Query 035594
Match_columns 336
No_of_seqs 134 out of 345
Neff 2.8
Searched_HMMs 29240
Date Mon Mar 25 06:44:26 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/035594.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/035594hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2dmq_A LIM/homeobox protein LH 99.8 1.8E-20 6.2E-25 141.6 5.0 65 85-154 7-71 (80)
2 2dms_A Homeobox protein OTX2; 99.8 1.6E-20 5.6E-25 142.4 3.9 65 85-154 7-71 (80)
3 1jgg_A Segmentation protein EV 99.8 1.8E-20 6.3E-25 135.1 3.8 60 85-149 1-60 (60)
4 1zq3_P PRD-4, homeotic bicoid 99.8 2.6E-20 8.8E-25 137.9 4.6 63 85-152 2-64 (68)
5 1ig7_A Homeotic protein MSX-1; 99.8 2.2E-20 7.6E-25 133.3 4.0 57 86-147 1-57 (58)
6 2hdd_A Protein (engrailed home 99.8 1.9E-20 6.6E-25 135.4 3.3 59 85-148 3-61 (61)
7 2dmu_A Homeobox protein goosec 99.8 3.2E-20 1.1E-24 137.4 4.4 61 85-150 7-67 (70)
8 2cue_A Paired box protein PAX6 99.8 4.2E-20 1.4E-24 140.4 4.9 64 85-153 7-70 (80)
9 2h1k_A IPF-1, pancreatic and d 99.8 3.4E-20 1.2E-24 135.1 4.1 59 85-148 3-61 (63)
10 2vi6_A Homeobox protein nanog; 99.8 1.8E-20 6.2E-25 135.9 2.3 59 85-148 3-61 (62)
11 2da2_A Alpha-fetoprotein enhan 99.8 2E-20 6.8E-25 138.3 2.5 61 85-150 7-67 (70)
12 3a02_A Homeobox protein arista 99.8 2.4E-20 8.1E-25 134.6 2.8 59 87-150 1-59 (60)
13 2da3_A Alpha-fetoprotein enhan 99.8 2.6E-20 8.9E-25 140.1 2.9 61 85-150 17-77 (80)
14 2da1_A Alpha-fetoprotein enhan 99.8 2.4E-20 8.2E-25 137.8 2.6 61 85-150 7-67 (70)
15 1puf_A HOX-1.7, homeobox prote 99.8 8E-20 2.7E-24 138.0 5.3 63 84-151 12-74 (77)
16 2cra_A Homeobox protein HOX-B1 99.8 2.8E-20 9.6E-25 138.0 2.5 60 85-149 7-66 (70)
17 2dmt_A Homeobox protein BARH-l 99.8 5.3E-20 1.8E-24 139.9 4.0 61 85-150 17-77 (80)
18 1ahd_P Antennapedia protein mu 99.8 3.5E-20 1.2E-24 137.4 2.9 63 85-152 2-64 (68)
19 2kt0_A Nanog, homeobox protein 99.8 4.1E-20 1.4E-24 140.7 3.3 61 85-150 22-82 (84)
20 2k40_A Homeobox expressed in E 99.8 4.5E-20 1.5E-24 135.7 3.2 61 86-151 2-62 (67)
21 1nk2_P Homeobox protein VND; h 99.8 1.2E-19 4.2E-24 137.0 5.3 63 85-152 9-71 (77)
22 2e1o_A Homeobox protein PRH; D 99.8 8.5E-20 2.9E-24 135.5 4.2 61 85-150 7-67 (70)
23 2cuf_A FLJ21616 protein; homeo 99.8 1.3E-19 4.6E-24 141.8 5.4 67 85-152 7-84 (95)
24 1fjl_A Paired protein; DNA-bin 99.8 1E-19 3.5E-24 138.3 4.6 62 85-151 18-79 (81)
25 1yz8_P Pituitary homeobox 2; D 99.8 3.1E-20 1.1E-24 137.1 1.7 63 85-152 3-65 (68)
26 2djn_A Homeobox protein DLX-5; 99.8 3.7E-20 1.3E-24 137.4 1.8 60 85-149 7-66 (70)
27 1bw5_A ISL-1HD, insulin gene e 99.8 4.2E-20 1.4E-24 135.4 2.0 61 85-150 3-63 (66)
28 1ftt_A TTF-1 HD, thyroid trans 99.8 9.2E-20 3.2E-24 134.9 3.9 63 85-152 2-64 (68)
29 2da4_A Hypothetical protein DK 99.8 5.1E-20 1.8E-24 139.7 2.2 60 85-149 8-71 (80)
30 2hi3_A Homeodomain-only protei 99.8 1.4E-19 4.7E-24 135.6 4.3 61 86-151 3-64 (73)
31 1uhs_A HOP, homeodomain only p 99.8 1.5E-19 5E-24 134.8 4.3 61 86-151 2-63 (72)
32 2l7z_A Homeobox protein HOX-A1 99.8 1.2E-19 4.3E-24 136.1 3.6 62 85-151 7-68 (73)
33 2r5y_A Homeotic protein sex co 99.8 1.1E-19 3.9E-24 140.2 3.0 60 85-149 28-87 (88)
34 1b8i_A Ultrabithorax, protein 99.8 1.3E-19 4.5E-24 138.6 3.2 61 85-150 20-80 (81)
35 1b72_A Protein (homeobox prote 99.8 1.8E-19 6.2E-24 141.5 4.1 62 84-150 33-94 (97)
36 3rkq_A Homeobox protein NKX-2. 99.8 1.9E-19 6.3E-24 127.3 3.6 57 85-146 2-58 (58)
37 3a01_A Homeodomain-containing 99.8 2.3E-19 8E-24 140.8 4.4 63 85-152 17-79 (93)
38 2m0c_A Homeobox protein arista 99.8 1.6E-19 5.6E-24 134.0 3.3 62 85-151 9-70 (75)
39 3a03_A T-cell leukemia homeobo 99.8 2.7E-19 9.1E-24 128.0 3.4 54 90-148 2-55 (56)
40 1wh5_A ZF-HD homeobox family p 99.8 2E-19 6.9E-24 138.5 2.6 59 84-147 16-78 (80)
41 2ly9_A Zinc fingers and homeob 99.7 2.6E-19 8.9E-24 133.5 2.8 62 85-151 6-67 (74)
42 2dn0_A Zinc fingers and homeob 99.7 1.7E-19 5.6E-24 136.0 1.6 63 85-152 8-70 (76)
43 1puf_B PRE-B-cell leukemia tra 99.7 6.4E-19 2.2E-23 131.4 3.8 63 85-152 1-66 (73)
44 2da5_A Zinc fingers and homeob 99.7 4.9E-19 1.7E-23 133.7 3.2 61 86-151 8-68 (75)
45 2da6_A Hepatocyte nuclear fact 99.7 8.6E-19 2.9E-23 143.3 4.6 67 85-152 6-89 (102)
46 1akh_A Protein (mating-type pr 99.7 3.9E-19 1.3E-23 128.0 2.2 57 85-146 5-61 (61)
47 2ecc_A Homeobox and leucine zi 99.7 9.3E-19 3.2E-23 136.3 3.9 63 85-152 3-65 (76)
48 1b72_B Protein (PBX1); homeodo 99.7 1.9E-18 6.6E-23 132.2 4.3 63 85-152 1-66 (87)
49 1wh7_A ZF-HD homeobox family p 99.7 7.6E-19 2.6E-23 136.0 1.1 57 85-147 17-78 (80)
50 1k61_A Mating-type protein alp 99.7 2.5E-18 8.5E-23 123.7 3.3 56 88-148 1-59 (60)
51 1du6_A PBX1, homeobox protein 99.7 1.3E-18 4.6E-23 126.5 1.3 58 85-147 3-63 (64)
52 3nar_A ZHX1, zinc fingers and 99.7 2.5E-18 8.7E-23 135.1 2.8 61 85-150 25-85 (96)
53 2ecb_A Zinc fingers and homeob 99.7 4.2E-18 1.4E-22 135.2 3.6 59 89-152 15-73 (89)
54 1x2n_A Homeobox protein pknox1 99.7 7.7E-18 2.6E-22 125.5 4.3 60 85-149 7-69 (73)
55 1lfb_A Liver transcription fac 99.7 2.6E-18 8.8E-23 138.2 1.6 66 85-151 9-91 (99)
56 2dmp_A Zinc fingers and homeob 99.7 7.5E-18 2.6E-22 131.5 3.4 61 87-152 15-75 (89)
57 1au7_A Protein PIT-1, GHF-1; c 99.7 6.8E-18 2.3E-22 142.0 2.3 60 85-149 87-146 (146)
58 1e3o_C Octamer-binding transcr 99.7 8.4E-18 2.9E-22 142.8 2.7 59 85-148 101-159 (160)
59 2e19_A Transcription factor 8; 99.7 9.8E-18 3.4E-22 124.6 2.6 57 86-147 4-60 (64)
60 1mnm_C Protein (MAT alpha-2 tr 99.7 1.3E-17 4.5E-22 128.4 3.4 58 85-147 27-87 (87)
61 2cqx_A LAG1 longevity assuranc 99.7 3.3E-18 1.1E-22 129.5 -0.1 58 86-148 9-67 (72)
62 2xsd_C POU domain, class 3, tr 99.7 9.6E-18 3.3E-22 143.9 2.0 62 85-151 99-160 (164)
63 1le8_B Mating-type protein alp 99.7 1.8E-17 6.1E-22 127.2 3.0 61 86-151 3-66 (83)
64 3d1n_I POU domain, class 6, tr 99.7 3.1E-17 1.1E-21 137.7 4.1 58 85-147 93-150 (151)
65 2l9r_A Homeobox protein NKX-3. 99.7 1E-17 3.4E-22 127.2 0.6 56 91-151 10-65 (69)
66 2dmn_A Homeobox protein TGIF2L 99.6 5.2E-17 1.8E-21 125.1 3.4 63 85-152 7-72 (83)
67 2d5v_A Hepatocyte nuclear fact 99.6 3.8E-17 1.3E-21 138.0 1.9 60 85-149 97-156 (164)
68 3nau_A Zinc fingers and homeob 99.6 6.3E-17 2.2E-21 123.9 2.5 52 92-148 11-62 (66)
69 3l1p_A POU domain, class 5, tr 99.6 8.4E-17 2.9E-21 136.3 2.4 60 84-148 95-154 (155)
70 1wi3_A DNA-binding protein SAT 99.6 1.4E-16 4.8E-21 124.1 2.5 55 85-144 7-62 (71)
71 1x2m_A LAG1 longevity assuranc 99.6 3E-16 1E-20 118.7 0.8 49 94-147 9-58 (64)
72 3k2a_A Homeobox protein MEIS2; 99.6 9.7E-16 3.3E-20 114.1 2.5 57 91-152 4-63 (67)
73 1ic8_A Hepatocyte nuclear fact 99.5 2.1E-15 7.1E-20 133.8 0.2 63 85-148 115-194 (194)
74 2h8r_A Hepatocyte nuclear fact 99.4 1E-13 3.5E-18 126.1 3.7 60 85-145 142-218 (221)
75 1mh3_A Maltose binding-A1 home 99.3 1.2E-13 4.1E-18 124.4 0.8 56 86-146 366-421 (421)
76 2da7_A Zinc finger homeobox pr 99.2 1.6E-12 5.6E-17 101.2 2.3 48 92-144 12-59 (71)
77 2lk2_A Homeobox protein TGIF1; 99.2 4.2E-12 1.4E-16 101.7 4.4 59 90-153 10-71 (89)
78 2nzz_A Penetratin conjugated G 98.6 9.1E-09 3.1E-13 71.2 0.5 21 132-152 1-21 (37)
79 2ys9_A Homeobox and leucine zi 75.8 0.73 2.5E-05 35.9 0.7 37 98-139 19-55 (70)
80 1jko_C HIN recombinase, DNA-in 63.5 2 6.9E-05 27.4 0.7 43 91-143 5-47 (52)
81 2lv7_A Calcium-binding protein 62.0 7.4 0.00025 29.6 3.7 51 86-138 24-78 (100)
82 1fi6_A EH domain protein REPS1 61.7 3 0.0001 30.7 1.4 42 90-135 1-46 (92)
83 1hlv_A CENP-B, major centromer 58.1 6.8 0.00023 30.2 2.9 51 87-145 3-53 (131)
84 2glo_A Brinker CG9653-PA; prot 57.5 4.7 0.00016 28.0 1.7 46 88-139 2-47 (59)
85 2rgt_A Fusion of LIM/homeobox 56.6 0.13 4.4E-06 42.8 -7.6 29 84-113 135-163 (169)
86 3hug_A RNA polymerase sigma fa 52.7 7.8 0.00027 28.7 2.4 40 91-140 37-76 (92)
87 1tc3_C Protein (TC3 transposas 52.0 7.5 0.00026 24.0 1.9 39 91-139 5-43 (51)
88 2elh_A CG11849-PA, LD40883P; s 48.6 9.9 0.00034 28.2 2.4 43 86-138 17-59 (87)
89 2o8x_A Probable RNA polymerase 47.1 7.6 0.00026 26.5 1.4 39 91-139 15-53 (70)
90 3i5g_B Myosin regulatory light 46.2 31 0.001 27.3 5.1 38 87-124 5-46 (153)
91 1c07_A Protein (epidermal grow 45.2 5.4 0.00018 29.6 0.4 43 90-136 2-48 (95)
92 3mzy_A RNA polymerase sigma-H 44.3 11 0.00037 28.8 2.1 38 91-139 109-146 (164)
93 2lhi_A Calmodulin, serine/thre 43.0 7.7 0.00026 31.5 1.1 36 89-124 2-41 (176)
94 1eh2_A EPS15; calcium binding, 40.9 15 0.00052 28.5 2.4 44 88-135 5-51 (106)
95 1fse_A GERE; helix-turn-helix 40.6 8.8 0.0003 26.5 0.9 49 88-147 8-56 (74)
96 2x48_A CAG38821; archeal virus 39.4 6 0.0002 26.4 -0.1 43 87-139 9-53 (55)
97 1je8_A Nitrate/nitrite respons 37.6 7.6 0.00026 28.6 0.2 46 89-145 19-64 (82)
98 3j04_B Myosin regulatory light 36.6 31 0.0011 25.4 3.5 47 92-140 1-51 (143)
99 3c57_A Two component transcrip 36.0 12 0.00039 28.3 1.0 43 91-144 27-69 (95)
100 1s7o_A Hypothetical UPF0122 pr 35.8 19 0.00065 28.5 2.3 47 91-147 22-68 (113)
101 1iq3_A Ralbp1-interacting prot 35.3 5.6 0.00019 30.9 -0.9 50 85-138 9-62 (110)
102 2jn6_A Protein CGL2762, transp 35.2 16 0.00055 27.0 1.7 40 89-138 3-44 (97)
103 1p4w_A RCSB; solution structur 33.9 19 0.00063 28.0 1.9 45 89-144 32-76 (99)
104 2mys_C Myosin; muscle protein, 32.2 27 0.00093 25.6 2.5 45 92-138 2-50 (149)
105 2rnj_A Response regulator prot 31.8 8.3 0.00028 28.6 -0.4 45 90-145 28-72 (91)
106 1xsv_A Hypothetical UPF0122 pr 30.5 23 0.00078 27.8 1.9 47 91-147 25-71 (113)
107 3i5g_C Myosin catalytic light 30.2 18 0.0006 28.9 1.3 43 91-135 2-50 (159)
108 1u78_A TC3 transposase, transp 29.3 24 0.00083 26.8 1.8 41 90-140 5-45 (141)
109 2joj_A Centrin protein; N-term 29.3 15 0.00052 24.6 0.7 42 92-135 1-46 (77)
110 3fwb_A Cell division control p 28.9 36 0.0012 25.4 2.7 40 85-124 10-53 (161)
111 1x3u_A Transcriptional regulat 28.9 8.7 0.0003 27.0 -0.7 40 92-142 17-56 (79)
112 3q0w_A HTH-type transcriptiona 28.2 7.8 0.00027 31.7 -1.2 41 97-143 50-90 (236)
113 1ku3_A Sigma factor SIGA; heli 28.1 22 0.00076 25.0 1.4 39 91-139 10-52 (73)
114 2jpc_A SSRB; DNA binding prote 27.4 14 0.00047 24.9 0.1 42 95-147 2-43 (61)
115 2kgr_A Intersectin-1; structur 27.3 22 0.00076 27.2 1.3 34 88-121 4-41 (111)
116 2opo_A Polcalcin CHE A 3; calc 26.4 17 0.00057 25.2 0.4 45 91-138 4-52 (86)
117 1wdc_B Scallop myosin; calcium 26.0 48 0.0016 24.9 3.0 48 90-139 10-61 (156)
118 2p7v_B Sigma-70, RNA polymeras 25.7 16 0.00055 25.5 0.2 38 91-138 5-46 (68)
119 1j7q_A CAVP, calcium vector pr 25.5 37 0.0013 23.4 2.1 43 89-133 5-51 (86)
120 1or7_A Sigma-24, RNA polymeras 25.3 29 0.00098 27.5 1.7 46 92-147 141-186 (194)
121 3fia_A Intersectin-1; EH 1 dom 25.3 25 0.00086 28.9 1.3 34 86-119 21-57 (121)
122 1rp3_A RNA polymerase sigma fa 24.1 35 0.0012 27.7 2.0 46 91-146 187-232 (239)
123 3lph_A Protein REV; helix-loop 23.5 32 0.0011 27.0 1.5 39 97-154 18-56 (72)
124 1avs_A Troponin C; muscle cont 23.4 34 0.0012 23.9 1.6 46 91-138 13-62 (90)
125 3o48_A Mitochondria fission 1 21.9 92 0.0032 26.4 4.2 35 90-124 16-51 (134)
126 2rn7_A IS629 ORFA; helix, all 20.7 44 0.0015 25.0 1.8 46 89-138 4-51 (108)
127 3u0k_A Rcamp; fluorescent prot 20.3 37 0.0013 33.8 1.7 46 88-135 292-341 (440)
No 1
>2dmq_A LIM/homeobox protein LHX9; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.80 E-value=1.8e-20 Score=141.55 Aligned_cols=65 Identities=22% Similarity=0.336 Sum_probs=61.4
Q ss_pred CCCCCCCCCHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHhhcCCCCCCcceecccchhhHHHHhhhhhhh
Q 035594 85 LGSSRWNPTPEQLLALEEMYRRGTRTPSAEQIQHIASQLRRFGKIEGKNVFYWFQNHKARERQKRRRWES 154 (336)
Q Consensus 85 ~rR~Rw~FT~EQLqiLEelF~~g~~YPs~eqRqeIA~eL~~~G~LtEsqVqvWFQNRRAReKRKrRr~e~ 154 (336)
.+|.|+.||++|+.+||..|..++ ||+..+|++||.+|+ |++.+|++||||||+|+||+.++++.
T Consensus 7 ~rr~Rt~ft~~Q~~~Le~~F~~~~-yp~~~~r~~La~~l~----l~~~qV~~WFqNrR~k~kk~~~~~~~ 71 (80)
T 2dmq_A 7 GKRMRTSFKHHQLRTMKSYFAINH-NPDAKDLKQLAQKTG----LTKRVLQVWFQNARAKFRRNLLRQEN 71 (80)
T ss_dssp CCCCCCCCCHHHHHHHHHHHHHCS-SCCHHHHHHHHHHTC----CCHHHHHHHHHHHHHHHHHHHHSSCC
T ss_pred CCCCCCCCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHhC----CCHHHhhHccHHHHHHHHHHHHHHhc
Confidence 589999999999999999999999 999999999999998 99999999999999999998877643
No 2
>2dms_A Homeobox protein OTX2; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.80 E-value=1.6e-20 Score=142.41 Aligned_cols=65 Identities=23% Similarity=0.351 Sum_probs=61.2
Q ss_pred CCCCCCCCCHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHhhcCCCCCCcceecccchhhHHHHhhhhhhh
Q 035594 85 LGSSRWNPTPEQLLALEEMYRRGTRTPSAEQIQHIASQLRRFGKIEGKNVFYWFQNHKARERQKRRRWES 154 (336)
Q Consensus 85 ~rR~Rw~FT~EQLqiLEelF~~g~~YPs~eqRqeIA~eL~~~G~LtEsqVqvWFQNRRAReKRKrRr~e~ 154 (336)
.+|.|+.||++||.+||..|..++ ||+..+|++||..|+ |++.+|++||||||||+|++.+..+.
T Consensus 7 ~rr~Rt~ft~~Q~~~Le~~F~~~~-yp~~~~r~~La~~l~----l~~~qV~~WFqNRR~k~rk~~~~~~~ 71 (80)
T 2dms_A 7 GRRERTTFTRAQLDVLEALFAKTR-YPDIFMREEVALKIN----LPESRVQVWFKNRRAKCRQQQQQQQN 71 (80)
T ss_dssp CCCCCSSCCHHHHHHHHHHHHHCS-SCCHHHHHHHHHHTT----CCHHHHHHHHHHHHTHHHHTTCSCCC
T ss_pred CCCCCCCCCHHHHHHHHHHHHccC-CCCHHHHHHHHHHHC----cCHHHhhhhhHHHhHHhhHHHHccCC
Confidence 589999999999999999999999 999999999999998 99999999999999999998776643
No 3
>1jgg_A Segmentation protein EVEN-skipped; homeodomain, protein-DNA complex, transcription/DNA complex; 2.00A {Drosophila melanogaster} SCOP: a.4.1.1
Probab=99.80 E-value=1.8e-20 Score=135.13 Aligned_cols=60 Identities=25% Similarity=0.385 Sum_probs=55.7
Q ss_pred CCCCCCCCCHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHhhcCCCCCCcceecccchhhHHHHhh
Q 035594 85 LGSSRWNPTPEQLLALEEMYRRGTRTPSAEQIQHIASQLRRFGKIEGKNVFYWFQNHKARERQKR 149 (336)
Q Consensus 85 ~rR~Rw~FT~EQLqiLEelF~~g~~YPs~eqRqeIA~eL~~~G~LtEsqVqvWFQNRRAReKRKr 149 (336)
++|.|+.||++|+.+||..|..++ ||+..++.+||..|+ |++.+|++||||||+|+|+++
T Consensus 1 ~rr~Rt~ft~~Q~~~Le~~F~~~~-yp~~~~r~~La~~l~----l~~~qV~~WFqNrR~k~kr~r 60 (60)
T 1jgg_A 1 VRRYRTAFTRDQLGRLEKEFYKEN-YVSRPRRCELAAQLN----LPESTIKVWFQNRRMKDKRQR 60 (60)
T ss_dssp --CCCCCCCHHHHHHHHHHHHHCS-CCCHHHHHHHHHHHT----SCHHHHHHHHHHHHHHHHHC-
T ss_pred CCCCCCCCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHC----cCHHHHHHhhHHHHhHhhccC
Confidence 378999999999999999999999 999999999999998 999999999999999999864
No 4
>1zq3_P PRD-4, homeotic bicoid protein; protein-DNA complex, double helix, helix-turn-helix; NMR {Drosophila melanogaster} SCOP: a.4.1.1
Probab=99.80 E-value=2.6e-20 Score=137.85 Aligned_cols=63 Identities=21% Similarity=0.388 Sum_probs=60.2
Q ss_pred CCCCCCCCCHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHhhcCCCCCCcceecccchhhHHHHhhhhh
Q 035594 85 LGSSRWNPTPEQLLALEEMYRRGTRTPSAEQIQHIASQLRRFGKIEGKNVFYWFQNHKARERQKRRRW 152 (336)
Q Consensus 85 ~rR~Rw~FT~EQLqiLEelF~~g~~YPs~eqRqeIA~eL~~~G~LtEsqVqvWFQNRRAReKRKrRr~ 152 (336)
+++.|+.||++||.+||..|..++ ||+..+|.+||..|+ |++.+|++||||||+|+|++.++.
T Consensus 2 ~rr~Rt~ft~~Q~~~Le~~F~~~~-yp~~~~r~~La~~l~----l~~~qV~~WFqNRR~k~kk~~~~~ 64 (68)
T 1zq3_P 2 PRRTRTTFTSSQIAELEQHFLQGR-YLTAPRLADLSAKLA----LGTAQVKIWFKNRRRRHKIQSDQH 64 (68)
T ss_dssp CSCCSCCCCHHHHHHHHHHHTTCS-SCCHHHHHHHHHHHT----SCHHHHHHHHHHHHHHHHHHHHTT
T ss_pred cCCCCCCcCHHHHHHHHHHHhcCC-CcCHHHHHHHHHHhC----cCHHHhhHhhHHHHHHHHHHhccc
Confidence 589999999999999999999999 999999999999998 999999999999999999987765
No 5
>1ig7_A Homeotic protein MSX-1; helix-turn-helix, transcription/DNA complex; 2.20A {Mus musculus} SCOP: a.4.1.1
Probab=99.80 E-value=2.2e-20 Score=133.31 Aligned_cols=57 Identities=32% Similarity=0.445 Sum_probs=55.2
Q ss_pred CCCCCCCCHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHhhcCCCCCCcceecccchhhHHHH
Q 035594 86 GSSRWNPTPEQLLALEEMYRRGTRTPSAEQIQHIASQLRRFGKIEGKNVFYWFQNHKARERQ 147 (336)
Q Consensus 86 rR~Rw~FT~EQLqiLEelF~~g~~YPs~eqRqeIA~eL~~~G~LtEsqVqvWFQNRRAReKR 147 (336)
+++|+.||++|+.+||..|..++ ||+..+|.+||..|+ |++.+|++||||||+|+||
T Consensus 1 rr~Rt~ft~~Q~~~Le~~F~~~~-yp~~~~r~~La~~l~----l~~~qV~~WFqNrR~k~kr 57 (58)
T 1ig7_A 1 RKPRTPFTTAQLLALERKFRQKQ-YLSIAERAEFSSSLS----LTETQVKIWFQNRRAKAKR 57 (58)
T ss_dssp CCCCCCCCHHHHHHHHHHHHHCS-CCCHHHHHHHHHHTT----CCHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCHHHHHHHHHHHhcCC-CcCHHHHHHHHHHHC----cCHHHhhhhhhHhhhhhcc
Confidence 58899999999999999999999 999999999999998 9999999999999999987
No 6
>2hdd_A Protein (engrailed homeodomain Q50K); DNA binding, complex (DNA binding protein/DNA), transcription/DNA complex; HET: DNA; 1.90A {Drosophila melanogaster} SCOP: a.4.1.1 PDB: 1hdd_C* 2jwt_A 3hdd_A 1p7j_A* 1p7i_A* 2hos_A 2hot_A 1du0_A* 1ztr_A 1enh_A 2p81_A
Probab=99.79 E-value=1.9e-20 Score=135.41 Aligned_cols=59 Identities=20% Similarity=0.361 Sum_probs=53.5
Q ss_pred CCCCCCCCCHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHhhcCCCCCCcceecccchhhHHHHh
Q 035594 85 LGSSRWNPTPEQLLALEEMYRRGTRTPSAEQIQHIASQLRRFGKIEGKNVFYWFQNHKARERQK 148 (336)
Q Consensus 85 ~rR~Rw~FT~EQLqiLEelF~~g~~YPs~eqRqeIA~eL~~~G~LtEsqVqvWFQNRRAReKRK 148 (336)
.+|.|+.||++|+.+||..|..++ ||+..+|++||..|+ |++.+|++||||||+|+||+
T Consensus 3 ~rr~Rt~ft~~Q~~~Le~~F~~~~-yp~~~~r~~La~~l~----l~~~qV~~WFqNrR~k~kk~ 61 (61)
T 2hdd_A 3 EKRPRTAFSSEQLARLKREFNENR-YLTERRRQQLSSELG----LNEAQIKIWFKNKRAKIKKS 61 (61)
T ss_dssp ----CCCCCHHHHHHHHHHHHHCS-SCCHHHHHHHHHHHT----CCHHHHHHHHHHHHHHHHTC
T ss_pred CCCCCCCCCHHHHHHHHHHHHccC-CCCHHHHHHHHHHHC----cCHHHHHHHhhhhccccccC
Confidence 489999999999999999999999 999999999999998 99999999999999999873
No 7
>2dmu_A Homeobox protein goosecoid; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.79 E-value=3.2e-20 Score=137.42 Aligned_cols=61 Identities=26% Similarity=0.387 Sum_probs=58.1
Q ss_pred CCCCCCCCCHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHhhcCCCCCCcceecccchhhHHHHhhh
Q 035594 85 LGSSRWNPTPEQLLALEEMYRRGTRTPSAEQIQHIASQLRRFGKIEGKNVFYWFQNHKARERQKRR 150 (336)
Q Consensus 85 ~rR~Rw~FT~EQLqiLEelF~~g~~YPs~eqRqeIA~eL~~~G~LtEsqVqvWFQNRRAReKRKrR 150 (336)
.+|.|+.||++|+.+||..|..++ ||+..+|++||..|+ |++.+|++||||||+|+|++..
T Consensus 7 ~rr~Rt~ft~~q~~~Le~~F~~~~-yp~~~~r~~LA~~l~----l~~~qV~~WFqNrR~k~rr~~~ 67 (70)
T 2dmu_A 7 GRRHRTIFTDEQLEALENLFQETK-YPDVGTREQLARKVH----LREEKVEVWFKNRRAKWRRSGP 67 (70)
T ss_dssp SCCCCCCCCHHHHHHHHHHHHHCS-SCCHHHHHHHHHHHT----CCHHHHHHHHHHHHHHHHHTST
T ss_pred CCCCCCCCCHHHHHHHHHHHHccC-CCCHHHHHHHHHHHC----CCHHHeehccccccccccccCC
Confidence 589999999999999999999999 999999999999998 9999999999999999998653
No 8
>2cue_A Paired box protein PAX6; homeobox domain, transcription factor, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.79 E-value=4.2e-20 Score=140.45 Aligned_cols=64 Identities=23% Similarity=0.368 Sum_probs=60.9
Q ss_pred CCCCCCCCCHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHhhcCCCCCCcceecccchhhHHHHhhhhhh
Q 035594 85 LGSSRWNPTPEQLLALEEMYRRGTRTPSAEQIQHIASQLRRFGKIEGKNVFYWFQNHKARERQKRRRWE 153 (336)
Q Consensus 85 ~rR~Rw~FT~EQLqiLEelF~~g~~YPs~eqRqeIA~eL~~~G~LtEsqVqvWFQNRRAReKRKrRr~e 153 (336)
.+|.|+.||++||.+||..|..++ ||+..+|++||..|+ |++.+|++||||||+|+|++.+...
T Consensus 7 ~rr~Rt~ft~~Q~~~Le~~F~~~~-yp~~~~r~~LA~~l~----l~~~qV~vWFqNRR~k~kk~~~~~~ 70 (80)
T 2cue_A 7 GQRNRTSFTQEQIEALEKEFERTH-YPDVFARERLAAKID----LPEARIQVWFSNRRAKWRREEKLRN 70 (80)
T ss_dssp SCCCCCCSCHHHHHHHHHHHTTCS-SCCHHHHHHHHHHTT----CCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCccCHHHHHHHHHHHhccC-CCCHHHHHHHHHHhC----CCHHHhhHHHHHHHHHHHHHhhhhh
Confidence 589999999999999999999999 999999999999998 9999999999999999999887763
No 9
>2h1k_A IPF-1, pancreatic and duodenal homeobox 1, homeodomain; protein-DNA complex, transcription/DNA complex; 2.42A {Mesocricetus auratus}
Probab=99.79 E-value=3.4e-20 Score=135.15 Aligned_cols=59 Identities=24% Similarity=0.315 Sum_probs=55.7
Q ss_pred CCCCCCCCCHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHhhcCCCCCCcceecccchhhHHHHh
Q 035594 85 LGSSRWNPTPEQLLALEEMYRRGTRTPSAEQIQHIASQLRRFGKIEGKNVFYWFQNHKARERQK 148 (336)
Q Consensus 85 ~rR~Rw~FT~EQLqiLEelF~~g~~YPs~eqRqeIA~eL~~~G~LtEsqVqvWFQNRRAReKRK 148 (336)
.+|.|+.||++|+.+||..|..++ ||+..+|.+||..|+ |++.+|++||||||||+|+.
T Consensus 3 ~rr~Rt~ft~~Q~~~Le~~F~~~~-yp~~~~r~~LA~~l~----l~~~qV~~WFqNrR~k~kk~ 61 (63)
T 2h1k_A 3 NKRTRTAYTRAQLLELEKEFLFNK-YISRPRRVELAVMLN----LTERHIKIWFQNRRMKWKKE 61 (63)
T ss_dssp --CCCCCCCHHHHHHHHHHHHHCS-SCCHHHHHHHHHHHT----CCHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCcCHHHHHHHHHHHhcCC-CcCHHHHHHHHHHhC----cCHHHhhHHHHhhhhhhhhh
Confidence 478999999999999999999999 999999999999998 99999999999999999985
No 10
>2vi6_A Homeobox protein nanog; homeodomain, DNA-binding, transcription, transcription facto developmental protein, transcription regulation, NUC homeobox; 2.6A {Mus musculus}
Probab=99.79 E-value=1.8e-20 Score=135.92 Aligned_cols=59 Identities=27% Similarity=0.352 Sum_probs=52.8
Q ss_pred CCCCCCCCCHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHhhcCCCCCCcceecccchhhHHHHh
Q 035594 85 LGSSRWNPTPEQLLALEEMYRRGTRTPSAEQIQHIASQLRRFGKIEGKNVFYWFQNHKARERQK 148 (336)
Q Consensus 85 ~rR~Rw~FT~EQLqiLEelF~~g~~YPs~eqRqeIA~eL~~~G~LtEsqVqvWFQNRRAReKRK 148 (336)
.++.|+.||++|+.+||..|..++ ||+..+|.+||..|+ |++.+|++||||||||+|++
T Consensus 3 ~rr~Rt~ft~~q~~~Le~~F~~~~-yp~~~~r~~LA~~l~----l~~~qV~~WFqNrR~k~kr~ 61 (62)
T 2vi6_A 3 KQKMRTVFSQAQLCALKDRFQKQK-YLSLQQMQELSSILN----LSYKQVKTWFQNQRMKCKRW 61 (62)
T ss_dssp -----CCCCHHHHHHHHHHHHHCS-CCCHHHHHHHHHHHT----CCHHHHHHHHHHHHHTCGGG
T ss_pred CCCCCCCCCHHHHHHHHHHHHhCC-CCCHHHHHHHHHHhC----CCHHHhhHHhHHhhcchhhc
Confidence 478999999999999999999999 999999999999998 99999999999999999986
No 11
>2da2_A Alpha-fetoprotein enhancer binding protein; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics; NMR {Homo sapiens}
Probab=99.79 E-value=2e-20 Score=138.25 Aligned_cols=61 Identities=23% Similarity=0.423 Sum_probs=58.2
Q ss_pred CCCCCCCCCHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHhhcCCCCCCcceecccchhhHHHHhhh
Q 035594 85 LGSSRWNPTPEQLLALEEMYRRGTRTPSAEQIQHIASQLRRFGKIEGKNVFYWFQNHKARERQKRR 150 (336)
Q Consensus 85 ~rR~Rw~FT~EQLqiLEelF~~g~~YPs~eqRqeIA~eL~~~G~LtEsqVqvWFQNRRAReKRKrR 150 (336)
.++.|+.||++||.+||..|..++ ||+..+|++||..|+ |++.+|++||||||+|+||+.+
T Consensus 7 ~rr~Rt~ft~~q~~~Le~~F~~~~-yp~~~~r~~LA~~l~----l~~~qV~~WFqNrR~k~kk~~~ 67 (70)
T 2da2_A 7 GRSSRTRFTDYQLRVLQDFFDANA-YPKDDEFEQLSNLLN----LPTRVIVVWFQNARQKARKSGP 67 (70)
T ss_dssp SCCCCCCCCHHHHHHHHHHHHHCS-SCCHHHHHHHHHHSC----CCHHHHHHHHHHHHHHHCCCSS
T ss_pred CCCCCCCCCHHHHHHHHHHHHcCC-CcCHHHHHHHHHHhC----CCHHHhHHhhHhhhHHHhhccc
Confidence 589999999999999999999999 999999999999998 9999999999999999998654
No 12
>3a02_A Homeobox protein aristaless; homeodomain, developmental protein, DNA-binding, N gene regulation; 1.00A {Drosophila melanogaster} PDB: 3lnq_A 3cmy_A
Probab=99.79 E-value=2.4e-20 Score=134.56 Aligned_cols=59 Identities=25% Similarity=0.403 Sum_probs=50.4
Q ss_pred CCCCCCCHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHhhcCCCCCCcceecccchhhHHHHhhh
Q 035594 87 SSRWNPTPEQLLALEEMYRRGTRTPSAEQIQHIASQLRRFGKIEGKNVFYWFQNHKARERQKRR 150 (336)
Q Consensus 87 R~Rw~FT~EQLqiLEelF~~g~~YPs~eqRqeIA~eL~~~G~LtEsqVqvWFQNRRAReKRKrR 150 (336)
++|+.||++|+.+||..|..++ ||+..+|++||..|+ |++.+|++||||||||+|++.+
T Consensus 1 g~Rt~ft~~Q~~~Le~~F~~~~-yp~~~~r~~La~~l~----l~~~qV~~WFqNrR~k~rk~~k 59 (60)
T 3a02_A 1 GSHMTFTSFQLEELEKAFSRTH-YPDVFTREELAMKIG----LTEARIQVWFQNRRAKWRKQEK 59 (60)
T ss_dssp ----CCCHHHHHHHHHHHHHCS-SCCHHHHHHHHHHHT----SCHHHHHHHHHHHHHHHC----
T ss_pred CCCcccCHHHHHHHHHHHHcCC-CcCHHHHHHHHHHHC----cCHHHHHHHhhhhhhhhHhhcc
Confidence 3699999999999999999999 999999999999998 9999999999999999998765
No 13
>2da3_A Alpha-fetoprotein enhancer binding protein; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics; NMR {Homo sapiens}
Probab=99.79 E-value=2.6e-20 Score=140.08 Aligned_cols=61 Identities=34% Similarity=0.498 Sum_probs=58.1
Q ss_pred CCCCCCCCCHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHhhcCCCCCCcceecccchhhHHHHhhh
Q 035594 85 LGSSRWNPTPEQLLALEEMYRRGTRTPSAEQIQHIASQLRRFGKIEGKNVFYWFQNHKARERQKRR 150 (336)
Q Consensus 85 ~rR~Rw~FT~EQLqiLEelF~~g~~YPs~eqRqeIA~eL~~~G~LtEsqVqvWFQNRRAReKRKrR 150 (336)
.+|.|+.||++||.+||..|..++ ||+..+|++||.+|+ |++.+|++||||||+|+||+..
T Consensus 17 ~rr~Rt~ft~~Ql~~Le~~f~~~~-yp~~~~r~~La~~l~----l~~~qV~~WFqNrR~k~kk~~~ 77 (80)
T 2da3_A 17 DKRLRTTITPEQLEILYQKYLLDS-NPTRKMLDHIAHEVG----LKKRVVQVWFQNTRARERKSGP 77 (80)
T ss_dssp CTTCCSSCCTTTHHHHHHHHHHCS-SCCHHHHHHHHHHHT----SCHHHHHHHHHHHHHHHHSSCC
T ss_pred CCCCCCCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHC----cCHHHhHHHhHHHHHhHhhhcc
Confidence 589999999999999999999999 999999999999998 9999999999999999998653
No 14
>2da1_A Alpha-fetoprotein enhancer binding protein; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics; NMR {Homo sapiens}
Probab=99.79 E-value=2.4e-20 Score=137.81 Aligned_cols=61 Identities=30% Similarity=0.399 Sum_probs=58.2
Q ss_pred CCCCCCCCCHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHhhcCCCCCCcceecccchhhHHHHhhh
Q 035594 85 LGSSRWNPTPEQLLALEEMYRRGTRTPSAEQIQHIASQLRRFGKIEGKNVFYWFQNHKARERQKRR 150 (336)
Q Consensus 85 ~rR~Rw~FT~EQLqiLEelF~~g~~YPs~eqRqeIA~eL~~~G~LtEsqVqvWFQNRRAReKRKrR 150 (336)
.++.|+.||++||.+||..|..++ ||+..+|++||..|+ |++.+|++||||||+|+|++.+
T Consensus 7 ~rr~Rt~ft~~q~~~Le~~F~~~~-yp~~~~r~~LA~~l~----l~~~qV~~WFqNrR~k~kk~~~ 67 (70)
T 2da1_A 7 GKRPRTRITDDQLRVLRQYFDINN-SPSEEQIKEMADKSG----LPQKVIKHWFRNTLFKERQSGP 67 (70)
T ss_dssp CCSCSCCCCHHHHHHHHHHHHHCS-SCCTTHHHHHHHHHC----CCHHHHHHHHHHHHHHHHCCCC
T ss_pred CCCCCCCCCHHHHHHHHHHHHHCC-CCCHHHHHHHHHHhC----CCHHHHHHHhhhhhHHHhhhcc
Confidence 589999999999999999999999 999999999999998 9999999999999999998654
No 15
>1puf_A HOX-1.7, homeobox protein HOX-A9; homeodomian, protein-DNA complex, HOX hexapeptide, TALE homeodomain, homeodomain interaction; 1.90A {Mus musculus} SCOP: a.4.1.1 PDB: 1san_A
Probab=99.78 E-value=8e-20 Score=138.05 Aligned_cols=63 Identities=21% Similarity=0.307 Sum_probs=59.7
Q ss_pred CCCCCCCCCCHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHhhcCCCCCCcceecccchhhHHHHhhhh
Q 035594 84 PLGSSRWNPTPEQLLALEEMYRRGTRTPSAEQIQHIASQLRRFGKIEGKNVFYWFQNHKARERQKRRR 151 (336)
Q Consensus 84 ~~rR~Rw~FT~EQLqiLEelF~~g~~YPs~eqRqeIA~eL~~~G~LtEsqVqvWFQNRRAReKRKrRr 151 (336)
..++.|+.||.+|+.+||..|..++ ||+..+|++||..|+ |++.+|++||||||+|+|+..+.
T Consensus 12 ~~rr~Rt~ft~~Q~~~Le~~F~~~~-yp~~~~r~~LA~~l~----l~~~qV~vWFqNRR~k~kk~~k~ 74 (77)
T 1puf_A 12 STRKKRCPYTKHQTLELEKEFLFNM-YLTRDRRYEVARLLN----LTERQVKIWFQNRRMKMKKINKD 74 (77)
T ss_dssp TTSCCCCCCCHHHHHHHHHHHHHCS-SCCHHHHHHHHHHHT----CCHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCCHHHHHHHHHHHhccC-CCCHHHHHHHHHHHC----cCHHHHHHHHHHHHHHHHHhhhh
Confidence 3589999999999999999999999 999999999999998 99999999999999999997764
No 16
>2cra_A Homeobox protein HOX-B13; DNA-binding, transcription regulation, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.78 E-value=2.8e-20 Score=138.04 Aligned_cols=60 Identities=20% Similarity=0.349 Sum_probs=57.5
Q ss_pred CCCCCCCCCHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHhhcCCCCCCcceecccchhhHHHHhh
Q 035594 85 LGSSRWNPTPEQLLALEEMYRRGTRTPSAEQIQHIASQLRRFGKIEGKNVFYWFQNHKARERQKR 149 (336)
Q Consensus 85 ~rR~Rw~FT~EQLqiLEelF~~g~~YPs~eqRqeIA~eL~~~G~LtEsqVqvWFQNRRAReKRKr 149 (336)
.++.|+.||++||.+||..|..++ ||+..+|++||..|+ |++.+|++||||||+|+|+..
T Consensus 7 ~rr~Rt~ft~~Q~~~Le~~F~~~~-yp~~~~r~~LA~~l~----l~~~qV~~WFqNRR~k~kk~~ 66 (70)
T 2cra_A 7 GRKKRIPYSKGQLRELEREYAANK-FITKDKRRKISAATS----LSERQITIWFQNRRVKEKKSG 66 (70)
T ss_dssp CCCSCCCSCHHHHHHHHHHHHHCS-SCCHHHHHHHHHHTC----CCHHHHHHHHHHHHHTTTSSC
T ss_pred CCCCCCcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHC----CCHHHhhHhhHhHHHHhcccC
Confidence 589999999999999999999999 999999999999998 999999999999999998864
No 17
>2dmt_A Homeobox protein BARH-like 1; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.78 E-value=5.3e-20 Score=139.89 Aligned_cols=61 Identities=23% Similarity=0.259 Sum_probs=58.2
Q ss_pred CCCCCCCCCHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHhhcCCCCCCcceecccchhhHHHHhhh
Q 035594 85 LGSSRWNPTPEQLLALEEMYRRGTRTPSAEQIQHIASQLRRFGKIEGKNVFYWFQNHKARERQKRR 150 (336)
Q Consensus 85 ~rR~Rw~FT~EQLqiLEelF~~g~~YPs~eqRqeIA~eL~~~G~LtEsqVqvWFQNRRAReKRKrR 150 (336)
.+|.|+.||++||.+||..|..++ ||+..+|++||..|+ |++.+|++||||||||+||..+
T Consensus 17 ~rr~Rt~ft~~Q~~~Le~~F~~~~-yp~~~~r~~LA~~l~----L~~~qV~vWFqNRR~k~kk~~~ 77 (80)
T 2dmt_A 17 GRRSRTVFTELQLMGLEKRFEKQK-YLSTPDRIDLAESLG----LSQLQVKTWYQNRRMKWKKSGP 77 (80)
T ss_dssp CCCSCCCCCHHHHHHHHHHHHHCS-SCCHHHHHHHHHHHC----CCHHHHHHHHHHHHHHHSCCCS
T ss_pred CCCCCCCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHhC----CCHHHeeeccHHHHHHhhcccC
Confidence 589999999999999999999999 999999999999998 9999999999999999998653
No 18
>1ahd_P Antennapedia protein mutant; DNA binding protein/DNA; HET: DNA; NMR {Drosophila melanogaster} SCOP: a.4.1.1 PDB: 2hoa_A 1hom_A 1ftz_A
Probab=99.78 E-value=3.5e-20 Score=137.42 Aligned_cols=63 Identities=21% Similarity=0.279 Sum_probs=59.2
Q ss_pred CCCCCCCCCHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHhhcCCCCCCcceecccchhhHHHHhhhhh
Q 035594 85 LGSSRWNPTPEQLLALEEMYRRGTRTPSAEQIQHIASQLRRFGKIEGKNVFYWFQNHKARERQKRRRW 152 (336)
Q Consensus 85 ~rR~Rw~FT~EQLqiLEelF~~g~~YPs~eqRqeIA~eL~~~G~LtEsqVqvWFQNRRAReKRKrRr~ 152 (336)
.+|.|+.||++||.+||..|..++ ||+..+|.+||..|+ |++.+|++||||||||+|++.+..
T Consensus 2 ~rr~Rt~ft~~Q~~~Le~~F~~~~-yp~~~~r~~La~~l~----l~~~qV~vWFqNRR~k~kk~~~~~ 64 (68)
T 1ahd_P 2 RKRGRQTYTRYQTLELEKEFHFNR-YLTRRRRIEIAHALS----LTERQIKIWFQNRRMKWKKENKTK 64 (68)
T ss_dssp CSCTTCCCCHHHHHHHHHHHHHCS-SCCTTHHHHHHHHHT----CCHHHHHHHHHHHHHHHHHHSCCC
T ss_pred CCCCCCCcCHHHHHHHHHHHccCC-CCCHHHHHHHHHHHC----cCHhhhhHHhHHHHhHHhHhcccc
Confidence 478999999999999999999999 999999999999998 999999999999999999976543
No 19
>2kt0_A Nanog, homeobox protein nanog; homeodomain, structural genomics, protein structure initiative, PSI, center for eukaryotic structural genomics; NMR {Homo sapiens}
Probab=99.78 E-value=4.1e-20 Score=140.73 Aligned_cols=61 Identities=25% Similarity=0.389 Sum_probs=58.5
Q ss_pred CCCCCCCCCHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHhhcCCCCCCcceecccchhhHHHHhhh
Q 035594 85 LGSSRWNPTPEQLLALEEMYRRGTRTPSAEQIQHIASQLRRFGKIEGKNVFYWFQNHKARERQKRR 150 (336)
Q Consensus 85 ~rR~Rw~FT~EQLqiLEelF~~g~~YPs~eqRqeIA~eL~~~G~LtEsqVqvWFQNRRAReKRKrR 150 (336)
.+|.|+.||.+||.+||..|..++ ||+..+|.+||..|+ |++.+|++||||||||+||+++
T Consensus 22 ~rr~Rt~ft~~Q~~~Le~~F~~~~-yp~~~~r~~La~~l~----l~~~qV~vWFqNRR~k~kk~~k 82 (84)
T 2kt0_A 22 KQKTRTVFSSTQLCVLNDRFQRQK-YLSLQQMQELSNILN----LSYKQVKTWFQNQRMKSKRWQK 82 (84)
T ss_dssp SCCCSSCCCHHHHHHHHHHHHHSS-SCCHHHHHHHHHHTT----CCHHHHHHHHHHHHHTTTSCCC
T ss_pred CCCCCCCCCHHHHHHHHHHHHhCC-CCCHHHHHHHHHHcC----CCHHHHHHHHHHHHHHHHHHhh
Confidence 589999999999999999999999 999999999999998 9999999999999999998765
No 20
>2k40_A Homeobox expressed in ES cells 1; thermostable homeodomain variant, DNA binding protein, developmental protein, disease mutation, DNA-binding; NMR {Homo sapiens}
Probab=99.78 E-value=4.5e-20 Score=135.66 Aligned_cols=61 Identities=26% Similarity=0.483 Sum_probs=58.2
Q ss_pred CCCCCCCCHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHhhcCCCCCCcceecccchhhHHHHhhhh
Q 035594 86 GSSRWNPTPEQLLALEEMYRRGTRTPSAEQIQHIASQLRRFGKIEGKNVFYWFQNHKARERQKRRR 151 (336)
Q Consensus 86 rR~Rw~FT~EQLqiLEelF~~g~~YPs~eqRqeIA~eL~~~G~LtEsqVqvWFQNRRAReKRKrRr 151 (336)
+|+|+.||++|+.+||..|..++ ||+..+|++||..|+ |++.+|++||||||+|+|++.+.
T Consensus 2 rr~Rt~ft~~q~~~Le~~F~~~~-yp~~~~r~~La~~l~----l~~~qV~~WFqNrR~k~kr~~~~ 62 (67)
T 2k40_A 2 RRPRTAFTQNQIEVLENVFRVNC-YPGIDILEDLAQKLN----LELDRIQIWFQNRRAKLKRSHRE 62 (67)
T ss_dssp CCCSCCCCHHHHHHHHHHHTTCS-SCCHHHHHHHHHHHT----CCHHHHHHHHHHHHHHHHCSCCT
T ss_pred cCCCCCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHC----cCHHHhhHhhHhHHHHHhHhchh
Confidence 78999999999999999999999 999999999999998 99999999999999999987654
No 21
>1nk2_P Homeobox protein VND; homeodomain, DNA-binding protein, embryonic development, complex (homeodomain/DNA); HET: DNA; NMR {Drosophila melanogaster} SCOP: a.4.1.1 PDB: 1nk3_P* 1vnd_A 1qry_A
Probab=99.78 E-value=1.2e-19 Score=137.01 Aligned_cols=63 Identities=29% Similarity=0.385 Sum_probs=59.3
Q ss_pred CCCCCCCCCHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHhhcCCCCCCcceecccchhhHHHHhhhhh
Q 035594 85 LGSSRWNPTPEQLLALEEMYRRGTRTPSAEQIQHIASQLRRFGKIEGKNVFYWFQNHKARERQKRRRW 152 (336)
Q Consensus 85 ~rR~Rw~FT~EQLqiLEelF~~g~~YPs~eqRqeIA~eL~~~G~LtEsqVqvWFQNRRAReKRKrRr~ 152 (336)
.++.|+.||.+||.+||..|..++ ||+..+|.+||..|+ |++.+|++||||||+|+|++....
T Consensus 9 ~rr~Rt~ft~~Q~~~Le~~F~~~~-yp~~~~r~~La~~l~----l~~~qV~~WFqNRR~k~kr~~~~~ 71 (77)
T 1nk2_P 9 KRKRRVLFTKAQTYELERRFRQQR-YLSAPEREHLASLIR----LTPTQVKIWFQNHRYKTKRAQNEK 71 (77)
T ss_dssp CCCCCCCCCHHHHHHHHHHHHHCS-CCCHHHHHHHHHHTT----CCHHHHHHHHHHHHHHHHHHHHHT
T ss_pred CCCCCccCCHHHHHHHHHHHhhcC-CCCHHHHHHHHHHhC----CCHHHHHHHhHHhhcchhhhhccc
Confidence 588999999999999999999999 999999999999998 999999999999999999876643
No 22
>2e1o_A Homeobox protein PRH; DNA binding protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.78 E-value=8.5e-20 Score=135.46 Aligned_cols=61 Identities=21% Similarity=0.324 Sum_probs=58.0
Q ss_pred CCCCCCCCCHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHhhcCCCCCCcceecccchhhHHHHhhh
Q 035594 85 LGSSRWNPTPEQLLALEEMYRRGTRTPSAEQIQHIASQLRRFGKIEGKNVFYWFQNHKARERQKRR 150 (336)
Q Consensus 85 ~rR~Rw~FT~EQLqiLEelF~~g~~YPs~eqRqeIA~eL~~~G~LtEsqVqvWFQNRRAReKRKrR 150 (336)
.++.|+.||++|+.+||..|..++ ||+..+|++||..|+ |++.+|++||||||+|+|+...
T Consensus 7 ~~r~R~~ft~~q~~~Le~~F~~~~-yp~~~~r~~La~~l~----l~~~qV~~WFqNrR~k~rr~~~ 67 (70)
T 2e1o_A 7 GKGGQVRFSNDQTIELEKKFETQK-YLSPPERKRLAKMLQ----LSERQVKTWFQNRRAKWRRSGP 67 (70)
T ss_dssp CCCCCCCCCHHHHHHHHHHHHHCS-SCCHHHHHHHHHHTT----CCHHHHHHHHHHHHHHHHHHSC
T ss_pred CCCCCCCCCHHHHHHHHHHHHcCC-CcCHHHHHHHHHHHC----CCHHHhhHhhHhhHhhcCCCCC
Confidence 578999999999999999999999 999999999999998 9999999999999999998654
No 23
>2cuf_A FLJ21616 protein; homeobox domain, hepatocyte transcription factor, structural genomics, loop insertion, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.78 E-value=1.3e-19 Score=141.82 Aligned_cols=67 Identities=18% Similarity=0.345 Sum_probs=62.4
Q ss_pred CCCCCCCCCHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHh-----------hcCCCCCCcceecccchhhHHHHhhhhh
Q 035594 85 LGSSRWNPTPEQLLALEEMYRRGTRTPSAEQIQHIASQLR-----------RFGKIEGKNVFYWFQNHKARERQKRRRW 152 (336)
Q Consensus 85 ~rR~Rw~FT~EQLqiLEelF~~g~~YPs~eqRqeIA~eL~-----------~~G~LtEsqVqvWFQNRRAReKRKrRr~ 152 (336)
.+|.|+.||++||.+||..|..++ ||+..+|++||..|+ .++.|++.+|++||||||+|+|++.+..
T Consensus 7 ~rr~R~~ft~~ql~~Le~~F~~~~-yP~~~~r~~lA~~l~~~~~~~~~~~~~~~~ls~~qV~~WFqNRR~k~kr~~~~~ 84 (95)
T 2cuf_A 7 GRGSRFTWRKECLAVMESYFNENQ-YPDEAKREEIANACNAVIQKPGKKLSDLERVTSLKVYNWFANRRKEIKRRANIA 84 (95)
T ss_dssp CCCCSCCCCHHHHHHHHHHHHHCS-SCCHHHHHHHHHHHHHHHCCTTCCCCTTTCCCHHHHHHHHHHHHHHHHHHHHCC
T ss_pred CCCCCCcCCHHHHHHHHHHHhcCC-CCCHHHHHHHHHHHCchhhcccccccccCcCCHHHHHHHHHHHHHHHHHHhhcc
Confidence 589999999999999999999999 999999999999998 6666999999999999999999887763
No 24
>1fjl_A Paired protein; DNA-binding protein, paired BOX, transcription regulation; HET: DNA; 2.00A {Drosophila melanogaster} SCOP: a.4.1.1 PDB: 3a01_B
Probab=99.78 E-value=1e-19 Score=138.28 Aligned_cols=62 Identities=26% Similarity=0.384 Sum_probs=59.0
Q ss_pred CCCCCCCCCHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHhhcCCCCCCcceecccchhhHHHHhhhh
Q 035594 85 LGSSRWNPTPEQLLALEEMYRRGTRTPSAEQIQHIASQLRRFGKIEGKNVFYWFQNHKARERQKRRR 151 (336)
Q Consensus 85 ~rR~Rw~FT~EQLqiLEelF~~g~~YPs~eqRqeIA~eL~~~G~LtEsqVqvWFQNRRAReKRKrRr 151 (336)
.++.|+.||++|+.+||..|..++ ||+..+|.+||..|+ |++.+|++||||||+|+|++.+.
T Consensus 18 ~rr~Rt~ft~~Q~~~Le~~F~~~~-yp~~~~r~~LA~~l~----l~~~qV~~WFqNrR~k~rk~~~~ 79 (81)
T 1fjl_A 18 QRRSRTTFSASQLDELERAFERTQ-YPDIYTREELAQRTN----LTEARIQVWFQNRRARLRKQHTS 79 (81)
T ss_dssp CCCCCCCCCHHHHHHHHHHHHHCS-SCCHHHHHHHHHHHT----CCHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHC----cCHHHHHHHHHHHhhhhhhhccc
Confidence 589999999999999999999999 999999999999998 99999999999999999997653
No 25
>1yz8_P Pituitary homeobox 2; DNA binding protein, transcription/DNA complex; NMR {Homo sapiens} SCOP: a.4.1.1 PDB: 2l7f_P 2lkx_A* 2l7m_P
Probab=99.78 E-value=3.1e-20 Score=137.12 Aligned_cols=63 Identities=25% Similarity=0.358 Sum_probs=59.7
Q ss_pred CCCCCCCCCHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHhhcCCCCCCcceecccchhhHHHHhhhhh
Q 035594 85 LGSSRWNPTPEQLLALEEMYRRGTRTPSAEQIQHIASQLRRFGKIEGKNVFYWFQNHKARERQKRRRW 152 (336)
Q Consensus 85 ~rR~Rw~FT~EQLqiLEelF~~g~~YPs~eqRqeIA~eL~~~G~LtEsqVqvWFQNRRAReKRKrRr~ 152 (336)
.++.|+.||++|+.+||..|..++ ||+..+|.+||..|+ |++.+|++||||||+|+|++.+..
T Consensus 3 ~rr~Rt~ft~~Q~~~Le~~F~~~~-yp~~~~r~~La~~l~----l~~~qV~~WFqNrR~k~rk~~~~~ 65 (68)
T 1yz8_P 3 QRRQRTHFTSQQLQQLEATFQRNR-YPDMSTREEIAVWTN----LTEARVRVWFKNRRAKWRKREEFI 65 (68)
T ss_dssp SSCSCCCCCHHHHHHHHHHHTTCS-SCCTTTTTHHHHHTT----SCHHHHHHHHHHHHHHHHHHTTTS
T ss_pred CCCCCCCCCHHHHHHHHHHHHccC-CCCHHHHHHHHHHHC----cCHHHHHHHHHHHhHHHHHHhhcc
Confidence 489999999999999999999999 999999999999998 999999999999999999987654
No 26
>2djn_A Homeobox protein DLX-5; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.77 E-value=3.7e-20 Score=137.41 Aligned_cols=60 Identities=20% Similarity=0.282 Sum_probs=57.3
Q ss_pred CCCCCCCCCHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHhhcCCCCCCcceecccchhhHHHHhh
Q 035594 85 LGSSRWNPTPEQLLALEEMYRRGTRTPSAEQIQHIASQLRRFGKIEGKNVFYWFQNHKARERQKR 149 (336)
Q Consensus 85 ~rR~Rw~FT~EQLqiLEelF~~g~~YPs~eqRqeIA~eL~~~G~LtEsqVqvWFQNRRAReKRKr 149 (336)
.++.|+.||++||.+||..|..++ ||+..+|++||..|+ |++.+|++||||||+|+||..
T Consensus 7 ~rr~Rt~ft~~Q~~~Le~~F~~~~-yp~~~~r~~La~~l~----l~~~qV~~WFqNrR~k~kk~~ 66 (70)
T 2djn_A 7 GRKPRTIYSSFQLAALQRRFQKTQ-YLALPERAELAASLG----LTQTQVKIWFQNKRSKIKKSG 66 (70)
T ss_dssp CCCSSCSSCHHHHHHHHHHHTTCS-SCCHHHHHHHHHHSS----CCHHHHHHHHHHHHHTCSSSS
T ss_pred CCCCCCCCCHHHHHHHHHHHcCCC-CCCHHHHHHHHHHhC----CCHHHHHHHHHHHhhhhcccC
Confidence 589999999999999999999999 999999999999998 999999999999999998854
No 27
>1bw5_A ISL-1HD, insulin gene enhancer protein ISL-1; DNA-binding protein, homeodomain, LIM domain; NMR {Rattus norvegicus} SCOP: a.4.1.1
Probab=99.77 E-value=4.2e-20 Score=135.44 Aligned_cols=61 Identities=18% Similarity=0.325 Sum_probs=57.7
Q ss_pred CCCCCCCCCHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHhhcCCCCCCcceecccchhhHHHHhhh
Q 035594 85 LGSSRWNPTPEQLLALEEMYRRGTRTPSAEQIQHIASQLRRFGKIEGKNVFYWFQNHKARERQKRR 150 (336)
Q Consensus 85 ~rR~Rw~FT~EQLqiLEelF~~g~~YPs~eqRqeIA~eL~~~G~LtEsqVqvWFQNRRAReKRKrR 150 (336)
.+|.|+.||++|+.+||..|..++ ||+..++++||..|+ |++.+|++||||||+|+|++..
T Consensus 3 ~rr~Rt~ft~~q~~~Le~~F~~~~-yp~~~~r~~La~~l~----l~~~qV~~WFqNrR~k~kk~~~ 63 (66)
T 1bw5_A 3 TTRVRTVLNEKQLHTLRTCYAANP-RPDALMKEQLVEMTG----LSPRVIRVWFQNKRCKDKKRSI 63 (66)
T ss_dssp CSCCCCCCSHHHHHHHHHHHHHCS-CCCHHHHHHHHHHHT----SCHHHHHHHHHHHHHHCSSCCC
T ss_pred CCCCCCCCCHHHHHHHHHHHhcCC-CcCHHHHHHHHHHHC----cCHHHHHHHhHHHHHHHhHHhh
Confidence 478999999999999999999999 999999999999998 9999999999999999988643
No 28
>1ftt_A TTF-1 HD, thyroid transcription factor 1 homeodomain; DNA binding protein; NMR {Rattus norvegicus} SCOP: a.4.1.1
Probab=99.77 E-value=9.2e-20 Score=134.88 Aligned_cols=63 Identities=24% Similarity=0.369 Sum_probs=59.2
Q ss_pred CCCCCCCCCHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHhhcCCCCCCcceecccchhhHHHHhhhhh
Q 035594 85 LGSSRWNPTPEQLLALEEMYRRGTRTPSAEQIQHIASQLRRFGKIEGKNVFYWFQNHKARERQKRRRW 152 (336)
Q Consensus 85 ~rR~Rw~FT~EQLqiLEelF~~g~~YPs~eqRqeIA~eL~~~G~LtEsqVqvWFQNRRAReKRKrRr~ 152 (336)
.++.|+.||++|+.+||..|..++ ||+..+|.+||..|+ |++.+|++||||||+|+|++.+..
T Consensus 2 ~rr~Rt~ft~~Q~~~Le~~F~~~~-yp~~~~r~~LA~~l~----l~~~qV~~WFqNRR~k~kr~~~~~ 64 (68)
T 1ftt_A 2 RRKRRVLFSQAQVYELERRFKQQK-YLSAPEREHLASMIH----LTPTQVKIWFQNHRYKMKRQAKDK 64 (68)
T ss_dssp CSSSCSSCCHHHHHHHHHHHHHSS-SCCHHHHHHHHHHHT----SCHHHHHHHHHHHHHHHHHTTSCC
T ss_pred CCCCCCccCHHHHHHHHHHHHhCC-CCCHHHHHHHHHHhC----CCHHHhHHHhHHHhhhhhhhhhHh
Confidence 378999999999999999999999 999999999999998 999999999999999999976543
No 29
>2da4_A Hypothetical protein DKFZP686K21156; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.77 E-value=5.1e-20 Score=139.68 Aligned_cols=60 Identities=20% Similarity=0.327 Sum_probs=57.3
Q ss_pred CCCCCCCCCHHHHHHHHHHHhcC----CCCCCHHHHHHHHHHHhhcCCCCCCcceecccchhhHHHHhh
Q 035594 85 LGSSRWNPTPEQLLALEEMYRRG----TRTPSAEQIQHIASQLRRFGKIEGKNVFYWFQNHKARERQKR 149 (336)
Q Consensus 85 ~rR~Rw~FT~EQLqiLEelF~~g----~~YPs~eqRqeIA~eL~~~G~LtEsqVqvWFQNRRAReKRKr 149 (336)
.+|.||.||.+||.+||..|..+ + ||+..+|++||.+|+ |++.+|+|||||||+|+|+..
T Consensus 8 ~rr~Rt~ft~~Q~~~Le~~F~~~~~~~~-yp~~~~r~~La~~lg----L~~~qV~vWFqNrR~k~rk~~ 71 (80)
T 2da4_A 8 ALQDRTQFSDRDLATLKKYWDNGMTSLG-SVCREKIEAVATELN----VDCEIVRTWIGNRRRKYRLMG 71 (80)
T ss_dssp CCCSSCCCCHHHHHHHHHHHTTTTTCCS-HHHHHHHHHHHHHHT----CCHHHHHHHHHHHHHHHHHHT
T ss_pred CCCCCCCCCHHHHHHHHHHHHhCCCCCC-CcCHHHHHHHHHHhC----CCHHHhhHhHHHHHHHHhhcc
Confidence 58999999999999999999999 8 999999999999998 999999999999999998854
No 30
>2hi3_A Homeodomain-only protein; transcription; NMR {Mus musculus} SCOP: a.4.1.1
Probab=99.77 E-value=1.4e-19 Score=135.57 Aligned_cols=61 Identities=20% Similarity=0.320 Sum_probs=57.5
Q ss_pred CCCCCCCCHHHHHHHHHHHhc-CCCCCCHHHHHHHHHHHhhcCCCCCCcceecccchhhHHHHhhhh
Q 035594 86 GSSRWNPTPEQLLALEEMYRR-GTRTPSAEQIQHIASQLRRFGKIEGKNVFYWFQNHKARERQKRRR 151 (336)
Q Consensus 86 rR~Rw~FT~EQLqiLEelF~~-g~~YPs~eqRqeIA~eL~~~G~LtEsqVqvWFQNRRAReKRKrRr 151 (336)
++.|+.||++|+.+||..|.. ++ ||+..+|.+||..|+ |++.+|++||||||||+|++.+.
T Consensus 3 ~k~Rt~ft~~Q~~~Le~~F~~~~~-yp~~~~r~~LA~~~~----l~~~qV~~WFqNRR~k~rk~~~~ 64 (73)
T 2hi3_A 3 AQTVSGPTEDQVEILEYNFNKVNK-HPDPTTLCLIAAEAG----LTEEQTQKWFKQRLAEWRRSEGL 64 (73)
T ss_dssp CSCCSSCCHHHHHHHHHHHHHTTS-SCCHHHHHHHHHHHT----SCHHHHHHHHHHHHHHHHHHHTC
T ss_pred CCCCCCCCHHHHHHHHHHHHhcCC-CCCHHHHHHHHHHHC----cCHHHHHHHHHHHHHHHHHhccC
Confidence 688999999999999999995 88 999999999999998 99999999999999999997754
No 31
>1uhs_A HOP, homeodomain only protein; structural genomics, cardiac development, riken structural genomics/proteomics initiative, RSGI, transcription; NMR {Mus musculus} SCOP: a.4.1.1
Probab=99.77 E-value=1.5e-19 Score=134.81 Aligned_cols=61 Identities=18% Similarity=0.266 Sum_probs=56.9
Q ss_pred CCCCCCCCHHHHHHHHHHHhc-CCCCCCHHHHHHHHHHHhhcCCCCCCcceecccchhhHHHHhhhh
Q 035594 86 GSSRWNPTPEQLLALEEMYRR-GTRTPSAEQIQHIASQLRRFGKIEGKNVFYWFQNHKARERQKRRR 151 (336)
Q Consensus 86 rR~Rw~FT~EQLqiLEelF~~-g~~YPs~eqRqeIA~eL~~~G~LtEsqVqvWFQNRRAReKRKrRr 151 (336)
.+.|+.||++|+.+||..|.. ++ ||+..+|++||..|+ |++.+|++||||||||+|++.+.
T Consensus 2 ~k~Rt~ft~~Q~~~Le~~F~~~~~-yp~~~~r~~LA~~l~----l~~~qV~~WFqNRR~k~rk~~~~ 63 (72)
T 1uhs_A 2 SEGAATMTEDQVEILEYNFNKVNK-HPDPTTLCLIAAEAG----LTEEQTQKWFKQRLAEWRRSEGL 63 (72)
T ss_dssp CCCCCCCCHHHHHHHHHHHHSSCS-SCCHHHHHHHHHHHT----CCHHHHHHHHHHHHHHHHHHHCC
T ss_pred CCCCccCCHHHHHHHHHHHHccCC-CCCHHHHHHHHHHHC----cCHHHhhHHhHHHHHHHhhhccC
Confidence 468999999999999999997 88 999999999999998 99999999999999999997644
No 32
>2l7z_A Homeobox protein HOX-A13; gene regulation; NMR {Homo sapiens} PDB: 2ld5_A*
Probab=99.77 E-value=1.2e-19 Score=136.06 Aligned_cols=62 Identities=23% Similarity=0.340 Sum_probs=58.5
Q ss_pred CCCCCCCCCHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHhhcCCCCCCcceecccchhhHHHHhhhh
Q 035594 85 LGSSRWNPTPEQLLALEEMYRRGTRTPSAEQIQHIASQLRRFGKIEGKNVFYWFQNHKARERQKRRR 151 (336)
Q Consensus 85 ~rR~Rw~FT~EQLqiLEelF~~g~~YPs~eqRqeIA~eL~~~G~LtEsqVqvWFQNRRAReKRKrRr 151 (336)
.++.|+.||++|+.+||..|..++ ||+..+|.+||..|+ |++.+|++||||||+|+|+....
T Consensus 7 ~rr~Rt~ft~~Q~~~Le~~F~~~~-yp~~~~r~~LA~~l~----l~~~qV~vWFqNRR~k~kk~~~~ 68 (73)
T 2l7z_A 7 GRKKRVPYTKVQLKELEREYATNK-FITKDKRRRISATTN----LSERQVTIWFQNRRVKEKKVINK 68 (73)
T ss_dssp CCCCCCCSCHHHHHHHHHHHHHTS-CCCHHHHHHHHHHHT----SCSHHHHHHHHHHHHHHTTSSSS
T ss_pred CCCCCCCCCHHHHHHHHHHHhhCC-CcCHHHHHHHHHHHC----CCHHHHHHHHHHHhHHHHHHhcc
Confidence 489999999999999999999999 999999999999998 99999999999999999986544
No 33
>2r5y_A Homeotic protein sex combs reduced; homeodomain; HET: DNA; 2.60A {Drosophila melanogaster} PDB: 2r5z_A*
Probab=99.76 E-value=1.1e-19 Score=140.22 Aligned_cols=60 Identities=22% Similarity=0.302 Sum_probs=55.4
Q ss_pred CCCCCCCCCHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHhhcCCCCCCcceecccchhhHHHHhh
Q 035594 85 LGSSRWNPTPEQLLALEEMYRRGTRTPSAEQIQHIASQLRRFGKIEGKNVFYWFQNHKARERQKR 149 (336)
Q Consensus 85 ~rR~Rw~FT~EQLqiLEelF~~g~~YPs~eqRqeIA~eL~~~G~LtEsqVqvWFQNRRAReKRKr 149 (336)
.+|.|+.||.+||.+||..|..+. ||+..+|++||..|+ |++.+|++||||||||+||+.
T Consensus 28 ~rr~Rt~ft~~Ql~~Le~~F~~~~-yp~~~~r~~La~~l~----l~~~qV~vWFqNRR~k~kk~~ 87 (88)
T 2r5y_A 28 TKRQRTSYTRYQTLELEKEFHFNR-YLTRRRRIEIAHALS----LTERQIKIWFQNRRMKWKKEH 87 (88)
T ss_dssp ---CCCCCCHHHHHHHHHHHTTCS-SCCHHHHHHHHHHTT----CCHHHHHHHHHHHHHHHHTTC
T ss_pred CCCCCCCcCHHHHHHHHHHHhccC-CCCHHHHHHHHHHhC----cCHHHhhHHhHHHHHHhHhhc
Confidence 589999999999999999999999 999999999999998 999999999999999999865
No 34
>1b8i_A Ultrabithorax, protein (ultrabithorax homeotic protein IV); DNA binding, homeodomain, homeotic proteins, development, specificity; HET: DNA; 2.40A {Drosophila melanogaster} SCOP: a.4.1.1 PDB: 9ant_A*
Probab=99.76 E-value=1.3e-19 Score=138.57 Aligned_cols=61 Identities=20% Similarity=0.303 Sum_probs=54.5
Q ss_pred CCCCCCCCCHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHhhcCCCCCCcceecccchhhHHHHhhh
Q 035594 85 LGSSRWNPTPEQLLALEEMYRRGTRTPSAEQIQHIASQLRRFGKIEGKNVFYWFQNHKARERQKRR 150 (336)
Q Consensus 85 ~rR~Rw~FT~EQLqiLEelF~~g~~YPs~eqRqeIA~eL~~~G~LtEsqVqvWFQNRRAReKRKrR 150 (336)
.+|.|+.||.+||.+||..|..++ ||+..+|++||..|+ |++.+|++||||||+|+||+.+
T Consensus 20 ~rr~Rt~ft~~Ql~~Le~~F~~~~-yp~~~~r~~LA~~l~----l~~~qV~vWFqNRR~k~kk~~~ 80 (81)
T 1b8i_A 20 RRRGRQTYTRYQTLELEKEFHTNH-YLTRRRRIEMAHALS----LTERQIKIWFQNRRMKLKKEIQ 80 (81)
T ss_dssp ----CCCCCHHHHHHHHHHHHHCS-SCCHHHHHHHHHHHT----CCHHHHHHHHHHHHHHHHTTC-
T ss_pred CCCCCcccCHHHHHHHHHHHhcCC-CCCHHHHHHHHHHhC----CCHHHHHHHhHHhhhhhhhhcc
Confidence 488999999999999999999999 999999999999998 9999999999999999998654
No 35
>1b72_A Protein (homeobox protein HOX-B1); homeodomain, DNA, complex, DNA-binding protein, protein/DNA complex; HET: DNA; 2.35A {Homo sapiens} SCOP: a.4.1.1
Probab=99.76 E-value=1.8e-19 Score=141.53 Aligned_cols=62 Identities=27% Similarity=0.395 Sum_probs=56.2
Q ss_pred CCCCCCCCCCHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHhhcCCCCCCcceecccchhhHHHHhhh
Q 035594 84 PLGSSRWNPTPEQLLALEEMYRRGTRTPSAEQIQHIASQLRRFGKIEGKNVFYWFQNHKARERQKRR 150 (336)
Q Consensus 84 ~~rR~Rw~FT~EQLqiLEelF~~g~~YPs~eqRqeIA~eL~~~G~LtEsqVqvWFQNRRAReKRKrR 150 (336)
..++.|+.||.+||.+||..|..+. ||+..+|++||..|+ |++.+|++||||||||+|++.+
T Consensus 33 ~~rr~Rt~ft~~Ql~~Le~~F~~~~-yp~~~~r~~LA~~l~----l~~~qV~vWFqNRR~k~kk~~~ 94 (97)
T 1b72_A 33 SPSGLRTNFTTRQLTELEKEFHFNK-YLSRARRVEIAATLE----LNETQVKIWFQNRRMKQKKRER 94 (97)
T ss_dssp ----CCCCCCHHHHHHHHHHHTTCS-SCCHHHHHHHHHHHT----CCHHHHHHHHHHHHHHHHHHHT
T ss_pred CCCCCCcCcCHHHHHHHHHHHhccC-CCCHHHHHHHHHHhC----CCHHHhHHHHHHHhHHHhHHhc
Confidence 4689999999999999999999999 999999999999998 9999999999999999998765
No 36
>3rkq_A Homeobox protein NKX-2.5; helix-turn-helix, DNA binding, nucleus, transcription-DNA CO; 1.70A {Homo sapiens}
Probab=99.76 E-value=1.9e-19 Score=127.33 Aligned_cols=57 Identities=25% Similarity=0.378 Sum_probs=54.6
Q ss_pred CCCCCCCCCHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHhhcCCCCCCcceecccchhhHHH
Q 035594 85 LGSSRWNPTPEQLLALEEMYRRGTRTPSAEQIQHIASQLRRFGKIEGKNVFYWFQNHKARER 146 (336)
Q Consensus 85 ~rR~Rw~FT~EQLqiLEelF~~g~~YPs~eqRqeIA~eL~~~G~LtEsqVqvWFQNRRAReK 146 (336)
.++.|+.||++|+.+||..|..++ ||+..++.+||..|+ |++.+|++||||||+|+|
T Consensus 2 ~rr~Rt~~t~~q~~~Le~~F~~~~-yp~~~~r~~La~~l~----l~~~qV~~WFqNrR~k~k 58 (58)
T 3rkq_A 2 RRKPRVLFSQAQVYELERRFKQQR-YLSAPERDQLASVLK----LTSTQVKIWFQNRRYKSK 58 (58)
T ss_dssp CCCCCCCCCHHHHHHHHHHHTTCS-SCCHHHHHHHHHHHT----CCHHHHHHHHHHHHHHHC
T ss_pred cCCCCCCcCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHhC----cCHHHHHHhhHHhhccCC
Confidence 478999999999999999999999 999999999999998 999999999999999985
No 37
>3a01_A Homeodomain-containing protein; homeodomain, protein-DNA complex, DNA-binding, homeobox, NUC developmental protein; 2.70A {Drosophila melanogaster}
Probab=99.76 E-value=2.3e-19 Score=140.77 Aligned_cols=63 Identities=21% Similarity=0.284 Sum_probs=60.2
Q ss_pred CCCCCCCCCHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHhhcCCCCCCcceecccchhhHHHHhhhhh
Q 035594 85 LGSSRWNPTPEQLLALEEMYRRGTRTPSAEQIQHIASQLRRFGKIEGKNVFYWFQNHKARERQKRRRW 152 (336)
Q Consensus 85 ~rR~Rw~FT~EQLqiLEelF~~g~~YPs~eqRqeIA~eL~~~G~LtEsqVqvWFQNRRAReKRKrRr~ 152 (336)
.++.|+.||.+|+.+||..|..++ ||+..+|.+||..|+ |++.+|++||||||+|+|++.+..
T Consensus 17 ~rr~Rt~ft~~Ql~~Le~~F~~~~-yp~~~~r~~LA~~l~----L~~~qV~vWFqNRR~k~kr~~~~~ 79 (93)
T 3a01_A 17 RKKPRTSFTRIQVAELEKRFHKQK-YLASAERAALARGLK----MTDAQVKTWFQNRRTKWRRQTAEE 79 (93)
T ss_dssp CCCCCCCCCHHHHHHHHHHHHHCS-CCCHHHHHHHHHTTT----CCHHHHHHHHHHHHHHHHHHHTCC
T ss_pred CCCCCcCCCHHHHHHHHHHHHcCC-CcCHHHHHHHHHHhC----CChhhcccccHhhhhhhhhhhHHH
Confidence 489999999999999999999999 999999999999998 999999999999999999987766
No 38
>2m0c_A Homeobox protein aristaless-like 4; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}
Probab=99.76 E-value=1.6e-19 Score=133.99 Aligned_cols=62 Identities=26% Similarity=0.376 Sum_probs=59.1
Q ss_pred CCCCCCCCCHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHhhcCCCCCCcceecccchhhHHHHhhhh
Q 035594 85 LGSSRWNPTPEQLLALEEMYRRGTRTPSAEQIQHIASQLRRFGKIEGKNVFYWFQNHKARERQKRRR 151 (336)
Q Consensus 85 ~rR~Rw~FT~EQLqiLEelF~~g~~YPs~eqRqeIA~eL~~~G~LtEsqVqvWFQNRRAReKRKrRr 151 (336)
.++.|+.||++|+.+||..|..++ ||+..+|.+||..|+ |++.+|++||||||+|+|++.|.
T Consensus 9 ~rr~Rt~ft~~q~~~Le~~F~~~~-yp~~~~r~~La~~l~----l~~~qV~~WFqNrR~k~kk~~r~ 70 (75)
T 2m0c_A 9 KRRNRTTFTSYQLEELEKVFQKTH-YPDVYAREQLAMRTD----LTEARVQVWFQNRRAKWRKRERF 70 (75)
T ss_dssp CCSCSCSSCHHHHHHHHHHHHHCS-SCCHHHHHHHHHHHT----CCHHHHHHHHHHHHHHHTCCCCC
T ss_pred CCCCCCCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHhC----CCHHHHHHHhHHHHHHHHHHHhh
Confidence 589999999999999999999999 999999999999998 99999999999999999997665
No 39
>3a03_A T-cell leukemia homeobox protein 2; homeodomain, developmental protein, DNA-binding, N gene regulation; 1.54A {Homo sapiens}
Probab=99.75 E-value=2.7e-19 Score=128.05 Aligned_cols=54 Identities=26% Similarity=0.401 Sum_probs=50.8
Q ss_pred CCCCHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHhhcCCCCCCcceecccchhhHHHHh
Q 035594 90 WNPTPEQLLALEEMYRRGTRTPSAEQIQHIASQLRRFGKIEGKNVFYWFQNHKARERQK 148 (336)
Q Consensus 90 w~FT~EQLqiLEelF~~g~~YPs~eqRqeIA~eL~~~G~LtEsqVqvWFQNRRAReKRK 148 (336)
|.||++|+.+||..|..++ ||+..+|.+||..|+ |++.+|++||||||+|+||+
T Consensus 2 T~ft~~Ql~~Le~~F~~~~-yp~~~~r~~LA~~l~----l~~~qV~~WFqNRR~k~kr~ 55 (56)
T 3a03_A 2 TSFSRSQVLELERRFLRQK-YLASAERAALAKALR----MTDAQVKTWFQNRRTKWRRQ 55 (56)
T ss_dssp --CCHHHHHHHHHHHHHCS-SCCHHHHHHHHHHHT----CCHHHHHHHHHHHHHHHHHH
T ss_pred CccCHHHHHHHHHHHHhcC-CcCHHHHHHHHHHhC----cCHHHhhHhhHHhhhhhccc
Confidence 5799999999999999999 999999999999998 99999999999999999985
No 40
>1wh5_A ZF-HD homeobox family protein; structural genomics, zinc finger homeobox family protein, riken structural genomics/proteomics initiative; NMR {Arabidopsis thaliana} SCOP: a.4.1.1
Probab=99.75 E-value=2e-19 Score=138.50 Aligned_cols=59 Identities=19% Similarity=0.162 Sum_probs=56.1
Q ss_pred CCCCCCCCCCHHHHHHHHHHHhc----CCCCCCHHHHHHHHHHHhhcCCCCCCcceecccchhhHHHH
Q 035594 84 PLGSSRWNPTPEQLLALEEMYRR----GTRTPSAEQIQHIASQLRRFGKIEGKNVFYWFQNHKARERQ 147 (336)
Q Consensus 84 ~~rR~Rw~FT~EQLqiLEelF~~----g~~YPs~eqRqeIA~eL~~~G~LtEsqVqvWFQNRRAReKR 147 (336)
..+|.|+.||.+||.+||..|.. .+ ||+..+|++||..|+ |++.+|+|||||||||.|+
T Consensus 16 ~~rR~Rt~ft~~Ql~~Le~~f~~~~~~~~-yp~~~~r~~La~~lg----L~~~~VkvWFqNrRaK~~~ 78 (80)
T 1wh5_A 16 IRKRHRTKFTAEQKERMLALAERIGWRIQ-RQDDEVIQRFCQETG----VPRQVLKVWLHNNKHSGPS 78 (80)
T ss_dssp CSCCCSCCCCHHHHHHHHHHHHHHTSCCC-TTTHHHHHHHHHHSC----CCHHHHHHHHHHHSSSSSC
T ss_pred CCCCCCccCCHHHHHHHHHHHHhccCcCC-CcCHHHHHHHHHHhC----CCcccccCCccccCcCCCC
Confidence 36999999999999999999999 88 999999999999998 9999999999999999875
No 41
>2ly9_A Zinc fingers and homeoboxes protein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}
Probab=99.75 E-value=2.6e-19 Score=133.51 Aligned_cols=62 Identities=19% Similarity=0.297 Sum_probs=58.3
Q ss_pred CCCCCCCCCHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHhhcCCCCCCcceecccchhhHHHHhhhh
Q 035594 85 LGSSRWNPTPEQLLALEEMYRRGTRTPSAEQIQHIASQLRRFGKIEGKNVFYWFQNHKARERQKRRR 151 (336)
Q Consensus 85 ~rR~Rw~FT~EQLqiLEelF~~g~~YPs~eqRqeIA~eL~~~G~LtEsqVqvWFQNRRAReKRKrRr 151 (336)
.++.|+.||++|+.+||..|..++ ||+..+|++||..|+ |++.+|++||||||+|+||++..
T Consensus 6 ~~~~Rt~ft~~Ql~~Le~~F~~~~-yp~~~~r~~La~~l~----l~~~qV~~WFqNrR~k~kk~~~~ 67 (74)
T 2ly9_A 6 SFGIRAKKTKEQLAELKVSYLKNQ-FPHDSEIIRLMKITG----LTKGEIKKWFSDTRYNQRNSKSN 67 (74)
T ss_dssp CCCTTCCCCHHHHHHHHHHHHHCS-SCCHHHHHHHHHHHC----CCHHHHHHHHHHHHHHTTTTTCS
T ss_pred CCCCCcCCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHhC----cCHHHeeeCChhHhHHHHhhCcC
Confidence 488999999999999999999999 999999999999998 99999999999999999886543
No 42
>2dn0_A Zinc fingers and homeoboxes protein 3; triple homeobox 1 protein, KIAA0395, TIX1, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.75 E-value=1.7e-19 Score=136.03 Aligned_cols=63 Identities=19% Similarity=0.340 Sum_probs=58.6
Q ss_pred CCCCCCCCCHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHhhcCCCCCCcceecccchhhHHHHhhhhh
Q 035594 85 LGSSRWNPTPEQLLALEEMYRRGTRTPSAEQIQHIASQLRRFGKIEGKNVFYWFQNHKARERQKRRRW 152 (336)
Q Consensus 85 ~rR~Rw~FT~EQLqiLEelF~~g~~YPs~eqRqeIA~eL~~~G~LtEsqVqvWFQNRRAReKRKrRr~ 152 (336)
+.+.|+.||++||.+||..|..++ ||+..+|++||..|+ |++.+|++||||||+|+|++++..
T Consensus 8 ~~~~R~~ft~~Ql~~Le~~F~~~~-yp~~~~r~~La~~~~----l~~~qV~~WFqNrR~k~kk~~~~~ 70 (76)
T 2dn0_A 8 ASIYKNKKSHEQLSALKGSFCRNQ-FPGQSEVEHLTKVTG----LSTREVRKWFSDRRYHCRNLKGSR 70 (76)
T ss_dssp CCCCCCCCCHHHHHHHHHHHHHSS-SCCSHHHHHHHHHHC----CCHHHHHHHHHHHHHHSSSCCSSS
T ss_pred CCCCCccCCHHHHHHHHHHHhcCC-CcCHHHHHHHHHHhC----CChHHhhHHhHHHhHHHHHhcccC
Confidence 466799999999999999999999 999999999999998 999999999999999999876553
No 43
>1puf_B PRE-B-cell leukemia transcription factor-1; homeodomian, protein-DNA complex, HOX hexapeptide, TALE homeodomain, homeodomain interaction; 1.90A {Homo sapiens} SCOP: a.4.1.1 PDB: 1b8i_B* 2r5y_B* 2r5z_B*
Probab=99.74 E-value=6.4e-19 Score=131.36 Aligned_cols=63 Identities=22% Similarity=0.326 Sum_probs=58.9
Q ss_pred CCCCCCCCCHHHHHHHHHHH---hcCCCCCCHHHHHHHHHHHhhcCCCCCCcceecccchhhHHHHhhhhh
Q 035594 85 LGSSRWNPTPEQLLALEEMY---RRGTRTPSAEQIQHIASQLRRFGKIEGKNVFYWFQNHKARERQKRRRW 152 (336)
Q Consensus 85 ~rR~Rw~FT~EQLqiLEelF---~~g~~YPs~eqRqeIA~eL~~~G~LtEsqVqvWFQNRRAReKRKrRr~ 152 (336)
++|.|+.||++|+.+||..| ..++ ||+..++.+||..|+ |++.+|++||||||+|+|++....
T Consensus 1 ~rr~R~~ft~~q~~~Le~~f~~~~~~~-yP~~~~r~~La~~~~----L~~~qV~~WFqNrR~r~kk~~~~~ 66 (73)
T 1puf_B 1 ARRKRRNFNKQATEILNEYFYSHLSNP-YPSEEAKEELAKKCG----ITVSQVSNWFGNKRIRYKKNIGKF 66 (73)
T ss_dssp CCCCCCCCCHHHHHHHHHHHHHTTTSC-CCCHHHHHHHHHHHT----SCHHHHHHHHHHHHHHHHHCTTTT
T ss_pred CCCCCCcCCHHHHHHHHHHHHHhccCC-CcCHHHHHHHHHHHC----cCHHHHHHHHHHHHhhcccccccc
Confidence 37899999999999999999 7788 999999999999998 999999999999999999877665
No 44
>2da5_A Zinc fingers and homeoboxes protein 3; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.74 E-value=4.9e-19 Score=133.69 Aligned_cols=61 Identities=20% Similarity=0.434 Sum_probs=57.1
Q ss_pred CCCCCCCCHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHhhcCCCCCCcceecccchhhHHHHhhhh
Q 035594 86 GSSRWNPTPEQLLALEEMYRRGTRTPSAEQIQHIASQLRRFGKIEGKNVFYWFQNHKARERQKRRR 151 (336)
Q Consensus 86 rR~Rw~FT~EQLqiLEelF~~g~~YPs~eqRqeIA~eL~~~G~LtEsqVqvWFQNRRAReKRKrRr 151 (336)
+++|..||++||.+||..|..++ ||+..+|.+||..|+ |++.+|++||||||||+|++.+.
T Consensus 8 ~~kr~~~t~~Ql~~Le~~F~~~~-yp~~~~r~~LA~~l~----l~~~qV~~WFqNRR~k~kk~~~~ 68 (75)
T 2da5_A 8 PTKYKERAPEQLRALESSFAQNP-LPLDEELDRLRSETK----MTRREIDSWFSERRKKVNAEETK 68 (75)
T ss_dssp SCCCCCCCHHHHHHHHHHHHHCS-SCCHHHHHHHHHHHC----CCHHHHHHHHHHHTTHHHHSSCS
T ss_pred CCCCccCCHHHHHHHHHHHhccC-CCCHHHHHHHHHHhC----CCHHHhhHhhHHHHHHHHHhhhc
Confidence 56788899999999999999999 999999999999998 99999999999999999987654
No 45
>2da6_A Hepatocyte nuclear factor 1-beta; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.74 E-value=8.6e-19 Score=143.31 Aligned_cols=67 Identities=24% Similarity=0.446 Sum_probs=61.6
Q ss_pred CCCCCCCCCHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHhh-------------cC----CCCCCcceecccchhhHHHH
Q 035594 85 LGSSRWNPTPEQLLALEEMYRRGTRTPSAEQIQHIASQLRR-------------FG----KIEGKNVFYWFQNHKARERQ 147 (336)
Q Consensus 85 ~rR~Rw~FT~EQLqiLEelF~~g~~YPs~eqRqeIA~eL~~-------------~G----~LtEsqVqvWFQNRRAReKR 147 (336)
.+|.|+.||++||.+||+.|..++ ||+.++|++||..|+. || .|+|.+|+|||||||+|+|+
T Consensus 6 ~Rr~Rt~ft~~ql~~Le~~F~~~~-yPs~~~Re~LA~~ln~~~c~q~g~~~~~~~GL~~~~lte~~V~~WFqNRR~k~kr 84 (102)
T 2da6_A 6 SGRNRFKWGPASQQILYQAYDRQK-NPSKEEREALVEECNRAECLQRGVSPSKAHGLGSNLVTEVRVYNWFANRRKEEAF 84 (102)
T ss_dssp SCCCCCCCCHHHHHHHHHHHTTCS-SCCHHHHHHHHHHHHHHHHHHTSCCTTCGGGGGGGCCCHHHHHHHHHHHHHHHHH
T ss_pred CCCCCccCCHHHHHHHHHHHcCCC-CCCHHHHHHHHHHHHHhhhcccccccchhcccccccccccceeeeecchHHHHHH
Confidence 589999999999999999999999 9999999999999953 34 79999999999999999998
Q ss_pred hhhhh
Q 035594 148 KRRRW 152 (336)
Q Consensus 148 KrRr~ 152 (336)
+.+..
T Consensus 85 ~~~~~ 89 (102)
T 2da6_A 85 RQKLA 89 (102)
T ss_dssp HHHHH
T ss_pred hhHhh
Confidence 77665
No 46
>1akh_A Protein (mating-type protein A-1); complex (TWO DNA-binding proteins/DNA), complex, DNA- binding protein, DNA; HET: DNA; 2.50A {Saccharomyces cerevisiae} SCOP: a.4.1.1 PDB: 1f43_A 1yrn_A*
Probab=99.74 E-value=3.9e-19 Score=127.98 Aligned_cols=57 Identities=23% Similarity=0.396 Sum_probs=48.2
Q ss_pred CCCCCCCCCHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHhhcCCCCCCcceecccchhhHHH
Q 035594 85 LGSSRWNPTPEQLLALEEMYRRGTRTPSAEQIQHIASQLRRFGKIEGKNVFYWFQNHKARER 146 (336)
Q Consensus 85 ~rR~Rw~FT~EQLqiLEelF~~g~~YPs~eqRqeIA~eL~~~G~LtEsqVqvWFQNRRAReK 146 (336)
.++.|+.||++|+.+||..|..++ ||+..++++||..|+ |++.+|++||||||+|+|
T Consensus 5 ~rr~Rt~ft~~q~~~Le~~f~~~~-yp~~~~r~~La~~~~----l~~~qV~~WFqNrR~k~k 61 (61)
T 1akh_A 5 SPKGKSSISPQARAFLEEVFRRKQ-SLNSKEKEEVAKKCG----ITPLQVRVWFINKRMRSK 61 (61)
T ss_dssp -------CCHHHHHHHHHHHHHCS-SCCHHHHHHHHHHHT----SCHHHHHHHHHHHHHHC-
T ss_pred CCCCCCCCCHHHHHHHHHHHHhCC-CcCHHHHHHHHHHHC----cCHHHHHHHHHHHHhccC
Confidence 489999999999999999999999 999999999999998 999999999999999975
No 47
>2ecc_A Homeobox and leucine zipper protein homez; homeobox domain, transcription factor, leucine zipper- containing factor, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.73 E-value=9.3e-19 Score=136.31 Aligned_cols=63 Identities=21% Similarity=0.360 Sum_probs=59.0
Q ss_pred CCCCCCCCCHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHhhcCCCCCCcceecccchhhHHHHhhhhh
Q 035594 85 LGSSRWNPTPEQLLALEEMYRRGTRTPSAEQIQHIASQLRRFGKIEGKNVFYWFQNHKARERQKRRRW 152 (336)
Q Consensus 85 ~rR~Rw~FT~EQLqiLEelF~~g~~YPs~eqRqeIA~eL~~~G~LtEsqVqvWFQNRRAReKRKrRr~ 152 (336)
..+.|..||++||.+||+.|..++ ||+.++|++||..|+ |++.+|++||||||+|+|+.....
T Consensus 3 ~g~~r~kfT~~Ql~~Le~~F~~~~-YPs~~er~~LA~~tg----Lte~qIkvWFqNrR~k~Kk~~l~w 65 (76)
T 2ecc_A 3 SGSSGKRKTKEQLAILKSFFLQCQ-WARREDYQKLEQITG----LPRPEIIQWFGDTRYALKHGQLKW 65 (76)
T ss_dssp CSCCCCCCCHHHHHHHHHHHHHCS-SCCHHHHHHHHHHTC----CCHHHHHHHHHHHHHHHHHTCCSS
T ss_pred CCCCCCCCCHHHHHHHHHHHHHCC-CCCHHHHHHHHHHHC----cCHHHhhHHhHhhHHHHHHHHHHH
Confidence 467888999999999999999999 999999999999998 999999999999999999876665
No 48
>1b72_B Protein (PBX1); homeodomain, DNA, complex, DNA-binding protein, protein/DNA complex; HET: DNA; 2.35A {Homo sapiens} SCOP: a.4.1.1 PDB: 1lfu_P
Probab=99.72 E-value=1.9e-18 Score=132.23 Aligned_cols=63 Identities=22% Similarity=0.326 Sum_probs=57.9
Q ss_pred CCCCCCCCCHHHHHHHHHHH---hcCCCCCCHHHHHHHHHHHhhcCCCCCCcceecccchhhHHHHhhhhh
Q 035594 85 LGSSRWNPTPEQLLALEEMY---RRGTRTPSAEQIQHIASQLRRFGKIEGKNVFYWFQNHKARERQKRRRW 152 (336)
Q Consensus 85 ~rR~Rw~FT~EQLqiLEelF---~~g~~YPs~eqRqeIA~eL~~~G~LtEsqVqvWFQNRRAReKRKrRr~ 152 (336)
++|.|+.||.+|+.+||..| ..++ ||+.++|++||..|+ |++.+|++||||||+|+|++....
T Consensus 1 ~rr~R~~ft~~q~~~Le~~f~~h~~~~-yp~~~~r~~La~~~~----l~~~qV~~WFqNrR~r~kk~~~~~ 66 (87)
T 1b72_B 1 ARRKRRNFNKQATEILNEYFYSHLSNP-YPSEEAKEELAKKCG----ITVSQVSNWFGNKRIRYKKNIGKF 66 (87)
T ss_dssp --CCCCCCCHHHHHHHHHHHHTTTTSC-CCCHHHHHHHHHHHT----SCHHHHHHHHHHHHHHHHHCGGGG
T ss_pred CCCCCCCCCHHHHHHHHHHHHHhccCC-CCCHHHHHHHHHHHC----cCHHHHHHHHHHHHHHhhhccccc
Confidence 37899999999999999999 7778 999999999999998 999999999999999999987666
No 49
>1wh7_A ZF-HD homeobox family protein; homeobox domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: a.4.1.1
Probab=99.71 E-value=7.6e-19 Score=135.96 Aligned_cols=57 Identities=12% Similarity=0.144 Sum_probs=54.3
Q ss_pred CCCCCCCCCHHHHHHHHHHHhc-----CCCCCCHHHHHHHHHHHhhcCCCCCCcceecccchhhHHHH
Q 035594 85 LGSSRWNPTPEQLLALEEMYRR-----GTRTPSAEQIQHIASQLRRFGKIEGKNVFYWFQNHKARERQ 147 (336)
Q Consensus 85 ~rR~Rw~FT~EQLqiLEelF~~-----g~~YPs~eqRqeIA~eL~~~G~LtEsqVqvWFQNRRAReKR 147 (336)
.+|.||.||.+||.+|| .|.. ++ ||+..+|++||.+|+ |++.+|+|||||||||+|+
T Consensus 17 ~rR~Rt~ft~~Ql~~Le-~F~~~~~w~~~-yp~~~~r~~La~~lg----L~e~qVkvWFqNrR~k~~~ 78 (80)
T 1wh7_A 17 TKRFRTKFTAEQKEKML-AFAERLGWRIQ-KHDDVAVEQFCAETG----VRRQVLKIWMHNNKNSGPS 78 (80)
T ss_dssp SSCCCCCCCHHHHHHHH-HHHHHHTSCCC-SSTTHHHHHHHHHSC----CCHHHHHHHHHTTSCCSCC
T ss_pred CCCCCccCCHHHHHHHH-HHHHHcCcCCC-CCCHHHHHHHHHHhC----cCcCcccccccccccCCCC
Confidence 58999999999999999 7999 88 999999999999998 9999999999999999875
No 50
>1k61_A Mating-type protein alpha-2; protein-DNA complex, homeodomain, hoogsteen base PAIR, transcription/DNA complex; HET: 5IU; 2.10A {Synthetic} SCOP: a.4.1.1
Probab=99.71 E-value=2.5e-18 Score=123.70 Aligned_cols=56 Identities=13% Similarity=0.270 Sum_probs=53.2
Q ss_pred CCCCCCHHHHHHHHHHHhc---CCCCCCHHHHHHHHHHHhhcCCCCCCcceecccchhhHHHHh
Q 035594 88 SRWNPTPEQLLALEEMYRR---GTRTPSAEQIQHIASQLRRFGKIEGKNVFYWFQNHKARERQK 148 (336)
Q Consensus 88 ~Rw~FT~EQLqiLEelF~~---g~~YPs~eqRqeIA~eL~~~G~LtEsqVqvWFQNRRAReKRK 148 (336)
+|+.||++|+.+||..|.. ++ ||+..++++||.+|+ |++.+|++||||||+|+|+.
T Consensus 1 rr~~ft~~q~~~Le~~f~~~~~~~-yp~~~~r~~La~~~g----l~~~qV~~WFqNrR~r~kk~ 59 (60)
T 1k61_A 1 RGHRFTKENVRILESWFAKNIENP-YLDTKGLENLMKNTS----LSRIQIKNWVSNRRRKEKTI 59 (60)
T ss_dssp CCCSCCHHHHHHHHHHHHHTTTSC-CCCHHHHHHHHHHHC----CCHHHHHHHHHHHHHHHHCC
T ss_pred CcCcCCHHHHHHHHHHHHHcCCCC-CcCHHHHHHHHHHHC----cCHHHHHHHHHHHHcccccC
Confidence 4789999999999999999 77 999999999999998 99999999999999999874
No 51
>1du6_A PBX1, homeobox protein PBX1; homeodomain, gene regulation; NMR {Mus musculus} SCOP: a.4.1.1
Probab=99.71 E-value=1.3e-18 Score=126.50 Aligned_cols=58 Identities=21% Similarity=0.264 Sum_probs=55.2
Q ss_pred CCCCCCCCCHHHHHHHHHHH---hcCCCCCCHHHHHHHHHHHhhcCCCCCCcceecccchhhHHHH
Q 035594 85 LGSSRWNPTPEQLLALEEMY---RRGTRTPSAEQIQHIASQLRRFGKIEGKNVFYWFQNHKARERQ 147 (336)
Q Consensus 85 ~rR~Rw~FT~EQLqiLEelF---~~g~~YPs~eqRqeIA~eL~~~G~LtEsqVqvWFQNRRAReKR 147 (336)
.++.|+.||++|+.+||..| ..++ ||+.+++++||..|+ |++.+|++||||||+|+||
T Consensus 3 ~rr~R~~ft~~q~~~Le~~f~~~~~~~-yp~~~~r~~La~~~~----L~~~qV~~WFqNrR~r~kk 63 (64)
T 1du6_A 3 GHIEGRHMNKQATEILNEYFYSHLSNP-YPSEEAKEELAKKCG----ITVSQVSNWFGNKRIRYKK 63 (64)
T ss_dssp CCCCCCSSTTTHHHHHHHHHHHTTTSC-CCCHHHHHHHHHHHT----SCHHHHHHHHHHHTTTSSC
T ss_pred CCCCCCcCCHHHHHHHHHHHHHcccCC-CCCHHHHHHHHHHHC----cCHHHHHHHHHHHHHHhcc
Confidence 47899999999999999999 7778 999999999999998 9999999999999999986
No 52
>3nar_A ZHX1, zinc fingers and homeoboxes protein 1; corepressor, homeodomain, structural genomics, oxford production facility, OPPF, transcription; 2.60A {Homo sapiens}
Probab=99.70 E-value=2.5e-18 Score=135.05 Aligned_cols=61 Identities=21% Similarity=0.348 Sum_probs=56.5
Q ss_pred CCCCCCCCCHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHhhcCCCCCCcceecccchhhHHHHhhh
Q 035594 85 LGSSRWNPTPEQLLALEEMYRRGTRTPSAEQIQHIASQLRRFGKIEGKNVFYWFQNHKARERQKRR 150 (336)
Q Consensus 85 ~rR~Rw~FT~EQLqiLEelF~~g~~YPs~eqRqeIA~eL~~~G~LtEsqVqvWFQNRRAReKRKrR 150 (336)
.+|.|+.||++|+.+||..|..++ ||+..+|++||..|+ |++.+|++||||||+|+||..-
T Consensus 25 ~~r~Rt~ft~~Ql~~Le~~F~~~~-yp~~~~r~~LA~~l~----L~~~qV~vWFqNRR~k~kk~~l 85 (96)
T 3nar_A 25 STGKICKKTPEQLHMLKSAFVRTQ-WPSPEEYDKLAKESG----LARTDIVSWFGDTRYAWKNGNL 85 (96)
T ss_dssp --CCSSSSCHHHHHHHHHHHHHCS-SCCHHHHHHHHHHHC----CCHHHHHHHHHHHHHHHTTTCC
T ss_pred CCCCCccCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHhC----CCHHHeeecchhhhhHhhhhcc
Confidence 478999999999999999999999 999999999999998 9999999999999999998653
No 53
>2ecb_A Zinc fingers and homeoboxes protein 1; homeobox domain, transcription factor, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.70 E-value=4.2e-18 Score=135.20 Aligned_cols=59 Identities=19% Similarity=0.348 Sum_probs=54.7
Q ss_pred CCCCCHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHhhcCCCCCCcceecccchhhHHHHhhhhh
Q 035594 89 RWNPTPEQLLALEEMYRRGTRTPSAEQIQHIASQLRRFGKIEGKNVFYWFQNHKARERQKRRRW 152 (336)
Q Consensus 89 Rw~FT~EQLqiLEelF~~g~~YPs~eqRqeIA~eL~~~G~LtEsqVqvWFQNRRAReKRKrRr~ 152 (336)
.-.||.+||.+||+.|..++ ||+..+|.+||..|+ |++.+|+|||||||||+|++.+.+
T Consensus 15 ~k~~t~~Ql~~Le~~F~~~~-yp~~~~r~~LA~~lg----Lte~qVkvWFqNRR~k~rk~~~~~ 73 (89)
T 2ecb_A 15 FKEKTAEQLRVLQASFLNSS-VLTDEELNRLRAQTK----LTRREIDAWFTEKKKSKALKEEKM 73 (89)
T ss_dssp CCCCCHHHHHHHHHHHHHCS-SCCHHHHHHHHHHTC----CCHHHHHHHHHHHHHHHHSCCSCC
T ss_pred hccCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHhC----cChHHCeecccccchHHHHHHHHh
Confidence 33899999999999999999 999999999999998 999999999999999999866554
No 54
>1x2n_A Homeobox protein pknox1; homeobox domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.70 E-value=7.7e-18 Score=125.52 Aligned_cols=60 Identities=18% Similarity=0.168 Sum_probs=56.5
Q ss_pred CCCCCCCCCHHHHHHHHHHHhc---CCCCCCHHHHHHHHHHHhhcCCCCCCcceecccchhhHHHHhh
Q 035594 85 LGSSRWNPTPEQLLALEEMYRR---GTRTPSAEQIQHIASQLRRFGKIEGKNVFYWFQNHKARERQKR 149 (336)
Q Consensus 85 ~rR~Rw~FT~EQLqiLEelF~~---g~~YPs~eqRqeIA~eL~~~G~LtEsqVqvWFQNRRAReKRKr 149 (336)
.++.|+.||++|+.+||..|.. ++ ||+.+++++||.+|+ |++.+|++||||||+|+|+..
T Consensus 7 ~rr~R~~~~~~q~~~Le~~f~~~~~~~-yp~~~~r~~La~~~~----L~~~qV~~WFqNrR~r~kk~~ 69 (73)
T 1x2n_A 7 GKNKRGVLPKHATNVMRSWLFQHIGHP-YPTEDEKKQIAAQTN----LTLLQVNNWFINARRRILQSG 69 (73)
T ss_dssp SCCSSCCCCHHHHHHHHHHHHHTTTSC-CCCHHHHHHHHHHHT----CCHHHHHHHHHHHHHHHHHTT
T ss_pred CCCCCCcCCHHHHHHHHHHHHHhCCCC-CCCHHHHHHHHHHHC----cCHHHHHHHhHHHHhhccccc
Confidence 5889999999999999999987 67 999999999999998 999999999999999999864
No 55
>1lfb_A Liver transcription factor (LFB1); transcription regulation; 2.80A {Rattus norvegicus} SCOP: a.4.1.1 PDB: 2lfb_A
Probab=99.69 E-value=2.6e-18 Score=138.18 Aligned_cols=66 Identities=21% Similarity=0.355 Sum_probs=54.3
Q ss_pred CCCCCCCCCHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHhhc--------------CC---CCCCcceecccchhhHHHH
Q 035594 85 LGSSRWNPTPEQLLALEEMYRRGTRTPSAEQIQHIASQLRRF--------------GK---IEGKNVFYWFQNHKARERQ 147 (336)
Q Consensus 85 ~rR~Rw~FT~EQLqiLEelF~~g~~YPs~eqRqeIA~eL~~~--------------G~---LtEsqVqvWFQNRRAReKR 147 (336)
.+|.||.||++||.+||..|..++ ||+..+|++||..++.. .+ |++.+|+|||||||+|+|+
T Consensus 9 ~rr~Rt~ft~~Ql~~LE~~F~~~~-yP~~~~R~eLA~~~n~~~~~~~g~~~~~~~~lg~~~lse~qV~vWFqNRR~k~k~ 87 (99)
T 1lfb_A 9 GRRNRFKWGPASQQILFQAYERQK-NPSKEERETLVEECNRAECIQRGVSPSQAQGLGSNLVTEVRVYNWFANRRKEEAF 87 (99)
T ss_dssp ----CCCCCHHHHHHHHHHHTTCS-SCCHHHHHHHHHHHHHHHHTTTTCCTTCTTTTGGGCCCHHHHHHHHHHHHHTTSC
T ss_pred CCCCCcCcCHHHHHHHHHHHhcCC-CCCHHHHHHHHHHhccccccccccccccccccCccccCcceeeeccHHHHHHHHH
Confidence 589999999999999999999999 99999999999995531 23 9999999999999998877
Q ss_pred hhhh
Q 035594 148 KRRR 151 (336)
Q Consensus 148 KrRr 151 (336)
+.+.
T Consensus 88 k~~~ 91 (99)
T 1lfb_A 88 RHKL 91 (99)
T ss_dssp CC--
T ss_pred hchh
Confidence 6544
No 56
>2dmp_A Zinc fingers and homeoboxes protein 2; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.69 E-value=7.5e-18 Score=131.53 Aligned_cols=61 Identities=11% Similarity=0.293 Sum_probs=55.6
Q ss_pred CCCCCCCHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHhhcCCCCCCcceecccchhhHHHHhhhhh
Q 035594 87 SSRWNPTPEQLLALEEMYRRGTRTPSAEQIQHIASQLRRFGKIEGKNVFYWFQNHKARERQKRRRW 152 (336)
Q Consensus 87 R~Rw~FT~EQLqiLEelF~~g~~YPs~eqRqeIA~eL~~~G~LtEsqVqvWFQNRRAReKRKrRr~ 152 (336)
.++..||++||.+||..|..++ ||+..+|++||..|+ |++.+|++||||||||+|++.+..
T Consensus 15 ~k~k~~t~~Ql~~Le~~F~~~~-yp~~~~r~~La~~~~----l~~~qV~vWFqNRR~k~r~~~~~~ 75 (89)
T 2dmp_A 15 QKFKEKTQGQVKILEDSFLKSS-FPTQAELDRLRVETK----LSRREIDSWFSERRKLRDSMEQAV 75 (89)
T ss_dssp SCCCCCCHHHHHHHHHHHHHCS-SCCHHHHHHHHHHHT----CCHHHHHHHHHHHHHHHHTSCSCC
T ss_pred cccccCCHHHHHHHHHHHccCC-CCCHHHHHHHHHHhC----CCHHhccHhhHhHHHHHHHHhHhh
Confidence 4445599999999999999999 999999999999998 999999999999999998876654
No 57
>1au7_A Protein PIT-1, GHF-1; complex (DNA-binding protein/DNA), pituitary, CPHD, POU domain, transcription factor, transcription/DNA complex; HET: DNA; 2.30A {Rattus norvegicus} SCOP: a.4.1.1 a.35.1.1
Probab=99.68 E-value=6.8e-18 Score=142.01 Aligned_cols=60 Identities=27% Similarity=0.412 Sum_probs=56.1
Q ss_pred CCCCCCCCCHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHhhcCCCCCCcceecccchhhHHHHhh
Q 035594 85 LGSSRWNPTPEQLLALEEMYRRGTRTPSAEQIQHIASQLRRFGKIEGKNVFYWFQNHKARERQKR 149 (336)
Q Consensus 85 ~rR~Rw~FT~EQLqiLEelF~~g~~YPs~eqRqeIA~eL~~~G~LtEsqVqvWFQNRRAReKRKr 149 (336)
.+|.|+.||.+|+.+||..|..++ ||+..+|.+||..|+ |++.+|++||||||+|+||++
T Consensus 87 ~rr~Rt~ft~~Q~~~Le~~F~~~~-yp~~~~r~~LA~~l~----L~~~qV~vWFqNRR~k~kr~k 146 (146)
T 1au7_A 87 KRKRRTTISIAAKDALERHFGEHS-KPSSQEIMRMAEELN----LEKEVVRVWFCNRRQREKRVK 146 (146)
T ss_dssp --CCCCCCCHHHHHHHHHHHHHCS-SCCHHHHHHHHHHHT----CCHHHHHHHHHHHHHHTTSCC
T ss_pred CCCCCcCccHHHHHHHHHHHHHcC-CCCHHHHHHHHHHhC----CChhhchhhhHhhhhhhhccC
Confidence 588999999999999999999999 999999999999998 999999999999999999864
No 58
>1e3o_C Octamer-binding transcription factor 1; transcription factor, POU domain, dimer, DNA binding; 1.9A {Homo sapiens} SCOP: a.4.1.1 a.35.1.1 PDB: 1gt0_C 1hf0_A* 1cqt_A* 1o4x_A 1oct_C* 1pou_A 1pog_A 1hdp_A
Probab=99.68 E-value=8.4e-18 Score=142.82 Aligned_cols=59 Identities=27% Similarity=0.448 Sum_probs=54.8
Q ss_pred CCCCCCCCCHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHhhcCCCCCCcceecccchhhHHHHh
Q 035594 85 LGSSRWNPTPEQLLALEEMYRRGTRTPSAEQIQHIASQLRRFGKIEGKNVFYWFQNHKARERQK 148 (336)
Q Consensus 85 ~rR~Rw~FT~EQLqiLEelF~~g~~YPs~eqRqeIA~eL~~~G~LtEsqVqvWFQNRRAReKRK 148 (336)
.+|.|+.||.+|+.+||..|..++ ||+..+|++||..|+ |++.+|++||||||+|+||+
T Consensus 101 ~rr~Rt~ft~~Q~~~Le~~F~~~~-yp~~~~r~~LA~~l~----L~~~qV~vWFqNRR~k~kr~ 159 (160)
T 1e3o_C 101 RRKKRTSIETNIRVALEKSFMENQ-KPTSEDITLIAEQLN----MEKEVIRVWFSNRRQKEKRI 159 (160)
T ss_dssp ---CCCCCCHHHHHHHHHHHHHCS-SCCHHHHHHHHHHHT----CCHHHHHHHHHHHHHHHTSC
T ss_pred CCcCccccCHHHHHHHHHHHhhcC-CCCHHHHHHHHHHHC----CChHHhhHhhHHhhhhhhcc
Confidence 589999999999999999999999 999999999999998 99999999999999999985
No 59
>2e19_A Transcription factor 8; homeobox domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.67 E-value=9.8e-18 Score=124.60 Aligned_cols=57 Identities=30% Similarity=0.424 Sum_probs=53.3
Q ss_pred CCCCCCCCHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHhhcCCCCCCcceecccchhhHHHH
Q 035594 86 GSSRWNPTPEQLLALEEMYRRGTRTPSAEQIQHIASQLRRFGKIEGKNVFYWFQNHKARERQ 147 (336)
Q Consensus 86 rR~Rw~FT~EQLqiLEelF~~g~~YPs~eqRqeIA~eL~~~G~LtEsqVqvWFQNRRAReKR 147 (336)
...+..|+++||.+||..|..++ ||+..+|++||.+|+ |++.+|++||||||||+++
T Consensus 4 g~~~~~p~~~Ql~~Le~~F~~~~-yp~~~~r~~LA~~l~----L~e~qVqvWFqNRRak~~~ 60 (64)
T 2e19_A 4 GSSGQPPLKNLLSLLKAYYALNA-QPSAEELSKIADSVN----LPLDVVKKWFEKMQAGQIS 60 (64)
T ss_dssp SCSCCCCCHHHHHHHHHHHTTCS-SCCHHHHHHHHHHHT----CCHHHHHHHHHHHHHTCSC
T ss_pred CCCCCCccHHHHHHHHHHHhcCC-CcCHHHHHHHHHHhC----cChhhcCcchhcccCCCCC
Confidence 45677899999999999999999 999999999999998 9999999999999998875
No 60
>1mnm_C Protein (MAT alpha-2 transcriptional repressor); transcription regulation, transcriptional repression, DNA- binding protein; HET: DNA; 2.25A {Saccharomyces cerevisiae} SCOP: a.4.1.1
Probab=99.67 E-value=1.3e-17 Score=128.44 Aligned_cols=58 Identities=12% Similarity=0.241 Sum_probs=54.9
Q ss_pred CCCCCCCCCHHHHHHHHHHHhc---CCCCCCHHHHHHHHHHHhhcCCCCCCcceecccchhhHHHH
Q 035594 85 LGSSRWNPTPEQLLALEEMYRR---GTRTPSAEQIQHIASQLRRFGKIEGKNVFYWFQNHKARERQ 147 (336)
Q Consensus 85 ~rR~Rw~FT~EQLqiLEelF~~---g~~YPs~eqRqeIA~eL~~~G~LtEsqVqvWFQNRRAReKR 147 (336)
.+++|+.||++|+.+||..|.. ++ ||+..+|++||..|+ |++.+|++||||||+|+|.
T Consensus 27 ~~k~r~~ft~~q~~~Le~~f~~~~~~~-yP~~~~r~~La~~~g----L~~~qV~~WFqNrR~r~k~ 87 (87)
T 1mnm_C 27 KPYRGHRFTKENVRILESWFAKNIENP-YLDTKGLENLMKNTS----LSRIQIKNWVSNRRRKEKT 87 (87)
T ss_dssp SCCTTCCCCHHHHHHHHHHHHHTTSSC-CCCHHHHHHHHHHHC----CCHHHHHHHHHHHHHHHTC
T ss_pred CCCCCCcCCHHHHHHHHHHHHHhCCCC-CcCHHHHHHHHHHHC----cCHHHHHHHHHHHHhhccC
Confidence 5778999999999999999999 88 999999999999998 9999999999999999873
No 61
>2cqx_A LAG1 longevity assurance homolog 5; homeodomain, DNA binding domain, transcription, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.1
Probab=99.67 E-value=3.3e-18 Score=129.47 Aligned_cols=58 Identities=14% Similarity=0.288 Sum_probs=54.3
Q ss_pred CCCCCCCCHHHHHHHHHHH-hcCCCCCCHHHHHHHHHHHhhcCCCCCCcceecccchhhHHHHh
Q 035594 86 GSSRWNPTPEQLLALEEMY-RRGTRTPSAEQIQHIASQLRRFGKIEGKNVFYWFQNHKARERQK 148 (336)
Q Consensus 86 rR~Rw~FT~EQLqiLEelF-~~g~~YPs~eqRqeIA~eL~~~G~LtEsqVqvWFQNRRAReKRK 148 (336)
.+.|..+|.+|+.+||..| ..++ ||+..+|++||.+|+ |++.+|++||||||||+|+.
T Consensus 9 ~k~r~r~~~~ql~~LE~~F~~~~~-yp~~~~r~~LA~~l~----l~e~qVqvWFqNRR~k~r~~ 67 (72)
T 2cqx_A 9 IKDSPVNKVEPNDTLEKVFVSVTK-YPDEKRLKGLSKQLD----WSVRKIQCWFRHRRNQDKPS 67 (72)
T ss_dssp CCCCCCSCSCSTTHHHHHHHHTCS-SCCHHHHHHHHHHTT----CCHHHHHHHHHHHHHHHSSC
T ss_pred CCCCCCCCHHHHHHHHHHHHhcCC-CcCHHHHHHHHHHhC----CChhhcchhhhhcccCCCCC
Confidence 6677889999999999999 8888 999999999999998 99999999999999999874
No 62
>2xsd_C POU domain, class 3, transcription factor 1; transcription-DNA complex, SOX; 2.05A {Mus musculus}
Probab=99.67 E-value=9.6e-18 Score=143.90 Aligned_cols=62 Identities=26% Similarity=0.342 Sum_probs=52.3
Q ss_pred CCCCCCCCCHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHhhcCCCCCCcceecccchhhHHHHhhhh
Q 035594 85 LGSSRWNPTPEQLLALEEMYRRGTRTPSAEQIQHIASQLRRFGKIEGKNVFYWFQNHKARERQKRRR 151 (336)
Q Consensus 85 ~rR~Rw~FT~EQLqiLEelF~~g~~YPs~eqRqeIA~eL~~~G~LtEsqVqvWFQNRRAReKRKrRr 151 (336)
.+|+|+.||.+|+.+||..|..++ ||+..+|.+||..|+ |++.+|++||||||+|+||+.+.
T Consensus 99 ~rr~Rt~ft~~Ql~~LE~~F~~~~-yp~~~~r~~LA~~l~----L~~~qV~vWFqNRR~k~kr~~~~ 160 (164)
T 2xsd_C 99 KRKKRTSIEVGVKGALESHFLKCP-KPSAHEITGLADSLQ----LEKEVVRVWFCNRRQKEKRMTPA 160 (164)
T ss_dssp -------CCHHHHHHHHHHHHHCS-SCCHHHHHHHHHHHT----CCHHHHHHHHHHHHHHHTBSCC-
T ss_pred CCCCceeccHHHHHHHHHHHhcCC-CCCHHHHHHHHHHHC----CChhhhhhhhHHhhHHHhhccCC
Confidence 588999999999999999999999 999999999999998 99999999999999999987654
No 63
>1le8_B Mating-type protein alpha-2; matalpha2, isothermal titration calorimetry, protein-DNA complex, transcription/DNA complex; 2.30A {Saccharomyces cerevisiae} SCOP: a.4.1.1 PDB: 1akh_B* 1apl_C* 1yrn_B*
Probab=99.66 E-value=1.8e-17 Score=127.22 Aligned_cols=61 Identities=11% Similarity=0.204 Sum_probs=54.6
Q ss_pred CCCCCCCCHHHHHHHHHHHhc---CCCCCCHHHHHHHHHHHhhcCCCCCCcceecccchhhHHHHhhhh
Q 035594 86 GSSRWNPTPEQLLALEEMYRR---GTRTPSAEQIQHIASQLRRFGKIEGKNVFYWFQNHKARERQKRRR 151 (336)
Q Consensus 86 rR~Rw~FT~EQLqiLEelF~~---g~~YPs~eqRqeIA~eL~~~G~LtEsqVqvWFQNRRAReKRKrRr 151 (336)
++.|+.||.+|+.+||..|.. ++ ||+..+|++||..|+ |++.+|++||||||+|+|+....
T Consensus 3 ~krr~rft~~q~~~Le~~f~~h~~~~-yP~~~~r~~La~~~g----Lt~~qV~~WFqNrR~r~kk~~~~ 66 (83)
T 1le8_B 3 PYRGHRFTKENVRILESWFAKNIENP-YLDTKGLENLMKNTS----LSRIQIKNWVAARRAKEKTITIA 66 (83)
T ss_dssp --CCCCCCHHHHHHHHHHHHHTSSSC-CCCHHHHHHHHHHHC----CCHHHHHHHHHHHHHHHTTSCCC
T ss_pred CCCCCCCCHHHHHHHHHHHHhhCCCC-CcCHHHHHHHHHHHC----CCHHHcccccHHHHccccccccC
Confidence 355667999999999999999 88 999999999999998 99999999999999999886544
No 64
>3d1n_I POU domain, class 6, transcription factor 1; protein-DNA complex, helix-turn-helix (HTH), DNA-binding, homeobox, nucleus, transcription regulation; 2.51A {Homo sapiens}
Probab=99.66 E-value=3.1e-17 Score=137.72 Aligned_cols=58 Identities=22% Similarity=0.446 Sum_probs=56.2
Q ss_pred CCCCCCCCCHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHhhcCCCCCCcceecccchhhHHHH
Q 035594 85 LGSSRWNPTPEQLLALEEMYRRGTRTPSAEQIQHIASQLRRFGKIEGKNVFYWFQNHKARERQ 147 (336)
Q Consensus 85 ~rR~Rw~FT~EQLqiLEelF~~g~~YPs~eqRqeIA~eL~~~G~LtEsqVqvWFQNRRAReKR 147 (336)
.+|.|+.||.+|+.+||..|..++ ||+..+|.+||.+|+ |++.+|++||||||+|+||
T Consensus 93 ~rr~Rt~ft~~q~~~Le~~F~~~~-yp~~~~r~~LA~~l~----L~~~qV~vWFqNrR~k~Kk 150 (151)
T 3d1n_I 93 KRKRRTSFTPQAIEALNAYFEKNP-LPTGQEITEMAKELN----YDREVVRVWFSNRRQTLKN 150 (151)
T ss_dssp CCCCCCCCCHHHHHHHHHHHHHCS-SCCHHHHHHHHHHHT----SCHHHHHHHHHHHHHHHTC
T ss_pred CCCCCcccCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHC----CCHHHhHHHHHHHHhccCC
Confidence 588999999999999999999999 999999999999998 9999999999999999986
No 65
>2l9r_A Homeobox protein NKX-3.1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}
Probab=99.65 E-value=1e-17 Score=127.16 Aligned_cols=56 Identities=25% Similarity=0.449 Sum_probs=52.5
Q ss_pred CCCHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHhhcCCCCCCcceecccchhhHHHHhhhh
Q 035594 91 NPTPEQLLALEEMYRRGTRTPSAEQIQHIASQLRRFGKIEGKNVFYWFQNHKARERQKRRR 151 (336)
Q Consensus 91 ~FT~EQLqiLEelF~~g~~YPs~eqRqeIA~eL~~~G~LtEsqVqvWFQNRRAReKRKrRr 151 (336)
..|++|+.+||..|..++ ||+..+|.+||..|+ |++.+|++||||||||+||+.+.
T Consensus 10 ~~t~~ql~~LE~~F~~~~-yp~~~~r~~LA~~l~----Lte~qVqvWFqNRRak~kr~~~~ 65 (69)
T 2l9r_A 10 HMSHTQVIELERKFSHQK-YLSAPERAHLAKNLK----LTETQVKIWFQNRRYKTKRKQLS 65 (69)
T ss_dssp CCCHHHHHHHHHHHHHCS-CCCHHHHHHHHHHTT----CCHHHHHHHHHHHHHHSCCSSSS
T ss_pred cCCHHHHHHHHHHHhcCC-CCCHHHHHHHHHHhC----CChhheeecchhhhhhhhhhhhh
Confidence 469999999999999999 999999999999998 99999999999999999987654
No 66
>2dmn_A Homeobox protein TGIF2LX; TGFB-induced factor 2-like protein, X-linked TGF(beta) induced transcription factor 2-like protein, TGIF-like on the X; NMR {Homo sapiens}
Probab=99.64 E-value=5.2e-17 Score=125.12 Aligned_cols=63 Identities=17% Similarity=0.194 Sum_probs=57.5
Q ss_pred CCCCCCCCCHHHHHHHHHHHhcC---CCCCCHHHHHHHHHHHhhcCCCCCCcceecccchhhHHHHhhhhh
Q 035594 85 LGSSRWNPTPEQLLALEEMYRRG---TRTPSAEQIQHIASQLRRFGKIEGKNVFYWFQNHKARERQKRRRW 152 (336)
Q Consensus 85 ~rR~Rw~FT~EQLqiLEelF~~g---~~YPs~eqRqeIA~eL~~~G~LtEsqVqvWFQNRRAReKRKrRr~ 152 (336)
.+++|+.||.+|+.+||..|... + ||+.++|++||.+|+ |++.||++||||||+|+|++...+
T Consensus 7 ~rk~R~~~s~~q~~~L~~~f~~~~~~p-YPs~~~r~~LA~~~g----Ls~~qV~~WFqNrR~r~k~~~~~~ 72 (83)
T 2dmn_A 7 GKKRKGNLPAESVKILRDWMYKHRFKA-YPSEEEKQMLSEKTN----LSLLQISNWFINARRRILPDMLQQ 72 (83)
T ss_dssp CCCCCSSCCHHHHHHHHHHHHHTTTTC-CCCHHHHHHHHHHHC----CCHHHHHHHHHHHHHHTHHHHTCC
T ss_pred CCCCCCcCCHHHHHHHHHHHHHhccCC-CCCHHHHHHHHHHHC----cCHHHhhHHhhhhHhhhcHHHHHh
Confidence 48899999999999999999874 6 999999999999998 999999999999999998865443
No 67
>2d5v_A Hepatocyte nuclear factor 6; transcription factor, transcription-DNA complex; 2.00A {Rattus norvegicus} PDB: 1s7e_A
Probab=99.63 E-value=3.8e-17 Score=138.00 Aligned_cols=60 Identities=27% Similarity=0.276 Sum_probs=54.4
Q ss_pred CCCCCCCCCHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHhhcCCCCCCcceecccchhhHHHHhh
Q 035594 85 LGSSRWNPTPEQLLALEEMYRRGTRTPSAEQIQHIASQLRRFGKIEGKNVFYWFQNHKARERQKR 149 (336)
Q Consensus 85 ~rR~Rw~FT~EQLqiLEelF~~g~~YPs~eqRqeIA~eL~~~G~LtEsqVqvWFQNRRAReKRKr 149 (336)
.+|.|+.||++|+.+||..|..++ ||+.++|++||..|+ |++.+|++||||||+|+|+..
T Consensus 97 ~rr~Rt~ft~~q~~~Le~~F~~~~-yp~~~~r~~la~~l~----L~~~qV~~WFqNrR~r~k~~~ 156 (164)
T 2d5v_A 97 PKKPRLVFTDVQRRTLHAIFKENK-RPSKELQITISQQLG----LELSTVSNFFMNARRRSLDKW 156 (164)
T ss_dssp ---CCCCCCHHHHHHHHHHHHHCS-SCCHHHHHHHHHHHT----CCHHHHHHHHHHHHHTSSCC-
T ss_pred CCCCCCcCCHHHHHHHHHHHhcCC-CCCHHHHHHHHHHHC----cCHHHhhhcChhhhccccccC
Confidence 599999999999999999999999 999999999999998 999999999999999988743
No 68
>3nau_A Zinc fingers and homeoboxes protein 2; ZHX2, corepressor, homeodomain, domain swapping, structural oxford protein production facility, OPPF; 2.70A {Homo sapiens}
Probab=99.63 E-value=6.3e-17 Score=123.90 Aligned_cols=52 Identities=17% Similarity=0.379 Sum_probs=49.8
Q ss_pred CCHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHhhcCCCCCCcceecccchhhHHHHh
Q 035594 92 PTPEQLLALEEMYRRGTRTPSAEQIQHIASQLRRFGKIEGKNVFYWFQNHKARERQK 148 (336)
Q Consensus 92 FT~EQLqiLEelF~~g~~YPs~eqRqeIA~eL~~~G~LtEsqVqvWFQNRRAReKRK 148 (336)
-|.+||.+||+.|..++ ||+..+|++||..|+ |++++|++||||||+|+|+-
T Consensus 11 ~~~~Ql~~LE~~F~~~~-YPs~~er~eLA~~tg----Lt~~qVkvWFqNRR~k~Kkg 62 (66)
T 3nau_A 11 KTKEQIAHLKASFLQSQ-FPDDAEVYRLIEVTG----LARSEIKKWFSDHRYRCQRG 62 (66)
T ss_dssp CCHHHHHHHHHHHHGGG-SCCHHHHHHHHHHHC----CCHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHhcCC-CCCHHHHHHHHHHhC----cCHHHhhHhcccchhhhhcc
Confidence 48999999999999999 999999999999998 99999999999999999974
No 69
>3l1p_A POU domain, class 5, transcription factor 1; POU, transcription factor DNA complex, pore, stem cells; HET: DNA; 2.80A {Mus musculus} PDB: 1ocp_A
Probab=99.62 E-value=8.4e-17 Score=136.32 Aligned_cols=60 Identities=30% Similarity=0.466 Sum_probs=56.7
Q ss_pred CCCCCCCCCCHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHhhcCCCCCCcceecccchhhHHHHh
Q 035594 84 PLGSSRWNPTPEQLLALEEMYRRGTRTPSAEQIQHIASQLRRFGKIEGKNVFYWFQNHKARERQK 148 (336)
Q Consensus 84 ~~rR~Rw~FT~EQLqiLEelF~~g~~YPs~eqRqeIA~eL~~~G~LtEsqVqvWFQNRRAReKRK 148 (336)
..+|.|+.||++|+.+||..|..++ ||+..+|.+||..|+ |++.+|++||||||+|+||.
T Consensus 95 ~~rr~Rt~ft~~Q~~~Le~~F~~~~-yps~~~r~~LA~~l~----L~~~qV~vWFqNRR~k~Kr~ 154 (155)
T 3l1p_A 95 ARKRKRTSIENRVRWSLETMFLKSP-KPSLQQITHIANQLG----LEKDVVRVWFSNRRQKGKRS 154 (155)
T ss_dssp CSCCCCCCCCHHHHHHHHTTTTTCS-CCCHHHHHHHHHHTT----CCHHHHHHHHHHHHHHHHC-
T ss_pred CCCCCCcccCHHHHHHHHHHHccCC-CCCHHHHHHHHHHcC----CChhheeeccccccccccCC
Confidence 4688999999999999999999999 999999999999998 99999999999999999974
No 70
>1wi3_A DNA-binding protein SATB2; homeodomain, helix-turn-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.61 E-value=1.4e-16 Score=124.12 Aligned_cols=55 Identities=25% Similarity=0.356 Sum_probs=53.0
Q ss_pred CCCCCCCCCHHHHHHHHHHHhc-CCCCCCHHHHHHHHHHHhhcCCCCCCcceecccchhhH
Q 035594 85 LGSSRWNPTPEQLLALEEMYRR-GTRTPSAEQIQHIASQLRRFGKIEGKNVFYWFQNHKAR 144 (336)
Q Consensus 85 ~rR~Rw~FT~EQLqiLEelF~~-g~~YPs~eqRqeIA~eL~~~G~LtEsqVqvWFQNRRAR 144 (336)
++|.||.||.+||.+|+..|+. +. ||+.+.|++||++|+ |++.+|++||||||.-
T Consensus 7 ~kR~RT~~s~eQL~~Lqs~f~~~~~-yPd~~~r~~La~~tG----L~~~~IqVWFQNrR~~ 62 (71)
T 1wi3_A 7 GPRSRTKISLEALGILQSFIHDVGL-YPDQEAIHTLSAQLD----LPKHTIIKFFQNQRYH 62 (71)
T ss_dssp CCCCCCCCCSHHHHHHHHHHHHHCS-CCCHHHHHHHHHHSC----CCHHHHHHHHHHHHHH
T ss_pred CCCCCccCCHHHHHHHHHHHHhcCC-CCCHHHHHHHHHHhC----CCHHHHHHhhccceee
Confidence 5899999999999999999999 99 999999999999998 9999999999999974
No 71
>1x2m_A LAG1 longevity assurance homolog 6; homeobox domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: a.4.1.1
Probab=99.57 E-value=3e-16 Score=118.65 Aligned_cols=49 Identities=16% Similarity=0.454 Sum_probs=45.1
Q ss_pred HHHHHHHHHHHh-cCCCCCCHHHHHHHHHHHhhcCCCCCCcceecccchhhHHHH
Q 035594 94 PEQLLALEEMYR-RGTRTPSAEQIQHIASQLRRFGKIEGKNVFYWFQNHKARERQ 147 (336)
Q Consensus 94 ~EQLqiLEelF~-~g~~YPs~eqRqeIA~eL~~~G~LtEsqVqvWFQNRRAReKR 147 (336)
++|+.+||+.|. .++ ||+..+|.+||.+|+ |+|.||++||||||+|+|+
T Consensus 9 ~~~~~~LE~~F~~~~~-yp~~~~r~~LA~~l~----LterQVkvWFqNRR~k~k~ 58 (64)
T 1x2m_A 9 AQPNAILEKVFTAITK-HPDEKRLEGLSKQLD----WDVRSIQRWFRQRRNQEKP 58 (64)
T ss_dssp SCHHHHHHHHHHTTCS-SCCHHHHHHHHHHHC----SCHHHHHHHHHHHHHHSCC
T ss_pred chHHHHHHHHHHHcCC-CcCHHHHHHHHHHhC----CCHHHHHHHHHHHHhccCC
Confidence 458999999995 566 999999999999998 9999999999999999986
No 72
>3k2a_A Homeobox protein MEIS2; homeobox domain, DNA-binding, transcription, nucleus, phosphoprotein, DNA bindi protein; 1.95A {Homo sapiens} SCOP: a.4.1.1
Probab=99.55 E-value=9.7e-16 Score=114.13 Aligned_cols=57 Identities=19% Similarity=0.102 Sum_probs=50.2
Q ss_pred CCCHHHHHHHHHHHh---cCCCCCCHHHHHHHHHHHhhcCCCCCCcceecccchhhHHHHhhhhh
Q 035594 91 NPTPEQLLALEEMYR---RGTRTPSAEQIQHIASQLRRFGKIEGKNVFYWFQNHKARERQKRRRW 152 (336)
Q Consensus 91 ~FT~EQLqiLEelF~---~g~~YPs~eqRqeIA~eL~~~G~LtEsqVqvWFQNRRAReKRKrRr~ 152 (336)
.||++|+.+||..|. .++ ||+..++++||..|+ |++.+|++||||||+|.|+....+
T Consensus 4 ~f~~~~~~~L~~~f~~h~~~p-yp~~~~r~~La~~~~----l~~~qV~~WFqNrR~r~kk~~~~~ 63 (67)
T 3k2a_A 4 IFPKVATNIMRAWLFQHLTHP-YPSEEQKKQLAQDTG----LTILQVNNWFINARRRIVQPMIDQ 63 (67)
T ss_dssp --CHHHHHHHHHHHHHTTTSC-CCCHHHHHHHHHHHT----CCHHHHHHHHHHHHHHHHSCC---
T ss_pred cCCHHHHHHHHHHHHHhccCC-CCCHHHHHHHHHHhC----cCHHHhhhhhHHHHHHHhHHHHHH
Confidence 699999999999999 888 999999999999998 999999999999999999876554
No 73
>1ic8_A Hepatocyte nuclear factor 1-alpha; transcription regulation, DNA-binding, POU domain, diabetes, disease mutation, MODY3, transcription/DNA comple; 2.60A {Homo sapiens} SCOP: a.4.1.1 a.35.1.1
Probab=99.49 E-value=2.1e-15 Score=133.85 Aligned_cols=63 Identities=24% Similarity=0.418 Sum_probs=55.1
Q ss_pred CCCCCCCCCHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHhh-------------cCC----CCCCcceecccchhhHHHH
Q 035594 85 LGSSRWNPTPEQLLALEEMYRRGTRTPSAEQIQHIASQLRR-------------FGK----IEGKNVFYWFQNHKARERQ 147 (336)
Q Consensus 85 ~rR~Rw~FT~EQLqiLEelF~~g~~YPs~eqRqeIA~eL~~-------------~G~----LtEsqVqvWFQNRRAReKR 147 (336)
.+|.|+.||++||.+||+.|..++ ||+..+|++||..|+. +|- |++.+|++||||||+|+|.
T Consensus 115 ~rr~R~~ft~~ql~~Le~~F~~~~-yp~~~~Re~la~~~~~~~~~~~G~~~~~~~glg~~~lte~~V~~WFqNRR~~~k~ 193 (194)
T 1ic8_A 115 GRRNRFKWGPASQQILFQAYERQK-NPSKEERETLVEECNRAECIQRGVSPSQAQGLGSNLVTEVRVYNWFANRRKEEAF 193 (194)
T ss_dssp --CCCCCCCHHHHHHHHHHHHHHC-CCCTTTTHHHHHHHHHHHHHHSSCCCTTCCTTGGGCCCHHHHHHHHHHHHHHCC-
T ss_pred CCCCCcccCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHhCchhhccccccccccccccccccCccccchhchhhhhhhhc
Confidence 589999999999999999999999 9999999999999982 333 9999999999999999875
Q ss_pred h
Q 035594 148 K 148 (336)
Q Consensus 148 K 148 (336)
+
T Consensus 194 ~ 194 (194)
T 1ic8_A 194 R 194 (194)
T ss_dssp -
T ss_pred C
Confidence 3
No 74
>2h8r_A Hepatocyte nuclear factor 1-beta; trasncription factor, POU, homeo, protein-DNA, human disease; 3.20A {Homo sapiens}
Probab=99.39 E-value=1e-13 Score=126.14 Aligned_cols=60 Identities=23% Similarity=0.448 Sum_probs=54.9
Q ss_pred CCCCCCCCCHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHhhc-----------------CCCCCCcceecccchhhHH
Q 035594 85 LGSSRWNPTPEQLLALEEMYRRGTRTPSAEQIQHIASQLRRF-----------------GKIEGKNVFYWFQNHKARE 145 (336)
Q Consensus 85 ~rR~Rw~FT~EQLqiLEelF~~g~~YPs~eqRqeIA~eL~~~-----------------G~LtEsqVqvWFQNRRARe 145 (336)
.+|.|+.||++|+.+||..|..++ ||+..+|++||..|+.. ..|+|.+|++||||||+++
T Consensus 142 ~RR~R~~ft~~ql~~Le~~F~~~~-YP~~~~ReeLA~~~n~~~~~~rg~~~~~~~~L~~~~lte~~V~~WFqNRR~~~ 218 (221)
T 2h8r_A 142 MRRNRFKWGPASQQILYQAYDRQK-NPSKEEREALVEECNRAECLQRGVSPSKAHGLGSNLVTEVRVYNWFANRRKEE 218 (221)
T ss_dssp CCCCCCCCCHHHHHHHHHHHHHCS-SCCHHHHHHHHHHHHHHHHHHTTCCSTTGGGGTTSCCCHHHHHHHHHHHHTTC
T ss_pred CCCCCcCCCHHHHHHHHHHHHcCC-CCCHHHHHHHHHHHChhhhcccccccchhccccccccCHHHHHHHhHHhhhhh
Confidence 599999999999999999999999 99999999999999831 2489999999999999864
No 75
>1mh3_A Maltose binding-A1 homeodomain protein chimera; MATA1, binding cooperativity, maltose binding protein, MBP, sugar binding, DNA binding protein; 2.10A {Escherichia coli} SCOP: a.4.1.1 c.94.1.1 PDB: 1mh4_A 1le8_A
Probab=99.34 E-value=1.2e-13 Score=124.40 Aligned_cols=56 Identities=21% Similarity=0.389 Sum_probs=53.3
Q ss_pred CCCCCCCCHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHhhcCCCCCCcceecccchhhHHH
Q 035594 86 GSSRWNPTPEQLLALEEMYRRGTRTPSAEQIQHIASQLRRFGKIEGKNVFYWFQNHKARER 146 (336)
Q Consensus 86 rR~Rw~FT~EQLqiLEelF~~g~~YPs~eqRqeIA~eL~~~G~LtEsqVqvWFQNRRAReK 146 (336)
++.|..++.+|+.+||+.|+.++ ||+..+|++||.+|+ |+++||++||||||+|+|
T Consensus 366 ~~~~~~~~~~q~~~Le~~f~~~~-yp~~~~~~~la~~~~----l~~~qv~~wf~n~r~~~~ 421 (421)
T 1mh3_A 366 TAAAAAISPQARAFLEQVFRRKQ-SLNSKEKEEVAKKCG----ITPLQVRVWFINKRMRSK 421 (421)
T ss_dssp HHHHCSSCHHHHHHHHHHHHHCS-CCCHHHHHHHHHHHT----SCHHHHHHHHHHHHCCCC
T ss_pred hhhhhhhcchHHHHHHHHHhcCC-CcCHHHHHHHHHHHC----cCHHHhhHhhhhcccccC
Confidence 56788999999999999999999 999999999999998 999999999999999875
No 76
>2da7_A Zinc finger homeobox protein 1B; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.24 E-value=1.6e-12 Score=101.20 Aligned_cols=48 Identities=19% Similarity=0.433 Sum_probs=45.2
Q ss_pred CCHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHhhcCCCCCCcceecccchhhH
Q 035594 92 PTPEQLLALEEMYRRGTRTPSAEQIQHIASQLRRFGKIEGKNVFYWFQNHKAR 144 (336)
Q Consensus 92 FT~EQLqiLEelF~~g~~YPs~eqRqeIA~eL~~~G~LtEsqVqvWFQNRRAR 144 (336)
+=++||.+||..|..++ +|+.++|++||..|+ |+...|++||||||++
T Consensus 12 ~~k~ql~~Lk~yF~~n~-~Ps~eei~~LA~~lg----L~~~VVrVWFqNrRa~ 59 (71)
T 2da7_A 12 PYKDHMSVLKAYYAMNM-EPNSDELLKISIAVG----LPQEFVKEWFEQRKVY 59 (71)
T ss_dssp SSTHHHHHHHHHHHHCS-SCCHHHHHHHHHHHT----CCHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhCC-CCCHHHHHHHHHHhC----CCHHHHHHHHhhcccc
Confidence 44799999999999999 999999999999998 9999999999999974
No 77
>2lk2_A Homeobox protein TGIF1; NESG, structural genomics, northeast structural genomics CON PSI-biology, transcription; NMR {Homo sapiens}
Probab=99.24 E-value=4.2e-12 Score=101.69 Aligned_cols=59 Identities=19% Similarity=0.241 Sum_probs=53.0
Q ss_pred CCCCHHHHHHHHHHHhc---CCCCCCHHHHHHHHHHHhhcCCCCCCcceecccchhhHHHHhhhhhh
Q 035594 90 WNPTPEQLLALEEMYRR---GTRTPSAEQIQHIASQLRRFGKIEGKNVFYWFQNHKARERQKRRRWE 153 (336)
Q Consensus 90 w~FT~EQLqiLEelF~~---g~~YPs~eqRqeIA~eL~~~G~LtEsqVqvWFQNRRAReKRKrRr~e 153 (336)
.-|+++|+.+|+.-|.. ++ ||+.+++++||.+++ |++.||++||||||+|.++...+..
T Consensus 10 ~~l~~~~~~iL~~W~~~h~~np-YPs~~ek~~LA~~tg----Lt~~QV~~WF~NrR~R~kk~~~~~~ 71 (89)
T 2lk2_A 10 HMLPKESVQILRDWLYEHRYNA-YPSEQEKALLSQQTH----LSTLQVCNWFINARRRLLPDMLRKD 71 (89)
T ss_dssp CCCCHHHHHHHHHHHHHTSGGG-SCCHHHHHHHHHHSS----SCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccCCHHHHHHHHHHHHHhccCC-CCCHHHHHHHHHHHC----cCHHHHHHHHHHHHHHhhhHHHHhc
Confidence 35899999999999987 67 999999999999998 9999999999999999988765543
No 78
>2nzz_A Penetratin conjugated GAS (374-394) peptide; conformational analysis, G protein, GAS subunit, A2A adenosine receptor, cell-penetrating peptides; NMR {Synthetic} PDB: 2o00_A
Probab=98.56 E-value=9.1e-09 Score=71.23 Aligned_cols=21 Identities=19% Similarity=0.446 Sum_probs=19.0
Q ss_pred CcceecccchhhHHHHhhhhh
Q 035594 132 KNVFYWFQNHKARERQKRRRW 152 (336)
Q Consensus 132 sqVqvWFQNRRAReKRKrRr~ 152 (336)
+||+|||||||||+|++.+..
T Consensus 1 rQVkIWFQNRRaK~Kk~~~~~ 21 (37)
T 2nzz_A 1 RQIKIWFQNRRMKWKKRVFND 21 (37)
T ss_dssp CCTTTTTTCSHHHHTSSHHHH
T ss_pred CCceeccHHHHHHHHHHhHHH
Confidence 489999999999999988875
No 79
>2ys9_A Homeobox and leucine zipper protein homez; homeodomain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=75.81 E-value=0.73 Score=35.86 Aligned_cols=37 Identities=19% Similarity=0.421 Sum_probs=34.6
Q ss_pred HHHHHHHhcCCCCCCHHHHHHHHHHHhhcCCCCCCcceeccc
Q 035594 98 LALEEMYRRGTRTPSAEQIQHIASQLRRFGKIEGKNVFYWFQ 139 (336)
Q Consensus 98 qiLEelF~~g~~YPs~eqRqeIA~eL~~~G~LtEsqVqvWFQ 139 (336)
++|++.|...+ .+..++.+.|..+-+ |+-.+|+-||-
T Consensus 19 e~L~~Yy~~hk-~L~EeDl~~L~~ksk----ms~qqvkdwFa 55 (70)
T 2ys9_A 19 QPLERYWAAHQ-QLRETDIPQLSQASR----LSTQQVLDWFD 55 (70)
T ss_dssp HHHHHHHHHTC-CCCTTHHHHHHHHTT----CCHHHHHHHHH
T ss_pred hHHHHHHHHhc-ccchhhHHHHHHHhC----CCHHHHHHHHH
Confidence 68999999999 899999999999997 99999999994
No 80
>1jko_C HIN recombinase, DNA-invertase HIN; water-mediated recognition, protein-DNA complex, A10G mutant, DNA binding protein/DNA complex; 2.24A {Synthetic} SCOP: a.4.1.2 PDB: 1ijw_C* 1jj6_C* 1jj8_C* 1hcr_A 1jkp_C 1jkq_C 1jkr_C
Probab=63.52 E-value=2 Score=27.39 Aligned_cols=43 Identities=12% Similarity=0.233 Sum_probs=31.2
Q ss_pred CCCHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHhhcCCCCCCcceecccchhh
Q 035594 91 NPTPEQLLALEEMYRRGTRTPSAEQIQHIASQLRRFGKIEGKNVFYWFQNHKA 143 (336)
Q Consensus 91 ~FT~EQLqiLEelF~~g~~YPs~eqRqeIA~eL~~~G~LtEsqVqvWFQNRRA 143 (336)
.++++|...+-.++..+. + ..+||..|+ |+..-|+.|+.....
T Consensus 5 ~~~~~~~~~i~~l~~~g~---s---~~~ia~~lg----vs~~Tv~r~l~~~~~ 47 (52)
T 1jko_C 5 AINKHEQEQISRLLEKGH---P---RQQLAIIFG----IGVSTLYRYFPASSI 47 (52)
T ss_dssp SSCTTHHHHHHHHHHTTC---C---HHHHHHTTS----CCHHHHHHHSCTTC-
T ss_pred CCCHHHHHHHHHHHHcCC---C---HHHHHHHHC----CCHHHHHHHHHHccc
Confidence 467777777777777664 2 346888887 999999999976544
No 81
>2lv7_A Calcium-binding protein 7; metal binding protein; NMR {Homo sapiens}
Probab=61.96 E-value=7.4 Score=29.58 Aligned_cols=51 Identities=10% Similarity=0.077 Sum_probs=39.8
Q ss_pred CCCCCCCCHHHHHHHHHHHhc----CCCCCCHHHHHHHHHHHhhcCCCCCCcceecc
Q 035594 86 GSSRWNPTPEQLLALEEMYRR----GTRTPSAEQIQHIASQLRRFGKIEGKNVFYWF 138 (336)
Q Consensus 86 rR~Rw~FT~EQLqiLEelF~~----g~~YPs~eqRqeIA~eL~~~G~LtEsqVqvWF 138 (336)
.+....+|.+|++.|.++|.. +.+|.+..+...+-..|+. .+++..|+.+|
T Consensus 24 ~~~~~~l~~~~~~el~~~F~~~D~d~~G~I~~~El~~~l~~lg~--~~~~~ei~~l~ 78 (100)
T 2lv7_A 24 EQRPVDIPEDELEEIREAFKVFDRDGNGFISKQELGTAMRSLGY--MPNEVELEVII 78 (100)
T ss_dssp TCSCCCCCGGGHHHHHHHHHHTCSSCSSCBCHHHHHHHHHHHTC--CCCTTTHHHHH
T ss_pred hcccccCCHHHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHhCC--CCCHHHHHHHH
Confidence 344567899999999999964 5678999988888887763 47888877665
No 82
>1fi6_A EH domain protein REPS1; EPS15 homology domain, EF hand, calcium, RAS signal transduction, endocytosis/exocytosis complex; NMR {Mus musculus} SCOP: a.39.1.6
Probab=61.68 E-value=3 Score=30.66 Aligned_cols=42 Identities=10% Similarity=0.084 Sum_probs=31.3
Q ss_pred CCCCHHHHHHHHHHHhc----CCCCCCHHHHHHHHHHHhhcCCCCCCcce
Q 035594 90 WNPTPEQLLALEEMYRR----GTRTPSAEQIQHIASQLRRFGKIEGKNVF 135 (336)
Q Consensus 90 w~FT~EQLqiLEelF~~----g~~YPs~eqRqeIA~eL~~~G~LtEsqVq 135 (336)
|.+|++|+..|.++|.. +.+|.+.++...+-..++ +++..|.
T Consensus 1 w~ls~~~~~~~~~~F~~~D~d~dG~I~~~el~~~l~~~g----~~~~~~~ 46 (92)
T 1fi6_A 1 WKITDEQRQYYVNQFKTIQPDLNGFIPGSAAKEFFTKSK----LPILELS 46 (92)
T ss_dssp CCCCHHHHHHHHHHHTTTCCSTTCEEEHHHHHHHHHHHS----SCHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHCCCCCCcCcHHHHHHHHHHcC----CCHHHHH
Confidence 88999999999999975 455778887666665553 6655554
No 83
>1hlv_A CENP-B, major centromere autoantigen B; helix-turn-helix, protein-DNA complex, riken structural genomics/proteomics initiative, RSGI; 2.50A {Homo sapiens} SCOP: a.4.1.7 a.4.1.7 PDB: 1bw6_A
Probab=58.12 E-value=6.8 Score=30.22 Aligned_cols=51 Identities=14% Similarity=0.068 Sum_probs=36.5
Q ss_pred CCCCCCCHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHhhcCCCCCCcceecccchhhHH
Q 035594 87 SSRWNPTPEQLLALEEMYRRGTRTPSAEQIQHIASQLRRFGKIEGKNVFYWFQNHKARE 145 (336)
Q Consensus 87 R~Rw~FT~EQLqiLEelF~~g~~YPs~eqRqeIA~eL~~~G~LtEsqVqvWFQNRRARe 145 (336)
+.|..+|.+|-..+=+.+..+. .+.. .+||..++ |+.+.|..|..+++...
T Consensus 3 ~~r~~~t~e~K~~iv~~~~~~g-~~~~---~~~A~~~g----vs~stl~~~~~~~~~~~ 53 (131)
T 1hlv_A 3 PKRRQLTFREKSRIIQEVEENP-DLRK---GEIARRFN----IPPSTLSTILKNKRAIL 53 (131)
T ss_dssp CSSCCCCHHHHHHHHHHHHHCT-TSCH---HHHHHHHT----CCHHHHHHHHHTHHHHH
T ss_pred CcceeCCHHHHHHHHHHHHHCC-CCcH---HHHHHHhC----CCHHHHHHHHhchhhhc
Confidence 4688999999866666663333 3554 13899997 99999999987766543
No 84
>2glo_A Brinker CG9653-PA; protein-DNA complex, helix-turn-helix motif, transcription/DNA complex; NMR {Drosophila melanogaster}
Probab=57.52 E-value=4.7 Score=27.96 Aligned_cols=46 Identities=26% Similarity=0.350 Sum_probs=32.8
Q ss_pred CCCCCCHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHhhcCCCCCCcceeccc
Q 035594 88 SRWNPTPEQLLALEEMYRRGTRTPSAEQIQHIASQLRRFGKIEGKNVFYWFQ 139 (336)
Q Consensus 88 ~Rw~FT~EQLqiLEelF~~g~~YPs~eqRqeIA~eL~~~G~LtEsqVqvWFQ 139 (336)
.|..||+|.-....+.+..+. .......+||.+++ |+...|+.|..
T Consensus 2 ~r~~ys~efK~~~~~~~~~g~--s~~~~~~~vA~~~g----Is~~tl~~W~~ 47 (59)
T 2glo_A 2 SRRIFTPHFKLQVLESYRNDN--DCKGNQRATARKYN----IHRRQIQKWLQ 47 (59)
T ss_dssp CCCCCCHHHHHHHHHHHHHCT--TTTTCHHHHHHHTT----SCHHHHHHHHT
T ss_pred CCCcCCHHHHHHHHHHHHcCC--CcchHHHHHHHHHC----cCHHHHHHHHH
Confidence 466899998777766666655 31112457999998 98889999964
No 85
>2rgt_A Fusion of LIM/homeobox protein LHX3, linker, INSU enhancer protein ISL-1; protein-protein complex, LIM domain, Zn finger, activator, D binding; 2.05A {Mus musculus} PDB: 3mmk_A
Probab=56.64 E-value=0.13 Score=42.79 Aligned_cols=29 Identities=0% Similarity=-0.245 Sum_probs=21.3
Q ss_pred CCCCCCCCCCHHHHHHHHHHHhcCCCCCCH
Q 035594 84 PLGSSRWNPTPEQLLALEEMYRRGTRTPSA 113 (336)
Q Consensus 84 ~~rR~Rw~FT~EQLqiLEelF~~g~~YPs~ 113 (336)
..+|+|+.||.+||++|+..|+.++ ||..
T Consensus 135 ~~~rprt~~~~~q~~~l~~~f~~~~-~~~~ 163 (169)
T 2rgt_A 135 GGSGGGTPMVAASPERHDGGLQANP-VEVQ 163 (169)
T ss_dssp ------EEEECCCCEECCSSCCCCC-CCCC
T ss_pred CCcCCCCcccHHHHHHHHHHHhCCC-Cccc
Confidence 4589999999999999999999998 8863
No 86
>3hug_A RNA polymerase sigma factor; ECF sigma factor, zinc binding anti-sigma factor, oxidative transcription regulation; 2.35A {Mycobacterium tuberculosis}
Probab=52.70 E-value=7.8 Score=28.68 Aligned_cols=40 Identities=23% Similarity=0.273 Sum_probs=31.8
Q ss_pred CCCHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHhhcCCCCCCcceecccc
Q 035594 91 NPTPEQLLALEEMYRRGTRTPSAEQIQHIASQLRRFGKIEGKNVFYWFQN 140 (336)
Q Consensus 91 ~FT~EQLqiLEelF~~g~~YPs~eqRqeIA~eL~~~G~LtEsqVqvWFQN 140 (336)
.+++.|.++|.-.|-.+. . .++||..|+ |++..|+.+.+.
T Consensus 37 ~L~~~~r~vl~l~~~~g~--s----~~eIA~~lg----is~~tV~~~l~r 76 (92)
T 3hug_A 37 QLSAEHRAVIQRSYYRGW--S----TAQIATDLG----IAEGTVKSRLHY 76 (92)
T ss_dssp TSCHHHHHHHHHHHTSCC--C----HHHHHHHHT----SCHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHcCC--C----HHHHHHHHC----cCHHHHHHHHHH
Confidence 368899999999888777 2 345999998 999999976643
No 87
>1tc3_C Protein (TC3 transposase); DNA binding, helix-turn-helix, TC1/mariner family, complex (transposase/DNA), DNA binding protein/DNA complex; HET: DNA; 2.45A {Caenorhabditis elegans} SCOP: a.4.1.2
Probab=51.96 E-value=7.5 Score=24.00 Aligned_cols=39 Identities=8% Similarity=0.133 Sum_probs=29.0
Q ss_pred CCCHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHhhcCCCCCCcceeccc
Q 035594 91 NPTPEQLLALEEMYRRGTRTPSAEQIQHIASQLRRFGKIEGKNVFYWFQ 139 (336)
Q Consensus 91 ~FT~EQLqiLEelF~~g~~YPs~eqRqeIA~eL~~~G~LtEsqVqvWFQ 139 (336)
.+++++...+-.++..+. + ..+||+.|+ |+..-|+.|..
T Consensus 5 ~l~~~~~~~i~~~~~~g~---s---~~~IA~~lg----is~~Tv~~~~~ 43 (51)
T 1tc3_C 5 ALSDTERAQLDVMKLLNV---S---LHEMSRKIS----RSRHCIRVYLK 43 (51)
T ss_dssp CCCHHHHHHHHHHHHTTC---C---HHHHHHHHT----CCHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHcCC---C---HHHHHHHHC----cCHHHHHHHHh
Confidence 567877766666776665 2 446999998 99999998874
No 88
>2elh_A CG11849-PA, LD40883P; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Drosophila melanogaster}
Probab=48.59 E-value=9.9 Score=28.24 Aligned_cols=43 Identities=12% Similarity=0.186 Sum_probs=31.4
Q ss_pred CCCCCCCCHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHhhcCCCCCCcceecc
Q 035594 86 GSSRWNPTPEQLLALEEMYRRGTRTPSAEQIQHIASQLRRFGKIEGKNVFYWF 138 (336)
Q Consensus 86 rR~Rw~FT~EQLqiLEelF~~g~~YPs~eqRqeIA~eL~~~G~LtEsqVqvWF 138 (336)
++.+..||+++....-+++..+. . ..+||.+++ |+...|+.|.
T Consensus 17 ~~~~~~ys~e~k~~~v~~~~~g~--s----~~~iA~~~g----Is~sTl~rW~ 59 (87)
T 2elh_A 17 KRPLRSLTPRDKIHAIQRIHDGE--S----KASVARDIG----VPESTLRGWC 59 (87)
T ss_dssp SSCCSSCCHHHHHHHHHHHHHTC--C----HHHHHHHHT----CCHHHHHHHH
T ss_pred CCCCCCCCHHHHHHHHHHHHCCC--C----HHHHHHHHC----cCHHHHHHHH
Confidence 45677899999655555666554 2 346899998 9888999996
No 89
>2o8x_A Probable RNA polymerase sigma-C factor; promoter recognition, transcription regulation, helix-turn-H motif, transcription; 3.00A {Mycobacterium tuberculosis}
Probab=47.12 E-value=7.6 Score=26.50 Aligned_cols=39 Identities=15% Similarity=-0.078 Sum_probs=31.1
Q ss_pred CCCHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHhhcCCCCCCcceeccc
Q 035594 91 NPTPEQLLALEEMYRRGTRTPSAEQIQHIASQLRRFGKIEGKNVFYWFQ 139 (336)
Q Consensus 91 ~FT~EQLqiLEelF~~g~~YPs~eqRqeIA~eL~~~G~LtEsqVqvWFQ 139 (336)
.+++.|..+|...|..+. .. ++||..|+ ++...|+.+.+
T Consensus 15 ~L~~~~r~il~l~~~~g~--s~----~eIA~~lg----is~~tv~~~~~ 53 (70)
T 2o8x_A 15 DLTTDQREALLLTQLLGL--SY----ADAAAVCG----CPVGTIRSRVA 53 (70)
T ss_dssp SSCHHHHHHHHHHHTSCC--CH----HHHHHHHT----SCHHHHHHHHH
T ss_pred hCCHHHHHHHHHHHHcCC--CH----HHHHHHHC----cCHHHHHHHHH
Confidence 367999999999887776 22 45999998 99999987654
No 90
>3i5g_B Myosin regulatory light chain LC-2, mantle muscle; rigor-like, squid, muscle myosin, contractIle protein; 2.60A {Todarodes pacificus} PDB: 3i5f_B 3i5h_B 3i5i_B
Probab=46.24 E-value=31 Score=27.34 Aligned_cols=38 Identities=18% Similarity=0.225 Sum_probs=29.2
Q ss_pred CCCCCCCHHHHHHHHHHHhc----CCCCCCHHHHHHHHHHHh
Q 035594 87 SSRWNPTPEQLLALEEMYRR----GTRTPSAEQIQHIASQLR 124 (336)
Q Consensus 87 R~Rw~FT~EQLqiLEelF~~----g~~YPs~eqRqeIA~eL~ 124 (336)
.+|..+|++|++.|.++|.. +.++.+..+...+-..|+
T Consensus 5 ~~~~~Lt~~qi~elk~~F~~~D~d~dG~I~~~El~~~l~~lg 46 (153)
T 3i5g_B 5 PRRVKLSQRQMQELKEAFTMIDQDRDGFIGMEDLKDMFSSLG 46 (153)
T ss_dssp --CTTCCHHHHHHHHHHHHHHCCSTTSCCCHHHHHHHHHHTT
T ss_pred ccccCCCHHHHHHHHHHHHHHCCCCCCeEcHHHHHHHHHHcC
Confidence 34667999999999999964 566789888777766665
No 91
>1c07_A Protein (epidermal growth factor receptor pathway substrate 15); calcium binding, signaling domain, NPF binding, FW binding, EF-hand, EH domain; NMR {Homo sapiens} SCOP: a.39.1.6
Probab=45.25 E-value=5.4 Score=29.56 Aligned_cols=43 Identities=12% Similarity=0.201 Sum_probs=30.0
Q ss_pred CCCCHHHHHHHHHHHhc----CCCCCCHHHHHHHHHHHhhcCCCCCCccee
Q 035594 90 WNPTPEQLLALEEMYRR----GTRTPSAEQIQHIASQLRRFGKIEGKNVFY 136 (336)
Q Consensus 90 w~FT~EQLqiLEelF~~----g~~YPs~eqRqeIA~eL~~~G~LtEsqVqv 136 (336)
|.+|++|.+.|+++|.. +.+|.+..+...+-..++ +++..|..
T Consensus 2 w~ls~~~~~~~~~~F~~~D~d~dG~I~~~el~~~l~~~g----~~~~~~~~ 48 (95)
T 1c07_A 2 WVVSPAEKAKYDEIFLKTDKDMDGFVSGLEVREIFLKTG----LPSTLLAH 48 (95)
T ss_dssp CSSCSHHHHHHHHHHHHHCTTCSSEECHHHHHHHHHTTT----CCHHHHHH
T ss_pred CcCCHHHHHHHHHHHHHhCCCCCCcEeHHHHHHHHHHcC----CCHHHHHH
Confidence 78899999999999954 456788876655544442 65555543
No 92
>3mzy_A RNA polymerase sigma-H factor; PSI, MCSG, structural genomics, midwest center for structura genomics, protein structure initiative; 2.50A {Fusobacterium nucleatum subsp}
Probab=44.32 E-value=11 Score=28.78 Aligned_cols=38 Identities=24% Similarity=0.096 Sum_probs=29.0
Q ss_pred CCCHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHhhcCCCCCCcceeccc
Q 035594 91 NPTPEQLLALEEMYRRGTRTPSAEQIQHIASQLRRFGKIEGKNVFYWFQ 139 (336)
Q Consensus 91 ~FT~EQLqiLEelF~~g~~YPs~eqRqeIA~eL~~~G~LtEsqVqvWFQ 139 (336)
.+++.|..+|. .|-.|. .- ++||..|+ |+...|+.+.+
T Consensus 109 ~L~~~~r~v~~-~~~~g~--s~----~EIA~~lg----is~~tV~~~~~ 146 (164)
T 3mzy_A 109 NFSKFEKEVLT-YLIRGY--SY----REIATILS----KNLKSIDNTIQ 146 (164)
T ss_dssp HSCHHHHHHHH-HHTTTC--CH----HHHHHHHT----CCHHHHHHHHH
T ss_pred hCCHHHHHHHH-HHHcCC--CH----HHHHHHHC----CCHHHHHHHHH
Confidence 46788888888 676665 23 45999998 99999987654
No 93
>2lhi_A Calmodulin, serine/threonine-protein phosphatase catalytic subunit A1; yeast calmodulin, CNA1, metal binding protein; NMR {Saccharomyces cerevisiae}
Probab=43.02 E-value=7.7 Score=31.50 Aligned_cols=36 Identities=19% Similarity=0.261 Sum_probs=28.9
Q ss_pred CCCCCHHHHHHHHHHHhc----CCCCCCHHHHHHHHHHHh
Q 035594 89 RWNPTPEQLLALEEMYRR----GTRTPSAEQIQHIASQLR 124 (336)
Q Consensus 89 Rw~FT~EQLqiLEelF~~----g~~YPs~eqRqeIA~eL~ 124 (336)
+..+|++|++.|.++|.. +.++.+..+...+-..|+
T Consensus 2 a~~Lt~eqi~elk~~F~~~D~d~dG~I~~~El~~~l~~lg 41 (176)
T 2lhi_A 2 SSNLTEEQIAEFKEAFALFDKDNNGSISSSELATVMRSLG 41 (176)
T ss_dssp CCCCCTTGGGHHHHHHHTTCSSCSSCBCHHHHHHHHHHHT
T ss_pred CCcCCHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHcC
Confidence 468999999999999964 566888888777766665
No 94
>1eh2_A EPS15; calcium binding, signaling domain, NPF binding, EF-hand, EH domain; NMR {Homo sapiens} SCOP: a.39.1.6 PDB: 2jxc_A 1f8h_A 1ff1_A
Probab=40.85 E-value=15 Score=28.50 Aligned_cols=44 Identities=11% Similarity=0.215 Sum_probs=31.2
Q ss_pred CCCCCCHHHHHHHHHHHhc---CCCCCCHHHHHHHHHHHhhcCCCCCCcce
Q 035594 88 SRWNPTPEQLLALEEMYRR---GTRTPSAEQIQHIASQLRRFGKIEGKNVF 135 (336)
Q Consensus 88 ~Rw~FT~EQLqiLEelF~~---g~~YPs~eqRqeIA~eL~~~G~LtEsqVq 135 (336)
..|.+|++|+..+.++|.. +.+|.+..+...+-..++ +++..|.
T Consensus 5 ~~w~ls~~e~~~~~~~F~~~D~~dG~Is~~el~~~l~~~g----l~~~el~ 51 (106)
T 1eh2_A 5 SPWAVKPEDKAKYDAIFDSLSPVNGFLSGDKVKPVLLNSK----LPVDILG 51 (106)
T ss_dssp -CCSSCHHHHHHHHHHHTTSCCSSSCCBHHHHHHHHHTTT----CCHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHhCCCCCeEcHHHHHHHHHHcC----CCHHHHH
Confidence 3589999999999999965 566788876555544443 6665555
No 95
>1fse_A GERE; helix-turn-helix DNA-binding protein transcriptional regulat transcription; 2.05A {Bacillus subtilis} SCOP: a.4.6.2
Probab=40.65 E-value=8.8 Score=26.45 Aligned_cols=49 Identities=22% Similarity=0.110 Sum_probs=34.8
Q ss_pred CCCCCCHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHhhcCCCCCCcceecccchhhHHHH
Q 035594 88 SRWNPTPEQLLALEEMYRRGTRTPSAEQIQHIASQLRRFGKIEGKNVFYWFQNHKARERQ 147 (336)
Q Consensus 88 ~Rw~FT~EQLqiLEelF~~g~~YPs~eqRqeIA~eL~~~G~LtEsqVqvWFQNRRAReKR 147 (336)
.-..+|+.|.++|.. |..+. .. .+||..|+ ++...|+.+.+.=+.|.+.
T Consensus 8 ~~~~L~~~e~~il~~-~~~g~--s~----~eIA~~l~----is~~tV~~~~~~~~~kl~~ 56 (74)
T 1fse_A 8 SKPLLTKREREVFEL-LVQDK--TT----KEIASELF----ISEKTVRNHISNAMQKLGV 56 (74)
T ss_dssp CCCCCCHHHHHHHHH-HTTTC--CH----HHHHHHHT----SCHHHHHHHHHHHHHHHTC
T ss_pred CCCCCCHHHHHHHHH-HHcCC--CH----HHHHHHHC----CCHHHHHHHHHHHHHHHCC
Confidence 345689999999988 44444 22 45999998 9999998877654444443
No 96
>2x48_A CAG38821; archeal virus, viral protein; 2.60A {Sulfolobus islandicus rod-shaped virusorganism_taxid}
Probab=39.44 E-value=6 Score=26.42 Aligned_cols=43 Identities=19% Similarity=0.350 Sum_probs=32.0
Q ss_pred CCCCCCC--HHHHHHHHHHHhcCCCCCCHHHHHHHHHHHhhcCCCCCCcceeccc
Q 035594 87 SSRWNPT--PEQLLALEEMYRRGTRTPSAEQIQHIASQLRRFGKIEGKNVFYWFQ 139 (336)
Q Consensus 87 R~Rw~FT--~EQLqiLEelF~~g~~YPs~eqRqeIA~eL~~~G~LtEsqVqvWFQ 139 (336)
+.|+..+ +++...+-.+|..+. + ..+||+.|+ |+...|+.|..
T Consensus 9 g~~~~l~~~~~~~~~i~~l~~~g~---s---~~eIA~~lg----is~~TV~~~l~ 53 (55)
T 2x48_A 9 GVRYYVESEDDLVSVAHELAKMGY---T---VQQIANALG----VSERKVRRYLE 53 (55)
T ss_dssp TEEEEECSHHHHHHHHHHHHHTTC---C---HHHHHHHHT----SCHHHHHHHHT
T ss_pred cHHHHHhcCHHHHHHHHHHHHcCC---C---HHHHHHHHC----cCHHHHHHHHH
Confidence 3445677 888888888887665 2 346999998 99998988864
No 97
>1je8_A Nitrate/nitrite response regulator protein NARL; protein-DNA complex, two-component response regulator, helix-turn-helix, DNA bending; 2.12A {Escherichia coli} SCOP: a.4.6.2 PDB: 1zg1_A 1zg5_A
Probab=37.56 E-value=7.6 Score=28.56 Aligned_cols=46 Identities=22% Similarity=0.202 Sum_probs=32.8
Q ss_pred CCCCCHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHhhcCCCCCCcceecccchhhHH
Q 035594 89 RWNPTPEQLLALEEMYRRGTRTPSAEQIQHIASQLRRFGKIEGKNVFYWFQNHKARE 145 (336)
Q Consensus 89 Rw~FT~EQLqiLEelF~~g~~YPs~eqRqeIA~eL~~~G~LtEsqVqvWFQNRRARe 145 (336)
-..+|+.|.++|.- |..|. .. ++||+.|+ |+...|+.+.++=+.|.
T Consensus 19 ~~~Lt~~e~~vl~l-~~~g~--s~----~eIA~~l~----is~~tV~~~l~r~~~kL 64 (82)
T 1je8_A 19 VNQLTPRERDILKL-IAQGL--PN----KMIARRLD----ITESTVKVHVKHMLKKM 64 (82)
T ss_dssp GGGSCHHHHHHHHH-HTTTC--CH----HHHHHHHT----SCHHHHHHHHHHHHHHT
T ss_pred HccCCHHHHHHHHH-HHcCC--CH----HHHHHHHC----cCHHHHHHHHHHHHHHH
Confidence 34589999999998 44554 23 45999998 99999987665444333
No 98
>3j04_B Myosin regulatory light chain 2, smooth muscle MA isoform; phosphorylation, 2D crystalline arrays, myosin regulation, M light chains, structural protein; 20.00A {Gallus gallus}
Probab=36.62 E-value=31 Score=25.36 Aligned_cols=47 Identities=6% Similarity=0.093 Sum_probs=33.5
Q ss_pred CCHHHHHHHHHHHhc----CCCCCCHHHHHHHHHHHhhcCCCCCCcceecccc
Q 035594 92 PTPEQLLALEEMYRR----GTRTPSAEQIQHIASQLRRFGKIEGKNVFYWFQN 140 (336)
Q Consensus 92 FT~EQLqiLEelF~~----g~~YPs~eqRqeIA~eL~~~G~LtEsqVqvWFQN 140 (336)
||++|++.|.++|.. +.++.+..+...+-..++. .+++..|...|..
T Consensus 1 ls~~~~~~l~~~F~~~D~d~~G~i~~~el~~~l~~~g~--~~~~~~~~~~~~~ 51 (143)
T 3j04_B 1 FDQSQIQEFKEAFNMIDQNRDGFIDKEDLHDMLASMGK--NPTDEYLEGMMSE 51 (143)
T ss_dssp CCHHHHHHHHHHHTTTCSSCTTCCCHHHHHHHHHHTSC--CCCHHHHHTTTTT
T ss_pred CCHHHHHHHHHHHHHhCCCCCCCcCHHHHHHHHHHhCC--CCCHHHHHHHHHh
Confidence 689999999999964 3557888877777666652 3555566655543
No 99
>3c57_A Two component transcriptional regulatory protein; response regulator, two-component regulatory system, DNA-BIN protein; 1.70A {Mycobacterium tuberculosis} PDB: 1zlk_A 1zlj_A
Probab=36.00 E-value=12 Score=28.32 Aligned_cols=43 Identities=19% Similarity=0.228 Sum_probs=31.7
Q ss_pred CCCHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHhhcCCCCCCcceecccchhhH
Q 035594 91 NPTPEQLLALEEMYRRGTRTPSAEQIQHIASQLRRFGKIEGKNVFYWFQNHKAR 144 (336)
Q Consensus 91 ~FT~EQLqiLEelF~~g~~YPs~eqRqeIA~eL~~~G~LtEsqVqvWFQNRRAR 144 (336)
.+|+.|.++|.-+ ..|. .. ++||..|+ |+...|+.+..+=+.|
T Consensus 27 ~Lt~~e~~vl~l~-~~g~--s~----~eIA~~l~----is~~tV~~~l~r~~~k 69 (95)
T 3c57_A 27 GLTDQERTLLGLL-SEGL--TN----KQIADRMF----LAEKTVKNYVSRLLAK 69 (95)
T ss_dssp CCCHHHHHHHHHH-HTTC--CH----HHHHHHHT----CCHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHH-HcCC--CH----HHHHHHHC----cCHHHHHHHHHHHHHH
Confidence 5899999999996 4444 22 46999998 9999998765543333
No 100
>1s7o_A Hypothetical UPF0122 protein SPY1201/SPYM3_0842/SPS1042/SPYM18_1152; putative DNA binding protein, structural genomics; 2.31A {Streptococcus pyogenes serotype M3} SCOP: a.4.13.3
Probab=35.80 E-value=19 Score=28.53 Aligned_cols=47 Identities=15% Similarity=0.135 Sum_probs=36.5
Q ss_pred CCCHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHhhcCCCCCCcceecccchhhHHHH
Q 035594 91 NPTPEQLLALEEMYRRGTRTPSAEQIQHIASQLRRFGKIEGKNVFYWFQNHKARERQ 147 (336)
Q Consensus 91 ~FT~EQLqiLEelF~~g~~YPs~eqRqeIA~eL~~~G~LtEsqVqvWFQNRRAReKR 147 (336)
.+++.|.++|.-.|..|. .. ++||..|+ ++...|+.|.+.=|.+-|+
T Consensus 22 ~L~~~~r~vl~l~y~~g~--s~----~EIA~~lg----iS~~tV~~~l~ra~~kLr~ 68 (113)
T 1s7o_A 22 LLTDKQMNYIELYYADDY--SL----AEIADEFG----VSRQAVYDNIKRTEKILET 68 (113)
T ss_dssp GSCHHHHHHHHHHHHTCC--CH----HHHHHHHT----CCHHHHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHcCC--CH----HHHHHHHC----cCHHHHHHHHHHHHHHHHH
Confidence 478999999999988887 23 45999998 9999999888655544443
No 101
>1iq3_A Ralbp1-interacting protein (partner of ralbp1); EF-hand domain, POB1 EH domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: a.39.1.6
Probab=35.34 E-value=5.6 Score=30.94 Aligned_cols=50 Identities=14% Similarity=0.151 Sum_probs=35.2
Q ss_pred CCCCCCCCCHHHHHHHHHHHhc----CCCCCCHHHHHHHHHHHhhcCCCCCCcceecc
Q 035594 85 LGSSRWNPTPEQLLALEEMYRR----GTRTPSAEQIQHIASQLRRFGKIEGKNVFYWF 138 (336)
Q Consensus 85 ~rR~Rw~FT~EQLqiLEelF~~----g~~YPs~eqRqeIA~eL~~~G~LtEsqVqvWF 138 (336)
.....|.+|++|...|.++|.. +.++.+.++... .|...| +++..|..+|
T Consensus 9 ~~~~~~~ls~~~~~~~~~~F~~~D~d~dG~Is~~el~~---~l~~~g-l~~~el~~i~ 62 (110)
T 1iq3_A 9 YPDEPWRITEEQREYYVNQFRSLQPDPSSFISGSVAKN---FFTKSK-LSIPELSYIW 62 (110)
T ss_dssp CCCSSCCCSSSSHHHHHHHHHHHCCSSSSEEEHHHHHH---HCCSSS-CSSCCHHHHH
T ss_pred CCCCCCcCCHHHHHHHHHHHHHHCCCCCCeEcHHHHHH---HHHHcC-CCHHHHHHHH
Confidence 4667899999999999999965 445677765444 444433 7777776544
No 102
>2jn6_A Protein CGL2762, transposase; GFT PSI-2, protein structure, structural genomics, protein structure initiative; NMR {Corynebacterium glutamicum} SCOP: a.4.1.19
Probab=35.22 E-value=16 Score=27.02 Aligned_cols=40 Identities=23% Similarity=0.329 Sum_probs=29.1
Q ss_pred CCCCCHHHHHHHHHHHh-c-CCCCCCHHHHHHHHHHHhhcCCCCCCcceecc
Q 035594 89 RWNPTPEQLLALEEMYR-R-GTRTPSAEQIQHIASQLRRFGKIEGKNVFYWF 138 (336)
Q Consensus 89 Rw~FT~EQLqiLEelF~-~-g~~YPs~eqRqeIA~eL~~~G~LtEsqVqvWF 138 (336)
|..||+++....-..+. . +. . +.+||..++ |+...|+.|.
T Consensus 3 r~~ys~e~k~~~v~~~~~~~g~--s----~~~ia~~~g----Is~~tl~rW~ 44 (97)
T 2jn6_A 3 TKTYSEEFKRDAVALYENSDGA--S----LQQIANDLG----INRVTLKNWI 44 (97)
T ss_dssp CCCCCHHHHHHHHHHHTTGGGS--C----HHHHHHHHT----SCHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHcCCC--h----HHHHHHHHC----cCHHHHHHHH
Confidence 46789998866666664 3 43 2 446999998 9888899885
No 103
>1p4w_A RCSB; solution structure, DNA binding domain, DNA binding protein; NMR {Erwinia amylovora} SCOP: a.4.6.2
Probab=33.89 E-value=19 Score=28.02 Aligned_cols=45 Identities=16% Similarity=0.063 Sum_probs=33.9
Q ss_pred CCCCCHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHhhcCCCCCCcceecccchhhH
Q 035594 89 RWNPTPEQLLALEEMYRRGTRTPSAEQIQHIASQLRRFGKIEGKNVFYWFQNHKAR 144 (336)
Q Consensus 89 Rw~FT~EQLqiLEelF~~g~~YPs~eqRqeIA~eL~~~G~LtEsqVqvWFQNRRAR 144 (336)
.-.+|+.|.++|.-++ .|. .. ++||+.|+ |++..|+++.++=+.|
T Consensus 32 ~~~Lt~re~~Vl~l~~-~G~--s~----~EIA~~L~----iS~~TV~~~l~ri~~K 76 (99)
T 1p4w_A 32 DKRLSPKESEVLRLFA-EGF--LV----TEIAKKLN----RSIKTISSQKKSAMMK 76 (99)
T ss_dssp SSSCCHHHHHHHHHHH-HTC--CH----HHHHHHHT----SCHHHHHHHHHHHHHH
T ss_pred cCCCCHHHHHHHHHHH-cCC--CH----HHHHHHHC----cCHHHHHHHHHHHHHH
Confidence 5679999999998865 555 23 56999998 9999999776644333
No 104
>2mys_C Myosin; muscle protein, motor protein; HET: MLY; 2.80A {Gallus gallus} SCOP: a.39.1.5 PDB: 1m8q_C* 1mvw_C* 1o18_F* 1o19_C* 1o1a_C* 1o1b_C* 1o1c_C* 1o1d_C* 1o1e_C* 1o1f_C* 1o1g_C*
Probab=32.16 E-value=27 Score=25.57 Aligned_cols=45 Identities=16% Similarity=0.140 Sum_probs=30.7
Q ss_pred CCHHHHHHHHHHHhc----CCCCCCHHHHHHHHHHHhhcCCCCCCcceecc
Q 035594 92 PTPEQLLALEEMYRR----GTRTPSAEQIQHIASQLRRFGKIEGKNVFYWF 138 (336)
Q Consensus 92 FT~EQLqiLEelF~~----g~~YPs~eqRqeIA~eL~~~G~LtEsqVqvWF 138 (336)
+|++|++.|+++|.. +.++.+..+...+...++. .+++..|...|
T Consensus 2 l~~~~~~~l~~~F~~~D~~~~G~i~~~el~~~l~~~~~--~~~~~~~~~l~ 50 (149)
T 2mys_C 2 FSKAAADDFKEAFLLFDRTGDAKITASQVGDIARALGQ--NPTNAEINKIL 50 (149)
T ss_pred CCHHHHHHHHHHHHHhCCCCCCcCcHHHHHHHHHHhCC--CCCHHHHHHHH
Confidence 789999999999953 4457788877776666642 24555555444
No 105
>2rnj_A Response regulator protein VRAR; HTH LUXR-type domain, DNA binding domain, activator, antibiotic resistance, cytoplasm, DNA-binding; NMR {Staphylococcus aureus}
Probab=31.77 E-value=8.3 Score=28.57 Aligned_cols=45 Identities=24% Similarity=0.114 Sum_probs=32.1
Q ss_pred CCCCHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHhhcCCCCCCcceecccchhhHH
Q 035594 90 WNPTPEQLLALEEMYRRGTRTPSAEQIQHIASQLRRFGKIEGKNVFYWFQNHKARE 145 (336)
Q Consensus 90 w~FT~EQLqiLEelF~~g~~YPs~eqRqeIA~eL~~~G~LtEsqVqvWFQNRRARe 145 (336)
-.+|+.|.++|.-+ ..|. ...+ ||..|+ |+...|+.+..+=+.|.
T Consensus 28 ~~Lt~~e~~vl~l~-~~g~--s~~e----IA~~l~----is~~tV~~~l~r~~~kL 72 (91)
T 2rnj_A 28 EMLTEREMEILLLI-AKGY--SNQE----IASASH----ITIKTVKTHVSNILSKL 72 (91)
T ss_dssp GGCCSHHHHHHHHH-HTTC--CTTH----HHHHHT----CCHHHHHHHHHHHHHHT
T ss_pred hcCCHHHHHHHHHH-HcCC--CHHH----HHHHHC----cCHHHHHHHHHHHHHHH
Confidence 35788999999884 4444 4444 999998 99999987665433333
No 106
>1xsv_A Hypothetical UPF0122 protein SAV1236; helix-turn-helix, putative DNA-binding protein, signal recognition particle, unknown function; 1.70A {Staphylococcus aureus subsp} SCOP: a.4.13.3
Probab=30.53 E-value=23 Score=27.85 Aligned_cols=47 Identities=17% Similarity=0.111 Sum_probs=35.8
Q ss_pred CCCHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHhhcCCCCCCcceecccchhhHHHH
Q 035594 91 NPTPEQLLALEEMYRRGTRTPSAEQIQHIASQLRRFGKIEGKNVFYWFQNHKARERQ 147 (336)
Q Consensus 91 ~FT~EQLqiLEelF~~g~~YPs~eqRqeIA~eL~~~G~LtEsqVqvWFQNRRAReKR 147 (336)
.+++.|..+|.-.|..+. .. ++||..|+ ++...|+.+.+.=|.+-|+
T Consensus 25 ~L~~~~r~vl~l~~~~g~--s~----~EIA~~lg----iS~~tV~~~l~ra~~kLr~ 71 (113)
T 1xsv_A 25 LLTNKQRNYLELFYLEDY--SL----SEIADTFN----VSRQAVYDNIRRTGDLVED 71 (113)
T ss_dssp GSCHHHHHHHHHHHTSCC--CH----HHHHHHTT----CCHHHHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHcCC--CH----HHHHHHHC----cCHHHHHHHHHHHHHHHHH
Confidence 378899999999988887 23 45999998 9999999877654444444
No 107
>3i5g_C Myosin catalytic light chain LC-1, mantle muscle; rigor-like, squid, muscle myosin, contractIle protein; 2.60A {Todarodes pacificus} PDB: 3i5f_C 3i5h_C 3i5i_C
Probab=30.16 E-value=18 Score=28.94 Aligned_cols=43 Identities=12% Similarity=0.159 Sum_probs=28.8
Q ss_pred CCCHHHHHHHHHHHh------cCCCCCCHHHHHHHHHHHhhcCCCCCCcce
Q 035594 91 NPTPEQLLALEEMYR------RGTRTPSAEQIQHIASQLRRFGKIEGKNVF 135 (336)
Q Consensus 91 ~FT~EQLqiLEelF~------~g~~YPs~eqRqeIA~eL~~~G~LtEsqVq 135 (336)
-+|++|++.|.++|. .+.++.+..+...+-+.|+. .+++..|+
T Consensus 2 qLt~eqi~elre~F~~fD~~~d~dG~I~~~El~~~lr~lG~--~~t~~el~ 50 (159)
T 3i5g_C 2 QLTKDEIEEVREVFDLFDFWDGRDGDVDAAKVGDLLRCLGM--NPTEAQVH 50 (159)
T ss_dssp CCCHHHHHHHHHHHHHHHHHTTSSSCEEGGGHHHHHHHTTC--CCCHHHHH
T ss_pred CCCHHHHHHHHHHHHHHCcCCCCCCeECHHHHHHHHHHcCC--CCCHHHHH
Confidence 379999999999996 24557887776666565652 24444443
No 108
>1u78_A TC3 transposase, transposable element TC3 transposase; transposon DNA, bipartite DNA-binding, HTH- motif, DNA binding protein/DNA complex; 2.69A {Caenorhabditis elegans} SCOP: a.4.1.2 a.4.1.2
Probab=29.33 E-value=24 Score=26.76 Aligned_cols=41 Identities=7% Similarity=0.118 Sum_probs=32.6
Q ss_pred CCCCHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHhhcCCCCCCcceecccc
Q 035594 90 WNPTPEQLLALEEMYRRGTRTPSAEQIQHIASQLRRFGKIEGKNVFYWFQN 140 (336)
Q Consensus 90 w~FT~EQLqiLEelF~~g~~YPs~eqRqeIA~eL~~~G~LtEsqVqvWFQN 140 (336)
..+|.++...+-.++..|. + ..+||..|+ ++.+.|+.|++.
T Consensus 5 ~~~s~~~r~~i~~~~~~G~---s---~~~ia~~lg----is~~Tv~r~~~~ 45 (141)
T 1u78_A 5 SALSDTERAQLDVMKLLNV---S---LHEMSRKIS----RSRHCIRVYLKD 45 (141)
T ss_dssp CCCCHHHHHHHHHHHHTTC---C---HHHHHHHHT----CCHHHHHHHHHS
T ss_pred ccCCHHHHHHHHHHHHcCC---C---HHHHHHHHC----cCHHHHHHHHHc
Confidence 5688998888888887776 2 345899997 999999999863
No 109
>2joj_A Centrin protein; N-terminal domain, centrin solution structure, EF-hand calcium binding protein, cell cycle; NMR {Euplotes octocarinatus}
Probab=29.30 E-value=15 Score=24.64 Aligned_cols=42 Identities=12% Similarity=0.143 Sum_probs=28.3
Q ss_pred CCHHHHHHHHHHHhc----CCCCCCHHHHHHHHHHHhhcCCCCCCcce
Q 035594 92 PTPEQLLALEEMYRR----GTRTPSAEQIQHIASQLRRFGKIEGKNVF 135 (336)
Q Consensus 92 FT~EQLqiLEelF~~----g~~YPs~eqRqeIA~eL~~~G~LtEsqVq 135 (336)
+|++|+..|.++|.. +.++.+..+...+...++ ..+++..|.
T Consensus 1 ls~~~~~~l~~~F~~~D~d~~G~i~~~el~~~l~~~g--~~~~~~~~~ 46 (77)
T 2joj_A 1 LSEEQKQEIKEAFDLFDTNKTGSIDYHELKVAMRALG--FDVKKPEIL 46 (77)
T ss_dssp CCHHHHHHHHHHHHHHCCSSSSEEEHHHHHHHHHHHT--CCCHHHHHH
T ss_pred CCHHHHHHHHHHHHHhCCCCCCCCcHHHHHHHHHHhC--CCCCHHHHH
Confidence 578999999999953 445778887777666664 124444444
No 110
>3fwb_A Cell division control protein 31; gene gating, complex, cell cycle, cell division, mitosis, MR transport, nuclear pore complex, nucleus, phosphoprotein; 2.50A {Saccharomyces cerevisiae} SCOP: a.39.1.5 PDB: 2gv5_A 2doq_A 3fwc_A
Probab=28.91 E-value=36 Score=25.39 Aligned_cols=40 Identities=13% Similarity=0.035 Sum_probs=30.1
Q ss_pred CCCCCCCCCHHHHHHHHHHHhc----CCCCCCHHHHHHHHHHHh
Q 035594 85 LGSSRWNPTPEQLLALEEMYRR----GTRTPSAEQIQHIASQLR 124 (336)
Q Consensus 85 ~rR~Rw~FT~EQLqiLEelF~~----g~~YPs~eqRqeIA~eL~ 124 (336)
....+..+|++|+..|.++|.. +.++.+..+...+-..++
T Consensus 10 ~~~~~~~l~~~~~~~l~~~F~~~D~~~~G~i~~~e~~~~l~~~~ 53 (161)
T 3fwb_A 10 SGPLNSELLEEQKQEIYEAFSLFDMNNDGFLDYHELKVAMKALG 53 (161)
T ss_dssp TTTTTTTSCHHHHHHHHHHHHHHCTTSSSEECHHHHHHHHHHTT
T ss_pred cCCCCCCCCHHHHHHHHHHHHHHCCCCCCcCcHHHHHHHHHHcC
Confidence 3556678999999999999974 445778887766666654
No 111
>1x3u_A Transcriptional regulatory protein FIXJ; helix-turn-helix; NMR {Sinorhizobium meliloti}
Probab=28.85 E-value=8.7 Score=27.01 Aligned_cols=40 Identities=23% Similarity=0.187 Sum_probs=29.3
Q ss_pred CCHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHhhcCCCCCCcceecccchh
Q 035594 92 PTPEQLLALEEMYRRGTRTPSAEQIQHIASQLRRFGKIEGKNVFYWFQNHK 142 (336)
Q Consensus 92 FT~EQLqiLEelF~~g~~YPs~eqRqeIA~eL~~~G~LtEsqVqvWFQNRR 142 (336)
+|+.|.++|.- |..+. .. ++||..|+ ++...|+.+...=+
T Consensus 17 L~~~e~~vl~l-~~~g~--s~----~eIA~~l~----is~~tV~~~~~r~~ 56 (79)
T 1x3u_A 17 LSERERQVLSA-VVAGL--PN----KSIAYDLD----ISPRTVEVHRANVM 56 (79)
T ss_dssp HCHHHHHHHHH-HTTTC--CH----HHHHHHTT----SCHHHHHHHHHHHH
T ss_pred CCHHHHHHHHH-HHcCC--CH----HHHHHHHC----cCHHHHHHHHHHHH
Confidence 67889999988 54454 23 35999998 99999987665433
No 112
>3q0w_A HTH-type transcriptional regulator EThr; TETR family, transcriptional repressor, transcription-transc inhibitor complex; HET: LL5; 1.60A {Mycobacterium tuberculosis} PDB: 3o8g_A* 3o8h_A* 3q0u_A* 3q0v_A* 3g1m_A* 3q3s_A* 3sdg_A* 3sfi_A* 1u9n_A* 1u9o_A* 3tp3_A 3qpl_A 3g1l_A* 1t56_A 3tp0_A*
Probab=28.17 E-value=7.8 Score=31.68 Aligned_cols=41 Identities=15% Similarity=0.340 Sum_probs=31.4
Q ss_pred HHHHHHHHhcCCCCCCHHHHHHHHHHHhhcCCCCCCcceecccchhh
Q 035594 97 LLALEEMYRRGTRTPSAEQIQHIASQLRRFGKIEGKNVFYWFQNHKA 143 (336)
Q Consensus 97 LqiLEelF~~g~~YPs~eqRqeIA~eL~~~G~LtEsqVqvWFQNRRA 143 (336)
|..-.++|...- | ..-...+||++.+ |+..-|++.|.||..
T Consensus 50 l~aA~~lf~e~G-~-~~~t~~~IA~~aG----vs~~tlY~~F~sK~~ 90 (236)
T 3q0w_A 50 LATAENLLEDRP-L-ADISVDDLAKGAG----ISRPTFYFYFPSKEA 90 (236)
T ss_dssp HHHHHHHHHHSC-G-GGCCHHHHHHHHT----CCHHHHHHHCSSHHH
T ss_pred HHHHHHHHHHcC-c-ccCCHHHHHHHhC----CcHHHHHHHCCCHHH
Confidence 445566776655 4 4445778999998 999999999999875
No 113
>1ku3_A Sigma factor SIGA; helix-turn-helix, transcription; 1.80A {Thermus aquaticus} SCOP: a.4.13.2 PDB: 1ku7_A 1rio_H 3n97_A*
Probab=28.14 E-value=22 Score=25.04 Aligned_cols=39 Identities=5% Similarity=0.055 Sum_probs=30.5
Q ss_pred CCCHHHHHHHHHHHh----cCCCCCCHHHHHHHHHHHhhcCCCCCCcceeccc
Q 035594 91 NPTPEQLLALEEMYR----RGTRTPSAEQIQHIASQLRRFGKIEGKNVFYWFQ 139 (336)
Q Consensus 91 ~FT~EQLqiLEelF~----~g~~YPs~eqRqeIA~eL~~~G~LtEsqVqvWFQ 139 (336)
.+++.|..+|...|. .+. .- ++||..|+ ++...|+.+..
T Consensus 10 ~L~~~er~il~l~~~l~~~~~~--s~----~eIA~~l~----is~~tV~~~~~ 52 (73)
T 1ku3_A 10 KLSEREAMVLKMRKGLIDGREH--TL----EEVGAYFG----VTRERIRQIEN 52 (73)
T ss_dssp TSCHHHHHHHHHHHTTTTSSCC--CH----HHHHHHHT----CCHHHHHHHHH
T ss_pred hCCHHHHHHHHHHHhcccCCCC--CH----HHHHHHHC----CCHHHHHHHHH
Confidence 478999999999996 454 22 35999998 99999987653
No 114
>2jpc_A SSRB; DNA binding protein, structural genomics, PSI-2, protein structure initiative; NMR {Salmonella typhimurium}
Probab=27.37 E-value=14 Score=24.86 Aligned_cols=42 Identities=19% Similarity=0.098 Sum_probs=29.0
Q ss_pred HHHHHHHHHHhcCCCCCCHHHHHHHHHHHhhcCCCCCCcceecccchhhHHHH
Q 035594 95 EQLLALEEMYRRGTRTPSAEQIQHIASQLRRFGKIEGKNVFYWFQNHKARERQ 147 (336)
Q Consensus 95 EQLqiLEelF~~g~~YPs~eqRqeIA~eL~~~G~LtEsqVqvWFQNRRAReKR 147 (336)
.|.++|.- +..|. ...+ ||..|+ +++..|+.+.++=+.|.+-
T Consensus 2 re~~vl~l-~~~g~--s~~e----IA~~l~----is~~tV~~~~~~~~~kl~~ 43 (61)
T 2jpc_A 2 RERQVLKL-IDEGY--TNHG----ISEKLH----ISIKTVETHRMNMMRKLQV 43 (61)
T ss_dssp HHHHHHHH-HHTSC--CSHH----HHHHTC----SCHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHH-HHcCC--CHHH----HHHHhC----CCHHHHHHHHHHHHHHHCC
Confidence 46778877 55555 4444 999998 9999999776654444433
No 115
>2kgr_A Intersectin-1; structure, alternative splicing, calcium, cell junction, cell projection, coiled coil, endocytosis, membrane, phosphoprotein; NMR {Homo sapiens}
Probab=27.31 E-value=22 Score=27.22 Aligned_cols=34 Identities=12% Similarity=0.255 Sum_probs=25.9
Q ss_pred CCCCCCHHHHHHHHHHHhc----CCCCCCHHHHHHHHH
Q 035594 88 SRWNPTPEQLLALEEMYRR----GTRTPSAEQIQHIAS 121 (336)
Q Consensus 88 ~Rw~FT~EQLqiLEelF~~----g~~YPs~eqRqeIA~ 121 (336)
.-|.+|++|.+.|.++|.. +.+|.+..+...+-.
T Consensus 4 ~~w~ls~~~~~~l~~~F~~~D~d~dG~I~~~El~~~l~ 41 (111)
T 2kgr_A 4 AEWAVPQSSRLKYRQLFNSHDKTMSGHLTGPQARTILM 41 (111)
T ss_dssp CCSSSCHHHHHHHHHHHHTTSCSSCCEEEHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHHCCCCCCcCcHHHHHHHHH
Confidence 6799999999999999975 455677776555444
No 116
>2opo_A Polcalcin CHE A 3; calcium-binding protein, dimer, domain-swapping, EF-hand; 1.75A {Chenopodium album} SCOP: a.39.1.10 PDB: 1h4b_A
Probab=26.37 E-value=17 Score=25.19 Aligned_cols=45 Identities=20% Similarity=0.387 Sum_probs=27.6
Q ss_pred CCCHHHHHHHHHHHhc----CCCCCCHHHHHHHHHHHhhcCCCCCCcceecc
Q 035594 91 NPTPEQLLALEEMYRR----GTRTPSAEQIQHIASQLRRFGKIEGKNVFYWF 138 (336)
Q Consensus 91 ~FT~EQLqiLEelF~~----g~~YPs~eqRqeIA~eL~~~G~LtEsqVqvWF 138 (336)
.+|++|+..|..+|.. +.++.+..+...+-..+ |.+++..|..+|
T Consensus 4 ~~~~~~~~~l~~~F~~~D~d~~G~i~~~el~~~l~~~---g~~~~~~~~~~~ 52 (86)
T 2opo_A 4 EDTPQDIADRERIFKRFDTNGDGKISSSELGDALKTL---GSVTPDEVRRMM 52 (86)
T ss_dssp --CHHHHHHHHHHHHHHCTTCSSEEEHHHHHHHHHTT---TTCCHHHHHHHH
T ss_pred cCCHhhHHHHHHHHHHHCCCCCCCcCHHHHHHHHHHc---CCCCHHHHHHHH
Confidence 5789999999999964 44567776655544443 345555554333
No 117
>1wdc_B Scallop myosin; calcium binding protein, muscle protein; 2.00A {Argopecten irradians} SCOP: a.39.1.5 PDB: 1kk7_Y 1kqm_B* 1kwo_B* 1l2o_B* 1qvi_Y* 1s5g_Y* 1sr6_B 1b7t_Y 3jtd_B 3jvt_B 1scm_B 1kk8_B* 1dfk_Y 1dfl_Y* 2w4t_Y 2w4v_Y 2w4w_Y 2otg_B* 2os8_B* 3pn7_B ...
Probab=25.98 E-value=48 Score=24.88 Aligned_cols=48 Identities=21% Similarity=0.242 Sum_probs=34.1
Q ss_pred CCCCHHHHHHHHHHHhc----CCCCCCHHHHHHHHHHHhhcCCCCCCcceeccc
Q 035594 90 WNPTPEQLLALEEMYRR----GTRTPSAEQIQHIASQLRRFGKIEGKNVFYWFQ 139 (336)
Q Consensus 90 w~FT~EQLqiLEelF~~----g~~YPs~eqRqeIA~eL~~~G~LtEsqVqvWFQ 139 (336)
..+|++|+..|+++|.. +.++.+..+...+-..++. .+++..|...|.
T Consensus 10 ~~l~~~~~~~l~~~F~~~D~d~~G~i~~~el~~~l~~~g~--~~~~~~~~~~~~ 61 (156)
T 1wdc_B 10 TKLPQKQIQEMKEAFSMIDVDRDGFVSKEDIKAISEQLGR--APDDKELTAMLK 61 (156)
T ss_dssp --CCHHHHHHHHHHHHHHCTTCSSSCCHHHHHHHHHHHSS--CCCHHHHHHHHT
T ss_pred ccCCHHHHHHHHHHHHHHCCCCCCcCcHHHHHHHHHHhCC--CCCHHHHHHHHH
Confidence 46899999999999964 4567888887777777652 356666666664
No 118
>2p7v_B Sigma-70, RNA polymerase sigma factor RPOD; RSD, regulator of sigma 70, sigma 70 domain 4, transcription, regulation, helix-turn-helix; 2.60A {Escherichia coli} SCOP: a.4.13.2
Probab=25.71 E-value=16 Score=25.45 Aligned_cols=38 Identities=8% Similarity=0.073 Sum_probs=29.4
Q ss_pred CCCHHHHHHHHHHH----hcCCCCCCHHHHHHHHHHHhhcCCCCCCcceecc
Q 035594 91 NPTPEQLLALEEMY----RRGTRTPSAEQIQHIASQLRRFGKIEGKNVFYWF 138 (336)
Q Consensus 91 ~FT~EQLqiLEelF----~~g~~YPs~eqRqeIA~eL~~~G~LtEsqVqvWF 138 (336)
..++.|.++|...| ..+. .. ++||..|+ ++...|+.+.
T Consensus 5 ~L~~~er~il~l~~~l~~~~g~--s~----~eIA~~lg----is~~tV~~~~ 46 (68)
T 2p7v_B 5 GLTAREAKVLRMRFGIDMNTDY--TL----EEVGKQFD----VTRERIRQIE 46 (68)
T ss_dssp CCCHHHHHHHHHHTTTTSSSCC--CH----HHHHHHHT----CCHHHHHHHH
T ss_pred cCCHHHHHHHHHHHccCCCCCC--CH----HHHHHHHC----cCHHHHHHHH
Confidence 46889999999999 3444 22 45999998 9999998654
No 119
>1j7q_A CAVP, calcium vector protein; EF-hand family, calcium binding protein, metal binding protein; NMR {Branchiostoma lanceolatum} SCOP: a.39.1.5 PDB: 1j7r_A
Probab=25.55 E-value=37 Score=23.42 Aligned_cols=43 Identities=7% Similarity=0.118 Sum_probs=30.3
Q ss_pred CCCCCHHHHHHHHHHHhc----CCCCCCHHHHHHHHHHHhhcCCCCCCc
Q 035594 89 RWNPTPEQLLALEEMYRR----GTRTPSAEQIQHIASQLRRFGKIEGKN 133 (336)
Q Consensus 89 Rw~FT~EQLqiLEelF~~----g~~YPs~eqRqeIA~eL~~~G~LtEsq 133 (336)
...+|++|+..|.++|.. +.++.+..+...+-..++. .+++..
T Consensus 5 ~~~l~~~~~~~l~~~F~~~D~d~~G~I~~~el~~~l~~~g~--~~~~~~ 51 (86)
T 1j7q_A 5 ARALGPEEKDECMKIFDIFDRNAENIAPVSDTMDMLTKLGQ--TYTKRE 51 (86)
T ss_dssp CCCCSSTHHHHHHHHHHHHSTTTTSCBCHHHHHHHHHHTSC--CCSHHH
T ss_pred cccCCHHHHHHHHHHHHHhCCCCCCcCcHHHHHHHHHHHcC--CCCHHH
Confidence 345789999999999964 4557888877777666652 344444
No 120
>1or7_A Sigma-24, RNA polymerase sigma-E factor; regulation, DNA-binding, transmembrane, transcription; 2.00A {Escherichia coli} SCOP: a.4.13.2 a.177.1.1 PDB: 2h27_A
Probab=25.30 E-value=29 Score=27.55 Aligned_cols=46 Identities=11% Similarity=-0.017 Sum_probs=32.6
Q ss_pred CCHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHhhcCCCCCCcceecccchhhHHHH
Q 035594 92 PTPEQLLALEEMYRRGTRTPSAEQIQHIASQLRRFGKIEGKNVFYWFQNHKARERQ 147 (336)
Q Consensus 92 FT~EQLqiLEelF~~g~~YPs~eqRqeIA~eL~~~G~LtEsqVqvWFQNRRAReKR 147 (336)
+++.|..+|.-.|-.+. +- ++||..|+ ++...|+.+.+.=|.|.|+
T Consensus 141 L~~~~r~vl~l~~~~g~--s~----~EIA~~lg----is~~tV~~~l~ra~~~Lr~ 186 (194)
T 1or7_A 141 LPEDLRMAITLRELDGL--SY----EEIAAIMD----CPVGTVRSRIFRAREAIDN 186 (194)
T ss_dssp SCHHHHHHHHHHHTTCC--CH----HHHHHHTT----SCHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHhHHHHHcCC--CH----HHHHHHHC----CCHHHHHHHHHHHHHHHHH
Confidence 56778888888777766 23 35999998 9999998876544444433
No 121
>3fia_A Intersectin-1; EH 1 domain, NESG, structural genomics, PSI- 2, protein structure initiative, northeast structural genomics consortium; 1.45A {Homo sapiens} PDB: 2khn_A
Probab=25.27 E-value=25 Score=28.89 Aligned_cols=34 Identities=12% Similarity=0.205 Sum_probs=24.4
Q ss_pred CCCCCCCCHHHHHHHHHHHhcC---CCCCCHHHHHHH
Q 035594 86 GSSRWNPTPEQLLALEEMYRRG---TRTPSAEQIQHI 119 (336)
Q Consensus 86 rR~Rw~FT~EQLqiLEelF~~g---~~YPs~eqRqeI 119 (336)
....|..|+++.+.++++|..- .+|.+.++...+
T Consensus 21 ~~~~W~it~ee~~~y~~iF~~lD~~dG~Isg~elr~~ 57 (121)
T 3fia_A 21 SLDTWAITVEERAKHDQQFHSLKPISGFITGDQARNF 57 (121)
T ss_dssp CTTTSCCCHHHHHHHHHHHHHTCCBTTBEEHHHHHHH
T ss_pred CCCCCCCCHHHHHHHHHHHHHhCCCCCeECHHHHHHH
Confidence 4568999999999999999753 345555543333
No 122
>1rp3_A RNA polymerase sigma factor sigma-28 (FLIA); transcription; 2.30A {Aquifex aeolicus} SCOP: a.4.13.1 a.4.13.2 a.177.1.1 PDB: 1sc5_A
Probab=24.09 E-value=35 Score=27.71 Aligned_cols=46 Identities=15% Similarity=0.166 Sum_probs=33.5
Q ss_pred CCCHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHhhcCCCCCCcceecccchhhHHH
Q 035594 91 NPTPEQLLALEEMYRRGTRTPSAEQIQHIASQLRRFGKIEGKNVFYWFQNHKARER 146 (336)
Q Consensus 91 ~FT~EQLqiLEelF~~g~~YPs~eqRqeIA~eL~~~G~LtEsqVqvWFQNRRAReK 146 (336)
.+++.|..+|.-.|-.+. +- ++||..|+ |+...|+.+.+.=|.|.|
T Consensus 187 ~L~~~~r~vl~l~~~~g~--s~----~EIA~~lg----is~~~V~~~~~ra~~~Lr 232 (239)
T 1rp3_A 187 KLPEREKLVIQLIFYEEL--PA----KEVAKILE----TSVSRVSQLKAKALERLR 232 (239)
T ss_dssp TSCHHHHHHHHHHHTSCC--CH----HHHHHHTT----SCHHHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHhcCC--CH----HHHHHHhC----CCHHHHHHHHHHHHHHHH
Confidence 367888899998887766 23 35999998 999999877654443333
No 123
>3lph_A Protein REV; helix-loop-helix, RNA-binding arginine rich motif, protein oligomerization, AIDS, HOST cytoplasm, HOST nucleus; 2.50A {Human immunodeficiency virus type 1}
Probab=23.53 E-value=32 Score=26.96 Aligned_cols=39 Identities=26% Similarity=0.441 Sum_probs=27.3
Q ss_pred HHHHHHHHhcCCCCCCHHHHHHHHHHHhhcCCCCCCcceecccchhhHHHHhhhhhhh
Q 035594 97 LLALEEMYRRGTRTPSAEQIQHIASQLRRFGKIEGKNVFYWFQNHKARERQKRRRWES 154 (336)
Q Consensus 97 LqiLEelF~~g~~YPs~eqRqeIA~eL~~~G~LtEsqVqvWFQNRRAReKRKrRr~e~ 154 (336)
+.++.-+|+.++ ||+.+ =+.+-+ -|||-|||+.+++..+
T Consensus 18 vRiIkiLyQSNP-~P~p~----GTrqaR--------------RNRRRRWR~RQrQI~~ 56 (72)
T 3lph_A 18 VRLIKFLYQSNP-PPNPE----GTRQAR--------------RNRRRRWRERQRQIHS 56 (72)
T ss_dssp HHHHHHHHHTCC-CCCCC----SCHHHH--------------HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHccCC-CCCCC----CchHHH--------------HHHHHHHHHHHHHHHH
Confidence 456778899999 99876 122221 3888899988888754
No 124
>1avs_A Troponin C; muscle contraction, calcium-activated, E-F hand calcium-binding protein; 1.75A {Gallus gallus} SCOP: a.39.1.5 PDB: 1blq_A 1skt_A 1tnp_A 1tnq_A 1zac_A 1smg_A 1npq_A 1trf_A
Probab=23.40 E-value=34 Score=23.92 Aligned_cols=46 Identities=9% Similarity=0.101 Sum_probs=31.1
Q ss_pred CCCHHHHHHHHHHHhc----CCCCCCHHHHHHHHHHHhhcCCCCCCcceecc
Q 035594 91 NPTPEQLLALEEMYRR----GTRTPSAEQIQHIASQLRRFGKIEGKNVFYWF 138 (336)
Q Consensus 91 ~FT~EQLqiLEelF~~----g~~YPs~eqRqeIA~eL~~~G~LtEsqVqvWF 138 (336)
.++++++..|..+|.. +.++.+..+...+-..++. ++++..|..+|
T Consensus 13 ~l~~~~~~~l~~~F~~~D~d~~G~i~~~el~~~l~~~g~--~~~~~~~~~l~ 62 (90)
T 1avs_A 13 FLSEEMIAEFKAAFDMFDADGGGDISTKELGTVMRMLGQ--NPTKEELDAII 62 (90)
T ss_dssp HBCHHHHHHHHHHHHHHCTTCSSEECHHHHHHHHHHTTC--CCCHHHHHHHH
T ss_pred hCCHHHHHHHHHHHHHHCCCCCCcCcHHHHHHHHHHhCC--CCCHHHHHHHH
Confidence 4789999999999963 4557888877776666541 35555554433
No 125
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=21.92 E-value=92 Score=26.37 Aligned_cols=35 Identities=20% Similarity=0.027 Sum_probs=29.4
Q ss_pred CCCCHHHHHHHHHHHhcC-CCCCCHHHHHHHHHHHh
Q 035594 90 WNPTPEQLLALEEMYRRG-TRTPSAEQIQHIASQLR 124 (336)
Q Consensus 90 w~FT~EQLqiLEelF~~g-~~YPs~eqRqeIA~eL~ 124 (336)
...+++||++||+.|... ...|+.+.+-+.|-.|-
T Consensus 16 ~~~~~eeL~~l~~qy~~E~~~~vs~qt~F~yAw~Lv 51 (134)
T 3o48_A 16 EPLYPQQLEILRQQVVSEGGPTATIQSRFNYAWGLI 51 (134)
T ss_dssp CCCCHHHHHHHHHHHHHTTGGGSCHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHhCCCCChhhHHHHHHHHH
Confidence 457899999999999764 55899999999997774
No 126
>2rn7_A IS629 ORFA; helix, all alpha, unknown function, structural genomics, PSI-2, protein structure initiative; NMR {Shigella flexneri}
Probab=20.71 E-value=44 Score=25.00 Aligned_cols=46 Identities=15% Similarity=0.161 Sum_probs=30.6
Q ss_pred CCCCCHHHHHH-HHHHHhcCCCCCCH-HHHHHHHHHHhhcCCCCCCcceecc
Q 035594 89 RWNPTPEQLLA-LEEMYRRGTRTPSA-EQIQHIASQLRRFGKIEGKNVFYWF 138 (336)
Q Consensus 89 Rw~FT~EQLqi-LEelF~~g~~YPs~-eqRqeIA~eL~~~G~LtEsqVqvWF 138 (336)
|..||+++... ++.+...+..|++. ..+.+||..++ |+...|+.|-
T Consensus 4 ~~~ys~e~K~~~v~~~~~~~~~~~s~g~s~~~va~~~g----Is~~tl~~W~ 51 (108)
T 2rn7_A 4 NTRFSPEVRQRAVRMVLESQGEYDSQWATICSIAPKIG----CTPETLRVWV 51 (108)
T ss_dssp SCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHT----SCHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHhcccccccccccHHHHHHHHC----cCHHHHHHHH
Confidence 45789988754 44444443113332 45778999998 9988898884
No 127
>3u0k_A Rcamp; fluorescent protein, calcium binding, EF-hand, genetically E calcium indicator; HET: NFA CRK; 2.10A {Entacmaea quadricolor}
Probab=20.29 E-value=37 Score=33.79 Aligned_cols=46 Identities=17% Similarity=0.248 Sum_probs=33.1
Q ss_pred CCCCCCHHHHHHHHHHHhc----CCCCCCHHHHHHHHHHHhhcCCCCCCcce
Q 035594 88 SRWNPTPEQLLALEEMYRR----GTRTPSAEQIQHIASQLRRFGKIEGKNVF 135 (336)
Q Consensus 88 ~Rw~FT~EQLqiLEelF~~----g~~YPs~eqRqeIA~eL~~~G~LtEsqVq 135 (336)
.|-.+|++|+++|.++|.. +.++.+..+...+-..|+. .+++..|+
T Consensus 292 s~E~Lt~EEI~ELREaF~~fDkDgdG~IS~eELk~aLrsLG~--~~TeeEI~ 341 (440)
T 3u0k_A 292 TRDQLTEEQIAEFKEAFSLFDKDGDGTITTKELGTVMRSLGQ--NPTEAELQ 341 (440)
T ss_dssp BCBCCCHHHHHHHHHHHHHHCTTCSSEECHHHHHHHHHHTTC--CCCHHHHH
T ss_pred hHhhhhHHHHHHHHHHHHHHcCCCCCEECHHHHHHHHHHcCC--CCCHHHHH
Confidence 4567899999999999963 5567888877776666652 35555554
Done!