BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 035597
         (86 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|O82201|AP4S_ARATH AP-4 complex subunit sigma OS=Arabidopsis thaliana GN=At2g19790
           PE=2 SV=1
          Length = 143

 Score = 44.7 bits (104), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 27/59 (45%), Positives = 36/59 (61%), Gaps = 17/59 (28%)

Query: 33  NKLAILKFIYLLVETAD------CGIVIV-----------EKVMDGCMAGTSKSNILTP 74
           N+LAIL+FI+LLVET D      C + I+           E VM+GC+  TSK+NIL+P
Sbjct: 77  NELAILEFIHLLVETMDKHFGNVCELDIMFHLEKAHFMLEEMVMNGCIVETSKANILSP 135


>sp|Q9Y587|AP4S1_HUMAN AP-4 complex subunit sigma-1 OS=Homo sapiens GN=AP4S1 PE=2 SV=1
          Length = 144

 Score = 32.0 bits (71), Expect = 1.0,   Method: Compositional matrix adjust.
 Identities = 19/67 (28%), Positives = 32/67 (47%), Gaps = 17/67 (25%)

Query: 25  VVSMRTCGNKLAILKFIYLLVETAD-----------------CGIVIVEKVMDGCMAGTS 67
           VV +    N++AI +FI+  VE  D                   I++ E V++GC+  T+
Sbjct: 68  VVGVNDTENEMAIYEFIHNFVEVLDEYFSRVSELDIMFNLDKVHIILDEMVLNGCIVETN 127

Query: 68  KSNILTP 74
           ++ IL P
Sbjct: 128 RARILAP 134


>sp|Q3ZBB6|AP4S1_BOVIN AP-4 complex subunit sigma-1 OS=Bos taurus GN=AP4S1 PE=2 SV=1
          Length = 144

 Score = 32.0 bits (71), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 19/67 (28%), Positives = 32/67 (47%), Gaps = 17/67 (25%)

Query: 25  VVSMRTCGNKLAILKFIYLLVETAD-----------------CGIVIVEKVMDGCMAGTS 67
           VV +    N++AI +FI+  VE  D                   I++ E V++GC+  T+
Sbjct: 68  VVGVNDTENEMAIYEFIHNFVEVLDDYFSRVSELDIMFNLDKVHIILDEMVLNGCIVETN 127

Query: 68  KSNILTP 74
           ++ IL P
Sbjct: 128 RARILAP 134


>sp|Q9WVL1|AP4S1_MOUSE AP-4 complex subunit sigma-1 OS=Mus musculus GN=Ap4s1 PE=2 SV=1
          Length = 144

 Score = 32.0 bits (71), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 19/67 (28%), Positives = 32/67 (47%), Gaps = 17/67 (25%)

Query: 25  VVSMRTCGNKLAILKFIYLLVETAD-----------------CGIVIVEKVMDGCMAGTS 67
           VV +    N++AI +FI+  VE  D                   I++ E V++GC+  T+
Sbjct: 68  VVGVNDTENEMAIYEFIHNFVEVLDGYFSRVSELDIMFNLDKVHIILDEMVLNGCIVETN 127

Query: 68  KSNILTP 74
           ++ IL P
Sbjct: 128 RARILAP 134


>sp|Q1MPA7|HCP_LAWIP Hydroxylamine reductase OS=Lawsonia intracellularis (strain
           PHE/MN1-00) GN=hcp PE=3 SV=1
          Length = 537

 Score = 30.8 bits (68), Expect = 2.7,   Method: Composition-based stats.
 Identities = 13/39 (33%), Positives = 20/39 (51%)

Query: 14  KPLKLHFEFPRVVSMRTCGNKLAILKFIYLLVETADCGI 52
           K L +    PR++ M  C +  A L+ +  L E  DCG+
Sbjct: 429 KDLGMIGSLPRLIDMGQCNDAYAALQVVTALAEILDCGV 467


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.326    0.141    0.427 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 30,531,068
Number of Sequences: 539616
Number of extensions: 928323
Number of successful extensions: 2279
Number of sequences better than 100.0: 5
Number of HSP's better than 100.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 2276
Number of HSP's gapped (non-prelim): 5
length of query: 86
length of database: 191,569,459
effective HSP length: 56
effective length of query: 30
effective length of database: 161,350,963
effective search space: 4840528890
effective search space used: 4840528890
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 55 (25.8 bits)