Query 035602
Match_columns 194
No_of_seqs 127 out of 421
Neff 5.3
Searched_HMMs 46136
Date Fri Mar 29 04:26:14 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/035602.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/035602hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0858 Predicted membrane pro 100.0 3.1E-42 6.7E-47 294.9 13.2 133 1-151 78-211 (239)
2 PF04511 DER1: Der1-like famil 100.0 2.2E-36 4.7E-41 252.1 11.1 126 1-142 67-197 (197)
3 COG5291 Predicted membrane pro 99.9 8.4E-29 1.8E-33 213.8 4.8 131 1-149 85-216 (313)
4 KOG2632 Rhomboid family protei 95.9 0.027 5.8E-07 49.8 6.9 60 66-125 134-195 (258)
5 smart00553 SEP Domain present 75.3 2 4.3E-05 32.4 1.8 16 170-185 75-90 (93)
6 PF11169 DUF2956: Protein of u 38.5 22 0.00048 27.5 1.8 18 87-104 78-95 (103)
7 KOG2086 Protein tyrosine phosp 25.5 43 0.00092 31.4 1.7 11 170-180 257-267 (380)
8 PHA02132 hypothetical protein 24.9 16 0.00034 26.8 -1.0 29 71-101 33-69 (86)
9 PF09301 DUF1970: Domain of un 19.5 1.2E+02 0.0026 23.1 2.8 25 58-82 8-32 (117)
10 KOG2890 Predicted membrane pro 18.4 3.9E+02 0.0085 24.6 6.3 69 63-131 147-222 (326)
No 1
>KOG0858 consensus Predicted membrane protein [Function unknown]
Probab=100.00 E-value=3.1e-42 Score=294.89 Aligned_cols=133 Identities=45% Similarity=0.911 Sum_probs=123.4
Q ss_pred CcchhhhcccCCCCCchhHHHHHHHHHHHhhhhhccccchhhhhHHHHHhhccccchhhhHHHHHHHHHHHHhhhCCCCe
Q 035602 1 ARYGVQLEKSTFERRTADFLWMMIFSSYIIAEFFFSSWDFYVLSELLALSAIPMLWTPFLGVSLVFMLLYVWSREFPTAQ 80 (194)
Q Consensus 1 ~~ys~~LE~~~f~~~~aDyl~~llf~~~~I~~~~~~~~~~~~~~~l~~~s~~~~~~~~fL~~~L~~~l~YiWsr~np~~~ 80 (194)
+|||++||+++|++|++||+||++|+.++++ +.+.+ ....+|+++|+.+++|+|||+||+++
T Consensus 78 yrY~~~LE~g~f~~rtadf~~mllf~~~l~~----------------~~~~~--~~~~fLg~~l~~~l~YvWs~~Np~~~ 139 (239)
T KOG0858|consen 78 YRYSSMLEEGSFRGRTADFLYMLLFGAVLLT----------------LTGLF--VYIVFLGQSLVFMLVYVWSKRNPDVI 139 (239)
T ss_pred HHHHHHHhcCCCCCchhHHHHHHHHHHHHHH----------------HHHHH--HHHHHHHHHHHHHHHHHHHhhCCCce
Confidence 5899999999999999999999999999543 33332 56889999999999999999999999
Q ss_pred eEEEEeeeecccchHHHHHHHHHHhCCCchhhhHhhhhhhhhhhhhhcccC-CCCCCCcCChHHHHHhhhcc
Q 035602 81 ISIYGLVTLKAFYLPWAMLALDVIFGSPLLPNFLGIIAGHLYYFLTVLHPL-AGGRNILATPRWVHKLVAFW 151 (194)
Q Consensus 81 vs~~Gl~~i~a~yLP~v~l~~~~l~g~~~~~~l~Gi~~GH~y~fl~~i~P~-~~g~~~L~tP~~l~~l~~~~ 151 (194)
|||+|++++||+||||++++++++.|++.+.|++||++||+|+|+++++|. .||+++++||+|++++++++
T Consensus 140 v~F~g~~~f~a~YlPwvll~fs~l~g~~~~~dllGi~~GHiy~fl~~~~p~~~gg~~~l~TP~~l~rl~~~~ 211 (239)
T KOG0858|consen 140 VSFFGLITFKAPYLPWVLLGFSFLFGGSILVDLLGIIVGHIYYFLDDVYPRDYGGRDLLKTPQFLKRLFADS 211 (239)
T ss_pred EEEEEEecCccccchHHHHHHHHHhCCchHHHHHhhhhheeEEEEeeeccCCcCCcCcccCHHHHHHhcCCC
Confidence 999999999999999999999999999889999999999999999999998 67799999999999999973
No 2
>PF04511 DER1: Der1-like family; InterPro: IPR007599 The endoplasmic reticulum (ER) of the yeast Saccharomyces cerevisiae (Baker's yeast) contains a proteolytic system able to selectively degrade misfolded lumenal secretory proteins. For examination of the components involved in this degradation process, mutants were isolated. They could be divided into four complementation groups. The mutations led to stabilisation of two different substrates for this process, and the classes were called der for degradation in the ER. DER1 was cloned by complementation of the der1-2 mutation. The DER1 gene codes for a novel, hydrophobic protein that is localized to the ER. Deletion of DER1 abolished degradation of the substrate proteins, suggesting that the function of the Der1 protein may be specifically required for the degradation process associated with the ER []. Interestingly this family seems distantly related to the Rhomboid family of membrane peptidases. This family may also mediate degradation of misfolded proteins.
Probab=100.00 E-value=2.2e-36 Score=252.10 Aligned_cols=126 Identities=47% Similarity=0.978 Sum_probs=113.6
Q ss_pred CcchhhhcccCCCCCchhHHHHHHHHHHHhhhhhccccchhhhhHHHHHhhcc---ccchhhhHHHHHHHHHHHHhhhCC
Q 035602 1 ARYGVQLEKSTFERRTADFLWMMIFSSYIIAEFFFSSWDFYVLSELLALSAIP---MLWTPFLGVSLVFMLLYVWSREFP 77 (194)
Q Consensus 1 ~~ys~~LE~~~f~~~~aDyl~~llf~~~~I~~~~~~~~~~~~~~~l~~~s~~~---~~~~~fL~~~L~~~l~YiWsr~np 77 (194)
++||++||+++|++|++||+||+++++++|+ +++.+. ..+.++++++|+.+++|+|||+||
T Consensus 67 ~~~s~~LE~~~f~~~~ady~~~ll~~~~~i~----------------~~~~~~~~~~~~~~~l~~~l~~~l~Y~wsr~np 130 (197)
T PF04511_consen 67 YQYSSSLEEGHFQGRSADYLWFLLFGASLIL----------------ILSLLIGPYFFNIPFLGSSLSFALTYIWSRKNP 130 (197)
T ss_pred HHHhhHhccCCCCCCHHHHHHHHHHHHHHHH----------------HHHHhhccchhHHHHHHHHHHHHHHHHHHHhCc
Confidence 4899999999999999999999999998553 333221 135689999999999999999999
Q ss_pred CCeeEEEEeeeecccchHHHHHHHHHHhCC-CchhhhHhhhhhhhhhhhhhcccCC-CCCCCcCChH
Q 035602 78 TAQISIYGLVTLKAFYLPWAMLALDVIFGS-PLLPNFLGIIAGHLYYFLTVLHPLA-GGRNILATPR 142 (194)
Q Consensus 78 ~~~vs~~Gl~~i~a~yLP~v~l~~~~l~g~-~~~~~l~Gi~~GH~y~fl~~i~P~~-~g~~~L~tP~ 142 (194)
+++||++|++++||+|+||+++++++++++ +..+|++||++||+|||+++++|+. +|+++||||+
T Consensus 131 ~~~v~~~g~~~i~a~ylP~~~~~~~~l~~~~~~~~~l~Gi~~Ghly~fl~~~~p~~~~G~~~l~tP~ 197 (197)
T PF04511_consen 131 NAQVSFFGLFTIKAKYLPWVLLAFSLLFGGSSPIPDLLGILVGHLYYFLKDIYPRLPGGKDLLKTPQ 197 (197)
T ss_pred ccceeeEEEEEEChhhHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHhcccccCCCccCCCcC
Confidence 999999999999999999999999999998 7899999999999999999999984 6899999996
No 3
>COG5291 Predicted membrane protein [Function unknown]
Probab=99.95 E-value=8.4e-29 Score=213.81 Aligned_cols=131 Identities=31% Similarity=0.658 Sum_probs=115.5
Q ss_pred CcchhhhcccCCCCCchhHHHHHHHHHHHhhhhhccccchhhhhHHHHHhhccccchhhhHHHHHHHHHHHHhhhCCCCe
Q 035602 1 ARYGVQLEKSTFERRTADFLWMMIFSSYIIAEFFFSSWDFYVLSELLALSAIPMLWTPFLGVSLVFMLLYVWSREFPTAQ 80 (194)
Q Consensus 1 ~~ys~~LE~~~f~~~~aDyl~~llf~~~~I~~~~~~~~~~~~~~~l~~~s~~~~~~~~fL~~~L~~~l~YiWsr~np~~~ 80 (194)
|+||++||+++|...-.||+||+++|..+|. .++.+. -....|+++++.+|+|+||++||+++
T Consensus 85 Y~yS~~LE~g~f~~~lv~Y~~yl~~~~l~i~----------------a~s~I~-gg~saL~tsf~a~ItY~WS~~N~~~~ 147 (313)
T COG5291 85 YRYSRMLEEGCFNTSLVEYFWYLLVISLVIF----------------AISNIY-GGISALGTSFSATITYIWSKRNPRAI 147 (313)
T ss_pred HHHHHHHhccccCccHHHHHHHHHHHHHHHH----------------HHHHHh-cchhhhcchhhhheeeeeeecCCceE
Confidence 6899999999998777899999999999664 344431 23557999999999999999999999
Q ss_pred eEEEEeeeecccchHHHHHHHHHHhC-CCchhhhHhhhhhhhhhhhhhcccCCCCCCCcCChHHHHHhhh
Q 035602 81 ISIYGLVTLKAFYLPWAMLALDVIFG-SPLLPNFLGIIAGHLYYFLTVLHPLAGGRNILATPRWVHKLVA 149 (194)
Q Consensus 81 vs~~Gl~~i~a~yLP~v~l~~~~l~g-~~~~~~l~Gi~~GH~y~fl~~i~P~~~g~~~L~tP~~l~~l~~ 149 (194)
|+|+|+|+++++|||+++++++++++ +....+++|+++||.++++.+|+|.. |++.+.||.|.++++.
T Consensus 148 Iqf~g~i~v~gkYlP~Illgfsfl~~~g~~i~~vlGf~~g~~~h~~g~I~~mi-~r~~~~t~~~~~~~~~ 216 (313)
T COG5291 148 IQFFGFISVPGKYLPFILLGFSFLSRRGISIDDVLGFVVGHLFHYFGDIYPMI-GRDILSTPCWVKKLFN 216 (313)
T ss_pred EEEEEeeecchhhhhHHHHHHHHHhcCCccceeeeeeeeccccccccchhhhh-hcccCCCccccccccc
Confidence 99999999999999999999999999 56799999999999999999999987 6777888888887764
No 4
>KOG2632 consensus Rhomboid family proteins [Function unknown]
Probab=95.91 E-value=0.027 Score=49.76 Aligned_cols=60 Identities=25% Similarity=0.579 Sum_probs=50.2
Q ss_pred HHHHHHHhhhCCCCeeEEEEeeeecccchHHHHHHHH-HHhC-CCchhhhHhhhhhhhhhhh
Q 035602 66 FMLLYVWSREFPTAQISIYGLVTLKAFYLPWAMLALD-VIFG-SPLLPNFLGIIAGHLYYFL 125 (194)
Q Consensus 66 ~~l~YiWsr~np~~~vs~~Gl~~i~a~yLP~v~l~~~-~l~g-~~~~~~l~Gi~~GH~y~fl 125 (194)
++++=+-+-+.|....+++|.+++|++|-||+.++++ ++.. .+++..+-|+++|..|-|.
T Consensus 134 Fam~~~~~~~sp~r~~~~fg~~siP~~l~Pw~lLi~~~~lvp~aSFlghl~GllvG~ay~~~ 195 (258)
T KOG2632|consen 134 FAMMAVLEVQSPVRSRSVFGLFSIPIVLAPWALLIATQILVPQASFLGHLCGLLVGYAYAFS 195 (258)
T ss_pred HHHHHHHhhcCcccchhhcccccccHHHHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHHH
Confidence 3344444778889999999999999999999999997 5555 4789999999999999884
No 5
>smart00553 SEP Domain present in Saccharomyces cerevisiae Shp1, Drosophila melanogaster eyes closed gene (eyc), and vertebrate p47.
Probab=75.32 E-value=2 Score=32.43 Aligned_cols=16 Identities=19% Similarity=0.459 Sum_probs=13.8
Q ss_pred CCCcccccCCCCCCCC
Q 035602 170 AFTGRSYRLNLSSSRP 185 (194)
Q Consensus 170 ~f~GrG~rLG~~~~~~ 185 (194)
.|.|.|||||+..+..
T Consensus 75 ~F~G~G~~LGs~~p~~ 90 (93)
T smart00553 75 PFSGSGQKLGSPGPQS 90 (93)
T ss_pred CCccCCccCCCCCCCc
Confidence 7999999999977654
No 6
>PF11169 DUF2956: Protein of unknown function (DUF2956); InterPro: IPR021339 This family of proteins with unknown function appears to be restricted to Gammaproteobacteria.
Probab=38.51 E-value=22 Score=27.48 Aligned_cols=18 Identities=33% Similarity=0.761 Sum_probs=14.9
Q ss_pred eeecccchHHHHHHHHHH
Q 035602 87 VTLKAFYLPWAMLALDVI 104 (194)
Q Consensus 87 ~~i~a~yLP~v~l~~~~l 104 (194)
..-...+|||++++++++
T Consensus 78 ~~~~~~~LPW~LL~lSW~ 95 (103)
T PF11169_consen 78 SQSRSSWLPWGLLVLSWI 95 (103)
T ss_pred ccccccchhHHHHHHHHH
Confidence 455677999999999994
No 7
>KOG2086 consensus Protein tyrosine phosphatase SHP1/Cofactor for p97 ATPase-mediated vesicle membrane fusion [Nuclear structure]
Probab=25.51 E-value=43 Score=31.43 Aligned_cols=11 Identities=36% Similarity=0.652 Sum_probs=10.4
Q ss_pred CCCcccccCCC
Q 035602 170 AFTGRSYRLNL 180 (194)
Q Consensus 170 ~f~GrG~rLG~ 180 (194)
.|.|+|+|||+
T Consensus 257 pF~G~Gq~LGs 267 (380)
T KOG2086|consen 257 PFSGEGQRLGS 267 (380)
T ss_pred CCCCcCeecCC
Confidence 89999999997
No 8
>PHA02132 hypothetical protein
Probab=24.86 E-value=16 Score=26.78 Aligned_cols=29 Identities=24% Similarity=0.725 Sum_probs=22.4
Q ss_pred HHhhhCCCCe--------eEEEEeeeecccchHHHHHHH
Q 035602 71 VWSREFPTAQ--------ISIYGLVTLKAFYLPWAMLAL 101 (194)
Q Consensus 71 iWsr~np~~~--------vs~~Gl~~i~a~yLP~v~l~~ 101 (194)
-|.|+.|+.+ |+++| +|.+.+||.++.++
T Consensus 33 ewr~~~pdsk~pa~sl~~vqiyg--~ia~awlp~~~~l~ 69 (86)
T PHA02132 33 EWRQKRPDSKMPARSLCAVQVYG--MIAGAWLPLAIYLV 69 (86)
T ss_pred HHHcCCCCccCchhhhhhhHHHH--HHHHHHHHHHHHHH
Confidence 5999999976 56777 57788899876654
No 9
>PF09301 DUF1970: Domain of unknown function (DUF1970); InterPro: IPR015380 This entry is represented by Bacteriophage PRD1, P16; it is a family of uncharacterised viral proteins.; PDB: 1W8X_P.
Probab=19.52 E-value=1.2e+02 Score=23.09 Aligned_cols=25 Identities=36% Similarity=0.825 Sum_probs=19.3
Q ss_pred hhhHHHHHHHHHHHHhhhCCCCeeE
Q 035602 58 PFLGVSLVFMLLYVWSREFPTAQIS 82 (194)
Q Consensus 58 ~fL~~~L~~~l~YiWsr~np~~~vs 82 (194)
+..|..|...+++.|-|..|.++|-
T Consensus 8 ywvggglvliliwlwfrnrpaaqva 32 (117)
T PF09301_consen 8 YWVGGGLVLILIWLWFRNRPAAQVA 32 (117)
T ss_dssp HHHHHHHHHHHHHHHHHHTT-S-SS
T ss_pred eEecCchhhHHHHHHHccChHHHHh
Confidence 3467788999999999999998873
No 10
>KOG2890 consensus Predicted membrane protein [Function unknown]
Probab=18.36 E-value=3.9e+02 Score=24.63 Aligned_cols=69 Identities=20% Similarity=0.303 Sum_probs=52.0
Q ss_pred HHHHHHHHHHhhhCCCCeeEEEEeeeecccchHHHHHHHHHHhC-------CCchhhhHhhhhhhhhhhhhhcccC
Q 035602 63 SLVFMLLYVWSREFPTAQISIYGLVTLKAFYLPWAMLALDVIFG-------SPLLPNFLGIIAGHLYYFLTVLHPL 131 (194)
Q Consensus 63 ~L~~~l~YiWsr~np~~~vs~~Gl~~i~a~yLP~v~l~~~~l~g-------~~~~~~l~Gi~~GH~y~fl~~i~P~ 131 (194)
....-++-.|-|--|+..|--.=.-.++++-+|..+++++++.. ..+.+-..|..++-.|..+..-.|.
T Consensus 147 gilaGilVa~kQllpd~~il~~~~~r~~~~~lP~~~l~~~~il~i~~f~~f~~l~s~~~g~~~sWtYLRfyq~h~~ 222 (326)
T KOG2890|consen 147 GILAGILVAWKQLLPDTIILELKSGRFLYAHLPLLVLFLSLILSIITFLVFASLPSITFGVLVSWTYLRFYQRHPT 222 (326)
T ss_pred HHHHHHHHHHHHHcCceeEEeccchhhhhhhCCHHHHHHHHHHHHHHHHHhhhhHHHHHhhhhhhhhheecccCCc
Confidence 45566777899999998876544445555569999888887753 3456677899999999999888883
Done!