Query 035598
Match_columns 298
No_of_seqs 180 out of 1577
Neff 7.4
Searched_HMMs 46136
Date Fri Mar 29 04:23:08 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/035598.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/035598hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 cd02877 GH18_hevamine_XipI_cla 100.0 1.1E-65 2.3E-70 471.4 27.1 271 26-296 1-280 (280)
2 KOG4701 Chitinase [Cell wall/m 100.0 1.6E-64 3.5E-69 463.1 22.0 294 1-294 1-309 (568)
3 cd02871 GH18_chitinase_D-like 100.0 1.4E-48 3E-53 364.5 25.0 255 26-296 1-311 (312)
4 cd06546 GH18_CTS3_chitinase GH 100.0 1.5E-47 3.2E-52 348.0 23.4 234 27-284 1-255 (256)
5 cd06545 GH18_3CO4_chitinase Th 100.0 2.6E-38 5.7E-43 287.0 20.6 235 28-290 1-247 (253)
6 cd02879 GH18_plant_chitinase_c 100.0 1.7E-36 3.7E-41 281.5 21.8 242 26-289 3-297 (299)
7 cd06544 GH18_narbonin Narbonin 100.0 1.3E-36 2.9E-41 275.3 20.2 232 30-285 4-253 (253)
8 COG3469 Chitinase [Carbohydrat 100.0 5.3E-36 1.2E-40 262.9 16.3 241 25-286 25-308 (332)
9 cd06548 GH18_chitinase The GH1 100.0 2.1E-34 4.6E-39 270.0 20.2 245 28-285 1-322 (322)
10 COG3325 ChiA Chitinase [Carboh 100.0 6.2E-34 1.4E-38 267.3 18.0 214 23-247 35-314 (441)
11 cd02878 GH18_zymocin_alpha Zym 100.0 2.5E-33 5.3E-38 265.2 19.2 195 27-247 1-242 (345)
12 cd02873 GH18_IDGF The IDGF's ( 100.0 2.7E-31 5.8E-36 256.7 22.6 204 27-247 1-275 (413)
13 cd02872 GH18_chitolectin_chito 100.0 1.9E-31 4.2E-36 253.5 19.2 203 28-247 1-244 (362)
14 cd00598 GH18_chitinase-like Th 100.0 2.5E-31 5.3E-36 233.3 16.6 195 28-285 1-210 (210)
15 smart00636 Glyco_18 Glycosyl h 100.0 2.8E-30 6.2E-35 242.7 20.5 202 27-247 1-237 (334)
16 PF00704 Glyco_hydro_18: Glyco 100.0 4.3E-31 9.4E-36 247.7 8.7 207 26-247 1-245 (343)
17 KOG2806 Chitinase [Carbohydrat 100.0 3.3E-28 7.1E-33 236.2 17.7 201 27-247 59-298 (432)
18 cd02876 GH18_SI-CLP Stabilin-1 100.0 2E-27 4.2E-32 222.5 17.7 201 27-247 4-230 (318)
19 cd06542 GH18_EndoS-like Endo-b 99.9 6.4E-27 1.4E-31 212.3 17.1 223 27-287 2-243 (255)
20 cd02874 GH18_CFLE_spore_hydrol 99.9 1.4E-25 2.9E-30 209.5 22.5 194 26-247 2-219 (313)
21 cd02875 GH18_chitobiase Chitob 99.9 9.8E-25 2.1E-29 207.4 21.3 147 87-247 68-234 (358)
22 cd06549 GH18_trifunctional GH1 99.9 1.3E-21 2.9E-26 181.7 19.4 194 28-247 2-211 (298)
23 cd06543 GH18_PF-ChiA-like PF-C 99.9 1.5E-21 3.3E-26 180.6 16.7 230 38-288 14-268 (294)
24 COG3858 Predicted glycosyl hyd 99.1 1.8E-09 3.9E-14 102.4 13.0 149 87-247 151-323 (423)
25 PF02638 DUF187: Glycosyl hydr 97.5 0.00038 8.3E-09 65.3 8.7 154 82-248 69-299 (311)
26 cd06547 GH85_ENGase Endo-beta- 96.8 0.001 2.2E-08 63.2 3.8 75 87-171 50-136 (339)
27 KOG2091 Predicted member of gl 96.2 0.091 2E-06 48.9 11.8 175 87-281 131-334 (392)
28 PF03644 Glyco_hydro_85: Glyco 94.8 0.017 3.6E-07 54.3 2.2 83 87-179 46-140 (311)
29 PF11340 DUF3142: Protein of u 92.5 1.3 2.9E-05 38.2 9.6 93 142-247 41-138 (181)
30 TIGR01370 cysRS possible cyste 91.8 0.53 1.2E-05 44.3 7.0 22 86-107 84-107 (315)
31 PF13200 DUF4015: Putative gly 88.4 9.8 0.00021 35.9 12.3 142 140-284 134-314 (316)
32 TIGR02402 trehalose_TreZ malto 88.1 1.8 3.9E-05 43.8 7.7 62 80-151 157-245 (542)
33 PLN02960 alpha-amylase 87.7 4.7 0.0001 43.0 10.5 24 80-103 463-486 (897)
34 PRK05402 glycogen branching en 86.3 8.1 0.00018 40.5 11.6 60 43-103 273-335 (726)
35 TIGR01515 branching_enzym alph 86.2 7.9 0.00017 39.8 11.3 24 80-103 203-226 (613)
36 PRK12568 glycogen branching en 86.1 4.8 0.0001 42.2 9.6 61 42-103 276-339 (730)
37 PRK12313 glycogen branching en 85.3 8.4 0.00018 39.7 11.0 60 43-103 178-240 (633)
38 cd06591 GH31_xylosidase_XylS X 82.8 4.6 0.0001 37.9 7.3 64 81-154 64-160 (319)
39 PRK09441 cytoplasmic alpha-amy 82.2 8.7 0.00019 38.1 9.3 24 80-103 78-101 (479)
40 PRK14706 glycogen branching en 82.2 8.2 0.00018 39.9 9.3 62 41-103 173-237 (639)
41 cd02810 DHOD_DHPD_FMN Dihydroo 81.7 9 0.00019 35.1 8.7 100 83-206 83-196 (289)
42 COG1649 Uncharacterized protei 81.7 2.1 4.6E-05 41.7 4.6 154 81-248 113-344 (418)
43 TIGR02104 pulA_typeI pullulana 81.7 5.5 0.00012 40.9 7.8 21 83-103 229-249 (605)
44 TIGR02103 pullul_strch alpha-1 80.0 7.9 0.00017 41.6 8.5 77 83-169 404-516 (898)
45 PRK03705 glycogen debranching 79.9 2.7 5.8E-05 43.6 4.9 21 83-103 242-262 (658)
46 TIGR02102 pullulan_Gpos pullul 79.3 8.1 0.00017 42.5 8.4 77 83-169 555-662 (1111)
47 PRK07259 dihydroorotate dehydr 79.2 6.5 0.00014 36.4 6.9 64 85-169 79-155 (301)
48 cd04740 DHOD_1B_like Dihydroor 77.7 6.6 0.00014 36.2 6.4 65 84-169 76-152 (296)
49 TIGR02100 glgX_debranch glycog 77.6 3.8 8.2E-05 42.7 5.2 22 82-103 244-265 (688)
50 PRK14705 glycogen branching en 77.2 4.7 0.0001 44.6 6.0 62 41-103 771-835 (1224)
51 cd06602 GH31_MGAM_SI_GAA This 76.2 8.6 0.00019 36.5 6.9 64 82-155 63-167 (339)
52 PLN02447 1,4-alpha-glucan-bran 75.9 8.3 0.00018 40.6 7.1 23 81-103 298-320 (758)
53 PRK10785 maltodextrin glucosid 75.2 18 0.00039 37.1 9.3 24 80-103 223-246 (598)
54 PF14871 GHL6: Hypothetical gl 74.0 8.9 0.00019 31.3 5.5 21 83-103 44-64 (132)
55 cd06523 GH25_PlyB-like PlyB is 73.0 17 0.00036 31.0 7.3 68 83-169 39-113 (177)
56 cd02932 OYE_YqiM_FMN Old yello 72.9 22 0.00047 33.5 8.7 22 82-103 76-97 (336)
57 TIGR00736 nifR3_rel_arch TIM-b 71.9 67 0.0014 28.9 11.1 95 84-206 56-168 (231)
58 cd06417 GH25_LysA-like LysA is 69.8 15 0.00032 31.8 6.3 65 83-169 36-111 (195)
59 cd02931 ER_like_FMN Enoate red 69.4 29 0.00064 33.4 8.9 21 83-103 83-103 (382)
60 PF14883 GHL13: Hypothetical g 67.5 1.1E+02 0.0023 28.6 13.6 210 41-270 22-285 (294)
61 cd06600 GH31_MGAM-like This fa 66.7 22 0.00048 33.3 7.3 65 81-155 62-162 (317)
62 cd04734 OYE_like_3_FMN Old yel 65.8 38 0.00082 32.1 8.7 22 83-104 77-98 (343)
63 cd02930 DCR_FMN 2,4-dienoyl-Co 65.7 40 0.00088 32.0 8.9 21 83-103 77-97 (353)
64 PRK02261 methylaspartate mutas 63.7 19 0.00041 29.6 5.4 64 25-107 30-94 (137)
65 cd06525 GH25_Lyc-like Lyc mura 63.3 23 0.00049 30.2 6.2 65 83-169 38-115 (184)
66 cd06522 GH25_AtlA-like AtlA is 61.7 23 0.0005 30.5 6.0 65 83-169 42-121 (192)
67 cd06592 GH31_glucosidase_KIAA1 61.3 18 0.0004 33.6 5.6 64 81-154 68-166 (303)
68 cd06599 GH31_glycosidase_Aec37 61.1 23 0.00051 33.1 6.3 23 81-103 71-93 (317)
69 cd06598 GH31_transferase_CtsZ 61.0 29 0.00062 32.5 6.9 63 81-154 68-165 (317)
70 cd02801 DUS_like_FMN Dihydrour 60.5 14 0.00031 32.3 4.6 56 93-169 51-121 (231)
71 PRK10550 tRNA-dihydrouridine s 60.4 32 0.00069 32.3 7.0 88 96-206 62-168 (312)
72 cd04747 OYE_like_5_FMN Old yel 59.9 57 0.0012 31.3 8.8 22 82-103 77-98 (361)
73 cd04733 OYE_like_2_FMN Old yel 58.3 59 0.0013 30.6 8.5 22 82-103 81-102 (338)
74 cd06597 GH31_transferase_CtsY 57.8 23 0.0005 33.6 5.7 22 81-102 83-104 (340)
75 cd06589 GH31 The enzymes of gl 56.5 32 0.0007 31.2 6.3 55 81-155 64-118 (265)
76 PLN00196 alpha-amylase; Provis 56.5 40 0.00087 33.1 7.2 24 80-103 89-112 (428)
77 cd04739 DHOD_like Dihydroorota 56.0 44 0.00096 31.4 7.2 77 84-183 86-173 (325)
78 cd02911 arch_FMN Archeal FMN-b 55.2 34 0.00073 30.6 6.0 96 84-206 60-172 (233)
79 cd06412 GH25_CH-type CH-type ( 54.0 29 0.00063 30.0 5.3 17 83-99 39-55 (199)
80 PLN03244 alpha-amylase; Provis 52.5 20 0.00044 37.9 4.6 23 81-103 439-461 (872)
81 PF03537 Glyco_hydro_114: Glyc 52.1 12 0.00026 27.3 2.2 22 86-107 39-62 (74)
82 PLN02877 alpha-amylase/limit d 51.7 70 0.0015 34.8 8.5 20 84-103 467-486 (970)
83 COG0036 Rpe Pentose-5-phosphat 51.0 67 0.0014 28.7 7.0 63 140-211 81-143 (220)
84 PRK11815 tRNA-dihydrouridine s 50.9 21 0.00045 33.8 4.2 55 94-169 62-131 (333)
85 cd04735 OYE_like_4_FMN Old yel 50.7 87 0.0019 29.7 8.4 22 82-103 77-98 (353)
86 PRK07565 dihydroorotate dehydr 50.6 1.6E+02 0.0035 27.6 10.2 99 83-206 87-197 (334)
87 PF05984 Cytomega_UL20A: Cytom 50.2 17 0.00036 27.4 2.6 24 1-24 1-24 (100)
88 cd06415 GH25_Cpl1-like Cpl-1 l 49.6 67 0.0015 27.7 6.9 17 83-99 38-54 (196)
89 cd06595 GH31_xylosidase_XylS-l 49.5 44 0.00095 30.8 6.0 23 81-103 72-94 (292)
90 COG1891 Uncharacterized protei 49.4 1.2E+02 0.0025 26.5 7.9 58 150-211 25-92 (235)
91 cd04738 DHOD_2_like Dihydrooro 48.8 51 0.0011 31.0 6.4 107 85-206 117-236 (327)
92 PF00150 Cellulase: Cellulase 48.1 86 0.0019 27.7 7.6 185 82-284 61-279 (281)
93 TIGR00742 yjbN tRNA dihydrouri 48.1 25 0.00054 33.1 4.2 56 94-170 52-122 (318)
94 PF01120 Alpha_L_fucos: Alpha- 47.6 95 0.0021 29.4 8.1 88 83-179 138-242 (346)
95 cd02929 TMADH_HD_FMN Trimethyl 47.3 1.2E+02 0.0026 29.1 8.8 22 82-103 82-103 (370)
96 TIGR00737 nifR3_yhdG putative 46.4 35 0.00076 31.9 4.9 41 94-155 60-100 (319)
97 TIGR01037 pyrD_sub1_fam dihydr 46.1 1.6E+02 0.0034 27.1 9.1 96 86-206 79-189 (300)
98 PF01183 Glyco_hydro_25: Glyco 45.6 78 0.0017 26.6 6.6 17 83-99 36-52 (181)
99 PF04476 DUF556: Protein of un 45.3 2.3E+02 0.0051 25.6 11.0 127 142-285 19-156 (235)
100 cd06419 GH25_muramidase_2 Unch 45.3 69 0.0015 27.7 6.2 17 83-99 46-62 (190)
101 PRK02227 hypothetical protein; 44.6 2.4E+02 0.0053 25.5 10.5 121 143-280 20-151 (238)
102 cd02803 OYE_like_FMN_family Ol 44.4 47 0.001 30.8 5.4 22 82-103 76-97 (327)
103 cd06604 GH31_glucosidase_II_Ma 43.7 75 0.0016 29.9 6.7 23 81-103 62-84 (339)
104 cd02940 DHPD_FMN Dihydropyrimi 43.7 1.1E+02 0.0024 28.2 7.8 76 86-183 87-178 (299)
105 cd02069 methionine_synthase_B1 43.3 15 0.00034 32.4 1.9 25 83-107 154-178 (213)
106 PF00834 Ribul_P_3_epim: Ribul 42.7 57 0.0012 28.5 5.4 63 140-211 77-139 (201)
107 cd00599 GH25_muramidase Endo-N 42.6 80 0.0017 26.6 6.2 17 83-99 38-54 (186)
108 PF00128 Alpha-amylase: Alpha 41.8 22 0.00047 31.9 2.7 24 80-103 49-72 (316)
109 PRK05286 dihydroorotate dehydr 40.6 2.7E+02 0.0058 26.4 10.0 106 85-206 127-245 (344)
110 cd06414 GH25_LytC-like The Lyt 39.6 1E+02 0.0022 26.4 6.4 17 83-99 42-58 (191)
111 cd06601 GH31_lyase_GLase GLase 39.0 73 0.0016 30.2 5.8 63 81-154 62-134 (332)
112 cd04741 DHOD_1A_like Dihydroor 37.9 1.2E+02 0.0025 28.1 6.9 77 84-184 75-168 (294)
113 PRK00109 Holliday junction res 37.8 94 0.002 25.4 5.6 41 226-270 45-86 (138)
114 cd06524 GH25_YegX-like YegX is 37.2 1.1E+02 0.0023 26.2 6.2 17 83-99 42-58 (194)
115 cd06593 GH31_xylosidase_YicI Y 36.9 75 0.0016 29.4 5.5 23 81-103 64-86 (308)
116 PF01055 Glyco_hydro_31: Glyco 36.3 1.2E+02 0.0025 29.6 7.0 64 81-154 81-181 (441)
117 smart00642 Aamy Alpha-amylase 36.1 38 0.00083 28.6 3.1 59 44-103 27-90 (166)
118 PRK09936 hypothetical protein; 36.1 57 0.0012 30.4 4.4 84 4-103 2-92 (296)
119 cd06413 GH25_muramidase_1 Unch 35.6 87 0.0019 26.8 5.3 17 83-99 41-57 (191)
120 PLN03231 putative alpha-galact 35.5 2.9E+02 0.0064 26.5 9.3 44 137-183 170-217 (357)
121 TIGR00250 RNAse_H_YqgF RNAse H 35.0 1.3E+02 0.0028 24.4 5.9 24 225-248 38-61 (130)
122 PRK03170 dihydrodipicolinate s 34.3 3.6E+02 0.0079 24.5 9.6 113 82-212 21-137 (292)
123 PRK08318 dihydropyrimidine deh 33.8 1.6E+02 0.0034 28.6 7.4 66 96-183 99-178 (420)
124 PLN02229 alpha-galactosidase 33.6 2.4E+02 0.0051 27.9 8.4 77 84-182 129-216 (427)
125 cd06603 GH31_GANC_GANAB_alpha 33.5 1.7E+02 0.0036 27.6 7.4 23 81-103 62-84 (339)
126 PF07172 GRP: Glycine rich pro 32.8 27 0.00057 27.0 1.4 9 1-9 1-9 (95)
127 PF10566 Glyco_hydro_97: Glyco 32.4 42 0.0009 31.0 2.9 67 82-165 72-141 (273)
128 PRK02506 dihydroorotate dehydr 32.3 2.9E+02 0.0064 25.7 8.7 79 83-184 77-168 (310)
129 PRK14510 putative bifunctional 32.1 74 0.0016 35.6 5.3 23 81-103 245-267 (1221)
130 COG1979 Uncharacterized oxidor 31.6 43 0.00093 31.9 2.8 27 81-107 70-96 (384)
131 PF14587 Glyco_hydr_30_2: O-Gl 31.6 64 0.0014 31.3 4.1 74 87-170 108-213 (384)
132 COG0296 GlgB 1,4-alpha-glucan 31.0 1.2E+02 0.0027 31.3 6.3 24 80-103 211-234 (628)
133 PLN02495 oxidoreductase, actin 30.7 2E+02 0.0044 27.9 7.4 79 84-184 99-193 (385)
134 KOG2331 Predicted glycosylhydr 29.3 72 0.0016 31.4 4.0 70 91-170 119-198 (526)
135 PRK03620 5-dehydro-4-deoxygluc 29.2 3.1E+02 0.0066 25.4 8.2 113 82-212 27-142 (303)
136 PRK09432 metF 5,10-methylenete 29.1 2.6E+02 0.0056 26.0 7.6 25 83-107 97-121 (296)
137 cd02067 B12-binding B12 bindin 29.0 47 0.001 25.8 2.4 61 28-107 29-90 (119)
138 cd02071 MM_CoA_mut_B12_BD meth 28.9 37 0.0008 26.9 1.7 62 26-106 27-89 (122)
139 TIGR02370 pyl_corrinoid methyl 28.5 42 0.00091 29.1 2.2 25 83-107 150-176 (197)
140 TIGR02313 HpaI-NOT-DapA 2,4-di 28.5 2.7E+02 0.0058 25.7 7.7 114 82-212 20-137 (294)
141 cd00537 MTHFR Methylenetetrahy 27.9 3.7E+02 0.008 24.2 8.4 25 83-107 73-97 (274)
142 TIGR00676 fadh2 5,10-methylene 26.9 4.1E+02 0.0089 24.1 8.5 25 83-107 73-97 (272)
143 TIGR03849 arch_ComA phosphosul 26.8 44 0.00095 30.2 2.0 162 84-269 42-226 (237)
144 PRK10426 alpha-glucosidase; Pr 26.7 1.5E+02 0.0032 30.8 6.1 62 81-152 267-362 (635)
145 PRK08091 ribulose-phosphate 3- 26.4 2.7E+02 0.006 24.9 7.0 63 140-211 88-152 (228)
146 PF01207 Dus: Dihydrouridine s 26.4 70 0.0015 29.8 3.4 87 96-207 53-159 (309)
147 cd00953 KDG_aldolase KDG (2-ke 26.3 4.7E+02 0.01 23.8 8.8 108 83-212 20-131 (279)
148 PRK13523 NADPH dehydrogenase N 26.0 1.5E+02 0.0032 28.1 5.6 22 82-103 80-101 (337)
149 PF14488 DUF4434: Domain of un 25.7 4.1E+02 0.0088 22.4 13.0 113 46-169 30-151 (166)
150 PF13204 DUF4038: Protein of u 25.3 5.4E+02 0.012 23.6 10.3 171 82-269 87-271 (289)
151 TIGR00674 dapA dihydrodipicoli 25.2 4.5E+02 0.0097 23.9 8.5 114 82-212 18-134 (285)
152 cd06416 GH25_Lys1-like Lys-1 i 25.1 1.7E+02 0.0038 24.9 5.5 17 83-99 39-55 (196)
153 cd02070 corrinoid_protein_B12- 24.9 53 0.0011 28.5 2.2 25 83-107 148-174 (201)
154 cd02933 OYE_like_FMN Old yello 24.5 2.3E+02 0.005 26.8 6.6 22 82-103 76-97 (338)
155 COG0826 Collagenase and relate 24.4 80 0.0017 30.2 3.4 75 83-185 49-123 (347)
156 COG0572 Udk Uridine kinase [Nu 24.3 2.3E+02 0.0049 25.3 6.0 67 96-170 6-81 (218)
157 smart00812 Alpha_L_fucos Alpha 21.6 4.2E+02 0.0091 25.6 7.8 81 83-169 128-222 (384)
158 PRK10933 trehalose-6-phosphate 21.4 1.2E+02 0.0027 30.7 4.3 60 43-103 40-101 (551)
159 PRK14511 maltooligosyl trehalo 21.4 1.9E+02 0.0041 31.3 5.7 63 41-103 25-89 (879)
160 PLN02361 alpha-amylase 21.4 68 0.0015 31.3 2.3 58 44-103 37-96 (401)
161 PF07745 Glyco_hydro_53: Glyco 21.3 7.1E+02 0.015 23.6 11.5 83 197-285 196-299 (332)
162 PRK10658 putative alpha-glucos 21.3 1.8E+02 0.0038 30.5 5.4 61 81-152 323-417 (665)
163 PRK08005 epimerase; Validated 20.6 1.9E+02 0.0042 25.5 4.9 64 139-211 77-140 (210)
164 PF04309 G3P_antiterm: Glycero 20.3 1.8E+02 0.004 25.0 4.5 21 83-103 31-51 (175)
165 COG3882 FkbH Predicted enzyme 20.3 1.6E+02 0.0035 29.7 4.6 42 137-183 236-279 (574)
No 1
>cd02877 GH18_hevamine_XipI_class_III This conserved domain family includes xylanase inhibitor Xip-I, and the class III plant chitinases such as hevamine, concanavalin B, and PPL2, all of which have a glycosyl hydrolase family 18 (GH18) domain. Hevamine is a class III endochitinase that hydrolyzes the linear polysaccharide chains of chitin and peptidoglycan and is important for defense against pathogenic bacteria and fungi. PPL2 (Parkia platycephala lectin 2) is a class III chitinase from Parkia platycephala seeds that hydrolyzes beta(1-4) glycosidic bonds linking 2-acetoamido-2-deoxy-beta-D-glucopyranose units in chitin.
Probab=100.00 E-value=1.1e-65 Score=471.38 Aligned_cols=271 Identities=56% Similarity=1.016 Sum_probs=240.5
Q ss_pred CcEEEEeCCCCCCCCcccccCCCCccEEEEceeeecCCCCCccccCCCCCCCCCC-CccchHHHHHHHHhCCCeEEEEEe
Q 035598 26 GGIAIYWGQNGNEGTLKETCSTGNYEYVILSFLATFGNGQTPMINLAGHCDPYSN-GCTGLSSDIKSCQAKGVKVLLSLG 104 (298)
Q Consensus 26 ~~vv~Y~g~~~~~~~l~~~~~~~~~thii~AF~~~~~~g~~~~~~~~~~~~~~~~-~~~~l~~~i~~~q~~g~KVllSiG 104 (298)
.+|++||||+.++++|+++|+...||+|++||++.+++++.|.+++++||.+... .|++++++|+.||++|+|||||||
T Consensus 1 ~~v~vyWGq~~~~~~L~~~C~~~~~dii~i~Fl~~~~~~~~p~~n~~~~c~~~~~~~c~~~~~dI~~cq~~G~KVlLSIG 80 (280)
T cd02877 1 GNIAVYWGQNSDEGSLREYCDTGNYDIVNISFLNVFGSGGTPGLNFAGHCGGSTYPNCPQLGADIKHCQSKGKKVLLSIG 80 (280)
T ss_pred CCeEEECCCCCCCCCHHHHhCCCCccEEEEEeEcccCCCCCcccCccccCcccccccchhHHHHHHHHHHCCCEEEEEcc
Confidence 4799999999999999999999999999999999998877899999999976433 799999999999999999999999
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHhhcCCCC--CCcCCCCCccCeEeeecCCCCchhHHHHHHHHHhhhhC--CCceEEEE
Q 035598 105 GAAGSYSLTSTQDAKQVATYLWNNFLGGHS--SSRPLGPAVLDGIDLDIEGGTSQHWDELARFLAGYSQK--GKKVYVTA 180 (298)
Q Consensus 105 G~~~~~~~~~~~~~~~fa~~v~~~f~~g~s--~~~~~~~~~~DGiDiD~E~p~~~~~~~li~~LR~~~~~--g~~~llT~ 180 (298)
||++++.++++++|++||++||++|+++.+ ..||+++++|||||||||+|..++|..|+++||++++. +++|+||+
T Consensus 81 G~~~~~~~~s~~~a~~Fa~~l~~~~~~~~~~~~~rp~g~~~lDGiD~D~E~~~~~~~~~l~~~LR~~~~~~~~~~~~LTa 160 (280)
T cd02877 81 GAGGSYSLSSDADAKDFADYLWNAFGGGTDSGVPRPFGDAVVDGFDFDIEHGSPENYDALAKRLRSLFASDPSKKYYLTA 160 (280)
T ss_pred CCCCCcCCCCHHHHHHHHHHHHHHhCCccccccccccccccccceEEecccCCccCHHHHHHHHHHHhhcccCCceEEEe
Confidence 999888899999999999999999987764 57999999999999999999989999999999999742 47899999
Q ss_pred cCCCCCCcchhhhhhhcCCCceEEeeecCCCCCCCCCCChhhHHHHHHHHhcCCCC---CeEEEeeecCCCCCCCCCcCh
Q 035598 181 APQCPFPDAWIGNALKTGVFDYVWVQFYNNPPCQYSSGNIGNLLNAWKQWTSDIPA---NKIFLGLPASPAAAGSGFIPT 257 (298)
Q Consensus 181 Ap~~~~~~~~~~~~l~~~~~D~invq~Yn~~~~~~~~~~~~~~~~~~~~~~~g~p~---~KlvlG~p~~~~~a~~gy~~~ 257 (298)
||+|++|+.++...+..+.||||||||||+++|.+..+........|+.|...++. +||+||+|+++.++++|||+|
T Consensus 161 APq~~~~d~~~~~~i~~~~~D~i~vqfYn~~~c~~~~~~~~~~~~~~~~w~~~~~~~~~~kv~lGlpas~~aa~~Gyv~p 240 (280)
T cd02877 161 APQCPYPDASLGDAIATGLFDFIFVQFYNNPCCSYASGNASGFNFNWDTWTSWAKATSNAKVFLGLPASPEAAGSGYVDP 240 (280)
T ss_pred ccccCCcchhHHHHHccCccCEEEEEEecCccccccccccchhhhHHHHHHHhcccCCCceEEEecccCCCCCCCCccCH
Confidence 99999999877777766799999999999998876533333344567778766665 899999999999889999999
Q ss_pred HHHHHHHHHhhhcCCCCceEEEEeccccCC-CCcchhhcc
Q 035598 258 ADLISKVLPAIKGSAKYGGVMLWSKYYDDQ-SGYSSSIKS 296 (298)
Q Consensus 258 ~~l~~~~~~~~~~~~~~gGvm~W~~~~d~~-~~~~~~vk~ 296 (298)
++|...+.+..+++|+|||||+||+++|.. ++|++.||+
T Consensus 241 ~~l~~~v~~~~~~~~~fGGvM~Wd~~~~~~~~~y~~~i~~ 280 (280)
T cd02877 241 SELASLVLPVKQKSPNFGGVMLWDASQDKQGTGYSSKIKD 280 (280)
T ss_pred HHHHHHHHHHhhcCCCCcEEEEEhHhhccCCCCHHHHhcC
Confidence 999887766666778999999999999998 889999985
No 2
>KOG4701 consensus Chitinase [Cell wall/membrane/envelope biogenesis]
Probab=100.00 E-value=1.6e-64 Score=463.06 Aligned_cols=294 Identities=40% Similarity=0.728 Sum_probs=264.5
Q ss_pred CCccchhHHHHHHHHHH-HHhccCCCCcEEEEeCCC--CCCCCcccccCCCCccEEEEceeeecCCCCCccccCCCCCCC
Q 035598 1 MAFRTAISLSFISSLLL-MLATGSNAGGIAIYWGQN--GNEGTLKETCSTGNYEYVILSFLATFGNGQTPMINLAGHCDP 77 (298)
Q Consensus 1 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~vv~Y~g~~--~~~~~l~~~~~~~~~thii~AF~~~~~~g~~~~~~~~~~~~~ 77 (298)
|-.++.+.+|..|+.|. .....++.+++++||||| ++|++|..+|....|+.|+++|+..+++++.|.+||+++|.|
T Consensus 1 M~L~~~illF~~F~~l~lsk~~~~~~t~IA~YWGQN~aG~q~~Ls~yC~~~~yd~~~lsFL~~F~~~~Tp~LNfAn~Csd 80 (568)
T KOG4701|consen 1 MRLISSLLLFVYFARLALSKLNLTNQTAIAGYWGQNLAGDQKRLSSYCQNTTYDAIILSFLIDFNVDGTPVLNFANLCSD 80 (568)
T ss_pred CcHHHHHHHHHHHHHccccccccccccceEEEeccccccchhhhhhhhccCccceeeeehhhhcCCCCCceeehhcccCc
Confidence 44555555554444444 344567788999999999 788999999999999999999999999999999999999987
Q ss_pred CCC----CccchHHHHHHHHhCCCeEEEEEeCCCCCCCCCCHHHHHHHHHHHHHhhcCCCCCCcCCCCCccCeEeeecCC
Q 035598 78 YSN----GCTGLSSDIKSCQAKGVKVLLSLGGAAGSYSLTSTQDAKQVATYLWNNFLGGHSSSRPLGPAVLDGIDLDIEG 153 (298)
Q Consensus 78 ~~~----~~~~l~~~i~~~q~~g~KVllSiGG~~~~~~~~~~~~~~~fa~~v~~~f~~g~s~~~~~~~~~~DGiDiD~E~ 153 (298)
... .|.++.++|+.||.+|+|||||+||..|+|.+.++++++.||+.+||.|++|.+..|||++..+||||||+|.
T Consensus 81 ~~~~~l~~CTqi~~di~~CQS~GiKVlLSLGG~~GnYs~~~d~dA~~fA~~LWn~Fg~G~~S~RPfg~AVvDGfDF~IE~ 160 (568)
T KOG4701|consen 81 SDTFSLKKCTQIETDIQVCQSNGIKVLLSLGGYNGNYSLNNDDDATNFAFQLWNIFGSGEDSYRPFGKAVVDGFDFEIEK 160 (568)
T ss_pred cccccccccchhhhHHHHHHhcCeEEEEeccCcccceeeccchhHHHHHHHHHHHhcCCccccCcccchhccceeeeeec
Confidence 643 5999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCchhHHHHHHHHHhhhh-CCCceEEEEcCCCCCCcchhhhhhhcCCCceEEeeecCCCCCCCCCCChhhHHHHHHHHhc
Q 035598 154 GTSQHWDELARFLAGYSQ-KGKKVYVTAAPQCPFPDAWIGNALKTGVFDYVWVQFYNNPPCQYSSGNIGNLLNAWKQWTS 232 (298)
Q Consensus 154 p~~~~~~~li~~LR~~~~-~g~~~llT~Ap~~~~~~~~~~~~l~~~~~D~invq~Yn~~~~~~~~~~~~~~~~~~~~~~~ 232 (298)
..++.|..|.++||+.|. .+++|+||+|||||+||+.++.+|....|||++|||||++.|.+..++..+..++|.+|..
T Consensus 161 g~~~~ysaLA~~L~~~Fa~~~r~yYLsaAPQCP~PD~~~G~aL~~~~fDf~~IQFYNN~~CS~SsG~~Q~~fDsW~~ya~ 240 (568)
T KOG4701|consen 161 GTNTAYSALAKRLLEIFASDPRRYYLSAAPQCPVPDHTLGKALSENSFDFLSIQFYNNSTCSGSSGSRQSTFDAWVEYAE 240 (568)
T ss_pred CCcchHHHHHHHHHHHHccCCceEEeccCCCCCCCchhhhhhhhccccceEEEEeecCCCcccccCcccccHHHHHHHHh
Confidence 999999999999999984 5688999999999999999999998899999999999999999987777777899999988
Q ss_pred CCCCCe---EEEeeecCCCCCCCCCcChHHHHHHHHHhhhcCCCCceEEEEec---cccCCCC-cchhh
Q 035598 233 DIPANK---IFLGLPASPAAAGSGFIPTADLISKVLPAIKGSAKYGGVMLWSK---YYDDQSG-YSSSI 294 (298)
Q Consensus 233 g~p~~K---lvlG~p~~~~~a~~gy~~~~~l~~~~~~~~~~~~~~gGvm~W~~---~~d~~~~-~~~~v 294 (298)
.+.+.| ++||+|+.+.+||+||++|+.|.+.+++.+++...|||||+|+. +|+..|| |..+|
T Consensus 241 ~~a~nKn~~lFLGLPg~~~AAGSGYIsp~~Lt~~~l~~~a~S~~fGGv~LWd~s~aF~~~~NG~~~~~I 309 (568)
T KOG4701|consen 241 DSAYNKNTSLFLGLPGHQNAAGSGYISPKNLTRDLLNYKANSTLFGGVTLWDTSLAFMSYDNGSFVEAI 309 (568)
T ss_pred hhcccccceEEeeccCCcccccCCccCchHHHHHHHHhhhhccccccEEEeechhhhhhcccCchHHHH
Confidence 776666 99999999999999999999999999999999999999999998 7887887 75554
No 3
>cd02871 GH18_chitinase_D-like GH18 domain of Chitinase D (ChiD). ChiD, a chitinase found in Bacillus circulans, hydrolyzes the 1,4-beta-linkages of N-acetylglucosamine in chitin and chitodextrins. The domain architecture of ChiD includes a catalytic glycosyl hydrolase family 18 (GH18) domain, a chitin-binding domain, and a fibronectin type III domain. The chitin-binding and fibronectin type III domains are located either N-terminal or C-terminal to the catalytic domain. This family includes exochitinase Chi36 from Bacillus cereus.
Probab=100.00 E-value=1.4e-48 Score=364.51 Aligned_cols=255 Identities=25% Similarity=0.427 Sum_probs=189.4
Q ss_pred CcEEEEeCCCCCCCC-c--ccccCCCCccEEEEceeeecCCCCCc-cccCCCCCCCCCCCccchHHHHHHHHhCCCeEEE
Q 035598 26 GGIAIYWGQNGNEGT-L--KETCSTGNYEYVILSFLATFGNGQTP-MINLAGHCDPYSNGCTGLSSDIKSCQAKGVKVLL 101 (298)
Q Consensus 26 ~~vv~Y~g~~~~~~~-l--~~~~~~~~~thii~AF~~~~~~g~~~-~~~~~~~~~~~~~~~~~l~~~i~~~q~~g~KVll 101 (298)
++++|||+.|..... . ....+++.||||+|||+.+++++... .++.... +....+.++.++|+.||++|+||||
T Consensus 1 k~~vgY~~~w~~~~~~~~~~~~~~~~~yt~i~~AF~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~i~~~q~~G~KVll 78 (312)
T cd02871 1 KVLVGYWHNWDNGAGSGRQDLDDVPSKYNVINVAFAEPTSDGGGEVTFNNGSS--PGGYSPAEFKADIKALQAKGKKVLI 78 (312)
T ss_pred CeEEEecCcccCCCCCCCCCcccCCCCCCEEEEcceeecCCCceeEeecccCC--cccCChHHHHHHHHHHHHCCCEEEE
Confidence 478999987743221 1 22345789999999999987665322 1221111 1123467889999999999999999
Q ss_pred EEeCCCCCCCCCCHHHHHHHHHHHHHhhcCCCCCCcCCCCCccCeEeeecCCCCc--------hhHHHHHHHHHhhhhCC
Q 035598 102 SLGGAAGSYSLTSTQDAKQVATYLWNNFLGGHSSSRPLGPAVLDGIDLDIEGGTS--------QHWDELARFLAGYSQKG 173 (298)
Q Consensus 102 SiGG~~~~~~~~~~~~~~~fa~~v~~~f~~g~s~~~~~~~~~~DGiDiD~E~p~~--------~~~~~li~~LR~~~~~g 173 (298)
|||||.++..+++++.|++|+++++ +++++|+|||||||||+|.. +++..++++||+.+ +
T Consensus 79 SiGG~~~~~~~~~~~~~~~fa~sl~----------~~~~~~g~DGiDiD~E~~~~~~~~~~~~~~~~~~lk~lr~~~--~ 146 (312)
T cd02871 79 SIGGANGHVDLNHTAQEDNFVDSIV----------AIIKEYGFDGLDIDLESGSNPLNATPVITNLISALKQLKDHY--G 146 (312)
T ss_pred EEeCCCCccccCCHHHHHHHHHHHH----------HHHHHhCCCeEEEecccCCccCCcHHHHHHHHHHHHHHHHHc--C
Confidence 9999988777788899999999998 67899999999999999863 46788888888874 5
Q ss_pred CceEEEEcCCCCCCcc-----------hh--hhhhhcCCCceEEeeecCCCCC-CCCC----CChhhHHH----HHHHHh
Q 035598 174 KKVYVTAAPQCPFPDA-----------WI--GNALKTGVFDYVWVQFYNNPPC-QYSS----GNIGNLLN----AWKQWT 231 (298)
Q Consensus 174 ~~~llT~Ap~~~~~~~-----------~~--~~~l~~~~~D~invq~Yn~~~~-~~~~----~~~~~~~~----~~~~~~ 231 (298)
++++||+||+|++++. +. ...+ ..+||||||||||+++| ++.. ....++.. .|..|.
T Consensus 147 ~~~~lT~AP~~~~~~~~~~~~~~~~~~y~~~~~~~-~~~~D~invqfYn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 225 (312)
T cd02871 147 PNFILTMAPETPYVQGGYAAYGGIWGAYLPLIDNL-RDDLTWLNVQYYNSGGMGGCDGQSYSQGTADFLVALADMLLTGF 225 (312)
T ss_pred CCeEEEECCCcccccCcccccccCCcchhHHHHHh-hhheeEEEEeeccCCCcccccccCCccchhHHHHHHHHHHHcCC
Confidence 6899999999998762 11 1223 46999999999999854 2211 11223322 233332
Q ss_pred --------cCCCCCeEEEeeecCCCCCCCCCcChHHHHHHHHHhhhc------------CCCCceEEEEeccccCCCCc-
Q 035598 232 --------SDIPANKIFLGLPASPAAAGSGFIPTADLISKVLPAIKG------------SAKYGGVMLWSKYYDDQSGY- 290 (298)
Q Consensus 232 --------~g~p~~KlvlG~p~~~~~a~~gy~~~~~l~~~~~~~~~~------------~~~~gGvm~W~~~~d~~~~~- 290 (298)
.++|++|||+|+|+.+.++++||++|+++.+.+ ..+++ ||+|||||+|+++||+.++|
T Consensus 226 ~~~~~~~~~~~p~~Kv~iG~pa~~~aa~~gyv~~~~l~~~i-~~l~~~~~~~~~~~~~~y~~~gGvm~W~~~~d~~~~~~ 304 (312)
T cd02871 226 PIAGNDRFPPLPADKVVIGLPASPSAAGGGYVSPSEVIKAL-DCLMKGTNCGSYYPAGGYPSLRGLMTWSINWDATNNYE 304 (312)
T ss_pred CccCCcccccCChhhEEEeccCCCCccCCCccCHHHHHHHH-HHHhcCCCCCcccCCCCCCCcceEEEEEecccCcCCcc
Confidence 238999999999999988889999999998665 44443 48999999999999999985
Q ss_pred -chhhcc
Q 035598 291 -SSSIKS 296 (298)
Q Consensus 291 -~~~vk~ 296 (298)
++.++.
T Consensus 305 f~~~~~~ 311 (312)
T cd02871 305 FSKNYGA 311 (312)
T ss_pred cchhccC
Confidence 665543
No 4
>cd06546 GH18_CTS3_chitinase GH18 domain of CTS3 (chitinase 3), an uncharacterized protein from the human fungal pathogen Coccidioides posadasii. CTS3 has a chitinase-like glycosyl hydrolase family 18 (GH18) domain; and has homologs in bacteria as well as fungi.
Probab=100.00 E-value=1.5e-47 Score=348.01 Aligned_cols=234 Identities=28% Similarity=0.373 Sum_probs=178.0
Q ss_pred cEEEEeCCCCCC-C----Ccc-cccCCCCccEEEEceeeecCCCCCccccCCCCCCCCCCCccchHHHHHHHHhCCCeEE
Q 035598 27 GIAIYWGQNGNE-G----TLK-ETCSTGNYEYVILSFLATFGNGQTPMINLAGHCDPYSNGCTGLSSDIKSCQAKGVKVL 100 (298)
Q Consensus 27 ~vv~Y~g~~~~~-~----~l~-~~~~~~~~thii~AF~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~i~~~q~~g~KVl 100 (298)
|+||||+.|... + .++ ..++..+||||||||+++..+|. +.+.++ .+..+.+.+++++|+.||++|+|||
T Consensus 1 r~v~y~~~~~~~~~~~~~~~~~~~~~~~~~THvi~af~~i~~~G~---l~~~d~-~~~~~~~~~~~~~i~~~~~~g~KVl 76 (256)
T cd06546 1 RLVIYYQTTHPSNGDPISSLLLVTEKGIALTHLIVAALHINDDGN---IHLNDH-PPDHPRFTTLWTELAILQSSGVKVM 76 (256)
T ss_pred CEEEEEccEECCCCCcccccccccCCCCCCceEEEEEEEECCCCe---EEECCC-CCCcchhhHHHHHHHHHHhCCCEEE
Confidence 689999877321 1 132 24567899999999999987764 344433 2222345578899999999999999
Q ss_pred EEEeCCC-CCCCC--CCHHHHHHHHHHHHHhhcCCCCCCcCCCCCccCeEeeecCCCCc-hhHHHHHHHHHhhhhCCCce
Q 035598 101 LSLGGAA-GSYSL--TSTQDAKQVATYLWNNFLGGHSSSRPLGPAVLDGIDLDIEGGTS-QHWDELARFLAGYSQKGKKV 176 (298)
Q Consensus 101 lSiGG~~-~~~~~--~~~~~~~~fa~~v~~~f~~g~s~~~~~~~~~~DGiDiD~E~p~~-~~~~~li~~LR~~~~~g~~~ 176 (298)
||||||+ ++++. .+++.|++|++++. +++++|+|||||||||+|.. .+|..|+++||+.+ ++++
T Consensus 77 lSiGG~~~~~fs~~a~~~~~r~~f~~s~~----------~~~~~~~~DGiDiDwE~p~~~~~~~~ll~~Lr~~~--~~~~ 144 (256)
T cd06546 77 GMLGGAAPGSFSRLDDDDEDFERYYGQLR----------DMIRRRGLDGLDLDVEEPMSLDGIIRLIDRLRSDF--GPDF 144 (256)
T ss_pred EEECCCCCCCcccccCCHHHHHHHHHHHH----------HHHHHhCCCceEEeeecCCCHhHHHHHHHHHHHHh--CCCc
Confidence 9999996 44543 46778999999986 67899999999999999964 69999999999985 5789
Q ss_pred EEEEcCCCCCCc---chh-----hhhh--hcCCCceEEeeecCCCCCCCCCCChhhHHHHHHHHhc-CCCCCeEEEeeec
Q 035598 177 YVTAAPQCPFPD---AWI-----GNAL--KTGVFDYVWVQFYNNPPCQYSSGNIGNLLNAWKQWTS-DIPANKIFLGLPA 245 (298)
Q Consensus 177 llT~Ap~~~~~~---~~~-----~~~l--~~~~~D~invq~Yn~~~~~~~~~~~~~~~~~~~~~~~-g~p~~KlvlG~p~ 245 (298)
+||+||+|+... .++ .+.. ..++|||+|+||||++++... . ..|..|.+ ++|++||++|+|+
T Consensus 145 ~lT~Ap~~~~~~~g~~~~~~~~~~~l~~~~~~~~Df~nvQfYn~~g~~~~---~----~~~~~~~~~~~~~~Kv~iGlpa 217 (256)
T cd06546 145 IITLAPVASALTGGEANLSGFDYRELEQARGDKIDFYNAQFYNGFGSMSS---P----SDYDAIVAQGWDPERIVIGLLT 217 (256)
T ss_pred EEEECCccccccCCcccccccCHHHHHHhhCCceeEEEEcCcCCCCCccC---H----HHHHHHHHcCCCcccEEEEEec
Confidence 999999987421 111 1111 147899999999998743221 1 23455654 8999999999999
Q ss_pred CCCCCCCCCcChHHHHHHHHHhhhcCCCCceEEEEeccc
Q 035598 246 SPAAAGSGFIPTADLISKVLPAIKGSAKYGGVMLWSKYY 284 (298)
Q Consensus 246 ~~~~a~~gy~~~~~l~~~~~~~~~~~~~~gGvm~W~~~~ 284 (298)
.+. +++|||+|++|.+.+.+..+++++|||||+||+..
T Consensus 218 ~~~-a~~Gyv~~~~l~~~v~~l~~~~~~~gGvm~W~~~~ 255 (256)
T cd06546 218 NPD-NGQGFVPFDTLSSTLSTLRQRYPNFGGVMGWEYFN 255 (256)
T ss_pred cCC-cCCCccCHHHHHHHHHHHHHhCCCCceEEEecccC
Confidence 986 56799999999877666666889999999999764
No 5
>cd06545 GH18_3CO4_chitinase The Bacteroides thetaiotaomicron protein represented by pdb structure 3CO4 is an uncharacterized bacterial member of the family 18 glycosyl hydrolases with homologs found in Flavobacterium, Stigmatella, and Pseudomonas.
Probab=100.00 E-value=2.6e-38 Score=286.99 Aligned_cols=235 Identities=23% Similarity=0.321 Sum_probs=174.9
Q ss_pred EEEEeCCCCCCCCcccccCCCCccEEEEceeeecCCCCCccccCCCCCCCCCCCccchHHHHHHHHhCCCeEEEEEeCCC
Q 035598 28 IAIYWGQNGNEGTLKETCSTGNYEYVILSFLATFGNGQTPMINLAGHCDPYSNGCTGLSSDIKSCQAKGVKVLLSLGGAA 107 (298)
Q Consensus 28 vv~Y~g~~~~~~~l~~~~~~~~~thii~AF~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~i~~~q~~g~KVllSiGG~~ 107 (298)
|+|||+.|.....+++.|+..+||||+++|+.+.++|. +.+.. .+..+...++.+|++|+|||+||||+.
T Consensus 1 vigyy~~w~~~~~~~~~~~~~~lThv~~~f~~i~~~G~---l~~~~-------~~~~~~~~~~~~~~~~~kvl~sigg~~ 70 (253)
T cd06545 1 VVGYLPNYDDLNALSPTIDFSKLTHINLAFANPDANGT---LNANP-------VRSELNSVVNAAHAHNVKILISLAGGS 70 (253)
T ss_pred CEEEeCCcccccCCcccCChhhCCeEEEEEEEECCCCe---EEecC-------cHHHHHHHHHHHHhCCCEEEEEEcCCC
Confidence 58999988655457889999999999999999887764 22221 124567788899999999999999986
Q ss_pred CCC---CCCCHHHHHHHHHHHHHhhcCCCCCCcCCCCCccCeEeeecCCCCc--hhHHHHHHHHHhhhhCCCceEEEEcC
Q 035598 108 GSY---SLTSTQDAKQVATYLWNNFLGGHSSSRPLGPAVLDGIDLDIEGGTS--QHWDELARFLAGYSQKGKKVYVTAAP 182 (298)
Q Consensus 108 ~~~---~~~~~~~~~~fa~~v~~~f~~g~s~~~~~~~~~~DGiDiD~E~p~~--~~~~~li~~LR~~~~~g~~~llT~Ap 182 (298)
.+. .+.+++.|++|+++++ +++++|+|||||||||+|.. ++|..|+++||+.++. .+++||+|+
T Consensus 71 ~~~~~~~~~~~~~r~~fi~~lv----------~~~~~~~~DGIdiDwE~~~~~~~~~~~fv~~Lr~~l~~-~~~~lt~av 139 (253)
T cd06545 71 PPEFTAALNDPAKRKALVDKII----------NYVVSYNLDGIDVDLEGPDVTFGDYLVFIRALYAALKK-EGKLLTAAV 139 (253)
T ss_pred CCcchhhhcCHHHHHHHHHHHH----------HHHHHhCCCceeEEeeccCccHhHHHHHHHHHHHHHhh-cCcEEEEEc
Confidence 432 3467889999999997 57899999999999999975 6899999999998742 367899998
Q ss_pred CCCCCcchhhhhhhcCCCceEEeeecCCCCCCC--CC---CChhhHHHHHHHHhc-CC-CCCeEEEeeecCCCCCCCCCc
Q 035598 183 QCPFPDAWIGNALKTGVFDYVWVQFYNNPPCQY--SS---GNIGNLLNAWKQWTS-DI-PANKIFLGLPASPAAAGSGFI 255 (298)
Q Consensus 183 ~~~~~~~~~~~~l~~~~~D~invq~Yn~~~~~~--~~---~~~~~~~~~~~~~~~-g~-p~~KlvlG~p~~~~~a~~gy~ 255 (298)
.+.... +....+ .+++|||+||+||.++... .+ .+...+..++++|.. |+ |++||+||+|++.. +-.|-
T Consensus 140 ~~~~~~-~~~~~~-~~~vD~i~vMtYD~~g~~~~~~~g~~a~~~~~~~~v~~~~~~g~ip~~KlvlGlp~YG~--~w~~~ 215 (253)
T cd06545 140 SSWNGG-AVSDST-LAYFDFINIMSYDATGPWWGDNPGQHSSYDDAVNDLNYWNERGLASKDKLVLGLPFYGY--GFYYN 215 (253)
T ss_pred cCcccc-cccHHH-HhhCCEEEEEcCcCCCCCCCCCCCCCCchHhHHHHHHHHHHcCCCCHHHEEEEeCCccc--cccCC
Confidence 764222 222222 3789999999999863111 11 122345678888875 76 99999999999943 12345
Q ss_pred ChHHHHHHHHHhhhcCCCCceEEEEeccccCCCCc
Q 035598 256 PTADLISKVLPAIKGSAKYGGVMLWSKYYDDQSGY 290 (298)
Q Consensus 256 ~~~~l~~~~~~~~~~~~~~gGvm~W~~~~d~~~~~ 290 (298)
++..+... ++..++. |||||+|++..|..+..
T Consensus 216 ~~~~~~~~-~~~~~~~--~gG~~~w~~~~d~~~~~ 247 (253)
T cd06545 216 GIPTIRNK-VAFAKQN--YGGVMIWELSQDASGEN 247 (253)
T ss_pred CHHHHHHH-HHHHHHh--cCeEEEEeccCCCCCCc
Confidence 55566543 4555554 99999999999986544
No 6
>cd02879 GH18_plant_chitinase_class_V The class V plant chitinases have a glycosyl hydrolase family 18 (GH18) domain, but lack the chitin-binding domain present in other GH18 enzymes. The GH18 domain of the class V chitinases has endochitinase activity in some cases and no catalytic activity in others. Included in this family is a lectin found in black locust (Robinia pseudoacacia) bark, which binds chitin but lacks chitinase activity. Also included is a chitinase-related receptor-like kinase (CHRK1) from tobacco (Nicotiana tabacum), with an N-terminal GH18 domain and a C-terminal kinase domain, which is thought to be part of a plant signaling pathway. The GH18 domain of CHRK1 is expressed extracellularly where it binds chitin but lacks chitinase activity.
Probab=100.00 E-value=1.7e-36 Score=281.54 Aligned_cols=242 Identities=20% Similarity=0.224 Sum_probs=168.9
Q ss_pred CcEEEEeCCCCCCCCcccccCCCCccEEEEceeeecCCCCCccccCCCCCCCCCCCccchHHHHHHHH--hCCCeEEEEE
Q 035598 26 GGIAIYWGQNGNEGTLKETCSTGNYEYVILSFLATFGNGQTPMINLAGHCDPYSNGCTGLSSDIKSCQ--AKGVKVLLSL 103 (298)
Q Consensus 26 ~~vv~Y~g~~~~~~~l~~~~~~~~~thii~AF~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~i~~~q--~~g~KVllSi 103 (298)
-.++|||.+|. .+..++.++.++||||+|||+.+..++.. +.+.+. ....+.+.++.+| .+++||||||
T Consensus 3 ~~~~~Y~~~w~-~~~~~~~i~~~~~THi~yaf~~~~~~~~~--~~~~~~------~~~~~~~~~~~~k~~~~~lkvlisi 73 (299)
T cd02879 3 IVKGGYWPAWS-EEFPPSNIDSSLFTHLFYAFADLDPSTYE--VVISPS------DESEFSTFTETVKRKNPSVKTLLSI 73 (299)
T ss_pred eEEEEEECCCC-CCCChhHCCcccCCEEEEEEEEecCCCCE--Eeeccc------cHHHHHHHHHHHHHhCCCCeEEEEE
Confidence 36789999876 44567888999999999999998765421 222211 1122334444444 4589999999
Q ss_pred eCCCC-CCC----CCCHHHHHHHHHHHHHhhcCCCCCCcCCCCCccCeEeeecCCCCc----hhHHHHHHHHHhhhh---
Q 035598 104 GGAAG-SYS----LTSTQDAKQVATYLWNNFLGGHSSSRPLGPAVLDGIDLDIEGGTS----QHWDELARFLAGYSQ--- 171 (298)
Q Consensus 104 GG~~~-~~~----~~~~~~~~~fa~~v~~~f~~g~s~~~~~~~~~~DGiDiD~E~p~~----~~~~~li~~LR~~~~--- 171 (298)
|||+. +.. .++++.|++|+++++ +++++|+|||||||||+|.. ++|+.|+++||+.++
T Consensus 74 GG~~~~s~~fs~~~~~~~~R~~fi~siv----------~~l~~~~fDGidiDWE~P~~~~d~~n~~~ll~elr~~l~~~~ 143 (299)
T cd02879 74 GGGGSDSSAFAAMASDPTARKAFINSSI----------KVARKYGFDGLDLDWEFPSSQVEMENFGKLLEEWRAAVKDEA 143 (299)
T ss_pred eCCCCCCchhhHHhCCHHHHHHHHHHHH----------HHHHHhCCCceeecccCCCChhHHHHHHHHHHHHHHHHHHHh
Confidence 99984 333 356888999999997 67899999999999999963 689999999999874
Q ss_pred --CC-CceEEEEcCCCCCC------cchhh-hhhhcCCCceEEeeecCCCCCCC----CCC-------ChhhHHHHHHHH
Q 035598 172 --KG-KKVYVTAAPQCPFP------DAWIG-NALKTGVFDYVWVQFYNNPPCQY----SSG-------NIGNLLNAWKQW 230 (298)
Q Consensus 172 --~g-~~~llT~Ap~~~~~------~~~~~-~~l~~~~~D~invq~Yn~~~~~~----~~~-------~~~~~~~~~~~~ 230 (298)
.+ ++++||+|+..... ...++ ..+ .+++||||||.||.++... .+. ...+...+++.|
T Consensus 144 ~~~~~~~~~ls~av~~~~~~~~~~~~~~yd~~~l-~~~vD~i~vMtYD~~g~~~~~~~~~~a~l~~~~~~~~~~~~v~~~ 222 (299)
T cd02879 144 RSSGRPPLLLTAAVYFSPILFLSDDSVSYPIEAI-NKNLDWVNVMAYDYYGSWESNTTGPAAALYDPNSNVSTDYGIKSW 222 (299)
T ss_pred hccCCCcEEEEeecccchhhccccccccCCHHHH-HhhCCEEEEEeecccCCCCCCCCCCCCcCCCCCCCCCHHHHHHHH
Confidence 22 57999998754210 01111 233 4899999999999764210 000 112456778888
Q ss_pred hc-CCCCCeEEEeeecCCCC-------CC-------C---CCcChHHHHHHHHHhhhcCCCCceEEEEeccccCCCC
Q 035598 231 TS-DIPANKIFLGLPASPAA-------AG-------S---GFIPTADLISKVLPAIKGSAKYGGVMLWSKYYDDQSG 289 (298)
Q Consensus 231 ~~-g~p~~KlvlG~p~~~~~-------a~-------~---gy~~~~~l~~~~~~~~~~~~~~gGvm~W~~~~d~~~~ 289 (298)
.. |+|++||+||+|++... +. . +|-+++.+... .+.++ ..++||||+|++..|..++
T Consensus 223 ~~~g~p~~KlvlGvp~YGr~~~~~D~~~~~~y~~~~~~wi~ydd~~Si~~K-~~~a~-~~~lgGv~~W~l~~Dd~~~ 297 (299)
T cd02879 223 IKAGVPAKKLVLGLPLYGRAWTLYDTTTVSSYVYAGTTWIGYDDVQSIAVK-VKYAK-QKGLLGYFAWAVGYDDNNW 297 (299)
T ss_pred HHcCCCHHHEEEEeccccccccccCCCcceEEEEECCEEEEeCCHHHHHHH-HHHHH-hCCCCeEEEEEeecCCccc
Confidence 75 99999999999998521 11 1 14456666544 34444 4589999999999997664
No 7
>cd06544 GH18_narbonin Narbonin is a plant 2S protein from the globulin fraction of narbon bean (Vicia narbonensis L.) cotyledons with unknown function. Narbonin has a glycosyl hydrolase family 18 (GH18) domain without the conserved catalytic residues and with no known enzymatic activity. Narbonin amounts to up to 3% of the total seed globulins of mature seeds and was thought to be a storage protein but was found to degrade too slowly during germination. This family also includes the VfNOD32 nodulin from Vicia faba.
Probab=100.00 E-value=1.3e-36 Score=275.31 Aligned_cols=232 Identities=22% Similarity=0.274 Sum_probs=159.3
Q ss_pred EEeCCCCCCCCcccccCCCC--ccEEEEceeeecCCCCCcc-ccCCCCCCCCCCCccchHHHHHHHHh--CCCeEEEEEe
Q 035598 30 IYWGQNGNEGTLKETCSTGN--YEYVILSFLATFGNGQTPM-INLAGHCDPYSNGCTGLSSDIKSCQA--KGVKVLLSLG 104 (298)
Q Consensus 30 ~Y~g~~~~~~~l~~~~~~~~--~thii~AF~~~~~~g~~~~-~~~~~~~~~~~~~~~~l~~~i~~~q~--~g~KVllSiG 104 (298)
-|-|......++. .++... ||||||||+....+...|. ..+ .+..+......++++.+|+ +++|||||||
T Consensus 4 ~y~~~~~~~~~~~-dip~~~~~~thii~aFa~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~lK~~~p~lKvllSiG 78 (253)
T cd06544 4 EYIGADFNGVTFS-DVPINPKVEFHFILSFAIDYDTESNPTNGKF----NPYWDTENLTPEAVKSIKAQHPNVKVVISIG 78 (253)
T ss_pred hhhccCCCCcccc-ccCCCCCeeEEEEEEeeeecccccCCCCCcc----ccccCccccCHHHHHHHHHhCCCcEEEEEeC
Confidence 3555333322333 334445 9999999994321100000 011 1111122345677777765 4799999999
Q ss_pred CCCCC--CCCCCHHHHH----HHHHHHHHhhcCCCCCCcCCCCCccCeEeeecCCCC--chhHHHHHHHHHhhhhCCCce
Q 035598 105 GAAGS--YSLTSTQDAK----QVATYLWNNFLGGHSSSRPLGPAVLDGIDLDIEGGT--SQHWDELARFLAGYSQKGKKV 176 (298)
Q Consensus 105 G~~~~--~~~~~~~~~~----~fa~~v~~~f~~g~s~~~~~~~~~~DGiDiD~E~p~--~~~~~~li~~LR~~~~~g~~~ 176 (298)
||+.+ ....+++.|+ +|++++. +++++|+|||||||||+|. .++|..|+++||+.++. ++
T Consensus 79 G~~~~~~~~~~~~~~~~~~~~~fv~S~~----------~~l~~~~fDGiDiDwE~~~~d~~~f~~ll~~l~~~l~~-~~- 146 (253)
T cd06544 79 GRGVQNNPTPFDPSNVDSWVSNAVSSLT----------SIIQTYNLDGIDIDYEHFPADPDTFVECIGQLITELKN-NG- 146 (253)
T ss_pred CCCCCCCccccCchhhhhHHHHHHHHHH----------HHHHHhCCCceeeecccCCcCHHHHHHHHHHHHHHhhh-cC-
Confidence 99842 2333444444 4566664 7899999999999999986 37899999999998742 22
Q ss_pred EEEEcCCCCCCcc---hhhhhhh--cCCCceEEeeecCCCCCCCCCCChhhHHHHHHHHhcCCCCCeEEEeeecCCCCCC
Q 035598 177 YVTAAPQCPFPDA---WIGNALK--TGVFDYVWVQFYNNPPCQYSSGNIGNLLNAWKQWTSDIPANKIFLGLPASPAAAG 251 (298)
Q Consensus 177 llT~Ap~~~~~~~---~~~~~l~--~~~~D~invq~Yn~~~~~~~~~~~~~~~~~~~~~~~g~p~~KlvlG~p~~~~~a~ 251 (298)
+||+|+.+|..+. ++...+. .+.+|++++||||.++|. +.+.+.+.|++|.+++|++||++|+|+++.++
T Consensus 147 ~lt~a~vap~~~~~~~~y~~~~~~~~d~id~~~~qfy~~~~~~----~~~~~~~~~~~~~~~~p~~Kv~lGl~a~~~~~- 221 (253)
T cd06544 147 VIKVASIAPSEDAEQSHYLALYNAYGDYIDYVNYQFYNYGVPT----TVAKYVEFYDEVANNYPGKKVLASFSTDGEDG- 221 (253)
T ss_pred CeEEEEecCCccccccccHHHHHHhhCceeEEEhhhhCCCCCC----CHHHHHHHHHHHHhCCCcccEEEEEecCCCcc-
Confidence 7777776664332 1111111 478899999999988664 45567788999999999999999999998643
Q ss_pred CCCcChHHHHHHHHHhhhcCCCCceEEEEecccc
Q 035598 252 SGFIPTADLISKVLPAIKGSAKYGGVMLWSKYYD 285 (298)
Q Consensus 252 ~gy~~~~~l~~~~~~~~~~~~~~gGvm~W~~~~d 285 (298)
++++|+.+. ..++.+++.+++||||+|+++++
T Consensus 222 -~~v~~~~~~-~~lp~l~~~~~~gGvm~W~~~~~ 253 (253)
T cd06544 222 -ANIPGEIFI-GGCKRLKKNGSLPGVFIWNADDS 253 (253)
T ss_pred -CcCChHHhh-hhchHhhhCCCCCeEEEEecCCC
Confidence 469999987 45799998899999999999874
No 8
>COG3469 Chitinase [Carbohydrate transport and metabolism]
Probab=100.00 E-value=5.3e-36 Score=262.93 Aligned_cols=241 Identities=25% Similarity=0.476 Sum_probs=177.8
Q ss_pred CCcEEEEeCCCCC-------CCC-----cccccCCCCccEEEEceeeecCCCCCccccCCCCCCCCCCCccchHHHHHHH
Q 035598 25 AGGIAIYWGQNGN-------EGT-----LKETCSTGNYEYVILSFLATFGNGQTPMINLAGHCDPYSNGCTGLSSDIKSC 92 (298)
Q Consensus 25 ~~~vv~Y~g~~~~-------~~~-----l~~~~~~~~~thii~AF~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~i~~~ 92 (298)
..+++|||+.|.. +++ |.+ .+..|+++..+|.... |..|+.. |......+|.+++..+
T Consensus 25 ~KvLvGyWHnw~sgaaDgyq~gs~adial~d--~~~~ynvv~V~Fmk~~--g~iptf~------P~~~~daeFr~~v~aL 94 (332)
T COG3469 25 NKVLVGYWHNWKSGAADGYQQGSSADIALAD--TPRNYNVVTVSFMKGA--GDIPTFK------PYNDPDAEFRAQVGAL 94 (332)
T ss_pred cceEEEeeecccccccccccccceeeeEecc--CCcccceEEEEEeecC--CCCcccC------cCCCCHHHHHHHHHHh
Confidence 3489999998842 222 333 3778999999998643 3344332 3334457899999999
Q ss_pred HhCCCeEEEEEeCCCCCCCCCCHHHHHHHHHHHHHhhcCCCCCCcCCCCCccCeEeeecCCCCc-----h-hHHHHHHHH
Q 035598 93 QAKGVKVLLSLGGAAGSYSLTSTQDAKQVATYLWNNFLGGHSSSRPLGPAVLDGIDLDIEGGTS-----Q-HWDELARFL 166 (298)
Q Consensus 93 q~~g~KVllSiGG~~~~~~~~~~~~~~~fa~~v~~~f~~g~s~~~~~~~~~~DGiDiD~E~p~~-----~-~~~~li~~L 166 (298)
+.+|+-||||+||+.++..+...+ -.+|++.|+ |++++|||||+|||.|.... + -..++++.+
T Consensus 95 naeGkavllsLGGAdghIeL~~~q-E~~fv~eii----------rlietyGFDGLDiDLEq~ai~~~dnq~v~p~alk~v 163 (332)
T COG3469 95 NAEGKAVLLSLGGADGHIELKAGQ-EQAFVNEII----------RLIETYGFDGLDIDLEQSAILAADNQTVIPAALKAV 163 (332)
T ss_pred hccCcEEEEEccCccceEEeccch-HHHHHHHHH----------HHHHHhCCCccccchhhhhhhhcCCeeehHHHHHHH
Confidence 999999999999999998887655 468999996 89999999999999998752 2 467888889
Q ss_pred Hhhhh-CCCceEEEEcCCCCCCcc--hhhhhhh--cCCCceEEeeecCCCCCC--CCC------CChhhHHHHHHHH---
Q 035598 167 AGYSQ-KGKKVYVTAAPQCPFPDA--WIGNALK--TGVFDYVWVQFYNNPPCQ--YSS------GNIGNLLNAWKQW--- 230 (298)
Q Consensus 167 R~~~~-~g~~~llT~Ap~~~~~~~--~~~~~l~--~~~~D~invq~Yn~~~~~--~~~------~~~~~~~~~~~~~--- 230 (298)
|++.+ .|++|+|||||+.||... .+..+++ .+++|||++|.||+++.. +++ .+.+.+.+.+-++
T Consensus 164 k~hyk~~Gk~f~itMAPEfPYl~~~gaY~pyin~l~~~yD~i~pQlYNqGGdg~w~~~~nawi~q~nd~~kesfly~~~~ 243 (332)
T COG3469 164 KDHYKNQGKNFFITMAPEFPYLQGWGAYIPYINELRDYYDFIAPQLYNQGGDGNWVTESNAWIAQNNDMVKESFLYYLTF 243 (332)
T ss_pred HHHHHhcCCceEEEecCCCceecCCcccchHHHHHhhHHhhhhHHHhcCCCCCCCcCccccccccccHHHHHhHHHHhhh
Confidence 98863 789999999999998543 1223332 589999999999998632 111 1112222222222
Q ss_pred --hc------CCCCCeEEEeeecCCCCCCCCCcChHHHHHHHHHhhhc-CCCCceEEEEeccccC
Q 035598 231 --TS------DIPANKIFLGLPASPAAAGSGFIPTADLISKVLPAIKG-SAKYGGVMLWSKYYDD 286 (298)
Q Consensus 231 --~~------g~p~~KlvlG~p~~~~~a~~gy~~~~~l~~~~~~~~~~-~~~~gGvm~W~~~~d~ 286 (298)
+. .+|++|+++|+|..+++|.+||+....+.+.+.+++|. .-++.|||+|+++||+
T Consensus 244 slanGtr~f~~ipa~k~aiGLPsn~daAatGyv~dpniv~n~~~rlka~g~~ikGvMTWSvNWD~ 308 (332)
T COG3469 244 SLANGTRGFEKIPADKFAIGLPSNVDAAATGYVKDPNIVDNAFNRLKATGCNIKGVMTWSVNWDA 308 (332)
T ss_pred hhhcCcccceecccceeEEecCCCcchhhcCcCCCHHHHHHHHHHhhccCCcccceEEEEEeccc
Confidence 21 37999999999999999999999744444555666664 4579999999999998
No 9
>cd06548 GH18_chitinase The GH18 (glycosyl hydrolases, family 18) type II chitinases hydrolyze chitin, an abundant polymer of N-acetylglucosamine and have been identified in bacteria, fungi, insects, plants, viruses, and protozoan parasites. The structure of this domain is an eight-stranded alpha/beta barrel with a pronounced active-site cleft at the C-terminal end of the beta-barrel.
Probab=100.00 E-value=2.1e-34 Score=270.04 Aligned_cols=245 Identities=20% Similarity=0.235 Sum_probs=164.0
Q ss_pred EEEEeCCCCCC--CCccc-ccCCCCccEEEEceeeecCCCCCccccC-------CCCCC---CCCCCccchHHHHHHHHh
Q 035598 28 IAIYWGQNGNE--GTLKE-TCSTGNYEYVILSFLATFGNGQTPMINL-------AGHCD---PYSNGCTGLSSDIKSCQA 94 (298)
Q Consensus 28 vv~Y~g~~~~~--~~l~~-~~~~~~~thii~AF~~~~~~g~~~~~~~-------~~~~~---~~~~~~~~l~~~i~~~q~ 94 (298)
|+|||+.|..- +...+ .++..+||||+|||+.+.+++.....+- ..++. ...........+++.+|+
T Consensus 1 v~~Y~~~W~~~~~~~~~~~~i~~~~~THl~yaf~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lk~ 80 (322)
T cd06548 1 VVGYFTNWGIYGRNYFVTDDIPADKLTHINYAFADIDGDGGVVTSDDEAADEAAQSVDGGADTDDQPLKGNFGQLRKLKQ 80 (322)
T ss_pred CEEEeCCCcccCCCCCcccCCChhHCcEEEEEeeeEcCCCCeEccChhhhhhccccCCcccccCCccchhHHHHHHHHHH
Confidence 58999987532 22333 5889999999999999987764311110 00000 001122334456666654
Q ss_pred --CCCeEEEEEeCCCCCCCC----CCHHHHHHHHHHHHHhhcCCCCCCcCCCCCccCeEeeecCCCCc------------
Q 035598 95 --KGVKVLLSLGGAAGSYSL----TSTQDAKQVATYLWNNFLGGHSSSRPLGPAVLDGIDLDIEGGTS------------ 156 (298)
Q Consensus 95 --~g~KVllSiGG~~~~~~~----~~~~~~~~fa~~v~~~f~~g~s~~~~~~~~~~DGiDiD~E~p~~------------ 156 (298)
+++|||+|||||+.+..| .+++.|++|+++++ +++++|+|||||||||+|..
T Consensus 81 ~~p~lkvl~siGG~~~s~~f~~~~~~~~~r~~Fi~siv----------~~l~~~~fDGidiDwE~p~~~~~~~~~~~~~d 150 (322)
T cd06548 81 KNPHLKILLSIGGWTWSGGFSDAAATEASRAKFADSAV----------DFIRKYGFDGIDIDWEYPGSGGAPGNVARPED 150 (322)
T ss_pred hCCCCEEEEEEeCCCCCCCchhHhCCHHHHHHHHHHHH----------HHHHhcCCCeEEECCcCCCCCCCCCCCCChhH
Confidence 579999999999854333 46788999999997 67999999999999999852
Q ss_pred -hhHHHHHHHHHhhhh-----CCCceEEEEcCCCCCC--cchhhhhhhcCCCceEEeeecCCCCCC----------CCC-
Q 035598 157 -QHWDELARFLAGYSQ-----KGKKVYVTAAPQCPFP--DAWIGNALKTGVFDYVWVQFYNNPPCQ----------YSS- 217 (298)
Q Consensus 157 -~~~~~li~~LR~~~~-----~g~~~llT~Ap~~~~~--~~~~~~~l~~~~~D~invq~Yn~~~~~----------~~~- 217 (298)
++|..|+++||+.++ .+++++||+|+.+... +...-..+ .+++||||||.||.++.. +..
T Consensus 151 ~~~~~~ll~~Lr~~l~~~~~~~~~~~~Ls~av~~~~~~~~~~~~~~l-~~~vD~vnlMtYD~~g~w~~~~g~~spL~~~~ 229 (322)
T cd06548 151 KENFTLLLKELREALDALGAETGRKYLLTIAAPAGPDKLDKLEVAEI-AKYLDFINLMTYDFHGAWSNTTGHHSNLYASP 229 (322)
T ss_pred HHHHHHHHHHHHHHHHHhhhccCCceEEEEEccCCHHHHhcCCHHHH-hhcCCEEEEEEeeccCCCCCCCCCCCCCCCCC
Confidence 589999999999873 2467999999765310 11111223 589999999999976420 000
Q ss_pred C---ChhhHHHHHHHHhc-CCCCCeEEEeeecCCCC-----------C-------C--CCCc---ChHHHHHHHHHhhhc
Q 035598 218 G---NIGNLLNAWKQWTS-DIPANKIFLGLPASPAA-----------A-------G--SGFI---PTADLISKVLPAIKG 270 (298)
Q Consensus 218 ~---~~~~~~~~~~~~~~-g~p~~KlvlG~p~~~~~-----------a-------~--~gy~---~~~~l~~~~~~~~~~ 270 (298)
. ...++..+++.|.. |+|++||+||+|++... + + ..++ ++..+... ++.++
T Consensus 230 ~~~~~~~~v~~~v~~~~~~gvp~~KlvlGip~YGr~~~~~~~~~D~~~~~~y~~~~~~~~~v~ydd~~Si~~K-~~~a~- 307 (322)
T cd06548 230 ADPPGGYSVDAAVNYYLSAGVPPEKLVLGVPFYGRGWTGYTRYWDEVAKAPYLYNPSTKTFISYDDPRSIKAK-ADYVK- 307 (322)
T ss_pred CCCCCCccHHHHHHHHHHcCCCHHHeEEEecccccccCCcEEEEcCCcceeEEEeCCCCeEEEeCCHHHHHHH-HHHHH-
Confidence 0 12346677888875 99999999999998532 0 0 1233 34455433 23333
Q ss_pred CCCCceEEEEecccc
Q 035598 271 SAKYGGVMLWSKYYD 285 (298)
Q Consensus 271 ~~~~gGvm~W~~~~d 285 (298)
..++||||+|++..|
T Consensus 308 ~~~LgGv~~W~l~~D 322 (322)
T cd06548 308 DKGLGGVMFWELSGD 322 (322)
T ss_pred hcCCccEEEEeccCC
Confidence 568999999999876
No 10
>COG3325 ChiA Chitinase [Carbohydrate transport and metabolism]
Probab=100.00 E-value=6.2e-34 Score=267.25 Aligned_cols=214 Identities=19% Similarity=0.269 Sum_probs=145.6
Q ss_pred CCCCcEEEEeCCCCC--C-CCcccccCCCCccEEEEceeeecCCCCC--ccccCCCCC-----------CCCCCCccchH
Q 035598 23 SNAGGIAIYWGQNGN--E-GTLKETCSTGNYEYVILSFLATFGNGQT--PMINLAGHC-----------DPYSNGCTGLS 86 (298)
Q Consensus 23 ~~~~~vv~Y~g~~~~--~-~~l~~~~~~~~~thii~AF~~~~~~g~~--~~~~~~~~~-----------~~~~~~~~~l~ 86 (298)
...+++++||++|.. . ..++..|+..++|||+|||+.+.+++.. -.+++...+ +|..+......
T Consensus 35 d~~~rvvgYY~sWs~~d~~~y~~~DIp~~qlTHInYAF~~I~~~g~~~~~~~~~~~~~~~~~~~~~~e~dp~~~~~~G~~ 114 (441)
T COG3325 35 DDQFKVVGYYTSWSQYDRQDYFPGDIPLDQLTHINYAFLDINSDGKSIESWVADEAALYGVPNIEGVELDPWSDPLKGHF 114 (441)
T ss_pred CCCceEEEEecccccCCCcccccccCCHHHhceeeEEEEEecCCCCccccccccchhhccccCcCceeeccccccccchH
Confidence 346799999998843 2 4478888999999999999999776531 011111111 12211122334
Q ss_pred HHHHHHHhC--CCeEEEEEeCCCCCCCCC----CHHHHHHHHHHHHHhhcCCCCCCcCCCCCccCeEeeecCCCCc----
Q 035598 87 SDIKSCQAK--GVKVLLSLGGAAGSYSLT----STQDAKQVATYLWNNFLGGHSSSRPLGPAVLDGIDLDIEGGTS---- 156 (298)
Q Consensus 87 ~~i~~~q~~--g~KVllSiGG~~~~~~~~----~~~~~~~fa~~v~~~f~~g~s~~~~~~~~~~DGiDiD~E~p~~---- 156 (298)
..++.+|++ .+|+++|||||+.+-.|+ +.+.|++||++++ +++++|+|||||||||||.+
T Consensus 115 ~~L~~lk~~~~d~k~l~SIGGWs~S~~F~~~aad~a~re~Fa~saV----------e~~r~~~FDGVDIDWEYP~~~~~~ 184 (441)
T COG3325 115 GALFDLKATYPDLKTLISIGGWSDSGGFSDMAADDASRENFAKSAV----------EFMRTYGFDGVDIDWEYPGSGGDA 184 (441)
T ss_pred HHHHHHhhhCCCceEEEeecccccCCCcchhhcCHHHHHHHHHHHH----------HHHHhcCCCceeeccccCCCCCCC
Confidence 667777655 579999999998665554 4688999999997 88999999999999999973
Q ss_pred ---------hhHHHHHHHHHhhhh-----CCCceEEEEcCCCCCCcc--hhhhhhhcCCCceEEeeecCCCCCC------
Q 035598 157 ---------QHWDELARFLAGYSQ-----KGKKVYVTAAPQCPFPDA--WIGNALKTGVFDYVWVQFYNNPPCQ------ 214 (298)
Q Consensus 157 ---------~~~~~li~~LR~~~~-----~g~~~llT~Ap~~~~~~~--~~~~~l~~~~~D~invq~Yn~~~~~------ 214 (298)
++|..|+++||+.++ .|++|.||+|..+. ++. .+......+++||||+|.||.+|.-
T Consensus 185 ~~~~~~~d~~ny~~Ll~eLR~~LD~a~~edgr~Y~LTiA~~as-~~~l~~~~~~~~~~~vDyiNiMTYDf~G~Wn~~~Gh 263 (441)
T COG3325 185 GNCGRPKDKANYVLLLQELRKKLDKAGVEDGRHYQLTIAAPAS-KDKLEGLNHAEIAQYVDYINIMTYDFHGAWNETLGH 263 (441)
T ss_pred CCCCCcccHHHHHHHHHHHHHHHhhcccccCceEEEEEecCCc-hhhhhcccHHHHHHHHhhhheeeeeccccccccccc
Confidence 689999999999872 57889999886543 221 1111111589999999999987510
Q ss_pred ----CC----C-CChhh-----HHHH--HHHH--hcCCCCCeEEEeeecCC
Q 035598 215 ----YS----S-GNIGN-----LLNA--WKQW--TSDIPANKIFLGLPASP 247 (298)
Q Consensus 215 ----~~----~-~~~~~-----~~~~--~~~~--~~g~p~~KlvlG~p~~~ 247 (298)
|. + ..... ..+. |-++ ..++||+|||||+|+|.
T Consensus 264 ~a~Ly~~~~d~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~klvlG~p~Yg 314 (441)
T COG3325 264 HAALYGTPKDPPLANGGFYVDAEVDGIDWLEEGFAGDVPPSKLVLGMPFYG 314 (441)
T ss_pred ccccccCCCCCccccCCeeEEEEechhHHHHhhhccCCCCceEEeeccccc
Confidence 10 0 00010 0111 2222 13789999999999995
No 11
>cd02878 GH18_zymocin_alpha Zymocin, alpha subunit. Zymocin is a heterotrimeric enzyme that inhibits yeast cell cycle progression. The zymocin alpha subunit has a chitinase activity that is essential for holoenzyme action from the cell exterior while the gamma subunit contains the intracellular toxin responsible for G1 phase cell cycle arrest. The zymocin alpha and beta subunits are thought to act from the cell's exterior by docking to the cell wall-associated chitin, thus mediating gamma-toxin translocation. The alpha subunit has an eight-stranded TIM barrel fold similar to that of family 18 glycosyl hydrolases such as hevamine, chitolectin, and chitobiase.
Probab=100.00 E-value=2.5e-33 Score=265.17 Aligned_cols=195 Identities=19% Similarity=0.230 Sum_probs=137.9
Q ss_pred cEEEEeCCCCC----CCCcccccCCCCccEEEEceeeecCCCCCccccCCCCCCCCCCCccchHHHHHHHHhCCCeEEEE
Q 035598 27 GIAIYWGQNGN----EGTLKETCSTGNYEYVILSFLATFGNGQTPMINLAGHCDPYSNGCTGLSSDIKSCQAKGVKVLLS 102 (298)
Q Consensus 27 ~vv~Y~g~~~~----~~~l~~~~~~~~~thii~AF~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~i~~~q~~g~KVllS 102 (298)
+++|||..|.. ....++.++..+||||+|||+.+..+|. +...+. ...+ .++..+ +++|||||
T Consensus 1 ~~v~Y~~~w~~~r~~~~~~~~~i~~~~~THi~yaf~~~~~~g~---l~~~~~-------~~~~-~~~~~~--k~lkvlls 67 (345)
T cd02878 1 KNIAYFEAYNLDRPCLNMDVTQIDTSKYTHIHFAFANITSDFS---VDVSSV-------QEQF-SDFKKL--KGVKKILS 67 (345)
T ss_pred CEEEEEChhhcCCCCCCCCHhHCCcccCCEEEEEeEeecCCCe---Eeeccc-------HHHH-HHHHhh--cCcEEEEE
Confidence 57999988742 1235778899999999999999877664 222110 1122 333333 45999999
Q ss_pred EeCCCCCC------CCC---CHHHHHHHHHHHHHhhcCCCCCCcCCCCCccCeEeeecCCCC--------------chhH
Q 035598 103 LGGAAGSY------SLT---STQDAKQVATYLWNNFLGGHSSSRPLGPAVLDGIDLDIEGGT--------------SQHW 159 (298)
Q Consensus 103 iGG~~~~~------~~~---~~~~~~~fa~~v~~~f~~g~s~~~~~~~~~~DGiDiD~E~p~--------------~~~~ 159 (298)
||||+.+. .|+ +++.|++|+++++ +++++|+|||||||||+|. .++|
T Consensus 68 iGG~~~s~~~~~~~~f~~~~~~~~R~~Fi~si~----------~~~~~~~fDGidiDwE~P~~~~~~~~~~~~~~d~~n~ 137 (345)
T cd02878 68 FGGWDFSTSPSTYQIFRDAVKPANRDTFANNVV----------NFVNKYNLDGVDFDWEYPGAPDIPGIPAGDPDDGKNY 137 (345)
T ss_pred EeCCCCCCCCccchhhHhhcCHHHHHHHHHHHH----------HHHHHcCCCceeecccCCcccCCCCCCCCChHHHHHH
Confidence 99997432 132 6788999999997 6789999999999999984 2589
Q ss_pred HHHHHHHHhhhhCCCceEEEEcCCCCC--CcchhhhhhhcCCCceEEeeecCCCCCC-----CC-C-----------CCh
Q 035598 160 DELARFLAGYSQKGKKVYVTAAPQCPF--PDAWIGNALKTGVFDYVWVQFYNNPPCQ-----YS-S-----------GNI 220 (298)
Q Consensus 160 ~~li~~LR~~~~~g~~~llT~Ap~~~~--~~~~~~~~l~~~~~D~invq~Yn~~~~~-----~~-~-----------~~~ 220 (298)
..|+++||+.+ +++++||+|+.+.. .+.+--..+ ..++||||||.||.++.. +. + .+.
T Consensus 138 ~~ll~elr~~l--~~~~~ls~a~~~~~~~~~~yd~~~l-~~~vD~i~vMtYD~~g~w~~~~~~~~p~~p~~~~~~~~~~~ 214 (345)
T cd02878 138 LEFLKLLKSKL--PSGKSLSIAAPASYWYLKGFPIKDM-AKYVDYIVYMTYDLHGQWDYGNKWASPGCPAGNCLRSHVNK 214 (345)
T ss_pred HHHHHHHHHHh--CcCcEEEEEcCCChhhhcCCcHHHH-HhhCcEEEEEeecccCCcCccCCcCCCCCCcccccccCCCc
Confidence 99999999986 34688998865421 011111223 589999999999987411 00 0 011
Q ss_pred hhHHHHHHHHhc-CCCCCeEEEeeecCC
Q 035598 221 GNLLNAWKQWTS-DIPANKIFLGLPASP 247 (298)
Q Consensus 221 ~~~~~~~~~~~~-g~p~~KlvlG~p~~~ 247 (298)
.+..++++.|.+ |+|++||+||+|++.
T Consensus 215 ~~~~~~v~~~~~~Gvp~~KlvlGip~YG 242 (345)
T cd02878 215 TETLDALSMITKAGVPSNKVVVGVASYG 242 (345)
T ss_pred hhHHHHHHHHHHcCCCHHHeEEeecccc
Confidence 235677888885 999999999999995
No 12
>cd02873 GH18_IDGF The IDGF's (imaginal disc growth factors) are a family of growth factors identified in insects that include at least five members, some of which are encoded by genes in a tight cluster. The IDGF's have an eight-stranded alpha/beta barrel fold and are related to the glycosyl hydrolase family 18 (GH18) chitinases, but they have an amino acid substitution known to abolish chitinase catalytic activity. IDGFs may have evolved from chitinases to gain new functions as growth factors, interacting with cell surface glycoproteins involved in growth-promoting processes.
Probab=99.98 E-value=2.7e-31 Score=256.70 Aligned_cols=204 Identities=17% Similarity=0.176 Sum_probs=139.7
Q ss_pred cEEEEeCCCCC----C-CCcccccCCCC--ccEEEEceeeecCCCCCccccCCCCCCCCCCCccchHHHHHHHHh--CCC
Q 035598 27 GIAIYWGQNGN----E-GTLKETCSTGN--YEYVILSFLATFGNGQTPMINLAGHCDPYSNGCTGLSSDIKSCQA--KGV 97 (298)
Q Consensus 27 ~vv~Y~g~~~~----~-~~l~~~~~~~~--~thii~AF~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~i~~~q~--~g~ 97 (298)
+++|||..|.. . ...++.++... ||||+|||+.+.+++. .+...+. .........+++..+|+ +++
T Consensus 1 ~vvcyy~~~a~~r~~~~~~~~~~i~~~~~~~THl~yaf~~i~~~~~--~~~~~~~---~~~~~~~~~~~~~~lk~~~p~l 75 (413)
T cd02873 1 KLVCYYDSKSYLREGLAKMSLEDLEPALQFCTHLVYGYAGIDADTY--KIKSLNE---DLDLDKSHYRAITSLKRKYPHL 75 (413)
T ss_pred CEEEEecchhhcCCCCCeeCHHHcCCccccCCeEEEEEEEEeCCCC--EEEecCc---ccchhhhHHHHHHHHHhhCCCC
Confidence 58999987632 1 22578888765 9999999999876532 1211111 00111233456666654 599
Q ss_pred eEEEEEeCCCCC------CC----CCCHHHHHHHHHHHHHhhcCCCCCCcCCCCCccCeEeeecCCCC------------
Q 035598 98 KVLLSLGGAAGS------YS----LTSTQDAKQVATYLWNNFLGGHSSSRPLGPAVLDGIDLDIEGGT------------ 155 (298)
Q Consensus 98 KVllSiGG~~~~------~~----~~~~~~~~~fa~~v~~~f~~g~s~~~~~~~~~~DGiDiD~E~p~------------ 155 (298)
|||||||||+.+ .. +++++.|++|+++++ +++++|+|||||||||||.
T Consensus 76 KvllSiGGw~~~~~~~~s~~fs~~~~~~~~R~~Fi~siv----------~~l~~~~fDGidiDWEyP~~~~~~~~g~~~~ 145 (413)
T cd02873 76 KVLLSVGGDRDTDEEGENEKYLLLLESSESRNAFINSAH----------SLLKTYGFDGLDLAWQFPKNKPKKVRGTFGS 145 (413)
T ss_pred eEEEeecCCCCCCCcccchhhHHHhCCHHHHHHHHHHHH----------HHHHHcCCCCeEeeeeCCCCcccccccccch
Confidence 999999999732 11 356888999999997 6799999999999999984
Q ss_pred ----------------------chhHHHHHHHHHhhhhCCCceEEEEcCCCCCCc-chhh-hhhhcCCCceEEeeecCCC
Q 035598 156 ----------------------SQHWDELARFLAGYSQKGKKVYVTAAPQCPFPD-AWIG-NALKTGVFDYVWVQFYNNP 211 (298)
Q Consensus 156 ----------------------~~~~~~li~~LR~~~~~g~~~llT~Ap~~~~~~-~~~~-~~l~~~~~D~invq~Yn~~ 211 (298)
.++|+.|+++||+.++ ..+++||+|+...... ..++ +.+ .+++||||||.||.+
T Consensus 146 ~~~~~~~~~~g~~~~~~~~~~d~~nf~~Ll~elr~~l~-~~~~~ls~av~~~~~~~~~~d~~~l-~~~vD~inlMtYD~~ 223 (413)
T cd02873 146 AWHSFKKLFTGDSVVDEKAAEHKEQFTALVRELKNALR-PDGLLLTLTVLPHVNSTWYFDVPAI-ANNVDFVNLATFDFL 223 (413)
T ss_pred hhhhhhcccccccccCCCChhHHHHHHHHHHHHHHHhc-ccCcEEEEEecCCchhccccCHHHH-hhcCCEEEEEEeccc
Confidence 1579999999999874 2457888764321111 1111 233 589999999999976
Q ss_pred CCC-------CC-C---C----ChhhHHHHHHHHhc-CCCCCeEEEeeecCC
Q 035598 212 PCQ-------YS-S---G----NIGNLLNAWKQWTS-DIPANKIFLGLPASP 247 (298)
Q Consensus 212 ~~~-------~~-~---~----~~~~~~~~~~~~~~-g~p~~KlvlG~p~~~ 247 (298)
+.. .. + . ...++..+++.|.. |+|++||+||+|++.
T Consensus 224 g~~~~~~~~~~~apL~~~~~~~~~~~v~~~v~~~~~~gvp~~KlvlGip~YG 275 (413)
T cd02873 224 TPERNPEEADYTAPIYELYERNPHHNVDYQVKYWLNQGTPASKLNLGIATYG 275 (413)
T ss_pred CCCCCCCccCcCCccCCCccccccccHHHHHHHHHHcCCCHHHeEEEEecce
Confidence 411 00 0 0 01256778888975 999999999999983
No 13
>cd02872 GH18_chitolectin_chitotriosidase This conserved domain family includes a large number of catalytically inactive chitinase-like lectins (chitolectins) including YKL-39, YKL-40 (HCGP39), YM1, oviductin, and AMCase (acidic mammalian chitinase), as well as catalytically active chitotriosidases. The conserved domain is an eight-stranded alpha/beta barrel fold belonging to the family 18 glycosyl hydrolases. The fold has a pronounced active-site cleft at the C-terminal end of the beta-barrel. The chitolectins lack a key active site glutamate (the proton donor required for hydrolytic activity) but retain highly conserved residues involved in oligosaccharide binding. Chitotriosidase is a chitinolytic enzyme expressed in maturing macrophages, which suggests that it plays a part in antimicrobial defense. Chitotriosidase hydrolyzes chitotriose, as well as colloidal chitin to yield chitobiose and is therefore considered an exochitinase. Chitotriosidase occurs in two major forms, the la
Probab=99.98 E-value=1.9e-31 Score=253.46 Aligned_cols=203 Identities=20% Similarity=0.238 Sum_probs=145.1
Q ss_pred EEEEeCCCCC--C---CCcccccCCCCccEEEEceeeecCCCCCccccCCCCCCCCCCCccchHHHHHHHHh--CCCeEE
Q 035598 28 IAIYWGQNGN--E---GTLKETCSTGNYEYVILSFLATFGNGQTPMINLAGHCDPYSNGCTGLSSDIKSCQA--KGVKVL 100 (298)
Q Consensus 28 vv~Y~g~~~~--~---~~l~~~~~~~~~thii~AF~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~i~~~q~--~g~KVl 100 (298)
|+|||..|.. . ...++.++.++||||+|+|+.+..+|.....+ +..+......+.+..+|+ +++|||
T Consensus 1 v~~y~~~w~~~~~~~~~~~~~~i~~~~~Thv~y~f~~i~~~g~~~~~~------~~~d~~~~~~~~~~~lk~~~p~lkvl 74 (362)
T cd02872 1 VVCYFTNWAQYRPGNGKFVPENIDPFLCTHIIYAFAGLNPDGNIIILD------EWNDIDLGLYERFNALKEKNPNLKTL 74 (362)
T ss_pred CEEEECcchhcCCCCCCcChhHCCcccCCEEEEeeEEECCCCCEEecC------chhhhhhhHHHHHHHHHhhCCCceEE
Confidence 5899988742 1 23577788999999999999988766432211 111112345566666665 589999
Q ss_pred EEEeCCCC-CCC----CCCHHHHHHHHHHHHHhhcCCCCCCcCCCCCccCeEeeecCCCCc--------hhHHHHHHHHH
Q 035598 101 LSLGGAAG-SYS----LTSTQDAKQVATYLWNNFLGGHSSSRPLGPAVLDGIDLDIEGGTS--------QHWDELARFLA 167 (298)
Q Consensus 101 lSiGG~~~-~~~----~~~~~~~~~fa~~v~~~f~~g~s~~~~~~~~~~DGiDiD~E~p~~--------~~~~~li~~LR 167 (298)
||||||+. +.. +.+++.|++|+++++ +++++|+|||||||||+|.. ++|..|+++||
T Consensus 75 isiGG~~~~~~~f~~~~~~~~~r~~fi~~iv----------~~l~~~~~DGidiDwE~p~~~~~~~~d~~~~~~ll~~lr 144 (362)
T cd02872 75 LAIGGWNFGSAKFSAMAASPENRKTFIKSAI----------AFLRKYGFDGLDLDWEYPGQRGGPPEDKENFVTLLKELR 144 (362)
T ss_pred EEEcCCCCCcchhHHHhCCHHHHHHHHHHHH----------HHHHHcCCCCeeeeeeccccCCCCHHHHHHHHHHHHHHH
Confidence 99999973 322 356788999999997 67899999999999999862 58999999999
Q ss_pred hhhh-CCCceEEEEcCCCCCC---cchhhhhhhcCCCceEEeeecCCCCCC---CC---C-----CC-----hhhHHHHH
Q 035598 168 GYSQ-KGKKVYVTAAPQCPFP---DAWIGNALKTGVFDYVWVQFYNNPPCQ---YS---S-----GN-----IGNLLNAW 227 (298)
Q Consensus 168 ~~~~-~g~~~llT~Ap~~~~~---~~~~~~~l~~~~~D~invq~Yn~~~~~---~~---~-----~~-----~~~~~~~~ 227 (298)
+.++ .+++++||+|+.+... ..+--+.+ .+++|||+||.||.++-. .. + .+ ..++..++
T Consensus 145 ~~l~~~~~~~~ls~av~~~~~~~~~~~d~~~l-~~~vD~v~vmtYD~~~~~~~~~g~~spl~~~~~~~~~~~~~~v~~~v 223 (362)
T cd02872 145 EAFEPEAPRLLLTAAVSAGKETIDAAYDIPEI-SKYLDFINVMTYDFHGSWEGVTGHNSPLYAGSADTGDQKYLNVDYAI 223 (362)
T ss_pred HHHHhhCcCeEEEEEecCChHHHhhcCCHHHH-hhhcceEEEecccCCCCCCCCCCCCCCCCCCCCCccccccccHHHHH
Confidence 9974 2347999998765311 11111223 589999999999976410 00 0 00 12467788
Q ss_pred HHHhc-CCCCCeEEEeeecCC
Q 035598 228 KQWTS-DIPANKIFLGLPASP 247 (298)
Q Consensus 228 ~~~~~-g~p~~KlvlG~p~~~ 247 (298)
+.|.+ |+|++||+||+|++.
T Consensus 224 ~~~~~~gvp~~KlvlGlp~YG 244 (362)
T cd02872 224 KYWLSKGAPPEKLVLGIPTYG 244 (362)
T ss_pred HHHHHcCCCHHHeEecccccc
Confidence 88975 899999999999994
No 14
>cd00598 GH18_chitinase-like The GH18 (glycosyl hydrolase, family 18) type II chitinases hydrolyze chitin, an abundant polymer of beta-1,4-linked N-acetylglucosamine (GlcNAc) which is a major component of the cell wall of fungi and the exoskeleton of arthropods. Chitinases have been identified in viruses, bacteria, fungi, protozoan parasites, insects, and plants. The structure of the GH18 domain is an eight-stranded beta/alpha barrel with a pronounced active-site cleft at the C-terminal end of the beta-barrel. The GH18 family includes chitotriosidase, chitobiase, hevamine, zymocin-alpha, narbonin, SI-CLP (stabilin-1 interacting chitinase-like protein), IDGF (imaginal disc growth factor), CFLE (cortical fragment-lytic enzyme) spore hydrolase, the type III and type V plant chitinases, the endo-beta-N-acetylglucosaminidases, and the chitolectins. The GH85 (glycosyl hydrolase, family 85) ENGases (endo-beta-N-acetylglucosaminidases) are closely related to the GH18 chitinases and are inclu
Probab=99.97 E-value=2.5e-31 Score=233.32 Aligned_cols=195 Identities=23% Similarity=0.282 Sum_probs=146.5
Q ss_pred EEEEeCCCCCCCC-cccccCCCCccEEEEceeeecCCCCCccccCCCCCCCCCCCccchHHHHHHHHhC--CCeEEEEEe
Q 035598 28 IAIYWGQNGNEGT-LKETCSTGNYEYVILSFLATFGNGQTPMINLAGHCDPYSNGCTGLSSDIKSCQAK--GVKVLLSLG 104 (298)
Q Consensus 28 vv~Y~g~~~~~~~-l~~~~~~~~~thii~AF~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~i~~~q~~--g~KVllSiG 104 (298)
++|||.+|..... .++.++.+.||||+++|+.+.+++.... . .........+.++.+|++ |+||++|||
T Consensus 1 vv~y~~~w~~~~~~~~~~~~~~~~thvi~~f~~v~~~~~~~~-~-------~~~~~~~~~~~i~~l~~~~~g~kv~~sig 72 (210)
T cd00598 1 VICYYDGWSSGRGPDPTDIPLSLCTHIIYAFAEISSDGSLNL-F-------GDKSEEPLKGALEELASKKPGLKVLISIG 72 (210)
T ss_pred CEEEEccccccCCCChhhCCcccCCEEEEeeEEECCCCCEec-c-------cCcccHHHHHHHHHHHHhCCCCEEEEEEc
Confidence 5899998754322 2567789999999999999877654211 0 011234566788888876 999999999
Q ss_pred CCCCCCC---CCCHHHHHHHHHHHHHhhcCCCCCCcCCCCCccCeEeeecCCCCc------hhHHHHHHHHHhhhhCCCc
Q 035598 105 GAAGSYS---LTSTQDAKQVATYLWNNFLGGHSSSRPLGPAVLDGIDLDIEGGTS------QHWDELARFLAGYSQKGKK 175 (298)
Q Consensus 105 G~~~~~~---~~~~~~~~~fa~~v~~~f~~g~s~~~~~~~~~~DGiDiD~E~p~~------~~~~~li~~LR~~~~~g~~ 175 (298)
|+..... ..+++.|++|+++++ +++++|+|||||||||+|.. +++..|+++||+.+. .++
T Consensus 73 g~~~~~~~~~~~~~~~~~~f~~~~~----------~~v~~~~~DGidiD~E~~~~~~~~~~~~~~~ll~~lr~~l~-~~~ 141 (210)
T cd00598 73 GWTDSSPFTLASDPASRAAFANSLV----------SFLKTYGFDGVDIDWEYPGAADNSDRENFITLLRELRSALG-AAN 141 (210)
T ss_pred CCCCCCCchhhcCHHHHHHHHHHHH----------HHHHHcCCCceEEeeeCCCCcCccHHHHHHHHHHHHHHHhc-ccC
Confidence 9985443 567888999999997 67899999999999999863 578999999999863 237
Q ss_pred eEEEEcCCCCCCcc---hhhhhhhcCCCceEEeeecCCCCCCCCCCChhhHHHHHHHHhcCCCCCeEEEeeecCCCCCCC
Q 035598 176 VYVTAAPQCPFPDA---WIGNALKTGVFDYVWVQFYNNPPCQYSSGNIGNLLNAWKQWTSDIPANKIFLGLPASPAAAGS 252 (298)
Q Consensus 176 ~llT~Ap~~~~~~~---~~~~~l~~~~~D~invq~Yn~~~~~~~~~~~~~~~~~~~~~~~g~p~~KlvlG~p~~~~~a~~ 252 (298)
++||+||++..... +.-..+ .+++||+++|+|| |++|+|++
T Consensus 142 ~~ls~a~~~~~~~~~~~~~~~~l-~~~vD~v~vm~Yd-----------------------------l~~g~~~~------ 185 (210)
T cd00598 142 YLLTIAVPASYFDLGYAYDVPAI-GDYVDFVNVMTYD-----------------------------LVLGVPFY------ 185 (210)
T ss_pred cEEEEEecCChHHhhccCCHHHH-HhhCCEEEEeeec-----------------------------ccccchhh------
Confidence 99999988753321 111233 5899999999997 99999997
Q ss_pred CCcChHHHHHHHHHhhhcCCCCceEEEEecccc
Q 035598 253 GFIPTADLISKVLPAIKGSAKYGGVMLWSKYYD 285 (298)
Q Consensus 253 gy~~~~~l~~~~~~~~~~~~~~gGvm~W~~~~d 285 (298)
.+... ++.++++ ++||||+|++++|
T Consensus 186 ------s~~~k-~~~~~~~-~~gGv~~w~~~~d 210 (210)
T cd00598 186 ------SLGAK-AKYAKQK-GLGGVMIWELDQD 210 (210)
T ss_pred ------hHHHH-HHHHHHc-CCceEEEEeccCC
Confidence 34322 3444544 9999999999876
No 15
>smart00636 Glyco_18 Glycosyl hydrolase family 18.
Probab=99.97 E-value=2.8e-30 Score=242.65 Aligned_cols=202 Identities=22% Similarity=0.277 Sum_probs=145.1
Q ss_pred cEEEEeCCCCCCC--CcccccCCCCccEEEEceeeecCCCCCccccCCCCCCCCCCCccchHHHHHHHHh--CCCeEEEE
Q 035598 27 GIAIYWGQNGNEG--TLKETCSTGNYEYVILSFLATFGNGQTPMINLAGHCDPYSNGCTGLSSDIKSCQA--KGVKVLLS 102 (298)
Q Consensus 27 ~vv~Y~g~~~~~~--~l~~~~~~~~~thii~AF~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~i~~~q~--~g~KVllS 102 (298)
+++|||..|...+ ..++.++..+||||+|+|+.+..+|. +.+.+.. . .......++.+++ +++|||+|
T Consensus 1 ~~~~Y~~~w~~~~~~~~~~~~~~~~~thv~~~~~~~~~~g~---~~~~~~~---~--~~~~~~~~~~l~~~~~~~kvl~s 72 (334)
T smart00636 1 RVVGYFTNWGVYGRNFPVDDIPASKLTHIIYAFANIDPDGT---VTIGDEW---A--DIGNFGQLKALKKKNPGLKVLLS 72 (334)
T ss_pred CEEEEECchhccCCCCChhHCCcccCcEEEEeeeeeCCCCC---EeeCCcc---h--hhhhHHHHHHHHHhCCCCEEEEE
Confidence 5899998875322 35667789999999999999987664 2222110 0 0012344666665 49999999
Q ss_pred EeCCCCCCC----CCCHHHHHHHHHHHHHhhcCCCCCCcCCCCCccCeEeeecCCCCc-----hhHHHHHHHHHhhhhC-
Q 035598 103 LGGAAGSYS----LTSTQDAKQVATYLWNNFLGGHSSSRPLGPAVLDGIDLDIEGGTS-----QHWDELARFLAGYSQK- 172 (298)
Q Consensus 103 iGG~~~~~~----~~~~~~~~~fa~~v~~~f~~g~s~~~~~~~~~~DGiDiD~E~p~~-----~~~~~li~~LR~~~~~- 172 (298)
||||+.+.. +.+++.|++|+++++ +++++|+|||||||||+|.. ++|..|+++||+.++.
T Consensus 73 vgg~~~s~~f~~~~~~~~~r~~fi~~i~----------~~~~~~~~DGidiDwE~~~~~~~d~~~~~~ll~~lr~~l~~~ 142 (334)
T smart00636 73 IGGWTESDNFSSMLSDPASRKKFIDSIV----------SFLKKYGFDGIDIDWEYPGARGDDRENYTALLKELREALDKE 142 (334)
T ss_pred EeCCCCCcchhHHHCCHHHHHHHHHHHH----------HHHHHcCCCeEEECCcCCCCCccHHHHHHHHHHHHHHHHHHh
Confidence 999875332 356788999999997 67899999999999999864 4799999999998742
Q ss_pred ---CCceEEEEcCCCCCCc--chhh--hhhhcCCCceEEeeecCCCCC-C--CCCCC----------hhhHHHHHHHHh-
Q 035598 173 ---GKKVYVTAAPQCPFPD--AWIG--NALKTGVFDYVWVQFYNNPPC-Q--YSSGN----------IGNLLNAWKQWT- 231 (298)
Q Consensus 173 ---g~~~llT~Ap~~~~~~--~~~~--~~l~~~~~D~invq~Yn~~~~-~--~~~~~----------~~~~~~~~~~~~- 231 (298)
+++++||+|+.+.... .... ..+ ..++||++||.||.++. . ..+.+ ..++..+++.|.
T Consensus 143 ~~~~~~~~lsi~v~~~~~~~~~~~~~~~~l-~~~vD~v~vm~YD~~~~~~~~~g~~spl~~~~~~~~~~~v~~~v~~~~~ 221 (334)
T smart00636 143 GAEGKGYLLTIAVPAGPDKIDKGYGDLPAI-AKYLDFINLMTYDFHGAWSNPTGHNAPLYAGPGDPEKYNVDYAVKYYLC 221 (334)
T ss_pred cccCCceEEEEEecCChHHHHhhhhhHHHH-HhhCcEEEEeeeccCCCCCCCCCCCCcCCCCCCCCCCccHHHHHHHHHH
Confidence 4689999998753211 1111 233 48999999999997741 0 01101 114677889998
Q ss_pred cCCCCCeEEEeeecCC
Q 035598 232 SDIPANKIFLGLPASP 247 (298)
Q Consensus 232 ~g~p~~KlvlG~p~~~ 247 (298)
.|+|++||+||+|++.
T Consensus 222 ~gvp~~KlvlGip~YG 237 (334)
T smart00636 222 KGVPPSKLVLGIPFYG 237 (334)
T ss_pred cCCCHHHeEEeecccc
Confidence 4999999999999995
No 16
>PF00704 Glyco_hydro_18: Glycosyl hydrolases family 18; InterPro: IPR001223 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Some members of this family, GH18 from CAZY, belong to the chitinase class II group which includes chitinase, chitodextrinase and the killer toxin of Kluyveromyces lactis. The chitinases hydrolyse chitin oligosaccharides. The family also includes various glycoproteins from mammals; cartilage glycoprotein and the oviduct-specific glycoproteins are two examples.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 1ITX_A 3ALG_A 3ALF_A 1NAR_A 3QOK_A 3G6L_A 3G6M_A 2DT1_A 2B31_A 2O92_A ....
Probab=99.97 E-value=4.3e-31 Score=247.74 Aligned_cols=207 Identities=22% Similarity=0.259 Sum_probs=139.9
Q ss_pred CcEEEEeCCCC--CCC-CcccccCCCCccEEEEceeeecCCCCCccccCCCCCCCCCCCccch---HHHHHHHHhCCCeE
Q 035598 26 GGIAIYWGQNG--NEG-TLKETCSTGNYEYVILSFLATFGNGQTPMINLAGHCDPYSNGCTGL---SSDIKSCQAKGVKV 99 (298)
Q Consensus 26 ~~vv~Y~g~~~--~~~-~l~~~~~~~~~thii~AF~~~~~~g~~~~~~~~~~~~~~~~~~~~l---~~~i~~~q~~g~KV 99 (298)
.+|+|||.+|. .++ ...+.++...||||+|+|+.+..++........... ....... .+.++ +|.+|+||
T Consensus 1 ~~vv~Y~~~~~~~~~~~~~~~~i~~~~~t~i~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~-~~~~~~kv 76 (343)
T PF00704_consen 1 KRVVGYYSNWNSYRPGSYKIEDIPWSKCTHIVYAFAGIDPNGNLNYPWNFDDD---NDGDSSGFKNLKELK-AKNPGVKV 76 (343)
T ss_dssp BEEEEEEEGGGGSSTGCSHGGGSHTTTESEEEEEEEEEETTTTEEEGTTTECS---STTHHHHHHHHHHHH-HHHTT-EE
T ss_pred CEEEEEECCcCCCCCCCCCHHHCCcccCCEEEEEeeeecCCCceecccccccc---cCccccchhHHHHHH-hhccCceE
Confidence 37999999874 233 246677779999999999999877643211000010 0111222 34444 56679999
Q ss_pred EEEEeCCCCCC-CC----CCHHHHHHHHHHHHHhhcCCCCCCcCCCCCccCeEeeecCCCCc-------hhHHHHHHHHH
Q 035598 100 LLSLGGAAGSY-SL----TSTQDAKQVATYLWNNFLGGHSSSRPLGPAVLDGIDLDIEGGTS-------QHWDELARFLA 167 (298)
Q Consensus 100 llSiGG~~~~~-~~----~~~~~~~~fa~~v~~~f~~g~s~~~~~~~~~~DGiDiD~E~p~~-------~~~~~li~~LR 167 (298)
|+||||+..+. .+ .+++.|++|+++++ +++++|+|||||||||++.. .+|..|+++||
T Consensus 77 llsigg~~~~~~~~~~~~~~~~~r~~f~~~i~----------~~l~~y~~DGidiD~e~~~~~~~~~~~~~~~~~l~~L~ 146 (343)
T PF00704_consen 77 LLSIGGWGMSSDGFSQLLSNPAKRQNFINNIV----------SFLKKYGFDGIDIDWEYPSSSGDPQDKDNYTAFLKELR 146 (343)
T ss_dssp EEEEEETTSSHHHHHHHHHSHHHHHHHHHHHH----------HHHHHHT-SEEEEEESSTTSTSSTTHHHHHHHHHHHHH
T ss_pred EEEeccccccccccccccccHHHHHHHHHhhh----------hhhcccCcceeeeeeeeccccccchhhhhhhhhhhhhh
Confidence 99999996443 32 36778999999997 67999999999999999953 58999999999
Q ss_pred hhhhCC----CceEEEEc-CCCCCCcchhh-hhhhcCCCceEEeeecCCCCC--C---C-CC----C---ChhhHHHHHH
Q 035598 168 GYSQKG----KKVYVTAA-PQCPFPDAWIG-NALKTGVFDYVWVQFYNNPPC--Q---Y-SS----G---NIGNLLNAWK 228 (298)
Q Consensus 168 ~~~~~g----~~~llT~A-p~~~~~~~~~~-~~l~~~~~D~invq~Yn~~~~--~---~-~~----~---~~~~~~~~~~ 228 (298)
+.++.- ++++||+| |..+.....+. ..+ ..++|||++|.||..+. . . .+ . ...++..+++
T Consensus 147 ~~l~~~~~~~~~~~ls~a~p~~~~~~~~~~~~~l-~~~vD~v~~m~yD~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~v~ 225 (343)
T PF00704_consen 147 KALKRANRSGKGYILSVAVPPSPDYYDKYDYKEL-AQYVDYVNLMTYDYHGPWSDVTGPNAPLYDSSWDSNYYSVDSAVQ 225 (343)
T ss_dssp HHHHHHHHHHSTSEEEEEEECSHHHHTTHHHHHH-HTTSSEEEEETTSSSSTTSSBETTSSSSSHTTTSGTSSSHHHHHH
T ss_pred hhhcccccccceeEEeeccccccccccccccccc-cccccccccccccCCCCcccccccccccccCCccCCCceeeeehh
Confidence 876311 37899999 44322111111 122 48899999999987641 0 0 00 0 1124567889
Q ss_pred HHhc-CCCCCeEEEeeecCC
Q 035598 229 QWTS-DIPANKIFLGLPASP 247 (298)
Q Consensus 229 ~~~~-g~p~~KlvlG~p~~~ 247 (298)
.|.. |+|++||+||+|++.
T Consensus 226 ~~~~~g~p~~Kl~lglp~yg 245 (343)
T PF00704_consen 226 YWIKAGVPPSKLVLGLPFYG 245 (343)
T ss_dssp HHHHTTSTGGGEEEEEESEE
T ss_pred hhccccCChhheeecCCccc
Confidence 9986 899999999999884
No 17
>KOG2806 consensus Chitinase [Carbohydrate transport and metabolism]
Probab=99.96 E-value=3.3e-28 Score=236.22 Aligned_cols=201 Identities=18% Similarity=0.159 Sum_probs=136.0
Q ss_pred cEEEEeCCCCCCCCcccccCCCCccEEEEceeeecCCCCCccccCCCCCCCCCCCccchHHHHHHHHh--CCCeEEEEEe
Q 035598 27 GIAIYWGQNGNEGTLKETCSTGNYEYVILSFLATFGNGQTPMINLAGHCDPYSNGCTGLSSDIKSCQA--KGVKVLLSLG 104 (298)
Q Consensus 27 ~vv~Y~g~~~~~~~l~~~~~~~~~thii~AF~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~i~~~q~--~g~KVllSiG 104 (298)
++++|+.++. .....+..+..+|||++|||+.+..++.. .+... . ....+.+..+.+++ +++|+|||||
T Consensus 59 ~~~~~~~~~~-~~~~~~~~~~~~~TH~vfafa~~~~~~~~---~~~~~--~---~~~~f~~~~~~~k~~n~~vK~llSIG 129 (432)
T KOG2806|consen 59 SIVGYYPSRI-GPETLEDQDPLKCTHLVYAFAKMKRVGYV---VFCGA--R---TMNRFSSYNQTAKSSNPTVKVMISIG 129 (432)
T ss_pred eeEEEeCCCC-CCCCccccChhhcCcceEEEeeecccccE---Eeccc--h---hhhhhHHHHHHHHhhCCCceEEEEec
Confidence 3444443322 13345566899999999999998766532 11110 0 12355666666653 5899999999
Q ss_pred CC-CCCCC----CCCHHHHHHHHHHHHHhhcCCCCCCcCCCCCccCeEeeecCCC--C---chhHHHHHHHHHhhhh-CC
Q 035598 105 GA-AGSYS----LTSTQDAKQVATYLWNNFLGGHSSSRPLGPAVLDGIDLDIEGG--T---SQHWDELARFLAGYSQ-KG 173 (298)
Q Consensus 105 G~-~~~~~----~~~~~~~~~fa~~v~~~f~~g~s~~~~~~~~~~DGiDiD~E~p--~---~~~~~~li~~LR~~~~-~g 173 (298)
|| .++.. .++++.|+.|+++++ +++++|+|||+|||||+| . ..+|..|+++||+.++ ..
T Consensus 130 G~~~ns~~fs~~~s~~~~r~~FI~Sii----------~fl~~~~fDGvDL~We~P~~~~~d~~~~~~~i~elr~~~~~~~ 199 (432)
T KOG2806|consen 130 GSHGNSGLFSLVLSDRMIRAKFIESVV----------SFIKDYGFDGVDLAWEWPLFTPSDQLEFSRFIQELRSAFARET 199 (432)
T ss_pred CCCCCccchhhhhcChHHHHHHHHHHH----------HHHHHcCCCceeeeeECCCCchhhHHHHHHHHHHHHHHHHHHh
Confidence 99 54433 356789999999997 789999999999999999 4 2689999999999873 11
Q ss_pred C-----ceEEEEcCCCCC---Ccchh-hhhhhcCCCceEEeeecCCCCC-----CCCC------C-----ChhhHHHHHH
Q 035598 174 K-----KVYVTAAPQCPF---PDAWI-GNALKTGVFDYVWVQFYNNPPC-----QYSS------G-----NIGNLLNAWK 228 (298)
Q Consensus 174 ~-----~~llT~Ap~~~~---~~~~~-~~~l~~~~~D~invq~Yn~~~~-----~~~~------~-----~~~~~~~~~~ 228 (298)
+ ..+|+++...+. -+..+ -..+ .+++||||||.||.++- ...+ + ...++...++
T Consensus 200 ~~~~~~~~~l~~~v~~~~~~~~~~~ydi~~i-~~~~DfiNi~syDf~gpw~~~~~tGp~aPl~~~~~~~~~~~Nvd~~~k 278 (432)
T KOG2806|consen 200 LKSPDTAKVLEAVVADSKQSAYSDGYDYENL-SKYVDFINIMSYDYYGPWSLPCFTGPPSPLYKGPSMTNPKMNVDSLLK 278 (432)
T ss_pred hccCCccceeeeccccCccchhhccCCHHHH-HhhCCeEEEecccccCCCcCCCcCCCCcccCCCCcccccCcchhhhHH
Confidence 1 124555544331 11111 1223 48999999999998751 1111 0 0115667889
Q ss_pred HHhc-CCCCCeEEEeeecCC
Q 035598 229 QWTS-DIPANKIFLGLPASP 247 (298)
Q Consensus 229 ~~~~-g~p~~KlvlG~p~~~ 247 (298)
+|.. +.|++|++||+|++.
T Consensus 279 y~~~~~~~~~Kl~~gip~yg 298 (432)
T KOG2806|consen 279 YWTEKGLPPSKLVLALPFYG 298 (432)
T ss_pred HHhhcCCCchheEEEEecce
Confidence 9986 999999999999984
No 18
>cd02876 GH18_SI-CLP Stabilin-1 interacting chitinase-like protein (SI-CLP) is a eukaryotic chitinase-like protein of unknown function that interacts with the endocytic/sorting transmembrane receptor stabilin-1 and is secreted from the lysosome. SI-CLP has a glycosyl hydrolase family 18 (GH18) domain but lacks a chitin-binding domain. The catalytic amino acids of the GH18 domain are not conserved in SI-CLP, similar to the chitolectins YKL-39, YKL-40, and YM1/2. Human SI-CLP is sorted to late endosomes and secretory lysosomes in alternatively activated macrophages.
Probab=99.95 E-value=2e-27 Score=222.52 Aligned_cols=201 Identities=16% Similarity=0.119 Sum_probs=137.0
Q ss_pred cEEEEeCCCCCCCCcccccCCCCccEEEEceeeecCCCCCccccCCCCCCCCCCCccchHHHHHHHHh--CCCeEE--EE
Q 035598 27 GIAIYWGQNGNEGTLKETCSTGNYEYVILSFLATFGNGQTPMINLAGHCDPYSNGCTGLSSDIKSCQA--KGVKVL--LS 102 (298)
Q Consensus 27 ~vv~Y~g~~~~~~~l~~~~~~~~~thii~AF~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~i~~~q~--~g~KVl--lS 102 (298)
.++|||..|...+..+..+...+||||+++|+.+.++|+.- ...+..+ .-...++.+|+ +++||| ++
T Consensus 4 ~~~~y~~~W~~~~~~~~~~~~~~lthv~~~f~~i~~~g~~~--~~~~~~~-------~~~~~~~~lk~~~~~lkvlp~i~ 74 (318)
T cd02876 4 PVLGYVTPWNSHGYDVAKKFAAKFTHVSPVWLQIKRKGNKF--VIEGTHD-------IDKGWIEEVRKANKNIKILPRVL 74 (318)
T ss_pred ceEEEEcCcCccchHHHHHHhccCCEecceEEEEecCCCee--eeecCcc-------hhhHHHHHHHhhCCCcEEEeEEE
Confidence 57899998865444445567889999999999987765421 1111100 00123444443 589999 77
Q ss_pred EeCCCCC-C--CCCCHHHHHHHHHHHHHhhcCCCCCCcCCCCCccCeEeee-cCCCCc-------hhHHHHHHHHHhhhh
Q 035598 103 LGGAAGS-Y--SLTSTQDAKQVATYLWNNFLGGHSSSRPLGPAVLDGIDLD-IEGGTS-------QHWDELARFLAGYSQ 171 (298)
Q Consensus 103 iGG~~~~-~--~~~~~~~~~~fa~~v~~~f~~g~s~~~~~~~~~~DGiDiD-~E~p~~-------~~~~~li~~LR~~~~ 171 (298)
+|||+.+ + -+++++.|++|++++. +++++|+||||||| ||+|.. ++|..|+++||+.++
T Consensus 75 ~gg~~~~~f~~~~~~~~~R~~fi~s~~----------~~~~~~~~DGidiD~we~p~~~~~~~d~~~~~~~l~el~~~l~ 144 (318)
T cd02876 75 FEGWSYQDLQSLLNDEQEREKLIKLLV----------TTAKKNHFDGIVLEVWSQLAAYGVPDKRKELIQLVIHLGETLH 144 (318)
T ss_pred ECCCCHHHHHHHHcCHHHHHHHHHHHH----------HHHHHcCCCcEEEechhhhcccCCHHHHHHHHHHHHHHHHHHh
Confidence 8999743 2 2567889999999997 78999999999999 999853 589999999999874
Q ss_pred -CCCceEEEEcCCCCC--Ccchhh----hhhhcCCCceEEeeecCCCCCC-CCCC-ChhhHHHHHHHHhc-C-CCCCeEE
Q 035598 172 -KGKKVYVTAAPQCPF--PDAWIG----NALKTGVFDYVWVQFYNNPPCQ-YSSG-NIGNLLNAWKQWTS-D-IPANKIF 240 (298)
Q Consensus 172 -~g~~~llT~Ap~~~~--~~~~~~----~~l~~~~~D~invq~Yn~~~~~-~~~~-~~~~~~~~~~~~~~-g-~p~~Klv 240 (298)
.++.+.++++|.... +...+. +.+ .+++||++||.||.++.. ..+. ....+.++++.|.+ + +|++||+
T Consensus 145 ~~~~~l~~~v~~~~~~~~~~~~~~~~d~~~l-~~~vD~v~lMtYD~~~~~~~g~~apl~~v~~~v~~~~~~~~vp~~Klv 223 (318)
T cd02876 145 SANLKLILVIPPPREKGNQNGLFTRKDFEKL-APHVDGFSLMTYDYSSPQRPGPNAPLSWVRSCLELLLPESGKKRAKIL 223 (318)
T ss_pred hcCCEEEEEEcCccccccccccccccCHHHH-HhhccEEEEEeeccCCCCCCCCCCCcHHHHHHHHHHHhcCCCCHHHeE
Confidence 333344444443321 111111 223 589999999999987521 1111 12345677888875 4 9999999
Q ss_pred EeeecCC
Q 035598 241 LGLPASP 247 (298)
Q Consensus 241 lG~p~~~ 247 (298)
||+|+|.
T Consensus 224 lGip~YG 230 (318)
T cd02876 224 LGLNFYG 230 (318)
T ss_pred Eeccccc
Confidence 9999995
No 19
>cd06542 GH18_EndoS-like Endo-beta-N-acetylglucosaminidases are bacterial chitinases that hydrolyze the chitin core of various asparagine (N)-linked glycans and glycoproteins. The endo-beta-N-acetylglucosaminidases have a glycosyl hydrolase family 18 (GH18) catalytic domain. Some members also have an additional C-terminal glycosyl hydrolase family 20 (GH20) domain while others have an N-terminal domain of unknown function (pfam08522). Members of this family include endo-beta-N-acetylglucosaminidase S (EndoS) from Streptococcus pyogenes, EndoF1, EndoF2, EndoF3, and EndoH from Flavobacterium meningosepticum, and EndoE from Enterococcus faecalis. EndoS is a secreted endoglycosidase from Streptococcus pyogenes that specifically hydrolyzes the glycan on human IgG between two core N-acetylglucosamine residues. EndoE is a secreted endoglycosidase, encoded by the ndoE gene in Enterococcus faecalis, that hydrolyzes the glycan on human RNase B.
Probab=99.95 E-value=6.4e-27 Score=212.34 Aligned_cols=223 Identities=21% Similarity=0.174 Sum_probs=152.1
Q ss_pred cEEEEeCCCCCC-----CCcccccCCCCccEEEEceeeecCCCCCccccCCCCCCCCCCCccchHHHHHHHHhCCCeEEE
Q 035598 27 GIAIYWGQNGNE-----GTLKETCSTGNYEYVILSFLATFGNGQTPMINLAGHCDPYSNGCTGLSSDIKSCQAKGVKVLL 101 (298)
Q Consensus 27 ~vv~Y~g~~~~~-----~~l~~~~~~~~~thii~AF~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~i~~~q~~g~KVll 101 (298)
...|||..|.+. .++.+ .++.+|+|++.+..+..++... . ....+...+.|+.+|++|+|||+
T Consensus 2 ~~~~y~~~~~~~~~~~~~~l~~--~pds~D~v~lf~~~~~~~~~~~-~---------~~~~~~~~~~i~~l~~kG~KVl~ 69 (255)
T cd06542 2 ISFGYFEVWDDKGASLQESLLN--LPDSVDMVSLFAANINLDAATA-V---------QFLLTNKETYIRPLQAKGTKVLL 69 (255)
T ss_pred eEEEEEEecCCcCccccccccc--CCCcceEEEEcccccCcccccc-h---------hhhhHHHHHHHHHHhhCCCEEEE
Confidence 467999877542 23444 3789999999433332221110 0 01124567899999999999999
Q ss_pred EEeCCCCCCC---CCCHHHHHHHHHHHHHhhcCCCCCCcCCCCCccCeEeeecCCCCc----------hhHHHHHHHHHh
Q 035598 102 SLGGAAGSYS---LTSTQDAKQVATYLWNNFLGGHSSSRPLGPAVLDGIDLDIEGGTS----------QHWDELARFLAG 168 (298)
Q Consensus 102 SiGG~~~~~~---~~~~~~~~~fa~~v~~~f~~g~s~~~~~~~~~~DGiDiD~E~p~~----------~~~~~li~~LR~ 168 (298)
||||+..... ..+++.|++|+++++ +++++|+|||||||||++.. ++|..|+++||+
T Consensus 70 sigg~~~~~~~~~~~~~~~~~~fa~~l~----------~~v~~yglDGiDiD~E~~~~~~~~~~~~~~~~~~~lv~~Lr~ 139 (255)
T cd06542 70 SILGNHLGAGFANNLSDAAAKAYAKAIV----------DTVDKYGLDGVDFDDEYSGYGKNGTSQPSNEAFVRLIKELRK 139 (255)
T ss_pred EECCCCCCCCccccCCHHHHHHHHHHHH----------HHHHHhCCCceEEeeeecccCCCCCCcchHHHHHHHHHHHHH
Confidence 9999974333 367788999999997 56789999999999999853 579999999999
Q ss_pred hhhCCC-ceEEEEcCCCCCCcchhhhhhhcCCCceEEeeecCCCCCCCCCCChhhHHHHHHHHhcCCCCCeEEEeeecCC
Q 035598 169 YSQKGK-KVYVTAAPQCPFPDAWIGNALKTGVFDYVWVQFYNNPPCQYSSGNIGNLLNAWKQWTSDIPANKIFLGLPASP 247 (298)
Q Consensus 169 ~~~~g~-~~llT~Ap~~~~~~~~~~~~l~~~~~D~invq~Yn~~~~~~~~~~~~~~~~~~~~~~~g~p~~KlvlG~p~~~ 247 (298)
.+ ++ +++||+++....... ....+ .+++||+++|+|+.+. .... . .+.....++|++|+++|+++..
T Consensus 140 ~~--~~~~kllt~~~~~~~~~~-~~~~~-~~~vDyv~~~~y~~~~-~~~~-~------~~~~~~~g~~~~k~i~~~~~~~ 207 (255)
T cd06542 140 YM--GPTDKLLTIDGYGQALSN-DGEEV-SPYVDYVIYQYYGSSS-SSTQ-R------NWNTNSPKIPPEKMVYTESFEE 207 (255)
T ss_pred Hh--CcCCcEEEEEecCCchhc-CHHHH-HHhCCEEEeeccCCCC-ccCC-c------ccccccCCCCHHHceeeeeeec
Confidence 86 44 789999876432211 11223 4899999999999763 1111 1 1222234899999999999985
Q ss_pred CCCCCCCcChHHHHHHHHHhhhcCCCCceEEEEeccccCC
Q 035598 248 AAAGSGFIPTADLISKVLPAIKGSAKYGGVMLWSKYYDDQ 287 (298)
Q Consensus 248 ~~a~~gy~~~~~l~~~~~~~~~~~~~~gGvm~W~~~~d~~ 287 (298)
.. +..+...+. ...+.+.....+||+|+|.+..|-.
T Consensus 208 ~~---~~~~~~~~~-~~A~~~~~~~~~gG~~~y~~~~dy~ 243 (255)
T cd06542 208 EN---GGNSGSSAE-QYARWTPAKGGKGGIGTYALDRDYY 243 (255)
T ss_pred cc---CCCcchhHH-HHHhcCcccCceEEEEEEecCCCcc
Confidence 42 223333333 2334444444899999999998853
No 20
>cd02874 GH18_CFLE_spore_hydrolase Cortical fragment-lytic enzyme (CFLE) is a peptidoglycan hydrolase involved in bacterial endospore germination. CFLE is expressed as an inactive preprotein (called SleB) in the forespore compartment of sporulating cells. SleB translocates across the forespore inner membrane and is deposited as a mature enzyme in the cortex layer of the spore. As part of a sensory mechanism capable of initiating germination, CFLE degrades a spore-specific peptidoglycan constituent called muramic-acid delta-lactam that comprises the outer cortex. CFLE has a C-terminal glycosyl hydrolase family 18 (GH18) catalytic domain as well as two N-terminal LysM peptidoglycan-binding domains. In addition to SleB, this family includes YaaH, YdhD, and YvbX from Bacillus subtilis.
Probab=99.94 E-value=1.4e-25 Score=209.47 Aligned_cols=194 Identities=18% Similarity=0.274 Sum_probs=136.5
Q ss_pred CcEEEEeCCCCCCC--CcccccCCCCccEEEEceeeecCCCCCccccCCCCCCCCCCCccchHHHHHHHHhCCCeEEEEE
Q 035598 26 GGIAIYWGQNGNEG--TLKETCSTGNYEYVILSFLATFGNGQTPMINLAGHCDPYSNGCTGLSSDIKSCQAKGVKVLLSL 103 (298)
Q Consensus 26 ~~vv~Y~g~~~~~~--~l~~~~~~~~~thii~AF~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~i~~~q~~g~KVllSi 103 (298)
..+++|+..|...+ .+... ..++|||...+..+.++|. +. + ....+.++.+|++++|||++|
T Consensus 2 ~~~~g~~~~~~~~~~~~~~~~--~~~lt~v~p~w~~~~~~g~---~~--~---------~~~~~~~~~a~~~~~kv~~~i 65 (313)
T cd02874 2 IEVLGYYTPRNGSDYESLRAN--APYLTYIAPFWYGVDADGT---LT--G---------LPDERLIEAAKRRGVKPLLVI 65 (313)
T ss_pred ceEEEEEecCCCchHHHHHHh--cCCCCEEEEEEEEEcCCCC---CC--C---------CCCHHHHHHHHHCCCeEEEEE
Confidence 35889998765542 35555 4689999998888877663 11 1 112466778888999999999
Q ss_pred eCCCCC-C-------CCCCHHHHHHHHHHHHHhhcCCCCCCcCCCCCccCeEeeecCCCCc---hhHHHHHHHHHhhhhC
Q 035598 104 GGAAGS-Y-------SLTSTQDAKQVATYLWNNFLGGHSSSRPLGPAVLDGIDLDIEGGTS---QHWDELARFLAGYSQK 172 (298)
Q Consensus 104 GG~~~~-~-------~~~~~~~~~~fa~~v~~~f~~g~s~~~~~~~~~~DGiDiD~E~p~~---~~~~~li~~LR~~~~~ 172 (298)
||+++. + -+.+++.|++|+++++ +++++|+|||||||||++.. ++|..|+++||+.++
T Consensus 66 ~~~~~~~~~~~~~~~~l~~~~~r~~fi~~iv----------~~l~~~~~DGidiDwE~~~~~d~~~~~~fl~~lr~~l~- 134 (313)
T cd02874 66 TNLTNGNFDSELAHAVLSNPEARQRLINNIL----------ALAKKYGYDGVNIDFENVPPEDREAYTQFLRELSDRLH- 134 (313)
T ss_pred ecCCCCCCCHHHHHHHhcCHHHHHHHHHHHH----------HHHHHhCCCcEEEecccCCHHHHHHHHHHHHHHHHHhh-
Confidence 998621 1 1467888999999997 67899999999999999864 589999999999874
Q ss_pred CCceEEEEc--CCCCCC------cchhhhhhhcCCCceEEeeecCCCCCCCCCC--C-hhhHHHHHHHHhcCCCCCeEEE
Q 035598 173 GKKVYVTAA--PQCPFP------DAWIGNALKTGVFDYVWVQFYNNPPCQYSSG--N-IGNLLNAWKQWTSDIPANKIFL 241 (298)
Q Consensus 173 g~~~llT~A--p~~~~~------~~~~~~~l~~~~~D~invq~Yn~~~~~~~~~--~-~~~~~~~~~~~~~g~p~~Klvl 241 (298)
.++++||++ |..+.. ..+.-..+ .+++||++||.||.++....++ + ...+...++.+.+++|++||+|
T Consensus 135 ~~~~~lsv~~~p~~~~~~~~~~~~~~~~~~l-~~~vD~v~lm~YD~~~~~~~~gp~a~~~~~~~~~~~~~~gvp~~Klvl 213 (313)
T cd02874 135 PAGYTLSTAVVPKTSADQFGNWSGAYDYAAI-GKIVDFVVLMTYDWHWRGGPPGPVAPIGWVERVLQYAVTQIPREKILL 213 (313)
T ss_pred hcCcEEEEEecCccccccccccccccCHHHH-HhhCCEEEEEEeccCCCCCCCCccCChHHHHHHHHHHHhcCCHHHEEE
Confidence 245566654 332211 11111223 4789999999999874211111 1 1233455566668999999999
Q ss_pred eeecCC
Q 035598 242 GLPASP 247 (298)
Q Consensus 242 G~p~~~ 247 (298)
|+|++.
T Consensus 214 Gip~YG 219 (313)
T cd02874 214 GIPLYG 219 (313)
T ss_pred eecccc
Confidence 999984
No 21
>cd02875 GH18_chitobiase Chitobiase (also known as di-N-acetylchitobiase) is a lysosomal glycosidase that hydrolyzes the reducing-end N-acetylglucosamine from the chitobiose core of oligosaccharides during the ordered degradation of asparagine-linked glycoproteins in eukaryotes. Chitobiase can only do so if the asparagine that joins the oligosaccharide to protein is previously removed by a glycosylasparaginase. Chitobiase is therefore the final step in the lysosomal degradation of the protein/carbohydrate linkage component of asparagine-linked glycoproteins. The catalytic domain of chitobiase is an eight-stranded alpha/beta barrel fold similar to that of other family 18 glycosyl hydrolases such as hevamine and chitotriosidase.
Probab=99.93 E-value=9.8e-25 Score=207.40 Aligned_cols=147 Identities=17% Similarity=0.252 Sum_probs=110.2
Q ss_pred HHHHHHHhCCCeEEEEEeCCCCCCCCCCHHHHHHHHHHHHHhhcCCCCCCcCCCCCccCeEeeecCCCCc------hhHH
Q 035598 87 SDIKSCQAKGVKVLLSLGGAAGSYSLTSTQDAKQVATYLWNNFLGGHSSSRPLGPAVLDGIDLDIEGGTS------QHWD 160 (298)
Q Consensus 87 ~~i~~~q~~g~KVllSiGG~~~~~~~~~~~~~~~fa~~v~~~f~~g~s~~~~~~~~~~DGiDiD~E~p~~------~~~~ 160 (298)
+.++.+|++|+||+++ |+.. ...+.+++.|++|+++++ +++++|+|||||||||+|.. ++|+
T Consensus 68 ~~~~~A~~~~v~v~~~-~~~~-~~~l~~~~~R~~fi~siv----------~~~~~~gfDGIdIDwE~p~~~~~~d~~~~t 135 (358)
T cd02875 68 ELLCYAHSKGVRLVLK-GDVP-LEQISNPTYRTQWIQQKV----------ELAKSQFMDGINIDIEQPITKGSPEYYALT 135 (358)
T ss_pred HHHHHHHHcCCEEEEE-CccC-HHHcCCHHHHHHHHHHHH----------HHHHHhCCCeEEEcccCCCCCCcchHHHHH
Confidence 6678899999999988 3222 123678899999999997 67899999999999999952 6899
Q ss_pred HHHHHHHhhhh-CCCceEEEEcCCCCCCcc-----hhhhhhhcCCCceEEeeecCCCCCCCC------CCC-hhhHHHHH
Q 035598 161 ELARFLAGYSQ-KGKKVYVTAAPQCPFPDA-----WIGNALKTGVFDYVWVQFYNNPPCQYS------SGN-IGNLLNAW 227 (298)
Q Consensus 161 ~li~~LR~~~~-~g~~~llT~Ap~~~~~~~-----~~~~~l~~~~~D~invq~Yn~~~~~~~------~~~-~~~~~~~~ 227 (298)
.|+++||+.++ .+++++||+|+... |+. +--..+ .+++|||+||.||.++..+. +.+ ...+..++
T Consensus 136 ~llkelr~~l~~~~~~~~Lsvav~~~-p~~~~~~~yd~~~l-~~~vD~v~lMtYD~h~~~w~~~~~~g~~ap~~~v~~~v 213 (358)
T cd02875 136 ELVKETTKAFKKENPGYQISFDVAWS-PSCIDKRCYDYTGI-ADASDFLVVMDYDEQSQIWGKECIAGANSPYSQTLSGY 213 (358)
T ss_pred HHHHHHHHHHhhcCCCcEEEEEEecC-cccccccccCHHHH-HhhCCEeeEEeecccCCCCCCCCCCCCCCCchhHHHHH
Confidence 99999999884 34678999876532 211 111233 58999999999997642121 111 23456778
Q ss_pred HHHhc-CCCCCeEEEeeecCC
Q 035598 228 KQWTS-DIPANKIFLGLPASP 247 (298)
Q Consensus 228 ~~~~~-g~p~~KlvlG~p~~~ 247 (298)
+.|.. |+|++|||||+|+|.
T Consensus 214 ~~~~~~gvp~~KLvLGip~YG 234 (358)
T cd02875 214 NNFTKLGIDPKKLVMGLPWYG 234 (358)
T ss_pred HHHHHcCCCHHHeEEEeCCCC
Confidence 88875 899999999999984
No 22
>cd06549 GH18_trifunctional GH18 domain of an uncharacterized family of bacterial proteins, which share a common three-domain architecture: an N-terminal glycosyl hydrolase family 18 (GH18) domain, a glycosyl transferase family 2 domain, and a C-terminal polysaccharide deacetylase domain.
Probab=99.88 E-value=1.3e-21 Score=181.66 Aligned_cols=194 Identities=15% Similarity=0.168 Sum_probs=128.6
Q ss_pred EEEEeCCCCCCC--CcccccCCCCccEEEEceeeecC-CCCCccccCCCCCCCCCCCccchHHHHHHHHhC--CCeEEEE
Q 035598 28 IAIYWGQNGNEG--TLKETCSTGNYEYVILSFLATFG-NGQTPMINLAGHCDPYSNGCTGLSSDIKSCQAK--GVKVLLS 102 (298)
Q Consensus 28 vv~Y~g~~~~~~--~l~~~~~~~~~thii~AF~~~~~-~g~~~~~~~~~~~~~~~~~~~~l~~~i~~~q~~--g~KVllS 102 (298)
+.+||..|.+.+ ++.+. ...+|||.--+..+.+ +|.. . ...+ +.....++..|++ -++++.+
T Consensus 2 ~l~~~~~w~~~s~~sl~~~--~~~l~~vsP~W~~~~~~~g~l---~--~~~d------~~~~~~~~~~k~~~~~l~~~~~ 68 (298)
T cd06549 2 ALAFYTPWDDASFASLKRH--APRLDWLVPEWLNLTGPEGRI---D--VFVD------PQGVAIIAAAKAHPKVLPLVQN 68 (298)
T ss_pred eeEEEecCChhhHHHHHHh--hccCCEEeceeEEEecCCCce---e--ccCC------hHHHHHHHHHHcCCceeEEEEe
Confidence 578998764433 35555 4588999887777753 3421 1 1101 1223345555543 3577778
Q ss_pred EeCCCCCC-----CCCCHHHHHHHHHHHHHhhcCCCCCCcCCCCCccCeEeeecCCCCc---hhHHHHHHHHHhhhhCCC
Q 035598 103 LGGAAGSY-----SLTSTQDAKQVATYLWNNFLGGHSSSRPLGPAVLDGIDLDIEGGTS---QHWDELARFLAGYSQKGK 174 (298)
Q Consensus 103 iGG~~~~~-----~~~~~~~~~~fa~~v~~~f~~g~s~~~~~~~~~~DGiDiD~E~p~~---~~~~~li~~LR~~~~~g~ 174 (298)
++|++.+. -+++++.|++|+++++ +++++|+|||||||||++.. ++|+.|+++||+.++. .
T Consensus 69 ~~~~~~~~~~~~~~l~~~~~R~~fi~~iv----------~~~~~~~~dGidiD~E~~~~~d~~~~~~fl~eL~~~l~~-~ 137 (298)
T cd06549 69 ISGGAWDGKNIARLLADPSARAKFIANIA----------AYLERNQADGIVLDFEELPADDLPKYVAFLSELRRRLPA-Q 137 (298)
T ss_pred cCCCCCCHHHHHHHhcCHHHHHHHHHHHH----------HHHHHhCCCCEEEecCCCChhHHHHHHHHHHHHHHHhhh-c
Confidence 88765321 2577889999999997 67899999999999999864 6899999999998742 3
Q ss_pred ceEEEEcCCCCCCcchhhhhhhcCCCceEEeeecCCCCCCCCCC---ChhhHHHHHHHHhcCCCCCeEEEeeecCC
Q 035598 175 KVYVTAAPQCPFPDAWIGNALKTGVFDYVWVQFYNNPPCQYSSG---NIGNLLNAWKQWTSDIPANKIFLGLPASP 247 (298)
Q Consensus 175 ~~llT~Ap~~~~~~~~~~~~l~~~~~D~invq~Yn~~~~~~~~~---~~~~~~~~~~~~~~g~p~~KlvlG~p~~~ 247 (298)
++.||+++... +..+--..+ ..++|+++||.||.++....++ +...+...++...+++|++||+||+|+|.
T Consensus 138 ~~~lsv~v~~~-~~~~d~~~l-~~~~D~v~lMtYD~~~~~~~~gp~a~~~~~~~~~~~~~~~vp~~KlvlGip~YG 211 (298)
T cd06549 138 GKQLTVTVPAD-EADWNLKAL-ARNADKLILMAYDEHYQGGAPGPIASQDWFESNLAQAVKKLPPEKLIVALGSYG 211 (298)
T ss_pred CcEEEEEecCC-CCCCCHHHH-HHhCCEEEEEEeccCCCCCCCCCCCChhhHHHHHHHHHhCCCHHHEEEEecccC
Confidence 56777775432 222211233 4899999999999864211111 11223334455557999999999999995
No 23
>cd06543 GH18_PF-ChiA-like PF-ChiA is an uncharacterized chitinase found in the hyperthermophilic archaeon Pyrococcus furiosus with a glycosyl hydrolase family 18 (GH18) catalytic domain as well as a cellulose-binding domain. Members of this domain family are found not only in archaea but also in eukaryotes and prokaryotes. PF-ChiA exhibits hydrolytic activity toward both colloidal and crystalline (beta/alpha) chitins at high temperature.
Probab=99.88 E-value=1.5e-21 Score=180.59 Aligned_cols=230 Identities=20% Similarity=0.263 Sum_probs=138.7
Q ss_pred CCCcccccCCCCccEEEEceeeecCCCCCccccCCCCCCCCCCCccchHHHHHHHHhCCCeEEEEEeCCCCCCCCCCHHH
Q 035598 38 EGTLKETCSTGNYEYVILSFLATFGNGQTPMINLAGHCDPYSNGCTGLSSDIKSCQAKGVKVLLSLGGAAGSYSLTSTQD 117 (298)
Q Consensus 38 ~~~l~~~~~~~~~thii~AF~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~i~~~q~~g~KVllSiGG~~~~~~~~~~~~ 117 (298)
..++.+.|....|+||+|||+...+++. |. +.++.. ...+..+.++|+.||++|+||+||||||+++....+..+
T Consensus 14 ~~~l~~~~~~~g~~~v~lAFi~~~~~~~-~~--w~g~~~--~~~~~~~~~~i~~lk~~G~kViiS~GG~~g~~~~~~~~~ 88 (294)
T cd06543 14 PPDLTTYAAATGVKAFTLAFIVASGGCK-PA--WGGSYP--LDQGGWIKSDIAALRAAGGDVIVSFGGASGTPLATSCTS 88 (294)
T ss_pred CcCHHHHHHHcCCCEEEEEEEEcCCCCc-cc--CCCCCC--cccchhHHHHHHHHHHcCCeEEEEecCCCCCccccCccc
Confidence 3456678888999999999998764432 22 222211 112567889999999999999999999997653335678
Q ss_pred HHHHHHHHHHhhcCCCCCCcCCCCCccCeEeeecCCCCc------hhHHHHHHHHHhhhhCCCceEEEEcCCC-C---CC
Q 035598 118 AKQVATYLWNNFLGGHSSSRPLGPAVLDGIDLDIEGGTS------QHWDELARFLAGYSQKGKKVYVTAAPQC-P---FP 187 (298)
Q Consensus 118 ~~~fa~~v~~~f~~g~s~~~~~~~~~~DGiDiD~E~p~~------~~~~~li~~LR~~~~~g~~~llT~Ap~~-~---~~ 187 (298)
|++|++++. +++++|+|||||||||+|.. +++..++++||+.+ +++.||.+... | .+
T Consensus 89 ~~~~~~a~~----------~~i~~y~~dgiDfDiE~~~~~d~~~~~~~~~al~~Lq~~~---p~l~vs~Tlp~~p~gl~~ 155 (294)
T cd06543 89 ADQLAAAYQ----------KVIDAYGLTHLDFDIEGGALTDTAAIDRRAQALALLQKEY---PDLKISFTLPVLPTGLTP 155 (294)
T ss_pred HHHHHHHHH----------HHHHHhCCCeEEEeccCCccccchhHHHHHHHHHHHHHHC---CCcEEEEecCCCCCCCCh
Confidence 899999885 67899999999999999864 34555666666553 45666665432 2 12
Q ss_pred cc--hhhhhhhc-CCCceEEeeecCCCCCCCCCCC-hhhHHH---HHHHHhcC-CC---CCeE--EEeeecCCC-CCCCC
Q 035598 188 DA--WIGNALKT-GVFDYVWVQFYNNPPCQYSSGN-IGNLLN---AWKQWTSD-IP---ANKI--FLGLPASPA-AAGSG 253 (298)
Q Consensus 188 ~~--~~~~~l~~-~~~D~invq~Yn~~~~~~~~~~-~~~~~~---~~~~~~~g-~p---~~Kl--vlG~p~~~~-~a~~g 253 (298)
+. .+..+... -.+|+||||.||.++.. ...+ .+..++ +.....+. .| ..++ -+|+----+ +.-.+
T Consensus 156 ~g~~~l~~a~~~Gv~~d~VNiMtmDyg~~~-~~~~mg~~a~~aa~~~~~ql~~~~~~~s~~~~~~~ig~TpMiG~nD~~~ 234 (294)
T cd06543 156 DGLNVLEAAAANGVDLDTVNIMTMDYGSSA-GSQDMGAAAISAAESLHDQLKDLYPKLSDAELWAMIGVTPMIGVNDVGS 234 (294)
T ss_pred hHHHHHHHHHHcCCCcceeeeeeecCCCCC-CcccHHHHHHHHHHHHHHHHHHHccCCCHHHHHHHccccccccccCCCC
Confidence 21 11222222 37999999999987421 1111 111111 11111111 11 1100 012221111 11112
Q ss_pred -CcChHHHHHHHHHhhhcCCCCceEEEEeccccCCC
Q 035598 254 -FIPTADLISKVLPAIKGSAKYGGVMLWSKYYDDQS 288 (298)
Q Consensus 254 -y~~~~~l~~~~~~~~~~~~~~gGvm~W~~~~d~~~ 288 (298)
..+.++.. .+... .+..++|.+-+|+++-|...
T Consensus 235 e~ft~~da~-~~~~f-A~~~~l~~~s~Ws~~RD~~~ 268 (294)
T cd06543 235 EVFTLADAQ-TLVDF-AKEKGLGRLSMWSLNRDRPC 268 (294)
T ss_pred ceeeHHHHH-HHHHH-HHhCCCCeEeeeeccCCCCC
Confidence 44566664 34444 34578999999999999765
No 24
>COG3858 Predicted glycosyl hydrolase [General function prediction only]
Probab=99.07 E-value=1.8e-09 Score=102.38 Aligned_cols=149 Identities=19% Similarity=0.258 Sum_probs=99.7
Q ss_pred HHHHHHHhCCCeEEEEE--eC---CCCC-----CCCCCHHHHHHHHHHHHHhhcCCCCCCcCCCCCccCeEeeecCCCCc
Q 035598 87 SDIKSCQAKGVKVLLSL--GG---AAGS-----YSLTSTQDAKQVATYLWNNFLGGHSSSRPLGPAVLDGIDLDIEGGTS 156 (298)
Q Consensus 87 ~~i~~~q~~g~KVllSi--GG---~~~~-----~~~~~~~~~~~fa~~v~~~f~~g~s~~~~~~~~~~DGiDiD~E~p~~ 156 (298)
..++..|.+++|.++.+ ++ .+.+ .-+.++..++++.++++ +.++.+|+.|+.||+|+-.+
T Consensus 151 ~~~~~~~~~~i~~~~~iSN~~~~~~~f~~ela~~lL~net~~~~~i~~ii----------~~l~~~Gyrgv~iDfE~v~~ 220 (423)
T COG3858 151 NVIEIAQCRKIKPVPGISNGTRPGANFGGELAQLLLNNETAKNRLINNII----------TLLDARGYRGVNIDFENVGP 220 (423)
T ss_pred chhhhhhhcccceeEEEecCCccccccchHHHHHHHhcHHHHHHHHHHHH----------HHHHhcCcccEEechhhCCH
Confidence 45566667788877665 44 1111 12456777888888886 56788999999999998765
Q ss_pred ---hhHHHHHHHHHhhhhCCCceEEEEcCCCCCCcc----hhh----hhhhcCCCceEEeeecCCCCCCCCCCChh---h
Q 035598 157 ---QHWDELARFLAGYSQKGKKVYVTAAPQCPFPDA----WIG----NALKTGVFDYVWVQFYNNPPCQYSSGNIG---N 222 (298)
Q Consensus 157 ---~~~~~li~~LR~~~~~g~~~llT~Ap~~~~~~~----~~~----~~l~~~~~D~invq~Yn~~~~~~~~~~~~---~ 222 (298)
+-|+.|++++|+.++ ..++.+|.|+.+..++. +.. ..+ .+.+||+.+|.||.+...-.++... -
T Consensus 221 ~DR~~yt~flR~~r~~l~-~~G~~~siAvaakt~~~~~G~W~~~~dy~a~-Gkiad~v~lMtYd~h~~gG~PG~vA~i~~ 298 (423)
T COG3858 221 GDRELYTDFLRQVRDALH-SGGYTVSIAVAAKTSDLQVGSWHGAYDYVAL-GKIADFVILMTYDWHYSGGPPGPVASIGW 298 (423)
T ss_pred HHHHHHHHHHHHHHHHhc-cCCeEEEEEecCCCCCCcCccccchhhhhhh-ceeeeEEEEEEeccCcCCCCCCcccCchh
Confidence 568899999999874 34577777765432221 211 112 6889999999999763222223222 2
Q ss_pred HHHHHHHHhcCCCCCeEEEeeecCC
Q 035598 223 LLNAWKQWTSDIPANKIFLGLPASP 247 (298)
Q Consensus 223 ~~~~~~~~~~g~p~~KlvlG~p~~~ 247 (298)
+.+.+++-+..+|++||+||+|++.
T Consensus 299 vr~~ieya~T~iP~~Kv~mGip~YG 323 (423)
T COG3858 299 VRKVIEYALTVIPAEKVMMGIPLYG 323 (423)
T ss_pred HhhhhhhhheecchHHeEEcccccc
Confidence 2333333345789999999999995
No 25
>PF02638 DUF187: Glycosyl hydrolase like GH101; InterPro: IPR003790 This entry describes proteins of unknown function.
Probab=97.53 E-value=0.00038 Score=65.27 Aligned_cols=154 Identities=17% Similarity=0.210 Sum_probs=95.9
Q ss_pred ccchHHHHHHHHhCCCeEEEEE--e--CCC-CC-----C-C--------------------CCC--HHHHHHHHHHHHHh
Q 035598 82 CTGLSSDIKSCQAKGVKVLLSL--G--GAA-GS-----Y-S--------------------LTS--TQDAKQVATYLWNN 128 (298)
Q Consensus 82 ~~~l~~~i~~~q~~g~KVllSi--G--G~~-~~-----~-~--------------------~~~--~~~~~~fa~~v~~~ 128 (298)
...|...|+.||++|++|---+ | +.. +. . . +-+ ..+.++|...++
T Consensus 69 ~DpL~~~I~eaHkrGlevHAW~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~lnP~~PeVr~~i~~~v-- 146 (311)
T PF02638_consen 69 FDPLEFMIEEAHKRGLEVHAWFRVGFNAPDVSHILKKHPEWFAVNHPGWVRTYEDANGGYYWLNPGHPEVRDYIIDIV-- 146 (311)
T ss_pred ccHHHHHHHHHHHcCCEEEEEEEeecCCCchhhhhhcCchhheecCCCceeecccCCCCceEECCCCHHHHHHHHHHH--
Confidence 5678999999999999998665 2 111 00 0 0 001 112344555554
Q ss_pred hcCCCCCCcCCCCCccCeEeee-cCCCCc----------------------------------hhHHHHHHHHHhhhh-C
Q 035598 129 FLGGHSSSRPLGPAVLDGIDLD-IEGGTS----------------------------------QHWDELARFLAGYSQ-K 172 (298)
Q Consensus 129 f~~g~s~~~~~~~~~~DGiDiD-~E~p~~----------------------------------~~~~~li~~LR~~~~-~ 172 (298)
.+++++|.+|||-|| +-||.. ++...|+++|++..+ .
T Consensus 147 -------~Eiv~~YdvDGIhlDdy~yp~~~~g~~~~~~~~y~~~~g~~~~~~~~d~~W~~WRr~~I~~~V~~i~~~ik~~ 219 (311)
T PF02638_consen 147 -------KEIVKNYDVDGIHLDDYFYPPPSFGYDFPDVAAYEKYTGKDPFSSPEDDAWTQWRRDNINNFVKRIYDAIKAI 219 (311)
T ss_pred -------HHHHhcCCCCeEEecccccccccCCCCCccHHHHHHhcCcCCCCCccchHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 477899999999999 555420 245678999988753 4
Q ss_pred CCceEEEEcCCCCCCcch---hh---hhhhcCCCceEEeeecCCCCCCCCCCChhhHHHHHHHHhcCC--CCCeEEEeee
Q 035598 173 GKKVYVTAAPQCPFPDAW---IG---NALKTGVFDYVWVQFYNNPPCQYSSGNIGNLLNAWKQWTSDI--PANKIFLGLP 244 (298)
Q Consensus 173 g~~~llT~Ap~~~~~~~~---~~---~~l~~~~~D~invq~Yn~~~~~~~~~~~~~~~~~~~~~~~g~--p~~KlvlG~p 244 (298)
.+...++++|...+...+ +. .-+..+++|+|.+|.|... ... ....+......|.+.. ...+|++|+.
T Consensus 220 kP~v~~sisp~g~~~~~y~~~~qD~~~W~~~G~iD~i~Pq~Y~~~---~~~-~~~~~~~~~~~w~~~~~~~~v~ly~G~~ 295 (311)
T PF02638_consen 220 KPWVKFSISPFGIWNSAYDDYYQDWRNWLKEGYIDYIVPQIYWSD---FSH-FTAPYEQLAKWWAKQVKPTNVHLYIGLA 295 (311)
T ss_pred CCCCeEEEEeecchhhhhhheeccHHHHHhcCCccEEEeeecccc---cch-hHHHHHHHHHHHHHhhcCCCceEEEccC
Confidence 577889999986542111 11 1234689999999999552 111 1123334445565432 3469999999
Q ss_pred cCCC
Q 035598 245 ASPA 248 (298)
Q Consensus 245 ~~~~ 248 (298)
.+.-
T Consensus 296 ~y~~ 299 (311)
T PF02638_consen 296 LYKV 299 (311)
T ss_pred cCCC
Confidence 9864
No 26
>cd06547 GH85_ENGase Endo-beta-N-acetylglucosaminidase (ENGase) hydrolyzes the N-N'-diacetylchitobiosyl core of N-glycosylproteins. The beta-1,4-glycosyl bond located between two N-acetylglucosamine residues is hydrolyzed such that N-acetylglucosamine 1 remains with the protein and N-acetylglucosamine 2 forms the reducing end of the released glycan. ENGase is a key enzyme in the processing of free oligosaccharides in the cytosol of eukaryotes. Oligosaccharides formed in the lumen of the endoplasmic reticulum are transported into the cytosol where they are catabolized by cytosolic ENGases and other enzymes, possibly to maximize the reutilization of the component sugars. ENGases have an eight-stranded alpha/beta barrel topology and are classified as a family 85 glycosyl hydrolase (GH85) domain. The GH85 ENGases are sequence-similar to the family 18 glycosyl hydrolases, also known as GH18 chitinases. An ENGase-like protein is also found in bacteria and is included in this alignment mod
Probab=96.84 E-value=0.001 Score=63.18 Aligned_cols=75 Identities=21% Similarity=0.161 Sum_probs=56.3
Q ss_pred HHHHHHHhCCCeEEEEEe-CCCCCC-----CCCC-HHHHHHHHHHHHHhhcCCCCCCcCCCCCccCeEeeecCCCC-c--
Q 035598 87 SDIKSCQAKGVKVLLSLG-GAAGSY-----SLTS-TQDAKQVATYLWNNFLGGHSSSRPLGPAVLDGIDLDIEGGT-S-- 156 (298)
Q Consensus 87 ~~i~~~q~~g~KVllSiG-G~~~~~-----~~~~-~~~~~~fa~~v~~~f~~g~s~~~~~~~~~~DGiDiD~E~p~-~-- 156 (298)
.-|..+|++|+|||-.|- -+.+.. -+.+ ++.+..+|+.|+ ++.+.|||||+-||+|... .
T Consensus 50 ~~idaAHknGV~Vlgti~~e~~~~~~~~~~lL~~~~~~~~~~a~kLv----------~lak~yGfDGw~iN~E~~~~~~~ 119 (339)
T cd06547 50 DWINAAHRNGVPVLGTFIFEWTGQVEWLEDFLKKDEDGSFPVADKLV----------EVAKYYGFDGWLINIETELGDAE 119 (339)
T ss_pred HHHHHHHhcCCeEEEEEEecCCCchHHHHHHhccCcccchHHHHHHH----------HHHHHhCCCceEeeeeccCCcHH
Confidence 567788999999997774 111111 1344 666788888886 6789999999999999876 2
Q ss_pred --hhHHHHHHHHHhhhh
Q 035598 157 --QHWDELARFLAGYSQ 171 (298)
Q Consensus 157 --~~~~~li~~LR~~~~ 171 (298)
+.+..|+++||+.++
T Consensus 120 ~~~~l~~F~~~L~~~~~ 136 (339)
T cd06547 120 KAKRLIAFLRYLKAKLH 136 (339)
T ss_pred HHHHHHHHHHHHHHHHh
Confidence 578899999999863
No 27
>KOG2091 consensus Predicted member of glycosyl hydrolase family 18 [Carbohydrate transport and metabolism]
Probab=96.16 E-value=0.091 Score=48.94 Aligned_cols=175 Identities=15% Similarity=0.149 Sum_probs=88.5
Q ss_pred HHHHHHHhCCCeEEE--E--EeCCCCC---CCCCCHHHHHHHHHHHHHhhcCCCCCCcCCCCCccCeEeee-cCCCCc--
Q 035598 87 SDIKSCQAKGVKVLL--S--LGGAAGS---YSLTSTQDAKQVATYLWNNFLGGHSSSRPLGPAVLDGIDLD-IEGGTS-- 156 (298)
Q Consensus 87 ~~i~~~q~~g~KVll--S--iGG~~~~---~~~~~~~~~~~fa~~v~~~f~~g~s~~~~~~~~~~DGiDiD-~E~p~~-- 156 (298)
.-|+++|++|+.+-+ - +--+.+. .-+...+.|+...+.++ .++++++|||+-++ |..-..
T Consensus 131 gwiralRk~~~~l~ivPR~~fd~~~~~d~ke~l~ke~l~ekv~~tlv----------~~ck~~~fdGlVlevwsq~a~~i 200 (392)
T KOG2091|consen 131 GWIRALRKSGKDLHIVPRFYFDEFTSADLKEFLVKEALREKVGQTLV----------NFCKKHGFDGLVLEVWSQLADVI 200 (392)
T ss_pred HHHHHHHHhCCCceeeceehhhhccchHHHHHhhhHHHHHHHHHHHH----------HHHHHcCCCeeeHHHHHHHHHHH
Confidence 456777766554432 1 1122211 01234566888777776 56899999999987 332111
Q ss_pred --h----hHHHHHHHHHhhhhCCCceEEEEcCCCCCCcch---hh-hhhh--cCCCceEEeeecCCCCCCCCCCC-hhhH
Q 035598 157 --Q----HWDELARFLAGYSQKGKKVYVTAAPQCPFPDAW---IG-NALK--TGVFDYVWVQFYNNPPCQYSSGN-IGNL 223 (298)
Q Consensus 157 --~----~~~~li~~LR~~~~~g~~~llT~Ap~~~~~~~~---~~-~~l~--~~~~D~invq~Yn~~~~~~~~~~-~~~~ 223 (298)
. -...|.++|++. .=..+++..|........ +. +.++ ...+|.+.+|.||....+-+.++ +...
T Consensus 201 ~d~~al~~v~hl~k~Lhkq---~l~~iLvvPp~~~~e~~~~~~ft~ee~~~L~~~~d~fsLmTYd~s~~~~pg~nap~~w 277 (392)
T KOG2091|consen 201 ADKDALELVEHLGKALHKQ---ELQAILVVPPVIEEENGQLKFFTPEEFSKLVAVYDGFSLMTYDYSLVQGPGPNAPLEW 277 (392)
T ss_pred hhhHHHHHHHHHHHHHHHh---heEEEEEeCCCCcCCCCCcCcCCHHHHHHHHHhhhheeEEEeecccccCCCCCCCHHH
Confidence 1 112344555543 124677776642111111 11 1111 47899999999998642211111 2222
Q ss_pred H-HHHHHHhc-CCCCCeEEEeeecCCCC----CCCCCcChHHHHHHHHHhhhcCCCCceEEEEe
Q 035598 224 L-NAWKQWTS-DIPANKIFLGLPASPAA----AGSGFIPTADLISKVLPAIKGSAKYGGVMLWS 281 (298)
Q Consensus 224 ~-~~~~~~~~-g~p~~KlvlG~p~~~~~----a~~gy~~~~~l~~~~~~~~~~~~~~gGvm~W~ 281 (298)
+ .++....- .....||++|+-+|... .|.+-|+... .++.+|... -+|.|+
T Consensus 278 i~~~l~~l~~~s~~r~KiLlGlNFYG~d~~~gdg~~~IT~~r----YL~lLk~~k---~~~~~D 334 (392)
T KOG2091|consen 278 IRHCLHHLGGSSAKRPKILLGLNFYGNDFNLGDGGEAITAKR----YLQLLKGEK---SVFKFD 334 (392)
T ss_pred HHHHHHHhCCccccccceeEeeeccccccccCCCCCceeHHH----HHHHHhccC---cceeec
Confidence 2 23333221 22458999999999532 1223444433 344555432 256776
No 28
>PF03644 Glyco_hydro_85: Glycosyl hydrolase family 85 ; InterPro: IPR005201 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This group of endo-beta-N-acetylglucosaminidases belong to the glycoside hydrolase family 85 (GH85 from CAZY). These enzymes work on a broad spectrum of substrates.; GO: 0033925 mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase activity, 0005737 cytoplasm; PDB: 2W92_A 2W91_A 2VTF_B 3FHQ_B 3FHA_D 3GDB_A.
Probab=94.80 E-value=0.017 Score=54.28 Aligned_cols=83 Identities=20% Similarity=0.151 Sum_probs=48.7
Q ss_pred HHHHHHHhCCCeEEEEEe-CCCCC-----CCCC-CHHHHHHHHHHHHHhhcCCCCCCcCCCCCccCeEeeecCCCCc---
Q 035598 87 SDIKSCQAKGVKVLLSLG-GAAGS-----YSLT-STQDAKQVATYLWNNFLGGHSSSRPLGPAVLDGIDLDIEGGTS--- 156 (298)
Q Consensus 87 ~~i~~~q~~g~KVllSiG-G~~~~-----~~~~-~~~~~~~fa~~v~~~f~~g~s~~~~~~~~~~DGiDiD~E~p~~--- 156 (298)
.-|.++|+.|+|||=.|- .|++. .-+. +++....+|+.++ ++.+-|||||.-|++|.+..
T Consensus 46 ~widaAHrnGV~vLGTiife~~~~~~~~~~ll~~~~~g~~~~A~kLi----------~ia~~yGFDGw~iN~E~~~~~~~ 115 (311)
T PF03644_consen 46 GWIDAAHRNGVKVLGTIIFEWGGGAEWCEELLEKDEDGSFPYADKLI----------EIAKYYGFDGWLINIETPLSGPE 115 (311)
T ss_dssp HHHHHHHHTT--EEEEEEEEEE--HHHHHHHT---TTS--HHHHHHH----------HHHHHHT--EEEEEEEESSTTGG
T ss_pred hhHHHHHhcCceEEEEEEecCCchHHHHHHHHcCCcccccHHHHHHH----------HHHHHcCCCceEEEecccCCchh
Confidence 467889999999985442 22221 1133 3344556777775 56788999999999998843
Q ss_pred --hhHHHHHHHHHhhhhCCCceEEE
Q 035598 157 --QHWDELARFLAGYSQKGKKVYVT 179 (298)
Q Consensus 157 --~~~~~li~~LR~~~~~g~~~llT 179 (298)
+.+..|+++||+..+..+++.|.
T Consensus 116 ~~~~l~~F~~~l~~~~~~~~~~~v~ 140 (311)
T PF03644_consen 116 DAENLIDFLKYLRKEAHENPGSEVI 140 (311)
T ss_dssp GHHHHHHHHHHHHHHHHHT-T-EEE
T ss_pred HHHHHHHHHHHHHHHhhcCCCcEEE
Confidence 57888999999875323444443
No 29
>PF11340 DUF3142: Protein of unknown function (DUF3142); InterPro: IPR021488 This bacterial family of proteins has no known function.
Probab=92.53 E-value=1.3 Score=38.23 Aligned_cols=93 Identities=23% Similarity=0.348 Sum_probs=59.2
Q ss_pred CccCeEeeecCCCCc--hhHHHHHHHHHhhhhCCCceE--EEEcCCCC-CCcchhhhhhhcCCCceEEeeecCCCCCCCC
Q 035598 142 AVLDGIDLDIEGGTS--QHWDELARFLAGYSQKGKKVY--VTAAPQCP-FPDAWIGNALKTGVFDYVWVQFYNNPPCQYS 216 (298)
Q Consensus 142 ~~~DGiDiD~E~p~~--~~~~~li~~LR~~~~~g~~~l--lT~Ap~~~-~~~~~~~~~l~~~~~D~invq~Yn~~~~~~~ 216 (298)
..+-||.||+..++. ..|..|+++||+.+ ++++= ||+=|.-. .++ .+.. + .+.+|-+-+|.|..- +
T Consensus 41 ~~v~giQIDfDa~t~~L~~Y~~fL~~LR~~L--P~~~~LSIT~L~dW~~~~~-~L~~-L-~~~VDE~VlQ~yqGl-~--- 111 (181)
T PF11340_consen 41 NNVAGIQIDFDAATSRLPAYAQFLQQLRQRL--PPDYRLSITALPDWLSSPD-WLNA-L-PGVVDELVLQVYQGL-F--- 111 (181)
T ss_pred CCceEEEEecCccccchHHHHHHHHHHHHhC--CCCceEeeEEehhhhcCch-hhhh-H-hhcCCeeEEEeecCC-C---
Confidence 468999999999986 68999999999986 34444 55444321 122 2322 2 378999999999332 1
Q ss_pred CCChhhHHHHHHHHhcCCCCCeEEEeeecCC
Q 035598 217 SGNIGNLLNAWKQWTSDIPANKIFLGLPASP 247 (298)
Q Consensus 217 ~~~~~~~~~~~~~~~~g~p~~KlvlG~p~~~ 247 (298)
+..+...-...|. .++ -..-+|+|.+.
T Consensus 112 --d~~~~~~yl~~l~-~l~-~PFriaLp~yG 138 (181)
T PF11340_consen 112 --DPPNYARYLPRLA-RLT-LPFRIALPQYG 138 (181)
T ss_pred --CHHHHHHHHHHHh-cCC-CCeEEecCcCC
Confidence 2222222223332 344 66889999985
No 30
>TIGR01370 cysRS possible cysteinyl-tRNA synthetase, Methanococcus type. Assignment of this protein family as cysteinyl-tRNA synthetase is controversial, supported by PubMed:11333988 but challenged by PubMed:14679218. Members of this family from Deinococcus radiodurans (bacterial) and Methanococcus jannaschii (archaeal), species lacking a conventional cysteinyl-tRNA synthetase (Cys--tRNA ligase), have been indicated to be a novel form of that enzyme, perhaps distantly related to class I tRNA ligases. The member from Thermotoga maritima is presumed to be a second isozyme of cysteinyl-tRNA synthetase. A number of homologous but more distantly related proteins are annotated as alpha-1,4 polygalactosaminidases.
Probab=91.83 E-value=0.53 Score=44.27 Aligned_cols=22 Identities=32% Similarity=0.430 Sum_probs=18.7
Q ss_pred HHHHHHHHhCCCeEE--EEEeCCC
Q 035598 86 SSDIKSCQAKGVKVL--LSLGGAA 107 (298)
Q Consensus 86 ~~~i~~~q~~g~KVl--lSiGG~~ 107 (298)
.++|+.+|.+|+||+ ||+|-+.
T Consensus 84 ~~~i~~Lk~~g~~viaYlSvGe~E 107 (315)
T TIGR01370 84 PEEIVRAAAAGRWPIAYLSIGAAE 107 (315)
T ss_pred HHHHHHHHhCCcEEEEEEEchhcc
Confidence 578899999999999 7999864
No 31
>PF13200 DUF4015: Putative glycosyl hydrolase domain
Probab=88.39 E-value=9.8 Score=35.87 Aligned_cols=142 Identities=15% Similarity=0.113 Sum_probs=73.4
Q ss_pred CCCccCeEeeec-CCCCc------------------hhHHHHHHHHHhhhhCCCceEEEEcCCCCC----Ccchhhhhhh
Q 035598 140 GPAVLDGIDLDI-EGGTS------------------QHWDELARFLAGYSQKGKKVYVTAAPQCPF----PDAWIGNALK 196 (298)
Q Consensus 140 ~~~~~DGiDiD~-E~p~~------------------~~~~~li~~LR~~~~~g~~~llT~Ap~~~~----~~~~~~~~l~ 196 (298)
.+.|||.|-||+ .+|.. +....|++..|+.++ ..+..||+.+-+.. .+..++..+.
T Consensus 134 a~~GFdEIqfDYIRFP~~~~~~~l~y~~~~~~~~r~~aI~~Fl~~a~~~l~-~~~v~vSaDVfG~~~~~~~~~~iGQ~~~ 212 (316)
T PF13200_consen 134 AKLGFDEIQFDYIRFPDEGRLSGLDYSENDTEESRVDAITDFLAYAREELH-PYGVPVSADVFGYVAWSPDDMGIGQDFE 212 (316)
T ss_pred HHcCCCEEEeeeeecCCCCcccccccCCCCCcchHHHHHHHHHHHHHHHHh-HcCCCEEEEecccccccCCCCCcCCCHH
Confidence 467999999995 45651 235678888888763 23456777754321 1112222111
Q ss_pred --cCCCceEEeeecCCCC-C---CCCC--CChhhH-HHHHHH---HhcCCC-CCeEEEeeecCCCCCCCC-Cc--ChHHH
Q 035598 197 --TGVFDYVWVQFYNNPP-C---QYSS--GNIGNL-LNAWKQ---WTSDIP-ANKIFLGLPASPAAAGSG-FI--PTADL 260 (298)
Q Consensus 197 --~~~~D~invq~Yn~~~-~---~~~~--~~~~~~-~~~~~~---~~~g~p-~~KlvlG~p~~~~~a~~g-y~--~~~~l 260 (298)
..++|+|..|.|-.+- . ++.. ..+-.+ ..+.+. -..+.+ +.++--=+-.++...-.. |. .++++
T Consensus 213 ~~a~~vD~IsPMiYPSh~~~g~~g~~~P~~~PY~~v~~~~~~~~~~~~~~~~~~~~RPWlQ~Ft~~~~~~~~~~Yg~~ev 292 (316)
T PF13200_consen 213 KIAEYVDYISPMIYPSHYGPGFFGIDKPDLEPYEIVYRSLKRAKERLRGLEGPAIIRPWLQDFTASWLGKNYKEYGPEEV 292 (316)
T ss_pred HHhhhCCEEEecccccccCcccCCCCCcccChHHHHHHHHHHHHHHhhcCCCCCeEecccccccccccccCccccCHHHH
Confidence 5899999999996541 1 1111 111111 122211 112221 223332233333211111 33 46778
Q ss_pred HHHHHHhhhcCCCCceEEEEeccc
Q 035598 261 ISKVLPAIKGSAKYGGVMLWSKYY 284 (298)
Q Consensus 261 ~~~~~~~~~~~~~~gGvm~W~~~~ 284 (298)
...+ +.+++ .+..|-|+|...+
T Consensus 293 ~aQI-~A~~d-~g~~~~llWna~n 314 (316)
T PF13200_consen 293 RAQI-QALKD-AGIEGWLLWNASN 314 (316)
T ss_pred HHHH-HHHHH-cCCCeEEEECCCC
Confidence 7664 45554 4779999998654
No 32
>TIGR02402 trehalose_TreZ malto-oligosyltrehalose trehalohydrolase. Members of this family are the trehalose biosynthetic enzyme malto-oligosyltrehalose trehalohydrolase, formally known as 4-alpha-D-{(1-4)-alpha-D-glucano}trehalose trehalohydrolase (EC 3.2.1.141). It is the TreZ protein of the TreYZ pathway for trehalose biosynthesis, and alternative to the OtsAB system.
Probab=88.08 E-value=1.8 Score=43.77 Aligned_cols=62 Identities=19% Similarity=0.307 Sum_probs=41.6
Q ss_pred CCccchHHHHHHHHhCCCeEEEEEe----CCCC--------------------CCCCCCH---HHHHHHHHHHHHhhcCC
Q 035598 80 NGCTGLSSDIKSCQAKGVKVLLSLG----GAAG--------------------SYSLTST---QDAKQVATYLWNNFLGG 132 (298)
Q Consensus 80 ~~~~~l~~~i~~~q~~g~KVllSiG----G~~~--------------------~~~~~~~---~~~~~fa~~v~~~f~~g 132 (298)
++..+|++.|+.||++|++|+|=+= |..+ ...+..+ .-|+-+.+++.
T Consensus 157 G~~~e~k~lV~~aH~~Gi~VilD~V~NH~~~~~~~~~~~~~y~~~~~~~~wg~~~n~~~~~~~~vr~~i~~~~~------ 230 (542)
T TIGR02402 157 GGPDDLKALVDAAHGLGLGVILDVVYNHFGPEGNYLPRYAPYFTDRYSTPWGAAINFDGPGSDEVRRYILDNAL------ 230 (542)
T ss_pred CCHHHHHHHHHHHHHCCCEEEEEEccCCCCCccccccccCccccCCCCCCCCCccccCCCcHHHHHHHHHHHHH------
Confidence 4567899999999999999998641 1111 1112223 44555555543
Q ss_pred CCCCcCCCCCccCeEeeec
Q 035598 133 HSSSRPLGPAVLDGIDLDI 151 (298)
Q Consensus 133 ~s~~~~~~~~~~DGiDiD~ 151 (298)
..+++|++||+-||-
T Consensus 231 ----~W~~e~~iDGfR~D~ 245 (542)
T TIGR02402 231 ----YWLREYHFDGLRLDA 245 (542)
T ss_pred ----HHHHHhCCcEEEEeC
Confidence 457899999999994
No 33
>PLN02960 alpha-amylase
Probab=87.67 E-value=4.7 Score=42.97 Aligned_cols=24 Identities=13% Similarity=0.239 Sum_probs=20.9
Q ss_pred CCccchHHHHHHHHhCCCeEEEEE
Q 035598 80 NGCTGLSSDIKSCQAKGVKVLLSL 103 (298)
Q Consensus 80 ~~~~~l~~~i~~~q~~g~KVllSi 103 (298)
++..+|++.|++||++|++|+|-+
T Consensus 463 Gtp~dfk~LVd~aH~~GI~VILDv 486 (897)
T PLN02960 463 GTPDDFKRLVDEAHGLGLLVFLDI 486 (897)
T ss_pred CCHHHHHHHHHHHHHCCCEEEEEe
Confidence 345789999999999999999986
No 34
>PRK05402 glycogen branching enzyme; Provisional
Probab=86.27 E-value=8.1 Score=40.54 Aligned_cols=60 Identities=12% Similarity=0.045 Sum_probs=34.3
Q ss_pred cccCCCCccEEEEceeeecCCC---CCccccCCCCCCCCCCCccchHHHHHHHHhCCCeEEEEE
Q 035598 43 ETCSTGNYEYVILSFLATFGNG---QTPMINLAGHCDPYSNGCTGLSSDIKSCQAKGVKVLLSL 103 (298)
Q Consensus 43 ~~~~~~~~thii~AF~~~~~~g---~~~~~~~~~~~~~~~~~~~~l~~~i~~~q~~g~KVllSi 103 (298)
+++..-.+|+|-+.=+.-.+.+ ++-..++- ..+|.-++..+|++.|+.||++|+||+|=+
T Consensus 273 ~ylk~LGv~~i~L~Pi~e~~~~~~~GY~~~~y~-ai~~~~Gt~~dfk~lV~~~H~~Gi~VilD~ 335 (726)
T PRK05402 273 PYVKEMGFTHVELLPIAEHPFDGSWGYQPTGYY-APTSRFGTPDDFRYFVDACHQAGIGVILDW 335 (726)
T ss_pred HHHHHcCCCEEEECCcccCCCCCCCCCCcccCC-CcCcccCCHHHHHHHHHHHHHCCCEEEEEE
Confidence 4555667888876432211111 11111110 011222456789999999999999999874
No 35
>TIGR01515 branching_enzym alpha-1,4-glucan:alpha-1,4-glucan 6-glycosyltransferase. A sequence from Arabidopsis thaliana, GP|9294564, scores just above trusted, but appears either to contain corrupt sequence or, more likely, to be a pseudogene as some of the conserved catalytic residues common to the alpha amylase family are not conserved here.
Probab=86.24 E-value=7.9 Score=39.78 Aligned_cols=24 Identities=17% Similarity=0.361 Sum_probs=20.4
Q ss_pred CCccchHHHHHHHHhCCCeEEEEE
Q 035598 80 NGCTGLSSDIKSCQAKGVKVLLSL 103 (298)
Q Consensus 80 ~~~~~l~~~i~~~q~~g~KVllSi 103 (298)
++..+|++.|+.||++|+||+|=+
T Consensus 203 Gt~~dlk~lV~~~H~~Gi~VilD~ 226 (613)
T TIGR01515 203 GTPDDFMYFVDACHQAGIGVILDW 226 (613)
T ss_pred CCHHHHHHHHHHHHHCCCEEEEEe
Confidence 345689999999999999999864
No 36
>PRK12568 glycogen branching enzyme; Provisional
Probab=86.06 E-value=4.8 Score=42.19 Aligned_cols=61 Identities=15% Similarity=0.212 Sum_probs=35.0
Q ss_pred ccccCCCCccEEEEceee--ecCC-CCCccccCCCCCCCCCCCccchHHHHHHHHhCCCeEEEEE
Q 035598 42 KETCSTGNYEYVILSFLA--TFGN-GQTPMINLAGHCDPYSNGCTGLSSDIKSCQAKGVKVLLSL 103 (298)
Q Consensus 42 ~~~~~~~~~thii~AF~~--~~~~-g~~~~~~~~~~~~~~~~~~~~l~~~i~~~q~~g~KVllSi 103 (298)
.+++..-.+|||-+.=+. +.+. -++...++- ..+|.-++..+|+..|+.||++|++|+|=+
T Consensus 276 l~ylk~LGvt~I~LmPi~e~~~~~~wGY~~~~~~-a~~~~~G~~~dfk~lV~~~H~~Gi~VIlD~ 339 (730)
T PRK12568 276 IPYVQQLGFTHIELLPITEHPFGGSWGYQPLGLY-APTARHGSPDGFAQFVDACHRAGIGVILDW 339 (730)
T ss_pred HHHHHHcCCCEEEECccccCCCCCCCCCCCCcCC-ccCcccCCHHHHHHHHHHHHHCCCEEEEEe
Confidence 345556788998764222 1111 011111111 011222456789999999999999999864
No 37
>PRK12313 glycogen branching enzyme; Provisional
Probab=85.32 E-value=8.4 Score=39.72 Aligned_cols=60 Identities=10% Similarity=0.005 Sum_probs=34.1
Q ss_pred cccCCCCccEEEEceeeecC---CCCCccccCCCCCCCCCCCccchHHHHHHHHhCCCeEEEEE
Q 035598 43 ETCSTGNYEYVILSFLATFG---NGQTPMINLAGHCDPYSNGCTGLSSDIKSCQAKGVKVLLSL 103 (298)
Q Consensus 43 ~~~~~~~~thii~AF~~~~~---~g~~~~~~~~~~~~~~~~~~~~l~~~i~~~q~~g~KVllSi 103 (298)
+++..-.+|+|-+.=+...+ +-++...++- ..+|.-++..+|++.|++||++|+||+|=+
T Consensus 178 ~yl~~LGv~~i~L~Pi~~~~~~~~~GY~~~~y~-~i~~~~Gt~~d~k~lv~~~H~~Gi~VilD~ 240 (633)
T PRK12313 178 PYVKEMGYTHVEFMPLMEHPLDGSWGYQLTGYF-APTSRYGTPEDFMYLVDALHQNGIGVILDW 240 (633)
T ss_pred HHHHHcCCCEEEeCchhcCCCCCCCCCCCcCcC-cCCCCCCCHHHHHHHHHHHHHCCCEEEEEE
Confidence 45556678887764221111 1012111211 011222455789999999999999999864
No 38
>cd06591 GH31_xylosidase_XylS XylS is a glycosyl hydrolase family 31 (GH31) alpha-xylosidase found in prokaryotes, eukaryotes, and archaea, that catalyzes the release of alpha-xylose from the non-reducing terminal side of the alpha-xyloside substrate. XylS has been characterized in Sulfolobus solfataricus where it hydrolyzes isoprimeverose, the p-nitrophenyl-beta derivative of isoprimeverose, and xyloglucan oligosaccharides, and has transxylosidic activity. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein. The XylS family corresponds to subgroup 3 in the Ernst et al classification of GH31 enzymes.
Probab=82.78 E-value=4.6 Score=37.89 Aligned_cols=64 Identities=14% Similarity=0.130 Sum_probs=44.4
Q ss_pred CccchHHHHHHHHhCCCeEEEEE------e----------C--------------CCC---CCCCCCHHHHHHHHHHHHH
Q 035598 81 GCTGLSSDIKSCQAKGVKVLLSL------G----------G--------------AAG---SYSLTSTQDAKQVATYLWN 127 (298)
Q Consensus 81 ~~~~l~~~i~~~q~~g~KVllSi------G----------G--------------~~~---~~~~~~~~~~~~fa~~v~~ 127 (298)
.++...+.|+.+|++|+||++.+ + | |.+ -..|++++.|+-|.+.+.
T Consensus 64 ~FPdp~~mi~~L~~~G~kv~~~i~P~v~~~~~~y~e~~~~g~~v~~~~g~~~~~~w~g~~~~~Dftnp~a~~w~~~~~~- 142 (319)
T cd06591 64 RFPDPKAMVRELHEMNAELMISIWPTFGPETENYKEMDEKGYLIKTDRGPRVTMQFGGNTRFYDATNPEAREYYWKQLK- 142 (319)
T ss_pred hCCCHHHHHHHHHHCCCEEEEEecCCcCCCChhHHHHHHCCEEEEcCCCCeeeeeCCCCccccCCCCHHHHHHHHHHHH-
Confidence 45667889999999999999876 1 1 111 134566776666666553
Q ss_pred hhcCCCCCCcCCCCCccCeEeeecCCC
Q 035598 128 NFLGGHSSSRPLGPAVLDGIDLDIEGG 154 (298)
Q Consensus 128 ~f~~g~s~~~~~~~~~~DGiDiD~E~p 154 (298)
+.+.+.|+||+=+|.-.|
T Consensus 143 ---------~~~~~~Gvdg~w~D~~Ep 160 (319)
T cd06591 143 ---------KNYYDKGVDAWWLDAAEP 160 (319)
T ss_pred ---------HHhhcCCCcEEEecCCCC
Confidence 456689999998887654
No 39
>PRK09441 cytoplasmic alpha-amylase; Reviewed
Probab=82.23 E-value=8.7 Score=38.12 Aligned_cols=24 Identities=21% Similarity=0.302 Sum_probs=21.0
Q ss_pred CCccchHHHHHHHHhCCCeEEEEE
Q 035598 80 NGCTGLSSDIKSCQAKGVKVLLSL 103 (298)
Q Consensus 80 ~~~~~l~~~i~~~q~~g~KVllSi 103 (298)
++.++|++.|++||++|+||++=+
T Consensus 78 Gt~~dl~~Li~~~H~~Gi~vi~D~ 101 (479)
T PRK09441 78 GTKEELLNAIDALHENGIKVYADV 101 (479)
T ss_pred CCHHHHHHHHHHHHHCCCEEEEEE
Confidence 456789999999999999999865
No 40
>PRK14706 glycogen branching enzyme; Provisional
Probab=82.20 E-value=8.2 Score=39.93 Aligned_cols=62 Identities=15% Similarity=0.047 Sum_probs=35.0
Q ss_pred cccccCCCCccEEEEceeeecCC-C--CCccccCCCCCCCCCCCccchHHHHHHHHhCCCeEEEEE
Q 035598 41 LKETCSTGNYEYVILSFLATFGN-G--QTPMINLAGHCDPYSNGCTGLSSDIKSCQAKGVKVLLSL 103 (298)
Q Consensus 41 l~~~~~~~~~thii~AF~~~~~~-g--~~~~~~~~~~~~~~~~~~~~l~~~i~~~q~~g~KVllSi 103 (298)
|.+++..-.+|||-+-=+.-.+. + ++...++- ..++.-++..+|++.|+.||++|++|+|-+
T Consensus 173 l~~ylk~lG~t~velmPv~e~~~~~~wGY~~~~~~-~~~~~~g~~~~~~~lv~~~H~~gi~VilD~ 237 (639)
T PRK14706 173 LGEYVTYMGYTHVELLGVMEHPFDGSWGYQVTGYY-APTSRLGTPEDFKYLVNHLHGLGIGVILDW 237 (639)
T ss_pred HHHHHHHcCCCEEEccchhcCCCCCCCCcCccccc-ccccccCCHHHHHHHHHHHHHCCCEEEEEe
Confidence 33455567889987643322211 1 11111110 001112345689999999999999999864
No 41
>cd02810 DHOD_DHPD_FMN Dihydroorotate dehydrogenase (DHOD) and Dihydropyrimidine dehydrogenase (DHPD) FMN-binding domain. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively. DHPD catalyzes the first step in pyrimidine degradation: the NADPH-dependent reduction of uracil and thymine to the corresponding 5,6-dihydropyrimidines. DHPD contains two FAD, two FMN and eight [4Fe-4S] clusters, arranged in two electron transfer chains that pass its homodimeric interface twice. Two of
Probab=81.72 E-value=9 Score=35.07 Aligned_cols=100 Identities=16% Similarity=0.186 Sum_probs=57.8
Q ss_pred cchHHHHHHHHh--CCCeEEEEEeCCCCCCCCCCHHHHHHHHHHHHHhhcCCCCCCcCCCCCccCeEeeecCCCCc----
Q 035598 83 TGLSSDIKSCQA--KGVKVLLSLGGAAGSYSLTSTQDAKQVATYLWNNFLGGHSSSRPLGPAVLDGIDLDIEGGTS---- 156 (298)
Q Consensus 83 ~~l~~~i~~~q~--~g~KVllSiGG~~~~~~~~~~~~~~~fa~~v~~~f~~g~s~~~~~~~~~~DGiDiD~E~p~~---- 156 (298)
..+.+.|+..++ .++.+++||+|. +.++ +++.+ +.+.++|+|+|+|++-.|..
T Consensus 83 ~~~~~~i~~~~~~~~~~pvi~si~g~-------~~~~---~~~~a-----------~~~~~~G~d~ielN~~cP~~~~~~ 141 (289)
T cd02810 83 DVWLQDIAKAKKEFPGQPLIASVGGS-------SKED---YVELA-----------RKIERAGAKALELNLSCPNVGGGR 141 (289)
T ss_pred HHHHHHHHHHHhccCCCeEEEEeccC-------CHHH---HHHHH-----------HHHHHhCCCEEEEEcCCCCCCCCc
Confidence 345566666554 478999999995 2232 33322 23456799999999988852
Q ss_pred ------hhHHHHHHHHHhhhhCCCceEEEEcCCCCCCcch--hhhhhhcCCCceEEee
Q 035598 157 ------QHWDELARFLAGYSQKGKKVYVTAAPQCPFPDAW--IGNALKTGVFDYVWVQ 206 (298)
Q Consensus 157 ------~~~~~li~~LR~~~~~g~~~llT~Ap~~~~~~~~--~~~~l~~~~~D~invq 206 (298)
+...++++++|+.. +....+=+.+... .+.. +-..+....+|+|.+.
T Consensus 142 ~~~~~~~~~~eiv~~vr~~~--~~pv~vKl~~~~~-~~~~~~~a~~l~~~Gad~i~~~ 196 (289)
T cd02810 142 QLGQDPEAVANLLKAVKAAV--DIPLLVKLSPYFD-LEDIVELAKAAERAGADGLTAI 196 (289)
T ss_pred ccccCHHHHHHHHHHHHHcc--CCCEEEEeCCCCC-HHHHHHHHHHHHHcCCCEEEEE
Confidence 23456778888763 2234444554321 1111 1122333458999885
No 42
>COG1649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=81.65 E-value=2.1 Score=41.74 Aligned_cols=154 Identities=19% Similarity=0.195 Sum_probs=87.7
Q ss_pred CccchHHHHHHHHhCCCeEE--EEEeCCCC-C-------CC-CCC----------H------------HHHHHHHHHHHH
Q 035598 81 GCTGLSSDIKSCQAKGVKVL--LSLGGAAG-S-------YS-LTS----------T------------QDAKQVATYLWN 127 (298)
Q Consensus 81 ~~~~l~~~i~~~q~~g~KVl--lSiGG~~~-~-------~~-~~~----------~------------~~~~~fa~~v~~ 127 (298)
..+.|..-|+..|++|++|. +..|.... . .. ..+ . -+.++|+.+++
T Consensus 113 g~DpLa~~I~~AHkr~l~v~aWf~~~~~a~~~s~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~ldPg~Pevq~~i~~lv- 191 (418)
T COG1649 113 GYDPLAFVIAEAHKRGLEVHAWFNPYRMAPPTSPLTKRHPHWLTTKRPGWVYVRHQGWGKRVWLDPGIPEVQDFITSLV- 191 (418)
T ss_pred CCChHHHHHHHHHhcCCeeeechhhcccCCCCChhHhhCCCCcccCCCCeEEEecCCceeeeEeCCCChHHHHHHHHHH-
Confidence 45678889999999999987 33343211 0 00 000 0 13456777765
Q ss_pred hhcCCCCCCcCCCCCccCeEeeec----CCCCc-----------------------------hhHHHHHHHHHhhh-hCC
Q 035598 128 NFLGGHSSSRPLGPAVLDGIDLDI----EGGTS-----------------------------QHWDELARFLAGYS-QKG 173 (298)
Q Consensus 128 ~f~~g~s~~~~~~~~~~DGiDiD~----E~p~~-----------------------------~~~~~li~~LR~~~-~~g 173 (298)
.+.+++|.+|||-||- |.+.. ++.+.|++++-... +..
T Consensus 192 --------~evV~~YdvDGIQfDd~fy~~~~~gy~~~~~~~y~~et~~~~~~~~~~w~~WRr~~i~~~v~~i~~~VKavK 263 (418)
T COG1649 192 --------VEVVRNYDVDGIQFDDYFYYPIPFGYDPDTVTLYRYETGKGPPSNPDQWTDWRRDNITALVAQISQTVKAVK 263 (418)
T ss_pred --------HHHHhCCCCCceecceeecccCccccCchHHHHHHhhccCCCCCCHHHHHHHHHHhHHHHHHHHHHHHHhhC
Confidence 4788999999999982 22210 23456666666543 234
Q ss_pred CceEEEEcCCC-CCCc-chhhh-------hhhcCCCceEEeeecCCCCCCCCCCChhhHHHHHHHHhc-CCC-CCeEEEe
Q 035598 174 KKVYVTAAPQC-PFPD-AWIGN-------ALKTGVFDYVWVQFYNNPPCQYSSGNIGNLLNAWKQWTS-DIP-ANKIFLG 242 (298)
Q Consensus 174 ~~~llT~Ap~~-~~~~-~~~~~-------~l~~~~~D~invq~Yn~~~~~~~~~~~~~~~~~~~~~~~-g~p-~~KlvlG 242 (298)
++..+|++|.- ...+ -.++. -+..+++|++-+|.|-... .. ...+......|++ -+| ...|..|
T Consensus 264 p~v~~svsp~n~~~~~~f~y~~~~qDw~~Wv~~G~iD~l~pqvYr~~~-~~----~~~~~~~~~~wa~~~~~~~i~i~~G 338 (418)
T COG1649 264 PNVKFSVSPFNPLGSATFAYDYFLQDWRRWVRQGLIDELAPQVYRTLS-TF----VAEYDTLAKWWANTVIPTRIGIYIG 338 (418)
T ss_pred CCeEEEEccCCCCCccceehhhhhhhHHHHHHcccHhhhhhhhhcccc-cc----hhhhhhHHHHhhhhhcccceeeecc
Confidence 77889999931 1110 01111 1236899999999995531 11 0111112244554 223 5678888
Q ss_pred eecCCC
Q 035598 243 LPASPA 248 (298)
Q Consensus 243 ~p~~~~ 248 (298)
+..+.-
T Consensus 339 ~~~~~v 344 (418)
T COG1649 339 LAAYKV 344 (418)
T ss_pred hhhccC
Confidence 888753
No 43
>TIGR02104 pulA_typeI pullulanase, type I. Pullulan is an unusual, industrially important polysaccharide in which short alpha-1,4 chains (maltotriose) are connected in alpha-1,6 linkages. Enzymes that cleave alpha-1,6 linkages in pullulan and release maltotriose are called pullulanases although pullulan itself may not be the natural substrate. This family consists of pullulanases related to the subfamilies described in TIGR02102 and TIGR02103 but having a different domain architecture with shorter sequences. Members are called type I pullulanases.
Probab=81.65 E-value=5.5 Score=40.85 Aligned_cols=21 Identities=19% Similarity=0.494 Sum_probs=18.7
Q ss_pred cchHHHHHHHHhCCCeEEEEE
Q 035598 83 TGLSSDIKSCQAKGVKVLLSL 103 (298)
Q Consensus 83 ~~l~~~i~~~q~~g~KVllSi 103 (298)
.+|++.|++||++|+||+|=+
T Consensus 229 ~efk~lV~~~H~~Gi~VilDv 249 (605)
T TIGR02104 229 RELKQMIQALHENGIRVIMDV 249 (605)
T ss_pred HHHHHHHHHHHHCCCEEEEEE
Confidence 579999999999999999854
No 44
>TIGR02103 pullul_strch alpha-1,6-glucosidases, pullulanase-type. Members of this protein family include secreted (or membrane-anchored) pullulanases of Gram-negative bacteria and pullulanase-type starch debranching enzymes of plants. Both enzymes hydrolyze alpha-1,6 glycosidic linkages. Pullulan is an unusual, industrially important polysaccharide in which short alpha-1,4 chains (maltotriose) are connected in alpha-1,6 linkages. Enzymes that cleave alpha-1,6 linkages in pullulan and release maltotriose are called pullulanases although pullulan itself may not be the natural substrate. This family is closely homologous to, but architecturally different from, the Gram-positive pullulanases of Gram-positive bacteria (TIGR02102).
Probab=80.04 E-value=7.9 Score=41.57 Aligned_cols=77 Identities=16% Similarity=0.209 Sum_probs=48.2
Q ss_pred cchHHHHHHHHhCCCeEEEEE-------eCCCC-C--------C--------------CC-----CCHHHHHHHHHHHHH
Q 035598 83 TGLSSDIKSCQAKGVKVLLSL-------GGAAG-S--------Y--------------SL-----TSTQDAKQVATYLWN 127 (298)
Q Consensus 83 ~~l~~~i~~~q~~g~KVllSi-------GG~~~-~--------~--------------~~-----~~~~~~~~fa~~v~~ 127 (298)
.+|++.|+.||++|++|++=+ +|... + + .. ..+.-|+-+.+++.
T Consensus 404 ~Efk~mV~alH~~Gi~VIlDVVyNHt~~~g~~~~s~ld~~~P~YY~r~~~~G~~~n~~~~~d~a~e~~~Vrk~iiDsl~- 482 (898)
T TIGR02103 404 KEFREMVQALNKTGLNVVMDVVYNHTNASGPNDRSVLDKIVPGYYHRLNEDGGVENSTCCSNTATEHRMMAKLIVDSLV- 482 (898)
T ss_pred HHHHHHHHHHHHCCCEEEEEeecccccccCccCcccccccCcHhhEeeCCCCCeecCCCCcCCCCCCHHHHHHHHHHHH-
Confidence 368899999999999999744 22110 0 0 00 01223445555542
Q ss_pred hhcCCCCCCcCCCCCccCeEeeecCCCC-chhHHHHHHHHHhh
Q 035598 128 NFLGGHSSSRPLGPAVLDGIDLDIEGGT-SQHWDELARFLAGY 169 (298)
Q Consensus 128 ~f~~g~s~~~~~~~~~~DGiDiD~E~p~-~~~~~~li~~LR~~ 169 (298)
-.+++|++||+-||.-.-. .+.+..+.++||+.
T Consensus 483 ---------~W~~ey~VDGFRfDlm~~~~~~f~~~~~~~l~~i 516 (898)
T TIGR02103 483 ---------VWAKDYKVDGFRFDLMGHHPKAQMLAAREAIKAL 516 (898)
T ss_pred ---------HHHHHcCCCEEEEechhhCCHHHHHHHHHHHHHh
Confidence 4568999999999976433 35566677777765
No 45
>PRK03705 glycogen debranching enzyme; Provisional
Probab=79.91 E-value=2.7 Score=43.63 Aligned_cols=21 Identities=19% Similarity=0.491 Sum_probs=18.5
Q ss_pred cchHHHHHHHHhCCCeEEEEE
Q 035598 83 TGLSSDIKSCQAKGVKVLLSL 103 (298)
Q Consensus 83 ~~l~~~i~~~q~~g~KVllSi 103 (298)
.+|++.|+.||++|+||+|=+
T Consensus 242 ~efk~LV~~~H~~GI~VIlDv 262 (658)
T PRK03705 242 DEFRDAVKALHKAGIEVILDV 262 (658)
T ss_pred HHHHHHHHHHHHCCCEEEEEE
Confidence 479999999999999999854
No 46
>TIGR02102 pullulan_Gpos pullulanase, extracellular, Gram-positive. Pullulan is an unusual, industrially important polysaccharide in which short alpha-1,4 chains (maltotriose) are connected in alpha-1,6 linkages. Enzymes that cleave alpha-1,6 linkages in pullulan and release maltotriose are called pullulanases although pullulan itself may not be the natural substrate. In contrast, a glycogen debranching enzyme such GlgX, homologous to this family, can release glucose at alpha,1-6 linkages from glycogen first subjected to limit degradation by phosphorylase. Characterized members of this family include a surface-located pullulanase from Streptococcus pneumoniae (PubMed:11083842) and an extracellular bifunctional amylase/pullulanase with C-terminal pullulanase activity (PubMed:8798645).
Probab=79.33 E-value=8.1 Score=42.47 Aligned_cols=77 Identities=14% Similarity=0.230 Sum_probs=47.1
Q ss_pred cchHHHHHHHHhCCCeEEEEEe-----------CC----------CCC----C---CC--CCHHHHHHHHHHHHHhhcCC
Q 035598 83 TGLSSDIKSCQAKGVKVLLSLG-----------GA----------AGS----Y---SL--TSTQDAKQVATYLWNNFLGG 132 (298)
Q Consensus 83 ~~l~~~i~~~q~~g~KVllSiG-----------G~----------~~~----~---~~--~~~~~~~~fa~~v~~~f~~g 132 (298)
.+|++.|+.||++|++|+|=+= +. .+. + .+ ..+.-|+-+.+++.
T Consensus 555 ~EfK~LV~alH~~GI~VILDVVyNHt~~~~~f~~~~p~Yy~~~~~~G~~~~~~~g~~l~~e~~~vrk~iiDsl~------ 628 (1111)
T TIGR02102 555 AEFKNLINEIHKRGMGVILDVVYNHTAKVYIFEDLEPNYYHFMDADGTPRTSFGGGRLGTTHEMSRRILVDSIK------ 628 (1111)
T ss_pred HHHHHHHHHHHHCCCEEEEecccccccccccccccCCCceEeeCCCCCcccccCCCCCCcCCHHHHHHHHHHHH------
Confidence 4789999999999999998631 10 000 0 01 11334555555553
Q ss_pred CCCCcCCCCCccCeEeeecCCC-CchhHHHHHHHHHhh
Q 035598 133 HSSSRPLGPAVLDGIDLDIEGG-TSQHWDELARFLAGY 169 (298)
Q Consensus 133 ~s~~~~~~~~~~DGiDiD~E~p-~~~~~~~li~~LR~~ 169 (298)
-.+++|++||+-||.-.- ....+..+.+++|+.
T Consensus 629 ----yWv~ey~VDGFRfDl~g~~d~~~~~~~~~~l~~~ 662 (1111)
T TIGR02102 629 ----YLVDEFKVDGFRFDMMGDHDAASIEIAYKEAKAI 662 (1111)
T ss_pred ----HHHHhcCCcEEEEeccccCCHHHHHHHHHHHHHh
Confidence 457899999999997532 123445555666654
No 47
>PRK07259 dihydroorotate dehydrogenase 1B; Reviewed
Probab=79.20 E-value=6.5 Score=36.36 Aligned_cols=64 Identities=14% Similarity=0.175 Sum_probs=41.3
Q ss_pred hHHHHHHHH-hCCCeEEEEEeCCCCCCCCCCHHHHHHHHHHHHHhhcCCCCCCcCCCCCc-cCeEeeecCCCCc------
Q 035598 85 LSSDIKSCQ-AKGVKVLLSLGGAAGSYSLTSTQDAKQVATYLWNNFLGGHSSSRPLGPAV-LDGIDLDIEGGTS------ 156 (298)
Q Consensus 85 l~~~i~~~q-~~g~KVllSiGG~~~~~~~~~~~~~~~fa~~v~~~f~~g~s~~~~~~~~~-~DGiDiD~E~p~~------ 156 (298)
..+.+...+ +.++.|.+||+|.. .+.|++.. +-++++| +|||+|+.-.|..
T Consensus 79 ~~~~~~~~~~~~~~p~i~si~g~~----------~~~~~~~a-----------~~~~~aG~~D~iElN~~cP~~~~gg~~ 137 (301)
T PRK07259 79 FIEEELPWLEEFDTPIIANVAGST----------EEEYAEVA-----------EKLSKAPNVDAIELNISCPNVKHGGMA 137 (301)
T ss_pred HHHHHHHHHhccCCcEEEEeccCC----------HHHHHHHH-----------HHHhccCCcCEEEEECCCCCCCCCccc
Confidence 344454433 34788999999842 23565544 3367888 9999998865532
Q ss_pred -----hhHHHHHHHHHhh
Q 035598 157 -----QHWDELARFLAGY 169 (298)
Q Consensus 157 -----~~~~~li~~LR~~ 169 (298)
+...++++++|+.
T Consensus 138 ~~~~~~~~~eiv~~vr~~ 155 (301)
T PRK07259 138 FGTDPELAYEVVKAVKEV 155 (301)
T ss_pred cccCHHHHHHHHHHHHHh
Confidence 2345677777776
No 48
>cd04740 DHOD_1B_like Dihydroorotate dehydrogenase (DHOD) class 1B FMN-binding domain. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively.
Probab=77.71 E-value=6.6 Score=36.18 Aligned_cols=65 Identities=17% Similarity=0.239 Sum_probs=43.0
Q ss_pred chHHHHHHHHh-CCCeEEEEEeCCCCCCCCCCHHHHHHHHHHHHHhhcCCCCCCcCCCCCccCeEeeecCCCCc------
Q 035598 84 GLSSDIKSCQA-KGVKVLLSLGGAAGSYSLTSTQDAKQVATYLWNNFLGGHSSSRPLGPAVLDGIDLDIEGGTS------ 156 (298)
Q Consensus 84 ~l~~~i~~~q~-~g~KVllSiGG~~~~~~~~~~~~~~~fa~~v~~~f~~g~s~~~~~~~~~~DGiDiD~E~p~~------ 156 (298)
.+.+.++.+++ .+.++++||+|.. .+.|++.+ +.++++|+|+|+|++-.|..
T Consensus 76 ~~~~~~~~~~~~~~~p~ivsi~g~~----------~~~~~~~a-----------~~~~~~G~d~iElN~~cP~~~~~g~~ 134 (296)
T cd04740 76 AFLEELLPWLREFGTPVIASIAGST----------VEEFVEVA-----------EKLADAGADAIELNISCPNVKGGGMA 134 (296)
T ss_pred HHHHHHHHHhhcCCCcEEEEEecCC----------HHHHHHHH-----------HHHHHcCCCEEEEECCCCCCCCCccc
Confidence 34455655543 5789999999842 23455544 33567899999999887752
Q ss_pred -----hhHHHHHHHHHhh
Q 035598 157 -----QHWDELARFLAGY 169 (298)
Q Consensus 157 -----~~~~~li~~LR~~ 169 (298)
.....+++++|+.
T Consensus 135 ~~~~~~~~~eiv~~vr~~ 152 (296)
T cd04740 135 FGTDPEAVAEIVKAVKKA 152 (296)
T ss_pred ccCCHHHHHHHHHHHHhc
Confidence 2344677777776
No 49
>TIGR02100 glgX_debranch glycogen debranching enzyme GlgX. This family consists of the GlgX protein from the E. coli glycogen operon and probable equivalogs from other prokaryotic species. GlgX is not required for glycogen biosynthesis, but instead acts as a debranching enzyme for glycogen catabolism. This model distinguishes GlgX from pullanases and other related proteins that also operate on alpha-1,6-glycosidic linkages. In the wide band between the trusted and noise cutoffs are functionally similar enzymes, mostly from plants, that act similarly but usually are termed isoamylase.
Probab=77.55 E-value=3.8 Score=42.72 Aligned_cols=22 Identities=14% Similarity=0.451 Sum_probs=19.2
Q ss_pred ccchHHHHHHHHhCCCeEEEEE
Q 035598 82 CTGLSSDIKSCQAKGVKVLLSL 103 (298)
Q Consensus 82 ~~~l~~~i~~~q~~g~KVllSi 103 (298)
..+|++.|++||++|++|+|=+
T Consensus 244 ~~efk~LV~~~H~~GI~VIlDv 265 (688)
T TIGR02100 244 VAEFKTMVRALHDAGIEVILDV 265 (688)
T ss_pred HHHHHHHHHHHHHCCCEEEEEE
Confidence 4579999999999999999854
No 50
>PRK14705 glycogen branching enzyme; Provisional
Probab=77.22 E-value=4.7 Score=44.59 Aligned_cols=62 Identities=15% Similarity=0.030 Sum_probs=34.9
Q ss_pred cccccCCCCccEEEEceeeecCCC---CCccccCCCCCCCCCCCccchHHHHHHHHhCCCeEEEEE
Q 035598 41 LKETCSTGNYEYVILSFLATFGNG---QTPMINLAGHCDPYSNGCTGLSSDIKSCQAKGVKVLLSL 103 (298)
Q Consensus 41 l~~~~~~~~~thii~AF~~~~~~g---~~~~~~~~~~~~~~~~~~~~l~~~i~~~q~~g~KVllSi 103 (298)
+.+++..-.+|||-+-=+.-++.+ ++...++. ..++.-++..+|+..|++||++|++|+|=+
T Consensus 771 lldYlk~LGvt~IeLmPv~e~p~~~swGY~~~~y~-ap~~ryGt~~dfk~lVd~~H~~GI~VILD~ 835 (1224)
T PRK14705 771 LVDYVKWLGFTHVEFMPVAEHPFGGSWGYQVTSYF-APTSRFGHPDEFRFLVDSLHQAGIGVLLDW 835 (1224)
T ss_pred HHHHHHHhCCCEEEECccccCCCCCCCCCCccccC-CcCcccCCHHHHHHHHHHHHHCCCEEEEEe
Confidence 345666678899866422111111 11111111 001112355789999999999999999863
No 51
>cd06602 GH31_MGAM_SI_GAA This family includes the following three closely related glycosyl hydrolase family 31 (GH31) enzymes: maltase-glucoamylase (MGAM), sucrase-isomaltase (SI), and lysosomal acid alpha-glucosidase (GAA), also known as acid-maltase. MGAM is one of the two enzymes responsible for catalyzing the last glucose-releasing step in starch digestion. SI is implicated in the digestion of dietary starch and major disaccharides such as sucrose and isomaltose, while GAA degrades glycogen in the lysosome, cleaving both alpha-1,4 and alpha-1,6 glucosidic linkages. MGAM and SI are anchored to small-intestinal brush-border epithelial cells. The absence of SI from the brush border membrane or its malfunction is associated with malabsorption disorders such as congenital sucrase-isomaltase deficiency (CSID). The domain architectures of MGAM and SI include two tandem GH31 catalytic domains, an N-terminal domain found near the membrane-bound end, and a C-terminal luminal domain. Both of
Probab=76.22 E-value=8.6 Score=36.46 Aligned_cols=64 Identities=14% Similarity=0.141 Sum_probs=45.6
Q ss_pred ccch--HHHHHHHHhCCCeEEEEE------e---------------C---------------CCCC---CCCCCHHHHHH
Q 035598 82 CTGL--SSDIKSCQAKGVKVLLSL------G---------------G---------------AAGS---YSLTSTQDAKQ 120 (298)
Q Consensus 82 ~~~l--~~~i~~~q~~g~KVllSi------G---------------G---------------~~~~---~~~~~~~~~~~ 120 (298)
++.. .+.|+.+|++|+||++.+ . | |.+. ..|++++.|+-
T Consensus 63 FPdp~~~~mi~~L~~~G~k~~~~i~P~v~~~~~~~~~~~~~e~~~~g~~v~~~~g~~~~~~~w~g~~~~~Dftnp~a~~w 142 (339)
T cd06602 63 FPGLKMPEFVDELHANGQHYVPILDPAISANEPTGSYPPYDRGLEMDVFIKNDDGSPYIGKVWPGYTVFPDFLNPNTQEW 142 (339)
T ss_pred CCCccHHHHHHHHHHCCCEEEEEEeCccccCcCCCCCHHHHHHHHCCeEEECCCCCEEEEEeCCCCCcCcCCCCHHHHHH
Confidence 4555 888999999999999988 1 1 1111 24566777777
Q ss_pred HHHHHHHhhcCCCCCCcCCCCCccCeEeeecCCCC
Q 035598 121 VATYLWNNFLGGHSSSRPLGPAVLDGIDLDIEGGT 155 (298)
Q Consensus 121 fa~~v~~~f~~g~s~~~~~~~~~~DGiDiD~E~p~ 155 (298)
+.+.+. +++.+.|+||+=+|.-.|.
T Consensus 143 w~~~~~----------~~~~~~Gvdg~w~D~~Ep~ 167 (339)
T cd06602 143 WTDEIK----------DFHDQVPFDGLWIDMNEPS 167 (339)
T ss_pred HHHHHH----------HHHhcCCCcEEEecCCCCc
Confidence 766553 4567899999999988775
No 52
>PLN02447 1,4-alpha-glucan-branching enzyme
Probab=75.91 E-value=8.3 Score=40.60 Aligned_cols=23 Identities=22% Similarity=0.333 Sum_probs=20.0
Q ss_pred CccchHHHHHHHHhCCCeEEEEE
Q 035598 81 GCTGLSSDIKSCQAKGVKVLLSL 103 (298)
Q Consensus 81 ~~~~l~~~i~~~q~~g~KVllSi 103 (298)
+..+|++.|++||++|++|+|=+
T Consensus 298 tp~dlk~LVd~aH~~GI~VilDv 320 (758)
T PLN02447 298 TPEDLKYLIDKAHSLGLRVLMDV 320 (758)
T ss_pred CHHHHHHHHHHHHHCCCEEEEEe
Confidence 45689999999999999999864
No 53
>PRK10785 maltodextrin glucosidase; Provisional
Probab=75.21 E-value=18 Score=37.07 Aligned_cols=24 Identities=21% Similarity=0.296 Sum_probs=20.6
Q ss_pred CCccchHHHHHHHHhCCCeEEEEE
Q 035598 80 NGCTGLSSDIKSCQAKGVKVLLSL 103 (298)
Q Consensus 80 ~~~~~l~~~i~~~q~~g~KVllSi 103 (298)
++.+.|.+.|++||++|+||+|=+
T Consensus 223 Gt~~df~~Lv~~aH~rGikVilD~ 246 (598)
T PRK10785 223 GGDAALLRLRHATQQRGMRLVLDG 246 (598)
T ss_pred CCHHHHHHHHHHHHHCCCEEEEEE
Confidence 456789999999999999999864
No 54
>PF14871 GHL6: Hypothetical glycosyl hydrolase 6
Probab=73.99 E-value=8.9 Score=31.35 Aligned_cols=21 Identities=19% Similarity=0.545 Sum_probs=18.0
Q ss_pred cchHHHHHHHHhCCCeEEEEE
Q 035598 83 TGLSSDIKSCQAKGVKVLLSL 103 (298)
Q Consensus 83 ~~l~~~i~~~q~~g~KVllSi 103 (298)
.-|.+.|+.||++|+||++-+
T Consensus 44 Dllge~v~a~h~~Girv~ay~ 64 (132)
T PF14871_consen 44 DLLGEQVEACHERGIRVPAYF 64 (132)
T ss_pred CHHHHHHHHHHHCCCEEEEEE
Confidence 567899999999999999654
No 55
>cd06523 GH25_PlyB-like PlyB is a bacteriophage endolysin that displays potent lytic activity toward Bacillus anthracis. PlyB has an N-terminal glycosyl hydrolase family 25 (GH25) catalytic domain and a C-terminal bacterial SH3-like domain, SH3b. Both domains are required for effective catalytic activity. Endolysins are produced by bacteriophages at the end of their life cycle and participate in lysing the bacterial cell in order to release the newly formed progeny. Endolysins (also referred to as endo-N-acetylmuramidases or peptidoglycan hydrolases) degrade bacterial cell walls by catalyzing the hydrolysis of 1,4-beta-linkages between N-acetylmuramic acid and N-acetyl-D-glucosamine residues.
Probab=73.00 E-value=17 Score=31.02 Aligned_cols=68 Identities=25% Similarity=0.266 Sum_probs=40.2
Q ss_pred cchHHHHHHHHhCCCeEEEEEeCCCCCCCC---CCHHHHHHHHHHHHHhhcCCCCCCcCCCCCccCeEeeecCCCCch--
Q 035598 83 TGLSSDIKSCQAKGVKVLLSLGGAAGSYSL---TSTQDAKQVATYLWNNFLGGHSSSRPLGPAVLDGIDLDIEGGTSQ-- 157 (298)
Q Consensus 83 ~~l~~~i~~~q~~g~KVllSiGG~~~~~~~---~~~~~~~~fa~~v~~~f~~g~s~~~~~~~~~~DGiDiD~E~p~~~-- 157 (298)
+.+.+.++.|++.|++| | .|.| .+.+++++-|+++++ .+++ .-.=+-||+|.+...
T Consensus 39 ~~f~~n~~~a~~aGl~v----G----~Yhf~~~~~~~~a~~eA~~f~~----------~~~~-~~~~~~lD~E~~~~~~~ 99 (177)
T cd06523 39 LKYKNNIKEFKKRGIPF----G----VYAFARGTSTADAKAEARDFYN----------RANK-KPTFYVLDVEVTSMSDM 99 (177)
T ss_pred HHHHHHHHHHHHcCCCe----E----EEEEeccCCHHHHHHHHHHHHH----------HhcC-CCceEEEeeccCCcchH
Confidence 57889999999999877 2 2322 233344445555442 1222 222367899987643
Q ss_pred --hHHHHHHHHHhh
Q 035598 158 --HWDELARFLAGY 169 (298)
Q Consensus 158 --~~~~li~~LR~~ 169 (298)
...+|+++++++
T Consensus 100 ~~~~~~f~~~v~~~ 113 (177)
T cd06523 100 NAGVQAFISELRRL 113 (177)
T ss_pred HHHHHHHHHHHHHc
Confidence 345566666665
No 56
>cd02932 OYE_YqiM_FMN Old yellow enzyme (OYE) YqjM-like FMN binding domain. YqjM is involved in the oxidative stress response of Bacillus subtilis. Like the other OYE members, each monomer of YqjM contains FMN as a non-covalently bound cofactor and uses NADPH as a reducing agent. The YqjM enzyme exists as a homotetramer that is assembled as a dimer of catalytically dependent dimers, while other OYE members exist only as monomers or dimers. Moreover, the protein displays a shared active site architecture where an arginine finger at the COOH terminus of one monomer extends into the active site of the adjacent monomer and is directly involved in substrate recognition. Another remarkable difference in the binding of the ligand in YqjM is represented by the contribution of the NH2-terminal tyrosine instead of a COOH-terminal tyrosine in OYE and its homologs.
Probab=72.92 E-value=22 Score=33.54 Aligned_cols=22 Identities=18% Similarity=0.282 Sum_probs=17.3
Q ss_pred ccchHHHHHHHHhCCCeEEEEE
Q 035598 82 CTGLSSDIKSCQAKGVKVLLSL 103 (298)
Q Consensus 82 ~~~l~~~i~~~q~~g~KVllSi 103 (298)
.+.+.+....+|+.|-|+++=|
T Consensus 76 ~~~~~~l~~~vh~~G~~~~~QL 97 (336)
T cd02932 76 IEALKRIVDFIHSQGAKIGIQL 97 (336)
T ss_pred HHHHHHHHHHHHhcCCcEEEEc
Confidence 3556677778999999998776
No 57
>TIGR00736 nifR3_rel_arch TIM-barrel protein, putative. Members of this family show a distant relationship by PSI-BLAST to alpha/beta (TIM) barrel enzymes such as dihydroorotate dehydrogenase and glycolate oxidase. At least two closely related but well-separable families among the bacteria, the nifR3/yhdG family and the yjbN family, share a more distant relationship to this family of shorter, exclusively archaeal proteins.
Probab=71.92 E-value=67 Score=28.86 Aligned_cols=95 Identities=16% Similarity=0.157 Sum_probs=55.6
Q ss_pred chHHHHHHHHhCCCeEEEEEeCCCCCCCCCCHHHHHHHHHHHHHhhcCCCCCCcCCCCCccCeEeeecCCCCc-------
Q 035598 84 GLSSDIKSCQAKGVKVLLSLGGAAGSYSLTSTQDAKQVATYLWNNFLGGHSSSRPLGPAVLDGIDLDIEGGTS------- 156 (298)
Q Consensus 84 ~l~~~i~~~q~~g~KVllSiGG~~~~~~~~~~~~~~~fa~~v~~~f~~g~s~~~~~~~~~~DGiDiD~E~p~~------- 156 (298)
-+.+++..++ .+.+|.+++||. ++++-...+..+ .+ ++|+|||+.-.|.+
T Consensus 56 ~i~~e~~~~~-~~~~vivnv~~~-------~~ee~~~~a~~v--------------~~-~~d~IdiN~gCP~~~v~~~g~ 112 (231)
T TIGR00736 56 YIIEQIKKAE-SRALVSVNVRFV-------DLEEAYDVLLTI--------------AE-HADIIEINAHCRQPEITEIGI 112 (231)
T ss_pred HHHHHHHHHh-hcCCEEEEEecC-------CHHHHHHHHHHH--------------hc-CCCEEEEECCCCcHHHcCCCC
Confidence 3567888886 456999999984 333333444433 23 59999999999873
Q ss_pred --------hhHHHHHHHHHhhhhCCCceEEEEcCCCCCCc-c--hhhhhhhcCCCceEEee
Q 035598 157 --------QHWDELARFLAGYSQKGKKVYVTAAPQCPFPD-A--WIGNALKTGVFDYVWVQ 206 (298)
Q Consensus 157 --------~~~~~li~~LR~~~~~g~~~llT~Ap~~~~~~-~--~~~~~l~~~~~D~invq 206 (298)
+....+++++|+. +....+=+-|.. ++ . .+...+....+|+|.|-
T Consensus 113 G~~Ll~dp~~l~~iv~av~~~---~~PVsvKiR~~~--~~~~~~~~a~~l~~aGad~i~Vd 168 (231)
T TIGR00736 113 GQELLKNKELLKEFLTKMKEL---NKPIFVKIRGNC--IPLDELIDALNLVDDGFDGIHVD 168 (231)
T ss_pred chhhcCCHHHHHHHHHHHHcC---CCcEEEEeCCCC--CcchHHHHHHHHHHcCCCEEEEe
Confidence 2344566666632 233333344432 21 1 12223445789999883
No 58
>cd06417 GH25_LysA-like LysA is a cell wall endolysin produced by Lactobacillus fermentum, which degrades bacterial cell walls by catalyzing the hydrolysis of 1,4-beta-linkages between N-acetylmuramic acid and N-acetyl-D-glucosamine residues. The N-terminal glycosyl hydrolase family 25 (GH25) domain of LysA has sequence similarity with other murein hydrolase catalytic domains while the C-terminal domain has sequence similarity with putative bacterial cell wall-binding SH3b domains. This domain family also includes LysL of Lactococcus lactis.
Probab=69.77 E-value=15 Score=31.77 Aligned_cols=65 Identities=15% Similarity=0.085 Sum_probs=38.9
Q ss_pred cchHHHHHHHHhCCCeEEEEEeCCCCCCCCCC----HHHHHHHHHHHHHhhcCCCCCCcCCCCCcc-CeEeeecCCCCc-
Q 035598 83 TGLSSDIKSCQAKGVKVLLSLGGAAGSYSLTS----TQDAKQVATYLWNNFLGGHSSSRPLGPAVL-DGIDLDIEGGTS- 156 (298)
Q Consensus 83 ~~l~~~i~~~q~~g~KVllSiGG~~~~~~~~~----~~~~~~fa~~v~~~f~~g~s~~~~~~~~~~-DGiDiD~E~p~~- 156 (298)
+.+.+.++.+++.|++| | .|.|.. .++++.|.+.+ +.+.. .-+-||+|.+..
T Consensus 36 ~~f~~n~~~A~~aGl~~----G----~Yhf~~~~~a~~qA~~f~~~~--------------~~~~~~~~~~lD~E~~~~~ 93 (195)
T cd06417 36 PSWRSQAAQAIAAGKLL----G----LYHYANGGNAIAEADYFLNNI--------------KGYVGKAVLVLDWESYQNS 93 (195)
T ss_pred hHHHHHHHHHHHcCCce----E----EEEECCCCCHHHHHHHHHHHh--------------ccccCCCcEEEEeeCCCCC
Confidence 56889999999999876 2 233322 23455566554 22211 246789998763
Q ss_pred -----hhHHHHHHHHHhh
Q 035598 157 -----QHWDELARFLAGY 169 (298)
Q Consensus 157 -----~~~~~li~~LR~~ 169 (298)
.....|+++++++
T Consensus 94 ~~~~~~~~~~f~~~v~~~ 111 (195)
T cd06417 94 AWGNSAWARQWVNRVHEL 111 (195)
T ss_pred chHHHHHHHHHHHHHHHH
Confidence 2344667777665
No 59
>cd02931 ER_like_FMN Enoate reductase (ER)-like FMN-binding domain. Enoate reductase catalyzes the NADH-dependent reduction of carbon-carbon double bonds of several molecules, including nonactivated 2-enoates, alpha,beta-unsaturated aldehydes, cyclic ketones, and methylketones. ERs are similar to 2,4-dienoyl-CoA reductase from E. coli and to the old yellow enzyme from Saccharomyces cerevisiae.
Probab=69.42 E-value=29 Score=33.41 Aligned_cols=21 Identities=24% Similarity=0.316 Sum_probs=17.5
Q ss_pred cchHHHHHHHHhCCCeEEEEE
Q 035598 83 TGLSSDIKSCQAKGVKVLLSL 103 (298)
Q Consensus 83 ~~l~~~i~~~q~~g~KVllSi 103 (298)
+.+++.++.+|+.|-|+++=|
T Consensus 83 ~~~k~l~davh~~G~~i~~QL 103 (382)
T cd02931 83 RTAKEMTERVHAYGTKIFLQL 103 (382)
T ss_pred HHHHHHHHHHHHcCCEEEEEc
Confidence 456777788999999999888
No 60
>PF14883 GHL13: Hypothetical glycosyl hydrolase family 13
Probab=67.52 E-value=1.1e+02 Score=28.60 Aligned_cols=210 Identities=19% Similarity=0.227 Sum_probs=105.3
Q ss_pred cccccCCCCccEEEE-ceeeecCCCCCccccCCCCCCCCCCCccchHHHHH-HHHh-CCCeEEEEEe--CCC--------
Q 035598 41 LKETCSTGNYEYVIL-SFLATFGNGQTPMINLAGHCDPYSNGCTGLSSDIK-SCQA-KGVKVLLSLG--GAA-------- 107 (298)
Q Consensus 41 l~~~~~~~~~thii~-AF~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~i~-~~q~-~g~KVllSiG--G~~-------- 107 (298)
|.+.+-.-++++|.+ ||..+.+||....+-|.+..-|. -..+...+. .++. .|+||..=+. ++.
T Consensus 22 l~~ri~~~~~~tV~Lqaf~d~~gdg~~~~~YFpnr~lpv---raDlf~rvawql~tr~~v~VyAWMPvlaf~lp~~~~~~ 98 (294)
T PF14883_consen 22 LIQRIKDMGINTVYLQAFADPDGDGNADAVYFPNRHLPV---RADLFNRVAWQLRTRAGVKVYAWMPVLAFDLPKVKRAD 98 (294)
T ss_pred HHHHHHHcCCCEEEEEeeeCCCCCCceeeEEcCCCCCch---HHHHHHHHHHHHhhhhCCEEEEeeehhhccCCCcchhh
Confidence 445555667788776 89888888865555554332221 123334444 5553 4899864333 110
Q ss_pred ---------CCC-CCC--CHHHHHHHHHHHHHhhcCCCCCCcCCCCC-ccCeEee-------ecCCCC----------ch
Q 035598 108 ---------GSY-SLT--STQDAKQVATYLWNNFLGGHSSSRPLGPA-VLDGIDL-------DIEGGT----------SQ 157 (298)
Q Consensus 108 ---------~~~-~~~--~~~~~~~fa~~v~~~f~~g~s~~~~~~~~-~~DGiDi-------D~E~p~----------~~ 157 (298)
..+ .++ +++.| +.+..|. +=+..| .||||=| |+|.|. ++
T Consensus 99 ~~~~~~~~~~~y~RLSPf~p~~r-~~I~~IY----------eDLA~y~~fdGILFhDDa~L~D~E~~~~~~~~~~~~Kt~ 167 (294)
T PF14883_consen 99 EVRTDRPDPDGYRRLSPFDPEAR-QIIKEIY----------EDLARYSKFDGILFHDDAVLSDFEIAAIRQNPADRQKTR 167 (294)
T ss_pred hccccCCCCCCceecCCCCHHHH-HHHHHHH----------HHHHhhCCCCeEEEcCCccccchhhhhhccChhhHHHHH
Confidence 001 121 24433 3344443 334455 8999977 466432 12
Q ss_pred hHHHHHHHHHhhhh-CCCceEEE-----EcCCC-CCCcchhhhhhh--cCCCceEEeeecCCCCCCCCCCChhh-HHHHH
Q 035598 158 HWDELARFLAGYSQ-KGKKVYVT-----AAPQC-PFPDAWIGNALK--TGVFDYVWVQFYNNPPCQYSSGNIGN-LLNAW 227 (298)
Q Consensus 158 ~~~~li~~LR~~~~-~g~~~llT-----~Ap~~-~~~~~~~~~~l~--~~~~D~invq~Yn~~~~~~~~~~~~~-~~~~~ 227 (298)
....|..+|++... ..++ +-| +-|.- |..+.++...+. .+..||.-||..-... ...++.. +.+-+
T Consensus 168 ~Li~ft~eL~~~v~~~rp~-lkTARNiya~pvl~P~se~WfAQnl~~fl~~YD~taimAMPymE---~~~~~~~WL~~Lv 243 (294)
T PF14883_consen 168 ALIDFTMELAAAVRRYRPD-LKTARNIYAEPVLNPESEAWFAQNLDDFLKAYDYTAIMAMPYME---QAEDPEQWLAQLV 243 (294)
T ss_pred HHHHHHHHHHHHHHHhCcc-chhhhcccccccCCcchhhHHHHhHHHHHHhCCeeheeccchhc---cccCHHHHHHHHH
Confidence 34566666666431 1111 111 11211 111223322221 2578999998753221 0112222 12223
Q ss_pred HHHhc-CCCCCeEEEeeecCCCCCCCCCcChHHHHHHHHHhhhc
Q 035598 228 KQWTS-DIPANKIFLGLPASPAAAGSGFIPTADLISKVLPAIKG 270 (298)
Q Consensus 228 ~~~~~-g~p~~KlvlG~p~~~~~a~~gy~~~~~l~~~~~~~~~~ 270 (298)
+.+.+ ..+.+|+|+=+.+..= -.+..++.++|.+. ++.++.
T Consensus 244 ~~v~~~p~~l~KtvFELQa~dw-r~~~~I~~~~L~~~-m~~L~~ 285 (294)
T PF14883_consen 244 DAVAARPGGLDKTVFELQAVDW-RTSKPIPSEELADW-MRQLQL 285 (294)
T ss_pred HHHHhcCCcccceEEEEeccCC-ccCCcCCHHHHHHH-HHHHHH
Confidence 33433 3346999999998632 23467999999764 566654
No 61
>cd06600 GH31_MGAM-like This family includes the following closely related glycosyl hydrolase family 31 (GH31) enzymes: maltase-glucoamylase (MGAM), sucrase-isomaltase (SI), lysosomal acid alpha-glucosidase (GAA), neutral alpha-glucosidase C (GANC), the alpha subunit of neutral alpha-glucosidase AB (GANAB), and alpha-glucosidase II. MGAM is one of the two enzymes responsible for catalyzing the last glucose-releasing step in starch digestion. SI is implicated in the digestion of dietary starch and major disaccharides such as sucrose and isomaltose, while GAA degrades glycogen in the lysosome, cleaving both alpha-1,4 and alpha-1,6 glucosidic linkages. MGAM and SI are anchored to small-intestinal brush-border epithelial cells. The absence of SI from the brush border membrane or its malfunction is associated with malabsorption disorders such as congenital sucrase-isomaltase deficiency (CSID). The domain architectures of MGAM and SI include two tandem GH31 catalytic domains, an N-terminal do
Probab=66.72 E-value=22 Score=33.27 Aligned_cols=65 Identities=20% Similarity=0.196 Sum_probs=45.9
Q ss_pred CccchHHHHHHHHhCCCeEEEEEe--------------------------C-------CCCC---CCCCCHHHHHHHHHH
Q 035598 81 GCTGLSSDIKSCQAKGVKVLLSLG--------------------------G-------AAGS---YSLTSTQDAKQVATY 124 (298)
Q Consensus 81 ~~~~l~~~i~~~q~~g~KVllSiG--------------------------G-------~~~~---~~~~~~~~~~~fa~~ 124 (298)
.++...+.|+.+|++|+||++.+= | |.|. ..|++++.|+-+.+.
T Consensus 62 ~FPdp~~~i~~l~~~g~k~~~~~~P~i~~~~~~~~~~~~~~~~~~v~~~~g~~~~~~~w~G~~~~~Dftnp~a~~ww~~~ 141 (317)
T cd06600 62 RFPEPKKLIDELHKRNVKLVTIVDPGIRVDQNYSPFLSGMDKGKFCEIESGELFVGKMWPGTTVYPDFTNPDTREWWAGL 141 (317)
T ss_pred cCCCHHHHHHHHHHCCCEEEEEeeccccCCCCChHHHHHHHCCEEEECCCCCeEEEeecCCCccccCCCChHHHHHHHHH
Confidence 355667889999999999997751 0 1111 235667777777666
Q ss_pred HHHhhcCCCCCCcCCCCCccCeEeeecCCCC
Q 035598 125 LWNNFLGGHSSSRPLGPAVLDGIDLDIEGGT 155 (298)
Q Consensus 125 v~~~f~~g~s~~~~~~~~~~DGiDiD~E~p~ 155 (298)
+. +++.+.|+||+=+|.-.|.
T Consensus 142 ~~----------~~~~~~gvdg~w~D~~Ep~ 162 (317)
T cd06600 142 FS----------EWLNSQGVDGIWLDMNEPS 162 (317)
T ss_pred HH----------HHhhcCCCceEEeeCCCCc
Confidence 53 4567899999999987765
No 62
>cd04734 OYE_like_3_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 3. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase. One member of this subgroup, the Sinorhizobium meliloti stachydrine utilization protein stcD, has been idenified as a putative N-methylproline demethylase.
Probab=65.76 E-value=38 Score=32.15 Aligned_cols=22 Identities=18% Similarity=0.407 Sum_probs=17.1
Q ss_pred cchHHHHHHHHhCCCeEEEEEe
Q 035598 83 TGLSSDIKSCQAKGVKVLLSLG 104 (298)
Q Consensus 83 ~~l~~~i~~~q~~g~KVllSiG 104 (298)
+.+.+.+..+|+.|-|+++=|.
T Consensus 77 ~~~~~l~~~vh~~g~~~~~Ql~ 98 (343)
T cd04734 77 PGFRRLAEAVHAHGAVIMIQLT 98 (343)
T ss_pred HHHHHHHHHHHhcCCeEEEecc
Confidence 4566777788999999987763
No 63
>cd02930 DCR_FMN 2,4-dienoyl-CoA reductase (DCR) FMN-binding domain. DCR in E. coli is an iron-sulfur flavoenzyme which contains FMN, FAD, and a 4Fe-4S cluster. It is also a monomer, unlike that of its eukaryotic counterparts which form homotetramers and lack the flavin and iron-sulfur cofactors. Metabolism of unsaturated fatty acids requires auxiliary enzymes in addition to those used in b-oxidation. After a given number of cycles through the b-oxidation pathway, those unsaturated fatty acyl-CoAs with double bonds at even-numbered carbon positions contain 2-trans, 4-cis double bonds that can not be modified by enoyl-CoA hydratase. DCR utilizes NADPH to remove the C4-C5 double bond. DCR can catalyze the reduction of both natural fatty acids with cis double bonds, as well as substrates containing trans double bonds. The reaction is initiated by hybrid transfer from NADPH to FAD, which in turn transfers electrons, one at a time, to FMN via the 4Fe-4S cluster. The fully reduced FMN provi
Probab=65.75 E-value=40 Score=31.97 Aligned_cols=21 Identities=24% Similarity=0.325 Sum_probs=16.8
Q ss_pred cchHHHHHHHHhCCCeEEEEE
Q 035598 83 TGLSSDIKSCQAKGVKVLLSL 103 (298)
Q Consensus 83 ~~l~~~i~~~q~~g~KVllSi 103 (298)
+.+.+.+..+|+.|.|+++=|
T Consensus 77 ~~~~~l~~~vh~~g~~~~~QL 97 (353)
T cd02930 77 AGHRLITDAVHAEGGKIALQI 97 (353)
T ss_pred HHHHHHHHHHHHcCCEEEeec
Confidence 456677778899999998777
No 64
>PRK02261 methylaspartate mutase subunit S; Provisional
Probab=63.71 E-value=19 Score=29.55 Aligned_cols=64 Identities=20% Similarity=0.278 Sum_probs=41.0
Q ss_pred CCcEEEEeCCCCCCCCcccccCCCCccEEEEceeeecCCCCCccccCCCCCCCCCCCccchHHHHHHHHhCCC-eEEEEE
Q 035598 25 AGGIAIYWGQNGNEGTLKETCSTGNYEYVILSFLATFGNGQTPMINLAGHCDPYSNGCTGLSSDIKSCQAKGV-KVLLSL 103 (298)
Q Consensus 25 ~~~vv~Y~g~~~~~~~l~~~~~~~~~thii~AF~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~i~~~q~~g~-KVllSi 103 (298)
.+-=+.|.|..-....+.+.+.....++|-+|+..... ...+.+.++.+++++. ++.+-+
T Consensus 30 ~G~eVi~LG~~vp~e~i~~~a~~~~~d~V~lS~~~~~~-------------------~~~~~~~~~~L~~~~~~~~~i~v 90 (137)
T PRK02261 30 AGFEVINLGVMTSQEEFIDAAIETDADAILVSSLYGHG-------------------EIDCRGLREKCIEAGLGDILLYV 90 (137)
T ss_pred CCCEEEECCCCCCHHHHHHHHHHcCCCEEEEcCccccC-------------------HHHHHHHHHHHHhcCCCCCeEEE
Confidence 34456787765444446666677788999998865311 1345566777777654 567788
Q ss_pred eCCC
Q 035598 104 GGAA 107 (298)
Q Consensus 104 GG~~ 107 (298)
||.-
T Consensus 91 GG~~ 94 (137)
T PRK02261 91 GGNL 94 (137)
T ss_pred ECCC
Confidence 9964
No 65
>cd06525 GH25_Lyc-like Lyc muramidase is an autolytic lysozyme (autolysin) from Clostridium acetobutylicum encoded by the lyc gene. Lyc has a glycosyl hydrolase family 25 (GH25) catalytic domain. Endo-N-acetylmuramidases are lysozymes (also referred to as peptidoglycan hydrolases) that degrade bacterial cell walls by catalyzing the hydrolysis of 1,4-beta-linkages between N-acetylmuramic acid and N-acetyl-D-glucosamine residues.
Probab=63.27 E-value=23 Score=30.23 Aligned_cols=65 Identities=17% Similarity=0.204 Sum_probs=37.8
Q ss_pred cchHHHHHHHHhCCCeEEEEEeCCCCCCCCC----C-HHHHHHHHHHHHHhhcCCCCCCcCCCCCccC-eEeeecCCCCc
Q 035598 83 TGLSSDIKSCQAKGVKVLLSLGGAAGSYSLT----S-TQDAKQVATYLWNNFLGGHSSSRPLGPAVLD-GIDLDIEGGTS 156 (298)
Q Consensus 83 ~~l~~~i~~~q~~g~KVllSiGG~~~~~~~~----~-~~~~~~fa~~v~~~f~~g~s~~~~~~~~~~D-GiDiD~E~p~~ 156 (298)
+.+...++.|++.|++| |. +.+. + .++++.|.+.+ ++++.+ -+=||+|....
T Consensus 38 ~~~~~~~~~a~~aGl~~----G~----Yhy~~~~~~a~~qA~~f~~~~--------------~~~~~~~~~~lD~E~~~~ 95 (184)
T cd06525 38 SYFNENYNGAKAAGLKV----GF----YHFLVGTSNPEEQAENFYNTI--------------KGKKMDLKPALDVEVNFG 95 (184)
T ss_pred HhHHHHHHHHHHCCCce----EE----EEEeeCCCCHHHHHHHHHHhc--------------cccCCCCCeEEEEecCCC
Confidence 46889999999999875 22 2221 1 23455555543 333332 35578998652
Q ss_pred -------hhHHHHHHHHHhh
Q 035598 157 -------QHWDELARFLAGY 169 (298)
Q Consensus 157 -------~~~~~li~~LR~~ 169 (298)
+....|+++++++
T Consensus 96 ~~~~~~~~~~~~f~~~v~~~ 115 (184)
T cd06525 96 LSKDELNDYVLRFIEEFEKL 115 (184)
T ss_pred CCHHHHHHHHHHHHHHHHHH
Confidence 2234566666665
No 66
>cd06522 GH25_AtlA-like AtlA is an autolysin found in Gram-positive lactic acid bacteria that degrades bacterial cell walls by catalyzing the hydrolysis of 1,4-beta-linkages between N-acetylmuramic acid and N-acetyl-D-glucosamine residues. This family includes the AtlA and Aml autolysins from Streptococcus mutans which have a C-terminal glycosyl hydrolase family 25 (GH25) catalytic domain as well as six tandem N-terminal repeats of the GBS (group B Streptococcus) Bsp-like peptidoglycan-binding domain. Other members of this family have one or more C-terminal peptidoglycan-binding domain(s) (SH3 or LysM) in addition to the GH25 domain.
Probab=61.70 E-value=23 Score=30.51 Aligned_cols=65 Identities=23% Similarity=0.264 Sum_probs=38.9
Q ss_pred cchHHHHHHHHhCCCeEEEEEeCCCCCCCC---CCH----HHHHHHHHHHHHhhcCCCCCCcCCCCCccC---eEeeecC
Q 035598 83 TGLSSDIKSCQAKGVKVLLSLGGAAGSYSL---TST----QDAKQVATYLWNNFLGGHSSSRPLGPAVLD---GIDLDIE 152 (298)
Q Consensus 83 ~~l~~~i~~~q~~g~KVllSiGG~~~~~~~---~~~----~~~~~fa~~v~~~f~~g~s~~~~~~~~~~D---GiDiD~E 152 (298)
+.+.+.++.|++.|++| | .|.| .+. ++++.|.+.+ ++++++ -+=||+|
T Consensus 42 ~~~~~n~~~A~~aGl~v----G----~Yhf~~~~~~~~a~~eA~~f~~~~--------------~~~~~~~~~~~~lD~E 99 (192)
T cd06522 42 PYAASQIANAKAAGLKV----S----AYHYAHYTSAADAQAEARYFANTA--------------KSLGLSKNTVMVADME 99 (192)
T ss_pred hHHHHHHHHHHHCCCee----E----EEEEEecCChHHHHHHHHHHHHHH--------------HHcCCCCCCceEEEee
Confidence 46789999999999987 2 2332 222 2244454443 333333 2457999
Q ss_pred CCCc-----hhHHHHHHHHHhh
Q 035598 153 GGTS-----QHWDELARFLAGY 169 (298)
Q Consensus 153 ~p~~-----~~~~~li~~LR~~ 169 (298)
.... +....|++++|+.
T Consensus 100 ~~~~~~~~~~~~~~F~~~v~~~ 121 (192)
T cd06522 100 DSSSSGNATANVNAFWQTMKAA 121 (192)
T ss_pred cCCCcchHHHHHHHHHHHHHHc
Confidence 8653 3446777777775
No 67
>cd06592 GH31_glucosidase_KIAA1161 KIAA1161 is an uncharacterized Homo sapiens protein with a glycosyl hydrolase family 31 (GH31) domain that is homologous to the Escherichia coli YihQ glucosidase. Orthologs of KIA1161 are found in eukaryotes and prokaryotes. In bacteria, YihQ (along with YihO) is important for bacterial O-antigen capsule assembly and translocation. Enzymes of the GH31 family possess a wide range of different hydrolytic activities including alpha-glucosidase (glucoamylase and sucrase-isomaltase), alpha-xylosidase, 6-alpha-glucosyltransferase, 3-alpha-isomaltosyltransferase and alpha-1,4-glucan lyase. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein.
Probab=61.35 E-value=18 Score=33.57 Aligned_cols=64 Identities=14% Similarity=0.104 Sum_probs=41.5
Q ss_pred CccchHHHHHHHHhCCCeEEEEEeCC--------------------------------CCC---CCCCCHHHHHHHHHHH
Q 035598 81 GCTGLSSDIKSCQAKGVKVLLSLGGA--------------------------------AGS---YSLTSTQDAKQVATYL 125 (298)
Q Consensus 81 ~~~~l~~~i~~~q~~g~KVllSiGG~--------------------------------~~~---~~~~~~~~~~~fa~~v 125 (298)
.++...+.++.+|++|+|+++.+==. .+. ..+.+++.|+-+.+.+
T Consensus 68 ~FPdp~~mi~~l~~~G~k~~l~i~P~i~~~s~~~~e~~~~g~~vk~~~g~~~~~~~~w~g~~~~~Dftnp~a~~w~~~~~ 147 (303)
T cd06592 68 KFPDPKGMIDQLHDLGFRVTLWVHPFINTDSENFREAVEKGYLVSEPSGDIPALTRWWNGTAAVLDFTNPEAVDWFLSRL 147 (303)
T ss_pred hCCCHHHHHHHHHHCCCeEEEEECCeeCCCCHHHHhhhhCCeEEECCCCCCCcccceecCCcceEeCCCHHHHHHHHHHH
Confidence 45677889999999999999864210 000 1244566666555544
Q ss_pred HHhhcCCCCCCcCCCCCccCeEeeecCCC
Q 035598 126 WNNFLGGHSSSRPLGPAVLDGIDLDIEGG 154 (298)
Q Consensus 126 ~~~f~~g~s~~~~~~~~~~DGiDiD~E~p 154 (298)
. +++.++|+||+=+|.-.|
T Consensus 148 ~----------~~~~~~Gvdg~w~D~~E~ 166 (303)
T cd06592 148 K----------SLQEKYGIDSFKFDAGEA 166 (303)
T ss_pred H----------HHHHHhCCcEEEeCCCCc
Confidence 2 456678888888887665
No 68
>cd06599 GH31_glycosidase_Aec37 Glycosyl hydrolase family 31 (GH31) domain of a bacterial protein family represented by Escherichia coli protein Aec37. The gene encoding Aec37 (aec-37) is located within a genomic island (AGI-3) isolated from the extraintestinal avian pathogenic Escherichia coli strain BEN2908. The function of Aec37 and its orthologs is unknown; however, deletion of a region of the genome that includes aec-37 affects the assimilation of seven carbohydrates, decreases growth rate of the strain in minimal medium containing galacturonate or trehalose, and attenuates the virulence of E. coli BEN2908 in chickens. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein.
Probab=61.09 E-value=23 Score=33.08 Aligned_cols=23 Identities=4% Similarity=0.206 Sum_probs=19.3
Q ss_pred CccchHHHHHHHHhCCCeEEEEE
Q 035598 81 GCTGLSSDIKSCQAKGVKVLLSL 103 (298)
Q Consensus 81 ~~~~l~~~i~~~q~~g~KVllSi 103 (298)
.++...+.|+.+|++|+||++++
T Consensus 71 ~FPdp~~mi~~L~~~g~k~~~~i 93 (317)
T cd06599 71 RFPDPAAFVAKFHERGIRLAPNI 93 (317)
T ss_pred cCCCHHHHHHHHHHCCCEEEEEe
Confidence 45677899999999999999854
No 69
>cd06598 GH31_transferase_CtsZ CtsZ (cyclic tetrasaccharide-synthesizing enzyme Z) is a bacterial 6-alpha-glucosyltransferase, first identified in Arthrobacter globiformis, that produces cyclic tetrasaccharides together with a closely related enzyme CtsY. CtsZ and CtsY both have a glycosyl hydrolase family 31 (GH31) catalytic domain. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein.
Probab=60.98 E-value=29 Score=32.48 Aligned_cols=63 Identities=17% Similarity=0.081 Sum_probs=43.5
Q ss_pred CccchHHHHHHHHhCCCeEEEEE----------------eCC----------------CCC---CCCCCHHHHHHHHHHH
Q 035598 81 GCTGLSSDIKSCQAKGVKVLLSL----------------GGA----------------AGS---YSLTSTQDAKQVATYL 125 (298)
Q Consensus 81 ~~~~l~~~i~~~q~~g~KVllSi----------------GG~----------------~~~---~~~~~~~~~~~fa~~v 125 (298)
.++...+.|+.+|++|+||++.+ .|. .+. ..|++++.|+-|.+.+
T Consensus 68 ~FPdp~~mi~~L~~~G~k~~~~v~P~v~~~~~~y~e~~~~g~l~~~~~~~~~~~~~~w~g~~~~~Dftnp~a~~w~~~~~ 147 (317)
T cd06598 68 AFPDPAGMIADLAKKGVKTIVITEPFVLKNSKNWGEAVKAGALLKKDQGGVPTLFDFWFGNTGLIDWFDPAAQAWFHDNY 147 (317)
T ss_pred cCCCHHHHHHHHHHcCCcEEEEEcCcccCCchhHHHHHhCCCEEEECCCCCEeeeeccCCCccccCCCCHHHHHHHHHHH
Confidence 45666888999999999999987 111 111 1456677777776655
Q ss_pred HHhhcCCCCCCcCCCCCccCeEeeecCCC
Q 035598 126 WNNFLGGHSSSRPLGPAVLDGIDLDIEGG 154 (298)
Q Consensus 126 ~~~f~~g~s~~~~~~~~~~DGiDiD~E~p 154 (298)
. .+.+.|+||+=+|.-.|
T Consensus 148 ~-----------~~~~~Gvdg~w~D~~Ep 165 (317)
T cd06598 148 K-----------KLIDQGVTGWWGDLGEP 165 (317)
T ss_pred H-----------HhhhCCccEEEecCCCc
Confidence 2 34678999999998544
No 70
>cd02801 DUS_like_FMN Dihydrouridine synthase-like (DUS-like) FMN-binding domain. Members of this family catalyze the reduction of the 5,6-double bond of a uridine residue on tRNA. Dihydrouridine modification of tRNA is widely observed in prokaryotes and eukaryotes, and also in some archaea. Most dihydrouridines are found in the D loop of t-RNAs. The role of dihydrouridine in tRNA is currently unknown, but may increase conformational flexibility of the tRNA. It is likely that different family members have different substrate specificities, which may overlap. 1VHN, a putative flavin oxidoreductase, has high sequence similarity to DUS. The enzymatic mechanism of 1VHN is not known at the present.
Probab=60.49 E-value=14 Score=32.27 Aligned_cols=56 Identities=20% Similarity=0.303 Sum_probs=37.4
Q ss_pred HhCCCeEEEEEeCCCCCCCCCCHHHHHHHHHHHHHhhcCCCCCCcCCCCCccCeEeeecCCCCc---------------h
Q 035598 93 QAKGVKVLLSLGGAAGSYSLTSTQDAKQVATYLWNNFLGGHSSSRPLGPAVLDGIDLDIEGGTS---------------Q 157 (298)
Q Consensus 93 q~~g~KVllSiGG~~~~~~~~~~~~~~~fa~~v~~~f~~g~s~~~~~~~~~~DGiDiD~E~p~~---------------~ 157 (298)
...+.++.++|+|.. .+.|++.. +.+.+.|+|||||+.=+|.. .
T Consensus 51 ~~~~~p~~~qi~g~~----------~~~~~~aa-----------~~~~~aG~d~ieln~g~p~~~~~~~~~G~~l~~~~~ 109 (231)
T cd02801 51 NPEERPLIVQLGGSD----------PETLAEAA-----------KIVEELGADGIDLNMGCPSPKVTKGGAGAALLKDPE 109 (231)
T ss_pred CccCCCEEEEEcCCC----------HHHHHHHH-----------HHHHhcCCCEEEEeCCCCHHHHhCCCeeehhcCCHH
Confidence 456899999999852 23455443 23457899999999766531 2
Q ss_pred hHHHHHHHHHhh
Q 035598 158 HWDELARFLAGY 169 (298)
Q Consensus 158 ~~~~li~~LR~~ 169 (298)
-..++++++|+.
T Consensus 110 ~~~eii~~v~~~ 121 (231)
T cd02801 110 LVAEIVRAVREA 121 (231)
T ss_pred HHHHHHHHHHHh
Confidence 245677777776
No 71
>PRK10550 tRNA-dihydrouridine synthase C; Provisional
Probab=60.44 E-value=32 Score=32.28 Aligned_cols=88 Identities=15% Similarity=0.023 Sum_probs=51.3
Q ss_pred CCeEEEEEeCCCCCCCCCCHHHHHHHHHHHHHhhcCCCCCCcCCCCCccCeEeeecCCCCc---------------hhHH
Q 035598 96 GVKVLLSLGGAAGSYSLTSTQDAKQVATYLWNNFLGGHSSSRPLGPAVLDGIDLDIEGGTS---------------QHWD 160 (298)
Q Consensus 96 g~KVllSiGG~~~~~~~~~~~~~~~fa~~v~~~f~~g~s~~~~~~~~~~DGiDiD~E~p~~---------------~~~~ 160 (298)
+..+.+.|+|.. .+.|+.... .+.+.|+|+|||+.=.|.+ .-..
T Consensus 62 e~p~~vQl~g~~----------p~~~~~aA~-----------~~~~~g~d~IdiN~GCP~~~v~~~g~Gs~Ll~~~~~~~ 120 (312)
T PRK10550 62 GTLVRIQLLGQY----------PQWLAENAA-----------RAVELGSWGVDLNCGCPSKTVNGSGGGATLLKDPELIY 120 (312)
T ss_pred CCcEEEEeccCC----------HHHHHHHHH-----------HHHHcCCCEEEEeCCCCchHHhcCCCchHhhcCHHHHH
Confidence 578999999842 334555432 2456799999999999852 1234
Q ss_pred HHHHHHHhhhhCCCceEEEEcCCCCCCc--chh--hhhhhcCCCceEEee
Q 035598 161 ELARFLAGYSQKGKKVYVTAAPQCPFPD--AWI--GNALKTGVFDYVWVQ 206 (298)
Q Consensus 161 ~li~~LR~~~~~g~~~llT~Ap~~~~~~--~~~--~~~l~~~~~D~invq 206 (298)
.+++++|+. .+.++-||+=....+.+ ... -..+....+|+|.|-
T Consensus 121 eiv~avr~~--~~~~~pVsvKiR~g~~~~~~~~~~a~~l~~~Gvd~i~Vh 168 (312)
T PRK10550 121 QGAKAMREA--VPAHLPVTVKVRLGWDSGERKFEIADAVQQAGATELVVH 168 (312)
T ss_pred HHHHHHHHh--cCCCcceEEEEECCCCCchHHHHHHHHHHhcCCCEEEEC
Confidence 566666765 33344566543222221 111 123334569999984
No 72
>cd04747 OYE_like_5_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 5. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=59.92 E-value=57 Score=31.31 Aligned_cols=22 Identities=23% Similarity=0.299 Sum_probs=17.2
Q ss_pred ccchHHHHHHHHhCCCeEEEEE
Q 035598 82 CTGLSSDIKSCQAKGVKVLLSL 103 (298)
Q Consensus 82 ~~~l~~~i~~~q~~g~KVllSi 103 (298)
.+.+.+.+..+|+.|-|+++=|
T Consensus 77 i~~~~~l~d~vh~~Ga~i~~QL 98 (361)
T cd04747 77 LAGWKKVVDEVHAAGGKIAPQL 98 (361)
T ss_pred HHHHHHHHHHHHhcCCEEEEec
Confidence 3456667778999999998887
No 73
>cd04733 OYE_like_2_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 2. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=58.33 E-value=59 Score=30.64 Aligned_cols=22 Identities=14% Similarity=0.166 Sum_probs=17.1
Q ss_pred ccchHHHHHHHHhCCCeEEEEE
Q 035598 82 CTGLSSDIKSCQAKGVKVLLSL 103 (298)
Q Consensus 82 ~~~l~~~i~~~q~~g~KVllSi 103 (298)
.+.+.+....+|+.|-|+++=|
T Consensus 81 i~~~~~l~~~vh~~G~~~~~Ql 102 (338)
T cd04733 81 LEAFREWAAAAKANGALIWAQL 102 (338)
T ss_pred HHHHHHHHHHHHhcCCEEEEEc
Confidence 3556677788999999998765
No 74
>cd06597 GH31_transferase_CtsY CtsY (cyclic tetrasaccharide-synthesizing enzyme Y) is a bacterial 3-alpha-isomaltosyltransferase, first identified in Arthrobacter globiformis, that produces cyclic tetrasaccharides together with a closely related enzyme CtsZ. CtsY and CtsZ both have a glycosyl hydrolase family 31 (GH31) catalytic domain. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein.
Probab=57.79 E-value=23 Score=33.57 Aligned_cols=22 Identities=32% Similarity=0.318 Sum_probs=18.3
Q ss_pred CccchHHHHHHHHhCCCeEEEE
Q 035598 81 GCTGLSSDIKSCQAKGVKVLLS 102 (298)
Q Consensus 81 ~~~~l~~~i~~~q~~g~KVllS 102 (298)
.++...+.|+.+|++|+||++.
T Consensus 83 ~FPdp~~mi~~Lh~~G~kv~l~ 104 (340)
T cd06597 83 RWPNPKGMIDELHEQGVKVLLW 104 (340)
T ss_pred cCCCHHHHHHHHHHCCCEEEEE
Confidence 3567789999999999999863
No 75
>cd06589 GH31 The enzymes of glycosyl hydrolase family 31 (GH31) occur in prokaryotes, eukaryotes, and archaea with a wide range of hydrolytic activities, including alpha-glucosidase (glucoamylase and sucrase-isomaltase), alpha-xylosidase, 6-alpha-glucosyltransferase, 3-alpha-isomaltosyltransferase and alpha-1,4-glucan lyase. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein. In most cases, the pyranose moiety recognized in subsite -1 of the substrate binding site is an alpha-D-glucose, though some GH31 family members show a preference for alpha-D-xylose. Several GH31 enzymes can accommodate both glucose and xylose and different levels of discrimination between the two have been observed. Most characterized GH31 enzymes are alpha-glucosidases. In mammals, GH31 members with alpha-glucosidase activity are implicated in at least three distinct biological processes
Probab=56.53 E-value=32 Score=31.16 Aligned_cols=55 Identities=20% Similarity=0.126 Sum_probs=40.9
Q ss_pred CccchHHHHHHHHhCCCeEEEEEeCCCCCCCCCCHHHHHHHHHHHHHhhcCCCCCCcCCCCCccCeEeeecCCCC
Q 035598 81 GCTGLSSDIKSCQAKGVKVLLSLGGAAGSYSLTSTQDAKQVATYLWNNFLGGHSSSRPLGPAVLDGIDLDIEGGT 155 (298)
Q Consensus 81 ~~~~l~~~i~~~q~~g~KVllSiGG~~~~~~~~~~~~~~~fa~~v~~~f~~g~s~~~~~~~~~~DGiDiD~E~p~ 155 (298)
.++...+.|+.+|++|+||++.+= +.-|+-|.+.+. +++.+.|+||+=+|.-.|.
T Consensus 64 ~Fpdp~~~i~~l~~~g~~~~~~~~----------P~v~~w~~~~~~----------~~~~~~Gvdg~w~D~~E~~ 118 (265)
T cd06589 64 KFPNPKSMIDELHDNGVKLVLWID----------PYIREWWAEVVK----------KLLVSLGVDGFWTDMGEPS 118 (265)
T ss_pred hCCCHHHHHHHHHHCCCEEEEEeC----------hhHHHHHHHHHH----------HhhccCCCCEEeccCCCCC
Confidence 456778999999999999999752 122666666553 4457899999999977664
No 76
>PLN00196 alpha-amylase; Provisional
Probab=56.45 E-value=40 Score=33.12 Aligned_cols=24 Identities=29% Similarity=0.416 Sum_probs=20.6
Q ss_pred CCccchHHHHHHHHhCCCeEEEEE
Q 035598 80 NGCTGLSSDIKSCQAKGVKVLLSL 103 (298)
Q Consensus 80 ~~~~~l~~~i~~~q~~g~KVllSi 103 (298)
++.++|.+.|++||++|+||++=+
T Consensus 89 Gt~~elk~Lv~~aH~~GIkVilDv 112 (428)
T PLN00196 89 GNEAQLKSLIEAFHGKGVQVIADI 112 (428)
T ss_pred CCHHHHHHHHHHHHHCCCEEEEEE
Confidence 456789999999999999998754
No 77
>cd04739 DHOD_like Dihydroorotate dehydrogenase (DHOD) like proteins. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively. This subgroup has the conserved FMN binding site, but lacks some catalytic residues and may therefore be inactive.
Probab=55.95 E-value=44 Score=31.41 Aligned_cols=77 Identities=21% Similarity=0.261 Sum_probs=46.4
Q ss_pred chHHHHHHHHhC-CCeEEEEEeCCCCCCCCCCHHHHHHHHHHHHHhhcCCCCCCcCCCCCccCeEeeecCCCCc------
Q 035598 84 GLSSDIKSCQAK-GVKVLLSLGGAAGSYSLTSTQDAKQVATYLWNNFLGGHSSSRPLGPAVLDGIDLDIEGGTS------ 156 (298)
Q Consensus 84 ~l~~~i~~~q~~-g~KVllSiGG~~~~~~~~~~~~~~~fa~~v~~~f~~g~s~~~~~~~~~~DGiDiD~E~p~~------ 156 (298)
.+.+.++.++++ ++.|++||.|.+ . +.|++.+ +.+++.++|+|+|+.-++..
T Consensus 86 ~~~~~i~~~~~~~~~pvi~si~g~~-------~---~~~~~~a-----------~~~~~~gad~iElN~s~~~~~~~~~g 144 (325)
T cd04739 86 EYLELIRRAKRAVSIPVIASLNGVS-------A---GGWVDYA-----------RQIEEAGADALELNIYALPTDPDISG 144 (325)
T ss_pred HHHHHHHHHHhccCCeEEEEeCCCC-------H---HHHHHHH-----------HHHHhcCCCEEEEeCCCCCCCCCccc
Confidence 445566655433 788999997621 2 2344433 23456789999999976421
Q ss_pred ----hhHHHHHHHHHhhhhCCCceEEEEcCC
Q 035598 157 ----QHWDELARFLAGYSQKGKKVYVTAAPQ 183 (298)
Q Consensus 157 ----~~~~~li~~LR~~~~~g~~~llT~Ap~ 183 (298)
+.+..+++++|+.. ....++-.+|.
T Consensus 145 ~~~~~~~~eiv~~v~~~~--~iPv~vKl~p~ 173 (325)
T cd04739 145 AEVEQRYLDILRAVKSAV--TIPVAVKLSPF 173 (325)
T ss_pred chHHHHHHHHHHHHHhcc--CCCEEEEcCCC
Confidence 23456777777763 23455556654
No 78
>cd02911 arch_FMN Archeal FMN-binding domain. This family of archaeal proteins are part of the NAD(P)H-dependent flavin oxidoreductase (oxidored) FMN-binding family that reduce a range of alternative electron acceptors. Most use FAD/FMN as a cofactor and NAD(P)H as electron donor. Some contain 4Fe-4S cluster to transfer electron from FAD to FMN. The specific function of this group is unknown.
Probab=55.19 E-value=34 Score=30.64 Aligned_cols=96 Identities=11% Similarity=0.121 Sum_probs=53.0
Q ss_pred chHHHHHHHHhCCCeEEEEEeCCCCCCCCCCHHHHHHHHHHHHHhhcCCCCCCcCCCCCccCeEeeecCCCCc-------
Q 035598 84 GLSSDIKSCQAKGVKVLLSLGGAAGSYSLTSTQDAKQVATYLWNNFLGGHSSSRPLGPAVLDGIDLDIEGGTS------- 156 (298)
Q Consensus 84 ~l~~~i~~~q~~g~KVllSiGG~~~~~~~~~~~~~~~fa~~v~~~f~~g~s~~~~~~~~~~DGiDiD~E~p~~------- 156 (298)
.+.+++..++..+..+.++|.|.+ ++ .++.-. +.+.++ .|+|||+...|..
T Consensus 60 ~~~~~~~~~~~~~~p~~vqi~g~~-------~~---~~~~aa-----------~~~~~~-~~~ielN~gCP~~~v~~~g~ 117 (233)
T cd02911 60 FIEGEIKALKDSNVLVGVNVRSSS-------LE---PLLNAA-----------ALVAKN-AAILEINAHCRQPEMVEAGA 117 (233)
T ss_pred HHHHHHHHhhccCCeEEEEecCCC-------HH---HHHHHH-----------HHHhhc-CCEEEEECCCCcHHHhcCCc
Confidence 345667777767889999998842 22 233222 234455 5999999999863
Q ss_pred --------hhHHHHHHHHHhhhhCCCceEEEEcCCCCC-Cc-chhhhhhhcCCCceEEee
Q 035598 157 --------QHWDELARFLAGYSQKGKKVYVTAAPQCPF-PD-AWIGNALKTGVFDYVWVQ 206 (298)
Q Consensus 157 --------~~~~~li~~LR~~~~~g~~~llT~Ap~~~~-~~-~~~~~~l~~~~~D~invq 206 (298)
+....+++++|+. ++-+|+=....+ .+ ..+...+....+|.|++.
T Consensus 118 G~~Ll~~p~~l~eiv~avr~~-----~~pVsvKir~g~~~~~~~la~~l~~aG~d~ihv~ 172 (233)
T cd02911 118 GEALLKDPERLSEFIKALKET-----GVPVSVKIRAGVDVDDEELARLIEKAGADIIHVD 172 (233)
T ss_pred chHHcCCHHHHHHHHHHHHhc-----CCCEEEEEcCCcCcCHHHHHHHHHHhCCCEEEEC
Confidence 1234566666653 223443222112 11 112223334568999884
No 79
>cd06412 GH25_CH-type CH-type (Chalaropsis-type) lysozymes represent one of four functionally-defined classes of peptidoglycan hydrolases (also referred to as endo-N-acetylmuramidases) that cleave bacterial cell wall peptidoglycans. CH-type lysozymes exhibit both lysozyme (acetylmuramidase) and diacetylmuramidase activity. The first member of this family to be described was a muramidase from the fungus Chalaropsis. However, a majority of the CH-type lysozymes are found in bacteriophages and Gram-positive bacteria such as Streptomyces and Clostridium. CH-type lysozymes have a single glycosyl hydrolase family 25 (GH25) domain with an unusual beta/alpha-barrel fold in which the last strand of the barrel is antiparallel to strands beta7 and beta1. Most CH-type lysozymes appear to lack the cell wall-binding domain found in other GH25 muramidases.
Probab=54.03 E-value=29 Score=30.02 Aligned_cols=17 Identities=18% Similarity=0.184 Sum_probs=14.3
Q ss_pred cchHHHHHHHHhCCCeE
Q 035598 83 TGLSSDIKSCQAKGVKV 99 (298)
Q Consensus 83 ~~l~~~i~~~q~~g~KV 99 (298)
+.+.+.++.|++.|++|
T Consensus 39 ~~~~~n~~~A~~aGl~~ 55 (199)
T cd06412 39 PRFSSQYNGAYNAGLIR 55 (199)
T ss_pred hhHHHHHHHHHHcCCce
Confidence 46789999999999866
No 80
>PLN03244 alpha-amylase; Provisional
Probab=52.46 E-value=20 Score=37.93 Aligned_cols=23 Identities=13% Similarity=0.244 Sum_probs=20.1
Q ss_pred CccchHHHHHHHHhCCCeEEEEE
Q 035598 81 GCTGLSSDIKSCQAKGVKVLLSL 103 (298)
Q Consensus 81 ~~~~l~~~i~~~q~~g~KVllSi 103 (298)
+..+|+..|..||++|++|+|=+
T Consensus 439 TPeDLK~LVD~aH~~GI~VILDv 461 (872)
T PLN03244 439 TPDDFKRLVDEAHGLGLLVFLDI 461 (872)
T ss_pred CHHHHHHHHHHHHHCCCEEEEEe
Confidence 45679999999999999999874
No 81
>PF03537 Glyco_hydro_114: Glycoside-hydrolase family GH114; InterPro: IPR004352 Eighty-one archaeal-like genes, ranging in size from 4-20kb, are clustered in 15 regions of the Thermotoga maritima genome []. Conservation of gene order between T. maritima and Archaea in many of these regions suggests that lateral gene transfer may have occurred between thermophilic Eubacteria and Archaea []. One of the T. maritima sequences (hypothetical protein TM1410) shares similarity with Methanocaldococcus jannaschii (Methanococcus jannaschii) hypothetical protein MJ1477 and with hypothetical protein DR0705 from Deinococcus radiodurans. The sequences are characterised by relatively variable N- and C-terminal domains, and a more conserved central domain. They share no similarity with any other known, functionally or structurally characterised proteins. ; PDB: 2AAM_F.
Probab=52.09 E-value=12 Score=27.29 Aligned_cols=22 Identities=36% Similarity=0.622 Sum_probs=17.6
Q ss_pred HHHHHHHHhCCCeEE--EEEeCCC
Q 035598 86 SSDIKSCQAKGVKVL--LSLGGAA 107 (298)
Q Consensus 86 ~~~i~~~q~~g~KVl--lSiGG~~ 107 (298)
.++|+.+|++|+||+ +|+|-+.
T Consensus 39 ~~~I~~L~~~G~~vicY~s~Gs~E 62 (74)
T PF03537_consen 39 KEEIARLKAQGKKVICYFSIGSAE 62 (74)
T ss_dssp HHHHHHHHHTT-EEEEEEESSEEE
T ss_pred HHHHHHHHHCCCEEEEEEeCceec
Confidence 688999999999998 7777664
No 82
>PLN02877 alpha-amylase/limit dextrinase
Probab=51.67 E-value=70 Score=34.85 Aligned_cols=20 Identities=15% Similarity=0.383 Sum_probs=18.0
Q ss_pred chHHHHHHHHhCCCeEEEEE
Q 035598 84 GLSSDIKSCQAKGVKVLLSL 103 (298)
Q Consensus 84 ~l~~~i~~~q~~g~KVllSi 103 (298)
++++.|+.||++|++|++=+
T Consensus 467 efk~mV~~lH~~GI~VImDV 486 (970)
T PLN02877 467 EFRKMVQALNRIGLRVVLDV 486 (970)
T ss_pred HHHHHHHHHHHCCCEEEEEE
Confidence 58899999999999999874
No 83
>COG0036 Rpe Pentose-5-phosphate-3-epimerase [Carbohydrate transport and metabolism]
Probab=51.01 E-value=67 Score=28.72 Aligned_cols=63 Identities=21% Similarity=0.237 Sum_probs=49.3
Q ss_pred CCCccCeEeeecCCCCchhHHHHHHHHHhhhhCCCceEEEEcCCCCCCcchhhhhhhcCCCceEEeeecCCC
Q 035598 140 GPAVLDGIDLDIEGGTSQHWDELARFLAGYSQKGKKVYVTAAPQCPFPDAWIGNALKTGVFDYVWVQFYNNP 211 (298)
Q Consensus 140 ~~~~~DGiDiD~E~p~~~~~~~li~~LR~~~~~g~~~llT~Ap~~~~~~~~~~~~l~~~~~D~invq~Yn~~ 211 (298)
-+.|-|-|-|..| ...+..++++.+|+. |.+.-|+.-|..|. ..+...+ ..+|+|-+|.=|.+
T Consensus 81 a~agad~It~H~E--~~~~~~r~i~~Ik~~---G~kaGv~lnP~Tp~--~~i~~~l--~~vD~VllMsVnPG 143 (220)
T COG0036 81 AKAGADIITFHAE--ATEHIHRTIQLIKEL---GVKAGLVLNPATPL--EALEPVL--DDVDLVLLMSVNPG 143 (220)
T ss_pred HHhCCCEEEEEec--cCcCHHHHHHHHHHc---CCeEEEEECCCCCH--HHHHHHH--hhCCEEEEEeECCC
Confidence 3678999999999 456788999999997 66667888888763 2344444 78999999999875
No 84
>PRK11815 tRNA-dihydrouridine synthase A; Provisional
Probab=50.92 E-value=21 Score=33.75 Aligned_cols=55 Identities=16% Similarity=0.188 Sum_probs=37.3
Q ss_pred hCCCeEEEEEeCCCCCCCCCCHHHHHHHHHHHHHhhcCCCCCCcCCCCCccCeEeeecCCCCc---------------hh
Q 035598 94 AKGVKVLLSLGGAAGSYSLTSTQDAKQVATYLWNNFLGGHSSSRPLGPAVLDGIDLDIEGGTS---------------QH 158 (298)
Q Consensus 94 ~~g~KVllSiGG~~~~~~~~~~~~~~~fa~~v~~~f~~g~s~~~~~~~~~~DGiDiD~E~p~~---------------~~ 158 (298)
.....+.+.|+|.+ .+.|++.. +.++++|+|||||+.-.|.. .-
T Consensus 62 ~~e~p~~vQl~g~~----------p~~~~~aA-----------~~~~~~g~d~IdlN~gCP~~~v~~~~~Gs~L~~~p~~ 120 (333)
T PRK11815 62 PEEHPVALQLGGSD----------PADLAEAA-----------KLAEDWGYDEINLNVGCPSDRVQNGRFGACLMAEPEL 120 (333)
T ss_pred CCCCcEEEEEeCCC----------HHHHHHHH-----------HHHHhcCCCEEEEcCCCCHHHccCCCeeeHHhcCHHH
Confidence 34678999999943 23455544 34567899999999988852 12
Q ss_pred HHHHHHHHHhh
Q 035598 159 WDELARFLAGY 169 (298)
Q Consensus 159 ~~~li~~LR~~ 169 (298)
...+++++|+.
T Consensus 121 ~~eiv~avr~~ 131 (333)
T PRK11815 121 VADCVKAMKDA 131 (333)
T ss_pred HHHHHHHHHHH
Confidence 34567777765
No 85
>cd04735 OYE_like_4_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 4. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=50.70 E-value=87 Score=29.75 Aligned_cols=22 Identities=27% Similarity=0.483 Sum_probs=17.7
Q ss_pred ccchHHHHHHHHhCCCeEEEEE
Q 035598 82 CTGLSSDIKSCQAKGVKVLLSL 103 (298)
Q Consensus 82 ~~~l~~~i~~~q~~g~KVllSi 103 (298)
.+.+.+.+..+|+.|-|+++=|
T Consensus 77 i~~~~~l~~~vh~~G~~i~~QL 98 (353)
T cd04735 77 IPGLRKLAQAIKSKGAKAILQI 98 (353)
T ss_pred hHHHHHHHHHHHhCCCeEEEEe
Confidence 4567777788999999998776
No 86
>PRK07565 dihydroorotate dehydrogenase 2; Reviewed
Probab=50.64 E-value=1.6e+02 Score=27.59 Aligned_cols=99 Identities=18% Similarity=0.171 Sum_probs=55.1
Q ss_pred cchHHHHHHHHh-CCCeEEEEEeCCCCCCCCCCHHHHHHHHHHHHHhhcCCCCCCcCCCCCccCeEeeecCCCCc-----
Q 035598 83 TGLSSDIKSCQA-KGVKVLLSLGGAAGSYSLTSTQDAKQVATYLWNNFLGGHSSSRPLGPAVLDGIDLDIEGGTS----- 156 (298)
Q Consensus 83 ~~l~~~i~~~q~-~g~KVllSiGG~~~~~~~~~~~~~~~fa~~v~~~f~~g~s~~~~~~~~~~DGiDiD~E~p~~----- 156 (298)
..+.+.++.+++ .++.|++||+|.+ .++-...+. .+++.++|+|+|++-+|..
T Consensus 87 d~~~~~i~~~~~~~~~pvi~sI~g~~-------~~e~~~~a~--------------~~~~agad~ielN~scpp~~~~~~ 145 (334)
T PRK07565 87 EEYLELIRRAKEAVDIPVIASLNGSS-------AGGWVDYAR--------------QIEQAGADALELNIYYLPTDPDIS 145 (334)
T ss_pred HHHHHHHHHHHHhcCCcEEEEeccCC-------HHHHHHHHH--------------HHHHcCCCEEEEeCCCCCCCCCCc
Confidence 344566665543 3689999998832 222223333 2456789999999866431
Q ss_pred -----hhHHHHHHHHHhhhhCCCceEEEEcCCCCCCc-chhhhhhhcCCCceEEee
Q 035598 157 -----QHWDELARFLAGYSQKGKKVYVTAAPQCPFPD-AWIGNALKTGVFDYVWVQ 206 (298)
Q Consensus 157 -----~~~~~li~~LR~~~~~g~~~llT~Ap~~~~~~-~~~~~~l~~~~~D~invq 206 (298)
+.+.++++++|+.. ....++-..|.. .+ ..+...+....+|.|.+.
T Consensus 146 g~~~~~~~~eil~~v~~~~--~iPV~vKl~p~~--~~~~~~a~~l~~~G~dgI~~~ 197 (334)
T PRK07565 146 GAEVEQRYLDILRAVKSAV--SIPVAVKLSPYF--SNLANMAKRLDAAGADGLVLF 197 (334)
T ss_pred cccHHHHHHHHHHHHHhcc--CCcEEEEeCCCc--hhHHHHHHHHHHcCCCeEEEE
Confidence 23567778888763 233455555532 11 112223334557777664
No 87
>PF05984 Cytomega_UL20A: Cytomegalovirus UL20A protein; InterPro: IPR009245 This family consists of several Cytomegalovirus UL20A proteins. UL20A is thought to be a glycoprotein [].
Probab=50.16 E-value=17 Score=27.40 Aligned_cols=24 Identities=33% Similarity=0.207 Sum_probs=18.0
Q ss_pred CCccchhHHHHHHHHHHHHhccCC
Q 035598 1 MAFRTAISLSFISSLLLMLATGSN 24 (298)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~ 24 (298)
||+|.+|..++++.+..++|+-+.
T Consensus 1 MaRRlwiLslLAVtLtVALAAPsQ 24 (100)
T PF05984_consen 1 MARRLWILSLLAVTLTVALAAPSQ 24 (100)
T ss_pred CchhhHHHHHHHHHHHHHhhcccc
Confidence 899999888888776666665433
No 88
>cd06415 GH25_Cpl1-like Cpl-1 lysin (also known as Cpl-9 lysozyme / muramidase) is a bacterial cell wall endolysin encoded by the pneumococcal bacteriophage Cp-1, which cleaves the glycosidic N-acetylmuramoyl-(beta1,4)-N-acetylglucosamine bonds of the pneumococcal glycan chain, thus acting as an enzymatic antimicrobial agent (an enzybiotic) against streptococcal infections. Cpl-1 belongs to the CP family of lysozymes (CPL lysozymes) which includes the Cpl-7 lysin. Cpl-1 has a glycosyl hydrolase family 25 (GH25) catalytic domain with an irregular (beta/alpha)5-beta3 barrel and a C-terminal cell wall-anchoring module formed by six similar choline-binding repeats (ChBr's). The ChBr's facilitate the anchoring of Cpl-1 to the choline-containing teichoic acid of the pneumococcal cell wall. Other members of this domain family have an N-terminal CHAP (cysteine, histidine-dependent amidohydrolases/peptidases) domain similar to that of the firmicute CHAP lysins and associated with endopeptidase
Probab=49.62 E-value=67 Score=27.66 Aligned_cols=17 Identities=24% Similarity=0.251 Sum_probs=14.6
Q ss_pred cchHHHHHHHHhCCCeE
Q 035598 83 TGLSSDIKSCQAKGVKV 99 (298)
Q Consensus 83 ~~l~~~i~~~q~~g~KV 99 (298)
+.+.+.++.|++.|++|
T Consensus 38 ~~~~~n~~~A~~aGl~v 54 (196)
T cd06415 38 PKASAQVSSAIANGKMT 54 (196)
T ss_pred ccHHHHHHHHHHCCCee
Confidence 46789999999999877
No 89
>cd06595 GH31_xylosidase_XylS-like This family represents an uncharacterized glycosyl hydrolase family 31 (GH31) enzyme found in bacteria and eukaryotes that is related to the XylS xylosidase of Sulfolobus solfataricus. Alpha-xylosidases catalyze the release of an alpha-xylose residue from the non-reducing end of alpha-xyloside substrates. Enzymes of the GH31 family possess a wide range of different hydrolytic activities including alpha-glucosidase (glucoamylase and sucrase-isomaltase), alpha-xylosidase, 6-alpha-glucosyltransferase, 3-alpha-isomaltosyltransferase and alpha-1,4-glucan lyase. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein.
Probab=49.54 E-value=44 Score=30.84 Aligned_cols=23 Identities=22% Similarity=0.270 Sum_probs=19.7
Q ss_pred CccchHHHHHHHHhCCCeEEEEE
Q 035598 81 GCTGLSSDIKSCQAKGVKVLLSL 103 (298)
Q Consensus 81 ~~~~l~~~i~~~q~~g~KVllSi 103 (298)
.++...+.|+.+|++|+||++.+
T Consensus 72 ~FPdp~~mi~~Lh~~G~k~v~~v 94 (292)
T cd06595 72 LFPDPEKLLQDLHDRGLKVTLNL 94 (292)
T ss_pred cCCCHHHHHHHHHHCCCEEEEEe
Confidence 45667889999999999999987
No 90
>COG1891 Uncharacterized protein conserved in archaea [Function unknown]
Probab=49.39 E-value=1.2e+02 Score=26.48 Aligned_cols=58 Identities=21% Similarity=0.319 Sum_probs=39.5
Q ss_pred ecCCCC----chhHHHHHHHHHhhhhCCCceEEEEcCCC-CC-Ccc-h---hhhhhhcCCCceEEeeecCCC
Q 035598 150 DIEGGT----SQHWDELARFLAGYSQKGKKVYVTAAPQC-PF-PDA-W---IGNALKTGVFDYVWVQFYNNP 211 (298)
Q Consensus 150 D~E~p~----~~~~~~li~~LR~~~~~g~~~llT~Ap~~-~~-~~~-~---~~~~l~~~~~D~invq~Yn~~ 211 (298)
|...|. ..||...|+++|+. ..++..+|+...- || |.. . ++.+ ....|||-|-.|+..
T Consensus 25 DVKNP~EGSLGANFPWvIr~i~Ev--~p~d~~vSAT~GDvpYKPGT~slAalGaa--v~GaDYiKVGLYg~k 92 (235)
T COG1891 25 DVKNPAEGSLGANFPWVIREIREV--VPEDQEVSATVGDVPYKPGTASLAALGAA--VAGADYIKVGLYGTK 92 (235)
T ss_pred eccCcccCcccCCChHHHHHHHHh--CccceeeeeeecCCCCCCchHHHHHHHhH--hhCCceEEEeecccc
Confidence 466664 37999999999998 4566789888653 33 211 1 1222 367899999999654
No 91
>cd04738 DHOD_2_like Dihydroorotate dehydrogenase (DHOD) class 2. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences, their cellular location and their natural electron acceptor used to reoxidize the flavin group. Members of class 1 are cytosolic enzymes and multimers, while class 2 enzymes are membrane associated, monomeric and use respiratory quinones as their physiological electron acceptors.
Probab=48.82 E-value=51 Score=30.97 Aligned_cols=107 Identities=15% Similarity=0.188 Sum_probs=57.2
Q ss_pred hHHHHHHHHhCCCeEEEEEeCCCCCCCCCCHHHHHHHHHHHHHhhcCCCCCCcCCCCCccCeEeeecCCCCc--------
Q 035598 85 LSSDIKSCQAKGVKVLLSLGGAAGSYSLTSTQDAKQVATYLWNNFLGGHSSSRPLGPAVLDGIDLDIEGGTS-------- 156 (298)
Q Consensus 85 l~~~i~~~q~~g~KVllSiGG~~~~~~~~~~~~~~~fa~~v~~~f~~g~s~~~~~~~~~~DGiDiD~E~p~~-------- 156 (298)
+.+.++..+..++.+++||+|...+ .. .+..+.|++-+- -+..+ .|+|+|++-.|..
T Consensus 117 ~~~~l~~~~~~~~plivsi~g~~~~-~~--~~~~~d~~~~~~-----------~~~~~-ad~ielN~scP~~~g~~~~~~ 181 (327)
T cd04738 117 VAKRLKKRRPRGGPLGVNIGKNKDT-PL--EDAVEDYVIGVR-----------KLGPY-ADYLVVNVSSPNTPGLRDLQG 181 (327)
T ss_pred HHHHHHHhccCCCeEEEEEeCCCCC-cc--cccHHHHHHHHH-----------HHHhh-CCEEEEECCCCCCCccccccC
Confidence 3455554433478899999986522 11 122344554431 12232 8999999988753
Q ss_pred -hhHHHHHHHHHhhhh-CC--CceEEEEcCCCCCCc-chhhhhhhcCCCceEEee
Q 035598 157 -QHWDELARFLAGYSQ-KG--KKVYVTAAPQCPFPD-AWIGNALKTGVFDYVWVQ 206 (298)
Q Consensus 157 -~~~~~li~~LR~~~~-~g--~~~llT~Ap~~~~~~-~~~~~~l~~~~~D~invq 206 (298)
+...++++++|+... .+ ....+=+.|.....+ ..+.+.+....+|+|.+.
T Consensus 182 ~~~~~~iv~av~~~~~~~~~~~Pv~vKl~~~~~~~~~~~ia~~l~~aGad~I~~~ 236 (327)
T cd04738 182 KEALRELLTAVKEERNKLGKKVPLLVKIAPDLSDEELEDIADVALEHGVDGIIAT 236 (327)
T ss_pred HHHHHHHHHHHHHHHhhcccCCCeEEEeCCCCCHHHHHHHHHHHHHcCCcEEEEE
Confidence 356678888888642 11 234444544321001 011122334568888764
No 92
>PF00150 Cellulase: Cellulase (glycosyl hydrolase family 5); InterPro: IPR001547 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 5 GH5 from CAZY comprises enzymes with several known activities; endoglucanase (3.2.1.4 from EC); beta-mannanase (3.2.1.78 from EC); exo-1,3-glucanase (3.2.1.58 from EC); endo-1,6-glucanase (3.2.1.75 from EC); xylanase (3.2.1.8 from EC); endoglycoceramidase (3.2.1.123 from EC). The microbial degradation of cellulose and xylans requires several types of enzymes. Fungi and bacteria produces a spectrum of cellulolytic enzymes (cellulases) and xylanases which, on the basis of sequence similarities, can be classified into families. One of these families is known as the cellulase family A [] or as the glycosyl hydrolases family 5 []. One of the conserved regions in this family contains a conserved glutamic acid residue which is potentially involved [] in the catalytic mechanism.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3NDY_A 3NDZ_B 1LF1_A 1TVP_B 1TVN_A 3AYR_A 3AYS_A 1QI0_A 1W3K_A 1OCQ_A ....
Probab=48.10 E-value=86 Score=27.74 Aligned_cols=185 Identities=16% Similarity=0.143 Sum_probs=88.5
Q ss_pred ccchHHHHHHHHhCCCeEEEEEeC---CC-CCCCCCCHH-HHH---HHHHHHHHhhcCCCCCCcCCCCCccCeEeeecCC
Q 035598 82 CTGLSSDIKSCQAKGVKVLLSLGG---AA-GSYSLTSTQ-DAK---QVATYLWNNFLGGHSSSRPLGPAVLDGIDLDIEG 153 (298)
Q Consensus 82 ~~~l~~~i~~~q~~g~KVllSiGG---~~-~~~~~~~~~-~~~---~fa~~v~~~f~~g~s~~~~~~~~~~DGiDiD~E~ 153 (298)
...+.+.|+.|+++|++|+|.+=. |. +........ ..+ .+...+...| -++..+-|+||=-|-
T Consensus 61 ~~~ld~~v~~a~~~gi~vild~h~~~~w~~~~~~~~~~~~~~~~~~~~~~~la~~y---------~~~~~v~~~el~NEP 131 (281)
T PF00150_consen 61 LARLDRIVDAAQAYGIYVILDLHNAPGWANGGDGYGNNDTAQAWFKSFWRALAKRY---------KDNPPVVGWELWNEP 131 (281)
T ss_dssp HHHHHHHHHHHHHTT-EEEEEEEESTTCSSSTSTTTTHHHHHHHHHHHHHHHHHHH---------TTTTTTEEEESSSSG
T ss_pred HHHHHHHHHHHHhCCCeEEEEeccCccccccccccccchhhHHHHHhhhhhhcccc---------CCCCcEEEEEecCCc
Confidence 356778899999999999999965 42 222222222 222 2333444322 234456677774442
Q ss_pred CC-----------c----hhHHHHHHHHHhhhhCCCceEEEEcCCCCCCcchh-hhhh--hcCCCceEEeeecCCCCC--
Q 035598 154 GT-----------S----QHWDELARFLAGYSQKGKKVYVTAAPQCPFPDAWI-GNAL--KTGVFDYVWVQFYNNPPC-- 213 (298)
Q Consensus 154 p~-----------~----~~~~~li~~LR~~~~~g~~~llT~Ap~~~~~~~~~-~~~l--~~~~~D~invq~Yn~~~~-- 213 (298)
.. . .-+.++++++|+. +++-+|.+-...-..+... .... .....+.+.+.+|.....
T Consensus 132 ~~~~~~~~w~~~~~~~~~~~~~~~~~~Ir~~---~~~~~i~~~~~~~~~~~~~~~~~~P~~~~~~~~~~~H~Y~~~~~~~ 208 (281)
T PF00150_consen 132 NGGNDDANWNAQNPADWQDWYQRAIDAIRAA---DPNHLIIVGGGGWGADPDGAAADNPNDADNNDVYSFHFYDPYDFSD 208 (281)
T ss_dssp CSTTSTTTTSHHHTHHHHHHHHHHHHHHHHT---TSSSEEEEEEHHHHTBHHHHHHHSTTTTTTSEEEEEEEETTTCHHT
T ss_pred cccCCccccccccchhhhhHHHHHHHHHHhc---CCcceeecCCCccccccchhhhcCcccccCceeEEeeEeCCCCcCC
Confidence 11 1 2345667777775 4444554433210011111 0001 125678999999985421
Q ss_pred CCCCCC---hhhHHHHH---HHHhcCCCCCeEEEeeecCCCCCCCCCcChHHHHHHHHHhhhcCCCCceEEEEeccc
Q 035598 214 QYSSGN---IGNLLNAW---KQWTSDIPANKIFLGLPASPAAAGSGFIPTADLISKVLPAIKGSAKYGGVMLWSKYY 284 (298)
Q Consensus 214 ~~~~~~---~~~~~~~~---~~~~~g~p~~KlvlG~p~~~~~a~~gy~~~~~l~~~~~~~~~~~~~~gGvm~W~~~~ 284 (298)
...... .......+ ..+.... ...+++|==+.+... +. ...+....+++.++++ . -|.+.|+...
T Consensus 209 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-g~pv~~gE~G~~~~~--~~-~~~~~~~~~~~~~~~~-~-~g~~~W~~~~ 279 (281)
T PF00150_consen 209 QWNPGNWGDASALESSFRAALNWAKKN-GKPVVVGEFGWSNND--GN-GSTDYADAWLDYLEQN-G-IGWIYWSWKP 279 (281)
T ss_dssp TTSTCSHHHHHHHHHHHHHHHHHHHHT-TSEEEEEEEESSTTT--SC-HHHHHHHHHHHHHHHT-T-CEEEECEESS
T ss_pred ccccccchhhhHHHHHHHHHHHHHHHc-CCeEEEeCcCCcCCC--CC-cCHHHHHHHHHHHHHC-C-CeEEEEecCC
Confidence 111011 11111222 2222211 126888766654221 22 2223223445666655 4 4777798764
No 93
>TIGR00742 yjbN tRNA dihydrouridine synthase A. Members of this family show a distant relationship to alpha/beta (TIM) barrel enzymes such as dihydroorotate dehydrogenase and glycolate oxidase.
Probab=48.08 E-value=25 Score=33.10 Aligned_cols=56 Identities=16% Similarity=0.211 Sum_probs=37.9
Q ss_pred hCCCeEEEEEeCCCCCCCCCCHHHHHHHHHHHHHhhcCCCCCCcCCCCCccCeEeeecCCCCc---------------hh
Q 035598 94 AKGVKVLLSLGGAAGSYSLTSTQDAKQVATYLWNNFLGGHSSSRPLGPAVLDGIDLDIEGGTS---------------QH 158 (298)
Q Consensus 94 ~~g~KVllSiGG~~~~~~~~~~~~~~~fa~~v~~~f~~g~s~~~~~~~~~~DGiDiD~E~p~~---------------~~ 158 (298)
.....+.+.|+|.. .+.|+... +.+.++++|+|||+.=.|.. +-
T Consensus 52 ~~e~p~~vQl~g~~----------p~~~~~aA-----------~~~~~~g~d~IDlN~GCP~~~v~~~g~Gs~Ll~~p~~ 110 (318)
T TIGR00742 52 PEESPVALQLGGSD----------PNDLAKCA-----------KIAEKRGYDEINLNVGCPSDRVQNGNFGACLMGNADL 110 (318)
T ss_pred CCCCcEEEEEccCC----------HHHHHHHH-----------HHHHhCCCCEEEEECCCCHHHhCCCCeehHhhcCHHH
Confidence 34678889999843 23455543 34567899999999998852 22
Q ss_pred HHHHHHHHHhhh
Q 035598 159 WDELARFLAGYS 170 (298)
Q Consensus 159 ~~~li~~LR~~~ 170 (298)
...+++++|+..
T Consensus 111 ~~~iv~av~~~~ 122 (318)
T TIGR00742 111 VADCVKAMQEAV 122 (318)
T ss_pred HHHHHHHHHHHh
Confidence 456777777753
No 94
>PF01120 Alpha_L_fucos: Alpha-L-fucosidase; InterPro: IPR000933 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Family 29 (GH29 from CAZY) encompasses alpha-L-fucosidases (3.2.1.51 from EC) [], which is a lysosomal enzyme responsible for hydrolyzing the alpha-1,6-linked fucose joined to the reducing-end N-acetylglucosamine of the carbohydrate moieties of glycoproteins. Alpha-L-fucosidase is responsible for hydrolysing the alpha-1,6-linked fucose joined to the reducing-end N-acetylglucosamine of the carbohydrate moieties of glycoproteins. Fucosylated glycoconjugates are involved in numerous biological events, making alpha-l-fucosidases, the enzymes responsible for their processing, critically important. Deficiency in alpha-l-fucosidase activity is associated with fucosidosis, a lysosomal storage disorder characterised by rapid neurodegeneration, resulting in severe mental and motor deterioration []. The enzyme is a hexamer and displays a two-domain fold, composed of a catalytic (beta/alpha)(8)-like domain and a C-terminal beta-sandwich domain []. Drosophila melanogaster spermatozoa contains an alpha-l-fucosidase that might be involved in fertilisation by interacting with alpha-l-fucose residues on the micropyle of the eggshell []. In human sperm, membrane-associated alpha-l-fucosidase is stable for extended periods of time, which is made possible by membrane domains and compartmentalisation. These help preserve protein integrity []. ; GO: 0004560 alpha-L-fucosidase activity, 0005975 carbohydrate metabolic process; PDB: 3EYP_B 2ZX6_A 2ZWY_B 2ZX8_B 2WSP_A 2ZXA_A 2ZWZ_B 1ODU_B 1HL9_A 2ZX5_B ....
Probab=47.57 E-value=95 Score=29.43 Aligned_cols=88 Identities=13% Similarity=0.005 Sum_probs=53.0
Q ss_pred cchHHHHHHHHhCCCeEEEEEeCCCCCC---CCCCH----------HHHHHHHH-HHHHhhcCCCCCCcCCCCCccCeEe
Q 035598 83 TGLSSDIKSCQAKGVKVLLSLGGAAGSY---SLTST----------QDAKQVAT-YLWNNFLGGHSSSRPLGPAVLDGID 148 (298)
Q Consensus 83 ~~l~~~i~~~q~~g~KVllSiGG~~~~~---~~~~~----------~~~~~fa~-~v~~~f~~g~s~~~~~~~~~~DGiD 148 (298)
.-+.+..++||++|+|+-+-+..+.... ..... ....++.+ .+.+ .+.+++.+|.+|.+=
T Consensus 138 Div~El~~A~rk~Glk~G~Y~S~~dw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------ql~EL~~~Y~~d~lW 211 (346)
T PF01120_consen 138 DIVGELADACRKYGLKFGLYYSPWDWHHPDYPPDEEGDENGPADGPGNWQRYYNEYWLA------QLRELLTRYKPDILW 211 (346)
T ss_dssp -HHHHHHHHHHHTT-EEEEEEESSSCCCTTTTSSCHCHHCC--HCCHHHHHHHHHHHHH------HHHHHHHCSTESEEE
T ss_pred CHHHHHHHHHHHcCCeEEEEecchHhcCcccCCCccCCcccccccchhhHhHhhhhhHH------HHHHHHhCCCcceEE
Confidence 3457788899999999999888764221 11111 11223333 2221 124778899999999
Q ss_pred eecCCCCc---hhHHHHHHHHHhhhhCCCceEEE
Q 035598 149 LDIEGGTS---QHWDELARFLAGYSQKGKKVYVT 179 (298)
Q Consensus 149 iD~E~p~~---~~~~~li~~LR~~~~~g~~~llT 179 (298)
+|.-.+.. ..+..+.+.+|+. .++.+|.
T Consensus 212 fDg~~~~~~~~~~~~~~~~~i~~~---qp~~ii~ 242 (346)
T PF01120_consen 212 FDGGWPDPDEDWDSAELYNWIRKL---QPDVIIN 242 (346)
T ss_dssp EESTTSCCCTHHHHHHHHHHHHHH---STTSEEE
T ss_pred ecCCCCccccccCHHHHHHHHHHh---CCeEEEe
Confidence 99776632 3456777788876 2444444
No 95
>cd02929 TMADH_HD_FMN Trimethylamine dehydrogenase (TMADH) and histamine dehydrogenase (HD) FMN-binding domain. TMADH is an iron-sulfur flavoprotein that catalyzes the oxidative demethylation of trimethylamine to form dimethylamine and formaldehyde. The protein forms a symetrical dimer with each subunit containing one 4Fe-4S cluster and one FMN cofactor. It contains a unique flavin, in the form of a 6-S-cysteinyl FMN which is bent by ~25 degrees along the N5-N10 axis of the flavin isoalloxazine ring. This modification of the conformation of the flavin is thought to facilitate catalysis.The closely related histamine dehydrogenase catalyzes oxidative deamination of histamine.
Probab=47.25 E-value=1.2e+02 Score=29.08 Aligned_cols=22 Identities=14% Similarity=0.184 Sum_probs=17.5
Q ss_pred ccchHHHHHHHHhCCCeEEEEE
Q 035598 82 CTGLSSDIKSCQAKGVKVLLSL 103 (298)
Q Consensus 82 ~~~l~~~i~~~q~~g~KVllSi 103 (298)
.+.+.+.+..+|+.|.|+++=|
T Consensus 82 i~~~~~l~~~vh~~G~~i~~QL 103 (370)
T cd02929 82 IRNLAAMTDAVHKHGALAGIEL 103 (370)
T ss_pred HHHHHHHHHHHHHCCCeEEEec
Confidence 4566777788999999998776
No 96
>TIGR00737 nifR3_yhdG putative TIM-barrel protein, nifR3 family. Members of this family show a distant relationship to alpha/beta (TIM) barrel enzymes such as dihydroorotate dehydrogenase and glycolate oxidase.
Probab=46.35 E-value=35 Score=31.85 Aligned_cols=41 Identities=15% Similarity=0.097 Sum_probs=29.0
Q ss_pred hCCCeEEEEEeCCCCCCCCCCHHHHHHHHHHHHHhhcCCCCCCcCCCCCccCeEeeecCCCC
Q 035598 94 AKGVKVLLSLGGAAGSYSLTSTQDAKQVATYLWNNFLGGHSSSRPLGPAVLDGIDLDIEGGT 155 (298)
Q Consensus 94 ~~g~KVllSiGG~~~~~~~~~~~~~~~fa~~v~~~f~~g~s~~~~~~~~~~DGiDiD~E~p~ 155 (298)
..+..+.++|+|.+ .+.|++.. +.++++|+|||||+.-.|.
T Consensus 60 ~~~~p~i~ql~g~~----------~~~~~~aa-----------~~~~~~G~d~IelN~gcP~ 100 (319)
T TIGR00737 60 EDETPISVQLFGSD----------PDTMAEAA-----------KINEELGADIIDINMGCPV 100 (319)
T ss_pred CccceEEEEEeCCC----------HHHHHHHH-----------HHHHhCCCCEEEEECCCCH
Confidence 34778889999943 23455443 2356789999999988774
No 97
>TIGR01037 pyrD_sub1_fam dihydroorotate dehydrogenase (subfamily 1) family protein. This family includes subfamily 1 dihydroorotate dehydrogenases while excluding the closely related subfamily 2 (TIGR01036). This family also includes a number of uncharacterized proteins and a domain of dihydropyrimidine dehydrogenase. The uncharacterized proteins might all be dihydroorotate dehydrogenase.
Probab=46.14 E-value=1.6e+02 Score=27.09 Aligned_cols=96 Identities=16% Similarity=0.195 Sum_probs=51.4
Q ss_pred HHHHHH-HHhCCCeEEEEEeCCCCCCCCCCHHHHHHHHHHHHHhhcCCCCCCcCCCCC--ccCeEeeecCCCCc------
Q 035598 86 SSDIKS-CQAKGVKVLLSLGGAAGSYSLTSTQDAKQVATYLWNNFLGGHSSSRPLGPA--VLDGIDLDIEGGTS------ 156 (298)
Q Consensus 86 ~~~i~~-~q~~g~KVllSiGG~~~~~~~~~~~~~~~fa~~v~~~f~~g~s~~~~~~~~--~~DGiDiD~E~p~~------ 156 (298)
.+.++. .+..+..++++|.|.+ +++-...++. +.+. +.|+|||+.-.|..
T Consensus 79 ~~~~~~~~~~~~~pl~~qi~g~~-------~~~~~~~a~~--------------~~~~~~~~d~ielN~~cP~~~~~g~~ 137 (300)
T TIGR01037 79 LEELKPVREEFPTPLIASVYGSS-------VEEFAEVAEK--------------LEKAPPYVDAYELNLSCPHVKGGGIA 137 (300)
T ss_pred HHHHHHHhccCCCcEEEEeecCC-------HHHHHHHHHH--------------HHhccCccCEEEEECCCCCCCCCccc
Confidence 344443 2344678999998743 2332233332 3333 39999999998863
Q ss_pred -----hhHHHHHHHHHhhhhCCCceEEEEcCCCCCCcc-hhhhhhhcCCCceEEee
Q 035598 157 -----QHWDELARFLAGYSQKGKKVYVTAAPQCPFPDA-WIGNALKTGVFDYVWVQ 206 (298)
Q Consensus 157 -----~~~~~li~~LR~~~~~g~~~llT~Ap~~~~~~~-~~~~~l~~~~~D~invq 206 (298)
+...++++++|+.. +....+=+.|.. .+. .+...+....+|+|.+-
T Consensus 138 l~~~~~~~~eiv~~vr~~~--~~pv~vKi~~~~--~~~~~~a~~l~~~G~d~i~v~ 189 (300)
T TIGR01037 138 IGQDPELSADVVKAVKDKT--DVPVFAKLSPNV--TDITEIAKAAEEAGADGLTLI 189 (300)
T ss_pred cccCHHHHHHHHHHHHHhc--CCCEEEECCCCh--hhHHHHHHHHHHcCCCEEEEE
Confidence 34556788888763 222222233221 111 12223334568999874
No 98
>PF01183 Glyco_hydro_25: Glycosyl hydrolases family 25; InterPro: IPR002053 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 25 GH25 from CAZY comprises enzymes with only one known activity; lysozyme (3.2.1.17 from EC). It has been shown [, ] that a number of cell-wall lytic enzymes are evolutionary related and can be classified into a single family. Two residues, an aspartate and a glutamate, have been shown [] to be important for the catalytic activity of the Charalopsis enzyme. These residues as well as some others in their vicinity are conserved in all proteins from this family.; GO: 0003796 lysozyme activity, 0009253 peptidoglycan catabolic process, 0016998 cell wall macromolecule catabolic process; PDB: 1JFX_A 2WW5_A 2WWD_A 2WWC_A 2X8R_D 2J8F_A 1OBA_A 2IXU_A 2J8G_A 2IXV_A ....
Probab=45.57 E-value=78 Score=26.64 Aligned_cols=17 Identities=35% Similarity=0.511 Sum_probs=15.0
Q ss_pred cchHHHHHHHHhCCCeE
Q 035598 83 TGLSSDIKSCQAKGVKV 99 (298)
Q Consensus 83 ~~l~~~i~~~q~~g~KV 99 (298)
+.+...++.+++.|++|
T Consensus 36 ~~~~~n~~~a~~aGl~~ 52 (181)
T PF01183_consen 36 PYFESNIKNAKAAGLPV 52 (181)
T ss_dssp TTHHHHHHHHHHTTSEE
T ss_pred chHHHHHHHHHHcCCeE
Confidence 46889999999999997
No 99
>PF04476 DUF556: Protein of unknown function (DUF556); InterPro: IPR007565 The proteins in this entry are functionally uncharacterised.
Probab=45.32 E-value=2.3e+02 Score=25.55 Aligned_cols=127 Identities=22% Similarity=0.212 Sum_probs=67.5
Q ss_pred CccCeEeeecCCCC----chhHHHHHHHHHhhhhCCCceEEEEcCCC-CC-Ccchhhhhh--hcCCCceEEeeecCCCCC
Q 035598 142 AVLDGIDLDIEGGT----SQHWDELARFLAGYSQKGKKVYVTAAPQC-PF-PDAWIGNAL--KTGVFDYVWVQFYNNPPC 213 (298)
Q Consensus 142 ~~~DGiDiD~E~p~----~~~~~~li~~LR~~~~~g~~~llT~Ap~~-~~-~~~~~~~~l--~~~~~D~invq~Yn~~~~ 213 (298)
.|.|=|| ...|. ..++...|+++++.. +....+|++..- |+ |+......+ ....+|||-|=+|...
T Consensus 19 ~gaDiID--~K~P~~GaLGA~~~~vi~~i~~~~--~~~~pvSAtiGDlp~~p~~~~~aa~~~a~~GvdyvKvGl~g~~-- 92 (235)
T PF04476_consen 19 GGADIID--LKNPAEGALGALFPWVIREIVAAV--PGRKPVSATIGDLPMKPGTASLAALGAAATGVDYVKVGLFGCK-- 92 (235)
T ss_pred CCCCEEE--ccCCCCCCCCCCCHHHHHHHHHHc--CCCCceEEEecCCCCCchHHHHHHHHHHhcCCCEEEEecCCCC--
Confidence 3455554 56665 367888999999874 334578888642 21 221111111 1357999999999432
Q ss_pred CCCCCChhhHHHHHHHHh---cCCCCCeEEEeeecCCCCCCCCCcChHHHHHHHHHhhhcCCCCceEEEEecccc
Q 035598 214 QYSSGNIGNLLNAWKQWT---SDIPANKIFLGLPASPAAAGSGFIPTADLISKVLPAIKGSAKYGGVMLWSKYYD 285 (298)
Q Consensus 214 ~~~~~~~~~~~~~~~~~~---~g~p~~KlvlG~p~~~~~a~~gy~~~~~l~~~~~~~~~~~~~~gGvm~W~~~~d 285 (298)
+.+.-.+.++.+. +...+++.++.+-.... .--|-++|-++.+. .....|-|+|+=.+.=|
T Consensus 93 -----~~~~a~e~l~~v~~av~~~~~~~~vVAv~yAD~-~r~~~~~p~~l~~~-----a~~aG~~gvMlDTa~Kd 156 (235)
T PF04476_consen 93 -----DYDEAIEALEAVVRAVKDFDPDKKVVAVGYADA-QRVGSISPLDLPEI-----AAEAGFDGVMLDTADKD 156 (235)
T ss_pred -----CHHHHHHHHHHHHHHHhhhCCCcEEEEEEecch-hhhcCCCHHHHHHH-----HHHcCCCEEEEecccCC
Confidence 1111222233322 23455666666555421 11244567666432 22357899998554433
No 100
>cd06419 GH25_muramidase_2 Uncharacterized bacterial muramidase containing a glycosyl hydrolase family 25 (GH25) catalytic domain. Endo-N-acetylmuramidases are lysozymes (also referred to as peptidoglycan hydrolases) that degrade bacterial cell walls by catalyzing the hydrolysis of 1,4-beta-linkages between N-acetylmuramic acid and N-acetyl-D-glucosamine residues.
Probab=45.28 E-value=69 Score=27.72 Aligned_cols=17 Identities=24% Similarity=0.419 Sum_probs=14.8
Q ss_pred cchHHHHHHHHhCCCeE
Q 035598 83 TGLSSDIKSCQAKGVKV 99 (298)
Q Consensus 83 ~~l~~~i~~~q~~g~KV 99 (298)
+.+.+..+.+++.|++|
T Consensus 46 ~~f~~n~~~A~~~Gl~v 62 (190)
T cd06419 46 DNFLSNFSRAQGTGLSV 62 (190)
T ss_pred hhHHHHHHHHHHCCCCE
Confidence 46788999999999998
No 101
>PRK02227 hypothetical protein; Provisional
Probab=44.61 E-value=2.4e+02 Score=25.51 Aligned_cols=121 Identities=21% Similarity=0.216 Sum_probs=66.0
Q ss_pred ccCeEeeecCCCC----chhHHHHHHHHHhhhhCCCceEEEEcCCC-CC-Ccchhhhhh--hcCCCceEEeeecCCCCCC
Q 035598 143 VLDGIDLDIEGGT----SQHWDELARFLAGYSQKGKKVYVTAAPQC-PF-PDAWIGNAL--KTGVFDYVWVQFYNNPPCQ 214 (298)
Q Consensus 143 ~~DGiDiD~E~p~----~~~~~~li~~LR~~~~~g~~~llT~Ap~~-~~-~~~~~~~~l--~~~~~D~invq~Yn~~~~~ 214 (298)
|-|=| |...|. ..++...|+++++.. ++...+|++..- |+ |.......+ ....+|||-|=+|...
T Consensus 20 GaDiI--DvK~P~~GaLGA~~p~vir~Iv~~~--~~~~pvSAtiGD~p~~p~~~~~aa~~~a~~GvDyVKvGl~~~~--- 92 (238)
T PRK02227 20 GADII--DVKNPKEGSLGANFPWVIREIVAAV--PGRKPVSATIGDVPYKPGTISLAALGAAATGADYVKVGLYGGK--- 92 (238)
T ss_pred CCCEE--EccCCCCCCCCCCCHHHHHHHHHHh--CCCCCceeeccCCCCCchHHHHHHHHHHhhCCCEEEEcCCCCC---
Confidence 44444 466675 268889999999885 344578887652 22 211111112 1467999999998432
Q ss_pred CCCCChhhHHHHHHHHh---cCCCCCeEEEeeecCCCCCCCCCcChHHHHHHHHHhhhcCCCCceEEEE
Q 035598 215 YSSGNIGNLLNAWKQWT---SDIPANKIFLGLPASPAAAGSGFIPTADLISKVLPAIKGSAKYGGVMLW 280 (298)
Q Consensus 215 ~~~~~~~~~~~~~~~~~---~g~p~~KlvlG~p~~~~~a~~gy~~~~~l~~~~~~~~~~~~~~gGvm~W 280 (298)
. .......|+.-. +..++.+.++.+-.... .--|=++|.++... ....+|-|+|+=
T Consensus 93 ~----~~~~~~~~~~v~~a~~~~~~~~~vVav~yaD~-~r~~~~~~~~l~~~-----a~~aGf~g~MlD 151 (238)
T PRK02227 93 T----AEEAVEVMKAVVRAVKDLDPGKIVVAAGYADA-HRVGSVSPLSLPAI-----AADAGFDGAMLD 151 (238)
T ss_pred c----HHHHHHHHHHHHHhhhhcCCCCeEEEEEeccc-ccccCCChHHHHHH-----HHHcCCCEEEEe
Confidence 1 111122222211 23456677777665432 11234566665432 224689999983
No 102
>cd02803 OYE_like_FMN_family Old yellow enzyme (OYE)-like FMN binding domain. OYE was the first flavin-dependent enzyme identified, however its true physiological role remains elusive to this day. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=44.42 E-value=47 Score=30.83 Aligned_cols=22 Identities=27% Similarity=0.446 Sum_probs=16.0
Q ss_pred ccchHHHHHHHHhCCCeEEEEE
Q 035598 82 CTGLSSDIKSCQAKGVKVLLSL 103 (298)
Q Consensus 82 ~~~l~~~i~~~q~~g~KVllSi 103 (298)
.+.+++.+..+|+.|-|+++=|
T Consensus 76 ~~~~~~~~~~vh~~g~~~~~Ql 97 (327)
T cd02803 76 IPGLRKLTEAVHAHGAKIFAQL 97 (327)
T ss_pred HHHHHHHHHHHHhCCCHhhHHh
Confidence 3456677778899998887555
No 103
>cd06604 GH31_glucosidase_II_MalA Alpha-glucosidase II (alpha-D-glucoside glucohydrolase) is a glycosyl hydrolase family 31 (GH31) enzyme, found in bacteria and plants, which has exo-alpha-1,4-glucosidase and oligo-1,6-glucosidase activities. Alpha-glucosidase II has been characterized in Bacillus thermoamyloliquefaciens where it forms a homohexamer. This family also includes the MalA alpha-glucosidase from Sulfolobus sulfataricus and the AglA alpha-glucosidase from Picrophilus torridus. MalA is part of the carbohydrate-metabolizing machinery that allows this organism to utilize carbohydrates, such as maltose, as the sole carbon and energy source.
Probab=43.73 E-value=75 Score=29.92 Aligned_cols=23 Identities=22% Similarity=0.231 Sum_probs=18.4
Q ss_pred CccchHHHHHHHHhCCCeEEEEE
Q 035598 81 GCTGLSSDIKSCQAKGVKVLLSL 103 (298)
Q Consensus 81 ~~~~l~~~i~~~q~~g~KVllSi 103 (298)
.+++..+.|+.+|++|+|+++.+
T Consensus 62 ~fPdp~~m~~~l~~~g~~~~~~~ 84 (339)
T cd06604 62 RFPDPKELIKELHEQGFKVVTII 84 (339)
T ss_pred cCCCHHHHHHHHHHCCCEEEEEE
Confidence 34566788999999999999765
No 104
>cd02940 DHPD_FMN Dihydropyrimidine dehydrogenase (DHPD) FMN-binding domain. DHPD catalyzes the first step in pyrimidine degradation: the NADPH-dependent reduction of uracil and thymine to the corresponding 5,6-dihydropyrimidines. DHPD contains two FAD, two FMN, and eight [4Fe-4S] clusters, arranged in two electron transfer chains that pass the dimer interface twice. Two of the Fe-S clusters show a hitherto unobserved coordination involving a glutamine residue.
Probab=43.65 E-value=1.1e+02 Score=28.23 Aligned_cols=76 Identities=12% Similarity=0.166 Sum_probs=45.0
Q ss_pred HHHHHHHHhC--CCeEEEEEeCCCCCCCCCCHHHHHHHHHHHHHhhcCCCCCCcCCCCCccCeEeeecCCCCc-------
Q 035598 86 SSDIKSCQAK--GVKVLLSLGGAAGSYSLTSTQDAKQVATYLWNNFLGGHSSSRPLGPAVLDGIDLDIEGGTS------- 156 (298)
Q Consensus 86 ~~~i~~~q~~--g~KVllSiGG~~~~~~~~~~~~~~~fa~~v~~~f~~g~s~~~~~~~~~~DGiDiD~E~p~~------- 156 (298)
.+.++.+++. ++.+++|+-|. .++ +.|++.+ +.+.+.+.|+||||+-.|..
T Consensus 87 ~~~~~~~~~~~~~~p~i~si~G~------~~~---~~~~~~a-----------~~~~~~gad~ielN~sCP~~~~~~~~G 146 (299)
T cd02940 87 LKEIRELKKDFPDKILIASIMCE------YNK---EDWTELA-----------KLVEEAGADALELNFSCPHGMPERGMG 146 (299)
T ss_pred HHHHHHHHhhCCCCeEEEEecCC------CCH---HHHHHHH-----------HHHHhcCCCEEEEECCCCCCCCCCCCc
Confidence 3445554432 57889999874 122 2344433 23456789999999999863
Q ss_pred -------hhHHHHHHHHHhhhhCCCceEEEEcCC
Q 035598 157 -------QHWDELARFLAGYSQKGKKVYVTAAPQ 183 (298)
Q Consensus 157 -------~~~~~li~~LR~~~~~g~~~llT~Ap~ 183 (298)
+....+++++|+.. .....+=+.|.
T Consensus 147 ~~l~~~~~~~~~iv~~v~~~~--~~Pv~vKl~~~ 178 (299)
T cd02940 147 AAVGQDPELVEEICRWVREAV--KIPVIAKLTPN 178 (299)
T ss_pred hhhccCHHHHHHHHHHHHHhc--CCCeEEECCCC
Confidence 23556677777652 23344445553
No 105
>cd02069 methionine_synthase_B12_BD B12 binding domain of methionine synthase. This domain binds methylcobalamin, which it uses as an intermediate methyl carrier from methyltetrahydrofolate (CH3H4folate) to homocysteine (Hcy).
Probab=43.33 E-value=15 Score=32.40 Aligned_cols=25 Identities=28% Similarity=0.497 Sum_probs=21.0
Q ss_pred cchHHHHHHHHhCCCeEEEEEeCCC
Q 035598 83 TGLSSDIKSCQAKGVKVLLSLGGAA 107 (298)
Q Consensus 83 ~~l~~~i~~~q~~g~KVllSiGG~~ 107 (298)
..+.+.++.+++.+.++.+-+||..
T Consensus 154 ~~~~~~i~~L~~~~~~~~i~vGG~~ 178 (213)
T cd02069 154 DEMVEVAEEMNRRGIKIPLLIGGAA 178 (213)
T ss_pred HHHHHHHHHHHhcCCCCeEEEEChh
Confidence 4667888899988889999999964
No 106
>PF00834 Ribul_P_3_epim: Ribulose-phosphate 3 epimerase family; InterPro: IPR000056 Ribulose-phosphate 3-epimerase (5.1.3.1 from EC) (also known as pentose-5-phosphate 3-epimerase or PPE) is the enzyme that converts D-ribulose 5-phosphate into D-xylulose 5-phosphate in Calvin's reductive pentose phosphate cycle. In Ralstonia eutropha (Alcaligenes eutrophus) two copies of the gene coding for PPE are known [], one is chromosomally encoded P40117 from SWISSPROT, the other one is on a plasmid Q04539 from SWISSPROT. PPE has been found in a wide range of bacteria, archaebacteria, fungi and plants. All the proteins have from 209 to 241 amino acid residues. The enzyme has a TIM barrel structure.; GO: 0004750 ribulose-phosphate 3-epimerase activity, 0005975 carbohydrate metabolic process; PDB: 3CTL_A 3CT7_D 3CU2_A 1RPX_A 3OVR_A 3OVP_A 3OVQ_B 3QC3_B 3INP_A 1TQJ_D ....
Probab=42.72 E-value=57 Score=28.55 Aligned_cols=63 Identities=21% Similarity=0.200 Sum_probs=43.8
Q ss_pred CCCccCeEeeecCCCCchhHHHHHHHHHhhhhCCCceEEEEcCCCCCCcchhhhhhhcCCCceEEeeecCCC
Q 035598 140 GPAVLDGIDLDIEGGTSQHWDELARFLAGYSQKGKKVYVTAAPQCPFPDAWIGNALKTGVFDYVWVQFYNNP 211 (298)
Q Consensus 140 ~~~~~DGiDiD~E~p~~~~~~~li~~LR~~~~~g~~~llT~Ap~~~~~~~~~~~~l~~~~~D~invq~Yn~~ 211 (298)
.+.|-|-|=+.+|.. .+..++++.+|+. |.+.-|+.-|..|. ..+..++ ..+|+|.+|.=+.+
T Consensus 77 ~~~g~~~i~~H~E~~--~~~~~~i~~ik~~---g~k~GialnP~T~~--~~~~~~l--~~vD~VlvMsV~PG 139 (201)
T PF00834_consen 77 AEAGADYITFHAEAT--EDPKETIKYIKEA---GIKAGIALNPETPV--EELEPYL--DQVDMVLVMSVEPG 139 (201)
T ss_dssp HHHT-SEEEEEGGGT--TTHHHHHHHHHHT---TSEEEEEE-TTS-G--GGGTTTG--CCSSEEEEESS-TT
T ss_pred HhcCCCEEEEcccch--hCHHHHHHHHHHh---CCCEEEEEECCCCc--hHHHHHh--hhcCEEEEEEecCC
Confidence 466889999999943 4666788999986 66667888887653 2344555 68999999998754
No 107
>cd00599 GH25_muramidase Endo-N-acetylmuramidases (muramidases) are lysozymes (also referred to as peptidoglycan hydrolases) that degrade bacterial cell walls by catalyzing the hydrolysis of 1,4-beta-linkages between N-acetylmuramic acid and N-acetyl-D-glucosamine residues. This family of muramidases contains a glycosyl hydrolase family 25 (GH25) catalytic domain and is found in bacteria, fungi, slime molds, round worms, protozoans and bacteriophages. The bacteriophage members are referred to as endolysins which are involved in lysing the host cell at the end of the replication cycle to allow release of mature phage particles. Endolysins are typically modular enzymes consisting of a catalytically active domain that hydrolyzes the peptidoglycan cell wall and a cell wall-binding domain that anchors the protein to the cell wall. Endolysins generally have narrow substrate specificities with either intra-species or intra-genus bacteriolytic activity.
Probab=42.65 E-value=80 Score=26.60 Aligned_cols=17 Identities=18% Similarity=0.325 Sum_probs=14.0
Q ss_pred cchHHHHHHHHhCCCeE
Q 035598 83 TGLSSDIKSCQAKGVKV 99 (298)
Q Consensus 83 ~~l~~~i~~~q~~g~KV 99 (298)
+.+.+.++.|++.|+++
T Consensus 38 ~~~~~~~~~a~~aGl~~ 54 (186)
T cd00599 38 PKFATNRARARAAGLLV 54 (186)
T ss_pred hHHHHHHHHHHHCCCce
Confidence 46788999999999765
No 108
>PF00128 Alpha-amylase: Alpha amylase, catalytic domain; InterPro: IPR006047 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Enzymes containing this domain, such as alpha-amylase, belong to family 13 (GH13 from CAZY) of the glycosyl hydrolases. The maltogenic alpha-amylase is an enzyme which catalyses hydrolysis of (1-4)-alpha-D-glucosidic linkages in polysaccharides so as to remove successive alpha-maltose residues from the non-reducing ends of the chains in the conversion of starch to maltose. Other enzymes include neopullulanase, which hydrolyses pullulan to panose, and cyclomaltodextrinase, which hydrolyses cyclodextrins. This entry represents the catalytic domain found in several protein members of this family. It has a structure consisting of an 8 stranded alpha/beta barrel that contains the active site, interrupted by a ~70 amino acid calcium-binding domain protruding between beta strand 3 and alpha helix 3, and a carboxyl-terminal Greek key beta-barrel domain []. More information about this protein can be found at Protein of the Month: alpha-Amylase [].; GO: 0003824 catalytic activity, 0043169 cation binding, 0005975 carbohydrate metabolic process; PDB: 3FAX_A 3FAW_A 2DH3_B 2DH2_A 1CIU_A 1A47_A 3BMW_A 3BMV_A 2FH8_A 2FH6_A ....
Probab=41.81 E-value=22 Score=31.88 Aligned_cols=24 Identities=17% Similarity=0.429 Sum_probs=21.1
Q ss_pred CCccchHHHHHHHHhCCCeEEEEE
Q 035598 80 NGCTGLSSDIKSCQAKGVKVLLSL 103 (298)
Q Consensus 80 ~~~~~l~~~i~~~q~~g~KVllSi 103 (298)
++.++|++.|++||++|+||++-+
T Consensus 49 Gt~~d~~~Lv~~~h~~gi~VilD~ 72 (316)
T PF00128_consen 49 GTMEDFKELVDAAHKRGIKVILDV 72 (316)
T ss_dssp BHHHHHHHHHHHHHHTTCEEEEEE
T ss_pred chhhhhhhhhhccccccceEEEee
Confidence 456789999999999999999876
No 109
>PRK05286 dihydroorotate dehydrogenase 2; Reviewed
Probab=40.55 E-value=2.7e+02 Score=26.36 Aligned_cols=106 Identities=18% Similarity=0.165 Sum_probs=57.9
Q ss_pred hHHHHHHHHhCCCeEEEEEeCCCCCCCCCCHHHHHHHHHHHHHhhcCCCCCCcCCCCCccCeEeeecCCCCc--------
Q 035598 85 LSSDIKSCQAKGVKVLLSLGGAAGSYSLTSTQDAKQVATYLWNNFLGGHSSSRPLGPAVLDGIDLDIEGGTS-------- 156 (298)
Q Consensus 85 l~~~i~~~q~~g~KVllSiGG~~~~~~~~~~~~~~~fa~~v~~~f~~g~s~~~~~~~~~~DGiDiD~E~p~~-------- 156 (298)
+.+.++..+ .++.|++||+|...+.. ....+.|++.+- -+.+ +.|+++|+.-.|..
T Consensus 127 ~~~~l~~~~-~~~pvivsI~~~~~~~~---~~~~~d~~~~~~-----------~~~~-~ad~lelN~scP~~~g~~~~~~ 190 (344)
T PRK05286 127 LAERLKKAY-RGIPLGINIGKNKDTPL---EDAVDDYLICLE-----------KLYP-YADYFTVNISSPNTPGLRDLQY 190 (344)
T ss_pred HHHHHHHhc-CCCcEEEEEecCCCCCc---ccCHHHHHHHHH-----------HHHh-hCCEEEEEccCCCCCCcccccC
Confidence 345555544 57889999998642111 112234555442 2333 48999999988753
Q ss_pred -hhHHHHHHHHHhhhhC---CCceEEEEcCCCCCCc-chhhhhhhcCCCceEEee
Q 035598 157 -QHWDELARFLAGYSQK---GKKVYVTAAPQCPFPD-AWIGNALKTGVFDYVWVQ 206 (298)
Q Consensus 157 -~~~~~li~~LR~~~~~---g~~~llT~Ap~~~~~~-~~~~~~l~~~~~D~invq 206 (298)
+.+.++++++|+.... ....++=+.|.....+ ..+...+....+|.|.+.
T Consensus 191 ~~~~~eiv~aVr~~~~~~~~~~PV~vKlsp~~~~~~~~~ia~~l~~~Gadgi~~~ 245 (344)
T PRK05286 191 GEALDELLAALKEAQAELHGYVPLLVKIAPDLSDEELDDIADLALEHGIDGVIAT 245 (344)
T ss_pred HHHHHHHHHHHHHHHhccccCCceEEEeCCCCCHHHHHHHHHHHHHhCCcEEEEe
Confidence 3566788888886420 0234555555422101 011122334567888775
No 110
>cd06414 GH25_LytC-like The LytC lysozyme of Streptococcus pneumoniae is a bacterial cell wall hydrolase that cleaves the beta1-4-glycosydic bond located between the N-acetylmuramoyl-N-glucosaminyl residues of the cell wall polysaccharide chains. LytC is composed of a C-terminal glycosyl hydrolase family 25 (GH25) domain and an N-terminal choline-binding module (CBM) consisting of eleven homologous repeats that specifically recognizes the choline residues of pneumococcal lipoteichoic and teichoic acids. This domain arrangement is the reverse of the major pneumococcal autolysin, LytA, and the CPL-1-like lytic enzymes of the pneumococcal bacteriophages, in which the CBM (consisting of six repeats) is at the C-terminus. This model represents the C-terminal catalytic domain of the LytC-like enzymes.
Probab=39.61 E-value=1e+02 Score=26.42 Aligned_cols=17 Identities=29% Similarity=0.487 Sum_probs=14.3
Q ss_pred cchHHHHHHHHhCCCeE
Q 035598 83 TGLSSDIKSCQAKGVKV 99 (298)
Q Consensus 83 ~~l~~~i~~~q~~g~KV 99 (298)
+.+.+.++.+++.|+++
T Consensus 42 ~~~~~~~~~A~~aGl~~ 58 (191)
T cd06414 42 KYFEENIKGAKAAGIPV 58 (191)
T ss_pred HHHHHHHHHHHHCCCce
Confidence 56789999999999875
No 111
>cd06601 GH31_lyase_GLase GLases (alpha-1,4-glucan lyases) are glycosyl hydrolase family 31 (GH31) enzymes that degrade alpha-1,4-glucans and maltooligosaccharides via a nonhydrolytic pathway to yield 1,5-D-anhydrofructose from the nonreducing end. GLases cleave the bond between C1 and O1 of the nonreducing sugar residue of alpha-glucans to generate a monosaccharide product with a double bond between C1 and C2. This family corresponds to subgroup 2 in the Ernst et al classification of GH31 enzymes.
Probab=39.02 E-value=73 Score=30.17 Aligned_cols=63 Identities=16% Similarity=0.076 Sum_probs=41.5
Q ss_pred CccchHHHHHHHHhCCCeEEEEE-------eCCCCC---CCCCCHHHHHHHHHHHHHhhcCCCCCCcCCCCCccCeEeee
Q 035598 81 GCTGLSSDIKSCQAKGVKVLLSL-------GGAAGS---YSLTSTQDAKQVATYLWNNFLGGHSSSRPLGPAVLDGIDLD 150 (298)
Q Consensus 81 ~~~~l~~~i~~~q~~g~KVllSi-------GG~~~~---~~~~~~~~~~~fa~~v~~~f~~g~s~~~~~~~~~~DGiDiD 150 (298)
.++...+.++.+|++|.|+++.+ .+|.+. ..|.+++.|+-+.+.+. .+.+.|+||+=+|
T Consensus 62 ~FPdp~~mv~~L~~~G~klv~~i~P~i~~g~~~~~~~~~pDftnp~ar~wW~~~~~-----------~l~~~Gv~~~W~D 130 (332)
T cd06601 62 GFPNPKEMFDNLHNKGLKCSTNITPVISYGGGLGSPGLYPDLGRPDVREWWGNQYK-----------YLFDIGLEFVWQD 130 (332)
T ss_pred CCCCHHHHHHHHHHCCCeEEEEecCceecCccCCCCceeeCCCCHHHHHHHHHHHH-----------HHHhCCCceeecC
Confidence 35566788999999999998765 122222 24667877776655442 2445688888888
Q ss_pred cCCC
Q 035598 151 IEGG 154 (298)
Q Consensus 151 ~E~p 154 (298)
.-.|
T Consensus 131 mnEp 134 (332)
T cd06601 131 MTTP 134 (332)
T ss_pred CCCc
Confidence 6544
No 112
>cd04741 DHOD_1A_like Dihydroorotate dehydrogenase (DHOD) class 1A FMN-binding domain. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively.
Probab=37.92 E-value=1.2e+02 Score=28.10 Aligned_cols=77 Identities=12% Similarity=0.088 Sum_probs=46.3
Q ss_pred chHHHHHHHHh----CCCeEEEEEeCCCCCCCCCCHHHHHHHHHHHHHhhcCCCCCCcCCCCC---ccCeEeeecCCCCc
Q 035598 84 GLSSDIKSCQA----KGVKVLLSLGGAAGSYSLTSTQDAKQVATYLWNNFLGGHSSSRPLGPA---VLDGIDLDIEGGTS 156 (298)
Q Consensus 84 ~l~~~i~~~q~----~g~KVllSiGG~~~~~~~~~~~~~~~fa~~v~~~f~~g~s~~~~~~~~---~~DGiDiD~E~p~~ 156 (298)
.+.+.++..++ .++.|.+||+|. +++-.+.+.. +.++ +.|+|||+.-.|..
T Consensus 75 ~~~~~i~~~~~~~~~~~~pvivsi~g~--------~~~~~~~~~~--------------~~~~~~~~ad~ielN~sCPn~ 132 (294)
T cd04741 75 YYLEYIRTISDGLPGSAKPFFISVTGS--------AEDIAAMYKK--------------IAAHQKQFPLAMELNLSCPNV 132 (294)
T ss_pred HHHHHHHHHhhhccccCCeEEEECCCC--------HHHHHHHHHH--------------HHhhccccccEEEEECCCCCC
Confidence 34455655433 467899999873 1222222222 2233 69999999998862
Q ss_pred ----------hhHHHHHHHHHhhhhCCCceEEEEcCCC
Q 035598 157 ----------QHWDELARFLAGYSQKGKKVYVTAAPQC 184 (298)
Q Consensus 157 ----------~~~~~li~~LR~~~~~g~~~llT~Ap~~ 184 (298)
+...++++++|+.. ....++=++|..
T Consensus 133 ~~~~~~~~~~~~~~~i~~~v~~~~--~iPv~vKl~p~~ 168 (294)
T cd04741 133 PGKPPPAYDFDATLEYLTAVKAAY--SIPVGVKTPPYT 168 (294)
T ss_pred CCcccccCCHHHHHHHHHHHHHhc--CCCEEEEeCCCC
Confidence 34566777777763 344566677653
No 113
>PRK00109 Holliday junction resolvase-like protein; Reviewed
Probab=37.82 E-value=94 Score=25.42 Aligned_cols=41 Identities=15% Similarity=0.276 Sum_probs=23.8
Q ss_pred HHHHHhcCCCCCeEEEeeecCCCCCCCCCcCh-HHHHHHHHHhhhc
Q 035598 226 AWKQWTSDIPANKIFLGLPASPAAAGSGFIPT-ADLISKVLPAIKG 270 (298)
Q Consensus 226 ~~~~~~~g~p~~KlvlG~p~~~~~a~~gy~~~-~~l~~~~~~~~~~ 270 (298)
.+..+.+..++++||+|+|...+ |..++ ....+...+.++.
T Consensus 45 ~l~~~i~~~~i~~iVvGlP~~~~----G~~~~~~~~v~~f~~~L~~ 86 (138)
T PRK00109 45 RLEKLIKEWQPDGLVVGLPLNMD----GTEGPRTERARKFANRLEG 86 (138)
T ss_pred HHHHHHHHhCCCEEEEeccCCCC----CCcCHHHHHHHHHHHHHHH
Confidence 34444444578999999999853 44444 2222334455543
No 114
>cd06524 GH25_YegX-like YegX is an uncharacterized bacterial protein with a glycosyl hydrolase family 25 (GH25) catalytic domain that is similar in sequence to the CH-type (Chalaropsis-type) lysozymes of the GH25 family of endolysins.
Probab=37.23 E-value=1.1e+02 Score=26.20 Aligned_cols=17 Identities=6% Similarity=0.262 Sum_probs=14.5
Q ss_pred cchHHHHHHHHhCCCeE
Q 035598 83 TGLSSDIKSCQAKGVKV 99 (298)
Q Consensus 83 ~~l~~~i~~~q~~g~KV 99 (298)
+.+.+.++.|++.|+++
T Consensus 42 ~~~~~n~~~a~~aGl~~ 58 (194)
T cd06524 42 PDFPTNWEGAKEAGIIR 58 (194)
T ss_pred hHHHHHHHHHHHcCCce
Confidence 46789999999999875
No 115
>cd06593 GH31_xylosidase_YicI YicI alpha-xylosidase is a glycosyl hydrolase family 31 (GH31) enzyme that catalyzes the release of an alpha-xylosyl residue from the non-reducing end of alpha-xyloside substrates such as alpha-xylosyl fluoride and isoprimeverose. YicI forms a homohexamer (a trimer of dimers). All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein. The YicI family corresponds to subgroup 4 in the Ernst et al classification of GH31 enzymes.
Probab=36.92 E-value=75 Score=29.37 Aligned_cols=23 Identities=22% Similarity=0.218 Sum_probs=18.8
Q ss_pred CccchHHHHHHHHhCCCeEEEEE
Q 035598 81 GCTGLSSDIKSCQAKGVKVLLSL 103 (298)
Q Consensus 81 ~~~~l~~~i~~~q~~g~KVllSi 103 (298)
.++...+.|+.+|++|+|+++.+
T Consensus 64 ~FPd~~~~i~~l~~~G~~~~~~~ 86 (308)
T cd06593 64 RFPDPEGMLSRLKEKGFKVCLWI 86 (308)
T ss_pred cCCCHHHHHHHHHHCCCeEEEEe
Confidence 45667888999999999998865
No 116
>PF01055 Glyco_hydro_31: Glycosyl hydrolases family 31 ; InterPro: IPR000322 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 31 GH31 from CAZY comprises enzymes with several known activities; alpha-glucosidase (3.2.1.20 from EC), alpha-galactosidase (3.2.1.22 from EC); glucoamylase (3.2.1.3 from EC), sucrase-isomaltase (3.2.1.48 from EC); isomaltase (3.2.1.10 from EC); alpha-xylosidase (3.2.1 from EC); alpha-glucan lyase (4.2.2.13 from EC). Glycoside hydrolase family 31 groups a number of glycosyl hydrolases on the basis of sequence similarities [, , ] An aspartic acid has been implicated [] in the catalytic activity of sucrase, isomaltase, and lysosomal alpha-glucosidase.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3L4U_A 3L4X_A 3L4W_A 3L4V_A 3CTT_A 2QMJ_A 2QLY_A 3L4Z_A 3L4Y_A 3L4T_A ....
Probab=36.33 E-value=1.2e+02 Score=29.56 Aligned_cols=64 Identities=19% Similarity=0.122 Sum_probs=41.8
Q ss_pred CccchHHHHHHHHhCCCeEEEEEeCC---CCC----------------------------------CCCCCHHHHHHHHH
Q 035598 81 GCTGLSSDIKSCQAKGVKVLLSLGGA---AGS----------------------------------YSLTSTQDAKQVAT 123 (298)
Q Consensus 81 ~~~~l~~~i~~~q~~g~KVllSiGG~---~~~----------------------------------~~~~~~~~~~~fa~ 123 (298)
.++...+.++.+|++|+|+++.+==. ... ..|++++.++-+.+
T Consensus 81 ~FPd~~~~~~~l~~~G~~~~~~~~P~v~~~~~~~~~~~~~~~~~~~v~~~~g~~~~~~~w~g~~~~~Dftnp~a~~w~~~ 160 (441)
T PF01055_consen 81 RFPDPKQMIDELHDQGIKVVLWVHPFVSNDSPDYENYDEAKEKGYLVKNPDGSPYIGRVWPGKGGFIDFTNPEARDWWKE 160 (441)
T ss_dssp TTTTHHHHHHHHHHTT-EEEEEEESEEETTTTB-HHHHHHHHTT-BEBCTTSSB-EEEETTEEEEEB-TTSHHHHHHHHH
T ss_pred cccchHHHHHhHhhCCcEEEEEeecccCCCCCcchhhhhHhhcCceeecccCCcccccccCCcccccCCCChhHHHHHHH
Confidence 45678899999999999999987421 000 12445665665655
Q ss_pred HHHHhhcCCCCCCcCCCCCccCeEeeecCCC
Q 035598 124 YLWNNFLGGHSSSRPLGPAVLDGIDLDIEGG 154 (298)
Q Consensus 124 ~v~~~f~~g~s~~~~~~~~~~DGiDiD~E~p 154 (298)
.+. ++++++|+||+=+|+-.|
T Consensus 161 ~~~----------~~~~~~Gvdg~w~D~~E~ 181 (441)
T PF01055_consen 161 QLK----------ELLDDYGVDGWWLDFGEP 181 (441)
T ss_dssp HHH----------HHHTTST-SEEEEESTTT
T ss_pred HHH----------HHHhccCCceEEeecCCc
Confidence 553 556778999999999433
No 117
>smart00642 Aamy Alpha-amylase domain.
Probab=36.11 E-value=38 Score=28.59 Aligned_cols=59 Identities=15% Similarity=0.151 Sum_probs=34.5
Q ss_pred ccCCCCccEEEEceeeecCC-----CCCccccCCCCCCCCCCCccchHHHHHHHHhCCCeEEEEE
Q 035598 44 TCSTGNYEYVILSFLATFGN-----GQTPMINLAGHCDPYSNGCTGLSSDIKSCQAKGVKVLLSL 103 (298)
Q Consensus 44 ~~~~~~~thii~AF~~~~~~-----g~~~~~~~~~~~~~~~~~~~~l~~~i~~~q~~g~KVllSi 103 (298)
++..-.+|+|-+.=+..... .++-..++.. .+|.-++.+++.+.|++||++|+||++=+
T Consensus 27 yl~~lG~~~I~l~Pi~~~~~~~~~~~gY~~~d~~~-i~~~~Gt~~d~~~lv~~~h~~Gi~vilD~ 90 (166)
T smart00642 27 YLKDLGVTAIWLSPIFESPQGYPSYHGYDISDYKQ-IDPRFGTMEDFKELVDAAHARGIKVILDV 90 (166)
T ss_pred HHHHCCCCEEEECcceeCCCCCCCCCCcCccccCC-CCcccCCHHHHHHHHHHHHHCCCEEEEEE
Confidence 45566788887753332221 1111112211 11222455789999999999999999864
No 118
>PRK09936 hypothetical protein; Provisional
Probab=36.09 E-value=57 Score=30.42 Aligned_cols=84 Identities=19% Similarity=0.299 Sum_probs=49.5
Q ss_pred cchhHHHHHHHHHHHHhccCCCCcEEEEeCCCCC-CC------CcccccCCCCccEEEEceeeecCCCCCccccCCCCCC
Q 035598 4 RTAISLSFISSLLLMLATGSNAGGIAIYWGQNGN-EG------TLKETCSTGNYEYVILSFLATFGNGQTPMINLAGHCD 76 (298)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~vv~Y~g~~~~-~~------~l~~~~~~~~~thii~AF~~~~~~g~~~~~~~~~~~~ 76 (298)
|++|+++++++|+++.+.+ ...+. |=+++.+ +- .+-.....-.|+++|+=+... ++. ++.+
T Consensus 2 ~~~~~~~l~~l~~~~~~~a--~~g~F-~Qp~n~d~~~~~~qWq~~~~~~~~~G~~tLivQWt~y-G~~-----~fg~--- 69 (296)
T PRK09936 2 RKFIFVLLTLLLVSPFSQA--MKGIF-YQPQNRDSQVTDTQWQGLWSQLRLQGFDTLVVQWTRY-GDA-----DFGG--- 69 (296)
T ss_pred hhHHHHHHHHHHcCchhhc--cccce-eccccccCCCCHHHHHHHHHHHHHcCCcEEEEEeeec-cCC-----Cccc---
Confidence 6788888877777765532 22332 3333433 11 122223456889998866432 332 2321
Q ss_pred CCCCCccchHHHHHHHHhCCCeEEEEE
Q 035598 77 PYSNGCTGLSSDIKSCQAKGVKVLLSL 103 (298)
Q Consensus 77 ~~~~~~~~l~~~i~~~q~~g~KVllSi 103 (298)
...-+...++..+++|+||.+.+
T Consensus 70 ----~~g~La~~l~~A~~~Gl~v~vGL 92 (296)
T PRK09936 70 ----QRGWLAKRLAAAQQAGLKLVVGL 92 (296)
T ss_pred ----chHHHHHHHHHHHHcCCEEEEcc
Confidence 12467888999999999998855
No 119
>cd06413 GH25_muramidase_1 Uncharacterized bacterial muramidase containing a glycosyl hydrolase family 25 (GH25) catalytic domain. Endo-N-acetylmuramidases are lysozymes (also referred to as peptidoglycan hydrolases) that degrade bacterial cell walls by catalyzing the hydrolysis of 1,4-beta-linkages between N-acetylmuramic acid and N-acetyl-D-glucosamine residues.
Probab=35.56 E-value=87 Score=26.80 Aligned_cols=17 Identities=12% Similarity=0.309 Sum_probs=14.5
Q ss_pred cchHHHHHHHHhCCCeE
Q 035598 83 TGLSSDIKSCQAKGVKV 99 (298)
Q Consensus 83 ~~l~~~i~~~q~~g~KV 99 (298)
+.+.+.++.|++.|++|
T Consensus 41 ~~~~~~~~~a~~~Gl~v 57 (191)
T cd06413 41 KRFAENWRGARAAGLPR 57 (191)
T ss_pred HHHHHHHHHHHHcCCce
Confidence 46788999999999876
No 120
>PLN03231 putative alpha-galactosidase; Provisional
Probab=35.50 E-value=2.9e+02 Score=26.53 Aligned_cols=44 Identities=14% Similarity=0.155 Sum_probs=31.4
Q ss_pred cCCCCCccCeEeeecCCCCc----hhHHHHHHHHHhhhhCCCceEEEEcCC
Q 035598 137 RPLGPAVLDGIDLDIEGGTS----QHWDELARFLAGYSQKGKKVYVTAAPQ 183 (298)
Q Consensus 137 ~~~~~~~~DGiDiD~E~p~~----~~~~~li~~LR~~~~~g~~~llT~Ap~ 183 (298)
+.+.+.|+|=+-+|+=++.. +.|..|-++|++ .|+..++|+.|.
T Consensus 170 ~~fA~WGVDylK~D~c~~~~~~~~~~y~~m~~AL~~---tGRpIv~Slc~g 217 (357)
T PLN03231 170 DQYASWGIDFIKHDCVFGAENPQLDEILTVSKAIRN---SGRPMIYSLSPG 217 (357)
T ss_pred HHHHHhCCCEEeecccCCCCcccHHHHHHHHHHHHH---hCCCeEEEecCC
Confidence 44567899999999866532 456666666665 488899999763
No 121
>TIGR00250 RNAse_H_YqgF RNAse H-fold protein YqgF. This protein family, which exhibits an RNAse H fold in crystal structure, has been proposed as a putative Holliday junction resolvase, an alternate to RuvC.
Probab=34.99 E-value=1.3e+02 Score=24.37 Aligned_cols=24 Identities=21% Similarity=0.380 Sum_probs=17.7
Q ss_pred HHHHHHhcCCCCCeEEEeeecCCC
Q 035598 225 NAWKQWTSDIPANKIFLGLPASPA 248 (298)
Q Consensus 225 ~~~~~~~~g~p~~KlvlG~p~~~~ 248 (298)
+.+..+.+...+++||+|+|...+
T Consensus 38 ~~l~~~i~~~~~~~iVvGlP~~~d 61 (130)
T TIGR00250 38 SRIEELLKEWTPDKIVVGLPLNMD 61 (130)
T ss_pred HHHHHHHHHcCCCEEEEeccCCCC
Confidence 444555555578999999999864
No 122
>PRK03170 dihydrodipicolinate synthase; Provisional
Probab=34.27 E-value=3.6e+02 Score=24.53 Aligned_cols=113 Identities=16% Similarity=0.187 Sum_probs=62.4
Q ss_pred ccchHHHHHHHHhCCCeEEEEEeCCCCCCCCCCHHHHHHHHHHHHHhhcCCCCCCcCCCCCccCe-EeeecCCCCchhHH
Q 035598 82 CTGLSSDIKSCQAKGVKVLLSLGGAAGSYSLTSTQDAKQVATYLWNNFLGGHSSSRPLGPAVLDG-IDLDIEGGTSQHWD 160 (298)
Q Consensus 82 ~~~l~~~i~~~q~~g~KVllSiGG~~~~~~~~~~~~~~~fa~~v~~~f~~g~s~~~~~~~~~~DG-iDiD~E~p~~~~~~ 160 (298)
...+.+.++.+-+.|++-++- .|..|....-+.++|.++.+.+.... +| +.+= =.-...+..
T Consensus 21 ~~~l~~~i~~l~~~Gv~gi~~-~Gs~GE~~~ls~~Er~~~~~~~~~~~---------------~~~~~vi-~gv~~~~~~ 83 (292)
T PRK03170 21 FAALRKLVDYLIANGTDGLVV-VGTTGESPTLTHEEHEELIRAVVEAV---------------NGRVPVI-AGTGSNSTA 83 (292)
T ss_pred HHHHHHHHHHHHHcCCCEEEE-CCcCCccccCCHHHHHHHHHHHHHHh---------------CCCCcEE-eecCCchHH
Confidence 356788889888899988874 45555444556677888877665311 11 1110 001122445
Q ss_pred HHHHHHHhhhhCCCceEEEEcCCCCCCc-chhhhhhh--cCCCceEEeeecCCCC
Q 035598 161 ELARFLAGYSQKGKKVYVTAAPQCPFPD-AWIGNALK--TGVFDYVWVQFYNNPP 212 (298)
Q Consensus 161 ~li~~LR~~~~~g~~~llT~Ap~~~~~~-~~~~~~l~--~~~~D~invq~Yn~~~ 212 (298)
..++..|...+.|-+.++.+.|....+. ..+-.++. .+..| +-|..||.+.
T Consensus 84 ~~i~~a~~a~~~G~d~v~~~pP~~~~~~~~~i~~~~~~ia~~~~-~pv~lYn~P~ 137 (292)
T PRK03170 84 EAIELTKFAEKAGADGALVVTPYYNKPTQEGLYQHFKAIAEATD-LPIILYNVPG 137 (292)
T ss_pred HHHHHHHHHHHcCCCEEEECCCcCCCCCHHHHHHHHHHHHhcCC-CCEEEEECcc
Confidence 5555555544457777777777532222 11111111 24456 6888998764
No 123
>PRK08318 dihydropyrimidine dehydrogenase subunit B; Validated
Probab=33.76 E-value=1.6e+02 Score=28.62 Aligned_cols=66 Identities=15% Similarity=0.148 Sum_probs=40.7
Q ss_pred CCeEEEEEeCCCCCCCCCCHHHHHHHHHHHHHhhcCCCCCCcCCCCCccCeEeeecCCCCc--------------hhHHH
Q 035598 96 GVKVLLSLGGAAGSYSLTSTQDAKQVATYLWNNFLGGHSSSRPLGPAVLDGIDLDIEGGTS--------------QHWDE 161 (298)
Q Consensus 96 g~KVllSiGG~~~~~~~~~~~~~~~fa~~v~~~f~~g~s~~~~~~~~~~DGiDiD~E~p~~--------------~~~~~ 161 (298)
.+.|++||.|.. +++ .+++.+ +.+++.+.|+|||+.-.|.. +....
T Consensus 99 ~~p~i~si~g~~------~~~---~~~~~a-----------~~~~~~g~d~ielN~scP~~~~~~~~g~~~~~~~~~~~~ 158 (420)
T PRK08318 99 DRALIASIMVEC------NEE---EWKEIA-----------PLVEETGADGIELNFGCPHGMSERGMGSAVGQVPELVEM 158 (420)
T ss_pred CceEEEEeccCC------CHH---HHHHHH-----------HHHHhcCCCEEEEeCCCCCCccccCCcccccCCHHHHHH
Confidence 467889998741 122 344433 23467789999999998861 24556
Q ss_pred HHHHHHhhhhCCCceEEEEcCC
Q 035598 162 LARFLAGYSQKGKKVYVTAAPQ 183 (298)
Q Consensus 162 li~~LR~~~~~g~~~llT~Ap~ 183 (298)
+++++|+.. .....+=++|.
T Consensus 159 i~~~v~~~~--~~Pv~vKl~p~ 178 (420)
T PRK08318 159 YTRWVKRGS--RLPVIVKLTPN 178 (420)
T ss_pred HHHHHHhcc--CCcEEEEcCCC
Confidence 677777652 23455556654
No 124
>PLN02229 alpha-galactosidase
Probab=33.64 E-value=2.4e+02 Score=27.90 Aligned_cols=77 Identities=18% Similarity=0.223 Sum_probs=48.5
Q ss_pred chHHHHHHHHhCCCeEEEEE-eC------CCCCCCCCCHHHHHHHHHHHHHhhcCCCCCCcCCCCCccCeEeeecCCCC-
Q 035598 84 GLSSDIKSCQAKGVKVLLSL-GG------AAGSYSLTSTQDAKQVATYLWNNFLGGHSSSRPLGPAVLDGIDLDIEGGT- 155 (298)
Q Consensus 84 ~l~~~i~~~q~~g~KVllSi-GG------~~~~~~~~~~~~~~~fa~~v~~~f~~g~s~~~~~~~~~~DGiDiD~E~p~- 155 (298)
.++.....+|++|+|.=|=. -| -.|++.. ...+++.||+ +|+|-+-+|+=+..
T Consensus 129 G~k~ladyiH~~GlKfGIy~d~G~~TC~~~pGS~g~-e~~DA~~fA~------------------WGVDylK~D~C~~~~ 189 (427)
T PLN02229 129 GIKLLADYVHSKGLKLGIYSDAGVFTCQVRPGSLFH-EVDDADIFAS------------------WGVDYLKYDNCYNLG 189 (427)
T ss_pred cHHHHHHHHHHCCCceEEeccCCCcccCCCCCCccH-HHHHHHHHHH------------------cCCCEEEecCCCCCC
Confidence 47888889999999874422 12 1222211 2344555654 57888888876543
Q ss_pred ---chhHHHHHHHHHhhhhCCCceEEEEcC
Q 035598 156 ---SQHWDELARFLAGYSQKGKKVYVTAAP 182 (298)
Q Consensus 156 ---~~~~~~li~~LR~~~~~g~~~llT~Ap 182 (298)
.+.|..+-++|++. |+..++|+.+
T Consensus 190 ~~~~~~y~~m~~AL~~t---GRpI~~SlC~ 216 (427)
T PLN02229 190 IKPIERYPPMRDALNAT---GRSIFYSLCE 216 (427)
T ss_pred cchhHHHHHHHHHHHhh---CCCcEEEecC
Confidence 24577777777664 7888888754
No 125
>cd06603 GH31_GANC_GANAB_alpha This family includes the closely related glycosyl hydrolase family 31 (GH31) isozymes, neutral alpha-glucosidase C (GANC) and the alpha subunit of heterodimeric neutral alpha-glucosidase AB (GANAB). Initially distinguished on the basis of differences in electrophoretic mobility in starch gel, GANC and GANAB have been shown to have other differences, including those of substrate specificity. GANC and GANAB are key enzymes in glycogen metabolism that hydrolyze terminal, non-reducing 1,4-linked alpha-D-glucose residues from glycogen in the endoplasmic reticulum. The GANC/GANAB family includes the alpha-glucosidase II (ModA) from Dictyostelium discoideum as well as the alpha-glucosidase II (GLS2, or ROT2 - Reversal of TOR2 lethality protein 2) from Saccharomyces cerevisiae.
Probab=33.52 E-value=1.7e+02 Score=27.57 Aligned_cols=23 Identities=13% Similarity=0.081 Sum_probs=19.2
Q ss_pred CccchHHHHHHHHhCCCeEEEEE
Q 035598 81 GCTGLSSDIKSCQAKGVKVLLSL 103 (298)
Q Consensus 81 ~~~~l~~~i~~~q~~g~KVllSi 103 (298)
.++...+.|+.+|++|+||++.+
T Consensus 62 ~FPdp~~mi~~L~~~G~k~~~~~ 84 (339)
T cd06603 62 KFPDPEKMQEKLASKGRKLVTIV 84 (339)
T ss_pred cCCCHHHHHHHHHHCCCEEEEEe
Confidence 45667788999999999999976
No 126
>PF07172 GRP: Glycine rich protein family; InterPro: IPR010800 This family consists of glycine rich proteins. Some of them may be involved in resistance to environmental stress [].
Probab=32.78 E-value=27 Score=26.97 Aligned_cols=9 Identities=33% Similarity=0.357 Sum_probs=4.9
Q ss_pred CCccchhHH
Q 035598 1 MAFRTAISL 9 (298)
Q Consensus 1 ~~~~~~~~~ 9 (298)
||+.+++.+
T Consensus 1 MaSK~~llL 9 (95)
T PF07172_consen 1 MASKAFLLL 9 (95)
T ss_pred CchhHHHHH
Confidence 885554333
No 127
>PF10566 Glyco_hydro_97: Glycoside hydrolase 97 ; InterPro: IPR019563 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This is the 97th family of glycosidases, in this case bacterial. The central part of the GH97 family protein sequences represents a typical and complete (beta/alpha)8-barrel or catalytic TIM-barrel type domain. The N- and C-terminal parts of the sequences, mainly consisting of beta-strands, most probably form two additional non-catalytic domains with as yet unknown functions. The non-catalytic domains of glycosidases from the alpha-galactosidase and alpha-glucosidase superfamilies are also predominantly composed of beta-strands, and at least some of these domains are involved in oligomerisation and carbohydrate binding. In all known glycosidases with the (beta-alpha)8-barrel fold, the amino acid residues at the active site are located on the C-termini of the beta-strands []. ; PDB: 2JKP_A 2JKE_A 2D73_B 2ZQ0_B 2JKA_A 3A24_A.
Probab=32.40 E-value=42 Score=31.02 Aligned_cols=67 Identities=15% Similarity=0.091 Sum_probs=38.8
Q ss_pred ccchHHHHHHHHhCCCeEEEEEe---CCCCCCCCCCHHHHHHHHHHHHHhhcCCCCCCcCCCCCccCeEeeecCCCCchh
Q 035598 82 CTGLSSDIKSCQAKGVKVLLSLG---GAAGSYSLTSTQDAKQVATYLWNNFLGGHSSSRPLGPAVLDGIDLDIEGGTSQH 158 (298)
Q Consensus 82 ~~~l~~~i~~~q~~g~KVllSiG---G~~~~~~~~~~~~~~~fa~~v~~~f~~g~s~~~~~~~~~~DGiDiD~E~p~~~~ 158 (298)
...+.+.++..|++|++|+|=.= |++. ..+... .++.|. .+++.|+.||-+|+=....+.
T Consensus 72 ~~dl~elv~Ya~~KgVgi~lw~~~~~~~~~-~~~~~~-~~~~f~---------------~~~~~Gv~GvKidF~~~d~Q~ 134 (273)
T PF10566_consen 72 DFDLPELVDYAKEKGVGIWLWYHSETGGNV-ANLEKQ-LDEAFK---------------LYAKWGVKGVKIDFMDRDDQE 134 (273)
T ss_dssp T--HHHHHHHHHHTT-EEEEEEECCHTTBH-HHHHCC-HHHHHH---------------HHHHCTEEEEEEE--SSTSHH
T ss_pred ccCHHHHHHHHHHcCCCEEEEEeCCcchhh-HhHHHH-HHHHHH---------------HHHHcCCCEEeeCcCCCCCHH
Confidence 35788999999999999997542 2210 012222 133343 357899999999998877654
Q ss_pred HHHHHHH
Q 035598 159 WDELARF 165 (298)
Q Consensus 159 ~~~li~~ 165 (298)
..++-++
T Consensus 135 ~v~~y~~ 141 (273)
T PF10566_consen 135 MVNWYED 141 (273)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 4444333
No 128
>PRK02506 dihydroorotate dehydrogenase 1A; Reviewed
Probab=32.33 E-value=2.9e+02 Score=25.68 Aligned_cols=79 Identities=13% Similarity=0.114 Sum_probs=48.4
Q ss_pred cchHHHHHHHHhC--CCeEEEEEeCCCCCCCCCCHHHHHHHHHHHHHhhcCCCCCCcCCCCCc-cCeEeeecCCCCc---
Q 035598 83 TGLSSDIKSCQAK--GVKVLLSLGGAAGSYSLTSTQDAKQVATYLWNNFLGGHSSSRPLGPAV-LDGIDLDIEGGTS--- 156 (298)
Q Consensus 83 ~~l~~~i~~~q~~--g~KVllSiGG~~~~~~~~~~~~~~~fa~~v~~~f~~g~s~~~~~~~~~-~DGiDiD~E~p~~--- 156 (298)
+.+.+.++.+++. ++.|++||-|.+ .++=..+++. +++++ .|.|+|++-.|..
T Consensus 77 ~~~~~~i~~~~~~~~~~pvI~Si~G~~-------~~~~~~~a~~--------------~~~~g~ad~iElN~ScPn~~~~ 135 (310)
T PRK02506 77 DYYLDYVLELQKKGPNKPHFLSVVGLS-------PEETHTILKK--------------IQASDFNGLVELNLSCPNVPGK 135 (310)
T ss_pred HHHHHHHHHHHhhcCCCCEEEEEEeCc-------HHHHHHHHHH--------------HhhcCCCCEEEEECCCCCCCCc
Confidence 3445666665543 588999997743 1222233333 45666 8999999998842
Q ss_pred -------hhHHHHHHHHHhhhhCCCceEEEEcCCC
Q 035598 157 -------QHWDELARFLAGYSQKGKKVYVTAAPQC 184 (298)
Q Consensus 157 -------~~~~~li~~LR~~~~~g~~~llT~Ap~~ 184 (298)
+....+++++|+.. ....++-++|..
T Consensus 136 ~~~g~d~~~~~~i~~~v~~~~--~~Pv~vKlsp~~ 168 (310)
T PRK02506 136 PQIAYDFETTEQILEEVFTYF--TKPLGVKLPPYF 168 (310)
T ss_pred cccccCHHHHHHHHHHHHHhc--CCccEEecCCCC
Confidence 34556777777753 234566677653
No 129
>PRK14510 putative bifunctional 4-alpha-glucanotransferase/glycogen debranching enzyme; Provisional
Probab=32.10 E-value=74 Score=35.64 Aligned_cols=23 Identities=30% Similarity=0.563 Sum_probs=19.8
Q ss_pred CccchHHHHHHHHhCCCeEEEEE
Q 035598 81 GCTGLSSDIKSCQAKGVKVLLSL 103 (298)
Q Consensus 81 ~~~~l~~~i~~~q~~g~KVllSi 103 (298)
...+|++.|+.||++|++|+|=+
T Consensus 245 ~~~efk~lV~~~H~~GI~VILDv 267 (1221)
T PRK14510 245 GEEEFAQAIKEAQSAGIAVILDV 267 (1221)
T ss_pred cHHHHHHHHHHHHHCCCEEEEEE
Confidence 44679999999999999999864
No 130
>COG1979 Uncharacterized oxidoreductases, Fe-dependent alcohol dehydrogenase family [Energy production and conversion]
Probab=31.61 E-value=43 Score=31.94 Aligned_cols=27 Identities=22% Similarity=0.559 Sum_probs=23.8
Q ss_pred CccchHHHHHHHHhCCCeEEEEEeCCC
Q 035598 81 GCTGLSSDIKSCQAKGVKVLLSLGGAA 107 (298)
Q Consensus 81 ~~~~l~~~i~~~q~~g~KVllSiGG~~ 107 (298)
..+.+.+.|+.||+.++-.+|++||.+
T Consensus 70 ~~~Tv~kaV~i~kee~idflLAVGGGS 96 (384)
T COG1979 70 RLETLMKAVEICKEENIDFLLAVGGGS 96 (384)
T ss_pred hHHHHHHHHHHHHHcCceEEEEecCcc
Confidence 356788999999999999999999974
No 131
>PF14587 Glyco_hydr_30_2: O-Glycosyl hydrolase family 30; PDB: 3CLW_B.
Probab=31.57 E-value=64 Score=31.28 Aligned_cols=74 Identities=18% Similarity=0.198 Sum_probs=39.4
Q ss_pred HHHHHHHhCCCeEEEEEeCCC-------CC-------CCCCCHHHHHHHHHHHHHhhcCCCCCCcCCCCCccCeEeeecC
Q 035598 87 SDIKSCQAKGVKVLLSLGGAA-------GS-------YSLTSTQDAKQVATYLWNNFLGGHSSSRPLGPAVLDGIDLDIE 152 (298)
Q Consensus 87 ~~i~~~q~~g~KVllSiGG~~-------~~-------~~~~~~~~~~~fa~~v~~~f~~g~s~~~~~~~~~~DGiDiD~E 152 (298)
-.++++|++|+..++.+-=.. +. ..-..++..+.||+++.+ .++.+.=.||.|++=
T Consensus 108 wfL~~Ak~rGV~~f~aFSNSPP~~MT~NG~~~g~~~~~~NLk~d~y~~FA~YLa~----------Vv~~~~~~GI~f~~I 177 (384)
T PF14587_consen 108 WFLKAAKERGVNIFEAFSNSPPWWMTKNGSASGGDDGSDNLKPDNYDAFADYLAD----------VVKHYKKWGINFDYI 177 (384)
T ss_dssp HHHHHHHHTT---EEEE-SSS-GGGSSSSSSB-S-SSS-SS-TT-HHHHHHHHHH----------HHHHHHCTT--EEEE
T ss_pred HHHHHHHHcCCCeEEEeecCCCHHHhcCCCCCCCCccccccChhHHHHHHHHHHH----------HHHHHHhcCCcccee
Confidence 367888899999998764210 10 001124567899999874 333333457777754
Q ss_pred CCCc------------------hhHHHHHHHHHhhh
Q 035598 153 GGTS------------------QHWDELARFLAGYS 170 (298)
Q Consensus 153 ~p~~------------------~~~~~li~~LR~~~ 170 (298)
.|-+ +....||+.|+..+
T Consensus 178 sP~NEP~~~W~~~~QEG~~~~~~e~a~vI~~L~~~L 213 (384)
T PF14587_consen 178 SPFNEPQWNWAGGSQEGCHFTNEEQADVIRALDKAL 213 (384)
T ss_dssp E--S-TTS-GG--SS-B----HHHHHHHHHHHHHHH
T ss_pred CCcCCCCCCCCCCCcCCCCCCHHHHHHHHHHHHHHH
Confidence 4421 34678999999877
No 132
>COG0296 GlgB 1,4-alpha-glucan branching enzyme [Carbohydrate transport and metabolism]
Probab=30.95 E-value=1.2e+02 Score=31.34 Aligned_cols=24 Identities=13% Similarity=0.277 Sum_probs=20.4
Q ss_pred CCccchHHHHHHHHhCCCeEEEEE
Q 035598 80 NGCTGLSSDIKSCQAKGVKVLLSL 103 (298)
Q Consensus 80 ~~~~~l~~~i~~~q~~g~KVllSi 103 (298)
++.+.|++.|.+||+.|+-|+|=.
T Consensus 211 GtPedfk~fVD~aH~~GIgViLD~ 234 (628)
T COG0296 211 GTPEDFKALVDAAHQAGIGVILDW 234 (628)
T ss_pred CCHHHHHHHHHHHHHcCCEEEEEe
Confidence 355789999999999999999853
No 133
>PLN02495 oxidoreductase, acting on the CH-CH group of donors
Probab=30.65 E-value=2e+02 Score=27.88 Aligned_cols=79 Identities=8% Similarity=0.192 Sum_probs=47.2
Q ss_pred chHHHHHHHHhC--CCeEEEEEeCCCCCCCCCCHHHHHHHHHHHHHhhcCCCCCCcCCCCCccCeEeeecCCCCc-----
Q 035598 84 GLSSDIKSCQAK--GVKVLLSLGGAAGSYSLTSTQDAKQVATYLWNNFLGGHSSSRPLGPAVLDGIDLDIEGGTS----- 156 (298)
Q Consensus 84 ~l~~~i~~~q~~--g~KVllSiGG~~~~~~~~~~~~~~~fa~~v~~~f~~g~s~~~~~~~~~~DGiDiD~E~p~~----- 156 (298)
.+.+.++.++++ .+.|++||.|.. +.++=..++. .+++.+.|+|.|++-.|..
T Consensus 99 ~~l~~i~~~k~~~~~~pvIaSi~~~~------s~~~~~~~a~--------------~~e~~GaD~iELNiSCPn~~~~r~ 158 (385)
T PLN02495 99 TMLAEFKQLKEEYPDRILIASIMEEY------NKDAWEEIIE--------------RVEETGVDALEINFSCPHGMPERK 158 (385)
T ss_pred HHHHHHHHHHhhCCCCcEEEEccCCC------CHHHHHHHHH--------------HHHhcCCCEEEEECCCCCCCCcCc
Confidence 444566666543 579999996521 1222223333 3467889999999988753
Q ss_pred ---------hhHHHHHHHHHhhhhCCCceEEEEcCCC
Q 035598 157 ---------QHWDELARFLAGYSQKGKKVYVTAAPQC 184 (298)
Q Consensus 157 ---------~~~~~li~~LR~~~~~g~~~llT~Ap~~ 184 (298)
+....+++.+|+.. ....++-++|..
T Consensus 159 ~g~~~gq~~e~~~~i~~~Vk~~~--~iPv~vKLsPn~ 193 (385)
T PLN02495 159 MGAAVGQDCDLLEEVCGWINAKA--TVPVWAKMTPNI 193 (385)
T ss_pred cchhhccCHHHHHHHHHHHHHhh--cCceEEEeCCCh
Confidence 12334456666652 245677777764
No 134
>KOG2331 consensus Predicted glycosylhydrolase [General function prediction only]
Probab=29.26 E-value=72 Score=31.41 Aligned_cols=70 Identities=19% Similarity=0.157 Sum_probs=47.4
Q ss_pred HHHhCCCeEEEEE-eCCC-CC----CCCCCHHHHHHHHHHHHHhhcCCCCCCcCCCCCccCeEeeecCCCCc----hhHH
Q 035598 91 SCQAKGVKVLLSL-GGAA-GS----YSLTSTQDAKQVATYLWNNFLGGHSSSRPLGPAVLDGIDLDIEGGTS----QHWD 160 (298)
Q Consensus 91 ~~q~~g~KVllSi-GG~~-~~----~~~~~~~~~~~fa~~v~~~f~~g~s~~~~~~~~~~DGiDiD~E~p~~----~~~~ 160 (298)
.+|..|+|||-.+ --|. |. .-+.+.+..+..|+.+. ++.+-.||||-=|++|.--. .+..
T Consensus 119 ~AHrHGV~vlGTFItEw~eg~~~c~~~La~~es~~~~~e~L~----------~l~~~fgFdGWLiNiEn~i~~~~i~~l~ 188 (526)
T KOG2331|consen 119 TAHRHGVKVLGTFITEWDEGKATCKEFLATEESVEMTVERLV----------ELARFFGFDGWLINIENKIDLAKIPNLI 188 (526)
T ss_pred hhhhcCceeeeeEEEEeccchhHHHHHHccchhHHHHHHHHH----------HHHHHhCCceEEEEeeeccChhhCccHH
Confidence 4577899998554 3454 21 12456666777777665 45566789999999998643 4666
Q ss_pred HHHHHHHhhh
Q 035598 161 ELARFLAGYS 170 (298)
Q Consensus 161 ~li~~LR~~~ 170 (298)
.|+..|.+.+
T Consensus 189 ~F~~~Lt~~~ 198 (526)
T KOG2331|consen 189 QFVSHLTKVL 198 (526)
T ss_pred HHHHHHHHHH
Confidence 7777777665
No 135
>PRK03620 5-dehydro-4-deoxyglucarate dehydratase; Provisional
Probab=29.19 E-value=3.1e+02 Score=25.35 Aligned_cols=113 Identities=14% Similarity=0.180 Sum_probs=60.1
Q ss_pred ccchHHHHHHHHhCCCeEEEEEeCCCCCCCCCCHHHHHHHHHHHHHhhcCCCCCCcCCCCCccCeEeeecCCCCchhHHH
Q 035598 82 CTGLSSDIKSCQAKGVKVLLSLGGAAGSYSLTSTQDAKQVATYLWNNFLGGHSSSRPLGPAVLDGIDLDIEGGTSQHWDE 161 (298)
Q Consensus 82 ~~~l~~~i~~~q~~g~KVllSiGG~~~~~~~~~~~~~~~fa~~v~~~f~~g~s~~~~~~~~~~DGiDiD~E~p~~~~~~~ 161 (298)
...+.+.|+.+-..|++-++-. |.+|.+..-+.++|+++++.+...- .|. -+ -+=|+- . +...
T Consensus 27 ~~~l~~li~~l~~~Gv~Gi~~~-GstGE~~~Lt~eEr~~~~~~~~~~~-~~~---~p----vi~gv~-------~-~t~~ 89 (303)
T PRK03620 27 EAAYREHLEWLAPYGAAALFAA-GGTGEFFSLTPDEYSQVVRAAVETT-AGR---VP----VIAGAG-------G-GTAQ 89 (303)
T ss_pred HHHHHHHHHHHHHcCCCEEEEC-cCCcCcccCCHHHHHHHHHHHHHHh-CCC---Cc----EEEecC-------C-CHHH
Confidence 3567888888888899988754 4455555556677888887665311 110 00 122331 1 2333
Q ss_pred HHHHHHhhhhCCCceEEEEcCCCCCCcc-hhhhhhh--cCCCceEEeeecCCCC
Q 035598 162 LARFLAGYSQKGKKVYVTAAPQCPFPDA-WIGNALK--TGVFDYVWVQFYNNPP 212 (298)
Q Consensus 162 li~~LR~~~~~g~~~llT~Ap~~~~~~~-~~~~~l~--~~~~D~invq~Yn~~~ 212 (298)
-++..|...+.|-+.++.++|....++. .+..++. .+..| +-|+.||.++
T Consensus 90 ~i~~~~~a~~~Gadav~~~pP~y~~~~~~~i~~~f~~va~~~~-lpi~lYn~~g 142 (303)
T PRK03620 90 AIEYAQAAERAGADGILLLPPYLTEAPQEGLAAHVEAVCKSTD-LGVIVYNRDN 142 (303)
T ss_pred HHHHHHHHHHhCCCEEEECCCCCCCCCHHHHHHHHHHHHHhCC-CCEEEEcCCC
Confidence 4444444433476767777765322221 1111111 23345 6788899654
No 136
>PRK09432 metF 5,10-methylenetetrahydrofolate reductase; Provisional
Probab=29.08 E-value=2.6e+02 Score=25.99 Aligned_cols=25 Identities=20% Similarity=0.336 Sum_probs=19.5
Q ss_pred cchHHHHHHHHhCCCeEEEEEeCCC
Q 035598 83 TGLSSDIKSCQAKGVKVLLSLGGAA 107 (298)
Q Consensus 83 ~~l~~~i~~~q~~g~KVllSiGG~~ 107 (298)
.++.+.+..++..|++=+|.|+|-.
T Consensus 97 ~~l~~~L~~~~~~GI~niLaLrGD~ 121 (296)
T PRK09432 97 DELRTIAKDYWNNGIRHIVALRGDL 121 (296)
T ss_pred HHHHHHHHHHHHCCCCEEEEeCCCC
Confidence 4667777778888998888898863
No 137
>cd02067 B12-binding B12 binding domain (B12-BD). This domain binds different cobalamid derivates, like B12 (adenosylcobamide) or methylcobalamin or methyl-Co(III) 5-hydroxybenzimidazolylcobamide, it is found in several enzymes, such as glutamate mutase, methionine synthase and methylmalonyl-CoA mutase. Cobalamin undergoes a conformational change on binding the protein; the dimethylbenzimidazole group, which is coordinated to the cobalt in the free cofactor, moves away from the corrin and is replaced by a histidine contributed by the protein. The sequence Asp-X-His-X-X-Gly, which contains this histidine ligand, is conserved in many cobalamin-binding proteins.
Probab=28.96 E-value=47 Score=25.85 Aligned_cols=61 Identities=21% Similarity=0.192 Sum_probs=38.9
Q ss_pred EEEEeCCCCCCCCcccccCCCCccEEEEceeeecCCCCCccccCCCCCCCCCCCccchHHHHHHHHhCCC-eEEEEEeCC
Q 035598 28 IAIYWGQNGNEGTLKETCSTGNYEYVILSFLATFGNGQTPMINLAGHCDPYSNGCTGLSSDIKSCQAKGV-KVLLSLGGA 106 (298)
Q Consensus 28 vv~Y~g~~~~~~~l~~~~~~~~~thii~AF~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~i~~~q~~g~-KVllSiGG~ 106 (298)
-+.|.+..-....+.+.+.....++|.+++.... ....+.+.++.+|+.+. ++.+-+||.
T Consensus 29 ~V~~lg~~~~~~~l~~~~~~~~pdvV~iS~~~~~-------------------~~~~~~~~i~~l~~~~~~~~~i~vGG~ 89 (119)
T cd02067 29 EVIDLGVDVPPEEIVEAAKEEDADAIGLSGLLTT-------------------HMTLMKEVIEELKEAGLDDIPVLVGGA 89 (119)
T ss_pred EEEECCCCCCHHHHHHHHHHcCCCEEEEeccccc-------------------cHHHHHHHHHHHHHcCCCCCeEEEECC
Confidence 3367664433334566667778888888764221 01345667777777777 888899996
Q ss_pred C
Q 035598 107 A 107 (298)
Q Consensus 107 ~ 107 (298)
.
T Consensus 90 ~ 90 (119)
T cd02067 90 I 90 (119)
T ss_pred C
Confidence 4
No 138
>cd02071 MM_CoA_mut_B12_BD methylmalonyl CoA mutase B12 binding domain. This domain binds to B12 (adenosylcobamide), which initiates the conversion of succinyl CoA and methylmalonyl CoA by forming an adenosyl radical, which then undergoes a rearrangement exchanging a hydrogen atom with a group attached to a neighboring carbon atom. This family is present in both mammals and bacteria. Bacterial members are heterodimers and involved in the fermentation of pyruvate to propionate. Mammalian members are homodimers and responsible for the conversion of odd-chain fatty acids and branched-chain amino acids via propionyl CoA to succinyl CoA for further degradation.
Probab=28.88 E-value=37 Score=26.91 Aligned_cols=62 Identities=23% Similarity=0.200 Sum_probs=39.9
Q ss_pred CcEEEEeCCCCCCCCcccccCCCCccEEEEceeeecCCCCCccccCCCCCCCCCCCccchHHHHHHHHhCCC-eEEEEEe
Q 035598 26 GGIAIYWGQNGNEGTLKETCSTGNYEYVILSFLATFGNGQTPMINLAGHCDPYSNGCTGLSSDIKSCQAKGV-KVLLSLG 104 (298)
Q Consensus 26 ~~vv~Y~g~~~~~~~l~~~~~~~~~thii~AF~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~i~~~q~~g~-KVllSiG 104 (298)
+--+.|-|..-....+.+.......++|.+++.... ..+.+.+.++.+++++. ++.+-+|
T Consensus 27 G~~vi~lG~~vp~e~~~~~a~~~~~d~V~iS~~~~~-------------------~~~~~~~~~~~L~~~~~~~i~i~~G 87 (122)
T cd02071 27 GFEVIYTGLRQTPEEIVEAAIQEDVDVIGLSSLSGG-------------------HMTLFPEVIELLRELGAGDILVVGG 87 (122)
T ss_pred CCEEEECCCCCCHHHHHHHHHHcCCCEEEEcccchh-------------------hHHHHHHHHHHHHhcCCCCCEEEEE
Confidence 344567665433333555556778899999876421 01345677788888766 8888999
Q ss_pred CC
Q 035598 105 GA 106 (298)
Q Consensus 105 G~ 106 (298)
|.
T Consensus 88 G~ 89 (122)
T cd02071 88 GI 89 (122)
T ss_pred CC
Confidence 96
No 139
>TIGR02370 pyl_corrinoid methyltransferase cognate corrinoid proteins, Methanosarcina family. This model describes a subfamily of the B12 binding domain (pfam02607, pfam02310) proteins. Members of the seed alignment include corrinoid proteins specific to four different, mutally non-homologous enzymes of the genus Methanosarcina. Three of the four cognate enzymes (trimethylamine, dimethylamine, and monomethylamine methyltransferases) all have the unusual, ribosomally incorporated amino acid pyrrolysine at the active site. All act in systems in which a methyl group is transferred to the corrinoid protein to create methylcobalamin, from which the methyl group is later transferred elsewhere.
Probab=28.54 E-value=42 Score=29.11 Aligned_cols=25 Identities=24% Similarity=0.323 Sum_probs=19.3
Q ss_pred cchHHHHHHHHhCCC--eEEEEEeCCC
Q 035598 83 TGLSSDIKSCQAKGV--KVLLSLGGAA 107 (298)
Q Consensus 83 ~~l~~~i~~~q~~g~--KVllSiGG~~ 107 (298)
..+.+.|+.+|++|. ++.+-+||..
T Consensus 150 ~~~~~~i~~l~~~~~~~~v~i~vGG~~ 176 (197)
T TIGR02370 150 YGQKDINDKLKEEGYRDSVKFMVGGAP 176 (197)
T ss_pred HHHHHHHHHHHHcCCCCCCEEEEEChh
Confidence 456788889998865 4888999953
No 140
>TIGR02313 HpaI-NOT-DapA 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase. This model represents a subset of the DapA (dihydrodipicolinate synthase) family which has apparently evolved a separate function. The product of DapA, dihydrodipicolinate, results from the non-enzymatic cyclization and dehydration of 6-amino-2,4-dihydroxyhept-2-ene-1,7-dioic acid, which is different from the substrate of this reaction only in the presence of the amino group. In the absence of this amino group, and running the reaction in the opposite direction, the reaction corresponds to the HpaI aldolase component of the 4-hydroxyphenylacetic acid catabolism pathway (see TIGR02311). At present, this variant of DapA is found only in Oceanobacillus iheyensis HTE831 and Thermus thermophilus HB27. In both of these cases, one or more other DapA genes can be found and the one identified by this model is part of an operon for 4-hydroxyphenylacetic acid catabolism.
Probab=28.51 E-value=2.7e+02 Score=25.66 Aligned_cols=114 Identities=17% Similarity=0.197 Sum_probs=62.5
Q ss_pred ccchHHHHHHHHhCCCeEEEEEeCCCCCCCCCCHHHHHHHHHHHHHhhcCCCCCCcCCCCCccCe-EeeecCCCCchhHH
Q 035598 82 CTGLSSDIKSCQAKGVKVLLSLGGAAGSYSLTSTQDAKQVATYLWNNFLGGHSSSRPLGPAVLDG-IDLDIEGGTSQHWD 160 (298)
Q Consensus 82 ~~~l~~~i~~~q~~g~KVllSiGG~~~~~~~~~~~~~~~fa~~v~~~f~~g~s~~~~~~~~~~DG-iDiD~E~p~~~~~~ 160 (298)
...+.+.++.+-..|++-++ ++|.+|....-+.++|.++.+.+.... +| +.+ +=.-...+..
T Consensus 20 ~~~l~~lv~~~~~~Gv~gi~-v~GstGE~~~Ls~~Er~~l~~~~~~~~---------------~g~~pv-i~gv~~~~t~ 82 (294)
T TIGR02313 20 EEALRELIEFQIEGGSHAIS-VGGTSGEPGSLTLEERKQAIENAIDQI---------------AGRIPF-APGTGALNHD 82 (294)
T ss_pred HHHHHHHHHHHHHcCCCEEE-ECccCcccccCCHHHHHHHHHHHHHHh---------------CCCCcE-EEECCcchHH
Confidence 35677888888888998776 556666655556777888887765311 11 111 0001112344
Q ss_pred HHHHHHHhhhhCCCceEEEEcCCCCCCcc-hhhhhhh--cCCCceEEeeecCCCC
Q 035598 161 ELARFLAGYSQKGKKVYVTAAPQCPFPDA-WIGNALK--TGVFDYVWVQFYNNPP 212 (298)
Q Consensus 161 ~li~~LR~~~~~g~~~llT~Ap~~~~~~~-~~~~~l~--~~~~D~invq~Yn~~~ 212 (298)
.-++..|...+.|-+.++.+.|....++. .+-.++. .+..+=+-|+.||.+.
T Consensus 83 ~ai~~a~~A~~~Gad~v~v~pP~y~~~~~~~l~~~f~~ia~a~~~lpv~iYn~P~ 137 (294)
T TIGR02313 83 ETLELTKFAEEAGADAAMVIVPYYNKPNQEALYDHFAEVADAVPDFPIIIYNIPG 137 (294)
T ss_pred HHHHHHHHHHHcCCCEEEEcCccCCCCCHHHHHHHHHHHHHhccCCCEEEEeCch
Confidence 44555555444576777777775422321 1111111 2344226789999874
No 141
>cd00537 MTHFR Methylenetetrahydrofolate reductase (MTHFR). 5,10-Methylenetetrahydrofolate is reduced to 5-methyltetrahydrofolate by methylenetetrahydrofolate reductase, a cytoplasmic, NAD(P)-dependent enzyme. 5-methyltetrahydrofolate is utilized by methionine synthase to convert homocysteine to methionine. The enzymatic mechanism is a ping-pong bi-bi mechanism, in which NAD(P)+ release precedes the binding of methylenetetrahydrofolate and the acceptor is free FAD. The family includes the 5,10-methylenetetrahydrofolate reductase EC:1.7.99.5 from prokaryotes and methylenetetrahydrofolate reductase EC: 1.5.1.20 from eukaryotes. The bacterial enzyme is a homotetramer and NADH is the preferred reductant while the eukaryotic enzyme is a homodimer and NADPH is the preferred reductant. In humans, there are several clinically significant mutations in MTHFR that result in hyperhomocysteinemia, which is a risk factor for the development of cardiovascular disease.
Probab=27.91 E-value=3.7e+02 Score=24.24 Aligned_cols=25 Identities=28% Similarity=0.428 Sum_probs=21.4
Q ss_pred cchHHHHHHHHhCCCeEEEEEeCCC
Q 035598 83 TGLSSDIKSCQAKGVKVLLSLGGAA 107 (298)
Q Consensus 83 ~~l~~~i~~~q~~g~KVllSiGG~~ 107 (298)
.++.+.+..++..|++=+|.|+|..
T Consensus 73 ~~l~~~L~~~~~~Gi~~iL~l~GD~ 97 (274)
T cd00537 73 IELQSILLGAHALGIRNILALRGDP 97 (274)
T ss_pred HHHHHHHHHHHHCCCCeEEEeCCCC
Confidence 5678888889999999999998864
No 142
>TIGR00676 fadh2 5,10-methylenetetrahydrofolate reductase, prokaryotic form. This protein is an FAD-containing flavoprotein.
Probab=26.91 E-value=4.1e+02 Score=24.13 Aligned_cols=25 Identities=16% Similarity=0.409 Sum_probs=20.5
Q ss_pred cchHHHHHHHHhCCCeEEEEEeCCC
Q 035598 83 TGLSSDIKSCQAKGVKVLLSLGGAA 107 (298)
Q Consensus 83 ~~l~~~i~~~q~~g~KVllSiGG~~ 107 (298)
.++.+.+..++..|++=+|.|+|..
T Consensus 73 ~~l~~~L~~~~~~Gi~nvL~l~GD~ 97 (272)
T TIGR00676 73 EEIREILREYRELGIRHILALRGDP 97 (272)
T ss_pred HHHHHHHHHHHHCCCCEEEEeCCCC
Confidence 4677888888888999999998864
No 143
>TIGR03849 arch_ComA phosphosulfolactate synthase. This model finds the ComA (Coenzyme M biosynthesis A) protein, phosphosulfolactate synthase, in methanogenic archaea. The ComABC pathway is one of at least two pathways to the intermediate sulfopyruvate. Coenzyme M occurs rarely and sporadically outside of the archaea, as for expoxide metabolism in Xanthobacter autotrophicus Py2, but candidate phosphosulfolactate synthases from that and other species occur fall below the cutoff and outside the scope of this model. This model deliberately is narrower in scope than pfam02679.
Probab=26.81 E-value=44 Score=30.22 Aligned_cols=162 Identities=19% Similarity=0.251 Sum_probs=87.6
Q ss_pred chHHHHHHHHhCCCeEEEEEeCCCCCCCCCCHHHHHHHHHHHHHhhcCCCCCCcCCCCCccCeEeeecCCC--CchhHHH
Q 035598 84 GLSSDIKSCQAKGVKVLLSLGGAAGSYSLTSTQDAKQVATYLWNNFLGGHSSSRPLGPAVLDGIDLDIEGG--TSQHWDE 161 (298)
Q Consensus 84 ~l~~~i~~~q~~g~KVllSiGG~~~~~~~~~~~~~~~fa~~v~~~f~~g~s~~~~~~~~~~DGiDiD~E~p--~~~~~~~ 161 (298)
.+.+.|..+|+.|++| +.||+=-.. .-.+..|.+++ +-+++.|||.|.|-==.- ..+...+
T Consensus 42 ~l~eki~la~~~~V~v--~~GGtl~E~----~~~q~~~~~Yl-----------~~~k~lGf~~IEiS~G~~~i~~~~~~r 104 (237)
T TIGR03849 42 IVKEKIEMYKDYGIKV--YPGGTLFEI----AHSKGKFDEYL-----------NECDELGFEAVEISDGSMEISLEERCN 104 (237)
T ss_pred HHHHHHHHHHHcCCeE--eCCccHHHH----HHHhhhHHHHH-----------HHHHHcCCCEEEEcCCccCCCHHHHHH
Confidence 4789999999999888 677742111 11123444444 457899999999853221 1356778
Q ss_pred HHHHHHhh-h----hCCCceEEEEcCCCCCCcchhhh---hhhcCCCceEEeeecCCCCC-C-CC-CCChhhHHHHHHHH
Q 035598 162 LARFLAGY-S----QKGKKVYVTAAPQCPFPDAWIGN---ALKTGVFDYVWVQFYNNPPC-Q-YS-SGNIGNLLNAWKQW 230 (298)
Q Consensus 162 li~~LR~~-~----~~g~~~llT~Ap~~~~~~~~~~~---~l~~~~~D~invq~Yn~~~~-~-~~-~~~~~~~~~~~~~~ 230 (298)
+|+.+++. + +.|+++- +..... .++..... .+ ....|+|-|-.=..... + +. .++.. .+.+...
T Consensus 105 lI~~~~~~g~~v~~EvG~K~~-~~~~~~-~~~~~i~~~~~~L-eAGA~~ViiEarEsg~~~Gi~~~~g~~r--~d~v~~i 179 (237)
T TIGR03849 105 LIERAKDNGFMVLSEVGKKSP-EKDSEL-TPDDRIKLINKDL-EAGADYVIIEGRESGKNIGLFDEKGNVK--EDELDVL 179 (237)
T ss_pred HHHHHHhCCCeEeccccccCC-cccccC-CHHHHHHHHHHHH-HCCCcEEEEeehhcCCCcceeCCCCCCc--hHHHHHH
Confidence 88888864 2 2344431 111100 01222221 23 36678887776222100 0 00 01110 1223444
Q ss_pred hcCCCCCeEEEeeecCCC---------C-CCCCCcChHHHHHHHHHhhh
Q 035598 231 TSDIPANKIFLGLPASPA---------A-AGSGFIPTADLISKVLPAIK 269 (298)
Q Consensus 231 ~~g~p~~KlvlG~p~~~~---------~-a~~gy~~~~~l~~~~~~~~~ 269 (298)
+..+|.+||+.=-|.-.. + -+=+.|+|+++.. +++++
T Consensus 180 ~~~l~~eklifEAp~k~~q~~~I~~~G~~VNL~NI~~~evi~--LE~LR 226 (237)
T TIGR03849 180 AENVDINKVIFEAPQKNQQVEFILKFGPDVNLGNIPPEEVIS--LETLR 226 (237)
T ss_pred HhhCChhcEEEECCCHHHHHHHHHHhCCCcccccCCHHHHHH--HHHHh
Confidence 556899999998886431 1 1236789988874 35665
No 144
>PRK10426 alpha-glucosidase; Provisional
Probab=26.73 E-value=1.5e+02 Score=30.76 Aligned_cols=62 Identities=19% Similarity=0.158 Sum_probs=43.2
Q ss_pred CccchHHHHHHHHhCCCeEEEEEeCC-C--------------------C-------------CCCCCCHHHHHHHHHHHH
Q 035598 81 GCTGLSSDIKSCQAKGVKVLLSLGGA-A--------------------G-------------SYSLTSTQDAKQVATYLW 126 (298)
Q Consensus 81 ~~~~l~~~i~~~q~~g~KVllSiGG~-~--------------------~-------------~~~~~~~~~~~~fa~~v~ 126 (298)
.+++..+.|+.+|++|+|+++.+==. . + -..|.+++.|+-|.+.+.
T Consensus 267 ~FPdp~~mi~~L~~~G~k~v~~i~P~v~~~~~~y~e~~~~gy~vk~~~g~~~~~~~~~~~~~~~Dftnp~ar~Ww~~~~~ 346 (635)
T PRK10426 267 RYPQLDSRIKQLNEEGIQFLGYINPYLASDGDLCEEAAEKGYLAKDADGGDYLVEFGEFYAGVVDLTNPEAYEWFKEVIK 346 (635)
T ss_pred hCCCHHHHHHHHHHCCCEEEEEEcCccCCCCHHHHHHHHCCcEEECCCCCEEEeEecCCCceeecCCCHHHHHHHHHHHH
Confidence 45677889999999999999887421 0 0 012556777877777653
Q ss_pred HhhcCCCCCCcCCCCCccCeEeeecC
Q 035598 127 NNFLGGHSSSRPLGPAVLDGIDLDIE 152 (298)
Q Consensus 127 ~~f~~g~s~~~~~~~~~~DGiDiD~E 152 (298)
+.+.+.|+||+=.|+-
T Consensus 347 ----------~~~~~~Gvdg~w~D~~ 362 (635)
T PRK10426 347 ----------KNMIGLGCSGWMADFG 362 (635)
T ss_pred ----------HHHhhcCCCEEeeeCC
Confidence 4567889999977753
No 145
>PRK08091 ribulose-phosphate 3-epimerase; Validated
Probab=26.43 E-value=2.7e+02 Score=24.91 Aligned_cols=63 Identities=16% Similarity=0.175 Sum_probs=45.9
Q ss_pred CCCccCeEeeecCCCCchhHHHHHHHHHhhhhCCC--ceEEEEcCCCCCCcchhhhhhhcCCCceEEeeecCCC
Q 035598 140 GPAVLDGIDLDIEGGTSQHWDELARFLAGYSQKGK--KVYVTAAPQCPFPDAWIGNALKTGVFDYVWVQFYNNP 211 (298)
Q Consensus 140 ~~~~~DGiDiD~E~p~~~~~~~li~~LR~~~~~g~--~~llT~Ap~~~~~~~~~~~~l~~~~~D~invq~Yn~~ 211 (298)
.+.|-|-|=|.+|.. .+..++++.+|+. |. +.-|+.-|..|. ..+..++ +.+|+|-||.=|.+
T Consensus 88 ~~aGad~It~H~Ea~--~~~~~~l~~Ik~~---g~~~kaGlalnP~Tp~--~~i~~~l--~~vD~VLiMtV~PG 152 (228)
T PRK08091 88 VAAGADIVTLQVEQT--HDLALTIEWLAKQ---KTTVLIGLCLCPETPI--SLLEPYL--DQIDLIQILTLDPR 152 (228)
T ss_pred HHhCCCEEEEcccCc--ccHHHHHHHHHHC---CCCceEEEEECCCCCH--HHHHHHH--hhcCEEEEEEECCC
Confidence 467899999999953 3456788888886 54 556777787653 2344455 68999999998875
No 146
>PF01207 Dus: Dihydrouridine synthase (Dus); InterPro: IPR001269 Members of this family catalyse the reduction of the 5,6-double bond of a uridine residue on tRNA. Dihydrouridine modification of tRNA is widely observed in prokaryotes and eukaryotes, and also in some archae. Most dihydrouridines are found in the D loop of t-RNAs. The role of dihydrouridine in tRNA is currently unknown, but may increase conformational flexibility of the tRNA. It is likely that different family members have different substrate specificities, which may overlap. Dus 1 (P53759 from SWISSPROT) from Saccharomyces cerevisiae (Baker's yeast) acts on pre-tRNA-Phe, while Dus 2 (P53720 from SWISSPROT) acts on pre-tRNA-Tyr and pre-tRNA-Leu. Dus 1 is active as a single subunit, requiring NADPH or NADH, and is stimulated by the presence of FAD []. Some family members may be targeted to the mitochondria and even have a role in mitochondria []. ; GO: 0017150 tRNA dihydrouridine synthase activity, 0050660 flavin adenine dinucleotide binding, 0008033 tRNA processing, 0055114 oxidation-reduction process; PDB: 1VHN_A 3B0P_A 3B0V_D 3B0U_Y.
Probab=26.35 E-value=70 Score=29.84 Aligned_cols=87 Identities=16% Similarity=0.175 Sum_probs=43.5
Q ss_pred CCeEEEEEeCCCCCCCCCCHHHHHHHHHHHHHhhcCCCCCCcCCCCCccCeEeeecCCCCc---------------hhHH
Q 035598 96 GVKVLLSLGGAAGSYSLTSTQDAKQVATYLWNNFLGGHSSSRPLGPAVLDGIDLDIEGGTS---------------QHWD 160 (298)
Q Consensus 96 g~KVllSiGG~~~~~~~~~~~~~~~fa~~v~~~f~~g~s~~~~~~~~~~DGiDiD~E~p~~---------------~~~~ 160 (298)
..++.+=|+|. +.+.|+..+ +.+.+.++|||||+.-.|.+ +-..
T Consensus 53 ~~p~~~Ql~g~----------~~~~~~~aa-----------~~~~~~~~~~IDlN~GCP~~~v~~~g~Ga~Ll~~p~~~~ 111 (309)
T PF01207_consen 53 ERPLIVQLFGN----------DPEDLAEAA-----------EIVAELGFDGIDLNMGCPAPKVTKGGAGAALLKDPDLLA 111 (309)
T ss_dssp T-TEEEEEE-S-----------HHHHHHHH-----------HHHCCTT-SEEEEEE---SHHHHHCT-GGGGGC-HHHHH
T ss_pred ccceeEEEeec----------cHHHHHHHH-----------HhhhccCCcEEeccCCCCHHHHhcCCcChhhhcChHHhh
Confidence 46788888884 233444443 34567899999999999963 3355
Q ss_pred HHHHHHHhhhhCCCceEEEEcCCCCCCcc---h--hhhhhhcCCCceEEeee
Q 035598 161 ELARFLAGYSQKGKKVYVTAAPQCPFPDA---W--IGNALKTGVFDYVWVQF 207 (298)
Q Consensus 161 ~li~~LR~~~~~g~~~llT~Ap~~~~~~~---~--~~~~l~~~~~D~invq~ 207 (298)
.+++++|+.. + .-+|+=....+.+. . +-..+....+|+|.|..
T Consensus 112 ~iv~~~~~~~--~--~pvsvKiR~g~~~~~~~~~~~~~~l~~~G~~~i~vH~ 159 (309)
T PF01207_consen 112 EIVKAVRKAV--P--IPVSVKIRLGWDDSPEETIEFARILEDAGVSAITVHG 159 (309)
T ss_dssp HHHHHHHHH---S--SEEEEEEESECT--CHHHHHHHHHHHHTT--EEEEEC
T ss_pred HHHHhhhccc--c--cceEEecccccccchhHHHHHHHHhhhcccceEEEec
Confidence 6777777763 2 23554433322211 1 11223345599998864
No 147
>cd00953 KDG_aldolase KDG (2-keto-3-deoxygluconate) aldolases found in archaea. This subfamily of enzymes is adapted for high thermostability and shows specificity for non-phosphorylated substrates. The enzyme catalyses the reversible aldol cleavage of 2-keto-3-dexoygluconate to pyruvate and glyceraldehyde, the third step of a modified non-phosphorylated Entner-Doudoroff pathway of glucose oxidation. KDG aldolase shows no significant sequence similarity to microbial 2-keto-3-deoxyphosphogluconate (KDPG) aldolases, and the enzyme shows no activity with glyceraldehyde 3-phosphate as substrate. The enzyme is a tetramer and a member of the DHDPS family of Schiff-base-dependent class I aldolases.
Probab=26.29 E-value=4.7e+02 Score=23.81 Aligned_cols=108 Identities=14% Similarity=0.122 Sum_probs=60.4
Q ss_pred cchHHHHHHHHhCCCeEEEEEeCCCCCCCCCCHHHHHHHHHHHHHhhcCCCCCCcCCCCCccCeEeeecCCCCchhHHHH
Q 035598 83 TGLSSDIKSCQAKGVKVLLSLGGAAGSYSLTSTQDAKQVATYLWNNFLGGHSSSRPLGPAVLDGIDLDIEGGTSQHWDEL 162 (298)
Q Consensus 83 ~~l~~~i~~~q~~g~KVllSiGG~~~~~~~~~~~~~~~fa~~v~~~f~~g~s~~~~~~~~~~DGiDiD~E~p~~~~~~~l 162 (298)
..+.+.++.+.++|++-++-.|..+. ...-+.++|+++++.+.. ..+ +| .=.-+..+...-
T Consensus 20 ~~~~~li~~l~~~Gv~Gl~~~GstGE-~~~Lt~eEr~~l~~~~~~----------~~~-----~v---i~gvg~~~~~~a 80 (279)
T cd00953 20 EKFKKHCENLISKGIDYVFVAGTTGL-GPSLSFQEKLELLKAYSD----------ITD-----KV---IFQVGSLNLEES 80 (279)
T ss_pred HHHHHHHHHHHHcCCcEEEEcccCCC-cccCCHHHHHHHHHHHHH----------HcC-----CE---EEEeCcCCHHHH
Confidence 56778888888899999877666543 334456677777776642 111 22 111112344555
Q ss_pred HHHHHhhhhCCCceEEEEcCCC-CCC-cchhhhhhh--cCCCceEEeeecCCCC
Q 035598 163 ARFLAGYSQKGKKVYVTAAPQC-PFP-DAWIGNALK--TGVFDYVWVQFYNNPP 212 (298)
Q Consensus 163 i~~LR~~~~~g~~~llT~Ap~~-~~~-~~~~~~~l~--~~~~D~invq~Yn~~~ 212 (298)
++..|...+.|-+.++.+.|.. ..+ +..+-.++. .+ | +-++.||.+.
T Consensus 81 i~~a~~a~~~Gad~v~v~~P~y~~~~~~~~i~~yf~~v~~--~-lpv~iYn~P~ 131 (279)
T cd00953 81 IELARAAKSFGIYAIASLPPYYFPGIPEEWLIKYFTDISS--P-YPTFIYNYPK 131 (279)
T ss_pred HHHHHHHHHcCCCEEEEeCCcCCCCCCHHHHHHHHHHHHh--c-CCEEEEeCcc
Confidence 5555554445767777777753 212 211111111 13 4 6789999874
No 148
>PRK13523 NADPH dehydrogenase NamA; Provisional
Probab=26.04 E-value=1.5e+02 Score=28.12 Aligned_cols=22 Identities=23% Similarity=0.333 Sum_probs=17.5
Q ss_pred ccchHHHHHHHHhCCCeEEEEE
Q 035598 82 CTGLSSDIKSCQAKGVKVLLSL 103 (298)
Q Consensus 82 ~~~l~~~i~~~q~~g~KVllSi 103 (298)
.+.+.+..+.+|+.|-|+++-|
T Consensus 80 i~~~r~l~d~vh~~G~~i~~QL 101 (337)
T PRK13523 80 IEGLHKLVTFIHDHGAKAAIQL 101 (337)
T ss_pred HHHHHHHHHHHHhcCCEEEEEc
Confidence 3456677788999999998877
No 149
>PF14488 DUF4434: Domain of unknown function (DUF4434)
Probab=25.65 E-value=4.1e+02 Score=22.38 Aligned_cols=113 Identities=18% Similarity=0.166 Sum_probs=62.8
Q ss_pred CCCCccEEEEceeeecCCCCCccccCCCCCCCCCCCccchHHHHHHHHhCCCeEEEEEeCCCCCCCCCC----HHHHHHH
Q 035598 46 STGNYEYVILSFLATFGNGQTPMINLAGHCDPYSNGCTGLSSDIKSCQAKGVKVLLSLGGAAGSYSLTS----TQDAKQV 121 (298)
Q Consensus 46 ~~~~~thii~AF~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~i~~~q~~g~KVllSiGG~~~~~~~~~----~~~~~~f 121 (298)
..-.+++||+-.....+...+|.--....|. ......+...++.+++.|+||.++++-...-..-.+ .+.++..
T Consensus 30 ~~~GidtlIlq~~~~~~~~~yps~~~~~~~~--~~~~d~l~~~L~~A~~~Gmkv~~Gl~~~~~~w~~~~~~~~~~~~~~v 107 (166)
T PF14488_consen 30 KAIGIDTLILQWTGYGGFAFYPSKLSPGGFY--MPPVDLLEMILDAADKYGMKVFVGLYFDPDYWDQGDLDWEAERNKQV 107 (166)
T ss_pred HHcCCcEEEEEEeecCCcccCCccccCcccc--CCcccHHHHHHHHHHHcCCEEEEeCCCCchhhhccCHHHHHHHHHHH
Confidence 4557899888654432221122111111111 112345677888999999999999986532111022 1224567
Q ss_pred HHHHHHhhcCCCCCCcCCCCCccCeEeeecCCCCc-----hhHHHHHHHHHhh
Q 035598 122 ATYLWNNFLGGHSSSRPLGPAVLDGIDLDIEGGTS-----QHWDELARFLAGY 169 (298)
Q Consensus 122 a~~v~~~f~~g~s~~~~~~~~~~DGiDiD~E~p~~-----~~~~~li~~LR~~ 169 (298)
++.++..|. ..-.|.|-=|-.|-... +-+..|.+.|++.
T Consensus 108 ~~el~~~yg---------~h~sf~GWYip~E~~~~~~~~~~~~~~l~~~lk~~ 151 (166)
T PF14488_consen 108 ADELWQRYG---------HHPSFYGWYIPYEIDDYNWNAPERFALLGKYLKQI 151 (166)
T ss_pred HHHHHHHHc---------CCCCCceEEEecccCCcccchHHHHHHHHHHHHHh
Confidence 777876662 22268898888886542 3344555555554
No 150
>PF13204 DUF4038: Protein of unknown function (DUF4038); PDB: 3KZS_D.
Probab=25.29 E-value=5.4e+02 Score=23.64 Aligned_cols=171 Identities=16% Similarity=0.157 Sum_probs=78.0
Q ss_pred ccchHHHHHHHHhCCCeEEE--EEe------CCCCCCCCCCHHHHHHHHHHHHHhhcCCCCCCcCCCCCccCeEeeecCC
Q 035598 82 CTGLSSDIKSCQAKGVKVLL--SLG------GAAGSYSLTSTQDAKQVATYLWNNFLGGHSSSRPLGPAVLDGIDLDIEG 153 (298)
Q Consensus 82 ~~~l~~~i~~~q~~g~KVll--SiG------G~~~~~~~~~~~~~~~fa~~v~~~f~~g~s~~~~~~~~~~DGiDiD~E~ 153 (298)
+..+.+.|+.+.++|+-+.| .-| .|+.....-++++.+.+.+.|+.-|. .- +.++ =+=|=|..-..
T Consensus 87 F~~~d~~i~~a~~~Gi~~~lv~~wg~~~~~~~Wg~~~~~m~~e~~~~Y~~yv~~Ry~-~~--~Nvi---W~l~gd~~~~~ 160 (289)
T PF13204_consen 87 FDHLDRRIEKANELGIEAALVPFWGCPYVPGTWGFGPNIMPPENAERYGRYVVARYG-AY--PNVI---WILGGDYFDTE 160 (289)
T ss_dssp HHHHHHHHHHHHHTT-EEEEESS-HHHHH-------TTSS-HHHHHHHHHHHHHHHT-T---SSEE---EEEESSS--TT
T ss_pred HHHHHHHHHHHHHCCCeEEEEEEECCccccccccccccCCCHHHHHHHHHHHHHHHh-cC--CCCE---EEecCccCCCC
Confidence 34566788889999997753 232 23322234457788899999986551 00 0111 01111111122
Q ss_pred CCchhHHHHHHHHHhhhhCCCceEEEEcCCCCCCcchhhhhh-hcCCCceEEeeecCCCCCCCCCCChhhHHHHHHHHhc
Q 035598 154 GTSQHWDELARFLAGYSQKGKKVYVTAAPQCPFPDAWIGNAL-KTGVFDYVWVQFYNNPPCQYSSGNIGNLLNAWKQWTS 232 (298)
Q Consensus 154 p~~~~~~~li~~LR~~~~~g~~~llT~Ap~~~~~~~~~~~~l-~~~~~D~invq~Yn~~~~~~~~~~~~~~~~~~~~~~~ 232 (298)
...+.+.++++.||+.- +.. ++|+=|... ......+ +..-+||..+|..... ........ ...-..|.
T Consensus 161 ~~~~~w~~~~~~i~~~d--p~~-L~T~H~~~~---~~~~~~~~~~~Wldf~~~Qsgh~~---~~~~~~~~-~~~~~~~~- 229 (289)
T PF13204_consen 161 KTRADWDAMARGIKEND--PYQ-LITIHPCGR---TSSPDWFHDEPWLDFNMYQSGHNR---YDQDNWYY-LPEEFDYR- 229 (289)
T ss_dssp SSHHHHHHHHHHHHHH----SS--EEEEE-BT---EBTHHHHTT-TT--SEEEB--S-----TT--THHH-H--HHHHT-
T ss_pred cCHHHHHHHHHHHHhhC--CCC-cEEEeCCCC---CCcchhhcCCCcceEEEeecCCCc---ccchHHHH-Hhhhhhhh-
Confidence 23468899999999972 334 999877542 1122222 2456999999986432 11111111 10013343
Q ss_pred CCCCCeEEEeeecCCCCCC-----CCCcChHHHHHHHHHhhh
Q 035598 233 DIPANKIFLGLPASPAAAG-----SGFIPTADLISKVLPAIK 269 (298)
Q Consensus 233 g~p~~KlvlG~p~~~~~a~-----~gy~~~~~l~~~~~~~~~ 269 (298)
..|..-++.|=|.|.+... .|+.+++++.+.....+-
T Consensus 230 ~~p~KPvin~Ep~YEg~~~~~~~~~~~~~~~dvrr~aw~svl 271 (289)
T PF13204_consen 230 RKPVKPVINGEPCYEGIPYSRWGYNGRFSAEDVRRRAWWSVL 271 (289)
T ss_dssp SSS---EEESS---BT-BTTSS-TS-B--HHHHHHHHHHHHH
T ss_pred hCCCCCEEcCcccccCCCCCcCcccCCCCHHHHHHHHHHHHh
Confidence 3578889999999965321 247788888877665554
No 151
>TIGR00674 dapA dihydrodipicolinate synthase. Dihydrodipicolinate synthase is a homotetrameric enzyme of lysine biosynthesis. E. coli has several paralogs closely related to dihydrodipicoline synthase (DapA), as well as the more distant N-acetylneuraminate lyase. In Pyrococcus horikoshii, the bidirectional best hit with E. coli is to an uncharacterized paralog of DapA, not DapA itself, and it is omitted from the seed. The putative members from the Chlamydias (pathogens with a parasitic metabolism) are easily the most divergent members of the multiple alignment.
Probab=25.16 E-value=4.5e+02 Score=23.88 Aligned_cols=114 Identities=18% Similarity=0.257 Sum_probs=60.6
Q ss_pred ccchHHHHHHHHhCCCeEEEEEeCCCCCCCCCCHHHHHHHHHHHHHhhcCCCCCCcCCCCCccCeEeeecCCCCchhHHH
Q 035598 82 CTGLSSDIKSCQAKGVKVLLSLGGAAGSYSLTSTQDAKQVATYLWNNFLGGHSSSRPLGPAVLDGIDLDIEGGTSQHWDE 161 (298)
Q Consensus 82 ~~~l~~~i~~~q~~g~KVllSiGG~~~~~~~~~~~~~~~fa~~v~~~f~~g~s~~~~~~~~~~DGiDiD~E~p~~~~~~~ 161 (298)
.+.+.+.++.+-+.|++=++ +.|.+|....-+.++|+++.+.+.... .|. - --+=|+ ...+...
T Consensus 18 ~~~~~~~i~~l~~~Gv~Gi~-~~GstGE~~~Ls~~Er~~~~~~~~~~~-~~~---~----~vi~gv-------~~~s~~~ 81 (285)
T TIGR00674 18 FAALEKLIDFQIENGTDAIV-VVGTTGESPTLSHEEHKKVIEFVVDLV-NGR---V----PVIAGT-------GSNATEE 81 (285)
T ss_pred HHHHHHHHHHHHHcCCCEEE-ECccCcccccCCHHHHHHHHHHHHHHh-CCC---C----eEEEeC-------CCccHHH
Confidence 35678888888788998777 455555555556677887777665311 000 0 001111 1223444
Q ss_pred HHHHHHhhhhCCCceEEEEcCCCCCCc-chhhhhhh--cCCCceEEeeecCCCC
Q 035598 162 LARFLAGYSQKGKKVYVTAAPQCPFPD-AWIGNALK--TGVFDYVWVQFYNNPP 212 (298)
Q Consensus 162 li~~LR~~~~~g~~~llT~Ap~~~~~~-~~~~~~l~--~~~~D~invq~Yn~~~ 212 (298)
.++..|...+.|-+.++.+.|....++ ..+-.++. .+..| +-|+.||.+.
T Consensus 82 ~i~~a~~a~~~Gad~v~v~pP~y~~~~~~~i~~~~~~i~~~~~-~pi~lYn~P~ 134 (285)
T TIGR00674 82 AISLTKFAEDVGADGFLVVTPYYNKPTQEGLYQHFKAIAEEVD-LPIILYNVPS 134 (285)
T ss_pred HHHHHHHHHHcCCCEEEEcCCcCCCCCHHHHHHHHHHHHhcCC-CCEEEEECcH
Confidence 555555444457676777766542222 11111111 23445 6788999874
No 152
>cd06416 GH25_Lys1-like Lys-1 is a lysozyme encoded by the Caenorhabditis elegans lys-1 gene. This gene is one of a several lysozyme genes upregulated upon infection by the Gram-negative bacterial pathogen Serratia marcescens. Lys-1 contains a glycosyl hydrolase family 25 (GH25) catalytic domain. This family also includes Lys-5 from Caenorhabditis elegans.
Probab=25.14 E-value=1.7e+02 Score=24.93 Aligned_cols=17 Identities=24% Similarity=0.427 Sum_probs=15.0
Q ss_pred cchHHHHHHHHhCCCeE
Q 035598 83 TGLSSDIKSCQAKGVKV 99 (298)
Q Consensus 83 ~~l~~~i~~~q~~g~KV 99 (298)
+.+.+.++.|++.|+++
T Consensus 39 ~~f~~n~~~A~~aGl~~ 55 (196)
T cd06416 39 PNSVTNIKNARAAGLST 55 (196)
T ss_pred hHHHHHHHHHHHcCCcc
Confidence 56789999999999988
No 153
>cd02070 corrinoid_protein_B12-BD B12 binding domain of corrinoid proteins. A family of small methanogenic corrinoid proteins that bind methyl-Co(III) 5-hydroxybenzimidazolylcobamide as a cofactor. They play a role on the methanogenesis from trimethylamine, dimethylamine or monomethylamine, which is initiated by a series of corrinoid-dependent methyltransferases.
Probab=24.89 E-value=53 Score=28.47 Aligned_cols=25 Identities=32% Similarity=0.569 Sum_probs=19.8
Q ss_pred cchHHHHHHHHhCCC--eEEEEEeCCC
Q 035598 83 TGLSSDIKSCQAKGV--KVLLSLGGAA 107 (298)
Q Consensus 83 ~~l~~~i~~~q~~g~--KVllSiGG~~ 107 (298)
..+.+.|+.+|+.+. ++-+-+||..
T Consensus 148 ~~~~~~i~~lr~~~~~~~~~i~vGG~~ 174 (201)
T cd02070 148 GGMKEVIEALKEAGLRDKVKVMVGGAP 174 (201)
T ss_pred HHHHHHHHHHHHCCCCcCCeEEEECCc
Confidence 456788888888876 8888899964
No 154
>cd02933 OYE_like_FMN Old yellow enzyme (OYE)-like FMN binding domain. OYE was the first flavin-dependent enzyme identified, however its true physiological role remains elusive to this day. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Members of OYE family include 12-oxophytodienoate reductase, pentaerythritol tetranitrate reductase, morphinone reductase, and related enzymes.
Probab=24.50 E-value=2.3e+02 Score=26.76 Aligned_cols=22 Identities=32% Similarity=0.466 Sum_probs=17.3
Q ss_pred ccchHHHHHHHHhCCCeEEEEE
Q 035598 82 CTGLSSDIKSCQAKGVKVLLSL 103 (298)
Q Consensus 82 ~~~l~~~i~~~q~~g~KVllSi 103 (298)
.+.+.+....+|+.|-|+++=|
T Consensus 76 i~~lr~la~~vh~~ga~~~~QL 97 (338)
T cd02933 76 VEGWKKVTDAVHAKGGKIFLQL 97 (338)
T ss_pred HHHHHHHHHHHHhcCCeEEEEc
Confidence 3566777788999999988776
No 155
>COG0826 Collagenase and related proteases [Posttranslational modification, protein turnover, chaperones]
Probab=24.36 E-value=80 Score=30.16 Aligned_cols=75 Identities=15% Similarity=0.227 Sum_probs=45.4
Q ss_pred cchHHHHHHHHhCCCeEEEEEeCCCCCCCCCCHHHHHHHHHHHHHhhcCCCCCCcCCCCCccCeEeeecCCCCchhHHHH
Q 035598 83 TGLSSDIKSCQAKGVKVLLSLGGAAGSYSLTSTQDAKQVATYLWNNFLGGHSSSRPLGPAVLDGIDLDIEGGTSQHWDEL 162 (298)
Q Consensus 83 ~~l~~~i~~~q~~g~KVllSiGG~~~~~~~~~~~~~~~fa~~v~~~f~~g~s~~~~~~~~~~DGiDiD~E~p~~~~~~~l 162 (298)
.++.+.|+.+|++|+|+.+.+-..- .....+.+.+.+ +.+.+.|.|+|-+- .| -+
T Consensus 49 ~~l~e~i~~ah~~gkk~~V~~N~~~------~~~~~~~~~~~l-----------~~l~e~GvDaviv~--Dp------g~ 103 (347)
T COG0826 49 EDLAEAVELAHSAGKKVYVAVNTLL------HNDELETLERYL-----------DRLVELGVDAVIVA--DP------GL 103 (347)
T ss_pred HHHHHHHHHHHHcCCeEEEEecccc------ccchhhHHHHHH-----------HHHHHcCCCEEEEc--CH------HH
Confidence 5689999999999999999976531 112222333433 34568889988652 11 24
Q ss_pred HHHHHhhhhCCCceEEEEcCCCC
Q 035598 163 ARFLAGYSQKGKKVYVTAAPQCP 185 (298)
Q Consensus 163 i~~LR~~~~~g~~~llT~Ap~~~ 185 (298)
+..+|+. +|++-+.+.+|+.
T Consensus 104 i~l~~e~---~p~l~ih~S~q~~ 123 (347)
T COG0826 104 IMLARER---GPDLPIHVSTQAN 123 (347)
T ss_pred HHHHHHh---CCCCcEEEeeeEe
Confidence 5555554 3445555555543
No 156
>COG0572 Udk Uridine kinase [Nucleotide transport and metabolism]
Probab=24.25 E-value=2.3e+02 Score=25.32 Aligned_cols=67 Identities=13% Similarity=0.142 Sum_probs=40.9
Q ss_pred CCeEEEEEeCCCCCCCCCCHHHHHHHHHHHHHhhcCCCCC--------CcCCCCCccC-eEeeecCCCCchhHHHHHHHH
Q 035598 96 GVKVLLSLGGAAGSYSLTSTQDAKQVATYLWNNFLGGHSS--------SRPLGPAVLD-GIDLDIEGGTSQHWDELARFL 166 (298)
Q Consensus 96 g~KVllSiGG~~~~~~~~~~~~~~~fa~~v~~~f~~g~s~--------~~~~~~~~~D-GiDiD~E~p~~~~~~~li~~L 166 (298)
.+.++++|+|.+++.. .+|++.+.+.|. ++.. .+-..+.-++ -...||++|..-++..|.+.|
T Consensus 6 ~~~iiIgIaG~SgSGK-------TTva~~l~~~~~-~~~~~~I~~D~YYk~~~~~~~~~~~~~n~d~p~A~D~dLl~~~L 77 (218)
T COG0572 6 EKVIIIGIAGGSGSGK-------TTVAKELSEQLG-VEKVVVISLDDYYKDQSHLPFEERNKINYDHPEAFDLDLLIEHL 77 (218)
T ss_pred CceEEEEEeCCCCCCH-------HHHHHHHHHHhC-cCcceEeeccccccchhhcCHhhcCCcCccChhhhcHHHHHHHH
Confidence 3458999999876532 467777766662 2211 0111122233 445678888877888888888
Q ss_pred Hhhh
Q 035598 167 AGYS 170 (298)
Q Consensus 167 R~~~ 170 (298)
..++
T Consensus 78 ~~L~ 81 (218)
T COG0572 78 KDLK 81 (218)
T ss_pred HHHH
Confidence 8875
No 157
>smart00812 Alpha_L_fucos Alpha-L-fucosidase. O-Glycosyl hydrolases (EC 3.2.1.-) are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site PUBMED:. Because the fold of proteins is better conserved than their sequences, some of the families can be grouped in 'clans'. Family 29 encompasses alpha-L-fucosidases, which is a lysosomal enzyme responsible for hydrolyzing the alpha-1,6-linked fucose joined to the reducing-end N-acetylglucosamine of the carbohydrate moieties of glycoproteins. Deficiency of alpha-L-fucosidase results in the lysosomal storage disease fucosidosis.
Probab=21.55 E-value=4.2e+02 Score=25.61 Aligned_cols=81 Identities=10% Similarity=-0.038 Sum_probs=49.5
Q ss_pred cchHHHHHHHHhCCCeEEEEEeCCCCC---CC----CC-CHH---HHHHHHHHHHHhhcCCCCCCcCCCCCccCeEeeec
Q 035598 83 TGLSSDIKSCQAKGVKVLLSLGGAAGS---YS----LT-STQ---DAKQVATYLWNNFLGGHSSSRPLGPAVLDGIDLDI 151 (298)
Q Consensus 83 ~~l~~~i~~~q~~g~KVllSiGG~~~~---~~----~~-~~~---~~~~fa~~v~~~f~~g~s~~~~~~~~~~DGiDiD~ 151 (298)
.-+.+..++||++|+|+-+....+... +. .. ... .-.+|.+...+ .+.+++.+|+-|.+=+|+
T Consensus 128 Div~el~~A~rk~Glk~G~Y~S~~DW~~p~y~~~~~~~~~~~~~~~~~~y~~~~~~------Ql~ELit~Ygpd~lWfD~ 201 (384)
T smart00812 128 DLVGELADAVRKRGLKFGLYHSLFDWFNPLYAGPTSSDEDPDNWPRFQEFVDDWLP------QLRELVTRYKPDLLWFDG 201 (384)
T ss_pred chHHHHHHHHHHcCCeEEEEcCHHHhCCCccccccccccccccchhHHHHHHHHHH------HHHHHHhcCCCceEEEeC
Confidence 456777889999999999988764321 11 00 111 11233311111 224788999999998887
Q ss_pred CCCCch---hHHHHHHHHHhh
Q 035598 152 EGGTSQ---HWDELARFLAGY 169 (298)
Q Consensus 152 E~p~~~---~~~~li~~LR~~ 169 (298)
..+... ....|++.+|++
T Consensus 202 ~~~~~~~~~~~~~l~~~~~~~ 222 (384)
T smart00812 202 GWEAPDDYWRSKEFLAWLYNL 222 (384)
T ss_pred CCCCccchhcHHHHHHHHHHh
Confidence 765432 356788888876
No 158
>PRK10933 trehalose-6-phosphate hydrolase; Provisional
Probab=21.45 E-value=1.2e+02 Score=30.72 Aligned_cols=60 Identities=10% Similarity=0.204 Sum_probs=35.7
Q ss_pred cccCCCCccEEEEceeeecC--CCCCccccCCCCCCCCCCCccchHHHHHHHHhCCCeEEEEE
Q 035598 43 ETCSTGNYEYVILSFLATFG--NGQTPMINLAGHCDPYSNGCTGLSSDIKSCQAKGVKVLLSL 103 (298)
Q Consensus 43 ~~~~~~~~thii~AF~~~~~--~g~~~~~~~~~~~~~~~~~~~~l~~~i~~~q~~g~KVllSi 103 (298)
+++..-.+|+|-+.=+...+ +.++-..++.. .+|.-++...|.+.|++||++|+||++=+
T Consensus 40 dyl~~lGv~~i~l~P~~~~~~~~~gY~~~d~~~-id~~~Gt~~d~~~lv~~~h~~gi~vilD~ 101 (551)
T PRK10933 40 DYLQKLGVDAIWLTPFYVSPQVDNGYDVANYTA-IDPTYGTLDDFDELVAQAKSRGIRIILDM 101 (551)
T ss_pred HHHHhCCCCEEEECCCCCCCCCCCCCCcccCCC-cCcccCCHHHHHHHHHHHHHCCCEEEEEE
Confidence 34556688998775332221 11221122211 12333456789999999999999999865
No 159
>PRK14511 maltooligosyl trehalose synthase; Provisional
Probab=21.35 E-value=1.9e+02 Score=31.29 Aligned_cols=63 Identities=21% Similarity=0.238 Sum_probs=38.3
Q ss_pred cccccCCCCccEEEEceeeecCCCCCccccCCCC--CCCCCCCccchHHHHHHHHhCCCeEEEEE
Q 035598 41 LKETCSTGNYEYVILSFLATFGNGQTPMINLAGH--CDPYSNGCTGLSSDIKSCQAKGVKVLLSL 103 (298)
Q Consensus 41 l~~~~~~~~~thii~AF~~~~~~g~~~~~~~~~~--~~~~~~~~~~l~~~i~~~q~~g~KVllSi 103 (298)
...++..-.+|||-++=+.....|.....+..++ .+|.-+...+|.+.++.||++|+||++-+
T Consensus 25 ~l~YL~~LGis~IyLsPi~~a~~gs~hGYdv~D~~~idp~lGt~e~f~~Lv~aah~~Gi~VIlDi 89 (879)
T PRK14511 25 LVPYFADLGVSHLYLSPILAARPGSTHGYDVVDHTRINPELGGEEGLRRLAAALRAHGMGLILDI 89 (879)
T ss_pred HhHHHHHcCCCEEEECcCccCCCCCCCCCCcCCCCCcCCCCCCHHHHHHHHHHHHHCCCEEEEEe
Confidence 3445566789999886432221221111222222 23333556789999999999999999875
No 160
>PLN02361 alpha-amylase
Probab=21.35 E-value=68 Score=31.29 Aligned_cols=58 Identities=12% Similarity=0.059 Sum_probs=33.5
Q ss_pred ccCCCCccEEEEceeee--cCCCCCccccCCCCCCCCCCCccchHHHHHHHHhCCCeEEEEE
Q 035598 44 TCSTGNYEYVILSFLAT--FGNGQTPMINLAGHCDPYSNGCTGLSSDIKSCQAKGVKVLLSL 103 (298)
Q Consensus 44 ~~~~~~~thii~AF~~~--~~~g~~~~~~~~~~~~~~~~~~~~l~~~i~~~q~~g~KVllSi 103 (298)
++..-.+|.|-+.=+.. ...| +...++... +|.-++.++|.+.|++||++|+||++=+
T Consensus 37 ~l~~lG~t~iwl~P~~~~~~~~G-Y~~~d~y~~-~~~~Gt~~el~~li~~~h~~gi~vi~D~ 96 (401)
T PLN02361 37 DLAKSGFTSAWLPPPSQSLAPEG-YLPQNLYSL-NSAYGSEHLLKSLLRKMKQYNVRAMADI 96 (401)
T ss_pred HHHHcCCCEEEeCCCCcCCCCCC-CCccccccc-CcccCCHHHHHHHHHHHHHcCCEEEEEE
Confidence 44566788876642211 1112 211222211 1222456789999999999999999854
No 161
>PF07745 Glyco_hydro_53: Glycosyl hydrolase family 53; InterPro: IPR011683 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This domain is found in family 53 of the glycosyl hydrolase classification []. These enzymes are endo-1,4- beta-galactanases (3.2.1.89 from EC). The structure of this domain is known [] and has a TIM barrel fold.; GO: 0015926 glucosidase activity; PDB: 1HJQ_A 1HJS_A 1HJU_B 1FHL_A 1FOB_A 2GFT_A 1UR4_B 1UR0_A 1R8L_B 2CCR_A ....
Probab=21.30 E-value=7.1e+02 Score=23.62 Aligned_cols=83 Identities=20% Similarity=0.355 Sum_probs=39.8
Q ss_pred cCCCceEEeeecCCCCCCCCCCChhhHHHHHHHHhcCCCCCeEEE---eeecCCCCC-C-----------CCC-cChH--
Q 035598 197 TGVFDYVWVQFYNNPPCQYSSGNIGNLLNAWKQWTSDIPANKIFL---GLPASPAAA-G-----------SGF-IPTA-- 258 (298)
Q Consensus 197 ~~~~D~invq~Yn~~~~~~~~~~~~~~~~~~~~~~~g~p~~Klvl---G~p~~~~~a-~-----------~gy-~~~~-- 258 (298)
...+|+|-+-+|-.+.. +..++.+.++...+... .+|++ |.|.....+ + .+| .+|+
T Consensus 196 g~d~DviGlSyYP~w~~-----~l~~l~~~l~~l~~ry~-K~V~V~Et~yp~t~~d~D~~~n~~~~~~~~~~yp~t~~GQ 269 (332)
T PF07745_consen 196 GVDFDVIGLSYYPFWHG-----TLEDLKNNLNDLASRYG-KPVMVVETGYPWTLDDGDGTGNIIGATSLISGYPATPQGQ 269 (332)
T ss_dssp TGG-SEEEEEE-STTST------HHHHHHHHHHHHHHHT--EEEEEEE---SBS--SSSS--SSSSSTGGTTS-SSHHHH
T ss_pred CCCcceEEEecCCCCcc-----hHHHHHHHHHHHHHHhC-CeeEEEeccccccccccccccccCccccccCCCCCCHHHH
Confidence 46799999999976631 33445555555443332 35555 555442111 0 123 2332
Q ss_pred -HHHHHHHHhhhcC--CCCceEEEEecccc
Q 035598 259 -DLISKVLPAIKGS--AKYGGVMLWSKYYD 285 (298)
Q Consensus 259 -~l~~~~~~~~~~~--~~~gGvm~W~~~~d 285 (298)
+..+.+++.++.- ...-||+-||-.|-
T Consensus 270 ~~~l~~l~~~v~~~p~~~g~GvfYWeP~w~ 299 (332)
T PF07745_consen 270 ADFLRDLINAVKNVPNGGGLGVFYWEPAWI 299 (332)
T ss_dssp HHHHHHHHHHHHTS--TTEEEEEEE-TT-G
T ss_pred HHHHHHHHHHHHHhccCCeEEEEeeccccc
Confidence 3334555666654 45679999996654
No 162
>PRK10658 putative alpha-glucosidase; Provisional
Probab=21.29 E-value=1.8e+02 Score=30.45 Aligned_cols=61 Identities=20% Similarity=0.128 Sum_probs=41.2
Q ss_pred CccchHHHHHHHHhCCCeEEEEEeC-------------------------------CCCC---CCCCCHHHHHHHHHHHH
Q 035598 81 GCTGLSSDIKSCQAKGVKVLLSLGG-------------------------------AAGS---YSLTSTQDAKQVATYLW 126 (298)
Q Consensus 81 ~~~~l~~~i~~~q~~g~KVllSiGG-------------------------------~~~~---~~~~~~~~~~~fa~~v~ 126 (298)
.++...+.|+.+|++|+||++.+== |.+. ..|.+++.|+-+.+.+.
T Consensus 323 ~FPdp~~mi~~L~~~G~k~~~~i~P~i~~~s~~f~e~~~~gy~vk~~~G~~~~~~~W~g~~~~~Dftnp~ar~W~~~~~~ 402 (665)
T PRK10658 323 TFPDPEGMLKRLKAKGLKICVWINPYIAQKSPLFKEGKEKGYLLKRPDGSVWQWDKWQPGMAIVDFTNPDACKWYADKLK 402 (665)
T ss_pred hCCCHHHHHHHHHHCCCEEEEeccCCcCCCchHHHHHHHCCeEEECCCCCEeeeeecCCCceeecCCCHHHHHHHHHHHH
Confidence 3456678899999999999988631 1111 23566777777766653
Q ss_pred HhhcCCCCCCcCCCCCccCeEeeecC
Q 035598 127 NNFLGGHSSSRPLGPAVLDGIDLDIE 152 (298)
Q Consensus 127 ~~f~~g~s~~~~~~~~~~DGiDiD~E 152 (298)
+ +-+.|+||+=.|.-
T Consensus 403 ----------~-l~d~Gvdgfw~D~g 417 (665)
T PRK10658 403 ----------G-LLDMGVDCFKTDFG 417 (665)
T ss_pred ----------H-HHhcCCcEEEecCC
Confidence 2 34678999888854
No 163
>PRK08005 epimerase; Validated
Probab=20.61 E-value=1.9e+02 Score=25.49 Aligned_cols=64 Identities=16% Similarity=0.043 Sum_probs=46.3
Q ss_pred CCCCccCeEeeecCCCCchhHHHHHHHHHhhhhCCCceEEEEcCCCCCCcchhhhhhhcCCCceEEeeecCCC
Q 035598 139 LGPAVLDGIDLDIEGGTSQHWDELARFLAGYSQKGKKVYVTAAPQCPFPDAWIGNALKTGVFDYVWVQFYNNP 211 (298)
Q Consensus 139 ~~~~~~DGiDiD~E~p~~~~~~~li~~LR~~~~~g~~~llT~Ap~~~~~~~~~~~~l~~~~~D~invq~Yn~~ 211 (298)
+.+.|-|-|=+.+|.. .+..++++.+|+. |.+.-|..-|..|. ..+..++ ..+|+|-||.=+.+
T Consensus 77 ~~~~gad~It~H~Ea~--~~~~~~l~~Ik~~---G~k~GlAlnP~Tp~--~~i~~~l--~~vD~VlvMsV~PG 140 (210)
T PRK08005 77 LAAIRPGWIFIHAESV--QNPSEILADIRAI---GAKAGLALNPATPL--LPYRYLA--LQLDALMIMTSEPD 140 (210)
T ss_pred HHHhCCCEEEEcccCc--cCHHHHHHHHHHc---CCcEEEEECCCCCH--HHHHHHH--HhcCEEEEEEecCC
Confidence 3467889999999953 3456788888886 66667888887652 2334444 68999999998765
No 164
>PF04309 G3P_antiterm: Glycerol-3-phosphate responsive antiterminator; InterPro: IPR006699 Glycerol enters bacterial cells via facilitated diffusion, an energy-independent transport process catalysed by the glycerol transport facilitator GlpF, an integral membrane protein of the aquaporin family. Intracellular glycerol is usually converted to glycerol-3-P in an ATP-requiring phosphorylation reaction catalysed by glycerol kinase (GlpK). Glycerol-3-P, the inducer of the glpFK operon, is not a substrate for GlpF and hence remains entrapped in the cell where it is metabolized further. In some bacterial species, for example Bacillus firmus, glycerol-3-P activates the antiterminator GlpP []. In B. subtilis, glpF and glpK are organised in an operon followed by the glycerol-3-P dehydrogenase-encoding glpD gene and preceded by glpP coding for an antiterminator regulating the expression of glpFK, glpD and glpTQ. Their induction requires the inducer glycerol-3-P, which activates the antiterminator GlpP by allowing it to bind to the leader region of glpD and presumably also of glpFK and glpTQ mRNAs.; GO: 0006355 regulation of transcription, DNA-dependent, 0009607 response to biotic stimulus; PDB: 1VKF_A 3KTS_G.
Probab=20.31 E-value=1.8e+02 Score=24.97 Aligned_cols=21 Identities=29% Similarity=0.415 Sum_probs=16.9
Q ss_pred cchHHHHHHHHhCCCeEEEEE
Q 035598 83 TGLSSDIKSCQAKGVKVLLSL 103 (298)
Q Consensus 83 ~~l~~~i~~~q~~g~KVllSi 103 (298)
.++.+.++.+|++|++|++=+
T Consensus 31 ~~l~~~v~~~~~~gK~vfVHi 51 (175)
T PF04309_consen 31 GNLKDIVKRLKAAGKKVFVHI 51 (175)
T ss_dssp CCHHHHHHHHHHTT-EEEEEC
T ss_pred HHHHHHHHHHHHcCCEEEEEe
Confidence 357889999999999999864
No 165
>COG3882 FkbH Predicted enzyme involved in methoxymalonyl-ACP biosynthesis [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=20.29 E-value=1.6e+02 Score=29.66 Aligned_cols=42 Identities=17% Similarity=0.252 Sum_probs=28.9
Q ss_pred cCCCCCccCeEeeecCCCCch--hHHHHHHHHHhhhhCCCceEEEEcCC
Q 035598 137 RPLGPAVLDGIDLDIEGGTSQ--HWDELARFLAGYSQKGKKVYVTAAPQ 183 (298)
Q Consensus 137 ~~~~~~~~DGiDiD~E~p~~~--~~~~li~~LR~~~~~g~~~llT~Ap~ 183 (298)
-.+++-|+|||.|--+.++.+ .+..+|+.||.. +++|+.+.-
T Consensus 236 GVIGedGv~GI~Ls~~~~G~~fk~fQ~~Ik~l~kq-----GVlLav~SK 279 (574)
T COG3882 236 GVIGEDGVDGIRLSNSAEGEAFKTFQNFIKGLKKQ-----GVLLAVCSK 279 (574)
T ss_pred cccccccccceeecCCCCchhHHHHHHHHHHHHhc-----cEEEEEecC
Confidence 468899999999994444432 455666666654 688888754
Done!