonate to 6-P-gluconate. In E. coli, this GntII pathway is a subsidiary pathway to the canonical GntI system, which also phosphorylates and transports gluconate. L-ido 5-DH is found in an operon with a regulator indR, transporter idnT, 5-keto-D-gluconate 5-reductase, and Gnt kinase. L-ido 5-DH is a zinc-dependent alcohol dehydrogenase-like protein. The alcohol dehydrogenase ADH-like family of proteins is a diverse group of proteins related to the first identified member, class I mammalian ADH. This group is also called the medium chain dehydrogenases/reductase family (MDR) which displays a broad range of activities and are distinguished from the smaller short chain dehydrogenases(~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domai
Probab=92.06 E-value=1.7 Score=38.75 Aligned_cols=94 Identities=16% Similarity=0.165 Sum_probs=59.1
Q ss_pred CCCcEEEEcCcc-cHHHHHHHHHCCCc-eEEEEECChHHHHHHHHhcCccccccCCCCcEEEEEcccccc-ccCCCeeEE
Q 035593 77 PPGPIGILGFGA-GSAARLILDLYPEA-VIHGWELDPSVIKVAREFFALEKLEKSYPDRLFVYVGNALKA-SLKDGFSGI 153 (269)
Q Consensus 77 ~~~~VL~iG~G~-G~~~~~l~~~~p~~-~v~~vEidp~~~~~a~~~~~~~~~~~~~~~rv~~~~~D~~~~-~~~~~yD~I 153 (269)
+..+||+.|+|+ |..+..+++.. +. +|++++.+++..+.+++. +.... +.....+.... .....+|+|
T Consensus 165 ~~~~VLI~g~g~vG~~~~~lak~~-G~~~v~~~~~s~~~~~~~~~~-g~~~v-------i~~~~~~~~~~~~~~~~vd~v 235 (339)
T cd08232 165 AGKRVLVTGAGPIGALVVAAARRA-GAAEIVATDLADAPLAVARAM-GADET-------VNLARDPLAAYAADKGDFDVV 235 (339)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHc-CCcEEEEECCCHHHHHHHHHc-CCCEE-------EcCCchhhhhhhccCCCccEE
Confidence 678999988765 55666666654 65 899999999988877764 32110 00000111122 223459999
Q ss_pred EEcCCCCCCCCCCCCcHHHHHHHHhhccCCcEEEEE
Q 035593 154 LVDLFSKGSLLSELEDPNTWEKLRQCLRKGGRIMVN 189 (269)
Q Consensus 154 ~~d~~~~~~~~~~l~~~e~~~~~~~~L~pgG~l~~~ 189 (269)
+-. .. ....++.+.+.|+++|.++..
T Consensus 236 ld~-~g---------~~~~~~~~~~~L~~~G~~v~~ 261 (339)
T cd08232 236 FEA-SG---------APAALASALRVVRPGGTVVQV 261 (339)
T ss_pred EEC-CC---------CHHHHHHHHHHHhcCCEEEEE
Confidence 742 21 135678889999999998864
No 340
>PRK10669 putative cation:proton antiport protein; Provisional
Probab=92.05 E-value=1.3 Score=42.93 Aligned_cols=92 Identities=14% Similarity=0.094 Sum_probs=58.5
Q ss_pred CCcEEEEcCcccHHHHHHHHHC--CCceEEEEECChHHHHHHHHhcCccccccCCCCcEEEEEcccccc-----ccCCCe
Q 035593 78 PGPIGILGFGAGSAARLILDLY--PEAVIHGWELDPSVIKVAREFFALEKLEKSYPDRLFVYVGNALKA-----SLKDGF 150 (269)
Q Consensus 78 ~~~VL~iG~G~G~~~~~l~~~~--p~~~v~~vEidp~~~~~a~~~~~~~~~~~~~~~rv~~~~~D~~~~-----~~~~~y 150 (269)
..+|+.+|+| ..++.+.+.. .+.+++++|.|++.++.+++. ...++++|+.+. ..-++.
T Consensus 417 ~~hiiI~G~G--~~G~~la~~L~~~g~~vvvId~d~~~~~~~~~~------------g~~~i~GD~~~~~~L~~a~i~~a 482 (558)
T PRK10669 417 CNHALLVGYG--RVGSLLGEKLLAAGIPLVVIETSRTRVDELRER------------GIRAVLGNAANEEIMQLAHLDCA 482 (558)
T ss_pred CCCEEEECCC--hHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHC------------CCeEEEcCCCCHHHHHhcCcccc
Confidence 3688998876 3333333322 367899999999998888753 268899999875 234688
Q ss_pred eEEEEcCCCCCCCCCCCCcHHHHHHHHhhccCCcEEEEEe
Q 035593 151 SGILVDLFSKGSLLSELEDPNTWEKLRQCLRKGGRIMVNV 190 (269)
Q Consensus 151 D~I~~d~~~~~~~~~~l~~~e~~~~~~~~L~pgG~l~~~~ 190 (269)
|.+++...+.. .....-.+.+.+.|+-.++.-.
T Consensus 483 ~~viv~~~~~~-------~~~~iv~~~~~~~~~~~iiar~ 515 (558)
T PRK10669 483 RWLLLTIPNGY-------EAGEIVASAREKRPDIEIIARA 515 (558)
T ss_pred CEEEEEcCChH-------HHHHHHHHHHHHCCCCeEEEEE
Confidence 98876543321 1122333345556776666655
No 341
>PRK03659 glutathione-regulated potassium-efflux system protein KefB; Provisional
Probab=92.04 E-value=1.1 Score=43.87 Aligned_cols=94 Identities=23% Similarity=0.291 Sum_probs=60.8
Q ss_pred CCcEEEEcCc-ccHH-HHHHHHHCCCceEEEEECChHHHHHHHHhcCccccccCCCCcEEEEEcccccc-----ccCCCe
Q 035593 78 PGPIGILGFG-AGSA-ARLILDLYPEAVIHGWELDPSVIKVAREFFALEKLEKSYPDRLFVYVGNALKA-----SLKDGF 150 (269)
Q Consensus 78 ~~~VL~iG~G-~G~~-~~~l~~~~p~~~v~~vEidp~~~~~a~~~~~~~~~~~~~~~rv~~~~~D~~~~-----~~~~~y 150 (269)
..+|+.+|+| -|.. ++.+.+ .+.+++++|.||+.++.+++. + ..++.||+.+. ..-++.
T Consensus 400 ~~~vII~G~Gr~G~~va~~L~~--~g~~vvvID~d~~~v~~~~~~-g-----------~~v~~GDat~~~~L~~agi~~A 465 (601)
T PRK03659 400 KPQVIIVGFGRFGQVIGRLLMA--NKMRITVLERDISAVNLMRKY-G-----------YKVYYGDATQLELLRAAGAEKA 465 (601)
T ss_pred cCCEEEecCchHHHHHHHHHHh--CCCCEEEEECCHHHHHHHHhC-C-----------CeEEEeeCCCHHHHHhcCCccC
Confidence 3578888876 2332 233332 467999999999999988763 2 57899999875 234578
Q ss_pred eEEEEcCCCCCCCCCCCCcHHHHHHHHhhccCCcEEEEEecC
Q 035593 151 SGILVDLFSKGSLLSELEDPNTWEKLRQCLRKGGRIMVNVGG 192 (269)
Q Consensus 151 D~I~~d~~~~~~~~~~l~~~e~~~~~~~~L~pgG~l~~~~~~ 192 (269)
|++++...+.. .....-...+.+.|+..++.-..+
T Consensus 466 ~~vv~~~~d~~-------~n~~i~~~~r~~~p~~~IiaRa~~ 500 (601)
T PRK03659 466 EAIVITCNEPE-------DTMKIVELCQQHFPHLHILARARG 500 (601)
T ss_pred CEEEEEeCCHH-------HHHHHHHHHHHHCCCCeEEEEeCC
Confidence 88887544321 112333344557788777776644
No 342
>COG0569 TrkA K+ transport systems, NAD-binding component [Inorganic ion transport and metabolism]
Probab=91.99 E-value=0.74 Score=39.22 Aligned_cols=68 Identities=18% Similarity=0.078 Sum_probs=48.1
Q ss_pred CcEEEEcCc--ccHHHHHHHHHCCCceEEEEECChHHHHHHHHhcCccccccCCCCcEEEEEcccccc-----ccCCCee
Q 035593 79 GPIGILGFG--AGSAARLILDLYPEAVIHGWELDPSVIKVAREFFALEKLEKSYPDRLFVYVGNALKA-----SLKDGFS 151 (269)
Q Consensus 79 ~~VL~iG~G--~G~~~~~l~~~~p~~~v~~vEidp~~~~~a~~~~~~~~~~~~~~~rv~~~~~D~~~~-----~~~~~yD 151 (269)
.+++.+||| ++.+++.|.+ .+..|+++|.|++.++..... ..-.+++++|+.+. ..-..+|
T Consensus 1 m~iiIiG~G~vG~~va~~L~~--~g~~Vv~Id~d~~~~~~~~~~----------~~~~~~v~gd~t~~~~L~~agi~~aD 68 (225)
T COG0569 1 MKIIIIGAGRVGRSVARELSE--EGHNVVLIDRDEERVEEFLAD----------ELDTHVVIGDATDEDVLEEAGIDDAD 68 (225)
T ss_pred CEEEEECCcHHHHHHHHHHHh--CCCceEEEEcCHHHHHHHhhh----------hcceEEEEecCCCHHHHHhcCCCcCC
Confidence 368899998 5555666655 367999999999887763321 12378999999875 2356899
Q ss_pred EEEEcCC
Q 035593 152 GILVDLF 158 (269)
Q Consensus 152 ~I~~d~~ 158 (269)
+++....
T Consensus 69 ~vva~t~ 75 (225)
T COG0569 69 AVVAATG 75 (225)
T ss_pred EEEEeeC
Confidence 9987543
No 343
>PF02558 ApbA: Ketopantoate reductase PanE/ApbA; InterPro: IPR013332 ApbA, the ketopantoate reductase enzyme 1.1.1.169 from EC of Salmonella typhimurium is required for the synthesis of thiamine via the alternative pyrimidine biosynthetic pathway []. Precursors to the pyrimidine moiety of thiamine are synthesized de novo by the purine biosynthetic pathway or the alternative pyrimidine biosynthetic (APB) pathway. The ApbA protein catalyzes the NADPH-specific reduction of ketopantoic acid to pantoic acid. This activity had previously been associated with the pantothenate biosynthetic gene panE []. ApbA and PanE are allelic [].; GO: 0008677 2-dehydropantoate 2-reductase activity, 0055114 oxidation-reduction process; PDB: 3EGO_B 3HWR_B 2QYT_A 1YJQ_A 1KS9_A 2OFP_A 1YON_A 3G17_E 3GHY_B 3I83_B ....
Probab=91.96 E-value=0.86 Score=35.72 Aligned_cols=97 Identities=15% Similarity=0.103 Sum_probs=53.8
Q ss_pred EEEEcCc-ccHHHHHHHHHCCCceEEEEECChHHHHHHHHh-cCccccccCCCCcEEEEEcccccc--ccCCCeeEEEEc
Q 035593 81 IGILGFG-AGSAARLILDLYPEAVIHGWELDPSVIKVAREF-FALEKLEKSYPDRLFVYVGNALKA--SLKDGFSGILVD 156 (269)
Q Consensus 81 VL~iG~G-~G~~~~~l~~~~p~~~v~~vEidp~~~~~a~~~-~~~~~~~~~~~~rv~~~~~D~~~~--~~~~~yD~I~~d 156 (269)
|+++|+| .|.+..+.++. .+.+|+.+.-.+ -.+..++. +.+.. ...+..+........ ...+.||+||+.
T Consensus 1 I~I~G~GaiG~~~a~~L~~-~g~~V~l~~r~~-~~~~~~~~g~~~~~----~~~~~~~~~~~~~~~~~~~~~~~D~viv~ 74 (151)
T PF02558_consen 1 ILIIGAGAIGSLYAARLAQ-AGHDVTLVSRSP-RLEAIKEQGLTITG----PDGDETVQPPIVISAPSADAGPYDLVIVA 74 (151)
T ss_dssp EEEESTSHHHHHHHHHHHH-TTCEEEEEESHH-HHHHHHHHCEEEEE----TTEEEEEEEEEEESSHGHHHSTESEEEE-
T ss_pred CEEECcCHHHHHHHHHHHH-CCCceEEEEccc-cHHhhhheeEEEEe----cccceecccccccCcchhccCCCcEEEEE
Confidence 6788887 23333333332 688999999988 44443332 21111 010011111110111 245789999986
Q ss_pred CCCCCCCCCCCCcHHHHHHHHhhccCCcEEEEEe
Q 035593 157 LFSKGSLLSELEDPNTWEKLRQCLRKGGRIMVNV 190 (269)
Q Consensus 157 ~~~~~~~~~~l~~~e~~~~~~~~L~pgG~l~~~~ 190 (269)
.-+. ...+.++.++..++++..+++-.
T Consensus 75 vKa~-------~~~~~l~~l~~~~~~~t~iv~~q 101 (151)
T PF02558_consen 75 VKAY-------QLEQALQSLKPYLDPNTTIVSLQ 101 (151)
T ss_dssp SSGG-------GHHHHHHHHCTGEETTEEEEEES
T ss_pred eccc-------chHHHHHHHhhccCCCcEEEEEe
Confidence 4322 25789999999999997666543
No 344
>PF04378 RsmJ: Ribosomal RNA small subunit methyltransferase D, RsmJ; InterPro: IPR007473 This is a bacterial protein of unknown function, possibly secreted.; PDB: 2OO3_A.
Probab=91.78 E-value=1.7 Score=37.54 Aligned_cols=123 Identities=15% Similarity=0.082 Sum_probs=67.7
Q ss_pred EEEcCcccHHHHHHHHHCCCceEEEEECChHHHHHHHHhcCccccccCCCCcEEEEEcccccc-----ccCCCeeEEEEc
Q 035593 82 GILGFGAGSAARLILDLYPEAVIHGWELDPSVIKVAREFFALEKLEKSYPDRLFVYVGNALKA-----SLKDGFSGILVD 156 (269)
Q Consensus 82 L~iG~G~G~~~~~l~~~~p~~~v~~vEidp~~~~~a~~~~~~~~~~~~~~~rv~~~~~D~~~~-----~~~~~yD~I~~d 156 (269)
|..=.|+=.++..+++ +.-+...+|+.|+-.+.-+++|.- +.+++++..|+.+. .+.++=-+|++|
T Consensus 62 l~~YPGSP~ia~~llR--~qDrl~l~ELHp~d~~~L~~~~~~-------~~~v~v~~~DG~~~l~allPP~~rRglVLID 132 (245)
T PF04378_consen 62 LRFYPGSPAIAARLLR--EQDRLVLFELHPQDFEALKKNFRR-------DRRVRVHHRDGYEGLKALLPPPERRGLVLID 132 (245)
T ss_dssp --EEE-HHHHHHHHS---TTSEEEEE--SHHHHHHHTTS--T-------TS-EEEE-S-HHHHHHHH-S-TTS-EEEEE-
T ss_pred cCcCCCCHHHHHHhCC--ccceEEEEecCchHHHHHHHHhcc-------CCccEEEeCchhhhhhhhCCCCCCCeEEEEC
Confidence 4444577777777766 677999999999999998888752 46899999999985 345567799998
Q ss_pred C-CCCCCCCCCCCcHHHHHHHHhhccCCcEEEEEecCCCccccccccchhHHHHHHHHHHHHHhcCceEEE
Q 035593 157 L-FSKGSLLSELEDPNTWEKLRQCLRKGGRIMVNVGGSCVEAEDSRRDGKVVMEATLKAMHKVFGKKLYVL 226 (269)
Q Consensus 157 ~-~~~~~~~~~l~~~e~~~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~F~~~v~~~ 226 (269)
. |... ...-...+.+.++.++- +.|+++++..-. + ....+.+.+.|++.-...+..+
T Consensus 133 PpYE~~--~dy~~v~~~l~~a~kR~-~~G~~~iWYPi~---------~-~~~~~~~~~~l~~~~~~~~l~~ 190 (245)
T PF04378_consen 133 PPYEQK--DDYQRVVDALAKALKRW-PTGVYAIWYPIK---------D-RERVDRFLRALKALGIKKVLRA 190 (245)
T ss_dssp ----ST--THHHHHHHHHHHHHHH--TTSEEEEEEEES---------S-HHHHHHHHHHHHHH-SSE-EEE
T ss_pred CCCCCc--hHHHHHHHHHHHHHHhc-CCcEEEEEeecc---------c-HHHHHHHHHHHHhcCCCCeEEE
Confidence 5 2211 00111124444444443 579998877432 1 2346777888887643344444
No 345
>PLN02586 probable cinnamyl alcohol dehydrogenase
Probab=91.77 E-value=1.9 Score=39.22 Aligned_cols=93 Identities=17% Similarity=0.174 Sum_probs=54.1
Q ss_pred CCCCcEEEEcCc-ccHHHHHHHHHCCCceEEEEECChHHHHHHHHhcCccccccCCCCcEEEEE-cccccc-ccCCCeeE
Q 035593 76 LPPGPIGILGFG-AGSAARLILDLYPEAVIHGWELDPSVIKVAREFFALEKLEKSYPDRLFVYV-GNALKA-SLKDGFSG 152 (269)
Q Consensus 76 ~~~~~VL~iG~G-~G~~~~~l~~~~p~~~v~~vEidp~~~~~a~~~~~~~~~~~~~~~rv~~~~-~D~~~~-~~~~~yD~ 152 (269)
.+..+||+.|+| -|..+..+++.. +++|++++.+++-...+.+.++.. .++. .+.... ...+.+|+
T Consensus 182 ~~g~~VlV~G~G~vG~~avq~Ak~~-Ga~vi~~~~~~~~~~~~~~~~Ga~----------~vi~~~~~~~~~~~~~~~D~ 250 (360)
T PLN02586 182 EPGKHLGVAGLGGLGHVAVKIGKAF-GLKVTVISSSSNKEDEAINRLGAD----------SFLVSTDPEKMKAAIGTMDY 250 (360)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHC-CCEEEEEeCCcchhhhHHHhCCCc----------EEEcCCCHHHHHhhcCCCCE
Confidence 467789998875 444555566653 678888888775543333334421 1110 111111 11125898
Q ss_pred EEEcCCCCCCCCCCCCcHHHHHHHHhhccCCcEEEEE
Q 035593 153 ILVDLFSKGSLLSELEDPNTWEKLRQCLRKGGRIMVN 189 (269)
Q Consensus 153 I~~d~~~~~~~~~~l~~~e~~~~~~~~L~pgG~l~~~ 189 (269)
|+ |... ....++.+.+.|+++|.++.-
T Consensus 251 vi-d~~g---------~~~~~~~~~~~l~~~G~iv~v 277 (360)
T PLN02586 251 II-DTVS---------AVHALGPLLGLLKVNGKLITL 277 (360)
T ss_pred EE-ECCC---------CHHHHHHHHHHhcCCcEEEEe
Confidence 87 4332 234677888999999998764
No 346
>COG3129 Predicted SAM-dependent methyltransferase [General function prediction only]
Probab=91.73 E-value=0.46 Score=40.55 Aligned_cols=82 Identities=13% Similarity=0.009 Sum_probs=54.1
Q ss_pred CCCcEEEEcCcccHHHHHHHHHCCCceEEEEECChHHHHHHHHhcCccccccCCCCcEEEEEccccc--c----ccCCCe
Q 035593 77 PPGPIGILGFGAGSAARLILDLYPEAVIHGWELDPSVIKVAREFFALEKLEKSYPDRLFVYVGNALK--A----SLKDGF 150 (269)
Q Consensus 77 ~~~~VL~iG~G~G~~~~~l~~~~p~~~v~~vEidp~~~~~a~~~~~~~~~~~~~~~rv~~~~~D~~~--~----~~~~~y 150 (269)
+..++||||.|.-.+=-.+-.+.=+.+.++-|||+..++.|+.....++.. ...+++..+.-.+ | ...++|
T Consensus 78 ~~i~~LDIGvGAnCIYPliG~~eYgwrfvGseid~~sl~sA~~ii~~N~~l---~~~I~lr~qk~~~~if~giig~nE~y 154 (292)
T COG3129 78 KNIRILDIGVGANCIYPLIGVHEYGWRFVGSEIDSQSLSSAKAIISANPGL---ERAIRLRRQKDSDAIFNGIIGKNERY 154 (292)
T ss_pred CceEEEeeccCcccccccccceeecceeecCccCHHHHHHHHHHHHcCcch---hhheeEEeccCcccccccccccccee
Confidence 467899999987766544443323679999999999999999876543211 1235554433222 1 347899
Q ss_pred eEEEEcCCCCC
Q 035593 151 SGILVDLFSKG 161 (269)
Q Consensus 151 D~I~~d~~~~~ 161 (269)
|+.+++.+-+.
T Consensus 155 d~tlCNPPFh~ 165 (292)
T COG3129 155 DATLCNPPFHD 165 (292)
T ss_pred eeEecCCCcch
Confidence 99999765443
No 347
>COG2961 ComJ Protein involved in catabolism of external DNA [General function prediction only]
Probab=91.53 E-value=7.2 Score=33.76 Aligned_cols=123 Identities=20% Similarity=0.106 Sum_probs=85.1
Q ss_pred EEEcCcccHHHHHHHHHCCCceEEEEECChHHHHHHHHhcCccccccCCCCcEEEEEcccccc-----ccCCCeeEEEEc
Q 035593 82 GILGFGAGSAARLILDLYPEAVIHGWELDPSVIKVAREFFALEKLEKSYPDRLFVYVGNALKA-----SLKDGFSGILVD 156 (269)
Q Consensus 82 L~iG~G~G~~~~~l~~~~p~~~v~~vEidp~~~~~a~~~~~~~~~~~~~~~rv~~~~~D~~~~-----~~~~~yD~I~~d 156 (269)
|..=+|+=.+++.+.+ +.-++...|+.|+=....++.|.. +.++++..+|+... .++++=-+|++|
T Consensus 93 l~~YpGSP~lA~~llR--~qDRl~l~ELHp~D~~~L~~~f~~-------d~~vrv~~~DG~~~l~a~LPP~erRglVLID 163 (279)
T COG2961 93 LRYYPGSPLLARQLLR--EQDRLVLTELHPSDAPLLRNNFAG-------DRRVRVLRGDGFLALKAHLPPKERRGLVLID 163 (279)
T ss_pred cccCCCCHHHHHHHcc--hhceeeeeecCccHHHHHHHHhCC-------CcceEEEecCcHHHHhhhCCCCCcceEEEeC
Confidence 7777888899999887 677999999999999999999862 57999999999874 345567789998
Q ss_pred CCCCCCCCCC-CCcHHHHHHHHhhccCCcEEEEEecCCCccccccccchhHHHHHHHHHHHHHhcCceEEE
Q 035593 157 LFSKGSLLSE-LEDPNTWEKLRQCLRKGGRIMVNVGGSCVEAEDSRRDGKVVMEATLKAMHKVFGKKLYVL 226 (269)
Q Consensus 157 ~~~~~~~~~~-l~~~e~~~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~F~~~v~~~ 226 (269)
..-. .... -...+.+++..++. ++|+.+++..-.. ...++.+.+.|++.=-..+..+
T Consensus 164 PPfE--~~~eY~rvv~~l~~~~kRf-~~g~yaiWYPik~----------r~~~~~f~~~L~~~~i~kiL~i 221 (279)
T COG2961 164 PPFE--LKDEYQRVVEALAEAYKRF-ATGTYAIWYPIKD----------RRQIRRFLRALEALGIRKILQI 221 (279)
T ss_pred CCcc--cccHHHHHHHHHHHHHHhh-cCceEEEEEeecc----------hHHHHHHHHHHhhcCccceeee
Confidence 5422 1111 11134555555554 5799998774332 3357778888877633344444
No 348
>TIGR02822 adh_fam_2 zinc-binding alcohol dehydrogenase family protein. Members of this model form a distinct subset of the larger family of oxidoreductases that includes zinc-binding alcohol dehydrogenases and NADPH:quinone reductases (pfam00107). The gene neighborhood of members of this family is not conserved and it appears that no members are characterized. The sequence of the family includes 6 invariant cysteine residues and one invariant histidine. It appears that no member is characterized.
Probab=91.52 E-value=2.6 Score=37.71 Aligned_cols=91 Identities=15% Similarity=0.182 Sum_probs=58.5
Q ss_pred CCCCCcEEEEcCc-ccHHHHHHHHHCCCceEEEEECChHHHHHHHHhcCccccccCCCCcEEEEEccccccccCCCeeEE
Q 035593 75 ILPPGPIGILGFG-AGSAARLILDLYPEAVIHGWELDPSVIKVAREFFALEKLEKSYPDRLFVYVGNALKASLKDGFSGI 153 (269)
Q Consensus 75 l~~~~~VL~iG~G-~G~~~~~l~~~~p~~~v~~vEidp~~~~~a~~~~~~~~~~~~~~~rv~~~~~D~~~~~~~~~yD~I 153 (269)
+.+..+||+.|+| .|..+..+++.. +++|++++.+++-.+.|++. +.. .++. ..+ ...+.+|++
T Consensus 163 ~~~g~~VlV~G~g~iG~~a~~~a~~~-G~~vi~~~~~~~~~~~a~~~-Ga~----------~vi~--~~~-~~~~~~d~~ 227 (329)
T TIGR02822 163 LPPGGRLGLYGFGGSAHLTAQVALAQ-GATVHVMTRGAAARRLALAL-GAA----------SAGG--AYD-TPPEPLDAA 227 (329)
T ss_pred CCCCCEEEEEcCCHHHHHHHHHHHHC-CCeEEEEeCChHHHHHHHHh-CCc----------eecc--ccc-cCcccceEE
Confidence 4567899999975 444555666653 67899999999988888774 321 1111 001 112357876
Q ss_pred EEcCCCCCCCCCCCCcHHHHHHHHhhccCCcEEEEEe
Q 035593 154 LVDLFSKGSLLSELEDPNTWEKLRQCLRKGGRIMVNV 190 (269)
Q Consensus 154 ~~d~~~~~~~~~~l~~~e~~~~~~~~L~pgG~l~~~~ 190 (269)
+.... ..+.+....+.|+++|.+++--
T Consensus 228 i~~~~----------~~~~~~~~~~~l~~~G~~v~~G 254 (329)
T TIGR02822 228 ILFAP----------AGGLVPPALEALDRGGVLAVAG 254 (329)
T ss_pred EECCC----------cHHHHHHHHHhhCCCcEEEEEe
Confidence 63211 1257888889999999997643
No 349
>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed
Probab=91.51 E-value=1.8 Score=40.46 Aligned_cols=69 Identities=17% Similarity=0.148 Sum_probs=48.8
Q ss_pred CCCcEEEEcCcccHHHHHHHHHC--CCceEEEEECChHHHHHHHHhcCccccccCCCCcEEEEEcccccc-----ccCCC
Q 035593 77 PPGPIGILGFGAGSAARLILDLY--PEAVIHGWELDPSVIKVAREFFALEKLEKSYPDRLFVYVGNALKA-----SLKDG 149 (269)
Q Consensus 77 ~~~~VL~iG~G~G~~~~~l~~~~--p~~~v~~vEidp~~~~~a~~~~~~~~~~~~~~~rv~~~~~D~~~~-----~~~~~ 149 (269)
+..+|+.+|+| .++..+++.. .+.+++++|.||+.++..++.+ ..+.++.+|+.+. ..-++
T Consensus 230 ~~~~iiIiG~G--~~g~~l~~~L~~~~~~v~vid~~~~~~~~~~~~~----------~~~~~i~gd~~~~~~L~~~~~~~ 297 (453)
T PRK09496 230 PVKRVMIVGGG--NIGYYLAKLLEKEGYSVKLIERDPERAEELAEEL----------PNTLVLHGDGTDQELLEEEGIDE 297 (453)
T ss_pred CCCEEEEECCC--HHHHHHHHHHHhCCCeEEEEECCHHHHHHHHHHC----------CCCeEEECCCCCHHHHHhcCCcc
Confidence 46889999985 4444444332 3679999999999888777653 2367899999765 23467
Q ss_pred eeEEEEcC
Q 035593 150 FSGILVDL 157 (269)
Q Consensus 150 yD~I~~d~ 157 (269)
+|+|++..
T Consensus 298 a~~vi~~~ 305 (453)
T PRK09496 298 ADAFIALT 305 (453)
T ss_pred CCEEEECC
Confidence 89988643
No 350
>PRK06035 3-hydroxyacyl-CoA dehydrogenase; Validated
Probab=91.40 E-value=1.2 Score=39.30 Aligned_cols=102 Identities=17% Similarity=0.125 Sum_probs=59.5
Q ss_pred CcEEEEcCc--ccHHHHHHHHHCCCceEEEEECChHHHHHHHHhcC-----cccc---ccCC-------CCcEEEEEccc
Q 035593 79 GPIGILGFG--AGSAARLILDLYPEAVIHGWELDPSVIKVAREFFA-----LEKL---EKSY-------PDRLFVYVGNA 141 (269)
Q Consensus 79 ~~VL~iG~G--~G~~~~~l~~~~p~~~v~~vEidp~~~~~a~~~~~-----~~~~---~~~~-------~~rv~~~~~D~ 141 (269)
++|..||+| ++.++..+++ .+.+|+++|.+++.++.+++... +... +... ..+++.. .|.
T Consensus 4 ~~I~ViGaG~mG~~iA~~la~--~G~~V~l~d~~~~~l~~~~~~i~~~~~~l~~~~~~g~~~~~~~~~~~~~i~~~-~~~ 80 (291)
T PRK06035 4 KVIGVVGSGVMGQGIAQVFAR--TGYDVTIVDVSEEILKNAMELIESGPYGLRNLVEKGKMSEDEAKAIMARIRTS-TSY 80 (291)
T ss_pred cEEEEECccHHHHHHHHHHHh--cCCeEEEEeCCHHHHHHHHHHHHhhhhhHHHHHHcCCCCHHHHHHHHhCcEee-CCH
Confidence 579999999 4455555554 46799999999999987655321 1000 0000 0112221 121
Q ss_pred cccccCCCeeEEEEcCCCCCCCCCCCCcHHHHHHHHhhccCCcEEEEEec
Q 035593 142 LKASLKDGFSGILVDLFSKGSLLSELEDPNTWEKLRQCLRKGGRIMVNVG 191 (269)
Q Consensus 142 ~~~~~~~~yD~I~~d~~~~~~~~~~l~~~e~~~~~~~~L~pgG~l~~~~~ 191 (269)
..-...|+|+....... -...++++++.+.++++.+++.|..
T Consensus 81 ---~~~~~aDlVieav~e~~-----~~k~~~~~~l~~~~~~~~il~S~ts 122 (291)
T PRK06035 81 ---ESLSDADFIVEAVPEKL-----DLKRKVFAELERNVSPETIIASNTS 122 (291)
T ss_pred ---HHhCCCCEEEEcCcCcH-----HHHHHHHHHHHhhCCCCeEEEEcCC
Confidence 11245799987543221 1136788889888888887765553
No 351
>COG0677 WecC UDP-N-acetyl-D-mannosaminuronate dehydrogenase [Cell envelope biogenesis, outer membrane]
Probab=91.20 E-value=2 Score=39.61 Aligned_cols=111 Identities=11% Similarity=0.048 Sum_probs=65.3
Q ss_pred CCcEEEEcCcccHHHHHHHHHCCCceEEEEECChHHHHHHHHhcCccccccCCCCcEEE----EEccc-ccc-c---cCC
Q 035593 78 PGPIGILGFGAGSAARLILDLYPEAVIHGWELDPSVIKVAREFFALEKLEKSYPDRLFV----YVGNA-LKA-S---LKD 148 (269)
Q Consensus 78 ~~~VL~iG~G~G~~~~~l~~~~p~~~v~~vEidp~~~~~a~~~~~~~~~~~~~~~rv~~----~~~D~-~~~-~---~~~ 148 (269)
..+|-++|+|-=.++.++.-...+.+|+++|||+..++...+--..-. .+...- ....+ ... . .-.
T Consensus 9 ~~~I~ViGLGYVGLPlA~~fA~~G~~ViG~DIn~~~Vd~ln~G~~~i~-----e~~~~~~v~~~v~~g~lraTtd~~~l~ 83 (436)
T COG0677 9 SATIGVIGLGYVGLPLAAAFASAGFKVIGVDINQKKVDKLNRGESYIE-----EPDLDEVVKEAVESGKLRATTDPEELK 83 (436)
T ss_pred ceEEEEEccccccHHHHHHHHHcCCceEeEeCCHHHHHHHhCCcceee-----cCcHHHHHHHHHhcCCceEecChhhcc
Confidence 468999999977666665544457899999999998877543110000 010110 00000 011 1 123
Q ss_pred CeeEEEEcCCCCCCC---CCCCCcHHHHHHHHhhccCCcEEEEEecCC
Q 035593 149 GFSGILVDLFSKGSL---LSELEDPNTWEKLRQCLRKGGRIMVNVGGS 193 (269)
Q Consensus 149 ~yD~I~~d~~~~~~~---~~~l~~~e~~~~~~~~L~pgG~l~~~~~~~ 193 (269)
..|++++..+.+..- |..-+-...-+.+...|++|-.+++-...+
T Consensus 84 ~~dv~iI~VPTPl~~~~~pDls~v~~aa~sIa~~L~kG~LVIlEST~~ 131 (436)
T COG0677 84 ECDVFIICVPTPLKKYREPDLSYVESAARSIAPVLKKGDLVILESTTP 131 (436)
T ss_pred cCCEEEEEecCCcCCCCCCChHHHHHHHHHHHHhcCCCCEEEEecCCC
Confidence 789988876554221 222233577788889999988888876654
No 352
>PLN02514 cinnamyl-alcohol dehydrogenase
Probab=91.08 E-value=3.4 Score=37.41 Aligned_cols=94 Identities=17% Similarity=0.183 Sum_probs=56.8
Q ss_pred CCCCcEEEEcCc-ccHHHHHHHHHCCCceEEEEECChHHHHHHHHhcCccccccCCCCcEEEEEcccccc-ccCCCeeEE
Q 035593 76 LPPGPIGILGFG-AGSAARLILDLYPEAVIHGWELDPSVIKVAREFFALEKLEKSYPDRLFVYVGNALKA-SLKDGFSGI 153 (269)
Q Consensus 76 ~~~~~VL~iG~G-~G~~~~~l~~~~p~~~v~~vEidp~~~~~a~~~~~~~~~~~~~~~rv~~~~~D~~~~-~~~~~yD~I 153 (269)
.+..+||+.|+| .|..+..+++.. +.+++++..+++-.+.+.+.++... .+...+.... .....+|+|
T Consensus 179 ~~g~~vlV~G~G~vG~~av~~Ak~~-G~~vi~~~~~~~~~~~~~~~~Ga~~---------~i~~~~~~~~~~~~~~~D~v 248 (357)
T PLN02514 179 QSGLRGGILGLGGVGHMGVKIAKAM-GHHVTVISSSDKKREEALEHLGADD---------YLVSSDAAEMQEAADSLDYI 248 (357)
T ss_pred CCCCeEEEEcccHHHHHHHHHHHHC-CCeEEEEeCCHHHHHHHHHhcCCcE---------EecCCChHHHHHhcCCCcEE
Confidence 467889999764 445555666653 6788889888877666666555311 1111111112 112358888
Q ss_pred EEcCCCCCCCCCCCCcHHHHHHHHhhccCCcEEEEE
Q 035593 154 LVDLFSKGSLLSELEDPNTWEKLRQCLRKGGRIMVN 189 (269)
Q Consensus 154 ~~d~~~~~~~~~~l~~~e~~~~~~~~L~pgG~l~~~ 189 (269)
+ |... ....++.+.+.|+++|.++..
T Consensus 249 i-d~~g---------~~~~~~~~~~~l~~~G~iv~~ 274 (357)
T PLN02514 249 I-DTVP---------VFHPLEPYLSLLKLDGKLILM 274 (357)
T ss_pred E-ECCC---------chHHHHHHHHHhccCCEEEEE
Confidence 7 3321 134677788899999988764
No 353
>PRK11064 wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Provisional
Probab=90.97 E-value=2.3 Score=39.68 Aligned_cols=105 Identities=12% Similarity=0.137 Sum_probs=56.4
Q ss_pred CcEEEEcCcc--cHHHHHHHHHCCCceEEEEECChHHHHHHHHhcCccccccCCCCcEEE-----EEcccccc-ccCCCe
Q 035593 79 GPIGILGFGA--GSAARLILDLYPEAVIHGWELDPSVIKVAREFFALEKLEKSYPDRLFV-----YVGNALKA-SLKDGF 150 (269)
Q Consensus 79 ~~VL~iG~G~--G~~~~~l~~~~p~~~v~~vEidp~~~~~a~~~~~~~~~~~~~~~rv~~-----~~~D~~~~-~~~~~y 150 (269)
.+|..||+|. +.++..|++ .+.+|+++|+|++.++..+.-. .+- ..+.+.- +....... ...+..
T Consensus 4 ~kI~VIGlG~~G~~~A~~La~--~G~~V~~~D~~~~~v~~l~~g~-~~~----~e~~l~~~l~~~~~~g~l~~~~~~~~a 76 (415)
T PRK11064 4 ETISVIGLGYIGLPTAAAFAS--RQKQVIGVDINQHAVDTINRGE-IHI----VEPDLDMVVKTAVEGGYLRATTTPEPA 76 (415)
T ss_pred cEEEEECcchhhHHHHHHHHh--CCCEEEEEeCCHHHHHHHHCCC-CCc----CCCCHHHHHHHHhhcCceeeecccccC
Confidence 5799999994 444455554 3679999999999888643211 110 0011100 00000111 112368
Q ss_pred eEEEEcCCCCCCC---CCCCCcHHHHHHHHhhccCCcEEEEEe
Q 035593 151 SGILVDLFSKGSL---LSELEDPNTWEKLRQCLRKGGRIMVNV 190 (269)
Q Consensus 151 D~I~~d~~~~~~~---~~~l~~~e~~~~~~~~L~pgG~l~~~~ 190 (269)
|+||+....+... +..-...+..+.+.+.|++|-+++...
T Consensus 77 Dvvii~vptp~~~~~~~dl~~v~~~~~~i~~~l~~g~iVI~~S 119 (415)
T PRK11064 77 DAFLIAVPTPFKGDHEPDLTYVEAAAKSIAPVLKKGDLVILES 119 (415)
T ss_pred CEEEEEcCCCCCCCCCcChHHHHHHHHHHHHhCCCCCEEEEeC
Confidence 9999887654211 111122456678888888865555443
No 354
>cd05278 FDH_like Formaldehyde dehydrogenases. Formaldehyde dehydrogenase (FDH) is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. Formaldehyde dehydrogenase (aka ADH3) may be the ancestral form of alcohol dehydrogenase, which evolved to detoxify formaldehyde. This CD contains glutathione dependant FDH, glutathione independent FDH, and related alcohol dehydrogenases. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. Unlike typical FDH, Pseudomonas putida aldehyde-dismutating FDH (PFDH) is glutathione-independent. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typicall
Probab=90.88 E-value=2 Score=38.34 Aligned_cols=96 Identities=21% Similarity=0.288 Sum_probs=57.3
Q ss_pred CCCCcEEEEcCc-ccHHHHHHHHHCCCceEEEEECChHHHHHHHHhcCccccccCCCCcEEEEEccccc----cccCCCe
Q 035593 76 LPPGPIGILGFG-AGSAARLILDLYPEAVIHGWELDPSVIKVAREFFALEKLEKSYPDRLFVYVGNALK----ASLKDGF 150 (269)
Q Consensus 76 ~~~~~VL~iG~G-~G~~~~~l~~~~p~~~v~~vEidp~~~~~a~~~~~~~~~~~~~~~rv~~~~~D~~~----~~~~~~y 150 (269)
.+..+||+.|+| .|..+..+++.....++.+++.++...+.+++. +.. .-+.....+..+ ....+.+
T Consensus 166 ~~~~~VlI~g~g~vg~~~iqlak~~g~~~v~~~~~~~~~~~~~~~~-g~~-------~vi~~~~~~~~~~i~~~~~~~~~ 237 (347)
T cd05278 166 KPGSTVAVIGAGPVGLCAVAGARLLGAARIIAVDSNPERLDLAKEA-GAT-------DIINPKNGDIVEQILELTGGRGV 237 (347)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEeCCHHHHHHHHHh-CCc-------EEEcCCcchHHHHHHHHcCCCCC
Confidence 357788887654 355556666654324788999988888877753 211 011111111111 1233579
Q ss_pred eEEEEcCCCCCCCCCCCCcHHHHHHHHhhccCCcEEEEE
Q 035593 151 SGILVDLFSKGSLLSELEDPNTWEKLRQCLRKGGRIMVN 189 (269)
Q Consensus 151 D~I~~d~~~~~~~~~~l~~~e~~~~~~~~L~pgG~l~~~ 189 (269)
|+|+ |... ....+..+.++|+++|.++.-
T Consensus 238 d~vl-d~~g---------~~~~~~~~~~~l~~~G~~v~~ 266 (347)
T cd05278 238 DCVI-EAVG---------FEETFEQAVKVVRPGGTIANV 266 (347)
T ss_pred cEEE-EccC---------CHHHHHHHHHHhhcCCEEEEE
Confidence 9887 3321 135788889999999988753
No 355
>PRK07066 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=90.87 E-value=0.93 Score=40.84 Aligned_cols=105 Identities=14% Similarity=0.118 Sum_probs=62.5
Q ss_pred CCcEEEEcCc--ccHHHHHHHHHCCCceEEEEECChHHHHHHHHhcC--cccc---c---cCCCCcEEEEEccccccccC
Q 035593 78 PGPIGILGFG--AGSAARLILDLYPEAVIHGWELDPSVIKVAREFFA--LEKL---E---KSYPDRLFVYVGNALKASLK 147 (269)
Q Consensus 78 ~~~VL~iG~G--~G~~~~~l~~~~p~~~v~~vEidp~~~~~a~~~~~--~~~~---~---~~~~~rv~~~~~D~~~~~~~ 147 (269)
-++|.+||+| +..++..++. .+.+|+.+|++|+.++.++.+.. +..+ + .....++++.. |.. ..-
T Consensus 7 i~~VaVIGaG~MG~giA~~~a~--aG~~V~l~D~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~-~l~--~av 81 (321)
T PRK07066 7 IKTFAAIGSGVIGSGWVARALA--HGLDVVAWDPAPGAEAALRANVANAWPALERQGLAPGASPARLRFVA-TIE--ACV 81 (321)
T ss_pred CCEEEEECcCHHHHHHHHHHHh--CCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCChhhHHhhceecC-CHH--HHh
Confidence 4689999998 4445555554 58999999999998877655431 0000 0 00012333221 111 122
Q ss_pred CCeeEEEEcCCCCCCCCCCCCcHHHHHHHHhhccCCcEEEEEecC
Q 035593 148 DGFSGILVDLFSKGSLLSELEDPNTWEKLRQCLRKGGRIMVNVGG 192 (269)
Q Consensus 148 ~~yD~I~~d~~~~~~~~~~l~~~e~~~~~~~~L~pgG~l~~~~~~ 192 (269)
...|+|+-...... -...++|+.+-+.++|+-+|..|..+
T Consensus 82 ~~aDlViEavpE~l-----~vK~~lf~~l~~~~~~~aIlaSnTS~ 121 (321)
T PRK07066 82 ADADFIQESAPERE-----ALKLELHERISRAAKPDAIIASSTSG 121 (321)
T ss_pred cCCCEEEECCcCCH-----HHHHHHHHHHHHhCCCCeEEEECCCc
Confidence 56788886433221 11358889999999998888777753
No 356
>PF01408 GFO_IDH_MocA: Oxidoreductase family, NAD-binding Rossmann fold; InterPro: IPR000683 This group of enzymes utilise NADP or NAD, and is known as the GFO/IDH/MOCA family in UniProtKB/Swiss-Prot. GFO is a glucose--fructose oxidoreductase, which converts D-glucose and D-fructose into D-gluconolactone and D-glucitol in the sorbitol-gluconate pathway. MOCA is a rhizopine catabolism protein which may catalyse the NADH-dependent dehydrogenase reaction involved in rhizopine catabolism. Other proteins belonging to this family include Gal80, a negative regulator for the expression of lactose and galactose metabolic genes; and several hypothetical proteins from yeast, Escherichia coli and Bacillus subtilis. The oxidoreductase, N-terminal domain is almost always associated with the oxidoreductase, C-terminal domain (see IPR004104 from INTERPRO).; GO: 0016491 oxidoreductase activity; PDB: 1LC0_A 1LC3_A 1GCU_A 3IP3_E 3CEA_C 3EVN_A 3NTQ_A 3NTR_B 3NT5_A 3MZ0_A ....
Probab=90.87 E-value=4.8 Score=29.93 Aligned_cols=87 Identities=16% Similarity=0.256 Sum_probs=54.8
Q ss_pred cEEEEcCcccHHH--HHHHHHCCCceEE-EEECChHHHHHHHHhcCccccccCCCCcEEEEEccccccccCCCeeEEEEc
Q 035593 80 PIGILGFGAGSAA--RLILDLYPEAVIH-GWELDPSVIKVAREFFALEKLEKSYPDRLFVYVGNALKASLKDGFSGILVD 156 (269)
Q Consensus 80 ~VL~iG~G~G~~~--~~l~~~~p~~~v~-~vEidp~~~~~a~~~~~~~~~~~~~~~rv~~~~~D~~~~~~~~~yD~I~~d 156 (269)
+|..||+|...-. ..+.+..++.+++ ++|.+++-.+.+.+.++. . ...|..+.......|+|++.
T Consensus 2 ~v~iiG~G~~g~~~~~~~~~~~~~~~v~~v~d~~~~~~~~~~~~~~~-----------~-~~~~~~~ll~~~~~D~V~I~ 69 (120)
T PF01408_consen 2 RVGIIGAGSIGRRHLRALLRSSPDFEVVAVCDPDPERAEAFAEKYGI-----------P-VYTDLEELLADEDVDAVIIA 69 (120)
T ss_dssp EEEEESTSHHHHHHHHHHHHTTTTEEEEEEECSSHHHHHHHHHHTTS-----------E-EESSHHHHHHHTTESEEEEE
T ss_pred EEEEECCcHHHHHHHHHHHhcCCCcEEEEEEeCCHHHHHHHHHHhcc-----------c-chhHHHHHHHhhcCCEEEEe
Confidence 6899999765333 2334433677765 689999988887776653 2 44566666444589999986
Q ss_pred CCCCCCCCCCCCcHHHHHHHHhhccCCcEEEE
Q 035593 157 LFSKGSLLSELEDPNTWEKLRQCLRKGGRIMV 188 (269)
Q Consensus 157 ~~~~~~~~~~l~~~e~~~~~~~~L~pgG~l~~ 188 (269)
... ..-++.+...|+-|--+++
T Consensus 70 tp~----------~~h~~~~~~~l~~g~~v~~ 91 (120)
T PF01408_consen 70 TPP----------SSHAEIAKKALEAGKHVLV 91 (120)
T ss_dssp SSG----------GGHHHHHHHHHHTTSEEEE
T ss_pred cCC----------cchHHHHHHHHHcCCEEEE
Confidence 443 2244555556666554444
No 357
>PRK06130 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=90.84 E-value=1.3 Score=39.40 Aligned_cols=105 Identities=13% Similarity=0.107 Sum_probs=59.8
Q ss_pred CCcEEEEcCc--ccHHHHHHHHHCCCceEEEEECChHHHHHHHHhc----Cc-ccccc--CCCCcEEEEEccccccccCC
Q 035593 78 PGPIGILGFG--AGSAARLILDLYPEAVIHGWELDPSVIKVAREFF----AL-EKLEK--SYPDRLFVYVGNALKASLKD 148 (269)
Q Consensus 78 ~~~VL~iG~G--~G~~~~~l~~~~p~~~v~~vEidp~~~~~a~~~~----~~-~~~~~--~~~~rv~~~~~D~~~~~~~~ 148 (269)
-++|..||+| ++.++..+++ .+.+|+++|.+++.++.+++.. +. ..... ....++++ ..|.. ..-+
T Consensus 4 ~~~I~vIGaG~mG~~iA~~l~~--~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~-~~~~~--~~~~ 78 (311)
T PRK06130 4 IQNLAIIGAGTMGSGIAALFAR--KGLQVVLIDVMEGALERARGVIERALGVYAPLGIASAGMGRIRM-EAGLA--AAVS 78 (311)
T ss_pred ccEEEEECCCHHHHHHHHHHHh--CCCeEEEEECCHHHHHHHHHHHHHHHHHhhhcccHHHHhhceEE-eCCHH--HHhc
Confidence 4679999999 4555566654 4679999999999988877642 11 00000 00011221 12211 1134
Q ss_pred CeeEEEEcCCCCCCCCCCCCcHHHHHHHHhhccCCcEEEEEecC
Q 035593 149 GFSGILVDLFSKGSLLSELEDPNTWEKLRQCLRKGGRIMVNVGG 192 (269)
Q Consensus 149 ~yD~I~~d~~~~~~~~~~l~~~e~~~~~~~~L~pgG~l~~~~~~ 192 (269)
..|+|+....... -...+++..+...++++-+++.+..+
T Consensus 79 ~aDlVi~av~~~~-----~~~~~v~~~l~~~~~~~~ii~s~tsg 117 (311)
T PRK06130 79 GADLVIEAVPEKL-----ELKRDVFARLDGLCDPDTIFATNTSG 117 (311)
T ss_pred cCCEEEEeccCcH-----HHHHHHHHHHHHhCCCCcEEEECCCC
Confidence 6799997544321 01356888888777776666555543
No 358
>PRK08655 prephenate dehydrogenase; Provisional
Probab=90.78 E-value=8.5 Score=36.21 Aligned_cols=88 Identities=16% Similarity=0.264 Sum_probs=51.1
Q ss_pred cEEEEc-Cc-c-cHHHHHHHHHCCCceEEEEECChHHH-HHHHHhcCccccccCCCCcEEEEEccccccccCCCeeEEEE
Q 035593 80 PIGILG-FG-A-GSAARLILDLYPEAVIHGWELDPSVI-KVAREFFALEKLEKSYPDRLFVYVGNALKASLKDGFSGILV 155 (269)
Q Consensus 80 ~VL~iG-~G-~-G~~~~~l~~~~p~~~v~~vEidp~~~-~~a~~~~~~~~~~~~~~~rv~~~~~D~~~~~~~~~yD~I~~ 155 (269)
+|+.|| +| . ++++..+.+ .+.+|++++.+++.. +.+++ .+ +. ...|.. ..-...|+|++
T Consensus 2 kI~IIGG~G~mG~slA~~L~~--~G~~V~v~~r~~~~~~~~a~~-~g-----------v~-~~~~~~--e~~~~aDvVIl 64 (437)
T PRK08655 2 KISIIGGTGGLGKWFARFLKE--KGFEVIVTGRDPKKGKEVAKE-LG-----------VE-YANDNI--DAAKDADIVII 64 (437)
T ss_pred EEEEEecCCHHHHHHHHHHHH--CCCEEEEEECChHHHHHHHHH-cC-----------Ce-eccCHH--HHhccCCEEEE
Confidence 688997 45 2 344455544 356899999998775 33333 22 11 111211 11245799998
Q ss_pred cCCCCCCCCCCCCcHHHHHHHHhhccCCcEEEEEecC
Q 035593 156 DLFSKGSLLSELEDPNTWEKLRQCLRKGGRIMVNVGG 192 (269)
Q Consensus 156 d~~~~~~~~~~l~~~e~~~~~~~~L~pgG~l~~~~~~ 192 (269)
..... ...+.++.+...++++. +++++.+
T Consensus 65 avp~~-------~~~~vl~~l~~~l~~~~-iViDvsS 93 (437)
T PRK08655 65 SVPIN-------VTEDVIKEVAPHVKEGS-LLMDVTS 93 (437)
T ss_pred ecCHH-------HHHHHHHHHHhhCCCCC-EEEEccc
Confidence 54322 13578888888887755 5566654
No 359
>PLN02827 Alcohol dehydrogenase-like
Probab=90.64 E-value=1.6 Score=40.02 Aligned_cols=96 Identities=17% Similarity=0.174 Sum_probs=57.8
Q ss_pred CCCCCcEEEEcCc-ccHHHHHHHHHCCCc-eEEEEECChHHHHHHHHhcCccccccCCCCcEEEEE--cccccc---ccC
Q 035593 75 ILPPGPIGILGFG-AGSAARLILDLYPEA-VIHGWELDPSVIKVAREFFALEKLEKSYPDRLFVYV--GNALKA---SLK 147 (269)
Q Consensus 75 l~~~~~VL~iG~G-~G~~~~~l~~~~p~~-~v~~vEidp~~~~~a~~~~~~~~~~~~~~~rv~~~~--~D~~~~---~~~ 147 (269)
+.+..+||+.|+| -|.++..+++.. +. .|++++.+++-.+.|++. +... -+.... .+.... ...
T Consensus 191 ~~~g~~VlV~G~G~vG~~~iqlak~~-G~~~vi~~~~~~~~~~~a~~l-Ga~~-------~i~~~~~~~~~~~~v~~~~~ 261 (378)
T PLN02827 191 VSKGSSVVIFGLGTVGLSVAQGAKLR-GASQIIGVDINPEKAEKAKTF-GVTD-------FINPNDLSEPIQQVIKRMTG 261 (378)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHc-CCCeEEEECCCHHHHHHHHHc-CCcE-------EEcccccchHHHHHHHHHhC
Confidence 4568899999865 344445556654 55 689999999988888653 4211 011100 111111 112
Q ss_pred CCeeEEEEcCCCCCCCCCCCCcHHHHHHHHhhccCC-cEEEEE
Q 035593 148 DGFSGILVDLFSKGSLLSELEDPNTWEKLRQCLRKG-GRIMVN 189 (269)
Q Consensus 148 ~~yD~I~~d~~~~~~~~~~l~~~e~~~~~~~~L~pg-G~l~~~ 189 (269)
+.+|+|+ |... ....+..+.+.|++| |.+++.
T Consensus 262 ~g~d~vi-d~~G---------~~~~~~~~l~~l~~g~G~iv~~ 294 (378)
T PLN02827 262 GGADYSF-ECVG---------DTGIATTALQSCSDGWGLTVTL 294 (378)
T ss_pred CCCCEEE-ECCC---------ChHHHHHHHHhhccCCCEEEEE
Confidence 3689887 4322 234677788889998 998764
No 360
>PRK12921 2-dehydropantoate 2-reductase; Provisional
Probab=90.59 E-value=2.2 Score=37.59 Aligned_cols=95 Identities=17% Similarity=0.159 Sum_probs=53.1
Q ss_pred cEEEEcCccc--HHHHHHHHHCCCceEEEEECChHHHHHHHHhcCccccccCCCCcEEEEEcccc-cc-ccCCCeeEEEE
Q 035593 80 PIGILGFGAG--SAARLILDLYPEAVIHGWELDPSVIKVAREFFALEKLEKSYPDRLFVYVGNAL-KA-SLKDGFSGILV 155 (269)
Q Consensus 80 ~VL~iG~G~G--~~~~~l~~~~p~~~v~~vEidp~~~~~a~~~~~~~~~~~~~~~rv~~~~~D~~-~~-~~~~~yD~I~~ 155 (269)
+|+.||+|.- .++..|.+ .+.+|+.++. ++.++..++. ++.-.. ......+ ..... +. .....+|+|++
T Consensus 2 kI~IiG~G~iG~~~a~~L~~--~g~~V~~~~r-~~~~~~~~~~-g~~~~~--~~~~~~~-~~~~~~~~~~~~~~~d~vil 74 (305)
T PRK12921 2 RIAVVGAGAVGGTFGGRLLE--AGRDVTFLVR-PKRAKALRER-GLVIRS--DHGDAVV-PGPVITDPEELTGPFDLVIL 74 (305)
T ss_pred eEEEECCCHHHHHHHHHHHH--CCCceEEEec-HHHHHHHHhC-CeEEEe--CCCeEEe-cceeecCHHHccCCCCEEEE
Confidence 6899999843 34445544 3568999998 6666655542 221100 0011111 00011 11 12367999998
Q ss_pred cCCCCCCCCCCCCcHHHHHHHHhhccCCcEEEE
Q 035593 156 DLFSKGSLLSELEDPNTWEKLRQCLRKGGRIMV 188 (269)
Q Consensus 156 d~~~~~~~~~~l~~~e~~~~~~~~L~pgG~l~~ 188 (269)
..... ..++.++.+...++++.+++.
T Consensus 75 avk~~-------~~~~~~~~l~~~~~~~~~ii~ 100 (305)
T PRK12921 75 AVKAY-------QLDAAIPDLKPLVGEDTVIIP 100 (305)
T ss_pred Eeccc-------CHHHHHHHHHhhcCCCCEEEE
Confidence 65432 257888999998988766553
No 361
>PLN02545 3-hydroxybutyryl-CoA dehydrogenase
Probab=90.59 E-value=0.95 Score=40.01 Aligned_cols=105 Identities=14% Similarity=0.153 Sum_probs=61.8
Q ss_pred CCcEEEEcCc--ccHHHHHHHHHCCCceEEEEECChHHHHHHHHhcC-----ccccccCCC-------CcEEEEEccccc
Q 035593 78 PGPIGILGFG--AGSAARLILDLYPEAVIHGWELDPSVIKVAREFFA-----LEKLEKSYP-------DRLFVYVGNALK 143 (269)
Q Consensus 78 ~~~VL~iG~G--~G~~~~~l~~~~p~~~v~~vEidp~~~~~a~~~~~-----~~~~~~~~~-------~rv~~~~~D~~~ 143 (269)
-++|..||+| +..++..++. .+.+|+++|.+++.++.+++.+. +...+.... .+++ ...+.
T Consensus 4 ~~~V~vIG~G~mG~~iA~~l~~--~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~-~~~~~-- 78 (295)
T PLN02545 4 IKKVGVVGAGQMGSGIAQLAAA--AGMDVWLLDSDPAALSRGLDSISSSLARLVKKGKMSQEEADATLGRIR-CTTNL-- 78 (295)
T ss_pred cCEEEEECCCHHHHHHHHHHHh--cCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhceE-eeCCH--
Confidence 3579999998 4455555555 47899999999999876654321 000000000 0111 11222
Q ss_pred cccCCCeeEEEEcCCCCCCCCCCCCcHHHHHHHHhhccCCcEEEEEecCC
Q 035593 144 ASLKDGFSGILVDLFSKGSLLSELEDPNTWEKLRQCLRKGGRIMVNVGGS 193 (269)
Q Consensus 144 ~~~~~~yD~I~~d~~~~~~~~~~l~~~e~~~~~~~~L~pgG~l~~~~~~~ 193 (269)
..-...|+|+..+..... ....+|+++.+.++++.+++.|..+.
T Consensus 79 -~~~~~aD~Vieav~e~~~-----~k~~v~~~l~~~~~~~~il~s~tS~i 122 (295)
T PLN02545 79 -EELRDADFIIEAIVESED-----LKKKLFSELDRICKPSAILASNTSSI 122 (295)
T ss_pred -HHhCCCCEEEEcCccCHH-----HHHHHHHHHHhhCCCCcEEEECCCCC
Confidence 122457999976543211 13578888888899988877777554
No 362
>TIGR02356 adenyl_thiF thiazole biosynthesis adenylyltransferase ThiF, E. coli subfamily. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with the Escherichia. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the more widely distributed clade of ThiF proteins such found in E. coli.
Probab=90.56 E-value=1.5 Score=36.61 Aligned_cols=33 Identities=27% Similarity=0.196 Sum_probs=22.8
Q ss_pred CCCcEEEEcCcc-cH-HHHHHHHHCCCceEEEEECC
Q 035593 77 PPGPIGILGFGA-GS-AARLILDLYPEAVIHGWELD 110 (269)
Q Consensus 77 ~~~~VL~iG~G~-G~-~~~~l~~~~p~~~v~~vEid 110 (269)
...+||.+|||+ |+ ++..|.+ ..-.+++.+|.|
T Consensus 20 ~~~~VlviG~GglGs~ia~~La~-~Gv~~i~lvD~d 54 (202)
T TIGR02356 20 LNSHVLIIGAGGLGSPAALYLAG-AGVGTIVIVDDD 54 (202)
T ss_pred cCCCEEEECCCHHHHHHHHHHHH-cCCCeEEEecCC
Confidence 467999999983 44 3444444 333589999988
No 363
>KOG2671 consensus Putative RNA methylase [Replication, recombination and repair]
Probab=90.46 E-value=0.4 Score=43.23 Aligned_cols=113 Identities=16% Similarity=0.082 Sum_probs=77.7
Q ss_pred CCCCCCcEEEEcCcccHHHHHHHHHCCCceEEEEECChHHHHHHH-------HhcCccccccCCCCcEEEEEcccccc--
Q 035593 74 PILPPGPIGILGFGAGSAARLILDLYPEAVIHGWELDPSVIKVAR-------EFFALEKLEKSYPDRLFVYVGNALKA-- 144 (269)
Q Consensus 74 ~l~~~~~VL~iG~G~G~~~~~l~~~~p~~~v~~vEidp~~~~~a~-------~~~~~~~~~~~~~~rv~~~~~D~~~~-- 144 (269)
.+.|++-|+|==.|||++....++ + ++.|.+-|||-.+++..| .+|.... + .+--+.+..+|...-
T Consensus 205 mv~pGdivyDPFVGTGslLvsaa~-F-Ga~viGtDIDyr~vragrg~~~si~aNFkQYg--~-~~~fldvl~~D~sn~~~ 279 (421)
T KOG2671|consen 205 MVKPGDIVYDPFVGTGSLLVSAAH-F-GAYVIGTDIDYRTVRAGRGEDESIKANFKQYG--S-SSQFLDVLTADFSNPPL 279 (421)
T ss_pred ccCCCCEEecCccccCceeeehhh-h-cceeeccccchheeecccCCCcchhHhHHHhC--C-cchhhheeeecccCcch
Confidence 456788899988899998887776 3 789999999999988532 2221111 0 123477888887764
Q ss_pred ccCCCeeEEEEcCCCCCC-----------C--------CCCC-----Cc-----HHHHHHHHhhccCCcEEEEEec
Q 035593 145 SLKDGFSGILVDLFSKGS-----------L--------LSEL-----ED-----PNTWEKLRQCLRKGGRIMVNVG 191 (269)
Q Consensus 145 ~~~~~yD~I~~d~~~~~~-----------~--------~~~l-----~~-----~e~~~~~~~~L~pgG~l~~~~~ 191 (269)
..+..||+|++|.+-+.. . ..|. +. -+.++-..++|..||+++++..
T Consensus 280 rsn~~fDaIvcDPPYGVRe~~rk~~~k~~~r~~~~~~~~~h~p~~~~ysl~~~v~dll~fss~~L~~ggrlv~w~p 355 (421)
T KOG2671|consen 280 RSNLKFDAIVCDPPYGVREGARKTGKKKSVRTTEESSRGDHYPSTEQYSLSSLVYDLLCFSSRRLVDGGRLVFWLP 355 (421)
T ss_pred hhcceeeEEEeCCCcchhhhhhhhcccCcccCcccccccccCCccchhHHHHHHhhHHHhhHhhhhcCceEEEecC
Confidence 567899999999653310 0 0111 11 2567778899999999999775
No 364
>PF03807 F420_oxidored: NADP oxidoreductase coenzyme F420-dependent; InterPro: IPR004455 The function of F420-dependent NADP reductase is the transfer of electrons from reduced coenzyme F420 into an electron transport chain. It catalyses the reduction of F420 with NADP(+) and the reduction of NADP(+) with F420H(2).; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2IZZ_B 2GR9_B 2GRA_B 2GER_C 2AMF_E 2AHR_C 2VQ3_B 2VNS_B 2RCY_D 2YJZ_D ....
Probab=90.44 E-value=1 Score=32.40 Aligned_cols=87 Identities=16% Similarity=0.190 Sum_probs=48.6
Q ss_pred cEEEEcCc--ccHHHHHHHHHC-CCceEEEE-ECChHHHHHHHHhcCccccccCCCCcEEEEEccccccccCCCeeEEEE
Q 035593 80 PIGILGFG--AGSAARLILDLY-PEAVIHGW-ELDPSVIKVAREFFALEKLEKSYPDRLFVYVGNALKASLKDGFSGILV 155 (269)
Q Consensus 80 ~VL~iG~G--~G~~~~~l~~~~-p~~~v~~v-Eidp~~~~~a~~~~~~~~~~~~~~~rv~~~~~D~~~~~~~~~yD~I~~ 155 (269)
+|..||+| +..+++.+.+.. ...+|..+ +.+++-++..++.++ +.+...+..+. -+..|+|++
T Consensus 1 kI~iIG~G~mg~al~~~l~~~g~~~~~v~~~~~r~~~~~~~~~~~~~-----------~~~~~~~~~~~--~~~advvil 67 (96)
T PF03807_consen 1 KIGIIGAGNMGSALARGLLASGIKPHEVIIVSSRSPEKAAELAKEYG-----------VQATADDNEEA--AQEADVVIL 67 (96)
T ss_dssp EEEEESTSHHHHHHHHHHHHTTS-GGEEEEEEESSHHHHHHHHHHCT-----------TEEESEEHHHH--HHHTSEEEE
T ss_pred CEEEECCCHHHHHHHHHHHHCCCCceeEEeeccCcHHHHHHHHHhhc-----------cccccCChHHh--hccCCEEEE
Confidence 46778766 233334444421 22688855 999999888777654 22222222222 236899998
Q ss_pred cCCCCCCCCCCCCcHHHHHHHHhhccCCcEEE
Q 035593 156 DLFSKGSLLSELEDPNTWEKLRQCLRKGGRIM 187 (269)
Q Consensus 156 d~~~~~~~~~~l~~~e~~~~~~~~L~pgG~l~ 187 (269)
..... ...+.++.+ ..+.++.+++
T Consensus 68 av~p~-------~~~~v~~~i-~~~~~~~~vi 91 (96)
T PF03807_consen 68 AVKPQ-------QLPEVLSEI-PHLLKGKLVI 91 (96)
T ss_dssp -S-GG-------GHHHHHHHH-HHHHTTSEEE
T ss_pred EECHH-------HHHHHHHHH-hhccCCCEEE
Confidence 54332 145777777 5666655543
No 365
>cd05285 sorbitol_DH Sorbitol dehydrogenase. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit. Aldose reductase catalyzes the NADP(H)-dependent conversion of glucose to sorbital, and SDH uses NAD(H) in the conversion of sorbitol to fructose. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.
Probab=90.42 E-value=2.2 Score=38.18 Aligned_cols=98 Identities=16% Similarity=0.213 Sum_probs=60.5
Q ss_pred CCCCCCcEEEEcCcc-cHHHHHHHHHCCCce-EEEEECChHHHHHHHHhcCccccccCCCCcEEEEEcc----cc---cc
Q 035593 74 PILPPGPIGILGFGA-GSAARLILDLYPEAV-IHGWELDPSVIKVAREFFALEKLEKSYPDRLFVYVGN----AL---KA 144 (269)
Q Consensus 74 ~l~~~~~VL~iG~G~-G~~~~~l~~~~p~~~-v~~vEidp~~~~~a~~~~~~~~~~~~~~~rv~~~~~D----~~---~~ 144 (269)
.+.+..+||+.|+|+ |..+..+++.. +.+ |+++..+++-.+.+++ ++... -+.....+ .. +.
T Consensus 159 ~~~~g~~vlI~g~g~vG~~a~~lak~~-G~~~v~~~~~~~~~~~~~~~-~g~~~-------vi~~~~~~~~~~~~~~~~~ 229 (343)
T cd05285 159 GVRPGDTVLVFGAGPIGLLTAAVAKAF-GATKVVVTDIDPSRLEFAKE-LGATH-------TVNVRTEDTPESAEKIAEL 229 (343)
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHc-CCcEEEEECCCHHHHHHHHH-cCCcE-------EeccccccchhHHHHHHHH
Confidence 355788999987654 55666666654 555 9999999888888765 33211 01111111 11 12
Q ss_pred ccCCCeeEEEEcCCCCCCCCCCCCcHHHHHHHHhhccCCcEEEEEe
Q 035593 145 SLKDGFSGILVDLFSKGSLLSELEDPNTWEKLRQCLRKGGRIMVNV 190 (269)
Q Consensus 145 ~~~~~yD~I~~d~~~~~~~~~~l~~~e~~~~~~~~L~pgG~l~~~~ 190 (269)
...+.+|+|+-. .. ....+..+.+.|+++|.++.-.
T Consensus 230 ~~~~~~d~vld~-~g---------~~~~~~~~~~~l~~~G~~v~~g 265 (343)
T cd05285 230 LGGKGPDVVIEC-TG---------AESCIQTAIYATRPGGTVVLVG 265 (343)
T ss_pred hCCCCCCEEEEC-CC---------CHHHHHHHHHHhhcCCEEEEEc
Confidence 334569999842 21 1347888899999999987543
No 366
>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed
Probab=90.38 E-value=3.2 Score=38.77 Aligned_cols=89 Identities=11% Similarity=0.063 Sum_probs=55.8
Q ss_pred cEEEEcCcccHHHHHHHHHC--CCceEEEEECChHHHHHHHHhcCccccccCCCCcEEEEEcccccc-----ccCCCeeE
Q 035593 80 PIGILGFGAGSAARLILDLY--PEAVIHGWELDPSVIKVAREFFALEKLEKSYPDRLFVYVGNALKA-----SLKDGFSG 152 (269)
Q Consensus 80 ~VL~iG~G~G~~~~~l~~~~--p~~~v~~vEidp~~~~~a~~~~~~~~~~~~~~~rv~~~~~D~~~~-----~~~~~yD~ 152 (269)
+|+.+|+ |.++..+.+.. .+..|+++|.|++.++.+++.. .++++.+|+.+. ..-+.+|.
T Consensus 2 ~viIiG~--G~ig~~~a~~L~~~g~~v~vid~~~~~~~~~~~~~-----------~~~~~~gd~~~~~~l~~~~~~~a~~ 68 (453)
T PRK09496 2 KIIIVGA--GQVGYTLAENLSGENNDVTVIDTDEERLRRLQDRL-----------DVRTVVGNGSSPDVLREAGAEDADL 68 (453)
T ss_pred EEEEECC--CHHHHHHHHHHHhCCCcEEEEECCHHHHHHHHhhc-----------CEEEEEeCCCCHHHHHHcCCCcCCE
Confidence 6888887 56665555532 3679999999999887766532 378888998764 22467998
Q ss_pred EEEcCCCCCCCCCCCCcHHHHHHHHhhccCCcEEEE
Q 035593 153 ILVDLFSKGSLLSELEDPNTWEKLRQCLRKGGRIMV 188 (269)
Q Consensus 153 I~~d~~~~~~~~~~l~~~e~~~~~~~~L~pgG~l~~ 188 (269)
|++...+.. ...+.....+.+.|.-.+++
T Consensus 69 vi~~~~~~~-------~n~~~~~~~r~~~~~~~ii~ 97 (453)
T PRK09496 69 LIAVTDSDE-------TNMVACQIAKSLFGAPTTIA 97 (453)
T ss_pred EEEecCChH-------HHHHHHHHHHHhcCCCeEEE
Confidence 887543221 22334445555544443333
No 367
>PRK08507 prephenate dehydrogenase; Validated
Probab=90.36 E-value=0.97 Score=39.53 Aligned_cols=89 Identities=19% Similarity=0.250 Sum_probs=53.9
Q ss_pred cEEEEcCc--ccHHHHHHHHHCCCceEEEEECChHHHHHHHHhcCccccccCCCCcEEEEEccccccccCCCeeEEEEcC
Q 035593 80 PIGILGFG--AGSAARLILDLYPEAVIHGWELDPSVIKVAREFFALEKLEKSYPDRLFVYVGNALKASLKDGFSGILVDL 157 (269)
Q Consensus 80 ~VL~iG~G--~G~~~~~l~~~~p~~~v~~vEidp~~~~~a~~~~~~~~~~~~~~~rv~~~~~D~~~~~~~~~yD~I~~d~ 157 (269)
+|..||+| ++.++..+.+.....+|+++|.+++-.+.+++. +.. .. ..+..+. . ..|+||+..
T Consensus 2 ~I~iIG~G~mG~sla~~l~~~g~~~~v~~~d~~~~~~~~~~~~-g~~----------~~-~~~~~~~--~-~aD~Vilav 66 (275)
T PRK08507 2 KIGIIGLGLMGGSLGLALKEKGLISKVYGYDHNELHLKKALEL-GLV----------DE-IVSFEEL--K-KCDVIFLAI 66 (275)
T ss_pred EEEEEccCHHHHHHHHHHHhcCCCCEEEEEcCCHHHHHHHHHC-CCC----------cc-cCCHHHH--h-cCCEEEEeC
Confidence 58899988 366777776532235899999999887776542 211 00 0121111 2 389999865
Q ss_pred CCCCCCCCCCCcHHHHHHHHhhccCCcEEEEEecC
Q 035593 158 FSKGSLLSELEDPNTWEKLRQCLRKGGRIMVNVGG 192 (269)
Q Consensus 158 ~~~~~~~~~l~~~e~~~~~~~~L~pgG~l~~~~~~ 192 (269)
.... ..+.+..+.. ++++. +++.+.+
T Consensus 67 p~~~-------~~~~~~~l~~-l~~~~-iv~d~gs 92 (275)
T PRK08507 67 PVDA-------IIEILPKLLD-IKENT-TIIDLGS 92 (275)
T ss_pred cHHH-------HHHHHHHHhc-cCCCC-EEEECcc
Confidence 4321 4567777777 77765 4455543
No 368
>PF01555 N6_N4_Mtase: DNA methylase; InterPro: IPR002941 This domain is found in DNA methylases. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. This family contains both N-4 cytosine-specific DNA methylases and N-6 Adenine-specific DNA methylases. N-4 cytosine-specific DNA methylases (2.1.1.113 from EC) [] are enzymes that specifically methylate the amino group at the C-4 position of cytosines in DNA. Such enzymes are found as components of type II restriction-modification systems in prokaryotes. Such enzymes recognise a specific sequence in DNA and methylate a cytosine in that sequence. By this action they protect DNA from cleavage by type II restriction enzymes that recognise the same sequence. N-6 adenine-specific DNA methylases (2.1.1.72 from EC) (A-Mtase) are enzymes that specifically methylate the amino group at the C-6 position of adenines in DNA. Such enzymes are found in the three existing types of bacterial restriction-modification systems (in type I system the A-Mtase is the product of the hsdM gene, and in type III it is the product of the mod gene). All of these enzymes recognise a specific sequence in DNA and methylate an adenine in that sequence.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2ZIF_A 2ZIE_A 2ZIG_A 1NW6_A 1NW8_A 1NW7_A 1NW5_A 1EG2_A 1BOO_A 1G60_B ....
Probab=90.34 E-value=0.52 Score=39.27 Aligned_cols=41 Identities=20% Similarity=0.154 Sum_probs=34.5
Q ss_pred CCCcEEEEcCcccHHHHHHHHHCCCceEEEEECChHHHHHHHH
Q 035593 77 PPGPIGILGFGAGSAARLILDLYPEAVIHGWELDPSVIKVARE 119 (269)
Q Consensus 77 ~~~~VL~iG~G~G~~~~~l~~~~p~~~v~~vEidp~~~~~a~~ 119 (269)
+...|||-=+|+|+.+.++.+ -+-+..++|++++.+++|++
T Consensus 191 ~gdiVlDpF~GSGTT~~aa~~--l~R~~ig~E~~~~y~~~a~~ 231 (231)
T PF01555_consen 191 PGDIVLDPFAGSGTTAVAAEE--LGRRYIGIEIDEEYCEIAKK 231 (231)
T ss_dssp TT-EEEETT-TTTHHHHHHHH--TT-EEEEEESSHHHHHHHHH
T ss_pred cceeeehhhhccChHHHHHHH--cCCeEEEEeCCHHHHHHhcC
Confidence 578999999999999999887 47789999999999999975
No 369
>PRK07530 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=90.23 E-value=1.2 Score=39.32 Aligned_cols=105 Identities=9% Similarity=0.023 Sum_probs=62.0
Q ss_pred CCcEEEEcCcc--cHHHHHHHHHCCCceEEEEECChHHHHHHHHhcCcc-----ccccCC-------CCcEEEEEccccc
Q 035593 78 PGPIGILGFGA--GSAARLILDLYPEAVIHGWELDPSVIKVAREFFALE-----KLEKSY-------PDRLFVYVGNALK 143 (269)
Q Consensus 78 ~~~VL~iG~G~--G~~~~~l~~~~p~~~v~~vEidp~~~~~a~~~~~~~-----~~~~~~-------~~rv~~~~~D~~~ 143 (269)
-++|..||+|. ..++..+++ .+.+|+.+|.+++.++.+.+..... ..+... -.++++. .|.
T Consensus 4 ~~kI~vIGaG~mG~~iA~~la~--~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~-~~~-- 78 (292)
T PRK07530 4 IKKVGVIGAGQMGNGIAHVCAL--AGYDVLLNDVSADRLEAGLATINGNLARQVAKGKISEEARAAALARISTA-TDL-- 78 (292)
T ss_pred CCEEEEECCcHHHHHHHHHHHH--CCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEee-CCH--
Confidence 46799999983 344455544 4679999999999988765432100 000000 0123322 222
Q ss_pred cccCCCeeEEEEcCCCCCCCCCCCCcHHHHHHHHhhccCCcEEEEEecCC
Q 035593 144 ASLKDGFSGILVDLFSKGSLLSELEDPNTWEKLRQCLRKGGRIMVNVGGS 193 (269)
Q Consensus 144 ~~~~~~yD~I~~d~~~~~~~~~~l~~~e~~~~~~~~L~pgG~l~~~~~~~ 193 (269)
..-...|+|+...+... -....+|+.+...++++.+++.|..+.
T Consensus 79 -~~~~~aD~Vieavpe~~-----~~k~~~~~~l~~~~~~~~ii~s~ts~~ 122 (292)
T PRK07530 79 -EDLADCDLVIEAATEDE-----TVKRKIFAQLCPVLKPEAILATNTSSI 122 (292)
T ss_pred -HHhcCCCEEEEcCcCCH-----HHHHHHHHHHHhhCCCCcEEEEcCCCC
Confidence 12346799997554321 113578889999999988887666543
No 370
>TIGR00872 gnd_rel 6-phosphogluconate dehydrogenase (decarboxylating). This family resembles a larger family (gnd) of bacterial and eukaryotic 6-phosphogluconate dehydrogenases but differs from it by a deep split in a UPGMA similarity clustering tree and the lack of a central region of about 140 residues. Among complete genomes, it is found is found in Bacillus subtilis and Mycobacterium tuberculosis, both of which also contain gnd, and in Aquifex aeolicus. The protein from Methylobacillus flagellatus KT has been characterized as a decarboxylating 6-phosphogluconate dehydrogenase as part of an unusual formaldehyde oxidation cycle. In some sequenced organisms members of this family are the sole 6-phosphogluconate dehydrogenase present and are probably active in the pentose phosphate cycle.
Probab=90.22 E-value=2.9 Score=37.04 Aligned_cols=91 Identities=21% Similarity=0.264 Sum_probs=57.6
Q ss_pred cEEEEcCcc--cHHHHHHHHHCCCceEEEEECChHHHHHHHHhcCccccccCCCCcEEEEEcccccc-ccCCCeeEEEEc
Q 035593 80 PIGILGFGA--GSAARLILDLYPEAVIHGWELDPSVIKVAREFFALEKLEKSYPDRLFVYVGNALKA-SLKDGFSGILVD 156 (269)
Q Consensus 80 ~VL~iG~G~--G~~~~~l~~~~p~~~v~~vEidp~~~~~a~~~~~~~~~~~~~~~rv~~~~~D~~~~-~~~~~yD~I~~d 156 (269)
+|..||+|. +.++..+++ .+.+|.+.+.+++.++.+++. +... ..+..+. ..-...|+|++.
T Consensus 2 ~Ig~IGlG~mG~~la~~L~~--~g~~V~~~dr~~~~~~~l~~~-g~~~------------~~s~~~~~~~~~~~dvIi~~ 66 (298)
T TIGR00872 2 QLGLIGLGRMGANIVRRLAK--RGHDCVGYDHDQDAVKAMKED-RTTG------------VANLRELSQRLSAPRVVWVM 66 (298)
T ss_pred EEEEEcchHHHHHHHHHHHH--CCCEEEEEECCHHHHHHHHHc-CCcc------------cCCHHHHHhhcCCCCEEEEE
Confidence 588899884 345555555 467899999999887776653 2110 0122222 222457999986
Q ss_pred CCCCCCCCCCCCcHHHHHHHHhhccCCcEEEEEecCC
Q 035593 157 LFSKGSLLSELEDPNTWEKLRQCLRKGGRIMVNVGGS 193 (269)
Q Consensus 157 ~~~~~~~~~~l~~~e~~~~~~~~L~pgG~l~~~~~~~ 193 (269)
..+. ...+.++.+...|++| .+++++.+.
T Consensus 67 vp~~-------~~~~v~~~l~~~l~~g-~ivid~st~ 95 (298)
T TIGR00872 67 VPHG-------IVDAVLEELAPTLEKG-DIVIDGGNS 95 (298)
T ss_pred cCch-------HHHHHHHHHHhhCCCC-CEEEECCCC
Confidence 5432 2567888888888875 566777554
No 371
>PF03446 NAD_binding_2: NAD binding domain of 6-phosphogluconate dehydrogenase; InterPro: IPR006115 6-Phosphogluconate dehydrogenase (1.1.1.44 from EC) (6PGD) is an oxidative carboxylase that catalyses the decarboxylating reduction of 6-phosphogluconate into ribulose 5-phosphate in the presence of NADP. This reaction is a component of the hexose mono-phosphate shunt and pentose phosphate pathways (PPP) [, ]. Prokaryotic and eukaryotic 6PGD are proteins of about 470 amino acids whose sequence are highly conserved []. The protein is a homodimer in which the monomers act independently []: each contains a large, mainly alpha-helical domain and a smaller beta-alpha-beta domain, containing a mixed parallel and anti-parallel 6-stranded beta sheet []. NADP is bound in a cleft in the small domain, the substrate binding in an adjacent pocket []. This family represents the NADP binding domain of 6-phosphogluconate dehydrogenase which adopts a Rossman fold. The C-terminal domain is described in IPR006114 from INTERPRO.; GO: 0004616 phosphogluconate dehydrogenase (decarboxylating) activity, 0006098 pentose-phosphate shunt, 0055114 oxidation-reduction process; PDB: 3AX6_D 3PDU_G 3Q3C_A 3OBB_A 4DLL_B 1PGP_A 1PGN_A 2PGD_A 1PGQ_A 1PGO_A ....
Probab=90.20 E-value=2.4 Score=33.93 Aligned_cols=91 Identities=15% Similarity=0.209 Sum_probs=50.5
Q ss_pred CcEEEEcCc--ccHHHHHHHHHCCCceEEEEECChHHHHHHHHhcCccccccCCCCcEEEEEccccccccCCCeeEEEEc
Q 035593 79 GPIGILGFG--AGSAARLILDLYPEAVIHGWELDPSVIKVAREFFALEKLEKSYPDRLFVYVGNALKASLKDGFSGILVD 156 (269)
Q Consensus 79 ~~VL~iG~G--~G~~~~~l~~~~p~~~v~~vEidp~~~~~a~~~~~~~~~~~~~~~rv~~~~~D~~~~~~~~~yD~I~~d 156 (269)
.+|-.||+| +..+++.|++ .+.+|++.|.+++..+...+. + ++.. .+..+. -+..|+|++.
T Consensus 2 ~~Ig~IGlG~mG~~~a~~L~~--~g~~v~~~d~~~~~~~~~~~~-g-----------~~~~-~s~~e~--~~~~dvvi~~ 64 (163)
T PF03446_consen 2 MKIGFIGLGNMGSAMARNLAK--AGYEVTVYDRSPEKAEALAEA-G-----------AEVA-DSPAEA--AEQADVVILC 64 (163)
T ss_dssp BEEEEE--SHHHHHHHHHHHH--TTTEEEEEESSHHHHHHHHHT-T-----------EEEE-SSHHHH--HHHBSEEEE-
T ss_pred CEEEEEchHHHHHHHHHHHHh--cCCeEEeeccchhhhhhhHHh-h-----------hhhh-hhhhhH--hhcccceEee
Confidence 368889987 3334444444 478999999999877765543 1 2222 233333 1234999987
Q ss_pred CCCCCCCCCCCCcHHHHHH--HHhhccCCcEEEEEecCC
Q 035593 157 LFSKGSLLSELEDPNTWEK--LRQCLRKGGRIMVNVGGS 193 (269)
Q Consensus 157 ~~~~~~~~~~l~~~e~~~~--~~~~L~pgG~l~~~~~~~ 193 (269)
+.+.. ..++.+.. +...|++ |.+++++...
T Consensus 65 v~~~~------~v~~v~~~~~i~~~l~~-g~iiid~sT~ 96 (163)
T PF03446_consen 65 VPDDD------AVEAVLFGENILAGLRP-GKIIIDMSTI 96 (163)
T ss_dssp SSSHH------HHHHHHHCTTHGGGS-T-TEEEEE-SS-
T ss_pred cccch------hhhhhhhhhHHhhcccc-ceEEEecCCc
Confidence 65432 13466666 7777766 5555676554
No 372
>PLN02712 arogenate dehydrogenase
Probab=90.19 E-value=3 Score=41.46 Aligned_cols=91 Identities=18% Similarity=0.169 Sum_probs=54.6
Q ss_pred CCcEEEEcCc--ccHHHHHHHHHCCCceEEEEECChHHHHHHHHhcCccccccCCCCcEEEEEccccccccCCCeeEEEE
Q 035593 78 PGPIGILGFG--AGSAARLILDLYPEAVIHGWELDPSVIKVAREFFALEKLEKSYPDRLFVYVGNALKASLKDGFSGILV 155 (269)
Q Consensus 78 ~~~VL~iG~G--~G~~~~~l~~~~p~~~v~~vEidp~~~~~a~~~~~~~~~~~~~~~rv~~~~~D~~~~~~~~~yD~I~~ 155 (269)
+.+|..||+| +|.++..+.+ .+.+|++++.+... +.|++ ++ +.. ..|..+. .....|+|++
T Consensus 52 ~~kIgIIG~G~mG~slA~~L~~--~G~~V~~~dr~~~~-~~A~~-~G-----------v~~-~~d~~e~-~~~~aDvViL 114 (667)
T PLN02712 52 QLKIAIIGFGNYGQFLAKTLIS--QGHTVLAHSRSDHS-LAARS-LG-----------VSF-FLDPHDL-CERHPDVILL 114 (667)
T ss_pred CCEEEEEccCHHHHHHHHHHHH--CCCEEEEEeCCHHH-HHHHH-cC-----------CEE-eCCHHHH-hhcCCCEEEE
Confidence 5789999998 4666777665 25789999998543 33333 22 221 2232222 1134799998
Q ss_pred cCCCCCCCCCCCCcHHHHHHHH-hhccCCcEEEEEecCC
Q 035593 156 DLFSKGSLLSELEDPNTWEKLR-QCLRKGGRIMVNVGGS 193 (269)
Q Consensus 156 d~~~~~~~~~~l~~~e~~~~~~-~~L~pgG~l~~~~~~~ 193 (269)
..... ...++++.+. ..+++ |.+++++.+.
T Consensus 115 avP~~-------~~~~vl~~l~~~~l~~-g~iVvDv~Sv 145 (667)
T PLN02712 115 CTSII-------STENVLKSLPLQRLKR-NTLFVDVLSV 145 (667)
T ss_pred cCCHH-------HHHHHHHhhhhhcCCC-CeEEEECCCC
Confidence 64321 2456777765 45666 4577888654
No 373
>PRK11524 putative methyltransferase; Provisional
Probab=90.13 E-value=0.59 Score=41.23 Aligned_cols=44 Identities=14% Similarity=0.053 Sum_probs=39.9
Q ss_pred CCCcEEEEcCcccHHHHHHHHHCCCceEEEEECChHHHHHHHHhcC
Q 035593 77 PPGPIGILGFGAGSAARLILDLYPEAVIHGWELDPSVIKVAREFFA 122 (269)
Q Consensus 77 ~~~~VL~iG~G~G~~~~~l~~~~p~~~v~~vEidp~~~~~a~~~~~ 122 (269)
+...|||-=+|+|+.+.++.+ -+-+..++|++++.+++|++++.
T Consensus 208 ~GD~VLDPF~GSGTT~~AA~~--lgR~~IG~Ei~~~Y~~~a~~Rl~ 251 (284)
T PRK11524 208 PGDIVLDPFAGSFTTGAVAKA--SGRKFIGIEINSEYIKMGLRRLD 251 (284)
T ss_pred CCCEEEECCCCCcHHHHHHHH--cCCCEEEEeCCHHHHHHHHHHHH
Confidence 578899999999999998887 47899999999999999999974
No 374
>cd08261 Zn_ADH7 Alcohol dehydrogenases of the MDR family. This group contains members identified as related to zinc-dependent alcohol dehydrogenase and other members of the MDR family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group includes various activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase,
Probab=90.00 E-value=2.4 Score=37.78 Aligned_cols=96 Identities=16% Similarity=0.230 Sum_probs=61.2
Q ss_pred CCCCCcEEEEcCcc-cHHHHHHHHHCCCceEEEEECChHHHHHHHHhcCccccccCCCCcEEEEEccccc----cccCCC
Q 035593 75 ILPPGPIGILGFGA-GSAARLILDLYPEAVIHGWELDPSVIKVAREFFALEKLEKSYPDRLFVYVGNALK----ASLKDG 149 (269)
Q Consensus 75 l~~~~~VL~iG~G~-G~~~~~l~~~~p~~~v~~vEidp~~~~~a~~~~~~~~~~~~~~~rv~~~~~D~~~----~~~~~~ 149 (269)
+.+..+||+.|+|. |..+..+++. .+.+|+++..+++..+.++++ +... -+.....+..+ ....+.
T Consensus 157 l~~g~~vLI~g~g~vG~~a~~lA~~-~g~~v~~~~~s~~~~~~~~~~-g~~~-------v~~~~~~~~~~~l~~~~~~~~ 227 (337)
T cd08261 157 VTAGDTVLVVGAGPIGLGVIQVAKA-RGARVIVVDIDDERLEFAREL-GADD-------TINVGDEDVAARLRELTDGEG 227 (337)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHH-cCCeEEEECCCHHHHHHHHHh-CCCE-------EecCcccCHHHHHHHHhCCCC
Confidence 45678999998763 5666667765 478999999999988887553 3211 11111112111 123456
Q ss_pred eeEEEEcCCCCCCCCCCCCcHHHHHHHHhhccCCcEEEEE
Q 035593 150 FSGILVDLFSKGSLLSELEDPNTWEKLRQCLRKGGRIMVN 189 (269)
Q Consensus 150 yD~I~~d~~~~~~~~~~l~~~e~~~~~~~~L~pgG~l~~~ 189 (269)
+|+|+.... ..+.+..+.+.|+++|.++..
T Consensus 228 vd~vld~~g----------~~~~~~~~~~~l~~~G~~i~~ 257 (337)
T cd08261 228 ADVVIDATG----------NPASMEEAVELVAHGGRVVLV 257 (337)
T ss_pred CCEEEECCC----------CHHHHHHHHHHHhcCCEEEEE
Confidence 999984321 245778889999999998754
No 375
>PRK12491 pyrroline-5-carboxylate reductase; Reviewed
Probab=89.79 E-value=4.7 Score=35.32 Aligned_cols=91 Identities=13% Similarity=0.217 Sum_probs=56.0
Q ss_pred CcEEEEcCc--ccHHHHHHHHHC--CCceEEEEECChHHHHHHHHhcCccccccCCCCcEEEEEccccccccCCCeeEEE
Q 035593 79 GPIGILGFG--AGSAARLILDLY--PEAVIHGWELDPSVIKVAREFFALEKLEKSYPDRLFVYVGNALKASLKDGFSGIL 154 (269)
Q Consensus 79 ~~VL~iG~G--~G~~~~~l~~~~--p~~~v~~vEidp~~~~~a~~~~~~~~~~~~~~~rv~~~~~D~~~~~~~~~yD~I~ 154 (269)
.+|..|||| ++.++..|.+.. +..+|++.+.+++-++.+.+.++ ++. ..|..+. -...|+||
T Consensus 3 ~~IgfIG~G~MG~aia~~L~~~g~~~~~~I~v~~r~~~~~~~l~~~~g-----------~~~-~~~~~e~--~~~aDiIi 68 (272)
T PRK12491 3 KQIGFIGCGNMGIAMIGGMINKNIVSPDQIICSDLNVSNLKNASDKYG-----------ITI-TTNNNEV--ANSADILI 68 (272)
T ss_pred CeEEEECccHHHHHHHHHHHHCCCCCCceEEEECCCHHHHHHHHHhcC-----------cEE-eCCcHHH--HhhCCEEE
Confidence 369999998 556666666532 23479999999987776555333 221 1232222 23569999
Q ss_pred EcCCCCCCCCCCCCcHHHHHHHHhhccCCcEEEEEec
Q 035593 155 VDLFSKGSLLSELEDPNTWEKLRQCLRKGGRIMVNVG 191 (269)
Q Consensus 155 ~d~~~~~~~~~~l~~~e~~~~~~~~L~pgG~l~~~~~ 191 (269)
+...+. ...+.++.+...++++ .+++.+.
T Consensus 69 LavkP~-------~~~~vl~~l~~~~~~~-~lvISi~ 97 (272)
T PRK12491 69 LSIKPD-------LYSSVINQIKDQIKND-VIVVTIA 97 (272)
T ss_pred EEeChH-------HHHHHHHHHHHhhcCC-cEEEEeC
Confidence 865422 1457778888777664 5556654
No 376
>PF03141 Methyltransf_29: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR004159 Members of this family of hypothetical plant proteins are putative methyltransferases. ; GO: 0008168 methyltransferase activity
Probab=89.76 E-value=2.7 Score=39.83 Aligned_cols=95 Identities=19% Similarity=0.231 Sum_probs=57.4
Q ss_pred CCcEEEEcCcccHHHHHHHHHCCCceEEEEECCh----HHHHHHHHhcCccccccCCCCcEEEEEccc-ccc-ccCCCee
Q 035593 78 PGPIGILGFGAGSAARLILDLYPEAVIHGWELDP----SVIKVAREFFALEKLEKSYPDRLFVYVGNA-LKA-SLKDGFS 151 (269)
Q Consensus 78 ~~~VL~iG~G~G~~~~~l~~~~p~~~v~~vEidp----~~~~~a~~~~~~~~~~~~~~~rv~~~~~D~-~~~-~~~~~yD 151 (269)
-.+|+|..+|.|+++.+|.+ .| |.+.-.-| ..+.+.-.+ |+ +-++ -|- ..| +-+.+||
T Consensus 366 iRNVMDMnAg~GGFAAAL~~-~~---VWVMNVVP~~~~ntL~vIydR-GL----------IG~y-hDWCE~fsTYPRTYD 429 (506)
T PF03141_consen 366 IRNVMDMNAGYGGFAAALID-DP---VWVMNVVPVSGPNTLPVIYDR-GL----------IGVY-HDWCEAFSTYPRTYD 429 (506)
T ss_pred eeeeeeecccccHHHHHhcc-CC---ceEEEecccCCCCcchhhhhc-cc----------chhc-cchhhccCCCCcchh
Confidence 57899999999999999976 34 33333222 222221111 00 1111 122 223 4578999
Q ss_pred EEEEcC-CCCCCCCCCCCcHHHHHHHHhhccCCcEEEEEe
Q 035593 152 GILVDL-FSKGSLLSELEDPNTWEKLRQCLRKGGRIMVNV 190 (269)
Q Consensus 152 ~I~~d~-~~~~~~~~~l~~~e~~~~~~~~L~pgG~l~~~~ 190 (269)
+|-.+. |+. ..........+-++-+.|+|+|.+++--
T Consensus 430 LlHA~~lfs~--~~~rC~~~~illEmDRILRP~G~~iiRD 467 (506)
T PF03141_consen 430 LLHADGLFSL--YKDRCEMEDILLEMDRILRPGGWVIIRD 467 (506)
T ss_pred heehhhhhhh--hcccccHHHHHHHhHhhcCCCceEEEec
Confidence 997653 322 2233445789999999999999998844
No 377
>PF03721 UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain; InterPro: IPR001732 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ]. The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents the N-terminal NAD(+)-binding domain. Structural studies indicate that this domain forms an alpha-beta structure containing the six-stranded parallel beta sheet characteristic of the dinucleotide binding Rossman fold [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 3OJO_A 3OJL_A 1MV8_B 1MUU_A 1MFZ_C 3GG2_D 1DLJ_A 1DLI_A 3G79_B 2Y0E_D ....
Probab=89.75 E-value=0.54 Score=38.79 Aligned_cols=108 Identities=12% Similarity=0.125 Sum_probs=54.0
Q ss_pred cEEEEcCccc--HHHHHHHHHCCCceEEEEECChHHHHHHHHhc-Cccc--cc-----cCCCCcEEEEEccccccccCCC
Q 035593 80 PIGILGFGAG--SAARLILDLYPEAVIHGWELDPSVIKVAREFF-ALEK--LE-----KSYPDRLFVYVGNALKASLKDG 149 (269)
Q Consensus 80 ~VL~iG~G~G--~~~~~l~~~~p~~~v~~vEidp~~~~~a~~~~-~~~~--~~-----~~~~~rv~~~~~D~~~~~~~~~ 149 (269)
+|-++|+|-= .++..+++ .+.+|+++|+|++.++..++-. .+.+ +. .....|+++. .|.. ..-..
T Consensus 2 ~I~ViGlGyvGl~~A~~lA~--~G~~V~g~D~~~~~v~~l~~g~~p~~E~~l~~ll~~~~~~~~l~~t-~~~~--~ai~~ 76 (185)
T PF03721_consen 2 KIAVIGLGYVGLPLAAALAE--KGHQVIGVDIDEEKVEALNNGELPIYEPGLDELLKENVSAGRLRAT-TDIE--EAIKD 76 (185)
T ss_dssp EEEEE--STTHHHHHHHHHH--TTSEEEEE-S-HHHHHHHHTTSSSS-CTTHHHHHHHHHHTTSEEEE-SEHH--HHHHH
T ss_pred EEEEECCCcchHHHHHHHHh--CCCEEEEEeCChHHHHHHhhccccccccchhhhhccccccccchhh-hhhh--hhhhc
Confidence 6889999943 33344444 5789999999999998876532 1111 00 0002233322 1111 11346
Q ss_pred eeEEEEcCCCCCC---CCCCCCcHHHHHHHHhhccCCcEEEEEecC
Q 035593 150 FSGILVDLFSKGS---LLSELEDPNTWEKLRQCLRKGGRIMVNVGG 192 (269)
Q Consensus 150 yD~I~~d~~~~~~---~~~~l~~~e~~~~~~~~L~pgG~l~~~~~~ 192 (269)
.|++|+....+.. .+..-+-.+..+.+.+.|+++-++++-..-
T Consensus 77 adv~~I~VpTP~~~~~~~Dls~v~~a~~~i~~~l~~~~lvV~~STv 122 (185)
T PF03721_consen 77 ADVVFICVPTPSDEDGSPDLSYVESAIESIAPVLRPGDLVVIESTV 122 (185)
T ss_dssp -SEEEE----EBETTTSBETHHHHHHHHHHHHHHCSCEEEEESSSS
T ss_pred cceEEEecCCCccccCCccHHHHHHHHHHHHHHHhhcceEEEccEE
Confidence 8899887643321 111222357888889999996666665443
No 378
>PRK07819 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=89.63 E-value=0.81 Score=40.46 Aligned_cols=104 Identities=12% Similarity=0.119 Sum_probs=63.0
Q ss_pred CcEEEEcCc--ccHHHHHHHHHCCCceEEEEECChHHHHHHHHhcCc--cccc---cC-------CCCcEEEEEcccccc
Q 035593 79 GPIGILGFG--AGSAARLILDLYPEAVIHGWELDPSVIKVAREFFAL--EKLE---KS-------YPDRLFVYVGNALKA 144 (269)
Q Consensus 79 ~~VL~iG~G--~G~~~~~l~~~~p~~~v~~vEidp~~~~~a~~~~~~--~~~~---~~-------~~~rv~~~~~D~~~~ 144 (269)
.+|-.||+| ++.++..++. .+.+|+.+|.+|+.++.++++... ..+. .. .-.++++ ..|.
T Consensus 6 ~~V~ViGaG~mG~~iA~~~a~--~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~l~~-~~~~--- 79 (286)
T PRK07819 6 QRVGVVGAGQMGAGIAEVCAR--AGVDVLVFETTEELATAGRNRIEKSLERAVSRGKLTERERDAALARLRF-TTDL--- 79 (286)
T ss_pred cEEEEEcccHHHHHHHHHHHh--CCCEEEEEECCHHHHHHHHHHHHHHHHHHHhcccCChhhHHHHHhCeEe-eCCH---
Confidence 589999998 5555555554 588999999999999887655321 0000 00 0012222 1222
Q ss_pred ccCCCeeEEEEcCCCCCCCCCCCCcHHHHHHHHhhc-cCCcEEEEEecCC
Q 035593 145 SLKDGFSGILVDLFSKGSLLSELEDPNTWEKLRQCL-RKGGRIMVNVGGS 193 (269)
Q Consensus 145 ~~~~~yD~I~~d~~~~~~~~~~l~~~e~~~~~~~~L-~pgG~l~~~~~~~ 193 (269)
..-...|+|+-..+... -...++|..+-+.+ +|+.+++.|..+.
T Consensus 80 ~~~~~~d~ViEav~E~~-----~~K~~l~~~l~~~~~~~~~il~snTS~~ 124 (286)
T PRK07819 80 GDFADRQLVIEAVVEDE-----AVKTEIFAELDKVVTDPDAVLASNTSSI 124 (286)
T ss_pred HHhCCCCEEEEecccCH-----HHHHHHHHHHHHhhCCCCcEEEECCCCC
Confidence 12256789886543321 11357888888888 7888888777553
No 379
>PRK08818 prephenate dehydrogenase; Provisional
Probab=89.54 E-value=0.8 Score=42.09 Aligned_cols=81 Identities=14% Similarity=0.112 Sum_probs=53.8
Q ss_pred CCcEEEEcC-c--ccHHHHHHHHHCCCceEEEEECChHHHHHHHHhcCccccccCCCCcEEEEEccccccccCCCeeEEE
Q 035593 78 PGPIGILGF-G--AGSAARLILDLYPEAVIHGWELDPSVIKVAREFFALEKLEKSYPDRLFVYVGNALKASLKDGFSGIL 154 (269)
Q Consensus 78 ~~~VL~iG~-G--~G~~~~~l~~~~p~~~v~~vEidp~~~~~a~~~~~~~~~~~~~~~rv~~~~~D~~~~~~~~~yD~I~ 154 (269)
..+|+.||+ | +|++++.+.+. .+.+|+++|.+.+ .. .+.. ..-...|+|+
T Consensus 4 ~~~I~IIGl~GliGgslA~alk~~-~~~~V~g~D~~d~-------~~-----------------~~~~--~~v~~aDlVi 56 (370)
T PRK08818 4 QPVVGIVGSAGAYGRWLARFLRTR-MQLEVIGHDPADP-------GS-----------------LDPA--TLLQRADVLI 56 (370)
T ss_pred CCEEEEECCCCHHHHHHHHHHHhc-CCCEEEEEcCCcc-------cc-----------------CCHH--HHhcCCCEEE
Confidence 568999999 8 78888888875 3779999997410 00 0111 1134689999
Q ss_pred EcCCCCCCCCCCCCcHHHHHHHHhh---ccCCcEEEEEecCC
Q 035593 155 VDLFSKGSLLSELEDPNTWEKLRQC---LRKGGRIMVNVGGS 193 (269)
Q Consensus 155 ~d~~~~~~~~~~l~~~e~~~~~~~~---L~pgG~l~~~~~~~ 193 (269)
+..+-. ...++++++... |+| |.+++.+.+.
T Consensus 57 lavPv~-------~~~~~l~~l~~~~~~l~~-~~iVtDVgSv 90 (370)
T PRK08818 57 FSAPIR-------HTAALIEEYVALAGGRAA-GQLWLDVTSI 90 (370)
T ss_pred EeCCHH-------HHHHHHHHHhhhhcCCCC-CeEEEECCCC
Confidence 865422 246788888775 566 7777888765
No 380
>COG4301 Uncharacterized conserved protein [Function unknown]
Probab=89.44 E-value=9.2 Score=33.23 Aligned_cols=136 Identities=21% Similarity=0.210 Sum_probs=82.6
Q ss_pred CCCcEEEEcCcccHHHHHHHHHCCC----ceEEEEECChHHHHHHHHhcC--ccccccCCCCcEEEEEcccccc--ccCC
Q 035593 77 PPGPIGILGFGAGSAARLILDLYPE----AVIHGWELDPSVIKVAREFFA--LEKLEKSYPDRLFVYVGNALKA--SLKD 148 (269)
Q Consensus 77 ~~~~VL~iG~G~G~~~~~l~~~~p~----~~v~~vEidp~~~~~a~~~~~--~~~~~~~~~~rv~~~~~D~~~~--~~~~ 148 (269)
-+...+++|.|+..=++.|+..+.. .+.+.+|++..+++...+-.. .+. -.+.-+.+|.... ..++
T Consensus 78 g~~~lveLGsGns~Ktr~Llda~~~~~~~~ryvpiDv~a~iL~~ta~ai~~~y~~------l~v~~l~~~~~~~La~~~~ 151 (321)
T COG4301 78 GACTLVELGSGNSTKTRILLDALAHRGSLLRYVPIDVSASILRATATAILREYPG------LEVNALCGDYELALAELPR 151 (321)
T ss_pred CcceEEEecCCccHHHHHHHHHhhhcCCcceeeeecccHHHHHHHHHHHHHhCCC------CeEeehhhhHHHHHhcccC
Confidence 3678999999999999888876643 699999999999875443321 111 1356666776543 2222
Q ss_pred CeeEEEEcCCCCCCCCCCC---CcHHHHHHHHhhccCCcEEEEEecCCCc------cccccccchhHHHHHHHHHHHHHh
Q 035593 149 GFSGILVDLFSKGSLLSEL---EDPNTWEKLRQCLRKGGRIMVNVGGSCV------EAEDSRRDGKVVMEATLKAMHKVF 219 (269)
Q Consensus 149 ~yD~I~~d~~~~~~~~~~l---~~~e~~~~~~~~L~pgG~l~~~~~~~~~------~~~~~~~~~~~~~~~~~~~l~~~F 219 (269)
.---+++-+-+ ....+ ....|+..++..|+||-.+.+-+--... .|.++.+-...+...+++.+.++|
T Consensus 152 ~~~Rl~~flGS---tlGN~tp~e~~~Fl~~l~~a~~pGd~~LlGvDl~k~Ae~Le~AYdDp~gVTa~FnlNvLa~lNr~f 228 (321)
T COG4301 152 GGRRLFVFLGS---TLGNLTPGECAVFLTQLRGALRPGDYFLLGVDLRKPAERLEAAYDDPQGVTAEFNLNVLAHLNRVF 228 (321)
T ss_pred CCeEEEEEecc---cccCCChHHHHHHHHHHHhcCCCcceEEEeccccCHHHHHHHhhcCccchHHHHHHHHHHHHHHHh
Confidence 11222221111 11112 1357999999999999988875532211 112333333456667888888888
Q ss_pred cC
Q 035593 220 GK 221 (269)
Q Consensus 220 ~~ 221 (269)
+.
T Consensus 229 ~~ 230 (321)
T COG4301 229 GG 230 (321)
T ss_pred cc
Confidence 64
No 381
>TIGR02818 adh_III_F_hyde S-(hydroxymethyl)glutathione dehydrogenase/class III alcohol dehydrogenase. The members of this protein family show dual function. First, they remove formaldehyde, a toxic metabolite, by acting as S-(hydroxymethyl)glutathione dehydrogenase (1.1.1.284). S-(hydroxymethyl)glutathione can form spontaneously from formaldehyde and glutathione, and so this enzyme previously was designated glutathione-dependent formaldehyde dehydrogenase. These same proteins are also designated alcohol dehydrogenase (EC 1.1.1.1) of class III, for activities that do not require glutathione; they tend to show poor activity for ethanol among their various substrate alcohols.
Probab=89.43 E-value=3.7 Score=37.37 Aligned_cols=97 Identities=13% Similarity=0.219 Sum_probs=59.1
Q ss_pred CCCCCcEEEEcCc-ccHHHHHHHHHCCCc-eEEEEECChHHHHHHHHhcCccccccCCCCcEEEEE--ccccc-c--ccC
Q 035593 75 ILPPGPIGILGFG-AGSAARLILDLYPEA-VIHGWELDPSVIKVAREFFALEKLEKSYPDRLFVYV--GNALK-A--SLK 147 (269)
Q Consensus 75 l~~~~~VL~iG~G-~G~~~~~l~~~~p~~-~v~~vEidp~~~~~a~~~~~~~~~~~~~~~rv~~~~--~D~~~-~--~~~ 147 (269)
+.+..+||+.|+| .|.++..+++.. ++ +|++++.+++-.+.+++ ++... -+.... .+..+ . ...
T Consensus 183 ~~~g~~VlV~G~G~iG~~a~q~Ak~~-G~~~Vi~~~~~~~~~~~a~~-~Ga~~-------~i~~~~~~~~~~~~v~~~~~ 253 (368)
T TIGR02818 183 VEEGDTVAVFGLGGIGLSVIQGARMA-KASRIIAIDINPAKFELAKK-LGATD-------CVNPNDYDKPIQEVIVEITD 253 (368)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHc-CCCeEEEEcCCHHHHHHHHH-hCCCe-------EEcccccchhHHHHHHHHhC
Confidence 4568899999875 345556666654 55 89999999999999866 34211 011110 11111 1 112
Q ss_pred CCeeEEEEcCCCCCCCCCCCCcHHHHHHHHhhccCC-cEEEEEe
Q 035593 148 DGFSGILVDLFSKGSLLSELEDPNTWEKLRQCLRKG-GRIMVNV 190 (269)
Q Consensus 148 ~~yD~I~~d~~~~~~~~~~l~~~e~~~~~~~~L~pg-G~l~~~~ 190 (269)
..+|+|+ |... ....+..+.+.|+++ |.+++-.
T Consensus 254 ~g~d~vi-d~~G---------~~~~~~~~~~~~~~~~G~~v~~g 287 (368)
T TIGR02818 254 GGVDYSF-ECIG---------NVNVMRAALECCHKGWGESIIIG 287 (368)
T ss_pred CCCCEEE-ECCC---------CHHHHHHHHHHhhcCCCeEEEEe
Confidence 3689887 4322 135677778889886 9887644
No 382
>COG4017 Uncharacterized protein conserved in archaea [Function unknown]
Probab=89.39 E-value=1.4 Score=36.63 Aligned_cols=64 Identities=17% Similarity=0.160 Sum_probs=41.1
Q ss_pred CCCcEEEEcCc-ccHHHHHHHHHCCCceEEEEECChHHHHHHHHhcCccccccCCCCcEEEEEccccccccCCCeeEEEE
Q 035593 77 PPGPIGILGFG-AGSAARLILDLYPEAVIHGWELDPSVIKVAREFFALEKLEKSYPDRLFVYVGNALKASLKDGFSGILV 155 (269)
Q Consensus 77 ~~~~VL~iG~G-~G~~~~~l~~~~p~~~v~~vEidp~~~~~a~~~~~~~~~~~~~~~rv~~~~~D~~~~~~~~~yD~I~~ 155 (269)
.+++||++|.= +|.....++. ...+|+++||+|.+-.. ++ +++++... +. ...+.||+|+
T Consensus 44 E~~~vli~G~YltG~~~a~~Ls--~~~~vtv~Di~p~~r~~------lp-------~~v~Fr~~--~~-~~~G~~Dliv- 104 (254)
T COG4017 44 EFKEVLIFGVYLTGNYTAQMLS--KADKVTVVDIHPFMRGF------LP-------NNVKFRNL--LK-FIRGEVDLIV- 104 (254)
T ss_pred CcceEEEEEeeehhHHHHHHhc--ccceEEEecCCHHHHhc------CC-------CCccHhhh--cC-CCCCceeEEE-
Confidence 58999999974 6666666665 37899999999976332 22 23433322 11 4566788886
Q ss_pred cCCC
Q 035593 156 DLFS 159 (269)
Q Consensus 156 d~~~ 159 (269)
|...
T Consensus 105 DlTG 108 (254)
T COG4017 105 DLTG 108 (254)
T ss_pred eccc
Confidence 5443
No 383
>PRK09422 ethanol-active dehydrogenase/acetaldehyde-active reductase; Provisional
Probab=89.31 E-value=5 Score=35.57 Aligned_cols=97 Identities=18% Similarity=0.215 Sum_probs=59.5
Q ss_pred CCCCCcEEEEcCc-ccHHHHHHHHHCCCceEEEEECChHHHHHHHHhcCccccccCCCCcEEEEE-ccc-ccc-ccCCCe
Q 035593 75 ILPPGPIGILGFG-AGSAARLILDLYPEAVIHGWELDPSVIKVAREFFALEKLEKSYPDRLFVYV-GNA-LKA-SLKDGF 150 (269)
Q Consensus 75 l~~~~~VL~iG~G-~G~~~~~l~~~~p~~~v~~vEidp~~~~~a~~~~~~~~~~~~~~~rv~~~~-~D~-~~~-~~~~~y 150 (269)
+.+..+||+.|+| .|..+..+++...+.+|+++.-+++-.+.+++ ++... -+.... .+. ... ...+.+
T Consensus 160 ~~~g~~vlV~g~g~vG~~~~~la~~~~g~~v~~~~~~~~~~~~~~~-~g~~~-------v~~~~~~~~~~~~v~~~~~~~ 231 (338)
T PRK09422 160 IKPGQWIAIYGAGGLGNLALQYAKNVFNAKVIAVDINDDKLALAKE-VGADL-------TINSKRVEDVAKIIQEKTGGA 231 (338)
T ss_pred CCCCCEEEEECCcHHHHHHHHHHHHhCCCeEEEEeCChHHHHHHHH-cCCcE-------EecccccccHHHHHHHhcCCC
Confidence 4568899999954 34444555554347799999999999999855 44321 011000 111 111 122257
Q ss_pred eEEEEcCCCCCCCCCCCCcHHHHHHHHhhccCCcEEEEE
Q 035593 151 SGILVDLFSKGSLLSELEDPNTWEKLRQCLRKGGRIMVN 189 (269)
Q Consensus 151 D~I~~d~~~~~~~~~~l~~~e~~~~~~~~L~pgG~l~~~ 189 (269)
|.++.+.. ..+.++.+.++|+++|.++.-
T Consensus 232 d~vi~~~~----------~~~~~~~~~~~l~~~G~~v~~ 260 (338)
T PRK09422 232 HAAVVTAV----------AKAAFNQAVDAVRAGGRVVAV 260 (338)
T ss_pred cEEEEeCC----------CHHHHHHHHHhccCCCEEEEE
Confidence 86665532 246788899999999998763
No 384
>PRK08293 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=89.27 E-value=2.1 Score=37.70 Aligned_cols=104 Identities=12% Similarity=0.074 Sum_probs=60.2
Q ss_pred CcEEEEcCcc--cHHHHHHHHHCCCceEEEEECChHHHHHHHHhcCc------cccccC-C------CCcEEEEEccccc
Q 035593 79 GPIGILGFGA--GSAARLILDLYPEAVIHGWELDPSVIKVAREFFAL------EKLEKS-Y------PDRLFVYVGNALK 143 (269)
Q Consensus 79 ~~VL~iG~G~--G~~~~~l~~~~p~~~v~~vEidp~~~~~a~~~~~~------~~~~~~-~------~~rv~~~~~D~~~ 143 (269)
.+|.+||+|. ..++..+++ .+.+|+.+|++++.++.+++.... ...... . ..++++. .|..+
T Consensus 4 ~kIaViGaG~mG~~iA~~la~--~G~~V~l~d~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~-~d~~~ 80 (287)
T PRK08293 4 KNVTVAGAGVLGSQIAFQTAF--HGFDVTIYDISDEALEKAKERIAKLADRYVRDLEATKEAPAEAALNRITLT-TDLAE 80 (287)
T ss_pred cEEEEECCCHHHHHHHHHHHh--cCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhHHHHHcCeEEe-CCHHH
Confidence 5799999983 344444444 467999999999988887654210 000000 0 0233322 22221
Q ss_pred cccCCCeeEEEEcCCCCCCCCCCCCcHHHHHHHHhhccCCcEEEEEecC
Q 035593 144 ASLKDGFSGILVDLFSKGSLLSELEDPNTWEKLRQCLRKGGRIMVNVGG 192 (269)
Q Consensus 144 ~~~~~~yD~I~~d~~~~~~~~~~l~~~e~~~~~~~~L~pgG~l~~~~~~ 192 (269)
.-...|+|+...+... -...++++++...++++-+++.|..+
T Consensus 81 --a~~~aDlVieavpe~~-----~~k~~~~~~l~~~~~~~~ii~sntSt 122 (287)
T PRK08293 81 --AVKDADLVIEAVPEDP-----EIKGDFYEELAKVAPEKTIFATNSST 122 (287)
T ss_pred --HhcCCCEEEEeccCCH-----HHHHHHHHHHHhhCCCCCEEEECccc
Confidence 1346799987554321 01357888888888887777666543
No 385
>cd08300 alcohol_DH_class_III class III alcohol dehydrogenases. Members identified as glutathione-dependent formaldehyde dehydrogenase(FDH), a member of the zinc dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes or ketones. Like many zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these FDHs form dimers, with 4 zinc ions per dimer. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dim
Probab=89.25 E-value=4.2 Score=36.95 Aligned_cols=97 Identities=15% Similarity=0.226 Sum_probs=58.9
Q ss_pred CCCCCcEEEEcCc-ccHHHHHHHHHCCCc-eEEEEECChHHHHHHHHhcCccccccCCCCcEEEEEc--ccccc---ccC
Q 035593 75 ILPPGPIGILGFG-AGSAARLILDLYPEA-VIHGWELDPSVIKVAREFFALEKLEKSYPDRLFVYVG--NALKA---SLK 147 (269)
Q Consensus 75 l~~~~~VL~iG~G-~G~~~~~l~~~~p~~-~v~~vEidp~~~~~a~~~~~~~~~~~~~~~rv~~~~~--D~~~~---~~~ 147 (269)
+.+..+||++|+| .|.++..+++.. ++ +|++++.+++-.+.+++ ++... -+..... |..+. ...
T Consensus 184 ~~~g~~VlV~G~G~vG~~a~~~ak~~-G~~~vi~~~~~~~~~~~~~~-lGa~~-------~i~~~~~~~~~~~~v~~~~~ 254 (368)
T cd08300 184 VEPGSTVAVFGLGAVGLAVIQGAKAA-GASRIIGIDINPDKFELAKK-FGATD-------CVNPKDHDKPIQQVLVEMTD 254 (368)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHc-CCCeEEEEeCCHHHHHHHHH-cCCCE-------EEcccccchHHHHHHHHHhC
Confidence 4568899999864 344445566654 56 79999999999998865 44211 0111111 11111 122
Q ss_pred CCeeEEEEcCCCCCCCCCCCCcHHHHHHHHhhccCC-cEEEEEe
Q 035593 148 DGFSGILVDLFSKGSLLSELEDPNTWEKLRQCLRKG-GRIMVNV 190 (269)
Q Consensus 148 ~~yD~I~~d~~~~~~~~~~l~~~e~~~~~~~~L~pg-G~l~~~~ 190 (269)
..+|+|+ |... ....+..+.+.|+++ |.++.--
T Consensus 255 ~g~d~vi-d~~g---------~~~~~~~a~~~l~~~~G~~v~~g 288 (368)
T cd08300 255 GGVDYTF-ECIG---------NVKVMRAALEACHKGWGTSVIIG 288 (368)
T ss_pred CCCcEEE-ECCC---------ChHHHHHHHHhhccCCCeEEEEc
Confidence 3799987 4322 135778888899887 8887643
No 386
>cd08238 sorbose_phosphate_red L-sorbose-1-phosphate reductase. L-sorbose-1-phosphate reductase, a member of the MDR family, catalyzes the NADPH-dependent conversion of l-sorbose 1-phosphate to d-glucitol 6-phosphate in the metabolism of L-sorbose to (also converts d-fructose 1-phosphate to d-mannitol 6-phosphate). The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of an beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the found
Probab=89.21 E-value=3.8 Score=37.95 Aligned_cols=102 Identities=19% Similarity=0.140 Sum_probs=61.1
Q ss_pred CCCCcEEEEcC--cccHHHHHHHHHCC-C-ceEEEEECChHHHHHHHHhcCccccccCCCCcEEEEE----cccccc---
Q 035593 76 LPPGPIGILGF--GAGSAARLILDLYP-E-AVIHGWELDPSVIKVAREFFALEKLEKSYPDRLFVYV----GNALKA--- 144 (269)
Q Consensus 76 ~~~~~VL~iG~--G~G~~~~~l~~~~p-~-~~v~~vEidp~~~~~a~~~~~~~~~~~~~~~rv~~~~----~D~~~~--- 144 (269)
.+..+||++|+ +-|.++..+++... + .+|++++.+++-++.+++.++..... ......++. .|..+.
T Consensus 174 ~~g~~VlV~G~~G~vG~~aiq~ak~~G~g~~~Vi~~~~~~~r~~~a~~~~~~~~~~--~Ga~~~~i~~~~~~~~~~~v~~ 251 (410)
T cd08238 174 KPGGNTAILGGAGPMGLMAIDYAIHGPIGPSLLVVTDVNDERLARAQRLFPPEAAS--RGIELLYVNPATIDDLHATLME 251 (410)
T ss_pred CCCCEEEEEeCCCHHHHHHHHHHHhcccCCceEEEEcCCHHHHHHHHHhccccccc--cCceEEEECCCccccHHHHHHH
Confidence 45678999973 36667777777542 2 37999999999999998864311000 000112221 111111
Q ss_pred -ccCCCeeEEEEcCCCCCCCCCCCCcHHHHHHHHhhccCCcEEEEE
Q 035593 145 -SLKDGFSGILVDLFSKGSLLSELEDPNTWEKLRQCLRKGGRIMVN 189 (269)
Q Consensus 145 -~~~~~yD~I~~d~~~~~~~~~~l~~~e~~~~~~~~L~pgG~l~~~ 189 (269)
.....+|+|+.... ....+..+.+.|+++|.+++.
T Consensus 252 ~t~g~g~D~vid~~g----------~~~~~~~a~~~l~~~G~~v~~ 287 (410)
T cd08238 252 LTGGQGFDDVFVFVP----------VPELVEEADTLLAPDGCLNFF 287 (410)
T ss_pred HhCCCCCCEEEEcCC----------CHHHHHHHHHHhccCCeEEEE
Confidence 23346998885321 135778888899988866553
No 387
>PF12692 Methyltransf_17: S-adenosyl-L-methionine methyltransferase; PDB: 3IHT_B.
Probab=89.07 E-value=0.64 Score=36.84 Aligned_cols=98 Identities=17% Similarity=0.271 Sum_probs=51.1
Q ss_pred CCcEEEEcCcccHHHHHHHHHCCCceEEEEECChHHHHHHHHhcCccccccCCCCcEEEEEcccccc-----ccCCCeeE
Q 035593 78 PGPIGILGFGAGSAARLILDLYPEAVIHGWELDPSVIKVAREFFALEKLEKSYPDRLFVYVGNALKA-----SLKDGFSG 152 (269)
Q Consensus 78 ~~~VL~iG~G~G~~~~~l~~~~p~~~v~~vEidp~~~~~a~~~~~~~~~~~~~~~rv~~~~~D~~~~-----~~~~~yD~ 152 (269)
+.-||++|.|.|..=-+|.+.+|+.+|.++|---.. + +. ...+.-.++.||+++. ....+.-+
T Consensus 29 ~G~VlElGLGNGRTydHLRe~~p~R~I~vfDR~l~~------h---p~---~~P~~~~~ilGdi~~tl~~~~~~g~~a~l 96 (160)
T PF12692_consen 29 PGPVLELGLGNGRTYDHLREIFPDRRIYVFDRALAC------H---PS---STPPEEDLILGDIRETLPALARFGAGAAL 96 (160)
T ss_dssp -S-EEEE--TTSHHHHHHHHH--SS-EEEEESS--S----------GG---G---GGGEEES-HHHHHHHHHHH-S-EEE
T ss_pred CCceEEeccCCCccHHHHHHhCCCCeEEEEeeeccc------C---CC---CCCchHheeeccHHHHhHHHHhcCCceEE
Confidence 678999999999999999999999999999973211 1 10 0123457888999875 23445555
Q ss_pred EEEcCCCCCCCCCCCCcHHHH-HHHHhhccCCcEEEE
Q 035593 153 ILVDLFSKGSLLSELEDPNTW-EKLRQCLRKGGRIMV 188 (269)
Q Consensus 153 I~~d~~~~~~~~~~l~~~e~~-~~~~~~L~pgG~l~~ 188 (269)
+-.|.-.+.. .....+..++ ..+...|.|||+++-
T Consensus 97 aHaD~G~g~~-~~d~a~a~~lspli~~~la~gGi~vS 132 (160)
T PF12692_consen 97 AHADIGTGDK-EKDDATAAWLSPLIAPVLAPGGIMVS 132 (160)
T ss_dssp EEE----S-H-HHHHHHHHHHHHHHGGGEEEEEEEEE
T ss_pred EEeecCCCCc-chhHHHHHhhhHHHHHHhcCCcEEEe
Confidence 6566543310 0011111222 245678999998875
No 388
>KOG4058 consensus Uncharacterized conserved protein [Function unknown]
Probab=89.07 E-value=1.4 Score=35.00 Aligned_cols=63 Identities=19% Similarity=0.102 Sum_probs=45.8
Q ss_pred CCCcEEEEcCcccHHHHHHHHHCCCceEEEEECChHHHHHHHHhcCccccccCCCCcEEEEEcccccc
Q 035593 77 PPGPIGILGFGAGSAARLILDLYPEAVIHGWELDPSVIKVAREFFALEKLEKSYPDRLFVYVGNALKA 144 (269)
Q Consensus 77 ~~~~VL~iG~G~G~~~~~l~~~~p~~~v~~vEidp~~~~~a~~~~~~~~~~~~~~~rv~~~~~D~~~~ 144 (269)
+..+.+|||.|.|.+..+.+++. -..-++||+||=.+..+|-+.=-.. ...+.++..-|...+
T Consensus 72 ~~GklvDlGSGDGRiVlaaar~g-~~~a~GvELNpwLVaysrl~a~R~g----~~k~trf~RkdlwK~ 134 (199)
T KOG4058|consen 72 PKGKLVDLGSGDGRIVLAAARCG-LRPAVGVELNPWLVAYSRLHAWRAG----CAKSTRFRRKDLWKV 134 (199)
T ss_pred CCCcEEeccCCCceeehhhhhhC-CCcCCceeccHHHHHHHHHHHHHHh----cccchhhhhhhhhhc
Confidence 46899999999999999988853 4578999999999998875531000 124566666666555
No 389
>cd05213 NAD_bind_Glutamyl_tRNA_reduct NADP-binding domain of glutamyl-tRNA reductase. Glutamyl-tRNA reductase catalyzes the conversion of glutamyl-tRNA to glutamate-1-semialdehyde, initiating the synthesis of tetrapyrrole. Whereas tRNAs are generally associated with peptide bond formation in protein translation, here the tRNA activates glutamate in the initiation of tetrapyrrole biosynthesis in archaea, plants and many bacteria. In the first step, activated glutamate is reduced to glutamate-1-semi-aldehyde via the NADPH dependent glutamyl-tRNA reductase. Glutamyl-tRNA reductase forms a V-shaped dimer. Each monomer has 3 domains: an N-terminal catalytic domain, a classic nucleotide binding domain, and a C-terminal dimerization domain. Although the representative structure 1GPJ lacks a bound NADPH, a theoretical binding pocket has been described. (PMID 11172694). Amino acid dehydrogenase (DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate,
Probab=89.05 E-value=4.4 Score=36.23 Aligned_cols=96 Identities=15% Similarity=0.035 Sum_probs=53.0
Q ss_pred CCCcEEEEcCc-ccHHHHHHHHHCCCceEEEEECChHHH-HHHHHhcCccccccCCCCcEEEEE-ccccccccCCCeeEE
Q 035593 77 PPGPIGILGFG-AGSAARLILDLYPEAVIHGWELDPSVI-KVAREFFALEKLEKSYPDRLFVYV-GNALKASLKDGFSGI 153 (269)
Q Consensus 77 ~~~~VL~iG~G-~G~~~~~l~~~~p~~~v~~vEidp~~~-~~a~~~~~~~~~~~~~~~rv~~~~-~D~~~~~~~~~yD~I 153 (269)
+..+|+.+|+| .|......+......+|++++.+++-. ++|++ ++. .++. .|.. ..-..+|+|
T Consensus 177 ~~~~V~ViGaG~iG~~~a~~L~~~g~~~V~v~~r~~~ra~~la~~-~g~-----------~~~~~~~~~--~~l~~aDvV 242 (311)
T cd05213 177 KGKKVLVIGAGEMGELAAKHLAAKGVAEITIANRTYERAEELAKE-LGG-----------NAVPLDELL--ELLNEADVV 242 (311)
T ss_pred cCCEEEEECcHHHHHHHHHHHHHcCCCEEEEEeCCHHHHHHHHHH-cCC-----------eEEeHHHHH--HHHhcCCEE
Confidence 47899999986 233222222222346899999998754 55554 331 1111 1211 222458999
Q ss_pred EEcCCCCCCCCCCCCcHHHHHHHHhhccCCcEEEEEecCC
Q 035593 154 LVDLFSKGSLLSELEDPNTWEKLRQCLRKGGRIMVNVGGS 193 (269)
Q Consensus 154 ~~d~~~~~~~~~~l~~~e~~~~~~~~L~pgG~l~~~~~~~ 193 (269)
|.....+. ..+.+..+.+....+|.+++++..|
T Consensus 243 i~at~~~~-------~~~~~~~~~~~~~~~~~~viDlavP 275 (311)
T cd05213 243 ISATGAPH-------YAKIVERAMKKRSGKPRLIVDLAVP 275 (311)
T ss_pred EECCCCCc-------hHHHHHHHHhhCCCCCeEEEEeCCC
Confidence 97543321 1344555444444468899988754
No 390
>cd08255 2-desacetyl-2-hydroxyethyl_bacteriochlorophyllide_like 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide and other MDR family members. This subgroup of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family has members identified as 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase and alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MD
Probab=88.91 E-value=4.8 Score=34.60 Aligned_cols=94 Identities=17% Similarity=0.191 Sum_probs=58.7
Q ss_pred CCCCCCcEEEEcCcc-cHHHHHHHHHCCCce-EEEEECChHHHHHHHHhcCccccccCCCCcEEEEEccccccccCCCee
Q 035593 74 PILPPGPIGILGFGA-GSAARLILDLYPEAV-IHGWELDPSVIKVAREFFALEKLEKSYPDRLFVYVGNALKASLKDGFS 151 (269)
Q Consensus 74 ~l~~~~~VL~iG~G~-G~~~~~l~~~~p~~~-v~~vEidp~~~~~a~~~~~~~~~~~~~~~rv~~~~~D~~~~~~~~~yD 151 (269)
.+.+..+||+.|+|. |..+..+++.. +.+ |++++.+++..+.+++. +.. ..+ .... ........+|
T Consensus 94 ~~~~g~~vlI~g~g~vg~~~i~~a~~~-g~~~vi~~~~~~~~~~~~~~~-g~~-------~~~--~~~~-~~~~~~~~~d 161 (277)
T cd08255 94 EPRLGERVAVVGLGLVGLLAAQLAKAA-GAREVVGVDPDAARRELAEAL-GPA-------DPV--AADT-ADEIGGRGAD 161 (277)
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHc-CCCcEEEECCCHHHHHHHHHc-CCC-------ccc--cccc-hhhhcCCCCC
Confidence 345678999998764 55555566654 566 99999999988887764 310 001 0000 0112344689
Q ss_pred EEEEcCCCCCCCCCCCCcHHHHHHHHhhccCCcEEEEE
Q 035593 152 GILVDLFSKGSLLSELEDPNTWEKLRQCLRKGGRIMVN 189 (269)
Q Consensus 152 ~I~~d~~~~~~~~~~l~~~e~~~~~~~~L~pgG~l~~~ 189 (269)
+|+.... .........+.|+++|.++.-
T Consensus 162 ~vl~~~~----------~~~~~~~~~~~l~~~g~~~~~ 189 (277)
T cd08255 162 VVIEASG----------SPSALETALRLLRDRGRVVLV 189 (277)
T ss_pred EEEEccC----------ChHHHHHHHHHhcCCcEEEEE
Confidence 8874222 135678888899999998754
No 391
>PRK05562 precorrin-2 dehydrogenase; Provisional
Probab=88.85 E-value=2.8 Score=35.72 Aligned_cols=103 Identities=14% Similarity=0.106 Sum_probs=60.9
Q ss_pred hHHHHHhcCCCCC--CCCcEEEEcCcccHHHH--HHHHHCCCceEEEE--ECChHHHHHHHHhcCccccccCCCCcEEEE
Q 035593 64 TYFDAFATLPPIL--PPGPIGILGFGAGSAAR--LILDLYPEAVIHGW--ELDPSVIKVAREFFALEKLEKSYPDRLFVY 137 (269)
Q Consensus 64 ~y~~~~~~~~~l~--~~~~VL~iG~G~G~~~~--~l~~~~p~~~v~~v--Eidp~~~~~a~~~~~~~~~~~~~~~rv~~~ 137 (269)
.|.+.+-.+|... ..++||+||+|.=..-+ .|++ -+++|++| |+++++.++++ ..+++++
T Consensus 9 ~~~~~~~~~pi~l~~~~~~VLVVGGG~VA~RK~~~Ll~--~gA~VtVVap~i~~el~~l~~------------~~~i~~~ 74 (223)
T PRK05562 9 IYNEENKYMFISLLSNKIKVLIIGGGKAAFIKGKTFLK--KGCYVYILSKKFSKEFLDLKK------------YGNLKLI 74 (223)
T ss_pred HhhccCCEeeeEEECCCCEEEEECCCHHHHHHHHHHHh--CCCEEEEEcCCCCHHHHHHHh------------CCCEEEE
Confidence 3444444444433 47799999988766543 2333 25556655 88888877643 2357777
Q ss_pred EccccccccCCCeeEEEEcCCCCCCCCCCCCcHHHHHHHHhhccCCcEEEEEec
Q 035593 138 VGNALKASLKDGFSGILVDLFSKGSLLSELEDPNTWEKLRQCLRKGGRIMVNVG 191 (269)
Q Consensus 138 ~~D~~~~~~~~~yD~I~~d~~~~~~~~~~l~~~e~~~~~~~~L~pgG~l~~~~~ 191 (269)
..+...- .-..+++|+.... .++.=+.+++..+..|+++.++.
T Consensus 75 ~r~~~~~-dl~g~~LViaATd----------D~~vN~~I~~~a~~~~~lvn~vd 117 (223)
T PRK05562 75 KGNYDKE-FIKDKHLIVIATD----------DEKLNNKIRKHCDRLYKLYIDCS 117 (223)
T ss_pred eCCCChH-HhCCCcEEEECCC----------CHHHHHHHHHHHHHcCCeEEEcC
Confidence 6543321 2245788876432 24566666666666677766553
No 392
>cd08286 FDH_like_ADH2 formaldehyde dehydrogenase (FDH)-like. This group is related to formaldehyde dehydrogenase (FDH), which is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. This family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Another member is identified as a dihydroxyacetone reductase. Like the zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), tetrameric FDHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains and a structural zinc in a lobe of the catalytic domain. Unlike ADH, where NAD(P)(H) acts as a cofactor, NADH in FDH is a tightly bound redox cofactor (similar to nicotinamide proteins). The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (
Probab=88.79 E-value=6 Score=35.29 Aligned_cols=97 Identities=25% Similarity=0.379 Sum_probs=57.7
Q ss_pred CCCCCcEEEEcCc-ccHHHHHHHHHCCCceEEEEECChHHHHHHHHhcCccccccCCCCcEEEEEcccc----ccccCCC
Q 035593 75 ILPPGPIGILGFG-AGSAARLILDLYPEAVIHGWELDPSVIKVAREFFALEKLEKSYPDRLFVYVGNAL----KASLKDG 149 (269)
Q Consensus 75 l~~~~~VL~iG~G-~G~~~~~l~~~~p~~~v~~vEidp~~~~~a~~~~~~~~~~~~~~~rv~~~~~D~~----~~~~~~~ 149 (269)
+.+..+||..|+| .|..+..+++.....+|++++.++.-.+.+++. +... -+.....+.. .......
T Consensus 164 ~~~g~~vlI~g~g~~g~~~~~~a~~~G~~~v~~~~~~~~~~~~~~~~-g~~~-------~v~~~~~~~~~~i~~~~~~~~ 235 (345)
T cd08286 164 VKPGDTVAIVGAGPVGLAALLTAQLYSPSKIIMVDLDDNRLEVAKKL-GATH-------TVNSAKGDAIEQVLELTDGRG 235 (345)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHHh-CCCc-------eeccccccHHHHHHHHhCCCC
Confidence 4567889997654 233334455544337899999999888877753 3211 1111112211 1123456
Q ss_pred eeEEEEcCCCCCCCCCCCCcHHHHHHHHhhccCCcEEEEE
Q 035593 150 FSGILVDLFSKGSLLSELEDPNTWEKLRQCLRKGGRIMVN 189 (269)
Q Consensus 150 yD~I~~d~~~~~~~~~~l~~~e~~~~~~~~L~pgG~l~~~ 189 (269)
+|+|+ |... ....++.+.+.|+++|.++..
T Consensus 236 ~d~vl-d~~g---------~~~~~~~~~~~l~~~g~~v~~ 265 (345)
T cd08286 236 VDVVI-EAVG---------IPATFELCQELVAPGGHIANV 265 (345)
T ss_pred CCEEE-ECCC---------CHHHHHHHHHhccCCcEEEEe
Confidence 99987 3321 235678888999999998753
No 393
>cd08265 Zn_ADH3 Alcohol dehydrogenases of the MDR family. This group resembles the zinc-dependent alcohol dehydrogenase and has the catalytic and structural zinc-binding sites characteristic of this group. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanedi
Probab=88.75 E-value=2.6 Score=38.54 Aligned_cols=98 Identities=15% Similarity=0.156 Sum_probs=57.8
Q ss_pred CCCCCCcEEEEcCc-ccHHHHHHHHHCCCc-eEEEEECChHHHHHHHHhcCccccccCCCCcEEEEEc---cc----ccc
Q 035593 74 PILPPGPIGILGFG-AGSAARLILDLYPEA-VIHGWELDPSVIKVAREFFALEKLEKSYPDRLFVYVG---NA----LKA 144 (269)
Q Consensus 74 ~l~~~~~VL~iG~G-~G~~~~~l~~~~p~~-~v~~vEidp~~~~~a~~~~~~~~~~~~~~~rv~~~~~---D~----~~~ 144 (269)
.+.+..+||+.|+| .|..+..+++.. +. +|++++.+++-.+++++ ++... -+..... +. .+.
T Consensus 200 ~~~~g~~VlV~g~g~vG~~ai~lA~~~-G~~~vi~~~~~~~~~~~~~~-~g~~~-------~v~~~~~~~~~~~~~v~~~ 270 (384)
T cd08265 200 GFRPGAYVVVYGAGPIGLAAIALAKAA-GASKVIAFEISEERRNLAKE-MGADY-------VFNPTKMRDCLSGEKVMEV 270 (384)
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHc-CCCEEEEEcCCHHHHHHHHH-cCCCE-------EEcccccccccHHHHHHHh
Confidence 34567889998764 223334455543 55 79999999987777776 34311 0111100 11 112
Q ss_pred ccCCCeeEEEEcCCCCCCCCCCCCcHHHHHHHHhhccCCcEEEEE
Q 035593 145 SLKDGFSGILVDLFSKGSLLSELEDPNTWEKLRQCLRKGGRIMVN 189 (269)
Q Consensus 145 ~~~~~yD~I~~d~~~~~~~~~~l~~~e~~~~~~~~L~pgG~l~~~ 189 (269)
...+.+|+|+ |.... ....+..+.+.|+++|.++.-
T Consensus 271 ~~g~gvDvvl-d~~g~--------~~~~~~~~~~~l~~~G~~v~~ 306 (384)
T cd08265 271 TKGWGADIQV-EAAGA--------PPATIPQMEKSIAINGKIVYI 306 (384)
T ss_pred cCCCCCCEEE-ECCCC--------cHHHHHHHHHHHHcCCEEEEE
Confidence 3345699887 44321 235678888899999998764
No 394
>PF01210 NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus; InterPro: IPR011128 NAD-dependent glycerol-3-phosphate dehydrogenase (GPDH) catalyses the interconversion of dihydroxyacetone phosphate and L-glycerol-3-phosphate. This family represents the N-terminal NAD-binding domain [].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0046168 glycerol-3-phosphate catabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 1YJ8_B 2PLA_A 1WPQ_B 1X0V_A 1X0X_A 1BG6_A 1TXG_B 1N1G_A 1M67_A 1JDJ_A ....
Probab=88.72 E-value=1.5 Score=35.00 Aligned_cols=102 Identities=21% Similarity=0.238 Sum_probs=57.9
Q ss_pred cEEEEcCcccHHHHHHHHHCCCceEEEEECChHHHHHHHHhcCccc-cc-cCCCCcEEEEEccccccccCCCeeEEEEcC
Q 035593 80 PIGILGFGAGSAARLILDLYPEAVIHGWELDPSVIKVAREFFALEK-LE-KSYPDRLFVYVGNALKASLKDGFSGILVDL 157 (269)
Q Consensus 80 ~VL~iG~G~G~~~~~l~~~~p~~~v~~vEidp~~~~~a~~~~~~~~-~~-~~~~~rv~~~~~D~~~~~~~~~yD~I~~d~ 157 (269)
+|.+||+|.+..+....-...+.+|+....+++.++..++.-.... .. ..-.+++.+ ..|..+. -+..|+|++-.
T Consensus 1 KI~ViGaG~~G~AlA~~la~~g~~V~l~~~~~~~~~~i~~~~~n~~~~~~~~l~~~i~~-t~dl~~a--~~~ad~Iiiav 77 (157)
T PF01210_consen 1 KIAVIGAGNWGTALAALLADNGHEVTLWGRDEEQIEEINETRQNPKYLPGIKLPENIKA-TTDLEEA--LEDADIIIIAV 77 (157)
T ss_dssp EEEEESSSHHHHHHHHHHHHCTEEEEEETSCHHHHHHHHHHTSETTTSTTSBEETTEEE-ESSHHHH--HTT-SEEEE-S
T ss_pred CEEEECcCHHHHHHHHHHHHcCCEEEEEeccHHHHHHHHHhCCCCCCCCCcccCccccc-ccCHHHH--hCcccEEEecc
Confidence 5889999977766544332246799999999988877665432100 00 000123443 3444332 24568999854
Q ss_pred CCCCCCCCCCCcHHHHHHHHhhccCCcEEEEEecC
Q 035593 158 FSKGSLLSELEDPNTWEKLRQCLRKGGRIMVNVGG 192 (269)
Q Consensus 158 ~~~~~~~~~l~~~e~~~~~~~~L~pgG~l~~~~~~ 192 (269)
++. ..++++++++..|++ |..++++..
T Consensus 78 Ps~-------~~~~~~~~l~~~l~~-~~~ii~~~K 104 (157)
T PF01210_consen 78 PSQ-------AHREVLEQLAPYLKK-GQIIISATK 104 (157)
T ss_dssp -GG-------GHHHHHHHHTTTSHT-T-EEEETS-
T ss_pred cHH-------HHHHHHHHHhhccCC-CCEEEEecC
Confidence 432 247899999999966 445555543
No 395
>PF00145 DNA_methylase: C-5 cytosine-specific DNA methylase; InterPro: IPR001525 C-5 cytosine-specific DNA methylases (2.1.1.37 from EC) (C5 Mtase) are enzymes that specifically methylate the C-5 carbon of cytosines in DNA to produce C5-methylcytosine [, , ]. In mammalian cells, cytosine-specific methyltransferases methylate certain CpG sequences, which are believed to modulate gene expression and cell differentiation. In bacteria, these enzymes are a component of restriction-modification systems and serve as valuable tools for the manipulation of DNA [, ]. The structure of HhaI methyltransferase (M.HhaI) has been resolved to 2.5 A []: the molecule folds into 2 domains - a larger catalytic domain containing catalytic and cofactor binding sites, and a smaller DNA recognition domain.; GO: 0003677 DNA binding, 0006306 DNA methylation; PDB: 4DA4_A 3PT6_B 3AV6_A 3AV5_A 3AV4_A 3PT9_A 1DCT_A 3LX6_A 3ME5_A 2QRV_A ....
Probab=88.71 E-value=8.6 Score=33.88 Aligned_cols=118 Identities=15% Similarity=0.085 Sum_probs=71.9
Q ss_pred cEEEEcCcccHHHHHHHHHCCCceEEEEECChHHHHHHHHhcCccccccCCCCcEEEEEccccccc---cCCCeeEEEEc
Q 035593 80 PIGILGFGAGSAARLILDLYPEAVIHGWELDPSVIKVAREFFALEKLEKSYPDRLFVYVGNALKAS---LKDGFSGILVD 156 (269)
Q Consensus 80 ~VL~iG~G~G~~~~~l~~~~p~~~v~~vEidp~~~~~a~~~~~~~~~~~~~~~rv~~~~~D~~~~~---~~~~yD~I~~d 156 (269)
+++++=||.|.+..-+.+. .--.+.++|+|+...+.-+.+++ .++.+|..++. -++..|+|+..
T Consensus 2 ~~~dlFsG~Gg~~~g~~~a-g~~~~~a~e~~~~a~~~y~~N~~------------~~~~~Di~~~~~~~l~~~~D~l~gg 68 (335)
T PF00145_consen 2 KVIDLFSGIGGFSLGLEQA-GFEVVWAVEIDPDACETYKANFP------------EVICGDITEIDPSDLPKDVDLLIGG 68 (335)
T ss_dssp EEEEET-TTTHHHHHHHHT-TEEEEEEEESSHHHHHHHHHHHT------------EEEESHGGGCHHHHHHHT-SEEEEE
T ss_pred cEEEEccCccHHHHHHHhc-CcEEEEEeecCHHHHHhhhhccc------------ccccccccccccccccccceEEEec
Confidence 6899999999999998873 23479999999999998888762 77889999871 11169999865
Q ss_pred CCCCC----CC----CC--CCCcHHHHHHHHhhccCCcEEEEEecCCCccccccccchhHHHHHHHHHHHH
Q 035593 157 LFSKG----SL----LS--ELEDPNTWEKLRQCLRKGGRIMVNVGGSCVEAEDSRRDGKVVMEATLKAMHK 217 (269)
Q Consensus 157 ~~~~~----~~----~~--~l~~~e~~~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 217 (269)
.+-.. .. .. .-.-.++++.+ +.++|.-+++=|+.+-.. . .....+..+++.|.+
T Consensus 69 pPCQ~fS~ag~~~~~~d~r~~L~~~~~~~v-~~~~Pk~~~~ENV~~l~~-----~-~~~~~~~~i~~~l~~ 132 (335)
T PF00145_consen 69 PPCQGFSIAGKRKGFDDPRNSLFFEFLRIV-KELKPKYFLLENVPGLLS-----S-KNGEVFKEILEELEE 132 (335)
T ss_dssp ---TTTSTTSTHHCCCCHTTSHHHHHHHHH-HHHS-SEEEEEEEGGGGT-----G-GGHHHHHHHHHHHHH
T ss_pred cCCceEeccccccccccccchhhHHHHHHH-hhccceEEEecccceeec-----c-ccccccccccccccc
Confidence 43221 10 00 10112444444 557897777778865422 0 112345666666655
No 396
>PLN02353 probable UDP-glucose 6-dehydrogenase
Probab=88.33 E-value=2 Score=40.82 Aligned_cols=107 Identities=11% Similarity=-0.018 Sum_probs=58.4
Q ss_pred cEEEEcCcccHHHHH--HHHHCCCceEEEEECChHHHHHHHHhcCccccccCCCCcEEEE----Eccccccc-----cCC
Q 035593 80 PIGILGFGAGSAARL--ILDLYPEAVIHGWELDPSVIKVAREFFALEKLEKSYPDRLFVY----VGNALKAS-----LKD 148 (269)
Q Consensus 80 ~VL~iG~G~G~~~~~--l~~~~p~~~v~~vEidp~~~~~a~~~~~~~~~~~~~~~rv~~~----~~D~~~~~-----~~~ 148 (269)
+|.+||+|...++.. ++++..+.+|+++|+|++.++..++-.. +- ..+.+.-+ .+.-..+. .-.
T Consensus 3 ~I~ViG~GyvGl~~A~~lA~~g~g~~V~gvD~~~~~v~~l~~g~~-~~----~e~gl~ell~~~~~~~l~~t~~~~~~i~ 77 (473)
T PLN02353 3 KICCIGAGYVGGPTMAVIALKCPDIEVVVVDISVPRIDAWNSDQL-PI----YEPGLDEVVKQCRGKNLFFSTDVEKHVA 77 (473)
T ss_pred EEEEECCCHHHHHHHHHHHhcCCCCeEEEEECCHHHHHHHHcCCC-cc----CCCCHHHHHHHhhcCCEEEEcCHHHHHh
Confidence 689999996655544 4442235789999999999988765421 10 00111100 01001111 124
Q ss_pred CeeEEEEcCCCCCC--------CCCCCCcHHHHHHHHhhccCCcEEEEEec
Q 035593 149 GFSGILVDLFSKGS--------LLSELEDPNTWEKLRQCLRKGGRIMVNVG 191 (269)
Q Consensus 149 ~yD~I~~d~~~~~~--------~~~~l~~~e~~~~~~~~L~pgG~l~~~~~ 191 (269)
.-|+||+....+.. .+..-+-.+..+.+.+.|++|-++++-..
T Consensus 78 ~advi~I~V~TP~~~~g~~~~~~~Dls~v~~a~~~i~~~l~~~~lVv~~ST 128 (473)
T PLN02353 78 EADIVFVSVNTPTKTRGLGAGKAADLTYWESAARMIADVSKSDKIVVEKST 128 (473)
T ss_pred cCCEEEEEeCCCCCCCCCcCCCCCcHHHHHHHHHHHHhhCCCCcEEEEeCC
Confidence 57899887643321 11111235777888888887555554443
No 397
>PRK08229 2-dehydropantoate 2-reductase; Provisional
Probab=88.30 E-value=4.1 Score=36.57 Aligned_cols=97 Identities=14% Similarity=0.037 Sum_probs=51.2
Q ss_pred CcEEEEcCc--ccHHHHHHHHHCCCceEEEEECChHHHHHHHHhcCccccccCCCCcEEEEEcccc---ccccCCCeeEE
Q 035593 79 GPIGILGFG--AGSAARLILDLYPEAVIHGWELDPSVIKVAREFFALEKLEKSYPDRLFVYVGNAL---KASLKDGFSGI 153 (269)
Q Consensus 79 ~~VL~iG~G--~G~~~~~l~~~~p~~~v~~vEidp~~~~~a~~~~~~~~~~~~~~~rv~~~~~D~~---~~~~~~~yD~I 153 (269)
.+|..||+| ++.++..|++ .+.+|+.++.++.. +..++. +..... ....+......... +......+|+|
T Consensus 3 mkI~IiG~G~mG~~~A~~L~~--~G~~V~~~~r~~~~-~~~~~~-g~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~D~v 77 (341)
T PRK08229 3 ARICVLGAGSIGCYLGGRLAA--AGADVTLIGRARIG-DELRAH-GLTLTD-YRGRDVRVPPSAIAFSTDPAALATADLV 77 (341)
T ss_pred ceEEEECCCHHHHHHHHHHHh--cCCcEEEEecHHHH-HHHHhc-Cceeec-CCCcceecccceeEeccChhhccCCCEE
Confidence 369999998 4455555555 36789999987643 333332 211000 00001111000000 01223579999
Q ss_pred EEcCCCCCCCCCCCCcHHHHHHHHhhccCCcEEE
Q 035593 154 LVDLFSKGSLLSELEDPNTWEKLRQCLRKGGRIM 187 (269)
Q Consensus 154 ~~d~~~~~~~~~~l~~~e~~~~~~~~L~pgG~l~ 187 (269)
++...... ..+.++.+...++++-+++
T Consensus 78 il~vk~~~-------~~~~~~~l~~~~~~~~iii 104 (341)
T PRK08229 78 LVTVKSAA-------TADAAAALAGHARPGAVVV 104 (341)
T ss_pred EEEecCcc-------hHHHHHHHHhhCCCCCEEE
Confidence 98653321 3678888888887766543
No 398
>cd08245 CAD Cinnamyl alcohol dehydrogenases (CAD) and related proteins. Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an
Probab=88.25 E-value=7.8 Score=34.22 Aligned_cols=93 Identities=24% Similarity=0.219 Sum_probs=58.5
Q ss_pred CCCCCcEEEEcCc-ccHHHHHHHHHCCCceEEEEECChHHHHHHHHhcCccccccCCCCcEEEEEcccccc--ccCCCee
Q 035593 75 ILPPGPIGILGFG-AGSAARLILDLYPEAVIHGWELDPSVIKVAREFFALEKLEKSYPDRLFVYVGNALKA--SLKDGFS 151 (269)
Q Consensus 75 l~~~~~VL~iG~G-~G~~~~~l~~~~p~~~v~~vEidp~~~~~a~~~~~~~~~~~~~~~rv~~~~~D~~~~--~~~~~yD 151 (269)
+.+..+||++|+| .|..+..+++. .+.+|+++..+++..+.+++ ++.. .++..+-... ...+.+|
T Consensus 160 ~~~~~~vlI~g~g~iG~~~~~~a~~-~G~~v~~~~~~~~~~~~~~~-~g~~----------~~~~~~~~~~~~~~~~~~d 227 (330)
T cd08245 160 PRPGERVAVLGIGGLGHLAVQYARA-MGFETVAITRSPDKRELARK-LGAD----------EVVDSGAELDEQAAAGGAD 227 (330)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHH-CCCEEEEEeCCHHHHHHHHH-hCCc----------EEeccCCcchHHhccCCCC
Confidence 4457889999876 55555556664 36789999999998888855 3321 1111110011 1224689
Q ss_pred EEEEcCCCCCCCCCCCCcHHHHHHHHhhccCCcEEEEE
Q 035593 152 GILVDLFSKGSLLSELEDPNTWEKLRQCLRKGGRIMVN 189 (269)
Q Consensus 152 ~I~~d~~~~~~~~~~l~~~e~~~~~~~~L~pgG~l~~~ 189 (269)
+++. ... .......+.+.|+++|.++.-
T Consensus 228 ~vi~-~~~---------~~~~~~~~~~~l~~~G~~i~~ 255 (330)
T cd08245 228 VILV-TVV---------SGAAAEAALGGLRRGGRIVLV 255 (330)
T ss_pred EEEE-CCC---------cHHHHHHHHHhcccCCEEEEE
Confidence 8873 321 235678888999999988764
No 399
>PTZ00142 6-phosphogluconate dehydrogenase; Provisional
Probab=88.14 E-value=5.5 Score=37.86 Aligned_cols=98 Identities=14% Similarity=0.071 Sum_probs=59.8
Q ss_pred cEEEEcCc--ccHHHHHHHHHCCCceEEEEECChHHHHHHHHhcCccccccCCCCcEEEEEcccccc-ccCCCeeEEEEc
Q 035593 80 PIGILGFG--AGSAARLILDLYPEAVIHGWELDPSVIKVAREFFALEKLEKSYPDRLFVYVGNALKA-SLKDGFSGILVD 156 (269)
Q Consensus 80 ~VL~iG~G--~G~~~~~l~~~~p~~~v~~vEidp~~~~~a~~~~~~~~~~~~~~~rv~~~~~D~~~~-~~~~~yD~I~~d 156 (269)
+|..||+| ++.++..|++ .+.+|++.+.+++.++...+..... ...++ ...+..++ ..-++.|+|++-
T Consensus 3 ~IgvIGLG~MG~~lA~nL~~--~G~~V~v~dr~~~~~~~l~~~~~~~------g~~i~-~~~s~~e~v~~l~~~d~Iil~ 73 (470)
T PTZ00142 3 DIGLIGLAVMGQNLALNIAS--RGFKISVYNRTYEKTEEFVKKAKEG------NTRVK-GYHTLEELVNSLKKPRKVILL 73 (470)
T ss_pred EEEEEeEhHHHHHHHHHHHH--CCCeEEEEeCCHHHHHHHHHhhhhc------CCcce-ecCCHHHHHhcCCCCCEEEEE
Confidence 68889988 4455566655 4679999999999987765532110 01121 22344444 222357888775
Q ss_pred CCCCCCCCCCCCcHHHHHHHHhhccCCcEEEEEecCC
Q 035593 157 LFSKGSLLSELEDPNTWEKLRQCLRKGGRIMVNVGGS 193 (269)
Q Consensus 157 ~~~~~~~~~~l~~~e~~~~~~~~L~pgG~l~~~~~~~ 193 (269)
+.+.. ...+.++.+...|++| .++++..+.
T Consensus 74 v~~~~------~v~~vi~~l~~~L~~g-~iIID~gn~ 103 (470)
T PTZ00142 74 IKAGE------AVDETIDNLLPLLEKG-DIIIDGGNE 103 (470)
T ss_pred eCChH------HHHHHHHHHHhhCCCC-CEEEECCCC
Confidence 44332 2467788888888875 556777655
No 400
>cd08231 MDR_TM0436_like Hypothetical enzyme TM0436 resembles the zinc-dependent alcohol dehydrogenases (ADH). This group contains the hypothetical TM0436 alcohol dehydrogenase from Thermotoga maritima, proteins annotated as 5-exo-alcohol dehydrogenase, and other members of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. MDR, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quino
Probab=88.14 E-value=3.9 Score=36.83 Aligned_cols=95 Identities=18% Similarity=0.153 Sum_probs=56.6
Q ss_pred CCCCcEEEEcCc-ccHHHHHHHHHCCCc-eEEEEECChHHHHHHHHhcCccccccCCCCcEEEEEccc----ccc---cc
Q 035593 76 LPPGPIGILGFG-AGSAARLILDLYPEA-VIHGWELDPSVIKVAREFFALEKLEKSYPDRLFVYVGNA----LKA---SL 146 (269)
Q Consensus 76 ~~~~~VL~iG~G-~G~~~~~l~~~~p~~-~v~~vEidp~~~~~a~~~~~~~~~~~~~~~rv~~~~~D~----~~~---~~ 146 (269)
.+..+||+.|+| .|..+..+++.. +. +|++++.+++-.+.+++ ++.... +.....+. ... ..
T Consensus 176 ~~g~~vlI~g~g~vG~~~~~lak~~-G~~~v~~~~~~~~~~~~~~~-~g~~~v-------i~~~~~~~~~~~~~i~~~~~ 246 (361)
T cd08231 176 GAGDTVVVQGAGPLGLYAVAAAKLA-GARRVIVIDGSPERLELARE-FGADAT-------IDIDELPDPQRRAIVRDITG 246 (361)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHc-CCCeEEEEcCCHHHHHHHHH-cCCCeE-------EcCcccccHHHHHHHHHHhC
Confidence 367889999764 233344555543 66 89999999988888764 443210 11100111 011 23
Q ss_pred CCCeeEEEEcCCCCCCCCCCCCcHHHHHHHHhhccCCcEEEEE
Q 035593 147 KDGFSGILVDLFSKGSLLSELEDPNTWEKLRQCLRKGGRIMVN 189 (269)
Q Consensus 147 ~~~yD~I~~d~~~~~~~~~~l~~~e~~~~~~~~L~pgG~l~~~ 189 (269)
...+|+|+-.. . ....+....+.|+++|.++.-
T Consensus 247 ~~~~d~vid~~-g---------~~~~~~~~~~~l~~~G~~v~~ 279 (361)
T cd08231 247 GRGADVVIEAS-G---------HPAAVPEGLELLRRGGTYVLV 279 (361)
T ss_pred CCCCcEEEECC-C---------ChHHHHHHHHHhccCCEEEEE
Confidence 45799887322 1 134677788899999999754
No 401
>COG1565 Uncharacterized conserved protein [Function unknown]
Probab=88.14 E-value=1 Score=40.89 Aligned_cols=44 Identities=27% Similarity=0.308 Sum_probs=36.6
Q ss_pred CCcEEEEcCcccHHHHHHHHH----CC----CceEEEEECChHHHHHHHHhc
Q 035593 78 PGPIGILGFGAGSAARLILDL----YP----EAVIHGWELDPSVIKVAREFF 121 (269)
Q Consensus 78 ~~~VL~iG~G~G~~~~~l~~~----~p----~~~v~~vEidp~~~~~a~~~~ 121 (269)
+..+++||.|.|.+++-+++. +| ..++..||+||+..+.=++.+
T Consensus 78 ~~~lvEiGaG~G~l~~DiL~~l~~L~P~~~~~~~~~iiE~s~~L~~~Qk~~L 129 (370)
T COG1565 78 PLKLVEIGAGRGTLASDILRTLRRLYPELYEALSYYIIEPSPELRARQKETL 129 (370)
T ss_pred CceEEEeCCCcChHHHHHHHHHHHhCHHHHhcceEEEEecCHHHHHHHHHHH
Confidence 678999999999999877764 34 579999999999988766655
No 402
>cd08242 MDR_like Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. This group contains members identified as related to zinc-dependent alcohol dehydrogenase and other members of the MDR family, including threonine dehydrogenase. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group includes various activities, including the founding alcohol dehydrogenase (ADH), quinone reducta
Probab=88.13 E-value=6.3 Score=34.66 Aligned_cols=88 Identities=22% Similarity=0.288 Sum_probs=57.4
Q ss_pred CCCCCcEEEEcCcccHHHHHH---HHHCCCceEEEEECChHHHHHHHHhcCccccccCCCCcEEEEEccccccccCCCee
Q 035593 75 ILPPGPIGILGFGAGSAARLI---LDLYPEAVIHGWELDPSVIKVAREFFALEKLEKSYPDRLFVYVGNALKASLKDGFS 151 (269)
Q Consensus 75 l~~~~~VL~iG~G~G~~~~~l---~~~~p~~~v~~vEidp~~~~~a~~~~~~~~~~~~~~~rv~~~~~D~~~~~~~~~yD 151 (269)
+.+..+||..|+ |.++..+ ++. -+.+|+++..+++..+.+++ ++... +... ......+.+|
T Consensus 153 ~~~g~~vlV~g~--g~vg~~~~q~a~~-~G~~vi~~~~~~~~~~~~~~-~g~~~--------~~~~----~~~~~~~~~d 216 (319)
T cd08242 153 ITPGDKVAVLGD--GKLGLLIAQVLAL-TGPDVVLVGRHSEKLALARR-LGVET--------VLPD----EAESEGGGFD 216 (319)
T ss_pred CCCCCEEEEECC--CHHHHHHHHHHHH-cCCeEEEEcCCHHHHHHHHH-cCCcE--------EeCc----cccccCCCCC
Confidence 456789999975 4455444 443 37789999999999999887 55321 0000 1112345699
Q ss_pred EEEEcCCCCCCCCCCCCcHHHHHHHHhhccCCcEEEE
Q 035593 152 GILVDLFSKGSLLSELEDPNTWEKLRQCLRKGGRIMV 188 (269)
Q Consensus 152 ~I~~d~~~~~~~~~~l~~~e~~~~~~~~L~pgG~l~~ 188 (269)
+|+- ... ....++.+.++|+++|.++.
T Consensus 217 ~vid-~~g---------~~~~~~~~~~~l~~~g~~v~ 243 (319)
T cd08242 217 VVVE-ATG---------SPSGLELALRLVRPRGTVVL 243 (319)
T ss_pred EEEE-CCC---------ChHHHHHHHHHhhcCCEEEE
Confidence 9873 321 23577888889999998886
No 403
>cd05279 Zn_ADH1 Liver alcohol dehydrogenase and related zinc-dependent alcohol dehydrogenases. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall
Probab=88.09 E-value=5.8 Score=35.95 Aligned_cols=96 Identities=14% Similarity=0.211 Sum_probs=57.7
Q ss_pred CCCCCcEEEEcCc-ccHHHHHHHHHCCCc-eEEEEECChHHHHHHHHhcCccccccCCCCcEEEEEc--cccc-c--ccC
Q 035593 75 ILPPGPIGILGFG-AGSAARLILDLYPEA-VIHGWELDPSVIKVAREFFALEKLEKSYPDRLFVYVG--NALK-A--SLK 147 (269)
Q Consensus 75 l~~~~~VL~iG~G-~G~~~~~l~~~~p~~-~v~~vEidp~~~~~a~~~~~~~~~~~~~~~rv~~~~~--D~~~-~--~~~ 147 (269)
+.+..+||+.|+| .|..+..+++.. +. .|++++.+++-.+.+++ ++... -+..... +..+ . ...
T Consensus 181 ~~~g~~vlI~g~g~vG~~a~~~a~~~-G~~~v~~~~~~~~~~~~~~~-~g~~~-------~v~~~~~~~~~~~~l~~~~~ 251 (365)
T cd05279 181 VTPGSTCAVFGLGGVGLSVIMGCKAA-GASRIIAVDINKDKFEKAKQ-LGATE-------CINPRDQDKPIVEVLTEMTD 251 (365)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHc-CCCeEEEEeCCHHHHHHHHH-hCCCe-------ecccccccchHHHHHHHHhC
Confidence 4567899998764 333444455544 55 58899989988888855 44321 1111111 2111 1 123
Q ss_pred CCeeEEEEcCCCCCCCCCCCCcHHHHHHHHhhcc-CCcEEEEE
Q 035593 148 DGFSGILVDLFSKGSLLSELEDPNTWEKLRQCLR-KGGRIMVN 189 (269)
Q Consensus 148 ~~yD~I~~d~~~~~~~~~~l~~~e~~~~~~~~L~-pgG~l~~~ 189 (269)
+.+|+|+ |... ....+..+.+.|+ ++|.++.-
T Consensus 252 ~~~d~vi-d~~g---------~~~~~~~~~~~l~~~~G~~v~~ 284 (365)
T cd05279 252 GGVDYAF-EVIG---------SADTLKQALDATRLGGGTSVVV 284 (365)
T ss_pred CCCcEEE-ECCC---------CHHHHHHHHHHhccCCCEEEEE
Confidence 5799988 4321 1357778888899 99988764
No 404
>TIGR00675 dcm DNA-methyltransferase (dcm). All proteins in this family for which functions are known are DNA-cytosine methyltransferases. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=87.98 E-value=1.4 Score=39.54 Aligned_cols=64 Identities=20% Similarity=0.065 Sum_probs=48.0
Q ss_pred EEEEcCcccHHHHHHHHHCCCce-EEEEECChHHHHHHHHhcCccccccCCCCcEEEEEccccccc--cCCCeeEEEEcC
Q 035593 81 IGILGFGAGSAARLILDLYPEAV-IHGWELDPSVIKVAREFFALEKLEKSYPDRLFVYVGNALKAS--LKDGFSGILVDL 157 (269)
Q Consensus 81 VL~iG~G~G~~~~~l~~~~p~~~-v~~vEidp~~~~~a~~~~~~~~~~~~~~~rv~~~~~D~~~~~--~~~~yD~I~~d~ 157 (269)
|+++-||.|.+..-+.+ .+.+ +.++|+|+..++.-+.++. . .++.+|..++. .-...|+++...
T Consensus 1 vidLF~G~GG~~~Gl~~--aG~~~~~a~e~~~~a~~ty~~N~~----------~-~~~~~Di~~~~~~~~~~~dvl~gg~ 67 (315)
T TIGR00675 1 FIDLFAGIGGIRLGFEQ--AGFKCVFASEIDKYAQKTYEANFG----------N-KVPFGDITKISPSDIPDFDILLGGF 67 (315)
T ss_pred CEEEecCccHHHHHHHH--cCCeEEEEEeCCHHHHHHHHHhCC----------C-CCCccChhhhhhhhCCCcCEEEecC
Confidence 57899999999988876 3454 5679999999999888863 1 44567887772 234689998653
No 405
>TIGR02819 fdhA_non_GSH formaldehyde dehydrogenase, glutathione-independent. Members of this family represent a distinct clade within the larger family of zinc-dependent dehydrogenases of medium chain alcohols, a family that also includes the so-called glutathione-dependent formaldehyde dehydrogenase. Members of this protein family have a tightly bound NAD that can act as a true cofactor, rather than a cosubstrate in dehydrogenase reactions, in dismutase reactions for some aldehydes. The name given to this family, however, is formaldehyde dehydrogenase, glutathione-independent.
Probab=87.94 E-value=7.5 Score=35.87 Aligned_cols=104 Identities=21% Similarity=0.171 Sum_probs=59.3
Q ss_pred CCCCCcEEEEcCc-ccHHHHHHHHHCCCceEEEEECChHHHHHHHHhcCccccccCCCCcEEEEEc---cccc-c---cc
Q 035593 75 ILPPGPIGILGFG-AGSAARLILDLYPEAVIHGWELDPSVIKVAREFFALEKLEKSYPDRLFVYVG---NALK-A---SL 146 (269)
Q Consensus 75 l~~~~~VL~iG~G-~G~~~~~l~~~~p~~~v~~vEidp~~~~~a~~~~~~~~~~~~~~~rv~~~~~---D~~~-~---~~ 146 (269)
+.+..+||+.|+| .|.++..+++......|.++|.+++-.+.|++ ++.. .+... +..+ . ..
T Consensus 183 ~~~g~~VlV~G~G~iG~~aiqlAk~~Ga~~vi~~d~~~~r~~~a~~-~Ga~----------~v~~~~~~~~~~~v~~~~~ 251 (393)
T TIGR02819 183 VGPGSTVYIAGAGPVGLAAAASAQLLGAAVVIVGDLNPARLAQARS-FGCE----------TVDLSKDATLPEQIEQILG 251 (393)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCceEEEeCCCHHHHHHHHH-cCCe----------EEecCCcccHHHHHHHHcC
Confidence 4567889887765 34444556665433346677999988999887 3421 12111 1111 1 22
Q ss_pred CCCeeEEEEcCCCCCCC--C---CCCCcHHHHHHHHhhccCCcEEEEEe
Q 035593 147 KDGFSGILVDLFSKGSL--L---SELEDPNTWEKLRQCLRKGGRIMVNV 190 (269)
Q Consensus 147 ~~~yD~I~~d~~~~~~~--~---~~l~~~e~~~~~~~~L~pgG~l~~~~ 190 (269)
...+|+|+- +...... . ..-.....++.+.+.++++|.+++--
T Consensus 252 ~~g~Dvvid-~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~i~~~G 299 (393)
T TIGR02819 252 EPEVDCAVD-CVGFEARGHGHDGKKEAPATVLNSLMEVTRVGGAIGIPG 299 (393)
T ss_pred CCCCcEEEE-CCCCccccccccccccchHHHHHHHHHHhhCCCEEEEee
Confidence 346898873 3322100 0 00011247888899999999998744
No 406
>TIGR00873 gnd 6-phosphogluconate dehydrogenase, decarboxylating. This model does not specify whether the cofactor is NADP only (EC 1.1.1.44), NAD only, or both. The model does not assign an EC number for that reason.
Probab=87.82 E-value=8.7 Score=36.51 Aligned_cols=96 Identities=16% Similarity=0.148 Sum_probs=57.7
Q ss_pred EEEEcCc--ccHHHHHHHHHCCCceEEEEECChHHHHHHHHhcCccccccCCCCcEEEEEcccccc-ccCCCeeEEEEcC
Q 035593 81 IGILGFG--AGSAARLILDLYPEAVIHGWELDPSVIKVAREFFALEKLEKSYPDRLFVYVGNALKA-SLKDGFSGILVDL 157 (269)
Q Consensus 81 VL~iG~G--~G~~~~~l~~~~p~~~v~~vEidp~~~~~a~~~~~~~~~~~~~~~rv~~~~~D~~~~-~~~~~yD~I~~d~ 157 (269)
|-.||+| ++.+++.|++ .+.+|++.+.+++.++...+.... ...+.. ..+..++ ..-.+.|+|++.+
T Consensus 2 IG~IGLG~MG~~mA~nL~~--~G~~V~v~drt~~~~~~l~~~~~~-------g~~~~~-~~s~~e~v~~l~~~dvIil~v 71 (467)
T TIGR00873 2 IGVIGLAVMGSNLALNMAD--HGFTVSVYNRTPEKTDEFLAEHAK-------GKKIVG-AYSIEEFVQSLERPRKIMLMV 71 (467)
T ss_pred EEEEeeHHHHHHHHHHHHh--cCCeEEEEeCCHHHHHHHHhhccC-------CCCcee-cCCHHHHHhhcCCCCEEEEEC
Confidence 6678887 4455555555 367999999999988776653210 011211 1233333 2234578888765
Q ss_pred CCCCCCCCCCCcHHHHHHHHhhccCCcEEEEEecCC
Q 035593 158 FSKGSLLSELEDPNTWEKLRQCLRKGGRIMVNVGGS 193 (269)
Q Consensus 158 ~~~~~~~~~l~~~e~~~~~~~~L~pgG~l~~~~~~~ 193 (269)
.+.. ...+.+..+...|++| -++++..+.
T Consensus 72 ~~~~------~v~~Vi~~l~~~L~~g-~iIID~gns 100 (467)
T TIGR00873 72 KAGA------PVDAVINQLLPLLEKG-DIIIDGGNS 100 (467)
T ss_pred CCcH------HHHHHHHHHHhhCCCC-CEEEECCCc
Confidence 4421 1457778888888875 566777654
No 407
>cd08301 alcohol_DH_plants Plant alcohol dehydrogenase. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall structural similarity, but differ in the
Probab=87.70 E-value=5.4 Score=36.15 Aligned_cols=97 Identities=18% Similarity=0.226 Sum_probs=58.5
Q ss_pred CCCCCcEEEEcCc-ccHHHHHHHHHCCCc-eEEEEECChHHHHHHHHhcCccccccCCCCcEEEEEc--cccc-c--ccC
Q 035593 75 ILPPGPIGILGFG-AGSAARLILDLYPEA-VIHGWELDPSVIKVAREFFALEKLEKSYPDRLFVYVG--NALK-A--SLK 147 (269)
Q Consensus 75 l~~~~~VL~iG~G-~G~~~~~l~~~~p~~-~v~~vEidp~~~~~a~~~~~~~~~~~~~~~rv~~~~~--D~~~-~--~~~ 147 (269)
+.+..+||+.|+| .|.++..+++.. +. +|++++.+++-.+.+++ ++... -+..... +..+ . ...
T Consensus 185 ~~~g~~VlV~G~g~vG~~a~q~ak~~-G~~~vi~~~~~~~~~~~~~~-~Ga~~-------~i~~~~~~~~~~~~v~~~~~ 255 (369)
T cd08301 185 VKKGSTVAIFGLGAVGLAVAEGARIR-GASRIIGVDLNPSKFEQAKK-FGVTE-------FVNPKDHDKPVQEVIAEMTG 255 (369)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHc-CCCeEEEEcCCHHHHHHHHH-cCCce-------EEcccccchhHHHHHHHHhC
Confidence 4568899999864 334445566654 55 89999999999999866 44211 0111100 1111 1 123
Q ss_pred CCeeEEEEcCCCCCCCCCCCCcHHHHHHHHhhccCC-cEEEEEe
Q 035593 148 DGFSGILVDLFSKGSLLSELEDPNTWEKLRQCLRKG-GRIMVNV 190 (269)
Q Consensus 148 ~~yD~I~~d~~~~~~~~~~l~~~e~~~~~~~~L~pg-G~l~~~~ 190 (269)
+.+|+++ |... ....+..+.+.++++ |.+++.-
T Consensus 256 ~~~d~vi-d~~G---------~~~~~~~~~~~~~~~~g~~v~~g 289 (369)
T cd08301 256 GGVDYSF-ECTG---------NIDAMISAFECVHDGWGVTVLLG 289 (369)
T ss_pred CCCCEEE-ECCC---------ChHHHHHHHHHhhcCCCEEEEEC
Confidence 3689887 4321 245777788899996 8887644
No 408
>cd08233 butanediol_DH_like (2R,3R)-2,3-butanediol dehydrogenase. (2R,3R)-2,3-butanediol dehydrogenase, a zinc-dependent medium chain alcohol dehydrogenase, catalyzes the NAD(+)-dependent oxidation of (2R,3R)-2,3-butanediol and meso-butanediol to acetoin. BDH functions as a homodimer. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit.
Probab=87.54 E-value=4.5 Score=36.26 Aligned_cols=97 Identities=19% Similarity=0.060 Sum_probs=58.4
Q ss_pred CCCCCcEEEEcCc-ccHHHHHHHHHCCCc-eEEEEECChHHHHHHHHhcCccccccCCCCcEEEEEccccc----cccCC
Q 035593 75 ILPPGPIGILGFG-AGSAARLILDLYPEA-VIHGWELDPSVIKVAREFFALEKLEKSYPDRLFVYVGNALK----ASLKD 148 (269)
Q Consensus 75 l~~~~~VL~iG~G-~G~~~~~l~~~~p~~-~v~~vEidp~~~~~a~~~~~~~~~~~~~~~rv~~~~~D~~~----~~~~~ 148 (269)
+.+..+||..|+| .|..+..+++.. +. +|.+++.+++-.+.+++. +... -+.....+..+ ....+
T Consensus 170 ~~~g~~vlI~g~g~vG~~a~q~a~~~-G~~~v~~~~~~~~~~~~~~~~-ga~~-------~i~~~~~~~~~~l~~~~~~~ 240 (351)
T cd08233 170 FKPGDTALVLGAGPIGLLTILALKAA-GASKIIVSEPSEARRELAEEL-GATI-------VLDPTEVDVVAEVRKLTGGG 240 (351)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHc-CCCEEEEECCCHHHHHHHHHh-CCCE-------EECCCccCHHHHHHHHhCCC
Confidence 4567899999754 233444455543 66 899999999998888663 4211 01111112111 12234
Q ss_pred CeeEEEEcCCCCCCCCCCCCcHHHHHHHHhhccCCcEEEEEe
Q 035593 149 GFSGILVDLFSKGSLLSELEDPNTWEKLRQCLRKGGRIMVNV 190 (269)
Q Consensus 149 ~yD~I~~d~~~~~~~~~~l~~~e~~~~~~~~L~pgG~l~~~~ 190 (269)
.+|+|+-. .. ....++.+.+.|+++|.++.-.
T Consensus 241 ~~d~vid~-~g---------~~~~~~~~~~~l~~~G~~v~~g 272 (351)
T cd08233 241 GVDVSFDC-AG---------VQATLDTAIDALRPRGTAVNVA 272 (351)
T ss_pred CCCEEEEC-CC---------CHHHHHHHHHhccCCCEEEEEc
Confidence 59999842 21 1356788889999999887643
No 409
>PRK12490 6-phosphogluconate dehydrogenase-like protein; Reviewed
Probab=87.51 E-value=5.7 Score=35.21 Aligned_cols=92 Identities=20% Similarity=0.303 Sum_probs=54.6
Q ss_pred cEEEEcCcc--cHHHHHHHHHCCCceEEEEECChHHHHHHHHhcCccccccCCCCcEEEEEcccccc-ccCCCeeEEEEc
Q 035593 80 PIGILGFGA--GSAARLILDLYPEAVIHGWELDPSVIKVAREFFALEKLEKSYPDRLFVYVGNALKA-SLKDGFSGILVD 156 (269)
Q Consensus 80 ~VL~iG~G~--G~~~~~l~~~~p~~~v~~vEidp~~~~~a~~~~~~~~~~~~~~~rv~~~~~D~~~~-~~~~~yD~I~~d 156 (269)
+|..||+|. ..++..+++ .+.+|++.|.+++..+.+++. + ++. ..+..+. ......|+|++.
T Consensus 2 ~Ig~IGlG~mG~~mA~~L~~--~g~~v~v~dr~~~~~~~~~~~-g-----------~~~-~~s~~~~~~~~~~advVi~~ 66 (299)
T PRK12490 2 KLGLIGLGKMGGNMAERLRE--DGHEVVGYDVNQEAVDVAGKL-G-----------ITA-RHSLEELVSKLEAPRTIWVM 66 (299)
T ss_pred EEEEEcccHHHHHHHHHHHh--CCCEEEEEECCHHHHHHHHHC-C-----------Cee-cCCHHHHHHhCCCCCEEEEE
Confidence 578888873 445556555 467899999999877665432 2 111 1222222 222236899876
Q ss_pred CCCCCCCCCCCCcHHHHHHHHhhccCCcEEEEEecCC
Q 035593 157 LFSKGSLLSELEDPNTWEKLRQCLRKGGRIMVNVGGS 193 (269)
Q Consensus 157 ~~~~~~~~~~l~~~e~~~~~~~~L~pgG~l~~~~~~~ 193 (269)
..+.. ..++.+..+...|++ |.+++++.+.
T Consensus 67 vp~~~------~~~~v~~~i~~~l~~-g~ivid~st~ 96 (299)
T PRK12490 67 VPAGE------VTESVIKDLYPLLSP-GDIVVDGGNS 96 (299)
T ss_pred ecCch------HHHHHHHHHhccCCC-CCEEEECCCC
Confidence 55431 135667777777876 4566777544
No 410
>PRK13699 putative methylase; Provisional
Probab=87.37 E-value=1.3 Score=37.84 Aligned_cols=44 Identities=20% Similarity=0.114 Sum_probs=39.1
Q ss_pred CCCcEEEEcCcccHHHHHHHHHCCCceEEEEECChHHHHHHHHhcC
Q 035593 77 PPGPIGILGFGAGSAARLILDLYPEAVIHGWELDPSVIKVAREFFA 122 (269)
Q Consensus 77 ~~~~VL~iG~G~G~~~~~l~~~~p~~~v~~vEidp~~~~~a~~~~~ 122 (269)
+...|||-=||+|+.+.+..+ -+.+..++|++++..+.|.+++.
T Consensus 163 ~g~~vlDpf~Gsgtt~~aa~~--~~r~~~g~e~~~~y~~~~~~r~~ 206 (227)
T PRK13699 163 PNAIVLDPFAGSGSTCVAALQ--SGRRYIGIELLEQYHRAGQQRLA 206 (227)
T ss_pred CCCEEEeCCCCCCHHHHHHHH--cCCCEEEEecCHHHHHHHHHHHH
Confidence 678899999999999999887 37789999999999999988863
No 411
>cd08234 threonine_DH_like L-threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine, via NAD(H)-dependent oxidation. THD is a member of the zinc-requiring, medium chain NAD(H)-dependent alcohol dehydrogenase family (MDR). MDRs have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose.
Probab=87.36 E-value=8.3 Score=34.07 Aligned_cols=95 Identities=20% Similarity=0.228 Sum_probs=59.7
Q ss_pred CCCCCCcEEEEcCc-ccHHHHHHHHHCCCce-EEEEECChHHHHHHHHhcCccccccCCCCcEEEEEccccc-----ccc
Q 035593 74 PILPPGPIGILGFG-AGSAARLILDLYPEAV-IHGWELDPSVIKVAREFFALEKLEKSYPDRLFVYVGNALK-----ASL 146 (269)
Q Consensus 74 ~l~~~~~VL~iG~G-~G~~~~~l~~~~p~~~-v~~vEidp~~~~~a~~~~~~~~~~~~~~~rv~~~~~D~~~-----~~~ 146 (269)
.+.+..+||++|+| .|..+..+++.. +.+ |.+++.+++..+.+++. +.. .++..+-.. ...
T Consensus 156 ~~~~g~~vlI~g~g~vg~~~~~la~~~-G~~~v~~~~~~~~~~~~~~~~-g~~----------~~~~~~~~~~~~~~~~~ 223 (334)
T cd08234 156 GIKPGDSVLVFGAGPIGLLLAQLLKLN-GASRVTVAEPNEEKLELAKKL-GAT----------ETVDPSREDPEAQKEDN 223 (334)
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHc-CCcEEEEECCCHHHHHHHHHh-CCe----------EEecCCCCCHHHHHHhc
Confidence 34567899999865 245555566643 555 89999999988888653 321 122111111 123
Q ss_pred CCCeeEEEEcCCCCCCCCCCCCcHHHHHHHHhhccCCcEEEEEe
Q 035593 147 KDGFSGILVDLFSKGSLLSELEDPNTWEKLRQCLRKGGRIMVNV 190 (269)
Q Consensus 147 ~~~yD~I~~d~~~~~~~~~~l~~~e~~~~~~~~L~pgG~l~~~~ 190 (269)
.+.+|+|+.... ....+..+.+.|+++|.++.-.
T Consensus 224 ~~~vd~v~~~~~----------~~~~~~~~~~~l~~~G~~v~~g 257 (334)
T cd08234 224 PYGFDVVIEATG----------VPKTLEQAIEYARRGGTVLVFG 257 (334)
T ss_pred CCCCcEEEECCC----------ChHHHHHHHHHHhcCCEEEEEe
Confidence 457999984211 2367888889999999987643
No 412
>PRK06125 short chain dehydrogenase; Provisional
Probab=87.27 E-value=6.4 Score=33.54 Aligned_cols=76 Identities=7% Similarity=-0.054 Sum_probs=48.1
Q ss_pred CCCcEEEEcCcccHHHHHHHHHC--CCceEEEEECChHHHHHHHHhcCccccccCCCCcEEEEEcccccc-------ccC
Q 035593 77 PPGPIGILGFGAGSAARLILDLY--PEAVIHGWELDPSVIKVAREFFALEKLEKSYPDRLFVYVGNALKA-------SLK 147 (269)
Q Consensus 77 ~~~~VL~iG~G~G~~~~~l~~~~--p~~~v~~vEidp~~~~~a~~~~~~~~~~~~~~~rv~~~~~D~~~~-------~~~ 147 (269)
..+.+|+.|++ |.++..+.+.+ .+++|.+++.+++..+...+.+... ...++.++..|..+. ..-
T Consensus 6 ~~k~vlItG~~-~giG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~-----~~~~~~~~~~D~~~~~~~~~~~~~~ 79 (259)
T PRK06125 6 AGKRVLITGAS-KGIGAAAAEAFAAEGCHLHLVARDADALEALAADLRAA-----HGVDVAVHALDLSSPEAREQLAAEA 79 (259)
T ss_pred CCCEEEEeCCC-chHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhh-----cCCceEEEEecCCCHHHHHHHHHHh
Confidence 35788888864 44554444332 3779999999987666554433211 024678888888654 223
Q ss_pred CCeeEEEEcCC
Q 035593 148 DGFSGILVDLF 158 (269)
Q Consensus 148 ~~yD~I~~d~~ 158 (269)
++.|+++..+.
T Consensus 80 g~id~lv~~ag 90 (259)
T PRK06125 80 GDIDILVNNAG 90 (259)
T ss_pred CCCCEEEECCC
Confidence 57899987653
No 413
>COG1893 ApbA Ketopantoate reductase [Coenzyme metabolism]
Probab=87.08 E-value=5.4 Score=35.65 Aligned_cols=91 Identities=11% Similarity=0.013 Sum_probs=57.0
Q ss_pred cEEEEcCc--ccHHHHHHHHHCCCceEEEEECChHHHHHHHHhcCccccccCCCCcEEEEEccc----ccc-----ccCC
Q 035593 80 PIGILGFG--AGSAARLILDLYPEAVIHGWELDPSVIKVAREFFALEKLEKSYPDRLFVYVGNA----LKA-----SLKD 148 (269)
Q Consensus 80 ~VL~iG~G--~G~~~~~l~~~~p~~~v~~vEidp~~~~~a~~~~~~~~~~~~~~~rv~~~~~D~----~~~-----~~~~ 148 (269)
+|+++|+| ++.++..|.+ .+ ..|+.+=.++. ++.-++. ++ .+...+. ... ....
T Consensus 2 kI~IlGaGAvG~l~g~~L~~-~g-~~V~~~~R~~~-~~~l~~~-GL-----------~i~~~~~~~~~~~~~~~~~~~~~ 66 (307)
T COG1893 2 KILILGAGAIGSLLGARLAK-AG-HDVTLLVRSRR-LEALKKK-GL-----------RIEDEGGNFTTPVVAATDAEALG 66 (307)
T ss_pred eEEEECCcHHHHHHHHHHHh-CC-CeEEEEecHHH-HHHHHhC-Ce-----------EEecCCCccccccccccChhhcC
Confidence 79999999 4555555555 33 56777777666 4544443 32 2211111 100 2345
Q ss_pred CeeEEEEcCCCCCCCCCCCCcHHHHHHHHhhccCCcEEEEEecC
Q 035593 149 GFSGILVDLFSKGSLLSELEDPNTWEKLRQCLRKGGRIMVNVGG 192 (269)
Q Consensus 149 ~yD~I~~d~~~~~~~~~~l~~~e~~~~~~~~L~pgG~l~~~~~~ 192 (269)
.+|+|++..-+. .+.+.+..+...+++.-.+++.-.+
T Consensus 67 ~~Dlviv~vKa~-------q~~~al~~l~~~~~~~t~vl~lqNG 103 (307)
T COG1893 67 PADLVIVTVKAY-------QLEEALPSLAPLLGPNTVVLFLQNG 103 (307)
T ss_pred CCCEEEEEeccc-------cHHHHHHHhhhcCCCCcEEEEEeCC
Confidence 899999865433 3689999999999999877765443
No 414
>cd08277 liver_alcohol_DH_like Liver alcohol dehydrogenase. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall structural similarity, but differ i
Probab=87.06 E-value=7.2 Score=35.35 Aligned_cols=97 Identities=15% Similarity=0.207 Sum_probs=58.0
Q ss_pred CCCCCcEEEEcCc-ccHHHHHHHHHCCCc-eEEEEECChHHHHHHHHhcCccccccCCCCcEEEEEc--cccc-c--ccC
Q 035593 75 ILPPGPIGILGFG-AGSAARLILDLYPEA-VIHGWELDPSVIKVAREFFALEKLEKSYPDRLFVYVG--NALK-A--SLK 147 (269)
Q Consensus 75 l~~~~~VL~iG~G-~G~~~~~l~~~~p~~-~v~~vEidp~~~~~a~~~~~~~~~~~~~~~rv~~~~~--D~~~-~--~~~ 147 (269)
+.+..+||++|+| .|..+..+++.. ++ +|++++.+++-.+.+++ ++... -+..... +..+ . ...
T Consensus 182 ~~~g~~vlV~G~g~vG~~~~~~a~~~-G~~~Vi~~~~~~~~~~~~~~-~ga~~-------~i~~~~~~~~~~~~~~~~~~ 252 (365)
T cd08277 182 VEPGSTVAVFGLGAVGLSAIMGAKIA-GASRIIGVDINEDKFEKAKE-FGATD-------FINPKDSDKPVSEVIREMTG 252 (365)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHc-CCCeEEEEeCCHHHHHHHHH-cCCCc-------EeccccccchHHHHHHHHhC
Confidence 4568899999864 333445556654 55 79999999999998865 44211 0111100 1111 1 122
Q ss_pred CCeeEEEEcCCCCCCCCCCCCcHHHHHHHHhhccCC-cEEEEEe
Q 035593 148 DGFSGILVDLFSKGSLLSELEDPNTWEKLRQCLRKG-GRIMVNV 190 (269)
Q Consensus 148 ~~yD~I~~d~~~~~~~~~~l~~~e~~~~~~~~L~pg-G~l~~~~ 190 (269)
..+|+|+ |... ....+..+.+.|+++ |.++.-.
T Consensus 253 ~g~d~vi-d~~g---------~~~~~~~~~~~l~~~~G~~v~~g 286 (365)
T cd08277 253 GGVDYSF-ECTG---------NADLMNEALESTKLGWGVSVVVG 286 (365)
T ss_pred CCCCEEE-ECCC---------ChHHHHHHHHhcccCCCEEEEEc
Confidence 5689887 3322 135677788889885 8887643
No 415
>COG1568 Predicted methyltransferases [General function prediction only]
Probab=87.00 E-value=1.7 Score=38.27 Aligned_cols=102 Identities=15% Similarity=0.058 Sum_probs=64.2
Q ss_pred CCcEEEEcCcccHHHHHHHHHCCCceEEEEECChHHHHHHHHhcCccccccCCCCcEEEEEcccccc---ccCCCeeEEE
Q 035593 78 PGPIGILGFGAGSAARLILDLYPEAVIHGWELDPSVIKVAREFFALEKLEKSYPDRLFVYVGNALKA---SLKDGFSGIL 154 (269)
Q Consensus 78 ~~~VL~iG~G~G~~~~~l~~~~p~~~v~~vEidp~~~~~a~~~~~~~~~~~~~~~rv~~~~~D~~~~---~~~~~yD~I~ 154 (269)
++.|+.+|--.=.....++... .-+|.+||||+..+..-.+....-. -.+++.+.-|.+.- ...++||+++
T Consensus 153 gK~I~vvGDDDLtsia~aLt~m-pk~iaVvDIDERli~fi~k~aee~g-----~~~ie~~~~Dlr~plpe~~~~kFDvfi 226 (354)
T COG1568 153 GKEIFVVGDDDLTSIALALTGM-PKRIAVVDIDERLIKFIEKVAEELG-----YNNIEAFVFDLRNPLPEDLKRKFDVFI 226 (354)
T ss_pred CCeEEEEcCchhhHHHHHhcCC-CceEEEEechHHHHHHHHHHHHHhC-----ccchhheeehhcccChHHHHhhCCeee
Confidence 6789999944332222222222 4589999999999988776543111 23588888999875 3467999999
Q ss_pred EcCCCCCCCCCCCCcHHHHHHHHhhccCC---cEEEEEe
Q 035593 155 VDLFSKGSLLSELEDPNTWEKLRQCLRKG---GRIMVNV 190 (269)
Q Consensus 155 ~d~~~~~~~~~~l~~~e~~~~~~~~L~pg---G~l~~~~ 190 (269)
.|.+.. .+. ..-|+..=-+.|+.- |.+-+..
T Consensus 227 TDPpeT---i~a--lk~FlgRGI~tLkg~~~aGyfgiT~ 260 (354)
T COG1568 227 TDPPET---IKA--LKLFLGRGIATLKGEGCAGYFGITR 260 (354)
T ss_pred cCchhh---HHH--HHHHHhccHHHhcCCCccceEeeee
Confidence 875422 110 134555556777776 5665544
No 416
>KOG1209 consensus 1-Acyl dihydroxyacetone phosphate reductase and related dehydrogenases [Secondary metabolites biosynthesis, transport and catabolism]
Probab=86.91 E-value=3.8 Score=34.79 Aligned_cols=82 Identities=12% Similarity=0.168 Sum_probs=47.4
Q ss_pred CCCcEEEEcCcccHHHHHHHHHCC--CceEEEEECChH-HHHHHHHhcCccccc--cCCCCcEEEEEccccccccCCCee
Q 035593 77 PPGPIGILGFGAGSAARLILDLYP--EAVIHGWELDPS-VIKVAREFFALEKLE--KSYPDRLFVYVGNALKASLKDGFS 151 (269)
Q Consensus 77 ~~~~VL~iG~G~G~~~~~l~~~~p--~~~v~~vEidp~-~~~~a~~~~~~~~~~--~~~~~rv~~~~~D~~~~~~~~~yD 151 (269)
.++.||+.||..|.++.++++.+. ++.|.+.-..-+ |.+++.+ +++.... ..++..+.-+.+..+. ...++.|
T Consensus 6 ~~k~VlItgcs~GGIG~ala~ef~~~G~~V~AtaR~~e~M~~L~~~-~gl~~~kLDV~~~~~V~~v~~evr~-~~~Gkld 83 (289)
T KOG1209|consen 6 QPKKVLITGCSSGGIGYALAKEFARNGYLVYATARRLEPMAQLAIQ-FGLKPYKLDVSKPEEVVTVSGEVRA-NPDGKLD 83 (289)
T ss_pred CCCeEEEeecCCcchhHHHHHHHHhCCeEEEEEccccchHhhHHHh-hCCeeEEeccCChHHHHHHHHHHhh-CCCCceE
Confidence 578999999999999999888663 778887765544 4444433 3432210 0011112211122222 2567889
Q ss_pred EEEEcCCCC
Q 035593 152 GILVDLFSK 160 (269)
Q Consensus 152 ~I~~d~~~~ 160 (269)
+.+-++-.+
T Consensus 84 ~L~NNAG~~ 92 (289)
T KOG1209|consen 84 LLYNNAGQS 92 (289)
T ss_pred EEEcCCCCC
Confidence 888765433
No 417
>PRK07523 gluconate 5-dehydrogenase; Provisional
Probab=86.88 E-value=6.6 Score=33.33 Aligned_cols=75 Identities=8% Similarity=-0.094 Sum_probs=49.0
Q ss_pred CCCcEEEEcCcccHHHHHHHHHC--CCceEEEEECChHHHHHHHHhcCccccccCCCCcEEEEEcccccc----------
Q 035593 77 PPGPIGILGFGAGSAARLILDLY--PEAVIHGWELDPSVIKVAREFFALEKLEKSYPDRLFVYVGNALKA---------- 144 (269)
Q Consensus 77 ~~~~VL~iG~G~G~~~~~l~~~~--p~~~v~~vEidp~~~~~a~~~~~~~~~~~~~~~rv~~~~~D~~~~---------- 144 (269)
..++||+.|+ +|.++..+.+++ .+.+|.+++.++.-.+...+.+... ..++.++..|..+.
T Consensus 9 ~~k~vlItGa-~g~iG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~i~~~------~~~~~~~~~D~~~~~~~~~~~~~~ 81 (255)
T PRK07523 9 TGRRALVTGS-SQGIGYALAEGLAQAGAEVILNGRDPAKLAAAAESLKGQ------GLSAHALAFDVTDHDAVRAAIDAF 81 (255)
T ss_pred CCCEEEEECC-cchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhc------CceEEEEEccCCCHHHHHHHHHHH
Confidence 4678999985 556666655543 3779999999987665444433211 24578888888764
Q ss_pred -ccCCCeeEEEEcCC
Q 035593 145 -SLKDGFSGILVDLF 158 (269)
Q Consensus 145 -~~~~~yD~I~~d~~ 158 (269)
..-++.|+|+..+.
T Consensus 82 ~~~~~~~d~li~~ag 96 (255)
T PRK07523 82 EAEIGPIDILVNNAG 96 (255)
T ss_pred HHhcCCCCEEEECCC
Confidence 12356899997654
No 418
>cd08278 benzyl_alcohol_DH Benzyl alcohol dehydrogenase. Benzyl alcohol dehydrogenase is similar to liver alcohol dehydrogenase, but has some amino acid substitutions near the active site, which may determine the enzyme's specificity of oxidizing aromatic substrates. Also known as aryl-alcohol dehydrogenases, they catalyze the conversion of an aromatic alcohol + NAD+ to an aromatic aldehyde + NADH + H+. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononu
Probab=86.88 E-value=13 Score=33.73 Aligned_cols=94 Identities=20% Similarity=0.216 Sum_probs=58.5
Q ss_pred CCCCCcEEEEcCcc-cHHHHHHHHHCCCc-eEEEEECChHHHHHHHHhcCccccccCCCCcEEEEEc---cccc-c--cc
Q 035593 75 ILPPGPIGILGFGA-GSAARLILDLYPEA-VIHGWELDPSVIKVAREFFALEKLEKSYPDRLFVYVG---NALK-A--SL 146 (269)
Q Consensus 75 l~~~~~VL~iG~G~-G~~~~~l~~~~p~~-~v~~vEidp~~~~~a~~~~~~~~~~~~~~~rv~~~~~---D~~~-~--~~ 146 (269)
+.+..+||+.|+|+ |..+..+++.. +. ++++++.+++-.+.+++ ++.. .++.. +..+ . ..
T Consensus 184 ~~~g~~vlI~g~g~vG~~~~~la~~~-G~~~v~~~~~~~~k~~~~~~-~g~~----------~~i~~~~~~~~~~v~~~~ 251 (365)
T cd08278 184 PRPGSSIAVFGAGAVGLAAVMAAKIA-GCTTIIAVDIVDSRLELAKE-LGAT----------HVINPKEEDLVAAIREIT 251 (365)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHc-CCCeEEEEeCCHHHHHHHHH-cCCc----------EEecCCCcCHHHHHHHHh
Confidence 44678899997653 55555666654 55 79999999988888765 3321 11111 1111 1 12
Q ss_pred CCCeeEEEEcCCCCCCCCCCCCcHHHHHHHHhhccCCcEEEEEe
Q 035593 147 KDGFSGILVDLFSKGSLLSELEDPNTWEKLRQCLRKGGRIMVNV 190 (269)
Q Consensus 147 ~~~yD~I~~d~~~~~~~~~~l~~~e~~~~~~~~L~pgG~l~~~~ 190 (269)
...+|+|+- ... ....+..+.+.|+++|.++...
T Consensus 252 ~~~~d~vld-~~g---------~~~~~~~~~~~l~~~G~~v~~g 285 (365)
T cd08278 252 GGGVDYALD-TTG---------VPAVIEQAVDALAPRGTLALVG 285 (365)
T ss_pred CCCCcEEEE-CCC---------CcHHHHHHHHHhccCCEEEEeC
Confidence 457999873 221 1356788899999999987643
No 419
>KOG2078 consensus tRNA modification enzyme [RNA processing and modification]
Probab=86.75 E-value=0.66 Score=42.99 Aligned_cols=66 Identities=18% Similarity=0.155 Sum_probs=56.5
Q ss_pred CCCCCCcEEEEcCcccHHHHHHHHHCCCceEEEEECChHHHHHHHHhcCccccccCCCCcEEEEEcccccc
Q 035593 74 PILPPGPIGILGFGAGSAARLILDLYPEAVIHGWELDPSVIKVAREFFALEKLEKSYPDRLFVYVGNALKA 144 (269)
Q Consensus 74 ~l~~~~~VL~iG~G~G~~~~~l~~~~p~~~v~~vEidp~~~~~a~~~~~~~~~~~~~~~rv~~~~~D~~~~ 144 (269)
.+.++.-|.|+-||.|-.+.-+++ .+++|++-|++|++++..+.+.+++.. +..+++++..||..|
T Consensus 246 ~fk~gevv~D~FaGvGPfa~Pa~k--K~crV~aNDLNpesik~Lk~ni~lNkv---~~~~iei~Nmda~~F 311 (495)
T KOG2078|consen 246 LFKPGEVVCDVFAGVGPFALPAAK--KGCRVYANDLNPESIKWLKANIKLNKV---DPSAIEIFNMDAKDF 311 (495)
T ss_pred ccCCcchhhhhhcCcCccccchhh--cCcEEEecCCCHHHHHHHHHhcccccc---chhheeeecccHHHH
Confidence 466889999999999999988876 479999999999999999999877652 234599999999987
No 420
>PRK07326 short chain dehydrogenase; Provisional
Probab=86.72 E-value=9.9 Score=31.69 Aligned_cols=72 Identities=8% Similarity=-0.028 Sum_probs=46.8
Q ss_pred CCcEEEEcCcccHHHHHHHHHC--CCceEEEEECChHHHHHHHHhcCccccccCCCCcEEEEEcccccc-----------
Q 035593 78 PGPIGILGFGAGSAARLILDLY--PEAVIHGWELDPSVIKVAREFFALEKLEKSYPDRLFVYVGNALKA----------- 144 (269)
Q Consensus 78 ~~~VL~iG~G~G~~~~~l~~~~--p~~~v~~vEidp~~~~~a~~~~~~~~~~~~~~~rv~~~~~D~~~~----------- 144 (269)
.+.||++|+ +|.++..+.+++ .+.+|.++..++.-.+...+.+.. ..+++++.+|..+.
T Consensus 6 ~~~ilItGa-tg~iG~~la~~l~~~g~~V~~~~r~~~~~~~~~~~l~~-------~~~~~~~~~D~~~~~~~~~~~~~~~ 77 (237)
T PRK07326 6 GKVALITGG-SKGIGFAIAEALLAEGYKVAITARDQKELEEAAAELNN-------KGNVLGLAADVRDEADVQRAVDAIV 77 (237)
T ss_pred CCEEEEECC-CCcHHHHHHHHHHHCCCEEEEeeCCHHHHHHHHHHHhc-------cCcEEEEEccCCCHHHHHHHHHHHH
Confidence 467888885 555555555433 367999999998766554444321 14688888887754
Q ss_pred ccCCCeeEEEEcC
Q 035593 145 SLKDGFSGILVDL 157 (269)
Q Consensus 145 ~~~~~yD~I~~d~ 157 (269)
...+..|.|+..+
T Consensus 78 ~~~~~~d~vi~~a 90 (237)
T PRK07326 78 AAFGGLDVLIANA 90 (237)
T ss_pred HHcCCCCEEEECC
Confidence 0124789998764
No 421
>COG5379 BtaA S-adenosylmethionine:diacylglycerol 3-amino-3-carboxypropyl transferase [Lipid metabolism]
Probab=86.62 E-value=1.1 Score=39.61 Aligned_cols=44 Identities=20% Similarity=0.151 Sum_probs=35.5
Q ss_pred CCCCcEEEEcCcccHHHHHHHHHCCCceEEEEECChHHHHHHHHhc
Q 035593 76 LPPGPIGILGFGAGSAARLILDLYPEAVIHGWELDPSVIKVAREFF 121 (269)
Q Consensus 76 ~~~~~VL~iG~G~G~~~~~l~~~~p~~~v~~vEidp~~~~~a~~~~ 121 (269)
.+..+|..||.|+..+..++.+ ...+|++||+||.-+.+-+-++
T Consensus 62 g~ghrivtigSGGcn~L~ylsr--~Pa~id~VDlN~ahiAln~lkl 105 (414)
T COG5379 62 GIGHRIVTIGSGGCNMLAYLSR--APARIDVVDLNPAHIALNRLKL 105 (414)
T ss_pred CCCcEEEEecCCcchHHHHhhc--CCceeEEEeCCHHHHHHHHHHH
Confidence 3577899999998878888776 3569999999999988776543
No 422
>PRK06949 short chain dehydrogenase; Provisional
Probab=86.55 E-value=7.2 Score=33.01 Aligned_cols=75 Identities=8% Similarity=-0.093 Sum_probs=48.6
Q ss_pred CCCcEEEEcCcccHHHHHHHHHC--CCceEEEEECChHHHHHHHHhcCccccccCCCCcEEEEEcccccc----------
Q 035593 77 PPGPIGILGFGAGSAARLILDLY--PEAVIHGWELDPSVIKVAREFFALEKLEKSYPDRLFVYVGNALKA---------- 144 (269)
Q Consensus 77 ~~~~VL~iG~G~G~~~~~l~~~~--p~~~v~~vEidp~~~~~a~~~~~~~~~~~~~~~rv~~~~~D~~~~---------- 144 (269)
..++||+.| |+|.++..+.+.+ .+.+|+++..+++-++.....+... ..+++++..|..+.
T Consensus 8 ~~k~ilItG-asg~IG~~~a~~l~~~G~~Vi~~~r~~~~~~~~~~~l~~~------~~~~~~~~~D~~~~~~~~~~~~~~ 80 (258)
T PRK06949 8 EGKVALVTG-ASSGLGARFAQVLAQAGAKVVLASRRVERLKELRAEIEAE------GGAAHVVSLDVTDYQSIKAAVAHA 80 (258)
T ss_pred CCCEEEEEC-CCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhc------CCcEEEEEecCCCHHHHHHHHHHH
Confidence 357888888 4555555555443 3679999999988766555443211 24688888888653
Q ss_pred -ccCCCeeEEEEcCC
Q 035593 145 -SLKDGFSGILVDLF 158 (269)
Q Consensus 145 -~~~~~yD~I~~d~~ 158 (269)
...++.|+|+..+.
T Consensus 81 ~~~~~~~d~li~~ag 95 (258)
T PRK06949 81 ETEAGTIDILVNNSG 95 (258)
T ss_pred HHhcCCCCEEEECCC
Confidence 11346899987654
No 423
>PRK07576 short chain dehydrogenase; Provisional
Probab=86.43 E-value=7.1 Score=33.51 Aligned_cols=74 Identities=5% Similarity=-0.085 Sum_probs=46.6
Q ss_pred CCCcEEEEcCcccHHHHHHHHHC--CCceEEEEECChHHHHHHHHhcCccccccCCCCcEEEEEcccccc----------
Q 035593 77 PPGPIGILGFGAGSAARLILDLY--PEAVIHGWELDPSVIKVAREFFALEKLEKSYPDRLFVYVGNALKA---------- 144 (269)
Q Consensus 77 ~~~~VL~iG~G~G~~~~~l~~~~--p~~~v~~vEidp~~~~~a~~~~~~~~~~~~~~~rv~~~~~D~~~~---------- 144 (269)
+.+++|+.|+ +|.++..+.+++ .+.+|++++.+++-++...+.+... ..++.++..|..+.
T Consensus 8 ~~k~ilItGa-sggIG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~------~~~~~~~~~Dv~~~~~i~~~~~~~ 80 (264)
T PRK07576 8 AGKNVVVVGG-TSGINLGIAQAFARAGANVAVASRSQEKVDAAVAQLQQA------GPEGLGVSADVRDYAAVEAAFAQI 80 (264)
T ss_pred CCCEEEEECC-CchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHHh------CCceEEEECCCCCHHHHHHHHHHH
Confidence 4678888885 445555444433 4779999999887655444333211 23567888888753
Q ss_pred -ccCCCeeEEEEcC
Q 035593 145 -SLKDGFSGILVDL 157 (269)
Q Consensus 145 -~~~~~yD~I~~d~ 157 (269)
...++.|+++..+
T Consensus 81 ~~~~~~iD~vi~~a 94 (264)
T PRK07576 81 ADEFGPIDVLVSGA 94 (264)
T ss_pred HHHcCCCCEEEECC
Confidence 1134689998765
No 424
>PRK12475 thiamine/molybdopterin biosynthesis MoeB-like protein; Provisional
Probab=86.06 E-value=4.3 Score=36.85 Aligned_cols=34 Identities=21% Similarity=0.162 Sum_probs=22.9
Q ss_pred CCCcEEEEcCcc-cH-HHHHHHHHCCCceEEEEECCh
Q 035593 77 PPGPIGILGFGA-GS-AARLILDLYPEAVIHGWELDP 111 (269)
Q Consensus 77 ~~~~VL~iG~G~-G~-~~~~l~~~~p~~~v~~vEidp 111 (269)
..++||+||||+ |+ ++..|++ ..-.+++.||-|.
T Consensus 23 ~~~~VlIiG~GglGs~va~~La~-aGvg~i~lvD~D~ 58 (338)
T PRK12475 23 REKHVLIVGAGALGAANAEALVR-AGIGKLTIADRDY 58 (338)
T ss_pred cCCcEEEECCCHHHHHHHHHHHH-cCCCEEEEEcCCc
Confidence 367899999983 33 3444444 2334999999885
No 425
>TIGR00936 ahcY adenosylhomocysteinase. This enzyme hydrolyzes adenosylhomocysteine as part of a cycle for the regeneration of the methyl donor S-adenosylmethionine. Species that lack this enzyme are likely to have adenosylhomocysteine nucleosidase (EC 3.2.2.9), an enzyme which also acts as 5'-methyladenosine nucleosidase (see TIGR01704).
Probab=85.98 E-value=24 Score=32.90 Aligned_cols=90 Identities=14% Similarity=0.107 Sum_probs=52.8
Q ss_pred CCCCCcEEEEcCcc-cHHHHHHHHHCCCceEEEEECChHHHHHHHHhcCccccccCCCCcEEEEEccccccccCCCeeEE
Q 035593 75 ILPPGPIGILGFGA-GSAARLILDLYPEAVIHGWELDPSVIKVAREFFALEKLEKSYPDRLFVYVGNALKASLKDGFSGI 153 (269)
Q Consensus 75 l~~~~~VL~iG~G~-G~~~~~l~~~~p~~~v~~vEidp~~~~~a~~~~~~~~~~~~~~~rv~~~~~D~~~~~~~~~yD~I 153 (269)
....++|+++|+|. |......++. -+++|+++|.||.-...|+.. +. ++. +..+. -...|+|
T Consensus 192 ~l~Gk~VvViG~G~IG~~vA~~ak~-~Ga~ViV~d~dp~r~~~A~~~-G~-----------~v~--~leea--l~~aDVV 254 (406)
T TIGR00936 192 LIAGKTVVVAGYGWCGKGIAMRARG-MGARVIVTEVDPIRALEAAMD-GF-----------RVM--TMEEA--AKIGDIF 254 (406)
T ss_pred CCCcCEEEEECCCHHHHHHHHHHhh-CcCEEEEEeCChhhHHHHHhc-CC-----------EeC--CHHHH--HhcCCEE
Confidence 45688999999985 4444444443 378999999999765444432 21 111 11111 1356888
Q ss_pred EEcCCCCCCCCCCCCcHHHHHH-HHhhccCCcEEEEEecC
Q 035593 154 LVDLFSKGSLLSELEDPNTWEK-LRQCLRKGGRIMVNVGG 192 (269)
Q Consensus 154 ~~d~~~~~~~~~~l~~~e~~~~-~~~~L~pgG~l~~~~~~ 192 (269)
+.. .. +...+.. ....+|+|++++ |+..
T Consensus 255 Ita-TG---------~~~vI~~~~~~~mK~Gaili-N~G~ 283 (406)
T TIGR00936 255 ITA-TG---------NKDVIRGEHFENMKDGAIVA-NIGH 283 (406)
T ss_pred EEC-CC---------CHHHHHHHHHhcCCCCcEEE-EECC
Confidence 752 11 2455553 677888877664 5543
No 426
>cd05284 arabinose_DH_like D-arabinose dehydrogenase. This group contains arabinose dehydrogenase (AraDH) and related alcohol dehydrogenases. AraDH is a member of the medium chain dehydrogenase/reductase family and catalyzes the NAD(P)-dependent oxidation of D-arabinose and other pentoses, the initial step in the metabolism of d-arabinose into 2-oxoglutarate. Like the alcohol dehydrogenases, AraDH binds a zinc in the catalytic cleft as well as a distal structural zinc. AraDH forms homotetramers as a dimer of dimers. AraDH replaces a conserved catalytic His with replace with Arg, compared to the canonical ADH site. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol d
Probab=85.95 E-value=7 Score=34.67 Aligned_cols=100 Identities=18% Similarity=0.213 Sum_probs=56.8
Q ss_pred CCCCCcEEEEcCcc-cHHHHHHHHHCCCceEEEEECChHHHHHHHHhcCccccccCCCCcEEEEEccccccccCCCeeEE
Q 035593 75 ILPPGPIGILGFGA-GSAARLILDLYPEAVIHGWELDPSVIKVAREFFALEKLEKSYPDRLFVYVGNALKASLKDGFSGI 153 (269)
Q Consensus 75 l~~~~~VL~iG~G~-G~~~~~l~~~~p~~~v~~vEidp~~~~~a~~~~~~~~~~~~~~~rv~~~~~D~~~~~~~~~yD~I 153 (269)
+.+..+||+.|+|+ |..+..+++.....+|+++.-+++-.+.+++ ++....- +.+-. .............+|+|
T Consensus 165 ~~~~~~vlI~g~~~vg~~~~~~a~~~g~~~v~~~~~~~~~~~~~~~-~g~~~~~---~~~~~-~~~~i~~~~~~~~~dvv 239 (340)
T cd05284 165 LDPGSTVVVIGVGGLGHIAVQILRALTPATVIAVDRSEEALKLAER-LGADHVL---NASDD-VVEEVRELTGGRGADAV 239 (340)
T ss_pred CCCCCEEEEEcCcHHHHHHHHHHHHhCCCcEEEEeCCHHHHHHHHH-hCCcEEE---cCCcc-HHHHHHHHhCCCCCCEE
Confidence 45678999998542 2223334444333789999999988888755 3321100 00000 00001111233469999
Q ss_pred EEcCCCCCCCCCCCCcHHHHHHHHhhccCCcEEEEE
Q 035593 154 LVDLFSKGSLLSELEDPNTWEKLRQCLRKGGRIMVN 189 (269)
Q Consensus 154 ~~d~~~~~~~~~~l~~~e~~~~~~~~L~pgG~l~~~ 189 (269)
+-... ....++.+.++|+++|.++.-
T Consensus 240 ld~~g----------~~~~~~~~~~~l~~~g~~i~~ 265 (340)
T cd05284 240 IDFVG----------SDETLALAAKLLAKGGRYVIV 265 (340)
T ss_pred EEcCC----------CHHHHHHHHHHhhcCCEEEEE
Confidence 84211 135778888999999988754
No 427
>PRK08268 3-hydroxy-acyl-CoA dehydrogenase; Validated
Probab=85.95 E-value=1.3 Score=42.57 Aligned_cols=106 Identities=10% Similarity=0.089 Sum_probs=64.8
Q ss_pred CCCcEEEEcCc--ccHHHHHHHHHCCCceEEEEECChHHHHHHHHhcCc-----cccccC-------CCCcEEEEEcccc
Q 035593 77 PPGPIGILGFG--AGSAARLILDLYPEAVIHGWELDPSVIKVAREFFAL-----EKLEKS-------YPDRLFVYVGNAL 142 (269)
Q Consensus 77 ~~~~VL~iG~G--~G~~~~~l~~~~p~~~v~~vEidp~~~~~a~~~~~~-----~~~~~~-------~~~rv~~~~~D~~ 142 (269)
+-++|-.||+| ++.++..++. .+..|+.+|++++.++.++++... ...+.. .-.|++.. .|..
T Consensus 6 ~i~~V~VIGaG~MG~gIA~~la~--aG~~V~l~D~~~e~l~~~~~~i~~~l~~~~~~G~~~~~~~~~~~~~i~~~-~~~~ 82 (507)
T PRK08268 6 SIATVAVIGAGAMGAGIAQVAAQ--AGHTVLLYDARAGAAAAARDGIAARLAKLVEKGKLTAEQADAALARLRPV-EALA 82 (507)
T ss_pred CCCEEEEECCCHHHHHHHHHHHh--CCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEEe-CCHH
Confidence 34689999998 4455555554 488999999999999887544320 000000 00123332 2221
Q ss_pred ccccCCCeeEEEEcCCCCCCCCCCCCcHHHHHHHHhhccCCcEEEEEecCC
Q 035593 143 KASLKDGFSGILVDLFSKGSLLSELEDPNTWEKLRQCLRKGGRIMVNVGGS 193 (269)
Q Consensus 143 ~~~~~~~yD~I~~d~~~~~~~~~~l~~~e~~~~~~~~L~pgG~l~~~~~~~ 193 (269)
. -...|+||-.++.... ....+|.++.+.++++.+++.|..+.
T Consensus 83 ~---~~~aDlViEav~E~~~-----vK~~vf~~l~~~~~~~ailasntStl 125 (507)
T PRK08268 83 D---LADCDLVVEAIVERLD-----VKQALFAQLEAIVSPDCILATNTSSL 125 (507)
T ss_pred H---hCCCCEEEEcCcccHH-----HHHHHHHHHHhhCCCCcEEEECCCCC
Confidence 1 2368999875544321 13577888888888888888888654
No 428
>PRK08644 thiamine biosynthesis protein ThiF; Provisional
Probab=85.88 E-value=4.1 Score=34.34 Aligned_cols=33 Identities=24% Similarity=0.303 Sum_probs=23.0
Q ss_pred CCCcEEEEcCcc-cH-HHHHHHHHCCCceEEEEECC
Q 035593 77 PPGPIGILGFGA-GS-AARLILDLYPEAVIHGWELD 110 (269)
Q Consensus 77 ~~~~VL~iG~G~-G~-~~~~l~~~~p~~~v~~vEid 110 (269)
...+|+.+|||+ |+ ++..|.+ ..-.+++.+|.|
T Consensus 27 ~~~~V~ViG~GglGs~ia~~La~-~Gvg~i~lvD~D 61 (212)
T PRK08644 27 KKAKVGIAGAGGLGSNIAVALAR-SGVGNLKLVDFD 61 (212)
T ss_pred hCCCEEEECcCHHHHHHHHHHHH-cCCCeEEEEeCC
Confidence 467999999983 44 4444444 333489999998
No 429
>PF03435 Saccharop_dh: Saccharopine dehydrogenase ; InterPro: IPR005097 This entry represents saccharopine dehydrogenase and homospermidine synthase. Saccharopine reductase (SR) 1.5.1.10 from EC) catalyses the condensation of l-alpha-aminoadipate-delta-semialdehyde (AASA) with l-glutamate to give an imine, which is reduced by NADPH to give saccharopine []. In some organisms this enzyme is found as a bifunctional polypeptide with lysine ketoglutarate reductase (PF). Saccharopine dehydrogenase can also function as a saccharopine reductase. Homospermidine synthase proteins (2.5.1.44 from EC). Homospermidine synthase (HSS) catalyses the synthesis of the polyamine homospermidine from 2 mol putrescine in an NAD+-dependent reaction [].; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2AXQ_A 1E5Q_A 1FF9_A 1E5L_A 2PH5_A 3IC5_A 3ABI_A.
Probab=85.83 E-value=3.3 Score=38.03 Aligned_cols=104 Identities=17% Similarity=0.069 Sum_probs=55.0
Q ss_pred EEEEcCc-ccHHH-HHHHHHCCCc-eEEEEECChHHHHHHHHhcCccccccCCCCcEEEEEcccccc----ccCCCeeEE
Q 035593 81 IGILGFG-AGSAA-RLILDLYPEA-VIHGWELDPSVIKVAREFFALEKLEKSYPDRLFVYVGNALKA----SLKDGFSGI 153 (269)
Q Consensus 81 VL~iG~G-~G~~~-~~l~~~~p~~-~v~~vEidp~~~~~a~~~~~~~~~~~~~~~rv~~~~~D~~~~----~~~~~yD~I 153 (269)
|+.||+| .|..+ ..|++ .+.. +|++.+.+++-++...+.+. ..+++.+..|..+. ..-...|+|
T Consensus 1 IlvlG~G~vG~~~~~~L~~-~~~~~~v~va~r~~~~~~~~~~~~~--------~~~~~~~~~d~~~~~~l~~~~~~~dvV 71 (386)
T PF03435_consen 1 ILVLGAGRVGSAIARLLAR-RGPFEEVTVADRNPEKAERLAEKLL--------GDRVEAVQVDVNDPESLAELLRGCDVV 71 (386)
T ss_dssp EEEE--SHHHHHHHHHHHC-TTCE-EEEEEESSHHHHHHHHT--T--------TTTEEEEE--TTTHHHHHHHHTTSSEE
T ss_pred CEEEcCcHHHHHHHHHHhc-CCCCCcEEEEECCHHHHHHHHhhcc--------ccceeEEEEecCCHHHHHHHHhcCCEE
Confidence 7899984 23222 33333 3344 99999999988766655431 35799999998875 223466999
Q ss_pred EEcCCCCCCC----------CCCC---CcHHHHHHHHhhccCCcEEEEEecCC
Q 035593 154 LVDLFSKGSL----------LSEL---EDPNTWEKLRQCLRKGGRIMVNVGGS 193 (269)
Q Consensus 154 ~~d~~~~~~~----------~~~l---~~~e~~~~~~~~L~pgG~l~~~~~~~ 193 (269)
+..+...... .+.+ +..+.+..+.+..+..|+.++...+.
T Consensus 72 in~~gp~~~~~v~~~~i~~g~~yvD~~~~~~~~~~l~~~a~~~g~~~l~~~G~ 124 (386)
T PF03435_consen 72 INCAGPFFGEPVARACIEAGVHYVDTSYVTEEMLALDEEAKEAGVTALPGCGF 124 (386)
T ss_dssp EE-SSGGGHHHHHHHHHHHT-EEEESS-HHHHHHHCHHHHHHTTSEEE-S-BT
T ss_pred EECCccchhHHHHHHHHHhCCCeeccchhHHHHHHHHHHHHhhCCEEEeCccc
Confidence 9755322110 0111 11344555556666677766665544
No 430
>PF05050 Methyltransf_21: Methyltransferase FkbM domain; InterPro: IPR007744 This entry contains proteins of unknown function.; PDB: 2PY6_A.
Probab=85.76 E-value=1.6 Score=34.41 Aligned_cols=42 Identities=26% Similarity=0.387 Sum_probs=27.3
Q ss_pred EEcCccc--HHHHHHH--HHCCCceEEEEECChHHHHHHHHh--cCcc
Q 035593 83 ILGFGAG--SAARLIL--DLYPEAVIHGWELDPSVIKVAREF--FALE 124 (269)
Q Consensus 83 ~iG~G~G--~~~~~l~--~~~p~~~v~~vEidp~~~~~a~~~--~~~~ 124 (269)
|||+..| ....++. ...++.+|.++|.+|...+..++. ++++
T Consensus 1 DvGA~~G~~~~~~~~~~~~~~~~~~v~~~Ep~p~~~~~l~~~~~~~l~ 48 (167)
T PF05050_consen 1 DVGANIGFWSSTVYFLEKKCGPGGRVHAFEPNPSNFEKLKRNLNLALN 48 (167)
T ss_dssp EES-TTS--HHHHHHHHHHTS--SEEEEE---HHHHHHHHHH--HHHT
T ss_pred CcccCCChhHHHHHHHHHHcCCCCEEEEEECCHHHHHHHhHHHHHHhc
Confidence 7999999 6655553 335688999999999999988888 5443
No 431
>TIGR02279 PaaC-3OHAcCoADH 3-hydroxyacyl-CoA dehydrogenase PaaC. This 3-hydroxyacyl-CoA dehydrogenase is involved in the degradation of phenylacetic acid, presumably in steps following the opening of the phenyl ring. The sequences included in this model are all found in aparrent operons with other related genes such as paaA, paaB, paaD, paaE, paaF and paaN. Some genomes contain these other genes without an apparent paaC in the same operon - possibly in these cases a different dehydrogenase involved in fatty acid degradation may fill in the needed activity. This enzyme has domains which are members of the pfam02737 and pfam00725 families.
Probab=85.55 E-value=3 Score=40.04 Aligned_cols=107 Identities=11% Similarity=0.081 Sum_probs=64.3
Q ss_pred CCCCcEEEEcCcc--cHHHHHHHHHCCCceEEEEECChHHHHHHHHhcCc--ccc---ccC-------CCCcEEEEEccc
Q 035593 76 LPPGPIGILGFGA--GSAARLILDLYPEAVIHGWELDPSVIKVAREFFAL--EKL---EKS-------YPDRLFVYVGNA 141 (269)
Q Consensus 76 ~~~~~VL~iG~G~--G~~~~~l~~~~p~~~v~~vEidp~~~~~a~~~~~~--~~~---~~~-------~~~rv~~~~~D~ 141 (269)
.+-++|..||+|+ ..++..+++ .+..|+.+|++++.++.++++... ... +.. .-.|++.. .|.
T Consensus 3 ~~~~kV~VIGaG~MG~gIA~~la~--aG~~V~l~d~~~e~l~~~~~~i~~~l~~~~~~G~~~~~~~~~~~~~i~~~-~~~ 79 (503)
T TIGR02279 3 INVVTVAVIGAGAMGAGIAQVAAS--AGHQVLLYDIRAEALARAIAGIEARLNSLVTKGKLTAEECERTLKRLIPV-TDL 79 (503)
T ss_pred CCccEEEEECcCHHHHHHHHHHHh--CCCeEEEEeCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHhccEEe-CCH
Confidence 4567899999983 344444444 478999999999999876544310 000 000 00123322 222
Q ss_pred cccccCCCeeEEEEcCCCCCCCCCCCCcHHHHHHHHhhccCCcEEEEEecCC
Q 035593 142 LKASLKDGFSGILVDLFSKGSLLSELEDPNTWEKLRQCLRKGGRIMVNVGGS 193 (269)
Q Consensus 142 ~~~~~~~~yD~I~~d~~~~~~~~~~l~~~e~~~~~~~~L~pgG~l~~~~~~~ 193 (269)
.. -...|+||..++... -...++|..+.+.++|+-+++.|..+.
T Consensus 80 ~~---l~~aDlVIEav~E~~-----~vK~~vf~~l~~~~~~~~IlasnTStl 123 (503)
T TIGR02279 80 HA---LADAGLVIEAIVENL-----EVKKALFAQLEELCPADTIIASNTSSL 123 (503)
T ss_pred HH---hCCCCEEEEcCcCcH-----HHHHHHHHHHHhhCCCCeEEEECCCCC
Confidence 11 236899997554431 113578888888888888888787654
No 432
>PRK07688 thiamine/molybdopterin biosynthesis ThiF/MoeB-like protein; Validated
Probab=85.54 E-value=4.6 Score=36.64 Aligned_cols=34 Identities=21% Similarity=0.235 Sum_probs=23.1
Q ss_pred CCCcEEEEcCcc-cH-HHHHHHHHCCCceEEEEECCh
Q 035593 77 PPGPIGILGFGA-GS-AARLILDLYPEAVIHGWELDP 111 (269)
Q Consensus 77 ~~~~VL~iG~G~-G~-~~~~l~~~~p~~~v~~vEidp 111 (269)
...+||++|||+ |+ ++..|++ ..-.+++.||-|.
T Consensus 23 ~~~~VlVvG~GglGs~va~~La~-aGvg~i~lvD~D~ 58 (339)
T PRK07688 23 REKHVLIIGAGALGTANAEMLVR-AGVGKVTIVDRDY 58 (339)
T ss_pred cCCcEEEECCCHHHHHHHHHHHH-cCCCeEEEEeCCc
Confidence 367999999983 33 3444444 3334999999873
No 433
>cd08297 CAD3 Cinnamyl alcohol dehydrogenases (CAD). These alcohol dehydrogenases are related to the cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Cinnamyl alcohol dehydrogenases (CAD) reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short cha
Probab=85.50 E-value=13 Score=33.07 Aligned_cols=97 Identities=14% Similarity=0.207 Sum_probs=61.9
Q ss_pred CCCCCcEEEEcCc--ccHHHHHHHHHCCCceEEEEECChHHHHHHHHhcCccccccCCCCcEEEEEccccc-c---ccCC
Q 035593 75 ILPPGPIGILGFG--AGSAARLILDLYPEAVIHGWELDPSVIKVAREFFALEKLEKSYPDRLFVYVGNALK-A---SLKD 148 (269)
Q Consensus 75 l~~~~~VL~iG~G--~G~~~~~l~~~~p~~~v~~vEidp~~~~~a~~~~~~~~~~~~~~~rv~~~~~D~~~-~---~~~~ 148 (269)
+.+..+||..|+| .|..+..+++.. +.+|+++..+++-.+.+++ ++... -+.....|..+ . ...+
T Consensus 163 ~~~~~~vlV~g~~~~vg~~~~~~a~~~-g~~v~~~~~~~~~~~~~~~-~g~~~-------v~~~~~~~~~~~~~~~~~~~ 233 (341)
T cd08297 163 LKPGDWVVISGAGGGLGHLGVQYAKAM-GLRVIAIDVGDEKLELAKE-LGADA-------FVDFKKSDDVEAVKELTGGG 233 (341)
T ss_pred CCCCCEEEEECCCchHHHHHHHHHHHC-CCeEEEEeCCHHHHHHHHH-cCCcE-------EEcCCCccHHHHHHHHhcCC
Confidence 4567899999986 566666677754 6799999999988887744 44211 01111111111 1 2345
Q ss_pred CeeEEEEcCCCCCCCCCCCCcHHHHHHHHhhccCCcEEEEEe
Q 035593 149 GFSGILVDLFSKGSLLSELEDPNTWEKLRQCLRKGGRIMVNV 190 (269)
Q Consensus 149 ~yD~I~~d~~~~~~~~~~l~~~e~~~~~~~~L~pgG~l~~~~ 190 (269)
.+|+|+.+.. ..+....+.++|+++|.++.-.
T Consensus 234 ~vd~vl~~~~----------~~~~~~~~~~~l~~~g~~v~~g 265 (341)
T cd08297 234 GAHAVVVTAV----------SAAAYEQALDYLRPGGTLVCVG 265 (341)
T ss_pred CCCEEEEcCC----------chHHHHHHHHHhhcCCEEEEec
Confidence 7999985332 2356778888999999998654
No 434
>PRK06124 gluconate 5-dehydrogenase; Provisional
Probab=85.47 E-value=8.2 Score=32.71 Aligned_cols=75 Identities=5% Similarity=-0.114 Sum_probs=47.8
Q ss_pred CCCcEEEEcCcccHHHHHHHHHC--CCceEEEEECChHHHHHHHHhcCccccccCCCCcEEEEEcccccc----------
Q 035593 77 PPGPIGILGFGAGSAARLILDLY--PEAVIHGWELDPSVIKVAREFFALEKLEKSYPDRLFVYVGNALKA---------- 144 (269)
Q Consensus 77 ~~~~VL~iG~G~G~~~~~l~~~~--p~~~v~~vEidp~~~~~a~~~~~~~~~~~~~~~rv~~~~~D~~~~---------- 144 (269)
..++||+.|++ |.++..+.+.+ .+.+|+.++.+++.++...+.+... ..++.++..|..+.
T Consensus 10 ~~k~ilItGas-~~IG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~------~~~~~~~~~Dl~~~~~~~~~~~~~ 82 (256)
T PRK06124 10 AGQVALVTGSA-RGLGFEIARALAGAGAHVLVNGRNAATLEAAVAALRAA------GGAAEALAFDIADEEAVAAAFARI 82 (256)
T ss_pred CCCEEEEECCC-chHHHHHHHHHHHcCCeEEEEeCCHHHHHHHHHHHHhc------CCceEEEEccCCCHHHHHHHHHHH
Confidence 46788888864 55555554433 3789999999987655444433211 24688888887753
Q ss_pred -ccCCCeeEEEEcCC
Q 035593 145 -SLKDGFSGILVDLF 158 (269)
Q Consensus 145 -~~~~~yD~I~~d~~ 158 (269)
..-++.|.|+..+.
T Consensus 83 ~~~~~~id~vi~~ag 97 (256)
T PRK06124 83 DAEHGRLDILVNNVG 97 (256)
T ss_pred HHhcCCCCEEEECCC
Confidence 11246799987653
No 435
>PF02719 Polysacc_synt_2: Polysaccharide biosynthesis protein; InterPro: IPR003869 This domain is found in diverse bacterial polysaccharide biosynthesis proteins including the CapD protein from Staphylococcus aureus [], the WalL protein, mannosyl-transferase [], and several putative epimerases. The CapD protein is required for biosynthesis of type 1 capsular polysaccharide.; GO: 0009058 biosynthetic process; PDB: 3PVZ_C 2GN8_B 2GN4_A 2GNA_B 2GN6_A 2GN9_A.
Probab=85.26 E-value=3 Score=37.03 Aligned_cols=72 Identities=7% Similarity=-0.016 Sum_probs=43.3
Q ss_pred EEEEcCcccHHHHHHHHHC---CCceEEEEECChHHHHHHHHhcCccccccCCCCcEE----EEEcccccc------ccC
Q 035593 81 IGILGFGAGSAARLILDLY---PEAVIHGWELDPSVIKVAREFFALEKLEKSYPDRLF----VYVGNALKA------SLK 147 (269)
Q Consensus 81 VL~iG~G~G~~~~~l~~~~---p~~~v~~vEidp~~~~~a~~~~~~~~~~~~~~~rv~----~~~~D~~~~------~~~ 147 (269)
||+-| |+|+++..|.++. ...++..+|.|+.-+-..++.+.-.. .+++++ .+.+|.++. ...
T Consensus 1 VLVTG-a~GSIGseL~rql~~~~p~~lil~d~~E~~l~~l~~~l~~~~----~~~~v~~~~~~vigDvrd~~~l~~~~~~ 75 (293)
T PF02719_consen 1 VLVTG-AGGSIGSELVRQLLRYGPKKLILFDRDENKLYELERELRSRF----PDPKVRFEIVPVIGDVRDKERLNRIFEE 75 (293)
T ss_dssp EEEET-TTSHHHHHHHHHHHCCB-SEEEEEES-HHHHHHHHHHCHHHC------TTCEEEEE--CTSCCHHHHHHHHTT-
T ss_pred CEEEc-cccHHHHHHHHHHHhcCCCeEEEeCCChhHHHHHHHHHhhcc----cccCcccccCceeecccCHHHHHHHHhh
Confidence 45555 6788888877753 23589999999998877777762110 123454 458999875 245
Q ss_pred CCeeEEEEcC
Q 035593 148 DGFSGILVDL 157 (269)
Q Consensus 148 ~~yD~I~~d~ 157 (269)
.+.|+||.-+
T Consensus 76 ~~pdiVfHaA 85 (293)
T PF02719_consen 76 YKPDIVFHAA 85 (293)
T ss_dssp -T-SEEEE--
T ss_pred cCCCEEEECh
Confidence 5899999754
No 436
>cd08236 sugar_DH NAD(P)-dependent sugar dehydrogenases. This group contains proteins identified as sorbitol dehydrogenases and other sugar dehydrogenases of the medium-chain dehydrogenase/reductase family (MDR), which includes zinc-dependent alcohol dehydrogenase and related proteins. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Related proteins include threonine dehydrogenase, formaldehyde dehydrogenase, and butanediol dehydrogenase. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast
Probab=85.21 E-value=6.9 Score=34.83 Aligned_cols=99 Identities=20% Similarity=0.218 Sum_probs=58.2
Q ss_pred CCCCCcEEEEcCcc-cHHHHHHHHHCCCce-EEEEECChHHHHHHHHhcCccccccCCCCcEEEEEccccccccCCCeeE
Q 035593 75 ILPPGPIGILGFGA-GSAARLILDLYPEAV-IHGWELDPSVIKVAREFFALEKLEKSYPDRLFVYVGNALKASLKDGFSG 152 (269)
Q Consensus 75 l~~~~~VL~iG~G~-G~~~~~l~~~~p~~~-v~~vEidp~~~~~a~~~~~~~~~~~~~~~rv~~~~~D~~~~~~~~~yD~ 152 (269)
+.+..+||+.|+|+ |..+..+++. .+.+ ++++.-+++..+.+++ ++....- +.+-.- ............+|+
T Consensus 157 ~~~~~~vlI~g~g~~g~~~~~lA~~-~G~~~v~~~~~~~~~~~~l~~-~g~~~~~---~~~~~~-~~~~~~~~~~~~~d~ 230 (343)
T cd08236 157 ITLGDTVVVIGAGTIGLLAIQWLKI-LGAKRVIAVDIDDEKLAVARE-LGADDTI---NPKEED-VEKVRELTEGRGADL 230 (343)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHH-cCCCEEEEEcCCHHHHHHHHH-cCCCEEe---cCcccc-HHHHHHHhCCCCCCE
Confidence 44678999998654 5555566664 3665 9999988888887754 3321100 000000 011111133345999
Q ss_pred EEEcCCCCCCCCCCCCcHHHHHHHHhhccCCcEEEEE
Q 035593 153 ILVDLFSKGSLLSELEDPNTWEKLRQCLRKGGRIMVN 189 (269)
Q Consensus 153 I~~d~~~~~~~~~~l~~~e~~~~~~~~L~pgG~l~~~ 189 (269)
|+-... ....+..+.++|+++|.++.-
T Consensus 231 vld~~g----------~~~~~~~~~~~l~~~G~~v~~ 257 (343)
T cd08236 231 VIEAAG----------SPATIEQALALARPGGKVVLV 257 (343)
T ss_pred EEECCC----------CHHHHHHHHHHhhcCCEEEEE
Confidence 984211 245778889999999998764
No 437
>PF14314 Methyltrans_Mon: Virus-capping methyltransferase
Probab=85.11 E-value=4.2 Score=40.14 Aligned_cols=153 Identities=11% Similarity=0.013 Sum_probs=82.9
Q ss_pred CCCcEEEEcCcccHHHHHHHHHCCCceEE---EEECChHHHHHHHHhcCcccc--ccCCCCcEEEEEcc--------ccc
Q 035593 77 PPGPIGILGFGAGSAARLILDLYPEAVIH---GWELDPSVIKVAREFFALEKL--EKSYPDRLFVYVGN--------ALK 143 (269)
Q Consensus 77 ~~~~VL~iG~G~G~~~~~l~~~~p~~~v~---~vEidp~~~~~a~~~~~~~~~--~~~~~~rv~~~~~D--------~~~ 143 (269)
++...|..|=|+|+++..+++.+|..++. -+|++..++.-+... ++. ....+.+-+++..| ..+
T Consensus 322 ~~~d~l~~GDGSGGita~lLR~~p~sr~iFNSLL~~~~~~l~Gs~P~---PPsAi~~~g~~~~Rcvn~~~~W~~pSDLs~ 398 (675)
T PF14314_consen 322 KYRDALCGGDGSGGITACLLRMNPTSRGIFNSLLELDGSDLRGSHPS---PPSAIMALGNDKSRCVNLDTCWEHPSDLSD 398 (675)
T ss_pred CcceeEEEecCchHHHHHHHHhCcccceeeeccccccCCCCCCCCCC---CcHHHhccCcccceeecchhhhcCccccCC
Confidence 35788999999999999999999976554 344444332221110 000 00011233333322 211
Q ss_pred ---c--------ccCCCeeEEEEcCCCCCCCCCCCCcHHHHHHHHhhccCCcEEEEEecCCCccccccccchhHHHHHHH
Q 035593 144 ---A--------SLKDGFSGILVDLFSKGSLLSELEDPNTWEKLRQCLRKGGRIMVNVGGSCVEAEDSRRDGKVVMEATL 212 (269)
Q Consensus 144 ---~--------~~~~~yD~I~~d~~~~~~~~~~l~~~e~~~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 212 (269)
| ..+-++|+|++|+--.+.........-.-+.+...|.++|.+++-.+.... -..-..++
T Consensus 399 ~~TW~YF~~l~~~~~~~idLiv~DmEV~d~~~~~kIe~~l~~~~~~ll~~~gtLIfKTYlt~l---------~~~~~~il 469 (675)
T PF14314_consen 399 PETWKYFVSLKKQHNLSIDLIVMDMEVRDDSIIRKIEDNLRDYVHSLLEEPGTLIFKTYLTRL---------LSPDYNIL 469 (675)
T ss_pred ccHHHHHHHHHhhcCCcccEEEEeceecChHHHHHHHHHHHHHHHHhcCCCcEEEEehhHhhh---------hcchhhHH
Confidence 1 135589999999753321110101122333444677999999997765432 01123578
Q ss_pred HHHHHHhcCceEEEEcCCC---CceEEEEecCC
Q 035593 213 KAMHKVFGKKLYVLSLGNR---KDDSLIALTGE 242 (269)
Q Consensus 213 ~~l~~~F~~~v~~~~~~~~---~n~v~~~~~~~ 242 (269)
..+.+.|. .|..+...-. .-+|.+.+.+.
T Consensus 470 ~~lg~~F~-~V~l~qT~~SSs~TSEVYlv~~~~ 501 (675)
T PF14314_consen 470 DLLGRYFK-SVELVQTQFSSSFTSEVYLVFQKL 501 (675)
T ss_pred HHHHhhcC-ceEEEECCCCCCCceEEEEEEecc
Confidence 88999996 6777754322 12455555444
No 438
>PF10237 N6-adenineMlase: Probable N6-adenine methyltransferase; InterPro: IPR019369 This family of proteins, which are of approximately 200 residues in length, contain a highly conserved Glu-Phe-Trp (QFW) motif close to the N terminus and an Asp/Asn-Pro-Pro-Tyr/Phe motif in the centre. This latter motif is characteristic of N-6 adenine-specific DNA methylases and could be involved in substrate binding or in the catalytic activity (, ).
Probab=85.08 E-value=11 Score=30.54 Aligned_cols=89 Identities=17% Similarity=0.125 Sum_probs=54.2
Q ss_pred CCCcEEEEcCcccHHHHHHHH-HCCCceEEEEECChHHHHHHHHhcCccccccCCCCcEEEEEcccccc-----ccCCCe
Q 035593 77 PPGPIGILGFGAGSAARLILD-LYPEAVIHGWELDPSVIKVAREFFALEKLEKSYPDRLFVYVGNALKA-----SLKDGF 150 (269)
Q Consensus 77 ~~~~VL~iG~G~G~~~~~l~~-~~p~~~v~~vEidp~~~~~a~~~~~~~~~~~~~~~rv~~~~~D~~~~-----~~~~~y 150 (269)
+..+|+.|||=+-.. .+.+ ..++.++...|+|........ . +++.-|...- ...++|
T Consensus 25 ~~~~iaclstPsl~~--~l~~~~~~~~~~~Lle~D~RF~~~~~--------------~-~F~fyD~~~p~~~~~~l~~~~ 87 (162)
T PF10237_consen 25 DDTRIACLSTPSLYE--ALKKESKPRIQSFLLEYDRRFEQFGG--------------D-EFVFYDYNEPEELPEELKGKF 87 (162)
T ss_pred CCCEEEEEeCcHHHH--HHHhhcCCCccEEEEeecchHHhcCC--------------c-ceEECCCCChhhhhhhcCCCc
Confidence 467899998765444 3433 346789999999986544321 1 3333343332 225799
Q ss_pred eEEEEcCCCCCCCCCCCCcHHHH----HHHHhhccCCcEEEEEe
Q 035593 151 SGILVDLFSKGSLLSELEDPNTW----EKLRQCLRKGGRIMVNV 190 (269)
Q Consensus 151 D~I~~d~~~~~~~~~~l~~~e~~----~~~~~~L~pgG~l~~~~ 190 (269)
|+|++|.+- .+++.+ +.++..+++++.+++-.
T Consensus 88 d~vv~DPPF--------l~~ec~~k~a~ti~~L~k~~~kii~~T 123 (162)
T PF10237_consen 88 DVVVIDPPF--------LSEECLTKTAETIRLLLKPGGKIILCT 123 (162)
T ss_pred eEEEECCCC--------CCHHHHHHHHHHHHHHhCccceEEEec
Confidence 999998542 245554 55556667777666543
No 439
>PRK00094 gpsA NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Validated
Probab=85.02 E-value=3.5 Score=36.60 Aligned_cols=96 Identities=19% Similarity=0.171 Sum_probs=54.6
Q ss_pred cEEEEcCc--ccHHHHHHHHHCCCceEEEEECChHHHHHHHHhcCccccc-c-CCCCcEEEEEccccccccCCCeeEEEE
Q 035593 80 PIGILGFG--AGSAARLILDLYPEAVIHGWELDPSVIKVAREFFALEKLE-K-SYPDRLFVYVGNALKASLKDGFSGILV 155 (269)
Q Consensus 80 ~VL~iG~G--~G~~~~~l~~~~p~~~v~~vEidp~~~~~a~~~~~~~~~~-~-~~~~rv~~~~~D~~~~~~~~~yD~I~~ 155 (269)
+|..||+| ++.++..|++ .+.+|++++.+++.++..++........ . ....+++.. .|.. ...+..|+|++
T Consensus 3 kI~iiG~G~mG~~~a~~L~~--~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~--~~~~~~D~vi~ 77 (325)
T PRK00094 3 KIAVLGAGSWGTALAIVLAR--NGHDVTLWARDPEQAAEINADRENPRYLPGIKLPDNLRAT-TDLA--EALADADLILV 77 (325)
T ss_pred EEEEECCCHHHHHHHHHHHh--CCCEEEEEECCHHHHHHHHHcCcccccCCCCcCCCCeEEe-CCHH--HHHhCCCEEEE
Confidence 68999987 4445555554 3668999999998887766542110000 0 000112211 1211 12246799998
Q ss_pred cCCCCCCCCCCCCcHHHHHHHHhhccCCcEEE
Q 035593 156 DLFSKGSLLSELEDPNTWEKLRQCLRKGGRIM 187 (269)
Q Consensus 156 d~~~~~~~~~~l~~~e~~~~~~~~L~pgG~l~ 187 (269)
...+. ...+.++.+...++++.+++
T Consensus 78 ~v~~~-------~~~~v~~~l~~~~~~~~~vi 102 (325)
T PRK00094 78 AVPSQ-------ALREVLKQLKPLLPPDAPIV 102 (325)
T ss_pred eCCHH-------HHHHHHHHHHhhcCCCCEEE
Confidence 65432 24677888888888765544
No 440
>cd05288 PGDH Prostaglandin dehydrogenases. Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino
Probab=84.69 E-value=20 Score=31.42 Aligned_cols=96 Identities=18% Similarity=0.154 Sum_probs=60.2
Q ss_pred CCCCCcEEEEcC--cccHHHHHHHHHCCCceEEEEECChHHHHHHHHhcCccccccCCCCcEEEEEccccc-c--ccCCC
Q 035593 75 ILPPGPIGILGF--GAGSAARLILDLYPEAVIHGWELDPSVIKVAREFFALEKLEKSYPDRLFVYVGNALK-A--SLKDG 149 (269)
Q Consensus 75 l~~~~~VL~iG~--G~G~~~~~l~~~~p~~~v~~vEidp~~~~~a~~~~~~~~~~~~~~~rv~~~~~D~~~-~--~~~~~ 149 (269)
+.+..+||..|+ +.|..+..+++. .+.+|+++..+++-.+.+++.++... -+.....+... . ...+.
T Consensus 143 ~~~~~~vlI~g~~g~ig~~~~~~a~~-~G~~vi~~~~~~~~~~~~~~~~g~~~-------~~~~~~~~~~~~v~~~~~~~ 214 (329)
T cd05288 143 PKPGETVVVSAAAGAVGSVVGQIAKL-LGARVVGIAGSDEKCRWLVEELGFDA-------AINYKTPDLAEALKEAAPDG 214 (329)
T ss_pred CCCCCEEEEecCcchHHHHHHHHHHH-cCCEEEEEeCCHHHHHHHHhhcCCce-------EEecCChhHHHHHHHhccCC
Confidence 445789999984 356666666665 47899999999988888877555311 01111111111 1 11357
Q ss_pred eeEEEEcCCCCCCCCCCCCcHHHHHHHHhhccCCcEEEEE
Q 035593 150 FSGILVDLFSKGSLLSELEDPNTWEKLRQCLRKGGRIMVN 189 (269)
Q Consensus 150 yD~I~~d~~~~~~~~~~l~~~e~~~~~~~~L~pgG~l~~~ 189 (269)
+|+++ |... ...++.+.++|+++|.++..
T Consensus 215 ~d~vi-~~~g----------~~~~~~~~~~l~~~G~~v~~ 243 (329)
T cd05288 215 IDVYF-DNVG----------GEILDAALTLLNKGGRIALC 243 (329)
T ss_pred ceEEE-Ecch----------HHHHHHHHHhcCCCceEEEE
Confidence 99887 4321 24677888899999987753
No 441
>KOG2793 consensus Putative N2,N2-dimethylguanosine tRNA methyltransferase [RNA processing and modification]
Probab=84.59 E-value=7.8 Score=33.58 Aligned_cols=103 Identities=20% Similarity=0.025 Sum_probs=52.4
Q ss_pred CCCcEEEEcCcccHHHHHHHHHCCCceEEEEECChHHHHHHHHhcCccccccCC--CCcEEEEEcc---cccc-ccCCC-
Q 035593 77 PPGPIGILGFGAGSAARLILDLYPEAVIHGWELDPSVIKVAREFFALEKLEKSY--PDRLFVYVGN---ALKA-SLKDG- 149 (269)
Q Consensus 77 ~~~~VL~iG~G~G~~~~~l~~~~p~~~v~~vEidp~~~~~a~~~~~~~~~~~~~--~~rv~~~~~D---~~~~-~~~~~- 149 (269)
.+.+||++|.|+|..+..++. ....++..=|+-..+..+. .....+. ...+ ...+.+..-+ +-.. ...+.
T Consensus 86 ~~~~vlELGsGtglvG~~aa~-~~~~~v~ltD~~~~~~~L~-~~~~~~~-~~l~~~g~~v~v~~L~Wg~~~~~~~~~~~~ 162 (248)
T KOG2793|consen 86 KYINVLELGSGTGLVGILAAL-LLGAEVVLTDLPKVVENLK-FNRDKNN-IALNQLGGSVIVAILVWGNALDVSFRLPNP 162 (248)
T ss_pred cceeEEEecCCccHHHHHHHH-HhcceeccCCchhhHHHHH-Hhhhhhh-hhhhhcCCceeEEEEecCCcccHhhccCCc
Confidence 366899999999966666655 3567777777754443332 2211000 0000 1123333222 2222 22233
Q ss_pred eeEEEE-cCCCCCCCCCCCCcHHHHHHHHhhccCCcEEE
Q 035593 150 FSGILV-DLFSKGSLLSELEDPNTWEKLRQCLRKGGRIM 187 (269)
Q Consensus 150 yD~I~~-d~~~~~~~~~~l~~~e~~~~~~~~L~pgG~l~ 187 (269)
+|+|+. |.+- .++. -.....-++..|..+|++.
T Consensus 163 ~DlilasDvvy----~~~~-~e~Lv~tla~ll~~~~~i~ 196 (248)
T KOG2793|consen 163 FDLILASDVVY----EEES-FEGLVKTLAFLLAKDGTIF 196 (248)
T ss_pred ccEEEEeeeee----cCCc-chhHHHHHHHHHhcCCeEE
Confidence 899984 3221 1111 2356667777788888333
No 442
>PRK08267 short chain dehydrogenase; Provisional
Probab=84.40 E-value=13 Score=31.60 Aligned_cols=71 Identities=7% Similarity=0.042 Sum_probs=47.0
Q ss_pred CcEEEEcCcccHHHHHHHHHC--CCceEEEEECChHHHHHHHHhcCccccccCCCCcEEEEEcccccc-------c---c
Q 035593 79 GPIGILGFGAGSAARLILDLY--PEAVIHGWELDPSVIKVAREFFALEKLEKSYPDRLFVYVGNALKA-------S---L 146 (269)
Q Consensus 79 ~~VL~iG~G~G~~~~~l~~~~--p~~~v~~vEidp~~~~~a~~~~~~~~~~~~~~~rv~~~~~D~~~~-------~---~ 146 (269)
+++|+.|+++ .++..+.+++ .+.+|.+++.+++-++...+... ..+++++..|..+. . .
T Consensus 2 k~vlItGasg-~iG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~--------~~~~~~~~~D~~~~~~v~~~~~~~~~ 72 (260)
T PRK08267 2 KSIFITGAAS-GIGRATALLFAAEGWRVGAYDINEAGLAALAAELG--------AGNAWTGALDVTDRAAWDAALADFAA 72 (260)
T ss_pred cEEEEeCCCc-hHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHhc--------CCceEEEEecCCCHHHHHHHHHHHHH
Confidence 4688888654 4444444432 36799999999887666554432 24688999998864 0 1
Q ss_pred --CCCeeEEEEcCC
Q 035593 147 --KDGFSGILVDLF 158 (269)
Q Consensus 147 --~~~yD~I~~d~~ 158 (269)
.++.|+|+..+.
T Consensus 73 ~~~~~id~vi~~ag 86 (260)
T PRK08267 73 ATGGRLDVLFNNAG 86 (260)
T ss_pred HcCCCCCEEEECCC
Confidence 457899997653
No 443
>PLN02178 cinnamyl-alcohol dehydrogenase
Probab=84.40 E-value=9 Score=35.07 Aligned_cols=93 Identities=15% Similarity=0.174 Sum_probs=53.9
Q ss_pred CCCCcEEEEcCc-ccHHHHHHHHHCCCceEEEEECChHH-HHHHHHhcCccccccCCCCcEEEEEcccccc-ccCCCeeE
Q 035593 76 LPPGPIGILGFG-AGSAARLILDLYPEAVIHGWELDPSV-IKVAREFFALEKLEKSYPDRLFVYVGNALKA-SLKDGFSG 152 (269)
Q Consensus 76 ~~~~~VL~iG~G-~G~~~~~l~~~~p~~~v~~vEidp~~-~~~a~~~~~~~~~~~~~~~rv~~~~~D~~~~-~~~~~yD~ 152 (269)
.+..+||..|+| -|.++..+++.. +++|++++.+++- .+.+++ ++... .+...+.... .....+|+
T Consensus 177 ~~g~~VlV~G~G~vG~~avq~Ak~~-Ga~Vi~~~~~~~~~~~~a~~-lGa~~---------~i~~~~~~~v~~~~~~~D~ 245 (375)
T PLN02178 177 ESGKRLGVNGLGGLGHIAVKIGKAF-GLRVTVISRSSEKEREAIDR-LGADS---------FLVTTDSQKMKEAVGTMDF 245 (375)
T ss_pred CCCCEEEEEcccHHHHHHHHHHHHc-CCeEEEEeCChHHhHHHHHh-CCCcE---------EEcCcCHHHHHHhhCCCcE
Confidence 356788888875 344555566654 6789999987654 455543 44211 1101111112 11135898
Q ss_pred EEEcCCCCCCCCCCCCcHHHHHHHHhhccCCcEEEEE
Q 035593 153 ILVDLFSKGSLLSELEDPNTWEKLRQCLRKGGRIMVN 189 (269)
Q Consensus 153 I~~d~~~~~~~~~~l~~~e~~~~~~~~L~pgG~l~~~ 189 (269)
|+ |+.. ....+..+.+.|+++|.++.-
T Consensus 246 vi-d~~G---------~~~~~~~~~~~l~~~G~iv~v 272 (375)
T PLN02178 246 II-DTVS---------AEHALLPLFSLLKVSGKLVAL 272 (375)
T ss_pred EE-ECCC---------cHHHHHHHHHhhcCCCEEEEE
Confidence 87 3321 234677888899999998764
No 444
>cd01483 E1_enzyme_family Superfamily of activating enzymes (E1) of the ubiquitin-like proteins. This family includes classical ubiquitin-activating enzymes E1, ubiquitin-like (ubl) activating enzymes and other mechanistic homologes, like MoeB, Thif1 and others. The common reaction mechanism catalyzed by MoeB, ThiF and the E1 enzymes begins with a nucleophilic attack of the C-terminal carboxylate of MoaD, ThiS and ubiquitin, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS.
Probab=84.38 E-value=10 Score=29.33 Aligned_cols=30 Identities=23% Similarity=0.259 Sum_probs=19.6
Q ss_pred cEEEEcCc-ccH-HHHHHHHHCCCceEEEEECC
Q 035593 80 PIGILGFG-AGS-AARLILDLYPEAVIHGWELD 110 (269)
Q Consensus 80 ~VL~iG~G-~G~-~~~~l~~~~p~~~v~~vEid 110 (269)
+||.+||| .|+ ++..|.+ ..-.+++.+|-|
T Consensus 1 ~VliiG~GglGs~ia~~L~~-~Gv~~i~ivD~d 32 (143)
T cd01483 1 RVLLVGLGGLGSEIALNLAR-SGVGKITLIDFD 32 (143)
T ss_pred CEEEECCCHHHHHHHHHHHH-CCCCEEEEEcCC
Confidence 58999997 333 3344444 233489999977
No 445
>cd05281 TDH Threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine via NAD(H)- dependent oxidation. THD is a member of the zinc-requiring, medium chain NAD(H)-dependent alcohol dehydrogenase family (MDR). MDRs have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria) and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose.
Probab=84.32 E-value=7 Score=34.87 Aligned_cols=95 Identities=17% Similarity=0.203 Sum_probs=56.1
Q ss_pred CCCCcEEEEcCcc-cHHHHHHHHHCCCc-eEEEEECChHHHHHHHHhcCccccccCCCCcEEEEEccc---cccccCCCe
Q 035593 76 LPPGPIGILGFGA-GSAARLILDLYPEA-VIHGWELDPSVIKVAREFFALEKLEKSYPDRLFVYVGNA---LKASLKDGF 150 (269)
Q Consensus 76 ~~~~~VL~iG~G~-G~~~~~l~~~~p~~-~v~~vEidp~~~~~a~~~~~~~~~~~~~~~rv~~~~~D~---~~~~~~~~y 150 (269)
.++.+||+.|+|+ |..+..+++.. +. +|.+++-+++-.+.+++ ++... -+.....+. .+....+.+
T Consensus 162 ~~g~~vlV~g~g~vg~~~~~la~~~-G~~~v~~~~~~~~~~~~~~~-~g~~~-------~~~~~~~~~~~~~~~~~~~~v 232 (341)
T cd05281 162 VSGKSVLITGCGPIGLMAIAVAKAA-GASLVIASDPNPYRLELAKK-MGADV-------VINPREEDVVEVKSVTDGTGV 232 (341)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHc-CCcEEEEECCCHHHHHHHHH-hCcce-------eeCcccccHHHHHHHcCCCCC
Confidence 4677888877543 44555566654 55 78888777777777665 33211 011111111 112334578
Q ss_pred eEEEEcCCCCCCCCCCCCcHHHHHHHHhhccCCcEEEEE
Q 035593 151 SGILVDLFSKGSLLSELEDPNTWEKLRQCLRKGGRIMVN 189 (269)
Q Consensus 151 D~I~~d~~~~~~~~~~l~~~e~~~~~~~~L~pgG~l~~~ 189 (269)
|+|+-... .......+.+.|+++|.++..
T Consensus 233 d~vld~~g----------~~~~~~~~~~~l~~~G~~v~~ 261 (341)
T cd05281 233 DVVLEMSG----------NPKAIEQGLKALTPGGRVSIL 261 (341)
T ss_pred CEEEECCC----------CHHHHHHHHHHhccCCEEEEE
Confidence 99984321 245677888999999998753
No 446
>TIGR01470 cysG_Nterm siroheme synthase, N-terminal domain. This model represents a subfamily of CysG N-terminal region-related sequences. All sequences in the seed alignment for this model are N-terminal regions of known or predicted siroheme synthases. The C-terminal region of each is uroporphyrin-III C-methyltransferase (EC 2.1.1.107), which catalyzes the first step committed to the biosynthesis of either siroheme or cobalamin (vitamin B12) rather than protoheme (heme). The region represented by this model completes the process of oxidation and iron insertion to yield siroheme. Siroheme is a cofactor for nitrite and sulfite reductases, so siroheme synthase is CysG of cysteine biosynthesis in some organisms.
Probab=84.19 E-value=9 Score=32.08 Aligned_cols=90 Identities=13% Similarity=0.086 Sum_probs=51.6
Q ss_pred CCCcEEEEcCcccHHH--HHHHHHCCCceEEEEECC--hHHHHHHHHhcCccccccCCCCcEEEEEccccccccCCCeeE
Q 035593 77 PPGPIGILGFGAGSAA--RLILDLYPEAVIHGWELD--PSVIKVAREFFALEKLEKSYPDRLFVYVGNALKASLKDGFSG 152 (269)
Q Consensus 77 ~~~~VL~iG~G~G~~~--~~l~~~~p~~~v~~vEid--p~~~~~a~~~~~~~~~~~~~~~rv~~~~~D~~~~~~~~~yD~ 152 (269)
..++||+||+|.=... +.|++ -+++|++|+.+ ++..+++. ..+++++.++...- .-..+|+
T Consensus 8 ~gk~vlVvGgG~va~rk~~~Ll~--~ga~VtVvsp~~~~~l~~l~~------------~~~i~~~~~~~~~~-dl~~~~l 72 (205)
T TIGR01470 8 EGRAVLVVGGGDVALRKARLLLK--AGAQLRVIAEELESELTLLAE------------QGGITWLARCFDAD-ILEGAFL 72 (205)
T ss_pred CCCeEEEECcCHHHHHHHHHHHH--CCCEEEEEcCCCCHHHHHHHH------------cCCEEEEeCCCCHH-HhCCcEE
Confidence 4679999998853333 34444 46788888654 34444332 13678777764422 2246899
Q ss_pred EEEcCCCCCCCCCCCCcHHHHHHHHhhccCCcEEEEEecC
Q 035593 153 ILVDLFSKGSLLSELEDPNTWEKLRQCLRKGGRIMVNVGG 192 (269)
Q Consensus 153 I~~d~~~~~~~~~~l~~~e~~~~~~~~L~pgG~l~~~~~~ 192 (269)
|+....+ .+.-..+....+..|+++ |+.+
T Consensus 73 Vi~at~d----------~~ln~~i~~~a~~~~ilv-n~~d 101 (205)
T TIGR01470 73 VIAATDD----------EELNRRVAHAARARGVPV-NVVD 101 (205)
T ss_pred EEECCCC----------HHHHHHHHHHHHHcCCEE-EECC
Confidence 8864322 233444555555567665 5544
No 447
>PRK08213 gluconate 5-dehydrogenase; Provisional
Probab=84.19 E-value=11 Score=32.05 Aligned_cols=75 Identities=5% Similarity=-0.131 Sum_probs=49.8
Q ss_pred CCCcEEEEcCcccHHHHHHHHHC--CCceEEEEECChHHHHHHHHhcCccccccCCCCcEEEEEcccccc----------
Q 035593 77 PPGPIGILGFGAGSAARLILDLY--PEAVIHGWELDPSVIKVAREFFALEKLEKSYPDRLFVYVGNALKA---------- 144 (269)
Q Consensus 77 ~~~~VL~iG~G~G~~~~~l~~~~--p~~~v~~vEidp~~~~~a~~~~~~~~~~~~~~~rv~~~~~D~~~~---------- 144 (269)
+.+++|+.|+ +|.++..+.+++ .+.+|+.++.++.-.+...+.+... ..++.++.+|..+.
T Consensus 11 ~~k~ilItGa-~g~IG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~i~~~------~~~~~~~~~Dl~d~~~i~~~~~~~ 83 (259)
T PRK08213 11 SGKTALVTGG-SRGLGLQIAEALGEAGARVVLSARKAEELEEAAAHLEAL------GIDALWIAADVADEADIERLAEET 83 (259)
T ss_pred CCCEEEEECC-CchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhc------CCeEEEEEccCCCHHHHHHHHHHH
Confidence 4578888884 566666665543 3679999999887766555443211 24678889998864
Q ss_pred -ccCCCeeEEEEcCC
Q 035593 145 -SLKDGFSGILVDLF 158 (269)
Q Consensus 145 -~~~~~yD~I~~d~~ 158 (269)
...+..|.|+..+.
T Consensus 84 ~~~~~~id~vi~~ag 98 (259)
T PRK08213 84 LERFGHVDILVNNAG 98 (259)
T ss_pred HHHhCCCCEEEECCC
Confidence 11246899997653
No 448
>COG1062 AdhC Zn-dependent alcohol dehydrogenases, class III [Energy production and conversion]
Probab=84.10 E-value=12 Score=33.89 Aligned_cols=100 Identities=15% Similarity=0.196 Sum_probs=62.8
Q ss_pred CCCCCcEEEEcCcc-cHHHHHHHHHCCCceEEEEECChHHHHHHHHhcCccccccCCCCcEEEEEc-ccccc---ccCCC
Q 035593 75 ILPPGPIGILGFGA-GSAARLILDLYPEAVIHGWELDPSVIKVAREFFALEKLEKSYPDRLFVYVG-NALKA---SLKDG 149 (269)
Q Consensus 75 l~~~~~VL~iG~G~-G~~~~~l~~~~p~~~v~~vEidp~~~~~a~~~~~~~~~~~~~~~rv~~~~~-D~~~~---~~~~~ 149 (269)
+.+..+|..+|||+ |..+..-++.....+|.+||++++-.++|+++-...- +.-... |..+. ..+..
T Consensus 183 v~~G~tvaV~GlGgVGlaaI~gA~~agA~~IiAvD~~~~Kl~~A~~fGAT~~--------vn~~~~~~vv~~i~~~T~gG 254 (366)
T COG1062 183 VEPGDTVAVFGLGGVGLAAIQGAKAAGAGRIIAVDINPEKLELAKKFGATHF--------VNPKEVDDVVEAIVELTDGG 254 (366)
T ss_pred CCCCCeEEEEeccHhHHHHHHHHHHcCCceEEEEeCCHHHHHHHHhcCCcee--------ecchhhhhHHHHHHHhcCCC
Confidence 34578899999985 4444555554556699999999999999998632110 110001 33332 23336
Q ss_pred eeEEEEcCCCCCCCCCCCCcHHHHHHHHhhccCCcEEEEEecC
Q 035593 150 FSGILVDLFSKGSLLSELEDPNTWEKLRQCLRKGGRIMVNVGG 192 (269)
Q Consensus 150 yD~I~~d~~~~~~~~~~l~~~e~~~~~~~~L~pgG~l~~~~~~ 192 (269)
.|..| |+.. ..+.++....++.++|..++--..
T Consensus 255 ~d~~~-e~~G---------~~~~~~~al~~~~~~G~~v~iGv~ 287 (366)
T COG1062 255 ADYAF-ECVG---------NVEVMRQALEATHRGGTSVIIGVA 287 (366)
T ss_pred CCEEE-EccC---------CHHHHHHHHHHHhcCCeEEEEecC
Confidence 67775 3222 346888888889899987775443
No 449
>PRK05476 S-adenosyl-L-homocysteine hydrolase; Provisional
Probab=84.01 E-value=9.2 Score=35.88 Aligned_cols=91 Identities=15% Similarity=0.148 Sum_probs=52.8
Q ss_pred CCCCCcEEEEcCcc-cHHHHHHHHHCCCceEEEEECChHHHHHHHHhcCccccccCCCCcEEEEEccccccccCCCeeEE
Q 035593 75 ILPPGPIGILGFGA-GSAARLILDLYPEAVIHGWELDPSVIKVAREFFALEKLEKSYPDRLFVYVGNALKASLKDGFSGI 153 (269)
Q Consensus 75 l~~~~~VL~iG~G~-G~~~~~l~~~~p~~~v~~vEidp~~~~~a~~~~~~~~~~~~~~~rv~~~~~D~~~~~~~~~yD~I 153 (269)
....++|+++|+|. |......++. -+.+|+++|++|.-...+... + +++. +..+. -+..|+|
T Consensus 209 ~l~Gk~VlViG~G~IG~~vA~~lr~-~Ga~ViV~d~dp~ra~~A~~~-G-----------~~v~--~l~ea--l~~aDVV 271 (425)
T PRK05476 209 LIAGKVVVVAGYGDVGKGCAQRLRG-LGARVIVTEVDPICALQAAMD-G-----------FRVM--TMEEA--AELGDIF 271 (425)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHh-CCCEEEEEcCCchhhHHHHhc-C-----------CEec--CHHHH--HhCCCEE
Confidence 34688999999983 3333333333 367999999999765444332 2 1111 11111 2368988
Q ss_pred EEcCCCCCCCCCCCCcHHHHH-HHHhhccCCcEEEEEecCC
Q 035593 154 LVDLFSKGSLLSELEDPNTWE-KLRQCLRKGGRIMVNVGGS 193 (269)
Q Consensus 154 ~~d~~~~~~~~~~l~~~e~~~-~~~~~L~pgG~l~~~~~~~ 193 (269)
+... . +...+. ...+.+|+|+++ +|....
T Consensus 272 I~aT-G---------~~~vI~~~~~~~mK~Gail-iNvG~~ 301 (425)
T PRK05476 272 VTAT-G---------NKDVITAEHMEAMKDGAIL-ANIGHF 301 (425)
T ss_pred EECC-C---------CHHHHHHHHHhcCCCCCEE-EEcCCC
Confidence 7532 1 244555 567788887766 455443
No 450
>PRK07454 short chain dehydrogenase; Provisional
Probab=83.56 E-value=11 Score=31.50 Aligned_cols=73 Identities=4% Similarity=-0.139 Sum_probs=46.6
Q ss_pred CCcEEEEcCcccHHHHHHHHHC--CCceEEEEECChHHHHHHHHhcCccccccCCCCcEEEEEccccccc----------
Q 035593 78 PGPIGILGFGAGSAARLILDLY--PEAVIHGWELDPSVIKVAREFFALEKLEKSYPDRLFVYVGNALKAS---------- 145 (269)
Q Consensus 78 ~~~VL~iG~G~G~~~~~l~~~~--p~~~v~~vEidp~~~~~a~~~~~~~~~~~~~~~rv~~~~~D~~~~~---------- 145 (269)
.+++|+.|+ +|.++..+.+++ .+.+|.+++.++.-.+...+.... ...++.++.+|..+..
T Consensus 6 ~k~vlItG~-sg~iG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~------~~~~~~~~~~D~~~~~~~~~~~~~~~ 78 (241)
T PRK07454 6 MPRALITGA-SSGIGKATALAFAKAGWDLALVARSQDALEALAAELRS------TGVKAAAYSIDLSNPEAIAPGIAELL 78 (241)
T ss_pred CCEEEEeCC-CchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHh------CCCcEEEEEccCCCHHHHHHHHHHHH
Confidence 467888885 566655555543 367999999998655444333221 1246888999987641
Q ss_pred -cCCCeeEEEEcC
Q 035593 146 -LKDGFSGILVDL 157 (269)
Q Consensus 146 -~~~~yD~I~~d~ 157 (269)
.-++.|+|+..+
T Consensus 79 ~~~~~id~lv~~a 91 (241)
T PRK07454 79 EQFGCPDVLINNA 91 (241)
T ss_pred HHcCCCCEEEECC
Confidence 124689998765
No 451
>KOG0023 consensus Alcohol dehydrogenase, class V [Secondary metabolites biosynthesis, transport and catabolism]
Probab=83.51 E-value=4.7 Score=36.25 Aligned_cols=100 Identities=14% Similarity=0.097 Sum_probs=63.1
Q ss_pred CCCCCcEEEEcCc-ccHHHHHHHHHCCCceEEEEECChHHHHHHHHhcCccccccCCCCcEEEEEcccccc-ccCCCeeE
Q 035593 75 ILPPGPIGILGFG-AGSAARLILDLYPEAVIHGWELDPSVIKVAREFFALEKLEKSYPDRLFVYVGNALKA-SLKDGFSG 152 (269)
Q Consensus 75 l~~~~~VL~iG~G-~G~~~~~l~~~~p~~~v~~vEidp~~~~~a~~~~~~~~~~~~~~~rv~~~~~D~~~~-~~~~~yD~ 152 (269)
+.|.++|-.+|+| -|.++...++.+ +.+|++++-+..--+.|-+.++.. .+-....|.-.. .-.+..|.
T Consensus 179 ~~pG~~vgI~GlGGLGh~aVq~AKAM-G~rV~vis~~~~kkeea~~~LGAd--------~fv~~~~d~d~~~~~~~~~dg 249 (360)
T KOG0023|consen 179 LGPGKWVGIVGLGGLGHMAVQYAKAM-GMRVTVISTSSKKKEEAIKSLGAD--------VFVDSTEDPDIMKAIMKTTDG 249 (360)
T ss_pred CCCCcEEEEecCcccchHHHHHHHHh-CcEEEEEeCCchhHHHHHHhcCcc--------eeEEecCCHHHHHHHHHhhcC
Confidence 3478899999986 577777777754 889999999987777777776632 111111122222 22345566
Q ss_pred EEEcCCCCCCCCCCCCcHHHHHHHHhhccCCcEEEEEec
Q 035593 153 ILVDLFSKGSLLSELEDPNTWEKLRQCLRKGGRIMVNVG 191 (269)
Q Consensus 153 I~~d~~~~~~~~~~l~~~e~~~~~~~~L~pgG~l~~~~~ 191 (269)
++....+ + ...-|+.+.+.||++|.+++--.
T Consensus 250 ~~~~v~~-------~-a~~~~~~~~~~lk~~Gt~V~vg~ 280 (360)
T KOG0023|consen 250 GIDTVSN-------L-AEHALEPLLGLLKVNGTLVLVGL 280 (360)
T ss_pred cceeeee-------c-cccchHHHHHHhhcCCEEEEEeC
Confidence 6532211 1 23456778889999999887543
No 452
>PRK09291 short chain dehydrogenase; Provisional
Probab=83.50 E-value=13 Score=31.37 Aligned_cols=73 Identities=15% Similarity=-0.083 Sum_probs=46.0
Q ss_pred CcEEEEcCcccHHHHHHHHHC--CCceEEEEECChHHHHHHHHhcCccccccCCCCcEEEEEcccccc-----ccCCCee
Q 035593 79 GPIGILGFGAGSAARLILDLY--PEAVIHGWELDPSVIKVAREFFALEKLEKSYPDRLFVYVGNALKA-----SLKDGFS 151 (269)
Q Consensus 79 ~~VL~iG~G~G~~~~~l~~~~--p~~~v~~vEidp~~~~~a~~~~~~~~~~~~~~~rv~~~~~D~~~~-----~~~~~yD 151 (269)
++||+.|+++ .++..+++.+ .+.+|+++..++.-.+..+...... ..++.++.+|..+. ....+.|
T Consensus 3 ~~vlVtGasg-~iG~~ia~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~------~~~~~~~~~D~~~~~~~~~~~~~~id 75 (257)
T PRK09291 3 KTILITGAGS-GFGREVALRLARKGHNVIAGVQIAPQVTALRAEAARR------GLALRVEKLDLTDAIDRAQAAEWDVD 75 (257)
T ss_pred CEEEEeCCCC-HHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhc------CCcceEEEeeCCCHHHHHHHhcCCCC
Confidence 4688888754 4455444432 4789999988876554444332211 24588888888764 1234799
Q ss_pred EEEEcCC
Q 035593 152 GILVDLF 158 (269)
Q Consensus 152 ~I~~d~~ 158 (269)
+|+.++.
T Consensus 76 ~vi~~ag 82 (257)
T PRK09291 76 VLLNNAG 82 (257)
T ss_pred EEEECCC
Confidence 9998754
No 453
>KOG2651 consensus rRNA adenine N-6-methyltransferase [RNA processing and modification]
Probab=83.32 E-value=2.1 Score=39.32 Aligned_cols=43 Identities=16% Similarity=0.181 Sum_probs=36.6
Q ss_pred CCCCcEEEEcCcccHHHHHHHHHCCCceEEEEECChHHHHHHHH
Q 035593 76 LPPGPIGILGFGAGSAARLILDLYPEAVIHGWELDPSVIKVARE 119 (269)
Q Consensus 76 ~~~~~VL~iG~G~G~~~~~l~~~~p~~~v~~vEidp~~~~~a~~ 119 (269)
.+-..+.|+|.|-|.+++++.-++ +..|.+||-|....+.|++
T Consensus 152 ~gi~~vvD~GaG~G~LSr~lSl~y-~lsV~aIegsq~~~~ra~r 194 (476)
T KOG2651|consen 152 TGIDQVVDVGAGQGHLSRFLSLGY-GLSVKAIEGSQRLVERAQR 194 (476)
T ss_pred cCCCeeEEcCCCchHHHHHHhhcc-CceEEEeccchHHHHHHHH
Confidence 356789999999999999998754 7899999999888777753
No 454
>cd08263 Zn_ADH10 Alcohol dehydrogenases of the MDR family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subu
Probab=83.29 E-value=24 Score=31.85 Aligned_cols=97 Identities=20% Similarity=0.344 Sum_probs=57.4
Q ss_pred CCCCCcEEEEcCc-ccHHHHHHHHHCCCce-EEEEECChHHHHHHHHhcCccccccCCCCcEEEEEcccc-cc---ccCC
Q 035593 75 ILPPGPIGILGFG-AGSAARLILDLYPEAV-IHGWELDPSVIKVAREFFALEKLEKSYPDRLFVYVGNAL-KA---SLKD 148 (269)
Q Consensus 75 l~~~~~VL~iG~G-~G~~~~~l~~~~p~~~-v~~vEidp~~~~~a~~~~~~~~~~~~~~~rv~~~~~D~~-~~---~~~~ 148 (269)
+.+..+||..|+| .|..+..+++.. +.+ +++++.+++..+.+++ ++... -+.....+.. .. ....
T Consensus 185 ~~~g~~VlI~g~g~vG~~~~~lak~~-G~~~vi~~~~s~~~~~~~~~-~g~~~-------v~~~~~~~~~~~l~~~~~~~ 255 (367)
T cd08263 185 VRPGETVAVIGVGGVGSSAIQLAKAF-GASPIIAVDVRDEKLAKAKE-LGATH-------TVNAAKEDAVAAIREITGGR 255 (367)
T ss_pred CCCCCEEEEECCcHHHHHHHHHHHHc-CCCeEEEEeCCHHHHHHHHH-hCCce-------EecCCcccHHHHHHHHhCCC
Confidence 3567789988654 344445555544 555 9999999988888754 44211 0111111111 11 2345
Q ss_pred CeeEEEEcCCCCCCCCCCCCcHHHHHHHHhhccCCcEEEEEe
Q 035593 149 GFSGILVDLFSKGSLLSELEDPNTWEKLRQCLRKGGRIMVNV 190 (269)
Q Consensus 149 ~yD~I~~d~~~~~~~~~~l~~~e~~~~~~~~L~pgG~l~~~~ 190 (269)
.+|+|+ |... ..+..+.+.++|+++|.++...
T Consensus 256 ~~d~vl-d~vg---------~~~~~~~~~~~l~~~G~~v~~g 287 (367)
T cd08263 256 GVDVVV-EALG---------KPETFKLALDVVRDGGRAVVVG 287 (367)
T ss_pred CCCEEE-EeCC---------CHHHHHHHHHHHhcCCEEEEEc
Confidence 699998 3321 1236788889999999887653
No 455
>PLN02819 lysine-ketoglutarate reductase/saccharopine dehydrogenase
Probab=83.27 E-value=18 Score=37.81 Aligned_cols=104 Identities=13% Similarity=0.015 Sum_probs=62.0
Q ss_pred CCcEEEEcCc--ccHHHHHHHHHCCCce-------------EEEEECChHHHHHHHHhcCccccccCCCCcEEEEEcccc
Q 035593 78 PGPIGILGFG--AGSAARLILDLYPEAV-------------IHGWELDPSVIKVAREFFALEKLEKSYPDRLFVYVGNAL 142 (269)
Q Consensus 78 ~~~VL~iG~G--~G~~~~~l~~~~p~~~-------------v~~vEidp~~~~~a~~~~~~~~~~~~~~~rv~~~~~D~~ 142 (269)
.++||+||+| +...+..|++ .++.+ |+++|++++-.+.+.+.+ ++++.+..|..
T Consensus 569 ~~rIlVLGAG~VG~~~a~~La~-~~~~~~~~~~~~~~~~~lV~VaD~~~~~a~~la~~~----------~~~~~v~lDv~ 637 (1042)
T PLN02819 569 SQNVLILGAGRVCRPAAEYLAS-VKTISYYGDDSEEPTDVHVIVASLYLKDAKETVEGI----------ENAEAVQLDVS 637 (1042)
T ss_pred CCcEEEECCCHHHHHHHHHHHh-CcCccccccccccccccEEEEECCCHHHHHHHHHhc----------CCCceEEeecC
Confidence 6799999998 3344455544 46554 999999987766544432 23455555554
Q ss_pred cc----ccCCCeeEEEEcCCCCCCC---------CCCC----CcHHHHHHHHhhccCCcEEEEEecC
Q 035593 143 KA----SLKDGFSGILVDLFSKGSL---------LSEL----EDPNTWEKLRQCLRKGGRIMVNVGG 192 (269)
Q Consensus 143 ~~----~~~~~yD~I~~d~~~~~~~---------~~~l----~~~e~~~~~~~~L~pgG~l~~~~~~ 192 (269)
+. ..-...|+|++.++...+. --|+ +..+-.+++.+.-+..|+.+++-.+
T Consensus 638 D~e~L~~~v~~~DaVIsalP~~~H~~VAkaAieaGkHvv~eky~~~e~~~L~e~Ak~AGV~~m~e~G 704 (1042)
T PLN02819 638 DSESLLKYVSQVDVVISLLPASCHAVVAKACIELKKHLVTASYVSEEMSALDSKAKEAGITILCEMG 704 (1042)
T ss_pred CHHHHHHhhcCCCEEEECCCchhhHHHHHHHHHcCCCEEECcCCHHHHHHHHHHHHHcCCEEEECCc
Confidence 43 2114599999876543211 0121 2334455566666777888777765
No 456
>PLN02427 UDP-apiose/xylose synthase
Probab=83.25 E-value=4.2 Score=37.16 Aligned_cols=75 Identities=13% Similarity=0.011 Sum_probs=45.9
Q ss_pred CCcEEEEcCcccHHHHHHHHHCC---CceEEEEECChHHHHHHHHhcCccccccCCCCcEEEEEcccccc----ccCCCe
Q 035593 78 PGPIGILGFGAGSAARLILDLYP---EAVIHGWELDPSVIKVAREFFALEKLEKSYPDRLFVYVGNALKA----SLKDGF 150 (269)
Q Consensus 78 ~~~VL~iG~G~G~~~~~l~~~~p---~~~v~~vEidp~~~~~a~~~~~~~~~~~~~~~rv~~~~~D~~~~----~~~~~y 150 (269)
+.+||+.| |+|.++.++.+.+- +.+|.+++.++.-.+..... +... ..++++++.+|..+. ..-..+
T Consensus 14 ~~~VlVTG-gtGfIGs~lv~~L~~~~g~~V~~l~r~~~~~~~l~~~-~~~~----~~~~~~~~~~Dl~d~~~l~~~~~~~ 87 (386)
T PLN02427 14 PLTICMIG-AGGFIGSHLCEKLMTETPHKVLALDVYNDKIKHLLEP-DTVP----WSGRIQFHRINIKHDSRLEGLIKMA 87 (386)
T ss_pred CcEEEEEC-CcchHHHHHHHHHHhcCCCEEEEEecCchhhhhhhcc-cccc----CCCCeEEEEcCCCChHHHHHHhhcC
Confidence 56899888 56777776666442 36899999776433221111 0001 124799999999875 222358
Q ss_pred eEEEEcCC
Q 035593 151 SGILVDLF 158 (269)
Q Consensus 151 D~I~~d~~ 158 (269)
|+||.-+.
T Consensus 88 d~ViHlAa 95 (386)
T PLN02427 88 DLTINLAA 95 (386)
T ss_pred CEEEEccc
Confidence 99987553
No 457
>PRK06079 enoyl-(acyl carrier protein) reductase; Provisional
Probab=83.25 E-value=17 Score=30.94 Aligned_cols=72 Identities=11% Similarity=0.044 Sum_probs=46.8
Q ss_pred CCCcEEEEcCcc-cHHHHHHHHHC--CCceEEEEECChHHHHHHHHhcCccccccCCCCcEEEEEcccccc---------
Q 035593 77 PPGPIGILGFGA-GSAARLILDLY--PEAVIHGWELDPSVIKVAREFFALEKLEKSYPDRLFVYVGNALKA--------- 144 (269)
Q Consensus 77 ~~~~VL~iG~G~-G~~~~~l~~~~--p~~~v~~vEidp~~~~~a~~~~~~~~~~~~~~~rv~~~~~D~~~~--------- 144 (269)
..+.+|+.|+++ +.+++.+++++ .+.+|..+..+....+.+++.. ..++.++..|..+.
T Consensus 6 ~~k~~lItGas~~~gIG~a~a~~la~~G~~Vi~~~r~~~~~~~~~~~~---------~~~~~~~~~Dl~~~~~v~~~~~~ 76 (252)
T PRK06079 6 SGKKIVVMGVANKRSIAWGCAQAIKDQGATVIYTYQNDRMKKSLQKLV---------DEEDLLVECDVASDESIERAFAT 76 (252)
T ss_pred CCCEEEEeCCCCCCchHHHHHHHHHHCCCEEEEecCchHHHHHHHhhc---------cCceeEEeCCCCCHHHHHHHHHH
Confidence 467899999874 45665555544 4789998888755444333321 23577888888754
Q ss_pred --ccCCCeeEEEEcC
Q 035593 145 --SLKDGFSGILVDL 157 (269)
Q Consensus 145 --~~~~~yD~I~~d~ 157 (269)
..-++.|+++.++
T Consensus 77 ~~~~~g~iD~lv~nA 91 (252)
T PRK06079 77 IKERVGKIDGIVHAI 91 (252)
T ss_pred HHHHhCCCCEEEEcc
Confidence 1235789999875
No 458
>PLN02712 arogenate dehydrogenase
Probab=83.23 E-value=13 Score=37.00 Aligned_cols=92 Identities=16% Similarity=0.195 Sum_probs=55.1
Q ss_pred CCCcEEEEcCc--ccHHHHHHHHHCCCceEEEEECChHHHHHHHHhcCccccccCCCCcEEEEEccccccccCCCeeEEE
Q 035593 77 PPGPIGILGFG--AGSAARLILDLYPEAVIHGWELDPSVIKVAREFFALEKLEKSYPDRLFVYVGNALKASLKDGFSGIL 154 (269)
Q Consensus 77 ~~~~VL~iG~G--~G~~~~~l~~~~p~~~v~~vEidp~~~~~a~~~~~~~~~~~~~~~rv~~~~~D~~~~~~~~~yD~I~ 154 (269)
...+|..||+| ++.++..+.+ .+.+|.+++.++.. +.+++ ++ +. ...|..+.. ....|+|+
T Consensus 368 ~~~kIgIIGlG~mG~slA~~L~~--~G~~V~~~dr~~~~-~~a~~-~G-----------v~-~~~~~~el~-~~~aDvVI 430 (667)
T PLN02712 368 SKLKIAIVGFGNFGQFLAKTMVK--QGHTVLAYSRSDYS-DEAQK-LG-----------VS-YFSDADDLC-EEHPEVIL 430 (667)
T ss_pred CCCEEEEEecCHHHHHHHHHHHH--CcCEEEEEECChHH-HHHHH-cC-----------Ce-EeCCHHHHH-hcCCCEEE
Confidence 36789999988 4666666655 35689999998653 33332 22 22 122322221 12479999
Q ss_pred EcCCCCCCCCCCCCcHHHHHHHHh-hccCCcEEEEEecCC
Q 035593 155 VDLFSKGSLLSELEDPNTWEKLRQ-CLRKGGRIMVNVGGS 193 (269)
Q Consensus 155 ~d~~~~~~~~~~l~~~e~~~~~~~-~L~pgG~l~~~~~~~ 193 (269)
+..... .+.++++.+.. .+++ |.+++++.+.
T Consensus 431 LavP~~-------~~~~vi~~l~~~~lk~-g~ivvDv~Sv 462 (667)
T PLN02712 431 LCTSIL-------STEKVLKSLPFQRLKR-STLFVDVLSV 462 (667)
T ss_pred ECCChH-------HHHHHHHHHHHhcCCC-CcEEEECCCc
Confidence 864422 25677777764 5666 5667788654
No 459
>PF11899 DUF3419: Protein of unknown function (DUF3419); InterPro: IPR021829 This family of proteins are functionally uncharacterised. This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 398 to 802 amino acids in length.
Probab=83.19 E-value=2.5 Score=38.99 Aligned_cols=43 Identities=19% Similarity=0.207 Sum_probs=34.6
Q ss_pred CCCCCCcEEEEcCcccHHHHHHHHHCCCceEEEEECChHHHHHHH
Q 035593 74 PILPPGPIGILGFGAGSAARLILDLYPEAVIHGWELDPSVIKVAR 118 (269)
Q Consensus 74 ~l~~~~~VL~iG~G~G~~~~~l~~~~p~~~v~~vEidp~~~~~a~ 118 (269)
.+.|..+||.|..|+.....+|.+ ...+|++||+||.-..+.+
T Consensus 32 ~i~~~d~vl~ItSaG~N~L~yL~~--~P~~I~aVDlNp~Q~aLle 74 (380)
T PF11899_consen 32 NIGPDDRVLTITSAGCNALDYLLA--GPKRIHAVDLNPAQNALLE 74 (380)
T ss_pred CCCCCCeEEEEccCCchHHHHHhc--CCceEEEEeCCHHHHHHHH
Confidence 566888999999887777777665 3469999999999887765
No 460
>cd08240 6_hydroxyhexanoate_dh_like 6-hydroxyhexanoate dehydrogenase. 6-hydroxyhexanoate dehydrogenase, an enzyme of the zinc-dependent alcohol dehydrogenase-like family of medium chain dehydrogenases/reductases catalyzes the conversion of 6-hydroxyhexanoate and NAD(+) to 6-oxohexanoate + NADH and H+. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzy
Probab=83.12 E-value=23 Score=31.59 Aligned_cols=92 Identities=22% Similarity=0.372 Sum_probs=56.1
Q ss_pred CCCCCcEEEEcCc-ccHHHHHHHHHCCCc-eEEEEECChHHHHHHHHhcCccccccCCCCcEEEEEc---cc-ccc--cc
Q 035593 75 ILPPGPIGILGFG-AGSAARLILDLYPEA-VIHGWELDPSVIKVAREFFALEKLEKSYPDRLFVYVG---NA-LKA--SL 146 (269)
Q Consensus 75 l~~~~~VL~iG~G-~G~~~~~l~~~~p~~-~v~~vEidp~~~~~a~~~~~~~~~~~~~~~rv~~~~~---D~-~~~--~~ 146 (269)
+.+..+||..|+| .|..+..+++.. +. +|++++.+++-.+.+++ ++.. .++.. +. ... ..
T Consensus 173 ~~~~~~vlI~g~g~vg~~~~~~a~~~-G~~~v~~~~~~~~~~~~~~~-~g~~----------~~~~~~~~~~~~~~~~~~ 240 (350)
T cd08240 173 LVADEPVVIIGAGGLGLMALALLKAL-GPANIIVVDIDEAKLEAAKA-AGAD----------VVVNGSDPDAAKRIIKAA 240 (350)
T ss_pred CCCCCEEEEECCcHHHHHHHHHHHHc-CCCeEEEEeCCHHHHHHHHH-hCCc----------EEecCCCccHHHHHHHHh
Confidence 3357789998764 344445555543 55 79999999988888855 4421 11111 11 111 11
Q ss_pred CCCeeEEEEcCCCCCCCCCCCCcHHHHHHHHhhccCCcEEEE
Q 035593 147 KDGFSGILVDLFSKGSLLSELEDPNTWEKLRQCLRKGGRIMV 188 (269)
Q Consensus 147 ~~~yD~I~~d~~~~~~~~~~l~~~e~~~~~~~~L~pgG~l~~ 188 (269)
.+.+|+|+ |... ....+..+.++|+++|.++.
T Consensus 241 ~~~~d~vi-d~~g---------~~~~~~~~~~~l~~~g~~v~ 272 (350)
T cd08240 241 GGGVDAVI-DFVN---------NSATASLAFDILAKGGKLVL 272 (350)
T ss_pred CCCCcEEE-ECCC---------CHHHHHHHHHHhhcCCeEEE
Confidence 22689998 3321 13568888999999999875
No 461
>PRK08762 molybdopterin biosynthesis protein MoeB; Validated
Probab=82.90 E-value=6 Score=36.36 Aligned_cols=34 Identities=24% Similarity=0.235 Sum_probs=23.2
Q ss_pred CCCcEEEEcCcc-cHHHHHHHHHCCCceEEEEECC
Q 035593 77 PPGPIGILGFGA-GSAARLILDLYPEAVIHGWELD 110 (269)
Q Consensus 77 ~~~~VL~iG~G~-G~~~~~l~~~~p~~~v~~vEid 110 (269)
...+||.+|||+ |+.....+.+..-.+++.+|-|
T Consensus 134 ~~~~VlvvG~GG~Gs~ia~~La~~Gvg~i~lvD~d 168 (376)
T PRK08762 134 LEARVLLIGAGGLGSPAALYLAAAGVGTLGIVDHD 168 (376)
T ss_pred hcCcEEEECCCHHHHHHHHHHHHcCCCeEEEEeCC
Confidence 478999999983 5444333333344589999988
No 462
>PF01488 Shikimate_DH: Shikimate / quinate 5-dehydrogenase; InterPro: IPR006151 This entry represents a domain found in shikimate and quinate dehydrogenases, as well as glutamyl-tRNA reductases. Shikimate 5-dehydrogenase (1.1.1.25 from EC) catalyses the conversion of shikimate to 5-dehydroshikimate [, ]. This reaction is part of the shikimate pathway which is involved in the biosynthesis of aromatic amino acids []. Quinate 5-dehydrogenase catalyses the conversion of quinate to 5-dehydroquinate. This reaction is part of the quinate pathway where quinic acid is exploited as a source of carbon in prokaryotes and microbial eukaryotes. Both the shikimate and quinate pathways share two common pathway metabolites, 3-dehydroquinate and dehydroshikimate. Glutamyl-tRNA reductase (1.2.1.70 from EC) catalyzes the first step of tetrapyrrole biosynthesis in plants, archaea and most bacteria. The dimeric enzyme has an unusual V-shaped architecture where each monomer consists of three domains linked by a long 'spinal' alpha-helix. The central catalytic domain specifically recognises the glutamate moiety of the substrate []. ; PDB: 2EV9_B 2CY0_B 1WXD_A 2D5C_A 1NVT_B 2EGG_A 3PWZ_A 3DOO_A 3DON_A 3FBT_C ....
Probab=82.88 E-value=9.4 Score=29.51 Aligned_cols=96 Identities=10% Similarity=0.036 Sum_probs=51.7
Q ss_pred CCCcEEEEcCcc-cH-HHHHHHHHCCCceEEEEECChHHHHHHHHhcCccccccCCCCcEEEEEccccccccCCCeeEEE
Q 035593 77 PPGPIGILGFGA-GS-AARLILDLYPEAVIHGWELDPSVIKVAREFFALEKLEKSYPDRLFVYVGNALKASLKDGFSGIL 154 (269)
Q Consensus 77 ~~~~VL~iG~G~-G~-~~~~l~~~~p~~~v~~vEidp~~~~~a~~~~~~~~~~~~~~~rv~~~~~D~~~~~~~~~yD~I~ 154 (269)
..++||.||+|+ |. .+.+|.. ..-.+|+.+..+++-.+...+.++ ...++++.-+-.. .....+|+|+
T Consensus 11 ~~~~vlviGaGg~ar~v~~~L~~-~g~~~i~i~nRt~~ra~~l~~~~~--------~~~~~~~~~~~~~-~~~~~~DivI 80 (135)
T PF01488_consen 11 KGKRVLVIGAGGAARAVAAALAA-LGAKEITIVNRTPERAEALAEEFG--------GVNIEAIPLEDLE-EALQEADIVI 80 (135)
T ss_dssp TTSEEEEESSSHHHHHHHHHHHH-TTSSEEEEEESSHHHHHHHHHHHT--------GCSEEEEEGGGHC-HHHHTESEEE
T ss_pred CCCEEEEECCHHHHHHHHHHHHH-cCCCEEEEEECCHHHHHHHHHHcC--------ccccceeeHHHHH-HHHhhCCeEE
Confidence 478999999873 22 2233333 333469999999876555444442 1345555433221 2345799999
Q ss_pred EcCCCCCCCCCCCCcHHHHHHHHhhccCCcE-EEEEec
Q 035593 155 VDLFSKGSLLSELEDPNTWEKLRQCLRKGGR-IMVNVG 191 (269)
Q Consensus 155 ~d~~~~~~~~~~l~~~e~~~~~~~~L~pgG~-l~~~~~ 191 (269)
.....+ ....+.+.+...... . +++.+.
T Consensus 81 ~aT~~~----~~~i~~~~~~~~~~~-----~~~v~Dla 109 (135)
T PF01488_consen 81 NATPSG----MPIITEEMLKKASKK-----LRLVIDLA 109 (135)
T ss_dssp E-SSTT----STSSTHHHHTTTCHH-----CSEEEES-
T ss_pred EecCCC----CcccCHHHHHHHHhh-----hhceeccc
Confidence 754322 123345554433322 3 677774
No 463
>cd08296 CAD_like Cinnamyl alcohol dehydrogenases (CAD). Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catal
Probab=82.64 E-value=9.9 Score=33.80 Aligned_cols=97 Identities=13% Similarity=0.085 Sum_probs=57.5
Q ss_pred CCCCCcEEEEcCc-ccHHHHHHHHHCCCceEEEEECChHHHHHHHHhcCccccccCCCCcEEEEEccccc-cccCCCeeE
Q 035593 75 ILPPGPIGILGFG-AGSAARLILDLYPEAVIHGWELDPSVIKVAREFFALEKLEKSYPDRLFVYVGNALK-ASLKDGFSG 152 (269)
Q Consensus 75 l~~~~~VL~iG~G-~G~~~~~l~~~~p~~~v~~vEidp~~~~~a~~~~~~~~~~~~~~~rv~~~~~D~~~-~~~~~~yD~ 152 (269)
+.+..+||..|+| .|..+..+++. -+.+|++++.+++-.+.+++ ++... -+.....|... ......+|+
T Consensus 161 ~~~~~~vlV~g~g~iG~~~~~~a~~-~G~~vi~~~~~~~~~~~~~~-~g~~~-------~i~~~~~~~~~~~~~~~~~d~ 231 (333)
T cd08296 161 AKPGDLVAVQGIGGLGHLAVQYAAK-MGFRTVAISRGSDKADLARK-LGAHH-------YIDTSKEDVAEALQELGGAKL 231 (333)
T ss_pred CCCCCEEEEECCcHHHHHHHHHHHH-CCCeEEEEeCChHHHHHHHH-cCCcE-------EecCCCccHHHHHHhcCCCCE
Confidence 4467899999854 33444455554 36789999999988888855 44211 01111111111 111235898
Q ss_pred EEEcCCCCCCCCCCCCcHHHHHHHHhhccCCcEEEEEe
Q 035593 153 ILVDLFSKGSLLSELEDPNTWEKLRQCLRKGGRIMVNV 190 (269)
Q Consensus 153 I~~d~~~~~~~~~~l~~~e~~~~~~~~L~pgG~l~~~~ 190 (269)
|+ |... ....+..+.++|+++|.++.-.
T Consensus 232 vi-~~~g---------~~~~~~~~~~~l~~~G~~v~~g 259 (333)
T cd08296 232 IL-ATAP---------NAKAISALVGGLAPRGKLLILG 259 (333)
T ss_pred EE-ECCC---------chHHHHHHHHHcccCCEEEEEe
Confidence 87 3221 1356777888999999887643
No 464
>TIGR00497 hsdM type I restriction system adenine methylase (hsdM). Function: methylation of specific adenine residues; required for both restriction and modification activities. The ECOR124/3 I enzyme recognizes 5'GAA(N7)RTCG. for E.coli see (J. Mol. Biol. 257: 960-969 (1996)).
Probab=82.46 E-value=9.9 Score=36.41 Aligned_cols=111 Identities=12% Similarity=0.081 Sum_probs=70.2
Q ss_pred CCCcEEEEcCcccHHHHHHHHHC----CCceEEEEECChHHHHHHHHhcCccccccCCCCcEEEEEccccc-c--ccCCC
Q 035593 77 PPGPIGILGFGAGSAARLILDLY----PEAVIHGWELDPSVIKVAREFFALEKLEKSYPDRLFVYVGNALK-A--SLKDG 149 (269)
Q Consensus 77 ~~~~VL~iG~G~G~~~~~l~~~~----p~~~v~~vEidp~~~~~a~~~~~~~~~~~~~~~rv~~~~~D~~~-~--~~~~~ 149 (269)
|...|.+.-||+|.+.....+.. ....+++-|+++.+...|+.++.+... ..+......+|-.. + ....+
T Consensus 217 p~~~~~Dp~~Gsg~~L~~~~~~~~~~qe~~~~~gqe~~~~~~~~a~mnm~l~~~---~~~t~~~~~~dtl~~~d~~~~~~ 293 (501)
T TIGR00497 217 TVDDVYDMACGSGSLLLQVIKVLGEKTSLVSYYGQEINHTTYNLCRMNMILHNI---DYANFNIINADTLTTKEWENENG 293 (501)
T ss_pred CCCcccccccchHHHHHHHHHHhcccccceeEEEEeCchHHHHHHHHHHHHcCC---CccccCcccCCcCCCcccccccc
Confidence 44689999999999887654322 135799999999999999987543221 01223343444433 2 23456
Q ss_pred eeEEEEcCCCCC-C----CC--------------CCC--CcHHHHHHHHhhccCCcEEEEEe
Q 035593 150 FSGILVDLFSKG-S----LL--------------SEL--EDPNTWEKLRQCLRKGGRIMVNV 190 (269)
Q Consensus 150 yD~I~~d~~~~~-~----~~--------------~~l--~~~e~~~~~~~~L~pgG~l~~~~ 190 (269)
||.|+.+.+... . .+ +++ ....|+..+..+|++||...+-.
T Consensus 294 ~D~v~~NpPf~~~~~~~~~~~~~~~d~~~~~~~l~~~~~~~~afi~h~~~~L~~gG~~aiI~ 355 (501)
T TIGR00497 294 FEVVVSNPPYSISWAGDKKSNLVSDVRFKDAGTLAPNSKADLAFVLHALYVLGQEGTAAIVC 355 (501)
T ss_pred CCEEeecCCcccccccccccccccccchhcccCCCCCchhhHHHHHHHHHhcCCCCeEEEEe
Confidence 999987753221 0 01 011 13478889999999999766554
No 465
>PRK05597 molybdopterin biosynthesis protein MoeB; Validated
Probab=82.37 E-value=6.8 Score=35.78 Aligned_cols=34 Identities=21% Similarity=0.208 Sum_probs=22.9
Q ss_pred CCCcEEEEcCcc-cHHH-HHHHHHCCCceEEEEECCh
Q 035593 77 PPGPIGILGFGA-GSAA-RLILDLYPEAVIHGWELDP 111 (269)
Q Consensus 77 ~~~~VL~iG~G~-G~~~-~~l~~~~p~~~v~~vEidp 111 (269)
...+||.+|||+ |+.. ..|+. ..-.+++.+|-|.
T Consensus 27 ~~~~VlivG~GGlGs~~a~~La~-~Gvg~i~lvD~D~ 62 (355)
T PRK05597 27 FDAKVAVIGAGGLGSPALLYLAG-AGVGHITIIDDDT 62 (355)
T ss_pred hCCeEEEECCCHHHHHHHHHHHH-cCCCeEEEEeCCE
Confidence 367999999984 4433 44443 3345899999775
No 466
>PF07757 AdoMet_MTase: Predicted AdoMet-dependent methyltransferase; InterPro: IPR011671 tRNA (uracil-O(2)-)-methyltransferase catalyses the formation of O(2)-methyl-uracil at position 44 (m2U44) in tRNA(Ser) [].; GO: 0008168 methyltransferase activity
Probab=82.22 E-value=1.4 Score=33.06 Aligned_cols=31 Identities=16% Similarity=0.039 Sum_probs=24.7
Q ss_pred CCCcEEEEcCcccHHHHHHHHHCCCceEEEEEC
Q 035593 77 PPGPIGILGFGAGSAARLILDLYPEAVIHGWEL 109 (269)
Q Consensus 77 ~~~~VL~iG~G~G~~~~~l~~~~p~~~v~~vEi 109 (269)
++....|||||.|.+..-|.. .+.+=.++|.
T Consensus 58 ~~~~FVDlGCGNGLLV~IL~~--EGy~G~GiD~ 88 (112)
T PF07757_consen 58 KFQGFVDLGCGNGLLVYILNS--EGYPGWGIDA 88 (112)
T ss_pred CCCceEEccCCchHHHHHHHh--CCCCcccccc
Confidence 467899999999999988876 4555566665
No 467
>PRK06194 hypothetical protein; Provisional
Probab=82.17 E-value=15 Score=31.71 Aligned_cols=74 Identities=5% Similarity=-0.120 Sum_probs=46.6
Q ss_pred CCcEEEEcCcccHHHHHHHHHC--CCceEEEEECChHHHHHHHHhcCccccccCCCCcEEEEEcccccc-----------
Q 035593 78 PGPIGILGFGAGSAARLILDLY--PEAVIHGWELDPSVIKVAREFFALEKLEKSYPDRLFVYVGNALKA----------- 144 (269)
Q Consensus 78 ~~~VL~iG~G~G~~~~~l~~~~--p~~~v~~vEidp~~~~~a~~~~~~~~~~~~~~~rv~~~~~D~~~~----------- 144 (269)
.++||+.|++ |.++..+.+.+ .+.+|++++.+++..+...+.+... ..++.++.+|..+.
T Consensus 6 ~k~vlVtGas-ggIG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~------~~~~~~~~~D~~d~~~~~~~~~~~~ 78 (287)
T PRK06194 6 GKVAVITGAA-SGFGLAFARIGAALGMKLVLADVQQDALDRAVAELRAQ------GAEVLGVRTDVSDAAQVEALADAAL 78 (287)
T ss_pred CCEEEEeCCc-cHHHHHHHHHHHHCCCEEEEEeCChHHHHHHHHHHHhc------CCeEEEEECCCCCHHHHHHHHHHHH
Confidence 4678888865 44444444332 3779999999877655444333211 24688899998764
Q ss_pred ccCCCeeEEEEcCC
Q 035593 145 SLKDGFSGILVDLF 158 (269)
Q Consensus 145 ~~~~~yD~I~~d~~ 158 (269)
...++.|+|+..+.
T Consensus 79 ~~~g~id~vi~~Ag 92 (287)
T PRK06194 79 ERFGAVHLLFNNAG 92 (287)
T ss_pred HHcCCCCEEEECCC
Confidence 11246899998754
No 468
>PRK12744 short chain dehydrogenase; Provisional
Probab=82.15 E-value=18 Score=30.75 Aligned_cols=105 Identities=10% Similarity=-0.066 Sum_probs=55.3
Q ss_pred CCcEEEEcCcccHHHHHHHHHC--CCceEEEEECC----hHHHHHHHHhcCccccccCCCCcEEEEEcccccc-------
Q 035593 78 PGPIGILGFGAGSAARLILDLY--PEAVIHGWELD----PSVIKVAREFFALEKLEKSYPDRLFVYVGNALKA------- 144 (269)
Q Consensus 78 ~~~VL~iG~G~G~~~~~l~~~~--p~~~v~~vEid----p~~~~~a~~~~~~~~~~~~~~~rv~~~~~D~~~~------- 144 (269)
.+++|+.|++ |.++..+++++ .+.++..+..+ .+..+...+.... .+.++.++..|..+.
T Consensus 8 ~k~vlItGa~-~gIG~~~a~~l~~~G~~vv~i~~~~~~~~~~~~~~~~~l~~------~~~~~~~~~~D~~~~~~~~~~~ 80 (257)
T PRK12744 8 GKVVLIAGGA-KNLGGLIARDLAAQGAKAVAIHYNSAASKADAEETVAAVKA------AGAKAVAFQADLTTAAAVEKLF 80 (257)
T ss_pred CcEEEEECCC-chHHHHHHHHHHHCCCcEEEEecCCccchHHHHHHHHHHHH------hCCcEEEEecCcCCHHHHHHHH
Confidence 5688888864 45565555543 36676666543 2222222222211 124688889998754
Q ss_pred ----ccCCCeeEEEEcCCCCCCCC-CCC--------------CcHHHHHHHHhhccCCcEEEEE
Q 035593 145 ----SLKDGFSGILVDLFSKGSLL-SEL--------------EDPNTWEKLRQCLRKGGRIMVN 189 (269)
Q Consensus 145 ----~~~~~yD~I~~d~~~~~~~~-~~l--------------~~~e~~~~~~~~L~pgG~l~~~ 189 (269)
...++.|+++..+......+ ... ....+++.+...++++|.+++.
T Consensus 81 ~~~~~~~~~id~li~~ag~~~~~~~~~~~~~~~~~~~~~N~~~~~~~~~~~~~~~~~~~~iv~~ 144 (257)
T PRK12744 81 DDAKAAFGRPDIAINTVGKVLKKPIVEISEAEYDEMFAVNSKSAFFFIKEAGRHLNDNGKIVTL 144 (257)
T ss_pred HHHHHhhCCCCEEEECCcccCCCCcccCCHHHHHHHHhhhhhHHHHHHHHHHHhhccCCCEEEE
Confidence 11357899997654311000 011 1113446666677777776654
No 469
>PRK09599 6-phosphogluconate dehydrogenase-like protein; Reviewed
Probab=82.14 E-value=17 Score=32.22 Aligned_cols=92 Identities=18% Similarity=0.272 Sum_probs=54.9
Q ss_pred cEEEEcCcc--cHHHHHHHHHCCCceEEEEECChHHHHHHHHhcCccccccCCCCcEEEEEcccccc-ccCCCeeEEEEc
Q 035593 80 PIGILGFGA--GSAARLILDLYPEAVIHGWELDPSVIKVAREFFALEKLEKSYPDRLFVYVGNALKA-SLKDGFSGILVD 156 (269)
Q Consensus 80 ~VL~iG~G~--G~~~~~l~~~~p~~~v~~vEidp~~~~~a~~~~~~~~~~~~~~~rv~~~~~D~~~~-~~~~~yD~I~~d 156 (269)
+|..||+|. ..++..|++ .+.+|++.|.+++.++.+.+. + +++ ..+..+. ..-...|+|++.
T Consensus 2 ~Ig~IGlG~MG~~mA~~L~~--~g~~v~v~dr~~~~~~~~~~~-g-----------~~~-~~~~~e~~~~~~~~dvvi~~ 66 (301)
T PRK09599 2 QLGMIGLGRMGGNMARRLLR--GGHEVVGYDRNPEAVEALAEE-G-----------ATG-ADSLEELVAKLPAPRVVWLM 66 (301)
T ss_pred EEEEEcccHHHHHHHHHHHH--CCCeEEEEECCHHHHHHHHHC-C-----------Cee-cCCHHHHHhhcCCCCEEEEE
Confidence 588899883 345566655 467899999999887765442 2 111 1222222 111235888876
Q ss_pred CCCCCCCCCCCCcHHHHHHHHhhccCCcEEEEEecCC
Q 035593 157 LFSKGSLLSELEDPNTWEKLRQCLRKGGRIMVNVGGS 193 (269)
Q Consensus 157 ~~~~~~~~~~l~~~e~~~~~~~~L~pgG~l~~~~~~~ 193 (269)
+.+.. ...+.+..+...|++| .+++++...
T Consensus 67 v~~~~------~~~~v~~~l~~~l~~g-~ivid~st~ 96 (301)
T PRK09599 67 VPAGE------ITDATIDELAPLLSPG-DIVIDGGNS 96 (301)
T ss_pred ecCCc------HHHHHHHHHHhhCCCC-CEEEeCCCC
Confidence 54321 1356677788888875 555666443
No 470
>PRK07102 short chain dehydrogenase; Provisional
Probab=82.14 E-value=13 Score=31.13 Aligned_cols=73 Identities=16% Similarity=0.024 Sum_probs=45.8
Q ss_pred CcEEEEcCcccHHHHHHHHHC--CCceEEEEECChHHHHHHHHhcCccccccCCCCcEEEEEcccccc--------ccCC
Q 035593 79 GPIGILGFGAGSAARLILDLY--PEAVIHGWELDPSVIKVAREFFALEKLEKSYPDRLFVYVGNALKA--------SLKD 148 (269)
Q Consensus 79 ~~VL~iG~G~G~~~~~l~~~~--p~~~v~~vEidp~~~~~a~~~~~~~~~~~~~~~rv~~~~~D~~~~--------~~~~ 148 (269)
++|++.|+. |.++..+.+++ .+.+|++++.+++-.+...+...... ..+++++..|..+. ....
T Consensus 2 ~~vlItGas-~giG~~~a~~l~~~G~~Vi~~~r~~~~~~~~~~~~~~~~-----~~~~~~~~~Dl~~~~~~~~~~~~~~~ 75 (243)
T PRK07102 2 KKILIIGAT-SDIARACARRYAAAGARLYLAARDVERLERLADDLRARG-----AVAVSTHELDILDTASHAAFLDSLPA 75 (243)
T ss_pred cEEEEEcCC-cHHHHHHHHHHHhcCCEEEEEeCCHHHHHHHHHHHHHhc-----CCeEEEEecCCCChHHHHHHHHHHhh
Confidence 468888854 55555544433 36799999999875543333221111 35789999998865 1123
Q ss_pred CeeEEEEcC
Q 035593 149 GFSGILVDL 157 (269)
Q Consensus 149 ~yD~I~~d~ 157 (269)
++|.++..+
T Consensus 76 ~~d~vv~~a 84 (243)
T PRK07102 76 LPDIVLIAV 84 (243)
T ss_pred cCCEEEECC
Confidence 579999764
No 471
>PRK07814 short chain dehydrogenase; Provisional
Probab=81.90 E-value=15 Score=31.47 Aligned_cols=74 Identities=9% Similarity=-0.026 Sum_probs=47.4
Q ss_pred CCCcEEEEcCcccHHHHHHHHHC--CCceEEEEECChHHHHHHHHhcCccccccCCCCcEEEEEccccccc---------
Q 035593 77 PPGPIGILGFGAGSAARLILDLY--PEAVIHGWELDPSVIKVAREFFALEKLEKSYPDRLFVYVGNALKAS--------- 145 (269)
Q Consensus 77 ~~~~VL~iG~G~G~~~~~l~~~~--p~~~v~~vEidp~~~~~a~~~~~~~~~~~~~~~rv~~~~~D~~~~~--------- 145 (269)
+.+.+|+.|+ +|.++..+.+++ .+.+|.+++.+++-.+...+..... ..+++++..|..+..
T Consensus 9 ~~~~vlItGa-sggIG~~~a~~l~~~G~~Vi~~~r~~~~~~~~~~~l~~~------~~~~~~~~~D~~~~~~~~~~~~~~ 81 (263)
T PRK07814 9 DDQVAVVTGA-GRGLGAAIALAFAEAGADVLIAARTESQLDEVAEQIRAA------GRRAHVVAADLAHPEATAGLAGQA 81 (263)
T ss_pred CCCEEEEECC-CChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhc------CCcEEEEEccCCCHHHHHHHHHHH
Confidence 4577888886 455555555433 3779999999887655444333111 246888888887641
Q ss_pred --cCCCeeEEEEcC
Q 035593 146 --LKDGFSGILVDL 157 (269)
Q Consensus 146 --~~~~yD~I~~d~ 157 (269)
.-++.|+|+..+
T Consensus 82 ~~~~~~id~vi~~A 95 (263)
T PRK07814 82 VEAFGRLDIVVNNV 95 (263)
T ss_pred HHHcCCCCEEEECC
Confidence 124789999765
No 472
>PRK08306 dipicolinate synthase subunit A; Reviewed
Probab=81.89 E-value=10 Score=33.62 Aligned_cols=90 Identities=11% Similarity=0.090 Sum_probs=51.4
Q ss_pred CCCcEEEEcCcc-cHHHHHHHHHCCCceEEEEECChHHHHHHHHhcCccccccCCCCcEEEEE-ccccccccCCCeeEEE
Q 035593 77 PPGPIGILGFGA-GSAARLILDLYPEAVIHGWELDPSVIKVAREFFALEKLEKSYPDRLFVYV-GNALKASLKDGFSGIL 154 (269)
Q Consensus 77 ~~~~VL~iG~G~-G~~~~~l~~~~p~~~v~~vEidp~~~~~a~~~~~~~~~~~~~~~rv~~~~-~D~~~~~~~~~yD~I~ 154 (269)
.+++|+.||.|. |......++. -+++|++++.+++-.+.++.. +. +.+. .+.. ..-..+|+||
T Consensus 151 ~g~kvlViG~G~iG~~~a~~L~~-~Ga~V~v~~r~~~~~~~~~~~-G~-----------~~~~~~~l~--~~l~~aDiVI 215 (296)
T PRK08306 151 HGSNVLVLGFGRTGMTLARTLKA-LGANVTVGARKSAHLARITEM-GL-----------SPFHLSELA--EEVGKIDIIF 215 (296)
T ss_pred CCCEEEEECCcHHHHHHHHHHHH-CCCEEEEEECCHHHHHHHHHc-CC-----------eeecHHHHH--HHhCCCCEEE
Confidence 578999999984 3333333333 367999999998876665542 21 1111 1111 2224699999
Q ss_pred EcCCCCCCCCCCCCcHHHHHHHHhhccCCcEEEEEecC
Q 035593 155 VDLFSKGSLLSELEDPNTWEKLRQCLRKGGRIMVNVGG 192 (269)
Q Consensus 155 ~d~~~~~~~~~~l~~~e~~~~~~~~L~pgG~l~~~~~~ 192 (269)
... +..+ .-+.+.+.++++++ ++++..
T Consensus 216 ~t~------p~~~----i~~~~l~~~~~g~v-IIDla~ 242 (296)
T PRK08306 216 NTI------PALV----LTKEVLSKMPPEAL-IIDLAS 242 (296)
T ss_pred ECC------Chhh----hhHHHHHcCCCCcE-EEEEcc
Confidence 742 2222 22445567888654 556544
No 473
>PRK08251 short chain dehydrogenase; Provisional
Probab=81.46 E-value=19 Score=30.22 Aligned_cols=74 Identities=8% Similarity=-0.026 Sum_probs=47.4
Q ss_pred CcEEEEcCcccHHHHHHHHHC--CCceEEEEECChHHHHHHHHhcCccccccCCCCcEEEEEccccccc-----------
Q 035593 79 GPIGILGFGAGSAARLILDLY--PEAVIHGWELDPSVIKVAREFFALEKLEKSYPDRLFVYVGNALKAS----------- 145 (269)
Q Consensus 79 ~~VL~iG~G~G~~~~~l~~~~--p~~~v~~vEidp~~~~~a~~~~~~~~~~~~~~~rv~~~~~D~~~~~----------- 145 (269)
+++|+.|+ +|.++..+++++ .+.+|..++.+++..+.....+.... ...++.++..|..+..
T Consensus 3 k~vlItGa-s~giG~~la~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~----~~~~~~~~~~D~~~~~~~~~~~~~~~~ 77 (248)
T PRK08251 3 QKILITGA-SSGLGAGMAREFAAKGRDLALCARRTDRLEELKAELLARY----PGIKVAVAALDVNDHDQVFEVFAEFRD 77 (248)
T ss_pred CEEEEECC-CCHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhhC----CCceEEEEEcCCCCHHHHHHHHHHHHH
Confidence 46787775 566666666544 25799999999877655444332110 1346888889987641
Q ss_pred cCCCeeEEEEcC
Q 035593 146 LKDGFSGILVDL 157 (269)
Q Consensus 146 ~~~~yD~I~~d~ 157 (269)
.-++.|.|+..+
T Consensus 78 ~~~~id~vi~~a 89 (248)
T PRK08251 78 ELGGLDRVIVNA 89 (248)
T ss_pred HcCCCCEEEECC
Confidence 124689998765
No 474
>TIGR01963 PHB_DH 3-hydroxybutyrate dehydrogenase. This model represents a subfamily of the short chain dehydrogenases. Characterized members so far as 3-hydroxybutyrate dehydrogenases and are found in species that accumulate ester polmers called polyhydroxyalkanoic acids (PHAs) under certain conditions. Several members of the family are from species not known to accumulate PHAs, including Oceanobacillus iheyensis and Bacillus subtilis. However, polymer formation is not required for there be a role for 3-hydroxybutyrate dehydrogenase; it may be members of this family have the same function in those species.
Probab=81.39 E-value=18 Score=30.43 Aligned_cols=73 Identities=12% Similarity=0.008 Sum_probs=47.2
Q ss_pred CcEEEEcCcccHHHHHHHHHC--CCceEEEEECChHHHHHHHHhcCccccccCCCCcEEEEEccccccc-----------
Q 035593 79 GPIGILGFGAGSAARLILDLY--PEAVIHGWELDPSVIKVAREFFALEKLEKSYPDRLFVYVGNALKAS----------- 145 (269)
Q Consensus 79 ~~VL~iG~G~G~~~~~l~~~~--p~~~v~~vEidp~~~~~a~~~~~~~~~~~~~~~rv~~~~~D~~~~~----------- 145 (269)
+++|+.| |+|.++..+.+.+ .+.+|.+++.+++-.+......... ..++.++..|..+..
T Consensus 2 ~~vlItG-a~g~lG~~l~~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~------~~~~~~~~~D~~~~~~~~~~~~~~~~ 74 (255)
T TIGR01963 2 KTALVTG-AASGIGLAIALALAAAGANVVVNDLGEAGAEAAAKVATDA------GGSVIYLVADVTKEDEIADMIAAAAA 74 (255)
T ss_pred CEEEEcC-CcchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhc------CCceEEEECCCCCHHHHHHHHHHHHH
Confidence 4677777 4566666666543 3679999999987665554433211 246888888887641
Q ss_pred cCCCeeEEEEcCC
Q 035593 146 LKDGFSGILVDLF 158 (269)
Q Consensus 146 ~~~~yD~I~~d~~ 158 (269)
..+..|+|+..+.
T Consensus 75 ~~~~~d~vi~~a~ 87 (255)
T TIGR01963 75 EFGGLDILVNNAG 87 (255)
T ss_pred hcCCCCEEEECCC
Confidence 1245899987654
No 475
>PRK10083 putative oxidoreductase; Provisional
Probab=81.26 E-value=13 Score=32.90 Aligned_cols=97 Identities=14% Similarity=0.000 Sum_probs=54.3
Q ss_pred CCCCCcEEEEcCc-ccHHHHHHHHHCCCc-eEEEEECChHHHHHHHHhcCccccccCCCCcEEEEEcccccc-c-cCCCe
Q 035593 75 ILPPGPIGILGFG-AGSAARLILDLYPEA-VIHGWELDPSVIKVAREFFALEKLEKSYPDRLFVYVGNALKA-S-LKDGF 150 (269)
Q Consensus 75 l~~~~~VL~iG~G-~G~~~~~l~~~~p~~-~v~~vEidp~~~~~a~~~~~~~~~~~~~~~rv~~~~~D~~~~-~-~~~~y 150 (269)
+.+..+||..|+| -|..+..+++..-+. .+.+++.+++-.+++++. +... -+.....+..+. . ....+
T Consensus 158 ~~~g~~vlI~g~g~vG~~~~~~a~~~~G~~~v~~~~~~~~~~~~~~~~-Ga~~-------~i~~~~~~~~~~~~~~g~~~ 229 (339)
T PRK10083 158 PTEQDVALIYGAGPVGLTIVQVLKGVYNVKAVIVADRIDERLALAKES-GADW-------VINNAQEPLGEALEEKGIKP 229 (339)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHh-CCcE-------EecCccccHHHHHhcCCCCC
Confidence 4467899999954 222333444432244 688899999999888764 3211 011111111111 1 11234
Q ss_pred eEEEEcCCCCCCCCCCCCcHHHHHHHHhhccCCcEEEEE
Q 035593 151 SGILVDLFSKGSLLSELEDPNTWEKLRQCLRKGGRIMVN 189 (269)
Q Consensus 151 D~I~~d~~~~~~~~~~l~~~e~~~~~~~~L~pgG~l~~~ 189 (269)
|+|+ |... ....+..+.+.|+++|.++.-
T Consensus 230 d~vi-d~~g---------~~~~~~~~~~~l~~~G~~v~~ 258 (339)
T PRK10083 230 TLII-DAAC---------HPSILEEAVTLASPAARIVLM 258 (339)
T ss_pred CEEE-ECCC---------CHHHHHHHHHHhhcCCEEEEE
Confidence 5665 4332 135678888999999998764
No 476
>PRK06940 short chain dehydrogenase; Provisional
Probab=81.24 E-value=16 Score=31.67 Aligned_cols=72 Identities=6% Similarity=-0.081 Sum_probs=45.1
Q ss_pred cEEEEcCcccHHHHHHHHHCC-CceEEEEECChHHHHHHHHhcCccccccCCCCcEEEEEcccccc-------c---cCC
Q 035593 80 PIGILGFGAGSAARLILDLYP-EAVIHGWELDPSVIKVAREFFALEKLEKSYPDRLFVYVGNALKA-------S---LKD 148 (269)
Q Consensus 80 ~VL~iG~G~G~~~~~l~~~~p-~~~v~~vEidp~~~~~a~~~~~~~~~~~~~~~rv~~~~~D~~~~-------~---~~~ 148 (269)
++..|+++ |.++..+++.+. +.+|+.++.+++-++...+.+... ..++.++..|..+. . ..+
T Consensus 3 k~~lItGa-~gIG~~la~~l~~G~~Vv~~~r~~~~~~~~~~~l~~~------~~~~~~~~~Dv~d~~~i~~~~~~~~~~g 75 (275)
T PRK06940 3 EVVVVIGA-GGIGQAIARRVGAGKKVLLADYNEENLEAAAKTLREA------GFDVSTQEVDVSSRESVKALAATAQTLG 75 (275)
T ss_pred CEEEEECC-ChHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHHHHhc------CCeEEEEEeecCCHHHHHHHHHHHHhcC
Confidence 34444434 467777776653 679999999887655444333211 24678888888764 1 125
Q ss_pred CeeEEEEcCC
Q 035593 149 GFSGILVDLF 158 (269)
Q Consensus 149 ~yD~I~~d~~ 158 (269)
+.|+++..+-
T Consensus 76 ~id~li~nAG 85 (275)
T PRK06940 76 PVTGLVHTAG 85 (275)
T ss_pred CCCEEEECCC
Confidence 6899997653
No 477
>PRK14806 bifunctional cyclohexadienyl dehydrogenase/ 3-phosphoshikimate 1-carboxyvinyltransferase; Provisional
Probab=81.21 E-value=7 Score=39.20 Aligned_cols=94 Identities=15% Similarity=0.190 Sum_probs=55.5
Q ss_pred CcEEEEcCc--ccHHHHHHHHHCCCceEEEEECChHHHHHHHHhcCccccccCCCCcEEEEEccccccccCCCeeEEEEc
Q 035593 79 GPIGILGFG--AGSAARLILDLYPEAVIHGWELDPSVIKVAREFFALEKLEKSYPDRLFVYVGNALKASLKDGFSGILVD 156 (269)
Q Consensus 79 ~~VL~iG~G--~G~~~~~l~~~~p~~~v~~vEidp~~~~~a~~~~~~~~~~~~~~~rv~~~~~D~~~~~~~~~yD~I~~d 156 (269)
++|..||+| ++.++..+.+.....+|+++|.+++-++.+++. +... . ...|.. ..-...|+|++.
T Consensus 4 ~~I~IIG~G~mG~ala~~l~~~G~~~~V~~~d~~~~~~~~a~~~-g~~~---------~-~~~~~~--~~~~~aDvVila 70 (735)
T PRK14806 4 GRVVVIGLGLIGGSFAKALRERGLAREVVAVDRRAKSLELAVSL-GVID---------R-GEEDLA--EAVSGADVIVLA 70 (735)
T ss_pred cEEEEEeeCHHHHHHHHHHHhcCCCCEEEEEECChhHHHHHHHC-CCCC---------c-ccCCHH--HHhcCCCEEEEC
Confidence 579999988 344555555421124799999999887776653 2110 0 001111 112467999975
Q ss_pred CCCCCCCCCCCCcHHHHHHHHhhccCCcEEEEEecCC
Q 035593 157 LFSKGSLLSELEDPNTWEKLRQCLRKGGRIMVNVGGS 193 (269)
Q Consensus 157 ~~~~~~~~~~l~~~e~~~~~~~~L~pgG~l~~~~~~~ 193 (269)
.... ...+.++.+...++++ .+++++.+.
T Consensus 71 vp~~-------~~~~vl~~l~~~~~~~-~ii~d~~sv 99 (735)
T PRK14806 71 VPVL-------AMEKVLADLKPLLSEH-AIVTDVGST 99 (735)
T ss_pred CCHH-------HHHHHHHHHHHhcCCC-cEEEEcCCC
Confidence 4321 2467888888888764 566666543
No 478
>PF02737 3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain; InterPro: IPR006176 3-hydroxyacyl-CoA dehydrogenase (1.1.1.35 from EC) (HCDH) [] is an enzyme involved in fatty acid metabolism, it catalyzes the reduction of 3-hydroxyacyl-CoA to 3-oxoacyl-CoA. Most eukaryotic cells have 2 fatty-acid beta-oxidation systems, one located in mitochondria and the other in peroxisomes. In peroxisomes 3-hydroxyacyl-CoA dehydrogenase forms, with enoyl-CoA hydratase (ECH) and 3,2-trans-enoyl-CoA isomerase (ECI) a multifunctional enzyme where the N-terminal domain bears the hydratase/isomerase activities and the C-terminal domain the dehydrogenase activity. There are two mitochondrial enzymes: one which is monofunctional and the other which is, like its peroxisomal counterpart, multifunctional. In Escherichia coli (gene fadB) and Pseudomonas fragi (gene faoA) HCDH is part of a multifunctional enzyme which also contains an ECH/ECI domain as well as a 3-hydroxybutyryl-CoA epimerase domain []. There are two major regions of similarity in the sequences of proteins of the HCDH family, the first one located in the N-terminal, corresponds to the NAD-binding site, the second one is located in the centre of the sequence. This represents the C-terminal domain which is also found in lambda crystallin. Some proteins include two copies of this domain.; GO: 0003857 3-hydroxyacyl-CoA dehydrogenase activity, 0016491 oxidoreductase activity, 0006631 fatty acid metabolic process, 0055114 oxidation-reduction process; PDB: 3K6J_A 1ZCJ_A 2X58_A 1ZEJ_A 3HDH_B 2WTB_A 1WDL_B 2D3T_B 1WDK_A 1WDM_B ....
Probab=81.05 E-value=3.1 Score=34.07 Aligned_cols=102 Identities=12% Similarity=0.151 Sum_probs=57.8
Q ss_pred cEEEEcCccc--HHHHHHHHHCCCceEEEEECChHHHHHHHHhcCc--ccc---ccC-------CCCcEEEEEccccccc
Q 035593 80 PIGILGFGAG--SAARLILDLYPEAVIHGWELDPSVIKVAREFFAL--EKL---EKS-------YPDRLFVYVGNALKAS 145 (269)
Q Consensus 80 ~VL~iG~G~G--~~~~~l~~~~p~~~v~~vEidp~~~~~a~~~~~~--~~~---~~~-------~~~rv~~~~~D~~~~~ 145 (269)
+|.+||+|.= .++..++. .+.+|+.+|.|++.++.+++++.. ... +.. .-.++++ ..|..+
T Consensus 1 ~V~ViGaG~mG~~iA~~~a~--~G~~V~l~d~~~~~l~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~i~~-~~dl~~-- 75 (180)
T PF02737_consen 1 KVAVIGAGTMGRGIAALFAR--AGYEVTLYDRSPEALERARKRIERLLDRLVRKGRLSQEEADAALARISF-TTDLEE-- 75 (180)
T ss_dssp EEEEES-SHHHHHHHHHHHH--TTSEEEEE-SSHHHHHHHHHHHHHHHHHHHHTTTTTHHHHHHHHHTEEE-ESSGGG--
T ss_pred CEEEEcCCHHHHHHHHHHHh--CCCcEEEEECChHHHHhhhhHHHHHHhhhhhhccchhhhhhhhhhhccc-ccCHHH--
Confidence 4788998743 33333333 489999999999999988876531 100 000 0123442 233222
Q ss_pred cCCCeeEEEEcCCCCCCCCCCC-CcHHHHHHHHhhccCCcEEEEEecCC
Q 035593 146 LKDGFSGILVDLFSKGSLLSEL-EDPNTWEKLRQCLRKGGRIMVNVGGS 193 (269)
Q Consensus 146 ~~~~yD~I~~d~~~~~~~~~~l-~~~e~~~~~~~~L~pgG~l~~~~~~~ 193 (269)
-...|+|+=... ..+ ...++|+++.+.+.|+-+|+.|..+-
T Consensus 76 -~~~adlViEai~------E~l~~K~~~~~~l~~~~~~~~ilasnTSsl 117 (180)
T PF02737_consen 76 -AVDADLVIEAIP------EDLELKQELFAELDEICPPDTILASNTSSL 117 (180)
T ss_dssp -GCTESEEEE-S-------SSHHHHHHHHHHHHCCS-TTSEEEE--SSS
T ss_pred -Hhhhheehhhcc------ccHHHHHHHHHHHHHHhCCCceEEecCCCC
Confidence 237888884322 111 13589999999999999999998654
No 479
>PRK08324 short chain dehydrogenase; Validated
Probab=80.94 E-value=16 Score=36.42 Aligned_cols=73 Identities=14% Similarity=0.059 Sum_probs=47.0
Q ss_pred CCcEEEEcCcccHHHHHHHHHC--CCceEEEEECChHHHHHHHHhcCccccccCCCCcEEEEEcccccc-----------
Q 035593 78 PGPIGILGFGAGSAARLILDLY--PEAVIHGWELDPSVIKVAREFFALEKLEKSYPDRLFVYVGNALKA----------- 144 (269)
Q Consensus 78 ~~~VL~iG~G~G~~~~~l~~~~--p~~~v~~vEidp~~~~~a~~~~~~~~~~~~~~~rv~~~~~D~~~~----------- 144 (269)
.+.||+.|++ |.++..+.+.+ .+.+|++++.++.-.+.+.+.++. ..++.++..|..+.
T Consensus 422 gk~vLVTGas-ggIG~~la~~L~~~Ga~Vvl~~r~~~~~~~~~~~l~~-------~~~v~~v~~Dvtd~~~v~~~~~~~~ 493 (681)
T PRK08324 422 GKVALVTGAA-GGIGKATAKRLAAEGACVVLADLDEEAAEAAAAELGG-------PDRALGVACDVTDEAAVQAAFEEAA 493 (681)
T ss_pred CCEEEEecCC-CHHHHHHHHHHHHCcCEEEEEeCCHHHHHHHHHHHhc-------cCcEEEEEecCCCHHHHHHHHHHHH
Confidence 4678888864 34444444332 367999999999877666554431 13678888887653
Q ss_pred ccCCCeeEEEEcCC
Q 035593 145 SLKDGFSGILVDLF 158 (269)
Q Consensus 145 ~~~~~yD~I~~d~~ 158 (269)
...+..|+||..+.
T Consensus 494 ~~~g~iDvvI~~AG 507 (681)
T PRK08324 494 LAFGGVDIVVSNAG 507 (681)
T ss_pred HHcCCCCEEEECCC
Confidence 11346899997653
No 480
>PLN02688 pyrroline-5-carboxylate reductase
Probab=80.93 E-value=11 Score=32.56 Aligned_cols=86 Identities=17% Similarity=0.230 Sum_probs=51.2
Q ss_pred cEEEEcCc--ccHHHHHHHHHC--CCceEEEE-ECChHHHHHHHHhcCccccccCCCCcEEEEEccccccccCCCeeEEE
Q 035593 80 PIGILGFG--AGSAARLILDLY--PEAVIHGW-ELDPSVIKVAREFFALEKLEKSYPDRLFVYVGNALKASLKDGFSGIL 154 (269)
Q Consensus 80 ~VL~iG~G--~G~~~~~l~~~~--p~~~v~~v-Eidp~~~~~a~~~~~~~~~~~~~~~rv~~~~~D~~~~~~~~~yD~I~ 154 (269)
+|..||+| ++.+++.|++.. +..+|+++ +.+++..+.+.+. + +++ ..+..+. -...|+||
T Consensus 2 kI~~IG~G~mG~a~a~~L~~~g~~~~~~i~v~~~r~~~~~~~~~~~-g-----------~~~-~~~~~e~--~~~aDvVi 66 (266)
T PLN02688 2 RVGFIGAGKMAEAIARGLVASGVVPPSRISTADDSNPARRDVFQSL-G-----------VKT-AASNTEV--VKSSDVII 66 (266)
T ss_pred eEEEECCcHHHHHHHHHHHHCCCCCcceEEEEeCCCHHHHHHHHHc-C-----------CEE-eCChHHH--HhcCCEEE
Confidence 58899988 356666666531 22378888 9998876665432 2 221 1222211 23579999
Q ss_pred EcCCCCCCCCCCCCcHHHHHHHHhhccCCcEEE
Q 035593 155 VDLFSKGSLLSELEDPNTWEKLRQCLRKGGRIM 187 (269)
Q Consensus 155 ~d~~~~~~~~~~l~~~e~~~~~~~~L~pgG~l~ 187 (269)
+...+. ...+.+..+...++++.+++
T Consensus 67 l~v~~~-------~~~~vl~~l~~~~~~~~~iI 92 (266)
T PLN02688 67 LAVKPQ-------VVKDVLTELRPLLSKDKLLV 92 (266)
T ss_pred EEECcH-------HHHHHHHHHHhhcCCCCEEE
Confidence 866321 14577777777777766554
No 481
>PRK06482 short chain dehydrogenase; Provisional
Probab=80.88 E-value=24 Score=30.25 Aligned_cols=69 Identities=12% Similarity=0.096 Sum_probs=45.9
Q ss_pred CcEEEEcCcccHHHHHHHHHC--CCceEEEEECChHHHHHHHHhcCccccccCCCCcEEEEEccccccc-----------
Q 035593 79 GPIGILGFGAGSAARLILDLY--PEAVIHGWELDPSVIKVAREFFALEKLEKSYPDRLFVYVGNALKAS----------- 145 (269)
Q Consensus 79 ~~VL~iG~G~G~~~~~l~~~~--p~~~v~~vEidp~~~~~a~~~~~~~~~~~~~~~rv~~~~~D~~~~~----------- 145 (269)
++||+.|+ +|.+++.+.+++ .+.+|.++..+++.++..++.. ..++.++..|..+..
T Consensus 3 k~vlVtGa-sg~IG~~la~~L~~~g~~v~~~~r~~~~~~~~~~~~---------~~~~~~~~~D~~~~~~~~~~~~~~~~ 72 (276)
T PRK06482 3 KTWFITGA-SSGFGRGMTERLLARGDRVAATVRRPDALDDLKARY---------GDRLWVLQLDVTDSAAVRAVVDRAFA 72 (276)
T ss_pred CEEEEecC-CCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHhc---------cCceEEEEccCCCHHHHHHHHHHHHH
Confidence 46888876 455555555443 3679999999987766554432 136888889987641
Q ss_pred cCCCeeEEEEcC
Q 035593 146 LKDGFSGILVDL 157 (269)
Q Consensus 146 ~~~~yD~I~~d~ 157 (269)
...+.|+|+..+
T Consensus 73 ~~~~id~vi~~a 84 (276)
T PRK06482 73 ALGRIDVVVSNA 84 (276)
T ss_pred HcCCCCEEEECC
Confidence 124679999765
No 482
>cd01065 NAD_bind_Shikimate_DH NAD(P) binding domain of Shikimate dehydrogenase. Shikimate dehydrogenase (DH) is an amino acid DH family member. Shikimate pathway links metabolism of carbohydrates to de novo biosynthesis of aromatic amino acids, quinones and folate. It is essential in plants, bacteria, and fungi but absent in mammals, thus making enzymes involved in this pathway ideal targets for broad spectrum antibiotics and herbicides. Shikimate DH catalyzes the reduction of 3-hydroshikimate to shikimate using the cofactor NADH. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann
Probab=80.67 E-value=24 Score=27.33 Aligned_cols=73 Identities=16% Similarity=-0.019 Sum_probs=41.0
Q ss_pred CCCcEEEEcCcc--cHHHHHHHHHCCCceEEEEECChHHHHHHHHhcCccccccCCCCcEEEEEccccccccCCCeeEEE
Q 035593 77 PPGPIGILGFGA--GSAARLILDLYPEAVIHGWELDPSVIKVAREFFALEKLEKSYPDRLFVYVGNALKASLKDGFSGIL 154 (269)
Q Consensus 77 ~~~~VL~iG~G~--G~~~~~l~~~~p~~~v~~vEidp~~~~~a~~~~~~~~~~~~~~~rv~~~~~D~~~~~~~~~yD~I~ 154 (269)
++++|+.+|+|. ..++..+.+ ....+|++++.+++-.+...+.++.. .+.....|.. ..-+..|+|+
T Consensus 18 ~~~~i~iiG~G~~g~~~a~~l~~-~g~~~v~v~~r~~~~~~~~~~~~~~~--------~~~~~~~~~~--~~~~~~Dvvi 86 (155)
T cd01065 18 KGKKVLILGAGGAARAVAYALAE-LGAAKIVIVNRTLEKAKALAERFGEL--------GIAIAYLDLE--ELLAEADLII 86 (155)
T ss_pred CCCEEEEECCcHHHHHHHHHHHH-CCCCEEEEEcCCHHHHHHHHHHHhhc--------ccceeecchh--hccccCCEEE
Confidence 468999999862 233333333 22368999999988766554444310 0111112221 1246789999
Q ss_pred EcCCCC
Q 035593 155 VDLFSK 160 (269)
Q Consensus 155 ~d~~~~ 160 (269)
+.....
T Consensus 87 ~~~~~~ 92 (155)
T cd01065 87 NTTPVG 92 (155)
T ss_pred eCcCCC
Confidence 876544
No 483
>PRK07677 short chain dehydrogenase; Provisional
Probab=80.57 E-value=18 Score=30.55 Aligned_cols=73 Identities=8% Similarity=0.016 Sum_probs=46.2
Q ss_pred CcEEEEcCcccHHHHHHHHHC--CCceEEEEECChHHHHHHHHhcCccccccCCCCcEEEEEcccccc-----------c
Q 035593 79 GPIGILGFGAGSAARLILDLY--PEAVIHGWELDPSVIKVAREFFALEKLEKSYPDRLFVYVGNALKA-----------S 145 (269)
Q Consensus 79 ~~VL~iG~G~G~~~~~l~~~~--p~~~v~~vEidp~~~~~a~~~~~~~~~~~~~~~rv~~~~~D~~~~-----------~ 145 (269)
+++|+.|+++| ++..+.+.+ .+.+|.+++.++...+...+.+... ..++.++..|..+. .
T Consensus 2 k~~lItG~s~g-iG~~ia~~l~~~G~~Vi~~~r~~~~~~~~~~~~~~~------~~~~~~~~~D~~~~~~~~~~~~~~~~ 74 (252)
T PRK07677 2 KVVIITGGSSG-MGKAMAKRFAEEGANVVITGRTKEKLEEAKLEIEQF------PGQVLTVQMDVRNPEDVQKMVEQIDE 74 (252)
T ss_pred CEEEEeCCCCh-HHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhc------CCcEEEEEecCCCHHHHHHHHHHHHH
Confidence 57888887655 444333322 3679999999987665555443211 24688888887653 1
Q ss_pred cCCCeeEEEEcCC
Q 035593 146 LKDGFSGILVDLF 158 (269)
Q Consensus 146 ~~~~yD~I~~d~~ 158 (269)
.-++.|.|+..+.
T Consensus 75 ~~~~id~lI~~ag 87 (252)
T PRK07677 75 KFGRIDALINNAA 87 (252)
T ss_pred HhCCccEEEECCC
Confidence 1256899997653
No 484
>PF02826 2-Hacid_dh_C: D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain; InterPro: IPR006140 A number of NAD-dependent 2-hydroxyacid dehydrogenases which seem to be specific for the D-isomer of their substrate have been shown to be functionally and structurally related. All contain a glycine-rich region located in the central section of these enzymes, this region corresponds to the NAD-binding domain. The catalytic domain is described in IPR006139 from INTERPRO ; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0048037 cofactor binding, 0055114 oxidation-reduction process; PDB: 3JTM_A 3NAQ_B 3N7U_J 3KB6_B 3GG9_A 1QP8_B 2CUK_C 2W2L_D 2W2K_A 1WWK_A ....
Probab=80.56 E-value=9.8 Score=30.89 Aligned_cols=94 Identities=19% Similarity=0.238 Sum_probs=52.5
Q ss_pred CCCcEEEEcCc-ccHHHHHHHHHCCCceEEEEECChHHHHHHHHhcCccccccCCCCcEEEEEccccccccCCCeeEEEE
Q 035593 77 PPGPIGILGFG-AGSAARLILDLYPEAVIHGWELDPSVIKVAREFFALEKLEKSYPDRLFVYVGNALKASLKDGFSGILV 155 (269)
Q Consensus 77 ~~~~VL~iG~G-~G~~~~~l~~~~p~~~v~~vEidp~~~~~a~~~~~~~~~~~~~~~rv~~~~~D~~~~~~~~~yD~I~~ 155 (269)
..++|.+||+| .|......++.+ +++|.+++.++.....+... + ++ ..+..++ -.+.|+|++
T Consensus 35 ~g~tvgIiG~G~IG~~vA~~l~~f-G~~V~~~d~~~~~~~~~~~~-~-----------~~--~~~l~el--l~~aDiv~~ 97 (178)
T PF02826_consen 35 RGKTVGIIGYGRIGRAVARRLKAF-GMRVIGYDRSPKPEEGADEF-G-----------VE--YVSLDEL--LAQADIVSL 97 (178)
T ss_dssp TTSEEEEESTSHHHHHHHHHHHHT-T-EEEEEESSCHHHHHHHHT-T-----------EE--ESSHHHH--HHH-SEEEE
T ss_pred CCCEEEEEEEcCCcCeEeeeeecC-CceeEEecccCChhhhcccc-c-----------ce--eeehhhh--cchhhhhhh
Confidence 47899999886 333333333333 78999999999866522221 1 11 1122222 246899998
Q ss_pred cCCCCCCCCCCCCcHHHHHHHHhhccCCcEEEEEecCC
Q 035593 156 DLFSKGSLLSELEDPNTWEKLRQCLRKGGRIMVNVGGS 193 (269)
Q Consensus 156 d~~~~~~~~~~l~~~e~~~~~~~~L~pgG~l~~~~~~~ 193 (269)
-+.... ...++...++|+ .+|+ |.+++|+...
T Consensus 98 ~~plt~-~T~~li~~~~l~----~mk~-ga~lvN~aRG 129 (178)
T PF02826_consen 98 HLPLTP-ETRGLINAEFLA----KMKP-GAVLVNVARG 129 (178)
T ss_dssp -SSSST-TTTTSBSHHHHH----TSTT-TEEEEESSSG
T ss_pred hhcccc-ccceeeeeeeee----cccc-ceEEEeccch
Confidence 765432 223555666665 4665 5667898643
No 485
>cd08291 ETR_like_1 2-enoyl thioester reductase (ETR) like proteins, child 1. 2-enoyl thioester reductase (ETR) like proteins. ETR catalyzes the NADPH-dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the 2-enoyl thioester reductase (ETR) like proteins. ETR catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordin
Probab=80.52 E-value=22 Score=31.42 Aligned_cols=91 Identities=9% Similarity=0.009 Sum_probs=54.2
Q ss_pred CCCcEEEEcCccc---HHHHHHHHHCCCceEEEEECChHHHHHHHHhcCccccccCCCCcEEEEEc---cccc----ccc
Q 035593 77 PPGPIGILGFGAG---SAARLILDLYPEAVIHGWELDPSVIKVAREFFALEKLEKSYPDRLFVYVG---NALK----ASL 146 (269)
Q Consensus 77 ~~~~VL~iG~G~G---~~~~~l~~~~p~~~v~~vEidp~~~~~a~~~~~~~~~~~~~~~rv~~~~~---D~~~----~~~ 146 (269)
++.++|.+..|+| ..+..+++. .+++|++++.+++-.+.+++ ++.. .++.. +..+ ...
T Consensus 142 ~~~~vlv~~~g~g~vG~~a~q~a~~-~G~~vi~~~~~~~~~~~~~~-~g~~----------~~i~~~~~~~~~~v~~~~~ 209 (324)
T cd08291 142 EGAKAVVHTAAASALGRMLVRLCKA-DGIKVINIVRRKEQVDLLKK-IGAE----------YVLNSSDPDFLEDLKELIA 209 (324)
T ss_pred CCCcEEEEccCccHHHHHHHHHHHH-cCCEEEEEeCCHHHHHHHHH-cCCc----------EEEECCCccHHHHHHHHhC
Confidence 4667888733334 444555554 47799999999998888876 3421 12211 2111 123
Q ss_pred CCCeeEEEEcCCCCCCCCCCCCcHHHHHHHHhhccCCcEEEEEe
Q 035593 147 KDGFSGILVDLFSKGSLLSELEDPNTWEKLRQCLRKGGRIMVNV 190 (269)
Q Consensus 147 ~~~yD~I~~d~~~~~~~~~~l~~~e~~~~~~~~L~pgG~l~~~~ 190 (269)
...+|+|+ |.... .......+.|+++|.++...
T Consensus 210 ~~~~d~vi-d~~g~----------~~~~~~~~~l~~~G~~v~~g 242 (324)
T cd08291 210 KLNATIFF-DAVGG----------GLTGQILLAMPYGSTLYVYG 242 (324)
T ss_pred CCCCcEEE-ECCCc----------HHHHHHHHhhCCCCEEEEEE
Confidence 34689887 43221 23355677889999987754
No 486
>cd01487 E1_ThiF_like E1_ThiF_like. Member of superfamily of activating enzymes (E1) of the ubiquitin-like proteins. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown.
Probab=80.46 E-value=11 Score=30.63 Aligned_cols=31 Identities=29% Similarity=0.366 Sum_probs=20.9
Q ss_pred cEEEEcCcc-cH-HHHHHHHHCCCceEEEEECCh
Q 035593 80 PIGILGFGA-GS-AARLILDLYPEAVIHGWELDP 111 (269)
Q Consensus 80 ~VL~iG~G~-G~-~~~~l~~~~p~~~v~~vEidp 111 (269)
+|+.+|||+ |+ ++..|.+ ..-.+++.+|.|.
T Consensus 1 ~VlViG~GglGs~ia~~La~-~Gvg~i~lvD~D~ 33 (174)
T cd01487 1 KVGIAGAGGLGSNIAVLLAR-SGVGNLKLVDFDV 33 (174)
T ss_pred CEEEECcCHHHHHHHHHHHH-cCCCeEEEEeCCE
Confidence 589999983 44 4444444 3334799999885
No 487
>PLN02662 cinnamyl-alcohol dehydrogenase family protein
Probab=80.27 E-value=4.8 Score=35.49 Aligned_cols=76 Identities=22% Similarity=0.327 Sum_probs=45.6
Q ss_pred CCcEEEEcCcccHHHHHHHHHC--CCceEEEEECChHHHHHHHHhcCccccccCCCCcEEEEEcccccc----ccCCCee
Q 035593 78 PGPIGILGFGAGSAARLILDLY--PEAVIHGWELDPSVIKVAREFFALEKLEKSYPDRLFVYVGNALKA----SLKDGFS 151 (269)
Q Consensus 78 ~~~VL~iG~G~G~~~~~l~~~~--p~~~v~~vEidp~~~~~a~~~~~~~~~~~~~~~rv~~~~~D~~~~----~~~~~yD 151 (269)
.++||+.|+ +|.++..+.++. .+.+|.++..++.-............ ..++++++.+|..+. ..-+..|
T Consensus 4 ~~~ilVtGa-tGfIG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~----~~~~~~~~~~Dl~~~~~~~~~~~~~d 78 (322)
T PLN02662 4 GKVVCVTGA-SGYIASWLVKLLLQRGYTVKATVRDPNDPKKTEHLLALDG----AKERLHLFKANLLEEGSFDSVVDGCE 78 (322)
T ss_pred CCEEEEECC-hHHHHHHHHHHHHHCCCEEEEEEcCCCchhhHHHHHhccC----CCCceEEEeccccCcchHHHHHcCCC
Confidence 467888885 566666666543 36688888877643322221111110 125789999998864 1224589
Q ss_pred EEEEcCC
Q 035593 152 GILVDLF 158 (269)
Q Consensus 152 ~I~~d~~ 158 (269)
.||..+.
T Consensus 79 ~Vih~A~ 85 (322)
T PLN02662 79 GVFHTAS 85 (322)
T ss_pred EEEEeCC
Confidence 9987653
No 488
>PRK08594 enoyl-(acyl carrier protein) reductase; Provisional
Probab=80.24 E-value=26 Score=29.90 Aligned_cols=73 Identities=8% Similarity=-0.036 Sum_probs=45.1
Q ss_pred CCCcEEEEcCcc-cHHHHHHHHHC--CCceEEEEECC---hHHHHHHHHhcCccccccCCCCcEEEEEcccccc------
Q 035593 77 PPGPIGILGFGA-GSAARLILDLY--PEAVIHGWELD---PSVIKVAREFFALEKLEKSYPDRLFVYVGNALKA------ 144 (269)
Q Consensus 77 ~~~~VL~iG~G~-G~~~~~l~~~~--p~~~v~~vEid---p~~~~~a~~~~~~~~~~~~~~~rv~~~~~D~~~~------ 144 (269)
..+.+|+.|+++ +.++..+++.+ .+.+|..+..+ ++.++...+... ..++..+..|..+.
T Consensus 6 ~~k~~lItGa~~s~GIG~aia~~la~~G~~v~~~~r~~~~~~~~~~~~~~~~--------~~~~~~~~~Dv~d~~~v~~~ 77 (257)
T PRK08594 6 EGKTYVVMGVANKRSIAWGIARSLHNAGAKLVFTYAGERLEKEVRELADTLE--------GQESLLLPCDVTSDEEITAC 77 (257)
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHHHCCCEEEEecCcccchHHHHHHHHHcC--------CCceEEEecCCCCHHHHHHH
Confidence 467899999873 56666655543 46788888654 233333333221 23677888888764
Q ss_pred -----ccCCCeeEEEEcC
Q 035593 145 -----SLKDGFSGILVDL 157 (269)
Q Consensus 145 -----~~~~~yD~I~~d~ 157 (269)
..-++.|+++.++
T Consensus 78 ~~~~~~~~g~ld~lv~na 95 (257)
T PRK08594 78 FETIKEEVGVIHGVAHCI 95 (257)
T ss_pred HHHHHHhCCCccEEEECc
Confidence 1236789998765
No 489
>cd08279 Zn_ADH_class_III Class III alcohol dehydrogenase. Glutathione-dependent formaldehyde dehydrogenases (FDHs, Class III ADH) are members of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. Class III ADH are also known as glutathione-dependent formaldehyde dehydrogenase (FDH), which convert aldehydes to corresponding carboxylic acid and alcohol. ADH is a me
Probab=80.22 E-value=13 Score=33.65 Aligned_cols=93 Identities=20% Similarity=0.242 Sum_probs=58.0
Q ss_pred CCCCCcEEEEcCc-ccHHHHHHHHHCCCc-eEEEEECChHHHHHHHHhcCccccccCCCCcEEEEEc---cccc----cc
Q 035593 75 ILPPGPIGILGFG-AGSAARLILDLYPEA-VIHGWELDPSVIKVAREFFALEKLEKSYPDRLFVYVG---NALK----AS 145 (269)
Q Consensus 75 l~~~~~VL~iG~G-~G~~~~~l~~~~p~~-~v~~vEidp~~~~~a~~~~~~~~~~~~~~~rv~~~~~---D~~~----~~ 145 (269)
+.+..+||+.|+| .|..+..+++.. +. +|+++..++.-.+.+++ ++.. .++.. +... ..
T Consensus 180 ~~~g~~vLI~g~g~vG~a~i~lak~~-G~~~Vi~~~~~~~~~~~~~~-~g~~----------~vv~~~~~~~~~~l~~~~ 247 (363)
T cd08279 180 VRPGDTVAVIGCGGVGLNAIQGARIA-GASRIIAVDPVPEKLELARR-FGAT----------HTVNASEDDAVEAVRDLT 247 (363)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHc-CCCcEEEEcCCHHHHHHHHH-hCCe----------EEeCCCCccHHHHHHHHc
Confidence 4567899999764 345555666654 55 49999999988888754 4421 11111 1111 12
Q ss_pred cCCCeeEEEEcCCCCCCCCCCCCcHHHHHHHHhhccCCcEEEEE
Q 035593 146 LKDGFSGILVDLFSKGSLLSELEDPNTWEKLRQCLRKGGRIMVN 189 (269)
Q Consensus 146 ~~~~yD~I~~d~~~~~~~~~~l~~~e~~~~~~~~L~pgG~l~~~ 189 (269)
..+.+|+|+- ... ..+.+..+.+.|+++|.++.-
T Consensus 248 ~~~~vd~vld-~~~---------~~~~~~~~~~~l~~~G~~v~~ 281 (363)
T cd08279 248 DGRGADYAFE-AVG---------RAATIRQALAMTRKGGTAVVV 281 (363)
T ss_pred CCCCCCEEEE-cCC---------ChHHHHHHHHHhhcCCeEEEE
Confidence 2456998873 221 135678888999999988754
No 490
>PLN02989 cinnamyl-alcohol dehydrogenase family protein
Probab=80.21 E-value=5.1 Score=35.47 Aligned_cols=76 Identities=21% Similarity=0.254 Sum_probs=46.1
Q ss_pred CCcEEEEcCcccHHHHHHHHHC--CCceEEEEECChHHHHHHHHhcCccccccCCCCcEEEEEcccccc----ccCCCee
Q 035593 78 PGPIGILGFGAGSAARLILDLY--PEAVIHGWELDPSVIKVAREFFALEKLEKSYPDRLFVYVGNALKA----SLKDGFS 151 (269)
Q Consensus 78 ~~~VL~iG~G~G~~~~~l~~~~--p~~~v~~vEidp~~~~~a~~~~~~~~~~~~~~~rv~~~~~D~~~~----~~~~~yD 151 (269)
.++||+.| |+|.++..+.+++ .+.+|.++..++...+.......... ..++++++.+|..+. ..-+..|
T Consensus 5 ~k~vlVtG-~~G~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~----~~~~~~~~~~D~~d~~~~~~~~~~~d 79 (325)
T PLN02989 5 GKVVCVTG-ASGYIASWIVKLLLFRGYTINATVRDPKDRKKTDHLLALDG----AKERLKLFKADLLDEGSFELAIDGCE 79 (325)
T ss_pred CCEEEEEC-CchHHHHHHHHHHHHCCCEEEEEEcCCcchhhHHHHHhccC----CCCceEEEeCCCCCchHHHHHHcCCC
Confidence 56888888 4666666666543 36788887777654332222211111 124789999999875 1223579
Q ss_pred EEEEcCC
Q 035593 152 GILVDLF 158 (269)
Q Consensus 152 ~I~~d~~ 158 (269)
+|+..+.
T Consensus 80 ~vih~A~ 86 (325)
T PLN02989 80 TVFHTAS 86 (325)
T ss_pred EEEEeCC
Confidence 9987653
No 491
>PRK07531 bifunctional 3-hydroxyacyl-CoA dehydrogenase/thioesterase; Validated
Probab=79.99 E-value=12 Score=35.79 Aligned_cols=104 Identities=15% Similarity=0.096 Sum_probs=56.5
Q ss_pred CcEEEEcCc--ccHHHHHHHHHCCCceEEEEECChHHHHHHHHhc-------C-ccccccCCCCcEEEEEccccccccCC
Q 035593 79 GPIGILGFG--AGSAARLILDLYPEAVIHGWELDPSVIKVAREFF-------A-LEKLEKSYPDRLFVYVGNALKASLKD 148 (269)
Q Consensus 79 ~~VL~iG~G--~G~~~~~l~~~~p~~~v~~vEidp~~~~~a~~~~-------~-~~~~~~~~~~rv~~~~~D~~~~~~~~ 148 (269)
.+|-.||+| ++.++..+++ .+.+|++.|++++.++..++.. + +.........++++. .|.. ..-.
T Consensus 5 ~kIavIG~G~MG~~iA~~la~--~G~~V~v~D~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~g~i~~~-~~~~--ea~~ 79 (495)
T PRK07531 5 MKAACIGGGVIGGGWAARFLL--AGIDVAVFDPHPEAERIIGEVLANAERAYAMLTDAPLPPEGRLTFC-ASLA--EAVA 79 (495)
T ss_pred CEEEEECcCHHHHHHHHHHHh--CCCeEEEEeCCHHHHHHHHHHHHHHHHHHhhhccchhhhhhceEee-CCHH--HHhc
Confidence 479999998 4555666655 4779999999999876543221 0 000000000122221 1211 1234
Q ss_pred CeeEEEEcCCCCCCCCCCCCcHHHHHHHHhhccCCcEEEEEecC
Q 035593 149 GFSGILVDLFSKGSLLSELEDPNTWEKLRQCLRKGGRIMVNVGG 192 (269)
Q Consensus 149 ~yD~I~~d~~~~~~~~~~l~~~e~~~~~~~~L~pgG~l~~~~~~ 192 (269)
..|+|+..+.... -...++|+.+...++++-++..+..+
T Consensus 80 ~aD~Vieavpe~~-----~vk~~l~~~l~~~~~~~~iI~SsTsg 118 (495)
T PRK07531 80 GADWIQESVPERL-----DLKRRVLAEIDAAARPDALIGSSTSG 118 (495)
T ss_pred CCCEEEEcCcCCH-----HHHHHHHHHHHhhCCCCcEEEEcCCC
Confidence 6799987544321 01245777777777777665555543
No 492
>PRK09072 short chain dehydrogenase; Provisional
Probab=79.94 E-value=25 Score=29.88 Aligned_cols=74 Identities=8% Similarity=0.036 Sum_probs=47.9
Q ss_pred CCCcEEEEcCcccHHHHHHHHHC--CCceEEEEECChHHHHHHHHhcCccccccCCCCcEEEEEccccccc---------
Q 035593 77 PPGPIGILGFGAGSAARLILDLY--PEAVIHGWELDPSVIKVAREFFALEKLEKSYPDRLFVYVGNALKAS--------- 145 (269)
Q Consensus 77 ~~~~VL~iG~G~G~~~~~l~~~~--p~~~v~~vEidp~~~~~a~~~~~~~~~~~~~~~rv~~~~~D~~~~~--------- 145 (269)
+.+++|+.|+++ .++..+.+++ .+.+|++++.+++-++...+.... ..++.++..|..+..
T Consensus 4 ~~~~vlItG~s~-~iG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~-------~~~~~~~~~D~~d~~~~~~~~~~~ 75 (263)
T PRK09072 4 KDKRVLLTGASG-GIGQALAEALAAAGARLLLVGRNAEKLEALAARLPY-------PGRHRWVVADLTSEAGREAVLARA 75 (263)
T ss_pred CCCEEEEECCCc-hHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHhc-------CCceEEEEccCCCHHHHHHHHHHH
Confidence 356788888654 4444444332 378999999998776655544321 247888888887641
Q ss_pred -cCCCeeEEEEcCC
Q 035593 146 -LKDGFSGILVDLF 158 (269)
Q Consensus 146 -~~~~yD~I~~d~~ 158 (269)
..+..|.|+..+.
T Consensus 76 ~~~~~id~lv~~ag 89 (263)
T PRK09072 76 REMGGINVLINNAG 89 (263)
T ss_pred HhcCCCCEEEECCC
Confidence 1256899997653
No 493
>PRK08339 short chain dehydrogenase; Provisional
Probab=79.92 E-value=24 Score=30.30 Aligned_cols=76 Identities=12% Similarity=-0.109 Sum_probs=47.7
Q ss_pred CCCcEEEEcCcccHHHHHHHHHC--CCceEEEEECChHHHHHHHHhcCccccccCCCCcEEEEEcccccc----------
Q 035593 77 PPGPIGILGFGAGSAARLILDLY--PEAVIHGWELDPSVIKVAREFFALEKLEKSYPDRLFVYVGNALKA---------- 144 (269)
Q Consensus 77 ~~~~VL~iG~G~G~~~~~l~~~~--p~~~v~~vEidp~~~~~a~~~~~~~~~~~~~~~rv~~~~~D~~~~---------- 144 (269)
..+.+|+.|+++| ++..+++.+ .+.+|..++.+++-++...+.+... ...++.++..|..+.
T Consensus 7 ~~k~~lItGas~g-IG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~-----~~~~~~~~~~Dv~~~~~i~~~~~~~ 80 (263)
T PRK08339 7 SGKLAFTTASSKG-IGFGVARVLARAGADVILLSRNEENLKKAREKIKSE-----SNVDVSYIVADLTKREDLERTVKEL 80 (263)
T ss_pred CCCEEEEeCCCCc-HHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhh-----cCCceEEEEecCCCHHHHHHHHHHH
Confidence 3567888887654 333333332 4789999999987666555443211 124688899998764
Q ss_pred ccCCCeeEEEEcCC
Q 035593 145 SLKDGFSGILVDLF 158 (269)
Q Consensus 145 ~~~~~yD~I~~d~~ 158 (269)
..-++.|+++.++-
T Consensus 81 ~~~g~iD~lv~nag 94 (263)
T PRK08339 81 KNIGEPDIFFFSTG 94 (263)
T ss_pred HhhCCCcEEEECCC
Confidence 11246899887653
No 494
>PRK10637 cysG siroheme synthase; Provisional
Probab=79.88 E-value=10 Score=35.95 Aligned_cols=90 Identities=17% Similarity=0.064 Sum_probs=51.2
Q ss_pred CCCcEEEEcCcccHHHH--HHHHHCCCceEEEE--ECChHHHHHHHHhcCccccccCCCCcEEEEEccccccccCCCeeE
Q 035593 77 PPGPIGILGFGAGSAAR--LILDLYPEAVIHGW--ELDPSVIKVAREFFALEKLEKSYPDRLFVYVGNALKASLKDGFSG 152 (269)
Q Consensus 77 ~~~~VL~iG~G~G~~~~--~l~~~~p~~~v~~v--Eidp~~~~~a~~~~~~~~~~~~~~~rv~~~~~D~~~~~~~~~yD~ 152 (269)
..++||.+|+|.=..-+ .|++ -+++|++| |+++++-+++. ..+++++..+... ..-..+++
T Consensus 11 ~~~~vlvvGgG~vA~rk~~~ll~--~ga~v~visp~~~~~~~~l~~------------~~~i~~~~~~~~~-~dl~~~~l 75 (457)
T PRK10637 11 RDRDCLLVGGGDVAERKARLLLD--AGARLTVNALAFIPQFTAWAD------------AGMLTLVEGPFDE-SLLDTCWL 75 (457)
T ss_pred CCCEEEEECCCHHHHHHHHHHHH--CCCEEEEEcCCCCHHHHHHHh------------CCCEEEEeCCCCh-HHhCCCEE
Confidence 48999999988655443 3333 36667666 77777655533 2357776654332 12245778
Q ss_pred EEEcCCCCCCCCCCCCcHHHHHHHHhhccCCcEEEEEecC
Q 035593 153 ILVDLFSKGSLLSELEDPNTWEKLRQCLRKGGRIMVNVGG 192 (269)
Q Consensus 153 I~~d~~~~~~~~~~l~~~e~~~~~~~~L~pgG~l~~~~~~ 192 (269)
|+....+ ++.=+.+++..+..|+++ |...
T Consensus 76 v~~at~d----------~~~n~~i~~~a~~~~~lv-N~~d 104 (457)
T PRK10637 76 AIAATDD----------DAVNQRVSEAAEARRIFC-NVVD 104 (457)
T ss_pred EEECCCC----------HHHhHHHHHHHHHcCcEE-EECC
Confidence 8764322 344445555555557664 5543
No 495
>PRK08265 short chain dehydrogenase; Provisional
Probab=79.80 E-value=34 Score=29.18 Aligned_cols=71 Identities=6% Similarity=-0.109 Sum_probs=45.7
Q ss_pred CCcEEEEcCcccHHHHHHHHHC--CCceEEEEECChHHHHHHHHhcCccccccCCCCcEEEEEcccccc-----------
Q 035593 78 PGPIGILGFGAGSAARLILDLY--PEAVIHGWELDPSVIKVAREFFALEKLEKSYPDRLFVYVGNALKA----------- 144 (269)
Q Consensus 78 ~~~VL~iG~G~G~~~~~l~~~~--p~~~v~~vEidp~~~~~a~~~~~~~~~~~~~~~rv~~~~~D~~~~----------- 144 (269)
.+++|+.|++ |.+++.+.+.+ .+.+|+.++.+++-.+...+.++ .++.++..|..+.
T Consensus 6 ~k~vlItGas-~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~---------~~~~~~~~Dl~~~~~~~~~~~~~~ 75 (261)
T PRK08265 6 GKVAIVTGGA-TLIGAAVARALVAAGARVAIVDIDADNGAAVAASLG---------ERARFIATDITDDAAIERAVATVV 75 (261)
T ss_pred CCEEEEECCC-ChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhC---------CeeEEEEecCCCHHHHHHHHHHHH
Confidence 5678888854 44555554433 37799999999875444433322 3578888898764
Q ss_pred ccCCCeeEEEEcCC
Q 035593 145 SLKDGFSGILVDLF 158 (269)
Q Consensus 145 ~~~~~yD~I~~d~~ 158 (269)
..-++.|+++..+.
T Consensus 76 ~~~g~id~lv~~ag 89 (261)
T PRK08265 76 ARFGRVDILVNLAC 89 (261)
T ss_pred HHhCCCCEEEECCC
Confidence 11246899987653
No 496
>cd01492 Aos1_SUMO Ubiquitin activating enzyme (E1) subunit Aos1. Aos1 is part of the heterodimeric activating enzyme (E1), specific for the SUMO family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by SUMO family of ubiquitin-like proteins (Ublps) is involved in cell division, nuclear transport, the stress response and signal transduction. Aos1 contains part of the adenylation domain.
Probab=79.80 E-value=14 Score=30.63 Aligned_cols=34 Identities=12% Similarity=0.110 Sum_probs=21.4
Q ss_pred CCCcEEEEcCcc-cH-HHHHHHHHCCCceEEEEECCh
Q 035593 77 PPGPIGILGFGA-GS-AARLILDLYPEAVIHGWELDP 111 (269)
Q Consensus 77 ~~~~VL~iG~G~-G~-~~~~l~~~~p~~~v~~vEidp 111 (269)
...+||.+|||+ |+ ++..|.. ..-.+++.+|-|.
T Consensus 20 ~~s~VlIiG~gglG~evak~La~-~GVg~i~lvD~d~ 55 (197)
T cd01492 20 RSARILLIGLKGLGAEIAKNLVL-SGIGSLTILDDRT 55 (197)
T ss_pred HhCcEEEEcCCHHHHHHHHHHHH-cCCCEEEEEECCc
Confidence 367999999984 22 2233332 2334899999774
No 497
>PRK00045 hemA glutamyl-tRNA reductase; Reviewed
Probab=79.74 E-value=20 Score=33.58 Aligned_cols=100 Identities=10% Similarity=-0.048 Sum_probs=53.4
Q ss_pred CCCcEEEEcCc-ccHHHHHHHHHCCCceEEEEECChHHHHHHHHhcCccccccCCCCcEEEEE-ccccccccCCCeeEEE
Q 035593 77 PPGPIGILGFG-AGSAARLILDLYPEAVIHGWELDPSVIKVAREFFALEKLEKSYPDRLFVYV-GNALKASLKDGFSGIL 154 (269)
Q Consensus 77 ~~~~VL~iG~G-~G~~~~~l~~~~p~~~v~~vEidp~~~~~a~~~~~~~~~~~~~~~rv~~~~-~D~~~~~~~~~yD~I~ 154 (269)
+..+|+.+|+| .|......+......+|++++.+++-.+...+.++. +++. .|.. ..-..+|+||
T Consensus 181 ~~~~vlViGaG~iG~~~a~~L~~~G~~~V~v~~r~~~ra~~la~~~g~-----------~~~~~~~~~--~~l~~aDvVI 247 (423)
T PRK00045 181 SGKKVLVIGAGEMGELVAKHLAEKGVRKITVANRTLERAEELAEEFGG-----------EAIPLDELP--EALAEADIVI 247 (423)
T ss_pred cCCEEEEECchHHHHHHHHHHHHCCCCeEEEEeCCHHHHHHHHHHcCC-----------cEeeHHHHH--HHhccCCEEE
Confidence 46899999987 333333333333334899999998775533333321 1111 2221 1224689998
Q ss_pred EcCCCCCCCCCCCCcHHHHHHHHhhccCCcEEEEEecCC
Q 035593 155 VDLFSKGSLLSELEDPNTWEKLRQCLRKGGRIMVNVGGS 193 (269)
Q Consensus 155 ~d~~~~~~~~~~l~~~e~~~~~~~~L~pgG~l~~~~~~~ 193 (269)
....+ +..+.+.+.++.+.+.=+.++.+++.+..|
T Consensus 248 ~aT~s----~~~~i~~~~l~~~~~~~~~~~~vviDla~P 282 (423)
T PRK00045 248 SSTGA----PHPIIGKGMVERALKARRHRPLLLVDLAVP 282 (423)
T ss_pred ECCCC----CCcEEcHHHHHHHHhhccCCCeEEEEeCCC
Confidence 65322 223345666665532212356788887654
No 498
>PF00106 adh_short: short chain dehydrogenase alcohol dehydrogenase superfamily signature glucose/ribitol dehydrogenase family signature; InterPro: IPR002198 The short-chain dehydrogenases/reductases family (SDR) [] is a very large family of enzymes, most of which are known to be NAD- or NADP-dependent oxidoreductases. As the first member of this family to be characterised was Drosophila alcohol dehydrogenase, this family used to be called [, , ] 'insect-type', or 'short-chain' alcohol dehydrogenases. Most member of this family are proteins of about 250 to 300 amino acid residues. Most dehydrogenases possess at least 2 domains [], the first binding the coenzyme, often NAD, and the second binding the substrate. This latter domain determines the substrate specificity and contains amino acids involved in catalysis. Little sequence similarity has been found in the coenzyme binding domain although there is a large degree of structural similarity, and it has therefore been suggested that the structure of dehydrogenases has arisen through gene fusion of a common ancestral coenzyme nucleotide sequence with various substrate specific domains [].; GO: 0016491 oxidoreductase activity, 0008152 metabolic process; PDB: 3QWI_D 3QWF_G 3IS3_A 3QWH_C 3ITD_A 3L77_A 1HDC_C 2HSD_C 3KVO_A 3KZV_A ....
Probab=79.74 E-value=12 Score=29.26 Aligned_cols=74 Identities=7% Similarity=-0.081 Sum_probs=44.8
Q ss_pred CcEEEEcCcccHHHHHHHHHC---CCceEEEEECC--hHHHHHHHHhcCccccccCCCCcEEEEEcccccc---------
Q 035593 79 GPIGILGFGAGSAARLILDLY---PEAVIHGWELD--PSVIKVAREFFALEKLEKSYPDRLFVYVGNALKA--------- 144 (269)
Q Consensus 79 ~~VL~iG~G~G~~~~~l~~~~---p~~~v~~vEid--p~~~~~a~~~~~~~~~~~~~~~rv~~~~~D~~~~--------- 144 (269)
+.+|+.|+++| +++.+.+++ ...+|..+..+ .+..+.....+.- ...++.++..|..+.
T Consensus 1 k~~lItGa~~g-iG~~~a~~l~~~g~~~v~~~~r~~~~~~~~~l~~~l~~------~~~~~~~~~~D~~~~~~~~~~~~~ 73 (167)
T PF00106_consen 1 KTVLITGASSG-IGRALARALARRGARVVILTSRSEDSEGAQELIQELKA------PGAKITFIECDLSDPESIRALIEE 73 (167)
T ss_dssp EEEEEETTTSH-HHHHHHHHHHHTTTEEEEEEESSCHHHHHHHHHHHHHH------TTSEEEEEESETTSHHHHHHHHHH
T ss_pred CEEEEECCCCH-HHHHHHHHHHhcCceEEEEeeecccccccccccccccc------cccccccccccccccccccccccc
Confidence 35788887644 444444332 34588888888 3333333332221 136799999998764
Q ss_pred --ccCCCeeEEEEcCCC
Q 035593 145 --SLKDGFSGILVDLFS 159 (269)
Q Consensus 145 --~~~~~yD~I~~d~~~ 159 (269)
......|++|..+..
T Consensus 74 ~~~~~~~ld~li~~ag~ 90 (167)
T PF00106_consen 74 VIKRFGPLDILINNAGI 90 (167)
T ss_dssp HHHHHSSESEEEEECSC
T ss_pred ccccccccccccccccc
Confidence 135689999987543
No 499
>TIGR00692 tdh L-threonine 3-dehydrogenase. E. coli His-90 modulates substrate specificity and is believed part of the active site.
Probab=79.58 E-value=18 Score=32.22 Aligned_cols=95 Identities=16% Similarity=0.162 Sum_probs=55.9
Q ss_pred CCCCcEEEEcCc-ccHHHHHHHHHCCCce-EEEEECChHHHHHHHHhcCccccccCCCCcEEEEEccccc----cccCCC
Q 035593 76 LPPGPIGILGFG-AGSAARLILDLYPEAV-IHGWELDPSVIKVAREFFALEKLEKSYPDRLFVYVGNALK----ASLKDG 149 (269)
Q Consensus 76 ~~~~~VL~iG~G-~G~~~~~l~~~~p~~~-v~~vEidp~~~~~a~~~~~~~~~~~~~~~rv~~~~~D~~~----~~~~~~ 149 (269)
.+..+||+.|+| .|..+..+++.. +.+ |++++-++.-.+.+++. +... -+.....+..+ ....+.
T Consensus 160 ~~g~~vlI~~~g~vg~~a~~la~~~-G~~~v~~~~~~~~~~~~~~~~-g~~~-------~v~~~~~~~~~~l~~~~~~~~ 230 (340)
T TIGR00692 160 ISGKSVLVTGAGPIGLMAIAVAKAS-GAYPVIVSDPNEYRLELAKKM-GATY-------VVNPFKEDVVKEVADLTDGEG 230 (340)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHc-CCcEEEEECCCHHHHHHHHHh-CCcE-------EEcccccCHHHHHHHhcCCCC
Confidence 457788886654 344445555543 665 88888888888777653 3210 01111112111 123456
Q ss_pred eeEEEEcCCCCCCCCCCCCcHHHHHHHHhhccCCcEEEEE
Q 035593 150 FSGILVDLFSKGSLLSELEDPNTWEKLRQCLRKGGRIMVN 189 (269)
Q Consensus 150 yD~I~~d~~~~~~~~~~l~~~e~~~~~~~~L~pgG~l~~~ 189 (269)
+|+|+-... ..+.+..+.+.|+++|.++.-
T Consensus 231 ~d~vld~~g----------~~~~~~~~~~~l~~~g~~v~~ 260 (340)
T TIGR00692 231 VDVFLEMSG----------APKALEQGLQAVTPGGRVSLL 260 (340)
T ss_pred CCEEEECCC----------CHHHHHHHHHhhcCCCEEEEE
Confidence 999974211 245778889999999988654
No 500
>PRK05867 short chain dehydrogenase; Provisional
Probab=79.42 E-value=17 Score=30.70 Aligned_cols=75 Identities=8% Similarity=-0.015 Sum_probs=48.0
Q ss_pred CCCcEEEEcCcccHHHHHHHHHC--CCceEEEEECChHHHHHHHHhcCccccccCCCCcEEEEEcccccc----------
Q 035593 77 PPGPIGILGFGAGSAARLILDLY--PEAVIHGWELDPSVIKVAREFFALEKLEKSYPDRLFVYVGNALKA---------- 144 (269)
Q Consensus 77 ~~~~VL~iG~G~G~~~~~l~~~~--p~~~v~~vEidp~~~~~a~~~~~~~~~~~~~~~rv~~~~~D~~~~---------- 144 (269)
..+.+|+.|+++| ++..+.+++ .+.+|..++.+++-.+...+.+... ..++..+..|..+.
T Consensus 8 ~~k~vlVtGas~g-IG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~------~~~~~~~~~D~~~~~~~~~~~~~~ 80 (253)
T PRK05867 8 HGKRALITGASTG-IGKRVALAYVEAGAQVAIAARHLDALEKLADEIGTS------GGKVVPVCCDVSQHQQVTSMLDQV 80 (253)
T ss_pred CCCEEEEECCCch-HHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHHHhc------CCeEEEEEccCCCHHHHHHHHHHH
Confidence 3678999997544 444444332 3779999999987766555443211 24678888888764
Q ss_pred -ccCCCeeEEEEcCC
Q 035593 145 -SLKDGFSGILVDLF 158 (269)
Q Consensus 145 -~~~~~yD~I~~d~~ 158 (269)
..-++.|+++..+.
T Consensus 81 ~~~~g~id~lv~~ag 95 (253)
T PRK05867 81 TAELGGIDIAVCNAG 95 (253)
T ss_pred HHHhCCCCEEEECCC
Confidence 11257899997653
Done!