BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 035595
         (178 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|Q9W7J1|SE3AA_DANRE Semaphorin-3aa OS=Danio rerio GN=sema3aa PE=2 SV=1
          Length = 860

 Score = 30.4 bits (67), Expect = 5.7,   Method: Composition-based stats.
 Identities = 18/70 (25%), Positives = 31/70 (44%), Gaps = 9/70 (12%)

Query: 111 VDGEYYNNGH---------ENFSFLVDGEYYSNCPAVSGSQNYVILANLKSYRRVMFDSP 161
           +D  Y+ NG          ++ S L+DGE YS   A    +++ I   L S+  +  +  
Sbjct: 158 LDANYFENGRGKSPYDPKMQSSSLLLDGELYSGTSADFMGRDFAIFRTLGSHHPIRTEQH 217

Query: 162 DTEEKNKPHL 171
           D+   N+P  
Sbjct: 218 DSRWLNEPRF 227


>sp|P57164|PRIM_BUCAI DNA primase OS=Buchnera aphidicola subsp. Acyrthosiphon pisum
           (strain APS) GN=dnaG PE=3 SV=1
          Length = 577

 Score = 30.0 bits (66), Expect = 7.3,   Method: Composition-based stats.
 Identities = 23/80 (28%), Positives = 37/80 (46%), Gaps = 4/80 (5%)

Query: 10  GEYHSKDFEWETLKQE---IENDPSLQYHLLPYNSSPEAAQEAEKDSDAWKRFHSRHSSG 66
           G+   K+  W+TLK+    I +  +L++ LLP    P+     E      KR  +  +  
Sbjct: 306 GDDAGKNAAWKTLKKALPYISDKKTLKFILLPNQEDPDTIIRKEGREKFQKRIDNAITMS 365

Query: 67  KFFKFTAELSNCHEAALDAK 86
           KFF F   L N + ++ D K
Sbjct: 366 KFF-FKNILKNINLSSDDDK 384


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.313    0.129    0.377 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 69,721,751
Number of Sequences: 539616
Number of extensions: 2826162
Number of successful extensions: 4532
Number of sequences better than 100.0: 6
Number of HSP's better than 100.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 4532
Number of HSP's gapped (non-prelim): 6
length of query: 178
length of database: 191,569,459
effective HSP length: 110
effective length of query: 68
effective length of database: 132,211,699
effective search space: 8990395532
effective search space used: 8990395532
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 57 (26.6 bits)