BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 035603
(431 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9P6Q3|BCS1_SCHPO Probable mitochondrial chaperone bcs1 OS=Schizosaccharomyces pombe
(strain 972 / ATCC 24843) GN=SPAC644.07 PE=2 SV=1
Length = 449
Score = 100 bits (249), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 64/168 (38%), Positives = 93/168 (55%), Gaps = 27/168 (16%)
Query: 186 FEHPAT---FDTLAMASKKKEAIKKDLIKFTEGKEYYAKIGKAWKRGYLLFGPPGTGKST 242
F HP + ++ + S K+ I D+ F ++Y G ++RGYLL+GPPG+GK++
Sbjct: 198 FGHPRSKRMLSSVVLESNVKKMITDDVHDFLRNSQWYDTRGIPYRRGYLLYGPPGSGKTS 257
Query: 243 MIAAMANCLNYDVYDLELT----SVENNNELRS--------LLVDISSK---KKKS---- 283
+ A+A L+YD+ L L + + N L S LL D+ S +++S
Sbjct: 258 FLYALAGELDYDICVLNLAEKGLTDDRLNHLLSNVPPKAVVLLEDVDSAFQGRERSGEVG 317
Query: 284 ---NVTLSGLLNCIGGLWSTCGGERIIVFTTNHVDKLDPALIRRGRMD 328
NVT SGLLN + G+ T ERII TTNH +KLDPAL+R GR+D
Sbjct: 318 FHANVTFSGLLNALDGV--TSSDERIIFMTTNHPEKLDPALVRPGRVD 363
>sp|P32839|BCS1_YEAST Mitochondrial chaperone BCS1 OS=Saccharomyces cerevisiae (strain
ATCC 204508 / S288c) GN=BCS1 PE=1 SV=2
Length = 456
Score = 97.4 bits (241), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 80/263 (30%), Positives = 123/263 (46%), Gaps = 50/263 (19%)
Query: 132 TLTFHKRYRELITGEYVNQVLEEGKAIAVRNRQRKLYKNVPCQAWYEKKWSHVYFEHPAT 191
T+T YR+ + +L E K IA++ + K + +W F P
Sbjct: 171 TVTLTTLYRD---KHLFDDILNEAKDIALKTTEGKTV----IYTSFGPEWRK--FGQPKA 221
Query: 192 ---FDTLAMASKKKEAIKKDLIKFTEGKEYYAKIGKAWKRGYLLFGPPGTGKSTMIAAMA 248
++ + S KE I D+ F + ++Y+ G ++RGYLL+GPPG+GK++ I A+A
Sbjct: 222 KRMLPSVILDSGIKEGILDDVYDFMKNGKWYSDRGIPYRRGYLLYGPPGSGKTSFIQALA 281
Query: 249 NCLNYDV----------YDLELTSVENNNELRSLLV--DISSKKKK----------SNVT 286
L+Y++ D L + NN RS+L+ DI + K S+VT
Sbjct: 282 GELDYNICILNLSENNLTDDRLNHLMNNMPERSILLLEDIDAAFNKRSQTGEQGFHSSVT 341
Query: 287 LSGLLNCIGGLWSTCGGERIIVFTTNHVDKLDPALIRRGRMDKHIEMPYCCFEAFKVLAK 346
SGLLN + G+ T E I TTNH +KLD A++R GR+D +KV
Sbjct: 342 FSGLLNALDGV--TSSEETITFMTTNHPEKLDAAIMRPGRID------------YKVFVG 387
Query: 347 NYLEIESHELFHEIGSLLGETDI 369
N + ++F + GETDI
Sbjct: 388 NATPYQVEKMFMKF--YPGETDI 408
>sp|Q9CZP5|BCS1_MOUSE Mitochondrial chaperone BCS1 OS=Mus musculus GN=Bcs1l PE=1 SV=1
Length = 418
Score = 95.5 bits (236), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 76/259 (29%), Positives = 122/259 (47%), Gaps = 37/259 (14%)
Query: 151 VLEEGKAIAVRNRQRK--LYKNVPCQAWYEKKWSHVYFEHPATFDTLAMASKKKEAIKKD 208
+LEE +A+A++ + K +Y V + W + + + P D++ + + I KD
Sbjct: 150 ILEEARALALQQEEGKTVMYTAVGSE-W--RTFGYPRRRRP--LDSVVLQQGLADRIVKD 204
Query: 209 LIKFTEGKEYYAKIGKAWKRGYLLFGPPGTGKSTMIAAMANCLNYDVYDL---------- 258
+ +F + ++Y G ++RGYLL+GPPG GKS+ I A+A L + + L
Sbjct: 205 IREFIDNPKWYIDRGIPYRRGYLLYGPPGCGKSSFITALAGELEHSICLLSLTDSSLSDD 264
Query: 259 ---ELTSVENNNEL------------RSLLVDISSKKKK-SNVTLSGLLNCIGGLWSTCG 302
L SV L R L V+ K + +T SGLLN + G+ ST
Sbjct: 265 RLNHLLSVAPQQSLVLLEDVDAAFLSRDLAVENPIKYQGLGRLTFSGLLNALDGVASTEA 324
Query: 303 GERIIVFTTNHVDKLDPALIRRGRMDKHIEMPYCCFEAFKVLAKNYLEIESHELFHEIGS 362
RI+ TTN++D+LDPALIR GR+D + YC + + + ++ L
Sbjct: 325 --RIVFMTTNYIDRLDPALIRPGRVDLKEYVGYCSHWQLTQMFQRFYPGQAPSLAENFAE 382
Query: 363 --LLGETDITPADVAENLM 379
L ++I+PA V M
Sbjct: 383 HVLKATSEISPAQVQGYFM 401
>sp|Q54DY9|BCS1B_DICDI Probable mitochondrial chaperone BCS1-B OS=Dictyostelium discoideum
GN=bcsl1b PE=3 SV=1
Length = 458
Score = 94.4 bits (233), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 77/248 (31%), Positives = 121/248 (48%), Gaps = 59/248 (23%)
Query: 142 LITGEYVNQ-VLEEGKAIAVRNRQRK--LYKNVPCQAWYEKKWSHVYFEHPATFDTLAMA 198
L TG V Q ++EE K +A+ + K +Y ++ W +++ H + P + ++ +
Sbjct: 158 LGTGRQVFQNLIEEAKEMALEKEEGKTLIYTSMGTD-W--RRFGHPRRKRPIS--SVILD 212
Query: 199 SKKKEAIKKDLIKFTEGKEYYAKIGKAWKRGYLLFGPPGTGKSTMIAAMANCLNYDVYDL 258
K E I +D+ KF ++Y G ++RGYLL+GPPGTGKS+ I A+A L + L
Sbjct: 213 KGKSELIIQDVKKFLNNSDWYNDRGIPYRRGYLLYGPPGTGKSSFITALAGELQLSICIL 272
Query: 259 ELT--SVENN--NEL------RSLLV-------------DISSKKKKSN----------- 284
L SV + N+L RS+++ D+S+K +N
Sbjct: 273 NLAGKSVSDTSLNQLLATAPQRSIILLEDIDSAIQTGNHDLSAKSNSANAPSISSGGLQY 332
Query: 285 ---------------VTLSGLLNCIGGLWSTCGGERIIVFTTNHVDKLDPALIRRGRMDK 329
+T SGLLN + G+ ++ G RI+ TTNH++KLD LIR GR+D
Sbjct: 333 QGYYGNPSVSSGGSALTFSGLLNALDGVAASEG--RILFMTTNHLEKLDKVLIRPGRVDL 390
Query: 330 HIEMPYCC 337
IE+ C
Sbjct: 391 QIEIGLCS 398
>sp|Q5E9H5|BCS1_BOVIN Mitochondrial chaperone BCS1 OS=Bos taurus GN=BCS1L PE=2 SV=1
Length = 419
Score = 94.0 bits (232), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 74/260 (28%), Positives = 120/260 (46%), Gaps = 39/260 (15%)
Query: 151 VLEEGKAIAVRNRQRK--LYKNVPCQAWYEKKWSHVYFEHPATFDTLAMASKKKEAIKKD 208
+LEE + +A++ + K +Y V + W + + + P +++ + E I +D
Sbjct: 150 ILEEARELALQQEEGKTVMYTAVGSE-W--RPFGYPRRRRP--LNSVVLEQGVTERIVRD 204
Query: 209 LIKFTEGKEYYAKIGKAWKRGYLLFGPPGTGKSTMIAAMANCLNYDVYDL---------- 258
+ +F + ++Y G ++RGYLL+GPPG GKS+ I A+A L + + L
Sbjct: 205 IREFIDNPKWYIDRGIPYRRGYLLYGPPGCGKSSFITALAGELQHSICLLSLTDSSLSDD 264
Query: 259 ---ELTSVENNNELRSLLVDISSK--------------KKKSNVTLSGLLNCIGGLWSTC 301
L SV L LL D+ + + +T SGLLN + G+ ST
Sbjct: 265 RLNHLLSVAPQQSL-VLLEDVDAAFLSRDLAAENPIKYQGLGRLTFSGLLNALDGVASTE 323
Query: 302 GGERIIVFTTNHVDKLDPALIRRGRMDKHIEMPYCCFEAFKVLAKNYLEIESHELFHEIG 361
RI+ TTNH+D+LDPALIR GR+D + +C + + + ++ L
Sbjct: 324 A--RIVFMTTNHIDRLDPALIRPGRVDMKEYVGHCSRWQLTQMFQRFYPGQATSLAENFA 381
Query: 362 S--LLGETDITPADVAENLM 379
L T I+PA V M
Sbjct: 382 DRVLQATTQISPAQVQGYFM 401
>sp|Q9Y276|BCS1_HUMAN Mitochondrial chaperone BCS1 OS=Homo sapiens GN=BCS1L PE=1 SV=1
Length = 419
Score = 93.6 bits (231), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 75/259 (28%), Positives = 119/259 (45%), Gaps = 37/259 (14%)
Query: 151 VLEEGKAIAVRNRQRK--LYKNVPCQAWYEKKWSHVYFEHPATFDTLAMASKKKEAIKKD 208
+LEE + +A++ + K +Y V + W + + + P +++ + + I +D
Sbjct: 150 ILEEARELALQQEEGKTVMYTAVGSE-W--RPFGYPRRRRP--LNSVVLQQGLADRIVRD 204
Query: 209 LIKFTEGKEYYAKIGKAWKRGYLLFGPPGTGKSTMIAAMANCLNYDVYDL---------- 258
+ +F + ++Y G ++RGYLL+GPPG GKS+ I A+A L + + L
Sbjct: 205 VQEFIDNPKWYTDRGIPYRRGYLLYGPPGCGKSSFITALAGELEHSICLLSLTDSSLSDD 264
Query: 259 ---ELTSVENNNEL------------RSLLVDISSK-KKKSNVTLSGLLNCIGGLWSTCG 302
L SV L R L V+ K + +T SGLLN + G+ ST
Sbjct: 265 RLNHLLSVAPQQSLVLLEDVDAAFLSRDLAVENPVKYQGLGRLTFSGLLNALDGVASTEA 324
Query: 303 GERIIVFTTNHVDKLDPALIRRGRMDKHIEMPYCCFEAFKVLAKNYLEIESHELFHEIGS 362
RI+ TTNHVD+LDPALIR GR+D + YC + + + ++ L
Sbjct: 325 --RIVFMTTNHVDRLDPALIRPGRVDLKEYVGYCSHWQLTQMFQRFYPGQAPSLAENFAE 382
Query: 363 --LLGETDITPADVAENLM 379
L I+PA V M
Sbjct: 383 HVLRATNQISPAQVQGYFM 401
>sp|Q54HY8|BCS1A_DICDI Probable mitochondrial chaperone BCS1-A OS=Dictyostelium discoideum
GN=bcs1la PE=3 SV=1
Length = 421
Score = 91.3 bits (225), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 68/220 (30%), Positives = 109/220 (49%), Gaps = 37/220 (16%)
Query: 144 TGEYVNQVLEEGKAIAVRNRQRKLYKNVPCQAWYEKKWSHVYFEHPATFDTLA---MASK 200
+ +NQ+L+E +++ R + K V W F +P + +L+ +A
Sbjct: 140 NAQLINQLLQEAMTLSL---NRDIGKTVIYINGGNGNWER--FGNPRSIRSLSSVILADD 194
Query: 201 KKEAIKKDLIKFTEGKEYYAKIGKAWKRGYLLFGPPGTGKSTMIAAMANCLNYDVYDLEL 260
K + +D+ F + +Y G ++RGYLL+G PG GKS++I A+A LN D+ + L
Sbjct: 195 LKSKLIEDIKSFITNESWYRNRGIPYRRGYLLYGEPGNGKSSLINAIAGELNLDICIVSL 254
Query: 261 TSVE----------NNNELRSLL----VDISSKKKKSNV-------------TLSGLLNC 293
+S + NN +S+L +D + K + NV T SGLLN
Sbjct: 255 SSKDIDDKQINHLLNNAPPKSILLIEDIDAAFKSHRDNVDSNNNNSNNNNSLTYSGLLNA 314
Query: 294 IGGLWSTCGGERIIVFTTNHVDKLDPALIRRGRMDKHIEM 333
+ G+ S G RI+ TTN ++ LD ALIR GR+D I++
Sbjct: 315 LDGVASQEG--RILFMTTNKIELLDSALIREGRIDLKIKV 352
>sp|Q7ZTL7|BCS1_XENLA Mitochondrial chaperone BCS1 OS=Xenopus laevis GN=bcs1l PE=2 SV=1
Length = 419
Score = 91.3 bits (225), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 81/279 (29%), Positives = 131/279 (46%), Gaps = 44/279 (15%)
Query: 151 VLEEGKAIAVRNRQRK--LYKNVPCQAWYEKKWSHVYF-EHPATFDTLAMASKKKEAIKK 207
+L+E + +A++ + K +Y V + W F ++ + E I +
Sbjct: 150 ILQEARELALKQQVGKTVMYNAVGAE------WRQFGFPRRRRPLSSVVLEQGISEKIVQ 203
Query: 208 DLIKFTEGKEYYAKIGKAWKRGYLLFGPPGTGKSTMIAAMANCLNYDVYDL--------- 258
D+ F E ++Y+ G ++RGYLL+GPPG GKS+ I A+A L Y + +
Sbjct: 204 DVKGFIENPKWYSDRGIPYRRGYLLYGPPGCGKSSFITALAGELEYSICLMSLSDSSLSD 263
Query: 259 ----ELTSVENNNELRSLLVD-----ISSKKKKSN---------VTLSGLLNCIGGLWST 300
L SV + LL D +S K N +T SGLLN + G+ ST
Sbjct: 264 DRLNHLLSVAPQQSI-ILLEDVDAAFVSRDLNKQNPTAYQGMGRLTFSGLLNALDGVAST 322
Query: 301 CGGERIIVFTTNHVDKLDPALIRRGRMDKHIEMPYCC-FEAFKVLAKNYLEIESHELFHE 359
RI+ TTNH+D+LDPALIR GR+D + +C ++ ++ + Y + + +
Sbjct: 323 EA--RIVFMTTNHIDRLDPALIRPGRVDVKQYVGHCTNWQLSQMFLRFYPDQTAGQSEAF 380
Query: 360 IGSLLGETD-ITPADVAEN-LMPKSDEDDA--GTCLKNL 394
+ L +D I+ A V + +M K+D D A CL +
Sbjct: 381 ASAALSSSDKISAAQVQGHFMMHKTDPDGAIQNVCLATM 419
>sp|Q7ZV60|BCS1_DANRE Mitochondrial chaperone BCS1 OS=Danio rerio GN=bcs1l PE=2 SV=2
Length = 420
Score = 90.5 bits (223), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 69/235 (29%), Positives = 111/235 (47%), Gaps = 35/235 (14%)
Query: 192 FDTLAMASKKKEAIKKDLIKFTEGKEYYAKIGKAWKRGYLLFGPPGTGKSTMIAAMANCL 251
++ + S E I D+ +F ++Y G ++RGYLL+GPPG GKS+ I A+A L
Sbjct: 188 LSSVVLESGVAERIVDDVKEFIGNPKWYTDRGIPYRRGYLLYGPPGCGKSSFITALAGEL 247
Query: 252 NYDVYDLELT----SVENNNELRS--------LLVDISSK---------------KKKSN 284
Y + + L+ S + N L S LL D+ + +
Sbjct: 248 GYSICLMSLSDRSLSDDRLNHLLSVAPQQSIILLEDVDAAFVSRELLPTENPLAYQGMGR 307
Query: 285 VTLSGLLNCIGGLWSTCGGERIIVFTTNHVDKLDPALIRRGRMDKHIEMPYCCFEAFKVL 344
+T SGLLN + G+ S+ RI+ TTN +++LDPAL+R GR+D + +C +
Sbjct: 308 LTFSGLLNALDGVASSEA--RIVFMTTNFIERLDPALVRPGRVDLKQYVGHCSHWQLTQM 365
Query: 345 AKNYLEIES---HELFHEIGSLLGETDITPADVAENLMPKSDEDDAGTCLKNLIE 396
+ + ES + F E +L TD++ A V + M + D +KN+ E
Sbjct: 366 FRRFYPQESAAEADHFSE-QALAAHTDLSAAQVQGHFMLY--KTDPAGAIKNIAE 417
>sp|O18413|PRS8_DROME 26S protease regulatory subunit 8 OS=Drosophila melanogaster
GN=Pros45 PE=1 SV=2
Length = 405
Score = 67.4 bits (163), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 60/213 (28%), Positives = 96/213 (45%), Gaps = 32/213 (15%)
Query: 158 IAVRNRQRKLYKNVPCQAWYEKKWSHVYFEHPATFDTLAMASKKKEAIKKDLIKFTEGKE 217
+A+RN L+K +P + V +T++ + K+ + IK+ + + E
Sbjct: 113 VALRNESYTLHKILPNKVDPLVSLMMVEKVPDSTYEMVGGLDKQIKEIKEVIELPVKHPE 172
Query: 218 YYAKIGKAWKRGYLLFGPPGTGKSTMIAAMAN---CLNYDVYDLELTSV---ENNNELRS 271
+ +G A +G LL+GPPGTGK+ + A+A+ C V EL E + +R
Sbjct: 173 LFDALGIAQPKGVLLYGPPGTGKTLLARAVAHHTECTFIRVSGSELVQKFIGEGSRMVRE 232
Query: 272 LLV----------------DISSKKKKSNV--------TLSGLLNCIGGLWSTCGGERII 307
L V I S + +S T+ LLN + G +T + +
Sbjct: 233 LFVMAREHAPSIIFMDEIDSIGSSRIESGSGGDSEVQRTMLELLNQLDGFEATKNIK--V 290
Query: 308 VFTTNHVDKLDPALIRRGRMDKHIEMPYCCFEA 340
+ TN +D LDPAL+R GR+D+ IE P EA
Sbjct: 291 IMATNRIDILDPALLRPGRIDRKIEFPPPNEEA 323
>sp|D4GUJ7|PAN1_HALVD Proteasome-activating nucleotidase 1 OS=Haloferax volcanii (strain
ATCC 29605 / DSM 3757 / JCM 8879 / NBRC 14742 / NCIMB
2012 / VKM B-1768 / DS2) GN=pan1 PE=2 SV=2
Length = 406
Score = 67.0 bits (162), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 62/256 (24%), Positives = 109/256 (42%), Gaps = 35/256 (13%)
Query: 111 KKVPRTPVVYFYPGSYDERHYTLTFHKRYRELIT--GEYVNQVLEEGKAIAVRNRQRKLY 168
KK+ ++P+ + + H +E +T + + + LE +AV N +
Sbjct: 67 KKLKQSPLFVATVQEITDEGVIIKQHGNNQEALTEVTDEMREELEPDARVAVNN-SLSIV 125
Query: 169 KNVPCQAWYEKKWSHVYFEHPATFDTLAMASKKKEAIKKDLIKFTEGKEYYAKIGKAWKR 228
K + + + V T++ + ++ + +++ + + E +A++G
Sbjct: 126 KRLDKETDVRARVMQVEHSPDVTYEDIGGLEEQMQEVRETVEMPLDRPEMFAEVGIDPPS 185
Query: 229 GYLLFGPPGTGKSTMIAAMANCLNYDVYDL------------------ELTSVENNNELR 270
G LL+GPPGTGK+ + A+AN N + +L V NE
Sbjct: 186 GVLLYGPPGTGKTMLAKAVANQTNASFIKMAGSELVHKFIGEGAKLVRDLFEVARENEPA 245
Query: 271 SLLVD----ISSKKKKSNV--------TLSGLLNCIGGLWSTCGGERIIVFTTNHVDKLD 318
+ +D I+SK+ S T+ LL + G + G RII TN D LD
Sbjct: 246 VIFIDEIDAIASKRTDSKTSGDAEVQRTMMQLLAEMDG-FDERGNIRIIA-ATNRFDMLD 303
Query: 319 PALIRRGRMDKHIEMP 334
PA++R GR D+ IE+P
Sbjct: 304 PAILRPGRFDRLIEVP 319
>sp|P78578|PRS6B_ASPNG 26S protease regulatory subunit 6B homolog OS=Aspergillus niger
GN=tbpA PE=3 SV=1
Length = 423
Score = 67.0 bits (162), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 48/165 (29%), Positives = 78/165 (47%), Gaps = 40/165 (24%)
Query: 202 KEAIKKDLIKFTEGKEYYAKIGKAWKRGYLLFGPPGTGKSTMIAAMANCLNYD------- 254
+EA++ L +F + Y +IG RG LL+GPPGTGK+ ++ A+AN
Sbjct: 179 REAVELPLTQF----DLYKQIGIDPPRGVLLYGPPGTGKTMLVKAVANSTTASFIRVNGS 234
Query: 255 -------------VYDLELTSVENNNELRSLLVD----ISSKK--------KKSNVTLSG 289
V D+ + EN+ + + +D I++K+ ++ L
Sbjct: 235 EFVQKYLGEGPRMVRDVFRMARENSPAI--IFIDEIDAIATKRFDAQTGADREVQRILLE 292
Query: 290 LLNCIGGLWSTCGGERIIVFTTNHVDKLDPALIRRGRMDKHIEMP 334
LLN + G + + ++ TN D LDPAL+R GR+D+ IE P
Sbjct: 293 LLNQMDGFEQSSNVK--VIMATNRADTLDPALLRPGRLDRKIEFP 335
>sp|P54814|PRS8_MANSE 26S protease regulatory subunit 8 OS=Manduca sexta PE=2 SV=1
Length = 402
Score = 67.0 bits (162), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 60/213 (28%), Positives = 96/213 (45%), Gaps = 32/213 (15%)
Query: 158 IAVRNRQRKLYKNVPCQAWYEKKWSHVYFEHPATFDTLAMASKKKEAIKKDLIKFTEGKE 217
+A+RN L+K +P + V +T++ + K+ + IK+ + + E
Sbjct: 110 VALRNESYTLHKILPNKVDPLVSLMMVEKVPDSTYEMVGGLDKQIKEIKEVIELPVKHPE 169
Query: 218 YYAKIGKAWKRGYLLFGPPGTGKSTMIAAMAN---CLNYDVYDLELTSV---ENNNELRS 271
+ +G A +G LL+GPPGTGK+ + A+A+ C V EL E + +R
Sbjct: 170 LFDALGIAQPKGVLLYGPPGTGKTLLARAVAHHTECTFIRVSGSELVQKFIGEGSRMVRE 229
Query: 272 LLV----------------DISSKKKKSNV--------TLSGLLNCIGGLWSTCGGERII 307
L V I S + +S T+ LLN + G +T + +
Sbjct: 230 LFVMAREHAPSIIFMDEIDSIGSSRIESGSGGDSEVQRTMLELLNQLDGFEATKNIK--V 287
Query: 308 VFTTNHVDKLDPALIRRGRMDKHIEMPYCCFEA 340
+ TN +D LDPAL+R GR+D+ IE P EA
Sbjct: 288 IMATNRIDILDPALLRPGRIDRKIEFPPPNEEA 320
>sp|Q5UR45|YL572_MIMIV Putative AAA family ATPase L572 OS=Acanthamoeba polyphaga mimivirus
GN=MIMI_L572 PE=3 SV=1
Length = 196
Score = 66.2 bits (160), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 30/57 (52%), Positives = 42/57 (73%), Gaps = 2/57 (3%)
Query: 280 KKKSNVTLSGLLNCIGGLWSTCGGERIIVFTTNHVDKLDPALIRRGRMDKHIEMPYC 336
+K S +TLSG+LN + G++++ G RI++ TTNH + LDPALIRRGR+D IE C
Sbjct: 87 EKVSKLTLSGILNSLDGIFNSEG--RIVIMTTNHSEVLDPALIRRGRIDMQIEFSNC 141
>sp|Q25544|PRS8_NAEFO 26S protease regulatory subunit 8 homolog OS=Naegleria fowleri PE=2
SV=1
Length = 414
Score = 66.2 bits (160), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 59/214 (27%), Positives = 95/214 (44%), Gaps = 33/214 (15%)
Query: 152 LEEGKAIAVRNRQRKLYKNVPCQAWYEKKWSHVYFEHPATFDTLAMASKKKEAIKKDLIK 211
L G +A+RN L+K +P + V AT++ + ++ + IK+ +
Sbjct: 115 LTPGVRVALRNDSYALHKILPNKIDPLVSLMKVEKVPDATYEMVGGLDEQIKEIKEVIEL 174
Query: 212 FTEGKEYYAKIGKAWKRGYLLFGPPGTGKSTMIAAMA---NCLNYDVYDLELTSV---EN 265
+ E + +G A +G +++GPPGTGK+ + A+A +C V EL E
Sbjct: 175 PIKHPELFESLGIAQPKGVIMYGPPGTGKTLLARAVAHHTDCTFIRVSGSELVQKYIGEG 234
Query: 266 NNELRSLLV----------------DISSKKKKS---------NVTLSGLLNCIGGLWST 300
+ +R L V I S + + T+ LLN + G ST
Sbjct: 235 SKMVRELFVMAREHAPSIIFMDEIDSIGSTRTEGGKGGGDSEVQRTMLELLNQLDGFEST 294
Query: 301 CGGERIIVFTTNHVDKLDPALIRRGRMDKHIEMP 334
+ I+ TN +D LDPAL+R GR+D+ IE P
Sbjct: 295 QNIK--IIMATNRIDILDPALLRPGRIDRKIEFP 326
>sp|P62193|PRS4_RAT 26S protease regulatory subunit 4 OS=Rattus norvegicus GN=Psmc1
PE=2 SV=1
Length = 440
Score = 65.1 bits (157), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 46/148 (31%), Positives = 70/148 (47%), Gaps = 32/148 (21%)
Query: 217 EYYAKIGKAWKRGYLLFGPPGTGKSTMIAAMANCLNYDVYDL------------------ 258
EYY ++G +G +L+GPPGTGK+ + A+AN + +
Sbjct: 209 EYYEEMGIKPPKGVILYGPPGTGKTLLAKAVANQTSATFLRVVGSELIQKYLGDGPKLVR 268
Query: 259 ELTSVENNNELRSLLVD----ISSKKKKSNV--------TLSGLLNCIGGLWSTCGGERI 306
EL V + + +D I +K+ SN T+ LLN + G S G+
Sbjct: 269 ELFRVAEEHAPSIVFIDEIDAIGTKRYDSNSGGEREIQRTMLELLNQLDGFDSR--GDVK 326
Query: 307 IVFTTNHVDKLDPALIRRGRMDKHIEMP 334
++ TN ++ LDPALIR GR+D+ IE P
Sbjct: 327 VIMATNRIETLDPALIRPGRIDRKIEFP 354
>sp|P62192|PRS4_MOUSE 26S protease regulatory subunit 4 OS=Mus musculus GN=Psmc1 PE=1
SV=1
Length = 440
Score = 65.1 bits (157), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 46/148 (31%), Positives = 70/148 (47%), Gaps = 32/148 (21%)
Query: 217 EYYAKIGKAWKRGYLLFGPPGTGKSTMIAAMANCLNYDVYDL------------------ 258
EYY ++G +G +L+GPPGTGK+ + A+AN + +
Sbjct: 209 EYYEEMGIKPPKGVILYGPPGTGKTLLAKAVANQTSATFLRVVGSELIQKYLGDGPKLVR 268
Query: 259 ELTSVENNNELRSLLVD----ISSKKKKSNV--------TLSGLLNCIGGLWSTCGGERI 306
EL V + + +D I +K+ SN T+ LLN + G S G+
Sbjct: 269 ELFRVAEEHAPSIVFIDEIDAIGTKRYDSNSGGEREIQRTMLELLNQLDGFDSR--GDVK 326
Query: 307 IVFTTNHVDKLDPALIRRGRMDKHIEMP 334
++ TN ++ LDPALIR GR+D+ IE P
Sbjct: 327 VIMATNRIETLDPALIRPGRIDRKIEFP 354
>sp|P62191|PRS4_HUMAN 26S protease regulatory subunit 4 OS=Homo sapiens GN=PSMC1 PE=1
SV=1
Length = 440
Score = 65.1 bits (157), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 46/148 (31%), Positives = 70/148 (47%), Gaps = 32/148 (21%)
Query: 217 EYYAKIGKAWKRGYLLFGPPGTGKSTMIAAMANCLNYDVYDL------------------ 258
EYY ++G +G +L+GPPGTGK+ + A+AN + +
Sbjct: 209 EYYEEMGIKPPKGVILYGPPGTGKTLLAKAVANQTSATFLRVVGSELIQKYLGDGPKLVR 268
Query: 259 ELTSVENNNELRSLLVD----ISSKKKKSNV--------TLSGLLNCIGGLWSTCGGERI 306
EL V + + +D I +K+ SN T+ LLN + G S G+
Sbjct: 269 ELFRVAEEHAPSIVFIDEIDAIGTKRYDSNSGGEREIQRTMLELLNQLDGFDSR--GDVK 326
Query: 307 IVFTTNHVDKLDPALIRRGRMDKHIEMP 334
++ TN ++ LDPALIR GR+D+ IE P
Sbjct: 327 VIMATNRIETLDPALIRPGRIDRKIEFP 354
>sp|Q90732|PRS4_CHICK 26S protease regulatory subunit 4 OS=Gallus gallus GN=PSMC1 PE=2
SV=1
Length = 440
Score = 64.7 bits (156), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 46/148 (31%), Positives = 70/148 (47%), Gaps = 32/148 (21%)
Query: 217 EYYAKIGKAWKRGYLLFGPPGTGKSTMIAAMANCLNYDVYDL------------------ 258
EYY ++G +G +L+GPPGTGK+ + A+AN + +
Sbjct: 209 EYYEEMGIKPPKGVILYGPPGTGKTLLAKAVANQTSATFLRVVGSELIQKYLGDGPKLVR 268
Query: 259 ELTSVENNNELRSLLVD----ISSKKKKSNV--------TLSGLLNCIGGLWSTCGGERI 306
EL V + + +D I +K+ SN T+ LLN + G S G+
Sbjct: 269 ELFRVAEEHGPSIVFIDEIDAIGTKRYDSNSGGEREIQRTMLELLNQLDGFDSR--GDVK 326
Query: 307 IVFTTNHVDKLDPALIRRGRMDKHIEMP 334
++ TN ++ LDPALIR GR+D+ IE P
Sbjct: 327 VIMATNRIETLDPALIRPGRIDRKIEFP 354
>sp|P48601|PRS4_DROME 26S protease regulatory subunit 4 OS=Drosophila melanogaster
GN=Pros26.4 PE=2 SV=2
Length = 439
Score = 64.3 bits (155), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 45/148 (30%), Positives = 70/148 (47%), Gaps = 32/148 (21%)
Query: 217 EYYAKIGKAWKRGYLLFGPPGTGKSTMIAAMANCLNYDVYDL------------------ 258
EYY ++G +G +L+GPPGTGK+ + A+AN + +
Sbjct: 208 EYYEEMGIKPPKGVILYGPPGTGKTLLAKAVANQTSATFLRVVGSELIQKYLGDGPKLVR 267
Query: 259 ELTSVENNNELRSLLVD----ISSKKKKSNV--------TLSGLLNCIGGLWSTCGGERI 306
EL V + + +D + +K+ SN T+ LLN + G S G+
Sbjct: 268 ELFRVAEEHAPSIVFIDEIDAVGTKRYDSNSGGEREIQRTMLELLNQLDGFDSR--GDVK 325
Query: 307 IVFTTNHVDKLDPALIRRGRMDKHIEMP 334
++ TN ++ LDPALIR GR+D+ IE P
Sbjct: 326 VIMATNRIETLDPALIRPGRIDRKIEFP 353
>sp|A6LD25|FTSH_PARD8 ATP-dependent zinc metalloprotease FtsH OS=Parabacteroides
distasonis (strain ATCC 8503 / DSM 20701 / NCTC 11152)
GN=ftsH PE=3 SV=1
Length = 684
Score = 63.5 bits (153), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 50/183 (27%), Positives = 80/183 (43%), Gaps = 40/183 (21%)
Query: 187 EHPATF-DTLAMASKKKEAIKKDLIKFTEGKEYYAKIGKAWKRGYLLFGPPGTGKSTMIA 245
+ TF D +A K+E ++++ F + E Y ++G +G LL GPPGTGK+ +
Sbjct: 190 DRKVTFKDVAGLAEAKQEV--EEIVSFLKNPEKYTELGGKIPKGALLVGPPGTGKTLLAK 247
Query: 246 AMANCLNYDVYDLE--------------------------------LTSVENNNELRSLL 273
A+A N + L + ++ R
Sbjct: 248 AVAGEANVPFFSLSGSDFVEMFVGVGASRVRDLFRQAKEKSPCIVFIDEIDAVGRARGKN 307
Query: 274 VDISSKKKKSNVTLSGLLNCIGGLWSTCGGERIIVFTTNHVDKLDPALIRRGRMDK--HI 331
+++S ++ N TL+ LL + G S G II+ TN D LD AL+R GR D+ H+
Sbjct: 308 ANMNSNDEREN-TLNQLLTEMDGFGSNSG--VIILAATNRADILDKALLRAGRFDRQIHV 364
Query: 332 EMP 334
E+P
Sbjct: 365 ELP 367
>sp|Q8SR13|PRS6A_ENCCU 26S protease regulatory subunit 6A OS=Encephalitozoon cuniculi
(strain GB-M1) GN=RPT5 PE=1 SV=1
Length = 401
Score = 63.5 bits (153), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 59/226 (26%), Positives = 99/226 (43%), Gaps = 38/226 (16%)
Query: 143 ITGEYVNQVLEEGKAIAVRNRQRKLYKNVPCQAWYEKKWSHVYFEHPA----TFDTLAMA 198
ITG N L G +A+ +++ +P Y+ K + + A T++ +
Sbjct: 96 ITGLIPNSELRPGDLVALHKDTNIVFEKLPPD--YDMKVGGMVLKSDAKPDETYEDIGGL 153
Query: 199 SKKKEAIKKDLIKFTEGKEYYAKIGKAWKRGYLLFGPPGTGKSTMIAAMANCLNYDVYDL 258
++ E + + ++ E + K+ +G L++GPPGTGK+ M A A+ N L
Sbjct: 154 ERQIEELNEAIVLSLTHPERFEKLNIKPPKGVLMYGPPGTGKTLMARACASKTNATFLKL 213
Query: 259 ---ELTSVENNNELR---------------SLLVD----ISSKKKKSNV--------TLS 288
+L + + R + +D I +K+ S+ T+
Sbjct: 214 AGPQLVQMYIGDGARLVRDAFALAKERKPTIIFIDEIDAIGAKRSDSDQTGDREVQRTML 273
Query: 289 GLLNCIGGLWSTCGGERIIVFTTNHVDKLDPALIRRGRMDKHIEMP 334
LLN + G S+ E I+ TN VD LDPAL+R GR+D+ IE P
Sbjct: 274 ELLNQLDGFSSS--EEVKIIAATNRVDILDPALLRSGRLDRKIEFP 317
>sp|O23894|PRS6A_BRACM 26S protease regulatory subunit 6A homolog OS=Brassica campestris
GN=TBP1 PE=2 SV=1
Length = 424
Score = 63.2 bits (152), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 53/156 (33%), Positives = 73/156 (46%), Gaps = 34/156 (21%)
Query: 216 KEYYAKIGKAWKRGYLLFGPPGTGKSTMIAAMANCLNYDVYDL---ELTS---------V 263
KE + K+G +G LL+GPPGTGK+ M A A N L +L V
Sbjct: 194 KERFEKLGVRPPKGVLLYGPPGTGKTLMARACAAQTNATFLKLAGPQLVQMFIGDGAKLV 253
Query: 264 ENNNELRS------LLVD----ISSKKKKSNV--------TLSGLLNCIGGLWSTCGGER 305
+ +L + +D I +K+ S V T+ LLN + G S ER
Sbjct: 254 RDAFQLAKEKAPCIIFIDEIDAIGTKRFDSEVSGDREVQRTMLELLNQLDGFSS---DER 310
Query: 306 I-IVFTTNHVDKLDPALIRRGRMDKHIEMPYCCFEA 340
I ++ TN D LDPAL+R GR+D+ IE P+ EA
Sbjct: 311 IKVIAATNRADILDPALMRSGRLDRKIEFPHPTEEA 346
>sp|Q9SEI2|PS6AA_ARATH 26S protease regulatory subunit 6A homolog A OS=Arabidopsis
thaliana GN=RPT5A PE=2 SV=1
Length = 424
Score = 63.2 bits (152), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 53/156 (33%), Positives = 73/156 (46%), Gaps = 34/156 (21%)
Query: 216 KEYYAKIGKAWKRGYLLFGPPGTGKSTMIAAMANCLNYDVYDL---ELTS---------V 263
KE + K+G +G LL+GPPGTGK+ M A A N L +L V
Sbjct: 194 KERFEKLGVRPPKGVLLYGPPGTGKTLMARACAAQTNATFLKLAGPQLVQMFIGDGAKLV 253
Query: 264 ENNNELRS------LLVD----ISSKKKKSNV--------TLSGLLNCIGGLWSTCGGER 305
+ +L + +D I +K+ S V T+ LLN + G S ER
Sbjct: 254 RDAFQLAKEKAPCIIFIDEIDAIGTKRFDSEVSGDREVQRTMLELLNQLDGFSS---DER 310
Query: 306 I-IVFTTNHVDKLDPALIRRGRMDKHIEMPYCCFEA 340
I ++ TN D LDPAL+R GR+D+ IE P+ EA
Sbjct: 311 IKVIAATNRADILDPALMRSGRLDRKIEFPHPTEEA 346
>sp|P41836|PRS8_SCHPO 26S protease regulatory subunit 8 homolog OS=Schizosaccharomyces
pombe (strain 972 / ATCC 24843) GN=let1 PE=3 SV=1
Length = 403
Score = 62.8 bits (151), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 57/214 (26%), Positives = 92/214 (42%), Gaps = 33/214 (15%)
Query: 158 IAVRNRQRKLYKNVPCQAWYEKKWSHVYFEHPATFDTLAMASKKKEAIKKDLIKFTEGKE 217
+A+RN +L K +P + V +T++ + K+ + IK+ + + E
Sbjct: 110 VALRNDSYQLIKILPNKVDPLVSLMMVEKIPDSTYEMVGGLEKQIKEIKEVIELPVKHPE 169
Query: 218 YYAKIGKAWKRGYLLFGPPGTGKSTMIAAMA---NCLNYDVYDLELTSV---ENNNELRS 271
+ +G +G LL+GPPGTGK+ + A+A +C V EL E + +R
Sbjct: 170 LFESLGIPQPKGILLYGPPGTGKTLLARAVAHHTDCKFIRVSGSELVQKYIGEGSRMVRE 229
Query: 272 LLV-------------------------DISSKKKKSNVTLSGLLNCIGGLWSTCGGERI 306
L V S + T+ LLN + G +T +
Sbjct: 230 LFVMAREHAPSIIFMDEIDSIGSSRSDSSGGSGDSEVQRTMLELLNQLDGFEATKNIK-- 287
Query: 307 IVFTTNHVDKLDPALIRRGRMDKHIEMPYCCFEA 340
++ TN +D LDPAL+R GR+D+ IE P EA
Sbjct: 288 VIMATNRIDILDPALLRPGRIDRKIEFPPPSAEA 321
>sp|Q9HPF0|CDCH_HALSA Protein CdcH OS=Halobacterium salinarum (strain ATCC 700922 / JCM
11081 / NRC-1) GN=cdcH PE=3 SV=1
Length = 742
Score = 62.8 bits (151), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 43/144 (29%), Positives = 68/144 (47%), Gaps = 29/144 (20%)
Query: 217 EYYAKIGKAWKRGYLLFGPPGTGKSTMIAAMANCLNYDVYDLELTSV------ENNNELR 270
+ + K+G +G LL GPPGTGK+ + A+AN + + + + E+ +LR
Sbjct: 213 QIFQKLGIEPPQGVLLHGPPGTGKTLLAKAVANETSASFFSIAGPEIISKYYGESEQQLR 272
Query: 271 SLLVDI--------------SSKKKKSNVT-------LSGLLNCIGGLWSTCGGERIIVF 309
+ D S K+ +VT ++ LL + GL G+ I++
Sbjct: 273 EIFEDAKDDSPSIIFIDELDSIAPKREDVTGEVERRVVAQLLTMMDGLEGR--GQVIVIA 330
Query: 310 TTNHVDKLDPALIRRGRMDKHIEM 333
TN VD +DPAL R GR D+ IE+
Sbjct: 331 ATNRVDAVDPALRRPGRFDREIEI 354
Score = 51.6 bits (122), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 48/193 (24%), Positives = 82/193 (42%), Gaps = 31/193 (16%)
Query: 183 HVYFEHP-ATFDTLAMASKKKEAIKKDLIKFTEGKEYYAKIGKAWKRGYLLFGPPGTGKS 241
V E P T+D + ++ K +K+ + E + ++G G LL+GPPGTGK+
Sbjct: 451 EVLVELPKITWDDVGGLTEAKNNVKESVEWPLNQPEKFTRMGVEPPAGVLLYGPPGTGKT 510
Query: 242 TMIAAMANCLNYDVYDLELTSV------ENNNELRSL-------------------LVDI 276
M A+AN N + + + E+ +R L
Sbjct: 511 LMAKAVANETNANFISVRGPQLLSKWVGESEKAIRQTFRKARQVAPTVIFFDELDSLAPG 570
Query: 277 SSKKKKSNVT---LSGLLNCIGGLWSTCGGERIIVFTTNHVDKLDPALIRRGRMDKHIEM 333
+ +NV+ ++ LL + GL E +++ TN D +DPALIR GR D+ +++
Sbjct: 571 RGQTGGNNVSERVVNQLLTELDGLEEME--EVMVIAATNRPDIIDPALIRSGRFDRLVQV 628
Query: 334 PYCCFEAFKVLAK 346
E + + K
Sbjct: 629 GQPGIEGREQILK 641
>sp|Q5JHS5|PAN_PYRKO Proteasome-activating nucleotidase OS=Pyrococcus kodakaraensis
(strain ATCC BAA-918 / JCM 12380 / KOD1) GN=pan PE=3
SV=1
Length = 397
Score = 62.8 bits (151), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 58/222 (26%), Positives = 99/222 (44%), Gaps = 38/222 (17%)
Query: 152 LEEGKAIAVRNRQRKLYKNVPCQAWYEKKWSHVYFE---HP-ATFDTLAMASKKKEAIKK 207
L+ G +A+ R + + +P EK S + FE P T++ + K+ + +++
Sbjct: 97 LKPGARVALDQRTMAIVELLPS----EKDPSVLGFEVIERPKVTYNDIGGLEKQLQELRE 152
Query: 208 DLIKFTEGKEYYAKIGKAWKRGYLLFGPPGTGKSTMIAAMANCLN---YDVYDLELTS-- 262
+ + E + ++G +G LL+GPPG GK+ M A+AN +N V EL
Sbjct: 153 AIELPLKHPELFEQVGIEPPKGVLLYGPPGCGKTLMAKAVANHVNATFIRVVGSELVRKF 212
Query: 263 VENNNELRSLLVDISSKKKKSNVTLSGLLNCIGG--LWSTCGGER--------------- 305
+ L L ++ +K+K + ++ IG + T GGER
Sbjct: 213 IGEGARLVHELFEL-AKEKAPTIIFIDEIDAIGAKRMDETTGGEREVNRTLMQLLAEMDG 271
Query: 306 -------IIVFTTNHVDKLDPALIRRGRMDKHIEMPYCCFEA 340
++ TN D LDPAL+R GR D+ IE+P ++
Sbjct: 272 FDPRGNVKVIAATNRPDILDPALLRPGRFDRLIEVPLPDYQG 313
>sp|B6YXR2|PAN_THEON Proteasome-activating nucleotidase OS=Thermococcus onnurineus
(strain NA1) GN=pan PE=3 SV=1
Length = 398
Score = 62.4 bits (150), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 59/222 (26%), Positives = 100/222 (45%), Gaps = 38/222 (17%)
Query: 152 LEEGKAIAVRNRQRKLYKNVPCQAWYEKKWSHVYFE---HP-ATFDTLAMASKKKEAIKK 207
L+ G +A+ R + + +P EK S + FE P +++ + K+ + +++
Sbjct: 98 LKPGARVALDQRTMAIVELLPS----EKDPSVLGFEVIERPTVSYNDIGGLDKQLQELRE 153
Query: 208 DLIKFTEGKEYYAKIGKAWKRGYLLFGPPGTGKSTMIAAMANCLN---YDVYDLELTS-- 262
+ + E + K+G +G LL+GPPG GK+ M A+A+ +N V EL
Sbjct: 154 AIELPLKHPELFEKVGIEPPKGVLLYGPPGCGKTLMAKALAHEVNATFIRVVGSELVRKF 213
Query: 263 VENNNELRSLLVDISSKKKKSNVTLSGLLNCIGG--LWSTCGGER--------------- 305
+ L L ++ +K+K + ++ IG + T GGER
Sbjct: 214 IGEGARLVHELFEL-AKEKAPAIIFIDEIDAIGAKRMDETTGGEREVNRTLMQLLAEMDG 272
Query: 306 -------IIVFTTNHVDKLDPALIRRGRMDKHIEMPYCCFEA 340
I+ TN D LDPAL+R GR D+ IE+P F++
Sbjct: 273 FDPSGNVKIIAATNRPDILDPALLRPGRFDRLIEVPLPNFKS 314
>sp|Q2SF13|FTSH_HAHCH ATP-dependent zinc metalloprotease FtsH OS=Hahella chejuensis
(strain KCTC 2396) GN=ftsH PE=3 SV=1
Length = 619
Score = 62.4 bits (150), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 43/171 (25%), Positives = 74/171 (43%), Gaps = 29/171 (16%)
Query: 191 TFDTLAMASKKKEAIKKDLIKFTEGKEYYAKIGKAWKRGYLLFGPPGTGKSTMIAAMANC 250
TFD +A + K ++ +L+++ + + ++G RG LL GPPGTGK+ + A+A
Sbjct: 174 TFDEVAGQTNAKREVQ-ELVEYLRDPDRFHRVGALAPRGVLLMGPPGTGKTLLARALAGE 232
Query: 251 LNYDVYDL------------------ELTSVENNNELRSLLVD-ISSKKKKSNVTLSG-- 289
+ Y + +L + N + +D + S + G
Sbjct: 233 AGVNFYPMSASEFIEVFVGVGASRVRQLFKIAKENSPSIIFIDELDSVGRTRGAGYGGGH 292
Query: 290 ------LLNCIGGLWSTCGGERIIVF-TTNHVDKLDPALIRRGRMDKHIEM 333
L + + G + +IV TN D LDPAL+R GR D+H+ +
Sbjct: 293 DEREQTLNQILAEMDGFAGHDAVIVLAATNRPDVLDPALMRPGRFDRHVTL 343
>sp|P46470|PRS8_XENLA 26S protease regulatory subunit 8 OS=Xenopus laevis GN=psmc5 PE=2
SV=2
Length = 461
Score = 62.4 bits (150), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 56/206 (27%), Positives = 92/206 (44%), Gaps = 31/206 (15%)
Query: 158 IAVRNRQRKLYKNVPCQAWYEKKWSHVYFEHPATFDTLAMASKKKEAIKKDLIKFTEGKE 217
+A+RN L+K +P + V +T++ + K+ + IK+ + + E
Sbjct: 109 VALRNDSYTLHKILPNKVDPLVSLMMVEKVPDSTYEMIGGLDKQIKEIKEVIELPVKHPE 168
Query: 218 YYAKIGKAWKRGYLLFGPPGTGKSTMIAAMA---NCLNYDVYDLELTSV---ENNNELRS 271
++ +G A +G LL+GPPGTGK+ + A+A +C V EL E +R
Sbjct: 169 HFEALGIAQPKGVLLYGPPGTGKTLLARAVAHHTDCTFIRVSGSELVQKFIGEGARMVRE 228
Query: 272 LLV----------------DISSK-------KKKSNVTLSGLLNCIGGLWSTCGGERIIV 308
L V I S+ + T+ LLN + G +T + ++
Sbjct: 229 LFVMAREHAPSIIFMDEIDSIGSRLEGGSGGDSEVQRTMLELLNQLDGFEATKNIK--VI 286
Query: 309 FTTNHVDKLDPALIRRGRMDKHIEMP 334
TN +D LD AL+R GR+D+ IE P
Sbjct: 287 MATNRIDILDSALLRPGRIDRKIEFP 312
>sp|A9KIG5|FTSH_CLOPH ATP-dependent zinc metalloprotease FtsH OS=Clostridium
phytofermentans (strain ATCC 700394 / DSM 18823 / ISDg)
GN=ftsH PE=3 SV=1
Length = 577
Score = 62.0 bits (149), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 60/230 (26%), Positives = 98/230 (42%), Gaps = 50/230 (21%)
Query: 208 DLIKFTEGKEYYAKIGKAWKRGYLLFGPPGTGKSTMIAAMANCLNYDVYDLE-------- 259
D+I F + E Y+ +G +G +L+GPPGTGK+ + A+A Y +
Sbjct: 160 DIIDFIKEPEKYSALGARMPKGVMLYGPPGTGKTLIAKAIATEAGVPFYAMSGSDFVQMY 219
Query: 260 ----------LTSVENNNELRSLLVD----ISSKKKKS--------NVTLSGLLNCIGGL 297
L + +E + +D I K+ +S + TL+ LL + G
Sbjct: 220 VGVGASRIRTLFNKAKKSEKAVIFIDEIDAIGKKRARSTSASNDERDQTLNALLTEMSGF 279
Query: 298 WSTCGGERIIVFTTNHVDKLDPALIRRGRMDKHIEMPYCCFEAFKVLAKNYLEIESHELF 357
G +++ TN +D LD AL+R GR D+ IE+ A K + K Y
Sbjct: 280 HENKG--IVVIGATNRLDTLDEALLRPGRFDRQIEVGLPDILARKKILKLY--------- 328
Query: 358 HEIGSLLGETDITPADVAENLMPKSDEDDAGTCLKNLIE--ALKAAKEKA 405
G+ DV ++ K+ +G L+NL+ A++AA EK+
Sbjct: 329 -------GDKKPLGDDVDLEVLAKNTVSFSGAMLENLLNEAAIQAANEKS 371
>sp|Q01939|PRS8_YEAST 26S protease regulatory subunit 8 homolog OS=Saccharomyces
cerevisiae (strain ATCC 204508 / S288c) GN=RPT6 PE=1
SV=4
Length = 405
Score = 62.0 bits (149), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 50/175 (28%), Positives = 82/175 (46%), Gaps = 32/175 (18%)
Query: 190 ATFDTLAMASKKKEAIKKDLIKFTEGKEYYAKIGKAWKRGYLLFGPPGTGKSTMIAAMA- 248
+T+D + +K+ + IK+ + + E + +G A +G +L+GPPGTGK+ + A+A
Sbjct: 145 STYDMVGGLTKQIKEIKEVIELPVKHPELFESLGIAQPKGVILYGPPGTGKTLLARAVAH 204
Query: 249 --NCLNYDVYDLELTSV---ENNNELRSLLV----------------DISSKK------- 280
+C V EL E + +R L V I S +
Sbjct: 205 HTDCKFIRVSGAELVQKYIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSTRVEGSGGG 264
Query: 281 -KKSNVTLSGLLNCIGGLWSTCGGERIIVFTTNHVDKLDPALIRRGRMDKHIEMP 334
+ T+ LLN + G ++ + I+ TN +D LDPAL+R GR+D+ IE P
Sbjct: 265 DSEVQRTMLELLNQLDGFETSKNIK--IIMATNRLDILDPALLRPGRIDRKIEFP 317
>sp|P46465|PRS6A_ORYSJ 26S protease regulatory subunit 6A homolog OS=Oryza sativa subsp.
japonica GN=TBP1 PE=2 SV=2
Length = 429
Score = 62.0 bits (149), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 52/156 (33%), Positives = 73/156 (46%), Gaps = 34/156 (21%)
Query: 216 KEYYAKIGKAWKRGYLLFGPPGTGKSTMIAAMANCLNYDVYDL---ELTS---------V 263
K+ + K+G +G LL+GPPGTGK+ M A A N L +L V
Sbjct: 199 KDRFQKLGIRPPKGVLLYGPPGTGKTLMARACAAQTNATFLKLAGPQLVQMFIGDGAKLV 258
Query: 264 ENNNELRS------LLVD----ISSKKKKSNV--------TLSGLLNCIGGLWSTCGGER 305
+ +L + +D I +K+ S V T+ LLN + G S ER
Sbjct: 259 RDAFQLAKEKSPCIIFIDEIDAIGTKRFDSEVSGDREVQRTMLELLNQLDGFSS---DER 315
Query: 306 I-IVFTTNHVDKLDPALIRRGRMDKHIEMPYCCFEA 340
I ++ TN D LDPAL+R GR+D+ IE P+ EA
Sbjct: 316 IKVIAATNRADILDPALMRSGRLDRKIEFPHPSEEA 351
>sp|C5A6P8|PAN_THEGJ Proteasome-activating nucleotidase OS=Thermococcus gammatolerans
(strain DSM 15229 / JCM 11827 / EJ3) GN=pan PE=3 SV=1
Length = 397
Score = 62.0 bits (149), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 47/151 (31%), Positives = 68/151 (45%), Gaps = 30/151 (19%)
Query: 217 EYYAKIGKAWKRGYLLFGPPGTGKSTMIAAMANCLN---YDVYDLELTS--VENNNELRS 271
E + K+G +G LL+GPPG GK+ M A+AN +N V EL + L
Sbjct: 162 ELFEKVGIEPPKGVLLYGPPGCGKTLMAKAVANHVNATFIRVVGSELVRKFIGEGARLVH 221
Query: 272 LLVDISSKKKKSNVTLSGLLNCIGG--LWSTCGGER----------------------II 307
L ++ +K+K + ++ IG + T GGER +
Sbjct: 222 ELFEM-AKEKAPTIIFIDEIDAIGAKRMDETTGGEREVNRTLMQLLAEMDGFDPRGNVKV 280
Query: 308 VFTTNHVDKLDPALIRRGRMDKHIEMPYCCF 338
+ TN D LDPAL+R GR D+ IE+P F
Sbjct: 281 IAATNRPDILDPALLRPGRFDRLIEVPLPDF 311
>sp|Q975U2|PAN_SULTO Proteasome-activating nucleotidase OS=Sulfolobus tokodaii (strain
DSM 16993 / JCM 10545 / NBRC 100140 / 7) GN=pan PE=3
SV=2
Length = 392
Score = 62.0 bits (149), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 48/164 (29%), Positives = 78/164 (47%), Gaps = 32/164 (19%)
Query: 217 EYYAKIGKAWKRGYLLFGPPGTGKSTMIAAMANCLN-----------------------Y 253
E + +IG +G LL+GPPGTGK+ + A+A N
Sbjct: 158 ELFKEIGIDPPKGVLLYGPPGTGKTLLAKAVATESNATFIQVVASEFAQKFVGEGARIVR 217
Query: 254 DVYDL------ELTSVENNNELRSLLVDI-SSKKKKSNVTLSGLLNCIGGLWSTCGGERI 306
+V++L + ++ + + + VD+ +S +++ TL LL I G +
Sbjct: 218 EVFELARRKAPSIVFIDEIDAIGAKRVDMGTSGEREIQRTLMQLLAEIDGFKPLDNVK-- 275
Query: 307 IVFTTNHVDKLDPALIRRGRMDKHIEMPYCCFEAFKVLAKNYLE 350
I+ TN +D LDPAL+R GR D+ IE+P FE K + + YL+
Sbjct: 276 IIAATNRLDILDPALLRPGRFDRLIEVPLPNFEGRKEIFRIYLQ 319
>sp|Q7URM7|FTSH2_RHOBA ATP-dependent zinc metalloprotease FtsH 2 OS=Rhodopirellula baltica
(strain SH1) GN=ftsH2 PE=3 SV=1
Length = 728
Score = 62.0 bits (149), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 49/187 (26%), Positives = 81/187 (43%), Gaps = 35/187 (18%)
Query: 177 YEKKWSHVYFEH--PATFDTLAMASKKKEAIKKDLIKFTEGKEYYAKIGKAWKRGYLLFG 234
+ + +Y E P TF+ +A + + ++ +++ F + E Y +G +G LL G
Sbjct: 233 FSRSRGKLYSEDDLPTTFEDVAGIEEAVDEVR-EVVDFLKNSEKYQSLGGRIPKGVLLVG 291
Query: 235 PPGTGKSTMIAAMANCLNYDVYDL------ELTSVENNNELRSLL--------------- 273
PPGTGK+ + A+A + L E+ +R +
Sbjct: 292 PPGTGKTLLAKAIAGEAGVPFFSLSGSDFVEMFVGVGAARVRDMFTQAVNRAPCIIFIDE 351
Query: 274 VDISSKKKKSNV---------TLSGLLNCIGGLWSTCGGERIIVFTTNHVDKLDPALIRR 324
+D K + +V TL+ LL + G S G I+V TN + LDPAL+R
Sbjct: 352 LDALGKSRSGSVVGGHDEREQTLNALLVEMDGFDSNSG--VIVVAATNRPETLDPALLRP 409
Query: 325 GRMDKHI 331
GR D+H+
Sbjct: 410 GRFDRHV 416
>sp|O16368|PRS4_CAEEL Probable 26S protease regulatory subunit 4 OS=Caenorhabditis
elegans GN=rpt-2 PE=3 SV=1
Length = 443
Score = 62.0 bits (149), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 45/148 (30%), Positives = 69/148 (46%), Gaps = 32/148 (21%)
Query: 217 EYYAKIGKAWKRGYLLFGPPGTGKSTMIAAMANCLNYDVYDL------------------ 258
EYY ++G +G +L+G PGTGK+ + A+AN + +
Sbjct: 212 EYYEEMGIRPPKGVILYGCPGTGKTLLAKAVANQTSATFLRIVGSELIQKYLGDGPKMVR 271
Query: 259 ELTSVENNNELRSLLVD----ISSKKKKSNV--------TLSGLLNCIGGLWSTCGGERI 306
EL V N + +D + +K+ SN T+ LLN + G S G+
Sbjct: 272 ELFRVAEENAPSIVFIDEIDAVGTKRYDSNSGGEREIQRTMLELLNQLDGFDSR--GDVK 329
Query: 307 IVFTTNHVDKLDPALIRRGRMDKHIEMP 334
++ TN ++ LDPALIR GR+D+ IE P
Sbjct: 330 VLMATNRIESLDPALIRPGRIDRKIEFP 357
>sp|Q8U4H3|PAN_PYRFU Proteasome-activating nucleotidase OS=Pyrococcus furiosus (strain
ATCC 43587 / DSM 3638 / JCM 8422 / Vc1) GN=pan PE=3 SV=1
Length = 396
Score = 61.2 bits (147), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 55/218 (25%), Positives = 92/218 (42%), Gaps = 30/218 (13%)
Query: 152 LEEGKAIAVRNRQRKLYKNVPCQAWYEKKWSHVYFEHPATFDTLAMASKKKEAIKKDLIK 211
L G +A+ R + + +P V T++ + K+ + +++ +
Sbjct: 96 LRPGTRVALDQRTMAIIEILPASKDPAVLGFEVVERPNVTYNDIGGLKKQLQELREAIEL 155
Query: 212 FTEGKEYYAKIGKAWKRGYLLFGPPGTGKSTMIAAMANCLN---YDVYDLELTS--VENN 266
+ E + ++G +G LL+GPPG GK+ M A+A+ +N V EL +
Sbjct: 156 PLKHPELFEEVGIDPPKGVLLYGPPGCGKTLMAKAIAHEVNATFIRVVGSELVRKYIGEG 215
Query: 267 NELRSLLVDISSKKKKSNVTLSGLLNCIGG--LWSTCGGER------------------- 305
L L +++ K+K + ++ IG L T GGER
Sbjct: 216 ARLVHELFELA-KEKAPTIIFIDEIDAIGAKRLDETTGGEREVNRTLMQLLAEMDGFDPR 274
Query: 306 ---IIVFTTNHVDKLDPALIRRGRMDKHIEMPYCCFEA 340
++ TN D LDPAL+R GR D+ IE+P FE
Sbjct: 275 GNVKVIAATNRPDILDPALLRPGRFDRLIEVPLPDFEG 312
>sp|Q8SQK0|PRS8_ENCCU 26S protease regulatory subunit 8 homolog OS=Encephalitozoon
cuniculi (strain GB-M1) GN=RPT6 PE=1 SV=1
Length = 453
Score = 61.2 bits (147), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 55/213 (25%), Positives = 95/213 (44%), Gaps = 32/213 (15%)
Query: 152 LEEGKAIAVRNRQRKLYKNVPCQAWYEKKWSHVYFEHPATFDTLAMASKKKEAIKKDLIK 211
L+ G +A+R+ +++ +P + V +T+ + ++ + I++ +
Sbjct: 155 LKAGVRVALRSDSYDVHRILPTKVDPLVSLMMVEKVPDSTYQMIGGLDEQIKEIREVIEL 214
Query: 212 FTEGKEYYAKIGKAWKRGYLLFGPPGTGKSTMIAAMAN---CLNYDVYDLELTSV---EN 265
+ E + +G A +G LL+GPPGTGK+ + A+A+ C V EL E
Sbjct: 215 PIKHPELFENLGIAQPKGVLLYGPPGTGKTLLARAVAHHTQCKFIRVSGSELVQKYIGEG 274
Query: 266 NNELRSLLV----------------DISSKKKKSN--------VTLSGLLNCIGGLWSTC 301
+ +R L + I S + SN T+ LLN + G S
Sbjct: 275 SRLVRELFIMAREHAPSIIFMDEIDSIGSTRGDSNKGSDSEVQRTMLELLNQLDGFESHN 334
Query: 302 GGERIIVFTTNHVDKLDPALIRRGRMDKHIEMP 334
+ ++ TN +D LDPAL+R GR+D+ IE P
Sbjct: 335 NIK--VIMATNRIDILDPALLRTGRIDRKIEFP 365
>sp|A0L4S0|FTSH_MAGSM ATP-dependent zinc metalloprotease FtsH OS=Magnetococcus sp.
(strain MC-1) GN=ftsH PE=3 SV=1
Length = 673
Score = 61.2 bits (147), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 47/174 (27%), Positives = 80/174 (45%), Gaps = 33/174 (18%)
Query: 191 TFDTLAMASKKKEAIKKDLIKFTEGKEYYAKIGKAWKRGYLLFGPPGTGKSTMIAAMANC 250
TF +A + KE ++ ++++F + + ++G +G LL GPPGTGK+ + A+A
Sbjct: 152 TFQDVAGIEEAKEELQ-EVVQFLKDPHKFQRLGGKIPKGVLLVGPPGTGKTLLARAIAGE 210
Query: 251 LNYDVYDL------ELTSVENNNELRSLL---------------VDISSKKKKSNV---- 285
N ++L E+ +R + +D + + + +
Sbjct: 211 ANVPFFNLSGSDFVEMFVGVGAARVRDMFEQGKKNAPCIIFIDEIDAVGRHRGAGLGGGH 270
Query: 286 -----TLSGLLNCIGGLWSTCGGERIIVFTTNHVDKLDPALIRRGRMDKHIEMP 334
TL+ LL + G ST G I+V TN D LDPAL+R GR D+ + +P
Sbjct: 271 DEREQTLNQLLVEMDGFESTEG--VIMVAATNRPDVLDPALLRPGRFDRQVTVP 322
>sp|B9KXV3|FTSH1_THERP ATP-dependent zinc metalloprotease FtsH 1 OS=Thermomicrobium roseum
(strain ATCC 27502 / DSM 5159 / P-2) GN=ftsH1 PE=3 SV=1
Length = 652
Score = 61.2 bits (147), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 63/251 (25%), Positives = 107/251 (42%), Gaps = 50/251 (19%)
Query: 191 TFDTLAMASKKKEAIKKDLIKFTEGKEYYAKIGKAWKRGYLLFGPPGTGKSTMIAAMANC 250
TFD +A + KE ++ ++++F + E +A +G RG LL GPPGTGK+ + A+A
Sbjct: 161 TFDDVAGVDEAKEELQ-EIVEFLKYPEKFAALGARIPRGVLLVGPPGTGKTLLSRAVAGE 219
Query: 251 LNYDVYDL------ELTSVENNNELRSLL---------------VDISSKKKKSNV---- 285
+ + E+ + +R L +D +++ + +
Sbjct: 220 AGVPFFSISGSEFVEMFVGVGASRVRDLFDQAKRNAPCIVFIDEIDAVGRQRGAGLGGSH 279
Query: 286 -----TLSGLLNCIGGLWSTCGGERIIVFTTNHVDKLDPALIRRGRMDKHIEMPYCCFEA 340
TL+ +L + G S+ I++ TN D LDPAL+R GR D+ + +
Sbjct: 280 DEREQTLNQILVEMDGFDSST--NVIVIAATNRPDVLDPALLRPGRFDRQVVLDRPDLHG 337
Query: 341 FKVLAKNYLEIESHELFHEIGSLLGETDITPADVAENLMPKSDEDDAGTCLKNLI-EALK 399
+ K H G L E+D+ D+A + +G L+NL+ EA
Sbjct: 338 RLAILK----------VHTRGKPL-ESDVDLEDLA-----RQTPGFSGADLENLVNEAAI 381
Query: 400 AAKEKAKKNAG 410
A + KK G
Sbjct: 382 LAARRNKKTIG 392
>sp|D1C2C6|FTSH2_SPHTD ATP-dependent zinc metalloprotease FtsH 2 OS=Sphaerobacter
thermophilus (strain DSM 20745 / S 6022) GN=ftsH2 PE=3
SV=1
Length = 652
Score = 60.8 bits (146), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 48/177 (27%), Positives = 75/177 (42%), Gaps = 39/177 (22%)
Query: 187 EHPATFDTLAMASKKKEAIKKDLIKFTEGKEYYAKIGKAWKRGYLLFGPPGTGKSTMIAA 246
E TFD +A A + KE + D++ + E + ++G RG LL GPPGTGK+ + A
Sbjct: 154 ERVITFDDVAGAEEVKEEVA-DIVDYLRDPERFRRLGARIPRGVLLTGPPGTGKTLLTRA 212
Query: 247 MANCLNYDVYDLELTSVENNNELRSLLVDISS-------KKKKSNVTLSGLLNCIGGLWS 299
+A + + + +E L V + + +K K N ++ I +
Sbjct: 213 LAGEARASFFSV------SGSEFVELYVGVGASRVRELFRKAKENAPAIIFIDEIDAIGR 266
Query: 300 TCGG----------------------ER---IIVFTTNHVDKLDPALIRRGRMDKHI 331
G ER ++V TN VD LDPAL+R GR D+ +
Sbjct: 267 RRGRMEQSSEYDQTLNQILVEMDGFEERTTVVVVAATNRVDILDPALLRPGRFDRKV 323
>sp|A9FDV9|FTSH2_SORC5 ATP-dependent zinc metalloprotease FtsH 2 OS=Sorangium cellulosum
(strain So ce56) GN=ftsH2 PE=3 SV=1
Length = 607
Score = 60.8 bits (146), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 49/178 (27%), Positives = 81/178 (45%), Gaps = 36/178 (20%)
Query: 190 ATFDTLAMASKKKEAIKKDLIKFTEGKEYYAKIGKAWKRGYLLFGPPGTGKSTMIAAMAN 249
ATF +A ++ K + +++ F + E Y K+G RG LL GPPGTGK+ + A+A
Sbjct: 152 ATFRDVAGNAEAKTELS-EIVDFLKAPERYEKLGGRMPRGVLLVGPPGTGKTLLARAIAG 210
Query: 250 CLNYDVYD------LELTSVENNNELRSLLVDISSKKKKSNVTLSGLLNCIG---GLWST 300
+ + +E+ +R L +++K + + L+ +G GL +
Sbjct: 211 EASVPFFSASGSEFVEMFVGVGAARVRDLFS--QAREKGACLVFIDELDAVGKVRGLGGS 268
Query: 301 CGG--ER--------------------IIVFTTNHVDKLDPALIRRGRMDK--HIEMP 334
GG ER +++ TN + LDPAL+R GR D+ HI+ P
Sbjct: 269 VGGHDEREQTLNQLLTEMDGFDAHTAMVVIGATNRAEILDPALLRPGRFDRRVHIDRP 326
>sp|P34124|PRS8_DICDI 26S protease regulatory subunit 8 OS=Dictyostelium discoideum
GN=psmC5 PE=1 SV=2
Length = 403
Score = 60.8 bits (146), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 49/176 (27%), Positives = 78/176 (44%), Gaps = 33/176 (18%)
Query: 190 ATFDTLAMASKKKEAIKKDLIKFTEGKEYYAKIGKAWKRGYLLFGPPGTGKSTMIAAMA- 248
+T+D + K+ + IK+ + + E + +G A +G LL+GPPGTGK+ + A+A
Sbjct: 142 STYDMVGGLDKQIKEIKEVIELPIKHPELFESLGIAQPKGVLLYGPPGTGKTLLARAVAH 201
Query: 249 --NCLNYDVYDLELTSV---ENNNELRSLLV-------------------------DISS 278
+C V EL E + +R L +
Sbjct: 202 HTDCTFIRVSGSELVQKYIGEGSRMVRELFIMAREHAPSIIFMDEIDSIGSSRGESGSGG 261
Query: 279 KKKKSNVTLSGLLNCIGGLWSTCGGERIIVFTTNHVDKLDPALIRRGRMDKHIEMP 334
+ T+ LLN + G ST + ++ TN +D LDPAL+R GR+D+ IE P
Sbjct: 262 GDSEVQRTMLELLNQLDGFESTKNIK--VLMCTNRIDILDPALLRPGRIDRKIEFP 315
>sp|O28972|Y1297_ARCFU Cell division cycle protein 48 homolog AF_1297 OS=Archaeoglobus
fulgidus (strain ATCC 49558 / VC-16 / DSM 4304 / JCM
9628 / NBRC 100126) GN=AF_1297 PE=3 SV=1
Length = 733
Score = 60.8 bits (146), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 63/237 (26%), Positives = 96/237 (40%), Gaps = 64/237 (27%)
Query: 217 EYYAKIGKAWKRGYLLFGPPGTGKSTMIAAMANCLNYDVYDLELTSV------ENNNELR 270
E + ++G +G LL+GPPGTGK+ + A+AN ++ + + E+ LR
Sbjct: 206 ELFQRLGIEPPKGVLLYGPPGTGKTLIAKAVANEVDAHFIPISGPEIMSKYYGESEQRLR 265
Query: 271 SLL---------------VDISSKKKKSNVT-------LSGLLNCIGGLWSTCGGERIIV 308
+ +D S K+ VT ++ LL + GL + G+ I++
Sbjct: 266 EIFEEAKENAPSIIFIDEID-SIAPKREEVTGEVERRVVAQLLALMDGLEAR--GDVIVI 322
Query: 309 FTTNHVDKLDPALIRRGRMDKHIE-------------------MPYC---CFEAFKVLAK 346
TN D +DPAL R GR D+ IE MP E L
Sbjct: 323 AATNRPDAIDPALRRPGRFDREIEIGVPDKEGRKEILEIHTRKMPLAEDVDLEELAELTN 382
Query: 347 NYLEIESHEL-----FHEIGSLLGETDI----TPADVAENLMPKSDEDDAGTCLKNL 394
++ + L H + +L E DI PA+V ENL K +D LKN+
Sbjct: 383 GFVGADLEALCKEAAMHALRRVLPEIDIEAEEIPAEVIENL--KVTREDFMEALKNI 437
Score = 57.4 bits (137), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 53/177 (29%), Positives = 85/177 (48%), Gaps = 38/177 (21%)
Query: 203 EAIKKDLIKFTEGKEYYAKIGKAW----KRGYLLFGPPGTGKSTMIAAMANCLNYD---V 255
E K++L++ E Y ++ +A RG LLFGPPGTGK+ + A+AN N + V
Sbjct: 461 EHAKQELMEAVEWPLKYPEVFRAANIKPPRGILLFGPPGTGKTLLAKAVANESNANFISV 520
Query: 256 YDLELTSV---ENNNELRSLL---------------VDISSKKK----KSNVT---LSGL 290
EL S E+ +R + +D + ++ S+VT +S L
Sbjct: 521 KGPELLSKWVGESEKHVREMFRKARQVAPCVIFFDEIDSLAPRRGGIGDSHVTERVVSQL 580
Query: 291 LNCIGGLWSTCGGERIIVFTTNHVDKLDPALIRRGRMDKHIEMP----YCCFEAFKV 343
L + GL + +++ TN D +DPAL+R GR+++HI +P E FK+
Sbjct: 581 LTELDGLEEL--KDVVVIAATNRPDMIDPALLRPGRLERHIYIPPPDKKARVEIFKI 635
>sp|Q5UT56|PAN2_HALVD Proteasome-activating nucleotidase 2 OS=Haloferax volcanii (strain
ATCC 29605 / DSM 3757 / JCM 8879 / NBRC 14742 / NCIMB
2012 / VKM B-1768 / DS2) GN=pan2 PE=2 SV=1
Length = 412
Score = 60.5 bits (145), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 50/196 (25%), Positives = 88/196 (44%), Gaps = 36/196 (18%)
Query: 191 TFDTLAMASKKKEAIKKDLIKFTEGKEYYAKIGKAWKRGYLLFGPPGTGKSTMIAAMANC 250
T+D + ++ +++ + + E E +A++G G LL+GPPGTGK+ + A+AN
Sbjct: 150 TYDDIGGIDEQVREVREAVEQPLENPEMFAEVGIDPPSGVLLYGPPGTGKTMLAKAVANE 209
Query: 251 LNYDVYDL------------------ELTSVENNNELRSLLVD----ISSKKKKSNV--- 285
N + +L + E + +D ++SK+ S
Sbjct: 210 TNASFIKMAGSELVQKFIGEGARLVRDLFKLAAEREPVVVFIDEIDAVASKRTDSKTSGD 269
Query: 286 -----TLSGLLNCIGGLWSTCGGERIIVFTTNHVDKLDPALIRRGRMDKHIEMPYCCFEA 340
T+ LL+ + G + G RII TN D LD A++R GR D+ IE+P E
Sbjct: 270 AEVQRTMMQLLSEMDG-FDDRGDIRIIA-ATNRFDMLDEAILRPGRFDRLIEVPKPAVEG 327
Query: 341 FKVLAKNYLEIESHEL 356
++ L+I + ++
Sbjct: 328 ----RRHILDIHTRDM 339
>sp|Q9V287|PAN_PYRAB Proteasome-activating nucleotidase OS=Pyrococcus abyssi (strain GE5
/ Orsay) GN=pan PE=3 SV=2
Length = 396
Score = 60.5 bits (145), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 50/185 (27%), Positives = 83/185 (44%), Gaps = 31/185 (16%)
Query: 186 FEHP-ATFDTLAMASKKKEAIKKDLIKFTEGKEYYAKIGKAWKRGYLLFGPPGTGKSTMI 244
E P T++ + K+ + +++ + + E + ++G +G LL+GPPG GK+ M
Sbjct: 129 IERPNVTYNDIGGLKKQLQELREAIELPLKHPELFEEVGIDPPKGVLLYGPPGCGKTLMA 188
Query: 245 AAMANCLN---YDVYDLELTS--VENNNELRSLLVDISSKKKKSNVTLSGLLNCIGG--L 297
A+A+ +N V EL + L L +++ K+K + ++ IG +
Sbjct: 189 KALAHEVNATFIRVVGSELVRKYIGEGARLVHELFELA-KEKAPTIIFIDEIDAIGAKRM 247
Query: 298 WSTCGGER----------------------IIVFTTNHVDKLDPALIRRGRMDKHIEMPY 335
T GGER ++ TN D LDPAL+R GR D+ IE+P
Sbjct: 248 DETTGGEREVNRTLMQLLAEMDGFDPRGNVKVIAATNRPDILDPALLRPGRFDRLIEVPL 307
Query: 336 CCFEA 340
FE
Sbjct: 308 PDFEG 312
>sp|O57940|PAN_PYRHO Proteasome-activating nucleotidase OS=Pyrococcus horikoshii (strain
ATCC 700860 / DSM 12428 / JCM 9974 / NBRC 100139 / OT-3)
GN=pan PE=3 SV=1
Length = 399
Score = 60.1 bits (144), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 46/153 (30%), Positives = 69/153 (45%), Gaps = 30/153 (19%)
Query: 217 EYYAKIGKAWKRGYLLFGPPGTGKSTMIAAMANCLN---YDVYDLELTS--VENNNELRS 271
E + ++G +G LL+GPPG GK+ M A+A+ +N V EL + L
Sbjct: 164 ELFEEVGIDPPKGVLLYGPPGCGKTLMAKALAHEVNATFIRVVGSELVRKYIGEGARLVH 223
Query: 272 LLVDISSKKKKSNVTLSGLLNCIGG--LWSTCGGER----------------------II 307
L +++ K+K + ++ IG + T GGER +
Sbjct: 224 ELFELA-KEKAPTIIFIDEIDAIGAKRMDETTGGEREVNRTLMQLLAEMDGFDPRGNVKV 282
Query: 308 VFTTNHVDKLDPALIRRGRMDKHIEMPYCCFEA 340
+ TN D LDPAL+R GR D+ IE+P FE
Sbjct: 283 IAATNRPDILDPALLRPGRFDRLIEVPLPDFEG 315
>sp|B8J992|FTSH_ANAD2 ATP-dependent zinc metalloprotease FtsH OS=Anaeromyxobacter
dehalogenans (strain 2CP-1 / ATCC BAA-258) GN=ftsH PE=3
SV=1
Length = 706
Score = 60.1 bits (144), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 52/204 (25%), Positives = 88/204 (43%), Gaps = 35/204 (17%)
Query: 160 VRNRQRKLYKNVPCQAWYEKKWSHVYFEHPATFDTLAMASKKKEAIK--KDLIKFTEGKE 217
+R +L + P + K + ++ E P T T A+ EA++ +++++F + E
Sbjct: 171 MRRMSGQLGQGPPGVMAFGKSRARIHME-PDTGVTFQDAAGIDEAVEELQEIVEFLKTPE 229
Query: 218 YYAKIGKAWKRGYLLFGPPGTGKSTMIAAMANCLNYDVYDL------ELTSVENNNELRS 271
Y ++G +G LL GPPGTGK+ + A A + L E+ +R
Sbjct: 230 KYRRLGGRIPKGVLLVGPPGTGKTLLARATAGEAGVPFFSLSGSEFVEMFVGVGAARVRD 289
Query: 272 LL---------------VDISSKKKKSNV---------TLSGLLNCIGGLWSTCGGERII 307
L +D K + + + TL+ LL + G + G II
Sbjct: 290 LFAQATQKAPCIVFIDELDALGKSRNAGIMGGHDEREQTLNQLLAEMDGFDARAG--LII 347
Query: 308 VFTTNHVDKLDPALIRRGRMDKHI 331
+ TN + LDPAL+R GR D+ +
Sbjct: 348 MGATNRPEILDPALLRPGRFDRQV 371
>sp|P32794|AFG2_YEAST ATPase family gene 2 protein OS=Saccharomyces cerevisiae (strain
ATCC 204508 / S288c) GN=AFG2 PE=1 SV=1
Length = 780
Score = 60.1 bits (144), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 51/218 (23%), Positives = 93/218 (42%), Gaps = 43/218 (19%)
Query: 177 YEKKWSHVYFE------------HPATFDTLAMASKKKEAIKKDLIKFTEGKEYYAKIGK 224
+ K +H+ F P ++ + K+ E++K + ++ G
Sbjct: 217 FRKGSTHITFSKETQANRKYNLPEPLSYAAVGGLDKEIESLKSAIEIPLHQPTLFSSFGV 276
Query: 225 AWKRGYLLFGPPGTGKSTMIAAMANCLNYDVYDLELTSVENN--NELRSLLVDISSKKKK 282
+ RG LL GPPGTGK+ ++ +AN N V + S+ + E + L DI ++ +K
Sbjct: 277 SPPRGILLHGPPGTGKTMLLRVVANTSNAHVLTINGPSIVSKYLGETEAALRDIFNEARK 336
Query: 283 SNVTL-----------------SG---------LLNCIGGLWSTCGGERIIVFTTNHVDK 316
++ SG LL + G+ + G+ +++ TN +
Sbjct: 337 YQPSIIFIDEIDSIAPNRANDDSGEVESRVVATLLTLMDGMGA--AGKVVVIAATNRPNS 394
Query: 317 LDPALIRRGRMDKHIEMPYCCFEA-FKVLAKNYLEIES 353
+DPAL R GR D+ +E+ +A F +L K + + S
Sbjct: 395 VDPALRRPGRFDQEVEIGIPDVDARFDILTKQFSRMSS 432
Score = 57.0 bits (136), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 49/162 (30%), Positives = 71/162 (43%), Gaps = 33/162 (20%)
Query: 197 MASKKKEAIKKDLIKFTEGKEYYAKIGKAWKRGYLLFGPPGTGKSTMIAAMAN------- 249
+ +K KE I+ L E E +A++G + +G LL+GPPG K+ A+A
Sbjct: 524 LKTKMKEMIQLPL----EASETFARLGISAPKGVLLYGPPGCSKTLTAKALATESGINFL 579
Query: 250 ------CLNYDVYDLELTSVENNNELRSLLVDI--------------SSKKKKSNVTLSG 289
N V + E E + RS I S +N L+
Sbjct: 580 AVKGPEIFNKYVGESERAIREIFRKARSAAPSIIFFDEIDALSPDRDGSSTSAANHVLTS 639
Query: 290 LLNCIGGLWSTCGGERIIVFTTNHVDKLDPALIRRGRMDKHI 331
LLN I G+ G +IV TN D++D AL+R GR+D+HI
Sbjct: 640 LLNEIDGVEELKG--VVIVAATNRPDEIDAALLRPGRLDRHI 679
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.317 0.134 0.402
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 167,077,284
Number of Sequences: 539616
Number of extensions: 7296921
Number of successful extensions: 32898
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 869
Number of HSP's successfully gapped in prelim test: 181
Number of HSP's that attempted gapping in prelim test: 31349
Number of HSP's gapped (non-prelim): 1645
length of query: 431
length of database: 191,569,459
effective HSP length: 120
effective length of query: 311
effective length of database: 126,815,539
effective search space: 39439632629
effective search space used: 39439632629
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 63 (28.9 bits)