BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 035603
(431 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|4B4T|K Chain K, Near-Atomic Resolution Structural Model Of The Yeast 26s
Proteasome
Length = 428
Score = 59.7 bits (143), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 44/153 (28%), Positives = 70/153 (45%), Gaps = 42/153 (27%)
Query: 217 EYYAKIGKAWKRGYLLFGPPGTGKSTMIAAMANC-----------------------LNY 253
+ Y +IG RG LL+GPPGTGK+ ++ A+AN +
Sbjct: 196 DLYEQIGIDPPRGVLLYGPPGTGKTMLVKAVANSTKAAFIRVNGSEFVHKYLGEGPRMVR 255
Query: 254 DVYDLELTSVENNNELRSLLVD----ISSKK--------KKSNVTLSGLLNCIGGLWSTC 301
DV+ L + EN + + +D I++K+ ++ L LL + G +
Sbjct: 256 DVFRL---ARENAPSI--IFIDEVDSIATKRFDAQTGSDREVQRILIELLTQMDGFDQST 310
Query: 302 GGERIIVFTTNHVDKLDPALIRRGRMDKHIEMP 334
+ ++ TN D LDPAL+R GR+D+ IE P
Sbjct: 311 NVK--VIMATNRADTLDPALLRPGRLDRKIEFP 341
>pdb|4B4T|J Chain J, Near-Atomic Resolution Structural Model Of The Yeast 26s
Proteasome
Length = 405
Score = 58.2 bits (139), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 45/148 (30%), Positives = 68/148 (45%), Gaps = 32/148 (21%)
Query: 217 EYYAKIGKAWKRGYLLFGPPGTGKSTMIAAMA---NCLNYDVYDLELTSV---ENNNELR 270
E + +G A +G +L+GPPGTGK+ + A+A +C V EL E + +R
Sbjct: 172 ELFESLGIAQPKGVILYGPPGTGKTLLARAVAHHTDCKFIRVSGAELVQKYIGEGSRMVR 231
Query: 271 SLLV----------------DISSKK--------KKSNVTLSGLLNCIGGLWSTCGGERI 306
L V I S + + T+ LLN + G ++ +
Sbjct: 232 ELFVMAREHAPSIIFMDEIDSIGSTRVEGSGGGDSEVQRTMLELLNQLDGFETSKNIK-- 289
Query: 307 IVFTTNHVDKLDPALIRRGRMDKHIEMP 334
I+ TN +D LDPAL+R GR+D+ IE P
Sbjct: 290 IIMATNRLDILDPALLRPGRIDRKIEFP 317
>pdb|4B4T|L Chain L, Near-Atomic Resolution Structural Model Of The Yeast 26s
Proteasome
Length = 437
Score = 56.6 bits (135), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 43/161 (26%), Positives = 71/161 (44%), Gaps = 36/161 (22%)
Query: 217 EYYAKIGKAWKRGYLLFGPPGTGKSTMIAAMANCLNYDVYDLELTSV------ENNNELR 270
E + ++G +G LL+GPPGTGK+ + A+A + + + + E+ +R
Sbjct: 205 EIFQRVGIKPPKGVLLYGPPGTGKTLLAKAVAATIGANFIFSPASGIVDKYIGESARIIR 264
Query: 271 SLL---------------VDI---------SSKKKKSNVTLSGLLNCIGGLWSTCGGERI 306
+ VD +S ++ TL LL + G + G+
Sbjct: 265 EMFAYAKEHEPCIIFMDEVDAIGGRRFSEGTSADREIQRTLMELLTQMDGFDNL--GQTK 322
Query: 307 IVFTTNHVDKLDPALIRRGRMDKHIEMPYCC----FEAFKV 343
I+ TN D LDPAL+R GR+D+ +E+P E FK+
Sbjct: 323 IIMATNRPDTLDPALLRPGRLDRKVEIPLPNEAGRLEIFKI 363
>pdb|3H4M|A Chain A, Aaa Atpase Domain Of The Proteasome- Activating
Nucleotidase
pdb|3H4M|B Chain B, Aaa Atpase Domain Of The Proteasome- Activating
Nucleotidase
pdb|3H4M|C Chain C, Aaa Atpase Domain Of The Proteasome- Activating
Nucleotidase
Length = 285
Score = 54.3 bits (129), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 45/147 (30%), Positives = 67/147 (45%), Gaps = 30/147 (20%)
Query: 217 EYYAKIGKAWKRGYLLFGPPGTGKSTMIAAMANCLN---YDVYDLELTSVENNNELRSLL 273
E + K+G +G LL+GPPGTGK+ + A+A N V EL + E SL+
Sbjct: 41 ELFEKVGIEPPKGILLYGPPGTGKTLLAKAVATETNATFIRVVGSELVK-KFIGEGASLV 99
Query: 274 VDI--SSKKKKSNVTLSGLLNCIGGLWSTC--GGER----------------------II 307
DI +K+K ++ ++ I + GG+R I
Sbjct: 100 KDIFKLAKEKAPSIIFIDEIDAIAAKRTDALTGGDREVQRTLMQLLAEMDGFDARGDVKI 159
Query: 308 VFTTNHVDKLDPALIRRGRMDKHIEMP 334
+ TN D LDPA++R GR D+ IE+P
Sbjct: 160 IGATNRPDILDPAILRPGRFDRIIEVP 186
>pdb|4B4T|I Chain I, Near-Atomic Resolution Structural Model Of The Yeast 26s
Proteasome
Length = 437
Score = 52.0 bits (123), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 40/145 (27%), Positives = 65/145 (44%), Gaps = 32/145 (22%)
Query: 217 EYYAKIGKAWKRGYLLFGPPGTGKSTMIAAMANCLNYDVYDL------------------ 258
E Y ++G +G +L+G PGTGK+ + A+AN + +
Sbjct: 206 ELYEEMGIKPPKGVILYGAPGTGKTLLAKAVANQTSATFLRIVGSELIQKYLGDGPRLCR 265
Query: 259 ELTSVENNNELRSLLVD----ISSKKKKSNV--------TLSGLLNCIGGLWSTCGGERI 306
++ V N + +D I +K+ SN T+ LLN + G G+
Sbjct: 266 QIFKVAGENAPSIVFIDEIDAIGTKRYDSNSGGEREIQRTMLELLNQLDGFDDR--GDVK 323
Query: 307 IVFTTNHVDKLDPALIRRGRMDKHI 331
++ TN ++ LDPALIR GR+D+ I
Sbjct: 324 VIMATNKIETLDPALIRPGRIDRKI 348
>pdb|2QZ4|A Chain A, Human Paraplegin, Aaa Domain In Complex With Adp
Length = 262
Score = 51.6 bits (122), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 43/153 (28%), Positives = 68/153 (44%), Gaps = 39/153 (25%)
Query: 217 EYYAKIGKAWKRGYLLFGPPGTGKSTMIAAMANCLNYDVYDLELTSVE--------NNNE 268
E + ++G +G LL GPPG GK+ + A+A V L + E
Sbjct: 29 ERFLQLGAKVPKGALLLGPPGCGKTLLAKAVAT--EAQVPFLAMAGAEFVEVIGGLGAAR 86
Query: 269 LRSL-------------LVDISSKKKKSNVTLSGLLNC------------IGGLWSTCGG 303
+RSL + +I + KK + T+SG N + G+ +T
Sbjct: 87 VRSLFKEARARAPCIVYIDEIDAVGKKRSTTMSGFSNTEEEQTLNQLLVEMDGMGTT--D 144
Query: 304 ERIIVFTTNHVDKLDPALIRRGRMDKH--IEMP 334
I++ +TN D LD AL+R GR+D+H I++P
Sbjct: 145 HVIVLASTNRADILDGALMRPGRLDRHVFIDLP 177
>pdb|4B4T|M Chain M, Near-Atomic Resolution Structural Model Of The Yeast 26s
Proteasome
Length = 434
Score = 51.6 bits (122), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 43/150 (28%), Positives = 66/150 (44%), Gaps = 34/150 (22%)
Query: 217 EYYAKIGKAWKRGYLLFGPPGTGKSTMIAAMANCLNYDVYDLELTSV------ENNNELR 270
+ + +G +G L++GPPGTGK+ + A A N L + E +R
Sbjct: 205 DKFKDMGIRAPKGALMYGPPGTGKTLLARACAAQTNATFLKLAAPQLVQMYIGEGAKLVR 264
Query: 271 S------------LLVD----ISSKK--------KKSNVTLSGLLNCIGGLWSTCGGERI 306
+ +D I +K+ ++ T+ LLN + G S +R+
Sbjct: 265 DAFALAKEKAPTIIFIDELDAIGTKRFDSEKSGDREVQRTMLELLNQLDGFSS---DDRV 321
Query: 307 IVFT-TNHVDKLDPALIRRGRMDKHIEMPY 335
V TN VD LDPAL+R GR+D+ IE P
Sbjct: 322 KVLAATNRVDVLDPALLRSGRLDRKIEFPL 351
>pdb|4B4T|H Chain H, Near-Atomic Resolution Structural Model Of The Yeast 26s
Proteasome
Length = 467
Score = 50.1 bits (118), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 41/146 (28%), Positives = 63/146 (43%), Gaps = 32/146 (21%)
Query: 217 EYYAKIGKAWKRGYLLFGPPGTGKSTMIAAMANCLN---YDVYDLELTSV---ENNNELR 270
E +A +G +G LL+GPPGTGK+ A+AN + V EL E +R
Sbjct: 233 ERFATLGIDPPKGILLYGPPGTGKTLCARAVANRTDATFIRVIGSELVQKYVGEGARMVR 292
Query: 271 SLLVDISSKKKKSNVTLSGLLNCIGGLWSTCG------------------------GERI 306
L ++ KK+ + ++ +GG G G
Sbjct: 293 ELFE--MARTKKACIIFFDEIDAVGGARFDDGAGGDNEVQRTMLELITQLDGFDPRGNIK 350
Query: 307 IVFTTNHVDKLDPALIRRGRMDKHIE 332
++F TN + LDPAL+R GR+D+ +E
Sbjct: 351 VMFATNRPNTLDPALLRPGRIDRKVE 376
>pdb|2CE7|A Chain A, Edta Treated
pdb|2CE7|B Chain B, Edta Treated
pdb|2CE7|C Chain C, Edta Treated
pdb|2CE7|D Chain D, Edta Treated
pdb|2CE7|E Chain E, Edta Treated
pdb|2CE7|F Chain F, Edta Treated
pdb|2CEA|A Chain A, Cell Division Protein Ftsh
pdb|2CEA|B Chain B, Cell Division Protein Ftsh
pdb|2CEA|C Chain C, Cell Division Protein Ftsh
pdb|2CEA|D Chain D, Cell Division Protein Ftsh
pdb|2CEA|E Chain E, Cell Division Protein Ftsh
pdb|2CEA|F Chain F, Cell Division Protein Ftsh
Length = 476
Score = 50.1 bits (118), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 43/150 (28%), Positives = 63/150 (42%), Gaps = 32/150 (21%)
Query: 212 FTEGKEYYAKIGKAWKRGYLLFGPPGTGKSTMIAAMANCLNYDVYDL------ELTSVEN 265
F + + +IG +G LL GPPGTGK+ + A+A N + + EL
Sbjct: 34 FLKDPSKFNRIGARMPKGILLVGPPGTGKTLLARAVAGEANVPFFHISGSDFVELFVGVG 93
Query: 266 NNELRSLL---------------VDISSKKKKSNV---------TLSGLLNCIGGLWSTC 301
+R L +D + + + + TL+ LL + G S
Sbjct: 94 AARVRDLFAQAKAHAPCIVFIDEIDAVGRHRGAGLGGGHDEREQTLNQLLVEMDGFDSKE 153
Query: 302 GGERIIVFTTNHVDKLDPALIRRGRMDKHI 331
G I++ TN D LDPAL+R GR DK I
Sbjct: 154 G--IIVMAATNRPDILDPALLRPGRFDKKI 181
>pdb|2R62|A Chain A, Crystal Structure Of Helicobacter Pylori Atp Dependent
Protease, Ftsh
pdb|2R62|B Chain B, Crystal Structure Of Helicobacter Pylori Atp Dependent
Protease, Ftsh
pdb|2R65|A Chain A, Crystal Structure Of Helicobacter Pylori Atp Dependent
Protease, Ftsh Adp Complex
pdb|2R65|B Chain B, Crystal Structure Of Helicobacter Pylori Atp Dependent
Protease, Ftsh Adp Complex
pdb|2R65|C Chain C, Crystal Structure Of Helicobacter Pylori Atp Dependent
Protease, Ftsh Adp Complex
pdb|2R65|D Chain D, Crystal Structure Of Helicobacter Pylori Atp Dependent
Protease, Ftsh Adp Complex
pdb|2R65|E Chain E, Crystal Structure Of Helicobacter Pylori Atp Dependent
Protease, Ftsh Adp Complex
Length = 268
Score = 48.9 bits (115), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 40/145 (27%), Positives = 63/145 (43%), Gaps = 30/145 (20%)
Query: 217 EYYAKIGKAWKRGYLLFGPPGTGKSTMIAAMANCLNYDVYDLELTS-VE-----NNNELR 270
E YA +G +G LL GPPGTGK+ + A+A + + + +S +E + +R
Sbjct: 34 ERYANLGAKIPKGVLLVGPPGTGKTLLAKAVAGEAHVPFFSMGGSSFIEMFVGLGASRVR 93
Query: 271 SLL---------------VDISSKKKKSNVTLSG------LLNCIGGLWSTCGGER---I 306
L +D K + + +SG LN + G E I
Sbjct: 94 DLFETAKKQAPSIIFIDEIDAIGKSRAAGGVVSGNDEREQTLNQLLAEMDGFGSENAPVI 153
Query: 307 IVFTTNHVDKLDPALIRRGRMDKHI 331
++ TN + LDPAL+R GR D+ +
Sbjct: 154 VLAATNRPEILDPALMRPGRFDRQV 178
>pdb|1R7R|A Chain A, The Crystal Structure Of Murine P97VCP AT 3.6A
Length = 816
Score = 48.9 bits (115), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 41/142 (28%), Positives = 68/142 (47%), Gaps = 29/142 (20%)
Query: 219 YAKIGKAWKRGYLLFGPPGTGKSTMIAAMAN---CLNYDVYDLELTSV---ENNNELRS- 271
+ IG RG LL+GPPGTGK+ + A+AN + + E+ S E+ + LR
Sbjct: 230 FKAIGVKPPRGILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKA 289
Query: 272 -----------LLVD----ISSKKKKSN-----VTLSGLLNCIGGLWSTCGGERIIVFTT 311
+ +D I+ K++K++ +S LL + GL I++ T
Sbjct: 290 FEEAEKNAPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQR--AHVIVMAAT 347
Query: 312 NHVDKLDPALIRRGRMDKHIEM 333
N + +DPAL R GR D+ +++
Sbjct: 348 NRPNSIDPALRRFGRFDREVDI 369
Score = 41.2 bits (95), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 35/152 (23%), Positives = 67/152 (44%), Gaps = 32/152 (21%)
Query: 213 TEGKEYYAKIGKAWKRGYLLFGPPGTGKSTMIAAMANCLNYDVYDL---ELTSV---ENN 266
E + + K G +G L +GPPG GK+ + A+AN + + EL ++ E+
Sbjct: 497 VEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQANFISIKGPELLTMWFGESE 556
Query: 267 NELRSLL---------------VDISSKKKK---------SNVTLSGLLNCIGGLWSTCG 302
+R + +D +K + ++ ++ +L + G+ +
Sbjct: 557 ANVREIFDKARQAAPCVLFFDELDSIAKARGGNIGDGGGAADRVINQILTEMDGMSTK-- 614
Query: 303 GERIIVFTTNHVDKLDPALIRRGRMDKHIEMP 334
I+ TN D +DPA++R GR+D+ I +P
Sbjct: 615 KNVFIIGATNRPDIIDPAILRPGRLDQLIYIP 646
>pdb|3CF1|A Chain A, Structure Of P97VCP IN COMPLEX WITH ADPADP.ALFX
pdb|3CF1|B Chain B, Structure Of P97VCP IN COMPLEX WITH ADPADP.ALFX
pdb|3CF1|C Chain C, Structure Of P97VCP IN COMPLEX WITH ADPADP.ALFX
pdb|3CF2|A Chain A, Structure Of P97VCP IN COMPLEX WITH ADPAMP-Pnp
pdb|3CF2|B Chain B, Structure Of P97VCP IN COMPLEX WITH ADPAMP-Pnp
pdb|3CF2|C Chain C, Structure Of P97VCP IN COMPLEX WITH ADPAMP-Pnp
pdb|3CF2|D Chain D, Structure Of P97VCP IN COMPLEX WITH ADPAMP-Pnp
pdb|3CF3|A Chain A, Structure Of P97VCP IN COMPLEX WITH ADP
pdb|3CF3|B Chain B, Structure Of P97VCP IN COMPLEX WITH ADP
pdb|3CF3|C Chain C, Structure Of P97VCP IN COMPLEX WITH ADP
Length = 806
Score = 48.9 bits (115), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 41/142 (28%), Positives = 68/142 (47%), Gaps = 29/142 (20%)
Query: 219 YAKIGKAWKRGYLLFGPPGTGKSTMIAAMAN---CLNYDVYDLELTSV---ENNNELRS- 271
+ IG RG LL+GPPGTGK+ + A+AN + + E+ S E+ + LR
Sbjct: 230 FKAIGVKPPRGILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKA 289
Query: 272 -----------LLVD----ISSKKKKSN-----VTLSGLLNCIGGLWSTCGGERIIVFTT 311
+ +D I+ K++K++ +S LL + GL I++ T
Sbjct: 290 FEEAEKNAPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQR--AHVIVMAAT 347
Query: 312 NHVDKLDPALIRRGRMDKHIEM 333
N + +DPAL R GR D+ +++
Sbjct: 348 NRPNSIDPALRRFGRFDREVDI 369
Score = 41.2 bits (95), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 35/152 (23%), Positives = 67/152 (44%), Gaps = 32/152 (21%)
Query: 213 TEGKEYYAKIGKAWKRGYLLFGPPGTGKSTMIAAMANCLNYDVYDL---ELTSV---ENN 266
E + + K G +G L +GPPG GK+ + A+AN + + EL ++ E+
Sbjct: 497 VEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQANFISIKGPELLTMWFGESE 556
Query: 267 NELRSLL---------------VDISSKKKK---------SNVTLSGLLNCIGGLWSTCG 302
+R + +D +K + ++ ++ +L + G+ +
Sbjct: 557 ANVREIFDKARQAAPCVLFFDELDSIAKARGGNIGDGGGAADRVINQILTEMDGMSTK-- 614
Query: 303 GERIIVFTTNHVDKLDPALIRRGRMDKHIEMP 334
I+ TN D +DPA++R GR+D+ I +P
Sbjct: 615 KNVFIIGATNRPDIIDPAILRPGRLDQLIYIP 646
>pdb|1E32|A Chain A, Structure Of The N-Terminal Domain And The D1 Aaa Domain
Of Membrane Fusion Atpase P97
pdb|1S3S|A Chain A, Crystal Structure Of Aaa Atpase P97VCP ND1 IN COMPLEX WITH
P47 C
pdb|1S3S|B Chain B, Crystal Structure Of Aaa Atpase P97VCP ND1 IN COMPLEX WITH
P47 C
pdb|1S3S|C Chain C, Crystal Structure Of Aaa Atpase P97VCP ND1 IN COMPLEX WITH
P47 C
pdb|1S3S|D Chain D, Crystal Structure Of Aaa Atpase P97VCP ND1 IN COMPLEX WITH
P47 C
pdb|1S3S|E Chain E, Crystal Structure Of Aaa Atpase P97VCP ND1 IN COMPLEX WITH
P47 C
pdb|1S3S|F Chain F, Crystal Structure Of Aaa Atpase P97VCP ND1 IN COMPLEX WITH
P47 C
Length = 458
Score = 48.1 bits (113), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 41/142 (28%), Positives = 68/142 (47%), Gaps = 29/142 (20%)
Query: 219 YAKIGKAWKRGYLLFGPPGTGKSTMIAAMAN---CLNYDVYDLELTSV---ENNNELRS- 271
+ IG RG LL+GPPGTGK+ + A+AN + + E+ S E+ + LR
Sbjct: 230 FKAIGVKPPRGILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKA 289
Query: 272 -----------LLVD----ISSKKKKSN-----VTLSGLLNCIGGLWSTCGGERIIVFTT 311
+ +D I+ K++K++ +S LL + GL I++ T
Sbjct: 290 FEEAEKNAPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQR--AHVIVMAAT 347
Query: 312 NHVDKLDPALIRRGRMDKHIEM 333
N + +DPAL R GR D+ +++
Sbjct: 348 NRPNSIDPALRRFGRFDREVDI 369
>pdb|3HU2|A Chain A, Structure Of P97 N-D1 R86a Mutant In Complex With Atpgs
pdb|3HU2|B Chain B, Structure Of P97 N-D1 R86a Mutant In Complex With Atpgs
pdb|3HU2|C Chain C, Structure Of P97 N-D1 R86a Mutant In Complex With Atpgs
pdb|3HU2|D Chain D, Structure Of P97 N-D1 R86a Mutant In Complex With Atpgs
pdb|3HU2|E Chain E, Structure Of P97 N-D1 R86a Mutant In Complex With Atpgs
pdb|3HU2|F Chain F, Structure Of P97 N-D1 R86a Mutant In Complex With Atpgs
Length = 489
Score = 48.1 bits (113), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 41/143 (28%), Positives = 68/143 (47%), Gaps = 29/143 (20%)
Query: 218 YYAKIGKAWKRGYLLFGPPGTGKSTMIAAMAN---CLNYDVYDLELTSV---ENNNELRS 271
+ IG RG LL+GPPGTGK+ + A+AN + + E+ S E+ + LR
Sbjct: 229 LFKAIGVKPPRGILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRK 288
Query: 272 ------------LLVD----ISSKKKKSN-----VTLSGLLNCIGGLWSTCGGERIIVFT 310
+ +D I+ K++K++ +S LL + GL I++
Sbjct: 289 AFEEAEKNAPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQR--AHVIVMAA 346
Query: 311 TNHVDKLDPALIRRGRMDKHIEM 333
TN + +DPAL R GR D+ +++
Sbjct: 347 TNRPNSIDPALRRFGRFDREVDI 369
>pdb|3HU3|A Chain A, Structure Of P97 N-D1 R155h Mutant In Complex With Atpgs
pdb|3HU3|B Chain B, Structure Of P97 N-D1 R155h Mutant In Complex With Atpgs
Length = 489
Score = 48.1 bits (113), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 41/142 (28%), Positives = 68/142 (47%), Gaps = 29/142 (20%)
Query: 219 YAKIGKAWKRGYLLFGPPGTGKSTMIAAMAN---CLNYDVYDLELTSV---ENNNELRS- 271
+ IG RG LL+GPPGTGK+ + A+AN + + E+ S E+ + LR
Sbjct: 230 FKAIGVKPPRGILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKA 289
Query: 272 -----------LLVD----ISSKKKKSN-----VTLSGLLNCIGGLWSTCGGERIIVFTT 311
+ +D I+ K++K++ +S LL + GL I++ T
Sbjct: 290 FEEAEKNAPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQR--AHVIVMAAT 347
Query: 312 NHVDKLDPALIRRGRMDKHIEM 333
N + +DPAL R GR D+ +++
Sbjct: 348 NRPNSIDPALRRFGRFDREVDI 369
>pdb|3HU1|A Chain A, Structure Of P97 N-D1 R95g Mutant In Complex With Atpgs
pdb|3HU1|B Chain B, Structure Of P97 N-D1 R95g Mutant In Complex With Atpgs
pdb|3HU1|C Chain C, Structure Of P97 N-D1 R95g Mutant In Complex With Atpgs
pdb|3HU1|D Chain D, Structure Of P97 N-D1 R95g Mutant In Complex With Atpgs
pdb|3HU1|E Chain E, Structure Of P97 N-D1 R95g Mutant In Complex With Atpgs
pdb|3HU1|F Chain F, Structure Of P97 N-D1 R95g Mutant In Complex With Atpgs
Length = 489
Score = 48.1 bits (113), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 41/143 (28%), Positives = 68/143 (47%), Gaps = 29/143 (20%)
Query: 218 YYAKIGKAWKRGYLLFGPPGTGKSTMIAAMAN---CLNYDVYDLELTSV---ENNNELRS 271
+ IG RG LL+GPPGTGK+ + A+AN + + E+ S E+ + LR
Sbjct: 229 LFKAIGVKPPRGILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRK 288
Query: 272 ------------LLVD----ISSKKKKSN-----VTLSGLLNCIGGLWSTCGGERIIVFT 310
+ +D I+ K++K++ +S LL + GL I++
Sbjct: 289 AFEEAEKNAPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQR--AHVIVMAA 346
Query: 311 TNHVDKLDPALIRRGRMDKHIEM 333
TN + +DPAL R GR D+ +++
Sbjct: 347 TNRPNSIDPALRRFGRFDREVDI 369
>pdb|3KDS|E Chain E, Apo-ftsh Crystal Structure
pdb|3KDS|F Chain F, Apo-ftsh Crystal Structure
pdb|3KDS|G Chain G, Apo-ftsh Crystal Structure
Length = 465
Score = 47.8 bits (112), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 42/150 (28%), Positives = 62/150 (41%), Gaps = 32/150 (21%)
Query: 212 FTEGKEYYAKIGKAWKRGYLLFGPPGTGKSTMIAAMANCLNYDVYDL------ELTSVEN 265
F + + +IG +G LL GPPGTG + + A+A N + + EL
Sbjct: 34 FLKDPSKFNRIGARMPKGILLVGPPGTGATLLARAVAGEANVPFFHISGSDFVELFVGVG 93
Query: 266 NNELRSLL---------------VDISSKKKKSNV---------TLSGLLNCIGGLWSTC 301
+R L +D + + + + TL+ LL + G S
Sbjct: 94 AARVRDLFAQAKAHAPCIVFIDEIDAVGRHRGAGLGGGHDEREQTLNQLLVEMDGFDSKE 153
Query: 302 GGERIIVFTTNHVDKLDPALIRRGRMDKHI 331
G I++ TN D LDPAL+R GR DK I
Sbjct: 154 G--IIVMAATNRPDILDPALLRPGRFDKKI 181
>pdb|1LV7|A Chain A, Crystal Structure Of The Aaa Domain Of Ftsh
Length = 257
Score = 45.8 bits (107), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 34/143 (23%), Positives = 61/143 (42%), Gaps = 32/143 (22%)
Query: 219 YAKIGKAWKRGYLLFGPPGTGKSTMIAAMANCLNYDVYDL------ELTSVENNNELRSL 272
+ K+G +G L+ GPPGTGK+ + A+A + + E+ + +R +
Sbjct: 37 FQKLGGKIPKGVLMVGPPGTGKTLLAKAIAGEAKVPFFTISGSDFVEMFVGVGASRVRDM 96
Query: 273 L---------------VDISSKKKKSNV---------TLSGLLNCIGGLWSTCGGERIIV 308
+D +++ + + TL+ +L + G G I++
Sbjct: 97 FEQAKKAAPCIIFIDEIDAVGRQRGAGLGGGHDEREQTLNQMLVEMDGFEGNEG--IIVI 154
Query: 309 FTTNHVDKLDPALIRRGRMDKHI 331
TN D LDPAL+R GR D+ +
Sbjct: 155 AATNRPDVLDPALLRPGRFDRQV 177
>pdb|2DHR|A Chain A, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|2DHR|B Chain B, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|2DHR|C Chain C, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|2DHR|D Chain D, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|2DHR|E Chain E, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|2DHR|F Chain F, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
Length = 499
Score = 43.1 bits (100), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 38/152 (25%), Positives = 60/152 (39%), Gaps = 32/152 (21%)
Query: 212 FTEGKEYYAKIGKAWKRGYLLFGPPGTGKSTMIAAMANCLNYDVYD------LELTSVEN 265
F + + ++G +G LL GPPG GK+ + A+A +E+
Sbjct: 49 FLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEARVPFITASGSDFVEMFVGVG 108
Query: 266 NNELRSLL---------------VDISSKKKKSNV---------TLSGLLNCIGGLWSTC 301
+R L +D +K+ S V TL+ LL + G
Sbjct: 109 AARVRDLFETAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMDGFEKDT 168
Query: 302 GGERIIVFTTNHVDKLDPALIRRGRMDKHIEM 333
+++ TN D LDPAL+R GR D+ I +
Sbjct: 169 A--IVVMAATNRPDILDPALLRPGRFDRQIAI 198
>pdb|4EIW|A Chain A, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|4EIW|B Chain B, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|4EIW|C Chain C, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|4EIW|D Chain D, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|4EIW|E Chain E, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|4EIW|F Chain F, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
Length = 508
Score = 43.1 bits (100), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 38/152 (25%), Positives = 60/152 (39%), Gaps = 32/152 (21%)
Query: 212 FTEGKEYYAKIGKAWKRGYLLFGPPGTGKSTMIAAMANCLNYDVYD------LELTSVEN 265
F + + ++G +G LL GPPG GK+ + A+A +E+
Sbjct: 58 FLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEARVPFITASGSDFVEMFVGVG 117
Query: 266 NNELRSLL---------------VDISSKKKKSNV---------TLSGLLNCIGGLWSTC 301
+R L +D +K+ S V TL+ LL + G
Sbjct: 118 AARVRDLFETAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMDGFEKDT 177
Query: 302 GGERIIVFTTNHVDKLDPALIRRGRMDKHIEM 333
+++ TN D LDPAL+R GR D+ I +
Sbjct: 178 A--IVVMAATNRPDILDPALLRPGRFDRQIAI 207
>pdb|3CF0|A Chain A, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|B Chain B, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|C Chain C, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|D Chain D, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|E Chain E, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|F Chain F, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|G Chain G, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|H Chain H, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|I Chain I, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|J Chain J, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|K Chain K, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|L Chain L, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|M Chain M, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|N Chain N, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
Length = 301
Score = 42.4 bits (98), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 35/152 (23%), Positives = 67/152 (44%), Gaps = 32/152 (21%)
Query: 213 TEGKEYYAKIGKAWKRGYLLFGPPGTGKSTMIAAMANCLNYDVYDL---ELTSV---ENN 266
E + + K G +G L +GPPG GK+ + A+AN + + EL ++ E+
Sbjct: 35 VEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQANFISIKGPELLTMWFGESE 94
Query: 267 NELRSLL---------------VDISSKKKK---------SNVTLSGLLNCIGGLWSTCG 302
+R + +D +K + ++ ++ +L + G+ +
Sbjct: 95 ANVREIFDKARQAAPCVLFFDELDSIAKARGGNIGDGGGAADRVINQILTEMDGM--STK 152
Query: 303 GERIIVFTTNHVDKLDPALIRRGRMDKHIEMP 334
I+ TN D +DPA++R GR+D+ I +P
Sbjct: 153 KNVFIIGATNRPDIIDPAILRPGRLDQLIYIP 184
>pdb|1IY2|A Chain A, Crystal Structure Of The Ftsh Atpase Domain From Thermus
Thermophilus
Length = 278
Score = 42.4 bits (98), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 38/152 (25%), Positives = 60/152 (39%), Gaps = 32/152 (21%)
Query: 212 FTEGKEYYAKIGKAWKRGYLLFGPPGTGKSTMIAAMANCLNYDVYD------LELTSVEN 265
F + + ++G +G LL GPPG GK+ + A+A +E+
Sbjct: 58 FLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEARVPFITASGSDFVEMFVGVG 117
Query: 266 NNELRSLL---------------VDISSKKKKSNV---------TLSGLLNCIGGLWSTC 301
+R L +D +K+ S V TL+ LL + G
Sbjct: 118 AARVRDLFETAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMDGFEKDT 177
Query: 302 GGERIIVFTTNHVDKLDPALIRRGRMDKHIEM 333
+++ TN D LDPAL+R GR D+ I +
Sbjct: 178 A--IVVMAATNRPDILDPALLRPGRFDRQIAI 207
>pdb|1IXZ|A Chain A, Crystal Structure Of The Ftsh Atpase Domain From Thermus
Thermophilus
pdb|1IY0|A Chain A, Crystal Structure Of The Ftsh Atpase Domain With Amp-Pnp
From Thermus Thermophilus
pdb|1IY1|A Chain A, Crystal Structure Of The Ftsh Atpase Domain With Adp From
Thermus Thermophilus
Length = 254
Score = 42.0 bits (97), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 38/152 (25%), Positives = 60/152 (39%), Gaps = 32/152 (21%)
Query: 212 FTEGKEYYAKIGKAWKRGYLLFGPPGTGKSTMIAAMANCLNYDVYD------LELTSVEN 265
F + + ++G +G LL GPPG GK+ + A+A +E+
Sbjct: 34 FLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEARVPFITASGSDFVEMFVGVG 93
Query: 266 NNELRSLL---------------VDISSKKKKSNV---------TLSGLLNCIGGLWSTC 301
+R L +D +K+ S V TL+ LL + G
Sbjct: 94 AARVRDLFETAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMDGFEKDT 153
Query: 302 GGERIIVFTTNHVDKLDPALIRRGRMDKHIEM 333
+++ TN D LDPAL+R GR D+ I +
Sbjct: 154 A--IVVMAATNRPDILDPALLRPGRFDRQIAI 183
>pdb|2X8A|A Chain A, Human Nuclear Valosin Containing Protein Like (Nvl), C-
Terminal Aaa-Atpase Domain
Length = 274
Score = 41.6 bits (96), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 39/142 (27%), Positives = 64/142 (45%), Gaps = 29/142 (20%)
Query: 217 EYYAKIGKAWKRGYLLFGPPGTGKSTMIAAMAN--CLNY-DVYDLELTSV---ENNNELR 270
+ + +G G LL GPPG GK+ + A+AN LN+ V EL ++ E+ +R
Sbjct: 34 DQFKALGLVTPAGVLLAGPPGCGKTLLAKAVANESGLNFISVKGPELLNMYVGESERAVR 93
Query: 271 SLL---------------VDISSKKKKSNVT------LSGLLNCIGGLWSTCGGERIIVF 309
+ VD ++ T ++ LL + GL + + I+
Sbjct: 94 QVFQRAKNSAPCVIFFDEVDALCPRRSDRETGASVRVVNQLLTEMDGLEAR--QQVFIMA 151
Query: 310 TTNHVDKLDPALIRRGRMDKHI 331
TN D +DPA++R GR+DK +
Sbjct: 152 ATNRPDIIDPAILRPGRLDKTL 173
>pdb|3VFD|A Chain A, Human Spastin Aaa Domain
Length = 389
Score = 37.7 bits (86), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 36/129 (27%), Positives = 59/129 (45%), Gaps = 29/129 (22%)
Query: 224 KAWKRGYLLFGPPGTGKSTM---IAAMANCLNYDVYDLELTS--VENNNELRSLLVDISS 278
+A RG LLFGPPG GK+ + +AA +N +++ LTS V +L L ++
Sbjct: 145 RAPARGLLLFGPPGNGKTMLAKAVAAESNATFFNISAASLTSKYVGEGEKLVRALFAVAR 204
Query: 279 KKKKSNVTLSGL--LNC--------------------IGGLWSTCGGERIIVF-TTNHVD 315
+ + S + + + L C G+ S G +R++V TN
Sbjct: 205 ELQPSIIFIDQVDSLLCERREGEHDASRRLKTEFLIEFDGVQS-AGDDRVLVMGATNRPQ 263
Query: 316 KLDPALIRR 324
+LD A++RR
Sbjct: 264 ELDEAVLRR 272
>pdb|3B9P|A Chain A, Spastin
Length = 297
Score = 37.4 bits (85), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 36/139 (25%), Positives = 56/139 (40%), Gaps = 28/139 (20%)
Query: 224 KAWKRGYLLFGPPGTGKSTMIAAMAN-C----LNYDVYDLELTSVENNNELRSLLVDISS 278
+A +G LLFGPPG GK+ + A+A C LN L V + +L L ++
Sbjct: 51 RAPAKGLLLFGPPGNGKTLLARAVATECSATFLNISAASLTSKYVGDGEKLVRALFAVAR 110
Query: 279 KKKKSNVTL----------------------SGLLNCIGGLWSTCGGERIIVFT-TNHVD 315
+ S + + + L GL G+RI+V TN
Sbjct: 111 HMQPSIIFIDEVDSLLSERSSSEHEASRRLKTEFLVEFDGLPGNPDGDRIVVLAATNRPQ 170
Query: 316 KLDPALIRRGRMDKHIEMP 334
+LD A +RR ++ +P
Sbjct: 171 ELDEAALRRFTKRVYVSLP 189
>pdb|2ZAM|A Chain A, Crystal Structure Of Mouse Skd1VPS4B APO-Form
pdb|2ZAN|A Chain A, Crystal Structure Of Mouse Skd1VPS4B ATP-Form
pdb|2ZAO|A Chain A, Crystal Structure Of Mouse Skd1VPS4B ADP-Form
Length = 444
Score = 37.0 bits (84), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 16/29 (55%), Positives = 19/29 (65%)
Query: 228 RGYLLFGPPGTGKSTMIAAMANCLNYDVY 256
RG LLFGPPGTGKS + A+A N +
Sbjct: 168 RGILLFGPPGTGKSYLAKAVATEANNSTF 196
>pdb|1SXJ|A Chain A, Crystal Structure Of The Eukaryotic Clamp Loader
(Replication Factor C, Rfc) Bound To The Dna Sliding
Clamp (Proliferating Cell Nuclear Antigen, Pcna)
Length = 516
Score = 36.6 bits (83), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 22/74 (29%), Positives = 39/74 (52%), Gaps = 7/74 (9%)
Query: 217 EYYAKIGKAWKRGYLLFGPPGTGKSTMIAAMANCLNYDVYDLELTSVENNNELRS-LLVD 275
++ K G R +L+GPPG GK+T +A L YD+ + +N +++RS L++
Sbjct: 67 KHAGKDGSGVFRAAMLYGPPGIGKTTAAHLVAQELGYDILE------QNASDVRSKTLLN 120
Query: 276 ISSKKKKSNVTLSG 289
K N+++ G
Sbjct: 121 AGVKNALDNMSVVG 134
>pdb|1XWI|A Chain A, Crystal Structure Of Vps4b
Length = 322
Score = 36.6 bits (83), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 16/29 (55%), Positives = 19/29 (65%)
Query: 228 RGYLLFGPPGTGKSTMIAAMANCLNYDVY 256
RG LLFGPPGTGKS + A+A N +
Sbjct: 46 RGILLFGPPGTGKSYLAKAVATEANNSTF 74
>pdb|1KAG|A Chain A, Crystal Structure Of The Escherichia Coli Shikimate Kinase
I (Arok)
pdb|1KAG|B Chain B, Crystal Structure Of The Escherichia Coli Shikimate Kinase
I (Arok)
Length = 173
Score = 35.0 bits (79), Expect = 0.074, Method: Compositional matrix adjust.
Identities = 16/33 (48%), Positives = 19/33 (57%)
Query: 225 AWKRGYLLFGPPGTGKSTMIAAMANCLNYDVYD 257
A KR L GP G GKST+ +A LN + YD
Sbjct: 2 AEKRNIFLVGPMGAGKSTIGRQLAQQLNMEFYD 34
>pdb|3M6A|A Chain A, Crystal Structure Of Bacillus Subtilis Lon C-Terminal
Domain
pdb|3M6A|B Chain B, Crystal Structure Of Bacillus Subtilis Lon C-Terminal
Domain
pdb|3M6A|C Chain C, Crystal Structure Of Bacillus Subtilis Lon C-Terminal
Domain
pdb|3M6A|D Chain D, Crystal Structure Of Bacillus Subtilis Lon C-Terminal
Domain
pdb|3M6A|E Chain E, Crystal Structure Of Bacillus Subtilis Lon C-Terminal
Domain
pdb|3M6A|F Chain F, Crystal Structure Of Bacillus Subtilis Lon C-Terminal
Domain
Length = 543
Score = 34.3 bits (77), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 20/57 (35%), Positives = 31/57 (54%), Gaps = 3/57 (5%)
Query: 217 EYYA--KIGKAWKRGYL-LFGPPGTGKSTMIAAMANCLNYDVYDLELTSVENNNELR 270
EY A K+ K+ K L L GPPG GK+++ ++A L + L V + +E+R
Sbjct: 95 EYLAVQKLTKSLKGPILCLAGPPGVGKTSLAKSIAKSLGRKFVRISLGGVRDESEIR 151
>pdb|1IXS|B Chain B, Structure Of Ruvb Complexed With Ruva Domain Iii
Length = 318
Score = 33.9 bits (76), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 15/45 (33%), Positives = 27/45 (60%)
Query: 231 LLFGPPGTGKSTMIAAMANCLNYDVYDLELTSVENNNELRSLLVD 275
LLFGPPG GK+T+ +A+ L ++ ++E +L ++L +
Sbjct: 42 LLFGPPGLGKTTLAHVIAHELGVNLRVTSGPAIEKPGDLAAILAN 86
>pdb|1HQC|A Chain A, Structure Of Ruvb From Thermus Thermophilus Hb8
pdb|1HQC|B Chain B, Structure Of Ruvb From Thermus Thermophilus Hb8
Length = 324
Score = 33.9 bits (76), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 19/60 (31%), Positives = 32/60 (53%), Gaps = 3/60 (5%)
Query: 219 YAKIGKAWKRGY---LLFGPPGTGKSTMIAAMANCLNYDVYDLELTSVENNNELRSLLVD 275
Y + KA K LLFGPPG GK+T+ +A+ L ++ ++E +L ++L +
Sbjct: 27 YLEAAKARKEPLEHLLLFGPPGLGKTTLAHVIAHELGVNLRVTSGPAIEKPGDLAAILAN 86
>pdb|1IXR|C Chain C, Ruva-Ruvb Complex
Length = 312
Score = 33.9 bits (76), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 15/45 (33%), Positives = 27/45 (60%)
Query: 231 LLFGPPGTGKSTMIAAMANCLNYDVYDLELTSVENNNELRSLLVD 275
LLFGPPG GK+T+ +A+ L ++ ++E +L ++L +
Sbjct: 42 LLFGPPGLGKTTLAHVIAHELGVNLRVTSGPAIEKPGDLAAILAN 86
>pdb|1SXJ|C Chain C, Crystal Structure Of The Eukaryotic Clamp Loader
(Replication Factor C, Rfc) Bound To The Dna Sliding
Clamp (Proliferating Cell Nuclear Antigen, Pcna)
Length = 340
Score = 33.9 bits (76), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 19/56 (33%), Positives = 34/56 (60%), Gaps = 5/56 (8%)
Query: 231 LLFGPPGTGKSTMIAAMANCL---NYDVYDLELTSVENN--NELRSLLVDISSKKK 281
L +GPPGTGK++ I A+A + NY LEL + ++ + +R+ + D +S ++
Sbjct: 50 LFYGPPGTGKTSTIVALAREIYGKNYSNMVLELNASDDRGIDVVRNQIKDFASTRQ 105
>pdb|3UK6|A Chain A, Crystal Structure Of The Tip48 (Tip49b) Hexamer
pdb|3UK6|B Chain B, Crystal Structure Of The Tip48 (Tip49b) Hexamer
pdb|3UK6|C Chain C, Crystal Structure Of The Tip48 (Tip49b) Hexamer
pdb|3UK6|D Chain D, Crystal Structure Of The Tip48 (Tip49b) Hexamer
pdb|3UK6|E Chain E, Crystal Structure Of The Tip48 (Tip49b) Hexamer
pdb|3UK6|F Chain F, Crystal Structure Of The Tip48 (Tip49b) Hexamer
pdb|3UK6|G Chain G, Crystal Structure Of The Tip48 (Tip49b) Hexamer
pdb|3UK6|H Chain H, Crystal Structure Of The Tip48 (Tip49b) Hexamer
pdb|3UK6|I Chain I, Crystal Structure Of The Tip48 (Tip49b) Hexamer
pdb|3UK6|J Chain J, Crystal Structure Of The Tip48 (Tip49b) Hexamer
pdb|3UK6|K Chain K, Crystal Structure Of The Tip48 (Tip49b) Hexamer
pdb|3UK6|L Chain L, Crystal Structure Of The Tip48 (Tip49b) Hexamer
Length = 368
Score = 33.5 bits (75), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 17/52 (32%), Positives = 24/52 (46%), Gaps = 10/52 (19%)
Query: 223 GKAWKRGYLLFGPPGTGKSTMIAAMANCLNYD----------VYDLELTSVE 264
GK R L+ G PGTGK+ + MA L D ++ LE++ E
Sbjct: 66 GKIAGRAVLIAGQPGTGKTAIAMGMAQALGPDTPFTAIAGSEIFSLEMSKTE 117
>pdb|3PVS|A Chain A, Structure And Biochemical Activities Of Escherichia Coli
Mgsa
pdb|3PVS|B Chain B, Structure And Biochemical Activities Of Escherichia Coli
Mgsa
pdb|3PVS|C Chain C, Structure And Biochemical Activities Of Escherichia Coli
Mgsa
pdb|3PVS|D Chain D, Structure And Biochemical Activities Of Escherichia Coli
Mgsa
Length = 447
Score = 33.1 bits (74), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 17/49 (34%), Positives = 25/49 (51%), Gaps = 8/49 (16%)
Query: 215 GKEYYAKIGKAWKRG--------YLLFGPPGTGKSTMIAAMANCLNYDV 255
G+++ GK R +L+GPPGTGK+T+ +A N DV
Sbjct: 30 GQQHLLAAGKPLPRAIEAGHLHSMILWGPPGTGKTTLAEVIARYANADV 78
>pdb|3K1J|A Chain A, Crystal Structure Of Lon Protease From Thermococcus
Onnurineus Na1
pdb|3K1J|B Chain B, Crystal Structure Of Lon Protease From Thermococcus
Onnurineus Na1
Length = 604
Score = 33.1 bits (74), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 18/46 (39%), Positives = 25/46 (54%), Gaps = 3/46 (6%)
Query: 215 GKEYYAKIGKA---WKRGYLLFGPPGTGKSTMIAAMANCLNYDVYD 257
G+E+ ++ K KR LL G PGTGKS + AMA L + +
Sbjct: 45 GQEHAVEVIKTAANQKRHVLLIGEPGTGKSMLGQAMAELLPTETLE 90
>pdb|2QP9|X Chain X, Crystal Structure Of S.Cerevisiae Vps4
pdb|2QPA|A Chain A, Crystal Structure Of S.Cerevisiae Vps4 In The Presence Of
Adp
pdb|2QPA|B Chain B, Crystal Structure Of S.Cerevisiae Vps4 In The Presence Of
Adp
pdb|2QPA|C Chain C, Crystal Structure Of S.Cerevisiae Vps4 In The Presence Of
Adp
Length = 355
Score = 32.7 bits (73), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 14/24 (58%), Positives = 17/24 (70%)
Query: 229 GYLLFGPPGTGKSTMIAAMANCLN 252
G LL+GPPGTGKS + A+A N
Sbjct: 86 GILLYGPPGTGKSYLAKAVATEAN 109
>pdb|2XSZ|A Chain A, The Dodecameric Human Ruvbl1:ruvbl2 Complex With Truncated
Domains Ii
pdb|2XSZ|B Chain B, The Dodecameric Human Ruvbl1:ruvbl2 Complex With Truncated
Domains Ii
pdb|2XSZ|C Chain C, The Dodecameric Human Ruvbl1:ruvbl2 Complex With Truncated
Domains Ii
Length = 367
Score = 32.7 bits (73), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 15/32 (46%), Positives = 18/32 (56%)
Query: 224 KAWKRGYLLFGPPGTGKSTMIAAMANCLNYDV 255
K R LL GPPGTGK+ + A+A L V
Sbjct: 74 KXAGRAVLLAGPPGTGKTALALAIAQELGSKV 105
>pdb|3JVV|A Chain A, Crystal Structure Of P. Aeruginosa Pilt With Bound Amp-Pcp
pdb|3JVV|B Chain B, Crystal Structure Of P. Aeruginosa Pilt With Bound Amp-Pcp
pdb|3JVV|C Chain C, Crystal Structure Of P. Aeruginosa Pilt With Bound Amp-Pcp
pdb|3JVU|A Chain A, Crystal Structure Of Unliganded P. Aeruginosa Pilt
pdb|3JVU|B Chain B, Crystal Structure Of Unliganded P. Aeruginosa Pilt
pdb|3JVU|C Chain C, Crystal Structure Of Unliganded P. Aeruginosa Pilt
Length = 356
Score = 32.7 bits (73), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 15/40 (37%), Positives = 23/40 (57%)
Query: 217 EYYAKIGKAWKRGYLLFGPPGTGKSTMIAAMANCLNYDVY 256
E + ++ + L+ GP G+GKST +AAM + LN Y
Sbjct: 113 EVFKRVSDVPRGLVLVTGPTGSGKSTTLAAMLDYLNNTKY 152
>pdb|3QMZ|A Chain A, Crystal Structure Of The Cytoplasmic Dynein Heavy Chain
Motor Domain
pdb|3QMZ|B Chain B, Crystal Structure Of The Cytoplasmic Dynein Heavy Chain
Motor Domain
Length = 2486
Score = 32.7 bits (73), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 15/30 (50%), Positives = 21/30 (70%), Gaps = 1/30 (3%)
Query: 227 KRGYLLFGPPGTGKSTMI-AAMANCLNYDV 255
KRG +L GPPG+GK+ ++ A+ N YDV
Sbjct: 1048 KRGIILCGPPGSGKTMIMNNALRNSSLYDV 1077
>pdb|4AI6|A Chain A, Dynein Motor Domain - Adp Complex
pdb|4AI6|B Chain B, Dynein Motor Domain - Adp Complex
pdb|4AKG|A Chain A, Dynein Motor Domain - Atp Complex
pdb|4AKG|B Chain B, Dynein Motor Domain - Atp Complex
pdb|4AKH|A Chain A, Dynein Motor Domain - Amppnp Complex
pdb|4AKH|B Chain B, Dynein Motor Domain - Amppnp Complex
pdb|4AKI|A Chain A, Dynein Motor Domain - Luac Derivative
pdb|4AKI|B Chain B, Dynein Motor Domain - Luac Derivative
Length = 2695
Score = 32.7 bits (73), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 15/30 (50%), Positives = 21/30 (70%), Gaps = 1/30 (3%)
Query: 227 KRGYLLFGPPGTGKSTMI-AAMANCLNYDV 255
KRG +L GPPG+GK+ ++ A+ N YDV
Sbjct: 1267 KRGIILCGPPGSGKTMIMNNALRNSSLYDV 1296
>pdb|3EIH|A Chain A, Crystal Structure Of S.Cerevisiae Vps4 In The Presence Of
Atpgammas
pdb|3EIH|B Chain B, Crystal Structure Of S.Cerevisiae Vps4 In The Presence Of
Atpgammas
pdb|3EIH|C Chain C, Crystal Structure Of S.Cerevisiae Vps4 In The Presence Of
Atpgammas
Length = 340
Score = 32.7 bits (73), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 14/24 (58%), Positives = 17/24 (70%)
Query: 229 GYLLFGPPGTGKSTMIAAMANCLN 252
G LL+GPPGTGKS + A+A N
Sbjct: 71 GILLYGPPGTGKSYLAKAVATEAN 94
>pdb|3EIE|A Chain A, Crystal Structure Of S.Cerevisiae Vps4 In The So4-Bound
State
Length = 322
Score = 32.3 bits (72), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 14/24 (58%), Positives = 17/24 (70%)
Query: 229 GYLLFGPPGTGKSTMIAAMANCLN 252
G LL+GPPGTGKS + A+A N
Sbjct: 53 GILLYGPPGTGKSYLAKAVATEAN 76
>pdb|2RKO|A Chain A, Crystal Structure Of The Vps4p-Dimer
Length = 331
Score = 32.3 bits (72), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 14/24 (58%), Positives = 17/24 (70%)
Query: 229 GYLLFGPPGTGKSTMIAAMANCLN 252
G LL+GPPGTGKS + A+A N
Sbjct: 62 GILLYGPPGTGKSYLAKAVATEAN 85
>pdb|2C9O|A Chain A, 3d Structure Of The Human Ruvb-Like Helicase Ruvbl1
pdb|2C9O|B Chain B, 3d Structure Of The Human Ruvb-Like Helicase Ruvbl1
pdb|2C9O|C Chain C, 3d Structure Of The Human Ruvb-Like Helicase Ruvbl1
Length = 456
Score = 32.3 bits (72), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 15/32 (46%), Positives = 18/32 (56%)
Query: 224 KAWKRGYLLFGPPGTGKSTMIAAMANCLNYDV 255
K R LL GPPGTGK+ + A+A L V
Sbjct: 60 KMAGRAVLLAGPPGTGKTALALAIAQELGSKV 91
>pdb|3D8B|A Chain A, Crystal Structure Of Human Fidgetin-Like Protein 1 In
Complex With Adp
pdb|3D8B|B Chain B, Crystal Structure Of Human Fidgetin-Like Protein 1 In
Complex With Adp
Length = 357
Score = 32.3 bits (72), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 16/38 (42%), Positives = 23/38 (60%), Gaps = 3/38 (7%)
Query: 228 RGYLLFGPPGTGKSTM---IAAMANCLNYDVYDLELTS 262
+G LLFGPPGTGK+ + IA+ + + + LTS
Sbjct: 118 KGILLFGPPGTGKTLIGKCIASQSGATFFSISASSLTS 155
>pdb|2EWV|A Chain A, Crystal Structure Of The Pilus Retraction Motor Pilt And
Bound Adp
Length = 372
Score = 29.6 bits (65), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 12/22 (54%), Positives = 17/22 (77%)
Query: 231 LLFGPPGTGKSTMIAAMANCLN 252
L+ GP G+GKST IA+M + +N
Sbjct: 140 LVTGPTGSGKSTTIASMIDYIN 161
>pdb|2F24|A Chain A, Crystal Structure Of The Human Sialidase Neu2 E111q Mutant
pdb|2F25|A Chain A, Crystal Structure Of The Human Sialidase Neu2 E111q Mutant
In Complex With Dana Inhibitor
pdb|2F25|B Chain B, Crystal Structure Of The Human Sialidase Neu2 E111q Mutant
In Complex With Dana Inhibitor
Length = 382
Score = 28.9 bits (63), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 12/30 (40%), Positives = 21/30 (70%)
Query: 67 AYSEIQSYLSGREETSLHASRFKADDYEEV 96
AYS++QS +G + + L ++A+DYEE+
Sbjct: 335 AYSDLQSMGTGPDGSPLFGCLYEANDYEEI 364
>pdb|1SNT|A Chain A, Structure Of The Human Cytosolic Sialidase Neu2
pdb|1SO7|A Chain A, Maltose-Induced Structure Of The Human Cytolsolic
Sialidase Neu2
pdb|1VCU|A Chain A, Structure Of The Human Cytosolic Sialidase Neu2 In Complex
With The Inhibitor Dana
pdb|1VCU|B Chain B, Structure Of The Human Cytosolic Sialidase Neu2 In Complex
With The Inhibitor Dana
pdb|2F0Z|A Chain A, Crystal Structure Of The Human Sialidase Neu2 In Complex
With Zanamivir Inhibitor
pdb|2F10|A Chain A, Crystal Structure Of The Human Sialidase Neu2 In Complex
With Peramivir Inhibitor
pdb|2F11|A Chain A, Crystal Structure Of The Human Sialidase Neu2 In Complex
With Isobutyl Ether Mimetic Inhibitor
pdb|2F12|A Chain A, Crystal Structure Of The Human Sialidase Neu2 In Complex
With 3- Hydroxypropyl Ether Mimetic Inhibitor
pdb|2F13|A Chain A, Crystal Structure Of The Human Sialidase Neu2 In Complex
With 2',3'- Dihydroxypropyl Ether Mimetic Inhibitor
Length = 382
Score = 28.9 bits (63), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 12/30 (40%), Positives = 21/30 (70%)
Query: 67 AYSEIQSYLSGREETSLHASRFKADDYEEV 96
AYS++QS +G + + L ++A+DYEE+
Sbjct: 335 AYSDLQSMGTGPDGSPLFGCLYEANDYEEI 364
>pdb|2F26|A Chain A, Crystal Structure Of The Human Sialidase Neu2 E111q-Q112e
Double Mutant
pdb|2F27|A Chain A, Crystal Structure Of The Human Sialidase Neu2 E111q-Q112e
Double Mutant In Complex With Dana Inhibitor
pdb|2F27|B Chain B, Crystal Structure Of The Human Sialidase Neu2 E111q-Q112e
Double Mutant In Complex With Dana Inhibitor
Length = 382
Score = 28.9 bits (63), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 12/30 (40%), Positives = 21/30 (70%)
Query: 67 AYSEIQSYLSGREETSLHASRFKADDYEEV 96
AYS++QS +G + + L ++A+DYEE+
Sbjct: 335 AYSDLQSMGTGPDGSPLFGCLYEANDYEEI 364
>pdb|2F28|A Chain A, Crystal Structure Of The Human Sialidase Neu2 Q116e Mutant
pdb|2F29|A Chain A, Crystal Structure Of The Human Sialidase Neu2 Q116e Mutant
In Complex With Dana Inhibitor
pdb|2F29|B Chain B, Crystal Structure Of The Human Sialidase Neu2 Q116e Mutant
In Complex With Dana Inhibitor
Length = 382
Score = 28.9 bits (63), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 12/30 (40%), Positives = 21/30 (70%)
Query: 67 AYSEIQSYLSGREETSLHASRFKADDYEEV 96
AYS++QS +G + + L ++A+DYEE+
Sbjct: 335 AYSDLQSMGTGPDGSPLFGCLYEANDYEEI 364
>pdb|1G8P|A Chain A, Crystal Structure Of Bchi Subunit Of Magnesium Chelatase
pdb|2X31|G Chain G, Modelling Of The Complex Between Subunits Bchi And Bchd Of
Magnesium Chelatase Based On Single-Particle Cryo-Em
Reconstruction At 7.5 Ang
pdb|2X31|H Chain H, Modelling Of The Complex Between Subunits Bchi And Bchd Of
Magnesium Chelatase Based On Single-Particle Cryo-Em
Reconstruction At 7.5 Ang
pdb|2X31|I Chain I, Modelling Of The Complex Between Subunits Bchi And Bchd Of
Magnesium Chelatase Based On Single-Particle Cryo-Em
Reconstruction At 7.5 Ang
pdb|2X31|J Chain J, Modelling Of The Complex Between Subunits Bchi And Bchd Of
Magnesium Chelatase Based On Single-Particle Cryo-Em
Reconstruction At 7.5 Ang
pdb|2X31|K Chain K, Modelling Of The Complex Between Subunits Bchi And Bchd Of
Magnesium Chelatase Based On Single-Particle Cryo-Em
Reconstruction At 7.5 Ang
pdb|2X31|L Chain L, Modelling Of The Complex Between Subunits Bchi And Bchd Of
Magnesium Chelatase Based On Single-Particle Cryo-Em
Reconstruction At 7.5 Ang
Length = 350
Score = 28.9 bits (63), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 13/23 (56%), Positives = 16/23 (69%)
Query: 229 GYLLFGPPGTGKSTMIAAMANCL 251
G L+FG GTGKST + A+A L
Sbjct: 47 GVLVFGDRGTGKSTAVRALAALL 69
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.135 0.417
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 12,382,014
Number of Sequences: 62578
Number of extensions: 510912
Number of successful extensions: 1284
Number of sequences better than 100.0: 55
Number of HSP's better than 100.0 without gapping: 52
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 1200
Number of HSP's gapped (non-prelim): 79
length of query: 431
length of database: 14,973,337
effective HSP length: 102
effective length of query: 329
effective length of database: 8,590,381
effective search space: 2826235349
effective search space used: 2826235349
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 53 (25.0 bits)