Query 035597
Match_columns 86
No_of_seqs 100 out of 374
Neff 3.7
Searched_HMMs 29240
Date Mon Mar 25 06:47:22 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/035597.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/035597hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3tjz_C Coatomer subunit zeta-1 99.8 4.1E-19 1.4E-23 124.6 5.4 67 14-80 63-151 (153)
2 2vgl_S AP-2 complex subunit si 99.7 2.1E-18 7.2E-23 117.7 5.3 67 14-80 53-140 (142)
3 1w63_Q Adapter-related protein 99.7 1.2E-17 4.1E-22 116.5 5.4 67 14-80 53-140 (158)
4 2vgl_M AP-2 complex subunit MU 99.5 6.5E-14 2.2E-18 109.3 6.2 63 14-76 51-134 (435)
5 1w63_M Adaptor-related protein 99.5 5.4E-14 1.8E-18 109.5 5.3 65 14-78 53-138 (423)
6 1yb3_A Hypothetical protein; s 40.1 14 0.00049 26.8 2.0 58 22-82 83-144 (175)
7 2r17_C Vacuolar protein sortin 25.1 30 0.001 26.4 1.6 16 37-52 231-246 (298)
8 3cue_C Transport protein parti 16.9 2.2E+02 0.0074 19.2 4.5 34 13-46 72-113 (159)
9 3doe_B ADP-ribosylation factor 15.0 98 0.0033 21.9 2.4 24 29-52 56-79 (165)
10 3o0l_A Uncharacterized protein 12.6 1.7E+02 0.0057 18.8 2.9 17 9-25 47-63 (112)
No 1
>3tjz_C Coatomer subunit zeta-1; protein trafficking, golgi membrane, protein transport-prote binding complex; HET: GNP; 2.90A {Bos taurus} PDB: 2hf6_A
Probab=99.76 E-value=4.1e-19 Score=124.64 Aligned_cols=67 Identities=15% Similarity=0.209 Sum_probs=60.3
Q ss_pred CCceeEEE----eeeEEEEcCCCchhhhHHHHHHHHHHhhhhh------------------hhheeecceeeeeechhhh
Q 035597 14 KPLKLHFE----FPRVVSMRTCGNKLAILKFIYLLVETADCGI------------------VIVEKVMDGCMAGTSKSNI 71 (86)
Q Consensus 14 ~~~~~~y~----l~fi~~VD~~dNELa~LE~IH~fVE~LDkyF------------------ILDEmil~Gev~ETsk~~I 71 (86)
.+.+++|| |+|++++|.++|||+++|+||.|||+||+|| +||||+.+|.++|||++.|
T Consensus 63 ~~~~~vy~~~~~Lyfv~~~~~~eNel~ile~L~~~ve~l~~yf~~~v~E~~I~~Nf~~vy~lLDE~id~G~~~eT~~~~I 142 (153)
T 3tjz_C 63 EGLTVVYKSSIDLYFYVIGSSYENELMLMTVLNCLFDSLSQMLRKNVEKRALLENMEGLFLAVDEIVDGGVILESDPQQV 142 (153)
T ss_dssp TTEEEEEEECSSCEEEEEEETTSCHHHHHHHHHHHHHHHHHHHTSCCCHHHHHHTHHHHHHHHHHHEETTEECCCCHHHH
T ss_pred CCEEEEEEEECCEEEEEEEcCCCChHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHcCCEeeeCCHHHH
Confidence 46899999 9999999999999999999999999999999 9999999999999999999
Q ss_pred cccchhcch
Q 035597 72 LTPDKTDGE 80 (86)
Q Consensus 72 L~~i~~~~~ 80 (86)
++++...+.
T Consensus 143 ~~~v~~~~~ 151 (153)
T 3tjz_C 143 VHRVALRGE 151 (153)
T ss_dssp HHTC-----
T ss_pred HHHHhcccC
Confidence 999986543
No 2
>2vgl_S AP-2 complex subunit sigma-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Mus musculus} SCOP: i.23.1.1 PDB: 2jkt_I 2jkr_I* 2xa7_S
Probab=99.73 E-value=2.1e-18 Score=117.65 Aligned_cols=67 Identities=21% Similarity=0.224 Sum_probs=63.9
Q ss_pred CCceeEEE----eeeEEEEcCCCchhhhHHHHHHHHHHhhhhh-----------------hhheeecceeeeeechhhhc
Q 035597 14 KPLKLHFE----FPRVVSMRTCGNKLAILKFIYLLVETADCGI-----------------VIVEKVMDGCMAGTSKSNIL 72 (86)
Q Consensus 14 ~~~~~~y~----l~fi~~VD~~dNELa~LE~IH~fVE~LDkyF-----------------ILDEmil~Gev~ETsk~~IL 72 (86)
++.+++|+ |+|+++++.++|||+++|+||.|||+||+|| +||||+.+|.++|||+++|+
T Consensus 53 ~~~~~vy~~~~~Lyfv~~~~~~~N~l~~le~L~~~ve~l~~yf~~v~E~~I~~Nf~~vy~lLDE~id~G~~~et~~~~il 132 (142)
T 2vgl_S 53 RNFKIIYRRYAGLYFCICVDVNDNNLAYLEAIHNFVEVLNEYFHNVCELDLVFNFYKVYTVVDEMFLAGEIRETSQTKVL 132 (142)
T ss_dssp TTEEEEEEEETTEEEEEEECTTSCHHHHHHHHHHHHHHHHHHTTSCCHHHHHHTHHHHHHHHHHHEETTEECCCCHHHHH
T ss_pred CCEEEEEEEECCEEEEEEeCCCCCHHHHHHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHHhCCEEEEcCHHHHH
Confidence 46899999 9999999999999999999999999999999 99999999999999999999
Q ss_pred ccchhcch
Q 035597 73 TPDKTDGE 80 (86)
Q Consensus 73 ~~i~~~~~ 80 (86)
+++.++++
T Consensus 133 ~~~~~~~~ 140 (142)
T 2vgl_S 133 KQLLMLQS 140 (142)
T ss_dssp HHHHHHHH
T ss_pred HHHHhhhc
Confidence 99988775
No 3
>1w63_Q Adapter-related protein complex 1 sigma 1A subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1
Probab=99.70 E-value=1.2e-17 Score=116.49 Aligned_cols=67 Identities=24% Similarity=0.273 Sum_probs=63.3
Q ss_pred CCceeEEE----eeeEEEEcCCCchhhhHHHHHHHHHHhhhhh-----------------hhheeecceeeeeechhhhc
Q 035597 14 KPLKLHFE----FPRVVSMRTCGNKLAILKFIYLLVETADCGI-----------------VIVEKVMDGCMAGTSKSNIL 72 (86)
Q Consensus 14 ~~~~~~y~----l~fi~~VD~~dNELa~LE~IH~fVE~LDkyF-----------------ILDEmil~Gev~ETsk~~IL 72 (86)
++.+++|| |||++++|.++|||.++|+||.|||+||+|| +||||+.+|.++||+++.|.
T Consensus 53 ~~~~~vy~~~~~Lyfv~~~~~~~Nel~~le~L~~~vevl~~yf~~v~E~~I~~Nf~~vy~lLDE~id~G~~~eT~~~~l~ 132 (158)
T 1w63_Q 53 RDLKVVYKRYASLYFCCAIEGQDNELITLELIHRYVELLDKYFGSVCELDIIFNFEKAYFILDEFLMGGDVQDTSKKSVL 132 (158)
T ss_dssp TTEEEEEEEETTEEEEEEECSSSCHHHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHTTEETTEESCCCHHHHH
T ss_pred CCEEEEEEEECCEEEEEEecCCCCHHHHHHHHHHHHHHHHHHHccCCHHHHHHhHHHHHHHHHHHHhCCEEEecCHHHHH
Confidence 46899999 9999999999999999999999999999999 99999999999999999999
Q ss_pred ccchhcch
Q 035597 73 TPDKTDGE 80 (86)
Q Consensus 73 ~~i~~~~~ 80 (86)
+.+...+.
T Consensus 133 ~~I~~~~~ 140 (158)
T 1w63_Q 133 KAIEQADL 140 (158)
T ss_dssp HHHHHHHH
T ss_pred HHHhcchh
Confidence 99986654
No 4
>2vgl_M AP-2 complex subunit MU-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Rattus norvegicus} PDB: 2jkr_M 2jkt_M 2bp5_M* 2xa7_M
Probab=99.46 E-value=6.5e-14 Score=109.34 Aligned_cols=63 Identities=10% Similarity=0.064 Sum_probs=57.7
Q ss_pred CCceeEEE----eeeEEEEcCCCchhhhHHHHHHHHHHhhhhh-----------------hhheeecceeeeeechhhhc
Q 035597 14 KPLKLHFE----FPRVVSMRTCGNKLAILKFIYLLVETADCGI-----------------VIVEKVMDGCMAGTSKSNIL 72 (86)
Q Consensus 14 ~~~~~~y~----l~fi~~VD~~dNELa~LE~IH~fVE~LDkyF-----------------ILDEmil~Gev~ETsk~~IL 72 (86)
++.+++|+ |||+++++.++|||.++|+||.|||+||+|| +||||+.+|.++||+++.+.
T Consensus 51 ~~~~~vy~~~~~Lyfv~~~~~~~n~l~~le~L~~~v~vl~~yf~~v~E~~I~~Nf~~vy~lLDE~id~G~~~~t~~~~l~ 130 (435)
T 2vgl_M 51 ARTSFFHVKRSNIWLAAVTKQNVNAAMVFEFLYKMCDVMAAYFGKISEENIKNNFVLIYELLDEILDFGYPQNSETGALK 130 (435)
T ss_dssp TTEEEEEEEETTEEEEEEESSCCCHHHHHHHHHHHHHHHHHHHSSCCHHHHHHTHHHHHHHHHHHEETTEECCCCHHHHG
T ss_pred CCEEEEEEEECCEEEEEEecCCCCHHHHHHHHHHHHHHHHHHHhccCHHHHHHhHHHHHHHHHHHhcCCEEEecCHHHHH
Confidence 46799999 9999999999999999999999999999999 99999999999999998655
Q ss_pred ccch
Q 035597 73 TPDK 76 (86)
Q Consensus 73 ~~i~ 76 (86)
+.+.
T Consensus 131 ~~i~ 134 (435)
T 2vgl_M 131 TFIT 134 (435)
T ss_dssp GGCC
T ss_pred HHhc
Confidence 5443
No 5
>1w63_M Adaptor-related protein complex 1, MU 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1
Probab=99.45 E-value=5.4e-14 Score=109.46 Aligned_cols=65 Identities=11% Similarity=0.077 Sum_probs=61.0
Q ss_pred CCceeEEE----eeeEEEEcCCCchhhhHHHHHHHHHHhhhhh-----------------hhheeecceeeeeechhhhc
Q 035597 14 KPLKLHFE----FPRVVSMRTCGNKLAILKFIYLLVETADCGI-----------------VIVEKVMDGCMAGTSKSNIL 72 (86)
Q Consensus 14 ~~~~~~y~----l~fi~~VD~~dNELa~LE~IH~fVE~LDkyF-----------------ILDEmil~Gev~ETsk~~IL 72 (86)
++.+++|+ |||+++++.++|||.++|+||.|||+||+|| +||||+.+|.++||+++.|.
T Consensus 53 ~~~~~vy~~~~~Lyfv~~~~~~~n~l~~le~L~~~v~~l~~yf~~v~E~~I~~Nf~~vy~lLDE~id~G~~~~t~~~~l~ 132 (423)
T 1w63_M 53 GGVRFMWIKHNNLYLVATSKKNACVSLVFSFLYKVVQVFSEYFKELEEESIRDNFVIIYELLDELMDFGYPQTTDSKILQ 132 (423)
T ss_dssp TTEEEEEEEETTEEEEEEESSCCCTHHHHHHHHHHHHHHHHHSSCCSHHHHHHHHHHHHHHHHHHCSSSSCCCCCSTTTT
T ss_pred CCEEEEEEEECCEEEEEEecCCCCHHHHHHHHHHHHHHHHHHHhhcCHHHHHHhHHHHHHHHHHHhcCCEEeecCHHHHH
Confidence 46899999 9999999999999999999999999999999 99999999999999999988
Q ss_pred ccchhc
Q 035597 73 TPDKTD 78 (86)
Q Consensus 73 ~~i~~~ 78 (86)
+.+...
T Consensus 133 ~~i~~~ 138 (423)
T 1w63_M 133 EFITQE 138 (423)
T ss_dssp TTCCSC
T ss_pred HhhcCC
Confidence 877654
No 6
>1yb3_A Hypothetical protein; structural genomics, protein structure initiative, PSI; 1.60A {Pyrococcus furiosus} SCOP: d.296.1.2
Probab=40.07 E-value=14 Score=26.82 Aligned_cols=58 Identities=14% Similarity=0.171 Sum_probs=38.9
Q ss_pred eeeEEEEcCCCchhhhHHHHHHHHHHhhhhhhh-heeecceeeeee---chhhhcccchhcchhh
Q 035597 22 FPRVVSMRTCGNKLAILKFIYLLVETADCGIVI-VEKVMDGCMAGT---SKSNILTPDKTDGENI 82 (86)
Q Consensus 22 l~fi~~VD~~dNELa~LE~IH~fVE~LDkyFIL-DEmil~Gev~ET---sk~~IL~~i~~~~~~~ 82 (86)
+||++++.. ++|. .+++-.|+|.++|+||- -|-.+.----++ |.++|.++|..++|.+
T Consensus 83 ~yfv~~v~K--e~ls-~~Fi~~fl~~f~k~~IYG~ENFL~DfyN~~~p~~~deI~~~I~~S~Ee~ 144 (175)
T 1yb3_A 83 FYFVFAFPK--EELS-KEFIEDVIRAFEKLFIYGAENFLEDFYNFEHPISGDEVWDRIVNSDEEM 144 (175)
T ss_dssp EEEEEEEEG--GGCC-HHHHHHHHHHCSEEEEESSCTTTCEEEETTSCCCHHHHHHHHHTSSCSE
T ss_pred EEEEEEecH--HHHh-HHHHHHHHHhcchhhhhhHHHHHHHhccccCCCCHHHHHHHHhcCccce
Confidence 899999998 4454 99999999999999921 122222222233 4456778887777654
No 7
>2r17_C Vacuolar protein sorting-associated protein 35; protein transport, membrane, phosphorylation; 2.80A {Homo sapiens}
Probab=25.14 E-value=30 Score=26.38 Aligned_cols=16 Identities=19% Similarity=0.063 Sum_probs=13.9
Q ss_pred hHHHHHHHHHHhhhhh
Q 035597 37 ILKFIYLLVETADCGI 52 (86)
Q Consensus 37 ~LE~IH~fVE~LDkyF 52 (86)
.-..+++|||+||+|.
T Consensus 231 ~~~~v~LfveILn~yl 246 (298)
T 2r17_C 231 PSLQVQLFIEILNRYI 246 (298)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHH
Confidence 3467999999999998
No 8
>3cue_C Transport protein particle 18 kDa subunit; membrane traffic, GEF, tethering complex, RAB activation, GU nucleotide exchange factor; HET: PLM; 3.70A {Saccharomyces cerevisiae}
Probab=16.88 E-value=2.2e+02 Score=19.19 Aligned_cols=34 Identities=18% Similarity=0.263 Sum_probs=25.8
Q ss_pred CCCceeEEE-----eeeEEEEcCCCchh-hhHHHHH--HHHH
Q 035597 13 PKPLKLHFE-----FPRVVSMRTCGNKL-AILKFIY--LLVE 46 (86)
Q Consensus 13 ~~~~~~~y~-----l~fi~~VD~~dNEL-a~LE~IH--~fVE 46 (86)
+...|++|= +=|++..|..++++ .+|--|| .||+
T Consensus 72 T~~ykl~~~eT~TgiKFvl~td~~~~~i~~~l~~iy~~lYv~ 113 (159)
T 3cue_C 72 TGKYRVHTYCTASGLWFVLLSDFKQQSYTQVLQYIYSHIYVK 113 (159)
T ss_dssp CSSCBEEEECCSSCCEEEEECCSSSSCTHHHHHHHHHHHHHH
T ss_pred eCCEEEEEEEeCCCCEEEEEeCCCcchHHHHHHHHHHHHHHH
Confidence 344555554 78999999888877 7778888 7888
No 9
>3doe_B ADP-ribosylation factor-like protein 2-binding protein; binder of ARL2, small GTPase, effector, complex structure, GTP-binding, lipoprotein; HET: GTP; 2.25A {Homo sapiens} PDB: 3dof_B* 2k9a_A 2k0s_A
Probab=15.01 E-value=98 Score=21.91 Aligned_cols=24 Identities=21% Similarity=0.083 Sum_probs=22.2
Q ss_pred cCCCchhhhHHHHHHHHHHhhhhh
Q 035597 29 RTCGNKLAILKFIYLLVETADCGI 52 (86)
Q Consensus 29 D~~dNELa~LE~IH~fVE~LDkyF 52 (86)
|.+||.|..-++-+-|.+..+++-
T Consensus 56 d~EENKLeYT~I~~eY~~LVE~~L 79 (165)
T 3doe_B 56 DTEENKLIYTPIFNEYISLVEKYI 79 (165)
T ss_dssp SSSSBCTTHHHHHHHHHHHHHHHH
T ss_pred CccccchHHHHHHHHHHHHHHHHH
Confidence 678999999999999999999987
No 10
>3o0l_A Uncharacterized protein; PFAM DUF1425 family member, structural genomics, joint cente structural genomics, JCSG, protein structure initiative; HET: MSE; 1.81A {Shewanella loihica}
Probab=12.64 E-value=1.7e+02 Score=18.81 Aligned_cols=17 Identities=29% Similarity=0.440 Sum_probs=13.1
Q ss_pred eccCCCCceeEEEeeeE
Q 035597 9 RVWSPKPLKLHFEFPRV 25 (86)
Q Consensus 9 ~~~~~~~~~~~y~l~fi 25 (86)
+.=+..|.+++|||+..
T Consensus 47 ~N~~~~~~~l~Yrf~Wy 63 (112)
T 3o0l_A 47 ISKSPKDQRLQYKFTWY 63 (112)
T ss_dssp EECSSSCEEEEEEEEEE
T ss_pred EeCCCCCEEEEEEEEEE
Confidence 45577899999997763
Done!