BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 035595
         (178 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|2CIQ|A Chain A, Structure-Based Functional Annotation: Yeast Ymr099c Codes
           For A D-Hexose-6-Phosphate Mutarotase
          Length = 297

 Score = 27.7 bits (60), Expect = 3.9,   Method: Compositional matrix adjust.
 Identities = 12/34 (35%), Positives = 21/34 (61%)

Query: 14  SKDFEWETLKQEIENDPSLQYHLLPYNSSPEAAQ 47
           +++  WE L Q  EN P++Q+ L P  ++PE  +
Sbjct: 85  ARNSTWEFLGQTKENPPTVQFGLKPEIANPELTK 118


>pdb|2CIR|A Chain A, Structure-Based Functional Annotation: Yeast Ymr099c Codes
           For A D-Hexose-6-Phosphate Mutarotase. Complex With
           Glucose-6-Phosphate
 pdb|2CIS|A Chain A, Structure-Based Functional Annotation: Yeast Ymr099c Codes
           For A D-Hexose-6-Phosphate Mutarotase. Complex With
           Tagatose-6-Phosphate
          Length = 297

 Score = 27.7 bits (60), Expect = 4.1,   Method: Compositional matrix adjust.
 Identities = 12/34 (35%), Positives = 21/34 (61%)

Query: 14  SKDFEWETLKQEIENDPSLQYHLLPYNSSPEAAQ 47
           +++  WE L Q  EN P++Q+ L P  ++PE  +
Sbjct: 85  ARNSTWEFLGQTKENPPTVQFGLKPEIANPELTK 118


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.313    0.129    0.377 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,750,240
Number of Sequences: 62578
Number of extensions: 233407
Number of successful extensions: 384
Number of sequences better than 100.0: 4
Number of HSP's better than 100.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 382
Number of HSP's gapped (non-prelim): 4
length of query: 178
length of database: 14,973,337
effective HSP length: 92
effective length of query: 86
effective length of database: 9,216,161
effective search space: 792589846
effective search space used: 792589846
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 48 (23.1 bits)