BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 035597
(86 letters)
Database: nr
23,463,169 sequences; 8,064,228,071 total letters
Searching..................................................done
>gi|351722524|ref|NP_001236735.1| uncharacterized protein LOC100306047 [Glycine max]
gi|356494887|ref|XP_003516313.1| PREDICTED: AP-4 complex subunit sigma-like [Glycine max]
gi|255627383|gb|ACU14036.1| unknown [Glycine max]
Length = 143
Score = 47.8 bits (112), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 32/66 (48%), Positives = 39/66 (59%), Gaps = 21/66 (31%)
Query: 33 NKLAILKFIYLLVETAD------CGIVIV-----------EKVMDGCMAGTSKSNILTP- 74
N+LAIL+FI+LLVET D C + I+ E VM+GC+ TSKSNILTP
Sbjct: 77 NELAILEFIHLLVETMDRHFGNVCELDIMFHLEKAHFMLEEMVMNGCIVETSKSNILTPI 136
Query: 75 ---DKT 77
DKT
Sbjct: 137 QLMDKT 142
>gi|388515583|gb|AFK45853.1| unknown [Lotus japonicus]
Length = 143
Score = 47.8 bits (112), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 29/59 (49%), Positives = 36/59 (61%), Gaps = 17/59 (28%)
Query: 33 NKLAILKFIYLLVETAD------CGIVIV-----------EKVMDGCMAGTSKSNILTP 74
N+LAIL+FI+LLVET D C + I+ E VM+GC+ TSKSNILTP
Sbjct: 77 NELAILEFIHLLVETMDRHFGNVCELDIMFHLEKAHFMLEEMVMNGCIVETSKSNILTP 135
>gi|357510453|ref|XP_003625515.1| AP-4 complex subunit sigma-1 [Medicago truncatula]
gi|357520783|ref|XP_003630680.1| AP-4 complex subunit sigma-1 [Medicago truncatula]
gi|355500530|gb|AES81733.1| AP-4 complex subunit sigma-1 [Medicago truncatula]
gi|355524702|gb|AET05156.1| AP-4 complex subunit sigma-1 [Medicago truncatula]
gi|388520121|gb|AFK48122.1| unknown [Medicago truncatula]
Length = 143
Score = 47.8 bits (112), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 32/66 (48%), Positives = 39/66 (59%), Gaps = 21/66 (31%)
Query: 33 NKLAILKFIYLLVETAD------CGIVIV-----------EKVMDGCMAGTSKSNILTP- 74
N+LAIL+FI+LLVET D C + I+ E VM+GC+ TSKSNILTP
Sbjct: 77 NELAILEFIHLLVETMDRHFGNVCELDIMFHLEKVHFMLEEMVMNGCIVETSKSNILTPI 136
Query: 75 ---DKT 77
DKT
Sbjct: 137 QLMDKT 142
>gi|224087999|ref|XP_002308286.1| predicted protein [Populus trichocarpa]
gi|222854262|gb|EEE91809.1| predicted protein [Populus trichocarpa]
Length = 143
Score = 46.2 bits (108), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 31/66 (46%), Positives = 39/66 (59%), Gaps = 21/66 (31%)
Query: 33 NKLAILKFIYLLVETAD------CGIVIV-----------EKVMDGCMAGTSKSNILTP- 74
N+LAIL+FI+LLVET D C + I+ E VM+GC+ TSKSNIL+P
Sbjct: 77 NELAILEFIHLLVETMDRHFGNVCELDIMFHLEKAHFMLEEMVMNGCIVETSKSNILSPI 136
Query: 75 ---DKT 77
DKT
Sbjct: 137 QLMDKT 142
>gi|449435802|ref|XP_004135683.1| PREDICTED: AP-4 complex subunit sigma-like [Cucumis sativus]
gi|449489825|ref|XP_004158427.1| PREDICTED: AP-4 complex subunit sigma-like [Cucumis sativus]
Length = 143
Score = 46.2 bits (108), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 28/59 (47%), Positives = 36/59 (61%), Gaps = 17/59 (28%)
Query: 33 NKLAILKFIYLLVETAD------CGIVIV-----------EKVMDGCMAGTSKSNILTP 74
N+LAIL+FI+LLVET D C + I+ E VM+GC+ TSKSNIL+P
Sbjct: 77 NELAILEFIHLLVETMDRHFGNVCELDIMFHLEKAHFMLEEMVMNGCIVETSKSNILSP 135
>gi|15224841|ref|NP_179569.1| AP-4 complex subunit sigma [Arabidopsis thaliana]
gi|297836278|ref|XP_002886021.1| clathrin adaptor complex small chain family protein [Arabidopsis
lyrata subsp. lyrata]
gi|75100553|sp|O82201.1|AP4S_ARATH RecName: Full=AP-4 complex subunit sigma; AltName: Full=AP-4
adapter complex subunit sigma; AltName:
Full=Adapter-related protein complex 4 subunit sigma;
AltName: Full=Sigma subunit of AP-4; AltName:
Full=Sigma4-adaptin
gi|13877845|gb|AAK44000.1|AF370185_1 putative clathrin assembly protein [Arabidopsis thaliana]
gi|3687239|gb|AAC62137.1| putative clathrin assembly protein [Arabidopsis thaliana]
gi|16323510|gb|AAL15249.1| putative clathrin assembly protein [Arabidopsis thaliana]
gi|21593846|gb|AAM65813.1| putative clathrin assembly protein [Arabidopsis thaliana]
gi|297331861|gb|EFH62280.1| clathrin adaptor complex small chain family protein [Arabidopsis
lyrata subsp. lyrata]
gi|330251832|gb|AEC06926.1| AP-4 complex subunit sigma [Arabidopsis thaliana]
Length = 143
Score = 44.7 bits (104), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 27/59 (45%), Positives = 36/59 (61%), Gaps = 17/59 (28%)
Query: 33 NKLAILKFIYLLVETAD------CGIVIV-----------EKVMDGCMAGTSKSNILTP 74
N+LAIL+FI+LLVET D C + I+ E VM+GC+ TSK+NIL+P
Sbjct: 77 NELAILEFIHLLVETMDKHFGNVCELDIMFHLEKAHFMLEEMVMNGCIVETSKANILSP 135
>gi|356511397|ref|XP_003524413.1| PREDICTED: AP-4 complex subunit sigma-like [Glycine max]
Length = 107
Score = 44.7 bits (104), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 28/66 (42%), Positives = 37/66 (56%), Gaps = 21/66 (31%)
Query: 33 NKLAILKFIYLLVETAD-----------------CGIVIVEKVMDGCMAGTSKSNILTP- 74
N+LAIL+FI+LLVET D ++ E VM+GC+ TSK+NIL+P
Sbjct: 41 NELAILEFIHLLVETMDRHFGNVNELDIMFHLEKVHFMLEEIVMNGCIVETSKANILSPI 100
Query: 75 ---DKT 77
DKT
Sbjct: 101 QLLDKT 106
>gi|255546257|ref|XP_002514188.1| AP-4 complex subunit sigma-1, putative [Ricinus communis]
gi|223546644|gb|EEF48142.1| AP-4 complex subunit sigma-1, putative [Ricinus communis]
Length = 143
Score = 44.7 bits (104), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 30/66 (45%), Positives = 38/66 (57%), Gaps = 21/66 (31%)
Query: 33 NKLAILKFIYLLVETAD------CGIVIV-----------EKVMDGCMAGTSKSNILTP- 74
N+LAIL+FI+LLVET D C + I+ E VM+GC+ TSK+NIL P
Sbjct: 77 NELAILEFIHLLVETMDRHFGNVCELDIMFHLEKAHFMLEEMVMNGCIVETSKANILAPI 136
Query: 75 ---DKT 77
DKT
Sbjct: 137 QLMDKT 142
>gi|297738726|emb|CBI27971.3| unnamed protein product [Vitis vinifera]
Length = 136
Score = 44.3 bits (103), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 27/59 (45%), Positives = 35/59 (59%), Gaps = 17/59 (28%)
Query: 33 NKLAILKFIYLLVETAD------CGIVIV-----------EKVMDGCMAGTSKSNILTP 74
N+LAIL+FI+LLVET D C + I+ E VM+GC+ TSK+NIL P
Sbjct: 70 NELAILEFIHLLVETMDRHFGNVCELDIMFHLEKAHFMLEEMVMNGCIVETSKANILAP 128
>gi|226497166|ref|NP_001151687.1| LOC100285322 [Zea mays]
gi|194702836|gb|ACF85502.1| unknown [Zea mays]
gi|195648847|gb|ACG43891.1| AP-4 complex subunit sigma-1 [Zea mays]
gi|413922183|gb|AFW62115.1| AP-4 complex subunit sigma-1 [Zea mays]
Length = 143
Score = 44.3 bits (103), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 27/59 (45%), Positives = 34/59 (57%), Gaps = 17/59 (28%)
Query: 33 NKLAILKFIYLLVETAD------CGIVIV-----------EKVMDGCMAGTSKSNILTP 74
N+LAIL+FI+LLVET D C + I+ E VM+GC+ TSK NIL P
Sbjct: 77 NELAILEFIHLLVETMDRHFGNVCELDIMFHLEKVHFMLEEMVMNGCIVETSKQNILAP 135
>gi|388495128|gb|AFK35630.1| unknown [Lotus japonicus]
Length = 143
Score = 44.3 bits (103), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 27/59 (45%), Positives = 35/59 (59%), Gaps = 17/59 (28%)
Query: 33 NKLAILKFIYLLVETAD------CGIVIV-----------EKVMDGCMAGTSKSNILTP 74
N+LAIL+FI+LLVET D C + I+ E VM+GC+ TSK+NIL P
Sbjct: 77 NELAILEFIHLLVETMDRHFGNVCELDIMFHLEKVHFMLEEMVMNGCIVETSKANILAP 135
>gi|326533246|dbj|BAJ93595.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 132
Score = 44.3 bits (103), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 27/59 (45%), Positives = 34/59 (57%), Gaps = 17/59 (28%)
Query: 33 NKLAILKFIYLLVETAD------CGIVIV-----------EKVMDGCMAGTSKSNILTP 74
N+LAIL+FI+LLVET D C + I+ E VM+GC+ TSK NIL P
Sbjct: 66 NELAILEFIHLLVETMDRHFGNVCELDIMFHLEKVHFMLEEMVMNGCIVETSKQNILAP 124
>gi|225445033|ref|XP_002283179.1| PREDICTED: AP-4 complex subunit sigma [Vitis vinifera]
Length = 143
Score = 44.3 bits (103), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 27/59 (45%), Positives = 35/59 (59%), Gaps = 17/59 (28%)
Query: 33 NKLAILKFIYLLVETAD------CGIVIV-----------EKVMDGCMAGTSKSNILTP 74
N+LAIL+FI+LLVET D C + I+ E VM+GC+ TSK+NIL P
Sbjct: 77 NELAILEFIHLLVETMDRHFGNVCELDIMFHLEKAHFMLEEMVMNGCIVETSKANILAP 135
>gi|115481714|ref|NP_001064450.1| Os10g0368400 [Oryza sativa Japonica Group]
gi|22830276|gb|AAN08659.1| putative clathrin assembly protein [Oryza sativa Japonica Group]
gi|31431611|gb|AAP53362.1| Adapter-related protein complex 4 sigma 1 subunit, putative,
expressed [Oryza sativa Japonica Group]
gi|113639059|dbj|BAF26364.1| Os10g0368400 [Oryza sativa Japonica Group]
gi|125531640|gb|EAY78205.1| hypothetical protein OsI_33251 [Oryza sativa Indica Group]
gi|125574556|gb|EAZ15840.1| hypothetical protein OsJ_31256 [Oryza sativa Japonica Group]
Length = 143
Score = 43.9 bits (102), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 27/59 (45%), Positives = 34/59 (57%), Gaps = 17/59 (28%)
Query: 33 NKLAILKFIYLLVETAD------CGIVIV-----------EKVMDGCMAGTSKSNILTP 74
N+LAIL+FI+LLVET D C + I+ E VM+GC+ TSK NIL P
Sbjct: 77 NELAILEFIHLLVETMDRHFGNVCELDIMFHLEKVHFMLEEMVMNGCIVETSKQNILAP 135
>gi|357147723|ref|XP_003574458.1| PREDICTED: AP-4 complex subunit sigma-like [Brachypodium
distachyon]
gi|326501244|dbj|BAJ98853.1| predicted protein [Hordeum vulgare subsp. vulgare]
gi|326523491|dbj|BAJ92916.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 143
Score = 43.9 bits (102), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 27/59 (45%), Positives = 34/59 (57%), Gaps = 17/59 (28%)
Query: 33 NKLAILKFIYLLVETAD------CGIVIV-----------EKVMDGCMAGTSKSNILTP 74
N+LAIL+FI+LLVET D C + I+ E VM+GC+ TSK NIL P
Sbjct: 77 NELAILEFIHLLVETMDRHFGNVCELDIMFHLEKVHFMLEEMVMNGCIVETSKQNILAP 135
>gi|326487350|dbj|BAJ89659.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 68
Score = 43.9 bits (102), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 27/59 (45%), Positives = 34/59 (57%), Gaps = 17/59 (28%)
Query: 33 NKLAILKFIYLLVETAD------CGIVIV-----------EKVMDGCMAGTSKSNILTP 74
N+LAIL+FI+LLVET D C + I+ E VM+GC+ TSK NIL P
Sbjct: 2 NELAILEFIHLLVETMDRHFGNVCELDIMFHLEKVHFMLEEMVMNGCIVETSKQNILAP 60
>gi|242079031|ref|XP_002444284.1| hypothetical protein SORBIDRAFT_07g019495 [Sorghum bicolor]
gi|241940634|gb|EES13779.1| hypothetical protein SORBIDRAFT_07g019495 [Sorghum bicolor]
Length = 122
Score = 43.5 bits (101), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 27/59 (45%), Positives = 34/59 (57%), Gaps = 17/59 (28%)
Query: 33 NKLAILKFIYLLVETAD------CGIVIV-----------EKVMDGCMAGTSKSNILTP 74
N+LAIL+FI+LLVET D C + I+ E VM+GC+ TSK NIL P
Sbjct: 56 NELAILEFIHLLVETMDRHFGNVCELDIMFHLEKVHFMLEEMVMNGCIVETSKQNILAP 114
>gi|40253273|dbj|BAD05209.1| putative clathrin coat assembly protein AP17 [Oryza sativa Japonica
Group]
gi|215769211|dbj|BAH01440.1| unnamed protein product [Oryza sativa Japonica Group]
gi|218201101|gb|EEC83528.1| hypothetical protein OsI_29129 [Oryza sativa Indica Group]
gi|222640497|gb|EEE68629.1| hypothetical protein OsJ_27194 [Oryza sativa Japonica Group]
Length = 143
Score = 42.7 bits (99), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 26/59 (44%), Positives = 33/59 (55%), Gaps = 17/59 (28%)
Query: 33 NKLAILKFIYLLVETAD------CGIVIV-----------EKVMDGCMAGTSKSNILTP 74
N+LAIL+FI+L VET D C + I+ E VM+GC+ TSK NIL P
Sbjct: 77 NELAILEFIHLFVETMDRHFGNVCELDIMFHLEKVHFMLEEMVMNGCIVETSKQNILAP 135
>gi|356527740|ref|XP_003532466.1| PREDICTED: AP-4 complex subunit sigma-like [Glycine max]
Length = 164
Score = 42.0 bits (97), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 24/57 (42%), Positives = 34/57 (59%), Gaps = 15/57 (26%)
Query: 33 NKLAILKFIYLLVETAD---------------CGIVIVEKVMDGCMAGTSKSNILTP 74
++LAIL+FI+LLVET D ++ E VM+GC+ TSK+NIL+P
Sbjct: 77 SELAILEFIHLLVETMDRHPGNVLDMMFHLEKVHFMLEEMVMNGCIVETSKANILSP 133
>gi|237830689|ref|XP_002364642.1| AP-4 complex subunit sigma-1, putative [Toxoplasma gondii ME49]
gi|211962306|gb|EEA97501.1| AP-4 complex subunit sigma-1, putative [Toxoplasma gondii ME49]
gi|221487728|gb|EEE25960.1| conserved hypothetical protein [Toxoplasma gondii GT1]
gi|221507521|gb|EEE33125.1| clathrin coat assembly protein, putative [Toxoplasma gondii VEG]
Length = 145
Score = 40.0 bits (92), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 23/58 (39%), Positives = 32/58 (55%), Gaps = 17/58 (29%)
Query: 33 NKLAILKFIYLLVETAD-----------------CGIVIVEKVMDGCMAGTSKSNILT 73
N+LAIL+FI+ LVET D ++ E VMDGC+ T+KSN+L+
Sbjct: 77 NELAILEFIHCLVETLDKFFENVCELDIMFHLEKAHFILDEMVMDGCIVETNKSNVLS 134
>gi|302798471|ref|XP_002980995.1| hypothetical protein SELMODRAFT_113878 [Selaginella moellendorffii]
gi|302801438|ref|XP_002982475.1| hypothetical protein SELMODRAFT_421882 [Selaginella moellendorffii]
gi|300149574|gb|EFJ16228.1| hypothetical protein SELMODRAFT_421882 [Selaginella moellendorffii]
gi|300151049|gb|EFJ17696.1| hypothetical protein SELMODRAFT_113878 [Selaginella moellendorffii]
Length = 143
Score = 40.0 bits (92), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 23/59 (38%), Positives = 32/59 (54%), Gaps = 17/59 (28%)
Query: 33 NKLAILKFIYLLVETAD-----------------CGIVIVEKVMDGCMAGTSKSNILTP 74
N+LAIL+FI+ +VET D ++ E VM+GC+ T+KSNIL P
Sbjct: 77 NELAILEFIHCVVETMDRYFGNVCELDIMYHLEKAHFILEEMVMNGCIVETNKSNILGP 135
>gi|384253300|gb|EIE26775.1| Adaptor protein complex sigma subunit [Coccomyxa subellipsoidea
C-169]
Length = 144
Score = 39.3 bits (90), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 23/67 (34%), Positives = 34/67 (50%), Gaps = 17/67 (25%)
Query: 25 VVSMRTCGNKLAILKFIYLLVETAD-----------------CGIVIVEKVMDGCMAGTS 67
+V + N+LAIL+FI+ LVET D ++ E +M+GC+ T+
Sbjct: 70 IVGIDNEENELAILEFIHCLVETLDRYFSNVCELDLMFNLEMAHFIVDEMLMNGCIVETN 129
Query: 68 KSNILTP 74
K NIL P
Sbjct: 130 KQNILAP 136
>gi|401411813|ref|XP_003885354.1| putative AP-4 complex subunit sigma-1 [Neospora caninum Liverpool]
gi|325119773|emb|CBZ55326.1| putative AP-4 complex subunit sigma-1 [Neospora caninum Liverpool]
Length = 145
Score = 38.9 bits (89), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 24/58 (41%), Positives = 34/58 (58%), Gaps = 17/58 (29%)
Query: 33 NKLAILKFIYLLVETAD------CGIVIV-----------EKVMDGCMAGTSKSNILT 73
N+LAIL+FI+ LVET D C + I+ E VMDGC+ T+K+N+L+
Sbjct: 77 NELAILEFIHCLVETLDKFFENVCELDIMFHLEKAHFILDEMVMDGCIVETNKANVLS 134
>gi|168066797|ref|XP_001785318.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162663073|gb|EDQ49859.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 143
Score = 38.5 bits (88), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 27/66 (40%), Positives = 36/66 (54%), Gaps = 21/66 (31%)
Query: 33 NKLAILKFIYLLVETAD------CGIVIV-----------EKVMDGCMAGTSKSNILTP- 74
N+LAIL+FI+ +VET D C + I+ E VM+GC+ T+K NIL P
Sbjct: 77 NELAILEFIHCVVETMDRYFGNVCELDIMFHLEKAHFMLEEMVMNGCVVETNKQNILHPI 136
Query: 75 ---DKT 77
DKT
Sbjct: 137 QLMDKT 142
>gi|323453572|gb|EGB09443.1| hypothetical protein AURANDRAFT_24131 [Aureococcus anophagefferens]
Length = 152
Score = 37.4 bits (85), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 21/59 (35%), Positives = 31/59 (52%), Gaps = 17/59 (28%)
Query: 33 NKLAILKFIYLLVETAD-----------------CGIVIVEKVMDGCMAGTSKSNILTP 74
N+L IL+FI+ LVET D ++ E VM+GC+ T+K+N+L P
Sbjct: 78 NELGILEFIHALVETLDKYFESVCELDIMFNLEKAHFILDEMVMNGCIVETNKANVLKP 136
>gi|294899198|ref|XP_002776533.1| AP-4 complex subunit sigma-1, putative [Perkinsus marinus ATCC
50983]
gi|239883565|gb|EER08349.1| AP-4 complex subunit sigma-1, putative [Perkinsus marinus ATCC
50983]
Length = 148
Score = 37.0 bits (84), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 20/59 (33%), Positives = 32/59 (54%), Gaps = 17/59 (28%)
Query: 33 NKLAILKFIYLLVETAD-----------------CGIVIVEKVMDGCMAGTSKSNILTP 74
N+LA L+FI++LVET D ++ E + +GC+A T+K+N+L P
Sbjct: 78 NELAYLEFIHILVETLDKYFENVCELDIMFNLEKAHFILDEMLANGCIAETNKANVLAP 136
>gi|224002264|ref|XP_002290804.1| sigma subunit of clathrin adaptor complex AP4 [Thalassiosira
pseudonana CCMP1335]
gi|220974226|gb|EED92556.1| sigma subunit of clathrin adaptor complex AP4 [Thalassiosira
pseudonana CCMP1335]
Length = 154
Score = 37.0 bits (84), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 26/70 (37%), Positives = 37/70 (52%), Gaps = 21/70 (30%)
Query: 33 NKLAILKFIYLLVETAD------CGIVIV-----------EKVMDGCMAGTSKSNILTP- 74
N+L +L+FI+ LVET D C + I+ E VM+G + T+KSNIL P
Sbjct: 80 NELGLLEFIHALVETMDRWAGSICELDIMYQLEQVHFLLDEMVMNGYIVETNKSNILRPI 139
Query: 75 ---DKTDGEN 81
D+ G+N
Sbjct: 140 DLMDRESGKN 149
>gi|294888537|ref|XP_002772515.1| AP-4 complex subunit sigma-1, putative [Perkinsus marinus ATCC
50983]
gi|239876741|gb|EER04331.1| AP-4 complex subunit sigma-1, putative [Perkinsus marinus ATCC
50983]
Length = 140
Score = 36.6 bits (83), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 21/59 (35%), Positives = 31/59 (52%), Gaps = 17/59 (28%)
Query: 33 NKLAILKFIYLLVETAD-----------------CGIVIVEKVMDGCMAGTSKSNILTP 74
N+LA L+FI+ LVET D ++ E + +GC+A T+K+NIL P
Sbjct: 70 NELAYLEFIHTLVETLDKYFENVCELDIMFNMEKAHFILDEMLANGCIAETNKANILAP 128
>gi|291001969|ref|XP_002683551.1| predicted protein [Naegleria gruberi]
gi|284097180|gb|EFC50807.1| predicted protein [Naegleria gruberi]
Length = 143
Score = 35.4 bits (80), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 21/65 (32%), Positives = 34/65 (52%), Gaps = 17/65 (26%)
Query: 25 VVSMRTCGNKLAILKFIYLLVETAD-----------------CGIVIVEKVMDGCMAGTS 67
+V + + N+LAIL+FI+ LVET D ++ E V +GC+ T+
Sbjct: 68 IVGVDSHENELAILEFIHCLVETFDKYFENVCELDVMFNLEKAHFIVEEMVANGCITETN 127
Query: 68 KSNIL 72
++NIL
Sbjct: 128 RTNIL 132
>gi|422292687|gb|EKU19989.1| AP-4 complex subunit sigma-1 [Nannochloropsis gaditana CCMP526]
Length = 168
Score = 35.4 bits (80), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 21/61 (34%), Positives = 31/61 (50%), Gaps = 17/61 (27%)
Query: 31 CGNKLAILKFIYLLVETAD-----------------CGIVIVEKVMDGCMAGTSKSNILT 73
C N+LAIL+FI+ LVET D ++ E V++G + +K+NIL
Sbjct: 89 CENELAILEFIHALVETLDKYFESVCELDIMFNLEKAHFIVDEMVINGHIVDANKTNILK 148
Query: 74 P 74
P
Sbjct: 149 P 149
Database: nr
Posted date: Mar 3, 2013 10:45 PM
Number of letters in database: 999,999,864
Number of sequences in database: 2,912,245
Database: /local_scratch/syshi//blastdatabase/nr.01
Posted date: Mar 3, 2013 10:52 PM
Number of letters in database: 999,999,666
Number of sequences in database: 2,912,720
Database: /local_scratch/syshi//blastdatabase/nr.02
Posted date: Mar 3, 2013 10:58 PM
Number of letters in database: 999,999,938
Number of sequences in database: 3,014,250
Database: /local_scratch/syshi//blastdatabase/nr.03
Posted date: Mar 3, 2013 11:03 PM
Number of letters in database: 999,999,780
Number of sequences in database: 2,805,020
Database: /local_scratch/syshi//blastdatabase/nr.04
Posted date: Mar 3, 2013 11:08 PM
Number of letters in database: 999,999,551
Number of sequences in database: 2,816,253
Database: /local_scratch/syshi//blastdatabase/nr.05
Posted date: Mar 3, 2013 11:13 PM
Number of letters in database: 999,999,897
Number of sequences in database: 2,981,387
Database: /local_scratch/syshi//blastdatabase/nr.06
Posted date: Mar 3, 2013 11:18 PM
Number of letters in database: 999,999,649
Number of sequences in database: 2,911,476
Database: /local_scratch/syshi//blastdatabase/nr.07
Posted date: Mar 3, 2013 11:24 PM
Number of letters in database: 999,999,452
Number of sequences in database: 2,920,260
Database: /local_scratch/syshi//blastdatabase/nr.08
Posted date: Mar 3, 2013 11:25 PM
Number of letters in database: 64,230,274
Number of sequences in database: 189,558
Lambda K H
0.326 0.141 0.427
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1,277,266,219
Number of Sequences: 23463169
Number of extensions: 37841142
Number of successful extensions: 81992
Number of sequences better than 100.0: 30
Number of HSP's better than 100.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 30
Number of HSP's that attempted gapping in prelim test: 81963
Number of HSP's gapped (non-prelim): 30
length of query: 86
length of database: 8,064,228,071
effective HSP length: 56
effective length of query: 30
effective length of database: 6,750,290,607
effective search space: 202508718210
effective search space used: 202508718210
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 69 (31.2 bits)