Query 035602
Match_columns 194
No_of_seqs 127 out of 421
Neff 5.3
Searched_HMMs 29240
Date Mon Mar 25 06:53:53 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/035602.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/035602hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1ss6_A P47, NSFL1 cofactor P47 63.4 2.1 7.3E-05 31.6 0.9 15 170-184 84-98 (102)
2 2xov_A Rhomboid protease GLPG; 34.2 62 0.0021 25.0 5.1 50 72-125 124-177 (181)
3 1w8x_P Protein P16, protein S, 20.3 76 0.0026 23.1 3.0 25 58-82 8-32 (117)
4 2jpk_A Bacteriocin lactococcin 13.9 84 0.0029 18.7 1.5 17 90-106 2-18 (35)
5 2l34_A TYRO protein tyrosine k 9.1 1.8E+02 0.0061 16.9 1.9 16 60-75 18-33 (33)
6 2lug_A Myelin basic protein; i 9.1 2.3E+02 0.0077 16.9 2.3 8 142-149 14-21 (36)
7 1emz_A Envelope glycoprotein E 6.4 1.7E+02 0.006 16.3 0.9 13 114-126 4-16 (26)
8 1wyo_A Protein EB3, microtubul 5.4 7.6E+02 0.026 19.1 4.4 20 138-157 112-131 (159)
9 2i5k_A UTP--glucose-1-phosphat 5.4 2.2E+02 0.0075 25.9 1.4 17 172-188 100-116 (488)
10 1jv1_A Glcnac1P uridyltransfer 4.8 2.1E+02 0.0073 26.1 0.9 17 173-189 111-127 (505)
No 1
>1ss6_A P47, NSFL1 cofactor P47, P47 protein, P97; , SEP, signaling protein; NMR {Homo sapiens} SCOP: d.245.1.1
Probab=63.39 E-value=2.1 Score=31.62 Aligned_cols=15 Identities=33% Similarity=0.603 Sum_probs=12.8
Q ss_pred CCCcccccCCCCCCC
Q 035602 170 AFTGRSYRLNLSSSR 184 (194)
Q Consensus 170 ~f~GrG~rLG~~~~~ 184 (194)
.|.|.|||||+..+.
T Consensus 84 ~F~G~G~~LGs~~p~ 98 (102)
T 1ss6_A 84 AFTGEGQKLGSTAPQ 98 (102)
T ss_dssp TSCSSSSSGGGCCSS
T ss_pred CCcccCeECCCCCCC
Confidence 899999999986654
No 2
>2xov_A Rhomboid protease GLPG; membrane protein, hydrolase, intramembrane protease; HET: BNG; 1.65A {Escherichia coli} PDB: 2ic8_A* 2nrf_A 2xtu_A* 2irv_A* 3b45_A* 2o7l_A* 2xow_A* 3txt_A* 2xtv_A* 3b44_A*
Probab=34.23 E-value=62 Score=25.02 Aligned_cols=50 Identities=10% Similarity=0.068 Sum_probs=27.5
Q ss_pred HhhhCCCCeeEEEEeeeecccchHHHHHHHHHHh----CCCchhhhHhhhhhhhhhhh
Q 035602 72 WSREFPTAQISIYGLVTLKAFYLPWAMLALDVIF----GSPLLPNFLGIIAGHLYYFL 125 (194)
Q Consensus 72 Wsr~np~~~vs~~Gl~~i~a~yLP~v~l~~~~l~----g~~~~~~l~Gi~~GH~y~fl 125 (194)
.++++|+.++. ++.+...+-.+.+++++.. +-+...++-|+++|.++-.+
T Consensus 124 ~~~~~p~~~~~----l~~~~~~~~~~~~~~~~~~~~~~~v~~~aHlgG~l~G~l~~~~ 177 (181)
T 2xov_A 124 RGERDPQSGIY----LQRGLIIFALIWIVAGWFDLFGMSMANGAHIAGLAVGLAMAFV 177 (181)
T ss_dssp HHHHCGGGSCC----CCHHHHHHHHHHHHHHHTTSSCCSSCHHHHHHHHHHHHHHHHH
T ss_pred HHhhCcCceee----eHHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHH
Confidence 46888987753 2222221111222333332 22447889999999888654
No 3
>1w8x_P Protein P16, protein S, GPS; virus, P3 major capsid protein, P30 TAPE measure, P31 penton protein, P16 membrane protein; 4.20A {Enterobacteria phage PRD1} SCOP: i.6.1.1
Probab=20.32 E-value=76 Score=23.09 Aligned_cols=25 Identities=36% Similarity=0.825 Sum_probs=21.0
Q ss_pred hhhHHHHHHHHHHHHhhhCCCCeeE
Q 035602 58 PFLGVSLVFMLLYVWSREFPTAQIS 82 (194)
Q Consensus 58 ~fL~~~L~~~l~YiWsr~np~~~vs 82 (194)
+..|..|...+++.|-|..|.++|-
T Consensus 8 ywvggglvliliwlwfrnrpaaqva 32 (117)
T 1w8x_P 8 YWVGGGLVLILIWLWFRNRPAAQVA 32 (117)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCSCSS
T ss_pred eEecCchhhHHHHHHHccChHHHHh
Confidence 3467788999999999999998873
No 4
>2jpk_A Bacteriocin lactococcin-G subunit beta; peptide, antimicrobial, membrane bound, antimicrobial protein; NMR {Lactococcus lactis} PDB: 2jpm_A
Probab=13.86 E-value=84 Score=18.67 Aligned_cols=17 Identities=35% Similarity=0.477 Sum_probs=14.2
Q ss_pred cccchHHHHHHHHHHhC
Q 035602 90 KAFYLPWAMLALDVIFG 106 (194)
Q Consensus 90 ~a~yLP~v~l~~~~l~g 106 (194)
|..+|||+.-+.+++.|
T Consensus 2 ~~~wl~w~~pay~fi~g 18 (35)
T 2jpk_A 2 KWGWLAWVDPAYEFIKG 18 (35)
T ss_dssp CCCHHHHHHHHHHHHHH
T ss_pred CcccccccchHHHHHHH
Confidence 45789999999999865
No 5
>2l34_A TYRO protein tyrosine kinase-binding protein; immunoreceptor, transmembrane assembly, DAP12, protein bindi; NMR {Homo sapiens} PDB: 2l35_B
Probab=9.13 E-value=1.8e+02 Score=16.94 Aligned_cols=16 Identities=19% Similarity=0.295 Sum_probs=11.8
Q ss_pred hHHHHHHHHHHHHhhh
Q 035602 60 LGVSLVFMLLYVWSRE 75 (194)
Q Consensus 60 L~~~L~~~l~YiWsr~ 75 (194)
.+..++..++|.|+|.
T Consensus 18 ~~t~~i~~~vy~~~r~ 33 (33)
T 2l34_A 18 VLTVLIALAVYFLGRL 33 (33)
T ss_dssp HHHHHHHHHHHHHCC-
T ss_pred HHHHHHHHHHhheecC
Confidence 5556788888998874
No 6
>2lug_A Myelin basic protein; intrinsically disordered proteins, dodecylphosphocholine MIC myelin membrane, lipid binding protein; NMR {Mus musculus}
Probab=9.10 E-value=2.3e+02 Score=16.88 Aligned_cols=8 Identities=13% Similarity=0.522 Sum_probs=4.4
Q ss_pred HHHHHhhh
Q 035602 142 RWVHKLVA 149 (194)
Q Consensus 142 ~~l~~l~~ 149 (194)
.|+++++.
T Consensus 14 hffknivs 21 (36)
T 2lug_A 14 HFFKNIVT 21 (36)
T ss_dssp HHHHHHHC
T ss_pred HhhhhccC
Confidence 36666653
No 7
>1emz_A Envelope glycoprotein E1; peptide, transmembrane domain, envelope protein E1, hepatitis C virus, viral protein; NMR {Synthetic} SCOP: j.35.1.1
Probab=6.42 E-value=1.7e+02 Score=16.33 Aligned_cols=13 Identities=31% Similarity=0.777 Sum_probs=10.4
Q ss_pred Hhhhhhhhhhhhh
Q 035602 114 LGIIAGHLYYFLT 126 (194)
Q Consensus 114 ~Gi~~GH~y~fl~ 126 (194)
.|+++||.||...
T Consensus 4 wGvl~glayfsm~ 16 (26)
T 1emz_A 4 WGVLAGIAYFSMV 16 (26)
T ss_dssp HHHHHHHHHHHHH
T ss_pred chhhHHHHHHHHh
Confidence 5888999998764
No 8
>1wyo_A Protein EB3, microtubule-associated protein RP/EB family member 3; CH domain, microtubule-binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=5.40 E-value=7.6e+02 Score=19.11 Aligned_cols=20 Identities=15% Similarity=0.194 Sum_probs=12.2
Q ss_pred cCChHHHHHhhhcccCCCCC
Q 035602 138 LATPRWVHKLVAFWRLGHPT 157 (194)
Q Consensus 138 L~tP~~l~~l~~~~~~~~~~ 157 (194)
|+==+|++++++....+..+
T Consensus 112 lEFlqWfk~f~d~n~~~~~Y 131 (159)
T 1wyo_A 112 FEFIQWFKKFFDANYDGKDY 131 (159)
T ss_dssp HHHHHHHHHHHHTTCCSCCC
T ss_pred HHHHHHHHHHHHHcCCCCCC
Confidence 44457888888765444433
No 9
>2i5k_A UTP--glucose-1-phosphate uridylyltransferase; LEFT-handed beta-helix, SGC domain; 3.10A {Saccharomyces cerevisiae}
Probab=5.37 E-value=2.2e+02 Score=25.88 Aligned_cols=17 Identities=6% Similarity=0.135 Sum_probs=13.3
Q ss_pred CcccccCCCCCCCCCCC
Q 035602 172 TGRSYRLNLSSSRPFFP 188 (194)
Q Consensus 172 ~GrG~rLG~~~~~~~~~ 188 (194)
-|+|-|||++.+++-.|
T Consensus 100 GG~GTRmgs~~PK~l~~ 116 (488)
T 2i5k_A 100 GGLGTSMGCVGPKSVIE 116 (488)
T ss_dssp CCBSGGGTCCSBSTTSC
T ss_pred CCCcccCCCCCCccccc
Confidence 39999999877776554
No 10
>1jv1_A Glcnac1P uridyltransferase isoform 1: AGX1; nucleotidyltransferase, alternative splicing; HET: UD1; 1.90A {Homo sapiens} SCOP: c.68.1.5 PDB: 1jv3_A* 1jvg_A* 1jvd_A* 1vm8_A*
Probab=4.78 E-value=2.1e+02 Score=26.08 Aligned_cols=17 Identities=18% Similarity=0.436 Sum_probs=13.6
Q ss_pred cccccCCCCCCCCCCCC
Q 035602 173 GRSYRLNLSSSRPFFPR 189 (194)
Q Consensus 173 GrG~rLG~~~~~~~~~~ 189 (194)
|+|.|||.+.+++..|-
T Consensus 111 G~GTRLg~~~PK~l~pv 127 (505)
T 1jv1_A 111 GQGTRLGVAYPKGMYDV 127 (505)
T ss_dssp CCCCTTSCSSCGGGCCC
T ss_pred CccccCCCCCCCcccee
Confidence 89999998777776554
Done!