Query 035602
Match_columns 194
No_of_seqs 127 out of 421
Neff 5.3
Searched_HMMs 13730
Date Mon Mar 25 06:54:03 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/035602.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/035602hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1ss6a_ d.245.1.1 (A:) NSFL1 ( 66.2 0.82 6E-05 32.2 0.9 14 170-183 84-97 (102)
2 d1jb0i_ f.23.17.1 (I:) Subunit 33.1 7.6 0.00055 22.3 1.1 13 89-101 5-17 (38)
3 d3b45a1 f.51.1.1 (A:91-270) Gl 12.0 46 0.0034 23.4 1.9 18 110-127 162-179 (180)
4 d2icya2 c.68.1.5 (A:6-383) UDP 5.5 61 0.0044 26.5 -0.0 16 173-188 83-98 (378)
5 d2byka1 a.22.1.3 (A:29-100) Ch 4.9 1E+02 0.0076 19.0 0.8 11 121-131 60-70 (72)
6 d1n1jb_ a.22.1.3 (B:) Nuclear 4.6 1.2E+02 0.0086 18.6 1.0 11 121-131 68-78 (78)
7 d1soua_ c.124.1.6 (A:) Hypothe 3.7 2E+02 0.015 20.4 1.8 15 168-182 119-133 (194)
8 d1k9vf_ c.23.16.1 (F:) GAT sub 3.4 83 0.006 22.1 -0.8 13 112-124 79-91 (200)
9 d1q90r_ f.23.12.1 (R:) ISP sub 3.2 1.5E+02 0.011 16.7 0.5 16 110-125 22-37 (39)
10 d2ay0a1 a.43.1.11 (A:3-45) Bif 3.1 2.2E+02 0.016 16.2 1.2 8 139-146 25-32 (43)
No 1
>d1ss6a_ d.245.1.1 (A:) NSFL1 (p97 ATPase) cofactor p47, SEP domain {Human (Homo sapiens) [TaxId: 9606]}
Probab=66.22 E-value=0.82 Score=32.18 Aligned_cols=14 Identities=36% Similarity=0.610 Sum_probs=12.0
Q ss_pred CCCcccccCCCCCC
Q 035602 170 AFTGRSYRLNLSSS 183 (194)
Q Consensus 170 ~f~GrG~rLG~~~~ 183 (194)
.|.|.|||||+..+
T Consensus 84 ~F~G~G~~LGSp~P 97 (102)
T d1ss6a_ 84 AFTGEGQKLGSTAP 97 (102)
T ss_dssp TSCSSSSSGGGCCS
T ss_pred CccccCccCCCCCC
Confidence 79999999998644
No 2
>d1jb0i_ f.23.17.1 (I:) Subunit VIII of photosystem I reaction centre, PsaI {Synechococcus elongatus [TaxId: 32046]}
Probab=33.10 E-value=7.6 Score=22.31 Aligned_cols=13 Identities=31% Similarity=0.917 Sum_probs=10.1
Q ss_pred ecccchHHHHHHH
Q 035602 89 LKAFYLPWAMLAL 101 (194)
Q Consensus 89 i~a~yLP~v~l~~ 101 (194)
.-|.||||+++=+
T Consensus 5 yAAsyLPwI~iPv 17 (38)
T d1jb0i_ 5 YAASFLPWIFIPV 17 (38)
T ss_dssp STTTTHHHHHHHH
T ss_pred hHHHhcchhHHHH
Confidence 4588999998754
No 3
>d3b45a1 f.51.1.1 (A:91-270) GlpG {Escherichia coli [TaxId: 562]}
Probab=11.99 E-value=46 Score=23.43 Aligned_cols=18 Identities=17% Similarity=0.270 Sum_probs=15.1
Q ss_pred hhhhHhhhhhhhhhhhhh
Q 035602 110 LPNFLGIIAGHLYYFLTV 127 (194)
Q Consensus 110 ~~~l~Gi~~GH~y~fl~~ 127 (194)
..++.|+++|.++-+..+
T Consensus 162 ~aHlgG~l~G~~~~~~~~ 179 (180)
T d3b45a1 162 GAHIAGLAVGLAMAFVDS 179 (180)
T ss_dssp HHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 566999999999988765
No 4
>d2icya2 c.68.1.5 (A:6-383) UDP-glucose pyrophosphorylase 2 (UDPGP 2) {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}
Probab=5.54 E-value=61 Score=26.49 Aligned_cols=16 Identities=6% Similarity=0.218 Sum_probs=12.8
Q ss_pred cccccCCCCCCCCCCC
Q 035602 173 GRSYRLNLSSSRPFFP 188 (194)
Q Consensus 173 GrG~rLG~~~~~~~~~ 188 (194)
|+|-|||.+.+++..|
T Consensus 83 G~GTRLG~~~pK~~~~ 98 (378)
T d2icya2 83 GLGTTMGCTGPKSVIE 98 (378)
T ss_dssp CBSGGGTCCSBGGGSE
T ss_pred CcccccCCCCCceeeE
Confidence 9999999887766554
No 5
>d2byka1 a.22.1.3 (A:29-100) Chrac-16 {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}
Probab=4.87 E-value=1e+02 Score=18.96 Aligned_cols=11 Identities=27% Similarity=0.283 Sum_probs=7.4
Q ss_pred hhhhhhhcccC
Q 035602 121 LYYFLTVLHPL 131 (194)
Q Consensus 121 ~y~fl~~i~P~ 131 (194)
-|.||.++.|+
T Consensus 60 ~f~FL~divP~ 70 (72)
T d2byka1 60 NLEFLLQIVPQ 70 (72)
T ss_dssp TTGGGTTTSCS
T ss_pred hhhHHHHhccC
Confidence 46677777775
No 6
>d1n1jb_ a.22.1.3 (B:) Nuclear transcription factor Y subunit gamma (Nf-Yc2) {Human (Homo sapiens) [TaxId: 9606]}
Probab=4.63 E-value=1.2e+02 Score=18.56 Aligned_cols=11 Identities=27% Similarity=0.437 Sum_probs=7.0
Q ss_pred hhhhhhhcccC
Q 035602 121 LYYFLTVLHPL 131 (194)
Q Consensus 121 ~y~fl~~i~P~ 131 (194)
-|.||.++.|+
T Consensus 68 ~~~FL~d~vPk 78 (78)
T d1n1jb_ 68 QFDFLIDIVPR 78 (78)
T ss_dssp GGGGGTTTSCC
T ss_pred hhHHHHHhCCC
Confidence 35677777664
No 7
>d1soua_ c.124.1.6 (A:) Hypothetical protein aq_1731 {Aquifex aeolicus [TaxId: 63363]}
Probab=3.70 E-value=2e+02 Score=20.43 Aligned_cols=15 Identities=40% Similarity=0.634 Sum_probs=11.7
Q ss_pred CCCCCcccccCCCCC
Q 035602 168 GGAFTGRSYRLNLSS 182 (194)
Q Consensus 168 ~~~f~GrG~rLG~~~ 182 (194)
+-+|--+|+|||-+.
T Consensus 119 ~lafD~~G~RlG~G~ 133 (194)
T d1soua_ 119 GVAFDLEGYRLGFGK 133 (194)
T ss_dssp CSCBCSSSCBCCSCC
T ss_pred HHHHhhcCCccccCC
Confidence 347888999999764
No 8
>d1k9vf_ c.23.16.1 (F:) GAT subunit, HisH, (or domain) of imidazoleglycerolphosphate synthase HisF {Thermotoga maritima [TaxId: 2336]}
Probab=3.44 E-value=83 Score=22.14 Aligned_cols=13 Identities=23% Similarity=0.478 Sum_probs=9.9
Q ss_pred hhHhhhhhhhhhh
Q 035602 112 NFLGIIAGHLYYF 124 (194)
Q Consensus 112 ~l~Gi~~GH~y~f 124 (194)
-++|||+||--.+
T Consensus 79 PiLGIClG~QlL~ 91 (200)
T d1k9vf_ 79 YVVGVCLGMQLLF 91 (200)
T ss_dssp EEEEETHHHHTTE
T ss_pred eEEEEecceeEEe
Confidence 4799999996443
No 9
>d1q90r_ f.23.12.1 (R:) ISP subunit from the cytochrome b6f complex, transmembrane anchor {Chlamydomonas reinhardtii [TaxId: 3055]}
Probab=3.23 E-value=1.5e+02 Score=16.67 Aligned_cols=16 Identities=13% Similarity=0.075 Sum_probs=9.7
Q ss_pred hhhhHhhhhhhhhhhh
Q 035602 110 LPNFLGIIAGHLYYFL 125 (194)
Q Consensus 110 ~~~l~Gi~~GH~y~fl 125 (194)
-....|.+.+++++|.
T Consensus 22 ~~~~~g~l~py~~fFv 37 (39)
T d1q90r_ 22 GLPITTLALGYGAFFV 37 (39)
T ss_dssp HHHHHHHHHHHHHHHS
T ss_pred chhhhhhccceeEEec
Confidence 3445666677777663
No 10
>d2ay0a1 a.43.1.11 (A:3-45) Bifunctional protein putA {Escherichia coli [TaxId: 562]}
Probab=3.13 E-value=2.2e+02 Score=16.19 Aligned_cols=8 Identities=50% Similarity=1.128 Sum_probs=6.5
Q ss_pred CChHHHHH
Q 035602 139 ATPRWVHK 146 (194)
Q Consensus 139 ~tP~~l~~ 146 (194)
+||.|+.+
T Consensus 25 RtpHWL~k 32 (43)
T d2ay0a1 25 RTPHWLIK 32 (43)
T ss_dssp CCHHHHHH
T ss_pred CCHHHHHH
Confidence 68999875
Done!