Query 035595
Match_columns 178
No_of_seqs 162 out of 242
Neff 3.5
Searched_HMMs 46136
Date Fri Mar 29 04:22:08 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/035595.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/035595hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2361 Predicted methyltransf 99.8 1.1E-19 2.3E-24 158.0 4.5 97 51-148 34-151 (264)
2 PF12847 Methyltransf_18: Meth 98.6 1.4E-07 3.1E-12 67.2 5.9 68 80-149 1-78 (112)
3 PF08242 Methyltransf_12: Meth 98.4 3.1E-07 6.8E-12 65.0 4.3 68 85-152 1-77 (99)
4 PF13847 Methyltransf_31: Meth 98.4 8.6E-07 1.9E-11 67.7 6.3 69 80-149 3-81 (152)
5 PRK12335 tellurite resistance 98.3 1.6E-07 3.5E-12 79.8 1.2 94 50-149 82-192 (287)
6 TIGR02469 CbiT precorrin-6Y C5 98.3 2.7E-06 5.8E-11 60.8 6.1 69 80-149 19-96 (124)
7 smart00138 MeTrc Methyltransfe 98.2 2.9E-06 6.4E-11 72.2 7.0 95 53-150 56-212 (264)
8 PRK11207 tellurite resistance 98.2 2.5E-06 5.3E-11 69.0 5.8 75 71-149 18-103 (197)
9 PLN02233 ubiquinone biosynthes 98.2 3.9E-06 8.4E-11 71.0 7.1 71 77-149 70-153 (261)
10 PRK00121 trmB tRNA (guanine-N( 98.2 1.5E-06 3.2E-11 70.7 4.3 69 80-148 40-118 (202)
11 PRK11036 putative S-adenosyl-L 98.2 1.5E-06 3.4E-11 72.1 4.4 69 80-150 44-121 (255)
12 PF08241 Methyltransf_11: Meth 98.1 5.9E-06 1.3E-10 55.9 5.5 66 85-152 1-71 (95)
13 TIGR02752 MenG_heptapren 2-hep 98.1 8.8E-06 1.9E-10 65.6 6.5 68 79-148 44-121 (231)
14 PRK00107 gidB 16S rRNA methylt 98.1 6.5E-06 1.4E-10 67.5 5.6 66 81-149 46-120 (187)
15 TIGR02021 BchM-ChlM magnesium 98.1 6.8E-06 1.5E-10 66.4 5.5 65 79-149 54-127 (219)
16 TIGR00477 tehB tellurite resis 98.1 4.4E-06 9.5E-11 67.5 4.2 64 80-148 30-101 (195)
17 TIGR00138 gidB 16S rRNA methyl 98.1 6.4E-06 1.4E-10 66.6 5.2 66 81-149 43-117 (181)
18 PLN02244 tocopherol O-methyltr 98.1 1.2E-05 2.6E-10 70.5 7.1 68 79-148 117-193 (340)
19 TIGR00080 pimt protein-L-isoas 98.0 1.3E-05 2.9E-10 65.1 6.5 70 77-148 74-153 (215)
20 PF01209 Ubie_methyltran: ubiE 98.0 8.4E-06 1.8E-10 68.8 4.9 70 77-148 44-123 (233)
21 TIGR00091 tRNA (guanine-N(7)-) 98.0 5.6E-06 1.2E-10 66.6 3.6 65 82-147 18-93 (194)
22 PRK07580 Mg-protoporphyrin IX 98.0 1.4E-05 3E-10 63.9 5.5 65 79-149 62-135 (230)
23 COG2226 UbiE Methylase involve 98.0 1.8E-05 3.9E-10 68.2 6.3 66 79-147 50-125 (238)
24 PRK00312 pcm protein-L-isoaspa 97.9 2.9E-05 6.3E-10 62.6 6.7 69 78-149 76-152 (212)
25 PRK14103 trans-aconitate 2-met 97.9 1.6E-05 3.5E-10 65.9 5.0 68 79-149 28-97 (255)
26 TIGR03587 Pse_Me-ase pseudamin 97.9 1.7E-05 3.6E-10 65.3 4.9 68 79-149 42-113 (204)
27 PRK08287 cobalt-precorrin-6Y C 97.9 2.7E-05 5.9E-10 61.6 5.9 67 79-149 30-105 (187)
28 PF13649 Methyltransf_25: Meth 97.9 8.4E-06 1.8E-10 58.3 2.6 64 84-150 1-76 (101)
29 PRK13942 protein-L-isoaspartat 97.9 3.9E-05 8.4E-10 63.0 6.4 69 79-149 75-153 (212)
30 PRK03522 rumB 23S rRNA methylu 97.8 1.5E-05 3.3E-10 69.0 4.0 66 80-147 173-246 (315)
31 PRK11088 rrmA 23S rRNA methylt 97.8 3E-05 6.6E-10 65.3 5.6 67 80-148 85-158 (272)
32 PF13489 Methyltransf_23: Meth 97.8 9E-06 1.9E-10 60.4 1.8 66 79-149 21-86 (161)
33 PRK15451 tRNA cmo(5)U34 methyl 97.8 3.3E-05 7.1E-10 64.4 5.3 64 80-147 56-131 (247)
34 PRK01683 trans-aconitate 2-met 97.8 3.9E-05 8.6E-10 63.1 5.7 67 79-148 30-100 (258)
35 PRK14121 tRNA (guanine-N(7)-)- 97.8 2.6E-05 5.6E-10 71.5 4.9 67 80-147 122-198 (390)
36 PRK13944 protein-L-isoaspartat 97.8 5.7E-05 1.2E-09 61.4 6.4 70 78-149 70-150 (205)
37 PRK00274 ksgA 16S ribosomal RN 97.8 4E-05 8.6E-10 65.2 5.7 67 79-150 41-113 (272)
38 PRK08317 hypothetical protein; 97.8 7.3E-05 1.6E-09 58.6 6.7 72 77-150 16-96 (241)
39 PRK05785 hypothetical protein; 97.8 2.2E-05 4.8E-10 65.3 3.9 67 80-148 51-117 (226)
40 PRK07402 precorrin-6B methylas 97.8 5E-05 1.1E-09 60.7 5.5 52 79-130 39-99 (196)
41 PRK06202 hypothetical protein; 97.7 7.3E-05 1.6E-09 61.1 6.2 68 79-148 59-136 (232)
42 TIGR01983 UbiG ubiquinone bios 97.7 4.7E-05 1E-09 60.8 4.9 68 80-149 45-120 (224)
43 PF02390 Methyltransf_4: Putat 97.7 2.4E-05 5.3E-10 64.3 3.3 64 83-146 20-93 (195)
44 smart00650 rADc Ribosomal RNA 97.7 7.3E-05 1.6E-09 58.6 5.8 52 79-131 12-69 (169)
45 PF05175 MTS: Methyltransferas 97.7 9.1E-05 2E-09 58.5 6.3 65 80-147 31-104 (170)
46 PRK13168 rumA 23S rRNA m(5)U19 97.7 4.2E-05 9.1E-10 69.2 5.0 68 79-147 296-373 (443)
47 TIGR02081 metW methionine bios 97.7 4.2E-05 9.2E-10 61.0 4.4 70 80-149 13-83 (194)
48 PRK04266 fibrillarin; Provisio 97.7 6.6E-05 1.4E-09 63.2 5.8 69 79-147 71-147 (226)
49 PRK14968 putative methyltransf 97.7 8.3E-05 1.8E-09 57.2 5.7 64 80-147 23-96 (188)
50 PRK11873 arsM arsenite S-adeno 97.7 9.7E-05 2.1E-09 61.5 6.4 67 79-148 76-153 (272)
51 TIGR00438 rrmJ cell division p 97.7 0.00011 2.3E-09 58.4 6.3 65 79-147 31-104 (188)
52 PRK00216 ubiE ubiquinone/menaq 97.7 0.00015 3.3E-09 57.5 6.9 68 79-148 50-128 (239)
53 PRK00377 cbiT cobalt-precorrin 97.7 8.6E-05 1.9E-09 59.7 5.4 68 79-147 39-117 (198)
54 cd02440 AdoMet_MTases S-adenos 97.6 9E-05 1.9E-09 48.6 4.5 67 83-150 1-75 (107)
55 TIGR00479 rumA 23S rRNA (uraci 97.6 4.1E-05 8.9E-10 68.5 3.5 67 79-147 291-368 (431)
56 PRK10258 biotin biosynthesis p 97.6 8.5E-05 1.8E-09 61.1 4.8 65 80-147 42-109 (251)
57 PRK14896 ksgA 16S ribosomal RN 97.6 0.00013 2.9E-09 61.5 6.0 65 66-131 9-85 (258)
58 TIGR00755 ksgA dimethyladenosi 97.6 0.00012 2.7E-09 61.1 5.6 69 79-151 28-103 (253)
59 PTZ00338 dimethyladenosine tra 97.6 9.4E-05 2E-09 64.7 5.0 65 66-131 16-95 (294)
60 TIGR03534 RF_mod_PrmC protein- 97.6 0.00012 2.7E-09 59.0 5.3 64 81-147 88-160 (251)
61 PRK15068 tRNA mo(5)U34 methylt 97.6 0.00012 2.6E-09 64.2 5.5 67 80-149 122-197 (322)
62 PLN02396 hexaprenyldihydroxybe 97.6 9.2E-05 2E-09 65.7 4.6 67 80-149 131-206 (322)
63 PRK11188 rrmJ 23S rRNA methylt 97.5 0.00018 4E-09 59.3 6.0 65 79-147 50-123 (209)
64 TIGR02072 BioC biotin biosynth 97.5 0.00016 3.4E-09 57.1 5.3 67 81-149 35-106 (240)
65 PLN02336 phosphoethanolamine N 97.5 0.00017 3.6E-09 64.9 6.1 69 80-149 37-111 (475)
66 PTZ00098 phosphoethanolamine N 97.5 0.0002 4.3E-09 60.7 6.1 69 79-149 51-125 (263)
67 smart00828 PKS_MT Methyltransf 97.5 0.00016 3.5E-09 58.0 5.3 65 82-149 1-75 (224)
68 TIGR00537 hemK_rel_arch HemK-r 97.5 0.00018 3.9E-09 56.6 5.4 62 80-147 19-88 (179)
69 TIGR02085 meth_trns_rumB 23S r 97.5 8.9E-05 1.9E-09 66.1 4.0 51 80-131 233-291 (374)
70 PRK14902 16S rRNA methyltransf 97.5 0.00019 4.1E-09 64.9 6.1 69 78-147 248-326 (444)
71 PLN02585 magnesium protoporphy 97.5 0.00016 3.5E-09 64.0 5.5 63 80-148 144-219 (315)
72 PRK06922 hypothetical protein; 97.5 0.0001 2.2E-09 71.9 4.5 93 54-148 378-494 (677)
73 PRK13255 thiopurine S-methyltr 97.5 0.00015 3.2E-09 60.6 4.7 61 52-114 2-70 (218)
74 PRK13943 protein-L-isoaspartat 97.5 0.00022 4.8E-09 63.3 6.0 67 79-147 79-155 (322)
75 PF13659 Methyltransf_26: Meth 97.5 0.00011 2.4E-09 52.7 3.3 49 82-130 2-59 (117)
76 TIGR01934 MenG_MenH_UbiE ubiqu 97.5 0.00034 7.4E-09 54.9 6.3 68 79-148 38-113 (223)
77 PLN02336 phosphoethanolamine N 97.5 0.0003 6.5E-09 63.3 6.6 67 79-148 265-339 (475)
78 PRK05134 bifunctional 3-demeth 97.4 0.00018 3.9E-09 58.2 4.5 68 79-149 47-122 (233)
79 PF07021 MetW: Methionine bios 97.4 9.6E-05 2.1E-09 62.5 2.7 71 79-149 12-83 (193)
80 PF05401 NodS: Nodulation prot 97.4 0.00023 5.1E-09 60.6 4.8 68 79-150 42-115 (201)
81 TIGR00740 methyltransferase, p 97.4 0.00041 8.8E-09 56.9 5.8 52 80-131 53-116 (239)
82 PRK09328 N5-glutamine S-adenos 97.4 0.00041 8.8E-09 57.2 5.7 66 79-147 107-181 (275)
83 TIGR03840 TMPT_Se_Te thiopurin 97.3 0.00041 8.9E-09 57.8 5.7 58 55-114 2-67 (213)
84 TIGR03533 L3_gln_methyl protei 97.3 0.00037 8E-09 60.0 5.5 65 80-147 121-195 (284)
85 COG2230 Cfa Cyclopropane fatty 97.3 0.00024 5.1E-09 63.0 4.3 51 79-129 71-130 (283)
86 TIGR00536 hemK_fam HemK family 97.3 0.00037 8E-09 59.5 5.3 49 82-130 116-174 (284)
87 PTZ00146 fibrillarin; Provisio 97.3 0.00047 1E-08 61.3 5.9 95 53-149 107-210 (293)
88 COG2890 HemK Methylase of poly 97.3 0.00026 5.6E-09 61.4 4.1 59 83-141 113-190 (280)
89 PF02353 CMAS: Mycolic acid cy 97.3 0.00066 1.4E-08 58.8 6.2 66 78-148 60-134 (273)
90 COG2227 UbiG 2-polyprenyl-3-me 97.2 0.00018 3.8E-09 62.9 2.5 32 80-112 59-90 (243)
91 PLN02490 MPBQ/MSBQ methyltrans 97.2 0.00047 1E-08 61.9 5.2 68 80-149 113-186 (340)
92 COG2242 CobL Precorrin-6B meth 97.2 0.00072 1.6E-08 57.1 5.8 67 79-147 33-108 (187)
93 TIGR01177 conserved hypothetic 97.2 0.00066 1.4E-08 59.1 5.5 66 79-147 181-254 (329)
94 PRK11805 N5-glutamine S-adenos 97.2 0.00059 1.3E-08 59.7 5.1 63 82-147 135-207 (307)
95 COG2518 Pcm Protein-L-isoaspar 97.2 0.00067 1.5E-08 58.0 5.1 59 74-133 66-132 (209)
96 KOG3010 Methyltransferase [Gen 97.2 0.0007 1.5E-08 59.8 5.4 66 82-148 35-107 (261)
97 TIGR03704 PrmC_rel_meth putati 97.2 0.00031 6.7E-09 59.5 3.1 66 81-146 87-158 (251)
98 PRK10909 rsmD 16S rRNA m(2)G96 97.2 0.00041 9E-09 57.6 3.7 51 80-130 53-111 (199)
99 KOG1271 Methyltransferases [Ge 97.1 0.0008 1.7E-08 58.2 5.3 78 51-130 16-127 (227)
100 PRK14904 16S rRNA methyltransf 97.1 0.001 2.2E-08 60.4 6.2 68 77-147 247-324 (445)
101 TIGR03438 probable methyltrans 97.1 0.00048 1E-08 59.5 3.9 58 52-112 27-97 (301)
102 PRK14967 putative methyltransf 97.1 0.00068 1.5E-08 55.5 4.6 63 80-147 36-107 (223)
103 TIGR00406 prmA ribosomal prote 97.1 0.00093 2E-08 57.4 5.5 64 80-147 159-231 (288)
104 PRK14903 16S rRNA methyltransf 97.1 0.00079 1.7E-08 61.4 5.3 72 75-147 232-313 (431)
105 PRK11705 cyclopropane fatty ac 97.1 0.00098 2.1E-08 60.1 5.8 64 79-148 166-235 (383)
106 COG2263 Predicted RNA methylas 97.0 0.00099 2.1E-08 56.9 5.1 52 80-131 45-103 (198)
107 PRK15001 SAM-dependent 23S rib 97.0 0.0013 2.9E-08 59.9 5.8 63 81-147 229-304 (378)
108 TIGR02716 C20_methyl_CrtF C-20 97.0 0.0024 5.3E-08 54.5 7.0 68 78-149 147-223 (306)
109 TIGR02143 trmA_only tRNA (urac 96.9 0.0008 1.7E-08 59.8 3.8 49 82-131 199-255 (353)
110 PRK01544 bifunctional N5-gluta 96.9 0.0013 2.7E-08 61.5 5.0 50 81-130 139-198 (506)
111 TIGR00452 methyltransferase, p 96.9 0.0016 3.5E-08 57.7 5.3 67 80-149 121-196 (314)
112 PRK00517 prmA ribosomal protei 96.9 0.0011 2.5E-08 55.4 4.1 33 80-112 119-151 (250)
113 COG0220 Predicted S-adenosylme 96.9 0.0013 2.8E-08 56.2 4.4 50 82-131 50-108 (227)
114 PRK14901 16S rRNA methyltransf 96.9 0.002 4.3E-08 58.4 5.9 70 77-147 249-331 (434)
115 PRK05031 tRNA (uracil-5-)-meth 96.9 0.00095 2.1E-08 59.4 3.7 49 82-131 208-264 (362)
116 PHA03411 putative methyltransf 96.8 0.0016 3.5E-08 57.7 4.6 80 65-147 45-132 (279)
117 PRK10901 16S rRNA methyltransf 96.8 0.0028 6.1E-08 57.3 6.1 70 75-146 239-318 (427)
118 PF05958 tRNA_U5-meth_tr: tRNA 96.8 0.00037 8.1E-09 61.9 0.4 47 83-130 199-253 (352)
119 TIGR00446 nop2p NOL1/NOP2/sun 96.8 0.0021 4.6E-08 54.5 4.8 55 76-130 67-131 (264)
120 COG0030 KsgA Dimethyladenosine 96.8 0.0031 6.8E-08 55.3 6.0 64 66-130 10-85 (259)
121 KOG3191 Predicted N6-DNA-methy 96.7 0.0012 2.5E-08 56.8 2.9 62 81-146 44-115 (209)
122 PF06325 PrmA: Ribosomal prote 96.7 0.003 6.5E-08 55.8 5.4 64 81-150 162-233 (295)
123 PRK14966 unknown domain/N5-glu 96.7 0.0029 6.4E-08 58.9 5.6 50 80-130 251-309 (423)
124 PRK09489 rsmC 16S ribosomal RN 96.6 0.0037 7.9E-08 55.8 5.6 62 81-147 197-267 (342)
125 PLN02781 Probable caffeoyl-CoA 96.6 0.0014 3.1E-08 55.0 2.4 53 79-131 67-130 (234)
126 KOG4300 Predicted methyltransf 96.6 0.0018 3.8E-08 56.9 3.0 65 79-146 75-150 (252)
127 PF01135 PCMT: Protein-L-isoas 96.5 0.0035 7.5E-08 52.6 4.4 59 76-134 68-136 (209)
128 PRK04457 spermidine synthase; 96.5 0.0037 8.1E-08 53.4 4.6 67 80-147 66-142 (262)
129 PF10294 Methyltransf_16: Puta 96.3 0.0033 7.1E-08 50.4 3.2 33 80-112 45-78 (173)
130 PRK11783 rlmL 23S rRNA m(2)G24 96.3 0.0028 6E-08 61.2 3.2 94 52-147 507-614 (702)
131 PRK15128 23S rRNA m(5)C1962 me 96.3 0.0021 4.5E-08 58.6 2.1 51 80-130 220-280 (396)
132 COG1352 CheR Methylase of chem 96.3 0.015 3.2E-07 51.1 7.3 59 53-112 54-138 (268)
133 COG2265 TrmA SAM-dependent met 96.3 0.0025 5.4E-08 59.0 2.4 65 66-131 268-351 (432)
134 TIGR00478 tly hemolysin TlyA f 96.2 0.0039 8.4E-08 53.1 3.2 33 80-112 75-107 (228)
135 PRK13256 thiopurine S-methyltr 96.2 0.019 4.1E-07 49.1 7.2 60 51-112 7-74 (226)
136 COG4123 Predicted O-methyltran 96.2 0.0027 5.8E-08 55.4 2.0 66 80-146 44-120 (248)
137 PRK01544 bifunctional N5-gluta 96.1 0.0046 1E-07 57.7 3.4 50 81-130 348-406 (506)
138 PHA03412 putative methyltransf 96.1 0.0065 1.4E-07 53.0 4.0 63 81-146 50-119 (241)
139 TIGR00563 rsmB ribosomal RNA s 96.0 0.018 3.8E-07 52.1 6.2 36 77-112 235-271 (426)
140 COG2264 PrmA Ribosomal protein 95.9 0.0081 1.7E-07 53.8 3.8 33 80-112 162-194 (300)
141 PF03848 TehB: Tellurite resis 95.9 0.018 3.8E-07 48.3 5.4 63 79-146 29-99 (192)
142 PLN02672 methionine S-methyltr 95.8 0.011 2.3E-07 60.7 4.7 31 82-112 120-151 (1082)
143 PF06080 DUF938: Protein of un 95.7 0.0097 2.1E-07 50.7 3.4 69 83-151 28-112 (204)
144 PF05724 TPMT: Thiopurine S-me 95.7 0.018 4E-07 48.4 4.9 58 53-112 3-68 (218)
145 COG2813 RsmC 16S RNA G1207 met 95.6 0.049 1.1E-06 49.0 7.6 43 81-123 159-210 (300)
146 KOG2187 tRNA uracil-5-methyltr 95.6 0.014 2.9E-07 56.2 4.3 75 74-149 377-462 (534)
147 PRK04148 hypothetical protein; 95.6 0.01 2.2E-07 47.6 2.7 49 81-130 17-67 (134)
148 KOG1499 Protein arginine N-met 95.5 0.019 4.1E-07 52.6 4.6 63 81-146 61-132 (346)
149 PLN03075 nicotianamine synthas 95.5 0.036 7.8E-07 49.4 6.2 68 80-149 123-203 (296)
150 TIGR01444 fkbM_fam methyltrans 95.5 0.018 3.9E-07 42.9 3.6 47 83-129 1-56 (143)
151 PF01739 CheR: CheR methyltran 95.3 0.041 9E-07 45.8 5.7 76 73-150 21-145 (196)
152 COG4976 Predicted methyltransf 95.2 0.0078 1.7E-07 53.7 1.1 95 9-112 35-156 (287)
153 PRK11727 23S rRNA mA1618 methy 95.2 0.008 1.7E-07 53.8 1.1 32 80-112 114-147 (321)
154 PLN02476 O-methyltransferase 95.1 0.016 3.4E-07 51.1 2.7 56 79-134 117-183 (278)
155 PRK00811 spermidine synthase; 95.1 0.019 4.1E-07 49.5 3.0 37 76-112 72-109 (283)
156 TIGR00095 RNA methyltransferas 95.0 0.0091 2E-07 48.7 0.9 51 80-130 49-108 (189)
157 PRK00050 16S rRNA m(4)C1402 me 95.0 0.021 4.6E-07 50.7 3.2 51 79-131 18-78 (296)
158 KOG0820 Ribosomal RNA adenine 94.9 0.028 6E-07 51.0 3.7 33 79-112 57-89 (315)
159 KOG2904 Predicted methyltransf 94.9 0.042 9.1E-07 50.0 4.8 32 81-112 149-181 (328)
160 PF00398 RrnaAD: Ribosomal RNA 94.7 0.063 1.4E-06 45.5 5.2 72 79-151 29-106 (262)
161 TIGR00417 speE spermidine synt 94.6 0.031 6.6E-07 47.6 3.1 35 78-112 70-105 (270)
162 PRK03612 spermidine synthase; 94.5 0.022 4.8E-07 53.3 2.2 40 73-112 290-330 (521)
163 KOG1270 Methyltransferases [Co 94.4 0.021 4.6E-07 51.1 1.7 30 82-112 91-120 (282)
164 PRK04338 N(2),N(2)-dimethylgua 94.4 0.038 8.3E-07 50.2 3.4 50 81-130 58-116 (382)
165 KOG1540 Ubiquinone biosynthesi 94.2 0.15 3.2E-06 46.0 6.6 66 79-147 99-183 (296)
166 KOG1541 Predicted protein carb 94.0 0.024 5.2E-07 50.3 1.2 98 74-177 42-145 (270)
167 PF00891 Methyltransf_2: O-met 93.9 0.2 4.3E-06 41.1 6.4 63 80-149 100-166 (241)
168 PF08704 GCD14: tRNA methyltra 93.9 0.15 3.3E-06 44.1 6.0 71 77-147 37-119 (247)
169 PRK01581 speE spermidine synth 93.9 0.041 8.8E-07 50.8 2.5 37 76-112 146-183 (374)
170 PRK10611 chemotaxis methyltran 93.9 0.17 3.8E-06 44.6 6.3 59 53-112 79-156 (287)
171 PF08003 Methyltransf_9: Prote 93.8 0.096 2.1E-06 47.6 4.8 66 80-149 115-190 (315)
172 PF01728 FtsJ: FtsJ-like methy 93.4 0.11 2.5E-06 40.7 4.0 54 53-113 3-58 (181)
173 PF13679 Methyltransf_32: Meth 93.3 0.082 1.8E-06 40.7 3.0 34 79-112 24-62 (141)
174 COG4106 Tam Trans-aconitate me 92.8 0.079 1.7E-06 46.9 2.4 56 74-130 21-84 (257)
175 PF01596 Methyltransf_3: O-met 92.4 0.068 1.5E-06 44.7 1.5 73 79-151 44-131 (205)
176 PLN02366 spermidine synthase 91.5 0.19 4.1E-06 44.6 3.3 70 77-147 88-171 (308)
177 COG0500 SmtA SAM-dependent met 91.1 0.23 5E-06 31.9 2.6 28 84-112 52-81 (257)
178 PF05185 PRMT5: PRMT5 arginine 90.9 0.43 9.3E-06 44.5 5.2 63 80-146 186-263 (448)
179 PF02475 Met_10: Met-10+ like- 90.0 0.5 1.1E-05 39.7 4.4 66 79-147 100-175 (200)
180 PF02384 N6_Mtase: N-6 DNA Met 89.8 0.25 5.4E-06 42.0 2.5 48 65-112 25-86 (311)
181 COG2519 GCD14 tRNA(1-methylade 89.4 0.84 1.8E-05 40.5 5.5 89 55-147 66-169 (256)
182 KOG2940 Predicted methyltransf 89.1 0.38 8.1E-06 43.5 3.1 62 81-146 73-142 (325)
183 PF05971 Methyltransf_10: Prot 89.0 0.13 2.9E-06 46.0 0.3 31 81-112 103-135 (299)
184 KOG3420 Predicted RNA methylas 88.0 0.3 6.6E-06 41.3 1.8 67 79-147 47-120 (185)
185 PF09243 Rsm22: Mitochondrial 87.7 0.74 1.6E-05 39.7 4.0 32 81-112 34-67 (274)
186 PRK11760 putative 23S rRNA C24 87.7 1.6 3.5E-05 40.4 6.3 66 79-147 210-276 (357)
187 TIGR02987 met_A_Alw26 type II 87.5 0.42 9E-06 44.3 2.5 33 80-112 31-72 (524)
188 KOG2899 Predicted methyltransf 87.5 0.4 8.6E-06 43.2 2.3 69 80-149 58-129 (288)
189 PF03291 Pox_MCEL: mRNA cappin 87.3 0.58 1.3E-05 42.0 3.2 33 80-112 62-94 (331)
190 TIGR03439 methyl_EasF probable 86.7 0.85 1.8E-05 40.9 3.9 40 73-112 68-113 (319)
191 PF01170 UPF0020: Putative RNA 85.7 1.2 2.6E-05 36.0 4.1 66 79-146 27-111 (179)
192 PF09445 Methyltransf_15: RNA 85.4 1.1 2.4E-05 36.9 3.6 48 83-131 2-58 (163)
193 PF03141 Methyltransf_29: Puta 85.1 0.54 1.2E-05 45.3 2.0 23 80-102 117-139 (506)
194 PF08123 DOT1: Histone methyla 85.1 0.82 1.8E-05 38.4 2.9 33 78-110 40-73 (205)
195 PRK11933 yebU rRNA (cytosine-C 85.1 1.6 3.5E-05 41.1 5.1 77 77-165 110-196 (470)
196 PLN02589 caffeoyl-CoA O-methyl 85.0 0.27 5.9E-06 42.4 -0.0 53 79-131 78-141 (247)
197 PF04816 DUF633: Family of unk 84.7 1.3 2.8E-05 37.3 3.9 64 84-150 1-75 (205)
198 PF12147 Methyltransf_20: Puta 84.5 2 4.4E-05 39.2 5.3 72 79-150 134-218 (311)
199 PF05219 DREV: DREV methyltran 83.2 1.1 2.3E-05 40.0 2.9 63 80-150 94-160 (265)
200 KOG1500 Protein arginine N-met 82.6 1.7 3.7E-05 41.3 4.1 34 80-113 177-210 (517)
201 KOG3115 Methyltransferase-like 82.5 1.7 3.6E-05 38.5 3.8 51 81-131 61-127 (249)
202 TIGR00308 TRM1 tRNA(guanine-26 80.8 1.1 2.3E-05 41.0 2.0 49 82-130 46-104 (374)
203 COG3897 Predicted methyltransf 80.7 3.2 7E-05 36.3 4.8 76 66-150 68-151 (218)
204 COG4122 Predicted O-methyltran 80.5 0.64 1.4E-05 40.0 0.5 71 78-148 57-139 (219)
205 PF07091 FmrO: Ribosomal RNA m 79.1 1.8 3.9E-05 38.3 2.9 37 78-114 103-140 (251)
206 PF07757 AdoMet_MTase: Predict 78.9 1.6 3.5E-05 34.6 2.3 33 81-114 59-91 (112)
207 PLN02823 spermine synthase 78.6 1.9 4.1E-05 38.9 3.0 40 73-112 96-136 (336)
208 PRK11783 rlmL 23S rRNA m(2)G24 77.9 4.2 9E-05 39.7 5.2 20 80-99 190-209 (702)
209 PF05148 Methyltransf_8: Hypot 76.7 4.3 9.2E-05 35.5 4.4 89 48-147 33-128 (219)
210 PF07101 DUF1363: Protein of u 75.2 1.1 2.3E-05 35.7 0.3 18 85-102 7-24 (124)
211 PLN02668 indole-3-acetate carb 73.8 2.5 5.4E-05 39.2 2.4 21 81-101 64-84 (386)
212 PF02636 Methyltransf_28: Puta 72.4 3.1 6.8E-05 34.9 2.5 22 81-102 19-40 (252)
213 PF05206 TRM13: Methyltransfer 70.6 14 0.00029 32.4 6.1 33 80-112 18-56 (259)
214 PF01555 N6_N4_Mtase: DNA meth 64.3 5.7 0.00012 30.8 2.3 37 79-116 190-226 (231)
215 PF02527 GidB: rRNA small subu 63.3 13 0.00028 30.8 4.3 69 83-154 51-128 (184)
216 KOG2920 Predicted methyltransf 62.8 6 0.00013 35.7 2.4 33 81-113 117-149 (282)
217 PF03602 Cons_hypoth95: Conser 61.1 6.7 0.00015 32.1 2.3 33 80-112 42-74 (183)
218 COG1255 Uncharacterized protei 60.6 15 0.00032 30.0 4.0 48 80-130 13-60 (129)
219 KOG1975 mRNA cap methyltransfe 58.5 6.5 0.00014 36.9 2.0 33 80-112 117-149 (389)
220 PF03686 UPF0146: Uncharacteri 58.2 13 0.00028 30.0 3.3 48 80-130 13-60 (127)
221 KOG2352 Predicted spermine/spe 53.2 21 0.00046 34.5 4.4 94 52-150 12-123 (482)
222 PRK00536 speE spermidine synth 49.6 14 0.00031 32.4 2.6 39 73-112 65-103 (262)
223 KOG3987 Uncharacterized conser 49.5 6.2 0.00013 35.4 0.3 32 80-112 112-143 (288)
224 PF13578 Methyltransf_24: Meth 43.9 10 0.00023 27.0 0.7 64 85-149 1-77 (106)
225 PF03492 Methyltransf_7: SAM d 43.8 20 0.00044 32.1 2.7 24 79-102 15-38 (334)
226 COG4076 Predicted RNA methylas 43.3 40 0.00086 30.0 4.3 79 81-173 33-120 (252)
227 PF01564 Spermine_synth: Sperm 42.5 21 0.00046 30.4 2.5 36 77-112 73-109 (246)
228 COG0421 SpeE Spermidine syntha 40.2 33 0.00072 30.4 3.4 34 79-112 75-109 (282)
229 PHA01634 hypothetical protein 37.8 25 0.00054 29.4 2.1 36 80-115 28-63 (156)
230 COG1189 Predicted rRNA methyla 36.6 75 0.0016 28.3 5.0 33 80-112 79-111 (245)
231 PRK11524 putative methyltransf 36.1 30 0.00064 29.8 2.4 41 79-120 207-247 (284)
232 KOG3045 Predicted RNA methylas 35.4 45 0.00098 30.8 3.5 18 79-96 179-196 (325)
233 COG0031 CysK Cysteine synthase 34.9 33 0.00072 31.1 2.6 53 52-112 147-205 (300)
234 PF01234 NNMT_PNMT_TEMT: NNMT/ 34.6 27 0.00059 30.7 2.0 28 81-110 57-86 (256)
235 KOG2915 tRNA(1-methyladenosine 34.0 36 0.00077 31.4 2.7 34 77-110 102-137 (314)
236 COG2520 Predicted methyltransf 29.6 74 0.0016 29.3 4.0 71 80-152 188-267 (341)
237 PRK13699 putative methylase; P 28.9 49 0.0011 27.9 2.5 38 79-117 162-199 (227)
238 COG3963 Phospholipid N-methylt 28.2 42 0.00092 29.0 2.0 21 81-101 49-69 (194)
239 KOG1539 WD repeat protein [Gen 28.2 51 0.0011 34.2 2.9 68 79-151 211-287 (910)
240 COG1565 Uncharacterized conser 28.0 55 0.0012 30.7 2.9 23 80-102 77-99 (370)
241 cd00315 Cyt_C5_DNA_methylase C 27.9 68 0.0015 27.6 3.3 31 83-113 2-32 (275)
242 COG0144 Sun tRNA and rRNA cyto 27.9 1.2E+02 0.0026 27.4 5.0 82 74-165 150-242 (355)
243 PF04839 PSRP-3_Ycf65: Plastid 27.6 27 0.00058 24.2 0.6 18 15-33 10-27 (49)
244 KOG2793 Putative N2,N2-dimethy 27.6 53 0.0012 28.9 2.6 30 81-110 87-116 (248)
245 COG0357 GidB Predicted S-adeno 27.5 43 0.00093 28.8 2.0 50 81-130 68-126 (215)
246 KOG1481 Cysteine synthase [Ami 27.3 65 0.0014 30.2 3.2 44 52-103 191-235 (391)
247 PF12692 Methyltransf_17: S-ad 26.3 38 0.00082 28.5 1.4 30 81-111 29-60 (160)
248 COG1748 LYS9 Saccharopine dehy 26.2 33 0.00072 32.0 1.2 84 82-165 2-103 (389)
249 PF11968 DUF3321: Putative met 25.6 82 0.0018 27.6 3.3 60 80-147 51-110 (219)
250 KOG2730 Methylase [General fun 25.4 1E+02 0.0022 27.9 3.9 50 80-130 94-152 (263)
251 COG0116 Predicted N6-adenine-s 25.2 1.4E+02 0.003 28.1 5.0 65 80-146 191-304 (381)
252 PF03605 DcuA_DcuB: Anaerobic 24.9 31 0.00068 32.2 0.7 20 83-102 93-112 (364)
253 COG1041 Predicted DNA modifica 23.8 35 0.00075 31.7 0.8 43 79-122 196-238 (347)
254 KOG1663 O-methyltransferase [S 23.5 1.1E+02 0.0024 27.2 3.7 68 80-147 73-155 (237)
255 PRK01747 mnmC bifunctional tRN 23.2 66 0.0014 30.8 2.5 23 79-101 56-78 (662)
256 PF11899 DUF3419: Protein of u 21.6 88 0.0019 28.9 2.9 36 76-112 31-66 (380)
257 PF11220 DUF3015: Protein of u 20.5 26 0.00055 28.7 -0.7 11 87-97 9-19 (144)
No 1
>KOG2361 consensus Predicted methyltransferase [General function prediction only]
Probab=99.78 E-value=1.1e-19 Score=158.00 Aligned_cols=97 Identities=21% Similarity=0.188 Sum_probs=74.5
Q ss_pred cchHHHHHHHhhcCCCCccccc-------ccccccCCCc--eeEeeccCCchhHHHhHHhhh---hheeeeeccc-----
Q 035595 51 KDSDAWKRFHSRHSSGKFFKFT-------AELSNCHEAA--LDAKGNFGNGSLIADFSVVIK---MKILASLVDG----- 113 (178)
Q Consensus 51 ~~~~~Wd~Fy~rh~~~~FFKdR-------PEL~~~~~~~--~vLEvGCG~Gnta~pll~~~~---~~i~AtD~s~----- 113 (178)
+++++||.||++|. ++||||| |||..+.... +|||||||+|||++||++.++ ..++|.|.+.
T Consensus 34 ~~~k~wD~fy~~~~-~rFfkdR~wL~~Efpel~~~~~~~~~~ilEvGCGvGNtvfPll~~~~n~~l~v~acDfsp~Ai~~ 112 (264)
T KOG2361|consen 34 EASKYWDTFYKIHE-NRFFKDRNWLLREFPELLPVDEKSAETILEVGCGVGNTVFPLLKTSPNNRLKVYACDFSPRAIEL 112 (264)
T ss_pred chhhhhhhhhhhcc-ccccchhHHHHHhhHHhhCccccChhhheeeccCCCcccchhhhcCCCCCeEEEEcCCChHHHHH
Confidence 57899999999997 7999999 9999887554 899999999999999999753 5789999772
Q ss_pred ---ccccCCCcceEEEEcccccCCCCCC-CCCcceEeee
Q 035595 114 ---EYYNNGHENFSFLVDGEYYSNCPAV-SGSQNYVILA 148 (178)
Q Consensus 114 ---k~~~~g~~N~~F~~~~~~~s~~p~~-~~s~~~vil~ 148 (178)
......-..-.|+.+-...++...+ +||+|+++||
T Consensus 113 vk~~~~~~e~~~~afv~Dlt~~~~~~~~~~~svD~it~I 151 (264)
T KOG2361|consen 113 VKKSSGYDESRVEAFVWDLTSPSLKEPPEEGSVDIITLI 151 (264)
T ss_pred HHhccccchhhhcccceeccchhccCCCCcCccceEEEE
Confidence 2222223335666666654566666 8888888876
No 2
>PF12847 Methyltransf_18: Methyltransferase domain; PDB: 3G2Q_A 3G2O_A 3G2M_B 3G2P_B 3D2L_B 1IM8_B 3NJR_A 3E05_H 3EVZ_A 3HM2_A ....
Probab=98.57 E-value=1.4e-07 Score=67.15 Aligned_cols=68 Identities=10% Similarity=0.100 Sum_probs=50.8
Q ss_pred CCceeEeeccCCchhHHHhHHh-hhhheeeeecc--------ccc-ccCCCcceEEEEcccccCCCCCCCCCcceEeeee
Q 035595 80 EAALDAKGNFGNGSLIADFSVV-IKMKILASLVD--------GEY-YNNGHENFSFLVDGEYYSNCPAVSGSQNYVILAN 149 (178)
Q Consensus 80 ~~~~vLEvGCG~Gnta~pll~~-~~~~i~AtD~s--------~k~-~~~g~~N~~F~~~~~~~s~~p~~~~s~~~vil~n 149 (178)
|..+|||+|||+|..++.++.. ...+++|+|.+ ++. ......|++|..+.. ...+...+..|+|++.+
T Consensus 1 p~~~vLDlGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~--~~~~~~~~~~D~v~~~~ 78 (112)
T PF12847_consen 1 PGGRVLDLGCGTGRLSIALARLFPGARVVGVDISPEMLEIARERAAEEGLSDRITFVQGDA--EFDPDFLEPFDLVICSG 78 (112)
T ss_dssp TTCEEEEETTTTSHHHHHHHHHHTTSEEEEEESSHHHHHHHHHHHHHTTTTTTEEEEESCC--HGGTTTSSCEEEEEECS
T ss_pred CCCEEEEEcCcCCHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEECcc--ccCcccCCCCCEEEECC
Confidence 4578999999999999999993 44689999977 233 234457899999777 22334455599999887
No 3
>PF08242 Methyltransf_12: Methyltransferase domain; InterPro: IPR013217 Methyl transfer from the ubiquitous donor S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] Fatty acid synthase (2.3.1.85 from EC), a biosynthetic enzyme catalysing the formation of long-chain fatty acids Glycine N-methyltransferase (2.1.1.20 from EC) which catalyses the SAM-dependent methylation of glycine to form sarcosine and may play a role in regulating the methylation potential of the cell [] Enniatin synthetase, involved in non-ribosomal biosynthesis of cyclohexadepsipeptidase, enniatin [] Histamine N-methyltransferase (2.1.1.8 from EC), a SAM-dependent histamine-inactivating enzyme [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ].; PDB: 2VZ8_A 2VZ9_A.
Probab=98.42 E-value=3.1e-07 Score=64.99 Aligned_cols=68 Identities=15% Similarity=0.056 Sum_probs=36.4
Q ss_pred EeeccCCchhHHHhHHh-hhhheeeeecc--------cccccCCCcceEEEEcccccCCCCCCCCCcceEeeeehhh
Q 035595 85 AKGNFGNGSLIADFSVV-IKMKILASLVD--------GEYYNNGHENFSFLVDGEYYSNCPAVSGSQNYVILANLKS 152 (178)
Q Consensus 85 LEvGCG~Gnta~pll~~-~~~~i~AtD~s--------~k~~~~g~~N~~F~~~~~~~s~~p~~~~s~~~vil~nl~~ 152 (178)
||||||+|+...+|+.. ...+++++|++ ++....+..++.+.........-...+++.|+|++.|.=.
T Consensus 1 LdiGcG~G~~~~~l~~~~~~~~~~~~D~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~V~~~~vl~ 77 (99)
T PF08242_consen 1 LDIGCGTGRLLRALLEELPDARYTGVDISPSMLERARERLAELGNDNFERLRFDVLDLFDYDPPESFDLVVASNVLH 77 (99)
T ss_dssp -EESTTTS-TTTTHHHHC-EEEEEEEESSSSTTSTTCCCHHHCT---EEEEE--SSS---CCC----SEEEEE-TTS
T ss_pred CEeCccChHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhhcCCcceeEEEeecCChhhcccccccceehhhhhHh
Confidence 79999999999999998 23589999988 3334444444444443332111122237999999987543
No 4
>PF13847 Methyltransf_31: Methyltransferase domain; PDB: 3T0I_B 3SVZ_B 3SXJ_A 3F4K_A 3GU3_B 2GH1_A 1R8Y_E 1R8X_B 2B3T_A 1T43_A ....
Probab=98.38 E-value=8.6e-07 Score=67.71 Aligned_cols=69 Identities=13% Similarity=0.102 Sum_probs=52.9
Q ss_pred CCceeEeeccCCchhHHHhHHh--hhhheeeeecc--------cccccCCCcceEEEEcccccCCCCCCCCCcceEeeee
Q 035595 80 EAALDAKGNFGNGSLIADFSVV--IKMKILASLVD--------GEYYNNGHENFSFLVDGEYYSNCPAVSGSQNYVILAN 149 (178)
Q Consensus 80 ~~~~vLEvGCG~Gnta~pll~~--~~~~i~AtD~s--------~k~~~~g~~N~~F~~~~~~~s~~p~~~~s~~~vil~n 149 (178)
...+|||+|||+|..++.|+.. ...+++++|.+ .++...+..|+.|.++... .++..+++..|+|+..+
T Consensus 3 ~~~~iLDlGcG~G~~~~~l~~~~~~~~~i~gvD~s~~~i~~a~~~~~~~~~~ni~~~~~d~~-~l~~~~~~~~D~I~~~~ 81 (152)
T PF13847_consen 3 SNKKILDLGCGTGRLLIQLAKELNPGAKIIGVDISEEMIEYAKKRAKELGLDNIEFIQGDIE-DLPQELEEKFDIIISNG 81 (152)
T ss_dssp TTSEEEEET-TTSHHHHHHHHHSTTTSEEEEEESSHHHHHHHHHHHHHTTSTTEEEEESBTT-CGCGCSSTTEEEEEEES
T ss_pred CCCEEEEecCcCcHHHHHHHHhcCCCCEEEEEECcHHHHHHhhcccccccccccceEEeehh-ccccccCCCeeEEEEcC
Confidence 4679999999999999999953 24579999977 3445678889999998776 35433558999998874
No 5
>PRK12335 tellurite resistance protein TehB; Provisional
Probab=98.33 E-value=1.6e-07 Score=79.82 Aligned_cols=94 Identities=11% Similarity=0.075 Sum_probs=63.7
Q ss_pred ccchHHHHHHHhhcCCCCccccc------ccccc---cCCCceeEeeccCCchhHHHhHHhhhhheeeeeccc-------
Q 035595 50 EKDSDAWKRFHSRHSSGKFFKFT------AELSN---CHEAALDAKGNFGNGSLIADFSVVIKMKILASLVDG------- 113 (178)
Q Consensus 50 ~~~~~~Wd~Fy~rh~~~~FFKdR------PEL~~---~~~~~~vLEvGCG~Gnta~pll~~~~~~i~AtD~s~------- 113 (178)
+++...|..||.... ..|+|.+ +++.. ...+.+|||+|||+|..+++|+... .+++|+|.+.
T Consensus 82 s~d~~~~l~fy~~~~-~~f~~~~~~~~~~~~~~~~~~~~~~~~vLDlGcG~G~~~~~la~~g-~~V~avD~s~~ai~~~~ 159 (287)
T PRK12335 82 SDDLECQLSFYCKPE-DYFHKKYNLTATHSEVLEAVQTVKPGKALDLGCGQGRNSLYLALLG-FDVTAVDINQQSLENLQ 159 (287)
T ss_pred CCCcEEEEEEEEcch-hhHhhhhccccccHHHHHHhhccCCCCEEEeCCCCCHHHHHHHHCC-CEEEEEECCHHHHHHHH
Confidence 356778888996664 5666765 23221 1245699999999999999999865 5899999872
Q ss_pred -ccccCCCcceEEEEcccccCCCCCCCCCcceEeeee
Q 035595 114 -EYYNNGHENFSFLVDGEYYSNCPAVSGSQNYVILAN 149 (178)
Q Consensus 114 -k~~~~g~~N~~F~~~~~~~s~~p~~~~s~~~vil~n 149 (178)
++...++ ++.+...... . ..++++.|+|+...
T Consensus 160 ~~~~~~~l-~v~~~~~D~~-~--~~~~~~fD~I~~~~ 192 (287)
T PRK12335 160 EIAEKENL-NIRTGLYDIN-S--ASIQEEYDFILSTV 192 (287)
T ss_pred HHHHHcCC-ceEEEEechh-c--ccccCCccEEEEcc
Confidence 3344555 6777664433 1 22478899987653
No 6
>TIGR02469 CbiT precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit. This model recognizes the CbiT methylase which is responsible, in part (along with CbiE), for methylating precorrin-6y (or cobalt-precorrin-6y) at both the 5 and 15 positions as well as the concomitant decarbozylation at C-12. In many organisms, this protein is fused to the CbiE subunit. The fused protein, when found in organisms catalyzing the oxidative version of the cobalamin biosynthesis pathway, is called CobL.
Probab=98.26 E-value=2.7e-06 Score=60.85 Aligned_cols=69 Identities=10% Similarity=0.052 Sum_probs=48.9
Q ss_pred CCceeEeeccCCchhHHHhHHhh-hhheeeeeccc--------ccccCCCcceEEEEcccccCCCCCCCCCcceEeeee
Q 035595 80 EAALDAKGNFGNGSLIADFSVVI-KMKILASLVDG--------EYYNNGHENFSFLVDGEYYSNCPAVSGSQNYVILAN 149 (178)
Q Consensus 80 ~~~~vLEvGCG~Gnta~pll~~~-~~~i~AtD~s~--------k~~~~g~~N~~F~~~~~~~s~~p~~~~s~~~vil~n 149 (178)
+..+|||+|||+|..+..++... ..+++++|.+. .....+..++.|........ .+..+++.|+|++.+
T Consensus 19 ~~~~vldlG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~D~v~~~~ 96 (124)
T TIGR02469 19 PGDVLWDIGAGSGSITIEAARLVPNGRVYAIERNPEALRLIERNARRFGVSNIVIVEGDAPEA-LEDSLPEPDRVFIGG 96 (124)
T ss_pred CCCEEEEeCCCCCHHHHHHHHHCCCceEEEEcCCHHHHHHHHHHHHHhCCCceEEEecccccc-ChhhcCCCCEEEECC
Confidence 35689999999999999999864 35799999762 22344666788877544311 233456899999865
No 7
>smart00138 MeTrc Methyltransferase, chemotaxis proteins. Methylates methyl-accepting chemotaxis proteins to form gamma-glutamyl methyl ester residues.
Probab=98.24 E-value=2.9e-06 Score=72.20 Aligned_cols=95 Identities=17% Similarity=0.214 Sum_probs=61.8
Q ss_pred hHHHHHHHhh---cCCCCccccc-----------cccccc---CCCceeEeeccCCch----hHHHhHHhh------hhh
Q 035595 53 SDAWKRFHSR---HSSGKFFKFT-----------AELSNC---HEAALDAKGNFGNGS----LIADFSVVI------KMK 105 (178)
Q Consensus 53 ~~~Wd~Fy~r---h~~~~FFKdR-----------PEL~~~---~~~~~vLEvGCG~Gn----ta~pll~~~------~~~ 105 (178)
.+.|+.|... |. ..||.|. |+|... .+..+|+++|||||- .|+.|+... ..+
T Consensus 56 ~~e~~~l~~~lti~~-T~FfR~~~~~~~l~~~vlp~l~~~~~~~~~~ri~d~GCgtGee~YslA~~l~e~~~~~~~~~~~ 134 (264)
T smart00138 56 EEELAELLDLMTTNE-TRFFRESKHFEALEEKVLPLLIASRRHGRRVRIWSAGCSTGEEPYSLAMLLAETLPKAREPDVK 134 (264)
T ss_pred HHHHHHHHHHhhcCC-CcccCCcHHHHHHHHHHhHHHHHhcCCCCCEEEEeccccCChHHHHHHHHHHHHhhhcCCCCeE
Confidence 4678888743 44 5899988 655432 245799999999996 455555432 247
Q ss_pred eeeeecccc---cccCCC--------------------------------cceEEEEcccccCCCCCCCCCcceEeeeeh
Q 035595 106 ILASLVDGE---YYNNGH--------------------------------ENFSFLVDGEYYSNCPAVSGSQNYVILANL 150 (178)
Q Consensus 106 i~AtD~s~k---~~~~g~--------------------------------~N~~F~~~~~~~s~~p~~~~s~~~vil~nl 150 (178)
++|||++.. .+..|+ .++.|.+.+.. ..++ ..++.|+|+..|+
T Consensus 135 I~g~Dis~~~L~~Ar~~~y~~~~~~~~~~~~~~~yf~~~~~~~~v~~~ir~~V~F~~~dl~-~~~~-~~~~fD~I~crnv 212 (264)
T smart00138 135 ILATDIDLKALEKARAGIYPERELEDLPKALLARYFSRVEDKYRVKPELKERVRFAKHNLL-AESP-PLGDFDLIFCRNV 212 (264)
T ss_pred EEEEECCHHHHHHHHcCCCCHHHHhcCCHHHHhhhEEeCCCeEEEChHHhCcCEEeeccCC-CCCC-ccCCCCEEEechh
Confidence 999998821 112221 25788887665 2222 3678999998775
No 8
>PRK11207 tellurite resistance protein TehB; Provisional
Probab=98.22 E-value=2.5e-06 Score=69.00 Aligned_cols=75 Identities=11% Similarity=0.021 Sum_probs=52.9
Q ss_pred ccccccc---cCCCceeEeeccCCchhHHHhHHhhhhheeeeecc--------cccccCCCcceEEEEcccccCCCCCCC
Q 035595 71 FTAELSN---CHEAALDAKGNFGNGSLIADFSVVIKMKILASLVD--------GEYYNNGHENFSFLVDGEYYSNCPAVS 139 (178)
Q Consensus 71 dRPEL~~---~~~~~~vLEvGCG~Gnta~pll~~~~~~i~AtD~s--------~k~~~~g~~N~~F~~~~~~~s~~p~~~ 139 (178)
-+|+|.. ..+..+|||+|||+|..++.|+... .+++|+|.+ ++....++.|+.+...... ..+ ++
T Consensus 18 ~~~~l~~~l~~~~~~~vLDiGcG~G~~a~~La~~g-~~V~gvD~S~~~i~~a~~~~~~~~~~~v~~~~~d~~-~~~--~~ 93 (197)
T PRK11207 18 THSEVLEAVKVVKPGKTLDLGCGNGRNSLYLAANG-FDVTAWDKNPMSIANLERIKAAENLDNLHTAVVDLN-NLT--FD 93 (197)
T ss_pred ChHHHHHhcccCCCCcEEEECCCCCHHHHHHHHCC-CEEEEEeCCHHHHHHHHHHHHHcCCCcceEEecChh-hCC--cC
Confidence 3355543 2356899999999999999999875 489999987 2344567777888775543 222 35
Q ss_pred CCcceEeeee
Q 035595 140 GSQNYVILAN 149 (178)
Q Consensus 140 ~s~~~vil~n 149 (178)
++.|+|+..+
T Consensus 94 ~~fD~I~~~~ 103 (197)
T PRK11207 94 GEYDFILSTV 103 (197)
T ss_pred CCcCEEEEec
Confidence 7799887654
No 9
>PLN02233 ubiquinone biosynthesis methyltransferase
Probab=98.21 E-value=3.9e-06 Score=70.99 Aligned_cols=71 Identities=10% Similarity=-0.017 Sum_probs=50.5
Q ss_pred ccCCCceeEeeccCCchhHHHhHHhh--hhheeeeecccc--------c---ccCCCcceEEEEcccccCCCCCCCCCcc
Q 035595 77 NCHEAALDAKGNFGNGSLIADFSVVI--KMKILASLVDGE--------Y---YNNGHENFSFLVDGEYYSNCPAVSGSQN 143 (178)
Q Consensus 77 ~~~~~~~vLEvGCG~Gnta~pll~~~--~~~i~AtD~s~k--------~---~~~g~~N~~F~~~~~~~s~~p~~~~s~~ 143 (178)
...+..+|||+|||||..+.+|+... ..+++|+|++.. . ...+..|+.|..+... .+|- -.++.|
T Consensus 70 ~~~~~~~VLDlGcGtG~~~~~la~~~~~~~~V~gvD~S~~ml~~A~~r~~~~~~~~~~~i~~~~~d~~-~lp~-~~~sfD 147 (261)
T PLN02233 70 GAKMGDRVLDLCCGSGDLAFLLSEKVGSDGKVMGLDFSSEQLAVAASRQELKAKSCYKNIEWIEGDAT-DLPF-DDCYFD 147 (261)
T ss_pred CCCCCCEEEEECCcCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhhhhhccCCCeEEEEcccc-cCCC-CCCCEe
Confidence 33567899999999999999998764 247999998821 1 1224568999987764 4431 156899
Q ss_pred eEeeee
Q 035595 144 YVILAN 149 (178)
Q Consensus 144 ~vil~n 149 (178)
+|++..
T Consensus 148 ~V~~~~ 153 (261)
T PLN02233 148 AITMGY 153 (261)
T ss_pred EEEEec
Confidence 998753
No 10
>PRK00121 trmB tRNA (guanine-N(7)-)-methyltransferase; Reviewed
Probab=98.21 E-value=1.5e-06 Score=70.67 Aligned_cols=69 Identities=16% Similarity=0.279 Sum_probs=51.1
Q ss_pred CCceeEeeccCCchhHHHhHHhh-hhheeeeecc--------cccccCCCcceEEEEcccccCCCCCC-CCCcceEeee
Q 035595 80 EAALDAKGNFGNGSLIADFSVVI-KMKILASLVD--------GEYYNNGHENFSFLVDGEYYSNCPAV-SGSQNYVILA 148 (178)
Q Consensus 80 ~~~~vLEvGCG~Gnta~pll~~~-~~~i~AtD~s--------~k~~~~g~~N~~F~~~~~~~s~~p~~-~~s~~~vil~ 148 (178)
+..+|||+|||+|..++.|+... ...++++|.+ ++....+..|+.|.++.....++..+ +++.|+|++.
T Consensus 40 ~~~~VLDiGcGtG~~~~~la~~~p~~~v~gVD~s~~~i~~a~~~~~~~~~~~v~~~~~d~~~~l~~~~~~~~~D~V~~~ 118 (202)
T PRK00121 40 DAPIHLEIGFGKGEFLVEMAKANPDINFIGIEVHEPGVGKALKKIEEEGLTNLRLLCGDAVEVLLDMFPDGSLDRIYLN 118 (202)
T ss_pred CCCeEEEEccCCCHHHHHHHHHCCCccEEEEEechHHHHHHHHHHHHcCCCCEEEEecCHHHHHHHHcCccccceEEEE
Confidence 46789999999999999998764 3479999987 23344567789999977622444445 6789988863
No 11
>PRK11036 putative S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=98.20 E-value=1.5e-06 Score=72.11 Aligned_cols=69 Identities=7% Similarity=0.107 Sum_probs=50.9
Q ss_pred CCceeEeeccCCchhHHHhHHhhhhheeeeecc--------cccccCCC-cceEEEEcccccCCCCCCCCCcceEeeeeh
Q 035595 80 EAALDAKGNFGNGSLIADFSVVIKMKILASLVD--------GEYYNNGH-ENFSFLVDGEYYSNCPAVSGSQNYVILANL 150 (178)
Q Consensus 80 ~~~~vLEvGCG~Gnta~pll~~~~~~i~AtD~s--------~k~~~~g~-~N~~F~~~~~~~s~~p~~~~s~~~vil~nl 150 (178)
.+.+|||+|||+|..+..|+... .+++++|++ ++....|. .+++|..+... .+++-.+++.|+|++.+.
T Consensus 44 ~~~~vLDiGcG~G~~a~~la~~g-~~v~~vD~s~~~l~~a~~~~~~~g~~~~v~~~~~d~~-~l~~~~~~~fD~V~~~~v 121 (255)
T PRK11036 44 RPLRVLDAGGGEGQTAIKLAELG-HQVILCDLSAEMIQRAKQAAEAKGVSDNMQFIHCAAQ-DIAQHLETPVDLILFHAV 121 (255)
T ss_pred CCCEEEEeCCCchHHHHHHHHcC-CEEEEEECCHHHHHHHHHHHHhcCCccceEEEEcCHH-HHhhhcCCCCCEEEehhH
Confidence 45799999999999999999876 489999987 23333454 46888887664 344444678899987653
No 12
>PF08241 Methyltransf_11: Methyltransferase domain; InterPro: IPR013216 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Arsenite methyltransferase (2.1.1.137 from EC) which converts arsenical compounds to their methylated forms [] Biotin synthesis protein bioC, which is involved in the early stages of biotin biosyntheis [] Arginine N-methyltransferase 1, an arginine-methylating enzyme which acts on residues present in a glycine and argine-rich domain and can methylate histones [] Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Sterol 24-C-methyltransferase (2.1.1.41 from EC), shown to participate in ergosterol biosynthesis [] 3-demethylubiquinone-9 3-methyltransferase (2.1.1.64 from EC) involved in ubiquinone biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ]. ; GO: 0008168 methyltransferase activity, 0008152 metabolic process; PDB: 3CGG_B 3CCF_B 3BKW_B 2PXX_A 3I9F_A 2YQZ_B 2YR0_A 3BUS_A 3EGE_A 3G5L_B ....
Probab=98.14 E-value=5.9e-06 Score=55.93 Aligned_cols=66 Identities=15% Similarity=0.067 Sum_probs=43.9
Q ss_pred EeeccCCchhHHHhHHhhhhheeeeecccc-----cccCCCcceEEEEcccccCCCCCCCCCcceEeeeehhh
Q 035595 85 AKGNFGNGSLIADFSVVIKMKILASLVDGE-----YYNNGHENFSFLVDGEYYSNCPAVSGSQNYVILANLKS 152 (178)
Q Consensus 85 LEvGCG~Gnta~pll~~~~~~i~AtD~s~k-----~~~~g~~N~~F~~~~~~~s~~p~~~~s~~~vil~nl~~ 152 (178)
||+|||+|.++..|+..-...++++|.+.. .......++.|...... .+ |--++|.|+|++.+.-.
T Consensus 1 LdiG~G~G~~~~~l~~~~~~~v~~~D~~~~~~~~~~~~~~~~~~~~~~~d~~-~l-~~~~~sfD~v~~~~~~~ 71 (95)
T PF08241_consen 1 LDIGCGTGRFAAALAKRGGASVTGIDISEEMLEQARKRLKNEGVSFRQGDAE-DL-PFPDNSFDVVFSNSVLH 71 (95)
T ss_dssp EEET-TTSHHHHHHHHTTTCEEEEEES-HHHHHHHHHHTTTSTEEEEESBTT-SS-SS-TT-EEEEEEESHGG
T ss_pred CEecCcCCHHHHHHHhccCCEEEEEeCCHHHHHHHHhcccccCchheeehHH-hC-cccccccccccccccee
Confidence 899999999999999993359999998722 11122344567776654 44 22278999999987643
No 13
>TIGR02752 MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone methyltransferase. MenG is a generic term for a methyltransferase that catalyzes the last step in menaquinone biosynthesis; the exact enzymatic activity differs for different MenG because the menaquinone differ in their prenoid side chains in different species. Members of this MenG protein family are 2-heptaprenyl-1,4-naphthoquinone methyltransferase, and are found together in operons with the two subunits of the heptaprenyl diphosphate synthase in Bacillus subtilis and related species.
Probab=98.09 E-value=8.8e-06 Score=65.59 Aligned_cols=68 Identities=9% Similarity=0.079 Sum_probs=49.7
Q ss_pred CCCceeEeeccCCchhHHHhHHhh--hhheeeeecc--------cccccCCCcceEEEEcccccCCCCCCCCCcceEeee
Q 035595 79 HEAALDAKGNFGNGSLIADFSVVI--KMKILASLVD--------GEYYNNGHENFSFLVDGEYYSNCPAVSGSQNYVILA 148 (178)
Q Consensus 79 ~~~~~vLEvGCG~Gnta~pll~~~--~~~i~AtD~s--------~k~~~~g~~N~~F~~~~~~~s~~p~~~~s~~~vil~ 148 (178)
.+..+|||+|||+|..+..++... ..+++++|++ ++....+..+++|..+... .++. -+++.|+|++.
T Consensus 44 ~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~-~~~~-~~~~fD~V~~~ 121 (231)
T TIGR02752 44 QAGTSALDVCCGTADWSIALAEAVGPEGHVIGLDFSENMLSVGRQKVKDAGLHNVELVHGNAM-ELPF-DDNSFDYVTIG 121 (231)
T ss_pred CCCCEEEEeCCCcCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHhcCCCceEEEEechh-cCCC-CCCCccEEEEe
Confidence 456899999999999999999864 3489999987 2334456678888887664 2321 15688998864
No 14
>PRK00107 gidB 16S rRNA methyltransferase GidB; Reviewed
Probab=98.08 E-value=6.5e-06 Score=67.48 Aligned_cols=66 Identities=9% Similarity=-0.080 Sum_probs=51.1
Q ss_pred CceeEeeccCCchhHHHhHHhh-hhheeeeecc--------cccccCCCcceEEEEcccccCCCCCCCCCcceEeeee
Q 035595 81 AALDAKGNFGNGSLIADFSVVI-KMKILASLVD--------GEYYNNGHENFSFLVDGEYYSNCPAVSGSQNYVILAN 149 (178)
Q Consensus 81 ~~~vLEvGCG~Gnta~pll~~~-~~~i~AtD~s--------~k~~~~g~~N~~F~~~~~~~s~~p~~~~s~~~vil~n 149 (178)
..+|||+|||+|..++.++... ..+++++|.+ ++....+..|+.|..+... ..++ +++.|+|+.-.
T Consensus 46 g~~VLDiGcGtG~~al~la~~~~~~~V~giD~s~~~l~~A~~~~~~~~l~~i~~~~~d~~-~~~~--~~~fDlV~~~~ 120 (187)
T PRK00107 46 GERVLDVGSGAGFPGIPLAIARPELKVTLVDSLGKKIAFLREVAAELGLKNVTVVHGRAE-EFGQ--EEKFDVVTSRA 120 (187)
T ss_pred CCeEEEEcCCCCHHHHHHHHHCCCCeEEEEeCcHHHHHHHHHHHHHcCCCCEEEEeccHh-hCCC--CCCccEEEEcc
Confidence 6789999999999999998642 4589999977 3445667778999988765 3443 67899998744
No 15
>TIGR02021 BchM-ChlM magnesium protoporphyrin O-methyltransferase. This model represents the S-adenosylmethionine-dependent O-methyltransferase responsible for methylation of magnesium protoporphyrin IX. This step is essentiasl for the biosynthesis of both chlorophyll and bacteriochlorophyll. This model encompasses two closely related clades, from cyanobacteria (and plants) where it is called ChlM and other photosynthetic bacteria where it is known as BchM.
Probab=98.07 E-value=6.8e-06 Score=66.38 Aligned_cols=65 Identities=17% Similarity=0.170 Sum_probs=47.0
Q ss_pred CCCceeEeeccCCchhHHHhHHhhhhheeeeecc--------cccccCCC-cceEEEEcccccCCCCCCCCCcceEeeee
Q 035595 79 HEAALDAKGNFGNGSLIADFSVVIKMKILASLVD--------GEYYNNGH-ENFSFLVDGEYYSNCPAVSGSQNYVILAN 149 (178)
Q Consensus 79 ~~~~~vLEvGCG~Gnta~pll~~~~~~i~AtD~s--------~k~~~~g~-~N~~F~~~~~~~s~~p~~~~s~~~vil~n 149 (178)
.+..+|||+|||+|..+..++.... +++++|++ ++....+. .++.|..+... .++ ++.|+|+..+
T Consensus 54 ~~~~~vLDiGcG~G~~~~~la~~~~-~v~gvD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~-~~~----~~fD~ii~~~ 127 (219)
T TIGR02021 54 LKGKRVLDAGCGTGLLSIELAKRGA-IVKAVDISEQMVQMARNRAQGRDVAGNVEFEVNDLL-SLC----GEFDIVVCMD 127 (219)
T ss_pred CCCCEEEEEeCCCCHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHhcCCCCceEEEECChh-hCC----CCcCEEEEhh
Confidence 3568999999999999999988754 89999987 22222333 47888886654 322 6788887644
No 16
>TIGR00477 tehB tellurite resistance protein TehB. Part of a tellurite-reducing operon tehA and tehB
Probab=98.06 E-value=4.4e-06 Score=67.46 Aligned_cols=64 Identities=8% Similarity=-0.045 Sum_probs=43.7
Q ss_pred CCceeEeeccCCchhHHHhHHhhhhheeeeeccc--------ccccCCCcceEEEEcccccCCCCCCCCCcceEeee
Q 035595 80 EAALDAKGNFGNGSLIADFSVVIKMKILASLVDG--------EYYNNGHENFSFLVDGEYYSNCPAVSGSQNYVILA 148 (178)
Q Consensus 80 ~~~~vLEvGCG~Gnta~pll~~~~~~i~AtD~s~--------k~~~~g~~N~~F~~~~~~~s~~p~~~~s~~~vil~ 148 (178)
++.+|||+|||+|..+.+|+... ..++|+|++. ++...++. +.+...... . ..++++.|+|+..
T Consensus 30 ~~~~vLDiGcG~G~~a~~la~~g-~~V~~iD~s~~~l~~a~~~~~~~~~~-v~~~~~d~~-~--~~~~~~fD~I~~~ 101 (195)
T TIGR00477 30 APCKTLDLGCGQGRNSLYLSLAG-YDVRAWDHNPASIASVLDMKARENLP-LRTDAYDIN-A--AALNEDYDFIFST 101 (195)
T ss_pred CCCcEEEeCCCCCHHHHHHHHCC-CeEEEEECCHHHHHHHHHHHHHhCCC-ceeEeccch-h--ccccCCCCEEEEe
Confidence 46799999999999999999865 5899999872 22333443 555443332 1 1245678988754
No 17
>TIGR00138 gidB 16S rRNA methyltransferase GidB. GidB (glucose-inhibited division protein B) appears to be present and in a single copy in nearly all complete eubacterial genomes. It is missing only from some obligate intracellular species of various lineages (Chlamydiae, Ehrlichia, Wolbachia, Anaplasma, Buchnera, etc.). GidB shows a methytransferase fold in its the crystal structure, and acts as a 7-methylguanosine (m(7)G) methyltransferase, apparently specific to 16S rRNA.
Probab=98.06 E-value=6.4e-06 Score=66.61 Aligned_cols=66 Identities=8% Similarity=-0.073 Sum_probs=48.6
Q ss_pred CceeEeeccCCchhHHHhHHhh-hhheeeeeccc--------ccccCCCcceEEEEcccccCCCCCCCCCcceEeeee
Q 035595 81 AALDAKGNFGNGSLIADFSVVI-KMKILASLVDG--------EYYNNGHENFSFLVDGEYYSNCPAVSGSQNYVILAN 149 (178)
Q Consensus 81 ~~~vLEvGCG~Gnta~pll~~~-~~~i~AtD~s~--------k~~~~g~~N~~F~~~~~~~s~~p~~~~s~~~vil~n 149 (178)
..+|||+|||+|..++.++... ..+++|+|.+. .....|..|+.|..+... .++ ..++.|+|+...
T Consensus 43 ~~~vLDiGcGtG~~s~~la~~~~~~~V~~iD~s~~~~~~a~~~~~~~~~~~i~~i~~d~~-~~~--~~~~fD~I~s~~ 117 (181)
T TIGR00138 43 GKKVIDIGSGAGFPGIPLAIARPELKLTLLESNHKKVAFLREVKAELGLNNVEIVNGRAE-DFQ--HEEQFDVITSRA 117 (181)
T ss_pred CCeEEEecCCCCccHHHHHHHCCCCeEEEEeCcHHHHHHHHHHHHHhCCCCeEEEecchh-hcc--ccCCccEEEehh
Confidence 6799999999999999988643 34799999873 233457778999887764 232 257899876643
No 18
>PLN02244 tocopherol O-methyltransferase
Probab=98.05 E-value=1.2e-05 Score=70.51 Aligned_cols=68 Identities=12% Similarity=0.024 Sum_probs=49.2
Q ss_pred CCCceeEeeccCCchhHHHhHHhhhhheeeeeccc--------ccccCCC-cceEEEEcccccCCCCCCCCCcceEeee
Q 035595 79 HEAALDAKGNFGNGSLIADFSVVIKMKILASLVDG--------EYYNNGH-ENFSFLVDGEYYSNCPAVSGSQNYVILA 148 (178)
Q Consensus 79 ~~~~~vLEvGCG~Gnta~pll~~~~~~i~AtD~s~--------k~~~~g~-~N~~F~~~~~~~s~~p~~~~s~~~vil~ 148 (178)
.+..+|||||||+|.++..|+.....+++++|++. ++...|. .++.|..++.. .+| --.++.|+|+..
T Consensus 117 ~~~~~VLDiGCG~G~~~~~La~~~g~~v~gvD~s~~~i~~a~~~~~~~g~~~~v~~~~~D~~-~~~-~~~~~FD~V~s~ 193 (340)
T PLN02244 117 KRPKRIVDVGCGIGGSSRYLARKYGANVKGITLSPVQAARANALAAAQGLSDKVSFQVADAL-NQP-FEDGQFDLVWSM 193 (340)
T ss_pred CCCCeEEEecCCCCHHHHHHHHhcCCEEEEEECCHHHHHHHHHHHHhcCCCCceEEEEcCcc-cCC-CCCCCccEEEEC
Confidence 35678999999999999999986555899999872 2333455 46999987664 232 125788988764
No 19
>TIGR00080 pimt protein-L-isoaspartate(D-aspartate) O-methyltransferase. Among the prokaryotes, the gene name is pcm. Among eukaryotes, pimt.
Probab=98.03 E-value=1.3e-05 Score=65.14 Aligned_cols=70 Identities=10% Similarity=0.023 Sum_probs=50.1
Q ss_pred ccCCCceeEeeccCCchhHHHhHHhhh--hheeeeecc--------cccccCCCcceEEEEcccccCCCCCCCCCcceEe
Q 035595 77 NCHEAALDAKGNFGNGSLIADFSVVIK--MKILASLVD--------GEYYNNGHENFSFLVDGEYYSNCPAVSGSQNYVI 146 (178)
Q Consensus 77 ~~~~~~~vLEvGCG~Gnta~pll~~~~--~~i~AtD~s--------~k~~~~g~~N~~F~~~~~~~s~~p~~~~s~~~vi 146 (178)
...+..+|||||||+|..+..|+.... .+++++|++ ++....|..|+.|..+......+. .+..|+++
T Consensus 74 ~~~~~~~VLDiG~GsG~~a~~la~~~~~~g~V~~vD~~~~~~~~A~~~~~~~g~~~v~~~~~d~~~~~~~--~~~fD~Ii 151 (215)
T TIGR00080 74 ELKPGMKVLEIGTGSGYQAAVLAEIVGRDGLVVSIERIPELAEKAERRLRKLGLDNVIVIVGDGTQGWEP--LAPYDRIY 151 (215)
T ss_pred CCCCcCEEEEECCCccHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHCCCCCeEEEECCcccCCcc--cCCCCEEE
Confidence 335678999999999999998888764 248999976 344556788899998665422221 35678777
Q ss_pred ee
Q 035595 147 LA 148 (178)
Q Consensus 147 l~ 148 (178)
+-
T Consensus 152 ~~ 153 (215)
T TIGR00080 152 VT 153 (215)
T ss_pred Ec
Confidence 54
No 20
>PF01209 Ubie_methyltran: ubiE/COQ5 methyltransferase family; InterPro: IPR004033 A number of methyltransferases have been shown to share regions of similarities []. Apart from the ubiquinone/menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the ubiE gene of Escherichia coli), the ubiquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the COQ5 gene of Saccharomyces cerevisiae) and the menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the MENH gene of Bacillus subtilis), this family also includes methyltransferases involved in biotin and sterol biosynthesis and in phosphatidylethanolamine methylation.; GO: 0008168 methyltransferase activity; PDB: 1VL5_C.
Probab=98.00 E-value=8.4e-06 Score=68.76 Aligned_cols=70 Identities=11% Similarity=0.099 Sum_probs=45.2
Q ss_pred ccCCCceeEeeccCCchhHHHhHHhh--hhheeeeecc--------cccccCCCcceEEEEcccccCCCCCCCCCcceEe
Q 035595 77 NCHEAALDAKGNFGNGSLIADFSVVI--KMKILASLVD--------GEYYNNGHENFSFLVDGEYYSNCPAVSGSQNYVI 146 (178)
Q Consensus 77 ~~~~~~~vLEvGCG~Gnta~pll~~~--~~~i~AtD~s--------~k~~~~g~~N~~F~~~~~~~s~~p~~~~s~~~vi 146 (178)
...+..+||++|||||..++.|+... ..+++++|++ +|....+..|++|.++.+. .+|- -..|.|+|+
T Consensus 44 ~~~~g~~vLDv~~GtG~~~~~l~~~~~~~~~v~~vD~s~~ML~~a~~k~~~~~~~~i~~v~~da~-~lp~-~d~sfD~v~ 121 (233)
T PF01209_consen 44 GLRPGDRVLDVACGTGDVTRELARRVGPNGKVVGVDISPGMLEVARKKLKREGLQNIEFVQGDAE-DLPF-PDNSFDAVT 121 (233)
T ss_dssp T--S--EEEEET-TTSHHHHHHGGGSS---EEEEEES-HHHHHHHHHHHHHTT--SEEEEE-BTT-B--S--TT-EEEEE
T ss_pred CCCCCCEEEEeCCChHHHHHHHHHHCCCccEEEEecCCHHHHHHHHHHHHhhCCCCeeEEEcCHH-HhcC-CCCceeEEE
Confidence 34567899999999999999999864 3589999977 5666777889999998775 3441 158999998
Q ss_pred ee
Q 035595 147 LA 148 (178)
Q Consensus 147 l~ 148 (178)
+.
T Consensus 122 ~~ 123 (233)
T PF01209_consen 122 CS 123 (233)
T ss_dssp EE
T ss_pred HH
Confidence 54
No 21
>TIGR00091 tRNA (guanine-N(7)-)-methyltransferase. In E. coli, this protein flanks the DNA repair protein MutY, also called micA.
Probab=97.99 E-value=5.6e-06 Score=66.64 Aligned_cols=65 Identities=18% Similarity=0.223 Sum_probs=47.5
Q ss_pred ceeEeeccCCchhHHHhHHhh-hhheeeeecc--------cccccCCCcceEEEEcccccCCCCC-C-CCCcceEee
Q 035595 82 ALDAKGNFGNGSLIADFSVVI-KMKILASLVD--------GEYYNNGHENFSFLVDGEYYSNCPA-V-SGSQNYVIL 147 (178)
Q Consensus 82 ~~vLEvGCG~Gnta~pll~~~-~~~i~AtD~s--------~k~~~~g~~N~~F~~~~~~~s~~p~-~-~~s~~~vil 147 (178)
.+|||||||+|..++.++... ...++++|++ +++...|..|+.|.++... .+++. + .+++|.+++
T Consensus 18 ~~ilDiGcG~G~~~~~la~~~p~~~v~gvD~~~~~l~~a~~~~~~~~l~ni~~i~~d~~-~~~~~~~~~~~~d~v~~ 93 (194)
T TIGR00091 18 PLHLEIGCGKGRFLIDMAKQNPDKNFLGIEIHTPIVLAANNKANKLGLKNLHVLCGDAN-ELLDKFFPDGSLSKVFL 93 (194)
T ss_pred ceEEEeCCCccHHHHHHHHhCCCCCEEEEEeeHHHHHHHHHHHHHhCCCCEEEEccCHH-HHHHhhCCCCceeEEEE
Confidence 479999999999999999864 4588999976 3344567789999988774 22222 2 347886654
No 22
>PRK07580 Mg-protoporphyrin IX methyl transferase; Validated
Probab=97.97 E-value=1.4e-05 Score=63.87 Aligned_cols=65 Identities=20% Similarity=0.153 Sum_probs=45.5
Q ss_pred CCCceeEeeccCCchhHHHhHHhhhhheeeeecc--------cccccCCC-cceEEEEcccccCCCCCCCCCcceEeeee
Q 035595 79 HEAALDAKGNFGNGSLIADFSVVIKMKILASLVD--------GEYYNNGH-ENFSFLVDGEYYSNCPAVSGSQNYVILAN 149 (178)
Q Consensus 79 ~~~~~vLEvGCG~Gnta~pll~~~~~~i~AtD~s--------~k~~~~g~-~N~~F~~~~~~~s~~p~~~~s~~~vil~n 149 (178)
.+..+|||||||+|..+..|+.... .++++|++ ++....+. .++.|..+... ...++.|+|+..+
T Consensus 62 ~~~~~vLDvGcG~G~~~~~l~~~~~-~v~~~D~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~-----~~~~~fD~v~~~~ 135 (230)
T PRK07580 62 LTGLRILDAGCGVGSLSIPLARRGA-KVVASDISPQMVEEARERAPEAGLAGNITFEVGDLE-----SLLGRFDTVVCLD 135 (230)
T ss_pred CCCCEEEEEeCCCCHHHHHHHHcCC-EEEEEECCHHHHHHHHHHHHhcCCccCcEEEEcCch-----hccCCcCEEEEcc
Confidence 3567999999999999999998754 69999977 22233444 46888876521 1246778776644
No 23
>COG2226 UbiE Methylase involved in ubiquinone/menaquinone biosynthesis [Coenzyme metabolism]
Probab=97.96 E-value=1.8e-05 Score=68.16 Aligned_cols=66 Identities=12% Similarity=0.135 Sum_probs=54.8
Q ss_pred CCCceeEeeccCCchhHHHhHHhh-hhheeeeecc--------cccccCCCcceEEEEcccccCCCCCC-CCCcceEee
Q 035595 79 HEAALDAKGNFGNGSLIADFSVVI-KMKILASLVD--------GEYYNNGHENFSFLVDGEYYSNCPAV-SGSQNYVIL 147 (178)
Q Consensus 79 ~~~~~vLEvGCG~Gnta~pll~~~-~~~i~AtD~s--------~k~~~~g~~N~~F~~~~~~~s~~p~~-~~s~~~vil 147 (178)
.+..+|||||||||..++-++..+ .-+++++|++ +|+.+.|..++.|+.+++. .|| + ..|-|+|.+
T Consensus 50 ~~g~~vLDva~GTGd~a~~~~k~~g~g~v~~~D~s~~ML~~a~~k~~~~~~~~i~fv~~dAe-~LP--f~D~sFD~vt~ 125 (238)
T COG2226 50 KPGDKVLDVACGTGDMALLLAKSVGTGEVVGLDISESMLEVAREKLKKKGVQNVEFVVGDAE-NLP--FPDNSFDAVTI 125 (238)
T ss_pred CCCCEEEEecCCccHHHHHHHHhcCCceEEEEECCHHHHHHHHHHhhccCccceEEEEechh-hCC--CCCCccCEEEe
Confidence 368999999999999999999977 3489999977 7777888888999999986 566 5 567777765
No 24
>PRK00312 pcm protein-L-isoaspartate O-methyltransferase; Reviewed
Probab=97.93 E-value=2.9e-05 Score=62.59 Aligned_cols=69 Identities=9% Similarity=0.036 Sum_probs=49.2
Q ss_pred cCCCceeEeeccCCchhHHHhHHhhhhheeeeecc--------cccccCCCcceEEEEcccccCCCCCCCCCcceEeeee
Q 035595 78 CHEAALDAKGNFGNGSLIADFSVVIKMKILASLVD--------GEYYNNGHENFSFLVDGEYYSNCPAVSGSQNYVILAN 149 (178)
Q Consensus 78 ~~~~~~vLEvGCG~Gnta~pll~~~~~~i~AtD~s--------~k~~~~g~~N~~F~~~~~~~s~~p~~~~s~~~vil~n 149 (178)
..+..+|||+|||+|..+..++.... +++++|.+ ++....|..|++|..+......++ .+..|++++-+
T Consensus 76 ~~~~~~VLeiG~GsG~~t~~la~~~~-~v~~vd~~~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~--~~~fD~I~~~~ 152 (212)
T PRK00312 76 LKPGDRVLEIGTGSGYQAAVLAHLVR-RVFSVERIKTLQWEAKRRLKQLGLHNVSVRHGDGWKGWPA--YAPFDRILVTA 152 (212)
T ss_pred CCCCCEEEEECCCccHHHHHHHHHhC-EEEEEeCCHHHHHHHHHHHHHCCCCceEEEECCcccCCCc--CCCcCEEEEcc
Confidence 34678999999999999887776654 78999966 333445778899888765423322 36788888754
No 25
>PRK14103 trans-aconitate 2-methyltransferase; Provisional
Probab=97.91 E-value=1.6e-05 Score=65.93 Aligned_cols=68 Identities=13% Similarity=-0.018 Sum_probs=47.7
Q ss_pred CCCceeEeeccCCchhHHHhHHhh-hhheeeeecccccc-cCCCcceEEEEcccccCCCCCCCCCcceEeeee
Q 035595 79 HEAALDAKGNFGNGSLIADFSVVI-KMKILASLVDGEYY-NNGHENFSFLVDGEYYSNCPAVSGSQNYVILAN 149 (178)
Q Consensus 79 ~~~~~vLEvGCG~Gnta~pll~~~-~~~i~AtD~s~k~~-~~g~~N~~F~~~~~~~s~~p~~~~s~~~vil~n 149 (178)
.+..+|||||||+|..+..|+... ..+++++|++...- .+.-.+++|..+... .+++ .++.|+|+..+
T Consensus 28 ~~~~~vLDlGcG~G~~~~~l~~~~p~~~v~gvD~s~~~~~~a~~~~~~~~~~d~~-~~~~--~~~fD~v~~~~ 97 (255)
T PRK14103 28 ERARRVVDLGCGPGNLTRYLARRWPGAVIEALDSSPEMVAAARERGVDARTGDVR-DWKP--KPDTDVVVSNA 97 (255)
T ss_pred CCCCEEEEEcCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHhcCCcEEEcChh-hCCC--CCCceEEEEeh
Confidence 456899999999999999998863 35899999983221 111136788886654 3432 46889888754
No 26
>TIGR03587 Pse_Me-ase pseudaminic acid biosynthesis-associated methylase. Members of this small clade are methyltransferases of the pfam08241 family and are observed within operons for the biosynthesis of pseudaminic acid, a component of exopolysaccharide and flagellin glycosyl modifications. Notable among these genomes is Pseudomonas fluorescens PfO-1. Possibly one of the two hydroxyl groups of pseudaminic acid, at positions 4 and 8 is converted to a methoxy group by this enzyme
Probab=97.90 E-value=1.7e-05 Score=65.31 Aligned_cols=68 Identities=10% Similarity=0.025 Sum_probs=46.7
Q ss_pred CCCceeEeeccCCchhHHHhHHhh-hhheeeeeccccc---ccCCCcceEEEEcccccCCCCCCCCCcceEeeee
Q 035595 79 HEAALDAKGNFGNGSLIADFSVVI-KMKILASLVDGEY---YNNGHENFSFLVDGEYYSNCPAVSGSQNYVILAN 149 (178)
Q Consensus 79 ~~~~~vLEvGCG~Gnta~pll~~~-~~~i~AtD~s~k~---~~~g~~N~~F~~~~~~~s~~p~~~~s~~~vil~n 149 (178)
.+..+|||||||+|..+..|+... ...++|+|++..+ +.....++.|..+... . |--.++.|+|+..+
T Consensus 42 ~~~~~VLDiGCG~G~~~~~L~~~~~~~~v~giDiS~~~l~~A~~~~~~~~~~~~d~~-~--~~~~~sfD~V~~~~ 113 (204)
T TIGR03587 42 PKIASILELGANIGMNLAALKRLLPFKHIYGVEINEYAVEKAKAYLPNINIIQGSLF-D--PFKDNFFDLVLTKG 113 (204)
T ss_pred CCCCcEEEEecCCCHHHHHHHHhCCCCeEEEEECCHHHHHHHHhhCCCCcEEEeecc-C--CCCCCCEEEEEECC
Confidence 356789999999999999998862 3589999988332 1122334666665443 2 33367899998655
No 27
>PRK08287 cobalt-precorrin-6Y C(15)-methyltransferase; Validated
Probab=97.89 E-value=2.7e-05 Score=61.61 Aligned_cols=67 Identities=13% Similarity=0.171 Sum_probs=48.3
Q ss_pred CCCceeEeeccCCchhHHHhHHhh-hhheeeeeccc--------ccccCCCcceEEEEcccccCCCCCCCCCcceEeeee
Q 035595 79 HEAALDAKGNFGNGSLIADFSVVI-KMKILASLVDG--------EYYNNGHENFSFLVDGEYYSNCPAVSGSQNYVILAN 149 (178)
Q Consensus 79 ~~~~~vLEvGCG~Gnta~pll~~~-~~~i~AtD~s~--------k~~~~g~~N~~F~~~~~~~s~~p~~~~s~~~vil~n 149 (178)
.+..+|||+|||+|..++.++... ..+++++|++. .....+..++.|..+... ..++++.|++++.+
T Consensus 30 ~~~~~vLDiG~G~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~n~~~~~~~~i~~~~~d~~----~~~~~~~D~v~~~~ 105 (187)
T PRK08287 30 HRAKHLIDVGAGTGSVSIEAALQFPSLQVTAIERNPDALRLIKENRQRFGCGNIDIIPGEAP----IELPGKADAIFIGG 105 (187)
T ss_pred CCCCEEEEECCcCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHhCCCCeEEEecCch----hhcCcCCCEEEECC
Confidence 466799999999999999998864 35899999872 222345567888775432 23467889998754
No 28
>PF13649 Methyltransf_25: Methyltransferase domain; PDB: 3BXO_B 3GGD_A 3PX2_A 3PX3_A 3PFH_D 3PFG_A 1Y8C_A.
Probab=97.88 E-value=8.4e-06 Score=58.31 Aligned_cols=64 Identities=11% Similarity=0.192 Sum_probs=43.0
Q ss_pred eEeeccCCchhHHHhHHhh----hhheeeeecc--------cccccCCCcceEEEEcccccCCCCCCCCCcceEeeeeh
Q 035595 84 DAKGNFGNGSLIADFSVVI----KMKILASLVD--------GEYYNNGHENFSFLVDGEYYSNCPAVSGSQNYVILANL 150 (178)
Q Consensus 84 vLEvGCG~Gnta~pll~~~----~~~i~AtD~s--------~k~~~~g~~N~~F~~~~~~~s~~p~~~~s~~~vil~nl 150 (178)
|||+|||+|..+..++... ...++++|++ ++....+. +++|.++... .++ ...+..|+|+..++
T Consensus 1 ILDlgcG~G~~~~~l~~~~~~~~~~~~~gvD~s~~~l~~~~~~~~~~~~-~~~~~~~D~~-~l~-~~~~~~D~v~~~~~ 76 (101)
T PF13649_consen 1 ILDLGCGTGRVTRALARRFDAGPSSRVIGVDISPEMLELAKKRFSEDGP-KVRFVQADAR-DLP-FSDGKFDLVVCSGL 76 (101)
T ss_dssp -EEET-TTSHHHHHHHHHS-----SEEEEEES-HHHHHHHHHHSHHTTT-TSEEEESCTT-CHH-HHSSSEEEEEE-TT
T ss_pred CEEeecCCcHHHHHHHHHhhhcccceEEEEECCHHHHHHHHHhchhcCC-ceEEEECCHh-HCc-ccCCCeeEEEEcCC
Confidence 7999999999999999874 2589999977 22233344 7899887774 232 23568888888543
No 29
>PRK13942 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=97.86 E-value=3.9e-05 Score=62.98 Aligned_cols=69 Identities=12% Similarity=0.055 Sum_probs=49.7
Q ss_pred CCCceeEeeccCCchhHHHhHHhhh--hheeeeecc--------cccccCCCcceEEEEcccccCCCCCCCCCcceEeee
Q 035595 79 HEAALDAKGNFGNGSLIADFSVVIK--MKILASLVD--------GEYYNNGHENFSFLVDGEYYSNCPAVSGSQNYVILA 148 (178)
Q Consensus 79 ~~~~~vLEvGCG~Gnta~pll~~~~--~~i~AtD~s--------~k~~~~g~~N~~F~~~~~~~s~~p~~~~s~~~vil~ 148 (178)
.+..+|||||||+|..+..|+.... -+++++|++ ++....|..|++|..+......++ .+..|++++.
T Consensus 75 ~~g~~VLdIG~GsG~~t~~la~~~~~~~~V~~vE~~~~~~~~a~~~l~~~g~~~v~~~~gd~~~~~~~--~~~fD~I~~~ 152 (212)
T PRK13942 75 KEGMKVLEIGTGSGYHAAVVAEIVGKSGKVVTIERIPELAEKAKKTLKKLGYDNVEVIVGDGTLGYEE--NAPYDRIYVT 152 (212)
T ss_pred CCcCEEEEECCcccHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCeEEEECCcccCCCc--CCCcCEEEEC
Confidence 4678999999999999988887642 378999977 344455778899998776422222 2567887765
Q ss_pred e
Q 035595 149 N 149 (178)
Q Consensus 149 n 149 (178)
.
T Consensus 153 ~ 153 (212)
T PRK13942 153 A 153 (212)
T ss_pred C
Confidence 4
No 30
>PRK03522 rumB 23S rRNA methyluridine methyltransferase; Reviewed
Probab=97.84 E-value=1.5e-05 Score=68.96 Aligned_cols=66 Identities=11% Similarity=-0.026 Sum_probs=47.5
Q ss_pred CCceeEeeccCCchhHHHhHHhhhhheeeeecc--------cccccCCCcceEEEEcccccCCCCCCCCCcceEee
Q 035595 80 EAALDAKGNFGNGSLIADFSVVIKMKILASLVD--------GEYYNNGHENFSFLVDGEYYSNCPAVSGSQNYVIL 147 (178)
Q Consensus 80 ~~~~vLEvGCG~Gnta~pll~~~~~~i~AtD~s--------~k~~~~g~~N~~F~~~~~~~s~~p~~~~s~~~vil 147 (178)
+..+|||+|||+|..+++++.... +++|+|++ +.+...|+.|++|.+.... ...+...+..|+||+
T Consensus 173 ~~~~VLDl~cG~G~~sl~la~~~~-~V~gvD~s~~av~~A~~n~~~~~l~~v~~~~~D~~-~~~~~~~~~~D~Vv~ 246 (315)
T PRK03522 173 PPRSMWDLFCGVGGFGLHCATPGM-QLTGIEISAEAIACAKQSAAELGLTNVQFQALDST-QFATAQGEVPDLVLV 246 (315)
T ss_pred CCCEEEEccCCCCHHHHHHHhcCC-EEEEEeCCHHHHHHHHHHHHHcCCCceEEEEcCHH-HHHHhcCCCCeEEEE
Confidence 457999999999999999998764 89999977 3334567778999987663 222222334576654
No 31
>PRK11088 rrmA 23S rRNA methyltransferase A; Provisional
Probab=97.84 E-value=3e-05 Score=65.28 Aligned_cols=67 Identities=12% Similarity=0.049 Sum_probs=45.6
Q ss_pred CCceeEeeccCCchhHHHhHHhhh----hheeeeeccccc---ccCCCcceEEEEcccccCCCCCCCCCcceEeee
Q 035595 80 EAALDAKGNFGNGSLIADFSVVIK----MKILASLVDGEY---YNNGHENFSFLVDGEYYSNCPAVSGSQNYVILA 148 (178)
Q Consensus 80 ~~~~vLEvGCG~Gnta~pll~~~~----~~i~AtD~s~k~---~~~g~~N~~F~~~~~~~s~~p~~~~s~~~vil~ 148 (178)
...+|||+|||+|..+..|+.... ..++++|++... +.....++.|.++... .+| --.++.|+|+-+
T Consensus 85 ~~~~vLDiGcG~G~~~~~l~~~~~~~~~~~v~giD~s~~~l~~A~~~~~~~~~~~~d~~-~lp-~~~~sfD~I~~~ 158 (272)
T PRK11088 85 KATALLDIGCGEGYYTHALADALPEITTMQLFGLDISKVAIKYAAKRYPQVTFCVASSH-RLP-FADQSLDAIIRI 158 (272)
T ss_pred CCCeEEEECCcCCHHHHHHHHhcccccCCeEEEECCCHHHHHHHHHhCCCCeEEEeecc-cCC-CcCCceeEEEEe
Confidence 457899999999999998887542 257999988322 2223457888886654 343 115688888753
No 32
>PF13489 Methyltransf_23: Methyltransferase domain; PDB: 3JWJ_A 3JWH_B 2AOV_B 2AOT_A 1JQD_B 2AOX_A 1JQE_A 2AOU_B 2AOW_A 3DLI_C ....
Probab=97.81 E-value=9e-06 Score=60.38 Aligned_cols=66 Identities=14% Similarity=0.108 Sum_probs=42.9
Q ss_pred CCCceeEeeccCCchhHHHhHHhhhhheeeeecccccccCCCcceEEEEcccccCCCCCCCCCcceEeeee
Q 035595 79 HEAALDAKGNFGNGSLIADFSVVIKMKILASLVDGEYYNNGHENFSFLVDGEYYSNCPAVSGSQNYVILAN 149 (178)
Q Consensus 79 ~~~~~vLEvGCG~Gnta~pll~~~~~~i~AtD~s~k~~~~g~~N~~F~~~~~~~s~~p~~~~s~~~vil~n 149 (178)
.+..+|||||||+|.++..+..... .++++|.+...... .++.+...... .++-.+++.|+|+..+
T Consensus 21 ~~~~~vLDiGcG~G~~~~~l~~~~~-~~~g~D~~~~~~~~--~~~~~~~~~~~--~~~~~~~~fD~i~~~~ 86 (161)
T PF13489_consen 21 KPGKRVLDIGCGTGSFLRALAKRGF-EVTGVDISPQMIEK--RNVVFDNFDAQ--DPPFPDGSFDLIICND 86 (161)
T ss_dssp TTTSEEEEESSTTSHHHHHHHHTTS-EEEEEESSHHHHHH--TTSEEEEEECH--THHCHSSSEEEEEEES
T ss_pred CCCCEEEEEcCCCCHHHHHHHHhCC-EEEEEECCHHHHhh--hhhhhhhhhhh--hhhccccchhhHhhHH
Confidence 5678999999999999999966654 89999998544332 33344433211 1112256777777654
No 33
>PRK15451 tRNA cmo(5)U34 methyltransferase; Provisional
Probab=97.81 E-value=3.3e-05 Score=64.38 Aligned_cols=64 Identities=9% Similarity=-0.082 Sum_probs=43.5
Q ss_pred CCceeEeeccCCchhHHHhHHh---hhhheeeeecc--------cccccCCCc-ceEEEEcccccCCCCCCCCCcceEee
Q 035595 80 EAALDAKGNFGNGSLIADFSVV---IKMKILASLVD--------GEYYNNGHE-NFSFLVDGEYYSNCPAVSGSQNYVIL 147 (178)
Q Consensus 80 ~~~~vLEvGCG~Gnta~pll~~---~~~~i~AtD~s--------~k~~~~g~~-N~~F~~~~~~~s~~p~~~~s~~~vil 147 (178)
+..+|||||||+|..+..|+.. ...+++++|.+ ++....+.. +++|..+... .+|. ++.|++|+
T Consensus 56 ~~~~vLDlGcGtG~~~~~l~~~~~~~~~~v~gvD~S~~ml~~A~~~~~~~~~~~~v~~~~~d~~-~~~~---~~~D~vv~ 131 (247)
T PRK15451 56 PGTQVYDLGCSLGAATLSVRRNIHHDNCKIIAIDNSPAMIERCRRHIDAYKAPTPVDVIEGDIR-DIAI---ENASMVVL 131 (247)
T ss_pred CCCEEEEEcccCCHHHHHHHHhcCCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEeCChh-hCCC---CCCCEEeh
Confidence 5578999999999999998873 24589999987 233333333 6888876654 3332 34677664
No 34
>PRK01683 trans-aconitate 2-methyltransferase; Provisional
Probab=97.81 E-value=3.9e-05 Score=63.10 Aligned_cols=67 Identities=9% Similarity=-0.015 Sum_probs=46.3
Q ss_pred CCCceeEeeccCCchhHHHhHHhh-hhheeeeecccc---cccCCCcceEEEEcccccCCCCCCCCCcceEeee
Q 035595 79 HEAALDAKGNFGNGSLIADFSVVI-KMKILASLVDGE---YYNNGHENFSFLVDGEYYSNCPAVSGSQNYVILA 148 (178)
Q Consensus 79 ~~~~~vLEvGCG~Gnta~pll~~~-~~~i~AtD~s~k---~~~~g~~N~~F~~~~~~~s~~p~~~~s~~~vil~ 148 (178)
.+..+|||||||+|..+..|+... ..+++++|.+.. .+.....++.|..+... .+.+ +++.|+|+..
T Consensus 30 ~~~~~vLDiGcG~G~~~~~la~~~~~~~v~gvD~s~~~i~~a~~~~~~~~~~~~d~~-~~~~--~~~fD~v~~~ 100 (258)
T PRK01683 30 ENPRYVVDLGCGPGNSTELLVERWPAARITGIDSSPAMLAEARSRLPDCQFVEADIA-SWQP--PQALDLIFAN 100 (258)
T ss_pred cCCCEEEEEcccCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHhCCCCeEEECchh-ccCC--CCCccEEEEc
Confidence 456899999999999999999864 358999998832 22334557888776553 2221 3477777644
No 35
>PRK14121 tRNA (guanine-N(7)-)-methyltransferase; Provisional
Probab=97.80 E-value=2.6e-05 Score=71.54 Aligned_cols=67 Identities=9% Similarity=0.011 Sum_probs=51.9
Q ss_pred CCceeEeeccCCchhHHHhHHhh-hhheeeeecc--------cccccCCCcceEEEEcccccCCCCCC-CCCcceEee
Q 035595 80 EAALDAKGNFGNGSLIADFSVVI-KMKILASLVD--------GEYYNNGHENFSFLVDGEYYSNCPAV-SGSQNYVIL 147 (178)
Q Consensus 80 ~~~~vLEvGCG~Gnta~pll~~~-~~~i~AtD~s--------~k~~~~g~~N~~F~~~~~~~s~~p~~-~~s~~~vil 147 (178)
....+||||||+|..++.++... ...++|+|++ .++...|..|+.+.++.+.. +...+ ++++|.|.+
T Consensus 122 ~~p~vLEIGcGsG~~ll~lA~~~P~~~~iGIEI~~~~i~~a~~ka~~~gL~NV~~i~~DA~~-ll~~~~~~s~D~I~l 198 (390)
T PRK14121 122 QEKILIEIGFGSGRHLLYQAKNNPNKLFIGIEIHTPSIEQVLKQIELLNLKNLLIINYDARL-LLELLPSNSVEKIFV 198 (390)
T ss_pred CCCeEEEEcCcccHHHHHHHHhCCCCCEEEEECCHHHHHHHHHHHHHcCCCcEEEEECCHHH-hhhhCCCCceeEEEE
Confidence 34589999999999999999875 4578999976 55667789999999987742 21224 678888875
No 36
>PRK13944 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=97.80 E-value=5.7e-05 Score=61.44 Aligned_cols=70 Identities=10% Similarity=-0.060 Sum_probs=47.6
Q ss_pred cCCCceeEeeccCCchhHHHhHHhh--hhheeeeecc--------cccccCCCc-ceEEEEcccccCCCCCCCCCcceEe
Q 035595 78 CHEAALDAKGNFGNGSLIADFSVVI--KMKILASLVD--------GEYYNNGHE-NFSFLVDGEYYSNCPAVSGSQNYVI 146 (178)
Q Consensus 78 ~~~~~~vLEvGCG~Gnta~pll~~~--~~~i~AtD~s--------~k~~~~g~~-N~~F~~~~~~~s~~p~~~~s~~~vi 146 (178)
..+..+|||+|||+|..+..++... ..+++++|++ ++....|.. ++.|..+.....++. .++.|+++
T Consensus 70 ~~~~~~VLDiG~GsG~~~~~la~~~~~~g~V~~iD~~~~~~~~a~~~l~~~~~~~~v~~~~~d~~~~~~~--~~~fD~Ii 147 (205)
T PRK13944 70 PRPGMKILEVGTGSGYQAAVCAEAIERRGKVYTVEIVKELAIYAAQNIERLGYWGVVEVYHGDGKRGLEK--HAPFDAII 147 (205)
T ss_pred CCCCCEEEEECcCccHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEECCcccCCcc--CCCccEEE
Confidence 3466899999999999998888764 2478999977 233345554 488888655423332 35778776
Q ss_pred eee
Q 035595 147 LAN 149 (178)
Q Consensus 147 l~n 149 (178)
+..
T Consensus 148 ~~~ 150 (205)
T PRK13944 148 VTA 150 (205)
T ss_pred Ecc
Confidence 553
No 37
>PRK00274 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Reviewed
Probab=97.80 E-value=4e-05 Score=65.24 Aligned_cols=67 Identities=15% Similarity=0.130 Sum_probs=45.3
Q ss_pred CCCceeEeeccCCchhHHHhHHhhhhheeeeecccccccC-----CCcceEEEEcccccCCC-CCCCCCcceEeeeeh
Q 035595 79 HEAALDAKGNFGNGSLIADFSVVIKMKILASLVDGEYYNN-----GHENFSFLVDGEYYSNC-PAVSGSQNYVILANL 150 (178)
Q Consensus 79 ~~~~~vLEvGCG~Gnta~pll~~~~~~i~AtD~s~k~~~~-----g~~N~~F~~~~~~~s~~-p~~~~s~~~vil~nl 150 (178)
.+..+|||+|||+|..+..|+.... +++|+|++.+..+. ...++.+..++.. .++ +.+. ..+|+.||
T Consensus 41 ~~~~~VLEiG~G~G~lt~~L~~~~~-~v~avE~d~~~~~~~~~~~~~~~v~~i~~D~~-~~~~~~~~---~~~vv~Nl 113 (272)
T PRK00274 41 QPGDNVLEIGPGLGALTEPLLERAA-KVTAVEIDRDLAPILAETFAEDNLTIIEGDAL-KVDLSELQ---PLKVVANL 113 (272)
T ss_pred CCcCeEEEeCCCccHHHHHHHHhCC-cEEEEECCHHHHHHHHHhhccCceEEEEChhh-cCCHHHcC---cceEEEeC
Confidence 4567999999999999999999875 89999988222110 1157888887664 222 1111 35666776
No 38
>PRK08317 hypothetical protein; Provisional
Probab=97.79 E-value=7.3e-05 Score=58.64 Aligned_cols=72 Identities=10% Similarity=-0.003 Sum_probs=49.2
Q ss_pred ccCCCceeEeeccCCchhHHHhHHhh--hhheeeeeccccc-------ccCCCcceEEEEcccccCCCCCCCCCcceEee
Q 035595 77 NCHEAALDAKGNFGNGSLIADFSVVI--KMKILASLVDGEY-------YNNGHENFSFLVDGEYYSNCPAVSGSQNYVIL 147 (178)
Q Consensus 77 ~~~~~~~vLEvGCG~Gnta~pll~~~--~~~i~AtD~s~k~-------~~~g~~N~~F~~~~~~~s~~p~~~~s~~~vil 147 (178)
...+..+|||+|||+|..+..++... ..+++++|.+... ......++.|..+... ..+ ..++..|+|++
T Consensus 16 ~~~~~~~vLdiG~G~G~~~~~~a~~~~~~~~v~~~d~~~~~~~~a~~~~~~~~~~~~~~~~d~~-~~~-~~~~~~D~v~~ 93 (241)
T PRK08317 16 AVQPGDRVLDVGCGPGNDARELARRVGPEGRVVGIDRSEAMLALAKERAAGLGPNVEFVRGDAD-GLP-FPDGSFDAVRS 93 (241)
T ss_pred CCCCCCEEEEeCCCCCHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHhhCCCCceEEEecccc-cCC-CCCCCceEEEE
Confidence 33567899999999999999998764 3478999987321 1223457888886553 222 22578899887
Q ss_pred eeh
Q 035595 148 ANL 150 (178)
Q Consensus 148 ~nl 150 (178)
.++
T Consensus 94 ~~~ 96 (241)
T PRK08317 94 DRV 96 (241)
T ss_pred ech
Confidence 653
No 39
>PRK05785 hypothetical protein; Provisional
Probab=97.79 E-value=2.2e-05 Score=65.25 Aligned_cols=67 Identities=15% Similarity=-0.017 Sum_probs=43.2
Q ss_pred CCceeEeeccCCchhHHHhHHhhhhheeeeecccccccCCCcceEEEEcccccCCCCCCCCCcceEeee
Q 035595 80 EAALDAKGNFGNGSLIADFSVVIKMKILASLVDGEYYNNGHENFSFLVDGEYYSNCPAVSGSQNYVILA 148 (178)
Q Consensus 80 ~~~~vLEvGCG~Gnta~pll~~~~~~i~AtD~s~k~~~~g~~N~~F~~~~~~~s~~p~~~~s~~~vil~ 148 (178)
+..+|||||||||..+..|+.....+++++|.+...-+.+.....+.++... .+| --.++.|+|+..
T Consensus 51 ~~~~VLDlGcGtG~~~~~l~~~~~~~v~gvD~S~~Ml~~a~~~~~~~~~d~~-~lp-~~d~sfD~v~~~ 117 (226)
T PRK05785 51 RPKKVLDVAAGKGELSYHFKKVFKYYVVALDYAENMLKMNLVADDKVVGSFE-ALP-FRDKSFDVVMSS 117 (226)
T ss_pred CCCeEEEEcCCCCHHHHHHHHhcCCEEEEECCCHHHHHHHHhccceEEechh-hCC-CCCCCEEEEEec
Confidence 4679999999999999998876434899999884321111112234444333 332 226788888854
No 40
>PRK07402 precorrin-6B methylase; Provisional
Probab=97.77 E-value=5e-05 Score=60.69 Aligned_cols=52 Identities=13% Similarity=0.142 Sum_probs=39.4
Q ss_pred CCCceeEeeccCCchhHHHhHHhh-hhheeeeecc--------cccccCCCcceEEEEccc
Q 035595 79 HEAALDAKGNFGNGSLIADFSVVI-KMKILASLVD--------GEYYNNGHENFSFLVDGE 130 (178)
Q Consensus 79 ~~~~~vLEvGCG~Gnta~pll~~~-~~~i~AtD~s--------~k~~~~g~~N~~F~~~~~ 130 (178)
.+..+|||+|||+|..++.++... ..+++++|.+ ++....|..|+.|..+..
T Consensus 39 ~~~~~VLDiG~G~G~~~~~la~~~~~~~V~~vD~s~~~~~~a~~n~~~~~~~~v~~~~~d~ 99 (196)
T PRK07402 39 EPDSVLWDIGAGTGTIPVEAGLLCPKGRVIAIERDEEVVNLIRRNCDRFGVKNVEVIEGSA 99 (196)
T ss_pred CCCCEEEEeCCCCCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCCCCeEEEECch
Confidence 456899999999999999998653 3489999987 223345677888887654
No 41
>PRK06202 hypothetical protein; Provisional
Probab=97.74 E-value=7.3e-05 Score=61.06 Aligned_cols=68 Identities=13% Similarity=0.021 Sum_probs=43.6
Q ss_pred CCCceeEeeccCCchhHHHhHHhh-----hhheeeeeccccc----cc-CCCcceEEEEcccccCCCCCCCCCcceEeee
Q 035595 79 HEAALDAKGNFGNGSLIADFSVVI-----KMKILASLVDGEY----YN-NGHENFSFLVDGEYYSNCPAVSGSQNYVILA 148 (178)
Q Consensus 79 ~~~~~vLEvGCG~Gnta~pll~~~-----~~~i~AtD~s~k~----~~-~g~~N~~F~~~~~~~s~~p~~~~s~~~vil~ 148 (178)
.+..+|||+|||+|..+..|+... ..+++|+|.+... .. .+..++.|...... .++ .-+++.|+|+..
T Consensus 59 ~~~~~iLDlGcG~G~~~~~L~~~~~~~g~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~-~l~-~~~~~fD~V~~~ 136 (232)
T PRK06202 59 DRPLTLLDIGCGGGDLAIDLARWARRDGLRLEVTAIDPDPRAVAFARANPRRPGVTFRQAVSD-ELV-AEGERFDVVTSN 136 (232)
T ss_pred CCCcEEEEeccCCCHHHHHHHHHHHhCCCCcEEEEEcCCHHHHHHHHhccccCCCeEEEEecc-ccc-ccCCCccEEEEC
Confidence 456799999999999999888643 2379999987221 11 12234666654332 122 135788988765
No 42
>TIGR01983 UbiG ubiquinone biosynthesis O-methyltransferase. This model represents an O-methyltransferase believed to act at two points in the ubiquinone biosynthetic pathway in bacteria (UbiG) and fungi (COQ3). A separate methylase (MenG/UbiE) catalyzes the single C-methylation step. The most commonly used names for genes in this family do not indicate whether this gene is an O-methyl, or C-methyl transferase.
Probab=97.74 E-value=4.7e-05 Score=60.78 Aligned_cols=68 Identities=7% Similarity=-0.078 Sum_probs=47.2
Q ss_pred CCceeEeeccCCchhHHHhHHhhhhheeeeeccc--------ccccCCCcceEEEEcccccCCCCCCCCCcceEeeee
Q 035595 80 EAALDAKGNFGNGSLIADFSVVIKMKILASLVDG--------EYYNNGHENFSFLVDGEYYSNCPAVSGSQNYVILAN 149 (178)
Q Consensus 80 ~~~~vLEvGCG~Gnta~pll~~~~~~i~AtD~s~--------k~~~~g~~N~~F~~~~~~~s~~p~~~~s~~~vil~n 149 (178)
...+|||+|||+|..+..++.... .++++|.+. +....+..++.|..+... ..+...+++.|+|++.+
T Consensus 45 ~~~~vLdlG~G~G~~~~~l~~~~~-~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~~d~~-~~~~~~~~~~D~i~~~~ 120 (224)
T TIGR01983 45 FGLRVLDVGCGGGLLSEPLARLGA-NVTGIDASEENIEVAKLHAKKDPLLKIEYRCTSVE-DLAEKGAKSFDVVTCME 120 (224)
T ss_pred CCCeEEEECCCCCHHHHHHHhcCC-eEEEEeCCHHHHHHHHHHHHHcCCCceEEEeCCHH-HhhcCCCCCccEEEehh
Confidence 367899999999999999887654 689999773 222345556888776553 22322257889887653
No 43
>PF02390 Methyltransf_4: Putative methyltransferase ; InterPro: IPR003358 This entry represents tRNA (guanine-N-7) methyltransferase (2.1.1.33 from EC), which catalyses the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA. Capping of the pre-mRNA 5' end by addition a monomethylated guanosine cap (m(7)G) is an essential and the earliest modification in the biogenesis of mRNA []. The reaction is catalysed by three enzymes: triphosphatase, guanylyltransferase, and tRNA (guanine-N-7) methyltransferase [, ].; GO: 0008176 tRNA (guanine-N7-)-methyltransferase activity, 0006400 tRNA modification; PDB: 3DXZ_A 3DXY_A 3DXX_A 3CKK_A 3P2I_B 3P2K_D 3P2E_A 3MTE_B 3PB3_B 1YZH_B ....
Probab=97.73 E-value=2.4e-05 Score=64.25 Aligned_cols=64 Identities=14% Similarity=0.163 Sum_probs=46.1
Q ss_pred eeEeeccCCchhHHHhHHhh-hhheeeeecc--------cccccCCCcceEEEEcccccCCCCCC-CCCcceEe
Q 035595 83 LDAKGNFGNGSLIADFSVVI-KMKILASLVD--------GEYYNNGHENFSFLVDGEYYSNCPAV-SGSQNYVI 146 (178)
Q Consensus 83 ~vLEvGCG~Gnta~pll~~~-~~~i~AtD~s--------~k~~~~g~~N~~F~~~~~~~s~~p~~-~~s~~~vi 146 (178)
.+||||||.|..++-++... ...++++|++ +++...+..|+.|.++++...+.--+ ++|++-+.
T Consensus 20 l~lEIG~G~G~~l~~~A~~~Pd~n~iGiE~~~~~v~~a~~~~~~~~l~Nv~~~~~da~~~l~~~~~~~~v~~i~ 93 (195)
T PF02390_consen 20 LILEIGCGKGEFLIELAKRNPDINFIGIEIRKKRVAKALRKAEKRGLKNVRFLRGDARELLRRLFPPGSVDRIY 93 (195)
T ss_dssp EEEEET-TTSHHHHHHHHHSTTSEEEEEES-HHHHHHHHHHHHHHTTSSEEEEES-CTTHHHHHSTTTSEEEEE
T ss_pred eEEEecCCCCHHHHHHHHHCCCCCEEEEecchHHHHHHHHHHHhhcccceEEEEccHHHHHhhcccCCchheEE
Confidence 78999999999999999864 5578999966 66677799999999988753333223 46665544
No 44
>smart00650 rADc Ribosomal RNA adenine dimethylases.
Probab=97.73 E-value=7.3e-05 Score=58.57 Aligned_cols=52 Identities=12% Similarity=0.132 Sum_probs=38.7
Q ss_pred CCCceeEeeccCCchhHHHhHHhhhhheeeeeccccccc------CCCcceEEEEcccc
Q 035595 79 HEAALDAKGNFGNGSLIADFSVVIKMKILASLVDGEYYN------NGHENFSFLVDGEY 131 (178)
Q Consensus 79 ~~~~~vLEvGCG~Gnta~pll~~~~~~i~AtD~s~k~~~------~g~~N~~F~~~~~~ 131 (178)
.+..+|||+|||+|..+..++... .+++|+|++.+... .+..|+++..+...
T Consensus 12 ~~~~~vLEiG~G~G~lt~~l~~~~-~~v~~vE~~~~~~~~~~~~~~~~~~v~ii~~D~~ 69 (169)
T smart00650 12 RPGDTVLEIGPGKGALTEELLERA-ARVTAIEIDPRLAPRLREKFAAADNLTVIHGDAL 69 (169)
T ss_pred CCcCEEEEECCCccHHHHHHHhcC-CeEEEEECCHHHHHHHHHHhccCCCEEEEECchh
Confidence 355789999999999999999885 48999998732211 12457888887664
No 45
>PF05175 MTS: Methyltransferase small domain; InterPro: IPR007848 This domain is found in ribosomal RNA small subunit methyltransferase C and in other methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 1WY7_A 1DUS_A 2OZV_A 2PJD_A 1VQ1_A 1NV9_A 1SG9_C 1NV8_A 3Q87_B 3DMF_A ....
Probab=97.73 E-value=9.1e-05 Score=58.51 Aligned_cols=65 Identities=14% Similarity=0.123 Sum_probs=46.4
Q ss_pred CCceeEeeccCCchhHHHhHHhhh-hheeeeecc--------cccccCCCcceEEEEcccccCCCCCCCCCcceEee
Q 035595 80 EAALDAKGNFGNGSLIADFSVVIK-MKILASLVD--------GEYYNNGHENFSFLVDGEYYSNCPAVSGSQNYVIL 147 (178)
Q Consensus 80 ~~~~vLEvGCG~Gnta~pll~~~~-~~i~AtD~s--------~k~~~~g~~N~~F~~~~~~~s~~p~~~~s~~~vil 147 (178)
...+|||+|||+|-.++-++.... ..++++|++ .....++..++.+..++.....+ .+..|++|.
T Consensus 31 ~~~~vLDlG~G~G~i~~~la~~~~~~~v~~vDi~~~a~~~a~~n~~~n~~~~v~~~~~d~~~~~~---~~~fD~Iv~ 104 (170)
T PF05175_consen 31 KGGRVLDLGCGSGVISLALAKRGPDAKVTAVDINPDALELAKRNAERNGLENVEVVQSDLFEALP---DGKFDLIVS 104 (170)
T ss_dssp TTCEEEEETSTTSHHHHHHHHTSTCEEEEEEESBHHHHHHHHHHHHHTTCTTEEEEESSTTTTCC---TTCEEEEEE
T ss_pred cCCeEEEecCChHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHHHhcCcccccccccccccccc---ccceeEEEE
Confidence 567899999999999999998753 269999987 33455677777787766542222 466676554
No 46
>PRK13168 rumA 23S rRNA m(5)U1939 methyltransferase; Reviewed
Probab=97.72 E-value=4.2e-05 Score=69.22 Aligned_cols=68 Identities=13% Similarity=0.046 Sum_probs=48.9
Q ss_pred CCCceeEeeccCCchhHHHhHHhhhhheeeeecc--------cccccCCCcceEEEEcccccCCCC-CC-CCCcceEee
Q 035595 79 HEAALDAKGNFGNGSLIADFSVVIKMKILASLVD--------GEYYNNGHENFSFLVDGEYYSNCP-AV-SGSQNYVIL 147 (178)
Q Consensus 79 ~~~~~vLEvGCG~Gnta~pll~~~~~~i~AtD~s--------~k~~~~g~~N~~F~~~~~~~s~~p-~~-~~s~~~vil 147 (178)
.+..+|||+|||+|..+++|+.... +++|+|++ +.+...|..|+.|..+.....+.. .+ .++.|+||+
T Consensus 296 ~~~~~VLDlgcGtG~~sl~la~~~~-~V~gvD~s~~al~~A~~n~~~~~~~~v~~~~~d~~~~l~~~~~~~~~fD~Vi~ 373 (443)
T PRK13168 296 QPGDRVLDLFCGLGNFTLPLARQAA-EVVGVEGVEAMVERARENARRNGLDNVTFYHANLEEDFTDQPWALGGFDKVLL 373 (443)
T ss_pred CCCCEEEEEeccCCHHHHHHHHhCC-EEEEEeCCHHHHHHHHHHHHHcCCCceEEEEeChHHhhhhhhhhcCCCCEEEE
Confidence 4567999999999999999998874 89999977 333445778899998876422211 02 345677664
No 47
>TIGR02081 metW methionine biosynthesis protein MetW. This protein is found alongside MetX, of the enzyme that acylates homoserine as a first step toward methionine biosynthesis, in many species. It appears to act in methionine biosynthesis but is not fully characterized.
Probab=97.72 E-value=4.2e-05 Score=61.00 Aligned_cols=70 Identities=14% Similarity=0.048 Sum_probs=44.7
Q ss_pred CCceeEeeccCCchhHHHhHHhhhhheeeeecccccc-cCCCcceEEEEcccccCCCCCCCCCcceEeeee
Q 035595 80 EAALDAKGNFGNGSLIADFSVVIKMKILASLVDGEYY-NNGHENFSFLVDGEYYSNCPAVSGSQNYVILAN 149 (178)
Q Consensus 80 ~~~~vLEvGCG~Gnta~pll~~~~~~i~AtD~s~k~~-~~g~~N~~F~~~~~~~s~~p~~~~s~~~vil~n 149 (178)
+..+|||+|||+|..+..++.......+++|++...- .....++.|........+++--+++.|+|++.+
T Consensus 13 ~~~~iLDiGcG~G~~~~~l~~~~~~~~~giD~s~~~i~~a~~~~~~~~~~d~~~~l~~~~~~sfD~Vi~~~ 83 (194)
T TIGR02081 13 PGSRVLDLGCGDGELLALLRDEKQVRGYGIEIDQDGVLACVARGVNVIQGDLDEGLEAFPDKSFDYVILSQ 83 (194)
T ss_pred CCCEEEEeCCCCCHHHHHHHhccCCcEEEEeCCHHHHHHHHHcCCeEEEEEhhhcccccCCCCcCEEEEhh
Confidence 4578999999999998888765444668899873321 111235677665543223332257889888643
No 48
>PRK04266 fibrillarin; Provisional
Probab=97.72 E-value=6.6e-05 Score=63.20 Aligned_cols=69 Identities=7% Similarity=0.032 Sum_probs=48.5
Q ss_pred CCCceeEeeccCCchhHHHhHHhh-hhheeeeecccc----c--ccCCCcceEEEEcccccCC-CCCCCCCcceEee
Q 035595 79 HEAALDAKGNFGNGSLIADFSVVI-KMKILASLVDGE----Y--YNNGHENFSFLVDGEYYSN-CPAVSGSQNYVIL 147 (178)
Q Consensus 79 ~~~~~vLEvGCG~Gnta~pll~~~-~~~i~AtD~s~k----~--~~~g~~N~~F~~~~~~~s~-~p~~~~s~~~vil 147 (178)
.+..+|||+|||+|.+.+.|+..+ ...++|+|++.. . ...+..|+.+..+...... ...+++++|+++.
T Consensus 71 ~~g~~VlD~G~G~G~~~~~la~~v~~g~V~avD~~~~ml~~l~~~a~~~~nv~~i~~D~~~~~~~~~l~~~~D~i~~ 147 (226)
T PRK04266 71 KKGSKVLYLGAASGTTVSHVSDIVEEGVVYAVEFAPRPMRELLEVAEERKNIIPILADARKPERYAHVVEKVDVIYQ 147 (226)
T ss_pred CCCCEEEEEccCCCHHHHHHHHhcCCCeEEEEECCHHHHHHHHHHhhhcCCcEEEECCCCCcchhhhccccCCEEEE
Confidence 467899999999999999999876 347999998842 1 1122368888876654211 1345677998874
No 49
>PRK14968 putative methyltransferase; Provisional
Probab=97.70 E-value=8.3e-05 Score=57.21 Aligned_cols=64 Identities=8% Similarity=-0.013 Sum_probs=43.2
Q ss_pred CCceeEeeccCCchhHHHhHHhhhhheeeeeccccc--------ccCCCcc--eEEEEcccccCCCCCCCCCcceEee
Q 035595 80 EAALDAKGNFGNGSLIADFSVVIKMKILASLVDGEY--------YNNGHEN--FSFLVDGEYYSNCPAVSGSQNYVIL 147 (178)
Q Consensus 80 ~~~~vLEvGCG~Gnta~pll~~~~~~i~AtD~s~k~--------~~~g~~N--~~F~~~~~~~s~~p~~~~s~~~vil 147 (178)
+..+|||+|||+|.++..++... .+++++|++... ...+..+ +.|..+.....+ .+++.|+||.
T Consensus 23 ~~~~vLd~G~G~G~~~~~l~~~~-~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~~---~~~~~d~vi~ 96 (188)
T PRK14968 23 KGDRVLEVGTGSGIVAIVAAKNG-KKVVGVDINPYAVECAKCNAKLNNIRNNGVEVIRSDLFEPF---RGDKFDVILF 96 (188)
T ss_pred CCCEEEEEccccCHHHHHHHhhc-ceEEEEECCHHHHHHHHHHHHHcCCCCcceEEEeccccccc---cccCceEEEE
Confidence 45689999999999999999884 589999987322 2223333 677765543221 2346777764
No 50
>PRK11873 arsM arsenite S-adenosylmethyltransferase; Reviewed
Probab=97.69 E-value=9.7e-05 Score=61.53 Aligned_cols=67 Identities=13% Similarity=0.010 Sum_probs=46.9
Q ss_pred CCCceeEeeccCCchhHHHhHHhh--hhheeeeecc--------cccccCCCcceEEEEcccccCCCCCC-CCCcceEee
Q 035595 79 HEAALDAKGNFGNGSLIADFSVVI--KMKILASLVD--------GEYYNNGHENFSFLVDGEYYSNCPAV-SGSQNYVIL 147 (178)
Q Consensus 79 ~~~~~vLEvGCG~Gnta~pll~~~--~~~i~AtD~s--------~k~~~~g~~N~~F~~~~~~~s~~p~~-~~s~~~vil 147 (178)
.+..+||++|||+|..++-++... ..+++++|++ +.....|..+++|...... .++ + .++.|+|+.
T Consensus 76 ~~g~~VLDiG~G~G~~~~~~a~~~g~~~~v~gvD~s~~~l~~A~~~~~~~g~~~v~~~~~d~~-~l~--~~~~~fD~Vi~ 152 (272)
T PRK11873 76 KPGETVLDLGSGGGFDCFLAARRVGPTGKVIGVDMTPEMLAKARANARKAGYTNVEFRLGEIE-ALP--VADNSVDVIIS 152 (272)
T ss_pred CCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEECCCHHHHHHHHHHHHHcCCCCEEEEEcchh-hCC--CCCCceeEEEE
Confidence 466899999999999888776653 2368999976 2223456778898886553 333 3 468898875
Q ss_pred e
Q 035595 148 A 148 (178)
Q Consensus 148 ~ 148 (178)
.
T Consensus 153 ~ 153 (272)
T PRK11873 153 N 153 (272)
T ss_pred c
Confidence 4
No 51
>TIGR00438 rrmJ cell division protein FtsJ.
Probab=97.69 E-value=0.00011 Score=58.41 Aligned_cols=65 Identities=11% Similarity=-0.017 Sum_probs=44.3
Q ss_pred CCCceeEeeccCCchhHHHhHHhhh--hheeeeecccccccCCCcceEEEEcccccCCC------CCC-CCCcceEee
Q 035595 79 HEAALDAKGNFGNGSLIADFSVVIK--MKILASLVDGEYYNNGHENFSFLVDGEYYSNC------PAV-SGSQNYVIL 147 (178)
Q Consensus 79 ~~~~~vLEvGCG~Gnta~pll~~~~--~~i~AtD~s~k~~~~g~~N~~F~~~~~~~s~~------p~~-~~s~~~vil 147 (178)
.+..+|||+|||+|....-++.... .+++++|++... +..++.|...... ..+ ..+ .++.|+|+.
T Consensus 31 ~~g~~VLDiG~GtG~~~~~l~~~~~~~~~v~~vDis~~~---~~~~i~~~~~d~~-~~~~~~~l~~~~~~~~~D~V~~ 104 (188)
T TIGR00438 31 KPGDTVLDLGAAPGGWSQVAVEQVGGKGRVIAVDLQPMK---PIENVDFIRGDFT-DEEVLNKIRERVGDDKVDVVMS 104 (188)
T ss_pred CCCCEEEEecCCCCHHHHHHHHHhCCCceEEEEeccccc---cCCCceEEEeeCC-ChhHHHHHHHHhCCCCccEEEc
Confidence 4568999999999999888887642 369999999643 3456777765432 111 012 456888875
No 52
>PRK00216 ubiE ubiquinone/menaquinone biosynthesis methyltransferase; Reviewed
Probab=97.67 E-value=0.00015 Score=57.47 Aligned_cols=68 Identities=13% Similarity=0.097 Sum_probs=46.1
Q ss_pred CCCceeEeeccCCchhHHHhHHhh--hhheeeeeccc--------ccccCC-CcceEEEEcccccCCCCCCCCCcceEee
Q 035595 79 HEAALDAKGNFGNGSLIADFSVVI--KMKILASLVDG--------EYYNNG-HENFSFLVDGEYYSNCPAVSGSQNYVIL 147 (178)
Q Consensus 79 ~~~~~vLEvGCG~Gnta~pll~~~--~~~i~AtD~s~--------k~~~~g-~~N~~F~~~~~~~s~~p~~~~s~~~vil 147 (178)
.+..+|||+|||+|.++..++... ..+++++|.+. +....+ ..++.|...... ..+ --+++.|+|++
T Consensus 50 ~~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~-~~~-~~~~~~D~I~~ 127 (239)
T PRK00216 50 RPGDKVLDLACGTGDLAIALAKAVGKTGEVVGLDFSEGMLAVGREKLRDLGLSGNVEFVQGDAE-ALP-FPDNSFDAVTI 127 (239)
T ss_pred CCCCeEEEeCCCCCHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHhhcccccccCeEEEecccc-cCC-CCCCCccEEEE
Confidence 356899999999999999998865 35899999762 211211 245788776553 222 12567898876
Q ss_pred e
Q 035595 148 A 148 (178)
Q Consensus 148 ~ 148 (178)
.
T Consensus 128 ~ 128 (239)
T PRK00216 128 A 128 (239)
T ss_pred e
Confidence 4
No 53
>PRK00377 cbiT cobalt-precorrin-6Y C(15)-methyltransferase; Provisional
Probab=97.66 E-value=8.6e-05 Score=59.69 Aligned_cols=68 Identities=13% Similarity=0.137 Sum_probs=48.0
Q ss_pred CCCceeEeeccCCchhHHHhHHhh--hhheeeeeccc--------ccccCC-CcceEEEEcccccCCCCCCCCCcceEee
Q 035595 79 HEAALDAKGNFGNGSLIADFSVVI--KMKILASLVDG--------EYYNNG-HENFSFLVDGEYYSNCPAVSGSQNYVIL 147 (178)
Q Consensus 79 ~~~~~vLEvGCG~Gnta~pll~~~--~~~i~AtD~s~--------k~~~~g-~~N~~F~~~~~~~s~~p~~~~s~~~vil 147 (178)
.+..+|||+|||+|..++.++... ..+++++|++. +....| ..|+.|...... ...+.+.+..|.|++
T Consensus 39 ~~~~~vlDlG~GtG~~s~~~a~~~~~~~~v~avD~~~~~~~~a~~n~~~~g~~~~v~~~~~d~~-~~l~~~~~~~D~V~~ 117 (198)
T PRK00377 39 RKGDMILDIGCGTGSVTVEASLLVGETGKVYAVDKDEKAINLTRRNAEKFGVLNNIVLIKGEAP-EILFTINEKFDRIFI 117 (198)
T ss_pred CCcCEEEEeCCcCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHhCCCCCeEEEEechh-hhHhhcCCCCCEEEE
Confidence 466899999999999999987653 34899999872 222345 467888775543 223445567898887
No 54
>cd02440 AdoMet_MTases S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy). There are at least five structurally distinct families of AdoMet-MTases, class I being the largest and most diverse. Within this class enzymes can be classified by different substrate specificities (small molecules, lipids, nucleic acids, etc.) and different target atoms for methylation (nitrogen, oxygen, carbon, sulfur, etc.).
Probab=97.65 E-value=9e-05 Score=48.62 Aligned_cols=67 Identities=12% Similarity=-0.018 Sum_probs=45.4
Q ss_pred eeEeeccCCchhHHHhHHhhhhheeeeeccccc--------ccCCCcceEEEEcccccCCCCCCCCCcceEeeeeh
Q 035595 83 LDAKGNFGNGSLIADFSVVIKMKILASLVDGEY--------YNNGHENFSFLVDGEYYSNCPAVSGSQNYVILANL 150 (178)
Q Consensus 83 ~vLEvGCG~Gnta~pll~~~~~~i~AtD~s~k~--------~~~g~~N~~F~~~~~~~s~~p~~~~s~~~vil~nl 150 (178)
+|||+|||+|.....++.....+++++|.+... ...+..++.|...+.... ..-..++.|++++.+.
T Consensus 1 ~ildig~G~G~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~d~i~~~~~ 75 (107)
T cd02440 1 RVLDLGCGTGALALALASGPGARVTGVDISPVALELARKAAAALLADNVEVLKGDAEEL-PPEADESFDVIISDPP 75 (107)
T ss_pred CeEEEcCCccHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHhcccccceEEEEcChhhh-ccccCCceEEEEEccc
Confidence 489999999999999998444589999977322 234556788877555322 2212567888777654
No 55
>TIGR00479 rumA 23S rRNA (uracil-5-)-methyltransferase RumA. This protein family was first proposed to be RNA methyltransferases by homology to the TrmA family. The member from E. coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA.
Probab=97.63 E-value=4.1e-05 Score=68.54 Aligned_cols=67 Identities=16% Similarity=0.108 Sum_probs=49.0
Q ss_pred CCCceeEeeccCCchhHHHhHHhhhhheeeeecc--------cccccCCCcceEEEEcccccCCCCCC---CCCcceEee
Q 035595 79 HEAALDAKGNFGNGSLIADFSVVIKMKILASLVD--------GEYYNNGHENFSFLVDGEYYSNCPAV---SGSQNYVIL 147 (178)
Q Consensus 79 ~~~~~vLEvGCG~Gnta~pll~~~~~~i~AtD~s--------~k~~~~g~~N~~F~~~~~~~s~~p~~---~~s~~~vil 147 (178)
.+..+|||+|||+|+.+++|+...+ +++|+|++ +.+...|+.|+.|..+....-++ .+ .++.|+||+
T Consensus 291 ~~~~~vLDl~cG~G~~sl~la~~~~-~V~~vE~~~~av~~a~~n~~~~~~~nv~~~~~d~~~~l~-~~~~~~~~~D~vi~ 368 (431)
T TIGR00479 291 QGEELVVDAYCGVGTFTLPLAKQAK-SVVGIEVVPESVEKAQQNAELNGIANVEFLAGTLETVLP-KQPWAGQIPDVLLL 368 (431)
T ss_pred CCCCEEEEcCCCcCHHHHHHHHhCC-EEEEEEcCHHHHHHHHHHHHHhCCCceEEEeCCHHHHHH-HHHhcCCCCCEEEE
Confidence 3557999999999999999998875 89999976 33445678899999977642222 22 235677664
No 56
>PRK10258 biotin biosynthesis protein BioC; Provisional
Probab=97.61 E-value=8.5e-05 Score=61.06 Aligned_cols=65 Identities=8% Similarity=-0.073 Sum_probs=41.9
Q ss_pred CCceeEeeccCCchhHHHhHHhhhhheeeeeccccc---ccCCCcceEEEEcccccCCCCCCCCCcceEee
Q 035595 80 EAALDAKGNFGNGSLIADFSVVIKMKILASLVDGEY---YNNGHENFSFLVDGEYYSNCPAVSGSQNYVIL 147 (178)
Q Consensus 80 ~~~~vLEvGCG~Gnta~pll~~~~~~i~AtD~s~k~---~~~g~~N~~F~~~~~~~s~~p~~~~s~~~vil 147 (178)
+..+|||+|||+|..+..|.... ..++++|++... +........|..+... .+| --.++.|+|+.
T Consensus 42 ~~~~vLDiGcG~G~~~~~l~~~~-~~v~~~D~s~~~l~~a~~~~~~~~~~~~d~~-~~~-~~~~~fD~V~s 109 (251)
T PRK10258 42 KFTHVLDAGCGPGWMSRYWRERG-SQVTALDLSPPMLAQARQKDAADHYLAGDIE-SLP-LATATFDLAWS 109 (251)
T ss_pred CCCeEEEeeCCCCHHHHHHHHcC-CeEEEEECCHHHHHHHHhhCCCCCEEEcCcc-cCc-CCCCcEEEEEE
Confidence 46789999999999888887654 489999988322 1111223456655443 333 11467888764
No 57
>PRK14896 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Provisional
Probab=97.61 E-value=0.00013 Score=61.47 Aligned_cols=65 Identities=14% Similarity=0.137 Sum_probs=44.9
Q ss_pred CCccccc---ccc---cccCCCceeEeeccCCchhHHHhHHhhhhheeeeecccccc------cCCCcceEEEEcccc
Q 035595 66 GKFFKFT---AEL---SNCHEAALDAKGNFGNGSLIADFSVVIKMKILASLVDGEYY------NNGHENFSFLVDGEY 131 (178)
Q Consensus 66 ~~FFKdR---PEL---~~~~~~~~vLEvGCG~Gnta~pll~~~~~~i~AtD~s~k~~------~~g~~N~~F~~~~~~ 131 (178)
.||-.|+ ..+ +...+..+|||||||+|.....|+.... +++++|++.+.. .....|+.+..++..
T Consensus 9 Qnfl~d~~~~~~iv~~~~~~~~~~VLEIG~G~G~lt~~L~~~~~-~v~~vEid~~~~~~l~~~~~~~~~v~ii~~D~~ 85 (258)
T PRK14896 9 QHFLIDDRVVDRIVEYAEDTDGDPVLEIGPGKGALTDELAKRAK-KVYAIELDPRLAEFLRDDEIAAGNVEIIEGDAL 85 (258)
T ss_pred ccccCCHHHHHHHHHhcCCCCcCeEEEEeCccCHHHHHHHHhCC-EEEEEECCHHHHHHHHHHhccCCCEEEEEeccc
Confidence 3576776 222 2234568999999999999999999864 899999872211 112457888886664
No 58
>TIGR00755 ksgA dimethyladenosine transferase. Alternate name: S-adenosylmethionine--6-N',N'-adenosyl (rRNA) dimethyltransferase
Probab=97.59 E-value=0.00012 Score=61.12 Aligned_cols=69 Identities=16% Similarity=0.090 Sum_probs=46.0
Q ss_pred CCCceeEeeccCCchhHHHhHHhhhhheeeeecccccc------cCCCcceEEEEcccccCCCCC-CCCCcceEeeeehh
Q 035595 79 HEAALDAKGNFGNGSLIADFSVVIKMKILASLVDGEYY------NNGHENFSFLVDGEYYSNCPA-VSGSQNYVILANLK 151 (178)
Q Consensus 79 ~~~~~vLEvGCG~Gnta~pll~~~~~~i~AtD~s~k~~------~~g~~N~~F~~~~~~~s~~p~-~~~s~~~vil~nl~ 151 (178)
.+..+|||+|||+|.....|+.... .++++|.+.... .....|+.+..+... ..+.. .. .+++|+.||-
T Consensus 28 ~~~~~VLEiG~G~G~lt~~L~~~~~-~v~~iE~d~~~~~~l~~~~~~~~~v~v~~~D~~-~~~~~~~d--~~~~vvsNlP 103 (253)
T TIGR00755 28 LEGDVVLEIGPGLGALTEPLLKRAK-KVTAIEIDPRLAEILRKLLSLYERLEVIEGDAL-KVDLPDFP--KQLKVVSNLP 103 (253)
T ss_pred CCcCEEEEeCCCCCHHHHHHHHhCC-cEEEEECCHHHHHHHHHHhCcCCcEEEEECchh-cCChhHcC--CcceEEEcCC
Confidence 4568999999999999999998875 799999772221 111457777776664 22221 11 1267788874
No 59
>PTZ00338 dimethyladenosine transferase-like protein; Provisional
Probab=97.59 E-value=9.4e-05 Score=64.70 Aligned_cols=65 Identities=15% Similarity=0.190 Sum_probs=45.4
Q ss_pred CCccccc---c---cccccCCCceeEeeccCCchhHHHhHHhhhhheeeeecccc--------cccCC-CcceEEEEccc
Q 035595 66 GKFFKFT---A---ELSNCHEAALDAKGNFGNGSLIADFSVVIKMKILASLVDGE--------YYNNG-HENFSFLVDGE 130 (178)
Q Consensus 66 ~~FFKdR---P---EL~~~~~~~~vLEvGCG~Gnta~pll~~~~~~i~AtD~s~k--------~~~~g-~~N~~F~~~~~ 130 (178)
.||..|. . +.....+..+|||||||+|.....|+.... +++|+|++.+ ....+ ..|+++..++.
T Consensus 16 QnFL~d~~i~~~Iv~~~~~~~~~~VLEIG~G~G~LT~~Ll~~~~-~V~avEiD~~li~~l~~~~~~~~~~~~v~ii~~Da 94 (294)
T PTZ00338 16 QHILKNPLVLDKIVEKAAIKPTDTVLEIGPGTGNLTEKLLQLAK-KVIAIEIDPRMVAELKKRFQNSPLASKLEVIEGDA 94 (294)
T ss_pred ccccCCHHHHHHHHHhcCCCCcCEEEEecCchHHHHHHHHHhCC-cEEEEECCHHHHHHHHHHHHhcCCCCcEEEEECCH
Confidence 3566665 1 222334678999999999999999998764 8999998732 22223 46788888766
Q ss_pred c
Q 035595 131 Y 131 (178)
Q Consensus 131 ~ 131 (178)
.
T Consensus 95 l 95 (294)
T PTZ00338 95 L 95 (294)
T ss_pred h
Confidence 3
No 60
>TIGR03534 RF_mod_PrmC protein-(glutamine-N5) methyltransferase, release factor-specific. Members of this protein family are HemK (PrmC), a protein once thought to be involved in heme biosynthesis but now recognized to be a protein-glutamine methyltransferase that modifies the peptide chain release factors. All members of the seed alignment are encoded next to the release factor 1 gene (prfA) and confirmed by phylogenetic analysis. SIMBAL analysis (manuscript in prep.) shows the motif [LIV]PRx[DE]TE (in Escherichia coli, IPRPDTE) confers specificity for the release factors rather than for ribosomal protein L3.
Probab=97.58 E-value=0.00012 Score=59.02 Aligned_cols=64 Identities=13% Similarity=0.125 Sum_probs=46.1
Q ss_pred CceeEeeccCCchhHHHhHHhh-hhheeeeeccc--------ccccCCCcceEEEEcccccCCCCCCCCCcceEee
Q 035595 81 AALDAKGNFGNGSLIADFSVVI-KMKILASLVDG--------EYYNNGHENFSFLVDGEYYSNCPAVSGSQNYVIL 147 (178)
Q Consensus 81 ~~~vLEvGCG~Gnta~pll~~~-~~~i~AtD~s~--------k~~~~g~~N~~F~~~~~~~s~~p~~~~s~~~vil 147 (178)
..+|||+|||+|..+..++... ...++++|++. .....+..|+.|..+.....++ .++.|+||.
T Consensus 88 ~~~ilDig~G~G~~~~~l~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~~---~~~fD~Vi~ 160 (251)
T TIGR03534 88 PLRVLDLGTGSGAIALALAKERPDARVTAVDISPEALAVARKNAARLGLDNVTFLQSDWFEPLP---GGKFDLIVS 160 (251)
T ss_pred CCeEEEEeCcHhHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCCeEEEEECchhccCc---CCceeEEEE
Confidence 4589999999999999999864 34889999772 2234566678888876642221 467787764
No 61
>PRK15068 tRNA mo(5)U34 methyltransferase; Provisional
Probab=97.57 E-value=0.00012 Score=64.24 Aligned_cols=67 Identities=10% Similarity=-0.075 Sum_probs=47.8
Q ss_pred CCceeEeeccCCchhHHHhHHhhhhheeeeecccc------cccC--C-CcceEEEEcccccCCCCCCCCCcceEeeee
Q 035595 80 EAALDAKGNFGNGSLIADFSVVIKMKILASLVDGE------YYNN--G-HENFSFLVDGEYYSNCPAVSGSQNYVILAN 149 (178)
Q Consensus 80 ~~~~vLEvGCG~Gnta~pll~~~~~~i~AtD~s~k------~~~~--g-~~N~~F~~~~~~~s~~p~~~~s~~~vil~n 149 (178)
...+|||||||+|..++.++......++++|.+.. +... + ..++.|...+.. .+|. +++.|+|+..+
T Consensus 122 ~g~~VLDIGCG~G~~~~~la~~g~~~V~GiD~S~~~l~q~~a~~~~~~~~~~i~~~~~d~e-~lp~--~~~FD~V~s~~ 197 (322)
T PRK15068 122 KGRTVLDVGCGNGYHMWRMLGAGAKLVVGIDPSQLFLCQFEAVRKLLGNDQRAHLLPLGIE-QLPA--LKAFDTVFSMG 197 (322)
T ss_pred CCCEEEEeccCCcHHHHHHHHcCCCEEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEeCCHH-HCCC--cCCcCEEEECC
Confidence 45799999999999999999875446999997732 1111 1 347888886654 4544 67889988654
No 62
>PLN02396 hexaprenyldihydroxybenzoate methyltransferase
Probab=97.56 E-value=9.2e-05 Score=65.67 Aligned_cols=67 Identities=9% Similarity=-0.026 Sum_probs=47.1
Q ss_pred CCceeEeeccCCchhHHHhHHhhhhheeeeeccccc--------ccCC-CcceEEEEcccccCCCCCCCCCcceEeeee
Q 035595 80 EAALDAKGNFGNGSLIADFSVVIKMKILASLVDGEY--------YNNG-HENFSFLVDGEYYSNCPAVSGSQNYVILAN 149 (178)
Q Consensus 80 ~~~~vLEvGCG~Gnta~pll~~~~~~i~AtD~s~k~--------~~~g-~~N~~F~~~~~~~s~~p~~~~s~~~vil~n 149 (178)
+..+|||||||+|..+.+|+... ..++++|.+.+. ...+ ..++.|..+... .++. -.++.|+|+..+
T Consensus 131 ~g~~ILDIGCG~G~~s~~La~~g-~~V~GID~s~~~i~~Ar~~~~~~~~~~~i~~~~~dae-~l~~-~~~~FD~Vi~~~ 206 (322)
T PLN02396 131 EGLKFIDIGCGGGLLSEPLARMG-ATVTGVDAVDKNVKIARLHADMDPVTSTIEYLCTTAE-KLAD-EGRKFDAVLSLE 206 (322)
T ss_pred CCCEEEEeeCCCCHHHHHHHHcC-CEEEEEeCCHHHHHHHHHHHHhcCcccceeEEecCHH-Hhhh-ccCCCCEEEEhh
Confidence 45689999999999999998754 489999987221 1112 247888886654 3432 257899998765
No 63
>PRK11188 rrmJ 23S rRNA methyltransferase J; Provisional
Probab=97.55 E-value=0.00018 Score=59.26 Aligned_cols=65 Identities=11% Similarity=-0.034 Sum_probs=45.5
Q ss_pred CCCceeEeeccCCchhHHHhHHhh--hhheeeeecccccccCCCcceEEEEcccccCCC-------CCCCCCcceEee
Q 035595 79 HEAALDAKGNFGNGSLIADFSVVI--KMKILASLVDGEYYNNGHENFSFLVDGEYYSNC-------PAVSGSQNYVIL 147 (178)
Q Consensus 79 ~~~~~vLEvGCG~Gnta~pll~~~--~~~i~AtD~s~k~~~~g~~N~~F~~~~~~~s~~-------p~~~~s~~~vil 147 (178)
.+..+|||+|||+|.....++... ...++|+|++.- .+..++.|.++... ... +--++++|+|+-
T Consensus 50 ~~~~~VLDlG~GtG~~t~~l~~~~~~~~~V~aVDi~~~---~~~~~v~~i~~D~~-~~~~~~~i~~~~~~~~~D~V~S 123 (209)
T PRK11188 50 KPGMTVVDLGAAPGGWSQYAVTQIGDKGRVIACDILPM---DPIVGVDFLQGDFR-DELVLKALLERVGDSKVQVVMS 123 (209)
T ss_pred CCCCEEEEEcccCCHHHHHHHHHcCCCceEEEEecccc---cCCCCcEEEecCCC-ChHHHHHHHHHhCCCCCCEEec
Confidence 356789999999999999999875 247999999852 23456777776543 111 112577888774
No 64
>TIGR02072 BioC biotin biosynthesis protein BioC. This enzyme, which is found in biotin biosynthetic gene clusters in proteobacteria, firmicutes, green-sulfur bacteria, fusobacterium and bacteroides, is believed to carry out an enzymatic step prior to the formation of pimeloyl-CoA (although attribution of this annotation is not traceable). The enzyme appears related to methyltransferases by homology.
Probab=97.55 E-value=0.00016 Score=57.09 Aligned_cols=67 Identities=13% Similarity=0.066 Sum_probs=44.4
Q ss_pred CceeEeeccCCchhHHHhHHhh-hhheeeeeccccc----ccCCCcceEEEEcccccCCCCCCCCCcceEeeee
Q 035595 81 AALDAKGNFGNGSLIADFSVVI-KMKILASLVDGEY----YNNGHENFSFLVDGEYYSNCPAVSGSQNYVILAN 149 (178)
Q Consensus 81 ~~~vLEvGCG~Gnta~pll~~~-~~~i~AtD~s~k~----~~~g~~N~~F~~~~~~~s~~p~~~~s~~~vil~n 149 (178)
+.+|||+|||+|.....++... ..+++++|.+... ......|+.|..+... ..+ --+++.|+||..+
T Consensus 35 ~~~vLDlG~G~G~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~d~~-~~~-~~~~~fD~vi~~~ 106 (240)
T TIGR02072 35 PASVLDIGCGTGYLTRALLKRFPQAEFIALDISAGMLAQAKTKLSENVQFICGDAE-KLP-LEDSSFDLIVSNL 106 (240)
T ss_pred CCeEEEECCCccHHHHHHHHhCCCCcEEEEeChHHHHHHHHHhcCCCCeEEecchh-hCC-CCCCceeEEEEhh
Confidence 4789999999999999888764 3467999987221 1111136788775543 222 1256789988653
No 65
>PLN02336 phosphoethanolamine N-methyltransferase
Probab=97.54 E-value=0.00017 Score=64.92 Aligned_cols=69 Identities=13% Similarity=0.093 Sum_probs=47.8
Q ss_pred CCceeEeeccCCchhHHHhHHhhhhheeeeeccccc------ccCCCcceEEEEcccccCCCCCCCCCcceEeeee
Q 035595 80 EAALDAKGNFGNGSLIADFSVVIKMKILASLVDGEY------YNNGHENFSFLVDGEYYSNCPAVSGSQNYVILAN 149 (178)
Q Consensus 80 ~~~~vLEvGCG~Gnta~pll~~~~~~i~AtD~s~k~------~~~g~~N~~F~~~~~~~s~~p~~~~s~~~vil~n 149 (178)
+..+|||||||+|..+..|+.... +++++|.+.+. ......|+.|..........|--.++.|+|+...
T Consensus 37 ~~~~vLDlGcG~G~~~~~la~~~~-~v~giD~s~~~l~~a~~~~~~~~~i~~~~~d~~~~~~~~~~~~fD~I~~~~ 111 (475)
T PLN02336 37 EGKSVLELGAGIGRFTGELAKKAG-QVIALDFIESVIKKNESINGHYKNVKFMCADVTSPDLNISDGSVDLIFSNW 111 (475)
T ss_pred CCCEEEEeCCCcCHHHHHHHhhCC-EEEEEeCCHHHHHHHHHHhccCCceEEEEecccccccCCCCCCEEEEehhh
Confidence 456899999999999999998765 89999977322 2223467888886653111111146889888754
No 66
>PTZ00098 phosphoethanolamine N-methyltransferase; Provisional
Probab=97.53 E-value=0.0002 Score=60.74 Aligned_cols=69 Identities=7% Similarity=-0.021 Sum_probs=47.1
Q ss_pred CCCceeEeeccCCchhHHHhHHhhhhheeeeeccccc----c--cCCCcceEEEEcccccCCCCCCCCCcceEeeee
Q 035595 79 HEAALDAKGNFGNGSLIADFSVVIKMKILASLVDGEY----Y--NNGHENFSFLVDGEYYSNCPAVSGSQNYVILAN 149 (178)
Q Consensus 79 ~~~~~vLEvGCG~Gnta~pll~~~~~~i~AtD~s~k~----~--~~g~~N~~F~~~~~~~s~~p~~~~s~~~vil~n 149 (178)
.+..+|||||||+|..+..|+.....+++++|++... . .....++.|...... ..| --+++.|+|+..+
T Consensus 51 ~~~~~VLDiGcG~G~~a~~la~~~~~~v~giD~s~~~~~~a~~~~~~~~~i~~~~~D~~-~~~-~~~~~FD~V~s~~ 125 (263)
T PTZ00098 51 NENSKVLDIGSGLGGGCKYINEKYGAHVHGVDICEKMVNIAKLRNSDKNKIEFEANDIL-KKD-FPENTFDMIYSRD 125 (263)
T ss_pred CCCCEEEEEcCCCChhhHHHHhhcCCEEEEEECCHHHHHHHHHHcCcCCceEEEECCcc-cCC-CCCCCeEEEEEhh
Confidence 4678999999999999999987654589999987211 1 112346888876553 221 1146889988743
No 67
>smart00828 PKS_MT Methyltransferase in polyketide synthase (PKS) enzymes.
Probab=97.53 E-value=0.00016 Score=57.99 Aligned_cols=65 Identities=9% Similarity=0.050 Sum_probs=43.9
Q ss_pred ceeEeeccCCchhHHHhHHhh-hhheeeeeccc--------ccccCCCc-ceEEEEcccccCCCCCCCCCcceEeeee
Q 035595 82 ALDAKGNFGNGSLIADFSVVI-KMKILASLVDG--------EYYNNGHE-NFSFLVDGEYYSNCPAVSGSQNYVILAN 149 (178)
Q Consensus 82 ~~vLEvGCG~Gnta~pll~~~-~~~i~AtD~s~--------k~~~~g~~-N~~F~~~~~~~s~~p~~~~s~~~vil~n 149 (178)
.+|||||||+|..+..++... ...++++|++. +....|.. ++.|...... ..| ++++.|+|+..+
T Consensus 1 ~~vLDiGcG~G~~~~~la~~~~~~~v~gid~s~~~~~~a~~~~~~~gl~~~i~~~~~d~~-~~~--~~~~fD~I~~~~ 75 (224)
T smart00828 1 KRVLDFGCGYGSDLIDLAERHPHLQLHGYTISPEQAEVGRERIRALGLQGRIRIFYRDSA-KDP--FPDTYDLVFGFE 75 (224)
T ss_pred CeEEEECCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHhcCCCcceEEEecccc-cCC--CCCCCCEeehHH
Confidence 369999999999999998764 34788999772 22233333 4777775542 122 256899988654
No 68
>TIGR00537 hemK_rel_arch HemK-related putative methylase. The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. This model represents an archaeal and eukaryotic protein family that lacks an N-terminal domain found in HemK and its eubacterial homologs. It is found in a single copy in the first six completed archaeal and eukaryotic genomes.
Probab=97.52 E-value=0.00018 Score=56.58 Aligned_cols=62 Identities=13% Similarity=0.092 Sum_probs=42.7
Q ss_pred CCceeEeeccCCchhHHHhHHhhhhheeeeecccc--------cccCCCcceEEEEcccccCCCCCCCCCcceEee
Q 035595 80 EAALDAKGNFGNGSLIADFSVVIKMKILASLVDGE--------YYNNGHENFSFLVDGEYYSNCPAVSGSQNYVIL 147 (178)
Q Consensus 80 ~~~~vLEvGCG~Gnta~pll~~~~~~i~AtD~s~k--------~~~~g~~N~~F~~~~~~~s~~p~~~~s~~~vil 147 (178)
+..+|||+|||+|..++.++.... +++++|.+.. ....+. ++.|..+.... .+.++.|+|+.
T Consensus 19 ~~~~vLdlG~G~G~~~~~l~~~~~-~v~~vD~s~~~~~~a~~~~~~~~~-~~~~~~~d~~~----~~~~~fD~Vi~ 88 (179)
T TIGR00537 19 KPDDVLEIGAGTGLVAIRLKGKGK-CILTTDINPFAVKELRENAKLNNV-GLDVVMTDLFK----GVRGKFDVILF 88 (179)
T ss_pred CCCeEEEeCCChhHHHHHHHhcCC-EEEEEECCHHHHHHHHHHHHHcCC-ceEEEEccccc----ccCCcccEEEE
Confidence 346899999999999999998765 8999997722 222333 46776655431 22457787764
No 69
>TIGR02085 meth_trns_rumB 23S rRNA (uracil-5-)-methyltransferase RumB. This family consists of RNA methyltransferases designated RumB, formerly YbjF. Members act on 23S rRNA U747 and the equivalent position in other proteobacterial species. This family is homologous to the other 23S rRNA methyltransferase RumA and to the tRNA methyltransferase TrmA.
Probab=97.52 E-value=8.9e-05 Score=66.08 Aligned_cols=51 Identities=12% Similarity=-0.041 Sum_probs=40.7
Q ss_pred CCceeEeeccCCchhHHHhHHhhhhheeeeecc--------cccccCCCcceEEEEcccc
Q 035595 80 EAALDAKGNFGNGSLIADFSVVIKMKILASLVD--------GEYYNNGHENFSFLVDGEY 131 (178)
Q Consensus 80 ~~~~vLEvGCG~Gnta~pll~~~~~~i~AtD~s--------~k~~~~g~~N~~F~~~~~~ 131 (178)
+..+|||+|||+|+.+++++... ..++++|++ +.+...|..|++|..+...
T Consensus 233 ~~~~vLDL~cG~G~~~l~la~~~-~~v~~vE~~~~av~~a~~N~~~~~~~~~~~~~~d~~ 291 (374)
T TIGR02085 233 PVTQMWDLFCGVGGFGLHCAGPD-TQLTGIEIESEAIACAQQSAQMLGLDNLSFAALDSA 291 (374)
T ss_pred CCCEEEEccCCccHHHHHHhhcC-CeEEEEECCHHHHHHHHHHHHHcCCCcEEEEECCHH
Confidence 34689999999999999999766 489999977 3334567778999887764
No 70
>PRK14902 16S rRNA methyltransferase B; Provisional
Probab=97.51 E-value=0.00019 Score=64.90 Aligned_cols=69 Identities=7% Similarity=-0.013 Sum_probs=50.0
Q ss_pred cCCCceeEeeccCCchhHHHhHHhh--hhheeeeecc--------cccccCCCcceEEEEcccccCCCCCCCCCcceEee
Q 035595 78 CHEAALDAKGNFGNGSLIADFSVVI--KMKILASLVD--------GEYYNNGHENFSFLVDGEYYSNCPAVSGSQNYVIL 147 (178)
Q Consensus 78 ~~~~~~vLEvGCG~Gnta~pll~~~--~~~i~AtD~s--------~k~~~~g~~N~~F~~~~~~~s~~p~~~~s~~~vil 147 (178)
..+..+|||+|||+|..++.++... ..+++|+|++ +.....|+.|+.|..++.. .+++.++++.|+|++
T Consensus 248 ~~~g~~VLDlgaG~G~~t~~la~~~~~~~~v~avDi~~~~l~~~~~n~~~~g~~~v~~~~~D~~-~~~~~~~~~fD~Vl~ 326 (444)
T PRK14902 248 PKGGDTVLDACAAPGGKTTHIAELLKNTGKVVALDIHEHKLKLIEENAKRLGLTNIETKALDAR-KVHEKFAEKFDKILV 326 (444)
T ss_pred CCCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEeCCcc-cccchhcccCCEEEE
Confidence 3456799999999999999999864 4589999987 2334567788888887654 233334466777654
No 71
>PLN02585 magnesium protoporphyrin IX methyltransferase
Probab=97.51 E-value=0.00016 Score=63.98 Aligned_cols=63 Identities=16% Similarity=0.082 Sum_probs=43.6
Q ss_pred CCceeEeeccCCchhHHHhHHhhhhheeeeeccc--------ccccC-----CCcceEEEEcccccCCCCCCCCCcceEe
Q 035595 80 EAALDAKGNFGNGSLIADFSVVIKMKILASLVDG--------EYYNN-----GHENFSFLVDGEYYSNCPAVSGSQNYVI 146 (178)
Q Consensus 80 ~~~~vLEvGCG~Gnta~pll~~~~~~i~AtD~s~--------k~~~~-----g~~N~~F~~~~~~~s~~p~~~~s~~~vi 146 (178)
+..+|||||||+|..++.|+... ..++++|++. ++... +..++.|...... .+.++.|+|+
T Consensus 144 ~~~~VLDlGcGtG~~a~~la~~g-~~V~gvD~S~~ml~~A~~~~~~~~~~~~~~~~~~f~~~Dl~-----~l~~~fD~Vv 217 (315)
T PLN02585 144 AGVTVCDAGCGTGSLAIPLALEG-AIVSASDISAAMVAEAERRAKEALAALPPEVLPKFEANDLE-----SLSGKYDTVT 217 (315)
T ss_pred CCCEEEEecCCCCHHHHHHHHCC-CEEEEEECCHHHHHHHHHHHHhcccccccccceEEEEcchh-----hcCCCcCEEE
Confidence 45799999999999999999875 4899999882 22221 2346778765432 2356778776
Q ss_pred ee
Q 035595 147 LA 148 (178)
Q Consensus 147 l~ 148 (178)
+.
T Consensus 218 ~~ 219 (315)
T PLN02585 218 CL 219 (315)
T ss_pred Ec
Confidence 43
No 72
>PRK06922 hypothetical protein; Provisional
Probab=97.50 E-value=0.0001 Score=71.92 Aligned_cols=93 Identities=10% Similarity=0.130 Sum_probs=59.3
Q ss_pred HHHHHHHhhcC-CCCccccc------c-------cccccCCCceeEeeccCCchhHHHhHHhh-hhheeeeecccc----
Q 035595 54 DAWKRFHSRHS-SGKFFKFT------A-------ELSNCHEAALDAKGNFGNGSLIADFSVVI-KMKILASLVDGE---- 114 (178)
Q Consensus 54 ~~Wd~Fy~rh~-~~~FFKdR------P-------EL~~~~~~~~vLEvGCG~Gnta~pll~~~-~~~i~AtD~s~k---- 114 (178)
..||-|.++.. -++|.+.. + ++..-.+..+|||+|||+|.++..|+... ...++|+|++..
T Consensus 378 ~~fd~fg~r~D~~dRf~~~~~yle~m~~~~~~k~~i~d~~~g~rVLDIGCGTG~ls~~LA~~~P~~kVtGIDIS~~MLe~ 457 (677)
T PRK06922 378 LLFDFFGLRKDAYDRFHNEEVYLEHMNSSADDKRIILDYIKGDTIVDVGAGGGVMLDMIEEETEDKRIYGIDISENVIDT 457 (677)
T ss_pred HHHHHhccChhhHhHHHhHHHHHHhccccHHHHHHHhhhcCCCEEEEeCCCCCHHHHHHHHhCCCCEEEEEECCHHHHHH
Confidence 56777666532 34666433 1 12222356899999999999988888753 458999998832
Q ss_pred ----cccCCCcceEEEEcccccCCCCCC-CCCcceEeee
Q 035595 115 ----YYNNGHENFSFLVDGEYYSNCPAV-SGSQNYVILA 148 (178)
Q Consensus 115 ----~~~~g~~N~~F~~~~~~~s~~p~~-~~s~~~vil~ 148 (178)
....+ .++.+.++... .+|..+ +++.|+|+..
T Consensus 458 Ararl~~~g-~~ie~I~gDa~-dLp~~fedeSFDvVVsn 494 (677)
T PRK06922 458 LKKKKQNEG-RSWNVIKGDAI-NLSSSFEKESVDTIVYS 494 (677)
T ss_pred HHHHhhhcC-CCeEEEEcchH-hCccccCCCCEEEEEEc
Confidence 11222 35777776654 454345 6789999854
No 73
>PRK13255 thiopurine S-methyltransferase; Reviewed
Probab=97.49 E-value=0.00015 Score=60.61 Aligned_cols=61 Identities=11% Similarity=0.038 Sum_probs=42.2
Q ss_pred chHHHHHHHhhcCCCCccccc--ccccc------cCCCceeEeeccCCchhHHHhHHhhhhheeeeecccc
Q 035595 52 DSDAWKRFHSRHSSGKFFKFT--AELSN------CHEAALDAKGNFGNGSLIADFSVVIKMKILASLVDGE 114 (178)
Q Consensus 52 ~~~~Wd~Fy~rh~~~~FFKdR--PEL~~------~~~~~~vLEvGCG~Gnta~pll~~~~~~i~AtD~s~k 114 (178)
+++.||.-|..... .|=-.. |-|.. ..+..+||++|||.|-.+.-|+..- ..++|+|++..
T Consensus 2 ~~~~Wd~rw~~~~~-~~~~~~p~~~L~~~~~~~~~~~~~rvL~~gCG~G~da~~LA~~G-~~V~avD~s~~ 70 (218)
T PRK13255 2 DPDFWHEKWAENQI-GFHQEEVNPLLQKYWPALALPAGSRVLVPLCGKSLDMLWLAEQG-HEVLGVELSEL 70 (218)
T ss_pred CHhHHHHHHcCCCC-CCCCCCCCHHHHHHHHhhCCCCCCeEEEeCCCChHhHHHHHhCC-CeEEEEccCHH
Confidence 35689999976642 331222 32221 1245699999999999999999864 58999998833
No 74
>PRK13943 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=97.48 E-value=0.00022 Score=63.35 Aligned_cols=67 Identities=18% Similarity=0.202 Sum_probs=47.3
Q ss_pred CCCceeEeeccCCchhHHHhHHhhh--hheeeeeccc--------ccccCCCcceEEEEcccccCCCCCCCCCcceEee
Q 035595 79 HEAALDAKGNFGNGSLIADFSVVIK--MKILASLVDG--------EYYNNGHENFSFLVDGEYYSNCPAVSGSQNYVIL 147 (178)
Q Consensus 79 ~~~~~vLEvGCG~Gnta~pll~~~~--~~i~AtD~s~--------k~~~~g~~N~~F~~~~~~~s~~p~~~~s~~~vil 147 (178)
.+..+|||+|||+|..+..++.... ..++++|++. +....|..|+.|..+..... ++.. ++.|+||+
T Consensus 79 ~~g~~VLDIG~GtG~~a~~LA~~~~~~g~VvgVDis~~~l~~Ar~~l~~~g~~nV~~i~gD~~~~-~~~~-~~fD~Ii~ 155 (322)
T PRK13943 79 DKGMRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVRRLGIENVIFVCGDGYYG-VPEF-APYDVIFV 155 (322)
T ss_pred CCCCEEEEEeCCccHHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHHHHcCCCcEEEEeCChhhc-cccc-CCccEEEE
Confidence 4568999999999999999998653 2589999773 33446788898887654322 2222 45777776
No 75
>PF13659 Methyltransf_26: Methyltransferase domain; PDB: 3GJY_A 3LPM_B 2NP6_D 1AQI_B 2ADM_B 2IH2_A 2JG3_A 2IBS_D 2NP7_A 2IBT_A ....
Probab=97.47 E-value=0.00011 Score=52.72 Aligned_cols=49 Identities=12% Similarity=0.138 Sum_probs=37.3
Q ss_pred ceeEeeccCCchhHHHhHHhhhhheeeeecc--------cccccCCC-cceEEEEccc
Q 035595 82 ALDAKGNFGNGSLIADFSVVIKMKILASLVD--------GEYYNNGH-ENFSFLVDGE 130 (178)
Q Consensus 82 ~~vLEvGCG~Gnta~pll~~~~~~i~AtD~s--------~k~~~~g~-~N~~F~~~~~ 130 (178)
.+|||+|||+|++++-++.....+++++|++ ......+. .+++|.+++.
T Consensus 2 ~~vlD~~~G~G~~~~~~~~~~~~~~~gvdi~~~~~~~a~~~~~~~~~~~~~~~~~~D~ 59 (117)
T PF13659_consen 2 DRVLDPGCGSGTFLLAALRRGAARVTGVDIDPEAVELARRNLPRNGLDDRVEVIVGDA 59 (117)
T ss_dssp EEEEEETSTTCHHHHHHHHHCTCEEEEEESSHHHHHHHHHHCHHCTTTTTEEEEESHH
T ss_pred CEEEEcCcchHHHHHHHHHHCCCeEEEEEECHHHHHHHHHHHHHccCCceEEEEECch
Confidence 4799999999999999998774589999977 23333444 4578888666
No 76
>TIGR01934 MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis methyltransferases. Note that a number of non-orthologous genes which are members of pfam03737 have been erroneously annotated as MenG methyltransferases.
Probab=97.47 E-value=0.00034 Score=54.87 Aligned_cols=68 Identities=15% Similarity=0.057 Sum_probs=45.4
Q ss_pred CCCceeEeeccCCchhHHHhHHhhh--hheeeeecccccccC------CCcceEEEEcccccCCCCCCCCCcceEeee
Q 035595 79 HEAALDAKGNFGNGSLIADFSVVIK--MKILASLVDGEYYNN------GHENFSFLVDGEYYSNCPAVSGSQNYVILA 148 (178)
Q Consensus 79 ~~~~~vLEvGCG~Gnta~pll~~~~--~~i~AtD~s~k~~~~------g~~N~~F~~~~~~~s~~p~~~~s~~~vil~ 148 (178)
.+..+|||+|||+|.....++.... .+++++|++...... ...++.|...... ..+ .-++..|++++.
T Consensus 38 ~~~~~vldiG~G~G~~~~~~~~~~~~~~~~~~iD~~~~~~~~~~~~~~~~~~i~~~~~d~~-~~~-~~~~~~D~i~~~ 113 (223)
T TIGR01934 38 FKGQKVLDVACGTGDLAIELAKSAPDRGKVTGVDFSSEMLEVAKKKSELPLNIEFIQADAE-ALP-FEDNSFDAVTIA 113 (223)
T ss_pred CCCCeEEEeCCCCChhHHHHHHhcCCCceEEEEECCHHHHHHHHHHhccCCCceEEecchh-cCC-CCCCcEEEEEEe
Confidence 3678999999999999999988754 378999987221111 3346778775553 222 114678887653
No 77
>PLN02336 phosphoethanolamine N-methyltransferase
Probab=97.46 E-value=0.0003 Score=63.30 Aligned_cols=67 Identities=7% Similarity=-0.065 Sum_probs=46.3
Q ss_pred CCCceeEeeccCCchhHHHhHHhhhhheeeeeccccc-------ccCCCcceEEEEcccccCCCCCC-CCCcceEeee
Q 035595 79 HEAALDAKGNFGNGSLIADFSVVIKMKILASLVDGEY-------YNNGHENFSFLVDGEYYSNCPAV-SGSQNYVILA 148 (178)
Q Consensus 79 ~~~~~vLEvGCG~Gnta~pll~~~~~~i~AtD~s~k~-------~~~g~~N~~F~~~~~~~s~~p~~-~~s~~~vil~ 148 (178)
.+..+|||||||+|..++.|+......++++|++..+ ......++.|...... ..+ + .++.|+|+..
T Consensus 265 ~~~~~vLDiGcG~G~~~~~la~~~~~~v~gvDiS~~~l~~A~~~~~~~~~~v~~~~~d~~-~~~--~~~~~fD~I~s~ 339 (475)
T PLN02336 265 KPGQKVLDVGCGIGGGDFYMAENFDVHVVGIDLSVNMISFALERAIGRKCSVEFEVADCT-KKT--YPDNSFDVIYSR 339 (475)
T ss_pred CCCCEEEEEeccCCHHHHHHHHhcCCEEEEEECCHHHHHHHHHHhhcCCCceEEEEcCcc-cCC--CCCCCEEEEEEC
Confidence 4567999999999999999987655589999988221 1111235888876654 222 2 3678988864
No 78
>PRK05134 bifunctional 3-demethylubiquinone-9 3-methyltransferase/ 2-octaprenyl-6-hydroxy phenol methylase; Provisional
Probab=97.44 E-value=0.00018 Score=58.22 Aligned_cols=68 Identities=10% Similarity=0.028 Sum_probs=44.4
Q ss_pred CCCceeEeeccCCchhHHHhHHhhhhheeeeeccccc--------ccCCCcceEEEEcccccCCCCCCCCCcceEeeee
Q 035595 79 HEAALDAKGNFGNGSLIADFSVVIKMKILASLVDGEY--------YNNGHENFSFLVDGEYYSNCPAVSGSQNYVILAN 149 (178)
Q Consensus 79 ~~~~~vLEvGCG~Gnta~pll~~~~~~i~AtD~s~k~--------~~~g~~N~~F~~~~~~~s~~p~~~~s~~~vil~n 149 (178)
.+..+|||||||+|.++..++... ..++++|.+... ...+. +++|...... ..+..-++..|+||+.+
T Consensus 47 ~~~~~vLdiG~G~G~~~~~l~~~~-~~v~~iD~s~~~~~~a~~~~~~~~~-~~~~~~~~~~-~~~~~~~~~fD~Ii~~~ 122 (233)
T PRK05134 47 LFGKRVLDVGCGGGILSESMARLG-ADVTGIDASEENIEVARLHALESGL-KIDYRQTTAE-ELAAEHPGQFDVVTCME 122 (233)
T ss_pred CCCCeEEEeCCCCCHHHHHHHHcC-CeEEEEcCCHHHHHHHHHHHHHcCC-ceEEEecCHH-HhhhhcCCCccEEEEhh
Confidence 356789999999999999888765 478999977222 12232 4666654432 22212246889987744
No 79
>PF07021 MetW: Methionine biosynthesis protein MetW; InterPro: IPR010743 This family consists of several bacterial and one archaeal methionine biosynthesis MetW proteins. Biosynthesis of methionine from homoserine in Pseudomonas putida takes place in three steps. The first step is the acylation of homoserine to yield an acyl-L-homoserine. This reaction is catalysed by the products of the metXW genes and is equivalent to the first step in enterobacteria, Gram-positive bacteria and fungi, except that in these microorganisms the reaction is catalysed by a single polypeptide (the product of the metA gene in Escherichia coli and the met5 gene product in Neurospora crassa). In P. putida, as in Gram-positive bacteria and certain fungi, the second and third steps are a direct sulphydrylation that converts the O-acyl-L-homoserine into homocysteine and further methylation to yield methionine. The latter reaction can be mediated by either of the two methionine synthetases present in the cells [].
Probab=97.41 E-value=9.6e-05 Score=62.51 Aligned_cols=71 Identities=15% Similarity=0.083 Sum_probs=48.5
Q ss_pred CCCceeEeeccCCchhHHHhHHhhhhheeeeecccccccCCCc-ceEEEEcccccCCCCCCCCCcceEeeee
Q 035595 79 HEAALDAKGNFGNGSLIADFSVVIKMKILASLVDGEYYNNGHE-NFSFLVDGEYYSNCPAVSGSQNYVILAN 149 (178)
Q Consensus 79 ~~~~~vLEvGCG~Gnta~pll~~~~~~i~AtD~s~k~~~~g~~-N~~F~~~~~~~s~~p~~~~s~~~vil~n 149 (178)
.+..+||++|||.|....-|...-.-..++++++...-.+.+. .+...+.+.+.++..-=..|-|+|||..
T Consensus 12 ~pgsrVLDLGCGdG~LL~~L~~~k~v~g~GvEid~~~v~~cv~rGv~Viq~Dld~gL~~f~d~sFD~VIlsq 83 (193)
T PF07021_consen 12 EPGSRVLDLGCGDGELLAYLKDEKQVDGYGVEIDPDNVAACVARGVSVIQGDLDEGLADFPDQSFDYVILSQ 83 (193)
T ss_pred CCCCEEEecCCCchHHHHHHHHhcCCeEEEEecCHHHHHHHHHcCCCEEECCHHHhHhhCCCCCccEEehHh
Confidence 4678999999999999888777544456777777432222222 2666666666565543388999999853
No 80
>PF05401 NodS: Nodulation protein S (NodS); InterPro: IPR008715 This entry consists of nodulation S (NodS) proteins. The products of the rhizobial nodulation genes are involved in the biosynthesis of lipochitin oligosaccharides (LCOs), which are host-specific signal molecules required for nodule formation. NodS is an S-adenosyl-L-methionine (SAM)-dependent methyltransferase involved in N methylation of LCOs. NodS uses N-deacetylated chitooligosaccharides, the products of the NodBC proteins, as its methyl acceptors [].; GO: 0008757 S-adenosylmethionine-dependent methyltransferase activity, 0009312 oligosaccharide biosynthetic process, 0009877 nodulation; PDB: 3OFK_D 3OFJ_A.
Probab=97.39 E-value=0.00023 Score=60.63 Aligned_cols=68 Identities=10% Similarity=0.061 Sum_probs=45.6
Q ss_pred CCCceeEeeccCCchhHHHhHHhhhhheeeeeccc------ccccCCCcceEEEEcccccCCCCCCCCCcceEeeeeh
Q 035595 79 HEAALDAKGNFGNGSLIADFSVVIKMKILASLVDG------EYYNNGHENFSFLVDGEYYSNCPAVSGSQNYVILANL 150 (178)
Q Consensus 79 ~~~~~vLEvGCG~Gnta~pll~~~~~~i~AtD~s~------k~~~~g~~N~~F~~~~~~~s~~p~~~~s~~~vil~nl 150 (178)
..-.++||+|||+|.+...|++.+. .++|+|++. +..-.+..+++|.+.....-.| ++.-|++|+.-+
T Consensus 42 ~ry~~alEvGCs~G~lT~~LA~rCd-~LlavDis~~Al~~Ar~Rl~~~~~V~~~~~dvp~~~P---~~~FDLIV~SEV 115 (201)
T PF05401_consen 42 RRYRRALEVGCSIGVLTERLAPRCD-RLLAVDISPRALARARERLAGLPHVEWIQADVPEFWP---EGRFDLIVLSEV 115 (201)
T ss_dssp SSEEEEEEE--TTSHHHHHHGGGEE-EEEEEES-HHHHHHHHHHTTT-SSEEEEES-TTT------SS-EEEEEEES-
T ss_pred cccceeEecCCCccHHHHHHHHhhC-ceEEEeCCHHHHHHHHHhcCCCCCeEEEECcCCCCCC---CCCeeEEEEehH
Confidence 4457899999999999999999996 999999871 2222456789999976532211 678999998654
No 81
>TIGR00740 methyltransferase, putative. A simple BLAST search finds all members of this family and weaker hits to a large number of known and predicted methyltransferases. A single iteration with PSI-BLAST, keeping only clear members of the family, leads to a large number of highly significant hits to a set of known and predicted methyltransferases with a large repertoire of different specifities. This model is restricted to a subfamily found so far only in the Proteobacteria, sharing consistent length, full-length homology, and on average better than 35 % identity. It is reasonable to predict equivalent function within this subfamily.
Probab=97.37 E-value=0.00041 Score=56.94 Aligned_cols=52 Identities=10% Similarity=-0.063 Sum_probs=36.7
Q ss_pred CCceeEeeccCCchhHHHhHHhh---hhheeeeecc--------cccccCC-CcceEEEEcccc
Q 035595 80 EAALDAKGNFGNGSLIADFSVVI---KMKILASLVD--------GEYYNNG-HENFSFLVDGEY 131 (178)
Q Consensus 80 ~~~~vLEvGCG~Gnta~pll~~~---~~~i~AtD~s--------~k~~~~g-~~N~~F~~~~~~ 131 (178)
+..+|||+|||+|+.+..++... ...++++|.+ ++....+ ..++.|......
T Consensus 53 ~~~~iLDlGcG~G~~~~~l~~~~~~p~~~v~gvD~s~~ml~~a~~~~~~~~~~~~v~~~~~d~~ 116 (239)
T TIGR00740 53 PDSNVYDLGCSRGAATLSARRNINQPNVKIIGIDNSQPMVERCRQHIAAYHSEIPVEILCNDIR 116 (239)
T ss_pred CCCEEEEecCCCCHHHHHHHHhcCCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEECChh
Confidence 55789999999999999998753 3579999987 2222222 236788776553
No 82
>PRK09328 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=97.36 E-value=0.00041 Score=57.22 Aligned_cols=66 Identities=12% Similarity=0.076 Sum_probs=45.3
Q ss_pred CCCceeEeeccCCchhHHHhHHhh-hhheeeeeccccc--------ccCCCcceEEEEcccccCCCCCCCCCcceEee
Q 035595 79 HEAALDAKGNFGNGSLIADFSVVI-KMKILASLVDGEY--------YNNGHENFSFLVDGEYYSNCPAVSGSQNYVIL 147 (178)
Q Consensus 79 ~~~~~vLEvGCG~Gnta~pll~~~-~~~i~AtD~s~k~--------~~~g~~N~~F~~~~~~~s~~p~~~~s~~~vil 147 (178)
.+..+|||+|||+|..++.++... ...++++|++.++ ......++.|.........+ .++.|++|.
T Consensus 107 ~~~~~vLDiG~GsG~~~~~la~~~~~~~v~~iDis~~~l~~a~~n~~~~~~~~i~~~~~d~~~~~~---~~~fD~Iv~ 181 (275)
T PRK09328 107 KEPLRVLDLGTGSGAIALALAKERPDAEVTAVDISPEALAVARRNAKHGLGARVEFLQGDWFEPLP---GGRFDLIVS 181 (275)
T ss_pred cCCCEEEEEcCcHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHhCCCCcEEEEEccccCcCC---CCceeEEEE
Confidence 356789999999999999999875 4589999987322 11234568888766532221 466777654
No 83
>TIGR03840 TMPT_Se_Te thiopurine S-methyltransferase, Se/Te detoxification family. Members of this family are thiopurine S-methyltransferase from a branch in which at least some member proteins can perform selenium methylation as a means to detoxify selenium, or perform a related detoxification of tellurium. Note that the EC number definition does not specify a particular thiopurine, but rather represents a class of activity.
Probab=97.35 E-value=0.00041 Score=57.78 Aligned_cols=58 Identities=12% Similarity=-0.029 Sum_probs=40.8
Q ss_pred HHHHHHhhcCCCCccccc--cccc---c---cCCCceeEeeccCCchhHHHhHHhhhhheeeeecccc
Q 035595 55 AWKRFHSRHSSGKFFKFT--AELS---N---CHEAALDAKGNFGNGSLIADFSVVIKMKILASLVDGE 114 (178)
Q Consensus 55 ~Wd~Fy~rh~~~~FFKdR--PEL~---~---~~~~~~vLEvGCG~Gnta~pll~~~~~~i~AtD~s~k 114 (178)
+||.-|..+. .-|-..+ |-|. . ..+..+||++|||.|--+.-|+..- ..++|+|++..
T Consensus 2 ~Wd~ry~~~~-~~w~~~~p~~~l~~~~~~l~~~~~~rvLd~GCG~G~da~~LA~~G-~~V~gvD~S~~ 67 (213)
T TIGR03840 2 FWHERWQEGQ-IGFHQSEVNPLLVKHWPALGLPAGARVFVPLCGKSLDLAWLAEQG-HRVLGVELSEI 67 (213)
T ss_pred hHHHHHhcCC-CCCccCCCCHHHHHHHHhhCCCCCCeEEEeCCCchhHHHHHHhCC-CeEEEEeCCHH
Confidence 6999996664 2333333 3221 1 1345799999999999999998764 58999998833
No 84
>TIGR03533 L3_gln_methyl protein-(glutamine-N5) methyltransferase, ribosomal protein L3-specific. Members of this protein family methylate ribosomal protein L3 on a glutamine side chain. This family is related to HemK, a protein-glutamine methyltranferase for peptide chain release factors.
Probab=97.34 E-value=0.00037 Score=60.04 Aligned_cols=65 Identities=8% Similarity=0.049 Sum_probs=45.0
Q ss_pred CCceeEeeccCCchhHHHhHHhh-hhheeeeecc--------cccccCCCc-ceEEEEcccccCCCCCCCCCcceEee
Q 035595 80 EAALDAKGNFGNGSLIADFSVVI-KMKILASLVD--------GEYYNNGHE-NFSFLVDGEYYSNCPAVSGSQNYVIL 147 (178)
Q Consensus 80 ~~~~vLEvGCG~Gnta~pll~~~-~~~i~AtD~s--------~k~~~~g~~-N~~F~~~~~~~s~~p~~~~s~~~vil 147 (178)
+..+|||+|||+|..++.++... ..+++|+|++ ..+...|+. ++.|..+.....++ +++.|++|.
T Consensus 121 ~~~~vLDlG~GsG~i~~~la~~~~~~~v~avDis~~al~~A~~n~~~~~~~~~i~~~~~D~~~~~~---~~~fD~Iv~ 195 (284)
T TIGR03533 121 PVKRILDLCTGSGCIAIACAYAFPEAEVDAVDISPDALAVAEINIERHGLEDRVTLIQSDLFAALP---GRKYDLIVS 195 (284)
T ss_pred CCCEEEEEeCchhHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECchhhccC---CCCccEEEE
Confidence 35689999999999999999864 3589999987 223334653 58888866532222 235676664
No 85
>COG2230 Cfa Cyclopropane fatty acid synthase and related methyltransferases [Cell envelope biogenesis, outer membrane]
Probab=97.33 E-value=0.00024 Score=63.02 Aligned_cols=51 Identities=12% Similarity=0.057 Sum_probs=42.3
Q ss_pred CCCceeEeeccCCchhHHHhHHhhhhheeeeecc--------cccccCCCc-ceEEEEcc
Q 035595 79 HEAALDAKGNFGNGSLIADFSVVIKMKILASLVD--------GEYYNNGHE-NFSFLVDG 129 (178)
Q Consensus 79 ~~~~~vLEvGCG~Gnta~pll~~~~~~i~AtD~s--------~k~~~~g~~-N~~F~~~~ 129 (178)
.+.++|||||||-|.+++-.++...-+++++++| ++....|.+ |+++...+
T Consensus 71 ~~G~~lLDiGCGWG~l~~~aA~~y~v~V~GvTlS~~Q~~~~~~r~~~~gl~~~v~v~l~d 130 (283)
T COG2230 71 KPGMTLLDIGCGWGGLAIYAAEEYGVTVVGVTLSEEQLAYAEKRIAARGLEDNVEVRLQD 130 (283)
T ss_pred CCCCEEEEeCCChhHHHHHHHHHcCCEEEEeeCCHHHHHHHHHHHHHcCCCcccEEEecc
Confidence 5789999999999999999999865689999977 556777888 77776543
No 86
>TIGR00536 hemK_fam HemK family putative methylases. The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. Both E. coli and H. influenzae have two members rather than one. The members from the Mycoplasmas have an additional C-terminal domain.
Probab=97.33 E-value=0.00037 Score=59.47 Aligned_cols=49 Identities=12% Similarity=0.135 Sum_probs=36.9
Q ss_pred ceeEeeccCCchhHHHhHHhh-hhheeeeecccc--------cccCCCcc-eEEEEccc
Q 035595 82 ALDAKGNFGNGSLIADFSVVI-KMKILASLVDGE--------YYNNGHEN-FSFLVDGE 130 (178)
Q Consensus 82 ~~vLEvGCG~Gnta~pll~~~-~~~i~AtD~s~k--------~~~~g~~N-~~F~~~~~ 130 (178)
.+|||+|||+|..++.++... ..+++|+|++.+ +...+..+ +.|..+..
T Consensus 116 ~~vLDlG~GsG~i~l~la~~~~~~~v~avDis~~al~~a~~n~~~~~~~~~v~~~~~d~ 174 (284)
T TIGR00536 116 LHILDLGTGSGCIALALAYEFPNAEVIAVDISPDALAVAEENAEKNQLEHRVEFIQSNL 174 (284)
T ss_pred CEEEEEeccHhHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECch
Confidence 689999999999999999865 358999998722 22335544 88887654
No 87
>PTZ00146 fibrillarin; Provisional
Probab=97.31 E-value=0.00047 Score=61.33 Aligned_cols=95 Identities=9% Similarity=0.115 Sum_probs=58.6
Q ss_pred hHHHHHHHhhcCCCCcccccccccccCCCceeEeeccCCchhHHHhHHhh--hhheeeeeccccc------ccCCCcceE
Q 035595 53 SDAWKRFHSRHSSGKFFKFTAELSNCHEAALDAKGNFGNGSLIADFSVVI--KMKILASLVDGEY------YNNGHENFS 124 (178)
Q Consensus 53 ~~~Wd~Fy~rh~~~~FFKdRPEL~~~~~~~~vLEvGCG~Gnta~pll~~~--~~~i~AtD~s~k~------~~~g~~N~~ 124 (178)
-+-|+-|.++=.. -..+.=..| ...+..+||++|||+|.++.+|+..+ .-.++|+|++.+. ......|+.
T Consensus 107 yR~w~p~rSKlaa-~i~~g~~~l-~IkpG~~VLDLGaG~G~~t~~lAdiVG~~G~VyAVD~s~r~~~dLl~~ak~r~NI~ 184 (293)
T PTZ00146 107 YRVWNPFRSKLAA-AIIGGVANI-PIKPGSKVLYLGAASGTTVSHVSDLVGPEGVVYAVEFSHRSGRDLTNMAKKRPNIV 184 (293)
T ss_pred eeeeCCcccHHHH-HHHCCccee-ccCCCCEEEEeCCcCCHHHHHHHHHhCCCCEEEEEECcHHHHHHHHHHhhhcCCCE
Confidence 3567776654431 122221222 33466899999999999999999987 3479999988431 111236888
Q ss_pred EEEcccccCCC-CCCCCCcceEeeee
Q 035595 125 FLVDGEYYSNC-PAVSGSQNYVILAN 149 (178)
Q Consensus 125 F~~~~~~~s~~-p~~~~s~~~vil~n 149 (178)
+...+...... ..+.+++|+|++-+
T Consensus 185 ~I~~Da~~p~~y~~~~~~vDvV~~Dv 210 (293)
T PTZ00146 185 PIIEDARYPQKYRMLVPMVDVIFADV 210 (293)
T ss_pred EEECCccChhhhhcccCCCCEEEEeC
Confidence 87766532211 12345899987654
No 88
>COG2890 HemK Methylase of polypeptide chain release factors [Translation, ribosomal structure and biogenesis]
Probab=97.30 E-value=0.00026 Score=61.40 Aligned_cols=59 Identities=14% Similarity=0.083 Sum_probs=44.6
Q ss_pred eeEeeccCCchhHHHhHHhhh-hheeeeecc--------cccccCCCcceEEEEccc----------ccCCCCCCCCC
Q 035595 83 LDAKGNFGNGSLIADFSVVIK-MKILASLVD--------GEYYNNGHENFSFLVDGE----------YYSNCPAVSGS 141 (178)
Q Consensus 83 ~vLEvGCG~Gnta~pll~~~~-~~i~AtD~s--------~k~~~~g~~N~~F~~~~~----------~~s~~p~~~~s 141 (178)
+|||+|||+|..|+-++.... ..++|||++ ..+...|+.++.+....- +.++||=||.+
T Consensus 113 ~ilDlGTGSG~iai~la~~~~~~~V~a~Dis~~Al~~A~~Na~~~~l~~~~~~~~dlf~~~~~~fDlIVsNPPYip~~ 190 (280)
T COG2890 113 RILDLGTGSGAIAIALAKEGPDAEVIAVDISPDALALARENAERNGLVRVLVVQSDLFEPLRGKFDLIVSNPPYIPAE 190 (280)
T ss_pred cEEEecCChHHHHHHHHhhCcCCeEEEEECCHHHHHHHHHHHHHcCCccEEEEeeecccccCCceeEEEeCCCCCCCc
Confidence 799999999999999999864 489999988 344555655555555421 33889999777
No 89
>PF02353 CMAS: Mycolic acid cyclopropane synthetase; InterPro: IPR003333 This entry represents mycolic acid cyclopropane synthases and related enzymes, including CmaA1, CmaA2 (cyclopropane mycolic acid synthase A1 and A2) and MmaA1-4 (methoxymycolic acid synthase A1-4). All are thought to be S-adenosyl-L-methionine (SAM) utilising methyltransferases []. Mycolic acid cyclopropane synthase or cyclopropane-fatty-acyl-phospholipid synthase (CFA synthase) 2.1.1.79 from EC catalyses the reaction: S-adenosyl-L-methionine + phospholipid olefinic fatty acid -> S-adenosyl-L-homocysteine + phospholipid cyclopropane fatty acid. The major mycolic acid produced by Mycobacterium tuberculosis contains two cis-cyclopropanes in the meromycolate chain. Cyclopropanation may contribute to the structural integrity of the cell wall complex [].; GO: 0008610 lipid biosynthetic process; PDB: 3HA5_A 2FK8_A 3HA7_A 3HA3_A 2FK7_A 1KPG_D 1KP9_B 1KPH_D 3VC2_E 3VC1_D ....
Probab=97.26 E-value=0.00066 Score=58.78 Aligned_cols=66 Identities=9% Similarity=0.035 Sum_probs=41.6
Q ss_pred cCCCceeEeeccCCchhHHHhHHhhhhheeeeecc--------cccccCCCcc-eEEEEcccccCCCCCCCCCcceEeee
Q 035595 78 CHEAALDAKGNFGNGSLIADFSVVIKMKILASLVD--------GEYYNNGHEN-FSFLVDGEYYSNCPAVSGSQNYVILA 148 (178)
Q Consensus 78 ~~~~~~vLEvGCG~Gnta~pll~~~~~~i~AtD~s--------~k~~~~g~~N-~~F~~~~~~~s~~p~~~~s~~~vil~ 148 (178)
..+..+|||||||.|++++-++....-+++++.+| ++..+.|..+ +++....-. .+++.-|-+|-+
T Consensus 60 l~~G~~vLDiGcGwG~~~~~~a~~~g~~v~gitlS~~Q~~~a~~~~~~~gl~~~v~v~~~D~~-----~~~~~fD~IvSi 134 (273)
T PF02353_consen 60 LKPGDRVLDIGCGWGGLAIYAAERYGCHVTGITLSEEQAEYARERIREAGLEDRVEVRLQDYR-----DLPGKFDRIVSI 134 (273)
T ss_dssp --TT-EEEEES-TTSHHHHHHHHHH--EEEEEES-HHHHHHHHHHHHCSTSSSTEEEEES-GG-----G---S-SEEEEE
T ss_pred CCCCCEEEEeCCCccHHHHHHHHHcCcEEEEEECCHHHHHHHHHHHHhcCCCCceEEEEeecc-----ccCCCCCEEEEE
Confidence 35788999999999999999999866688888866 5556778765 677665432 234477776655
No 90
>COG2227 UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase [Coenzyme metabolism]
Probab=97.24 E-value=0.00018 Score=62.90 Aligned_cols=32 Identities=9% Similarity=-0.020 Sum_probs=29.4
Q ss_pred CCceeEeeccCCchhHHHhHHhhhhheeeeecc
Q 035595 80 EAALDAKGNFGNGSLIADFSVVIKMKILASLVD 112 (178)
Q Consensus 80 ~~~~vLEvGCG~Gnta~pll~~~~~~i~AtD~s 112 (178)
+..+||+||||-|+...|++..-. .++|+|++
T Consensus 59 ~g~~vLDvGCGgG~Lse~mAr~Ga-~VtgiD~s 90 (243)
T COG2227 59 PGLRVLDVGCGGGILSEPLARLGA-SVTGIDAS 90 (243)
T ss_pred CCCeEEEecCCccHhhHHHHHCCC-eeEEecCC
Confidence 578999999999999999999885 99999977
No 91
>PLN02490 MPBQ/MSBQ methyltransferase
Probab=97.24 E-value=0.00047 Score=61.92 Aligned_cols=68 Identities=4% Similarity=-0.129 Sum_probs=45.0
Q ss_pred CCceeEeeccCCchhHHHhHHhh-hhheeeeecccc----cc-cCCCcceEEEEcccccCCCCCCCCCcceEeeee
Q 035595 80 EAALDAKGNFGNGSLIADFSVVI-KMKILASLVDGE----YY-NNGHENFSFLVDGEYYSNCPAVSGSQNYVILAN 149 (178)
Q Consensus 80 ~~~~vLEvGCG~Gnta~pll~~~-~~~i~AtD~s~k----~~-~~g~~N~~F~~~~~~~s~~p~~~~s~~~vil~n 149 (178)
+..+|||||||+|..++.++... ...++++|.+.. +. ..+..++.|..+... .++ --.++.|+||..+
T Consensus 113 ~~~~VLDLGcGtG~~~l~La~~~~~~~VtgVD~S~~mL~~A~~k~~~~~i~~i~gD~e-~lp-~~~~sFDvVIs~~ 186 (340)
T PLN02490 113 RNLKVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKECKIIEGDAE-DLP-FPTDYADRYVSAG 186 (340)
T ss_pred CCCEEEEEecCCcHHHHHHHHHCCCCEEEEEECCHHHHHHHHHhhhccCCeEEeccHH-hCC-CCCCceeEEEEcC
Confidence 45799999999999999998764 247899998721 11 112346777665543 222 1146789888755
No 92
>COG2242 CobL Precorrin-6B methylase 2 [Coenzyme metabolism]
Probab=97.22 E-value=0.00072 Score=57.05 Aligned_cols=67 Identities=12% Similarity=0.104 Sum_probs=47.5
Q ss_pred CCCceeEeeccCCchhHHHhHHh-hhhheeeeecc--------cccccCCCcceEEEEcccccCCCCCCCCCcceEee
Q 035595 79 HEAALDAKGNFGNGSLIADFSVV-IKMKILASLVD--------GEYYNNGHENFSFLVDGEYYSNCPAVSGSQNYVIL 147 (178)
Q Consensus 79 ~~~~~vLEvGCG~Gnta~pll~~-~~~~i~AtD~s--------~k~~~~g~~N~~F~~~~~~~s~~p~~~~s~~~vil 147 (178)
.+.+++++||||||+.++-++.. ...+++|+|.+ ..++.-|+.|+....+.+..-|+ .++ +.|.+.|
T Consensus 33 ~~g~~l~DIGaGtGsi~iE~a~~~p~~~v~AIe~~~~a~~~~~~N~~~fg~~n~~vv~g~Ap~~L~-~~~-~~daiFI 108 (187)
T COG2242 33 RPGDRLWDIGAGTGSITIEWALAGPSGRVIAIERDEEALELIERNAARFGVDNLEVVEGDAPEALP-DLP-SPDAIFI 108 (187)
T ss_pred CCCCEEEEeCCCccHHHHHHHHhCCCceEEEEecCHHHHHHHHHHHHHhCCCcEEEEeccchHhhc-CCC-CCCEEEE
Confidence 57789999999999999999943 35689999975 33445579999988866642222 333 4555544
No 93
>TIGR01177 conserved hypothetical protein TIGR01177. This family is found exclusively in the Archaea.
Probab=97.19 E-value=0.00066 Score=59.07 Aligned_cols=66 Identities=15% Similarity=0.110 Sum_probs=45.2
Q ss_pred CCCceeEeeccCCchhHHHhHHhhhhheeeeeccc--------ccccCCCcceEEEEcccccCCCCCCCCCcceEee
Q 035595 79 HEAALDAKGNFGNGSLIADFSVVIKMKILASLVDG--------EYYNNGHENFSFLVDGEYYSNCPAVSGSQNYVIL 147 (178)
Q Consensus 79 ~~~~~vLEvGCG~Gnta~pll~~~~~~i~AtD~s~--------k~~~~g~~N~~F~~~~~~~s~~p~~~~s~~~vil 147 (178)
.+..+|||+|||+|+.++..+... ..++++|++. .+...|..++.+..++.. .+|.. .++.|++|.
T Consensus 181 ~~g~~vLDp~cGtG~~lieaa~~~-~~v~g~Di~~~~~~~a~~nl~~~g~~~i~~~~~D~~-~l~~~-~~~~D~Iv~ 254 (329)
T TIGR01177 181 TEGDRVLDPFCGTGGFLIEAGLMG-AKVIGCDIDWKMVAGARINLEHYGIEDFFVKRGDAT-KLPLS-SESVDAIAT 254 (329)
T ss_pred CCcCEEEECCCCCCHHHHHHHHhC-CeEEEEcCCHHHHHHHHHHHHHhCCCCCeEEecchh-cCCcc-cCCCCEEEE
Confidence 466799999999999988765543 5899999873 233446677777776553 23211 456777665
No 94
>PRK11805 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=97.18 E-value=0.00059 Score=59.69 Aligned_cols=63 Identities=8% Similarity=0.050 Sum_probs=44.3
Q ss_pred ceeEeeccCCchhHHHhHHhh-hhheeeeecc--------cccccCCCc-ceEEEEcccccCCCCCCCCCcceEee
Q 035595 82 ALDAKGNFGNGSLIADFSVVI-KMKILASLVD--------GEYYNNGHE-NFSFLVDGEYYSNCPAVSGSQNYVIL 147 (178)
Q Consensus 82 ~~vLEvGCG~Gnta~pll~~~-~~~i~AtD~s--------~k~~~~g~~-N~~F~~~~~~~s~~p~~~~s~~~vil 147 (178)
.+|||+|||+|..++.++... ...++|+|++ +.+...|.. ++.|..+.....++ +++.|+||.
T Consensus 135 ~~VLDlG~GsG~iai~la~~~p~~~V~avDis~~al~~A~~n~~~~~l~~~i~~~~~D~~~~l~---~~~fDlIvs 207 (307)
T PRK11805 135 TRILDLCTGSGCIAIACAYAFPDAEVDAVDISPDALAVAEINIERHGLEDRVTLIESDLFAALP---GRRYDLIVS 207 (307)
T ss_pred CEEEEEechhhHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCCCCcEEEEECchhhhCC---CCCccEEEE
Confidence 689999999999999999864 3589999987 223334553 48888876542332 246777664
No 95
>COG2518 Pcm Protein-L-isoaspartate carboxylmethyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=97.16 E-value=0.00067 Score=57.97 Aligned_cols=59 Identities=12% Similarity=0.026 Sum_probs=45.9
Q ss_pred cccccCCCceeEeeccCCchhHHHhHHhhhhheeeeecc--------cccccCCCcceEEEEcccccC
Q 035595 74 ELSNCHEAALDAKGNFGNGSLIADFSVVIKMKILASLVD--------GEYYNNGHENFSFLVDGEYYS 133 (178)
Q Consensus 74 EL~~~~~~~~vLEvGCG~Gnta~pll~~~~~~i~AtD~s--------~k~~~~g~~N~~F~~~~~~~s 133 (178)
+++...+.++|||||||+|-++.=|+.-+. +++.+++. ++...-|..|+.+.+++-..+
T Consensus 66 ~~L~~~~g~~VLEIGtGsGY~aAvla~l~~-~V~siEr~~~L~~~A~~~L~~lg~~nV~v~~gDG~~G 132 (209)
T COG2518 66 QLLELKPGDRVLEIGTGSGYQAAVLARLVG-RVVSIERIEELAEQARRNLETLGYENVTVRHGDGSKG 132 (209)
T ss_pred HHhCCCCCCeEEEECCCchHHHHHHHHHhC-eEEEEEEcHHHHHHHHHHHHHcCCCceEEEECCcccC
Confidence 334456789999999999999999998886 88887755 345667898998888666433
No 96
>KOG3010 consensus Methyltransferase [General function prediction only]
Probab=97.16 E-value=0.0007 Score=59.83 Aligned_cols=66 Identities=17% Similarity=0.121 Sum_probs=43.6
Q ss_pred ceeEeeccCCchhHHHhHHhhhhheeeeeccccc--ccCCCcceEEEEcccccCCC-----CCCCCCcceEeee
Q 035595 82 ALDAKGNFGNGSLIADFSVVIKMKILASLVDGEY--YNNGHENFSFLVDGEYYSNC-----PAVSGSQNYVILA 148 (178)
Q Consensus 82 ~~vLEvGCG~Gnta~pll~~~~~~i~AtD~s~k~--~~~g~~N~~F~~~~~~~s~~-----p~~~~s~~~vil~ 148 (178)
..++|+|||+|-|++=++++.+ .++|||+++.- -..+..+++....+.-.+.. .|.+.|||+|+-+
T Consensus 35 ~~a~DvG~G~Gqa~~~iae~~k-~VIatD~s~~mL~~a~k~~~~~y~~t~~~ms~~~~v~L~g~e~SVDlI~~A 107 (261)
T KOG3010|consen 35 RLAWDVGTGNGQAARGIAEHYK-EVIATDVSEAMLKVAKKHPPVTYCHTPSTMSSDEMVDLLGGEESVDLITAA 107 (261)
T ss_pred ceEEEeccCCCcchHHHHHhhh-hheeecCCHHHHHHhhcCCCcccccCCccccccccccccCCCcceeeehhh
Confidence 3789999999988888888887 99999988321 11233444444444322222 2228999998864
No 97
>TIGR03704 PrmC_rel_meth putative protein-(glutamine-N5) methyltransferase, unknown substrate-specific. This protein family is closely related to two different families of protein-(glutamine-N5) methyltransferase. The first is PrmB, which modifies ribosomal protein L3 in some bacteria. The second is PrmC (HemK), which modifies peptide chain release factors 1 and 2 in most bacteria and also in eukaryotes. The glutamine side chain-binding motif NPPY shared by PrmB and PrmC is N[VAT]PY in this family. The protein substrate is unknown.
Probab=97.16 E-value=0.00031 Score=59.49 Aligned_cols=66 Identities=12% Similarity=0.103 Sum_probs=40.7
Q ss_pred CceeEeeccCCchhHHHhHHhh-hhheeeeecccccccCCC-----cceEEEEcccccCCCCCCCCCcceEe
Q 035595 81 AALDAKGNFGNGSLIADFSVVI-KMKILASLVDGEYYNNGH-----ENFSFLVDGEYYSNCPAVSGSQNYVI 146 (178)
Q Consensus 81 ~~~vLEvGCG~Gnta~pll~~~-~~~i~AtD~s~k~~~~g~-----~N~~F~~~~~~~s~~p~~~~s~~~vi 146 (178)
..+|||+|||+|..++.++... ...++|+|++..+-+..- .+++|..+.....++..+.+..|+||
T Consensus 87 ~~~vLDlg~GsG~i~l~la~~~~~~~v~~vDis~~al~~A~~N~~~~~~~~~~~D~~~~l~~~~~~~fDlVv 158 (251)
T TIGR03704 87 TLVVVDLCCGSGAVGAALAAALDGIELHAADIDPAAVRCARRNLADAGGTVHEGDLYDALPTALRGRVDILA 158 (251)
T ss_pred CCEEEEecCchHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCEEEEeechhhcchhcCCCEeEEE
Confidence 4589999999999999998764 347899998732211111 11466665543233333345667644
No 98
>PRK10909 rsmD 16S rRNA m(2)G966-methyltransferase; Provisional
Probab=97.15 E-value=0.00041 Score=57.58 Aligned_cols=51 Identities=12% Similarity=-0.111 Sum_probs=36.0
Q ss_pred CCceeEeeccCCchhHHHhHHhhhhheeeeeccccc--------ccCCCcceEEEEccc
Q 035595 80 EAALDAKGNFGNGSLIADFSVVIKMKILASLVDGEY--------YNNGHENFSFLVDGE 130 (178)
Q Consensus 80 ~~~~vLEvGCG~Gnta~pll~~~~~~i~AtD~s~k~--------~~~g~~N~~F~~~~~ 130 (178)
+..+|||+|||+|+.++..+.....+++++|.+.++ ...|..|+.|..+..
T Consensus 53 ~~~~vLDl~~GsG~l~l~~lsr~a~~V~~vE~~~~a~~~a~~Nl~~~~~~~v~~~~~D~ 111 (199)
T PRK10909 53 VDARCLDCFAGSGALGLEALSRYAAGATLLEMDRAVAQQLIKNLATLKAGNARVVNTNA 111 (199)
T ss_pred CCCEEEEcCCCccHHHHHHHHcCCCEEEEEECCHHHHHHHHHHHHHhCCCcEEEEEchH
Confidence 356899999999999997554333488998876322 334666788877654
No 99
>KOG1271 consensus Methyltransferases [General function prediction only]
Probab=97.12 E-value=0.0008 Score=58.16 Aligned_cols=78 Identities=15% Similarity=0.137 Sum_probs=55.1
Q ss_pred cchHHHHHHHhhcCCCCccccc---ccc-----------------cc---c-CCCceeEeeccCCchhHHHhHHh-hhhh
Q 035595 51 KDSDAWKRFHSRHSSGKFFKFT---AEL-----------------SN---C-HEAALDAKGNFGNGSLIADFSVV-IKMK 105 (178)
Q Consensus 51 ~~~~~Wd~Fy~rh~~~~FFKdR---PEL-----------------~~---~-~~~~~vLEvGCG~Gnta~pll~~-~~~~ 105 (178)
-..++||.-|.+-=+ || |.. .|. .. . ....+||++|||+|...+.|+.. ...+
T Consensus 16 GtK~yWD~~Y~~El~-Nf-r~hgd~GEvWFg~~ae~riv~wl~d~~~~~rv~~~A~~VlDLGtGNG~~L~~L~~egf~~~ 93 (227)
T KOG1271|consen 16 GTKSYWDAAYELELT-NF-REHGDEGEVWFGEDAEERIVDWLKDLIVISRVSKQADRVLDLGTGNGHLLFQLAKEGFQSK 93 (227)
T ss_pred chHHHHHHHHHHHHh-hc-ccCCCccceecCCcHHHHHHHHHHhhhhhhhhcccccceeeccCCchHHHHHHHHhcCCCC
Confidence 367899999977642 43 443 111 11 1 23349999999999999999985 3445
Q ss_pred eeeeecc--------cccccCCCcc-eEEEEccc
Q 035595 106 ILASLVD--------GEYYNNGHEN-FSFLVDGE 130 (178)
Q Consensus 106 i~AtD~s--------~k~~~~g~~N-~~F~~~~~ 130 (178)
.+++|-+ ..+...|..| |+|.++..
T Consensus 94 L~GvDYs~~AV~LA~niAe~~~~~n~I~f~q~DI 127 (227)
T KOG1271|consen 94 LTGVDYSEKAVELAQNIAERDGFSNEIRFQQLDI 127 (227)
T ss_pred ccccccCHHHHHHHHHHHHhcCCCcceeEEEeec
Confidence 7888854 5567788998 99999766
No 100
>PRK14904 16S rRNA methyltransferase B; Provisional
Probab=97.12 E-value=0.001 Score=60.44 Aligned_cols=68 Identities=12% Similarity=-0.003 Sum_probs=47.9
Q ss_pred ccCCCceeEeeccCCchhHHHhHHhh--hhheeeeecc--------cccccCCCcceEEEEcccccCCCCCCCCCcceEe
Q 035595 77 NCHEAALDAKGNFGNGSLIADFSVVI--KMKILASLVD--------GEYYNNGHENFSFLVDGEYYSNCPAVSGSQNYVI 146 (178)
Q Consensus 77 ~~~~~~~vLEvGCG~Gnta~pll~~~--~~~i~AtD~s--------~k~~~~g~~N~~F~~~~~~~s~~p~~~~s~~~vi 146 (178)
...+..+|||+|||+|..++.++... ..+++|+|++ +++...|+.|+.|...... .+++ +++.|+|+
T Consensus 247 ~~~~g~~VLDlgaG~G~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~g~~~v~~~~~Da~-~~~~--~~~fD~Vl 323 (445)
T PRK14904 247 NPQPGSTVLDLCAAPGGKSTFMAELMQNRGQITAVDRYPQKLEKIRSHASALGITIIETIEGDAR-SFSP--EEQPDAIL 323 (445)
T ss_pred CCCCCCEEEEECCCCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHhCCCeEEEEeCccc-cccc--CCCCCEEE
Confidence 33456899999999999988888753 2479999977 4445568888999886654 2222 24566665
Q ss_pred e
Q 035595 147 L 147 (178)
Q Consensus 147 l 147 (178)
+
T Consensus 324 ~ 324 (445)
T PRK14904 324 L 324 (445)
T ss_pred E
Confidence 4
No 101
>TIGR03438 probable methyltransferase. This model represents a distinct set of uncharacterized proteins found in the bacteria. Analysis by PSI-BLAST shows remote sequence homology to methyltransferases
Probab=97.12 E-value=0.00048 Score=59.46 Aligned_cols=58 Identities=5% Similarity=0.074 Sum_probs=42.3
Q ss_pred chHHHHHHHhhcCCCCccccc----------cccccc-CCCceeEeeccCCchhHHHhHHhh--hhheeeeecc
Q 035595 52 DSDAWKRFHSRHSSGKFFKFT----------AELSNC-HEAALDAKGNFGNGSLIADFSVVI--KMKILASLVD 112 (178)
Q Consensus 52 ~~~~Wd~Fy~rh~~~~FFKdR----------PEL~~~-~~~~~vLEvGCG~Gnta~pll~~~--~~~i~AtD~s 112 (178)
.++-|++.+. .. .++--| ++++.. .+..+|||+|||||..+.+|+... ..+++++|+|
T Consensus 27 G~~lf~~i~~-~p--eYy~tr~E~~il~~~~~~ia~~~~~~~~iLELGcGtG~~t~~Ll~~l~~~~~~~~iDiS 97 (301)
T TIGR03438 27 GSELFEQICE-LP--EYYPTRTEAAILERHADEIAAATGAGCELVELGSGSSRKTRLLLDALRQPARYVPIDIS 97 (301)
T ss_pred HHHHHHHHHC-CC--ccccHHHHHHHHHHHHHHHHHhhCCCCeEEecCCCcchhHHHHHHhhccCCeEEEEECC
Confidence 5567888873 32 466555 333322 245789999999999999999875 3589999988
No 102
>PRK14967 putative methyltransferase; Provisional
Probab=97.12 E-value=0.00068 Score=55.47 Aligned_cols=63 Identities=13% Similarity=-0.043 Sum_probs=40.9
Q ss_pred CCceeEeeccCCchhHHHhHHhhhhheeeeeccccc--------ccCCCcceEEEEcccccCCCCCC-CCCcceEee
Q 035595 80 EAALDAKGNFGNGSLIADFSVVIKMKILASLVDGEY--------YNNGHENFSFLVDGEYYSNCPAV-SGSQNYVIL 147 (178)
Q Consensus 80 ~~~~vLEvGCG~Gnta~pll~~~~~~i~AtD~s~k~--------~~~g~~N~~F~~~~~~~s~~p~~-~~s~~~vil 147 (178)
+..+|||+|||+|..++.++.....+++++|++... ...+. ++.+....... .+ .++.|+||+
T Consensus 36 ~~~~vLDlGcG~G~~~~~la~~~~~~v~~vD~s~~~l~~a~~n~~~~~~-~~~~~~~d~~~----~~~~~~fD~Vi~ 107 (223)
T PRK14967 36 PGRRVLDLCTGSGALAVAAAAAGAGSVTAVDISRRAVRSARLNALLAGV-DVDVRRGDWAR----AVEFRPFDVVVS 107 (223)
T ss_pred CCCeEEEecCCHHHHHHHHHHcCCCeEEEEECCHHHHHHHHHHHHHhCC-eeEEEECchhh----hccCCCeeEEEE
Confidence 457999999999999988887532378999988322 22333 46666544331 23 356777664
No 103
>TIGR00406 prmA ribosomal protein L11 methyltransferase. Ribosomal protein L11 methyltransferase is an S-adenosyl-L-methionine-dependent methyltransferase required for the modification of ribosomal protein L11. This protein is found in bacteria and (with a probable transit peptide) in Arabidopsis.
Probab=97.10 E-value=0.00093 Score=57.36 Aligned_cols=64 Identities=11% Similarity=0.002 Sum_probs=41.0
Q ss_pred CCceeEeeccCCchhHHHhHHhhhhheeeeecccc--------cccCCCcc-eEEEEcccccCCCCCCCCCcceEee
Q 035595 80 EAALDAKGNFGNGSLIADFSVVIKMKILASLVDGE--------YYNNGHEN-FSFLVDGEYYSNCPAVSGSQNYVIL 147 (178)
Q Consensus 80 ~~~~vLEvGCG~Gnta~pll~~~~~~i~AtD~s~k--------~~~~g~~N-~~F~~~~~~~s~~p~~~~s~~~vil 147 (178)
+..+|||+|||+|..++.++..-..+++|+|++.. ...+++.+ +.+.... +.+..+++.|+|+.
T Consensus 159 ~g~~VLDvGcGsG~lai~aa~~g~~~V~avDid~~al~~a~~n~~~n~~~~~~~~~~~~----~~~~~~~~fDlVva 231 (288)
T TIGR00406 159 KDKNVIDVGCGSGILSIAALKLGAAKVVGIDIDPLAVESARKNAELNQVSDRLQVKLIY----LEQPIEGKADVIVA 231 (288)
T ss_pred CCCEEEEeCCChhHHHHHHHHcCCCeEEEEECCHHHHHHHHHHHHHcCCCcceEEEecc----cccccCCCceEEEE
Confidence 34799999999999998877653347999998732 22233332 3333322 22334678898875
No 104
>PRK14903 16S rRNA methyltransferase B; Provisional
Probab=97.10 E-value=0.00079 Score=61.44 Aligned_cols=72 Identities=10% Similarity=0.021 Sum_probs=51.1
Q ss_pred ccccCCCceeEeeccCCchhHHHhHHhh--hhheeeeecc--------cccccCCCcceEEEEcccccCCCCCCCCCcce
Q 035595 75 LSNCHEAALDAKGNFGNGSLIADFSVVI--KMKILASLVD--------GEYYNNGHENFSFLVDGEYYSNCPAVSGSQNY 144 (178)
Q Consensus 75 L~~~~~~~~vLEvGCG~Gnta~pll~~~--~~~i~AtD~s--------~k~~~~g~~N~~F~~~~~~~s~~p~~~~s~~~ 144 (178)
++...+..+|||+|||+|.-++-++... ..+++|+|++ +++...|+.|+.|...... .++..+.++.|.
T Consensus 232 ~l~~~~g~~VLD~cagpGgkt~~la~~~~~~g~V~a~Dis~~rl~~~~~n~~r~g~~~v~~~~~Da~-~l~~~~~~~fD~ 310 (431)
T PRK14903 232 LMELEPGLRVLDTCAAPGGKTTAIAELMKDQGKILAVDISREKIQLVEKHAKRLKLSSIEIKIADAE-RLTEYVQDTFDR 310 (431)
T ss_pred HhCCCCCCEEEEeCCCccHHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHHcCCCeEEEEECchh-hhhhhhhccCCE
Confidence 3444567899999999999998888764 4589999987 4445668888888886654 233334556666
Q ss_pred Eee
Q 035595 145 VIL 147 (178)
Q Consensus 145 vil 147 (178)
|++
T Consensus 311 Vl~ 313 (431)
T PRK14903 311 ILV 313 (431)
T ss_pred EEE
Confidence 654
No 105
>PRK11705 cyclopropane fatty acyl phospholipid synthase; Provisional
Probab=97.09 E-value=0.00098 Score=60.07 Aligned_cols=64 Identities=9% Similarity=0.076 Sum_probs=43.5
Q ss_pred CCCceeEeeccCCchhHHHhHHhhhhheeeeeccccccc------CCCcceEEEEcccccCCCCCCCCCcceEeee
Q 035595 79 HEAALDAKGNFGNGSLIADFSVVIKMKILASLVDGEYYN------NGHENFSFLVDGEYYSNCPAVSGSQNYVILA 148 (178)
Q Consensus 79 ~~~~~vLEvGCG~Gnta~pll~~~~~~i~AtD~s~k~~~------~g~~N~~F~~~~~~~s~~p~~~~s~~~vil~ 148 (178)
.+..+|||||||+|..+..++.....+++++|++....+ .+. +++|...... .++++.|.|+.+
T Consensus 166 ~~g~rVLDIGcG~G~~a~~la~~~g~~V~giDlS~~~l~~A~~~~~~l-~v~~~~~D~~-----~l~~~fD~Ivs~ 235 (383)
T PRK11705 166 KPGMRVLDIGCGWGGLARYAAEHYGVSVVGVTISAEQQKLAQERCAGL-PVEIRLQDYR-----DLNGQFDRIVSV 235 (383)
T ss_pred CCCCEEEEeCCCccHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhccC-eEEEEECchh-----hcCCCCCEEEEe
Confidence 466899999999999999998765558999998722211 122 3566554322 236788988754
No 106
>COG2263 Predicted RNA methylase [Translation, ribosomal structure and biogenesis]
Probab=97.05 E-value=0.00099 Score=56.87 Aligned_cols=52 Identities=19% Similarity=0.137 Sum_probs=38.4
Q ss_pred CCceeEeeccCCchhHHHhHHhhhhheeeeeccccc-------ccCCCcceEEEEcccc
Q 035595 80 EAALDAKGNFGNGSLIADFSVVIKMKILASLVDGEY-------YNNGHENFSFLVDGEY 131 (178)
Q Consensus 80 ~~~~vLEvGCG~Gnta~pll~~~~~~i~AtD~s~k~-------~~~g~~N~~F~~~~~~ 131 (178)
+..+||++|||||..++-.+---...++|+|++.++ +..+.-++.|..+...
T Consensus 45 ~g~~V~DlG~GTG~La~ga~~lGa~~V~~vdiD~~a~ei~r~N~~~l~g~v~f~~~dv~ 103 (198)
T COG2263 45 EGKTVLDLGAGTGILAIGAALLGASRVLAVDIDPEALEIARANAEELLGDVEFVVADVS 103 (198)
T ss_pred CCCEEEEcCCCcCHHHHHHHhcCCcEEEEEecCHHHHHHHHHHHHhhCCceEEEEcchh
Confidence 356899999999999998877655589999977222 2335556888887663
No 107
>PRK15001 SAM-dependent 23S ribosomal RNA mG1835 methyltransferase; Provisional
Probab=97.00 E-value=0.0013 Score=59.85 Aligned_cols=63 Identities=14% Similarity=0.038 Sum_probs=42.2
Q ss_pred CceeEeeccCCchhHHHhHHhh-hhheeeeeccccc--------ccCC---CcceEEEEcccccCCCCCC-CCCcceEee
Q 035595 81 AALDAKGNFGNGSLIADFSVVI-KMKILASLVDGEY--------YNNG---HENFSFLVDGEYYSNCPAV-SGSQNYVIL 147 (178)
Q Consensus 81 ~~~vLEvGCG~Gnta~pll~~~-~~~i~AtD~s~k~--------~~~g---~~N~~F~~~~~~~s~~p~~-~~s~~~vil 147 (178)
..+|||+|||+|..++-++... ..+++++|++..+ ..++ ..++.|...... +.+ +++.|+||.
T Consensus 229 ~~~VLDLGCGtGvi~i~la~~~P~~~V~~vD~S~~Av~~A~~N~~~n~~~~~~~v~~~~~D~l----~~~~~~~fDlIls 304 (378)
T PRK15001 229 EGEIVDLGCGNGVIGLTLLDKNPQAKVVFVDESPMAVASSRLNVETNMPEALDRCEFMINNAL----SGVEPFRFNAVLC 304 (378)
T ss_pred CCeEEEEeccccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCcccCceEEEEEcccc----ccCCCCCEEEEEE
Confidence 3589999999999999998864 4589999988221 1122 346777765443 223 346676665
No 108
>TIGR02716 C20_methyl_CrtF C-20 methyltransferase BchU. Members of this protein family are the S-adenosylmethionine-depenedent C-20 methyltransferase BchU, part of the pathway of bacteriochlorophyll c production in photosynthetic green sulfur bacteria. The position modified by this enzyme represents the difference between bacteriochlorophylls c and d; strains lacking this protein can only produced bacteriochlorophyll d.
Probab=96.99 E-value=0.0024 Score=54.46 Aligned_cols=68 Identities=9% Similarity=0.015 Sum_probs=46.7
Q ss_pred cCCCceeEeeccCCchhHHHhHHhh-hhheeeeecc-------cccccCCCc-ceEEEEcccccCCCCCCCCCcceEeee
Q 035595 78 CHEAALDAKGNFGNGSLIADFSVVI-KMKILASLVD-------GEYYNNGHE-NFSFLVDGEYYSNCPAVSGSQNYVILA 148 (178)
Q Consensus 78 ~~~~~~vLEvGCG~Gnta~pll~~~-~~~i~AtD~s-------~k~~~~g~~-N~~F~~~~~~~s~~p~~~~s~~~vil~ 148 (178)
..+..+||+||||+|..++.++... ..++++.|.. ++....|.. +++|....... . .+++ .|++++.
T Consensus 147 ~~~~~~vlDiG~G~G~~~~~~~~~~p~~~~~~~D~~~~~~~a~~~~~~~gl~~rv~~~~~d~~~-~--~~~~-~D~v~~~ 222 (306)
T TIGR02716 147 LDGVKKMIDVGGGIGDISAAMLKHFPELDSTILNLPGAIDLVNENAAEKGVADRMRGIAVDIYK-E--SYPE-ADAVLFC 222 (306)
T ss_pred CCCCCEEEEeCCchhHHHHHHHHHCCCCEEEEEecHHHHHHHHHHHHhCCccceEEEEecCccC-C--CCCC-CCEEEeE
Confidence 3466899999999999999999875 4567777743 344445554 48888876541 1 1222 4888876
Q ss_pred e
Q 035595 149 N 149 (178)
Q Consensus 149 n 149 (178)
+
T Consensus 223 ~ 223 (306)
T TIGR02716 223 R 223 (306)
T ss_pred h
Confidence 6
No 109
>TIGR02143 trmA_only tRNA (uracil-5-)-methyltransferase. This family consists exclusively of proteins believed to act as tRNA (uracil-5-)-methyltransferase. All members of far are proteobacterial. The seed alignment was taken directly from pfam05958 in Pfam 12.0, but higher cutoffs are used to select only functionally equivalent proteins. Homologous proteins excluded by the higher cutoff scores of this model include other uracil methyltransferases, such as RumA, active on rRNA.
Probab=96.94 E-value=0.0008 Score=59.81 Aligned_cols=49 Identities=14% Similarity=0.127 Sum_probs=40.3
Q ss_pred ceeEeeccCCchhHHHhHHhhhhheeeeecc--------cccccCCCcceEEEEcccc
Q 035595 82 ALDAKGNFGNGSLIADFSVVIKMKILASLVD--------GEYYNNGHENFSFLVDGEY 131 (178)
Q Consensus 82 ~~vLEvGCG~Gnta~pll~~~~~~i~AtD~s--------~k~~~~g~~N~~F~~~~~~ 131 (178)
.+|||+|||+|+.+++|+...+ +++|+|.+ +.+..+|+.|+.|..+...
T Consensus 199 ~~vlDl~~G~G~~sl~la~~~~-~v~~vE~~~~av~~a~~n~~~~~~~~v~~~~~d~~ 255 (353)
T TIGR02143 199 GDLLELYCGNGNFSLALAQNFR-RVLATEIAKPSVNAAQYNIAANNIDNVQIIRMSAE 255 (353)
T ss_pred CcEEEEeccccHHHHHHHHhCC-EEEEEECCHHHHHHHHHHHHHcCCCcEEEEEcCHH
Confidence 4699999999999999999886 89999977 3344567888999887764
No 110
>PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed
Probab=96.92 E-value=0.0013 Score=61.47 Aligned_cols=50 Identities=6% Similarity=0.006 Sum_probs=36.1
Q ss_pred CceeEeeccCCchhHHHhHHhh-hhheeeeeccc--------ccccCCCc-ceEEEEccc
Q 035595 81 AALDAKGNFGNGSLIADFSVVI-KMKILASLVDG--------EYYNNGHE-NFSFLVDGE 130 (178)
Q Consensus 81 ~~~vLEvGCG~Gnta~pll~~~-~~~i~AtD~s~--------k~~~~g~~-N~~F~~~~~ 130 (178)
..+|||+|||+|..++.++... ..+++|+|++. .+...|+. ++.|..+..
T Consensus 139 ~~~VLDlG~GsG~iai~la~~~p~~~v~avDis~~al~~A~~N~~~~~l~~~v~~~~~D~ 198 (506)
T PRK01544 139 FLNILELGTGSGCIAISLLCELPNANVIATDISLDAIEVAKSNAIKYEVTDRIQIIHSNW 198 (506)
T ss_pred CCEEEEccCchhHHHHHHHHHCCCCeEEEEECCHHHHHHHHHHHHHcCCccceeeeecch
Confidence 3589999999999999998753 45899999872 22333543 477776554
No 111
>TIGR00452 methyltransferase, putative. Known examples to date are restricted to the proteobacteria.
Probab=96.90 E-value=0.0016 Score=57.73 Aligned_cols=67 Identities=6% Similarity=-0.150 Sum_probs=43.4
Q ss_pred CCceeEeeccCCchhHHHhHHhhhhheeeeeccccc------cc---CCCcceEEEEcccccCCCCCCCCCcceEeeee
Q 035595 80 EAALDAKGNFGNGSLIADFSVVIKMKILASLVDGEY------YN---NGHENFSFLVDGEYYSNCPAVSGSQNYVILAN 149 (178)
Q Consensus 80 ~~~~vLEvGCG~Gnta~pll~~~~~~i~AtD~s~k~------~~---~g~~N~~F~~~~~~~s~~p~~~~s~~~vil~n 149 (178)
+..+|||||||+|..++.++......++++|.+... .. ....++.+...+.. .+|+ ..+.|+|+..+
T Consensus 121 ~g~~VLDvGCG~G~~~~~~~~~g~~~v~GiDpS~~ml~q~~~~~~~~~~~~~v~~~~~~ie-~lp~--~~~FD~V~s~g 196 (314)
T TIGR00452 121 KGRTILDVGCGSGYHMWRMLGHGAKSLVGIDPTVLFLCQFEAVRKLLDNDKRAILEPLGIE-QLHE--LYAFDTVFSMG 196 (314)
T ss_pred CCCEEEEeccCCcHHHHHHHHcCCCEEEEEcCCHHHHHHHHHHHHHhccCCCeEEEECCHH-HCCC--CCCcCEEEEcc
Confidence 357999999999999999887654478999977321 10 11234556554432 3443 24788887654
No 112
>PRK00517 prmA ribosomal protein L11 methyltransferase; Reviewed
Probab=96.89 E-value=0.0011 Score=55.39 Aligned_cols=33 Identities=21% Similarity=0.138 Sum_probs=26.5
Q ss_pred CCceeEeeccCCchhHHHhHHhhhhheeeeecc
Q 035595 80 EAALDAKGNFGNGSLIADFSVVIKMKILASLVD 112 (178)
Q Consensus 80 ~~~~vLEvGCG~Gnta~pll~~~~~~i~AtD~s 112 (178)
+..+|||+|||+|..++.++.....+++|+|++
T Consensus 119 ~~~~VLDiGcGsG~l~i~~~~~g~~~v~giDis 151 (250)
T PRK00517 119 PGKTVLDVGCGSGILAIAAAKLGAKKVLAVDID 151 (250)
T ss_pred CCCEEEEeCCcHHHHHHHHHHcCCCeEEEEECC
Confidence 457999999999998887666543369999988
No 113
>COG0220 Predicted S-adenosylmethionine-dependent methyltransferase [General function prediction only]
Probab=96.89 E-value=0.0013 Score=56.16 Aligned_cols=50 Identities=14% Similarity=0.232 Sum_probs=41.7
Q ss_pred ceeEeeccCCchhHHHhHHhh-hhheeeeecc--------cccccCCCcceEEEEcccc
Q 035595 82 ALDAKGNFGNGSLIADFSVVI-KMKILASLVD--------GEYYNNGHENFSFLVDGEY 131 (178)
Q Consensus 82 ~~vLEvGCG~Gnta~pll~~~-~~~i~AtD~s--------~k~~~~g~~N~~F~~~~~~ 131 (178)
..+||||||.|....-++..+ ...++++++. +++.+.|+.|+...+.++.
T Consensus 50 pi~lEIGfG~G~~l~~~A~~nP~~nfiGiEi~~~~v~~~l~k~~~~~l~Nlri~~~DA~ 108 (227)
T COG0220 50 PIVLEIGFGMGEFLVEMAKKNPEKNFLGIEIRVPGVAKALKKIKELGLKNLRLLCGDAV 108 (227)
T ss_pred cEEEEECCCCCHHHHHHHHHCCCCCEEEEEEehHHHHHHHHHHHHcCCCcEEEEcCCHH
Confidence 468999999999999999875 4578888866 6777788889999987774
No 114
>PRK14901 16S rRNA methyltransferase B; Provisional
Probab=96.88 E-value=0.002 Score=58.41 Aligned_cols=70 Identities=10% Similarity=0.059 Sum_probs=50.1
Q ss_pred ccCCCceeEeeccCCchhHHHhHHhh--hhheeeeecc--------cccccCCCcceEEEEcccccCCCC---CCCCCcc
Q 035595 77 NCHEAALDAKGNFGNGSLIADFSVVI--KMKILASLVD--------GEYYNNGHENFSFLVDGEYYSNCP---AVSGSQN 143 (178)
Q Consensus 77 ~~~~~~~vLEvGCG~Gnta~pll~~~--~~~i~AtD~s--------~k~~~~g~~N~~F~~~~~~~s~~p---~~~~s~~ 143 (178)
...+..+|||+|||+|..++.|+... +.+++|+|++ +++...|+.|+.+..+... .++. -.+++.|
T Consensus 249 ~~~~g~~VLDl~ag~G~kt~~la~~~~~~g~v~a~D~~~~rl~~~~~n~~r~g~~~v~~~~~D~~-~~~~~~~~~~~~fD 327 (434)
T PRK14901 249 DPQPGEVILDACAAPGGKTTHIAELMGDQGEIWAVDRSASRLKKLQENAQRLGLKSIKILAADSR-NLLELKPQWRGYFD 327 (434)
T ss_pred CCCCcCEEEEeCCCCchhHHHHHHHhCCCceEEEEcCCHHHHHHHHHHHHHcCCCeEEEEeCChh-hcccccccccccCC
Confidence 33456899999999999999998864 3479999977 3445668888998886653 2221 1246777
Q ss_pred eEee
Q 035595 144 YVIL 147 (178)
Q Consensus 144 ~vil 147 (178)
.|++
T Consensus 328 ~Vl~ 331 (434)
T PRK14901 328 RILL 331 (434)
T ss_pred EEEE
Confidence 7765
No 115
>PRK05031 tRNA (uracil-5-)-methyltransferase; Validated
Probab=96.87 E-value=0.00095 Score=59.44 Aligned_cols=49 Identities=16% Similarity=0.179 Sum_probs=40.4
Q ss_pred ceeEeeccCCchhHHHhHHhhhhheeeeecc--------cccccCCCcceEEEEcccc
Q 035595 82 ALDAKGNFGNGSLIADFSVVIKMKILASLVD--------GEYYNNGHENFSFLVDGEY 131 (178)
Q Consensus 82 ~~vLEvGCG~Gnta~pll~~~~~~i~AtD~s--------~k~~~~g~~N~~F~~~~~~ 131 (178)
.+|||++||+|+.+++|+...+ +++|+|.+ +.+..+|+.|+.|......
T Consensus 208 ~~vLDl~~G~G~~sl~la~~~~-~v~~vE~~~~ai~~a~~N~~~~~~~~v~~~~~d~~ 264 (362)
T PRK05031 208 GDLLELYCGNGNFTLALARNFR-RVLATEISKPSVAAAQYNIAANGIDNVQIIRMSAE 264 (362)
T ss_pred CeEEEEeccccHHHHHHHhhCC-EEEEEECCHHHHHHHHHHHHHhCCCcEEEEECCHH
Confidence 5799999999999999999876 89999977 3334467888999887763
No 116
>PHA03411 putative methyltransferase; Provisional
Probab=96.82 E-value=0.0016 Score=57.74 Aligned_cols=80 Identities=16% Similarity=0.082 Sum_probs=48.5
Q ss_pred CCCcccccccc----cccCCCceeEeeccCCchhHHHhHHhh-hhheeeeeccccccc---CCCcceEEEEcccccCCCC
Q 035595 65 SGKFFKFTAEL----SNCHEAALDAKGNFGNGSLIADFSVVI-KMKILASLVDGEYYN---NGHENFSFLVDGEYYSNCP 136 (178)
Q Consensus 65 ~~~FFKdRPEL----~~~~~~~~vLEvGCG~Gnta~pll~~~-~~~i~AtD~s~k~~~---~g~~N~~F~~~~~~~s~~p 136 (178)
.+-||-.+.-+ .......+|||+|||+|..++.++... ..+++++|++.+... ....++.|.++... ...
T Consensus 45 ~G~FfTP~~i~~~f~~~~~~~grVLDLGcGsGilsl~la~r~~~~~V~gVDisp~al~~Ar~n~~~v~~v~~D~~-e~~- 122 (279)
T PHA03411 45 SGAFFTPEGLAWDFTIDAHCTGKVLDLCAGIGRLSFCMLHRCKPEKIVCVELNPEFARIGKRLLPEAEWITSDVF-EFE- 122 (279)
T ss_pred ceeEcCCHHHHHHHHhccccCCeEEEcCCCCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhCcCCEEEECchh-hhc-
Confidence 45677766221 122345689999999999888887753 358999998833322 12335677666553 211
Q ss_pred CCCCCcceEee
Q 035595 137 AVSGSQNYVIL 147 (178)
Q Consensus 137 ~~~~s~~~vil 147 (178)
..++.|+||.
T Consensus 123 -~~~kFDlIIs 132 (279)
T PHA03411 123 -SNEKFDVVIS 132 (279)
T ss_pred -ccCCCcEEEE
Confidence 1345666554
No 117
>PRK10901 16S rRNA methyltransferase B; Provisional
Probab=96.79 E-value=0.0028 Score=57.33 Aligned_cols=70 Identities=10% Similarity=0.042 Sum_probs=44.9
Q ss_pred ccccCCCceeEeeccCCchhHHHhHHhhh-hheeeeecc--------cccccCCCcceEEEEcccccCCCCCC-CCCcce
Q 035595 75 LSNCHEAALDAKGNFGNGSLIADFSVVIK-MKILASLVD--------GEYYNNGHENFSFLVDGEYYSNCPAV-SGSQNY 144 (178)
Q Consensus 75 L~~~~~~~~vLEvGCG~Gnta~pll~~~~-~~i~AtD~s--------~k~~~~g~~N~~F~~~~~~~s~~p~~-~~s~~~ 144 (178)
++...+..+|||+|||+|+.++.++.... ..++|+|++ +++...|.. +.|..+... .+++.+ +++.|.
T Consensus 239 ~l~~~~g~~VLDlgaG~G~~t~~la~~~~~~~v~a~D~s~~~l~~~~~n~~~~g~~-~~~~~~D~~-~~~~~~~~~~fD~ 316 (427)
T PRK10901 239 LLAPQNGERVLDACAAPGGKTAHILELAPQAQVVALDIDAQRLERVRENLQRLGLK-ATVIVGDAR-DPAQWWDGQPFDR 316 (427)
T ss_pred HcCCCCCCEEEEeCCCCChHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHHcCCC-eEEEEcCcc-cchhhcccCCCCE
Confidence 34445678999999999999999998653 489999977 233334543 466665443 222222 345665
Q ss_pred Ee
Q 035595 145 VI 146 (178)
Q Consensus 145 vi 146 (178)
|+
T Consensus 317 Vl 318 (427)
T PRK10901 317 IL 318 (427)
T ss_pred EE
Confidence 54
No 118
>PF05958 tRNA_U5-meth_tr: tRNA (Uracil-5-)-methyltransferase; InterPro: IPR010280 This family consists of (uracil-5-)-methyltransferases 2.1.1.35 from EC from bacteria, archaea and eukaryotes. A 5-methyluridine (m(5)U) residue at position 54 is a conserved feature of bacterial and eukaryotic tRNAs. The methylation of U54 is catalysed by the tRNA(m5U54)methyltransferase, which in Saccharomyces cerevisiae is encoded by the nonessential TRM2 gene. It is thought that tRNA modification enzymes might have a role in tRNA maturation not necessarily linked to their known catalytic activity []. This protein family also contains the 23SrRNA methyltransferases, first proposed to be RNA methyltransferases by homology to the TrmA family. The member from Escherichia coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA [].; GO: 0008173 RNA methyltransferase activity, 0006396 RNA processing; PDB: 2VS1_A 2JJQ_A 2BH2_A 1UWV_A 3BT7_B.
Probab=96.79 E-value=0.00037 Score=61.88 Aligned_cols=47 Identities=17% Similarity=0.147 Sum_probs=35.6
Q ss_pred eeEeeccCCchhHHHhHHhhhhheeeeecc--------cccccCCCcceEEEEccc
Q 035595 83 LDAKGNFGNGSLIADFSVVIKMKILASLVD--------GEYYNNGHENFSFLVDGE 130 (178)
Q Consensus 83 ~vLEvGCG~Gnta~pll~~~~~~i~AtD~s--------~k~~~~g~~N~~F~~~~~ 130 (178)
.|||+=||+|+.++||+...+ +++|+++. ..+..+|+.|+.|.....
T Consensus 199 ~vlDlycG~G~fsl~la~~~~-~V~gvE~~~~av~~A~~Na~~N~i~n~~f~~~~~ 253 (352)
T PF05958_consen 199 DVLDLYCGVGTFSLPLAKKAK-KVIGVEIVEEAVEDARENAKLNGIDNVEFIRGDA 253 (352)
T ss_dssp EEEEES-TTTCCHHHHHCCSS-EEEEEES-HHHHHHHHHHHHHTT--SEEEEE--S
T ss_pred cEEEEeecCCHHHHHHHhhCC-eEEEeeCCHHHHHHHHHHHHHcCCCcceEEEeec
Confidence 799999999999999999987 89998855 455677999999987543
No 119
>TIGR00446 nop2p NOL1/NOP2/sun family putative RNA methylase.
Probab=96.76 E-value=0.0021 Score=54.50 Aligned_cols=55 Identities=11% Similarity=-0.014 Sum_probs=42.0
Q ss_pred cccCCCceeEeeccCCchhHHHhHHhh--hhheeeeecc--------cccccCCCcceEEEEccc
Q 035595 76 SNCHEAALDAKGNFGNGSLIADFSVVI--KMKILASLVD--------GEYYNNGHENFSFLVDGE 130 (178)
Q Consensus 76 ~~~~~~~~vLEvGCG~Gnta~pll~~~--~~~i~AtD~s--------~k~~~~g~~N~~F~~~~~ 130 (178)
+...+..+|||+|||+|.-.+.|+... +..++|+|++ ++....|+.|+.+.....
T Consensus 67 l~~~~g~~VLDl~ag~G~kt~~la~~~~~~g~v~a~D~~~~~l~~~~~n~~~~g~~~v~~~~~D~ 131 (264)
T TIGR00446 67 LEPDPPERVLDMAAAPGGKTTQISALMKNEGAIVANEFSKSRTKVLIANINRCGVLNVAVTNFDG 131 (264)
T ss_pred hCCCCcCEEEEECCCchHHHHHHHHHcCCCCEEEEEcCCHHHHHHHHHHHHHcCCCcEEEecCCH
Confidence 344567899999999999999998864 3479999977 344556778888877654
No 120
>COG0030 KsgA Dimethyladenosine transferase (rRNA methylation) [Translation, ribosomal structure and biogenesis]
Probab=96.76 E-value=0.0031 Score=55.26 Aligned_cols=64 Identities=14% Similarity=0.100 Sum_probs=43.8
Q ss_pred CCccccc------ccccccCCCceeEeeccCCchhHHHhHHhhhhheeeeeccccc----ccC--CCcceEEEEccc
Q 035595 66 GKFFKFT------AELSNCHEAALDAKGNFGNGSLIADFSVVIKMKILASLVDGEY----YNN--GHENFSFLVDGE 130 (178)
Q Consensus 66 ~~FFKdR------PEL~~~~~~~~vLEvGCG~Gnta~pll~~~~~~i~AtD~s~k~----~~~--g~~N~~F~~~~~ 130 (178)
.||-.|. -+.....+.+.|||||+|.|+...+|++..+ +++|+-++.+. .+. ...|++....++
T Consensus 10 QnFL~d~~v~~kIv~~a~~~~~d~VlEIGpG~GaLT~~Ll~~~~-~v~aiEiD~~l~~~L~~~~~~~~n~~vi~~Da 85 (259)
T COG0030 10 QNFLIDKNVIDKIVEAANISPGDNVLEIGPGLGALTEPLLERAA-RVTAIEIDRRLAEVLKERFAPYDNLTVINGDA 85 (259)
T ss_pred cccccCHHHHHHHHHhcCCCCCCeEEEECCCCCHHHHHHHhhcC-eEEEEEeCHHHHHHHHHhcccccceEEEeCch
Confidence 3666666 2223344578999999999999999999986 78887655211 111 456777776665
No 121
>KOG3191 consensus Predicted N6-DNA-methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=96.71 E-value=0.0012 Score=56.77 Aligned_cols=62 Identities=13% Similarity=0.154 Sum_probs=37.4
Q ss_pred CceeEeeccCCchhHHHhHHhh--hhheeeeecccccccC-------CCcceEEEEcccccCCCCCC-CCCcceEe
Q 035595 81 AALDAKGNFGNGSLIADFSVVI--KMKILASLVDGEYYNN-------GHENFSFLVDGEYYSNCPAV-SGSQNYVI 146 (178)
Q Consensus 81 ~~~vLEvGCG~Gnta~pll~~~--~~~i~AtD~s~k~~~~-------g~~N~~F~~~~~~~s~~p~~-~~s~~~vi 146 (178)
+..+||||||+|-..--|+... ....+|||++-++.+. --.+++..++.. -.+| +++|||+|
T Consensus 44 ~~i~lEIG~GSGvvstfL~~~i~~~~~~latDiNp~A~~~Tl~TA~~n~~~~~~V~tdl----~~~l~~~~VDvLv 115 (209)
T KOG3191|consen 44 PEICLEIGCGSGVVSTFLASVIGPQALYLATDINPEALEATLETARCNRVHIDVVRTDL----LSGLRNESVDVLV 115 (209)
T ss_pred ceeEEEecCCcchHHHHHHHhcCCCceEEEecCCHHHHHHHHHHHHhcCCccceeehhH----HhhhccCCccEEE
Confidence 5568999999997766666544 2467999988444332 111244444433 2444 56666655
No 122
>PF06325 PrmA: Ribosomal protein L11 methyltransferase (PrmA); InterPro: IPR010456 This family consists of several Ribosomal protein L11 methyltransferase sequences. Its genetic determinant is prmA, which forms a bifunctional operon with the downstream panF gene []. The role of L11 methylation in ribosome function is, as yet, unknown. Deletion of the prmA gene in Escherichia coli showed no obvious effect [] except for the production of undermethylated forms of L11 []. Methylation is the most common post-transcriptional modification to ribosomal proteins in all organisms. PrmA is the only bacterial enzyme that catalyses the methylation of a ribosomal protein [].; GO: 0008276 protein methyltransferase activity, 0006479 protein methylation, 0005737 cytoplasm; PDB: 3GRZ_B 1F3L_A 2NXJ_B 3CJT_I 3CJQ_G 2NXE_A 2NXC_A 2ZBP_A 3EGV_A 3CJS_A ....
Probab=96.70 E-value=0.003 Score=55.83 Aligned_cols=64 Identities=23% Similarity=0.178 Sum_probs=39.5
Q ss_pred CceeEeeccCCchhHHHhHHhhhhheeeeecc--------cccccCCCcceEEEEcccccCCCCCCCCCcceEeeeeh
Q 035595 81 AALDAKGNFGNGSLIADFSVVIKMKILASLVD--------GEYYNNGHENFSFLVDGEYYSNCPAVSGSQNYVILANL 150 (178)
Q Consensus 81 ~~~vLEvGCG~Gnta~pll~~~~~~i~AtD~s--------~k~~~~g~~N~~F~~~~~~~s~~p~~~~s~~~vil~nl 150 (178)
..+||++|||+|=+++--+..-..+++|+|++ +.+..+|+.. .+...... ..+.+..|+| ++|+
T Consensus 162 g~~vLDvG~GSGILaiaA~klGA~~v~a~DiDp~Av~~a~~N~~~N~~~~-~~~v~~~~----~~~~~~~dlv-vANI 233 (295)
T PF06325_consen 162 GKRVLDVGCGSGILAIAAAKLGAKKVVAIDIDPLAVEAARENAELNGVED-RIEVSLSE----DLVEGKFDLV-VANI 233 (295)
T ss_dssp TSEEEEES-TTSHHHHHHHHTTBSEEEEEESSCHHHHHHHHHHHHTT-TT-CEEESCTS----CTCCS-EEEE-EEES
T ss_pred CCEEEEeCCcHHHHHHHHHHcCCCeEEEecCCHHHHHHHHHHHHHcCCCe-eEEEEEec----ccccccCCEE-EECC
Confidence 57999999999988887666544489999977 4445566666 44432111 1224666665 4775
No 123
>PRK14966 unknown domain/N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase fusion protein; Provisional
Probab=96.70 E-value=0.0029 Score=58.91 Aligned_cols=50 Identities=14% Similarity=0.048 Sum_probs=36.4
Q ss_pred CCceeEeeccCCchhHHHhHHh-hhhheeeeecc--------cccccCCCcceEEEEccc
Q 035595 80 EAALDAKGNFGNGSLIADFSVV-IKMKILASLVD--------GEYYNNGHENFSFLVDGE 130 (178)
Q Consensus 80 ~~~~vLEvGCG~Gnta~pll~~-~~~~i~AtD~s--------~k~~~~g~~N~~F~~~~~ 130 (178)
+..+|||+|||+|..++.++.. ...+++|+|++ +++...+. +++|..+..
T Consensus 251 ~~~rVLDLGcGSG~IaiaLA~~~p~a~VtAVDiS~~ALe~AreNa~~~g~-rV~fi~gDl 309 (423)
T PRK14966 251 ENGRVWDLGTGSGAVAVTVALERPDAFVRASDISPPALETARKNAADLGA-RVEFAHGSW 309 (423)
T ss_pred CCCEEEEEeChhhHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCC-cEEEEEcch
Confidence 3468999999999999999875 34589999987 22223343 688877554
No 124
>PRK09489 rsmC 16S ribosomal RNA m2G1207 methyltransferase; Provisional
Probab=96.64 E-value=0.0037 Score=55.78 Aligned_cols=62 Identities=19% Similarity=0.205 Sum_probs=41.6
Q ss_pred CceeEeeccCCchhHHHhHHhh-hhheeeeeccc--------ccccCCCcceEEEEcccccCCCCCCCCCcceEee
Q 035595 81 AALDAKGNFGNGSLIADFSVVI-KMKILASLVDG--------EYYNNGHENFSFLVDGEYYSNCPAVSGSQNYVIL 147 (178)
Q Consensus 81 ~~~vLEvGCG~Gnta~pll~~~-~~~i~AtD~s~--------k~~~~g~~N~~F~~~~~~~s~~p~~~~s~~~vil 147 (178)
..+|||+|||+|..+..++... ..+++++|++. ....++.. .+|...... +.+++..|++|.
T Consensus 197 ~g~VLDlGCG~G~ls~~la~~~p~~~v~~vDis~~Al~~A~~nl~~n~l~-~~~~~~D~~----~~~~~~fDlIvs 267 (342)
T PRK09489 197 KGKVLDVGCGAGVLSAVLARHSPKIRLTLSDVSAAALESSRATLAANGLE-GEVFASNVF----SDIKGRFDMIIS 267 (342)
T ss_pred CCeEEEeccCcCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCC-CEEEEcccc----cccCCCccEEEE
Confidence 4589999999999999999864 34799999872 22333433 344443222 234677888876
No 125
>PLN02781 Probable caffeoyl-CoA O-methyltransferase
Probab=96.57 E-value=0.0014 Score=54.97 Aligned_cols=53 Identities=13% Similarity=0.103 Sum_probs=38.9
Q ss_pred CCCceeEeeccCCchhHHHhHHhh--hhheeeeeccc--------ccccCCCc-ceEEEEcccc
Q 035595 79 HEAALDAKGNFGNGSLIADFSVVI--KMKILASLVDG--------EYYNNGHE-NFSFLVDGEY 131 (178)
Q Consensus 79 ~~~~~vLEvGCG~Gnta~pll~~~--~~~i~AtD~s~--------k~~~~g~~-N~~F~~~~~~ 131 (178)
.++.+|||+|||+|..++-|+... .-+++++|++. .....|+. ++++..+...
T Consensus 67 ~~~~~vLEiGt~~G~s~l~la~~~~~~g~v~tiD~d~~~~~~A~~n~~~~gl~~~i~~~~gda~ 130 (234)
T PLN02781 67 MNAKNTLEIGVFTGYSLLTTALALPEDGRITAIDIDKEAYEVGLEFIKKAGVDHKINFIQSDAL 130 (234)
T ss_pred hCCCEEEEecCcccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEccHH
Confidence 467899999999999999888754 34899999773 23444554 4777776653
No 126
>KOG4300 consensus Predicted methyltransferase [General function prediction only]
Probab=96.56 E-value=0.0018 Score=56.88 Aligned_cols=65 Identities=14% Similarity=0.061 Sum_probs=44.8
Q ss_pred CCCceeEeeccCCchhHHHhHHh-hhhheeeeecc--------cccccCCCcceE-EEEcccccCCCCCC-CCCcceEe
Q 035595 79 HEAALDAKGNFGNGSLIADFSVV-IKMKILASLVD--------GEYYNNGHENFS-FLVDGEYYSNCPAV-SGSQNYVI 146 (178)
Q Consensus 79 ~~~~~vLEvGCG~Gnta~pll~~-~~~~i~AtD~s--------~k~~~~g~~N~~-F~~~~~~~s~~p~~-~~s~~~vi 146 (178)
....-|||||||||.. |+..+- -.+.++..|-+ .++++..+.++. |+++... ++ |.| -+|+|+||
T Consensus 75 ~~K~~vLEvgcGtG~N-fkfy~~~p~~svt~lDpn~~mee~~~ks~~E~k~~~~~~fvva~ge-~l-~~l~d~s~DtVV 150 (252)
T KOG4300|consen 75 SGKGDVLEVGCGTGAN-FKFYPWKPINSVTCLDPNEKMEEIADKSAAEKKPLQVERFVVADGE-NL-PQLADGSYDTVV 150 (252)
T ss_pred cCccceEEecccCCCC-cccccCCCCceEEEeCCcHHHHHHHHHHHhhccCcceEEEEeechh-cC-cccccCCeeeEE
Confidence 4556789999999965 555552 12467777733 555666778877 8887654 44 445 78999887
No 127
>PF01135 PCMT: Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT); InterPro: IPR000682 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (2.1.1.77 from EC) (PCMT) [] (which is also known as L-isoaspartyl protein carboxyl methyltransferase) is an enzyme that catalyses the transfer of a methyl group from S-adenosylmethionine to the free carboxyl groups of D-aspartyl or L-isoaspartyl residues in a variety of peptides and proteins. The enzyme does not act on normal L-aspartyl residues L-isoaspartyl and D-aspartyl are the products of the spontaneous deamidation and/or isomerisation of normal L-aspartyl and L-asparaginyl residues in proteins. PCMT plays a role in the repair and/or degradation of these damaged proteins; the enzymatic methyl esterification of the abnormal residues can lead to their conversion to normal L-aspartyl residues. The SAM domain is present in most of these proteins.; GO: 0004719 protein-L-isoaspartate (D-aspartate) O-methyltransferase activity, 0006464 protein modification process; PDB: 3LBF_A 1DL5_B 1JG3_B 1JG2_A 1JG1_A 1JG4_A 2YXE_A 2PBF_B 1VBF_C 1R18_A ....
Probab=96.51 E-value=0.0035 Score=52.57 Aligned_cols=59 Identities=12% Similarity=0.047 Sum_probs=40.2
Q ss_pred cccCCCceeEeeccCCchhHHHhHHhhh--hheeeeecc--------cccccCCCcceEEEEcccccCC
Q 035595 76 SNCHEAALDAKGNFGNGSLIADFSVVIK--MKILASLVD--------GEYYNNGHENFSFLVDGEYYSN 134 (178)
Q Consensus 76 ~~~~~~~~vLEvGCG~Gnta~pll~~~~--~~i~AtD~s--------~k~~~~g~~N~~F~~~~~~~s~ 134 (178)
+...+.++|||||||+|-++.-|+.-+. ..++++++. ++....|..|+.|..+....+.
T Consensus 68 L~l~pg~~VLeIGtGsGY~aAlla~lvg~~g~Vv~vE~~~~l~~~A~~~l~~~~~~nv~~~~gdg~~g~ 136 (209)
T PF01135_consen 68 LDLKPGDRVLEIGTGSGYQAALLAHLVGPVGRVVSVERDPELAERARRNLARLGIDNVEVVVGDGSEGW 136 (209)
T ss_dssp TTC-TT-EEEEES-TTSHHHHHHHHHHSTTEEEEEEESBHHHHHHHHHHHHHHTTHSEEEEES-GGGTT
T ss_pred HhcCCCCEEEEecCCCcHHHHHHHHhcCccceEEEECccHHHHHHHHHHHHHhccCceeEEEcchhhcc
Confidence 3446789999999999999998887653 246777754 4455668889999997654333
No 128
>PRK04457 spermidine synthase; Provisional
Probab=96.50 E-value=0.0037 Score=53.38 Aligned_cols=67 Identities=12% Similarity=0.090 Sum_probs=44.2
Q ss_pred CCceeEeeccCCchhHHHhHHhh-hhheeeeecc--------cccccCC-CcceEEEEcccccCCCCCCCCCcceEee
Q 035595 80 EAALDAKGNFGNGSLIADFSVVI-KMKILASLVD--------GEYYNNG-HENFSFLVDGEYYSNCPAVSGSQNYVIL 147 (178)
Q Consensus 80 ~~~~vLEvGCG~Gnta~pll~~~-~~~i~AtD~s--------~k~~~~g-~~N~~F~~~~~~~s~~p~~~~s~~~vil 147 (178)
++.+||+||||+|+.+..++... ..+++++|++ +.....+ ..++.+..++...-+ ...++..|++++
T Consensus 66 ~~~~vL~IG~G~G~l~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~~~~~rv~v~~~Da~~~l-~~~~~~yD~I~~ 142 (262)
T PRK04457 66 RPQHILQIGLGGGSLAKFIYTYLPDTRQTAVEINPQVIAVARNHFELPENGERFEVIEADGAEYI-AVHRHSTDVILV 142 (262)
T ss_pred CCCEEEEECCCHhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHcCCCCCCCceEEEECCHHHHH-HhCCCCCCEEEE
Confidence 45789999999999999888764 4678999976 2222222 356888876552111 123456787765
No 129
>PF10294 Methyltransf_16: Putative methyltransferase; InterPro: IPR019410 There are a number of unidentified genes that have a high probability of coding for methyltransferases. They make up approximately 0.6-1.6% of the genes in the yeast, human, mouse, Drosophila melanogaster, Caenorhabditis elegans, Arabidopsis thaliana, and Escherichia coli genomes []. This entry represents putative nicotinamide N-methyltransferases involved in rDNA silencing and in lifespan determination. ; PDB: 3BZB_A.
Probab=96.35 E-value=0.0033 Score=50.35 Aligned_cols=33 Identities=6% Similarity=-0.087 Sum_probs=25.3
Q ss_pred CCceeEeeccCCchhHHHhHHh-hhhheeeeecc
Q 035595 80 EAALDAKGNFGNGSLIADFSVV-IKMKILASLVD 112 (178)
Q Consensus 80 ~~~~vLEvGCG~Gnta~pll~~-~~~~i~AtD~s 112 (178)
...+|||+|||+|=.++-++.. ....+++||..
T Consensus 45 ~~~~VLELGaG~Gl~gi~~a~~~~~~~Vv~TD~~ 78 (173)
T PF10294_consen 45 RGKRVLELGAGTGLPGIAAAKLFGAARVVLTDYN 78 (173)
T ss_dssp TTSEEEETT-TTSHHHHHHHHT-T-SEEEEEE-S
T ss_pred CCceEEEECCccchhHHHHHhccCCceEEEeccc
Confidence 4679999999999888888877 33589999966
No 130
>PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional
Probab=96.34 E-value=0.0028 Score=61.24 Aligned_cols=94 Identities=4% Similarity=-0.079 Sum_probs=57.3
Q ss_pred chHHHHHHHhhcCCCCcccccc---c-ccccCCCceeEeeccCCchhHHHhHHhhhhheeeeecc--------cccccCC
Q 035595 52 DSDAWKRFHSRHSSGKFFKFTA---E-LSNCHEAALDAKGNFGNGSLIADFSVVIKMKILASLVD--------GEYYNNG 119 (178)
Q Consensus 52 ~~~~Wd~Fy~rh~~~~FFKdRP---E-L~~~~~~~~vLEvGCG~Gnta~pll~~~~~~i~AtD~s--------~k~~~~g 119 (178)
.-+++-.++.-+.+ .||.|.. . +.......+|||+|||||..++.++..-..+++++|++ +.+..+|
T Consensus 507 g~~f~v~~~~~~~t-G~flDqr~~R~~~~~~~~g~rVLDlf~gtG~~sl~aa~~Ga~~V~~vD~s~~al~~a~~N~~~ng 585 (702)
T PRK11783 507 GAKLLVNLTDYLDT-GLFLDHRPTRRMIGQMAKGKDFLNLFAYTGTASVHAALGGAKSTTTVDMSNTYLEWAERNFALNG 585 (702)
T ss_pred CEEEEEEcCCCCcc-eECHHHHHHHHHHHHhcCCCeEEEcCCCCCHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhC
Confidence 44444455544443 5776652 1 11222467999999999999999998643379999977 3334456
Q ss_pred Cc--ceEEEEcccccCCCCCCCCCcceEee
Q 035595 120 HE--NFSFLVDGEYYSNCPAVSGSQNYVIL 147 (178)
Q Consensus 120 ~~--N~~F~~~~~~~s~~p~~~~s~~~vil 147 (178)
.. +++|.+++...-+. .+.+..|+||+
T Consensus 586 ~~~~~v~~i~~D~~~~l~-~~~~~fDlIil 614 (702)
T PRK11783 586 LSGRQHRLIQADCLAWLK-EAREQFDLIFI 614 (702)
T ss_pred CCccceEEEEccHHHHHH-HcCCCcCEEEE
Confidence 64 68888876531111 11345565554
No 131
>PRK15128 23S rRNA m(5)C1962 methyltransferase; Provisional
Probab=96.32 E-value=0.0021 Score=58.56 Aligned_cols=51 Identities=10% Similarity=-0.076 Sum_probs=37.1
Q ss_pred CCceeEeeccCCchhHHHhHHhhhhheeeeecc--------cccccCCCc--ceEEEEccc
Q 035595 80 EAALDAKGNFGNGSLIADFSVVIKMKILASLVD--------GEYYNNGHE--NFSFLVDGE 130 (178)
Q Consensus 80 ~~~~vLEvGCG~Gnta~pll~~~~~~i~AtD~s--------~k~~~~g~~--N~~F~~~~~ 130 (178)
...+|||+|||||..++..+..-..+++++|++ +.+..+|+. +++|..++.
T Consensus 220 ~g~rVLDlfsgtG~~~l~aa~~ga~~V~~VD~s~~al~~a~~N~~~Ngl~~~~v~~i~~D~ 280 (396)
T PRK15128 220 ENKRVLNCFSYTGGFAVSALMGGCSQVVSVDTSQEALDIARQNVELNKLDLSKAEFVRDDV 280 (396)
T ss_pred CCCeEEEeccCCCHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCCCcEEEEEccH
Confidence 467999999999998887554433489999977 233445653 688888765
No 132
>COG1352 CheR Methylase of chemotaxis methyl-accepting proteins [Cell motility and secretion / Signal transduction mechanisms]
Probab=96.32 E-value=0.015 Score=51.08 Aligned_cols=59 Identities=24% Similarity=0.279 Sum_probs=42.4
Q ss_pred hHHHHHHHh---hcCCCCccccc-----------ccccccC--CCceeEeeccCCc----hhHHHhHHhh------hhhe
Q 035595 53 SDAWKRFHS---RHSSGKFFKFT-----------AELSNCH--EAALDAKGNFGNG----SLIADFSVVI------KMKI 106 (178)
Q Consensus 53 ~~~Wd~Fy~---rh~~~~FFKdR-----------PEL~~~~--~~~~vLEvGCG~G----nta~pll~~~------~~~i 106 (178)
+.-|+.|.. .|. +.||-|+ |+|.... ...+|...||+|| |.|+-|++.. ...|
T Consensus 54 ~~e~~~~l~~ltin~-T~FFR~~~~f~~l~~~v~p~l~~~~~~~~irIWSaaCStGEEpYSiAm~l~e~~~~~~~~~~~I 132 (268)
T COG1352 54 SEELQAFLDALTINV-TEFFRDPEHFEELRDEVLPELVKRKKGRPIRIWSAACSTGEEPYSLAMLLLEALGKLAGFRVKI 132 (268)
T ss_pred HHHHHHHHHHhhhcc-chhccCcHHHHHHHHHHHHHHHhhccCCceEEEecCcCCCccHHHHHHHHHHHhccccCCceEE
Confidence 445666553 444 4899988 7776543 4789999999999 6666666644 4688
Q ss_pred eeeecc
Q 035595 107 LASLVD 112 (178)
Q Consensus 107 ~AtD~s 112 (178)
+|||++
T Consensus 133 ~AtDId 138 (268)
T COG1352 133 LATDID 138 (268)
T ss_pred EEEECC
Confidence 999977
No 133
>COG2265 TrmA SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=96.29 E-value=0.0025 Score=59.02 Aligned_cols=65 Identities=15% Similarity=0.194 Sum_probs=51.7
Q ss_pred CCcccccccc-----------cccCCCceeEeeccCCchhHHHhHHhhhhheeeeecc--------cccccCCCcceEEE
Q 035595 66 GKFFKFTAEL-----------SNCHEAALDAKGNFGNGSLIADFSVVIKMKILASLVD--------GEYYNNGHENFSFL 126 (178)
Q Consensus 66 ~~FFKdRPEL-----------~~~~~~~~vLEvGCG~Gnta~pll~~~~~~i~AtD~s--------~k~~~~g~~N~~F~ 126 (178)
+-||--+|.. +...+..+|||+=||+|+++++|+..++ ++++++++ ..+..+|..|+.|.
T Consensus 268 ~sF~Q~N~~~~ekl~~~a~~~~~~~~~~~vlDlYCGvG~f~l~lA~~~~-~V~gvEi~~~aV~~A~~NA~~n~i~N~~f~ 346 (432)
T COG2265 268 RSFFQVNPAVAEKLYETALEWLELAGGERVLDLYCGVGTFGLPLAKRVK-KVHGVEISPEAVEAAQENAAANGIDNVEFI 346 (432)
T ss_pred CCceecCHHHHHHHHHHHHHHHhhcCCCEEEEeccCCChhhhhhcccCC-EEEEEecCHHHHHHHHHHHHHcCCCcEEEE
Confidence 4688877322 2334678999999999999999998886 89999866 56678899999999
Q ss_pred Ecccc
Q 035595 127 VDGEY 131 (178)
Q Consensus 127 ~~~~~ 131 (178)
+..+.
T Consensus 347 ~~~ae 351 (432)
T COG2265 347 AGDAE 351 (432)
T ss_pred eCCHH
Confidence 87764
No 134
>TIGR00478 tly hemolysin TlyA family protein. Hemolysins are exotoxins that attack blood cell membranes and cause cell rupture, often by forming a pore in the membrane. At least two members of this protein family have been characterized indirectly as pore-forming hemolysins, one from the spirochete Serpula (Treponema) hyodysenteriae and one from Mycobacterium tuberculosis. However, homology domains in this protein suggest methyltransferase activity (pfam01728) and RNA-binding activity (pfam01479).
Probab=96.24 E-value=0.0039 Score=53.14 Aligned_cols=33 Identities=6% Similarity=-0.106 Sum_probs=28.6
Q ss_pred CCceeEeeccCCchhHHHhHHhhhhheeeeecc
Q 035595 80 EAALDAKGNFGNGSLIADFSVVIKMKILASLVD 112 (178)
Q Consensus 80 ~~~~vLEvGCG~Gnta~pll~~~~~~i~AtD~s 112 (178)
...+||++|||||....+++..-.-+++|+|++
T Consensus 75 ~~~~vlDiG~gtG~~t~~l~~~ga~~v~avD~~ 107 (228)
T TIGR00478 75 KNKIVLDVGSSTGGFTDCALQKGAKEVYGVDVG 107 (228)
T ss_pred CCCEEEEcccCCCHHHHHHHHcCCCEEEEEeCC
Confidence 456899999999999999999733489999987
No 135
>PRK13256 thiopurine S-methyltransferase; Reviewed
Probab=96.21 E-value=0.019 Score=49.14 Aligned_cols=60 Identities=12% Similarity=0.081 Sum_probs=45.3
Q ss_pred cchHHHHHHHhhcCCCCccccc--cccc------ccCCCceeEeeccCCchhHHHhHHhhhhheeeeecc
Q 035595 51 KDSDAWKRFHSRHSSGKFFKFT--AELS------NCHEAALDAKGNFGNGSLIADFSVVIKMKILASLVD 112 (178)
Q Consensus 51 ~~~~~Wd~Fy~rh~~~~FFKdR--PEL~------~~~~~~~vLEvGCG~Gnta~pll~~~~~~i~AtD~s 112 (178)
.+.+.|+.-|..+. ..|-... |-|. ...+..+||..|||.|--+.-|+..- ..++|+|+|
T Consensus 7 ~~~~fW~~rw~~~~-~~f~~~~pnp~L~~~~~~l~~~~~~rvLvPgCGkg~D~~~LA~~G-~~V~GvDlS 74 (226)
T PRK13256 7 NNNQYWLDRWQNDD-VGFCQESPNEFLVKHFSKLNINDSSVCLIPMCGCSIDMLFFLSKG-VKVIGIELS 74 (226)
T ss_pred CCHHHHHHHHhcCC-CCCccCCCCHHHHHHHHhcCCCCCCeEEEeCCCChHHHHHHHhCC-CcEEEEecC
Confidence 35679999998886 4665555 3331 11245799999999999999998865 589999988
No 136
>COG4123 Predicted O-methyltransferase [General function prediction only]
Probab=96.18 E-value=0.0027 Score=55.43 Aligned_cols=66 Identities=18% Similarity=0.082 Sum_probs=44.4
Q ss_pred CCceeEeeccCCchhHHHhHHh-hhhheeeeecccccccCCCcc---------eEEEEcccccCCCCCC-CCCcceEe
Q 035595 80 EAALDAKGNFGNGSLIADFSVV-IKMKILASLVDGEYYNNGHEN---------FSFLVDGEYYSNCPAV-SGSQNYVI 146 (178)
Q Consensus 80 ~~~~vLEvGCG~Gnta~pll~~-~~~~i~AtD~s~k~~~~g~~N---------~~F~~~~~~~s~~p~~-~~s~~~vi 146 (178)
...+|||+|||+|-.++-++.. .+.+++++++++++++-.-.| ++|..++.. -.++.. ..+.|+||
T Consensus 44 ~~~~IlDlGaG~G~l~L~la~r~~~a~I~~VEiq~~~a~~A~~nv~ln~l~~ri~v~~~Di~-~~~~~~~~~~fD~Ii 120 (248)
T COG4123 44 KKGRILDLGAGNGALGLLLAQRTEKAKIVGVEIQEEAAEMAQRNVALNPLEERIQVIEADIK-EFLKALVFASFDLII 120 (248)
T ss_pred cCCeEEEecCCcCHHHHHHhccCCCCcEEEEEeCHHHHHHHHHHHHhCcchhceeEehhhHH-HhhhcccccccCEEE
Confidence 4689999999999988888876 346899999886655544433 666665553 223333 33566555
No 137
>PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed
Probab=96.13 E-value=0.0046 Score=57.74 Aligned_cols=50 Identities=12% Similarity=0.040 Sum_probs=40.0
Q ss_pred CceeEeeccCCchhHHHhHHhh-hhheeeeecc--------cccccCCCcceEEEEccc
Q 035595 81 AALDAKGNFGNGSLIADFSVVI-KMKILASLVD--------GEYYNNGHENFSFLVDGE 130 (178)
Q Consensus 81 ~~~vLEvGCG~Gnta~pll~~~-~~~i~AtD~s--------~k~~~~g~~N~~F~~~~~ 130 (178)
...+||||||.|..++-++... ...+++++++ .+....|..|+.+.....
T Consensus 348 ~p~~lEIG~G~G~~~~~~A~~~p~~~~iGiE~~~~~~~~~~~~~~~~~l~N~~~~~~~~ 406 (506)
T PRK01544 348 RKVFLEIGFGMGEHFINQAKMNPDALFIGVEVYLNGVANVLKLAGEQNITNFLLFPNNL 406 (506)
T ss_pred CceEEEECCCchHHHHHHHHhCCCCCEEEEEeeHHHHHHHHHHHHHcCCCeEEEEcCCH
Confidence 5689999999999999999875 4578899976 455677899998876543
No 138
>PHA03412 putative methyltransferase; Provisional
Probab=96.11 E-value=0.0065 Score=52.98 Aligned_cols=63 Identities=13% Similarity=0.142 Sum_probs=39.7
Q ss_pred CceeEeeccCCchhHHHhHHhh----hhheeeeecccccccCCC---cceEEEEcccccCCCCCCCCCcceEe
Q 035595 81 AALDAKGNFGNGSLIADFSVVI----KMKILASLVDGEYYNNGH---ENFSFLVDGEYYSNCPAVSGSQNYVI 146 (178)
Q Consensus 81 ~~~vLEvGCG~Gnta~pll~~~----~~~i~AtD~s~k~~~~g~---~N~~F~~~~~~~s~~p~~~~s~~~vi 146 (178)
..+|||+|||+|..++-++... ...++|+|++..+..... .++.|..++... .+ +.++.|+||
T Consensus 50 ~grVLDlG~GSG~Lalala~~~~~~~~~~V~aVEID~~Al~~Ar~n~~~~~~~~~D~~~-~~--~~~~FDlII 119 (241)
T PHA03412 50 SGSVVDLCAGIGGLSFAMVHMMMYAKPREIVCVELNHTYYKLGKRIVPEATWINADALT-TE--FDTLFDMAI 119 (241)
T ss_pred CCEEEEccChHHHHHHHHHHhcccCCCcEEEEEECCHHHHHHHHhhccCCEEEEcchhc-cc--ccCCccEEE
Confidence 5699999999999999887641 247999998844433322 335666655431 11 234566555
No 139
>TIGR00563 rsmB ribosomal RNA small subunit methyltransferase RsmB. The seed alignment is built from bacterial sequences only. Eukaryotic homologs include Nop2, a protein required for processing pre-rRNA, that is likely also a rRNA methyltransferase, although the fine specificity may differ. Cutoff scores are set to avoid treating archaeal and eukaroytic homologs automatically as functionally equivalent, although they may have very similar roles.
Probab=95.97 E-value=0.018 Score=52.14 Aligned_cols=36 Identities=6% Similarity=-0.005 Sum_probs=29.6
Q ss_pred ccCCCceeEeeccCCchhHHHhHHhh-hhheeeeecc
Q 035595 77 NCHEAALDAKGNFGNGSLIADFSVVI-KMKILASLVD 112 (178)
Q Consensus 77 ~~~~~~~vLEvGCG~Gnta~pll~~~-~~~i~AtD~s 112 (178)
...+..+|||+|||+|..+..++... ..+++|+|++
T Consensus 235 ~~~~g~~VLDlcag~G~kt~~la~~~~~~~v~a~D~~ 271 (426)
T TIGR00563 235 APQNEETILDACAAPGGKTTHILELAPQAQVVALDIH 271 (426)
T ss_pred CCCCCCeEEEeCCCccHHHHHHHHHcCCCeEEEEeCC
Confidence 33456899999999999999888764 2589999987
No 140
>COG2264 PrmA Ribosomal protein L11 methylase [Translation, ribosomal structure and biogenesis]
Probab=95.92 E-value=0.0081 Score=53.81 Aligned_cols=33 Identities=15% Similarity=0.114 Sum_probs=27.3
Q ss_pred CCceeEeeccCCchhHHHhHHhhhhheeeeecc
Q 035595 80 EAALDAKGNFGNGSLIADFSVVIKMKILASLVD 112 (178)
Q Consensus 80 ~~~~vLEvGCG~Gnta~pll~~~~~~i~AtD~s 112 (178)
+..+||++|||+|=.++-.+.--..+++|+|++
T Consensus 162 ~g~~vlDvGcGSGILaIAa~kLGA~~v~g~DiD 194 (300)
T COG2264 162 KGKTVLDVGCGSGILAIAAAKLGAKKVVGVDID 194 (300)
T ss_pred CCCEEEEecCChhHHHHHHHHcCCceEEEecCC
Confidence 357999999999998888777554589999977
No 141
>PF03848 TehB: Tellurite resistance protein TehB; InterPro: IPR015985 Tellurite resistance protein TehB is part of a tellurite-reducing operon tehA and tehB. When present in high copy number, TehB is responsible for potassium tellurite resistance, probably by increasing the reduction rate of tellurite to metallic tellurium within the bacterium. TehB is a cytoplasmic protein which possesses three conserved motifs (I, II, and III) found in S-adenosyl-L-methionine (SAM)-dependent non-nucleic acid methyltransferases []. Conformational changes in TehB are observed upon binding of both tellurite and SAM, suggesting that TehB utilises a methyltransferase activity in the detoxification of tellurite. This entry represents the methyltransferase domain found in all TehB proteins.; PDB: 2KW5_A 3MER_B 3M70_A 2I6G_A 4DQ0_D 2XVA_B 2XVM_A.
Probab=95.86 E-value=0.018 Score=48.35 Aligned_cols=63 Identities=8% Similarity=0.020 Sum_probs=39.1
Q ss_pred CCCceeEeeccCCchhHHHhHHhhhhheeeeecc--------cccccCCCcceEEEEcccccCCCCCCCCCcceEe
Q 035595 79 HEAALDAKGNFGNGSLIADFSVVIKMKILASLVD--------GEYYNNGHENFSFLVDGEYYSNCPAVSGSQNYVI 146 (178)
Q Consensus 79 ~~~~~vLEvGCG~Gnta~pll~~~~~~i~AtD~s--------~k~~~~g~~N~~F~~~~~~~s~~p~~~~s~~~vi 146 (178)
.++.++|++|||.|--++-|+..- ..++|.|.+ +-+...++. ++....+.. . -.+++..|+++
T Consensus 29 ~~~g~~LDlgcG~GRNalyLA~~G-~~VtAvD~s~~al~~l~~~a~~~~l~-i~~~~~Dl~-~--~~~~~~yD~I~ 99 (192)
T PF03848_consen 29 LKPGKALDLGCGEGRNALYLASQG-FDVTAVDISPVALEKLQRLAEEEGLD-IRTRVADLN-D--FDFPEEYDFIV 99 (192)
T ss_dssp S-SSEEEEES-TTSHHHHHHHHTT--EEEEEESSHHHHHHHHHHHHHTT-T-EEEEE-BGC-C--BS-TTTEEEEE
T ss_pred cCCCcEEEcCCCCcHHHHHHHHCC-CeEEEEECCHHHHHHHHHHHhhcCce-eEEEEecch-h--ccccCCcCEEE
Confidence 367899999999999999999876 589999987 222233443 555554432 1 12356677764
No 142
>PLN02672 methionine S-methyltransferase
Probab=95.84 E-value=0.011 Score=60.72 Aligned_cols=31 Identities=16% Similarity=0.094 Sum_probs=27.2
Q ss_pred ceeEeeccCCchhHHHhHHhh-hhheeeeecc
Q 035595 82 ALDAKGNFGNGSLIADFSVVI-KMKILASLVD 112 (178)
Q Consensus 82 ~~vLEvGCG~Gnta~pll~~~-~~~i~AtD~s 112 (178)
.+|||+|||+|-.++.|+... ..+++|+|++
T Consensus 120 ~~VLDlG~GSG~Iai~La~~~~~~~v~avDis 151 (1082)
T PLN02672 120 KTVAELGCGNGWISIAIAEKWLPSKVYGLDIN 151 (1082)
T ss_pred CEEEEEecchHHHHHHHHHHCCCCEEEEEECC
Confidence 589999999999999999864 2489999988
No 143
>PF06080 DUF938: Protein of unknown function (DUF938); InterPro: IPR010342 This family consists of several hypothetical proteins from both prokaryotes and eukaryotes. The function of this family is unknown.
Probab=95.75 E-value=0.0097 Score=50.71 Aligned_cols=69 Identities=13% Similarity=0.007 Sum_probs=44.8
Q ss_pred eeEeeccCCchhHHHhHHhh-hhheeeeecc--------cccccCCCcce------EEEEcccccCCCCC-CCCCcceEe
Q 035595 83 LDAKGNFGNGSLIADFSVVI-KMKILASLVD--------GEYYNNGHENF------SFLVDGEYYSNCPA-VSGSQNYVI 146 (178)
Q Consensus 83 ~vLEvGCG~Gnta~pll~~~-~~~i~AtD~s--------~k~~~~g~~N~------~F~~~~~~~s~~p~-~~~s~~~vi 146 (178)
+|||||||||--+.-+++.. ...+.-+|.. ......|..|+ ++.........+.. ..++.|.|+
T Consensus 28 ~vLEiaSGtGqHa~~FA~~lP~l~WqPSD~~~~~~~sI~a~~~~~~~~Nv~~P~~lDv~~~~w~~~~~~~~~~~~~D~i~ 107 (204)
T PF06080_consen 28 RVLEIASGTGQHAVYFAQALPHLTWQPSDPDDNLRPSIRAWIAEAGLPNVRPPLALDVSAPPWPWELPAPLSPESFDAIF 107 (204)
T ss_pred eEEEEcCCccHHHHHHHHHCCCCEEcCCCCChHHHhhHHHHHHhcCCcccCCCeEeecCCCCCccccccccCCCCcceee
Confidence 59999999999999888764 4566677755 22356677773 22222111111212 378999999
Q ss_pred eeehh
Q 035595 147 LANLK 151 (178)
Q Consensus 147 l~nl~ 151 (178)
-+|+-
T Consensus 108 ~~N~l 112 (204)
T PF06080_consen 108 CINML 112 (204)
T ss_pred ehhHH
Confidence 99974
No 144
>PF05724 TPMT: Thiopurine S-methyltransferase (TPMT); InterPro: IPR008854 This family consists of thiopurine S-methyltransferase proteins from both eukaryotes and prokaryotes. Thiopurine S-methyltransferase (TPMT) is a cytosolic enzyme that catalyses S-methylation of aromatic and heterocyclic sulphydryl compounds, including anticancer and immunosuppressive thiopurines [].; GO: 0008119 thiopurine S-methyltransferase activity, 0008152 metabolic process, 0005737 cytoplasm; PDB: 1PJZ_A 2H11_A 2BZG_A 3LCC_A 3BGD_A 2GB4_A 3BGI_B.
Probab=95.69 E-value=0.018 Score=48.35 Aligned_cols=58 Identities=7% Similarity=0.014 Sum_probs=42.7
Q ss_pred hHHHHHHHhhcCCCCccccc--cccc---c---cCCCceeEeeccCCchhHHHhHHhhhhheeeeecc
Q 035595 53 SDAWKRFHSRHSSGKFFKFT--AELS---N---CHEAALDAKGNFGNGSLIADFSVVIKMKILASLVD 112 (178)
Q Consensus 53 ~~~Wd~Fy~rh~~~~FFKdR--PEL~---~---~~~~~~vLEvGCG~Gnta~pll~~~~~~i~AtD~s 112 (178)
.+.|+.-|..+. ..|-..+ |.|. . ..+..+||-.|||.|--+.-|+..- ..++++|++
T Consensus 3 ~~~W~~~w~~~~-~~w~~~~~~p~L~~~~~~l~~~~~~rvLvPgCG~g~D~~~La~~G-~~VvGvDls 68 (218)
T PF05724_consen 3 PEFWEERWQEGQ-TPWDQGEPNPALVEYLDSLALKPGGRVLVPGCGKGYDMLWLAEQG-HDVVGVDLS 68 (218)
T ss_dssp HHHHHHHHHTT---TT--TTSTHHHHHHHHHHTTSTSEEEEETTTTTSCHHHHHHHTT-EEEEEEES-
T ss_pred HHHHHHHHhcCC-CCCCCCCCCHHHHHHHHhcCCCCCCeEEEeCCCChHHHHHHHHCC-CeEEEEecC
Confidence 579999998876 5787777 4442 2 3456799999999999999998864 589999987
No 145
>COG2813 RsmC 16S RNA G1207 methylase RsmC [Translation, ribosomal structure and biogenesis]
Probab=95.64 E-value=0.049 Score=49.03 Aligned_cols=43 Identities=21% Similarity=0.083 Sum_probs=33.1
Q ss_pred CceeEeeccCCchhHHHhHHhh-hhheeeeecc--------cccccCCCcce
Q 035595 81 AALDAKGNFGNGSLIADFSVVI-KMKILASLVD--------GEYYNNGHENF 123 (178)
Q Consensus 81 ~~~vLEvGCG~Gnta~pll~~~-~~~i~AtD~s--------~k~~~~g~~N~ 123 (178)
..+||++|||.|=.++-++..+ ..+++=+|++ ..+..++++|.
T Consensus 159 ~~~vlDlGCG~Gvlg~~la~~~p~~~vtmvDvn~~Av~~ar~Nl~~N~~~~~ 210 (300)
T COG2813 159 GGKVLDLGCGYGVLGLVLAKKSPQAKLTLVDVNARAVESARKNLAANGVENT 210 (300)
T ss_pred CCcEEEeCCCccHHHHHHHHhCCCCeEEEEecCHHHHHHHHHhHHHcCCCcc
Confidence 4499999999999999999876 3466667766 34456777774
No 146
>KOG2187 consensus tRNA uracil-5-methyltransferase and related tRNA-modifying enzymes [Translation, ribosomal structure and biogenesis]
Probab=95.63 E-value=0.014 Score=56.15 Aligned_cols=75 Identities=15% Similarity=0.131 Sum_probs=54.6
Q ss_pred cccccCCCceeEeeccCCchhHHHhHHhhhhheee--------eecccccccCCCcceEEEEcccccCCCCCC-C--CCc
Q 035595 74 ELSNCHEAALDAKGNFGNGSLIADFSVVIKMKILA--------SLVDGEYYNNGHENFSFLVDGEYYSNCPAV-S--GSQ 142 (178)
Q Consensus 74 EL~~~~~~~~vLEvGCG~Gnta~pll~~~~~~i~A--------tD~s~k~~~~g~~N~~F~~~~~~~s~~p~~-~--~s~ 142 (178)
|.+.......+|++=||||..++-++..++ ++++ .|++..+..+|++|.+|.++-+..-+++-+ + ++.
T Consensus 377 e~~~l~~~k~llDv~CGTG~iglala~~~~-~ViGvEi~~~aV~dA~~nA~~NgisNa~Fi~gqaE~~~~sl~~~~~~~~ 455 (534)
T KOG2187|consen 377 EWAGLPADKTLLDVCCGTGTIGLALARGVK-RVIGVEISPDAVEDAEKNAQINGISNATFIVGQAEDLFPSLLTPCCDSE 455 (534)
T ss_pred HHhCCCCCcEEEEEeecCCceehhhhcccc-ceeeeecChhhcchhhhcchhcCccceeeeecchhhccchhcccCCCCC
Confidence 444445678999999999999999999886 5544 345578889999999999984432555555 3 477
Q ss_pred ceEeeee
Q 035595 143 NYVILAN 149 (178)
Q Consensus 143 ~~vil~n 149 (178)
++|.+++
T Consensus 456 ~~v~iiD 462 (534)
T KOG2187|consen 456 TLVAIID 462 (534)
T ss_pred ceEEEEC
Confidence 7555443
No 147
>PRK04148 hypothetical protein; Provisional
Probab=95.58 E-value=0.01 Score=47.55 Aligned_cols=49 Identities=6% Similarity=-0.009 Sum_probs=31.6
Q ss_pred CceeEeeccCCch-hHHHhHHhhhhheeeeecccccccC-CCcceEEEEccc
Q 035595 81 AALDAKGNFGNGS-LIADFSVVIKMKILASLVDGEYYNN-GHENFSFLVDGE 130 (178)
Q Consensus 81 ~~~vLEvGCG~Gn-ta~pll~~~~~~i~AtD~s~k~~~~-g~~N~~F~~~~~ 130 (178)
..+|||||||.|. .+.-|.. ....++|+|++.++-+. ....+.+.+++.
T Consensus 17 ~~kileIG~GfG~~vA~~L~~-~G~~ViaIDi~~~aV~~a~~~~~~~v~dDl 67 (134)
T PRK04148 17 NKKIVELGIGFYFKVAKKLKE-SGFDVIVIDINEKAVEKAKKLGLNAFVDDL 67 (134)
T ss_pred CCEEEEEEecCCHHHHHHHHH-CCCEEEEEECCHHHHHHHHHhCCeEEECcC
Confidence 3689999999996 5555554 44589999998553221 111255666554
No 148
>KOG1499 consensus Protein arginine N-methyltransferase PRMT1 and related enzymes [Posttranslational modification, protein turnover, chaperones; Transcription; Signal transduction mechanisms]
Probab=95.50 E-value=0.019 Score=52.61 Aligned_cols=63 Identities=13% Similarity=0.008 Sum_probs=43.5
Q ss_pred CceeEeeccCCchhHHHhHHhhhhheeeeecc-------cccccCCCcc-eEEEEccc-ccCCCCCCCCCcceEe
Q 035595 81 AALDAKGNFGNGSLIADFSVVIKMKILASLVD-------GEYYNNGHEN-FSFLVDGE-YYSNCPAVSGSQNYVI 146 (178)
Q Consensus 81 ~~~vLEvGCG~Gnta~pll~~~~~~i~AtD~s-------~k~~~~g~~N-~~F~~~~~-~~s~~p~~~~s~~~vi 146 (178)
...||+||||||=.-+-=+..-.-+++|++.+ +-...+|.++ |++..+-. +..|| .+.||+.|
T Consensus 61 dK~VlDVGcGtGILS~F~akAGA~~V~aVe~S~ia~~a~~iv~~N~~~~ii~vi~gkvEdi~LP---~eKVDiIv 132 (346)
T KOG1499|consen 61 DKTVLDVGCGTGILSMFAAKAGARKVYAVEASSIADFARKIVKDNGLEDVITVIKGKVEDIELP---VEKVDIIV 132 (346)
T ss_pred CCEEEEcCCCccHHHHHHHHhCcceEEEEechHHHHHHHHHHHhcCccceEEEeecceEEEecC---ccceeEEe
Confidence 56899999999987766666544589999977 2234556666 77766433 44666 56777665
No 149
>PLN03075 nicotianamine synthase; Provisional
Probab=95.49 E-value=0.036 Score=49.45 Aligned_cols=68 Identities=10% Similarity=-0.090 Sum_probs=45.1
Q ss_pred CCceeEeeccCCc-hhHHHhHH-h-hhhheeeeeccc-------ccc--cCCCcc-eEEEEcccccCCCCCCCCCcceEe
Q 035595 80 EAALDAKGNFGNG-SLIADFSV-V-IKMKILASLVDG-------EYY--NNGHEN-FSFLVDGEYYSNCPAVSGSQNYVI 146 (178)
Q Consensus 80 ~~~~vLEvGCG~G-nta~pll~-~-~~~~i~AtD~s~-------k~~--~~g~~N-~~F~~~~~~~s~~p~~~~s~~~vi 146 (178)
++.+|||||||.| -|++=++. . .+.+++.+|.+. +.. ..|+.+ ++|...+.. ..++. .+.-|+|.
T Consensus 123 ~p~~VldIGcGpgpltaiilaa~~~p~~~~~giD~d~~ai~~Ar~~~~~~~gL~~rV~F~~~Da~-~~~~~-l~~FDlVF 200 (296)
T PLN03075 123 VPTKVAFVGSGPLPLTSIVLAKHHLPTTSFHNFDIDPSANDVARRLVSSDPDLSKRMFFHTADVM-DVTES-LKEYDVVF 200 (296)
T ss_pred CCCEEEEECCCCcHHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHhhhccCccCCcEEEECchh-hcccc-cCCcCEEE
Confidence 7789999999966 44444443 2 234688999772 222 367765 999998775 33333 45689888
Q ss_pred eee
Q 035595 147 LAN 149 (178)
Q Consensus 147 l~n 149 (178)
+.-
T Consensus 201 ~~A 203 (296)
T PLN03075 201 LAA 203 (296)
T ss_pred Eec
Confidence 873
No 150
>TIGR01444 fkbM_fam methyltransferase, FkbM family. Members of this family are characterized by two well-conserved short regions separated by a variable in both sequence and length. The first of the two regions is found in a large number of proteins outside this subfamily, a number of which have been characterized as methyltransferases. One member of the present family, FkbM, was shown to be required for a specific methylation in the biosynthesis of the immunosuppressant FK506 in Streptomyces strain MA6548.
Probab=95.46 E-value=0.018 Score=42.86 Aligned_cols=47 Identities=13% Similarity=-0.074 Sum_probs=33.5
Q ss_pred eeEeeccCCchhHHHhHHhhh-hheeeeecc--------cccccCCCcceEEEEcc
Q 035595 83 LDAKGNFGNGSLIADFSVVIK-MKILASLVD--------GEYYNNGHENFSFLVDG 129 (178)
Q Consensus 83 ~vLEvGCG~Gnta~pll~~~~-~~i~AtD~s--------~k~~~~g~~N~~F~~~~ 129 (178)
++|++|||+|..++.++.... .++++.+.. +....++..|+.+...+
T Consensus 1 ~vlDiGa~~G~~~~~~~~~~~~~~v~~~E~~~~~~~~l~~~~~~n~~~~v~~~~~a 56 (143)
T TIGR01444 1 VVIDVGANIGDTSLYFARKGAEGRVIAFEPLPDAYEILEENVKLNNLPNVVLLNAA 56 (143)
T ss_pred CEEEccCCccHHHHHHHHhCCCCEEEEEecCHHHHHHHHHHHHHcCCCcEEEEEee
Confidence 489999999999999988653 368998866 22233455666666643
No 151
>PF01739 CheR: CheR methyltransferase, SAM binding domain; InterPro: IPR022642 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Flagellated bacteria swim towards favourable chemicals and away from deleterious ones. Sensing of chemoeffector gradients involves chemotaxis receptors, transmembrane (TM) proteins that detect stimuli through their periplasmic domains and transduce the signals via their cytoplasmic domains []. Signalling outputs from these receptors are influenced both by the binding of the chemoeffector ligand to their periplasmic domains and by methylation of specific glutamate residues on their cytoplasmic domains. Methylation is catalysed by CheR, an S-adenosylmethionine-dependent methyltransferase [], which reversibly methylates specific glutamate residues within a coiled coil region, to form gamma-glutamyl methyl ester residues [, ]. The structure of the Salmonella typhimurium chemotaxis receptor methyltransferase CheR, bound to S-adenosylhomocysteine, has been determined to a resolution of 2.0 A []. The structure reveals CheR to be a two-domain protein, with a smaller N-terminal helical domain linked via a single polypeptide connection to a larger C-terminal alpha/beta domain. The C-terminal domain has the characteristics of a nucleotide-binding fold, with an insertion of a small anti-parallel beta-sheet subdomain. The S-adenosylhomocysteine-binding site is formed mainly by the large domain, with contributions from residues within the N-terminal domain and the linker region []. CheR proteins are part of the chemotaxis signaling mechanism which methylates the chemotaxis receptor at specific glutamate residues. This entry refers to the C-terminal SAM-binding domain of the CherR-type MCP methyltransferases, which are found in bacteria, archaea and green plants. This entry is found in association with PF03705 from PFAM. ; PDB: 1AF7_A 1BC5_A.
Probab=95.33 E-value=0.041 Score=45.79 Aligned_cols=76 Identities=14% Similarity=0.161 Sum_probs=35.2
Q ss_pred cccccc---CCCceeEeeccCCch----hHHHhHHh----h--hhheeeeecc-------------------------cc
Q 035595 73 AELSNC---HEAALDAKGNFGNGS----LIADFSVV----I--KMKILASLVD-------------------------GE 114 (178)
Q Consensus 73 PEL~~~---~~~~~vLEvGCG~Gn----ta~pll~~----~--~~~i~AtD~s-------------------------~k 114 (178)
|++... ....+|+-.||+||- .|+-|... . ..+|+|||++ ++
T Consensus 21 p~~~~~~~~~~~lrIWSagCStGeE~YSlAmll~e~~~~~~~~~~~I~atDi~~~~L~~Ar~G~Y~~~~~~~~~~~~~~r 100 (196)
T PF01739_consen 21 PPLLARARPGRPLRIWSAGCSTGEEPYSLAMLLLELLPGALGWDFRILATDISPSALEKARAGIYPERSLRGLPPAYLRR 100 (196)
T ss_dssp -------CS-S-EEEEETT-TTTHHHHHHHHHHHHHH-S-TT-SEEEEEEES-HHHHHHHHHTEEEGGGGTTS-HHHHHH
T ss_pred HhhccccCCCCCeEEEECCCCCChhHHHHHHHHHHHhcccCCCceEEEEEECCHHHHHHHHhCCCCHHHHhhhHHHHHHH
Confidence 555532 367899999999994 45544441 1 3588999977 11
Q ss_pred cc----cCCC-------cceEEEEcccccCCCCCCCCCcceEeeeeh
Q 035595 115 YY----NNGH-------ENFSFLVDGEYYSNCPAVSGSQNYVILANL 150 (178)
Q Consensus 115 ~~----~~g~-------~N~~F~~~~~~~s~~p~~~~s~~~vil~nl 150 (178)
+- +.+. .++.|.+.+.. . ++...+..|+++.-|+
T Consensus 101 yf~~~~~~~~~v~~~lr~~V~F~~~NL~-~-~~~~~~~fD~I~CRNV 145 (196)
T PF01739_consen 101 YFTERDGGGYRVKPELRKMVRFRRHNLL-D-PDPPFGRFDLIFCRNV 145 (196)
T ss_dssp HEEEE-CCCTTE-HHHHTTEEEEE--TT---S------EEEEEE-SS
T ss_pred hccccCCCceeEChHHcCceEEEecccC-C-CCcccCCccEEEecCE
Confidence 10 0011 12677776665 2 3445788999988886
No 152
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=95.23 E-value=0.0078 Score=53.70 Aligned_cols=95 Identities=17% Similarity=0.182 Sum_probs=60.3
Q ss_pred ccccccCCcchhH----HHhhhccCcc------cccccCCCCCCCccccccccchHHHHHHHhhcCCCCccccc------
Q 035595 9 AGEYHSKDFEWET----LKQEIENDPS------LQYHLLPYNSSPEAAQEAEKDSDAWKRFHSRHSSGKFFKFT------ 72 (178)
Q Consensus 9 a~eyhs~DFeWe~----lr~EvE~~~s------~~~hll~~~~t~~~~~~~~~~~~~Wd~Fy~rh~~~~FFKdR------ 72 (178)
.++||.+-++.+. +++=+|.+|. +.-.++-+. +.+...++.+=...|..|- .+| |.
T Consensus 35 ~g~~~ekag~~daAa~a~~~~L~ldp~D~~gaa~kLa~lg~~-----e~p~~pP~aYVe~LFD~~A-e~F--d~~LVdkL 106 (287)
T COG4976 35 LGEYTEKAGEFDAAAAAYEEVLELDPEDHGGAALKLAVLGRG-----ETPEKPPSAYVETLFDQYA-ERF--DHILVDKL 106 (287)
T ss_pred cchhhhhcccHHHHHHHHHHHHcCCcccccchhhhHHhhcCC-----CCCCCCchHHHHHHHHHHH-HHH--HHHHHHHh
Confidence 4578888888776 4555555654 222222111 1122234466677776664 233 22
Q ss_pred ----ccccc-------cCCCceeEeeccCCchhHHHhHHhhhhheeeeecc
Q 035595 73 ----AELSN-------CHEAALDAKGNFGNGSLIADFSVVIKMKILASLVD 112 (178)
Q Consensus 73 ----PEL~~-------~~~~~~vLEvGCG~Gnta~pll~~~~~~i~AtD~s 112 (178)
|+++. ..+-.++|++|||||=++-+|-.-+. .+.++|+|
T Consensus 107 ~Y~vP~~l~emI~~~~~g~F~~~lDLGCGTGL~G~~lR~~a~-~ltGvDiS 156 (287)
T COG4976 107 GYSVPELLAEMIGKADLGPFRRMLDLGCGTGLTGEALRDMAD-RLTGVDIS 156 (287)
T ss_pred cCccHHHHHHHHHhccCCccceeeecccCcCcccHhHHHHHh-hccCCchh
Confidence 66532 23468999999999999999998886 89999988
No 153
>PRK11727 23S rRNA mA1618 methyltransferase; Provisional
Probab=95.18 E-value=0.008 Score=53.79 Aligned_cols=32 Identities=16% Similarity=0.079 Sum_probs=23.8
Q ss_pred CCceeEeeccCCchhHHHhHHh--hhhheeeeecc
Q 035595 80 EAALDAKGNFGNGSLIADFSVV--IKMKILASLVD 112 (178)
Q Consensus 80 ~~~~vLEvGCG~Gnta~pll~~--~~~~i~AtD~s 112 (178)
...++||||||+|- ++|++.. ...+++|||++
T Consensus 114 ~~~~vLDIGtGag~-I~~lLa~~~~~~~~~atDId 147 (321)
T PRK11727 114 ANVRVLDIGVGANC-IYPLIGVHEYGWRFVGSDID 147 (321)
T ss_pred CCceEEEecCCccH-HHHHHHhhCCCCEEEEEeCC
Confidence 45789999999984 4555543 24689999987
No 154
>PLN02476 O-methyltransferase
Probab=95.10 E-value=0.016 Score=51.11 Aligned_cols=56 Identities=14% Similarity=-0.037 Sum_probs=40.6
Q ss_pred CCCceeEeeccCCchhHHHhHHhh--hhheeeeecccc--------cccCCCc-ceEEEEcccccCC
Q 035595 79 HEAALDAKGNFGNGSLIADFSVVI--KMKILASLVDGE--------YYNNGHE-NFSFLVDGEYYSN 134 (178)
Q Consensus 79 ~~~~~vLEvGCG~Gnta~pll~~~--~~~i~AtD~s~k--------~~~~g~~-N~~F~~~~~~~s~ 134 (178)
..+.+|||||||+|..++-++... ..+++++|.+.+ ....|+. ++++..+.+...+
T Consensus 117 ~~ak~VLEIGT~tGySal~lA~al~~~G~V~TiE~d~e~~~~Ar~n~~~aGl~~~I~li~GdA~e~L 183 (278)
T PLN02476 117 LGAERCIEVGVYTGYSSLAVALVLPESGCLVACERDSNSLEVAKRYYELAGVSHKVNVKHGLAAESL 183 (278)
T ss_pred cCCCeEEEecCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHH
Confidence 357899999999999999998753 346889887632 2445665 5888887664333
No 155
>PRK00811 spermidine synthase; Provisional
Probab=95.06 E-value=0.019 Score=49.50 Aligned_cols=37 Identities=14% Similarity=-0.054 Sum_probs=29.5
Q ss_pred cccCCCceeEeeccCCchhHHHhHHhh-hhheeeeecc
Q 035595 76 SNCHEAALDAKGNFGNGSLIADFSVVI-KMKILASLVD 112 (178)
Q Consensus 76 ~~~~~~~~vLEvGCG~Gnta~pll~~~-~~~i~AtD~s 112 (178)
+....+.+||+||||+|.++.-++... ..+++++|++
T Consensus 72 ~~~~~p~~VL~iG~G~G~~~~~~l~~~~~~~V~~VEid 109 (283)
T PRK00811 72 FAHPNPKRVLIIGGGDGGTLREVLKHPSVEKITLVEID 109 (283)
T ss_pred hhCCCCCEEEEEecCchHHHHHHHcCCCCCEEEEEeCC
Confidence 344567899999999999999999862 2478888877
No 156
>TIGR00095 RNA methyltransferase, RsmD family. This model represents a family of uncharacterized bacterial proteins. Members are present in nearly every complete bacterial genome, always in a single copy. PSI-BLAST analysis shows homology to several families of SAM-dependent methyltransferases, including ribosomal RNA adenine dimethylases.
Probab=95.03 E-value=0.0091 Score=48.74 Aligned_cols=51 Identities=10% Similarity=-0.153 Sum_probs=36.3
Q ss_pred CCceeEeeccCCchhHHHhHHhhhhheeeeeccccc--------ccCCCc-ceEEEEccc
Q 035595 80 EAALDAKGNFGNGSLIADFSVVIKMKILASLVDGEY--------YNNGHE-NFSFLVDGE 130 (178)
Q Consensus 80 ~~~~vLEvGCG~Gnta~pll~~~~~~i~AtD~s~k~--------~~~g~~-N~~F~~~~~ 130 (178)
...+|||++||+|+.++.++.....+++++|.+.++ ...+.. ++.|.....
T Consensus 49 ~g~~vLDLfaGsG~lglea~srga~~v~~vE~~~~a~~~~~~N~~~~~~~~~~~~~~~D~ 108 (189)
T TIGR00095 49 QGAHLLDVFAGSGLLGEEALSRGAKVAFLEEDDRKANQTLKENLALLKSGEQAEVVRNSA 108 (189)
T ss_pred CCCEEEEecCCCcHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHhCCcccEEEEehhH
Confidence 457899999999999999998754478999976222 223443 466666555
No 157
>PRK00050 16S rRNA m(4)C1402 methyltranserfase; Provisional
Probab=95.00 E-value=0.021 Score=50.65 Aligned_cols=51 Identities=16% Similarity=0.207 Sum_probs=39.5
Q ss_pred CCCceeEeeccCCchhHHHhHHhh--hhheeeeecc--------cccccCCCcceEEEEcccc
Q 035595 79 HEAALDAKGNFGNGSLIADFSVVI--KMKILASLVD--------GEYYNNGHENFSFLVDGEY 131 (178)
Q Consensus 79 ~~~~~vLEvGCG~Gnta~pll~~~--~~~i~AtD~s--------~k~~~~g~~N~~F~~~~~~ 131 (178)
.+...+|+++||.|.-...|+... +.+++|.|++ +++.. ..++.|..+...
T Consensus 18 ~pg~~vlD~TlG~GGhS~~il~~~~~~g~VigiD~D~~al~~ak~~L~~--~~ri~~i~~~f~ 78 (296)
T PRK00050 18 KPDGIYVDGTFGGGGHSRAILERLGPKGRLIAIDRDPDAIAAAKDRLKP--FGRFTLVHGNFS 78 (296)
T ss_pred CCCCEEEEeCcCChHHHHHHHHhCCCCCEEEEEcCCHHHHHHHHHhhcc--CCcEEEEeCCHH
Confidence 456799999999999999999875 3689999977 22322 457888887663
No 158
>KOG0820 consensus Ribosomal RNA adenine dimethylase [RNA processing and modification]
Probab=94.90 E-value=0.028 Score=50.96 Aligned_cols=33 Identities=21% Similarity=0.229 Sum_probs=29.0
Q ss_pred CCCceeEeeccCCchhHHHhHHhhhhheeeeecc
Q 035595 79 HEAALDAKGNFGNGSLIADFSVVIKMKILASLVD 112 (178)
Q Consensus 79 ~~~~~vLEvGCG~Gnta~pll~~~~~~i~AtD~s 112 (178)
.+.+.|||||-||||....||+..+ +++|+..+
T Consensus 57 k~tD~VLEvGPGTGnLT~~lLe~~k-kVvA~E~D 89 (315)
T KOG0820|consen 57 KPTDVVLEVGPGTGNLTVKLLEAGK-KVVAVEID 89 (315)
T ss_pred CCCCEEEEeCCCCCHHHHHHHHhcC-eEEEEecC
Confidence 4789999999999999999999987 88886644
No 159
>KOG2904 consensus Predicted methyltransferase [General function prediction only]
Probab=94.87 E-value=0.042 Score=50.02 Aligned_cols=32 Identities=13% Similarity=0.035 Sum_probs=27.2
Q ss_pred CceeEeeccCCchhHHHhHHhh-hhheeeeecc
Q 035595 81 AALDAKGNFGNGSLIADFSVVI-KMKILASLVD 112 (178)
Q Consensus 81 ~~~vLEvGCG~Gnta~pll~~~-~~~i~AtD~s 112 (178)
...+||+|||+|-.++-++... .-.++|+|+|
T Consensus 149 ~~~ildlgtGSGaIslsll~~L~~~~v~AiD~S 181 (328)
T KOG2904|consen 149 HTHILDLGTGSGAISLSLLHGLPQCTVTAIDVS 181 (328)
T ss_pred cceEEEecCCccHHHHHHHhcCCCceEEEEecc
Confidence 3579999999999999999764 4578999988
No 160
>PF00398 RrnaAD: Ribosomal RNA adenine dimethylase; InterPro: IPR001737 This family of proteins include rRNA adenine dimethylases (e.g. KsgA) and the Erythromycin resistance methylases (Erm). The bacterial enzyme KsgA catalyses the transfer of a total of four methyl groups from S-adenosyl-l-methionine (S-AdoMet) to two adjacent adenosine bases in 16S rRNA. This enzyme and the resulting modified adenosine bases appear to be conserved in all species of eubacteria, eukaryotes, and archaea, and in eukaryotic organelles. Bacterial resistance to the aminoglycoside antibiotic kasugamycin involves inactivation of KsgA and resulting loss of the dimethylations, with modest consequences to the overall fitness of the organism. In contrast, the yeast ortholog, Dim1, is essential. In Saccharomyces cerevisiae (Baker's yeast), and presumably in other eukaryotes, the enzyme performs a vital role in pre-rRNA processing in addition to its methylating activity. The best conserved region in these enzymes is located in the N-terminal section and corresponds to a region that is probably involved in S-adenosyl methionine (SAM) binding domain. The crystal structure of KsgA from Escherichia coli has been solved to a resolution of 2.1A. It bears a strong similarity to the crystal structure of ErmC' from Bacillus stearothermophilus and a lesser similarity to the yeast mitochondrial transcription factor, sc-mtTFB []. The Erm family of RNA methyltransferases, which methylate a single adenosine base in 23S rRNA confer resistance to the MLS-B group of antibiotics. Despite their sequence similarity, the two enzyme families have strikingly different levels of regulation that remain to be elucidated. Other orthologs, of this family include the yeast and Homo sapiens (Human) mitochondrial transcription factors (MTF1 and h-mtTFB respectively), which are nuclear encoded []. Human-mtTFB is able to stimulate transcription in vitro independently of its S-adenosylmethionine binding and rRNA methyltransferase activity [].; GO: 0000179 rRNA (adenine-N6,N6-)-dimethyltransferase activity, 0008649 rRNA methyltransferase activity, 0000154 rRNA modification; PDB: 3FTF_A 3R9X_B 3FTE_A 3FTC_A 3FTD_A 3GRY_A 3FYC_A 3GRU_A 3FYD_A 3GRV_A ....
Probab=94.71 E-value=0.063 Score=45.47 Aligned_cols=72 Identities=15% Similarity=0.140 Sum_probs=47.8
Q ss_pred CCCceeEeeccCCchhHHHhHHhhhhheeeeeccccc----cc--CCCcceEEEEcccccCCCCCCCCCcceEeeeehh
Q 035595 79 HEAALDAKGNFGNGSLIADFSVVIKMKILASLVDGEY----YN--NGHENFSFLVDGEYYSNCPAVSGSQNYVILANLK 151 (178)
Q Consensus 79 ~~~~~vLEvGCG~Gnta~pll~~~~~~i~AtD~s~k~----~~--~g~~N~~F~~~~~~~s~~p~~~~s~~~vil~nl~ 151 (178)
.+...|||+|.|+|.....|+...+ ++++++.+.+. .+ ....|+....++...--.+..-....+.|+.||=
T Consensus 29 ~~~~~VlEiGpG~G~lT~~L~~~~~-~v~~vE~d~~~~~~L~~~~~~~~~~~vi~~D~l~~~~~~~~~~~~~~vv~NlP 106 (262)
T PF00398_consen 29 SEGDTVLEIGPGPGALTRELLKRGK-RVIAVEIDPDLAKHLKERFASNPNVEVINGDFLKWDLYDLLKNQPLLVVGNLP 106 (262)
T ss_dssp GTTSEEEEESSTTSCCHHHHHHHSS-EEEEEESSHHHHHHHHHHCTTCSSEEEEES-TTTSCGGGHCSSSEEEEEEEET
T ss_pred CCCCEEEEeCCCCccchhhHhcccC-cceeecCcHhHHHHHHHHhhhcccceeeecchhccccHHhhcCCceEEEEEec
Confidence 4678999999999999999999884 88888866111 11 1456788777666421111111456777888874
No 161
>TIGR00417 speE spermidine synthase. the SpeE subunit of spermidine synthase catalysesthe reaction (putrescine + S-adenosylmethioninamine = spermidine + 5'-methylthioadenosine) and is involved in polyamine biosynthesis and in the biosynthesis of spermidine from arganine. The region between residues 77 and 120 of the seed alignment is thought to be involved in binding to decarboxylated SAM.
Probab=94.59 E-value=0.031 Score=47.55 Aligned_cols=35 Identities=11% Similarity=-0.044 Sum_probs=27.5
Q ss_pred cCCCceeEeeccCCchhHHHhHHhh-hhheeeeecc
Q 035595 78 CHEAALDAKGNFGNGSLIADFSVVI-KMKILASLVD 112 (178)
Q Consensus 78 ~~~~~~vLEvGCG~Gnta~pll~~~-~~~i~AtD~s 112 (178)
...+.+||+||||+|.++..++... ..+++++|++
T Consensus 70 ~~~p~~VL~iG~G~G~~~~~ll~~~~~~~v~~veid 105 (270)
T TIGR00417 70 HPNPKHVLVIGGGDGGVLREVLKHKSVEKATLVDID 105 (270)
T ss_pred CCCCCEEEEEcCCchHHHHHHHhCCCcceEEEEeCC
Confidence 3445699999999999999888763 2478888876
No 162
>PRK03612 spermidine synthase; Provisional
Probab=94.49 E-value=0.022 Score=53.31 Aligned_cols=40 Identities=8% Similarity=-0.016 Sum_probs=31.2
Q ss_pred ccccccCCCceeEeeccCCchhHHHhHHhhh-hheeeeecc
Q 035595 73 AELSNCHEAALDAKGNFGNGSLIADFSVVIK-MKILASLVD 112 (178)
Q Consensus 73 PEL~~~~~~~~vLEvGCG~Gnta~pll~~~~-~~i~AtD~s 112 (178)
|-+.....+.+||++|||+|.++.-++.+.. .+++++|++
T Consensus 290 ~~l~~~~~~~rVL~IG~G~G~~~~~ll~~~~v~~v~~VEid 330 (521)
T PRK03612 290 PAMAASARPRRVLVLGGGDGLALREVLKYPDVEQVTLVDLD 330 (521)
T ss_pred HHHhhCCCCCeEEEEcCCccHHHHHHHhCCCcCeEEEEECC
Confidence 4444445678999999999999999998642 488898876
No 163
>KOG1270 consensus Methyltransferases [Coenzyme transport and metabolism]
Probab=94.38 E-value=0.021 Score=51.13 Aligned_cols=30 Identities=10% Similarity=-0.013 Sum_probs=27.6
Q ss_pred ceeEeeccCCchhHHHhHHhhhhheeeeecc
Q 035595 82 ALDAKGNFGNGSLIADFSVVIKMKILASLVD 112 (178)
Q Consensus 82 ~~vLEvGCG~Gnta~pll~~~~~~i~AtD~s 112 (178)
+.||++|||+|=.-.||++.-+ .+.++|++
T Consensus 91 ~~ilDvGCGgGLLSepLArlga-~V~GID~s 120 (282)
T KOG1270|consen 91 MKILDVGCGGGLLSEPLARLGA-QVTGIDAS 120 (282)
T ss_pred ceEEEeccCccccchhhHhhCC-eeEeeccc
Confidence 6799999999999999999886 89999977
No 164
>PRK04338 N(2),N(2)-dimethylguanosine tRNA methyltransferase; Provisional
Probab=94.38 E-value=0.038 Score=50.19 Aligned_cols=50 Identities=12% Similarity=0.009 Sum_probs=36.5
Q ss_pred CceeEeeccCCchhHHHhHHhhh-hheeeeeccccc--------ccCCCcceEEEEccc
Q 035595 81 AALDAKGNFGNGSLIADFSVVIK-MKILASLVDGEY--------YNNGHENFSFLVDGE 130 (178)
Q Consensus 81 ~~~vLEvGCG~Gnta~pll~~~~-~~i~AtD~s~k~--------~~~g~~N~~F~~~~~ 130 (178)
..+|||++||+|..+++++.... ..+++.|++..+ ..+++.++.|...+.
T Consensus 58 ~~~vLDl~aGsG~~~l~~a~~~~~~~V~a~Din~~Av~~a~~N~~~N~~~~~~v~~~Da 116 (382)
T PRK04338 58 RESVLDALSASGIRGIRYALETGVEKVTLNDINPDAVELIKKNLELNGLENEKVFNKDA 116 (382)
T ss_pred CCEEEECCCcccHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCCCceEEEhhhH
Confidence 35899999999999999987642 378999977332 335666666666554
No 165
>KOG1540 consensus Ubiquinone biosynthesis methyltransferase COQ5 [Coenzyme transport and metabolism]
Probab=94.17 E-value=0.15 Score=46.04 Aligned_cols=66 Identities=8% Similarity=-0.032 Sum_probs=43.2
Q ss_pred CCCceeEeeccCCchhHHHhHHhhhh-------heeeeecc--------cccccCCC---cceEEEEcccccCCCCCC-C
Q 035595 79 HEAALDAKGNFGNGSLIADFSVVIKM-------KILASLVD--------GEYYNNGH---ENFSFLVDGEYYSNCPAV-S 139 (178)
Q Consensus 79 ~~~~~vLEvGCG~Gnta~pll~~~~~-------~i~AtD~s--------~k~~~~g~---~N~~F~~~~~~~s~~p~~-~ 139 (178)
...++||+++||||-+||.|+.+++. +++-.|++ +|+...+. ..+.|..+++. .|| . .
T Consensus 99 ~~~m~~lDvaGGTGDiaFril~~v~s~~~~~~~~V~v~Dinp~mL~vgkqRa~~~~l~~~~~~~w~~~dAE-~Lp--Fdd 175 (296)
T KOG1540|consen 99 GKGMKVLDVAGGTGDIAFRILRHVKSQFGDRESKVTVLDINPHMLAVGKQRAKKRPLKASSRVEWVEGDAE-DLP--FDD 175 (296)
T ss_pred CCCCeEEEecCCcchhHHHHHHhhccccCCCCceEEEEeCCHHHHHHHHHHHhhcCCCcCCceEEEeCCcc-cCC--CCC
Confidence 44589999999999999999998754 46667766 33322222 23677775554 344 3 4
Q ss_pred CCcceEee
Q 035595 140 GSQNYVIL 147 (178)
Q Consensus 140 ~s~~~vil 147 (178)
.+.|...+
T Consensus 176 ~s~D~yTi 183 (296)
T KOG1540|consen 176 DSFDAYTI 183 (296)
T ss_pred CcceeEEE
Confidence 55665544
No 166
>KOG1541 consensus Predicted protein carboxyl methylase [General function prediction only]
Probab=93.96 E-value=0.024 Score=50.32 Aligned_cols=98 Identities=14% Similarity=0.004 Sum_probs=58.4
Q ss_pred cccccCC--CceeEeeccCCchhHHHhHHhhhhheeeeeccc----ccccCCCcceEEEEcccccCCCCCCCCCcceEee
Q 035595 74 ELSNCHE--AALDAKGNFGNGSLIADFSVVIKMKILASLVDG----EYYNNGHENFSFLVDGEYYSNCPAVSGSQNYVIL 147 (178)
Q Consensus 74 EL~~~~~--~~~vLEvGCG~Gnta~pll~~~~~~i~AtD~s~----k~~~~g~~N~~F~~~~~~~s~~p~~~~s~~~vil 147 (178)
||+...+ +..||+||||+|=.+--|...- -.++++|+|- -+-+..++ =++..++--.++| -=||+-|=||.
T Consensus 42 ELLalp~~~~~~iLDIGCGsGLSg~vL~~~G-h~wiGvDiSpsML~~a~~~e~e-gdlil~DMG~Glp-frpGtFDg~IS 118 (270)
T KOG1541|consen 42 ELLALPGPKSGLILDIGCGSGLSGSVLSDSG-HQWIGVDISPSMLEQAVERELE-GDLILCDMGEGLP-FRPGTFDGVIS 118 (270)
T ss_pred HHhhCCCCCCcEEEEeccCCCcchheeccCC-ceEEeecCCHHHHHHHHHhhhh-cCeeeeecCCCCC-CCCCccceEEE
Confidence 5554444 6789999999998887776655 5789999982 11111112 1222222211221 12788888887
Q ss_pred eehhhhhhhccCCCCccccCchhhhhhhhc
Q 035595 148 ANLKSYRRVMFDSPDTEEKNKPHLKKFVET 177 (178)
Q Consensus 148 ~nl~~~~~~~~~~~~~~~~~~~~~~~~~~~ 177 (178)
|.-= .+.+..-.+-+..++.|..|..|
T Consensus 119 ISAv---QWLcnA~~s~~~P~~Rl~~FF~t 145 (270)
T KOG1541|consen 119 ISAV---QWLCNADKSLHVPKKRLLRFFGT 145 (270)
T ss_pred eeee---eeecccCccccChHHHHHHHhhh
Confidence 7532 55666555556666777777653
No 167
>PF00891 Methyltransf_2: O-methyltransferase; InterPro: IPR001077 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This domain includes a range of O-methyltransferases some of which utilise S-adenosyl methionine as substrate []. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. In eukaryotes, DNA methylation has been implicated in the control of several cellular processes, including differentiation, gene regulation, and embryonic development. O-methyltransferases have a common catalytic domain structure, which might be universal among S-adenosyl-L-methionine (AdoMet)-dependent methyltransferases []. Comparative analysis of the predicted amino acid sequences of a number of plant O-methyltransferase cDNA clones show that they share some 32-71% sequence identity, and can be grouped according to the different compounds they utilise as substrates [].; GO: 0008171 O-methyltransferase activity; PDB: 1FPQ_A 1FP1_D 3P9K_B 3P9I_D 3P9C_A 3I53_A 3I5U_A 3I64_A 3I58_A 1ZG3_A ....
Probab=93.93 E-value=0.2 Score=41.08 Aligned_cols=63 Identities=6% Similarity=0.055 Sum_probs=42.1
Q ss_pred CCceeEeeccCCchhHHHhHHhh-hhheeeeecc---cccccCCCcceEEEEcccccCCCCCCCCCcceEeeee
Q 035595 80 EAALDAKGNFGNGSLIADFSVVI-KMKILASLVD---GEYYNNGHENFSFLVDGEYYSNCPAVSGSQNYVILAN 149 (178)
Q Consensus 80 ~~~~vLEvGCG~Gnta~pll~~~-~~~i~AtD~s---~k~~~~g~~N~~F~~~~~~~s~~p~~~~s~~~vil~n 149 (178)
+..+|++||+|+|..+..|+... ..+.+-.|.- +.+.. ..++.|.......+ +|. .|+++|.|
T Consensus 100 ~~~~vvDvGGG~G~~~~~l~~~~P~l~~~v~Dlp~v~~~~~~--~~rv~~~~gd~f~~----~P~-~D~~~l~~ 166 (241)
T PF00891_consen 100 GFKTVVDVGGGSGHFAIALARAYPNLRATVFDLPEVIEQAKE--ADRVEFVPGDFFDP----LPV-ADVYLLRH 166 (241)
T ss_dssp TSSEEEEET-TTSHHHHHHHHHSTTSEEEEEE-HHHHCCHHH--TTTEEEEES-TTTC----CSS-ESEEEEES
T ss_pred CccEEEeccCcchHHHHHHHHHCCCCcceeeccHhhhhcccc--ccccccccccHHhh----hcc-ccceeeeh
Confidence 45689999999999999999875 3444444422 22222 67899988776533 344 89999987
No 168
>PF08704 GCD14: tRNA methyltransferase complex GCD14 subunit; InterPro: IPR014816 GCD14 is a subunit of the tRNA methyltransferase complex and is required for 1-methyladenosine modification and maturation of initiator methionyl-tRNA []. ; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity, 0030488 tRNA methylation; PDB: 2YVL_C 1YB2_A 2B25_B 1O54_A 2PWY_B 1I9G_A 3LGA_B 3LHD_C 3MB5_A.
Probab=93.92 E-value=0.15 Score=44.14 Aligned_cols=71 Identities=11% Similarity=0.120 Sum_probs=43.7
Q ss_pred ccCCCceeEeeccCCchhHHHhHHhh--hhheeeeecc--------cccccCCCc-ceEEEEcccc-cCCCCCCCCCcce
Q 035595 77 NCHEAALDAKGNFGNGSLIADFSVVI--KMKILASLVD--------GEYYNNGHE-NFSFLVDGEY-YSNCPAVSGSQNY 144 (178)
Q Consensus 77 ~~~~~~~vLEvGCG~Gnta~pll~~~--~~~i~AtD~s--------~k~~~~g~~-N~~F~~~~~~-~s~~p~~~~s~~~ 144 (178)
...|.++|||.|-|.|++..-|+..+ ..+++-.++. +.....|.. |++|...+.. .+.+-++++..|-
T Consensus 37 ~i~pG~~VlEaGtGSG~lt~~l~r~v~p~G~v~t~E~~~~~~~~A~~n~~~~gl~~~v~~~~~Dv~~~g~~~~~~~~~Da 116 (247)
T PF08704_consen 37 DIRPGSRVLEAGTGSGSLTHALARAVGPTGHVYTYEFREDRAEKARKNFERHGLDDNVTVHHRDVCEEGFDEELESDFDA 116 (247)
T ss_dssp T--TT-EEEEE--TTSHHHHHHHHHHTTTSEEEEEESSHHHHHHHHHHHHHTTCCTTEEEEES-GGCG--STT-TTSEEE
T ss_pred CCCCCCEEEEecCCcHHHHHHHHHHhCCCeEEEccccCHHHHHHHHHHHHHcCCCCCceeEecceecccccccccCcccE
Confidence 44688999999999999999999876 3466666655 233344664 7899887663 3444456677776
Q ss_pred Eee
Q 035595 145 VIL 147 (178)
Q Consensus 145 vil 147 (178)
|+|
T Consensus 117 vfL 119 (247)
T PF08704_consen 117 VFL 119 (247)
T ss_dssp EEE
T ss_pred EEE
Confidence 665
No 169
>PRK01581 speE spermidine synthase; Validated
Probab=93.87 E-value=0.041 Score=50.82 Aligned_cols=37 Identities=11% Similarity=-0.030 Sum_probs=29.9
Q ss_pred cccCCCceeEeeccCCchhHHHhHHhh-hhheeeeecc
Q 035595 76 SNCHEAALDAKGNFGNGSLIADFSVVI-KMKILASLVD 112 (178)
Q Consensus 76 ~~~~~~~~vLEvGCG~Gnta~pll~~~-~~~i~AtD~s 112 (178)
.....+.+||+||||+|.++..++... ..+++++|++
T Consensus 146 ~~h~~PkrVLIIGgGdG~tlrelLk~~~v~~It~VEID 183 (374)
T PRK01581 146 SKVIDPKRVLILGGGDGLALREVLKYETVLHVDLVDLD 183 (374)
T ss_pred HhCCCCCEEEEECCCHHHHHHHHHhcCCCCeEEEEeCC
Confidence 334567899999999999999999864 2488999977
No 170
>PRK10611 chemotaxis methyltransferase CheR; Provisional
Probab=93.86 E-value=0.17 Score=44.65 Aligned_cols=59 Identities=17% Similarity=0.261 Sum_probs=39.3
Q ss_pred hHHHHHHHhh---cCCCCcccccc-------cccccCCCceeEeeccCCch----hHHHhHHhh-----hhheeeeecc
Q 035595 53 SDAWKRFHSR---HSSGKFFKFTA-------ELSNCHEAALDAKGNFGNGS----LIADFSVVI-----KMKILASLVD 112 (178)
Q Consensus 53 ~~~Wd~Fy~r---h~~~~FFKdRP-------EL~~~~~~~~vLEvGCG~Gn----ta~pll~~~-----~~~i~AtD~s 112 (178)
...|+.+... |. +.||.|.+ ++....+..+|+-.||.||- .|+-|.+.. +.+|+|||++
T Consensus 79 ~~e~~~li~~ltine-T~FFRd~~~f~~L~~~~~~~~~~irIWSAgCStGEEpYSlAmll~e~~~~~~~~~~I~atDIs 156 (287)
T PRK10611 79 SAEWQAFINALTTNL-TAFFREAHHFPILAEHARRRSGEYRVWSAAASTGEEPYSIAMTLADTLGTAPGRWKVFASDID 156 (287)
T ss_pred HHHHHHHHHHhhCCC-CCccCCcHHHHHHHHHHHhcCCCEEEEEccccCCHHHHHHHHHHHHhhcccCCCcEEEEEECC
Confidence 5678888743 44 58999982 12122345899999999995 444444421 3579999987
No 171
>PF08003 Methyltransf_9: Protein of unknown function (DUF1698); InterPro: IPR010017 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This entry represents a set of bacterial AdoMet-dependent tRNA (mo5U34)-methyltransferases. These enzymes catalyse the conversion of 5-hydroxyuridine (ho5U) to 5-methoxyuridine (mo5U) at the wobble position (34) of tRNA []. The 5-methoxyuridine is subsequently converted to uridine-5-oxyacetic acid, a modified nucleoside that is apparently necessary for the efficient decoding of G-ending Pro, Ala, and Val codons in these organisms [].; GO: 0016300 tRNA (uracil) methyltransferase activity, 0002098 tRNA wobble uridine modification
Probab=93.84 E-value=0.096 Score=47.60 Aligned_cols=66 Identities=9% Similarity=-0.064 Sum_probs=45.0
Q ss_pred CCceeEeeccCCchhHHHhHHhhhhheeeeecc----------cccccCCCcceEEEEcccccCCCCCCCCCcceEeeee
Q 035595 80 EAALDAKGNFGNGSLIADFSVVIKMKILASLVD----------GEYYNNGHENFSFLVDGEYYSNCPAVSGSQNYVILAN 149 (178)
Q Consensus 80 ~~~~vLEvGCG~Gnta~pll~~~~~~i~AtD~s----------~k~~~~g~~N~~F~~~~~~~s~~p~~~~s~~~vil~n 149 (178)
...+||+||||+|--.+.++......++++|-+ ++.. |..+..|...-..+.+|. .+.-|+|+.-.
T Consensus 115 ~gk~VLDIGC~nGY~~frM~~~GA~~ViGiDP~~lf~~QF~~i~~~l--g~~~~~~~lplgvE~Lp~--~~~FDtVF~MG 190 (315)
T PF08003_consen 115 KGKRVLDIGCNNGYYSFRMLGRGAKSVIGIDPSPLFYLQFEAIKHFL--GQDPPVFELPLGVEDLPN--LGAFDTVFSMG 190 (315)
T ss_pred CCCEEEEecCCCcHHHHHHhhcCCCEEEEECCChHHHHHHHHHHHHh--CCCccEEEcCcchhhccc--cCCcCEEEEee
Confidence 457999999999999999999876689999955 2222 223333444222335665 56788887655
No 172
>PF01728 FtsJ: FtsJ-like methyltransferase; InterPro: IPR002877 RrmJ (FtsJ) is a well conserved heat shock protein present in prokaryotes, archaea, and eukaryotes. RrmJ is responsible for methylating 23 S rRNA at position U2552 in the aminoacyl (A)1-site of the ribosome []. U2552 is one of the five universally conserved A-loop residues and has been shown to be methylated at the ribose 2'-OH group in the majority of organisms investigated so far. This suggests that this modification plays an important role in the A-loop function. RrmJ recognises its methylation target only when the 23 S rRNA is present in 50 S ribosomal subunits. This suggests that the RrmJ-mediated methylation must occur late in the maturation process of the ribosome. This is in contrast to other known 23 S rRNA modifications that occur in earlier maturation steps. The 1.5 A crystal structure of RrmJ in complex with its cofactor S-adenosylmethionine revealed that RrmJ has a methyltransferase fold. The active site of RrmJ appears to be formed by a catalytic triad consisting of two lysine residues and the negatively charged aspartate residue. Another highly conserved glutamate residue that is present in the active site of RrmJ appears to play only a minor role in the methyltransfer reaction in vivo []. ; GO: 0003676 nucleic acid binding, 0008168 methyltransferase activity, 0032259 methylation; PDB: 3GCZ_A 2PLW_A 2NYU_A 2OXT_C 3EMD_A 3ELY_A 3ELW_A 3ELU_A 3ELD_A 3EMB_A ....
Probab=93.42 E-value=0.11 Score=40.71 Aligned_cols=54 Identities=11% Similarity=-0.101 Sum_probs=40.4
Q ss_pred hHHHHHHHhhcCCCCcccccccccccCCCceeEeeccCCchhHHHhHHhh--hhheeeeeccc
Q 035595 53 SDAWKRFHSRHSSGKFFKFTAELSNCHEAALDAKGNFGNGSLIADFSVVI--KMKILASLVDG 113 (178)
Q Consensus 53 ~~~Wd~Fy~rh~~~~FFKdRPEL~~~~~~~~vLEvGCG~Gnta~pll~~~--~~~i~AtD~s~ 113 (178)
+++|-+++...+.-++| ..+...+||++||+.|...--++... ...++|+|+..
T Consensus 3 sRa~~KL~ei~~~~~~~-------~~~~~~~vlDlG~aPGGws~~~~~~~~~~~~v~avDl~~ 58 (181)
T PF01728_consen 3 SRAAFKLYEIDEKFKIF-------KPGKGFTVLDLGAAPGGWSQVLLQRGGPAGRVVAVDLGP 58 (181)
T ss_dssp STHHHHHHHHHHTTSSS--------TTTTEEEEEET-TTSHHHHHHHTSTTTEEEEEEEESSS
T ss_pred CHHHHHHHHHHHHCCCC-------CcccccEEEEcCCcccceeeeeeecccccceEEEEeccc
Confidence 46788888777654444 22346889999999999999999877 56999999873
No 173
>PF13679 Methyltransf_32: Methyltransferase domain
Probab=93.33 E-value=0.082 Score=40.72 Aligned_cols=34 Identities=12% Similarity=0.115 Sum_probs=29.5
Q ss_pred CCCceeEeeccCCchhHHHhHH-----hhhhheeeeecc
Q 035595 79 HEAALDAKGNFGNGSLIADFSV-----VIKMKILASLVD 112 (178)
Q Consensus 79 ~~~~~vLEvGCG~Gnta~pll~-----~~~~~i~AtD~s 112 (178)
.+..+|+++|||-|.+++.|+. .....++++|.+
T Consensus 24 ~~~~~vvD~GsG~GyLs~~La~~l~~~~~~~~v~~iD~~ 62 (141)
T PF13679_consen 24 KRCITVVDLGSGKGYLSRALAHLLCNSSPNLRVLGIDCN 62 (141)
T ss_pred CCCCEEEEeCCChhHHHHHHHHHHHhcCCCCeEEEEECC
Confidence 4678999999999999999998 555788999976
No 174
>COG4106 Tam Trans-aconitate methyltransferase [General function prediction only]
Probab=92.76 E-value=0.079 Score=46.93 Aligned_cols=56 Identities=9% Similarity=-0.061 Sum_probs=40.7
Q ss_pred ccccc---CCCceeEeeccCCchhHHHhHHhh-hhheeeeecc----cccccCCCcceEEEEccc
Q 035595 74 ELSNC---HEAALDAKGNFGNGSLIADFSVVI-KMKILASLVD----GEYYNNGHENFSFLVDGE 130 (178)
Q Consensus 74 EL~~~---~~~~~vLEvGCG~Gnta~pll~~~-~~~i~AtD~s----~k~~~~g~~N~~F~~~~~ 130 (178)
||... ....+|.++|||+||..--|++.- ...|+++|-| +++ ..-..|.+|..++.
T Consensus 21 dLla~Vp~~~~~~v~DLGCGpGnsTelL~~RwP~A~i~GiDsS~~Mla~A-a~rlp~~~f~~aDl 84 (257)
T COG4106 21 DLLARVPLERPRRVVDLGCGPGNSTELLARRWPDAVITGIDSSPAMLAKA-AQRLPDATFEEADL 84 (257)
T ss_pred HHHhhCCccccceeeecCCCCCHHHHHHHHhCCCCeEeeccCCHHHHHHH-HHhCCCCceecccH
Confidence 66543 356899999999999988888753 4578898866 444 44566788877665
No 175
>PF01596 Methyltransf_3: O-methyltransferase; InterPro: IPR002935 Members of this family are O-methyltransferases. The family includes also bacterial O-methyltransferases that may be involved in antibiotic production [].; GO: 0008171 O-methyltransferase activity; PDB: 1SUI_C 1SUS_D 3CBG_A 2GPY_B 3TR6_A 2AVD_A 3DUL_B 3DUW_B 2ZTH_A 1VID_A ....
Probab=92.42 E-value=0.068 Score=44.74 Aligned_cols=73 Identities=11% Similarity=0.032 Sum_probs=47.2
Q ss_pred CCCceeEeeccCCchhHHHhHHhh--hhheeeeeccc--------ccccCCCc-ceEEEEcccccCCC---CCC-CCCcc
Q 035595 79 HEAALDAKGNFGNGSLIADFSVVI--KMKILASLVDG--------EYYNNGHE-NFSFLVDGEYYSNC---PAV-SGSQN 143 (178)
Q Consensus 79 ~~~~~vLEvGCG~Gnta~pll~~~--~~~i~AtD~s~--------k~~~~g~~-N~~F~~~~~~~s~~---p~~-~~s~~ 143 (178)
..+.+|||||||+|-+++-++... ..+++.++.+. -....|.. +++|..+.+...++ +.- ++.-|
T Consensus 44 ~~~k~vLEIGt~~GySal~la~~l~~~g~i~tiE~~~~~~~~A~~~~~~ag~~~~I~~~~gda~~~l~~l~~~~~~~~fD 123 (205)
T PF01596_consen 44 TRPKRVLEIGTFTGYSALWLAEALPEDGKITTIEIDPERAEIARENFRKAGLDDRIEVIEGDALEVLPELANDGEEGQFD 123 (205)
T ss_dssp HT-SEEEEESTTTSHHHHHHHHTSTTTSEEEEEESSHHHHHHHHHHHHHTTGGGGEEEEES-HHHHHHHHHHTTTTTSEE
T ss_pred cCCceEEEeccccccHHHHHHHhhcccceEEEecCcHHHHHHHHHHHHhcCCCCcEEEEEeccHhhHHHHHhccCCCcee
Confidence 467899999999999999999763 35888888662 12334554 58888876642222 112 45677
Q ss_pred eEeeeehh
Q 035595 144 YVILANLK 151 (178)
Q Consensus 144 ~vil~nl~ 151 (178)
+|.|---|
T Consensus 124 ~VFiDa~K 131 (205)
T PF01596_consen 124 FVFIDADK 131 (205)
T ss_dssp EEEEESTG
T ss_pred EEEEcccc
Confidence 77664433
No 176
>PLN02366 spermidine synthase
Probab=91.47 E-value=0.19 Score=44.58 Aligned_cols=70 Identities=10% Similarity=0.132 Sum_probs=42.6
Q ss_pred ccCCCceeEeeccCCchhHHHhHHhhh-hheeeeeccc-------ccc---cCC--CcceEEEEcccccCCCCCC-CCCc
Q 035595 77 NCHEAALDAKGNFGNGSLIADFSVVIK-MKILASLVDG-------EYY---NNG--HENFSFLVDGEYYSNCPAV-SGSQ 142 (178)
Q Consensus 77 ~~~~~~~vLEvGCG~Gnta~pll~~~~-~~i~AtD~s~-------k~~---~~g--~~N~~F~~~~~~~s~~p~~-~~s~ 142 (178)
....+.+||.||||.|.++.-++.+.. .+++.+|++. +.- ..+ ..++.+..++...-+- .. .+.-
T Consensus 88 ~~~~pkrVLiIGgG~G~~~rellk~~~v~~V~~VEiD~~Vi~~ar~~f~~~~~~~~dpRv~vi~~Da~~~l~-~~~~~~y 166 (308)
T PLN02366 88 SIPNPKKVLVVGGGDGGVLREIARHSSVEQIDICEIDKMVIDVSKKFFPDLAVGFDDPRVNLHIGDGVEFLK-NAPEGTY 166 (308)
T ss_pred hCCCCCeEEEEcCCccHHHHHHHhCCCCCeEEEEECCHHHHHHHHHhhhhhccccCCCceEEEEChHHHHHh-hccCCCC
Confidence 345678999999999999999988632 3677767552 110 112 2357777766521111 11 3567
Q ss_pred ceEee
Q 035595 143 NYVIL 147 (178)
Q Consensus 143 ~~vil 147 (178)
|++|+
T Consensus 167 DvIi~ 171 (308)
T PLN02366 167 DAIIV 171 (308)
T ss_pred CEEEE
Confidence 87775
No 177
>COG0500 SmtA SAM-dependent methyltransferases [Secondary metabolites biosynthesis, transport, and catabolism / General function prediction only]
Probab=91.11 E-value=0.23 Score=31.91 Aligned_cols=28 Identities=11% Similarity=0.019 Sum_probs=18.2
Q ss_pred eEeeccCCchhHHHhHHhhh--hheeeeecc
Q 035595 84 DAKGNFGNGSLIADFSVVIK--MKILASLVD 112 (178)
Q Consensus 84 vLEvGCG~Gnta~pll~~~~--~~i~AtD~s 112 (178)
+|++|||+|.+. -+..... ..++++|.+
T Consensus 52 ~ld~~~g~g~~~-~~~~~~~~~~~~~~~d~~ 81 (257)
T COG0500 52 VLDIGCGTGRLA-LLARLGGRGAYVVGVDLS 81 (257)
T ss_pred eEEecCCcCHHH-HHHHhCCCCceEEEEeCC
Confidence 999999999976 2222221 256667766
No 178
>PF05185 PRMT5: PRMT5 arginine-N-methyltransferase; InterPro: IPR007857 The human homologue of Saccharomyces cerevisiae Skb1 (Shk1 kinase-binding protein 1) is a protein methyltransferase []. These proteins seem to play a role in Jak signalling.; GO: 0008168 methyltransferase activity, 0005737 cytoplasm; PDB: 2Y1W_C 2Y1X_D 2V7E_B 2V74_H 3R0Q_G 3B3F_B 3B3J_A 3B3G_A 3UA3_A 3UA4_B ....
Probab=90.94 E-value=0.43 Score=44.53 Aligned_cols=63 Identities=11% Similarity=0.062 Sum_probs=38.6
Q ss_pred CCceeEeeccCCchhHHHhHHhh-----hhheeeeecc--------cccccCCC-cceEEEEcccc-cCCCCCCCCCcce
Q 035595 80 EAALDAKGNFGNGSLIADFSVVI-----KMKILASLVD--------GEYYNNGH-ENFSFLVDGEY-YSNCPAVSGSQNY 144 (178)
Q Consensus 80 ~~~~vLEvGCG~Gnta~pll~~~-----~~~i~AtD~s--------~k~~~~g~-~N~~F~~~~~~-~s~~p~~~~s~~~ 144 (178)
....||.||||+|=.+.-.+... +.+++|+..+ .+...+|. .+|++..+... ..+ |.-+|+
T Consensus 186 ~~~vVldVGAGrGpL~~~al~A~~~~~~a~~VyAVEkn~~A~~~l~~~v~~n~w~~~V~vi~~d~r~v~l----pekvDI 261 (448)
T PF05185_consen 186 KDKVVLDVGAGRGPLSMFALQAGARAGGAVKVYAVEKNPNAVVTLQKRVNANGWGDKVTVIHGDMREVEL----PEKVDI 261 (448)
T ss_dssp TT-EEEEES-TTSHHHHHHHHTTHHHCCESEEEEEESSTHHHHHHHHHHHHTTTTTTEEEEES-TTTSCH----SS-EEE
T ss_pred cceEEEEeCCCccHHHHHHHHHHHHhCCCeEEEEEcCCHhHHHHHHHHHHhcCCCCeEEEEeCcccCCCC----CCceeE
Confidence 35789999999999987776653 4588898855 22245555 44777775542 111 446777
Q ss_pred Ee
Q 035595 145 VI 146 (178)
Q Consensus 145 vi 146 (178)
+|
T Consensus 262 IV 263 (448)
T PF05185_consen 262 IV 263 (448)
T ss_dssp EE
T ss_pred EE
Confidence 76
No 179
>PF02475 Met_10: Met-10+ like-protein; InterPro: IPR003402 This entry represents the Trm5 family. Trm5 specifically methylates the N1 position of guanosine-37 in various tRNAs [, , ]. Another members of this family, tRNA wybutosine-synthesizing protein 2 (Tyw2) and its homologues, are S-adenosyl-L-methionine-dependent transferases that act as a component of the wybutosine biosynthesis pathway [, ]. tRNA wybutosine-synthesizing protein 2 was originally thought to be a methyltransferase [].; GO: 0016740 transferase activity; PDB: 3A27_A 2ZZN_B 2YX1_A 2ZZM_A 3AY0_B 3K6R_A 3A26_A 3A25_A.
Probab=90.01 E-value=0.5 Score=39.69 Aligned_cols=66 Identities=15% Similarity=0.100 Sum_probs=38.7
Q ss_pred CCCceeEeeccCCchhHHHhHHhh-hhheeeeecc--------cccccCCCcc-eEEEEcccccCCCCCCCCCcceEee
Q 035595 79 HEAALDAKGNFGNGSLIADFSVVI-KMKILASLVD--------GEYYNNGHEN-FSFLVDGEYYSNCPAVSGSQNYVIL 147 (178)
Q Consensus 79 ~~~~~vLEvGCG~Gnta~pll~~~-~~~i~AtD~s--------~k~~~~g~~N-~~F~~~~~~~s~~p~~~~s~~~vil 147 (178)
.+...||++-||+|-.++|++... ...++|.|.. +-+.-+++++ +.....+.. ..++ .+..|-|||
T Consensus 100 ~~~e~VlD~faGIG~f~l~~ak~~~~~~V~A~d~Np~a~~~L~~Ni~lNkv~~~i~~~~~D~~-~~~~--~~~~drvim 175 (200)
T PF02475_consen 100 KPGEVVLDMFAGIGPFSLPIAKHGKAKRVYAVDLNPDAVEYLKENIRLNKVENRIEVINGDAR-EFLP--EGKFDRVIM 175 (200)
T ss_dssp -TT-EEEETT-TTTTTHHHHHHHT-SSEEEEEES-HHHHHHHHHHHHHTT-TTTEEEEES-GG-G-----TT-EEEEEE
T ss_pred CcceEEEEccCCccHHHHHHhhhcCccEEEEecCCHHHHHHHHHHHHHcCCCCeEEEEcCCHH-HhcC--ccccCEEEE
Confidence 467899999999999999999832 2379999966 3334456665 555555543 2333 555665554
No 180
>PF02384 N6_Mtase: N-6 DNA Methylase; InterPro: IPR003356 This domain is fpound in N-6 adenine-specific DNA methylase (2.1.1.72 from EC) from Type I and Type IC restriction systems. These enzymes are responsible for the methylation of specific DNA sequences in order to prevent the host from digesting its own genome via its restriction enzymes. These methylases have the same sequence specificity as their corresponding restriction enzymes. The type I restriction and modification system is composed of three polypeptides R, M and S. The M and S subunits together form a methyltransferase that methylates two adenine residues in complementary strands of a bipartite DNA recognition sequence. In the presence of the R subunit, the complex can also act as an endonuclease, binding to the same target sequence but cutting the DNA some distance from this site. Whether the DNA is cut or modified depends on the methylation state of the target sequence. When the target site is unmodified, the DNA is cut. When the target site is hemimethylated, the complex acts as a maintenance methyltransferase, modifying the DNA so that both strands become methylated.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2F8L_A 2Y7C_C 2Y7H_C 2AR0_B 3KHK_A 3LKD_A 2OKC_B.
Probab=89.80 E-value=0.25 Score=42.01 Aligned_cols=48 Identities=19% Similarity=0.281 Sum_probs=31.6
Q ss_pred CCCccccc------ccccccCCCceeEeeccCCchhHHHhHHhh--------hhheeeeecc
Q 035595 65 SGKFFKFT------AELSNCHEAALDAKGNFGNGSLIADFSVVI--------KMKILASLVD 112 (178)
Q Consensus 65 ~~~FFKdR------PEL~~~~~~~~vLEvGCG~Gnta~pll~~~--------~~~i~AtD~s 112 (178)
.+.||-.+ -+|....+..+||+-.||+|++....+..+ ...+++.|++
T Consensus 25 ~G~~~TP~~i~~l~~~~~~~~~~~~VlDPacGsG~fL~~~~~~i~~~~~~~~~~~i~G~ei~ 86 (311)
T PF02384_consen 25 LGQFYTPREIVDLMVKLLNPKKGDSVLDPACGSGGFLVAAMEYIKEKRNKIKEINIYGIEID 86 (311)
T ss_dssp CGGC---HHHHHHHHHHHTT-TTEEEEETT-TTSHHHHHHHHHHHTCHHHHCCEEEEEEES-
T ss_pred cceeehHHHHHHHHHhhhhccccceeechhhhHHHHHHHHHHhhcccccccccceeEeecCc
Confidence 46777766 344444567789999999999999988742 4577888876
No 181
>COG2519 GCD14 tRNA(1-methyladenosine) methyltransferase and related methyltransferases [Translation, ribosomal structure and biogenesis]
Probab=89.37 E-value=0.84 Score=40.52 Aligned_cols=89 Identities=10% Similarity=0.074 Sum_probs=51.8
Q ss_pred HHHHHHhhcCCCCcccccc---cccccCCCceeEeeccCCchhHHHhHHhh--hhheeeeeccc--------ccccCCCc
Q 035595 55 AWKRFHSRHSSGKFFKFTA---ELSNCHEAALDAKGNFGNGSLIADFSVVI--KMKILASLVDG--------EYYNNGHE 121 (178)
Q Consensus 55 ~Wd~Fy~rh~~~~FFKdRP---EL~~~~~~~~vLEvGCG~Gnta~pll~~~--~~~i~AtD~s~--------k~~~~g~~ 121 (178)
.|=.-++|..+-=+.||-- ..+...+.++|||.|-|+|+...=|+..+ .-+++..++.+ .....|..
T Consensus 66 d~~~~~~R~tQiIyPKD~~~I~~~~gi~pg~rVlEAGtGSG~lt~~La~~vg~~G~v~tyE~r~d~~k~A~~Nl~~~~l~ 145 (256)
T COG2519 66 DYLLSMKRRTQIIYPKDAGYIVARLGISPGSRVLEAGTGSGALTAYLARAVGPEGHVTTYEIREDFAKTARENLSEFGLG 145 (256)
T ss_pred HHHHhCcCCCceecCCCHHHHHHHcCCCCCCEEEEcccCchHHHHHHHHhhCCCceEEEEEecHHHHHHHHHHHHHhccc
Confidence 3333355554444444441 11244678999999999999999999654 24667766552 22223555
Q ss_pred c-eEEEEcccccCCCCCC-CCCcceEee
Q 035595 122 N-FSFLVDGEYYSNCPAV-SGSQNYVIL 147 (178)
Q Consensus 122 N-~~F~~~~~~~s~~p~~-~~s~~~vil 147 (178)
| +++...+. +.++ +.++|.++|
T Consensus 146 d~v~~~~~Dv----~~~~~~~~vDav~L 169 (256)
T COG2519 146 DRVTLKLGDV----REGIDEEDVDAVFL 169 (256)
T ss_pred cceEEEeccc----cccccccccCEEEE
Confidence 5 66655332 2233 446676665
No 182
>KOG2940 consensus Predicted methyltransferase [General function prediction only]
Probab=89.06 E-value=0.38 Score=43.51 Aligned_cols=62 Identities=13% Similarity=0.030 Sum_probs=44.6
Q ss_pred CceeEeeccCCchhHHHhHHhhhhheeeeecc-------cccccCCCcceEEEEcccccCCCCCC-CCCcceEe
Q 035595 81 AALDAKGNFGNGSLIADFSVVIKMKILASLVD-------GEYYNNGHENFSFLVDGEYYSNCPAV-SGSQNYVI 146 (178)
Q Consensus 81 ~~~vLEvGCG~Gnta~pll~~~~~~i~AtD~s-------~k~~~~g~~N~~F~~~~~~~s~~p~~-~~s~~~vi 146 (178)
...+++||||.|-..--|+...-.+++-+|-| .++.+++++...|+.+.+- ++ + +.|+|++|
T Consensus 73 fp~a~diGcs~G~v~rhl~~e~vekli~~DtS~~M~~s~~~~qdp~i~~~~~v~DEE~--Ld--f~ens~DLii 142 (325)
T KOG2940|consen 73 FPTAFDIGCSLGAVKRHLRGEGVEKLIMMDTSYDMIKSCRDAQDPSIETSYFVGDEEF--LD--FKENSVDLII 142 (325)
T ss_pred CcceeecccchhhhhHHHHhcchhheeeeecchHHHHHhhccCCCceEEEEEecchhc--cc--ccccchhhhh
Confidence 45789999999998877776543477777865 5667788888888888773 22 4 55666654
No 183
>PF05971 Methyltransf_10: Protein of unknown function (DUF890); InterPro: IPR010286 This family consists of several conserved hypothetical proteins from both eukaryotes and prokaryotes. The function of members of this family are unknown but are predicted to be SAM-dependent methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 2H00_A.
Probab=88.98 E-value=0.13 Score=46.02 Aligned_cols=31 Identities=16% Similarity=0.022 Sum_probs=21.9
Q ss_pred CceeEeeccCCchhHHHhHHhh--hhheeeeecc
Q 035595 81 AALDAKGNFGNGSLIADFSVVI--KMKILASLVD 112 (178)
Q Consensus 81 ~~~vLEvGCG~Gnta~pll~~~--~~~i~AtD~s 112 (178)
..++|+||||+ |.++|||... ...++|||++
T Consensus 103 ~v~glDIGTGA-scIYpLLg~~~~~W~fvaTdID 135 (299)
T PF05971_consen 103 KVRGLDIGTGA-SCIYPLLGAKLYGWSFVATDID 135 (299)
T ss_dssp --EEEEES-TT-TTHHHHHHHHHH--EEEEEES-
T ss_pred ceEeecCCccH-HHHHHHHhhhhcCCeEEEecCC
Confidence 46899999997 7899999853 6788999987
No 184
>KOG3420 consensus Predicted RNA methylase [Translation, ribosomal structure and biogenesis]
Probab=88.04 E-value=0.3 Score=41.34 Aligned_cols=67 Identities=16% Similarity=0.036 Sum_probs=40.0
Q ss_pred CCCceeEeeccCCchhHHHhHHhhhhheeeeeccccc-------ccCCCcceEEEEcccccCCCCCCCCCcceEee
Q 035595 79 HEAALDAKGNFGNGSLIADFSVVIKMKILASLVDGEY-------YNNGHENFSFLVDGEYYSNCPAVSGSQNYVIL 147 (178)
Q Consensus 79 ~~~~~vLEvGCG~Gnta~pll~~~~~~i~AtD~s~k~-------~~~g~~N~~F~~~~~~~s~~p~~~~s~~~vil 147 (178)
-+.+.|+++|||+|-.-+-..---...+++.|+...+ +.+---|++|.++... .+++.. +-.|.+|+
T Consensus 47 iEgkkl~DLgcgcGmLs~a~sm~~~e~vlGfDIdpeALEIf~rNaeEfEvqidlLqcdil-dle~~~-g~fDtavi 120 (185)
T KOG3420|consen 47 IEGKKLKDLGCGCGMLSIAFSMPKNESVLGFDIDPEALEIFTRNAEEFEVQIDLLQCDIL-DLELKG-GIFDTAVI 120 (185)
T ss_pred ccCcchhhhcCchhhhHHHhhcCCCceEEeeecCHHHHHHHhhchHHhhhhhheeeeecc-chhccC-CeEeeEEe
Confidence 3578899999999976644333223478899977222 2222224688887765 444333 55555544
No 185
>PF09243 Rsm22: Mitochondrial small ribosomal subunit Rsm22; InterPro: IPR015324 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. Rsm22 has been identified as a mitochondrial small ribosomal subunit [] and is a methyltransferase. In Schizosaccharomyces pombe (Fission yeast), Rsm22 is tandemly fused to Cox11 (a factor required for copper insertion into cytochrome oxidase) and the two proteins are proteolytically cleaved after import into the mitochondria []. This entry consists of mitochondrial Rsm22 and homologous sequences from bacteria.; GO: 0008168 methyltransferase activity, 0006412 translation
Probab=87.70 E-value=0.74 Score=39.74 Aligned_cols=32 Identities=9% Similarity=-0.155 Sum_probs=23.2
Q ss_pred CceeEeeccCCchhHHHhHHhh--hhheeeeecc
Q 035595 81 AALDAKGNFGNGSLIADFSVVI--KMKILASLVD 112 (178)
Q Consensus 81 ~~~vLEvGCG~Gnta~pll~~~--~~~i~AtD~s 112 (178)
+.+||++|||.|..+.-....- ...++++|.+
T Consensus 34 P~~vLD~GsGpGta~wAa~~~~~~~~~~~~vd~s 67 (274)
T PF09243_consen 34 PRSVLDFGSGPGTALWAAREVWPSLKEYTCVDRS 67 (274)
T ss_pred CceEEEecCChHHHHHHHHHHhcCceeeeeecCC
Confidence 5689999999998776655432 2366778866
No 186
>PRK11760 putative 23S rRNA C2498 ribose 2'-O-ribose methyltransferase; Provisional
Probab=87.68 E-value=1.6 Score=40.44 Aligned_cols=66 Identities=8% Similarity=-0.068 Sum_probs=43.5
Q ss_pred CCCceeEeeccCCchhHHHhHHhhhhheeeeecccccc-cCCCcceEEEEcccccCCCCCCCCCcceEee
Q 035595 79 HEAALDAKGNFGNGSLIADFSVVIKMKILASLVDGEYY-NNGHENFSFLVDGEYYSNCPAVSGSQNYVIL 147 (178)
Q Consensus 79 ~~~~~vLEvGCG~Gnta~pll~~~~~~i~AtD~s~k~~-~~g~~N~~F~~~~~~~s~~p~~~~s~~~vil 147 (178)
.+..++|+|||++|.-..-|+..- +.++|+|...-.. -....++.+.......-.|+ .+.+|++|.
T Consensus 210 ~~g~~vlDLGAsPGGWT~~L~~rG-~~V~AVD~g~l~~~L~~~~~V~h~~~d~fr~~p~--~~~vDwvVc 276 (357)
T PRK11760 210 APGMRAVDLGAAPGGWTYQLVRRG-MFVTAVDNGPMAQSLMDTGQVEHLRADGFKFRPP--RKNVDWLVC 276 (357)
T ss_pred CCCCEEEEeCCCCcHHHHHHHHcC-CEEEEEechhcCHhhhCCCCEEEEeccCcccCCC--CCCCCEEEE
Confidence 356799999999999999999876 4999999542110 01223466666555433443 566777663
No 187
>TIGR02987 met_A_Alw26 type II restriction m6 adenine DNA methyltransferase, Alw26I/Eco31I/Esp3I family. Members of this family are the m6-adenine DNA methyltransferase protein, or domain of a fusion protein that also carries m5 cytosine methyltransferase activity, of type II restriction systems of the Alw26I/Eco31I/Esp3I family. A methyltransferase of this family is alway accompanied by a type II restriction endonuclease from the Alw26I/Eco31I/Esp3I family (TIGR02986) and by an adenine-specific modification methyltransferase. Members of this family are unusual in that regions of similarity to homologs outside this family are circularly permuted.
Probab=87.52 E-value=0.42 Score=44.34 Aligned_cols=33 Identities=21% Similarity=0.205 Sum_probs=26.0
Q ss_pred CCceeEeeccCCchhHHHhHHhhh---------hheeeeecc
Q 035595 80 EAALDAKGNFGNGSLIADFSVVIK---------MKILASLVD 112 (178)
Q Consensus 80 ~~~~vLEvGCG~Gnta~pll~~~~---------~~i~AtD~s 112 (178)
...+|||.|||+|+++..++.... ..+++.|++
T Consensus 31 ~~~~ilDP~cGsG~fl~~~~~~~~~~~~~~~~~~~i~g~DId 72 (524)
T TIGR02987 31 TKTKIIDPCCGDGRLIAALLKKNEEINYFKEVELNIYFADID 72 (524)
T ss_pred cceEEEeCCCCccHHHHHHHHHHHhcCCcccceeeeeeechh
Confidence 346899999999999999987542 356777866
No 188
>KOG2899 consensus Predicted methyltransferase [General function prediction only]
Probab=87.50 E-value=0.4 Score=43.19 Aligned_cols=69 Identities=14% Similarity=0.104 Sum_probs=48.6
Q ss_pred CCceeEeeccCCchhHHHhHHhh-hhheeeeecccccccCCCcceEEEEcccccCCCCCC--CCCcceEeeee
Q 035595 80 EAALDAKGNFGNGSLIADFSVVI-KMKILASLVDGEYYNNGHENFSFLVDGEYYSNCPAV--SGSQNYVILAN 149 (178)
Q Consensus 80 ~~~~vLEvGCG~Gnta~pll~~~-~~~i~AtD~s~k~~~~g~~N~~F~~~~~~~s~~p~~--~~s~~~vil~n 149 (178)
.+..+|+|||-.|-..+-|+... ...++++|++..+-.....+++|-.+.+. +.+++- +--++.+-|.|
T Consensus 58 ~~~~~LDIGCNsG~lt~~iak~F~~r~iLGvDID~~LI~~Ark~~r~~~~~~~-~~~~~~~~~~~~~~~~is~ 129 (288)
T KOG2899|consen 58 EPKQALDIGCNSGFLTLSIAKDFGPRRILGVDIDPVLIQRARKEIRFPCDHET-EVSGKFPASFGVQFGPISQ 129 (288)
T ss_pred CcceeEeccCCcchhHHHHHHhhccceeeEeeccHHHHHHHHHhccccccccc-cccCCCccccccccccccc
Confidence 46789999999999999999864 34799999995554444557888877765 333222 44455555555
No 189
>PF03291 Pox_MCEL: mRNA capping enzyme; InterPro: IPR004971 This is a family of viral mRNA capping enzymes. The enzyme catalyses the first two reactions in the mRNA cap formation pathway. It is a heterodimer consisting of a large and small subunit. This entry is the large subunit. ; GO: 0006370 mRNA capping; PDB: 3EPP_A 3BGV_C 2VDW_C 1RI5_A 1RI3_A 1RI1_A 1Z3C_A 1RI2_A 2HV9_A 1RI4_A.
Probab=87.30 E-value=0.58 Score=41.99 Aligned_cols=33 Identities=6% Similarity=-0.028 Sum_probs=24.4
Q ss_pred CCceeEeeccCCchhHHHhHHhhhhheeeeecc
Q 035595 80 EAALDAKGNFGNGSLIADFSVVIKMKILASLVD 112 (178)
Q Consensus 80 ~~~~vLEvGCG~Gnta~pll~~~~~~i~AtD~s 112 (178)
+..+|||+|||-|.=..--....-.+++++|++
T Consensus 62 ~~~~VLDl~CGkGGDL~Kw~~~~i~~~vg~Dis 94 (331)
T PF03291_consen 62 PGLTVLDLCCGKGGDLQKWQKAKIKHYVGIDIS 94 (331)
T ss_dssp TT-EEEEET-TTTTTHHHHHHTT-SEEEEEES-
T ss_pred CCCeEEEecCCCchhHHHHHhcCCCEEEEEeCC
Confidence 778999999999998777776543489999977
No 190
>TIGR03439 methyl_EasF probable methyltransferase domain, EasF family. This model represents an uncharacterized domain of about 300 amino acids with homology to S-adenosylmethionine-dependent methyltransferases. Proteins with this domain are exclusively fungal. A few, such as EasF from Neotyphodium lolii, are associated with the biosynthesis of ergot alkaloids, a class of fungal secondary metabolites. EasF may, in fact, be the AdoMet:dimethylallyltryptophan N-methyltransferase, the enzyme that follows tryptophan dimethylallyltransferase (DMATS) in ergot alkaloid biosynthesis. Several other members of this family, including mug158 (meiotically up-regulated gene 158 protein) from Schizosaccharomyces pombe, contain an additional uncharacterized domain DUF323 (pfam03781).
Probab=86.65 E-value=0.85 Score=40.91 Aligned_cols=40 Identities=10% Similarity=0.075 Sum_probs=30.0
Q ss_pred cccccc-CCCceeEeeccCCchhHHHhHHhhh-----hheeeeecc
Q 035595 73 AELSNC-HEAALDAKGNFGNGSLIADFSVVIK-----MKILASLVD 112 (178)
Q Consensus 73 PEL~~~-~~~~~vLEvGCG~Gnta~pll~~~~-----~~i~AtD~s 112 (178)
++++.. .+...|+|+|||.|.=.-.||.... ..++++|+|
T Consensus 68 ~~Ia~~i~~~~~lIELGsG~~~Kt~~LL~aL~~~~~~~~Y~plDIS 113 (319)
T TIGR03439 68 SDIAASIPSGSMLVELGSGNLRKVGILLEALERQKKSVDYYALDVS 113 (319)
T ss_pred HHHHHhcCCCCEEEEECCCchHHHHHHHHHHHhcCCCceEEEEECC
Confidence 344433 3456899999999999888887653 358999999
No 191
>PF01170 UPF0020: Putative RNA methylase family UPF0020; InterPro: IPR000241 This domain is probably a methylase. It is associated with the THUMP domain that also occurs with RNA modification domains [].; PDB: 3LDU_A 3LDG_A 3K0B_A 3V8V_B 3V97_A 3TLJ_A 3TM5_B 3TM4_A 3TMA_A.
Probab=85.73 E-value=1.2 Score=35.95 Aligned_cols=66 Identities=15% Similarity=0.232 Sum_probs=37.6
Q ss_pred CCCceeEeeccCCchhHHHhHHhh-hhh---------eeeeecc--------cccccCCCcc-eEEEEcccccCCCCCCC
Q 035595 79 HEAALDAKGNFGNGSLIADFSVVI-KMK---------ILASLVD--------GEYYNNGHEN-FSFLVDGEYYSNCPAVS 139 (178)
Q Consensus 79 ~~~~~vLEvGCG~Gnta~pll~~~-~~~---------i~AtD~s--------~k~~~~g~~N-~~F~~~~~~~s~~p~~~ 139 (178)
.+...||+-=||+|+..+.-+-.. ... ++++|++ ..+...|+.. +.|.+.... .++ -.+
T Consensus 27 ~~~~~vlDP~CGsGtiliEaa~~~~~~~~~~~~~~~~~~g~Di~~~~v~~a~~N~~~ag~~~~i~~~~~D~~-~l~-~~~ 104 (179)
T PF01170_consen 27 RPGDVVLDPFCGSGTILIEAALMGANIPPLNDINELKIIGSDIDPKAVRGARENLKAAGVEDYIDFIQWDAR-ELP-LPD 104 (179)
T ss_dssp -TTS-EEETT-TTSHHHHHHHHHHTTTSTTTH-CH--EEEEESSHHHHHHHHHHHHHTT-CGGEEEEE--GG-GGG-GTT
T ss_pred CCCCEEeecCCCCCHHHHHHHHHhhCcccccccccccEEecCCCHHHHHHHHHHHHhcccCCceEEEecchh-hcc-ccc
Confidence 456799999999999987755432 122 7899977 2233445544 678775554 344 225
Q ss_pred CCcceEe
Q 035595 140 GSQNYVI 146 (178)
Q Consensus 140 ~s~~~vi 146 (178)
+++|++|
T Consensus 105 ~~~d~Iv 111 (179)
T PF01170_consen 105 GSVDAIV 111 (179)
T ss_dssp SBSCEEE
T ss_pred CCCCEEE
Confidence 6777544
No 192
>PF09445 Methyltransf_15: RNA cap guanine-N2 methyltransferase; InterPro: IPR019012 RNA cap guanine-N2 methyltransferases such as Schizosaccharomyces pombe (Fission yeast) trimethylguanosine synthase (Tgs1) and Giardia lamblia (Giardia intestinalis) Tgs2, catalyse the methylation step(s) for the conversion of the 7-monomethylguanosine (m(7)G) caps of snRNAs and snoRNAs to a 2,2,7-trimethylguanosine (m(2,2,7)G) cap structure [, , ]. Trimethylguanosine synthase is specific for guanine, and N7 methylation must precede N2 methylation. This enzyme is required for pre-mRNA splicing, pre-rRNA processing and small ribosomal subunit synthesis. As such, this enzyme plays a role in transcriptional regulation. ; GO: 0008168 methyltransferase activity, 0001510 RNA methylation, 0009452 RNA capping; PDB: 3EGI_B 3GDH_A.
Probab=85.36 E-value=1.1 Score=36.91 Aligned_cols=48 Identities=17% Similarity=0.243 Sum_probs=33.8
Q ss_pred eeEeeccCCchhHHHhHHhhhhheeeeeccc--------ccccCCC-cceEEEEcccc
Q 035595 83 LDAKGNFGNGSLIADFSVVIKMKILASLVDG--------EYYNNGH-ENFSFLVDGEY 131 (178)
Q Consensus 83 ~vLEvGCG~Gnta~pll~~~~~~i~AtD~s~--------k~~~~g~-~N~~F~~~~~~ 131 (178)
.|+++-||+|.-++-++.... +++|+|++. .+.-=|+ .|++|..+...
T Consensus 2 ~vlD~fcG~GGNtIqFA~~~~-~Viaidid~~~~~~a~hNa~vYGv~~~I~~i~gD~~ 58 (163)
T PF09445_consen 2 TVLDAFCGVGGNTIQFARTFD-RVIAIDIDPERLECAKHNAEVYGVADNIDFICGDFF 58 (163)
T ss_dssp EEEETT-TTSHHHHHHHHTT--EEEEEES-HHHHHHHHHHHHHTT-GGGEEEEES-HH
T ss_pred EEEEeccCcCHHHHHHHHhCC-eEEEEECCHHHHHHHHHHHHHcCCCCcEEEEeCCHH
Confidence 689999999999999999986 899999771 1111253 47999998774
No 193
>PF03141 Methyltransf_29: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR004159 Members of this family of hypothetical plant proteins are putative methyltransferases. ; GO: 0008168 methyltransferase activity
Probab=85.15 E-value=0.54 Score=45.26 Aligned_cols=23 Identities=13% Similarity=-0.153 Sum_probs=20.2
Q ss_pred CCceeEeeccCCchhHHHhHHhh
Q 035595 80 EAALDAKGNFGNGSLIADFSVVI 102 (178)
Q Consensus 80 ~~~~vLEvGCG~Gnta~pll~~~ 102 (178)
.-..+|++|||+||.+.-|+..+
T Consensus 117 ~iR~~LDvGcG~aSF~a~l~~r~ 139 (506)
T PF03141_consen 117 GIRTALDVGCGVASFGAYLLERN 139 (506)
T ss_pred ceEEEEeccceeehhHHHHhhCC
Confidence 44689999999999999999865
No 194
>PF08123 DOT1: Histone methylation protein DOT1 ; InterPro: IPR013110 The DOT1 domain regulates gene expression by methylating histone H3 []. H3 methylation by DOT1 has been shown to be required for the DNA damage checkpoint in yeast [].; GO: 0018024 histone-lysine N-methyltransferase activity; PDB: 4ER3_A 4ER6_A 4EQZ_A 1NW3_A 3UWP_A 4ER5_A 3QOX_A 3SX0_A 4ER7_A 3SR4_A ....
Probab=85.07 E-value=0.82 Score=38.42 Aligned_cols=33 Identities=9% Similarity=-0.029 Sum_probs=20.1
Q ss_pred cCCCceeEeeccCCchhHHHhHHhhhhh-eeeee
Q 035595 78 CHEAALDAKGNFGNGSLIADFSVVIKMK-ILASL 110 (178)
Q Consensus 78 ~~~~~~vLEvGCG~Gnta~pll~~~~~~-i~AtD 110 (178)
.++.+..++||||+|+.++-.+-..... -+++.
T Consensus 40 l~~~dvF~DlGSG~G~~v~~aal~~~~~~~~GIE 73 (205)
T PF08123_consen 40 LTPDDVFYDLGSGVGNVVFQAALQTGCKKSVGIE 73 (205)
T ss_dssp --TT-EEEEES-TTSHHHHHHHHHH--SEEEEEE
T ss_pred CCCCCEEEECCCCCCHHHHHHHHHcCCcEEEEEE
Confidence 3567899999999999988776544322 44444
No 195
>PRK11933 yebU rRNA (cytosine-C(5)-)-methyltransferase RsmF; Reviewed
Probab=85.05 E-value=1.6 Score=41.07 Aligned_cols=77 Identities=13% Similarity=0.133 Sum_probs=52.1
Q ss_pred ccCCCceeEeeccCCchhHHHhHHhh--hhheeeeecc--------cccccCCCcceEEEEcccccCCCCCCCCCcceEe
Q 035595 77 NCHEAALDAKGNFGNGSLIADFSVVI--KMKILASLVD--------GEYYNNGHENFSFLVDGEYYSNCPAVSGSQNYVI 146 (178)
Q Consensus 77 ~~~~~~~vLEvGCG~Gnta~pll~~~--~~~i~AtD~s--------~k~~~~g~~N~~F~~~~~~~s~~p~~~~s~~~vi 146 (178)
...+..+||+++||.|+=..-|+... +..++|.|++ +....-|+.|+..+..... .+...+++
T Consensus 110 ~~~pg~~VLD~CAAPGgKTt~la~~l~~~g~lvA~D~~~~R~~~L~~nl~r~G~~nv~v~~~D~~-~~~~~~~~------ 182 (470)
T PRK11933 110 DDNAPQRVLDMAAAPGSKTTQIAALMNNQGAIVANEYSASRVKVLHANISRCGVSNVALTHFDGR-VFGAALPE------ 182 (470)
T ss_pred CCCCCCEEEEeCCCccHHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEeCchh-hhhhhchh------
Confidence 44577899999999999998888754 3479999977 3445568888777664432 12222232
Q ss_pred eeehhhhhhhccCCCCccc
Q 035595 147 LANLKSYRRVMFDSPDTEE 165 (178)
Q Consensus 147 l~nl~~~~~~~~~~~~~~~ 165 (178)
.+.+|+.|-|-+-+
T Consensus 183 -----~fD~ILvDaPCSG~ 196 (470)
T PRK11933 183 -----TFDAILLDAPCSGE 196 (470)
T ss_pred -----hcCeEEEcCCCCCC
Confidence 35677777776543
No 196
>PLN02589 caffeoyl-CoA O-methyltransferase
Probab=85.00 E-value=0.27 Score=42.44 Aligned_cols=53 Identities=17% Similarity=0.116 Sum_probs=37.7
Q ss_pred CCCceeEeeccCCchhHHHhHHhh--hhheeeeecccc--------cccCCC-cceEEEEcccc
Q 035595 79 HEAALDAKGNFGNGSLIADFSVVI--KMKILASLVDGE--------YYNNGH-ENFSFLVDGEY 131 (178)
Q Consensus 79 ~~~~~vLEvGCG~Gnta~pll~~~--~~~i~AtD~s~k--------~~~~g~-~N~~F~~~~~~ 131 (178)
..+.+|||||+++|-+++-++... ..+++.+|...+ ...+|+ .++++..+...
T Consensus 78 ~~ak~iLEiGT~~GySal~la~al~~~g~v~tiE~~~~~~~~Ar~~~~~ag~~~~I~~~~G~a~ 141 (247)
T PLN02589 78 INAKNTMEIGVYTGYSLLATALALPEDGKILAMDINRENYELGLPVIQKAGVAHKIDFREGPAL 141 (247)
T ss_pred hCCCEEEEEeChhhHHHHHHHhhCCCCCEEEEEeCCHHHHHHHHHHHHHCCCCCceEEEeccHH
Confidence 367899999999999999888754 347888886622 233454 34777776653
No 197
>PF04816 DUF633: Family of unknown function (DUF633) ; InterPro: IPR006901 This is a family of uncharacterised bacterial proteins.; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity; PDB: 3LEC_A 3KU1_G 3KR9_A 3GNL_B.
Probab=84.68 E-value=1.3 Score=37.26 Aligned_cols=64 Identities=16% Similarity=0.087 Sum_probs=41.3
Q ss_pred eEeeccCCchhHHHhHHhhh-hheeeeecc--------cccccCCCcc-eEEEEcccccCCCCCCCCC-cceEeeeeh
Q 035595 84 DAKGNFGNGSLIADFSVVIK-MKILASLVD--------GEYYNNGHEN-FSFLVDGEYYSNCPAVSGS-QNYVILANL 150 (178)
Q Consensus 84 vLEvGCG~Gnta~pll~~~~-~~i~AtD~s--------~k~~~~g~~N-~~F~~~~~~~s~~p~~~~s-~~~vil~nl 150 (178)
|.+|||-=|-..+-|+.... .+++|+|++ +.....|..+ |+++.++-...++ ++. +|+|||+++
T Consensus 1 vaDIGtDHgyLpi~L~~~~~~~~~ia~DI~~gpL~~A~~~i~~~~l~~~i~~rlgdGL~~l~---~~e~~d~ivIAGM 75 (205)
T PF04816_consen 1 VADIGTDHGYLPIYLLKNGKAPKAIAVDINPGPLEKAKENIAKYGLEDRIEVRLGDGLEVLK---PGEDVDTIVIAGM 75 (205)
T ss_dssp EEEET-STTHHHHHHHHTTSEEEEEEEESSHHHHHHHHHHHHHTT-TTTEEEEE-SGGGG-----GGG---EEEEEEE
T ss_pred CceeccchhHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCCcccEEEEECCcccccC---CCCCCCEEEEecC
Confidence 68999999999999998752 478999977 3334456444 7777755432222 455 899999875
No 198
>PF12147 Methyltransf_20: Putative methyltransferase; InterPro: IPR022744 This C-terminal region is found in bacteria and eukaryotes and is approximately 110 amino acids in length. It is found in association with PF00561 from PFAM. Many members are annotated as being lysophospholipases, and others as alpha-beta hydrolase fold-containing proteins. This domain belongs to the S-adenosyl-L-methionine-dependent methyltransferases superfamily.
Probab=84.48 E-value=2 Score=39.20 Aligned_cols=72 Identities=15% Similarity=0.115 Sum_probs=51.6
Q ss_pred CCCceeEeeccCCchhHHHhHHhhh---hheeeeecc--------cccccCCCcce-EEEEcccc-cCCCCCCCCCcceE
Q 035595 79 HEAALDAKGNFGNGSLIADFSVVIK---MKILASLVD--------GEYYNNGHENF-SFLVDGEY-YSNCPAVSGSQNYV 145 (178)
Q Consensus 79 ~~~~~vLEvGCG~Gnta~pll~~~~---~~i~AtD~s--------~k~~~~g~~N~-~F~~~~~~-~s~~p~~~~s~~~v 145 (178)
..+.+||+|-||.|.-+|..+.... ..++=.|.+ +-....|.+++ +|.+.++- ...=-+|.+..+++
T Consensus 134 g~pvrIlDIAaG~GRYvlDal~~~~~~~~~i~LrDys~~Nv~~g~~li~~~gL~~i~~f~~~dAfd~~~l~~l~p~P~l~ 213 (311)
T PF12147_consen 134 GRPVRILDIAAGHGRYVLDALEKHPERPDSILLRDYSPINVEKGRALIAERGLEDIARFEQGDAFDRDSLAALDPAPTLA 213 (311)
T ss_pred CCceEEEEeccCCcHHHHHHHHhCCCCCceEEEEeCCHHHHHHHHHHHHHcCCccceEEEecCCCCHhHhhccCCCCCEE
Confidence 4678999999999999999998653 244445544 44567789997 99998772 12224556667777
Q ss_pred eeeeh
Q 035595 146 ILANL 150 (178)
Q Consensus 146 il~nl 150 (178)
|+..|
T Consensus 214 iVsGL 218 (311)
T PF12147_consen 214 IVSGL 218 (311)
T ss_pred EEecc
Confidence 77766
No 199
>PF05219 DREV: DREV methyltransferase; InterPro: IPR007884 This family contains DREV protein homologues from several eukaryotes. The function of this protein is unknown []. However, these proteins appear to be related to other methyltransferases.
Probab=83.22 E-value=1.1 Score=40.03 Aligned_cols=63 Identities=10% Similarity=0.140 Sum_probs=44.4
Q ss_pred CCceeEeeccCCchhHHHhHHhhhhheeeeecc----cccccCCCcceEEEEcccccCCCCCCCCCcceEeeeeh
Q 035595 80 EAALDAKGNFGNGSLIADFSVVIKMKILASLVD----GEYYNNGHENFSFLVDGEYYSNCPAVSGSQNYVILANL 150 (178)
Q Consensus 80 ~~~~vLEvGCG~Gnta~pll~~~~~~i~AtD~s----~k~~~~g~~N~~F~~~~~~~s~~p~~~~s~~~vil~nl 150 (178)
...++|+||.|-|+....+.+..+ +++||.+| .++...|...++- .+- . ......|+++.-||
T Consensus 94 ~~~~lLDlGAGdG~VT~~l~~~f~-~v~aTE~S~~Mr~rL~~kg~~vl~~---~~w-~---~~~~~fDvIscLNv 160 (265)
T PF05219_consen 94 KDKSLLDLGAGDGEVTERLAPLFK-EVYATEASPPMRWRLSKKGFTVLDI---DDW-Q---QTDFKFDVISCLNV 160 (265)
T ss_pred cCCceEEecCCCcHHHHHHHhhcc-eEEeecCCHHHHHHHHhCCCeEEeh---hhh-h---ccCCceEEEeehhh
Confidence 356899999999999999999987 89999988 4555656554311 111 0 11345788887775
No 200
>KOG1500 consensus Protein arginine N-methyltransferase CARM1 [Posttranslational modification, protein turnover, chaperones; Transcription]
Probab=82.55 E-value=1.7 Score=41.31 Aligned_cols=34 Identities=15% Similarity=-0.012 Sum_probs=27.7
Q ss_pred CCceeEeeccCCchhHHHhHHhhhhheeeeeccc
Q 035595 80 EAALDAKGNFGNGSLIADFSVVIKMKILASLVDG 113 (178)
Q Consensus 80 ~~~~vLEvGCG~Gnta~pll~~~~~~i~AtD~s~ 113 (178)
....||+||||.|-.-+--+..-..+++|+.+++
T Consensus 177 ~~kiVlDVGaGSGILS~FAaqAGA~~vYAvEAS~ 210 (517)
T KOG1500|consen 177 QDKIVLDVGAGSGILSFFAAQAGAKKVYAVEASE 210 (517)
T ss_pred CCcEEEEecCCccHHHHHHHHhCcceEEEEehhH
Confidence 3578999999999888777666555999999883
No 201
>KOG3115 consensus Methyltransferase-like protein [General function prediction only]
Probab=82.52 E-value=1.7 Score=38.55 Aligned_cols=51 Identities=18% Similarity=0.109 Sum_probs=34.9
Q ss_pred CceeEeeccCCchhHHHhHHhh-hhheeeeecc---------------cccccCCCcceEEEEcccc
Q 035595 81 AALDAKGNFGNGSLIADFSVVI-KMKILASLVD---------------GEYYNNGHENFSFLVDGEY 131 (178)
Q Consensus 81 ~~~vLEvGCG~Gnta~pll~~~-~~~i~AtD~s---------------~k~~~~g~~N~~F~~~~~~ 131 (178)
...+.+||||-|...+.|++.. ...|++..++ ...+.....|+...+.++-
T Consensus 61 kvefaDIGCGyGGLlv~Lsp~fPdtLiLGmEIR~KVsdYVk~RI~ALR~~~a~~~~~ni~vlr~nam 127 (249)
T KOG3115|consen 61 KVEFADIGCGYGGLLMKLAPKFPDTLILGMEIRDKVSDYVKERIQALRRTSAEGQYPNISVLRTNAM 127 (249)
T ss_pred cceEEeeccCccchhhhccccCccceeeeehhhHHHHHHHHHHHHHHhccccccccccceeeeccch
Confidence 3567899999999999998864 3456664433 2334445777888776663
No 202
>TIGR00308 TRM1 tRNA(guanine-26,N2-N2) methyltransferase. This enzyme is responsible for two methylations of a characteristic guanine of most tRNA molecules. The activity has been demonstrated for eukaryotic and archaeal proteins, which are active when expressed in E. coli, a species that lacks this enzyme. At least one Eubacterium, Aquifex aeolicus, has an ortholog, as do all completed archaeal genomes.
Probab=80.77 E-value=1.1 Score=41.04 Aligned_cols=49 Identities=14% Similarity=0.067 Sum_probs=35.4
Q ss_pred ceeEeeccCCchhHHHhHHhh--hhheeeeecccc--------cccCCCcceEEEEccc
Q 035595 82 ALDAKGNFGNGSLIADFSVVI--KMKILASLVDGE--------YYNNGHENFSFLVDGE 130 (178)
Q Consensus 82 ~~vLEvGCG~Gnta~pll~~~--~~~i~AtD~s~k--------~~~~g~~N~~F~~~~~ 130 (178)
.+|||+-||+|..+++.+... ...+++.|++.. +..++..++.+...+.
T Consensus 46 ~~vLD~faGsG~rgir~a~e~~ga~~Vv~nD~n~~Av~~i~~N~~~N~~~~~~v~~~Da 104 (374)
T TIGR00308 46 INIADALSASGIRAIRYAHEIEGVREVFANDINPKAVESIKNNVEYNSVENIEVPNEDA 104 (374)
T ss_pred CEEEECCCchhHHHHHHHhhCCCCCEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEchhH
Confidence 589999999999999999863 248999997732 2334555566655444
No 203
>COG3897 Predicted methyltransferase [General function prediction only]
Probab=80.65 E-value=3.2 Score=36.29 Aligned_cols=76 Identities=12% Similarity=0.082 Sum_probs=48.5
Q ss_pred CCcccccccccccCCCceeEeeccCCchhHHHhHHhhhhheeeeecc--------cccccCCCcceEEEEcccccCCCCC
Q 035595 66 GKFFKFTAELSNCHEAALDAKGNFGNGSLIADFSVVIKMKILASLVD--------GEYYNNGHENFSFLVDGEYYSNCPA 137 (178)
Q Consensus 66 ~~FFKdRPEL~~~~~~~~vLEvGCG~Gnta~pll~~~~~~i~AtD~s--------~k~~~~g~~N~~F~~~~~~~s~~p~ 137 (178)
.|.--+|||+.. .++|||+|.|.|=-++--+......++++|+. -.+..+| -++.|+..+..+ .
T Consensus 68 AR~i~~~PetVr---gkrVLd~gagsgLvaIAaa~aGA~~v~a~d~~P~~~~ai~lNa~ang-v~i~~~~~d~~g-~--- 139 (218)
T COG3897 68 ARYIDDHPETVR---GKRVLDLGAGSGLVAIAAARAGAAEVVAADIDPWLEQAIRLNAAANG-VSILFTHADLIG-S--- 139 (218)
T ss_pred HHHHhcCccccc---cceeeecccccChHHHHHHHhhhHHHHhcCCChHHHHHhhcchhhcc-ceeEEeeccccC-C---
Confidence 356667788764 67999999999977766555544467787755 1122223 347777766653 2
Q ss_pred CCCCcceEeeeeh
Q 035595 138 VSGSQNYVILANL 150 (178)
Q Consensus 138 ~~~s~~~vil~nl 150 (178)
++..|++++-.|
T Consensus 140 -~~~~Dl~LagDl 151 (218)
T COG3897 140 -PPAFDLLLAGDL 151 (218)
T ss_pred -CcceeEEEeece
Confidence 455787776543
No 204
>COG4122 Predicted O-methyltransferase [General function prediction only]
Probab=80.45 E-value=0.64 Score=39.95 Aligned_cols=71 Identities=10% Similarity=0.056 Sum_probs=46.8
Q ss_pred cCCCceeEeeccCCchhHHHhHHhh--hhheeeeecc--------cccccCCCcc-eEEEEc-ccccCCCCCCCCCcceE
Q 035595 78 CHEAALDAKGNFGNGSLIADFSVVI--KMKILASLVD--------GEYYNNGHEN-FSFLVD-GEYYSNCPAVSGSQNYV 145 (178)
Q Consensus 78 ~~~~~~vLEvGCG~Gnta~pll~~~--~~~i~AtD~s--------~k~~~~g~~N-~~F~~~-~~~~s~~p~~~~s~~~v 145 (178)
..++.+|||||-+.|-.++-++... .-+++.+|++ +.....|+++ +.+... ....-+...+.++-|+|
T Consensus 57 ~~~~k~iLEiGT~~GySal~mA~~l~~~g~l~tiE~~~e~~~~A~~n~~~ag~~~~i~~~~~gdal~~l~~~~~~~fDli 136 (219)
T COG4122 57 LSGPKRILEIGTAIGYSALWMALALPDDGRLTTIERDEERAEIARENLAEAGVDDRIELLLGGDALDVLSRLLDGSFDLV 136 (219)
T ss_pred hcCCceEEEeecccCHHHHHHHhhCCCCCeEEEEeCCHHHHHHHHHHHHHcCCcceEEEEecCcHHHHHHhccCCCccEE
Confidence 3578999999999999999999864 2478999977 3335567777 555553 22111111346677766
Q ss_pred eee
Q 035595 146 ILA 148 (178)
Q Consensus 146 il~ 148 (178)
.|-
T Consensus 137 FID 139 (219)
T COG4122 137 FID 139 (219)
T ss_pred EEe
Confidence 654
No 205
>PF07091 FmrO: Ribosomal RNA methyltransferase (FmrO); PDB: 3LCU_A 3LCV_B 3FRH_A 3FRI_A 3B89_A 3FZG_A.
Probab=79.13 E-value=1.8 Score=38.30 Aligned_cols=37 Identities=11% Similarity=-0.025 Sum_probs=27.2
Q ss_pred cCCCceeEeeccCCchhHHHhHHhh-hhheeeeecccc
Q 035595 78 CHEAALDAKGNFGNGSLIADFSVVI-KMKILASLVDGE 114 (178)
Q Consensus 78 ~~~~~~vLEvGCG~Gnta~pll~~~-~~~i~AtD~s~k 114 (178)
+.++.+|++||||.==.++|.+... +-.++|.|++.+
T Consensus 103 ~~~p~sVlDigCGlNPlalp~~~~~~~a~Y~a~DID~~ 140 (251)
T PF07091_consen 103 IPPPDSVLDIGCGLNPLALPWMPEAPGATYIAYDIDSQ 140 (251)
T ss_dssp S---SEEEEET-TTCHHHHHTTTSSTT-EEEEEESBHH
T ss_pred CCCCchhhhhhccCCceehhhcccCCCcEEEEEeCCHH
Confidence 3568999999999999999999764 458899998833
No 206
>PF07757 AdoMet_MTase: Predicted AdoMet-dependent methyltransferase; InterPro: IPR011671 tRNA (uracil-O(2)-)-methyltransferase catalyses the formation of O(2)-methyl-uracil at position 44 (m2U44) in tRNA(Ser) [].; GO: 0008168 methyltransferase activity
Probab=78.87 E-value=1.6 Score=34.63 Aligned_cols=33 Identities=12% Similarity=-0.161 Sum_probs=23.6
Q ss_pred CceeEeeccCCchhHHHhHHhhhhheeeeecccc
Q 035595 81 AALDAKGNFGNGSLIADFSVVIKMKILASLVDGE 114 (178)
Q Consensus 81 ~~~vLEvGCG~Gnta~pll~~~~~~i~AtD~s~k 114 (178)
.....++|||+|=.+.=|...- ..-.+.|+++|
T Consensus 59 ~~~FVDlGCGNGLLV~IL~~EG-y~G~GiD~R~R 91 (112)
T PF07757_consen 59 FQGFVDLGCGNGLLVYILNSEG-YPGWGIDARRR 91 (112)
T ss_pred CCceEEccCCchHHHHHHHhCC-CCccccccccc
Confidence 3456899999998887666543 35577887744
No 207
>PLN02823 spermine synthase
Probab=78.63 E-value=1.9 Score=38.85 Aligned_cols=40 Identities=15% Similarity=0.008 Sum_probs=29.7
Q ss_pred ccccccCCCceeEeeccCCchhHHHhHHhh-hhheeeeecc
Q 035595 73 AELSNCHEAALDAKGNFGNGSLIADFSVVI-KMKILASLVD 112 (178)
Q Consensus 73 PEL~~~~~~~~vLEvGCG~Gnta~pll~~~-~~~i~AtD~s 112 (178)
|-|+....+.+||.||+|.|.++.-++... ..+++++|++
T Consensus 96 ~~l~~~~~pk~VLiiGgG~G~~~re~l~~~~~~~v~~VEiD 136 (336)
T PLN02823 96 PALLHHPNPKTVFIMGGGEGSTAREVLRHKTVEKVVMCDID 136 (336)
T ss_pred HHHhhCCCCCEEEEECCCchHHHHHHHhCCCCCeEEEEECC
Confidence 333333456799999999999999998853 2477888866
No 208
>PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional
Probab=77.91 E-value=4.2 Score=39.75 Aligned_cols=20 Identities=20% Similarity=0.272 Sum_probs=16.8
Q ss_pred CCceeEeeccCCchhHHHhH
Q 035595 80 EAALDAKGNFGNGSLIADFS 99 (178)
Q Consensus 80 ~~~~vLEvGCG~Gnta~pll 99 (178)
+...+++-+||+|+.++--+
T Consensus 190 ~~~~l~DP~CGSGTilIEAa 209 (702)
T PRK11783 190 EGTPLLDPMCGSGTLLIEAA 209 (702)
T ss_pred CCCeEEccCCCccHHHHHHH
Confidence 45789999999999987654
No 209
>PF05148 Methyltransf_8: Hypothetical methyltransferase; InterPro: IPR007823 This family consists of uncharacterised eukaryotic proteins which are related to S-adenosyl-L-methionine-dependent methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 2ZFU_B.
Probab=76.68 E-value=4.3 Score=35.48 Aligned_cols=89 Identities=16% Similarity=0.109 Sum_probs=39.5
Q ss_pred ccccchHHHHHHH--hhcCCCCccccc-----ccccccCCCceeEeeccCCchhHHHhHHhhhhheeeeecccccccCCC
Q 035595 48 EAEKDSDAWKRFH--SRHSSGKFFKFT-----AELSNCHEAALDAKGNFGNGSLIADFSVVIKMKILASLVDGEYYNNGH 120 (178)
Q Consensus 48 ~~~~~~~~Wd~Fy--~rh~~~~FFKdR-----PEL~~~~~~~~vLEvGCG~Gnta~pll~~~~~~i~AtD~s~k~~~~g~ 120 (178)
-...++..|+.+| .|++..+...+= -.|........|.++|||-+-.|.-+- .+..++--|.-+.
T Consensus 33 lf~~dP~~F~~YH~Gfr~Qv~~WP~nPvd~iI~~l~~~~~~~viaD~GCGdA~la~~~~--~~~~V~SfDLva~------ 104 (219)
T PF05148_consen 33 LFQEDPELFDIYHEGFRQQVKKWPVNPVDVIIEWLKKRPKSLVIADFGCGDAKLAKAVP--NKHKVHSFDLVAP------ 104 (219)
T ss_dssp HHHH-HHHHHHHHHHHHHHHCTSSS-HHHHHHHHHCTS-TTS-EEEES-TT-HHHHH----S---EEEEESS-S------
T ss_pred HHHhCHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHhcCCCEEEEECCCchHHHHHhcc--cCceEEEeeccCC------
Confidence 4456777888887 233322222111 122333456799999999998884432 2234666664421
Q ss_pred cceEEEEcccccCCCCCCCCCcceEee
Q 035595 121 ENFSFLVDGEYYSNCPAVSGSQNYVIL 147 (178)
Q Consensus 121 ~N~~F~~~~~~~s~~p~~~~s~~~vil 147 (178)
|=..++++. +.-|-=.+|+|++|.
T Consensus 105 -n~~Vtacdi--a~vPL~~~svDv~Vf 128 (219)
T PF05148_consen 105 -NPRVTACDI--ANVPLEDESVDVAVF 128 (219)
T ss_dssp -STTEEES-T--TS-S--TT-EEEEEE
T ss_pred -CCCEEEecC--ccCcCCCCceeEEEE
Confidence 112333332 222322688999985
No 210
>PF07101 DUF1363: Protein of unknown function (DUF1363); InterPro: IPR009795 This family consists of several Trypanosoma brucei putative variant specific antigen proteins of around 80 residues in length.
Probab=75.23 E-value=1.1 Score=35.71 Aligned_cols=18 Identities=11% Similarity=0.003 Sum_probs=14.4
Q ss_pred EeeccCCchhHHHhHHhh
Q 035595 85 AKGNFGNGSLIADFSVVI 102 (178)
Q Consensus 85 LEvGCG~Gnta~pll~~~ 102 (178)
++||||.|||.-.-....
T Consensus 7 IDIGcG~GNTmda~fRsc 24 (124)
T PF07101_consen 7 IDIGCGAGNTMDAAFRSC 24 (124)
T ss_pred cccccCCCcchhhhhhcc
Confidence 689999999976666554
No 211
>PLN02668 indole-3-acetate carboxyl methyltransferase
Probab=73.79 E-value=2.5 Score=39.22 Aligned_cols=21 Identities=14% Similarity=-0.029 Sum_probs=16.9
Q ss_pred CceeEeeccCCchhHHHhHHh
Q 035595 81 AALDAKGNFGNGSLIADFSVV 101 (178)
Q Consensus 81 ~~~vLEvGCG~Gnta~pll~~ 101 (178)
...|+|+|||+|-+++.++..
T Consensus 64 ~~~iaDlGcs~G~ntl~~vs~ 84 (386)
T PLN02668 64 PFTAVDLGCSSGSNTIHIIDV 84 (386)
T ss_pred ceeEEEecCCCCccHHHHHHH
Confidence 678999999999777766543
No 212
>PF02636 Methyltransf_28: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR003788 This entry describes proteins of unknown function.; PDB: 4F3N_A 1ZKD_B.
Probab=72.43 E-value=3.1 Score=34.87 Aligned_cols=22 Identities=18% Similarity=0.137 Sum_probs=18.3
Q ss_pred CceeEeeccCCchhHHHhHHhh
Q 035595 81 AALDAKGNFGNGSLIADFSVVI 102 (178)
Q Consensus 81 ~~~vLEvGCG~Gnta~pll~~~ 102 (178)
+.+|+|+|.|+|..+..+|...
T Consensus 19 ~~~ivE~GaG~G~La~diL~~l 40 (252)
T PF02636_consen 19 PLRIVEIGAGRGTLARDILRYL 40 (252)
T ss_dssp -EEEEEES-TTSHHHHHHHHHH
T ss_pred CcEEEEECCCchHHHHHHHHHH
Confidence 4789999999999999999765
No 213
>PF05206 TRM13: Methyltransferase TRM13; InterPro: IPR007871 This entry consists of eukaryotic and bacterial proteins that specifically methylates guanosine-4 in various tRNAs with a Gly(CCG), His or Pro signatures []. The alignment contains some conserved cysteines and histidines that might form a zinc binding site.; GO: 0008168 methyltransferase activity, 0008033 tRNA processing
Probab=70.64 E-value=14 Score=32.43 Aligned_cols=33 Identities=9% Similarity=-0.030 Sum_probs=25.8
Q ss_pred CCceeEeeccCCchhHHHhHHhh------hhheeeeecc
Q 035595 80 EAALDAKGNFGNGSLIADFSVVI------KMKILASLVD 112 (178)
Q Consensus 80 ~~~~vLEvGCG~Gnta~pll~~~------~~~i~AtD~s 112 (178)
+...++|+|||.|-+..-+.... ...++.+|+.
T Consensus 18 ~~~~~vEfGaGrg~LS~~v~~~~~~~~~~~~~~~lIDR~ 56 (259)
T PF05206_consen 18 PDSCFVEFGAGRGELSRWVAQALQEDKPSNSRFVLIDRA 56 (259)
T ss_pred CCCEEEEECCCchHHHHHHHHHhhhcccCCccEEEEecC
Confidence 45689999999999888888755 3467788865
No 214
>PF01555 N6_N4_Mtase: DNA methylase; InterPro: IPR002941 This domain is found in DNA methylases. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. This family contains both N-4 cytosine-specific DNA methylases and N-6 Adenine-specific DNA methylases. N-4 cytosine-specific DNA methylases (2.1.1.113 from EC) [] are enzymes that specifically methylate the amino group at the C-4 position of cytosines in DNA. Such enzymes are found as components of type II restriction-modification systems in prokaryotes. Such enzymes recognise a specific sequence in DNA and methylate a cytosine in that sequence. By this action they protect DNA from cleavage by type II restriction enzymes that recognise the same sequence. N-6 adenine-specific DNA methylases (2.1.1.72 from EC) (A-Mtase) are enzymes that specifically methylate the amino group at the C-6 position of adenines in DNA. Such enzymes are found in the three existing types of bacterial restriction-modification systems (in type I system the A-Mtase is the product of the hsdM gene, and in type III it is the product of the mod gene). All of these enzymes recognise a specific sequence in DNA and methylate an adenine in that sequence.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2ZIF_A 2ZIE_A 2ZIG_A 1NW6_A 1NW8_A 1NW7_A 1NW5_A 1EG2_A 1BOO_A 1G60_B ....
Probab=64.31 E-value=5.7 Score=30.82 Aligned_cols=37 Identities=14% Similarity=0.191 Sum_probs=28.1
Q ss_pred CCCceeEeeccCCchhHHHhHHhhhhheeeeecccccc
Q 035595 79 HEAALDAKGNFGNGSLIADFSVVIKMKILASLVDGEYY 116 (178)
Q Consensus 79 ~~~~~vLEvGCG~Gnta~pll~~~~~~i~AtD~s~k~~ 116 (178)
.+.+.||+.=||+|+|+.--....+ +.++++++.+++
T Consensus 190 ~~gdiVlDpF~GSGTT~~aa~~l~R-~~ig~E~~~~y~ 226 (231)
T PF01555_consen 190 NPGDIVLDPFAGSGTTAVAAEELGR-RYIGIEIDEEYC 226 (231)
T ss_dssp -TT-EEEETT-TTTHHHHHHHHTT--EEEEEESSHHHH
T ss_pred ccceeeehhhhccChHHHHHHHcCC-eEEEEeCCHHHH
Confidence 4678999999999999988777776 788999886654
No 215
>PF02527 GidB: rRNA small subunit methyltransferase G; InterPro: IPR003682 This entry represents a rRNA small subunit methyltransferase G. Previously identified as a glucose-inhibited division protein B that appears to be present and in a single copy in all complete eubacterial genomes so far sequenced. Specifically methylates the N7 position of a guanosine in 16S rRNA [, , ].; GO: 0008649 rRNA methyltransferase activity, 0006364 rRNA processing, 0005737 cytoplasm; PDB: 1XDZ_A 3G88_A 3G8A_B 3G89_B 3G8B_B 1JSX_A.
Probab=63.30 E-value=13 Score=30.82 Aligned_cols=69 Identities=12% Similarity=0.029 Sum_probs=45.6
Q ss_pred eeEeeccCCchhHHHhHHhh-hhheeeeecccc--------cccCCCcceEEEEcccccCCCCCCCCCcceEeeeehhhh
Q 035595 83 LDAKGNFGNGSLIADFSVVI-KMKILASLVDGE--------YYNNGHENFSFLVDGEYYSNCPAVSGSQNYVILANLKSY 153 (178)
Q Consensus 83 ~vLEvGCG~Gnta~pll~~~-~~~i~AtD~s~k--------~~~~g~~N~~F~~~~~~~s~~p~~~~s~~~vil~nl~~~ 153 (178)
++++||.|.|==++||+-.. ..+++-+|..+| ...=|..|+.+..+-... +...++.|+|+---+++.
T Consensus 51 ~~lDiGSGaGfPGipLaI~~p~~~~~LvEs~~KK~~FL~~~~~~L~L~nv~v~~~R~E~---~~~~~~fd~v~aRAv~~l 127 (184)
T PF02527_consen 51 KVLDIGSGAGFPGIPLAIARPDLQVTLVESVGKKVAFLKEVVRELGLSNVEVINGRAEE---PEYRESFDVVTARAVAPL 127 (184)
T ss_dssp EEEEETSTTTTTHHHHHHH-TTSEEEEEESSHHHHHHHHHHHHHHT-SSEEEEES-HHH---TTTTT-EEEEEEESSSSH
T ss_pred eEEecCCCCCChhHHHHHhCCCCcEEEEeCCchHHHHHHHHHHHhCCCCEEEEEeeecc---cccCCCccEEEeehhcCH
Confidence 79999999999999999764 345666674422 133477788888766552 445778888886655554
Q ss_pred h
Q 035595 154 R 154 (178)
Q Consensus 154 ~ 154 (178)
.
T Consensus 128 ~ 128 (184)
T PF02527_consen 128 D 128 (184)
T ss_dssp H
T ss_pred H
Confidence 4
No 216
>KOG2920 consensus Predicted methyltransferase [General function prediction only]
Probab=62.81 E-value=6 Score=35.67 Aligned_cols=33 Identities=6% Similarity=-0.258 Sum_probs=20.3
Q ss_pred CceeEeeccCCchhHHHhHHhhhhheeeeeccc
Q 035595 81 AALDAKGNFGNGSLIADFSVVIKMKILASLVDG 113 (178)
Q Consensus 81 ~~~vLEvGCG~Gnta~pll~~~~~~i~AtD~s~ 113 (178)
.++|||+|||.|=-.+-....-...+...|.+.
T Consensus 117 ~k~vLELgCg~~Lp~i~~~~~~~~~~~fqD~na 149 (282)
T KOG2920|consen 117 GKRVLELGCGAALPGIFAFVKGAVSVHFQDFNA 149 (282)
T ss_pred CceeEecCCcccccchhhhhhccceeeeEecch
Confidence 478999999987544444333223455566553
No 217
>PF03602 Cons_hypoth95: Conserved hypothetical protein 95; InterPro: IPR004398 This entry contains Ribosomal RNA small subunit methyltransferase D as well as the putative rRNA methyltransferase YlbH. They methylate the guanosine in position 966 of 16S rRNA in the assembled 30S particle [].; GO: 0008168 methyltransferase activity, 0031167 rRNA methylation; PDB: 3P9N_A 2ESR_B 2IFT_A 1WS6_A 2FPO_B 2FHP_A.
Probab=61.05 E-value=6.7 Score=32.11 Aligned_cols=33 Identities=15% Similarity=-0.070 Sum_probs=24.1
Q ss_pred CCceeEeeccCCchhHHHhHHhhhhheeeeecc
Q 035595 80 EAALDAKGNFGNGSLIADFSVVIKMKILASLVD 112 (178)
Q Consensus 80 ~~~~vLEvGCG~Gnta~pll~~~~~~i~AtD~s 112 (178)
+..+||++=||+|+.++--+..-..+++.+|.+
T Consensus 42 ~g~~vLDLFaGSGalGlEALSRGA~~v~fVE~~ 74 (183)
T PF03602_consen 42 EGARVLDLFAGSGALGLEALSRGAKSVVFVEKN 74 (183)
T ss_dssp TT-EEEETT-TTSHHHHHHHHTT-SEEEEEES-
T ss_pred CCCeEEEcCCccCccHHHHHhcCCCeEEEEECC
Confidence 568999999999999998776543478888866
No 218
>COG1255 Uncharacterized protein conserved in archaea [Function unknown]
Probab=60.64 E-value=15 Score=29.97 Aligned_cols=48 Identities=17% Similarity=0.084 Sum_probs=36.1
Q ss_pred CCceeEeeccCCchhHHHhHHhhhhheeeeecccccccCCCcceEEEEccc
Q 035595 80 EAALDAKGNFGNGSLIADFSVVIKMKILASLVDGEYYNNGHENFSFLVDGE 130 (178)
Q Consensus 80 ~~~~vLEvGCG~Gnta~pll~~~~~~i~AtD~s~k~~~~g~~N~~F~~~~~ 130 (178)
...+|.|||-|-=--+...|..-...++|||+.++.+. +.+.|.+++.
T Consensus 13 ~~gkVvEVGiG~~~~VA~~L~e~g~dv~atDI~~~~a~---~g~~~v~DDi 60 (129)
T COG1255 13 ARGKVVEVGIGFFLDVAKRLAERGFDVLATDINEKTAP---EGLRFVVDDI 60 (129)
T ss_pred cCCcEEEEccchHHHHHHHHHHcCCcEEEEecccccCc---ccceEEEccC
Confidence 34589999999776666666655567899999988433 6778888765
No 219
>KOG1975 consensus mRNA cap methyltransferase [RNA processing and modification]
Probab=58.51 E-value=6.5 Score=36.90 Aligned_cols=33 Identities=6% Similarity=-0.059 Sum_probs=26.6
Q ss_pred CCceeEeeccCCchhHHHhHHhhhhheeeeecc
Q 035595 80 EAALDAKGNFGNGSLIADFSVVIKMKILASLVD 112 (178)
Q Consensus 80 ~~~~vLEvGCG~Gnta~pll~~~~~~i~AtD~s 112 (178)
+.+.+|++|||-|.-++..-..--..++++|+.
T Consensus 117 ~~~~~~~LgCGKGGDLlKw~kAgI~~~igiDIA 149 (389)
T KOG1975|consen 117 RGDDVLDLGCGKGGDLLKWDKAGIGEYIGIDIA 149 (389)
T ss_pred cccccceeccCCcccHhHhhhhcccceEeeehh
Confidence 457799999999998888776543588999965
No 220
>PF03686 UPF0146: Uncharacterised protein family (UPF0146); InterPro: IPR005353 The function of this family of proteins is unknown.; PDB: 2K4M_A.
Probab=58.18 E-value=13 Score=30.02 Aligned_cols=48 Identities=15% Similarity=0.098 Sum_probs=28.1
Q ss_pred CCceeEeeccCCchhHHHhHHhhhhheeeeecccccccCCCcceEEEEccc
Q 035595 80 EAALDAKGNFGNGSLIADFSVVIKMKILASLVDGEYYNNGHENFSFLVDGE 130 (178)
Q Consensus 80 ~~~~vLEvGCG~Gnta~pll~~~~~~i~AtD~s~k~~~~g~~N~~F~~~~~ 130 (178)
...+|.|||-|.=-.+.-.|......++|||+..+.+. ..+.|.+++.
T Consensus 13 ~~~kiVEVGiG~~~~vA~~L~~~G~dV~~tDi~~~~a~---~g~~~v~DDi 60 (127)
T PF03686_consen 13 NYGKIVEVGIGFNPEVAKKLKERGFDVIATDINPRKAP---EGVNFVVDDI 60 (127)
T ss_dssp -SSEEEEET-TT--HHHHHHHHHS-EEEEE-SS-S-------STTEE---S
T ss_pred CCCcEEEECcCCCHHHHHHHHHcCCcEEEEECcccccc---cCcceeeecc
Confidence 34589999999888888888777678999999977322 5677777665
No 221
>KOG2352 consensus Predicted spermine/spermidine synthase [Amino acid transport and metabolism]
Probab=53.16 E-value=21 Score=34.50 Aligned_cols=94 Identities=13% Similarity=-0.028 Sum_probs=49.8
Q ss_pred chHHHHHHHhhcCCCCccccc----cccccc-----CCCc-eeEeeccCCchhHHHhHHhhhhheeeeecc-------cc
Q 035595 52 DSDAWKRFHSRHSSGKFFKFT----AELSNC-----HEAA-LDAKGNFGNGSLIADFSVVIKMKILASLVD-------GE 114 (178)
Q Consensus 52 ~~~~Wd~Fy~rh~~~~FFKdR----PEL~~~-----~~~~-~vLEvGCG~Gnta~pll~~~~~~i~AtD~s-------~k 114 (178)
...+||+||.......| +| .+|... .+.. ++|.+|||+=-...-+-..---.|+-+|.| ..
T Consensus 12 s~~~wd~rf~~rg~~~~--ewY~~~l~l~~~i~~~~~p~~~~~l~lGCGNS~l~e~ly~~G~~dI~~iD~S~V~V~~m~~ 89 (482)
T KOG2352|consen 12 SVVYWDKRFQPRGSDPF--EWYGALLSLSGSIMKYLSPSDFKILQLGCGNSELSEHLYKNGFEDITNIDSSSVVVAAMQV 89 (482)
T ss_pred cchhhhhhccccCCChH--HHHHHHHHHHHHHHHhhchhhceeEeecCCCCHHHHHHHhcCCCCceeccccHHHHHHHHh
Confidence 45699999944421122 22 222111 2344 899999998743333333222356667766 11
Q ss_pred cccCCCcceEEEEcccccCCCCCC-CCCcceEeeeeh
Q 035595 115 YYNNGHENFSFLVDGEYYSNCPAV-SGSQNYVILANL 150 (178)
Q Consensus 115 ~~~~g~~N~~F~~~~~~~s~~p~~-~~s~~~vil~nl 150 (178)
.+.....-..|+..+.+. -.+ .+|-|+||++|-
T Consensus 90 ~~~~~~~~~~~~~~d~~~---l~fedESFdiVIdkGt 123 (482)
T KOG2352|consen 90 RNAKERPEMQMVEMDMDQ---LVFEDESFDIVIDKGT 123 (482)
T ss_pred ccccCCcceEEEEecchh---ccCCCcceeEEEecCc
Confidence 111233336666655531 123 678889998873
No 222
>PRK00536 speE spermidine synthase; Provisional
Probab=49.57 E-value=14 Score=32.37 Aligned_cols=39 Identities=8% Similarity=-0.273 Sum_probs=32.8
Q ss_pred ccccccCCCceeEeeccCCchhHHHhHHhhhhheeeeecc
Q 035595 73 AELSNCHEAALDAKGNFGNGSLIADFSVVIKMKILASLVD 112 (178)
Q Consensus 73 PEL~~~~~~~~vLEvGCG~Gnta~pll~~~~~~i~AtD~s 112 (178)
|-|+....+.+||=||=|-|.|+.-++.+.. +++-+|++
T Consensus 65 ppl~~h~~pk~VLIiGGGDGg~~REvLkh~~-~v~mVeID 103 (262)
T PRK00536 65 MGGCTKKELKEVLIVDGFDLELAHQLFKYDT-HVDFVQAD 103 (262)
T ss_pred HHHhhCCCCCeEEEEcCCchHHHHHHHCcCC-eeEEEECC
Confidence 6666777889999999999999999999974 77766655
No 223
>KOG3987 consensus Uncharacterized conserved protein DREV/CGI-81 [Function unknown]
Probab=49.50 E-value=6.2 Score=35.40 Aligned_cols=32 Identities=13% Similarity=0.198 Sum_probs=28.7
Q ss_pred CCceeEeeccCCchhHHHhHHhhhhheeeeecc
Q 035595 80 EAALDAKGNFGNGSLIADFSVVIKMKILASLVD 112 (178)
Q Consensus 80 ~~~~vLEvGCG~Gnta~pll~~~~~~i~AtD~s 112 (178)
.+.++|++|.|.|-....+.+... +++||..|
T Consensus 112 ~~~~lLDlGAGdGeit~~m~p~fe-evyATElS 143 (288)
T KOG3987|consen 112 EPVTLLDLGAGDGEITLRMAPTFE-EVYATELS 143 (288)
T ss_pred CCeeEEeccCCCcchhhhhcchHH-HHHHHHhh
Confidence 457999999999999999999986 89998877
No 224
>PF13578 Methyltransf_24: Methyltransferase domain; PDB: 3SSO_A 3SSN_C 3SSM_D.
Probab=43.87 E-value=10 Score=26.96 Aligned_cols=64 Identities=8% Similarity=0.013 Sum_probs=16.8
Q ss_pred EeeccCCchhHHHhHHhhh----hheeeeeccc---cc----ccCCC-cceEEEEcccccCCCCCC-CCCcceEeeee
Q 035595 85 AKGNFGNGSLIADFSVVIK----MKILASLVDG---EY----YNNGH-ENFSFLVDGEYYSNCPAV-SGSQNYVILAN 149 (178)
Q Consensus 85 LEvGCG~Gnta~pll~~~~----~~i~AtD~s~---k~----~~~g~-~N~~F~~~~~~~s~~p~~-~~s~~~vil~n 149 (178)
||+||..|.+++-++...+ .+++++|... .. ...+. .++.|..+.....++ .+ .+..|++.+=.
T Consensus 1 lEiG~~~G~st~~l~~~~~~~~~~~~~~vD~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~l~-~~~~~~~dli~iDg 77 (106)
T PF13578_consen 1 LEIGTYSGYSTLWLASALRDNGRGKLYSVDPFPGDEQAQEIIKKAGLSDRVEFIQGDSPDFLP-SLPDGPIDLIFIDG 77 (106)
T ss_dssp --------------------------EEEESS------------GGG-BTEEEEES-THHHHH-HHHH--EEEEEEES
T ss_pred CccccccccccccccccccccccCCEEEEECCCcccccchhhhhcCCCCeEEEEEcCcHHHHH-HcCCCCEEEEEECC
Confidence 7999999999988887542 2578888554 11 11122 247777655532222 22 25556555543
No 225
>PF03492 Methyltransf_7: SAM dependent carboxyl methyltransferase; InterPro: IPR005299 This family of plant methyltransferases contains enzymes that act on a variety of substrates including salicylic acid, jasmonic acid and 7-Methylxanthine. Caffeine is synthesized through sequential three-step methylation of xanthine derivatives at positions 7-N, 3-N, and 1-N. The protein 7-methylxanthine methyltransferase (designated as CaMXMT) catalyses the second step to produce theobromine [].; GO: 0008168 methyltransferase activity; PDB: 2EFJ_A 1M6E_X 2EG5_C 3B5I_B.
Probab=43.85 E-value=20 Score=32.06 Aligned_cols=24 Identities=13% Similarity=-0.191 Sum_probs=17.2
Q ss_pred CCCceeEeeccCCchhHHHhHHhh
Q 035595 79 HEAALDAKGNFGNGSLIADFSVVI 102 (178)
Q Consensus 79 ~~~~~vLEvGCG~Gnta~pll~~~ 102 (178)
....+|+++||-.|-+.+.++..+
T Consensus 15 ~~~~~iaD~GcS~G~Nsl~~~~~i 38 (334)
T PF03492_consen 15 PKPFRIADLGCSSGPNSLLAVSNI 38 (334)
T ss_dssp TTEEEEEEES--SSHHHHHHHHHH
T ss_pred CCceEEEecCCCCCccHHHHHHHH
Confidence 356799999999998888777643
No 226
>COG4076 Predicted RNA methylase [General function prediction only]
Probab=43.33 E-value=40 Score=29.99 Aligned_cols=79 Identities=23% Similarity=0.238 Sum_probs=52.0
Q ss_pred CceeEeeccCCchhHHHhHHhhhhheeeeecc--------cccccCCCcceEEEEcccc-cCCCCCCCCCcceEeeeehh
Q 035595 81 AALDAKGNFGNGSLIADFSVVIKMKILASLVD--------GEYYNNGHENFSFLVDGEY-YSNCPAVSGSQNYVILANLK 151 (178)
Q Consensus 81 ~~~vLEvGCG~Gnta~pll~~~~~~i~AtD~s--------~k~~~~g~~N~~F~~~~~~-~s~~p~~~~s~~~vil~nl~ 151 (178)
.+.+.++|.|+|-..+--+...+ +++|+... +...-+|..||+....++. +.. ...|+||
T Consensus 33 ~d~~~DLGaGsGiLs~~Aa~~A~-rViAiE~dPk~a~~a~eN~~v~g~~n~evv~gDA~~y~f-----e~ADvvi----- 101 (252)
T COG4076 33 EDTFADLGAGSGILSVVAAHAAE-RVIAIEKDPKRARLAEENLHVPGDVNWEVVVGDARDYDF-----ENADVVI----- 101 (252)
T ss_pred hhceeeccCCcchHHHHHHhhhc-eEEEEecCcHHHHHhhhcCCCCCCcceEEEecccccccc-----cccceeH-----
Confidence 47889999999988876666654 88888755 3333467888988887762 111 3445554
Q ss_pred hhhhhccCCCCccccCchhhhh
Q 035595 152 SYRRVMFDSPDTEEKNKPHLKK 173 (178)
Q Consensus 152 ~~~~~~~~~~~~~~~~~~~~~~ 173 (178)
--|.|.---+|+.-|-+..
T Consensus 102 ---cEmlDTaLi~E~qVpV~n~ 120 (252)
T COG4076 102 ---CEMLDTALIEEKQVPVINA 120 (252)
T ss_pred ---HHHhhHHhhcccccHHHHH
Confidence 2466666667776665543
No 227
>PF01564 Spermine_synth: Spermine/spermidine synthase; InterPro: IPR001045 Synonym(s): Spermidine aminopropyltransferase A group of polyamine biosynthetic enzymes involved in the fifth (last) step in the biosynthesis of spermidine from arginine and methionine which includes; spermidine synthase (2.5.1.16 from EC), spermine synthase (2.5.1.22 from EC) and putrescine N-methyltransferase (2.1.1.53 from EC) []. The Thermotoga maritima spermidine synthase monomer consists of two domains: an N-terminal domain composed of six beta-strands, and a Rossmann-like C- terminal domain []. The larger C-terminal catalytic core domain consists of a seven-stranded beta-sheet flanked by nine alpha helices. This domain resembles a topology observed in a number of nucleotide and dinucleotide-binding enzymes, and in S-adenosyl-L-methionine (AdoMet)- dependent methyltransferase (MTases) [].; GO: 0003824 catalytic activity; PDB: 2E5W_C 2ZSU_E 2O0L_B 2O05_B 2O06_B 2O07_B 3RW9_B 2PWP_A 2HTE_B 3RIE_B ....
Probab=42.51 E-value=21 Score=30.39 Aligned_cols=36 Identities=11% Similarity=-0.087 Sum_probs=27.0
Q ss_pred ccCCCceeEeeccCCchhHHHhHHhh-hhheeeeecc
Q 035595 77 NCHEAALDAKGNFGNGSLIADFSVVI-KMKILASLVD 112 (178)
Q Consensus 77 ~~~~~~~vLEvGCG~Gnta~pll~~~-~~~i~AtD~s 112 (178)
....+.+||-||=|.|+++.-++.+. -.++++++++
T Consensus 73 ~~~~p~~VLiiGgG~G~~~~ell~~~~~~~i~~VEiD 109 (246)
T PF01564_consen 73 LHPNPKRVLIIGGGDGGTARELLKHPPVESITVVEID 109 (246)
T ss_dssp HSSST-EEEEEESTTSHHHHHHTTSTT-SEEEEEES-
T ss_pred cCCCcCceEEEcCCChhhhhhhhhcCCcceEEEEecC
Confidence 33468899999999999999999865 2377777765
No 228
>COG0421 SpeE Spermidine synthase [Amino acid transport and metabolism]
Probab=40.18 E-value=33 Score=30.39 Aligned_cols=34 Identities=12% Similarity=0.037 Sum_probs=26.5
Q ss_pred CCCceeEeeccCCchhHHHhHHhh-hhheeeeecc
Q 035595 79 HEAALDAKGNFGNGSLIADFSVVI-KMKILASLVD 112 (178)
Q Consensus 79 ~~~~~vLEvGCG~Gnta~pll~~~-~~~i~AtD~s 112 (178)
+.+.+||-||=|.|.|+--++.+. --+++.+++.
T Consensus 75 ~~pk~VLiiGgGdG~tlRevlkh~~ve~i~~VEID 109 (282)
T COG0421 75 PNPKRVLIIGGGDGGTLREVLKHLPVERITMVEID 109 (282)
T ss_pred CCCCeEEEECCCccHHHHHHHhcCCcceEEEEEcC
Confidence 334799999999999999999875 1266666655
No 229
>PHA01634 hypothetical protein
Probab=37.83 E-value=25 Score=29.37 Aligned_cols=36 Identities=8% Similarity=-0.176 Sum_probs=28.4
Q ss_pred CCceeEeeccCCchhHHHhHHhhhhheeeeeccccc
Q 035595 80 EAALDAKGNFGNGSLIADFSVVIKMKILASLVDGEY 115 (178)
Q Consensus 80 ~~~~vLEvGCG~Gnta~pll~~~~~~i~AtD~s~k~ 115 (178)
...+|++||.+.|++++=++-.-..+++|...+.+.
T Consensus 28 k~KtV~dIGA~iGdSaiYF~l~GAK~Vva~E~~~kl 63 (156)
T PHA01634 28 YQRTIQIVGADCGSSALYFLLRGASFVVQYEKEEKL 63 (156)
T ss_pred cCCEEEEecCCccchhhHHhhcCccEEEEeccCHHH
Confidence 467899999999999998887654588888766433
No 230
>COG1189 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=36.56 E-value=75 Score=28.32 Aligned_cols=33 Identities=9% Similarity=-0.064 Sum_probs=28.6
Q ss_pred CCceeEeeccCCchhHHHhHHhhhhheeeeecc
Q 035595 80 EAALDAKGNFGNGSLIADFSVVIKMKILASLVD 112 (178)
Q Consensus 80 ~~~~vLEvGCG~Gnta~pll~~~~~~i~AtD~s 112 (178)
...++|++|.-||...-=+|+.-..+++|+|+.
T Consensus 79 k~kv~LDiGsSTGGFTd~lLq~gAk~VyavDVG 111 (245)
T COG1189 79 KGKVVLDIGSSTGGFTDVLLQRGAKHVYAVDVG 111 (245)
T ss_pred CCCEEEEecCCCccHHHHHHHcCCcEEEEEEcc
Confidence 457899999999999999999744599999976
No 231
>PRK11524 putative methyltransferase; Provisional
Probab=36.14 E-value=30 Score=29.77 Aligned_cols=41 Identities=15% Similarity=0.070 Sum_probs=32.4
Q ss_pred CCCceeEeeccCCchhHHHhHHhhhhheeeeecccccccCCC
Q 035595 79 HEAALDAKGNFGNGSLIADFSVVIKMKILASLVDGEYYNNGH 120 (178)
Q Consensus 79 ~~~~~vLEvGCG~Gnta~pll~~~~~~i~AtD~s~k~~~~g~ 120 (178)
.+.+.||+-=||+|+|++--....+ ++++++++.++++-..
T Consensus 207 ~~GD~VLDPF~GSGTT~~AA~~lgR-~~IG~Ei~~~Y~~~a~ 247 (284)
T PRK11524 207 NPGDIVLDPFAGSFTTGAVAKASGR-KFIGIEINSEYIKMGL 247 (284)
T ss_pred CCCCEEEECCCCCcHHHHHHHHcCC-CEEEEeCCHHHHHHHH
Confidence 4789999999999999987766665 8899998865554333
No 232
>KOG3045 consensus Predicted RNA methylase involved in rRNA processing [RNA processing and modification]
Probab=35.42 E-value=45 Score=30.77 Aligned_cols=18 Identities=11% Similarity=0.104 Sum_probs=15.0
Q ss_pred CCCceeEeeccCCchhHH
Q 035595 79 HEAALDAKGNFGNGSLIA 96 (178)
Q Consensus 79 ~~~~~vLEvGCG~Gnta~ 96 (178)
.....|.++|||-+-.|.
T Consensus 179 ~~~~vIaD~GCGEakiA~ 196 (325)
T KOG3045|consen 179 PKNIVIADFGCGEAKIAS 196 (325)
T ss_pred cCceEEEecccchhhhhh
Confidence 456899999999998775
No 233
>COG0031 CysK Cysteine synthase [Amino acid transport and metabolism]
Probab=34.87 E-value=33 Score=31.06 Aligned_cols=53 Identities=13% Similarity=0.118 Sum_probs=36.6
Q ss_pred chHHHHHHHhhcCCCCcccccccccccC-CCceeEeeccCCchhHHHhHHhhh-----hheeeeecc
Q 035595 52 DSDAWKRFHSRHSSGKFFKFTAELSNCH-EAALDAKGNFGNGSLIADFSVVIK-----MKILASLVD 112 (178)
Q Consensus 52 ~~~~Wd~Fy~rh~~~~FFKdRPEL~~~~-~~~~vLEvGCG~Gnta~pll~~~~-----~~i~AtD~s 112 (178)
.+.+|+.+|...- ||+.... .....+=.|+|||.|+.=+....+ .+++++|-.
T Consensus 147 NpaN~~aH~~tT~--------~EI~~~~~g~~d~fVagvGTGGTitGvar~Lk~~~p~i~iv~vdP~ 205 (300)
T COG0031 147 NPANPEAHYETTG--------PEIWQQTDGKVDAFVAGVGTGGTITGVARYLKERNPNVRIVAVDPE 205 (300)
T ss_pred CCccHHHHHhhhH--------HHHHHHhCCCCCEEEEeCCcchhHHHHHHHHHhhCCCcEEEEECCC
Confidence 4567888874443 8876543 336678899999999988886543 455677644
No 234
>PF01234 NNMT_PNMT_TEMT: NNMT/PNMT/TEMT family; InterPro: IPR000940 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Several cytoplasmic vertebrate methyltransferases are evolutionary related [], including nicotinamide N-methyltransferase (2.1.1.1 from EC) (NNMT); phenylethanolamine N-methyltransferase (2.1.1.28 from EC) (PNMT); and thioether S-methyltransferase (2.1.1.96 from EC) (TEMT). NNMT catalyzes the N-methylation of nicotinamide and other pyridines to form pyridinium ions. This activity is important for the biotransformation of many drugs and xenobiotic compounds. PNMT catalyzes the last step in catecholamine biosynthesis, the conversion of noradrenalin to adrenalin; and TEMT catalyzes the methylation of dimethyl sulphide into trimethylsulphonium. These three enzymes use S-adenosyl-L-methionine as the methyl donor. They are proteins of 30 to 32 kDa.; GO: 0008168 methyltransferase activity; PDB: 2IIP_C 3ROD_A 2OBF_A 3HCA_B 2ONY_B 3KR1_A 2OPB_B 3KQP_B 2AN4_B 3KQM_A ....
Probab=34.61 E-value=27 Score=30.67 Aligned_cols=28 Identities=14% Similarity=-0.047 Sum_probs=18.4
Q ss_pred CceeEeeccCCchhHHHhHHhhh--hheeeee
Q 035595 81 AALDAKGNFGNGSLIADFSVVIK--MKILASL 110 (178)
Q Consensus 81 ~~~vLEvGCG~Gnta~pll~~~~--~~i~AtD 110 (178)
..++|+||||. |+.+++.... ..|+.+|
T Consensus 57 g~~llDiGsGP--tiy~~lsa~~~f~~I~l~d 86 (256)
T PF01234_consen 57 GETLLDIGSGP--TIYQLLSACEWFEEIVLSD 86 (256)
T ss_dssp EEEEEEES-TT----GGGTTGGGTEEEEEEEE
T ss_pred CCEEEEeCCCc--HHHhhhhHHHhhcceEEee
Confidence 46899999987 8888886542 3677777
No 235
>KOG2915 consensus tRNA(1-methyladenosine) methyltransferase, subunit GCD14 [Translation, ribosomal structure and biogenesis]
Probab=34.03 E-value=36 Score=31.38 Aligned_cols=34 Identities=12% Similarity=0.141 Sum_probs=26.0
Q ss_pred ccCCCceeEeeccCCchhHHHhHHhhh--hheeeee
Q 035595 77 NCHEAALDAKGNFGNGSLIADFSVVIK--MKILASL 110 (178)
Q Consensus 77 ~~~~~~~vLEvGCG~Gnta~pll~~~~--~~i~AtD 110 (178)
...|..+|||-|-|.||.-.-|+..++ -+.+--|
T Consensus 102 ~i~PGsvV~EsGTGSGSlShaiaraV~ptGhl~tfe 137 (314)
T KOG2915|consen 102 EIRPGSVVLESGTGSGSLSHAIARAVAPTGHLYTFE 137 (314)
T ss_pred cCCCCCEEEecCCCcchHHHHHHHhhCcCcceEEEE
Confidence 446789999999999999988888762 2454444
No 236
>COG2520 Predicted methyltransferase [General function prediction only]
Probab=29.57 E-value=74 Score=29.27 Aligned_cols=71 Identities=17% Similarity=0.125 Sum_probs=50.1
Q ss_pred CCceeEeeccCCchhHHHhHHhhhhheeeeecc--------cccccCCCcc-eEEEEcccccCCCCCCCCCcceEeeeeh
Q 035595 80 EAALDAKGNFGNGSLIADFSVVIKMKILASLVD--------GEYYNNGHEN-FSFLVDGEYYSNCPAVSGSQNYVILANL 150 (178)
Q Consensus 80 ~~~~vLEvGCG~Gnta~pll~~~~~~i~AtD~s--------~k~~~~g~~N-~~F~~~~~~~s~~p~~~~s~~~vil~nl 150 (178)
+..+||+.=+|+|-.++|++..-+..++|+|+. +.+.-+++++ +.....+.- -.|+-+ +.-|-+||-..
T Consensus 188 ~GE~V~DmFAGVGpfsi~~Ak~g~~~V~A~diNP~A~~~L~eNi~LN~v~~~v~~i~gD~r-ev~~~~-~~aDrIim~~p 265 (341)
T COG2520 188 EGETVLDMFAGVGPFSIPIAKKGRPKVYAIDINPDAVEYLKENIRLNKVEGRVEPILGDAR-EVAPEL-GVADRIIMGLP 265 (341)
T ss_pred CCCEEEEccCCcccchhhhhhcCCceEEEEecCHHHHHHHHHHHHhcCccceeeEEeccHH-Hhhhcc-ccCCEEEeCCC
Confidence 467999999999999999999876559999976 5555667777 555554442 233333 66677777665
Q ss_pred hh
Q 035595 151 KS 152 (178)
Q Consensus 151 ~~ 152 (178)
++
T Consensus 266 ~~ 267 (341)
T COG2520 266 KS 267 (341)
T ss_pred Cc
Confidence 53
No 237
>PRK13699 putative methylase; Provisional
Probab=28.93 E-value=49 Score=27.93 Aligned_cols=38 Identities=16% Similarity=0.091 Sum_probs=29.8
Q ss_pred CCCceeEeeccCCchhHHHhHHhhhhheeeeeccccccc
Q 035595 79 HEAALDAKGNFGNGSLIADFSVVIKMKILASLVDGEYYN 117 (178)
Q Consensus 79 ~~~~~vLEvGCG~Gnta~pll~~~~~~i~AtD~s~k~~~ 117 (178)
.+.+.||+-=||+|+|++--....+ ..++++++..+.+
T Consensus 162 ~~g~~vlDpf~Gsgtt~~aa~~~~r-~~~g~e~~~~y~~ 199 (227)
T PRK13699 162 HPNAIVLDPFAGSGSTCVAALQSGR-RYIGIELLEQYHR 199 (227)
T ss_pred CCCCEEEeCCCCCCHHHHHHHHcCC-CEEEEecCHHHHH
Confidence 4678999999999999988777665 7788887754433
No 238
>COG3963 Phospholipid N-methyltransferase [Lipid metabolism]
Probab=28.21 E-value=42 Score=29.02 Aligned_cols=21 Identities=10% Similarity=-0.054 Sum_probs=18.3
Q ss_pred CceeEeeccCCchhHHHhHHh
Q 035595 81 AALDAKGNFGNGSLIADFSVV 101 (178)
Q Consensus 81 ~~~vLEvGCG~Gnta~pll~~ 101 (178)
..-|||+|.|||-..-.||..
T Consensus 49 glpVlElGPGTGV~TkaIL~~ 69 (194)
T COG3963 49 GLPVLELGPGTGVITKAILSR 69 (194)
T ss_pred CCeeEEEcCCccHhHHHHHhc
Confidence 458999999999999888874
No 239
>KOG1539 consensus WD repeat protein [General function prediction only]
Probab=28.20 E-value=51 Score=34.24 Aligned_cols=68 Identities=16% Similarity=0.019 Sum_probs=40.9
Q ss_pred CCCceeEeeccCCchhHHHhHHhhhhheeeeecccccccCCCcceEEEEccccc--CCCC-C------CCCCcceEeeee
Q 035595 79 HEAALDAKGNFGNGSLIADFSVVIKMKILASLVDGEYYNNGHENFSFLVDGEYY--SNCP-A------VSGSQNYVILAN 149 (178)
Q Consensus 79 ~~~~~vLEvGCG~Gnta~pll~~~~~~i~AtD~s~k~~~~g~~N~~F~~~~~~~--s~~p-~------~~~s~~~vil~n 149 (178)
.|..-|+-|||++|.-++-=+. .-.+..+=|.....+.+++|+.+|... +.+| | |++.+=..++.|
T Consensus 211 sPaLDVVaiG~~~G~ViifNlK-----~dkil~sFk~d~g~VtslSFrtDG~p~las~~~~G~m~~wDLe~kkl~~v~~n 285 (910)
T KOG1539|consen 211 SPALDVVAIGLENGTVIIFNLK-----FDKILMSFKQDWGRVTSLSFRTDGNPLLASGRSNGDMAFWDLEKKKLINVTRN 285 (910)
T ss_pred CCcceEEEEeccCceEEEEEcc-----cCcEEEEEEccccceeEEEeccCCCeeEEeccCCceEEEEEcCCCeeeeeeec
Confidence 4667799999999976543222 222234444445778899999888732 2222 3 355555555555
Q ss_pred hh
Q 035595 150 LK 151 (178)
Q Consensus 150 l~ 151 (178)
..
T Consensus 286 ah 287 (910)
T KOG1539|consen 286 AH 287 (910)
T ss_pred cc
Confidence 44
No 240
>COG1565 Uncharacterized conserved protein [Function unknown]
Probab=28.03 E-value=55 Score=30.73 Aligned_cols=23 Identities=17% Similarity=0.170 Sum_probs=20.2
Q ss_pred CCceeEeeccCCchhHHHhHHhh
Q 035595 80 EAALDAKGNFGNGSLIADFSVVI 102 (178)
Q Consensus 80 ~~~~vLEvGCG~Gnta~pll~~~ 102 (178)
.+..|+|+|.|.|..+..||...
T Consensus 77 ~~~~lvEiGaG~G~l~~DiL~~l 99 (370)
T COG1565 77 APLKLVEIGAGRGTLASDILRTL 99 (370)
T ss_pred CCceEEEeCCCcChHHHHHHHHH
Confidence 35689999999999999999765
No 241
>cd00315 Cyt_C5_DNA_methylase Cytosine-C5 specific DNA methylases; Methyl transfer reactions play an important role in many aspects of biology. Cytosine-specific DNA methylases are found both in prokaryotes and eukaryotes. DNA methylation, or the covalent addition of a methyl group to cytosine within the context of the CpG dinucleotide, has profound effects on the mammalian genome. These effects include transcriptional repression via inhibition of transcription factor binding or the recruitment of methyl-binding proteins and their associated chromatin remodeling factors, X chromosome inactivation, imprinting and the suppression of parasitic DNA sequences. DNA methylation is also essential for proper embryonic development and is an important player in both DNA repair and genome stability.
Probab=27.93 E-value=68 Score=27.57 Aligned_cols=31 Identities=13% Similarity=-0.084 Sum_probs=21.9
Q ss_pred eeEeeccCCchhHHHhHHhhhhheeeeeccc
Q 035595 83 LDAKGNFGNGSLIADFSVVIKMKILASLVDG 113 (178)
Q Consensus 83 ~vLEvGCG~Gnta~pll~~~~~~i~AtD~s~ 113 (178)
+|+++-||.|...+-+...--..++|+|.+.
T Consensus 2 ~v~dLFsG~Gg~~~gl~~~G~~~v~a~e~~~ 32 (275)
T cd00315 2 RVIDLFAGIGGFRLGLEKAGFEIVAANEIDK 32 (275)
T ss_pred cEEEEccCcchHHHHHHHcCCEEEEEEeCCH
Confidence 6899999999886655554222567888773
No 242
>COG0144 Sun tRNA and rRNA cytosine-C5-methylases [Translation, ribosomal structure and biogenesis]
Probab=27.92 E-value=1.2e+02 Score=27.37 Aligned_cols=82 Identities=11% Similarity=0.130 Sum_probs=52.2
Q ss_pred cccccCCCceeEeeccCCchhHHHhHHhhhh---heeeeecc--------cccccCCCcceEEEEcccccCCCCCCCCCc
Q 035595 74 ELSNCHEAALDAKGNFGNGSLIADFSVVIKM---KILASLVD--------GEYYNNGHENFSFLVDGEYYSNCPAVSGSQ 142 (178)
Q Consensus 74 EL~~~~~~~~vLEvGCG~Gnta~pll~~~~~---~i~AtD~s--------~k~~~~g~~N~~F~~~~~~~s~~p~~~~s~ 142 (178)
.++...+..+||++=.+-|+=..-|++.-.+ .++|.|++ +....-|+.|+.....+.- -++.-.++..
T Consensus 150 ~~L~p~pge~VlD~cAAPGGKTthla~~~~~~~~iV~A~D~~~~Rl~~l~~nl~RlG~~nv~~~~~d~~-~~~~~~~~~~ 228 (355)
T COG0144 150 LVLDPKPGERVLDLCAAPGGKTTHLAELMENEGAIVVAVDVSPKRLKRLRENLKRLGVRNVIVVNKDAR-RLAELLPGGE 228 (355)
T ss_pred HHcCCCCcCEEEEECCCCCCHHHHHHHhcCCCCceEEEEcCCHHHHHHHHHHHHHcCCCceEEEecccc-cccccccccC
Confidence 4455567799999999999988888876532 35999987 4556668888555554332 1111111110
Q ss_pred ceEeeeehhhhhhhccCCCCccc
Q 035595 143 NYVILANLKSYRRVMFDSPDTEE 165 (178)
Q Consensus 143 ~~vil~nl~~~~~~~~~~~~~~~ 165 (178)
++.||..|-|=+-.
T Consensus 229 ---------~fD~iLlDaPCSg~ 242 (355)
T COG0144 229 ---------KFDRILLDAPCSGT 242 (355)
T ss_pred ---------cCcEEEECCCCCCC
Confidence 56677777776543
No 243
>PF04839 PSRP-3_Ycf65: Plastid and cyanobacterial ribosomal protein (PSRP-3 / Ycf65); InterPro: IPR006924 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This small acidic protein is found in 30S ribosomal subunit of cyanobacteria and plant plastids. In plants it has been named plastid-specific ribosomal protein 3 (PSRP-3), and in cyanobacteria it is named Ycf65. Plastid-specific ribosomal proteins may mediate the effects of nuclear factors on plastid translation. The acidic PSRPs are thought to contribute to protein-protein interactions in the 30S subunit, and are not thought to bind RNA [].; GO: 0003735 structural constituent of ribosome, 0006412 translation, 0005622 intracellular, 0005840 ribosome, 0009536 plastid; PDB: 2KT9_A.
Probab=27.61 E-value=27 Score=24.22 Aligned_cols=18 Identities=44% Similarity=0.931 Sum_probs=13.9
Q ss_pred CCcchhHHHhhhccCcccc
Q 035595 15 KDFEWETLKQEIENDPSLQ 33 (178)
Q Consensus 15 ~DFeWe~lr~EvE~~~s~~ 33 (178)
+| .||+|+.|+|+-|=++
T Consensus 10 ~D-AWe~lk~eLe~K~WIs 27 (49)
T PF04839_consen 10 ED-AWEQLKNELESKPWIS 27 (49)
T ss_dssp S--HHHHHHHHHHHSTTS-
T ss_pred Cc-HHHHHHHHHhcCCCCC
Confidence 46 8999999999987644
No 244
>KOG2793 consensus Putative N2,N2-dimethylguanosine tRNA methyltransferase [RNA processing and modification]
Probab=27.58 E-value=53 Score=28.94 Aligned_cols=30 Identities=7% Similarity=-0.062 Sum_probs=17.4
Q ss_pred CceeEeeccCCchhHHHhHHhhhhheeeee
Q 035595 81 AALDAKGNFGNGSLIADFSVVIKMKILASL 110 (178)
Q Consensus 81 ~~~vLEvGCG~Gnta~pll~~~~~~i~AtD 110 (178)
...|||+|.|||=-++-.+-.-...+.-||
T Consensus 87 ~~~vlELGsGtglvG~~aa~~~~~~v~ltD 116 (248)
T KOG2793|consen 87 YINVLELGSGTGLVGILAALLLGAEVVLTD 116 (248)
T ss_pred ceeEEEecCCccHHHHHHHHHhcceeccCC
Confidence 457999999999333222222333455555
No 245
>COG0357 GidB Predicted S-adenosylmethionine-dependent methyltransferase involved in bacterial cell division [Cell envelope biogenesis, outer membrane]
Probab=27.55 E-value=43 Score=28.80 Aligned_cols=50 Identities=14% Similarity=-0.005 Sum_probs=31.7
Q ss_pred CceeEeeccCCchhHHHhHHhh-hhheeeeecc--------cccccCCCcceEEEEccc
Q 035595 81 AALDAKGNFGNGSLIADFSVVI-KMKILASLVD--------GEYYNNGHENFSFLVDGE 130 (178)
Q Consensus 81 ~~~vLEvGCG~Gnta~pll~~~-~~~i~AtD~s--------~k~~~~g~~N~~F~~~~~ 130 (178)
..++++||.|.|-=++||+-.. ..+++=.|-. .-..+-|..|+.+..+-+
T Consensus 68 ~~~~~DIGSGaGfPGipLAI~~p~~~vtLles~~Kk~~FL~~~~~eL~L~nv~i~~~Ra 126 (215)
T COG0357 68 AKRVLDIGSGAGFPGIPLAIAFPDLKVTLLESLGKKIAFLREVKKELGLENVEIVHGRA 126 (215)
T ss_pred CCEEEEeCCCCCCchhhHHHhccCCcEEEEccCchHHHHHHHHHHHhCCCCeEEehhhH
Confidence 6899999999999999988432 2233333322 112344777777776443
No 246
>KOG1481 consensus Cysteine synthase [Amino acid transport and metabolism]
Probab=27.29 E-value=65 Score=30.22 Aligned_cols=44 Identities=18% Similarity=0.210 Sum_probs=30.5
Q ss_pred chHHHHHHHhhcCCCCcccccccccc-cCCCceeEeeccCCchhHHHhHHhhh
Q 035595 52 DSDAWKRFHSRHSSGKFFKFTAELSN-CHEAALDAKGNFGNGSLIADFSVVIK 103 (178)
Q Consensus 52 ~~~~Wd~Fy~rh~~~~FFKdRPEL~~-~~~~~~vLEvGCG~Gnta~pll~~~~ 103 (178)
...+|..+|...- ||+-. +.+...-+-.|||||.|+.-+....+
T Consensus 191 N~AN~~aHyetTG--------PEIw~QtkGniDaFia~~GTGGTiaGVskyLk 235 (391)
T KOG1481|consen 191 NVANWLAHYETTG--------PEIWHQTKGNIDAFIAGTGTGGTIAGVSKYLK 235 (391)
T ss_pred CHHHHHHHhcCcC--------cHHHHhhcCCcceEEeccCCCcchHHHHHHHh
Confidence 4456777774332 88753 34566678899999999988776654
No 247
>PF12692 Methyltransf_17: S-adenosyl-L-methionine methyltransferase; PDB: 3IHT_B.
Probab=26.32 E-value=38 Score=28.54 Aligned_cols=30 Identities=20% Similarity=0.089 Sum_probs=16.8
Q ss_pred CceeEeeccCCchhHHHhHHhh--hhheeeeec
Q 035595 81 AALDAKGNFGNGSLIADFSVVI--KMKILASLV 111 (178)
Q Consensus 81 ~~~vLEvGCG~Gnta~pll~~~--~~~i~AtD~ 111 (178)
+.-|||+|=|+|-|= .+|... .-.|++.|+
T Consensus 29 ~G~VlElGLGNGRTy-dHLRe~~p~R~I~vfDR 60 (160)
T PF12692_consen 29 PGPVLELGLGNGRTY-DHLREIFPDRRIYVFDR 60 (160)
T ss_dssp -S-EEEE--TTSHHH-HHHHHH--SS-EEEEES
T ss_pred CCceEEeccCCCccH-HHHHHhCCCCeEEEEee
Confidence 457999999999994 444433 336666663
No 248
>COG1748 LYS9 Saccharopine dehydrogenase and related proteins [Amino acid transport and metabolism]
Probab=26.25 E-value=33 Score=32.02 Aligned_cols=84 Identities=13% Similarity=-0.105 Sum_probs=46.9
Q ss_pred ceeEeeccC-CchhHHHhHHhhh-hheeeeecc----cccccCCCcceEEEEccc-cc-CC----------CCCCCCCcc
Q 035595 82 ALDAKGNFG-NGSLIADFSVVIK-MKILASLVD----GEYYNNGHENFSFLVDGE-YY-SN----------CPAVSGSQN 143 (178)
Q Consensus 82 ~~vLEvGCG-~Gnta~pll~~~~-~~i~AtD~s----~k~~~~g~~N~~F~~~~~-~~-s~----------~p~~~~s~~ 143 (178)
+.||=|||| +|+++.-.+.... ..++..|++ .+....+...+++.+-+. +. .+ =.++|+.++
T Consensus 2 ~~ilviGaG~Vg~~va~~la~~~d~~V~iAdRs~~~~~~i~~~~~~~v~~~~vD~~d~~al~~li~~~d~VIn~~p~~~~ 81 (389)
T COG1748 2 MKILVIGAGGVGSVVAHKLAQNGDGEVTIADRSKEKCARIAELIGGKVEALQVDAADVDALVALIKDFDLVINAAPPFVD 81 (389)
T ss_pred CcEEEECCchhHHHHHHHHHhCCCceEEEEeCCHHHHHHHHhhccccceeEEecccChHHHHHHHhcCCEEEEeCCchhh
Confidence 468889997 6888887766654 688888887 333333333455555322 21 11 133455555
Q ss_pred eEeeeehhhhhhhccCCCCccc
Q 035595 144 YVILANLKSYRRVMFDSPDTEE 165 (178)
Q Consensus 144 ~vil~nl~~~~~~~~~~~~~~~ 165 (178)
.-||+...+-+--+.|.-.-++
T Consensus 82 ~~i~ka~i~~gv~yvDts~~~~ 103 (389)
T COG1748 82 LTILKACIKTGVDYVDTSYYEE 103 (389)
T ss_pred HHHHHHHHHhCCCEEEcccCCc
Confidence 5555555555544555444443
No 249
>PF11968 DUF3321: Putative methyltransferase (DUF3321); InterPro: IPR021867 This family is conserved in fungi and is annotated as being a nucleolar protein.
Probab=25.58 E-value=82 Score=27.56 Aligned_cols=60 Identities=8% Similarity=-0.118 Sum_probs=38.2
Q ss_pred CCceeEeeccCCchhHHHhHHhhhhheeeeecccccccCCCcceEEEEcccccCCCCCCCCCcceEee
Q 035595 80 EAALDAKGNFGNGSLIADFSVVIKMKILASLVDGEYYNNGHENFSFLVDGEYYSNCPAVSGSQNYVIL 147 (178)
Q Consensus 80 ~~~~vLEvGCG~Gnta~pll~~~~~~i~AtD~s~k~~~~g~~N~~F~~~~~~~s~~p~~~~s~~~vil 147 (178)
+..++|||||=....++--.... .++++|... +..++..-+|..- ++|..=.+.-|+|++
T Consensus 51 ~~lrlLEVGals~~N~~s~~~~f--dvt~IDLns--~~~~I~qqDFm~r----plp~~~~e~FdvIs~ 110 (219)
T PF11968_consen 51 PKLRLLEVGALSTDNACSTSGWF--DVTRIDLNS--QHPGILQQDFMER----PLPKNESEKFDVISL 110 (219)
T ss_pred ccceEEeecccCCCCcccccCce--eeEEeecCC--CCCCceeeccccC----CCCCCcccceeEEEE
Confidence 34799999987444333322222 478889876 6778888888763 333333566777765
No 250
>KOG2730 consensus Methylase [General function prediction only]
Probab=25.42 E-value=1e+02 Score=27.87 Aligned_cols=50 Identities=16% Similarity=0.149 Sum_probs=32.0
Q ss_pred CCceeEeeccCCchhHHHhHHhhhhheeeeecc--------cccccCCCcc-eEEEEccc
Q 035595 80 EAALDAKGNFGNGSLIADFSVVIKMKILASLVD--------GEYYNNGHEN-FSFLVDGE 130 (178)
Q Consensus 80 ~~~~vLEvGCG~Gnta~pll~~~~~~i~AtD~s--------~k~~~~g~~N-~~F~~~~~ 130 (178)
...+|++.=||+|...+-.+... +.++++|++ ..+.-=|+.+ ++|-++..
T Consensus 94 ~~~~iidaf~g~gGntiqfa~~~-~~VisIdiDPikIa~AkhNaeiYGI~~rItFI~GD~ 152 (263)
T KOG2730|consen 94 NAEVIVDAFCGVGGNTIQFALQG-PYVIAIDIDPVKIACARHNAEVYGVPDRITFICGDF 152 (263)
T ss_pred CcchhhhhhhcCCchHHHHHHhC-CeEEEEeccHHHHHHHhccceeecCCceeEEEechH
Confidence 45678888888766555555554 478899976 2222225554 88988766
No 251
>COG0116 Predicted N6-adenine-specific DNA methylase [DNA replication, recombination, and repair]
Probab=25.23 E-value=1.4e+02 Score=28.10 Aligned_cols=65 Identities=14% Similarity=0.140 Sum_probs=41.3
Q ss_pred CCceeEeeccCCchhHHHhHHhhh---------------------------------h-------heeeeecc-------
Q 035595 80 EAALDAKGNFGNGSLIADFSVVIK---------------------------------M-------KILASLVD------- 112 (178)
Q Consensus 80 ~~~~vLEvGCG~Gnta~pll~~~~---------------------------------~-------~i~AtD~s------- 112 (178)
+...+++-=||.|+.++--+--.. - .++++|++
T Consensus 191 ~~~pl~DPmCGSGTi~IEAAl~~~niAPg~~R~~~f~~w~~~~~~lw~~~~~ea~~~a~~~~~~~~~~G~Did~r~i~~A 270 (381)
T COG0116 191 PDEPLLDPMCGSGTILIEAALIAANIAPGLNRRFGFEFWDWFDKDLWDKLREEAEERARRGKELPIIYGSDIDPRHIEGA 270 (381)
T ss_pred CCCccccCCCCccHHHHHHHHhccccCCccccccchhhhhhccHHHHHHHHHHHHHHHhhcCccceEEEecCCHHHHHHH
Confidence 446899999999998876553221 0 25688876
Q ss_pred -cccccCCCcc-eEEEEcccccCCCCCCCCCcceEe
Q 035595 113 -GEYYNNGHEN-FSFLVDGEYYSNCPAVSGSQNYVI 146 (178)
Q Consensus 113 -~k~~~~g~~N-~~F~~~~~~~s~~p~~~~s~~~vi 146 (178)
..+.++|+.- |.|.+.... .+++-+ ++.++||
T Consensus 271 k~NA~~AGv~d~I~f~~~d~~-~l~~~~-~~~gvvI 304 (381)
T COG0116 271 KANARAAGVGDLIEFKQADAT-DLKEPL-EEYGVVI 304 (381)
T ss_pred HHHHHhcCCCceEEEEEcchh-hCCCCC-CcCCEEE
Confidence 3445566665 889987774 333333 4555544
No 252
>PF03605 DcuA_DcuB: Anaerobic c4-dicarboxylate membrane transporter; InterPro: IPR004668 These proteins are members of the C4-Dicarboxylate Uptake (Dcu) family. Most proteins in this family are predicted to have 12 GES predicted transmembrane regions; however the one member whose membrane topology has been experimentally determined has 10 transmembrane regions, with both the N- and C-termini localized to the periplasm []. The DcuA and DcuB proteins are involved in the transport of aspartate, malate, fumarate and succinate in many species [, , ], and are thought to function as antiporters with any two of these substrates. Since DcuA is encoded in an operon with the gene for aspartase, and DcuB is encoded in an operon with the gene for fumarase, their physiological functions may be to catalyze aspartate:fumarate and fumarate:malate exchange during the anaerobic utilization of aspartate and fumarate, respectively []. The Escherichia coli DcuA and DcuB proteins have very different expression patterns []. DcuA is constitutively expressed; DcuB is strongly induced anaerobically by FNR and C4-dicarboxylates, while it is repressed by nitrate and subject to CRP-mediated catabolite repression.; GO: 0015556 C4-dicarboxylate transmembrane transporter activity, 0015740 C4-dicarboxylate transport, 0016021 integral to membrane
Probab=24.85 E-value=31 Score=32.22 Aligned_cols=20 Identities=20% Similarity=0.029 Sum_probs=17.3
Q ss_pred eeEeeccCCchhHHHhHHhh
Q 035595 83 LDAKGNFGNGSLIADFSVVI 102 (178)
Q Consensus 83 ~vLEvGCG~Gnta~pll~~~ 102 (178)
.++-+.||||++++.+++.+
T Consensus 93 ~~~T~~~GTgh~a~s~lPVI 112 (364)
T PF03605_consen 93 YLFTFLAGTGHVAYSLLPVI 112 (364)
T ss_pred HHHHHHhcccHHHHHhhHHH
Confidence 46788999999999999865
No 253
>COG1041 Predicted DNA modification methylase [DNA replication, recombination, and repair]
Probab=23.78 E-value=35 Score=31.67 Aligned_cols=43 Identities=14% Similarity=0.239 Sum_probs=30.5
Q ss_pred CCCceeEeeccCCchhHHHhHHhhhhheeeeecccccccCCCcc
Q 035595 79 HEAALDAKGNFGNGSLIADFSVVIKMKILASLVDGEYYNNGHEN 122 (178)
Q Consensus 79 ~~~~~vLEvGCG~Gnta~pll~~~~~~i~AtD~s~k~~~~g~~N 122 (178)
.+...||+==||||+.++-.--.- .+.+++|++.+.....-.|
T Consensus 196 ~~G~~vlDPFcGTGgiLiEagl~G-~~viG~Did~~mv~gak~N 238 (347)
T COG1041 196 KRGELVLDPFCGTGGILIEAGLMG-ARVIGSDIDERMVRGAKIN 238 (347)
T ss_pred ccCCEeecCcCCccHHHHhhhhcC-ceEeecchHHHHHhhhhhh
Confidence 356799999999999887654433 4788999885554444444
No 254
>KOG1663 consensus O-methyltransferase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=23.46 E-value=1.1e+02 Score=27.23 Aligned_cols=68 Identities=15% Similarity=0.195 Sum_probs=42.2
Q ss_pred CCceeEeeccCCchhHHHhHHhh--hhheeeeecccccc--------cCCCcc-eEEEEcccccCCC---CCC-CCCcce
Q 035595 80 EAALDAKGNFGNGSLIADFSVVI--KMKILASLVDGEYY--------NNGHEN-FSFLVDGEYYSNC---PAV-SGSQNY 144 (178)
Q Consensus 80 ~~~~vLEvGCG~Gnta~pll~~~--~~~i~AtD~s~k~~--------~~g~~N-~~F~~~~~~~s~~---p~~-~~s~~~ 144 (178)
.+.++||||-=||-.++-.+... .-.++|.|+...+| .+|+.- ++|....+..++. +.. +++-|.
T Consensus 73 ~ak~~lelGvfTGySaL~~Alalp~dGrv~a~eid~~~~~~~~~~~k~agv~~KI~~i~g~a~esLd~l~~~~~~~tfDf 152 (237)
T KOG1663|consen 73 NAKRTLELGVFTGYSALAVALALPEDGRVVAIEIDADAYEIGLELVKLAGVDHKITFIEGPALESLDELLADGESGTFDF 152 (237)
T ss_pred CCceEEEEecccCHHHHHHHHhcCCCceEEEEecChHHHHHhHHHHHhccccceeeeeecchhhhHHHHHhcCCCCceeE
Confidence 47899999977777777666543 45889988773322 233333 7777766644444 333 566666
Q ss_pred Eee
Q 035595 145 VIL 147 (178)
Q Consensus 145 vil 147 (178)
+.+
T Consensus 153 aFv 155 (237)
T KOG1663|consen 153 AFV 155 (237)
T ss_pred EEE
Confidence 654
No 255
>PRK01747 mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltransferase/FAD-dependent cmnm(5)s(2)U34 oxidoreductase; Reviewed
Probab=23.16 E-value=66 Score=30.84 Aligned_cols=23 Identities=17% Similarity=0.106 Sum_probs=18.3
Q ss_pred CCCceeEeeccCCchhHHHhHHh
Q 035595 79 HEAALDAKGNFGNGSLIADFSVV 101 (178)
Q Consensus 79 ~~~~~vLEvGCG~Gnta~pll~~ 101 (178)
...-+|||+|.|+|-..+-.+..
T Consensus 56 ~~~~~i~e~gfG~G~N~l~~~~~ 78 (662)
T PRK01747 56 RRRFVIAETGFGTGLNFLATWQA 78 (662)
T ss_pred CCcEEEEecCcchHHHHHHHHHH
Confidence 44589999999999877777643
No 256
>PF11899 DUF3419: Protein of unknown function (DUF3419); InterPro: IPR021829 This family of proteins are functionally uncharacterised. This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 398 to 802 amino acids in length.
Probab=21.63 E-value=88 Score=28.94 Aligned_cols=36 Identities=14% Similarity=-0.007 Sum_probs=27.7
Q ss_pred cccCCCceeEeeccCCchhHHHhHHhhhhheeeeecc
Q 035595 76 SNCHEAALDAKGNFGNGSLIADFSVVIKMKILASLVD 112 (178)
Q Consensus 76 ~~~~~~~~vLEvGCG~Gnta~pll~~~~~~i~AtD~s 112 (178)
+.-++.++||-|. +.|-.+++++...-.+|+|+|.+
T Consensus 31 L~i~~~d~vl~It-SaG~N~L~yL~~~P~~I~aVDlN 66 (380)
T PF11899_consen 31 LNIGPDDRVLTIT-SAGCNALDYLLAGPKRIHAVDLN 66 (380)
T ss_pred hCCCCCCeEEEEc-cCCchHHHHHhcCCceEEEEeCC
Confidence 4556888999994 56777888877654499999977
No 257
>PF11220 DUF3015: Protein of unknown function (DUF3015); InterPro: IPR021383 This bacterial family of proteins has no known function.
Probab=20.48 E-value=26 Score=28.68 Aligned_cols=11 Identities=27% Similarity=0.440 Sum_probs=9.4
Q ss_pred eccCCchhHHH
Q 035595 87 GNFGNGSLIAD 97 (178)
Q Consensus 87 vGCG~Gnta~p 97 (178)
.|||-|+.+|+
T Consensus 9 ~gCGlGs~vf~ 19 (144)
T PF11220_consen 9 PGCGLGSMVFK 19 (144)
T ss_pred CCCCcceeeec
Confidence 49999999974
Done!