Query 035603
Match_columns 431
No_of_seqs 402 out of 2599
Neff 7.5
Searched_HMMs 46136
Date Fri Mar 29 04:26:52 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/035603.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/035603hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0743 AAA+-type ATPase [Post 100.0 2.5E-90 5.5E-95 687.0 37.3 402 3-412 1-445 (457)
2 COG1222 RPT1 ATP-dependent 26S 100.0 6.6E-41 1.4E-45 324.1 15.9 213 189-403 147-394 (406)
3 KOG0730 AAA+-type ATPase [Post 100.0 1.5E-37 3.2E-42 320.1 16.9 214 188-403 429-676 (693)
4 KOG0734 AAA+-type ATPase conta 100.0 2E-35 4.3E-40 296.6 15.3 189 189-380 300-516 (752)
5 KOG0733 Nuclear AAA ATPase (VC 100.0 3.5E-34 7.5E-39 291.6 18.2 191 188-380 506-728 (802)
6 KOG0731 AAA+-type ATPase conta 100.0 7.5E-34 1.6E-38 300.5 18.6 213 188-403 306-555 (774)
7 KOG0733 Nuclear AAA ATPase (VC 100.0 1E-33 2.3E-38 288.1 17.4 207 184-396 180-417 (802)
8 KOG0736 Peroxisome assembly fa 100.0 2.2E-32 4.8E-37 284.5 15.5 190 188-379 667-889 (953)
9 KOG0728 26S proteasome regulat 100.0 2E-32 4.4E-37 253.4 13.0 191 188-380 142-363 (404)
10 KOG0727 26S proteasome regulat 100.0 4.4E-32 9.6E-37 251.5 14.8 192 187-380 148-371 (408)
11 PTZ00454 26S protease regulato 100.0 4.4E-31 9.5E-36 268.7 18.8 214 187-402 139-387 (398)
12 KOG0726 26S proteasome regulat 100.0 9.3E-32 2E-36 253.6 11.0 191 187-379 179-400 (440)
13 KOG0652 26S proteasome regulat 100.0 5.4E-31 1.2E-35 245.2 14.1 212 188-401 166-412 (424)
14 KOG0738 AAA+-type ATPase [Post 100.0 4.3E-30 9.3E-35 250.6 16.5 191 187-380 205-427 (491)
15 COG0465 HflB ATP-dependent Zn 100.0 3.7E-30 8E-35 268.4 15.0 190 188-380 145-365 (596)
16 KOG0729 26S proteasome regulat 100.0 5.2E-30 1.1E-34 239.3 13.7 190 187-380 171-393 (435)
17 PRK03992 proteasome-activating 100.0 2.8E-29 6E-34 256.0 18.1 217 187-405 125-376 (389)
18 KOG0735 AAA+-type ATPase [Post 100.0 3.2E-29 7E-34 258.9 18.4 196 183-380 655-880 (952)
19 PTZ00361 26 proteosome regulat 100.0 3.9E-29 8.4E-34 256.2 18.0 215 186-402 176-425 (438)
20 CHL00195 ycf46 Ycf46; Provisio 100.0 6.9E-29 1.5E-33 257.8 17.7 212 185-403 219-465 (489)
21 TIGR01241 FtsH_fam ATP-depende 100.0 8.9E-29 1.9E-33 260.1 18.7 213 187-402 49-296 (495)
22 TIGR01243 CDC48 AAA family ATP 100.0 1.2E-28 2.5E-33 270.3 20.3 189 189-379 449-666 (733)
23 TIGR03689 pup_AAA proteasome A 100.0 1.3E-28 2.7E-33 255.8 19.1 186 188-379 177-404 (512)
24 COG0464 SpoVK ATPases of the A 100.0 4.8E-28 1.1E-32 254.7 18.6 214 185-400 233-482 (494)
25 COG1223 Predicted ATPase (AAA+ 100.0 6.3E-28 1.4E-32 224.7 15.6 185 188-380 116-329 (368)
26 CHL00176 ftsH cell division pr 100.0 1.8E-27 4E-32 254.3 19.4 213 187-402 177-424 (638)
27 KOG0737 AAA+-type ATPase [Post 100.0 1.2E-27 2.6E-32 233.2 15.9 189 190-380 89-306 (386)
28 KOG0739 AAA+-type ATPase [Post 100.0 2.6E-28 5.7E-33 230.9 10.4 187 185-375 124-340 (439)
29 KOG0651 26S proteasome regulat 99.9 1.4E-27 3E-32 227.3 13.3 213 190-406 129-378 (388)
30 TIGR01242 26Sp45 26S proteasom 99.9 1.6E-26 3.4E-31 234.2 18.0 192 187-380 116-338 (364)
31 CHL00206 ycf2 Ycf2; Provisiona 99.9 5.6E-26 1.2E-30 255.7 15.5 190 215-404 1618-1880(2281)
32 PRK10733 hflB ATP-dependent me 99.9 2.1E-25 4.6E-30 240.4 18.0 210 189-401 148-392 (644)
33 PLN00020 ribulose bisphosphate 99.9 7.3E-24 1.6E-28 208.9 17.3 176 187-366 109-327 (413)
34 KOG0732 AAA+-type ATPase conta 99.9 3E-24 6.5E-29 233.2 15.6 190 188-379 260-483 (1080)
35 KOG0741 AAA+-type ATPase [Post 99.9 8.1E-25 1.8E-29 220.3 9.2 189 190-380 216-450 (744)
36 TIGR01243 CDC48 AAA family ATP 99.9 1.1E-23 2.3E-28 231.3 18.0 189 189-379 174-390 (733)
37 KOG0730 AAA+-type ATPase [Post 99.9 9.8E-24 2.1E-28 218.2 16.2 189 188-380 180-396 (693)
38 KOG0740 AAA+-type ATPase [Post 99.9 8.6E-24 1.9E-28 212.8 13.4 190 188-380 148-366 (428)
39 PF14363 AAA_assoc: Domain ass 99.8 2.8E-19 6E-24 147.3 9.7 83 26-112 1-97 (98)
40 KOG0744 AAA+-type ATPase [Post 99.8 2E-18 4.3E-23 165.8 13.4 155 192-350 141-341 (423)
41 KOG0742 AAA+-type ATPase [Post 99.8 1.3E-17 2.7E-22 164.4 15.6 180 190-380 352-587 (630)
42 PF00004 AAA: ATPase family as 99.7 1.2E-16 2.6E-21 137.2 9.4 104 230-335 1-132 (132)
43 PF05496 RuvB_N: Holliday junc 99.7 3.1E-15 6.7E-20 139.2 17.4 176 187-372 18-216 (233)
44 TIGR02881 spore_V_K stage V sp 99.6 3.2E-14 6.9E-19 137.8 20.2 154 192-352 5-194 (261)
45 CHL00181 cbbX CbbX; Provisiona 99.6 2.2E-14 4.7E-19 140.7 19.0 153 193-352 23-212 (287)
46 PRK00080 ruvB Holliday junctio 99.6 1.5E-14 3.3E-19 144.6 17.2 181 188-378 20-223 (328)
47 TIGR02880 cbbX_cfxQ probable R 99.6 3.9E-14 8.5E-19 138.8 19.2 152 194-352 23-211 (284)
48 TIGR00635 ruvB Holliday juncti 99.6 4.6E-14 9.9E-19 139.5 16.6 175 191-375 2-199 (305)
49 COG0466 Lon ATP-dependent Lon 99.6 2.8E-14 6.1E-19 149.8 14.7 146 194-349 324-508 (782)
50 TIGR00763 lon ATP-dependent pr 99.6 1.3E-13 2.9E-18 152.3 20.8 147 194-350 321-506 (775)
51 PRK14962 DNA polymerase III su 99.6 7.3E-14 1.6E-18 145.5 17.5 144 187-349 8-189 (472)
52 PRK12323 DNA polymerase III su 99.6 5.8E-14 1.2E-18 148.4 15.4 146 187-351 10-198 (700)
53 PRK07003 DNA polymerase III su 99.6 8.5E-14 1.8E-18 148.8 16.8 146 187-351 10-193 (830)
54 PRK14956 DNA polymerase III su 99.6 8.3E-14 1.8E-18 143.7 16.1 146 186-350 11-194 (484)
55 PRK14960 DNA polymerase III su 99.5 8.7E-14 1.9E-18 147.3 16.4 147 187-352 9-193 (702)
56 PRK04195 replication factor C 99.5 1.5E-13 3.2E-18 144.4 18.1 152 180-351 3-175 (482)
57 PF05673 DUF815: Protein of un 99.5 2E-13 4.3E-18 128.8 17.0 164 179-353 13-211 (249)
58 KOG2004 Mitochondrial ATP-depe 99.5 5.7E-14 1.2E-18 146.8 14.0 148 193-350 411-597 (906)
59 PRK14961 DNA polymerase III su 99.5 1.9E-13 4.1E-18 138.6 17.3 145 188-351 11-193 (363)
60 PRK14964 DNA polymerase III su 99.5 1.3E-13 2.7E-18 143.6 16.2 146 187-351 7-190 (491)
61 PRK06645 DNA polymerase III su 99.5 2.7E-13 5.8E-18 142.0 17.9 147 186-351 14-202 (507)
62 PRK14958 DNA polymerase III su 99.5 1.9E-13 4.1E-18 143.8 15.5 145 187-350 10-192 (509)
63 PRK05563 DNA polymerase III su 99.5 5.3E-13 1.1E-17 142.1 17.8 145 188-351 11-193 (559)
64 PHA02544 44 clamp loader, smal 99.5 7.6E-13 1.6E-17 131.4 17.6 149 179-349 9-173 (316)
65 COG2256 MGS1 ATPase related to 99.5 3.9E-13 8.4E-18 133.4 14.2 142 188-349 19-176 (436)
66 PRK07994 DNA polymerase III su 99.5 9.9E-13 2.1E-17 140.7 18.3 144 188-350 11-192 (647)
67 TIGR02397 dnaX_nterm DNA polym 99.5 1.1E-12 2.3E-17 132.3 17.1 147 186-351 7-191 (355)
68 PRK05896 DNA polymerase III su 99.5 1E-12 2.2E-17 139.0 17.3 146 186-350 9-192 (605)
69 PRK14951 DNA polymerase III su 99.5 9.1E-13 2E-17 140.6 17.1 146 187-351 10-198 (618)
70 PRK07133 DNA polymerase III su 99.5 1.1E-12 2.5E-17 141.1 17.9 147 185-350 10-191 (725)
71 PRK14963 DNA polymerase III su 99.5 1.3E-12 2.9E-17 137.1 18.1 145 187-350 8-189 (504)
72 PRK14949 DNA polymerase III su 99.5 1.3E-12 2.8E-17 142.2 18.3 146 187-351 10-193 (944)
73 PRK08691 DNA polymerase III su 99.5 6E-13 1.3E-17 142.1 15.2 172 187-377 10-220 (709)
74 PRK14952 DNA polymerase III su 99.5 1.8E-12 4E-17 137.7 18.1 146 187-351 7-192 (584)
75 PRK07940 DNA polymerase III su 99.5 3.5E-12 7.5E-17 130.1 19.1 147 191-347 3-187 (394)
76 PRK14969 DNA polymerase III su 99.5 9.1E-13 2E-17 139.4 15.1 144 188-350 11-192 (527)
77 PLN03025 replication factor C 99.4 2E-12 4.3E-17 128.9 16.3 146 185-350 5-172 (319)
78 PRK14957 DNA polymerase III su 99.4 2.9E-12 6.3E-17 135.1 17.8 145 187-350 10-192 (546)
79 PRK14965 DNA polymerase III su 99.4 1.9E-12 4.1E-17 138.4 16.2 144 188-350 11-192 (576)
80 PRK14953 DNA polymerase III su 99.4 3.8E-12 8.3E-17 133.3 17.6 147 186-351 9-193 (486)
81 PRK07764 DNA polymerase III su 99.4 3.4E-12 7.4E-17 140.5 17.9 146 186-350 8-193 (824)
82 PRK14970 DNA polymerase III su 99.4 8.6E-12 1.9E-16 126.6 19.3 146 186-350 10-181 (367)
83 PRK06647 DNA polymerase III su 99.4 3.5E-12 7.7E-17 135.6 16.9 145 187-350 10-192 (563)
84 COG2255 RuvB Holliday junction 99.4 1.8E-12 3.9E-17 123.4 13.0 154 188-351 21-196 (332)
85 KOG0736 Peroxisome assembly fa 99.4 2.6E-12 5.7E-17 135.5 14.5 153 223-379 427-607 (953)
86 PRK14959 DNA polymerase III su 99.4 4.8E-12 1.1E-16 134.4 16.4 147 185-350 8-192 (624)
87 PRK09111 DNA polymerase III su 99.4 7.3E-12 1.6E-16 133.8 17.8 147 186-351 17-206 (598)
88 PRK08451 DNA polymerase III su 99.4 1.1E-11 2.3E-16 130.4 18.4 146 187-351 8-191 (535)
89 PRK14954 DNA polymerase III su 99.4 1E-11 2.2E-16 133.0 18.4 144 188-350 11-200 (620)
90 PRK14955 DNA polymerase III su 99.4 5.5E-12 1.2E-16 129.4 15.7 145 187-350 10-200 (397)
91 PRK06305 DNA polymerase III su 99.4 1.4E-11 3E-16 128.1 18.3 145 187-350 11-194 (451)
92 KOG0989 Replication factor C, 99.4 1.5E-12 3.3E-17 125.1 9.8 135 185-339 28-191 (346)
93 PRK13342 recombination factor 99.4 9.1E-12 2E-16 128.5 16.1 141 187-350 6-165 (413)
94 PRK14948 DNA polymerase III su 99.4 2.5E-11 5.4E-16 130.5 18.0 145 186-349 9-193 (620)
95 PRK14971 DNA polymerase III su 99.3 2.7E-11 5.8E-16 130.2 18.1 146 186-350 10-194 (614)
96 PRK12402 replication factor C 99.3 5E-11 1.1E-15 119.1 16.9 149 180-350 4-198 (337)
97 PRK14950 DNA polymerase III su 99.3 5.7E-11 1.2E-15 127.6 17.7 145 187-350 10-193 (585)
98 COG2812 DnaX DNA polymerase II 99.3 1.2E-11 2.7E-16 128.6 12.0 146 188-352 11-194 (515)
99 TIGR02640 gas_vesic_GvpN gas v 99.3 7.5E-11 1.6E-15 114.4 16.4 136 201-350 6-199 (262)
100 PRK11034 clpA ATP-dependent Cl 99.3 3.3E-11 7.1E-16 131.9 15.3 151 194-350 459-667 (758)
101 TIGR02902 spore_lonB ATP-depen 99.3 5E-11 1.1E-15 126.5 15.2 152 185-352 57-279 (531)
102 PRK10787 DNA-binding ATP-depen 99.3 4E-11 8.7E-16 132.0 14.9 146 194-350 323-507 (784)
103 COG2607 Predicted ATPase (AAA+ 99.3 1.8E-10 3.9E-15 107.5 15.5 162 181-351 48-241 (287)
104 PRK00440 rfc replication facto 99.3 2.9E-10 6.2E-15 112.7 18.2 150 180-351 6-176 (319)
105 PRK05564 DNA polymerase III su 99.2 5.1E-10 1.1E-14 111.3 19.4 140 191-349 2-165 (313)
106 TIGR02639 ClpA ATP-dependent C 99.2 4E-11 8.8E-16 132.0 12.6 141 188-350 177-359 (731)
107 KOG0735 AAA+-type ATPase [Post 99.2 1.5E-10 3.3E-15 121.4 15.1 175 193-378 408-617 (952)
108 COG0464 SpoVK ATPases of the A 99.2 1.4E-10 3.1E-15 122.3 14.3 163 213-379 4-194 (494)
109 TIGR02639 ClpA ATP-dependent C 99.2 2.3E-10 5E-15 126.0 15.8 148 193-350 454-663 (731)
110 PRK13341 recombination factor 99.2 1.1E-10 2.4E-15 127.3 12.8 144 187-350 22-182 (725)
111 PRK06893 DNA replication initi 99.2 3.8E-10 8.3E-15 107.3 14.7 151 185-350 8-175 (229)
112 PRK07471 DNA polymerase III su 99.2 2.4E-09 5.2E-14 108.5 19.8 144 187-349 13-213 (365)
113 TIGR03420 DnaA_homol_Hda DnaA 99.2 2.9E-10 6.4E-15 107.1 12.3 148 186-349 8-172 (226)
114 PRK05342 clpX ATP-dependent pr 99.1 1E-09 2.2E-14 112.7 16.2 72 192-263 69-144 (412)
115 smart00763 AAA_PrkA PrkA AAA d 99.1 1.1E-09 2.4E-14 109.5 15.7 64 190-260 47-118 (361)
116 PRK08903 DnaA regulatory inact 99.1 1.2E-09 2.6E-14 103.5 15.1 145 185-349 10-170 (227)
117 COG0714 MoxR-like ATPases [Gen 99.1 2E-09 4.4E-14 107.8 16.7 122 227-350 43-204 (329)
118 PRK09112 DNA polymerase III su 99.1 6.6E-09 1.4E-13 104.7 20.5 143 187-348 17-212 (351)
119 PRK10865 protein disaggregatio 99.1 1.7E-09 3.7E-14 120.7 17.8 142 188-350 173-355 (857)
120 TIGR03345 VI_ClpV1 type VI sec 99.1 1.3E-09 2.8E-14 121.4 16.4 140 188-349 182-363 (852)
121 PRK13407 bchI magnesium chelat 99.1 1.4E-09 3E-14 108.7 14.8 147 188-349 3-216 (334)
122 TIGR00362 DnaA chromosomal rep 99.1 1.2E-09 2.7E-14 112.4 14.6 182 185-379 102-312 (405)
123 TIGR01650 PD_CobS cobaltochela 99.1 5.6E-10 1.2E-14 110.4 11.3 122 226-349 63-233 (327)
124 TIGR00382 clpX endopeptidase C 99.1 2.6E-09 5.7E-14 109.3 15.8 154 194-349 78-331 (413)
125 TIGR02928 orc1/cdc6 family rep 99.1 5E-09 1.1E-13 106.0 17.5 147 192-350 14-213 (365)
126 PRK10865 protein disaggregatio 99.1 3.4E-09 7.4E-14 118.3 17.5 199 192-403 567-826 (857)
127 TIGR00678 holB DNA polymerase 99.1 3E-09 6.4E-14 97.8 14.2 116 226-348 13-167 (188)
128 KOG1969 DNA replication checkp 99.1 6.4E-09 1.4E-13 109.9 17.9 156 179-340 259-472 (877)
129 PRK00149 dnaA chromosomal repl 99.1 2.1E-09 4.6E-14 112.1 14.3 183 185-379 114-324 (450)
130 PRK11034 clpA ATP-dependent Cl 99.1 6.3E-10 1.4E-14 121.9 10.7 137 192-349 185-362 (758)
131 KOG2028 ATPase related to the 99.1 2.1E-09 4.6E-14 105.5 13.0 145 187-348 132-293 (554)
132 PF07728 AAA_5: AAA domain (dy 99.0 2.6E-10 5.6E-15 99.4 5.9 97 229-327 1-139 (139)
133 TIGR02903 spore_lon_C ATP-depe 99.0 5.1E-09 1.1E-13 113.0 16.2 147 188-350 149-367 (615)
134 CHL00081 chlI Mg-protoporyphyr 99.0 1.1E-08 2.4E-13 102.6 16.1 145 189-349 13-232 (350)
135 COG0542 clpA ATP-binding subun 99.0 2.9E-09 6.3E-14 115.1 12.8 198 193-407 491-756 (786)
136 PRK08084 DNA replication initi 99.0 2.5E-09 5.4E-14 102.1 10.9 150 186-349 15-180 (235)
137 PRK05707 DNA polymerase III su 99.0 2.3E-08 5.1E-13 99.9 18.2 116 226-348 21-177 (328)
138 cd00009 AAA The AAA+ (ATPases 99.0 6.1E-09 1.3E-13 89.5 12.2 108 226-335 18-151 (151)
139 TIGR03346 chaperone_ClpB ATP-d 99.0 7.8E-09 1.7E-13 115.7 16.2 152 193-350 565-777 (852)
140 CHL00095 clpC Clp protease ATP 99.0 6.9E-09 1.5E-13 115.7 15.3 152 193-350 509-733 (821)
141 TIGR03345 VI_ClpV1 type VI sec 99.0 5.2E-09 1.1E-13 116.6 14.2 149 193-350 566-781 (852)
142 PRK07399 DNA polymerase III su 99.0 2.2E-08 4.7E-13 99.6 17.1 139 191-349 2-195 (314)
143 PRK00411 cdc6 cell division co 99.0 2.7E-08 5.8E-13 101.8 18.3 146 191-350 28-221 (394)
144 TIGR03346 chaperone_ClpB ATP-d 99.0 8.2E-09 1.8E-13 115.6 15.5 144 188-350 168-350 (852)
145 PRK08058 DNA polymerase III su 98.9 1.3E-08 2.8E-13 102.0 14.6 138 191-347 3-180 (329)
146 CHL00095 clpC Clp protease ATP 98.9 1.1E-08 2.4E-13 114.1 15.2 137 190-348 176-353 (821)
147 PF07726 AAA_3: ATPase family 98.9 7.3E-10 1.6E-14 94.8 4.1 97 229-327 1-129 (131)
148 PHA02244 ATPase-like protein 98.9 1.2E-08 2.5E-13 102.3 13.1 107 227-338 119-263 (383)
149 TIGR02030 BchI-ChlI magnesium 98.9 2.6E-08 5.7E-13 99.7 15.5 144 191-349 2-219 (337)
150 PRK14088 dnaA chromosomal repl 98.9 2E-08 4.4E-13 104.4 13.4 184 185-379 97-307 (440)
151 PTZ00112 origin recognition co 98.9 1.1E-07 2.4E-12 103.4 19.0 147 193-350 755-950 (1164)
152 COG0470 HolB ATPase involved i 98.9 2.2E-08 4.7E-13 99.3 12.8 109 229-344 26-176 (325)
153 PRK08727 hypothetical protein; 98.9 6.3E-08 1.4E-12 92.3 15.2 146 185-349 11-175 (233)
154 PRK05642 DNA replication initi 98.9 6.7E-08 1.4E-12 92.2 15.1 152 185-348 11-178 (234)
155 PRK06620 hypothetical protein; 98.8 5.1E-08 1.1E-12 91.8 13.2 141 187-350 10-161 (214)
156 PRK12422 chromosomal replicati 98.8 2.8E-08 6E-13 103.3 11.9 118 228-352 142-287 (445)
157 PRK11331 5-methylcytosine-spec 98.8 4E-08 8.6E-13 100.9 12.2 106 227-335 194-357 (459)
158 PRK14086 dnaA chromosomal repl 98.8 7.4E-08 1.6E-12 102.5 14.5 182 185-379 280-490 (617)
159 PRK06964 DNA polymerase III su 98.8 8.6E-08 1.9E-12 96.1 14.2 117 225-348 19-203 (342)
160 TIGR02442 Cob-chelat-sub cobal 98.7 9.5E-08 2.1E-12 103.7 12.7 143 191-348 2-213 (633)
161 PF00308 Bac_DnaA: Bacterial d 98.7 2.5E-07 5.5E-12 87.4 13.8 155 189-355 4-185 (219)
162 PRK13531 regulatory ATPase Rav 98.7 1.6E-07 3.5E-12 97.2 13.3 118 227-347 39-192 (498)
163 PF07724 AAA_2: AAA domain (Cd 98.7 1.6E-08 3.5E-13 91.8 5.3 88 228-315 4-131 (171)
164 PF06068 TIP49: TIP49 C-termin 98.7 4.6E-07 9.9E-12 90.3 15.7 65 192-264 23-89 (398)
165 smart00382 AAA ATPases associa 98.7 7.5E-08 1.6E-12 81.7 8.9 37 227-263 2-41 (148)
166 PF03215 Rad17: Rad17 cell cyc 98.7 2.3E-07 4.9E-12 98.0 14.1 70 179-258 7-76 (519)
167 PRK14087 dnaA chromosomal repl 98.7 2E-07 4.3E-12 97.2 13.3 177 189-378 111-320 (450)
168 PRK09087 hypothetical protein; 98.7 1.1E-07 2.5E-12 90.2 10.2 117 228-351 45-168 (226)
169 COG1224 TIP49 DNA helicase TIP 98.7 8.3E-07 1.8E-11 87.5 16.1 64 193-264 39-104 (450)
170 PF13177 DNA_pol3_delta2: DNA 98.7 5.1E-07 1.1E-11 81.2 13.3 103 226-335 18-160 (162)
171 PRK06871 DNA polymerase III su 98.6 2E-06 4.4E-11 85.7 18.4 115 227-348 24-178 (325)
172 COG1474 CDC6 Cdc6-related prot 98.6 1.5E-06 3.3E-11 88.1 17.7 141 195-350 19-204 (366)
173 TIGR00602 rad24 checkpoint pro 98.6 6.4E-07 1.4E-11 96.4 15.0 69 179-257 72-140 (637)
174 PRK07993 DNA polymerase III su 98.6 1.9E-06 4.2E-11 86.4 17.3 115 226-347 23-178 (334)
175 PRK07952 DNA replication prote 98.6 1.6E-07 3.6E-12 89.9 8.6 96 154-263 40-138 (244)
176 KOG0991 Replication factor C, 98.6 4.8E-07 1E-11 84.5 10.8 125 180-323 16-162 (333)
177 PRK08769 DNA polymerase III su 98.6 3.3E-06 7.2E-11 84.0 17.5 115 226-347 25-183 (319)
178 smart00350 MCM minichromosome 98.6 2.5E-07 5.4E-12 98.1 9.8 119 229-350 238-401 (509)
179 PRK08699 DNA polymerase III su 98.5 8.1E-07 1.8E-11 88.8 12.6 115 226-347 20-183 (325)
180 PRK04132 replication factor C 98.5 1.2E-06 2.6E-11 96.7 14.7 112 231-349 568-702 (846)
181 PRK06090 DNA polymerase III su 98.5 1.2E-06 2.5E-11 87.2 13.3 115 226-347 24-178 (319)
182 TIGR00390 hslU ATP-dependent p 98.5 1.9E-07 4E-12 95.1 7.6 70 194-263 13-83 (441)
183 PF01078 Mg_chelatase: Magnesi 98.5 2E-07 4.4E-12 86.4 6.9 46 192-252 2-47 (206)
184 PRK08116 hypothetical protein; 98.5 7.5E-07 1.6E-11 86.7 11.2 139 190-338 82-251 (268)
185 KOG0741 AAA+-type ATPase [Post 98.5 9.4E-07 2E-11 90.8 11.6 117 227-346 538-683 (744)
186 PRK11608 pspF phage shock prot 98.5 7.1E-06 1.5E-10 82.2 17.5 145 192-350 5-195 (326)
187 TIGR00764 lon_rel lon-related 98.4 6.8E-06 1.5E-10 88.7 17.3 50 190-254 15-64 (608)
188 PRK05201 hslU ATP-dependent pr 98.4 3.6E-07 7.7E-12 93.1 7.0 83 194-276 16-107 (443)
189 PF08740 BCS1_N: BCS1 N termin 98.4 4.8E-06 1E-10 76.5 13.9 121 64-195 34-187 (187)
190 TIGR02031 BchD-ChlD magnesium 98.4 2.1E-06 4.5E-11 92.5 13.1 120 228-349 17-174 (589)
191 PRK08939 primosomal protein Dn 98.4 6.5E-07 1.4E-11 88.7 8.5 69 189-262 123-194 (306)
192 KOG1942 DNA helicase, TBP-inte 98.4 2E-05 4.2E-10 76.1 17.1 64 193-264 38-103 (456)
193 PRK11388 DNA-binding transcrip 98.4 1.2E-05 2.6E-10 87.8 18.0 147 190-350 322-511 (638)
194 PRK08181 transposase; Validate 98.4 4.6E-06 9.9E-11 81.1 12.9 36 227-262 106-144 (269)
195 PHA02624 large T antigen; Prov 98.4 6.4E-06 1.4E-10 87.1 14.8 110 223-335 427-561 (647)
196 TIGR01817 nifA Nif-specific re 98.4 1.4E-05 3E-10 85.4 17.3 148 189-350 192-385 (534)
197 TIGR02974 phageshock_pspF psp 98.3 7.3E-06 1.6E-10 82.2 12.9 141 196-350 2-188 (329)
198 PRK12377 putative replication 98.3 3E-06 6.6E-11 81.4 9.3 66 190-262 71-139 (248)
199 COG1239 ChlI Mg-chelatase subu 98.3 7.6E-06 1.6E-10 82.8 12.2 147 189-350 13-233 (423)
200 PF12774 AAA_6: Hydrolytic ATP 98.3 4.9E-05 1.1E-09 72.3 16.5 120 226-348 31-179 (231)
201 PF00158 Sigma54_activat: Sigm 98.2 4.2E-06 9.2E-11 75.8 8.6 119 195-327 1-154 (168)
202 COG0703 AroK Shikimate kinase 98.2 1.1E-06 2.5E-11 79.1 3.5 161 228-400 3-168 (172)
203 PF12775 AAA_7: P-loop contain 98.2 5.7E-06 1.2E-10 80.7 8.4 121 227-350 33-194 (272)
204 PRK10820 DNA-binding transcrip 98.2 4.6E-05 1E-09 81.1 15.8 149 188-350 199-393 (520)
205 COG1484 DnaC DNA replication p 98.2 8.5E-06 1.8E-10 78.7 9.3 66 190-263 76-144 (254)
206 COG1221 PspF Transcriptional r 98.1 4.9E-05 1.1E-09 77.4 14.6 152 188-351 73-266 (403)
207 PRK15429 formate hydrogenlyase 98.1 3.7E-05 8.1E-10 84.6 14.8 64 190-264 373-439 (686)
208 KOG2035 Replication factor C, 98.1 2.8E-05 6.2E-10 74.5 11.7 162 185-366 5-217 (351)
209 PRK06526 transposase; Provisio 98.1 5.9E-06 1.3E-10 79.8 7.2 34 227-260 98-134 (254)
210 PF14532 Sigma54_activ_2: Sigm 98.1 9.6E-06 2.1E-10 70.8 7.9 119 197-335 2-137 (138)
211 PRK06835 DNA replication prote 98.1 1.5E-05 3.3E-10 79.7 10.2 36 228-263 184-222 (329)
212 PRK15424 propionate catabolism 98.1 7E-05 1.5E-09 79.6 15.4 65 190-265 216-291 (538)
213 PRK07261 topology modulation p 98.1 8.6E-06 1.9E-10 73.9 7.3 100 230-350 3-102 (171)
214 PRK05818 DNA polymerase III su 98.1 0.00021 4.6E-09 68.7 16.7 104 226-336 6-147 (261)
215 PF13207 AAA_17: AAA domain; P 98.1 3E-06 6.6E-11 71.6 3.7 31 230-260 2-32 (121)
216 PRK08118 topology modulation p 98.1 1.3E-05 2.9E-10 72.4 8.1 100 229-350 3-102 (167)
217 PRK07132 DNA polymerase III su 98.1 0.00025 5.4E-09 70.1 17.6 114 226-347 17-160 (299)
218 COG1220 HslU ATP-dependent pro 98.1 8.2E-05 1.8E-09 73.2 13.5 70 194-263 16-86 (444)
219 PRK05917 DNA polymerase III su 98.0 7.3E-05 1.6E-09 73.3 13.2 104 226-336 18-154 (290)
220 TIGR02329 propionate_PrpR prop 98.0 5.6E-05 1.2E-09 80.3 13.1 150 187-350 206-402 (526)
221 COG0593 DnaA ATPase involved i 98.0 3.6E-05 7.8E-10 78.5 11.1 154 186-352 80-260 (408)
222 PF01695 IstB_IS21: IstB-like 98.0 4E-06 8.7E-11 76.6 3.3 37 227-263 47-86 (178)
223 PRK05022 anaerobic nitric oxid 98.0 0.00011 2.4E-09 78.0 14.7 146 191-350 185-376 (509)
224 PRK00131 aroK shikimate kinase 98.0 7.5E-06 1.6E-10 73.5 4.8 35 225-259 2-36 (175)
225 PRK09862 putative ATP-dependen 98.0 2.8E-05 6E-10 81.9 9.6 133 190-339 188-391 (506)
226 TIGR03015 pepcterm_ATPase puta 98.0 0.00054 1.2E-08 66.2 17.8 24 229-252 45-68 (269)
227 COG5271 MDN1 AAA ATPase contai 98.0 4E-05 8.6E-10 87.3 10.7 120 226-351 1542-1705(4600)
228 TIGR00368 Mg chelatase-related 98.0 4.4E-05 9.6E-10 80.5 10.7 47 190-251 189-235 (499)
229 COG1219 ClpX ATP-dependent pro 97.9 4.9E-05 1.1E-09 74.2 9.0 37 227-263 97-133 (408)
230 PF08298 AAA_PrkA: PrkA AAA do 97.9 0.00017 3.7E-09 72.0 12.9 62 192-260 59-122 (358)
231 PRK15455 PrkA family serine pr 97.9 1.6E-05 3.6E-10 83.8 5.9 66 188-260 71-137 (644)
232 KOG1051 Chaperone HSP104 and r 97.9 0.00049 1.1E-08 76.2 17.1 115 193-313 562-710 (898)
233 COG3829 RocR Transcriptional r 97.8 0.00021 4.6E-09 74.5 12.9 67 186-263 238-307 (560)
234 PF06309 Torsin: Torsin; Inte 97.8 3.2E-05 6.9E-10 66.2 5.7 53 193-251 25-77 (127)
235 PRK09183 transposase/IS protei 97.8 3.1E-05 6.6E-10 75.1 6.1 36 227-262 102-140 (259)
236 PTZ00111 DNA replication licen 97.8 0.00014 3E-09 80.7 11.7 118 229-348 494-656 (915)
237 KOG0990 Replication factor C, 97.8 3.7E-05 8E-10 75.1 6.5 126 179-323 29-180 (360)
238 COG1936 Predicted nucleotide k 97.8 4.3E-05 9.3E-10 68.6 6.3 29 230-259 3-31 (180)
239 KOG1968 Replication factor C, 97.8 3.9E-05 8.4E-10 85.1 7.1 192 180-379 309-530 (871)
240 KOG0745 Putative ATP-dependent 97.8 9.9E-05 2.1E-09 74.7 9.1 109 227-337 226-387 (564)
241 PF13401 AAA_22: AAA domain; P 97.8 3.1E-05 6.6E-10 66.2 4.6 47 227-273 4-58 (131)
242 PRK13947 shikimate kinase; Pro 97.8 2.6E-05 5.7E-10 70.2 4.3 32 229-260 3-34 (171)
243 PRK03839 putative kinase; Prov 97.7 2.4E-05 5.2E-10 71.3 3.9 30 230-259 3-32 (180)
244 PRK00625 shikimate kinase; Pro 97.7 2.7E-05 5.8E-10 70.9 4.1 32 229-260 2-33 (173)
245 PRK10923 glnG nitrogen regulat 97.7 0.00048 1E-08 72.2 14.1 146 191-350 136-327 (469)
246 PTZ00202 tuzin; Provisional 97.7 0.0012 2.6E-08 67.8 16.1 112 188-311 257-369 (550)
247 cd00464 SK Shikimate kinase (S 97.7 3E-05 6.5E-10 68.3 4.1 30 230-259 2-31 (154)
248 PLN02199 shikimate kinase 97.7 0.00012 2.6E-09 71.7 8.5 34 227-260 102-135 (303)
249 PRK13949 shikimate kinase; Pro 97.7 3.1E-05 6.7E-10 70.1 4.1 33 228-260 2-34 (169)
250 PRK07276 DNA polymerase III su 97.7 0.00099 2.2E-08 65.5 14.9 111 226-346 23-172 (290)
251 PF13671 AAA_33: AAA domain; P 97.7 2.1E-05 4.6E-10 68.3 2.9 28 230-257 2-29 (143)
252 KOG1970 Checkpoint RAD17-RFC c 97.7 4.4E-05 9.4E-10 79.3 5.3 73 179-259 70-142 (634)
253 PF13173 AAA_14: AAA domain 97.7 0.00011 2.5E-09 63.1 7.2 36 228-263 3-40 (128)
254 PTZ00088 adenylate kinase 1; P 97.7 0.00021 4.5E-09 68.0 9.5 117 229-348 8-131 (229)
255 TIGR01313 therm_gnt_kin carboh 97.7 0.00016 3.4E-09 64.7 7.7 29 230-258 1-29 (163)
256 PF03969 AFG1_ATPase: AFG1-lik 97.6 0.00018 3.9E-09 73.0 8.9 31 223-253 58-88 (362)
257 PRK13406 bchD magnesium chelat 97.6 0.0007 1.5E-08 72.8 13.5 111 228-340 26-173 (584)
258 PRK00279 adk adenylate kinase; 97.6 0.00067 1.5E-08 63.7 12.0 29 230-258 3-31 (215)
259 PRK13948 shikimate kinase; Pro 97.6 6.4E-05 1.4E-09 69.0 4.8 36 225-260 8-43 (182)
260 PRK08233 hypothetical protein; 97.6 0.00036 7.9E-09 63.1 9.6 113 228-347 4-118 (182)
261 PRK06921 hypothetical protein; 97.6 0.00011 2.3E-09 71.6 6.3 36 227-262 117-156 (266)
262 PF05729 NACHT: NACHT domain 97.6 0.00032 7E-09 61.9 8.8 24 228-251 1-24 (166)
263 PLN03210 Resistant to P. syrin 97.6 0.0011 2.3E-08 77.3 15.4 60 183-253 174-233 (1153)
264 PRK14532 adenylate kinase; Pro 97.6 6E-05 1.3E-09 69.1 4.0 115 229-347 2-127 (188)
265 TIGR01359 UMP_CMP_kin_fam UMP- 97.6 6.5E-05 1.4E-09 68.4 4.1 29 230-258 2-30 (183)
266 PRK06217 hypothetical protein; 97.6 6.8E-05 1.5E-09 68.6 4.2 102 229-347 3-104 (183)
267 COG0563 Adk Adenylate kinase a 97.6 0.00015 3.3E-09 66.3 6.4 28 229-256 2-29 (178)
268 PF01637 Arch_ATPase: Archaeal 97.6 0.00092 2E-08 62.3 11.9 26 227-252 20-45 (234)
269 COG0606 Predicted ATPase with 97.6 5.7E-05 1.2E-09 77.6 3.8 48 189-251 175-222 (490)
270 cd02021 GntK Gluconate kinase 97.6 6.9E-05 1.5E-09 66.0 3.9 29 230-258 2-30 (150)
271 PRK11361 acetoacetate metaboli 97.6 0.00099 2.1E-08 69.5 13.2 62 192-264 142-206 (457)
272 PRK14531 adenylate kinase; Pro 97.5 8.2E-05 1.8E-09 68.1 4.4 31 228-258 3-33 (183)
273 TIGR02915 PEP_resp_reg putativ 97.5 0.0013 2.7E-08 68.6 13.8 62 192-264 138-202 (445)
274 cd02020 CMPK Cytidine monophos 97.5 7.5E-05 1.6E-09 65.0 3.9 30 230-259 2-31 (147)
275 PF05621 TniB: Bacterial TniB 97.5 0.0023 5E-08 62.8 14.5 170 148-348 9-226 (302)
276 PRK13946 shikimate kinase; Pro 97.5 8E-05 1.7E-09 68.3 4.1 34 227-260 10-43 (184)
277 PRK04040 adenylate kinase; Pro 97.5 0.00047 1E-08 63.6 9.2 30 228-257 3-34 (188)
278 TIGR02237 recomb_radB DNA repa 97.5 0.00039 8.4E-09 64.7 8.7 50 223-273 8-60 (209)
279 PRK08154 anaerobic benzoate ca 97.5 0.0002 4.4E-09 71.2 7.0 58 197-259 108-165 (309)
280 cd01428 ADK Adenylate kinase ( 97.5 9.3E-05 2E-09 67.8 4.1 29 230-258 2-30 (194)
281 PRK05057 aroK shikimate kinase 97.5 0.00011 2.5E-09 66.6 4.5 34 227-260 4-37 (172)
282 PRK13765 ATP-dependent proteas 97.5 0.00021 4.6E-09 77.3 7.2 51 188-253 26-76 (637)
283 KOG0478 DNA replication licens 97.5 0.0026 5.6E-08 67.9 14.8 150 194-347 430-624 (804)
284 PF00931 NB-ARC: NB-ARC domain 97.5 0.0012 2.5E-08 64.3 11.7 147 225-375 17-200 (287)
285 KOG3347 Predicted nucleotide k 97.5 9.6E-05 2.1E-09 64.7 3.5 32 228-259 8-39 (176)
286 PRK03731 aroL shikimate kinase 97.4 0.00014 3E-09 65.5 4.4 32 229-260 4-35 (171)
287 PRK14529 adenylate kinase; Pro 97.4 0.0003 6.6E-09 66.6 6.8 115 230-347 3-126 (223)
288 PRK15115 response regulator Gl 97.4 0.0014 3.1E-08 68.1 12.5 38 227-264 157-197 (444)
289 PRK06762 hypothetical protein; 97.4 0.00018 4E-09 64.4 4.6 33 227-259 2-34 (166)
290 PRK14530 adenylate kinase; Pro 97.4 0.00016 3.4E-09 67.9 4.3 30 229-258 5-34 (215)
291 PRK13808 adenylate kinase; Pro 97.4 0.0016 3.5E-08 65.1 11.6 29 230-258 3-31 (333)
292 COG1102 Cmk Cytidylate kinase 97.4 0.00014 3E-09 64.6 3.5 28 230-257 3-30 (179)
293 PLN02674 adenylate kinase 97.4 0.00038 8.3E-09 66.7 6.9 118 227-348 31-159 (244)
294 PHA00729 NTP-binding motif con 97.4 0.00011 2.4E-09 69.4 3.0 29 229-257 19-47 (226)
295 PHA02774 E1; Provisional 97.4 0.00032 7E-09 74.2 6.6 38 223-260 430-468 (613)
296 COG5245 DYN1 Dynein, heavy cha 97.4 0.0011 2.4E-08 75.6 10.9 122 226-350 1493-1659(3164)
297 PF10443 RNA12: RNA12 protein; 97.4 0.0027 5.8E-08 65.0 12.9 90 307-398 186-299 (431)
298 PRK02496 adk adenylate kinase; 97.4 0.00017 3.8E-09 65.8 4.0 29 230-258 4-32 (184)
299 KOG2680 DNA helicase TIP49, TB 97.4 0.0013 2.9E-08 63.9 10.0 41 223-263 62-104 (454)
300 TIGR01818 ntrC nitrogen regula 97.3 0.0032 7E-08 65.8 13.9 144 193-350 134-323 (463)
301 TIGR01360 aden_kin_iso1 adenyl 97.3 0.0002 4.2E-09 65.2 4.1 30 229-258 5-34 (188)
302 PF13245 AAA_19: Part of AAA d 97.3 0.00033 7.1E-09 54.8 4.7 33 229-261 12-51 (76)
303 PRK14528 adenylate kinase; Pro 97.3 0.00022 4.7E-09 65.6 4.2 30 229-258 3-32 (186)
304 cd00227 CPT Chloramphenicol (C 97.3 0.0002 4.3E-09 65.0 4.0 32 228-259 3-34 (175)
305 PF00910 RNA_helicase: RNA hel 97.3 0.00015 3.3E-09 60.5 2.8 23 230-252 1-23 (107)
306 PRK14737 gmk guanylate kinase; 97.3 0.00089 1.9E-08 61.6 8.1 26 226-251 3-28 (186)
307 cd01123 Rad51_DMC1_radA Rad51_ 97.3 0.0011 2.4E-08 62.8 8.9 51 223-273 15-74 (235)
308 PRK06547 hypothetical protein; 97.3 0.00025 5.4E-09 64.5 4.3 34 226-259 14-47 (172)
309 PRK14021 bifunctional shikimat 97.3 0.00027 5.9E-09 75.6 5.0 53 224-276 2-56 (542)
310 PLN02200 adenylate kinase fami 97.3 0.0003 6.6E-09 67.1 4.7 30 227-256 43-72 (234)
311 TIGR01351 adk adenylate kinase 97.2 0.00027 5.8E-09 66.2 4.0 115 230-348 2-125 (210)
312 PF13191 AAA_16: AAA ATPase do 97.2 0.00018 3.8E-09 65.1 2.5 37 227-263 24-63 (185)
313 smart00072 GuKc Guanylate kina 97.2 0.001 2.2E-08 60.9 7.5 25 227-251 2-26 (184)
314 PRK14527 adenylate kinase; Pro 97.2 0.00031 6.7E-09 64.7 3.9 31 227-257 6-36 (191)
315 COG0542 clpA ATP-binding subun 97.2 0.0031 6.6E-08 69.2 11.7 136 191-347 168-344 (786)
316 PRK04182 cytidylate kinase; Pr 97.2 0.00035 7.5E-09 63.0 3.9 30 229-258 2-31 (180)
317 PRK09825 idnK D-gluconate kina 97.2 0.0049 1.1E-07 56.2 11.2 42 228-271 4-45 (176)
318 cd02019 NK Nucleoside/nucleoti 97.2 0.00058 1.3E-08 52.2 4.4 22 230-251 2-23 (69)
319 COG2204 AtoC Response regulato 97.2 0.0049 1.1E-07 64.1 12.4 75 191-277 139-217 (464)
320 PLN02459 probable adenylate ki 97.2 0.0009 2E-08 64.6 6.6 113 229-348 31-154 (261)
321 PRK01184 hypothetical protein; 97.2 0.00038 8.3E-09 63.5 3.9 29 229-258 3-31 (184)
322 COG1855 ATPase (PilT family) [ 97.1 0.00054 1.2E-08 69.8 5.1 56 179-252 231-288 (604)
323 PF00406 ADK: Adenylate kinase 97.1 0.0003 6.5E-09 62.1 2.8 26 232-257 1-26 (151)
324 PF13238 AAA_18: AAA domain; P 97.1 0.00034 7.4E-09 59.1 2.9 22 230-251 1-22 (129)
325 TIGR02173 cyt_kin_arch cytidyl 97.1 0.00051 1.1E-08 61.5 3.9 29 230-258 3-31 (171)
326 PRK14526 adenylate kinase; Pro 97.1 0.00055 1.2E-08 64.3 4.1 28 230-257 3-30 (211)
327 PRK14722 flhF flagellar biosyn 97.1 0.0018 3.8E-08 65.9 7.9 25 227-251 137-161 (374)
328 cd01120 RecA-like_NTPases RecA 97.1 0.00063 1.4E-08 59.6 4.2 32 230-261 2-36 (165)
329 KOG2227 Pre-initiation complex 97.0 0.0067 1.4E-07 62.4 11.9 151 193-352 150-341 (529)
330 cd02024 NRK1 Nicotinamide ribo 97.0 0.0018 3.8E-08 59.7 7.2 30 230-259 2-32 (187)
331 PHA02530 pseT polynucleotide k 97.0 0.00057 1.2E-08 67.3 4.1 30 228-257 3-33 (300)
332 cd02025 PanK Pantothenate kina 97.0 0.008 1.7E-07 56.8 11.7 34 230-263 2-40 (220)
333 PRK09361 radB DNA repair and r 97.0 0.0016 3.5E-08 61.4 6.7 50 223-273 19-71 (225)
334 TIGR00150 HI0065_YjeE ATPase, 97.0 0.00086 1.9E-08 58.3 4.4 29 226-254 21-49 (133)
335 PF13521 AAA_28: AAA domain; P 97.0 0.00055 1.2E-08 61.2 3.3 26 230-256 2-27 (163)
336 PRK06696 uridine kinase; Valid 97.0 0.002 4.2E-08 60.9 7.2 38 227-264 22-62 (223)
337 cd01394 radB RadB. The archaea 97.0 0.0015 3.3E-08 61.2 6.3 39 223-261 15-56 (218)
338 cd02027 APSK Adenosine 5'-phos 97.0 0.00084 1.8E-08 59.4 4.3 30 230-259 2-34 (149)
339 PF13086 AAA_11: AAA domain; P 97.0 0.00051 1.1E-08 64.0 3.1 22 230-251 20-41 (236)
340 PRK10078 ribose 1,5-bisphospho 97.0 0.00068 1.5E-08 62.2 3.6 31 228-258 3-33 (186)
341 PRK04220 2-phosphoglycerate ki 96.9 0.035 7.5E-07 54.8 15.6 29 226-254 91-119 (301)
342 cd01393 recA_like RecA is a b 96.9 0.0042 9.1E-08 58.4 8.9 52 223-274 15-75 (226)
343 KOG3354 Gluconate kinase [Carb 96.9 0.0014 3E-08 57.9 5.0 49 225-275 10-58 (191)
344 TIGR03574 selen_PSTK L-seryl-t 96.9 0.00088 1.9E-08 64.3 4.2 30 230-259 2-34 (249)
345 PF01583 APS_kinase: Adenylyls 96.9 0.00092 2E-08 59.7 3.7 36 228-263 3-41 (156)
346 PF00625 Guanylate_kin: Guanyl 96.9 0.0086 1.9E-07 54.6 10.2 29 227-255 2-30 (183)
347 PF01745 IPT: Isopentenyl tran 96.9 0.00098 2.1E-08 62.1 3.8 35 229-263 3-37 (233)
348 PRK12339 2-phosphoglycerate ki 96.9 0.0013 2.7E-08 61.2 4.6 29 227-255 3-31 (197)
349 TIGR02012 tigrfam_recA protein 96.8 0.0017 3.7E-08 64.7 5.6 40 223-262 51-93 (321)
350 TIGR00152 dephospho-CoA kinase 96.8 0.0053 1.1E-07 56.3 8.4 31 230-260 2-32 (188)
351 COG2074 2-phosphoglycerate kin 96.8 0.048 1E-06 52.1 14.6 34 223-256 85-118 (299)
352 PRK04301 radA DNA repair and r 96.8 0.005 1.1E-07 61.4 8.7 51 223-273 98-157 (317)
353 COG4650 RtcR Sigma54-dependent 96.8 0.0034 7.3E-08 61.0 7.0 55 225-279 206-266 (531)
354 PRK06851 hypothetical protein; 96.8 0.0043 9.4E-08 62.9 8.2 80 226-336 29-111 (367)
355 PRK06851 hypothetical protein; 96.8 0.011 2.4E-07 60.0 11.1 75 226-333 213-290 (367)
356 PRK09270 nucleoside triphospha 96.8 0.014 3E-07 55.4 11.2 27 227-253 33-59 (229)
357 PRK12723 flagellar biosynthesi 96.8 0.0076 1.6E-07 61.7 9.9 26 226-251 173-198 (388)
358 COG0529 CysC Adenylylsulfate k 96.8 0.0048 1E-07 55.8 7.4 37 227-263 23-62 (197)
359 cd02022 DPCK Dephospho-coenzym 96.8 0.0014 3E-08 59.8 4.1 30 230-260 2-31 (179)
360 cd00983 recA RecA is a bacter 96.8 0.0021 4.6E-08 64.1 5.7 40 223-262 51-93 (325)
361 PRK05541 adenylylsulfate kinas 96.8 0.0017 3.7E-08 58.8 4.5 26 227-252 7-32 (176)
362 PF00519 PPV_E1_C: Papillomavi 96.8 0.0026 5.7E-08 64.1 6.2 35 223-257 258-292 (432)
363 PRK10365 transcriptional regul 96.7 0.016 3.4E-07 60.2 12.2 65 195-271 141-208 (441)
364 PF06745 KaiC: KaiC; InterPro 96.7 0.0014 3E-08 61.9 4.0 40 223-262 15-58 (226)
365 PRK13764 ATPase; Provisional 96.7 0.0017 3.8E-08 69.7 5.1 26 227-252 257-282 (602)
366 TIGR03878 thermo_KaiC_2 KaiC d 96.7 0.0017 3.7E-08 62.9 4.6 39 223-261 32-73 (259)
367 TIGR01618 phage_P_loop phage n 96.7 0.0008 1.7E-08 63.5 2.2 23 227-249 12-34 (220)
368 PF05272 VirE: Virulence-assoc 96.7 0.0076 1.6E-07 56.1 8.7 28 223-250 48-75 (198)
369 KOG1514 Origin recognition com 96.7 0.055 1.2E-06 58.3 15.9 123 228-352 423-592 (767)
370 PF06414 Zeta_toxin: Zeta toxi 96.7 0.0029 6.4E-08 58.6 5.9 39 225-263 13-52 (199)
371 TIGR02236 recomb_radA DNA repa 96.7 0.0038 8.2E-08 62.0 7.1 51 223-273 91-150 (310)
372 cd01124 KaiC KaiC is a circadi 96.7 0.0018 4E-08 58.7 4.5 32 230-261 2-36 (187)
373 COG0467 RAD55 RecA-superfamily 96.7 0.0036 7.8E-08 60.5 6.7 49 223-273 19-70 (260)
374 PRK00889 adenylylsulfate kinas 96.7 0.0021 4.6E-08 58.1 4.7 34 227-260 4-40 (175)
375 PRK12338 hypothetical protein; 96.7 0.0016 3.5E-08 64.7 4.1 30 227-256 4-33 (319)
376 TIGR03877 thermo_KaiC_1 KaiC d 96.7 0.0023 5E-08 61.1 5.0 40 223-262 17-59 (237)
377 PRK06067 flagellar accessory p 96.7 0.0023 5.1E-08 60.7 5.1 39 223-261 21-62 (234)
378 PF00437 T2SE: Type II/IV secr 96.7 0.0022 4.8E-08 62.2 5.0 56 188-254 99-154 (270)
379 TIGR00064 ftsY signal recognit 96.7 0.0043 9.3E-08 60.6 6.9 60 201-261 46-109 (272)
380 TIGR02322 phosphon_PhnN phosph 96.7 0.0016 3.5E-08 59.0 3.7 25 229-253 3-27 (179)
381 PLN02165 adenylate isopentenyl 96.7 0.0019 4.1E-08 64.5 4.4 34 228-261 44-77 (334)
382 COG1485 Predicted ATPase [Gene 96.6 0.0062 1.3E-07 60.7 7.8 30 224-253 62-91 (367)
383 PRK00771 signal recognition pa 96.6 0.0031 6.7E-08 65.5 6.1 63 200-263 69-134 (437)
384 TIGR02782 TrbB_P P-type conjug 96.6 0.0029 6.4E-08 62.6 5.6 25 227-251 132-156 (299)
385 COG3265 GntK Gluconate kinase 96.6 0.0038 8.3E-08 54.8 5.4 39 234-274 2-40 (161)
386 PF03266 NTPase_1: NTPase; In 96.6 0.0016 3.5E-08 58.9 3.2 22 230-251 2-23 (168)
387 PRK05800 cobU adenosylcobinami 96.6 0.0036 7.7E-08 56.8 5.4 35 229-263 3-37 (170)
388 PRK05973 replicative DNA helic 96.6 0.0029 6.3E-08 60.4 4.9 40 223-262 60-102 (237)
389 TIGR02238 recomb_DMC1 meiotic 96.6 0.0067 1.4E-07 60.5 7.7 51 223-273 92-151 (313)
390 PRK14730 coaE dephospho-CoA ki 96.6 0.0022 4.8E-08 59.4 3.9 32 229-260 3-34 (195)
391 PRK12337 2-phosphoglycerate ki 96.6 0.0059 1.3E-07 63.4 7.3 29 226-254 254-282 (475)
392 TIGR02655 circ_KaiC circadian 96.6 0.0047 1E-07 65.3 6.8 39 223-261 17-59 (484)
393 PRK05439 pantothenate kinase; 96.6 0.021 4.6E-07 56.7 11.0 37 227-263 86-127 (311)
394 KOG2228 Origin recognition com 96.5 0.022 4.7E-07 56.6 10.7 144 195-350 26-220 (408)
395 COG4088 Predicted nucleotide k 96.5 0.0012 2.6E-08 61.1 1.9 28 229-256 3-30 (261)
396 PRK11545 gntK gluconate kinase 96.5 0.0019 4E-08 58.1 3.1 27 233-259 1-27 (163)
397 PRK13975 thymidylate kinase; P 96.5 0.0036 7.7E-08 57.5 5.1 27 228-254 3-29 (196)
398 PTZ00301 uridine kinase; Provi 96.5 0.053 1.1E-06 50.9 12.8 22 230-251 6-27 (210)
399 PLN03187 meiotic recombination 96.5 0.0085 1.8E-07 60.4 7.8 51 223-273 122-181 (344)
400 COG3604 FhlA Transcriptional r 96.5 0.013 2.8E-07 60.8 9.1 64 189-263 219-285 (550)
401 PRK08533 flagellar accessory p 96.5 0.0057 1.2E-07 58.2 6.2 37 223-259 20-59 (230)
402 cd00544 CobU Adenosylcobinamid 96.5 0.0066 1.4E-07 55.0 6.2 43 230-273 2-44 (169)
403 PTZ00035 Rad51 protein; Provis 96.4 0.013 2.8E-07 59.1 8.8 51 223-273 114-173 (337)
404 PRK00091 miaA tRNA delta(2)-is 96.4 0.0033 7.2E-08 62.4 4.4 35 227-261 4-38 (307)
405 cd03115 SRP The signal recogni 96.4 0.0036 7.8E-08 56.4 4.3 34 230-263 3-39 (173)
406 PRK09354 recA recombinase A; P 96.4 0.0053 1.2E-07 61.8 5.9 40 223-262 56-98 (349)
407 PRK10416 signal recognition pa 96.4 0.0039 8.4E-08 62.3 4.9 60 200-260 87-150 (318)
408 PRK00300 gmk guanylate kinase; 96.4 0.0031 6.8E-08 58.4 4.0 27 226-252 4-30 (205)
409 TIGR03499 FlhF flagellar biosy 96.4 0.0055 1.2E-07 60.2 5.8 36 227-262 194-234 (282)
410 cd01130 VirB11-like_ATPase Typ 96.4 0.004 8.8E-08 57.1 4.5 26 227-252 25-50 (186)
411 TIGR01425 SRP54_euk signal rec 96.4 0.006 1.3E-07 63.1 6.2 62 200-262 73-138 (429)
412 PRK00081 coaE dephospho-CoA ki 96.4 0.0035 7.6E-08 57.9 4.1 31 229-260 4-34 (194)
413 cd00984 DnaB_C DnaB helicase C 96.4 0.0048 1E-07 58.6 5.1 40 223-262 9-52 (242)
414 PRK06581 DNA polymerase III su 96.4 0.072 1.6E-06 50.9 12.8 117 227-350 15-162 (263)
415 PRK13951 bifunctional shikimat 96.4 0.0032 6.9E-08 66.5 4.2 32 229-260 2-33 (488)
416 COG3283 TyrR Transcriptional r 96.4 0.021 4.6E-07 57.0 9.5 123 181-314 192-344 (511)
417 TIGR01613 primase_Cterm phage/ 96.4 0.013 2.8E-07 58.1 8.3 56 193-255 48-104 (304)
418 TIGR02524 dot_icm_DotB Dot/Icm 96.4 0.0058 1.3E-07 62.0 5.9 24 228-251 135-158 (358)
419 PRK08356 hypothetical protein; 96.4 0.0036 7.8E-08 57.8 4.0 27 229-256 7-33 (195)
420 PRK06761 hypothetical protein; 96.4 0.0035 7.7E-08 61.3 4.1 33 228-260 4-36 (282)
421 TIGR00017 cmk cytidylate kinas 96.4 0.0036 7.8E-08 59.1 4.0 30 229-258 4-33 (217)
422 PRK05703 flhF flagellar biosyn 96.3 0.038 8.3E-07 57.4 11.9 36 227-262 221-261 (424)
423 KOG0480 DNA replication licens 96.3 0.01 2.3E-07 63.0 7.6 155 192-351 344-544 (764)
424 PRK10867 signal recognition pa 96.3 0.0064 1.4E-07 63.1 6.0 63 200-263 73-140 (433)
425 PRK00023 cmk cytidylate kinase 96.3 0.0031 6.8E-08 59.8 3.4 33 228-260 5-37 (225)
426 TIGR03263 guanyl_kin guanylate 96.3 0.0031 6.8E-08 57.0 3.3 26 228-253 2-27 (180)
427 cd02028 UMPK_like Uridine mono 96.3 0.0041 8.9E-08 56.8 4.1 34 230-263 2-38 (179)
428 TIGR03881 KaiC_arch_4 KaiC dom 96.3 0.0038 8.3E-08 58.9 3.9 38 223-260 16-56 (229)
429 PRK05480 uridine/cytidine kina 96.3 0.0053 1.2E-07 57.2 4.9 34 227-260 6-40 (209)
430 PF00485 PRK: Phosphoribulokin 96.3 0.0029 6.2E-08 58.4 3.0 23 230-252 2-24 (194)
431 PF13555 AAA_29: P-loop contai 96.3 0.0045 9.7E-08 46.4 3.4 23 229-251 25-47 (62)
432 TIGR00235 udk uridine kinase. 96.3 0.0037 8E-08 58.3 3.6 26 228-253 7-32 (207)
433 PRK04328 hypothetical protein; 96.3 0.004 8.7E-08 59.9 4.0 40 223-262 19-61 (249)
434 PLN02842 nucleotide kinase 96.3 0.027 5.8E-07 59.4 10.3 27 231-257 1-27 (505)
435 TIGR03880 KaiC_arch_3 KaiC dom 96.3 0.0062 1.3E-07 57.4 5.1 40 223-262 12-54 (224)
436 PRK13833 conjugal transfer pro 96.3 0.0065 1.4E-07 60.7 5.5 25 227-251 144-168 (323)
437 PF01202 SKI: Shikimate kinase 96.3 0.0026 5.6E-08 56.8 2.4 26 236-261 1-26 (158)
438 cd01672 TMPK Thymidine monopho 96.3 0.0046 9.9E-08 56.4 4.1 45 230-274 3-51 (200)
439 cd02023 UMPK Uridine monophosp 96.2 0.0055 1.2E-07 56.5 4.5 22 230-251 2-23 (198)
440 TIGR02239 recomb_RAD51 DNA rep 96.2 0.016 3.6E-07 57.8 8.2 51 223-273 92-151 (316)
441 TIGR02525 plasmid_TraJ plasmid 96.2 0.0085 1.9E-07 61.0 6.2 23 229-251 151-173 (372)
442 cd00071 GMPK Guanosine monopho 96.2 0.0045 9.8E-08 54.0 3.7 25 230-254 2-26 (137)
443 PRK09518 bifunctional cytidyla 96.2 0.0041 8.8E-08 68.9 4.0 30 229-258 3-32 (712)
444 TIGR00554 panK_bact pantothena 96.2 0.056 1.2E-06 53.3 11.6 26 227-252 62-87 (290)
445 PLN03186 DNA repair protein RA 96.2 0.018 3.9E-07 58.1 8.3 51 223-273 119-178 (342)
446 TIGR00174 miaA tRNA isopenteny 96.2 0.0051 1.1E-07 60.4 4.2 33 230-262 2-34 (287)
447 PF02367 UPF0079: Uncharacteri 96.2 0.0047 1E-07 52.9 3.5 29 226-254 14-42 (123)
448 PRK14738 gmk guanylate kinase; 96.2 0.0041 8.8E-08 58.1 3.4 25 226-250 12-36 (206)
449 cd01131 PilT Pilus retraction 96.2 0.0039 8.5E-08 57.8 3.2 24 229-252 3-26 (198)
450 PRK12724 flagellar biosynthesi 96.2 0.013 2.8E-07 60.4 7.2 61 201-261 196-261 (432)
451 PF00448 SRP54: SRP54-type pro 96.2 0.0038 8.2E-08 58.0 3.0 26 227-252 1-26 (196)
452 COG4133 CcmA ABC-type transpor 96.2 0.019 4.2E-07 52.5 7.5 26 228-253 29-54 (209)
453 PRK10646 ADP-binding protein; 96.1 0.012 2.7E-07 52.2 6.1 28 227-254 28-55 (153)
454 PF13604 AAA_30: AAA domain; P 96.1 0.0088 1.9E-07 55.4 5.4 36 227-262 18-56 (196)
455 PRK11889 flhF flagellar biosyn 96.1 0.0082 1.8E-07 61.3 5.5 58 199-260 217-277 (436)
456 PRK14974 cell division protein 96.1 0.009 2E-07 60.0 5.6 60 201-260 110-176 (336)
457 PLN02840 tRNA dimethylallyltra 96.1 0.0069 1.5E-07 62.4 4.7 33 228-260 22-54 (421)
458 PRK14733 coaE dephospho-CoA ki 96.1 0.0066 1.4E-07 56.7 4.2 34 228-261 7-40 (204)
459 PTZ00494 tuzin-like protein; P 96.1 0.14 2.9E-06 53.1 13.7 48 216-263 384-431 (664)
460 PRK11823 DNA repair protein Ra 96.0 0.0077 1.7E-07 63.0 5.0 39 223-261 76-117 (446)
461 PRK03846 adenylylsulfate kinas 96.0 0.0077 1.7E-07 55.7 4.5 35 226-260 23-60 (198)
462 cd01129 PulE-GspE PulE/GspE Th 96.0 0.011 2.3E-07 57.6 5.7 50 189-252 56-105 (264)
463 PF06431 Polyoma_lg_T_C: Polyo 96.0 0.011 2.4E-07 59.1 5.7 125 200-335 136-285 (417)
464 COG3378 Phage associated DNA p 96.0 0.029 6.4E-07 59.3 9.1 55 192-253 201-256 (517)
465 COG1618 Predicted nucleotide k 95.9 0.0074 1.6E-07 53.8 3.6 26 227-252 5-30 (179)
466 TIGR00376 DNA helicase, putati 95.9 0.0069 1.5E-07 66.1 4.3 34 228-261 174-210 (637)
467 PRK13894 conjugal transfer ATP 95.9 0.0088 1.9E-07 59.7 4.6 25 227-251 148-172 (319)
468 PF00493 MCM: MCM2/3/5 family 95.9 0.0069 1.5E-07 60.8 3.9 121 228-350 58-222 (331)
469 cd01673 dNK Deoxyribonucleosid 95.9 0.0068 1.5E-07 55.6 3.5 27 230-256 2-28 (193)
470 PF08477 Miro: Miro-like prote 95.9 0.007 1.5E-07 50.5 3.2 23 230-252 2-24 (119)
471 PF03029 ATP_bind_1: Conserved 95.9 0.0061 1.3E-07 58.4 3.1 29 232-260 1-32 (238)
472 PF13479 AAA_24: AAA domain 95.9 0.0044 9.5E-08 58.2 2.1 19 229-247 5-23 (213)
473 TIGR01526 nadR_NMN_Atrans nico 95.9 0.0083 1.8E-07 60.1 4.2 30 228-257 163-192 (325)
474 TIGR00455 apsK adenylylsulfate 95.9 0.011 2.3E-07 54.0 4.6 33 227-259 18-53 (184)
475 PRK08099 bifunctional DNA-bind 95.9 0.008 1.7E-07 61.9 4.1 30 227-256 219-248 (399)
476 TIGR00959 ffh signal recogniti 95.9 0.014 3.1E-07 60.5 6.0 64 200-263 72-139 (428)
477 COG1241 MCM2 Predicted ATPase 95.9 0.0083 1.8E-07 65.1 4.4 150 193-348 286-482 (682)
478 TIGR02533 type_II_gspE general 95.8 0.012 2.6E-07 62.2 5.4 55 189-258 218-276 (486)
479 PRK14731 coaE dephospho-CoA ki 95.8 0.01 2.3E-07 55.4 4.4 32 227-259 5-36 (208)
480 cd01122 GP4d_helicase GP4d_hel 95.8 0.01 2.2E-07 57.5 4.4 40 223-262 26-69 (271)
481 PRK12608 transcription termina 95.7 0.017 3.8E-07 58.5 5.9 24 230-253 136-159 (380)
482 cd01918 HprK_C HprK/P, the bif 95.7 0.0085 1.8E-07 53.1 3.2 24 227-250 14-37 (149)
483 cd00820 PEPCK_HprK Phosphoenol 95.7 0.0082 1.8E-07 50.1 2.9 23 226-248 14-36 (107)
484 PF00005 ABC_tran: ABC transpo 95.7 0.0046 9.9E-08 53.2 1.4 29 225-253 9-37 (137)
485 PF04851 ResIII: Type III rest 95.7 0.024 5.2E-07 50.6 6.1 34 226-259 24-57 (184)
486 PRK13477 bifunctional pantoate 95.7 0.0094 2E-07 63.1 3.8 30 228-257 285-314 (512)
487 COG2805 PilT Tfp pilus assembl 95.7 0.015 3.2E-07 56.9 4.8 48 187-253 103-151 (353)
488 PRK07667 uridine kinase; Provi 95.7 0.012 2.7E-07 54.2 4.2 35 228-262 18-55 (193)
489 PF07931 CPT: Chloramphenicol 95.7 0.013 2.7E-07 53.4 4.1 34 228-261 2-35 (174)
490 PRK03333 coaE dephospho-CoA ki 95.7 0.02 4.4E-07 58.9 6.1 31 230-261 4-34 (395)
491 PRK10536 hypothetical protein; 95.7 0.015 3.2E-07 56.1 4.8 22 229-250 76-97 (262)
492 cd00046 DEXDc DEAD-like helica 95.6 0.0095 2.1E-07 50.0 3.1 25 228-252 1-25 (144)
493 TIGR00041 DTMP_kinase thymidyl 95.6 0.0078 1.7E-07 55.2 2.8 25 229-253 5-29 (195)
494 COG0324 MiaA tRNA delta(2)-iso 95.6 0.012 2.7E-07 58.0 4.2 37 227-263 3-39 (308)
495 PRK13973 thymidylate kinase; P 95.6 0.021 4.6E-07 53.5 5.6 46 229-274 5-54 (213)
496 PRK13900 type IV secretion sys 95.6 0.02 4.2E-07 57.6 5.6 28 226-253 159-186 (332)
497 cd01983 Fer4_NifH The Fer4_Nif 95.6 0.017 3.7E-07 45.6 4.1 30 230-259 2-34 (99)
498 PRK09302 circadian clock prote 95.5 0.026 5.7E-07 60.0 6.7 39 223-261 27-69 (509)
499 COG4619 ABC-type uncharacteriz 95.5 0.01 2.3E-07 53.4 2.8 26 227-252 29-54 (223)
500 COG4178 ABC-type uncharacteriz 95.5 0.0092 2E-07 63.8 2.8 28 223-250 415-442 (604)
No 1
>KOG0743 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.5e-90 Score=687.03 Aligned_cols=402 Identities=49% Similarity=0.771 Sum_probs=370.2
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHhccccCCceEEEEEeecCCCCCcchhHHHHHHHhcCCCCCC
Q 035603 3 GETWGSLGSTLATFMFVFAMFKQHIPRQAWYFLEKHCHKLVSLLNPYLEIAFYEFSSNNFLRNKAYSEIQSYLSGREETS 82 (431)
Q Consensus 3 ~~~~~~~~S~~a~~m~~~~~~~~~~p~~l~~~l~~~~~~l~~~~~~~~ti~i~e~~~~~~~~~~~y~~~~~yls~~~~~~ 82 (431)
+.+|+.+||.+|++||+|+|+++++|..++.|+.++.++|++++++|.++++.|+.+ +.+|++|.+++.||+++. +
T Consensus 1 ~~~~~~~~s~~~~~~~~~~~~~~~~p~~~~~y~~~~~~~l~g~~s~~~~~~~~e~~g--~~~n~~~~aie~yl~~k~--~ 76 (457)
T KOG0743|consen 1 SSVFTAYASLLGSLMFIKSMLQDIIPPSINPYFISALRGLFGVFSSYALIRIGEQDG--VFRNQLYVAIEVYLSSKS--S 76 (457)
T ss_pred CCccchhHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHhhccCcccEEEEeehhcc--chHHHHHHHHHHhhhccc--h
Confidence 368999999999999999999999999999999999999999999999999999854 889999999999999998 6
Q ss_pred CCccceE-------------ecCCCceeeeecCeEEEEEEeeccCCCCceeecCCCCCceEEEEEEeccchhhhhhhhHH
Q 035603 83 LHASRFK-------------ADDYEEVSDEYKGVRVWWVLGKKVPRTPVVYFYPGSYDERHYTLTFHKRYRELITGEYVN 149 (431)
Q Consensus 83 ~~~~~l~-------------~~~~~~~~d~f~g~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~v~~~yl~ 149 (431)
+.+.+++ ++++++|.|+|+|++++|.+....++.+.+. +...++|+|+|+|+++||++|+.+||+
T Consensus 77 ~~~~rl~~~~~~~s~~~~l~~~~~~~i~d~f~gv~~~w~~~~~~~~~~~~~--~~~~~~r~~~L~f~k~~~e~V~~syl~ 154 (457)
T KOG0743|consen 77 AIAKRLTQNLSKNSKSLVLGLDDNEEISDEFEGVPVKWRHFVDYNEKWIFV--EREREKRYFELTFHKKPRELVTLSYLP 154 (457)
T ss_pred hhhhhhhhhhccccccceEEecCCcEEEEEEeceEEEEEEEEEecCccccc--ccCCcceEEEEEecCccHHHhHHhHHH
Confidence 6665544 6889999999999999999998776655443 556678999999999999999999999
Q ss_pred HHHHHHHHHHHHhhccceeeccCCcccc---CCcceeeeccCCCCccccccChhhHHHHHHHHHHHHhCHHHHHHhCCCC
Q 035603 150 QVLEEGKAIAVRNRQRKLYKNVPCQAWY---EKKWSHVYFEHPATFDTLAMASKKKEAIKKDLIKFTEGKEYYAKIGKAW 226 (431)
Q Consensus 150 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~w~~~~~~~p~~f~~l~g~~~~k~~i~~~l~~~~~~~~~~~~~g~~~ 226 (431)
|+..++++|..+++++++|+++++..|. +..|++++|+||++|++|++++++|+.|++|+..|++++++|+++|+||
T Consensus 155 ~v~~~~k~I~~~~r~~kl~t~~~~~~~~~~~~~~W~~v~f~HpstF~TlaMd~~~K~~I~~Dl~~F~k~k~~YkrvGkaw 234 (457)
T KOG0743|consen 155 YVVSKAKEILEENRELKLYTNSGKTVIYTAKGGEWRSVGFPHPSTFETLAMDPDLKERIIDDLDDFIKGKDFYKRVGKAW 234 (457)
T ss_pred HHHHHHHHHHHHHHHHHHhhcCCCcccccccCCcceecCCCCCCCccccccChhHHHHHHHHHHHHHhcchHHHhcCcch
Confidence 9999999999999999999999776553 6799999999999999999999999999999999999999999999999
Q ss_pred CceeEEeCCCCCcHHHHHHHHHHHcCCCeEEecccCcCChHHHHHHHHHhhhc------------------------c--
Q 035603 227 KRGYLLFGPPGTGKSTMIAAMANCLNYDVYDLELTSVENNNELRSLLVDISSK------------------------K-- 280 (431)
Q Consensus 227 ~rg~LL~GPPGtGKTsla~aiA~~l~~~i~~l~~~~~~~~~~l~~l~~~~~~~------------------------~-- 280 (431)
+|||||||||||||||++.|||++|+++||+++++++..+++|++++..+.++ .
T Consensus 235 KRGYLLYGPPGTGKSS~IaAmAn~L~ydIydLeLt~v~~n~dLr~LL~~t~~kSIivIEDIDcs~~l~~~~~~~~~~~~~ 314 (457)
T KOG0743|consen 235 KRGYLLYGPPGTGKSSFIAAMANYLNYDIYDLELTEVKLDSDLRHLLLATPNKSILLIEDIDCSFDLRERRKKKKENFEG 314 (457)
T ss_pred hccceeeCCCCCCHHHHHHHHHhhcCCceEEeeeccccCcHHHHHHHHhCCCCcEEEEeecccccccccccccccccccC
Confidence 99999999999999999999999999999999999999999999999988776 0
Q ss_pred cchhhHHHHHHHHhcCcccCCCCceEEEEecCCCCCCChhhhccCceeEEEEcCCCCHHHHHHHHHHhhchhc-chhHHH
Q 035603 281 KKSNVTLSGLLNCIGGLWSTCGGERIIVFTTNHVDKLDPALIRRGRMDKHIEMPYCCFEAFKVLAKNYLEIES-HELFHE 359 (431)
Q Consensus 281 ~~~~~~~s~lL~~ldg~~~~~~~~~ivI~TTN~~~~Ld~AllRpGRfd~~I~~~~p~~~~r~~i~~~~l~~~~-~~~~~~ 359 (431)
..+.+++|+|||++||+||+||+++||||||||+|+|||||+||||||+||+|++|++++++.|+++||+... |.++++
T Consensus 315 ~~~~VTlSGLLNfiDGlwSscg~ERIivFTTNh~EkLDPALlRpGRmDmhI~mgyCtf~~fK~La~nYL~~~~~h~L~~e 394 (457)
T KOG0743|consen 315 DLSRVTLSGLLNFLDGLWSSCGDERIIVFTTNHKEKLDPALLRPGRMDMHIYMGYCTFEAFKTLASNYLGIEEDHRLFDE 394 (457)
T ss_pred CcceeehHHhhhhhccccccCCCceEEEEecCChhhcCHhhcCCCcceeEEEcCCCCHHHHHHHHHHhcCCCCCcchhHH
Confidence 1345899999999999999999999999999999999999999999999999999999999999999999874 999999
Q ss_pred HHhHhccCCCCHHHHHHHhcccCCCCCHHHHHHHHHHHHHHHHHHHHhhhchh
Q 035603 360 IGSLLGETDITPADVAENLMPKSDEDDAGTCLKNLIEALKAAKEKAKKNAGEE 412 (431)
Q Consensus 360 i~~l~~~~~~s~adI~~~l~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~~~~~ 412 (431)
|+++..++.+|||||++.+|. +..|++.|++.++++++.++.+..+...+.
T Consensus 395 ie~l~~~~~~tPA~V~e~lm~--~~~dad~~lk~Lv~~l~~~~~~~~~~~~~~ 445 (457)
T KOG0743|consen 395 IERLIEETEVTPAQVAEELMK--NKNDADVALKGLVEALESKKEKRNKDDKEL 445 (457)
T ss_pred HHHHhhcCccCHHHHHHHHhh--ccccHHHHHHHHHHHHHhhhhhhccchhhh
Confidence 999999999999999999996 333999999999999999987666544444
No 2
>COG1222 RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=6.6e-41 Score=324.11 Aligned_cols=213 Identities=23% Similarity=0.319 Sum_probs=178.6
Q ss_pred CCCccccccChhhHHHHHHHHHHHHhCHHHHHHhCCCCCceeEEeCCCCCcHHHHHHHHHHHcCCCeEEecccCc-----
Q 035603 189 PATFDTLAMASKKKEAIKKDLIKFTEGKEYYAKIGKAWKRGYLLFGPPGTGKSTMIAAMANCLNYDVYDLELTSV----- 263 (431)
Q Consensus 189 p~~f~~l~g~~~~k~~i~~~l~~~~~~~~~~~~~g~~~~rg~LL~GPPGtGKTsla~aiA~~l~~~i~~l~~~~~----- 263 (431)
-.+|++|+|.++++++|.+.+..++.+|+.|.++|+.+|+|+|||||||||||+||+|+|++.+..|+.+..+++
T Consensus 147 dvtY~dIGGL~~Qi~EirE~VELPL~~PElF~~~GI~PPKGVLLYGPPGTGKTLLAkAVA~~T~AtFIrvvgSElVqKYi 226 (406)
T COG1222 147 DVTYEDIGGLDEQIQEIREVVELPLKNPELFEELGIDPPKGVLLYGPPGTGKTLLAKAVANQTDATFIRVVGSELVQKYI 226 (406)
T ss_pred CCChhhccCHHHHHHHHHHHhcccccCHHHHHHcCCCCCCceEeeCCCCCcHHHHHHHHHhccCceEEEeccHHHHHHHh
Confidence 389999999999999999999999999999999999999999999999999999999999999999999998876
Q ss_pred -CChHHHHHHHHHhhhc------------------------ccchhhHHHHHHHHhcCcccCCCCceEEEEecCCCCCCC
Q 035603 264 -ENNNELRSLLVDISSK------------------------KKKSNVTLSGLLNCIGGLWSTCGGERIIVFTTNHVDKLD 318 (431)
Q Consensus 264 -~~~~~l~~l~~~~~~~------------------------~~~~~~~~s~lL~~ldg~~~~~~~~~ivI~TTN~~~~Ld 318 (431)
++..-++++|.-+..+ +..-++++-+||++|||+.+ .+++-|||+||+++.||
T Consensus 227 GEGaRlVRelF~lArekaPsIIFiDEIDAIg~kR~d~~t~gDrEVQRTmleLL~qlDGFD~--~~nvKVI~ATNR~D~LD 304 (406)
T COG1222 227 GEGARLVRELFELAREKAPSIIFIDEIDAIGAKRFDSGTSGDREVQRTMLELLNQLDGFDP--RGNVKVIMATNRPDILD 304 (406)
T ss_pred ccchHHHHHHHHHHhhcCCeEEEEechhhhhcccccCCCCchHHHHHHHHHHHHhccCCCC--CCCeEEEEecCCccccC
Confidence 3445578888777655 23447899999999999965 56699999999999999
Q ss_pred hhhhccCceeEEEEcCCCCHHHHHHHHHHhhchhcchhHHHHHhHhc-cCCCCHHHHHHHhcccC----CCCCHHHHHHH
Q 035603 319 PALIRRGRMDKHIEMPYCCFEAFKVLAKNYLEIESHELFHEIGSLLG-ETDITPADVAENLMPKS----DEDDAGTCLKN 393 (431)
Q Consensus 319 ~AllRpGRfd~~I~~~~p~~~~r~~i~~~~l~~~~~~~~~~i~~l~~-~~~~s~adI~~~l~~~~----~~~~~~~~l~~ 393 (431)
|||+||||||++|+||+|+.+.|+.|++.|.........-+++.++. ..|+|+|||+.+|..+. ..+...+..++
T Consensus 305 PALLRPGR~DRkIEfplPd~~gR~~Il~IHtrkM~l~~dvd~e~la~~~~g~sGAdlkaictEAGm~AiR~~R~~Vt~~D 384 (406)
T COG1222 305 PALLRPGRFDRKIEFPLPDEEGRAEILKIHTRKMNLADDVDLELLARLTEGFSGADLKAICTEAGMFAIRERRDEVTMED 384 (406)
T ss_pred hhhcCCCcccceeecCCCCHHHHHHHHHHHhhhccCccCcCHHHHHHhcCCCchHHHHHHHHHHhHHHHHhccCeecHHH
Confidence 99999999999999999999999999999987665444444556665 34999999998876421 11222345567
Q ss_pred HHHHHHHHHH
Q 035603 394 LIEALKAAKE 403 (431)
Q Consensus 394 l~~~l~~~~~ 403 (431)
|++|.++...
T Consensus 385 F~~Av~KV~~ 394 (406)
T COG1222 385 FLKAVEKVVK 394 (406)
T ss_pred HHHHHHHHHh
Confidence 7777766544
No 3
>KOG0730 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.5e-37 Score=320.13 Aligned_cols=214 Identities=22% Similarity=0.323 Sum_probs=183.5
Q ss_pred CCCCccccccChhhHHHHHHHHHHHHhCHHHHHHhCCCCCceeEEeCCCCCcHHHHHHHHHHHcCCCeEEecccCc----
Q 035603 188 HPATFDTLAMASKKKEAIKKDLIKFTEGKEYYAKIGKAWKRGYLLFGPPGTGKSTMIAAMANCLNYDVYDLELTSV---- 263 (431)
Q Consensus 188 ~p~~f~~l~g~~~~k~~i~~~l~~~~~~~~~~~~~g~~~~rg~LL~GPPGtGKTsla~aiA~~l~~~i~~l~~~~~---- 263 (431)
+..+|++|+|.+++|.+|.+.+..++.+++.|.++|+.+|+|+|||||||||||++|+|+|++.+++|+.+...++
T Consensus 429 p~v~W~dIGGlE~lK~elq~~V~~p~~~pe~F~r~Gi~ppkGVLlyGPPGC~KT~lAkalAne~~~nFlsvkgpEL~sk~ 508 (693)
T KOG0730|consen 429 PNVSWDDIGGLEELKRELQQAVEWPLKHPEKFARFGISPPKGVLLYGPPGCGKTLLAKALANEAGMNFLSVKGPELFSKY 508 (693)
T ss_pred CCCChhhccCHHHHHHHHHHHHhhhhhchHHHHHhcCCCCceEEEECCCCcchHHHHHHHhhhhcCCeeeccCHHHHHHh
Confidence 3489999999999999999999999999999999999999999999999999999999999999999999987765
Q ss_pred --CChHHHHHHHHHhhhc---------------------ccchhhHHHHHHHHhcCcccCCCCceEEEEecCCCCCCChh
Q 035603 264 --ENNNELRSLLVDISSK---------------------KKKSNVTLSGLLNCIGGLWSTCGGERIIVFTTNHVDKLDPA 320 (431)
Q Consensus 264 --~~~~~l~~l~~~~~~~---------------------~~~~~~~~s~lL~~ldg~~~~~~~~~ivI~TTN~~~~Ld~A 320 (431)
+++..++++|..+... .+...+.+++||++|||+... .+++||++||+|+.||+|
T Consensus 509 vGeSEr~ir~iF~kAR~~aP~IiFfDEiDsi~~~R~g~~~~v~~RVlsqLLtEmDG~e~~--k~V~ViAATNRpd~ID~A 586 (693)
T KOG0730|consen 509 VGESERAIREVFRKARQVAPCIIFFDEIDALAGSRGGSSSGVTDRVLSQLLTEMDGLEAL--KNVLVIAATNRPDMIDPA 586 (693)
T ss_pred cCchHHHHHHHHHHHhhcCCeEEehhhHHhHhhccCCCccchHHHHHHHHHHHccccccc--CcEEEEeccCChhhcCHH
Confidence 4567799999887665 234678999999999999654 459999999999999999
Q ss_pred hhccCceeEEEEcCCCCHHHHHHHHHHhhchhcchhHHHHHhHhcc-CCCCHHHHHHHhcccC------CCCCHHHHHHH
Q 035603 321 LIRRGRMDKHIEMPYCCFEAFKVLAKNYLEIESHELFHEIGSLLGE-TDITPADVAENLMPKS------DEDDAGTCLKN 393 (431)
Q Consensus 321 llRpGRfd~~I~~~~p~~~~r~~i~~~~l~~~~~~~~~~i~~l~~~-~~~s~adI~~~l~~~~------~~~~~~~~l~~ 393 (431)
|+||||||..|++|+|+.+.|.+|++.++.........++.+|++. .|||+|||.++|..+. .-+......++
T Consensus 587 LlRPGRlD~iiyVplPD~~aR~~Ilk~~~kkmp~~~~vdl~~La~~T~g~SGAel~~lCq~A~~~a~~e~i~a~~i~~~h 666 (693)
T KOG0730|consen 587 LLRPGRLDRIIYVPLPDLEARLEILKQCAKKMPFSEDVDLEELAQATEGYSGAEIVAVCQEAALLALRESIEATEITWQH 666 (693)
T ss_pred HcCCcccceeEeecCccHHHHHHHHHHHHhcCCCCccccHHHHHHHhccCChHHHHHHHHHHHHHHHHHhcccccccHHH
Confidence 9999999999999999999999999999987665555667888874 4999999999887521 22234455566
Q ss_pred HHHHHHHHHH
Q 035603 394 LIEALKAAKE 403 (431)
Q Consensus 394 l~~~l~~~~~ 403 (431)
+.++++..+.
T Consensus 667 f~~al~~~r~ 676 (693)
T KOG0730|consen 667 FEEALKAVRP 676 (693)
T ss_pred HHHHHHhhcc
Confidence 7677665553
No 4
>KOG0734 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2e-35 Score=296.60 Aligned_cols=189 Identities=23% Similarity=0.352 Sum_probs=168.5
Q ss_pred CCCccccccChhhHHHHHHHHHHHHhCHHHHHHhCCCCCceeEEeCCCCCcHHHHHHHHHHHcCCCeEEecccCc-----
Q 035603 189 PATFDTLAMASKKKEAIKKDLIKFTEGKEYYAKIGKAWKRGYLLFGPPGTGKSTMIAAMANCLNYDVYDLELTSV----- 263 (431)
Q Consensus 189 p~~f~~l~g~~~~k~~i~~~l~~~~~~~~~~~~~g~~~~rg~LL~GPPGtGKTsla~aiA~~l~~~i~~l~~~~~----- 263 (431)
-.+|+||-|-++.|++|.+ +..|+++|..|.++|-..|+|+||.||||||||+||||+|++.+.||+....++.
T Consensus 300 nv~F~dVkG~DEAK~ELeE-iVefLkdP~kftrLGGKLPKGVLLvGPPGTGKTlLARAvAGEA~VPFF~~sGSEFdEm~V 378 (752)
T KOG0734|consen 300 NVTFEDVKGVDEAKQELEE-IVEFLKDPTKFTRLGGKLPKGVLLVGPPGTGKTLLARAVAGEAGVPFFYASGSEFDEMFV 378 (752)
T ss_pred ccccccccChHHHHHHHHH-HHHHhcCcHHhhhccCcCCCceEEeCCCCCchhHHHHHhhcccCCCeEeccccchhhhhh
Confidence 3679999999999999865 8899999999999999999999999999999999999999999999999988875
Q ss_pred -CChHHHHHHHHHhhhc---------------------ccchhhHHHHHHHHhcCcccCCCCceEEEEecCCCCCCChhh
Q 035603 264 -ENNNELRSLLVDISSK---------------------KKKSNVTLSGLLNCIGGLWSTCGGERIIVFTTNHVDKLDPAL 321 (431)
Q Consensus 264 -~~~~~l~~l~~~~~~~---------------------~~~~~~~~s~lL~~ldg~~~~~~~~~ivI~TTN~~~~Ld~Al 321 (431)
.+...++++|..+..+ ....+.++++||.+|||+..+. ++|||++||.|+.||+||
T Consensus 379 GvGArRVRdLF~aAk~~APcIIFIDEiDavG~kR~~~~~~y~kqTlNQLLvEmDGF~qNe--GiIvigATNfpe~LD~AL 456 (752)
T KOG0734|consen 379 GVGARRVRDLFAAAKARAPCIIFIDEIDAVGGKRNPSDQHYAKQTLNQLLVEMDGFKQNE--GIIVIGATNFPEALDKAL 456 (752)
T ss_pred cccHHHHHHHHHHHHhcCCeEEEEechhhhcccCCccHHHHHHHHHHHHHHHhcCcCcCC--ceEEEeccCChhhhhHHh
Confidence 3568899999988776 1145789999999999997654 599999999999999999
Q ss_pred hccCceeEEEEcCCCCHHHHHHHHHHhhchhcchhHHHHHhHhc-cCCCCHHHHHHHhcc
Q 035603 322 IRRGRMDKHIEMPYCCFEAFKVLAKNYLEIESHELFHEIGSLLG-ETDITPADVAENLMP 380 (431)
Q Consensus 322 lRpGRfd~~I~~~~p~~~~r~~i~~~~l~~~~~~~~~~i~~l~~-~~~~s~adI~~~l~~ 380 (431)
+||||||++|.+|.||...|.+|++.|+....+....++.-+++ +.||++||+++++.+
T Consensus 457 ~RPGRFD~~v~Vp~PDv~GR~eIL~~yl~ki~~~~~VD~~iiARGT~GFsGAdLaNlVNq 516 (752)
T KOG0734|consen 457 TRPGRFDRHVTVPLPDVRGRTEILKLYLSKIPLDEDVDPKIIARGTPGFSGADLANLVNQ 516 (752)
T ss_pred cCCCccceeEecCCCCcccHHHHHHHHHhcCCcccCCCHhHhccCCCCCchHHHHHHHHH
Confidence 99999999999999999999999999998766655555667777 559999999988765
No 5
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=3.5e-34 Score=291.63 Aligned_cols=191 Identities=21% Similarity=0.298 Sum_probs=165.9
Q ss_pred CCCCccccccChhhHHHHHHHHHHHHhCHHHHHHhCCCCCceeEEeCCCCCcHHHHHHHHHHHcCCCeEEecccCc----
Q 035603 188 HPATFDTLAMASKKKEAIKKDLIKFTEGKEYYAKIGKAWKRGYLLFGPPGTGKSTMIAAMANCLNYDVYDLELTSV---- 263 (431)
Q Consensus 188 ~p~~f~~l~g~~~~k~~i~~~l~~~~~~~~~~~~~g~~~~rg~LL~GPPGtGKTsla~aiA~~l~~~i~~l~~~~~---- 263 (431)
+-++|++|++.++++.++...+..++++++.|+.+|+..|.|+|||||||||||.||+|+|++.|.+|+.+...++
T Consensus 506 PdVtW~dIGaL~~vR~eL~~aI~~PiK~pd~~k~lGi~~PsGvLL~GPPGCGKTLlAKAVANEag~NFisVKGPELlNkY 585 (802)
T KOG0733|consen 506 PDVTWDDIGALEEVRLELNMAILAPIKRPDLFKALGIDAPSGVLLCGPPGCGKTLLAKAVANEAGANFISVKGPELLNKY 585 (802)
T ss_pred CCCChhhcccHHHHHHHHHHHHhhhccCHHHHHHhCCCCCCceEEeCCCCccHHHHHHHHhhhccCceEeecCHHHHHHH
Confidence 3489999999999999999999999999999999999999999999999999999999999999999999987765
Q ss_pred --CChHHHHHHHHHhhhc---------------------ccchhhHHHHHHHHhcCcccCCCCceEEEEecCCCCCCChh
Q 035603 264 --ENNNELRSLLVDISSK---------------------KKKSNVTLSGLLNCIGGLWSTCGGERIIVFTTNHVDKLDPA 320 (431)
Q Consensus 264 --~~~~~l~~l~~~~~~~---------------------~~~~~~~~s~lL~~ldg~~~~~~~~~ivI~TTN~~~~Ld~A 320 (431)
+++..++.+|..+... ...+.+.+++||.+|||+....+ +.||++||+||.+|||
T Consensus 586 VGESErAVR~vFqRAR~saPCVIFFDEiDaL~p~R~~~~s~~s~RvvNqLLtElDGl~~R~g--V~viaATNRPDiIDpA 663 (802)
T KOG0733|consen 586 VGESERAVRQVFQRARASAPCVIFFDEIDALVPRRSDEGSSVSSRVVNQLLTELDGLEERRG--VYVIAATNRPDIIDPA 663 (802)
T ss_pred hhhHHHHHHHHHHHhhcCCCeEEEecchhhcCcccCCCCchhHHHHHHHHHHHhcccccccc--eEEEeecCCCcccchh
Confidence 4556799999988766 34567899999999999976555 9999999999999999
Q ss_pred hhccCceeEEEEcCCCCHHHHHHHHHHhhchhcc--hhHHHHHhHhc---cCCCCHHHHHHHhcc
Q 035603 321 LIRRGRMDKHIEMPYCCFEAFKVLAKNYLEIESH--ELFHEIGSLLG---ETDITPADVAENLMP 380 (431)
Q Consensus 321 llRpGRfd~~I~~~~p~~~~r~~i~~~~l~~~~~--~~~~~i~~l~~---~~~~s~adI~~~l~~ 380 (431)
++||||||..+++++|+.++|..|++........ ....+++.++. -.|||+||++.++..
T Consensus 664 iLRPGRlDk~LyV~lPn~~eR~~ILK~~tkn~k~pl~~dVdl~eia~~~~c~gftGADLaaLvre 728 (802)
T KOG0733|consen 664 ILRPGRLDKLLYVGLPNAEERVAILKTITKNTKPPLSSDVDLDEIARNTKCEGFTGADLAALVRE 728 (802)
T ss_pred hcCCCccCceeeecCCCHHHHHHHHHHHhccCCCCCCcccCHHHHhhcccccCCchhhHHHHHHH
Confidence 9999999999999999999999999998873222 22223455554 349999999977753
No 6
>KOG0731 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=7.5e-34 Score=300.55 Aligned_cols=213 Identities=24% Similarity=0.337 Sum_probs=177.5
Q ss_pred CCCCccccccChhhHHHHHHHHHHHHhCHHHHHHhCCCCCceeEEeCCCCCcHHHHHHHHHHHcCCCeEEecccCc----
Q 035603 188 HPATFDTLAMASKKKEAIKKDLIKFTEGKEYYAKIGKAWKRGYLLFGPPGTGKSTMIAAMANCLNYDVYDLELTSV---- 263 (431)
Q Consensus 188 ~p~~f~~l~g~~~~k~~i~~~l~~~~~~~~~~~~~g~~~~rg~LL~GPPGtGKTsla~aiA~~l~~~i~~l~~~~~---- 263 (431)
.+.+|+||+|.+++|++|.+ +..|+++|+.|.++|...|||+||+||||||||+||+|+|+|.|.||+.++.++.
T Consensus 306 t~V~FkDVAG~deAK~El~E-~V~fLKNP~~Y~~lGAKiPkGvLL~GPPGTGKTLLAKAiAGEAgVPF~svSGSEFvE~~ 384 (774)
T KOG0731|consen 306 TGVKFKDVAGVDEAKEELME-FVKFLKNPEQYQELGAKIPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSVSGSEFVEMF 384 (774)
T ss_pred CCCccccccCcHHHHHHHHH-HHHHhcCHHHHHHcCCcCcCceEEECCCCCcHHHHHHHHhcccCCceeeechHHHHHHh
Confidence 34889999999999999987 7789999999999999999999999999999999999999999999999999875
Q ss_pred --CChHHHHHHHHHhhhc-------------------------ccchhhHHHHHHHHhcCcccCCCCceEEEEecCCCCC
Q 035603 264 --ENNNELRSLLVDISSK-------------------------KKKSNVTLSGLLNCIGGLWSTCGGERIIVFTTNHVDK 316 (431)
Q Consensus 264 --~~~~~l~~l~~~~~~~-------------------------~~~~~~~~s~lL~~ldg~~~~~~~~~ivI~TTN~~~~ 316 (431)
...+.++.+|..+... ......++++||.+|||+.+. .++||+++||+++.
T Consensus 385 ~g~~asrvr~lf~~ar~~aP~iifideida~~~~r~G~~~~~~~~e~e~tlnQll~emDgf~~~--~~vi~~a~tnr~d~ 462 (774)
T KOG0731|consen 385 VGVGASRVRDLFPLARKNAPSIIFIDEIDAVGRKRGGKGTGGGQDEREQTLNQLLVEMDGFETS--KGVIVLAATNRPDI 462 (774)
T ss_pred cccchHHHHHHHHHhhccCCeEEEecccccccccccccccCCCChHHHHHHHHHHHHhcCCcCC--CcEEEEeccCCccc
Confidence 3478899999887664 223467999999999999765 55999999999999
Q ss_pred CChhhhccCceeEEEEcCCCCHHHHHHHHHHhhchhcch-hHHHHHhHhc-cCCCCHHHHHHHhcccC----CCCCHHHH
Q 035603 317 LDPALIRRGRMDKHIEMPYCCFEAFKVLAKNYLEIESHE-LFHEIGSLLG-ETDITPADVAENLMPKS----DEDDAGTC 390 (431)
Q Consensus 317 Ld~AllRpGRfd~~I~~~~p~~~~r~~i~~~~l~~~~~~-~~~~i~~l~~-~~~~s~adI~~~l~~~~----~~~~~~~~ 390 (431)
||+||+||||||++|.++.|+...|.+|++.|+...... ...++..++. +.|+++|||+++|..+. ........
T Consensus 463 ld~allrpGRfdr~i~i~~p~~~~r~~i~~~h~~~~~~~~e~~dl~~~a~~t~gf~gadl~n~~neaa~~a~r~~~~~i~ 542 (774)
T KOG0731|consen 463 LDPALLRPGRFDRQIQIDLPDVKGRASILKVHLRKKKLDDEDVDLSKLASLTPGFSGADLANLCNEAALLAARKGLREIG 542 (774)
T ss_pred cCHHhcCCCccccceeccCCchhhhHHHHHHHhhccCCCcchhhHHHHHhcCCCCcHHHHHhhhhHHHHHHHHhccCccc
Confidence 999999999999999999999999999999999754432 3445566766 45999999998887521 22233345
Q ss_pred HHHHHHHHHHHHH
Q 035603 391 LKNLIEALKAAKE 403 (431)
Q Consensus 391 l~~l~~~l~~~~~ 403 (431)
..++..++++...
T Consensus 543 ~~~~~~a~~Rvi~ 555 (774)
T KOG0731|consen 543 TKDLEYAIERVIA 555 (774)
T ss_pred hhhHHHHHHHHhc
Confidence 5666666664443
No 7
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1e-33 Score=288.14 Aligned_cols=207 Identities=22% Similarity=0.305 Sum_probs=173.8
Q ss_pred eeccCC-CCccccccChhhHHHHHHHHHHHHhCHHHHHHhCCCCCceeEEeCCCCCcHHHHHHHHHHHcCCCeEEecccC
Q 035603 184 VYFEHP-ATFDTLAMASKKKEAIKKDLIKFTEGKEYYAKIGKAWKRGYLLFGPPGTGKSTMIAAMANCLNYDVYDLELTS 262 (431)
Q Consensus 184 ~~~~~p-~~f~~l~g~~~~k~~i~~~l~~~~~~~~~~~~~g~~~~rg~LL~GPPGtGKTsla~aiA~~l~~~i~~l~~~~ 262 (431)
..++++ .+|.+|+|.+....++.+.+.. +.+|+.|..+|+.++||+|||||||||||+||+|||++++.+|+.++..+
T Consensus 180 ~~~~~snv~f~diGG~d~~~~el~~li~~-i~~Pe~~~~lGv~PprGvLlHGPPGCGKT~lA~AiAgel~vPf~~isApe 258 (802)
T KOG0733|consen 180 LEFPESNVSFSDIGGLDKTLAELCELIIH-IKHPEVFSSLGVRPPRGVLLHGPPGCGKTSLANAIAGELGVPFLSISAPE 258 (802)
T ss_pred cCCCCCCcchhhccChHHHHHHHHHHHHH-hcCchhHhhcCCCCCCceeeeCCCCccHHHHHHHHhhhcCCceEeecchh
Confidence 345554 6899999999999999886665 99999999999999999999999999999999999999999999999876
Q ss_pred c------CChHHHHHHHHHhhhc---------------------ccchhhHHHHHHHHhcCcccC--CCCceEEEEecCC
Q 035603 263 V------ENNNELRSLLVDISSK---------------------KKKSNVTLSGLLNCIGGLWST--CGGERIIVFTTNH 313 (431)
Q Consensus 263 ~------~~~~~l~~l~~~~~~~---------------------~~~~~~~~s~lL~~ldg~~~~--~~~~~ivI~TTN~ 313 (431)
+ +++..++++|.++.+. ....++.+++||+.||++... .+..++||+|||+
T Consensus 259 ivSGvSGESEkkiRelF~~A~~~aPcivFiDeIDAI~pkRe~aqreMErRiVaQLlt~mD~l~~~~~~g~~VlVIgATnR 338 (802)
T KOG0733|consen 259 IVSGVSGESEKKIRELFDQAKSNAPCIVFIDEIDAITPKREEAQREMERRIVAQLLTSMDELSNEKTKGDPVLVIGATNR 338 (802)
T ss_pred hhcccCcccHHHHHHHHHHHhccCCeEEEeecccccccchhhHHHHHHHHHHHHHHHhhhcccccccCCCCeEEEecCCC
Confidence 5 4678899999998876 234578999999999998654 3567999999999
Q ss_pred CCCCChhhhccCceeEEEEcCCCCHHHHHHHHHHhhchhcchhHHHHHhHhcc-CCCCHHHHHHHhcccCCCCCHHHHHH
Q 035603 314 VDKLDPALIRRGRMDKHIEMPYCCFEAFKVLAKNYLEIESHELFHEIGSLLGE-TDITPADVAENLMPKSDEDDAGTCLK 392 (431)
Q Consensus 314 ~~~Ld~AllRpGRfd~~I~~~~p~~~~r~~i~~~~l~~~~~~~~~~i~~l~~~-~~~s~adI~~~l~~~~~~~~~~~~l~ 392 (431)
||.|||||.|+||||+.|.+..|+..+|..|++.......+...-++.+++.- -||.+||++.++.. .+..|++
T Consensus 339 PDslDpaLRRaGRFdrEI~l~vP~e~aR~~IL~~~~~~lrl~g~~d~~qlA~lTPGfVGADL~AL~~~-----Aa~vAik 413 (802)
T KOG0733|consen 339 PDSLDPALRRAGRFDREICLGVPSETAREEILRIICRGLRLSGDFDFKQLAKLTPGFVGADLMALCRE-----AAFVAIK 413 (802)
T ss_pred CcccCHHHhccccccceeeecCCchHHHHHHHHHHHhhCCCCCCcCHHHHHhcCCCccchhHHHHHHH-----HHHHHHH
Confidence 99999999999999999999999999999999998875544444445666663 39999999987763 3345555
Q ss_pred HHHH
Q 035603 393 NLIE 396 (431)
Q Consensus 393 ~l~~ 396 (431)
.+..
T Consensus 414 R~ld 417 (802)
T KOG0733|consen 414 RILD 417 (802)
T ss_pred HHhh
Confidence 5433
No 8
>KOG0736 consensus Peroxisome assembly factor 2 containing the AAA+-type ATPase domain [Posttranslational modification, protein turnover, chaperones]
Probab=99.98 E-value=2.2e-32 Score=284.48 Aligned_cols=190 Identities=23% Similarity=0.277 Sum_probs=158.9
Q ss_pred CCCCccccccChhhHHHHHHHHHHHHhCHHHHHHhCCCCCceeEEeCCCCCcHHHHHHHHHHHcCCCeEEecccCc----
Q 035603 188 HPATFDTLAMASKKKEAIKKDLIKFTEGKEYYAKIGKAWKRGYLLFGPPGTGKSTMIAAMANCLNYDVYDLELTSV---- 263 (431)
Q Consensus 188 ~p~~f~~l~g~~~~k~~i~~~l~~~~~~~~~~~~~g~~~~rg~LL~GPPGtGKTsla~aiA~~l~~~i~~l~~~~~---- 263 (431)
+.++|+||+|.+++|.+|.+.+..++++++.|.. |...+.|+|||||||||||.+|+|+|.++.++|+.+...++
T Consensus 667 PnV~WdDVGGLeevK~eIldTIqlPL~hpeLfss-glrkRSGILLYGPPGTGKTLlAKAVATEcsL~FlSVKGPELLNMY 745 (953)
T KOG0736|consen 667 PNVSWDDVGGLEEVKTEILDTIQLPLKHPELFSS-GLRKRSGILLYGPPGTGKTLLAKAVATECSLNFLSVKGPELLNMY 745 (953)
T ss_pred CccchhcccCHHHHHHHHHHHhcCcccChhhhhc-cccccceeEEECCCCCchHHHHHHHHhhceeeEEeecCHHHHHHH
Confidence 3478999999999999999999999999999975 77778899999999999999999999999999999987765
Q ss_pred --CChHHHHHHHHHhhhc-----------------------ccchhhHHHHHHHHhcCcccCCCCceEEEEecCCCCCCC
Q 035603 264 --ENNNELRSLLVDISSK-----------------------KKKSNVTLSGLLNCIGGLWSTCGGERIIVFTTNHVDKLD 318 (431)
Q Consensus 264 --~~~~~l~~l~~~~~~~-----------------------~~~~~~~~s~lL~~ldg~~~~~~~~~ivI~TTN~~~~Ld 318 (431)
++++++|++|..+.+. .+...+.+|+||-+|||+...+...++||++||+||.||
T Consensus 746 VGqSE~NVR~VFerAR~A~PCVIFFDELDSlAP~RG~sGDSGGVMDRVVSQLLAELDgls~~~s~~VFViGATNRPDLLD 825 (953)
T KOG0736|consen 746 VGQSEENVREVFERARSAAPCVIFFDELDSLAPNRGRSGDSGGVMDRVVSQLLAELDGLSDSSSQDVFVIGATNRPDLLD 825 (953)
T ss_pred hcchHHHHHHHHHHhhccCCeEEEeccccccCccCCCCCCccccHHHHHHHHHHHhhcccCCCCCceEEEecCCCccccC
Confidence 5788999999988765 345578999999999999865667799999999999999
Q ss_pred hhhhccCceeEEEEcCCCC-HHHHHHHHHHhhchhcc---hhHHHHHhHhccCCCCHHHHHHHhc
Q 035603 319 PALIRRGRMDKHIEMPYCC-FEAFKVLAKNYLEIESH---ELFHEIGSLLGETDITPADVAENLM 379 (431)
Q Consensus 319 ~AllRpGRfd~~I~~~~p~-~~~r~~i~~~~l~~~~~---~~~~~i~~l~~~~~~s~adI~~~l~ 379 (431)
|||+||||||+.++++.+. .+.+..+++.....-.. ....+|++.|. .+||+||+=.+|-
T Consensus 826 pALLRPGRFDKLvyvG~~~d~esk~~vL~AlTrkFkLdedVdL~eiAk~cp-~~~TGADlYsLCS 889 (953)
T KOG0736|consen 826 PALLRPGRFDKLVYVGPNEDAESKLRVLEALTRKFKLDEDVDLVEIAKKCP-PNMTGADLYSLCS 889 (953)
T ss_pred hhhcCCCccceeEEecCCccHHHHHHHHHHHHHHccCCCCcCHHHHHhhCC-cCCchhHHHHHHH
Confidence 9999999999999999985 55566666655443222 23334444443 5899999976665
No 9
>KOG0728 consensus 26S proteasome regulatory complex, ATPase RPT6 [Posttranslational modification, protein turnover, chaperones]
Probab=99.98 E-value=2e-32 Score=253.44 Aligned_cols=191 Identities=26% Similarity=0.339 Sum_probs=163.3
Q ss_pred CCCCccccccChhhHHHHHHHHHHHHhCHHHHHHhCCCCCceeEEeCCCCCcHHHHHHHHHHHcCCCeEEecccCc----
Q 035603 188 HPATFDTLAMASKKKEAIKKDLIKFTEGKEYYAKIGKAWKRGYLLFGPPGTGKSTMIAAMANCLNYDVYDLELTSV---- 263 (431)
Q Consensus 188 ~p~~f~~l~g~~~~k~~i~~~l~~~~~~~~~~~~~g~~~~rg~LL~GPPGtGKTsla~aiA~~l~~~i~~l~~~~~---- 263 (431)
+.++++-|+|.+.+.++|.+-+..+.++|+.|..+|++.|+|+|||||||||||.||+|+|++..+.|+.++.+++
T Consensus 142 PDStYeMiGgLd~QIkeIkEVIeLPvKHPELF~aLGIaQPKGvlLygppgtGktLlaraVahht~c~firvsgselvqk~ 221 (404)
T KOG0728|consen 142 PDSTYEMIGGLDKQIKEIKEVIELPVKHPELFEALGIAQPKGVLLYGPPGTGKTLLARAVAHHTDCTFIRVSGSELVQKY 221 (404)
T ss_pred CccHHHHhccHHHHHHHHHHHHhccccCHHHHHhcCCCCCcceEEecCCCCchhHHHHHHHhhcceEEEEechHHHHHHH
Confidence 3478999999999999999999999999999999999999999999999999999999999999999999999876
Q ss_pred --CChHHHHHHHHHhhhc------------------------ccchhhHHHHHHHHhcCcccCCCCceEEEEecCCCCCC
Q 035603 264 --ENNNELRSLLVDISSK------------------------KKKSNVTLSGLLNCIGGLWSTCGGERIIVFTTNHVDKL 317 (431)
Q Consensus 264 --~~~~~l~~l~~~~~~~------------------------~~~~~~~~s~lL~~ldg~~~~~~~~~ivI~TTN~~~~L 317 (431)
++..-++++|.-+... +....+++-.|||.+||+... .++-|||+||+.+.|
T Consensus 222 igegsrmvrelfvmarehapsiifmdeidsigs~r~e~~~ggdsevqrtmlellnqldgfeat--knikvimatnridil 299 (404)
T KOG0728|consen 222 IGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSSRVESGSGGDSEVQRTMLELLNQLDGFEAT--KNIKVIMATNRIDIL 299 (404)
T ss_pred hhhhHHHHHHHHHHHHhcCCceEeeecccccccccccCCCCccHHHHHHHHHHHHhccccccc--cceEEEEeccccccc
Confidence 3344567787655432 223467899999999999765 459999999999999
Q ss_pred ChhhhccCceeEEEEcCCCCHHHHHHHHHHhhchhcchhHHHHHhHhccC-CCCHHHHHHHhcc
Q 035603 318 DPALIRRGRMDKHIEMPYCCFEAFKVLAKNYLEIESHELFHEIGSLLGET-DITPADVAENLMP 380 (431)
Q Consensus 318 d~AllRpGRfd~~I~~~~p~~~~r~~i~~~~l~~~~~~~~~~i~~l~~~~-~~s~adI~~~l~~ 380 (431)
||||+||||+|++|+||+|+.++|.+|++.+-........-+++.+++.. |.|+|+++..|..
T Consensus 300 d~allrpgridrkiefp~p~e~ar~~ilkihsrkmnl~rgi~l~kiaekm~gasgaevk~vcte 363 (404)
T KOG0728|consen 300 DPALLRPGRIDRKIEFPPPNEEARLDILKIHSRKMNLTRGINLRKIAEKMPGASGAEVKGVCTE 363 (404)
T ss_pred cHhhcCCCcccccccCCCCCHHHHHHHHHHhhhhhchhcccCHHHHHHhCCCCccchhhhhhhh
Confidence 99999999999999999999999999999887655433333466666644 9999999988764
No 10
>KOG0727 consensus 26S proteasome regulatory complex, ATPase RPT3 [Posttranslational modification, protein turnover, chaperones]
Probab=99.98 E-value=4.4e-32 Score=251.45 Aligned_cols=192 Identities=25% Similarity=0.364 Sum_probs=162.6
Q ss_pred cCC-CCccccccChhhHHHHHHHHHHHHhCHHHHHHhCCCCCceeEEeCCCCCcHHHHHHHHHHHcCCCeEEecccCc--
Q 035603 187 EHP-ATFDTLAMASKKKEAIKKDLIKFTEGKEYYAKIGKAWKRGYLLFGPPGTGKSTMIAAMANCLNYDVYDLELTSV-- 263 (431)
Q Consensus 187 ~~p-~~f~~l~g~~~~k~~i~~~l~~~~~~~~~~~~~g~~~~rg~LL~GPPGtGKTsla~aiA~~l~~~i~~l~~~~~-- 263 (431)
+.| .++.+|+|.+-+|++|.+.+..++.+.+.|+++|+.+|||+|||||||||||+|++|+|+.....|+.+..++.
T Consensus 148 ekpdvsy~diggld~qkqeireavelplt~~~ly~qigidpprgvllygppg~gktml~kava~~t~a~firvvgsefvq 227 (408)
T KOG0727|consen 148 EKPDVSYADIGGLDVQKQEIREAVELPLTHADLYKQIGIDPPRGVLLYGPPGTGKTMLAKAVANHTTAAFIRVVGSEFVQ 227 (408)
T ss_pred CCCCccccccccchhhHHHHHHHHhccchHHHHHHHhCCCCCcceEEeCCCCCcHHHHHHHHhhccchheeeeccHHHHH
Confidence 445 88999999999999999999999999999999999999999999999999999999999999999999988865
Q ss_pred ----CChHHHHHHHHHhhhc------------------------ccchhhHHHHHHHHhcCcccCCCCceEEEEecCCCC
Q 035603 264 ----ENNNELRSLLVDISSK------------------------KKKSNVTLSGLLNCIGGLWSTCGGERIIVFTTNHVD 315 (431)
Q Consensus 264 ----~~~~~l~~l~~~~~~~------------------------~~~~~~~~s~lL~~ldg~~~~~~~~~ivI~TTN~~~ 315 (431)
++..-++.+|.-+... +....+.+-.|||.|||+... .++-|||+||+.+
T Consensus 228 kylgegprmvrdvfrlakenapsiifideidaiatkrfdaqtgadrevqril~ellnqmdgfdq~--~nvkvimatnrad 305 (408)
T KOG0727|consen 228 KYLGEGPRMVRDVFRLAKENAPSIIFIDEIDAIATKRFDAQTGADREVQRILIELLNQMDGFDQT--TNVKVIMATNRAD 305 (408)
T ss_pred HHhccCcHHHHHHHHHHhccCCcEEEeehhhhHhhhhccccccccHHHHHHHHHHHHhccCcCcc--cceEEEEecCccc
Confidence 3445567777655443 334467889999999999654 4599999999999
Q ss_pred CCChhhhccCceeEEEEcCCCCHHHHHHHHHHhhchhcchhHHHHHhHhc-cCCCCHHHHHHHhcc
Q 035603 316 KLDPALIRRGRMDKHIEMPYCCFEAFKVLAKNYLEIESHELFHEIGSLLG-ETDITPADVAENLMP 380 (431)
Q Consensus 316 ~Ld~AllRpGRfd~~I~~~~p~~~~r~~i~~~~l~~~~~~~~~~i~~l~~-~~~~s~adI~~~l~~ 380 (431)
.|||||+||||+|++|+||+|+..+++-++.............+++.+.. ...+|+|||..+|..
T Consensus 306 tldpallrpgrldrkiefplpdrrqkrlvf~titskm~ls~~vdle~~v~rpdkis~adi~aicqe 371 (408)
T KOG0727|consen 306 TLDPALLRPGRLDRKIEFPLPDRRQKRLVFSTITSKMNLSDEVDLEDLVARPDKISGADINAICQE 371 (408)
T ss_pred ccCHhhcCCccccccccCCCCchhhhhhhHHhhhhcccCCcccCHHHHhcCccccchhhHHHHHHH
Confidence 99999999999999999999999999988887766554444445665554 458999999877763
No 11
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=99.97 E-value=4.4e-31 Score=268.71 Aligned_cols=214 Identities=23% Similarity=0.318 Sum_probs=171.4
Q ss_pred cCCCCccccccChhhHHHHHHHHHHHHhCHHHHHHhCCCCCceeEEeCCCCCcHHHHHHHHHHHcCCCeEEecccCc---
Q 035603 187 EHPATFDTLAMASKKKEAIKKDLIKFTEGKEYYAKIGKAWKRGYLLFGPPGTGKSTMIAAMANCLNYDVYDLELTSV--- 263 (431)
Q Consensus 187 ~~p~~f~~l~g~~~~k~~i~~~l~~~~~~~~~~~~~g~~~~rg~LL~GPPGtGKTsla~aiA~~l~~~i~~l~~~~~--- 263 (431)
.+..+|++|+|.+.+|++|.+.+..++.+++.|.++|+++|+|+|||||||||||++|+++|++++.+++.+..+.+
T Consensus 139 ~p~v~~~digGl~~~k~~l~~~v~~pl~~~~~~~~~Gl~~pkgvLL~GppGTGKT~LAkalA~~l~~~fi~i~~s~l~~k 218 (398)
T PTZ00454 139 KPDVTYSDIGGLDIQKQEIREAVELPLTCPELYEQIGIDPPRGVLLYGPPGTGKTMLAKAVAHHTTATFIRVVGSEFVQK 218 (398)
T ss_pred CCCCCHHHcCCHHHHHHHHHHHHHHHhcCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhcCCCEEEEehHHHHHH
Confidence 34589999999999999999999999999999999999999999999999999999999999999999999876554
Q ss_pred ---CChHHHHHHHHHhhhc------------------------ccchhhHHHHHHHHhcCcccCCCCceEEEEecCCCCC
Q 035603 264 ---ENNNELRSLLVDISSK------------------------KKKSNVTLSGLLNCIGGLWSTCGGERIIVFTTNHVDK 316 (431)
Q Consensus 264 ---~~~~~l~~l~~~~~~~------------------------~~~~~~~~s~lL~~ldg~~~~~~~~~ivI~TTN~~~~ 316 (431)
.+...++.+|..+... +......+..||+.+||+.... +++||+|||+++.
T Consensus 219 ~~ge~~~~lr~lf~~A~~~~P~ILfIDEID~i~~~r~~~~~~~d~~~~r~l~~LL~~ld~~~~~~--~v~VI~aTN~~d~ 296 (398)
T PTZ00454 219 YLGEGPRMVRDVFRLARENAPSIIFIDEVDSIATKRFDAQTGADREVQRILLELLNQMDGFDQTT--NVKVIMATNRADT 296 (398)
T ss_pred hcchhHHHHHHHHHHHHhcCCeEEEEECHhhhccccccccCCccHHHHHHHHHHHHHhhccCCCC--CEEEEEecCCchh
Confidence 2334567777655432 0112356889999999986543 4999999999999
Q ss_pred CChhhhccCceeEEEEcCCCCHHHHHHHHHHhhchhcchhHHHHHhHhc-cCCCCHHHHHHHhcccC----CCCCHHHHH
Q 035603 317 LDPALIRRGRMDKHIEMPYCCFEAFKVLAKNYLEIESHELFHEIGSLLG-ETDITPADVAENLMPKS----DEDDAGTCL 391 (431)
Q Consensus 317 Ld~AllRpGRfd~~I~~~~p~~~~r~~i~~~~l~~~~~~~~~~i~~l~~-~~~~s~adI~~~l~~~~----~~~~~~~~l 391 (431)
||||++||||||.+|+|++|+.++|+.|++.++.........++..++. ..|||||||+.+|..+. ..+......
T Consensus 297 LDpAllR~GRfd~~I~~~~P~~~~R~~Il~~~~~~~~l~~dvd~~~la~~t~g~sgaDI~~l~~eA~~~A~r~~~~~i~~ 376 (398)
T PTZ00454 297 LDPALLRPGRLDRKIEFPLPDRRQKRLIFQTITSKMNLSEEVDLEDFVSRPEKISAADIAAICQEAGMQAVRKNRYVILP 376 (398)
T ss_pred CCHHHcCCCcccEEEEeCCcCHHHHHHHHHHHHhcCCCCcccCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHcCCCccCH
Confidence 9999999999999999999999999999999886543332334556665 34999999998876521 122234566
Q ss_pred HHHHHHHHHHH
Q 035603 392 KNLIEALKAAK 402 (431)
Q Consensus 392 ~~l~~~l~~~~ 402 (431)
+++.+++++..
T Consensus 377 ~df~~A~~~v~ 387 (398)
T PTZ00454 377 KDFEKGYKTVV 387 (398)
T ss_pred HHHHHHHHHHH
Confidence 77777777654
No 12
>KOG0726 consensus 26S proteasome regulatory complex, ATPase RPT2 [Posttranslational modification, protein turnover, chaperones]
Probab=99.97 E-value=9.3e-32 Score=253.58 Aligned_cols=191 Identities=25% Similarity=0.354 Sum_probs=161.2
Q ss_pred cCCCCccccccChhhHHHHHHHHHHHHhCHHHHHHhCCCCCceeEEeCCCCCcHHHHHHHHHHHcCCCeEEecccCc---
Q 035603 187 EHPATFDTLAMASKKKEAIKKDLIKFTEGKEYYAKIGKAWKRGYLLFGPPGTGKSTMIAAMANCLNYDVYDLELTSV--- 263 (431)
Q Consensus 187 ~~p~~f~~l~g~~~~k~~i~~~l~~~~~~~~~~~~~g~~~~rg~LL~GPPGtGKTsla~aiA~~l~~~i~~l~~~~~--- 263 (431)
.+.-+|.+++|.+.+.++|.+.+..++.+|++|...|+.+|+|++|||+||||||.||+|+|+.....|+.+-.+++
T Consensus 179 aP~Ety~diGGle~QiQEiKEsvELPLthPE~YeemGikpPKGVIlyG~PGTGKTLLAKAVANqTSATFlRvvGseLiQk 258 (440)
T KOG0726|consen 179 APQETYADIGGLESQIQEIKESVELPLTHPEYYEEMGIKPPKGVILYGEPGTGKTLLAKAVANQTSATFLRVVGSELIQK 258 (440)
T ss_pred CchhhhcccccHHHHHHHHHHhhcCCCCCHHHHHHcCCCCCCeeEEeCCCCCchhHHHHHHhcccchhhhhhhhHHHHHH
Confidence 34478999999999999999999999999999999999999999999999999999999999999999988877765
Q ss_pred ---CChHHHHHHHHHhhhc------------------------ccchhhHHHHHHHHhcCcccCCCCceEEEEecCCCCC
Q 035603 264 ---ENNNELRSLLVDISSK------------------------KKKSNVTLSGLLNCIGGLWSTCGGERIIVFTTNHVDK 316 (431)
Q Consensus 264 ---~~~~~l~~l~~~~~~~------------------------~~~~~~~~s~lL~~ldg~~~~~~~~~ivI~TTN~~~~ 316 (431)
.+..-++++|.-+... ...-.+++-.|||.+||+.+. +.+-|||+||+++.
T Consensus 259 ylGdGpklvRqlF~vA~e~apSIvFiDEIdAiGtKRyds~SggerEiQrtmLELLNQldGFdsr--gDvKvimATnrie~ 336 (440)
T KOG0726|consen 259 YLGDGPKLVRELFRVAEEHAPSIVFIDEIDAIGTKRYDSNSGGEREIQRTMLELLNQLDGFDSR--GDVKVIMATNRIET 336 (440)
T ss_pred HhccchHHHHHHHHHHHhcCCceEEeehhhhhccccccCCCccHHHHHHHHHHHHHhccCcccc--CCeEEEEecccccc
Confidence 2445567787655433 123467888999999999764 55999999999999
Q ss_pred CChhhhccCceeEEEEcCCCCHHHHHHHHHHhhchhcchhHHHHHhHhc-cCCCCHHHHHHHhc
Q 035603 317 LDPALIRRGRMDKHIEMPYCCFEAFKVLAKNYLEIESHELFHEIGSLLG-ETDITPADVAENLM 379 (431)
Q Consensus 317 Ld~AllRpGRfd~~I~~~~p~~~~r~~i~~~~l~~~~~~~~~~i~~l~~-~~~~s~adI~~~l~ 379 (431)
|||||+||||+|++|+||.|+...++.|+..+.......-...++.++. +..+|+|||+..|.
T Consensus 337 LDPaLiRPGrIDrKIef~~pDe~TkkkIf~IHTs~Mtl~~dVnle~li~~kddlSGAdIkAict 400 (440)
T KOG0726|consen 337 LDPALIRPGRIDRKIEFPLPDEKTKKKIFQIHTSRMTLAEDVNLEELIMTKDDLSGADIKAICT 400 (440)
T ss_pred cCHhhcCCCccccccccCCCchhhhceeEEEeecccchhccccHHHHhhcccccccccHHHHHH
Confidence 9999999999999999999999999999888766543333344666665 45899999997776
No 13
>KOG0652 consensus 26S proteasome regulatory complex, ATPase RPT5 [Posttranslational modification, protein turnover, chaperones]
Probab=99.97 E-value=5.4e-31 Score=245.20 Aligned_cols=212 Identities=23% Similarity=0.295 Sum_probs=171.9
Q ss_pred CCCCccccccChhhHHHHHHHHHHHHhCHHHHHHhCCCCCceeEEeCCCCCcHHHHHHHHHHHcCCCeEEecccCc----
Q 035603 188 HPATFDTLAMASKKKEAIKKDLIKFTEGKEYYAKIGKAWKRGYLLFGPPGTGKSTMIAAMANCLNYDVYDLELTSV---- 263 (431)
Q Consensus 188 ~p~~f~~l~g~~~~k~~i~~~l~~~~~~~~~~~~~g~~~~rg~LL~GPPGtGKTsla~aiA~~l~~~i~~l~~~~~---- 263 (431)
+.-++++|+|.+.+.+++.+.+..++.+++.|.++|+.+|+|+|+|||||||||.+|+|.|...+..|..+-...+
T Consensus 166 PtE~YsDiGGldkQIqELvEAiVLpmth~ekF~~lgi~pPKGvLmYGPPGTGKTlmARAcAaqT~aTFLKLAgPQLVQMf 245 (424)
T KOG0652|consen 166 PTEQYSDIGGLDKQIQELVEAIVLPMTHKEKFENLGIRPPKGVLMYGPPGTGKTLMARACAAQTNATFLKLAGPQLVQMF 245 (424)
T ss_pred CcccccccccHHHHHHHHHHHhccccccHHHHHhcCCCCCCceEeeCCCCCcHHHHHHHHHHhccchHHHhcchHHHhhh
Confidence 3367999999999999999999999999999999999999999999999999999999999999988887765543
Q ss_pred -C-ChHHHHHHHHHhhhc------------------------ccchhhHHHHHHHHhcCcccCCCCceEEEEecCCCCCC
Q 035603 264 -E-NNNELRSLLVDISSK------------------------KKKSNVTLSGLLNCIGGLWSTCGGERIIVFTTNHVDKL 317 (431)
Q Consensus 264 -~-~~~~l~~l~~~~~~~------------------------~~~~~~~~s~lL~~ldg~~~~~~~~~ivI~TTN~~~~L 317 (431)
+ +..-++..|.-+..+ +....+++-.|||.+||+.+. +.+-||++||+.+.|
T Consensus 246 IGdGAkLVRDAFaLAKEkaP~IIFIDElDAIGtKRfDSek~GDREVQRTMLELLNQLDGFss~--~~vKviAATNRvDiL 323 (424)
T KOG0652|consen 246 IGDGAKLVRDAFALAKEKAPTIIFIDELDAIGTKRFDSEKAGDREVQRTMLELLNQLDGFSSD--DRVKVIAATNRVDIL 323 (424)
T ss_pred hcchHHHHHHHHHHhhccCCeEEEEechhhhccccccccccccHHHHHHHHHHHHhhcCCCCc--cceEEEeeccccccc
Confidence 2 334467777666554 234467899999999999765 559999999999999
Q ss_pred ChhhhccCceeEEEEcCCCCHHHHHHHHHHhhchhcchhHHHHHhHhcc-CCCCHHHHHHHhcccC----CCCCHHHHHH
Q 035603 318 DPALIRRGRMDKHIEMPYCCFEAFKVLAKNYLEIESHELFHEIGSLLGE-TDITPADVAENLMPKS----DEDDAGTCLK 392 (431)
Q Consensus 318 d~AllRpGRfd~~I~~~~p~~~~r~~i~~~~l~~~~~~~~~~i~~l~~~-~~~s~adI~~~l~~~~----~~~~~~~~l~ 392 (431)
||||+|.||+|++|+||.|+.++|..|++.+-..........++++++. .+|.+|+.+.+|..+. ..+..+..-+
T Consensus 324 DPALlRSGRLDRKIEfP~Pne~aRarIlQIHsRKMnv~~DvNfeELaRsTddFNGAQcKAVcVEAGMiALRr~atev~he 403 (424)
T KOG0652|consen 324 DPALLRSGRLDRKIEFPHPNEEARARILQIHSRKMNVSDDVNFEELARSTDDFNGAQCKAVCVEAGMIALRRGATEVTHE 403 (424)
T ss_pred CHHHhhcccccccccCCCCChHHHHHHHHHhhhhcCCCCCCCHHHHhhcccccCchhheeeehhhhHHHHhcccccccHH
Confidence 9999999999999999999999999999988766554444456777774 4999999987776421 2223344556
Q ss_pred HHHHHHHHH
Q 035603 393 NLIEALKAA 401 (431)
Q Consensus 393 ~l~~~l~~~ 401 (431)
++++.+...
T Consensus 404 DfmegI~eV 412 (424)
T KOG0652|consen 404 DFMEGILEV 412 (424)
T ss_pred HHHHHHHHH
Confidence 666665543
No 14
>KOG0738 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.97 E-value=4.3e-30 Score=250.57 Aligned_cols=191 Identities=24% Similarity=0.343 Sum_probs=158.8
Q ss_pred cCC-CCccccccChhhHHHHHHHHHHHHhCHHHHHHhCCCCCceeEEeCCCCCcHHHHHHHHHHHcCCCeEEecccCc--
Q 035603 187 EHP-ATFDTLAMASKKKEAIKKDLIKFTEGKEYYAKIGKAWKRGYLLFGPPGTGKSTMIAAMANCLNYDVYDLELTSV-- 263 (431)
Q Consensus 187 ~~p-~~f~~l~g~~~~k~~i~~~l~~~~~~~~~~~~~g~~~~rg~LL~GPPGtGKTsla~aiA~~l~~~i~~l~~~~~-- 263 (431)
.+| ..|+||+|..+.|+-|.+.+..++.-|++|+.+-.|| +|+|++||||||||+||+|+|.+++..|+.++.+.+
T Consensus 205 ~np~ikW~DIagl~~AK~lL~EAVvlPi~mPe~F~GirrPW-kgvLm~GPPGTGKTlLAKAvATEc~tTFFNVSsstltS 283 (491)
T KOG0738|consen 205 RNPNIKWDDIAGLHEAKKLLKEAVVLPIWMPEFFKGIRRPW-KGVLMVGPPGTGKTLLAKAVATECGTTFFNVSSSTLTS 283 (491)
T ss_pred cCCCcChHhhcchHHHHHHHHHHHhhhhhhHHHHhhccccc-ceeeeeCCCCCcHHHHHHHHHHhhcCeEEEechhhhhh
Confidence 344 7899999999999999999999999999999999999 599999999999999999999999999999998887
Q ss_pred ---CChHHHHHHHHHhhhc-----------------------ccchhhHHHHHHHHhcCcccCCCC--ceEEEEecCCCC
Q 035603 264 ---ENNNELRSLLVDISSK-----------------------KKKSNVTLSGLLNCIGGLWSTCGG--ERIIVFTTNHVD 315 (431)
Q Consensus 264 ---~~~~~l~~l~~~~~~~-----------------------~~~~~~~~s~lL~~ldg~~~~~~~--~~ivI~TTN~~~ 315 (431)
+..+.|.+++.+.... +..+++..++||..|||+...... -++|+++||.||
T Consensus 284 KwRGeSEKlvRlLFemARfyAPStIFiDEIDslcs~RG~s~EHEaSRRvKsELLvQmDG~~~t~e~~k~VmVLAATN~PW 363 (491)
T KOG0738|consen 284 KWRGESEKLVRLLFEMARFYAPSTIFIDEIDSLCSQRGGSSEHEASRRVKSELLVQMDGVQGTLENSKVVMVLAATNFPW 363 (491)
T ss_pred hhccchHHHHHHHHHHHHHhCCceeehhhHHHHHhcCCCccchhHHHHHHHHHHHHhhccccccccceeEEEEeccCCCc
Confidence 2344555554443322 556788999999999999653322 267888999999
Q ss_pred CCChhhhccCceeEEEEcCCCCHHHHHHHHHHhhchhcchhHHHHHhHhccC-CCCHHHHHHHhcc
Q 035603 316 KLDPALIRRGRMDKHIEMPYCCFEAFKVLAKNYLEIESHELFHEIGSLLGET-DITPADVAENLMP 380 (431)
Q Consensus 316 ~Ld~AllRpGRfd~~I~~~~p~~~~r~~i~~~~l~~~~~~~~~~i~~l~~~~-~~s~adI~~~l~~ 380 (431)
.||.||+| ||...|++|+|+.++|..|++..++.........++.++++. |||++||..+|..
T Consensus 364 diDEAlrR--RlEKRIyIPLP~~~~R~~Li~~~l~~~~~~~~~~~~~lae~~eGySGaDI~nvCre 427 (491)
T KOG0738|consen 364 DIDEALRR--RLEKRIYIPLPDAEARSALIKILLRSVELDDPVNLEDLAERSEGYSGADITNVCRE 427 (491)
T ss_pred chHHHHHH--HHhhheeeeCCCHHHHHHHHHHhhccccCCCCccHHHHHHHhcCCChHHHHHHHHH
Confidence 99999999 999999999999999999999998754433333455566543 9999999988863
No 15
>COG0465 HflB ATP-dependent Zn proteases [Posttranslational modification, protein turnover, chaperones]
Probab=99.97 E-value=3.7e-30 Score=268.39 Aligned_cols=190 Identities=25% Similarity=0.368 Sum_probs=164.8
Q ss_pred CCCCccccccChhhHHHHHHHHHHHHhCHHHHHHhCCCCCceeEEeCCCCCcHHHHHHHHHHHcCCCeEEecccCc----
Q 035603 188 HPATFDTLAMASKKKEAIKKDLIKFTEGKEYYAKIGKAWKRGYLLFGPPGTGKSTMIAAMANCLNYDVYDLELTSV---- 263 (431)
Q Consensus 188 ~p~~f~~l~g~~~~k~~i~~~l~~~~~~~~~~~~~g~~~~rg~LL~GPPGtGKTsla~aiA~~l~~~i~~l~~~~~---- 263 (431)
...+|.|++|.++.|+++.+ +..|+++|..|..+|...|+|+||+||||||||+||+|+|++.+.||+.++.++.
T Consensus 145 ~~v~F~DVAG~dEakeel~E-iVdfLk~p~ky~~lGakiPkGvlLvGpPGTGKTLLAkAvAgEA~VPFf~iSGS~FVemf 223 (596)
T COG0465 145 VKVTFADVAGVDEAKEELSE-LVDFLKNPKKYQALGAKIPKGVLLVGPPGTGKTLLAKAVAGEAGVPFFSISGSDFVEMF 223 (596)
T ss_pred cCcChhhhcCcHHHHHHHHH-HHHHHhCchhhHhcccccccceeEecCCCCCcHHHHHHHhcccCCCceeccchhhhhhh
Confidence 44889999999999999976 7799999999999999999999999999999999999999999999999999875
Q ss_pred --CChHHHHHHHHHhhhc------------------------ccchhhHHHHHHHHhcCcccCCCCceEEEEecCCCCCC
Q 035603 264 --ENNNELRSLLVDISSK------------------------KKKSNVTLSGLLNCIGGLWSTCGGERIIVFTTNHVDKL 317 (431)
Q Consensus 264 --~~~~~l~~l~~~~~~~------------------------~~~~~~~~s~lL~~ldg~~~~~~~~~ivI~TTN~~~~L 317 (431)
.+.+.+|.+|.++.+. +.....++++||.+|||+..+ ++++||++||+|+-|
T Consensus 224 VGvGAsRVRdLF~qAkk~aP~IIFIDEiDAvGr~Rg~g~GggnderEQTLNQlLvEmDGF~~~--~gviviaaTNRpdVl 301 (596)
T COG0465 224 VGVGASRVRDLFEQAKKNAPCIIFIDEIDAVGRQRGAGLGGGNDEREQTLNQLLVEMDGFGGN--EGVIVIAATNRPDVL 301 (596)
T ss_pred cCCCcHHHHHHHHHhhccCCCeEEEehhhhcccccCCCCCCCchHHHHHHHHHHhhhccCCCC--CceEEEecCCCcccc
Confidence 3678999999998864 112346999999999999754 459999999999999
Q ss_pred ChhhhccCceeEEEEcCCCCHHHHHHHHHHhhchhcchhHHHHHhHhccC-CCCHHHHHHHhcc
Q 035603 318 DPALIRRGRMDKHIEMPYCCFEAFKVLAKNYLEIESHELFHEIGSLLGET-DITPADVAENLMP 380 (431)
Q Consensus 318 d~AllRpGRfd~~I~~~~p~~~~r~~i~~~~l~~~~~~~~~~i~~l~~~~-~~s~adI~~~l~~ 380 (431)
||||+||||||++|.++.|+...|++|++.+..........++..+++.+ |+++||+++++..
T Consensus 302 D~ALlRpgRFDRqI~V~~PDi~gRe~IlkvH~~~~~l~~~Vdl~~iAr~tpGfsGAdL~nl~NE 365 (596)
T COG0465 302 DPALLRPGRFDRQILVELPDIKGREQILKVHAKNKPLAEDVDLKKIARGTPGFSGADLANLLNE 365 (596)
T ss_pred hHhhcCCCCcceeeecCCcchhhHHHHHHHHhhcCCCCCcCCHHHHhhhCCCcccchHhhhHHH
Confidence 99999999999999999999999999999887654433334455566644 9999999988853
No 16
>KOG0729 consensus 26S proteasome regulatory complex, ATPase RPT1 [Posttranslational modification, protein turnover, chaperones]
Probab=99.97 E-value=5.2e-30 Score=239.27 Aligned_cols=190 Identities=24% Similarity=0.317 Sum_probs=163.8
Q ss_pred cCCCCccccccChhhHHHHHHHHHHHHhCHHHHHHhCCCCCceeEEeCCCCCcHHHHHHHHHHHcCCCeEEecccCc---
Q 035603 187 EHPATFDTLAMASKKKEAIKKDLIKFTEGKEYYAKIGKAWKRGYLLFGPPGTGKSTMIAAMANCLNYDVYDLELTSV--- 263 (431)
Q Consensus 187 ~~p~~f~~l~g~~~~k~~i~~~l~~~~~~~~~~~~~g~~~~rg~LL~GPPGtGKTsla~aiA~~l~~~i~~l~~~~~--- 263 (431)
.+-.++.+|+|-.++.+.|.+-+..++.+|+.|-++|+.+|+|+|||||||||||..|+|+|+..+.-|+.+-.+++
T Consensus 171 kpdvty~dvggckeqieklrevve~pll~perfv~lgidppkgvllygppgtgktl~aravanrtdacfirvigselvqk 250 (435)
T KOG0729|consen 171 KPDVTYSDVGGCKEQIEKLREVVELPLLHPERFVNLGIDPPKGVLLYGPPGTGKTLCARAVANRTDACFIRVIGSELVQK 250 (435)
T ss_pred CCCcccccccchHHHHHHHHHHHhccccCHHHHhhcCCCCCCceEEeCCCCCchhHHHHHHhcccCceEEeehhHHHHHH
Confidence 34489999999999999999999999999999999999999999999999999999999999999999999877765
Q ss_pred ---CChHHHHHHHHHhhhc------------------------ccchhhHHHHHHHHhcCcccCCCCceEEEEecCCCCC
Q 035603 264 ---ENNNELRSLLVDISSK------------------------KKKSNVTLSGLLNCIGGLWSTCGGERIIVFTTNHVDK 316 (431)
Q Consensus 264 ---~~~~~l~~l~~~~~~~------------------------~~~~~~~~s~lL~~ldg~~~~~~~~~ivI~TTN~~~~ 316 (431)
++..-++++|.-+..+ ++..++++-.|++.+||+.. .+++-|+|+||+|+.
T Consensus 251 yvgegarmvrelf~martkkaciiffdeidaiggarfddg~ggdnevqrtmleli~qldgfdp--rgnikvlmatnrpdt 328 (435)
T KOG0729|consen 251 YVGEGARMVRELFEMARTKKACIIFFDEIDAIGGARFDDGAGGDNEVQRTMLELINQLDGFDP--RGNIKVLMATNRPDT 328 (435)
T ss_pred HhhhhHHHHHHHHHHhcccceEEEEeeccccccCccccCCCCCcHHHHHHHHHHHHhccCCCC--CCCeEEEeecCCCCC
Confidence 2344578888777655 23446789999999999954 566999999999999
Q ss_pred CChhhhccCceeEEEEcCCCCHHHHHHHHHHhhchhc---chhHHHHHhHhccCCCCHHHHHHHhcc
Q 035603 317 LDPALIRRGRMDKHIEMPYCCFEAFKVLAKNYLEIES---HELFHEIGSLLGETDITPADVAENLMP 380 (431)
Q Consensus 317 Ld~AllRpGRfd~~I~~~~p~~~~r~~i~~~~l~~~~---~~~~~~i~~l~~~~~~s~adI~~~l~~ 380 (431)
|||||+||||+|++++|++|+.+.|..|++.+-.... ...++-++.||. +-|+|+|..+|..
T Consensus 329 ldpallrpgrldrkvef~lpdlegrt~i~kihaksmsverdir~ellarlcp--nstgaeirsvcte 393 (435)
T KOG0729|consen 329 LDPALLRPGRLDRKVEFGLPDLEGRTHIFKIHAKSMSVERDIRFELLARLCP--NSTGAEIRSVCTE 393 (435)
T ss_pred cCHhhcCCcccccceeccCCcccccceeEEEeccccccccchhHHHHHhhCC--CCcchHHHHHHHH
Confidence 9999999999999999999999999999988765432 234666788887 6789999877764
No 17
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=99.96 E-value=2.8e-29 Score=256.00 Aligned_cols=217 Identities=22% Similarity=0.303 Sum_probs=172.5
Q ss_pred cCCCCccccccChhhHHHHHHHHHHHHhCHHHHHHhCCCCCceeEEeCCCCCcHHHHHHHHHHHcCCCeEEecccCcC--
Q 035603 187 EHPATFDTLAMASKKKEAIKKDLIKFTEGKEYYAKIGKAWKRGYLLFGPPGTGKSTMIAAMANCLNYDVYDLELTSVE-- 264 (431)
Q Consensus 187 ~~p~~f~~l~g~~~~k~~i~~~l~~~~~~~~~~~~~g~~~~rg~LL~GPPGtGKTsla~aiA~~l~~~i~~l~~~~~~-- 264 (431)
.+..+|++|+|.++++++|.+.+..++.+++.|..+|+.+++|+|||||||||||++|+++|++++.+++.++++.+.
T Consensus 125 ~p~~~~~di~Gl~~~~~~l~~~i~~pl~~~~~~~~~g~~~p~gvLL~GppGtGKT~lAkaia~~~~~~~i~v~~~~l~~~ 204 (389)
T PRK03992 125 SPNVTYEDIGGLEEQIREVREAVELPLKKPELFEEVGIEPPKGVLLYGPPGTGKTLLAKAVAHETNATFIRVVGSELVQK 204 (389)
T ss_pred CCCCCHHHhCCcHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCceEEECCCCCChHHHHHHHHHHhCCCEEEeehHHHhHh
Confidence 344889999999999999999999999999999999999999999999999999999999999999999999887652
Q ss_pred ----ChHHHHHHHHHhhhc------------------------ccchhhHHHHHHHHhcCcccCCCCceEEEEecCCCCC
Q 035603 265 ----NNNELRSLLVDISSK------------------------KKKSNVTLSGLLNCIGGLWSTCGGERIIVFTTNHVDK 316 (431)
Q Consensus 265 ----~~~~l~~l~~~~~~~------------------------~~~~~~~~s~lL~~ldg~~~~~~~~~ivI~TTN~~~~ 316 (431)
+...++.+|..+... ......++..+|+.+|++... +++.||+|||+++.
T Consensus 205 ~~g~~~~~i~~~f~~a~~~~p~IlfiDEiD~l~~~r~~~~~~~~~~~~~~l~~lL~~ld~~~~~--~~v~VI~aTn~~~~ 282 (389)
T PRK03992 205 FIGEGARLVRELFELAREKAPSIIFIDEIDAIAAKRTDSGTSGDREVQRTLMQLLAEMDGFDPR--GNVKIIAATNRIDI 282 (389)
T ss_pred hccchHHHHHHHHHHHHhcCCeEEEEechhhhhcccccCCCCccHHHHHHHHHHHHhccccCCC--CCEEEEEecCChhh
Confidence 334566677655432 011234678899999998543 45999999999999
Q ss_pred CChhhhccCceeEEEEcCCCCHHHHHHHHHHhhchhcchhHHHHHhHhc-cCCCCHHHHHHHhcccC----CCCCHHHHH
Q 035603 317 LDPALIRRGRMDKHIEMPYCCFEAFKVLAKNYLEIESHELFHEIGSLLG-ETDITPADVAENLMPKS----DEDDAGTCL 391 (431)
Q Consensus 317 Ld~AllRpGRfd~~I~~~~p~~~~r~~i~~~~l~~~~~~~~~~i~~l~~-~~~~s~adI~~~l~~~~----~~~~~~~~l 391 (431)
||+|++||||||..|+||+|+.++|.+|++.++.........++..++. +.|++++||..+|..+. .........
T Consensus 283 ld~allRpgRfd~~I~v~~P~~~~R~~Il~~~~~~~~~~~~~~~~~la~~t~g~sgadl~~l~~eA~~~a~~~~~~~i~~ 362 (389)
T PRK03992 283 LDPAILRPGRFDRIIEVPLPDEEGRLEILKIHTRKMNLADDVDLEELAELTEGASGADLKAICTEAGMFAIRDDRTEVTM 362 (389)
T ss_pred CCHHHcCCccCceEEEECCCCHHHHHHHHHHHhccCCCCCcCCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHcCCCCcCH
Confidence 9999999999999999999999999999999986443222223555555 34999999998876421 122234667
Q ss_pred HHHHHHHHHHHHHH
Q 035603 392 KNLIEALKAAKEKA 405 (431)
Q Consensus 392 ~~l~~~l~~~~~~~ 405 (431)
+++.+|+++.+...
T Consensus 363 ~d~~~A~~~~~~~~ 376 (389)
T PRK03992 363 EDFLKAIEKVMGKE 376 (389)
T ss_pred HHHHHHHHHHhccc
Confidence 88888888775443
No 18
>KOG0735 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.96 E-value=3.2e-29 Score=258.89 Aligned_cols=196 Identities=20% Similarity=0.262 Sum_probs=169.8
Q ss_pred eeeccCC--CCccccccChhhHHHHHHHHHHHHhCHHHHHHhCCCCCceeEEeCCCCCcHHHHHHHHHHHcCCCeEEecc
Q 035603 183 HVYFEHP--ATFDTLAMASKKKEAIKKDLIKFTEGKEYYAKIGKAWKRGYLLFGPPGTGKSTMIAAMANCLNYDVYDLEL 260 (431)
Q Consensus 183 ~~~~~~p--~~f~~l~g~~~~k~~i~~~l~~~~~~~~~~~~~g~~~~rg~LL~GPPGtGKTsla~aiA~~l~~~i~~l~~ 260 (431)
.+.+..+ ..|++|+|..++|+.|.+-+.++.+.+..|...+++.+.|+|||||||||||.||.|+|..+++.|+.+..
T Consensus 655 ~ik~~k~tgi~w~digg~~~~k~~l~~~i~~P~kyp~if~~~plr~~~giLLyGppGcGKT~la~a~a~~~~~~fisvKG 734 (952)
T KOG0735|consen 655 GIKLVKSTGIRWEDIGGLFEAKKVLEEVIEWPSKYPQIFANCPLRLRTGILLYGPPGCGKTLLASAIASNSNLRFISVKG 734 (952)
T ss_pred hccccccCCCCceecccHHHHHHHHHHHHhccccchHHHhhCCcccccceEEECCCCCcHHHHHHHHHhhCCeeEEEecC
Confidence 3444444 57999999999999999999999999999999999999999999999999999999999999999999988
Q ss_pred cCc------CChHHHHHHHHHhhhc---------------------ccchhhHHHHHHHHhcCcccCCCCceEEEEecCC
Q 035603 261 TSV------ENNNELRSLLVDISSK---------------------KKKSNVTLSGLLNCIGGLWSTCGGERIIVFTTNH 313 (431)
Q Consensus 261 ~~~------~~~~~l~~l~~~~~~~---------------------~~~~~~~~s~lL~~ldg~~~~~~~~~ivI~TTN~ 313 (431)
.++ .++..++.+|..+... .+...+.+++||.+|||...-.| +.|+++|.+
T Consensus 735 PElL~KyIGaSEq~vR~lF~rA~~a~PCiLFFDEfdSiAPkRGhDsTGVTDRVVNQlLTelDG~Egl~G--V~i~aaTsR 812 (952)
T KOG0735|consen 735 PELLSKYIGASEQNVRDLFERAQSAKPCILFFDEFDSIAPKRGHDSTGVTDRVVNQLLTELDGAEGLDG--VYILAATSR 812 (952)
T ss_pred HHHHHHHhcccHHHHHHHHHHhhccCCeEEEeccccccCcccCCCCCCchHHHHHHHHHhhccccccce--EEEEEecCC
Confidence 775 3567899999887654 34567899999999999976544 999999999
Q ss_pred CCCCChhhhccCceeEEEEcCCCCHHHHHHHHHHhhchhcchhHHHHHhHhcc-CCCCHHHHHHHhcc
Q 035603 314 VDKLDPALIRRGRMDKHIEMPYCCFEAFKVLAKNYLEIESHELFHEIGSLLGE-TDITPADVAENLMP 380 (431)
Q Consensus 314 ~~~Ld~AllRpGRfd~~I~~~~p~~~~r~~i~~~~l~~~~~~~~~~i~~l~~~-~~~s~adI~~~l~~ 380 (431)
||.|||||+||||+|+.|+-|.|+..+|.+|++..-.....+...+++.++.. .|||+||++.+|-.
T Consensus 813 pdliDpALLRpGRlD~~v~C~~P~~~eRl~il~~ls~s~~~~~~vdl~~~a~~T~g~tgADlq~ll~~ 880 (952)
T KOG0735|consen 813 PDLIDPALLRPGRLDKLVYCPLPDEPERLEILQVLSNSLLKDTDVDLECLAQKTDGFTGADLQSLLYN 880 (952)
T ss_pred ccccCHhhcCCCccceeeeCCCCCcHHHHHHHHHHhhccCCccccchHHHhhhcCCCchhhHHHHHHH
Confidence 99999999999999999999999999999999876554333445567777774 49999999988763
No 19
>PTZ00361 26 proteosome regulatory subunit 4-like protein; Provisional
Probab=99.96 E-value=3.9e-29 Score=256.22 Aligned_cols=215 Identities=22% Similarity=0.292 Sum_probs=168.8
Q ss_pred ccCCCCccccccChhhHHHHHHHHHHHHhCHHHHHHhCCCCCceeEEeCCCCCcHHHHHHHHHHHcCCCeEEecccCcC-
Q 035603 186 FEHPATFDTLAMASKKKEAIKKDLIKFTEGKEYYAKIGKAWKRGYLLFGPPGTGKSTMIAAMANCLNYDVYDLELTSVE- 264 (431)
Q Consensus 186 ~~~p~~f~~l~g~~~~k~~i~~~l~~~~~~~~~~~~~g~~~~rg~LL~GPPGtGKTsla~aiA~~l~~~i~~l~~~~~~- 264 (431)
..++.+|++|+|.++++++|.+.+..++.+++.|..+|+.+++|+|||||||||||++|+++|++++.+++.+..+.+.
T Consensus 176 ~~p~~~~~DIgGl~~qi~~l~e~v~lpl~~p~~~~~~gi~~p~gVLL~GPPGTGKT~LAraIA~el~~~fi~V~~seL~~ 255 (438)
T PTZ00361 176 KAPLESYADIGGLEQQIQEIKEAVELPLTHPELYDDIGIKPPKGVILYGPPGTGKTLLAKAVANETSATFLRVVGSELIQ 255 (438)
T ss_pred cCCCCCHHHhcCHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCcEEEEECCCCCCHHHHHHHHHHhhCCCEEEEecchhhh
Confidence 3455899999999999999999999999999999999999999999999999999999999999999999998877652
Q ss_pred -----ChHHHHHHHHHhhhc------------------------ccchhhHHHHHHHHhcCcccCCCCceEEEEecCCCC
Q 035603 265 -----NNNELRSLLVDISSK------------------------KKKSNVTLSGLLNCIGGLWSTCGGERIIVFTTNHVD 315 (431)
Q Consensus 265 -----~~~~l~~l~~~~~~~------------------------~~~~~~~~s~lL~~ldg~~~~~~~~~ivI~TTN~~~ 315 (431)
+...++.+|..+... ......++..||+.+||+... .++.||+|||+++
T Consensus 256 k~~Ge~~~~vr~lF~~A~~~~P~ILfIDEID~l~~kR~~~~sgg~~e~qr~ll~LL~~Ldg~~~~--~~V~VI~ATNr~d 333 (438)
T PTZ00361 256 KYLGDGPKLVRELFRVAEENAPSIVFIDEIDAIGTKRYDATSGGEKEIQRTMLELLNQLDGFDSR--GDVKVIMATNRIE 333 (438)
T ss_pred hhcchHHHHHHHHHHHHHhCCCcEEeHHHHHHHhccCCCCCCcccHHHHHHHHHHHHHHhhhccc--CCeEEEEecCChH
Confidence 233466666544322 011235678899999998543 4599999999999
Q ss_pred CCChhhhccCceeEEEEcCCCCHHHHHHHHHHhhchhcchhHHHHHhHhc-cCCCCHHHHHHHhcccC----CCCCHHHH
Q 035603 316 KLDPALIRRGRMDKHIEMPYCCFEAFKVLAKNYLEIESHELFHEIGSLLG-ETDITPADVAENLMPKS----DEDDAGTC 390 (431)
Q Consensus 316 ~Ld~AllRpGRfd~~I~~~~p~~~~r~~i~~~~l~~~~~~~~~~i~~l~~-~~~~s~adI~~~l~~~~----~~~~~~~~ 390 (431)
.||||++||||||.+|+|++|+.++|.+|++.++.........++..++. ..|+|+|||..+|..+. ..+....+
T Consensus 334 ~LDpaLlRpGRfd~~I~~~~Pd~~~R~~Il~~~~~k~~l~~dvdl~~la~~t~g~sgAdI~~i~~eA~~~Alr~~r~~Vt 413 (438)
T PTZ00361 334 SLDPALIRPGRIDRKIEFPNPDEKTKRRIFEIHTSKMTLAEDVDLEEFIMAKDELSGADIKAICTEAGLLALRERRMKVT 413 (438)
T ss_pred HhhHHhccCCeeEEEEEeCCCCHHHHHHHHHHHHhcCCCCcCcCHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhcCCccC
Confidence 99999999999999999999999999999999986543322234555555 44999999998875421 11123355
Q ss_pred HHHHHHHHHHHH
Q 035603 391 LKNLIEALKAAK 402 (431)
Q Consensus 391 l~~l~~~l~~~~ 402 (431)
.+++..|+++..
T Consensus 414 ~~D~~~A~~~v~ 425 (438)
T PTZ00361 414 QADFRKAKEKVL 425 (438)
T ss_pred HHHHHHHHHHHH
Confidence 667767666653
No 20
>CHL00195 ycf46 Ycf46; Provisional
Probab=99.96 E-value=6.9e-29 Score=257.82 Aligned_cols=212 Identities=20% Similarity=0.244 Sum_probs=163.0
Q ss_pred eccC-CCCccccccChhhHHHHHHHHHHHHhCHHHHHHhCCCCCceeEEeCCCCCcHHHHHHHHHHHcCCCeEEecccCc
Q 035603 185 YFEH-PATFDTLAMASKKKEAIKKDLIKFTEGKEYYAKIGKAWKRGYLLFGPPGTGKSTMIAAMANCLNYDVYDLELTSV 263 (431)
Q Consensus 185 ~~~~-p~~f~~l~g~~~~k~~i~~~l~~~~~~~~~~~~~g~~~~rg~LL~GPPGtGKTsla~aiA~~l~~~i~~l~~~~~ 263 (431)
.|.+ ..+|++|+|.+.+|+.+.+....|. ......|++.++|+|||||||||||++|+++|++++.+++.++++.+
T Consensus 219 e~~~~~~~~~dvgGl~~lK~~l~~~~~~~~---~~~~~~gl~~pkGILL~GPpGTGKTllAkaiA~e~~~~~~~l~~~~l 295 (489)
T CHL00195 219 EFYSVNEKISDIGGLDNLKDWLKKRSTSFS---KQASNYGLPTPRGLLLVGIQGTGKSLTAKAIANDWQLPLLRLDVGKL 295 (489)
T ss_pred cccCCCCCHHHhcCHHHHHHHHHHHHHHhh---HHHHhcCCCCCceEEEECCCCCcHHHHHHHHHHHhCCCEEEEEhHHh
Confidence 3434 4789999999999999987665553 34567899999999999999999999999999999999999988654
Q ss_pred ------CChHHHHHHHHHhhhc----------------------ccchhhHHHHHHHHhcCcccCCCCceEEEEecCCCC
Q 035603 264 ------ENNNELRSLLVDISSK----------------------KKKSNVTLSGLLNCIGGLWSTCGGERIIVFTTNHVD 315 (431)
Q Consensus 264 ------~~~~~l~~l~~~~~~~----------------------~~~~~~~~s~lL~~ldg~~~~~~~~~ivI~TTN~~~ 315 (431)
.+...++++|..+... .+.....++.||+.|+.. ..+++||+|||+++
T Consensus 296 ~~~~vGese~~l~~~f~~A~~~~P~IL~IDEID~~~~~~~~~~d~~~~~rvl~~lL~~l~~~----~~~V~vIaTTN~~~ 371 (489)
T CHL00195 296 FGGIVGESESRMRQMIRIAEALSPCILWIDEIDKAFSNSESKGDSGTTNRVLATFITWLSEK----KSPVFVVATANNID 371 (489)
T ss_pred cccccChHHHHHHHHHHHHHhcCCcEEEehhhhhhhccccCCCCchHHHHHHHHHHHHHhcC----CCceEEEEecCChh
Confidence 2456688887655432 112345677888888753 34599999999999
Q ss_pred CCChhhhccCceeEEEEcCCCCHHHHHHHHHHhhchhcch--hHHHHHhHhcc-CCCCHHHHHHHhcccC---CCCCHHH
Q 035603 316 KLDPALIRRGRMDKHIEMPYCCFEAFKVLAKNYLEIESHE--LFHEIGSLLGE-TDITPADVAENLMPKS---DEDDAGT 389 (431)
Q Consensus 316 ~Ld~AllRpGRfd~~I~~~~p~~~~r~~i~~~~l~~~~~~--~~~~i~~l~~~-~~~s~adI~~~l~~~~---~~~~~~~ 389 (431)
.||||++||||||..|+++.|+.++|.+|++.++...... ...++..++.. .|||+|||..++..+. ..++...
T Consensus 372 ~Ld~allR~GRFD~~i~v~lP~~~eR~~Il~~~l~~~~~~~~~~~dl~~La~~T~GfSGAdI~~lv~eA~~~A~~~~~~l 451 (489)
T CHL00195 372 LLPLEILRKGRFDEIFFLDLPSLEEREKIFKIHLQKFRPKSWKKYDIKKLSKLSNKFSGAEIEQSIIEAMYIAFYEKREF 451 (489)
T ss_pred hCCHHHhCCCcCCeEEEeCCcCHHHHHHHHHHHHhhcCCCcccccCHHHHHhhcCCCCHHHHHHHHHHHHHHHHHcCCCc
Confidence 9999999999999999999999999999999999754321 13346677764 4999999998776421 1122335
Q ss_pred HHHHHHHHHHHHHH
Q 035603 390 CLKNLIEALKAAKE 403 (431)
Q Consensus 390 ~l~~l~~~l~~~~~ 403 (431)
..++++.++++...
T Consensus 452 t~~dl~~a~~~~~P 465 (489)
T CHL00195 452 TTDDILLALKQFIP 465 (489)
T ss_pred CHHHHHHHHHhcCC
Confidence 66778777776654
No 21
>TIGR01241 FtsH_fam ATP-dependent metalloprotease FtsH. HflB(FtsH) is a pleiotropic protein required for correct cell division in bacteria. It has ATP-dependent zinc metalloprotease activity. It was formerly designated cell division protein FtsH.
Probab=99.96 E-value=8.9e-29 Score=260.07 Aligned_cols=213 Identities=22% Similarity=0.351 Sum_probs=170.8
Q ss_pred cCCCCccccccChhhHHHHHHHHHHHHhCHHHHHHhCCCCCceeEEeCCCCCcHHHHHHHHHHHcCCCeEEecccCc---
Q 035603 187 EHPATFDTLAMASKKKEAIKKDLIKFTEGKEYYAKIGKAWKRGYLLFGPPGTGKSTMIAAMANCLNYDVYDLELTSV--- 263 (431)
Q Consensus 187 ~~p~~f~~l~g~~~~k~~i~~~l~~~~~~~~~~~~~g~~~~rg~LL~GPPGtGKTsla~aiA~~l~~~i~~l~~~~~--- 263 (431)
.+..+|++|+|.+++|+++.+ +..++.+++.|...|.+.++|+|||||||||||++++++|++++.+++.++.+++
T Consensus 49 ~~~~~~~di~g~~~~k~~l~~-~~~~l~~~~~~~~~g~~~~~giLL~GppGtGKT~la~alA~~~~~~~~~i~~~~~~~~ 127 (495)
T TIGR01241 49 KPKVTFKDVAGIDEAKEELME-IVDFLKNPSKFTKLGAKIPKGVLLVGPPGTGKTLLAKAVAGEAGVPFFSISGSDFVEM 127 (495)
T ss_pred CCCCCHHHhCCHHHHHHHHHH-HHHHHHCHHHHHhcCCCCCCcEEEECCCCCCHHHHHHHHHHHcCCCeeeccHHHHHHH
Confidence 345899999999999999986 5557899999999999999999999999999999999999999999999987754
Q ss_pred ---CChHHHHHHHHHhhhc------------------------ccchhhHHHHHHHHhcCcccCCCCceEEEEecCCCCC
Q 035603 264 ---ENNNELRSLLVDISSK------------------------KKKSNVTLSGLLNCIGGLWSTCGGERIIVFTTNHVDK 316 (431)
Q Consensus 264 ---~~~~~l~~l~~~~~~~------------------------~~~~~~~~s~lL~~ldg~~~~~~~~~ivI~TTN~~~~ 316 (431)
.+...++.+|..+... ......++++||+.||++... ++++||+|||+++.
T Consensus 128 ~~g~~~~~l~~~f~~a~~~~p~Il~iDEid~l~~~r~~~~~~~~~~~~~~~~~lL~~~d~~~~~--~~v~vI~aTn~~~~ 205 (495)
T TIGR01241 128 FVGVGASRVRDLFEQAKKNAPCIIFIDEIDAVGRQRGAGLGGGNDEREQTLNQLLVEMDGFGTN--TGVIVIAATNRPDV 205 (495)
T ss_pred HhcccHHHHHHHHHHHHhcCCCEEEEechhhhhhccccCcCCccHHHHHHHHHHHhhhccccCC--CCeEEEEecCChhh
Confidence 2445788888776543 011246788999999999654 44999999999999
Q ss_pred CChhhhccCceeEEEEcCCCCHHHHHHHHHHhhchhcchhHHHHHhHhcc-CCCCHHHHHHHhcccC----CCCCHHHHH
Q 035603 317 LDPALIRRGRMDKHIEMPYCCFEAFKVLAKNYLEIESHELFHEIGSLLGE-TDITPADVAENLMPKS----DEDDAGTCL 391 (431)
Q Consensus 317 Ld~AllRpGRfd~~I~~~~p~~~~r~~i~~~~l~~~~~~~~~~i~~l~~~-~~~s~adI~~~l~~~~----~~~~~~~~l 391 (431)
||||++||||||.+|+++.|+.++|.+|++.++.........++..++.. .|+|++||..++..+. .........
T Consensus 206 ld~al~r~gRfd~~i~i~~Pd~~~R~~il~~~l~~~~~~~~~~l~~la~~t~G~sgadl~~l~~eA~~~a~~~~~~~i~~ 285 (495)
T TIGR01241 206 LDPALLRPGRFDRQVVVDLPDIKGREEILKVHAKNKKLAPDVDLKAVARRTPGFSGADLANLLNEAALLAARKNKTEITM 285 (495)
T ss_pred cCHHHhcCCcceEEEEcCCCCHHHHHHHHHHHHhcCCCCcchhHHHHHHhCCCCCHHHHHHHHHHHHHHHHHcCCCCCCH
Confidence 99999999999999999999999999999999865433333345666664 4999999998776421 122234566
Q ss_pred HHHHHHHHHHH
Q 035603 392 KNLIEALKAAK 402 (431)
Q Consensus 392 ~~l~~~l~~~~ 402 (431)
+++..++++..
T Consensus 286 ~~l~~a~~~~~ 296 (495)
T TIGR01241 286 NDIEEAIDRVI 296 (495)
T ss_pred HHHHHHHHHHh
Confidence 77777777654
No 22
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=99.96 E-value=1.2e-28 Score=270.34 Aligned_cols=189 Identities=23% Similarity=0.302 Sum_probs=161.5
Q ss_pred CCCccccccChhhHHHHHHHHHHHHhCHHHHHHhCCCCCceeEEeCCCCCcHHHHHHHHHHHcCCCeEEecccCc-----
Q 035603 189 PATFDTLAMASKKKEAIKKDLIKFTEGKEYYAKIGKAWKRGYLLFGPPGTGKSTMIAAMANCLNYDVYDLELTSV----- 263 (431)
Q Consensus 189 p~~f~~l~g~~~~k~~i~~~l~~~~~~~~~~~~~g~~~~rg~LL~GPPGtGKTsla~aiA~~l~~~i~~l~~~~~----- 263 (431)
..+|++|+|.+++|+.|.+.+..++..++.|.++|+.+++|+|||||||||||++|+++|++++.+++.++.+++
T Consensus 449 ~~~~~di~g~~~~k~~l~~~v~~~~~~~~~~~~~g~~~~~giLL~GppGtGKT~lakalA~e~~~~fi~v~~~~l~~~~v 528 (733)
T TIGR01243 449 NVRWSDIGGLEEVKQELREAVEWPLKHPEIFEKMGIRPPKGVLLFGPPGTGKTLLAKAVATESGANFIAVRGPEILSKWV 528 (733)
T ss_pred ccchhhcccHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhcCCCEEEEehHHHhhccc
Confidence 478999999999999999999999999999999999999999999999999999999999999999999987764
Q ss_pred -CChHHHHHHHHHhhhc----------------------ccchhhHHHHHHHHhcCcccCCCCceEEEEecCCCCCCChh
Q 035603 264 -ENNNELRSLLVDISSK----------------------KKKSNVTLSGLLNCIGGLWSTCGGERIIVFTTNHVDKLDPA 320 (431)
Q Consensus 264 -~~~~~l~~l~~~~~~~----------------------~~~~~~~~s~lL~~ldg~~~~~~~~~ivI~TTN~~~~Ld~A 320 (431)
++...++.+|..+... .......+++||..|||+... .+++||+|||+|+.||||
T Consensus 529 Gese~~i~~~f~~A~~~~p~iifiDEid~l~~~r~~~~~~~~~~~~~~~lL~~ldg~~~~--~~v~vI~aTn~~~~ld~a 606 (733)
T TIGR01243 529 GESEKAIREIFRKARQAAPAIIFFDEIDAIAPARGARFDTSVTDRIVNQLLTEMDGIQEL--SNVVVIAATNRPDILDPA 606 (733)
T ss_pred CcHHHHHHHHHHHHHhcCCEEEEEEChhhhhccCCCCCCccHHHHHHHHHHHHhhcccCC--CCEEEEEeCCChhhCCHh
Confidence 2456788888776543 112346789999999998653 459999999999999999
Q ss_pred hhccCceeEEEEcCCCCHHHHHHHHHHhhchhcchhHHHHHhHhcc-CCCCHHHHHHHhc
Q 035603 321 LIRRGRMDKHIEMPYCCFEAFKVLAKNYLEIESHELFHEIGSLLGE-TDITPADVAENLM 379 (431)
Q Consensus 321 llRpGRfd~~I~~~~p~~~~r~~i~~~~l~~~~~~~~~~i~~l~~~-~~~s~adI~~~l~ 379 (431)
++||||||.+|++|+|+.++|.+|++.++.........++..++.. .|||+|||..+|.
T Consensus 607 llRpgRfd~~i~v~~Pd~~~R~~i~~~~~~~~~~~~~~~l~~la~~t~g~sgadi~~~~~ 666 (733)
T TIGR01243 607 LLRPGRFDRLILVPPPDEEARKEIFKIHTRSMPLAEDVDLEELAEMTEGYTGADIEAVCR 666 (733)
T ss_pred hcCCCccceEEEeCCcCHHHHHHHHHHHhcCCCCCccCCHHHHHHHcCCCCHHHHHHHHH
Confidence 9999999999999999999999999988765443333345666663 4999999997765
No 23
>TIGR03689 pup_AAA proteasome ATPase. In the Actinobacteria, as shown for Mycobacterium tuberculosis, some proteins are modified by ligation between an epsilon-amino group of a lysine side chain and the C-terminal carboxylate of the ubiquitin-like protein Pup. This modification leads to protein degradation by the archaeal-like proteasome found in the Actinobacteria. Members of this protein family belong to the AAA family of ATPases and tend to be clustered with the genes for Pup, the Pup ligase PafA, and structural components of the proteasome. This protein forms hexameric rings with ATPase activity.
Probab=99.96 E-value=1.3e-28 Score=255.79 Aligned_cols=186 Identities=23% Similarity=0.307 Sum_probs=147.8
Q ss_pred CCCCccccccChhhHHHHHHHHHHHHhCHHHHHHhCCCCCceeEEeCCCCCcHHHHHHHHHHHcCCC----------eEE
Q 035603 188 HPATFDTLAMASKKKEAIKKDLIKFTEGKEYYAKIGKAWKRGYLLFGPPGTGKSTMIAAMANCLNYD----------VYD 257 (431)
Q Consensus 188 ~p~~f~~l~g~~~~k~~i~~~l~~~~~~~~~~~~~g~~~~rg~LL~GPPGtGKTsla~aiA~~l~~~----------i~~ 257 (431)
++.+|++|+|.++++++|.+.+..++.++++|...|+++++|+|||||||||||++|+++|++++.+ ++.
T Consensus 177 p~v~~~dIgGl~~~i~~i~~~v~lp~~~~~l~~~~gl~~p~GILLyGPPGTGKT~LAKAlA~eL~~~i~~~~~~~~~fl~ 256 (512)
T TIGR03689 177 PDVTYADIGGLDSQIEQIRDAVELPFLHPELYREYDLKPPKGVLLYGPPGCGKTLIAKAVANSLAQRIGAETGDKSYFLN 256 (512)
T ss_pred CCCCHHHcCChHHHHHHHHHHHHHHhhCHHHHHhccCCCCcceEEECCCCCcHHHHHHHHHHhhccccccccCCceeEEe
Confidence 4589999999999999999999999999999999999999999999999999999999999998765 333
Q ss_pred ecccCc------CChHHHHHHHHHhhhc--------------------------ccchhhHHHHHHHHhcCcccCCCCce
Q 035603 258 LELTSV------ENNNELRSLLVDISSK--------------------------KKKSNVTLSGLLNCIGGLWSTCGGER 305 (431)
Q Consensus 258 l~~~~~------~~~~~l~~l~~~~~~~--------------------------~~~~~~~~s~lL~~ldg~~~~~~~~~ 305 (431)
+..+.+ .+...++.+|..+... .......+++||+.|||+... +++
T Consensus 257 v~~~eLl~kyvGete~~ir~iF~~Ar~~a~~g~p~IIfIDEiD~L~~~R~~~~s~d~e~~il~~LL~~LDgl~~~--~~V 334 (512)
T TIGR03689 257 IKGPELLNKYVGETERQIRLIFQRAREKASDGRPVIVFFDEMDSIFRTRGSGVSSDVETTVVPQLLSELDGVESL--DNV 334 (512)
T ss_pred ccchhhcccccchHHHHHHHHHHHHHHHhhcCCCceEEEehhhhhhcccCCCccchHHHHHHHHHHHHhcccccC--Cce
Confidence 333332 1234566666554431 011235678999999999754 459
Q ss_pred EEEEecCCCCCCChhhhccCceeEEEEcCCCCHHHHHHHHHHhhchhcchhHHHHHhHhccCCCCHHHHHHHhc
Q 035603 306 IIVFTTNHVDKLDPALIRRGRMDKHIEMPYCCFEAFKVLAKNYLEIESHELFHEIGSLLGETDITPADVAENLM 379 (431)
Q Consensus 306 ivI~TTN~~~~Ld~AllRpGRfd~~I~~~~p~~~~r~~i~~~~l~~~~~~~~~~i~~l~~~~~~s~adI~~~l~ 379 (431)
+||+|||+++.|||||+||||||.+|+|++|+.++|++|++.|+.... ....++ ....|++++++..++.
T Consensus 335 iVI~ATN~~d~LDpALlRpGRfD~~I~~~~Pd~e~r~~Il~~~l~~~l-~l~~~l---~~~~g~~~a~~~al~~ 404 (512)
T TIGR03689 335 IVIGASNREDMIDPAILRPGRLDVKIRIERPDAEAAADIFSKYLTDSL-PLDADL---AEFDGDREATAAALIQ 404 (512)
T ss_pred EEEeccCChhhCCHhhcCccccceEEEeCCCCHHHHHHHHHHHhhccC-CchHHH---HHhcCCCHHHHHHHHH
Confidence 999999999999999999999999999999999999999999986421 222222 3345788887776544
No 24
>COG0464 SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones]
Probab=99.96 E-value=4.8e-28 Score=254.66 Aligned_cols=214 Identities=25% Similarity=0.346 Sum_probs=175.1
Q ss_pred eccCC-CCccccccChhhHHHHHHHHHHHHhCHHHHHHhCCCCCceeEEeCCCCCcHHHHHHHHHHHcCCCeEEecccCc
Q 035603 185 YFEHP-ATFDTLAMASKKKEAIKKDLIKFTEGKEYYAKIGKAWKRGYLLFGPPGTGKSTMIAAMANCLNYDVYDLELTSV 263 (431)
Q Consensus 185 ~~~~p-~~f~~l~g~~~~k~~i~~~l~~~~~~~~~~~~~g~~~~rg~LL~GPPGtGKTsla~aiA~~l~~~i~~l~~~~~ 263 (431)
.+..| .+|++++|.++.|+.+.+.+..++..++.|.+.|+..++|+|||||||||||++|+|+|++++.+|+.++.+++
T Consensus 233 ~~~~~~v~~~diggl~~~k~~l~e~v~~~~~~~e~~~~~~~~~~~giLl~GpPGtGKT~lAkava~~~~~~fi~v~~~~l 312 (494)
T COG0464 233 LFEDEDVTLDDIGGLEEAKEELKEAIETPLKRPELFRKLGLRPPKGVLLYGPPGTGKTLLAKAVALESRSRFISVKGSEL 312 (494)
T ss_pred ccCCCCcceehhhcHHHHHHHHHHHHHhHhhChHHHHhcCCCCCCeeEEECCCCCCHHHHHHHHHhhCCCeEEEeeCHHH
Confidence 34444 89999999999999999999999999999999999999999999999999999999999999999999988765
Q ss_pred ------CChHHHHHHHHHhhhc-----------------c----cchhhHHHHHHHHhcCcccCCCCceEEEEecCCCCC
Q 035603 264 ------ENNNELRSLLVDISSK-----------------K----KKSNVTLSGLLNCIGGLWSTCGGERIIVFTTNHVDK 316 (431)
Q Consensus 264 ------~~~~~l~~l~~~~~~~-----------------~----~~~~~~~s~lL~~ldg~~~~~~~~~ivI~TTN~~~~ 316 (431)
++...++++|..+... . ......+++||.++||+... ++++||+|||+|+.
T Consensus 313 ~sk~vGesek~ir~~F~~A~~~~p~iiFiDEiDs~~~~r~~~~~~~~~r~~~~lL~~~d~~e~~--~~v~vi~aTN~p~~ 390 (494)
T COG0464 313 LSKWVGESEKNIRELFEKARKLAPSIIFIDEIDSLASGRGPSEDGSGRRVVGQLLTELDGIEKA--EGVLVIAATNRPDD 390 (494)
T ss_pred hccccchHHHHHHHHHHHHHcCCCcEEEEEchhhhhccCCCCCchHHHHHHHHHHHHhcCCCcc--CceEEEecCCCccc
Confidence 3567899999888744 1 11248999999999999654 44999999999999
Q ss_pred CChhhhccCceeEEEEcCCCCHHHHHHHHHHhhchhcch--hHHHHHhHhc-cCCCCHHHHHHHhcccCCC----C-CHH
Q 035603 317 LDPALIRRGRMDKHIEMPYCCFEAFKVLAKNYLEIESHE--LFHEIGSLLG-ETDITPADVAENLMPKSDE----D-DAG 388 (431)
Q Consensus 317 Ld~AllRpGRfd~~I~~~~p~~~~r~~i~~~~l~~~~~~--~~~~i~~l~~-~~~~s~adI~~~l~~~~~~----~-~~~ 388 (431)
||||++||||||..|++|+|+.++|..+++.++...... ...++..+++ +.|+|++||..++..+... . ...
T Consensus 391 ld~a~lR~gRfd~~i~v~~pd~~~r~~i~~~~~~~~~~~~~~~~~~~~l~~~t~~~sgadi~~i~~ea~~~~~~~~~~~~ 470 (494)
T COG0464 391 LDPALLRPGRFDRLIYVPLPDLEERLEIFKIHLRDKKPPLAEDVDLEELAEITEGYSGADIAALVREAALEALREARRRE 470 (494)
T ss_pred cCHhhcccCccceEeecCCCCHHHHHHHHHHHhcccCCcchhhhhHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHhccCC
Confidence 999999999999999999999999999999999743332 2233455555 4589999999887642210 0 223
Q ss_pred HHHHHHHHHHHH
Q 035603 389 TCLKNLIEALKA 400 (431)
Q Consensus 389 ~~l~~l~~~l~~ 400 (431)
..++++..++++
T Consensus 471 ~~~~~~~~a~~~ 482 (494)
T COG0464 471 VTLDDFLDALKK 482 (494)
T ss_pred ccHHHHHHHHHh
Confidence 455666666655
No 25
>COG1223 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=99.95 E-value=6.3e-28 Score=224.72 Aligned_cols=185 Identities=19% Similarity=0.307 Sum_probs=156.9
Q ss_pred CCCCccccccChhhHHHHHHHHHHHHhCHHHHHHhCCCCCceeEEeCCCCCcHHHHHHHHHHHcCCCeEEecccCc----
Q 035603 188 HPATFDTLAMASKKKEAIKKDLIKFTEGKEYYAKIGKAWKRGYLLFGPPGTGKSTMIAAMANCLNYDVYDLELTSV---- 263 (431)
Q Consensus 188 ~p~~f~~l~g~~~~k~~i~~~l~~~~~~~~~~~~~g~~~~rg~LL~GPPGtGKTsla~aiA~~l~~~i~~l~~~~~---- 263 (431)
...+|++|+|+++.|+.- ..+..|+.+|+.|..| -|+.+|||||||||||++|+|+|++.+.+++.+..+.+
T Consensus 116 ~~it~ddViGqEeAK~kc-rli~~yLenPe~Fg~W---APknVLFyGppGTGKTm~Akalane~kvp~l~vkat~liGeh 191 (368)
T COG1223 116 SDITLDDVIGQEEAKRKC-RLIMEYLENPERFGDW---APKNVLFYGPPGTGKTMMAKALANEAKVPLLLVKATELIGEH 191 (368)
T ss_pred ccccHhhhhchHHHHHHH-HHHHHHhhChHHhccc---CcceeEEECCCCccHHHHHHHHhcccCCceEEechHHHHHHH
Confidence 346899999999999886 5688999999988876 37899999999999999999999999999999998876
Q ss_pred --CChHHHHHHHHHhhhc----------------------ccchhhHHHHHHHHhcCcccCCCCceEEEEecCCCCCCCh
Q 035603 264 --ENNNELRSLLVDISSK----------------------KKKSNVTLSGLLNCIGGLWSTCGGERIIVFTTNHVDKLDP 319 (431)
Q Consensus 264 --~~~~~l~~l~~~~~~~----------------------~~~~~~~~s~lL~~ldg~~~~~~~~~ivI~TTN~~~~Ld~ 319 (431)
.....+++++..+... .++....++.||..|||+..+ ++++.|++||+|+.|||
T Consensus 192 VGdgar~Ihely~rA~~~aPcivFiDE~DAiaLdRryQelRGDVsEiVNALLTelDgi~en--eGVvtIaaTN~p~~LD~ 269 (368)
T COG1223 192 VGDGARRIHELYERARKAAPCIVFIDELDAIALDRRYQELRGDVSEIVNALLTELDGIKEN--EGVVTIAATNRPELLDP 269 (368)
T ss_pred hhhHHHHHHHHHHHHHhcCCeEEEehhhhhhhhhhhHHHhcccHHHHHHHHHHhccCcccC--CceEEEeecCChhhcCH
Confidence 2345678888776654 445667899999999999754 55999999999999999
Q ss_pred hhhccCceeEEEEcCCCCHHHHHHHHHHhhchhcchhHHHHHhHhcc-CCCCHHHHHHHhcc
Q 035603 320 ALIRRGRMDKHIEMPYCCFEAFKVLAKNYLEIESHELFHEIGSLLGE-TDITPADVAENLMP 380 (431)
Q Consensus 320 AllRpGRfd~~I~~~~p~~~~r~~i~~~~l~~~~~~~~~~i~~l~~~-~~~s~adI~~~l~~ 380 (431)
|+.. ||...|+|.+|+.++|..|+..|....+......++.++.. .|+|+.||.+-+++
T Consensus 270 aiRs--RFEeEIEF~LP~~eEr~~ile~y~k~~Plpv~~~~~~~~~~t~g~SgRdikekvlK 329 (368)
T COG1223 270 AIRS--RFEEEIEFKLPNDEERLEILEYYAKKFPLPVDADLRYLAAKTKGMSGRDIKEKVLK 329 (368)
T ss_pred HHHh--hhhheeeeeCCChHHHHHHHHHHHHhCCCccccCHHHHHHHhCCCCchhHHHHHHH
Confidence 9998 99999999999999999999999876555544446666663 49999999988775
No 26
>CHL00176 ftsH cell division protein; Validated
Probab=99.95 E-value=1.8e-27 Score=254.32 Aligned_cols=213 Identities=23% Similarity=0.330 Sum_probs=171.0
Q ss_pred cCCCCccccccChhhHHHHHHHHHHHHhCHHHHHHhCCCCCceeEEeCCCCCcHHHHHHHHHHHcCCCeEEecccCcC--
Q 035603 187 EHPATFDTLAMASKKKEAIKKDLIKFTEGKEYYAKIGKAWKRGYLLFGPPGTGKSTMIAAMANCLNYDVYDLELTSVE-- 264 (431)
Q Consensus 187 ~~p~~f~~l~g~~~~k~~i~~~l~~~~~~~~~~~~~g~~~~rg~LL~GPPGtGKTsla~aiA~~l~~~i~~l~~~~~~-- 264 (431)
....+|++|+|.+++|+++.+ +..++..++.|..+|...++|+||+||||||||++|+++|++++.+++.++++.+.
T Consensus 177 ~~~~~f~dv~G~~~~k~~l~e-iv~~lk~~~~~~~~g~~~p~gVLL~GPpGTGKT~LAralA~e~~~p~i~is~s~f~~~ 255 (638)
T CHL00176 177 DTGITFRDIAGIEEAKEEFEE-VVSFLKKPERFTAVGAKIPKGVLLVGPPGTGKTLLAKAIAGEAEVPFFSISGSEFVEM 255 (638)
T ss_pred CCCCCHHhccChHHHHHHHHH-HHHHHhCHHHHhhccCCCCceEEEECCCCCCHHHHHHHHHHHhCCCeeeccHHHHHHH
Confidence 345899999999999999865 66788999999999999999999999999999999999999999999999887642
Q ss_pred ----ChHHHHHHHHHhhhc------------------------ccchhhHHHHHHHHhcCcccCCCCceEEEEecCCCCC
Q 035603 265 ----NNNELRSLLVDISSK------------------------KKKSNVTLSGLLNCIGGLWSTCGGERIIVFTTNHVDK 316 (431)
Q Consensus 265 ----~~~~l~~l~~~~~~~------------------------~~~~~~~~s~lL~~ldg~~~~~~~~~ivI~TTN~~~~ 316 (431)
....++.+|..+... ......+++.||..+||+... .+++||+|||+++.
T Consensus 256 ~~g~~~~~vr~lF~~A~~~~P~ILfIDEID~l~~~r~~~~~~~~~e~~~~L~~LL~~~dg~~~~--~~ViVIaaTN~~~~ 333 (638)
T CHL00176 256 FVGVGAARVRDLFKKAKENSPCIVFIDEIDAVGRQRGAGIGGGNDEREQTLNQLLTEMDGFKGN--KGVIVIAATNRVDI 333 (638)
T ss_pred hhhhhHHHHHHHHHHHhcCCCcEEEEecchhhhhcccCCCCCCcHHHHHHHHHHHhhhccccCC--CCeeEEEecCchHh
Confidence 345677777766543 012245789999999998654 34999999999999
Q ss_pred CChhhhccCceeEEEEcCCCCHHHHHHHHHHhhchhcchhHHHHHhHhcc-CCCCHHHHHHHhccc----CCCCCHHHHH
Q 035603 317 LDPALIRRGRMDKHIEMPYCCFEAFKVLAKNYLEIESHELFHEIGSLLGE-TDITPADVAENLMPK----SDEDDAGTCL 391 (431)
Q Consensus 317 Ld~AllRpGRfd~~I~~~~p~~~~r~~i~~~~l~~~~~~~~~~i~~l~~~-~~~s~adI~~~l~~~----~~~~~~~~~l 391 (431)
|||||+||||||.+|+++.|+.++|..|++.++..........+..++.. .|++++||..++..+ ........+.
T Consensus 334 LD~ALlRpGRFd~~I~v~lPd~~~R~~IL~~~l~~~~~~~d~~l~~lA~~t~G~sgaDL~~lvneAal~a~r~~~~~It~ 413 (638)
T CHL00176 334 LDAALLRPGRFDRQITVSLPDREGRLDILKVHARNKKLSPDVSLELIARRTPGFSGADLANLLNEAAILTARRKKATITM 413 (638)
T ss_pred hhhhhhccccCceEEEECCCCHHHHHHHHHHHHhhcccchhHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHhCCCCcCH
Confidence 99999999999999999999999999999999876433334456677764 499999999877642 1222333556
Q ss_pred HHHHHHHHHHH
Q 035603 392 KNLIEALKAAK 402 (431)
Q Consensus 392 ~~l~~~l~~~~ 402 (431)
+++..++.+..
T Consensus 414 ~dl~~Ai~rv~ 424 (638)
T CHL00176 414 KEIDTAIDRVI 424 (638)
T ss_pred HHHHHHHHHHH
Confidence 77777776653
No 27
>KOG0737 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.95 E-value=1.2e-27 Score=233.24 Aligned_cols=189 Identities=21% Similarity=0.262 Sum_probs=160.3
Q ss_pred CCccccccChhhHHHHHHHHHHHHhCHHHHHHhC-CCCCceeEEeCCCCCcHHHHHHHHHHHcCCCeEEecccCcCC---
Q 035603 190 ATFDTLAMASKKKEAIKKDLIKFTEGKEYYAKIG-KAWKRGYLLFGPPGTGKSTMIAAMANCLNYDVYDLELTSVEN--- 265 (431)
Q Consensus 190 ~~f~~l~g~~~~k~~i~~~l~~~~~~~~~~~~~g-~~~~rg~LL~GPPGtGKTsla~aiA~~l~~~i~~l~~~~~~~--- 265 (431)
.+|++|+|.+.+++++.+.+..++..|++|...+ ..+++|+|||||||||||++|+|+|++.|.+|+.++.+.+.+
T Consensus 89 v~f~DIggLe~v~~~L~e~VilPlr~pelF~~g~Ll~p~kGiLL~GPpG~GKTmlAKA~Akeaga~fInv~~s~lt~KWf 168 (386)
T KOG0737|consen 89 VSFDDIGGLEEVKDALQELVILPLRRPELFAKGKLLRPPKGILLYGPPGTGKTMLAKAIAKEAGANFINVSVSNLTSKWF 168 (386)
T ss_pred eehhhccchHHHHHHHHHHHhhcccchhhhcccccccCCccceecCCCCchHHHHHHHHHHHcCCCcceeeccccchhhH
Confidence 6799999999999999999999999999997433 345789999999999999999999999999999999998733
Q ss_pred ---hHHHHHHHHHhhhc---------------------ccchhhHHHHHHHHhcCcccCCCCceEEEEecCCCCCCChhh
Q 035603 266 ---NNELRSLLVDISSK---------------------KKKSNVTLSGLLNCIGGLWSTCGGERIIVFTTNHVDKLDPAL 321 (431)
Q Consensus 266 ---~~~l~~l~~~~~~~---------------------~~~~~~~~s~lL~~ldg~~~~~~~~~ivI~TTN~~~~Ld~Al 321 (431)
..-++.+|.-+..- +.......++|+...||+.+..+..++|+++||+|..||.|+
T Consensus 169 gE~eKlv~AvFslAsKl~P~iIFIDEvds~L~~R~s~dHEa~a~mK~eFM~~WDGl~s~~~~rVlVlgATNRP~DlDeAi 248 (386)
T KOG0737|consen 169 GEAQKLVKAVFSLASKLQPSIIFIDEVDSFLGQRRSTDHEATAMMKNEFMALWDGLSSKDSERVLVLGATNRPFDLDEAI 248 (386)
T ss_pred HHHHHHHHHHHhhhhhcCcceeehhhHHHHHhhcccchHHHHHHHHHHHHHHhccccCCCCceEEEEeCCCCCccHHHHH
Confidence 23344555444322 334456788999999999998888899999999999999999
Q ss_pred hccCceeEEEEcCCCCHHHHHHHHHHhhchhcchhHHHHHhHhccC-CCCHHHHHHHhcc
Q 035603 322 IRRGRMDKHIEMPYCCFEAFKVLAKNYLEIESHELFHEIGSLLGET-DITPADVAENLMP 380 (431)
Q Consensus 322 lRpGRfd~~I~~~~p~~~~r~~i~~~~l~~~~~~~~~~i~~l~~~~-~~s~adI~~~l~~ 380 (431)
+| ||...++++.|+.++|+.|++-+|..+..+..-++.+++..+ |||+.||.++|..
T Consensus 249 iR--R~p~rf~V~lP~~~qR~kILkviLk~e~~e~~vD~~~iA~~t~GySGSDLkelC~~ 306 (386)
T KOG0737|consen 249 IR--RLPRRFHVGLPDAEQRRKILKVILKKEKLEDDVDLDEIAQMTEGYSGSDLKELCRL 306 (386)
T ss_pred HH--hCcceeeeCCCchhhHHHHHHHHhcccccCcccCHHHHHHhcCCCcHHHHHHHHHH
Confidence 99 999999999999999999999999876655444566666644 9999999999884
No 28
>KOG0739 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.95 E-value=2.6e-28 Score=230.95 Aligned_cols=187 Identities=26% Similarity=0.328 Sum_probs=161.6
Q ss_pred eccCC-CCccccccChhhHHHHHHHHHHHHhCHHHHHHhCCCCCceeEEeCCCCCcHHHHHHHHHHHcCCCeEEecccCc
Q 035603 185 YFEHP-ATFDTLAMASKKKEAIKKDLIKFTEGKEYYAKIGKAWKRGYLLFGPPGTGKSTMIAAMANCLNYDVYDLELTSV 263 (431)
Q Consensus 185 ~~~~p-~~f~~l~g~~~~k~~i~~~l~~~~~~~~~~~~~g~~~~rg~LL~GPPGtGKTsla~aiA~~l~~~i~~l~~~~~ 263 (431)
..+.| ..|++|+|.+..|+.|.+.+..+++-|++|..-..|| ||+|||||||||||.||+|+|.+.+..|+.++.+++
T Consensus 124 v~EKPNVkWsDVAGLE~AKeALKEAVILPIKFPqlFtGkR~Pw-rgiLLyGPPGTGKSYLAKAVATEAnSTFFSvSSSDL 202 (439)
T KOG0739|consen 124 VREKPNVKWSDVAGLEGAKEALKEAVILPIKFPQLFTGKRKPW-RGILLYGPPGTGKSYLAKAVATEANSTFFSVSSSDL 202 (439)
T ss_pred hccCCCCchhhhccchhHHHHHHhheeecccchhhhcCCCCcc-eeEEEeCCCCCcHHHHHHHHHhhcCCceEEeehHHH
Confidence 34555 7899999999999999999999999999999877888 699999999999999999999999999999999887
Q ss_pred ------CChHHHHHHHHHhhhc---------------------ccchhhHHHHHHHHhcCcccCCCCceEEEEecCCCCC
Q 035603 264 ------ENNNELRSLLVDISSK---------------------KKKSNVTLSGLLNCIGGLWSTCGGERIIVFTTNHVDK 316 (431)
Q Consensus 264 ------~~~~~l~~l~~~~~~~---------------------~~~~~~~~s~lL~~ldg~~~~~~~~~ivI~TTN~~~~ 316 (431)
+++.-++.+|.-+... ...+++....||-.|.|+.. ..++++|+++||-|+.
T Consensus 203 vSKWmGESEkLVknLFemARe~kPSIIFiDEiDslcg~r~enEseasRRIKTEfLVQMqGVG~-d~~gvLVLgATNiPw~ 281 (439)
T KOG0739|consen 203 VSKWMGESEKLVKNLFEMARENKPSIIFIDEIDSLCGSRSENESEASRRIKTEFLVQMQGVGN-DNDGVLVLGATNIPWV 281 (439)
T ss_pred HHHHhccHHHHHHHHHHHHHhcCCcEEEeehhhhhccCCCCCchHHHHHHHHHHHHhhhcccc-CCCceEEEecCCCchh
Confidence 2334466777655443 33457788999999999975 4567999999999999
Q ss_pred CChhhhccCceeEEEEcCCCCHHHHHHHHHHhhchhcchh-HHHHHhHhccC-CCCHHHHH
Q 035603 317 LDPALIRRGRMDKHIEMPYCCFEAFKVLAKNYLEIESHEL-FHEIGSLLGET-DITPADVA 375 (431)
Q Consensus 317 Ld~AllRpGRfd~~I~~~~p~~~~r~~i~~~~l~~~~~~~-~~~i~~l~~~~-~~s~adI~ 375 (431)
||.|+.| ||+..|++|+|...+|..|++.+++...|.+ ..++..|+..+ |||++||.
T Consensus 282 LDsAIRR--RFekRIYIPLPe~~AR~~MF~lhlG~tp~~LT~~d~~eL~~kTeGySGsDis 340 (439)
T KOG0739|consen 282 LDSAIRR--RFEKRIYIPLPEAHARARMFKLHLGDTPHVLTEQDFKELARKTEGYSGSDIS 340 (439)
T ss_pred HHHHHHH--HhhcceeccCCcHHHhhhhheeccCCCccccchhhHHHHHhhcCCCCcCceE
Confidence 9999999 9999999999999999999999999888765 45688888744 99999986
No 29
>KOG0651 consensus 26S proteasome regulatory complex, ATPase RPT4 [Posttranslational modification, protein turnover, chaperones]
Probab=99.95 E-value=1.4e-27 Score=227.31 Aligned_cols=213 Identities=21% Similarity=0.303 Sum_probs=169.9
Q ss_pred CCccccccChhhHHHHHHHHHHHHhCHHHHHHhCCCCCceeEEeCCCCCcHHHHHHHHHHHcCCCeEEecccCcC-----
Q 035603 190 ATFDTLAMASKKKEAIKKDLIKFTEGKEYYAKIGKAWKRGYLLFGPPGTGKSTMIAAMANCLNYDVYDLELTSVE----- 264 (431)
Q Consensus 190 ~~f~~l~g~~~~k~~i~~~l~~~~~~~~~~~~~g~~~~rg~LL~GPPGtGKTsla~aiA~~l~~~i~~l~~~~~~----- 264 (431)
.+|+.++|+-++..++.+-+..++.++..+.++|+.+|.|+|||||||||||.+|+++|..+|++++.+..+.+.
T Consensus 129 ~s~~~~ggl~~qirelre~ielpl~np~lf~rvgIk~Pkg~ll~GppGtGKTlla~~Vaa~mg~nfl~v~ss~lv~kyiG 208 (388)
T KOG0651|consen 129 ISFENVGGLFYQIRELREVIELPLTNPELFLRVGIKPPKGLLLYGPPGTGKTLLARAVAATMGVNFLKVVSSALVDKYIG 208 (388)
T ss_pred cCHHHhCChHHHHHHHHhheEeeccCchhccccCCCCCceeEEeCCCCCchhHHHHHHHHhcCCceEEeeHhhhhhhhcc
Confidence 489999999999999999999999999999999999999999999999999999999999999999999888763
Q ss_pred -ChHHHHHHHHHhhhc------------------------ccchhhHHHHHHHHhcCcccCCCCceEEEEecCCCCCCCh
Q 035603 265 -NNNELRSLLVDISSK------------------------KKKSNVTLSGLLNCIGGLWSTCGGERIIVFTTNHVDKLDP 319 (431)
Q Consensus 265 -~~~~l~~l~~~~~~~------------------------~~~~~~~~s~lL~~ldg~~~~~~~~~ivI~TTN~~~~Ld~ 319 (431)
...-+++.|..+... +..-..++-.|||.|||+.... .+-+|+|||+|+.|||
T Consensus 209 EsaRlIRemf~yA~~~~pciifmdeiDAigGRr~se~Ts~dreiqrTLMeLlnqmdgfd~l~--rVk~ImatNrpdtLdp 286 (388)
T KOG0651|consen 209 ESARLIRDMFRYAREVIPCIIFMDEIDAIGGRRFSEGTSSDREIQRTLMELLNQMDGFDTLH--RVKTIMATNRPDTLDP 286 (388)
T ss_pred cHHHHHHHHHHHHhhhCceEEeehhhhhhccEEeccccchhHHHHHHHHHHHHhhccchhcc--cccEEEecCCccccch
Confidence 223466777665543 2334678999999999997654 4899999999999999
Q ss_pred hhhccCceeEEEEcCCCCHHHHHHHHHHhhchhc-c--hhHHHHHhHhccCCCCHHHHHHHhcccC---CCCCH-HHHHH
Q 035603 320 ALIRRGRMDKHIEMPYCCFEAFKVLAKNYLEIES-H--ELFHEIGSLLGETDITPADVAENLMPKS---DEDDA-GTCLK 392 (431)
Q Consensus 320 AllRpGRfd~~I~~~~p~~~~r~~i~~~~l~~~~-~--~~~~~i~~l~~~~~~s~adI~~~l~~~~---~~~~~-~~~l~ 392 (431)
||+||||+|+.+++|.|+...|..+++.+-.... + -..+.+.++.+ ++.++|+.+.+...- .+++. ..-.+
T Consensus 287 aLlRpGRldrk~~iPlpne~~r~~I~Kih~~~i~~~Geid~eaivK~~d--~f~gad~rn~~tEag~Fa~~~~~~~vl~E 364 (388)
T KOG0651|consen 287 ALLRPGRLDRKVEIPLPNEQARLGILKIHVQPIDFHGEIDDEAILKLVD--GFNGADLRNVCTEAGMFAIPEERDEVLHE 364 (388)
T ss_pred hhcCCccccceeccCCcchhhceeeEeeccccccccccccHHHHHHHHh--ccChHHHhhhcccccccccchhhHHHhHH
Confidence 9999999999999999999999998887654321 1 23555666665 899999887776522 22222 24446
Q ss_pred HHHHHHHHHHHHHH
Q 035603 393 NLIEALKAAKEKAK 406 (431)
Q Consensus 393 ~l~~~l~~~~~~~~ 406 (431)
++..+..+.....+
T Consensus 365 d~~k~vrk~~~~kk 378 (388)
T KOG0651|consen 365 DFMKLVRKQADAKK 378 (388)
T ss_pred HHHHHHHHHHHHHH
Confidence 67666666554433
No 30
>TIGR01242 26Sp45 26S proteasome subunit P45 family. Many proteins may score above the trusted cutoff because an internal
Probab=99.94 E-value=1.6e-26 Score=234.20 Aligned_cols=192 Identities=23% Similarity=0.304 Sum_probs=153.5
Q ss_pred cCCCCccccccChhhHHHHHHHHHHHHhCHHHHHHhCCCCCceeEEeCCCCCcHHHHHHHHHHHcCCCeEEecccCcC--
Q 035603 187 EHPATFDTLAMASKKKEAIKKDLIKFTEGKEYYAKIGKAWKRGYLLFGPPGTGKSTMIAAMANCLNYDVYDLELTSVE-- 264 (431)
Q Consensus 187 ~~p~~f~~l~g~~~~k~~i~~~l~~~~~~~~~~~~~g~~~~rg~LL~GPPGtGKTsla~aiA~~l~~~i~~l~~~~~~-- 264 (431)
.+..+|++|+|.+++++.|.+.+..++.+++.|..+|+.+++|+|||||||||||++|+++|++++.+++.+..+.+.
T Consensus 116 ~p~~~~~di~Gl~~~~~~l~~~i~~~~~~~~~~~~~g~~~p~gvLL~GppGtGKT~lakaia~~l~~~~~~v~~~~l~~~ 195 (364)
T TIGR01242 116 RPNVSYEDIGGLEEQIREIREAVELPLKHPELFEEVGIEPPKGVLLYGPPGTGKTLLAKAVAHETNATFIRVVGSELVRK 195 (364)
T ss_pred CCCCCHHHhCChHHHHHHHHHHHHHHhcCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhCCCCEEecchHHHHHH
Confidence 345789999999999999999999999999999999999999999999999999999999999999999988765431
Q ss_pred ----ChHHHHHHHHHhhhc------------------------ccchhhHHHHHHHHhcCcccCCCCceEEEEecCCCCC
Q 035603 265 ----NNNELRSLLVDISSK------------------------KKKSNVTLSGLLNCIGGLWSTCGGERIIVFTTNHVDK 316 (431)
Q Consensus 265 ----~~~~l~~l~~~~~~~------------------------~~~~~~~~s~lL~~ldg~~~~~~~~~ivI~TTN~~~~ 316 (431)
....++.+|..+... +......+..+|+.+|++... +++.||+|||+++.
T Consensus 196 ~~g~~~~~i~~~f~~a~~~~p~il~iDEiD~l~~~~~~~~~~~~~~~~~~l~~ll~~ld~~~~~--~~v~vI~ttn~~~~ 273 (364)
T TIGR01242 196 YIGEGARLVREIFELAKEKAPSIIFIDEIDAIAAKRTDSGTSGDREVQRTLMQLLAELDGFDPR--GNVKVIAATNRPDI 273 (364)
T ss_pred hhhHHHHHHHHHHHHHHhcCCcEEEhhhhhhhccccccCCCCccHHHHHHHHHHHHHhhCCCCC--CCEEEEEecCChhh
Confidence 123345555443321 011235678889999987443 45999999999999
Q ss_pred CChhhhccCceeEEEEcCCCCHHHHHHHHHHhhchhcchhHHHHHhHhcc-CCCCHHHHHHHhcc
Q 035603 317 LDPALIRRGRMDKHIEMPYCCFEAFKVLAKNYLEIESHELFHEIGSLLGE-TDITPADVAENLMP 380 (431)
Q Consensus 317 Ld~AllRpGRfd~~I~~~~p~~~~r~~i~~~~l~~~~~~~~~~i~~l~~~-~~~s~adI~~~l~~ 380 (431)
+|++++||||||..|+++.|+.++|..|++.++.........++..++.. .|++++||..++..
T Consensus 274 ld~al~r~grfd~~i~v~~P~~~~r~~Il~~~~~~~~l~~~~~~~~la~~t~g~sg~dl~~l~~~ 338 (364)
T TIGR01242 274 LDPALLRPGRFDRIIEVPLPDFEGRLEILKIHTRKMKLAEDVDLEAIAKMTEGASGADLKAICTE 338 (364)
T ss_pred CChhhcCcccCceEEEeCCcCHHHHHHHHHHHHhcCCCCccCCHHHHHHHcCCCCHHHHHHHHHH
Confidence 99999999999999999999999999999998754332221234455553 39999999977663
No 31
>CHL00206 ycf2 Ycf2; Provisional
Probab=99.93 E-value=5.6e-26 Score=255.72 Aligned_cols=190 Identities=14% Similarity=0.131 Sum_probs=137.6
Q ss_pred CHHHHHHhCCCCCceeEEeCCCCCcHHHHHHHHHHHcCCCeEEecccCcCC-----------------------------
Q 035603 215 GKEYYAKIGKAWKRGYLLFGPPGTGKSTMIAAMANCLNYDVYDLELTSVEN----------------------------- 265 (431)
Q Consensus 215 ~~~~~~~~g~~~~rg~LL~GPPGtGKTsla~aiA~~l~~~i~~l~~~~~~~----------------------------- 265 (431)
++..+.++|..+|||+||+||||||||+||+|+|++++.+++.++++++-.
T Consensus 1618 ~kP~slrLGl~pPKGILLiGPPGTGKTlLAKALA~es~VPFIsISgs~fl~~~~~~~~~d~i~iges~~~~~~~~~~~~~ 1697 (2281)
T CHL00206 1618 GKPFSLRLALSPSRGILVIGSIGTGRSYLVKYLATNSYVPFITVFLNKFLDNKPKGFLIDDIDIDDSDDIDDSDDIDRDL 1697 (2281)
T ss_pred CcCHHHHcCCCCCCceEEECCCCCCHHHHHHHHHHhcCCceEEEEHHHHhhccccccccccccccccccccccccccccc
Confidence 456778899999999999999999999999999999999999998765421
Q ss_pred --------------------hHHHHHHHHHhhhc---------------ccchhhHHHHHHHHhcCccc-CCCCceEEEE
Q 035603 266 --------------------NNELRSLLVDISSK---------------KKKSNVTLSGLLNCIGGLWS-TCGGERIIVF 309 (431)
Q Consensus 266 --------------------~~~l~~l~~~~~~~---------------~~~~~~~~s~lL~~ldg~~~-~~~~~~ivI~ 309 (431)
...|+.+|..|... ......++++||+.|||... ....+++|||
T Consensus 1698 ~~e~~e~~n~~~~~m~~~e~~~rIr~lFelARk~SPCIIFIDEIDaL~~~ds~~ltL~qLLneLDg~~~~~s~~~VIVIA 1777 (2281)
T CHL00206 1698 DTELLTMMNALTMDMMPKIDRFYITLQFELAKAMSPCIIWIPNIHDLNVNESNYLSLGLLVNSLSRDCERCSTRNILVIA 1777 (2281)
T ss_pred chhhhhhcchhhhhhhhhhhHHHHHHHHHHHHHCCCeEEEEEchhhcCCCccceehHHHHHHHhccccccCCCCCEEEEE
Confidence 01256667766554 12223468999999998743 2345699999
Q ss_pred ecCCCCCCChhhhccCceeEEEEcCCCCHHHHHHHHHHhhchhc---chhHHHHHhHhcc-CCCCHHHHHHHhcccC---
Q 035603 310 TTNHVDKLDPALIRRGRMDKHIEMPYCCFEAFKVLAKNYLEIES---HELFHEIGSLLGE-TDITPADVAENLMPKS--- 382 (431)
Q Consensus 310 TTN~~~~Ld~AllRpGRfd~~I~~~~p~~~~r~~i~~~~l~~~~---~~~~~~i~~l~~~-~~~s~adI~~~l~~~~--- 382 (431)
|||+|+.|||||+||||||++|+++.|+..+|+.++...+.... .....++..++.. .|||+|||+.++..+.
T Consensus 1778 ATNRPD~LDPALLRPGRFDR~I~Ir~Pd~p~R~kiL~ILl~tkg~~L~~~~vdl~~LA~~T~GfSGADLanLvNEAaliA 1857 (2281)
T CHL00206 1778 STHIPQKVDPALIAPNKLNTCIKIRRLLIPQQRKHFFTLSYTRGFHLEKKMFHTNGFGSITMGSNARDLVALTNEALSIS 1857 (2281)
T ss_pred eCCCcccCCHhHcCCCCCCeEEEeCCCCchhHHHHHHHHHhhcCCCCCcccccHHHHHHhCCCCCHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999988765432111 1111235566664 4999999998765421
Q ss_pred -CCCCHHHHHHHHHHHHHHHHHH
Q 035603 383 -DEDDAGTCLKNLIEALKAAKEK 404 (431)
Q Consensus 383 -~~~~~~~~l~~l~~~l~~~~~~ 404 (431)
.......+.+++..|+.+....
T Consensus 1858 irq~ks~Id~~~I~~Al~Rq~~g 1880 (2281)
T CHL00206 1858 ITQKKSIIDTNTIRSALHRQTWD 1880 (2281)
T ss_pred HHcCCCccCHHHHHHHHHHHHhh
Confidence 2222234455666666655433
No 32
>PRK10733 hflB ATP-dependent metalloprotease; Reviewed
Probab=99.93 E-value=2.1e-25 Score=240.41 Aligned_cols=210 Identities=20% Similarity=0.306 Sum_probs=165.3
Q ss_pred CCCccccccChhhHHHHHHHHHHHHhCHHHHHHhCCCCCceeEEeCCCCCcHHHHHHHHHHHcCCCeEEecccCc-----
Q 035603 189 PATFDTLAMASKKKEAIKKDLIKFTEGKEYYAKIGKAWKRGYLLFGPPGTGKSTMIAAMANCLNYDVYDLELTSV----- 263 (431)
Q Consensus 189 p~~f~~l~g~~~~k~~i~~~l~~~~~~~~~~~~~g~~~~rg~LL~GPPGtGKTsla~aiA~~l~~~i~~l~~~~~----- 263 (431)
..+|+++.|.+..++.+.+ +..++..+..|...|...++|+||+||||||||++++++|++++.+++.++.+++
T Consensus 148 ~~~~~di~g~~~~~~~l~~-i~~~~~~~~~~~~~~~~~~~gill~G~~G~GKt~~~~~~a~~~~~~f~~is~~~~~~~~~ 226 (644)
T PRK10733 148 KTTFADVAGCDEAKEEVAE-LVEYLREPSRFQKLGGKIPKGVLMVGPPGTGKTLLAKAIAGEAKVPFFTISGSDFVEMFV 226 (644)
T ss_pred hCcHHHHcCHHHHHHHHHH-HHHHhhCHHHHHhcCCCCCCcEEEECCCCCCHHHHHHHHHHHcCCCEEEEehHHhHHhhh
Confidence 4679999999999999866 5556778888999999999999999999999999999999999999999988654
Q ss_pred -CChHHHHHHHHHhhhc------------------------ccchhhHHHHHHHHhcCcccCCCCceEEEEecCCCCCCC
Q 035603 264 -ENNNELRSLLVDISSK------------------------KKKSNVTLSGLLNCIGGLWSTCGGERIIVFTTNHVDKLD 318 (431)
Q Consensus 264 -~~~~~l~~l~~~~~~~------------------------~~~~~~~~s~lL~~ldg~~~~~~~~~ivI~TTN~~~~Ld 318 (431)
.+...++.+|..+... ......++++||..|||+.... +++||+|||+|+.||
T Consensus 227 g~~~~~~~~~f~~a~~~~P~IifIDEiD~l~~~r~~~~~g~~~~~~~~ln~lL~~mdg~~~~~--~vivIaaTN~p~~lD 304 (644)
T PRK10733 227 GVGASRVRDMFEQAKKAAPCIIFIDEIDAVGRQRGAGLGGGHDEREQTLNQMLVEMDGFEGNE--GIIVIAATNRPDVLD 304 (644)
T ss_pred cccHHHHHHHHHHHHhcCCcEEEehhHhhhhhccCCCCCCCchHHHHHHHHHHHhhhcccCCC--CeeEEEecCChhhcC
Confidence 2345677777665433 0112458899999999996544 499999999999999
Q ss_pred hhhhccCceeEEEEcCCCCHHHHHHHHHHhhchhcchhHHHHHhHhc-cCCCCHHHHHHHhcccC----CCCCHHHHHHH
Q 035603 319 PALIRRGRMDKHIEMPYCCFEAFKVLAKNYLEIESHELFHEIGSLLG-ETDITPADVAENLMPKS----DEDDAGTCLKN 393 (431)
Q Consensus 319 ~AllRpGRfd~~I~~~~p~~~~r~~i~~~~l~~~~~~~~~~i~~l~~-~~~~s~adI~~~l~~~~----~~~~~~~~l~~ 393 (431)
||++||||||++|++++|+.++|.+|++.|+.........++..++. ..|||+|||.+++..+. ..+.......+
T Consensus 305 ~Al~RpgRfdr~i~v~~Pd~~~R~~Il~~~~~~~~l~~~~d~~~la~~t~G~sgadl~~l~~eAa~~a~r~~~~~i~~~d 384 (644)
T PRK10733 305 PALLRPGRFDRQVVVGLPDVRGREQILKVHMRRVPLAPDIDAAIIARGTPGFSGADLANLVNEAALFAARGNKRVVSMVE 384 (644)
T ss_pred HHHhCCcccceEEEcCCCCHHHHHHHHHHHhhcCCCCCcCCHHHHHhhCCCCCHHHHHHHHHHHHHHHHHcCCCcccHHH
Confidence 99999999999999999999999999999987543322234555666 44999999998886521 12223345566
Q ss_pred HHHHHHHH
Q 035603 394 LIEALKAA 401 (431)
Q Consensus 394 l~~~l~~~ 401 (431)
+..++.+.
T Consensus 385 ~~~a~~~v 392 (644)
T PRK10733 385 FEKAKDKI 392 (644)
T ss_pred HHHHHHHH
Confidence 66665544
No 33
>PLN00020 ribulose bisphosphate carboxylase/oxygenase activase -RuBisCO activase (RCA); Provisional
Probab=99.91 E-value=7.3e-24 Score=208.87 Aligned_cols=176 Identities=17% Similarity=0.151 Sum_probs=129.2
Q ss_pred cCCCCccccccChhhHHHHHHHHHHHHhCHHHHHHhCCCCCceeEEeCCCCCcHHHHHHHHHHHcCCCeEEecccCc---
Q 035603 187 EHPATFDTLAMASKKKEAIKKDLIKFTEGKEYYAKIGKAWKRGYLLFGPPGTGKSTMIAAMANCLNYDVYDLELTSV--- 263 (431)
Q Consensus 187 ~~p~~f~~l~g~~~~k~~i~~~l~~~~~~~~~~~~~g~~~~rg~LL~GPPGtGKTsla~aiA~~l~~~i~~l~~~~~--- 263 (431)
....+|+++.|.=.+-....+-+...+ .+.+....|+.+|+|++||||||||||++|+++|+++|.+++.++.+++
T Consensus 109 ~~~~~f~~~~g~~~~~p~f~dk~~~hi-~kn~l~~~~ik~PlgllL~GPPGcGKTllAraiA~elg~~~i~vsa~eL~sk 187 (413)
T PLN00020 109 QRTRSFDNLVGGYYIAPAFMDKVAVHI-AKNFLALPNIKVPLILGIWGGKGQGKSFQCELVFKKMGIEPIVMSAGELESE 187 (413)
T ss_pred hhhcchhhhcCccccCHHHHHHHHHHH-HhhhhhccCCCCCeEEEeeCCCCCCHHHHHHHHHHHcCCCeEEEEHHHhhcC
Confidence 344667777444444333333332222 2344455789999999999999999999999999999999999998877
Q ss_pred ---CChHHHHHHHHHhhh------c----------------c----cc-hhhHHHHHHHHhcCc--------c--cCCCC
Q 035603 264 ---ENNNELRSLLVDISS------K----------------K----KK-SNVTLSGLLNCIGGL--------W--STCGG 303 (431)
Q Consensus 264 ---~~~~~l~~l~~~~~~------~----------------~----~~-~~~~~s~lL~~ldg~--------~--~~~~~ 303 (431)
+++..|+++|..+.. + . .. .+....+||+.+|+. | .....
T Consensus 188 ~vGEsEk~IR~~F~~A~~~a~~~~aPcVLFIDEIDA~~g~r~~~~~tv~~qiV~~tLLnl~D~p~~v~l~G~w~~~~~~~ 267 (413)
T PLN00020 188 NAGEPGKLIRQRYREAADIIKKKGKMSCLFINDLDAGAGRFGTTQYTVNNQMVNGTLMNIADNPTNVSLGGDWREKEEIP 267 (413)
T ss_pred cCCcHHHHHHHHHHHHHHHhhccCCCeEEEEehhhhcCCCCCCCCcchHHHHHHHHHHHHhcCCccccccccccccccCC
Confidence 345779999987753 1 1 01 123347899998864 3 12345
Q ss_pred ceEEEEecCCCCCCChhhhccCceeEEEEcCCCCHHHHHHHHHHhhchhcchhHHHHHhHhcc
Q 035603 304 ERIIVFTTNHVDKLDPALIRRGRMDKHIEMPYCCFEAFKVLAKNYLEIESHELFHEIGSLLGE 366 (431)
Q Consensus 304 ~~ivI~TTN~~~~Ld~AllRpGRfd~~I~~~~p~~~~r~~i~~~~l~~~~~~~~~~i~~l~~~ 366 (431)
.++||+|||+|+.|||||+||||||..+ ..|+.++|..|++.++...... ..++.+++..
T Consensus 268 ~V~VIaTTNrpd~LDpALlRpGRfDk~i--~lPd~e~R~eIL~~~~r~~~l~-~~dv~~Lv~~ 327 (413)
T PLN00020 268 RVPIIVTGNDFSTLYAPLIRDGRMEKFY--WAPTREDRIGVVHGIFRDDGVS-REDVVKLVDT 327 (413)
T ss_pred CceEEEeCCCcccCCHhHcCCCCCCcee--CCCCHHHHHHHHHHHhccCCCC-HHHHHHHHHc
Confidence 6899999999999999999999999975 5899999999999998755332 4567777663
No 34
>KOG0732 consensus AAA+-type ATPase containing the bromodomain [Posttranslational modification, protein turnover, chaperones]
Probab=99.91 E-value=3e-24 Score=233.23 Aligned_cols=190 Identities=24% Similarity=0.290 Sum_probs=156.8
Q ss_pred CCCCccccccChhhHHHHHHHHHHHHhCHHHHHHhCCCCCceeEEeCCCCCcHHHHHHHHHHHcCC-----CeEEecccC
Q 035603 188 HPATFDTLAMASKKKEAIKKDLIKFTEGKEYYAKIGKAWKRGYLLFGPPGTGKSTMIAAMANCLNY-----DVYDLELTS 262 (431)
Q Consensus 188 ~p~~f~~l~g~~~~k~~i~~~l~~~~~~~~~~~~~g~~~~rg~LL~GPPGtGKTsla~aiA~~l~~-----~i~~l~~~~ 262 (431)
.-.+|++|+|.+.++.++.+-+..++..++.|..+++-+|||+|||||||||||++|+|+|..+.- .++.-+..+
T Consensus 260 ~~v~fd~vggl~~~i~~LKEmVl~PLlyPE~f~~~~itpPrgvL~~GppGTGkTl~araLa~~~s~~~~kisffmrkgaD 339 (1080)
T KOG0732|consen 260 SSVGFDSVGGLENYINQLKEMVLLPLLYPEFFDNFNITPPRGVLFHGPPGTGKTLMARALAAACSRGNRKISFFMRKGAD 339 (1080)
T ss_pred cccCccccccHHHHHHHHHHHHHhHhhhhhHhhhcccCCCcceeecCCCCCchhHHHHhhhhhhcccccccchhhhcCch
Confidence 346799999999999999999999999999999999999999999999999999999999998742 344433333
Q ss_pred c------CChHHHHHHHHHhhhc---------------------ccchhhHHHHHHHHhcCcccCCCCceEEEEecCCCC
Q 035603 263 V------ENNNELRSLLVDISSK---------------------KKKSNVTLSGLLNCIGGLWSTCGGERIIVFTTNHVD 315 (431)
Q Consensus 263 ~------~~~~~l~~l~~~~~~~---------------------~~~~~~~~s~lL~~ldg~~~~~~~~~ivI~TTN~~~ 315 (431)
. +.+..++-+|.++... .......++.||-.|||+.+. +.++||+|||+++
T Consensus 340 ~lskwvgEaERqlrllFeeA~k~qPSIIffdeIdGlapvrSskqEqih~SIvSTLLaLmdGldsR--gqVvvigATnRpd 417 (1080)
T KOG0732|consen 340 CLSKWVGEAERQLRLLFEEAQKTQPSIIFFDEIDGLAPVRSSKQEQIHASIVSTLLALMDGLDSR--GQVVVIGATNRPD 417 (1080)
T ss_pred hhccccCcHHHHHHHHHHHHhccCceEEeccccccccccccchHHHhhhhHHHHHHHhccCCCCC--CceEEEcccCCcc
Confidence 2 3456788888887765 233456789999999999765 4599999999999
Q ss_pred CCChhhhccCceeEEEEcCCCCHHHHHHHHHHhhchhcchhHH-HHHhHhcc-CCCCHHHHHHHhc
Q 035603 316 KLDPALIRRGRMDKHIEMPYCCFEAFKVLAKNYLEIESHELFH-EIGSLLGE-TDITPADVAENLM 379 (431)
Q Consensus 316 ~Ld~AllRpGRfd~~I~~~~p~~~~r~~i~~~~l~~~~~~~~~-~i~~l~~~-~~~s~adI~~~l~ 379 (431)
.+||||+||||||+.++||+|+.++|..|+..+-..-.+.... -+..+++. .||-+||++.+|-
T Consensus 418 a~dpaLRRPgrfdref~f~lp~~~ar~~Il~Ihtrkw~~~i~~~l~~~la~~t~gy~gaDlkaLCT 483 (1080)
T KOG0732|consen 418 AIDPALRRPGRFDREFYFPLPDVDARAKILDIHTRKWEPPISRELLLWLAEETSGYGGADLKALCT 483 (1080)
T ss_pred ccchhhcCCcccceeEeeeCCchHHHHHHHHHhccCCCCCCCHHHHHHHHHhccccchHHHHHHHH
Confidence 9999999999999999999999999999998887654443333 34556664 4999999987764
No 35
>KOG0741 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.91 E-value=8.1e-25 Score=220.30 Aligned_cols=189 Identities=20% Similarity=0.288 Sum_probs=143.4
Q ss_pred CCcccc--ccChhhHHHH-HHHHHHHHhCHHHHHHhCCCCCceeEEeCCCCCcHHHHHHHHHHHcCCC-eEEecccCc--
Q 035603 190 ATFDTL--AMASKKKEAI-KKDLIKFTEGKEYYAKIGKAWKRGYLLFGPPGTGKSTMIAAMANCLNYD-VYDLELTSV-- 263 (431)
Q Consensus 190 ~~f~~l--~g~~~~k~~i-~~~l~~~~~~~~~~~~~g~~~~rg~LL~GPPGtGKTsla~aiA~~l~~~-i~~l~~~~~-- 263 (431)
-.|+++ +|.+.--..| ...+..-.-.|+.-.++|+++-+|+|||||||||||.+||.|..-|+.. --.+|..++
T Consensus 216 f~Fe~mGIGGLd~EFs~IFRRAFAsRvFpp~vie~lGi~HVKGiLLyGPPGTGKTLiARqIGkMLNArePKIVNGPeIL~ 295 (744)
T KOG0741|consen 216 FNFESMGIGGLDKEFSDIFRRAFASRVFPPEVIEQLGIKHVKGILLYGPPGTGKTLIARQIGKMLNAREPKIVNGPEILN 295 (744)
T ss_pred CChhhcccccchHHHHHHHHHHHHhhcCCHHHHHHcCccceeeEEEECCCCCChhHHHHHHHHHhcCCCCcccCcHHHHH
Confidence 557775 3333222222 2222222336889999999999999999999999999999999999863 234455543
Q ss_pred ----CChHHHHHHHHHhhhc-------------------------------ccchhhHHHHHHHHhcCcccCCCCceEEE
Q 035603 264 ----ENNNELRSLLVDISSK-------------------------------KKKSNVTLSGLLNCIGGLWSTCGGERIIV 308 (431)
Q Consensus 264 ----~~~~~l~~l~~~~~~~-------------------------------~~~~~~~~s~lL~~ldg~~~~~~~~~ivI 308 (431)
+++++++++|.++... .+.....+++||..|||+..- .+++||
T Consensus 296 KYVGeSE~NvR~LFaDAEeE~r~~g~~SgLHIIIFDEiDAICKqRGS~~g~TGVhD~VVNQLLsKmDGVeqL--NNILVI 373 (744)
T KOG0741|consen 296 KYVGESEENVRKLFADAEEEQRRLGANSGLHIIIFDEIDAICKQRGSMAGSTGVHDTVVNQLLSKMDGVEQL--NNILVI 373 (744)
T ss_pred HhhcccHHHHHHHHHhHHHHHHhhCccCCceEEEehhhHHHHHhcCCCCCCCCccHHHHHHHHHhcccHHhh--hcEEEE
Confidence 5678899999887643 344577899999999999765 459999
Q ss_pred EecCCCCCCChhhhccCceeEEEEcCCCCHHHHHHHHHHhhchhcc----hhHHHHHhHhcc-CCCCHHHHHHHhcc
Q 035603 309 FTTNHVDKLDPALIRRGRMDKHIEMPYCCFEAFKVLAKNYLEIESH----ELFHEIGSLLGE-TDITPADVAENLMP 380 (431)
Q Consensus 309 ~TTN~~~~Ld~AllRpGRfd~~I~~~~p~~~~r~~i~~~~l~~~~~----~~~~~i~~l~~~-~~~s~adI~~~l~~ 380 (431)
+.||++|.||.||+|||||..++++++||...|.+|++.+...... ....++++++.. -+||+|||..++..
T Consensus 374 GMTNR~DlIDEALLRPGRlEVqmEIsLPDE~gRlQIl~IHT~rMre~~~l~~dVdl~elA~lTKNfSGAEleglVks 450 (744)
T KOG0741|consen 374 GMTNRKDLIDEALLRPGRLEVQMEISLPDEKGRLQILKIHTKRMRENNKLSADVDLKELAALTKNFSGAELEGLVKS 450 (744)
T ss_pred eccCchhhHHHHhcCCCceEEEEEEeCCCccCceEEEEhhhhhhhhcCCCCCCcCHHHHHHHhcCCchhHHHHHHHH
Confidence 9999999999999999999999999999999999999887653221 122345566553 39999999988753
No 36
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=99.91 E-value=1.1e-23 Score=231.27 Aligned_cols=189 Identities=25% Similarity=0.317 Sum_probs=156.3
Q ss_pred CCCccccccChhhHHHHHHHHHHHHhCHHHHHHhCCCCCceeEEeCCCCCcHHHHHHHHHHHcCCCeEEecccCcC----
Q 035603 189 PATFDTLAMASKKKEAIKKDLIKFTEGKEYYAKIGKAWKRGYLLFGPPGTGKSTMIAAMANCLNYDVYDLELTSVE---- 264 (431)
Q Consensus 189 p~~f~~l~g~~~~k~~i~~~l~~~~~~~~~~~~~g~~~~rg~LL~GPPGtGKTsla~aiA~~l~~~i~~l~~~~~~---- 264 (431)
..+|++|+|.+++++.|.+.+..++.+++.|..+|+.+++|+|||||||||||+++++||++++.+++.++...+.
T Consensus 174 ~~~~~di~G~~~~~~~l~~~i~~~~~~~~~~~~~gi~~~~giLL~GppGtGKT~laraia~~~~~~~i~i~~~~i~~~~~ 253 (733)
T TIGR01243 174 KVTYEDIGGLKEAKEKIREMVELPMKHPELFEHLGIEPPKGVLLYGPPGTGKTLLAKAVANEAGAYFISINGPEIMSKYY 253 (733)
T ss_pred CCCHHHhcCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCceEEEECCCCCChHHHHHHHHHHhCCeEEEEecHHHhcccc
Confidence 4789999999999999999999999999999999999999999999999999999999999999999999876542
Q ss_pred --ChHHHHHHHHHhhhc---------------------ccchhhHHHHHHHHhcCcccCCCCceEEEEecCCCCCCChhh
Q 035603 265 --NNNELRSLLVDISSK---------------------KKKSNVTLSGLLNCIGGLWSTCGGERIIVFTTNHVDKLDPAL 321 (431)
Q Consensus 265 --~~~~l~~l~~~~~~~---------------------~~~~~~~~s~lL~~ldg~~~~~~~~~ivI~TTN~~~~Ld~Al 321 (431)
....++.+|..+... .......++.|++.||++... ..++||+|||+++.||+++
T Consensus 254 g~~~~~l~~lf~~a~~~~p~il~iDEid~l~~~r~~~~~~~~~~~~~~Ll~~ld~l~~~--~~vivI~atn~~~~ld~al 331 (733)
T TIGR01243 254 GESEERLREIFKEAEENAPSIIFIDEIDAIAPKREEVTGEVEKRVVAQLLTLMDGLKGR--GRVIVIGATNRPDALDPAL 331 (733)
T ss_pred cHHHHHHHHHHHHHHhcCCcEEEeehhhhhcccccCCcchHHHHHHHHHHHHhhccccC--CCEEEEeecCChhhcCHHH
Confidence 235677788765433 111245788999999998543 4589999999999999999
Q ss_pred hccCceeEEEEcCCCCHHHHHHHHHHhhchhcchhHHHHHhHhc-cCCCCHHHHHHHhc
Q 035603 322 IRRGRMDKHIEMPYCCFEAFKVLAKNYLEIESHELFHEIGSLLG-ETDITPADVAENLM 379 (431)
Q Consensus 322 lRpGRfd~~I~~~~p~~~~r~~i~~~~l~~~~~~~~~~i~~l~~-~~~~s~adI~~~l~ 379 (431)
.||||||..|+++.|+.++|.+|++.+...........+..++. ..||+++|+..++.
T Consensus 332 ~r~gRfd~~i~i~~P~~~~R~~Il~~~~~~~~l~~d~~l~~la~~t~G~~gadl~~l~~ 390 (733)
T TIGR01243 332 RRPGRFDREIVIRVPDKRARKEILKVHTRNMPLAEDVDLDKLAEVTHGFVGADLAALAK 390 (733)
T ss_pred hCchhccEEEEeCCcCHHHHHHHHHHHhcCCCCccccCHHHHHHhCCCCCHHHHHHHHH
Confidence 99999999999999999999999998765432222223455555 34999999987654
No 37
>KOG0730 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.91 E-value=9.8e-24 Score=218.24 Aligned_cols=189 Identities=23% Similarity=0.282 Sum_probs=167.6
Q ss_pred CCCCccccccChhhHHHHHHHHHHHHhCHHHHHHhCCCCCceeEEeCCCCCcHHHHHHHHHHHcCCCeEEecccCc----
Q 035603 188 HPATFDTLAMASKKKEAIKKDLIKFTEGKEYYAKIGKAWKRGYLLFGPPGTGKSTMIAAMANCLNYDVYDLELTSV---- 263 (431)
Q Consensus 188 ~p~~f~~l~g~~~~k~~i~~~l~~~~~~~~~~~~~g~~~~rg~LL~GPPGtGKTsla~aiA~~l~~~i~~l~~~~~---- 263 (431)
++.+ ++++|.......+.+.+..++..+..|...|+++|+|+|+|||||||||.+++|+|++.+..++.++..++
T Consensus 180 ~~~~-~~~gg~~~~~~~i~e~v~~pl~~~~~~~s~g~~~prg~Ll~gppg~Gkt~l~~aVa~e~~a~~~~i~~peli~k~ 258 (693)
T KOG0730|consen 180 PEVG-DDIGGLKRQLSVIRELVELPLRHPALFKSIGIKPPRGLLLYGPPGTGKTFLVRAVANEYGAFLFLINGPELISKF 258 (693)
T ss_pred cccc-cccchhHHHHHHHHHHHHhhhcchhhhhhcCCCCCCCccccCCCCCChHHHHHHHHHHhCceeEecccHHHHHhc
Confidence 6777 89999999999999999999999999999999999999999999999999999999999999999998865
Q ss_pred --CChHHHHHHHHHhhhc---------------------ccchhhHHHHHHHHhcCcccCCCCceEEEEecCCCCCCChh
Q 035603 264 --ENNNELRSLLVDISSK---------------------KKKSNVTLSGLLNCIGGLWSTCGGERIIVFTTNHVDKLDPA 320 (431)
Q Consensus 264 --~~~~~l~~l~~~~~~~---------------------~~~~~~~~s~lL~~ldg~~~~~~~~~ivI~TTN~~~~Ld~A 320 (431)
++.+.+++.|.++... .....++.++|+..+||..+ ..++|||+|||+|+.|||+
T Consensus 259 ~gEte~~LR~~f~~a~k~~~psii~IdEld~l~p~r~~~~~~e~Rv~sqlltL~dg~~~--~~~vivl~atnrp~sld~a 336 (693)
T KOG0730|consen 259 PGETESNLRKAFAEALKFQVPSIIFIDELDALCPKREGADDVESRVVSQLLTLLDGLKP--DAKVIVLAATNRPDSLDPA 336 (693)
T ss_pred ccchHHHHHHHHHHHhccCCCeeEeHHhHhhhCCcccccchHHHHHHHHHHHHHhhCcC--cCcEEEEEecCCccccChh
Confidence 5678899999887654 11267889999999999964 4569999999999999999
Q ss_pred hhccCceeEEEEcCCCCHHHHHHHHHHhhchhcchhHHHHHhHhc-cCCCCHHHHHHHhcc
Q 035603 321 LIRRGRMDKHIEMPYCCFEAFKVLAKNYLEIESHELFHEIGSLLG-ETDITPADVAENLMP 380 (431)
Q Consensus 321 llRpGRfd~~I~~~~p~~~~r~~i~~~~l~~~~~~~~~~i~~l~~-~~~~s~adI~~~l~~ 380 (431)
+.| ||||..++++.|+..+|.+|++.+..........++..++. +.||++||+..+|..
T Consensus 337 lRR-gRfd~ev~IgiP~~~~RldIl~~l~k~~~~~~~~~l~~iA~~thGyvGaDL~~l~~e 396 (693)
T KOG0730|consen 337 LRR-GRFDREVEIGIPGSDGRLDILRVLTKKMNLLSDVDLEDIAVSTHGYVGADLAALCRE 396 (693)
T ss_pred hhc-CCCcceeeecCCCchhHHHHHHHHHHhcCCcchhhHHHHHHHccchhHHHHHHHHHH
Confidence 999 99999999999999999999999987766554566777777 459999999988764
No 38
>KOG0740 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.90 E-value=8.6e-24 Score=212.83 Aligned_cols=190 Identities=23% Similarity=0.284 Sum_probs=163.0
Q ss_pred CCCCccccccChhhHHHHHHHHHHHHhCHHHHHHhCCCCCceeEEeCCCCCcHHHHHHHHHHHcCCCeEEecccCcC---
Q 035603 188 HPATFDTLAMASKKKEAIKKDLIKFTEGKEYYAKIGKAWKRGYLLFGPPGTGKSTMIAAMANCLNYDVYDLELTSVE--- 264 (431)
Q Consensus 188 ~p~~f~~l~g~~~~k~~i~~~l~~~~~~~~~~~~~g~~~~rg~LL~GPPGtGKTsla~aiA~~l~~~i~~l~~~~~~--- 264 (431)
.+..|++++|++.+|+.+.+.+..++..++.|..+- ++.+|+||.||||||||+|++|||.+++..|+.++.+++.
T Consensus 148 ~~v~~~di~gl~~~k~~l~e~vi~p~lr~d~F~glr-~p~rglLLfGPpgtGKtmL~~aiAsE~~atff~iSassLtsK~ 226 (428)
T KOG0740|consen 148 RNVGWDDIAGLEDAKQSLKEAVILPLLRPDLFLGLR-EPVRGLLLFGPPGTGKTMLAKAIATESGATFFNISASSLTSKY 226 (428)
T ss_pred CcccccCCcchhhHHHHhhhhhhhcccchHhhhccc-cccchhheecCCCCchHHHHHHHHhhhcceEeeccHHHhhhhc
Confidence 457789999999999999999999999999998764 5568999999999999999999999999999999998872
Q ss_pred ---ChHHHHHHHHHhhhc---------------------ccchhhHHHHHHHHhcCcccCCCCceEEEEecCCCCCCChh
Q 035603 265 ---NNNELRSLLVDISSK---------------------KKKSNVTLSGLLNCIGGLWSTCGGERIIVFTTNHVDKLDPA 320 (431)
Q Consensus 265 ---~~~~l~~l~~~~~~~---------------------~~~~~~~~s~lL~~ldg~~~~~~~~~ivI~TTN~~~~Ld~A 320 (431)
++.-++.+|.-+... +..+.+...++|..++|..+...+.++||+|||+|+.+|.|
T Consensus 227 ~Ge~eK~vralf~vAr~~qPsvifidEidslls~Rs~~e~e~srr~ktefLiq~~~~~s~~~drvlvigaTN~P~e~Dea 306 (428)
T KOG0740|consen 227 VGESEKLVRALFKVARSLQPSVIFIDEIDSLLSKRSDNEHESSRRLKTEFLLQFDGKNSAPDDRVLVIGATNRPWELDEA 306 (428)
T ss_pred cChHHHHHHHHHHHHHhcCCeEEEechhHHHHhhcCCcccccchhhhhHHHhhhccccCCCCCeEEEEecCCCchHHHHH
Confidence 223456666444332 44566889999999999999888899999999999999999
Q ss_pred hhccCceeEEEEcCCCCHHHHHHHHHHhhchhcchh-HHHHHhHhc-cCCCCHHHHHHHhcc
Q 035603 321 LIRRGRMDKHIEMPYCCFEAFKVLAKNYLEIESHEL-FHEIGSLLG-ETDITPADVAENLMP 380 (431)
Q Consensus 321 llRpGRfd~~I~~~~p~~~~r~~i~~~~l~~~~~~~-~~~i~~l~~-~~~~s~adI~~~l~~ 380 (431)
++| ||...+++|.|+.+.|..+|++++....+.+ ..+++.+++ +.|||++||..+|..
T Consensus 307 ~~R--rf~kr~yiplPd~etr~~~~~~ll~~~~~~l~~~d~~~l~~~Tegysgsdi~~l~ke 366 (428)
T KOG0740|consen 307 ARR--RFVKRLYIPLPDYETRSLLWKQLLKEQPNGLSDLDISLLAKVTEGYSGSDITALCKE 366 (428)
T ss_pred HHH--HhhceeeecCCCHHHHHHHHHHHHHhCCCCccHHHHHHHHHHhcCcccccHHHHHHH
Confidence 999 9999999999999999999999998765544 356777777 449999999988875
No 39
>PF14363 AAA_assoc: Domain associated at C-terminal with AAA
Probab=99.79 E-value=2.8e-19 Score=147.26 Aligned_cols=83 Identities=39% Similarity=0.641 Sum_probs=76.5
Q ss_pred hchHHHHHHHHHHHHHhcc-ccCCceEEEEEeecCCCCCcchhHHHHHHHhcCCCCCCCCccceE-------------ec
Q 035603 26 HIPRQAWYFLEKHCHKLVS-LLNPYLEIAFYEFSSNNFLRNKAYSEIQSYLSGREETSLHASRFK-------------AD 91 (431)
Q Consensus 26 ~~p~~l~~~l~~~~~~l~~-~~~~~~ti~i~e~~~~~~~~~~~y~~~~~yls~~~~~~~~~~~l~-------------~~ 91 (431)
|+|++|+.++.+++++++. +++||+||+|+|+. |+++|++|+++++||++++ ++.+++|+ |+
T Consensus 1 ~~P~~lr~~~~~~~~~~~~~~~s~~~ti~I~E~~--g~~~N~ly~a~~~YL~s~~--s~~a~rL~~~~~~~~~~~~l~l~ 76 (98)
T PF14363_consen 1 LLPHELRSYLRSLLRRLFSSRFSPYLTIVIPEFD--GLSRNELYDAAQAYLSSKI--SPSARRLKASKSKNSKNLVLSLD 76 (98)
T ss_pred CCCHHHHHHHHHHHHHHHhccCCCcEEEEEEeCC--CccccHHHHHHHHHHhhcc--CcccceeeecccCCCCceEEecC
Confidence 6899999999999988765 99999999999995 6899999999999999999 88888887 68
Q ss_pred CCCceeeeecCeEEEEEEeec
Q 035603 92 DYEEVSDEYKGVRVWWVLGKK 112 (431)
Q Consensus 92 ~~~~~~d~f~g~~~~w~~~~~ 112 (431)
+||+|+|+|+|+++||..++.
T Consensus 77 ~~e~V~D~F~Gv~v~W~~~~~ 97 (98)
T PF14363_consen 77 DGEEVVDVFEGVKVWWSSVCT 97 (98)
T ss_pred CCCEEEEEECCEEEEEEEEcc
Confidence 999999999999999998864
No 40
>KOG0744 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.78 E-value=2e-18 Score=165.80 Aligned_cols=155 Identities=24% Similarity=0.282 Sum_probs=119.1
Q ss_pred ccccccChhhHHHHHHHHHHHHhCHHHHH-HhCCCCCceeEEeCCCCCcHHHHHHHHHHHcCC---------CeEEeccc
Q 035603 192 FDTLAMASKKKEAIKKDLIKFTEGKEYYA-KIGKAWKRGYLLFGPPGTGKSTMIAAMANCLNY---------DVYDLELT 261 (431)
Q Consensus 192 f~~l~g~~~~k~~i~~~l~~~~~~~~~~~-~~g~~~~rg~LL~GPPGtGKTsla~aiA~~l~~---------~i~~l~~~ 261 (431)
|++|+.+.++|+.+...+..-+.-.+.-. .-=+.|.|-+|||||||||||||++|+|+.|.. .+++++..
T Consensus 141 WEsLiyds~lK~~ll~Ya~s~l~fsek~vntnlIt~NRliLlhGPPGTGKTSLCKaLaQkLSIR~~~~y~~~~liEinsh 220 (423)
T KOG0744|consen 141 WESLIYDSNLKERLLSYAASALLFSEKKVNTNLITWNRLILLHGPPGTGKTSLCKALAQKLSIRTNDRYYKGQLIEINSH 220 (423)
T ss_pred HHHHhhcccHHHHHHHHHHHHHHHHhcCCCCceeeeeeEEEEeCCCCCChhHHHHHHHHhheeeecCccccceEEEEehh
Confidence 67888899999999888766554211111 112677899999999999999999999998854 35566665
Q ss_pred Cc------CChHHHHHHHHHhhhc------------------------------ccchhhHHHHHHHHhcCcccCCCCce
Q 035603 262 SV------ENNNELRSLLVDISSK------------------------------KKKSNVTLSGLLNCIGGLWSTCGGER 305 (431)
Q Consensus 262 ~~------~~~~~l~~l~~~~~~~------------------------------~~~~~~~~s~lL~~ldg~~~~~~~~~ 305 (431)
++ ++..-+.++|.+.... ..+.-+.++.+|..||.+...+. +
T Consensus 221 sLFSKWFsESgKlV~kmF~kI~ELv~d~~~lVfvLIDEVESLa~aR~s~~S~~EpsDaIRvVNalLTQlDrlK~~~N--v 298 (423)
T KOG0744|consen 221 SLFSKWFSESGKLVAKMFQKIQELVEDRGNLVFVLIDEVESLAAARTSASSRNEPSDAIRVVNALLTQLDRLKRYPN--V 298 (423)
T ss_pred HHHHHHHhhhhhHHHHHHHHHHHHHhCCCcEEEEEeHHHHHHHHHHHhhhcCCCCchHHHHHHHHHHHHHHhccCCC--E
Confidence 54 3334455555443321 23445789999999999976554 9
Q ss_pred EEEEecCCCCCCChhhhccCceeEEEEcCCCCHHHHHHHHHHhhc
Q 035603 306 IIVFTTNHVDKLDPALIRRGRMDKHIEMPYCCFEAFKVLAKNYLE 350 (431)
Q Consensus 306 ivI~TTN~~~~Ld~AllRpGRfd~~I~~~~p~~~~r~~i~~~~l~ 350 (431)
++.+|+|-.+.||.|+.. |-|.+.++++|+..++..|++..+.
T Consensus 299 liL~TSNl~~siD~AfVD--RADi~~yVG~Pt~~ai~~Ilkscie 341 (423)
T KOG0744|consen 299 LILATSNLTDSIDVAFVD--RADIVFYVGPPTAEAIYEILKSCIE 341 (423)
T ss_pred EEEeccchHHHHHHHhhh--HhhheeecCCccHHHHHHHHHHHHH
Confidence 999999999999999999 9999999999999999999988764
No 41
>KOG0742 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.76 E-value=1.3e-17 Score=164.35 Aligned_cols=180 Identities=20% Similarity=0.224 Sum_probs=133.1
Q ss_pred CCccccccChhhHHHHHHHHHHHHhCHHHHHHhCCCCCceeEEeCCCCCcHHHHHHHHHHHcCCCeEEecccCcC-----
Q 035603 190 ATFDTLAMASKKKEAIKKDLIKFTEGKEYYAKIGKAWKRGYLLFGPPGTGKSTMIAAMANCLNYDVYDLELTSVE----- 264 (431)
Q Consensus 190 ~~f~~l~g~~~~k~~i~~~l~~~~~~~~~~~~~g~~~~rg~LL~GPPGtGKTsla~aiA~~l~~~i~~l~~~~~~----- 264 (431)
.+|++|++.+.++..|.+....--+.+ ....+-|.+|||||||||||++|+-||...|+++..+...++.
T Consensus 352 ~pl~~ViL~psLe~Rie~lA~aTaNTK-----~h~apfRNilfyGPPGTGKTm~ArelAr~SGlDYA~mTGGDVAPlG~q 426 (630)
T KOG0742|consen 352 DPLEGVILHPSLEKRIEDLAIATANTK-----KHQAPFRNILFYGPPGTGKTMFARELARHSGLDYAIMTGGDVAPLGAQ 426 (630)
T ss_pred CCcCCeecCHHHHHHHHHHHHHhcccc-----cccchhhheeeeCCCCCCchHHHHHHHhhcCCceehhcCCCccccchH
Confidence 459999999999999876554443322 2334557899999999999999999999999999888877763
Q ss_pred ChHHHHHHHHHhhhc-----------------------ccchhhHHHHHHHHhcCcccCCCCceEEEEecCCCCCCChhh
Q 035603 265 NNNELRSLLVDISSK-----------------------KKKSNVTLSGLLNCIGGLWSTCGGERIIVFTTNHVDKLDPAL 321 (431)
Q Consensus 265 ~~~~l~~l~~~~~~~-----------------------~~~~~~~~s~lL~~ldg~~~~~~~~~ivI~TTN~~~~Ld~Al 321 (431)
....+.++|..+..+ ....+..++.||=-.. - .+..++++.+||+|+.||.|+
T Consensus 427 aVTkiH~lFDWakkS~rGLllFIDEADAFLceRnktymSEaqRsaLNAlLfRTG-d---qSrdivLvlAtNrpgdlDsAV 502 (630)
T KOG0742|consen 427 AVTKIHKLFDWAKKSRRGLLLFIDEADAFLCERNKTYMSEAQRSALNALLFRTG-D---QSRDIVLVLATNRPGDLDSAV 502 (630)
T ss_pred HHHHHHHHHHHHhhcccceEEEehhhHHHHHHhchhhhcHHHHHHHHHHHHHhc-c---cccceEEEeccCCccchhHHH
Confidence 335678888877655 2223344555543322 2 234589999999999999999
Q ss_pred hccCceeEEEEcCCCCHHHHHHHHHHhhchhc------c---------------------hhHHHHHhHhc-cCCCCHHH
Q 035603 322 IRRGRMDKHIEMPYCCFEAFKVLAKNYLEIES------H---------------------ELFHEIGSLLG-ETDITPAD 373 (431)
Q Consensus 322 lRpGRfd~~I~~~~p~~~~r~~i~~~~l~~~~------~---------------------~~~~~i~~l~~-~~~~s~ad 373 (431)
-. |||..|+||+|..++|..|+..|+...- . .....+.+.+. +.|||+.+
T Consensus 503 ~D--Ride~veFpLPGeEERfkll~lYlnkyi~~~~~~~~~~~~~~lfkk~sQ~i~l~~~~t~~~~~EaAkkTeGfSGRE 580 (630)
T KOG0742|consen 503 ND--RIDEVVEFPLPGEEERFKLLNLYLNKYILKPATSGKPGKWSHLFKKESQRIKLAGFDTGRKCSEAAKKTEGFSGRE 580 (630)
T ss_pred Hh--hhhheeecCCCChHHHHHHHHHHHHHHhcCcCCCCCCchhhHHHhhhhheeeeccchHHHHHHHHHHhccCCcHHH
Confidence 99 9999999999999999999998876210 0 01122444454 45999999
Q ss_pred HHHHhcc
Q 035603 374 VAENLMP 380 (431)
Q Consensus 374 I~~~l~~ 380 (431)
|+.++..
T Consensus 581 iakLva~ 587 (630)
T KOG0742|consen 581 IAKLVAS 587 (630)
T ss_pred HHHHHHH
Confidence 9988764
No 42
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=99.68 E-value=1.2e-16 Score=137.19 Aligned_cols=104 Identities=33% Similarity=0.565 Sum_probs=84.4
Q ss_pred eEEeCCCCCcHHHHHHHHHHHcCCCeEEecccCcC------ChHHHHHHHHHhhhc----------------------cc
Q 035603 230 YLLFGPPGTGKSTMIAAMANCLNYDVYDLELTSVE------NNNELRSLLVDISSK----------------------KK 281 (431)
Q Consensus 230 ~LL~GPPGtGKTsla~aiA~~l~~~i~~l~~~~~~------~~~~l~~l~~~~~~~----------------------~~ 281 (431)
+|||||||||||++++++|+.++.+++.+++..+. ....+..+|..+... ..
T Consensus 1 ill~G~~G~GKT~l~~~la~~l~~~~~~i~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~vl~iDe~d~l~~~~~~~~~~ 80 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLARALAQYLGFPFIEIDGSELISSYAGDSEQKIRDFFKKAKKSAKPCVLFIDEIDKLFPKSQPSSSS 80 (132)
T ss_dssp EEEESSTTSSHHHHHHHHHHHTTSEEEEEETTHHHTSSTTHHHHHHHHHHHHHHHTSTSEEEEEETGGGTSHHCSTSSSH
T ss_pred CEEECcCCCCeeHHHHHHHhhcccccccccccccccccccccccccccccccccccccceeeeeccchhccccccccccc
Confidence 68999999999999999999999999999988764 335677777765322 11
Q ss_pred chhhHHHHHHHHhcCcccCCCCceEEEEecCCCCCCChhhhccCceeEEEEcCC
Q 035603 282 KSNVTLSGLLNCIGGLWSTCGGERIIVFTTNHVDKLDPALIRRGRMDKHIEMPY 335 (431)
Q Consensus 282 ~~~~~~s~lL~~ldg~~~~~~~~~ivI~TTN~~~~Ld~AllRpGRfd~~I~~~~ 335 (431)
.....+..|++.++..... +.+++||+|||.++.+||+++| |||+..|++|.
T Consensus 81 ~~~~~~~~L~~~l~~~~~~-~~~~~vI~ttn~~~~i~~~l~~-~rf~~~i~~~~ 132 (132)
T PF00004_consen 81 FEQRLLNQLLSLLDNPSSK-NSRVIVIATTNSPDKIDPALLR-SRFDRRIEFPL 132 (132)
T ss_dssp HHHHHHHHHHHHHHTTTTT-SSSEEEEEEESSGGGSCHHHHS-TTSEEEEEE-S
T ss_pred ccccccceeeecccccccc-cccceeEEeeCChhhCCHhHHh-CCCcEEEEcCC
Confidence 2345688999999988653 3459999999999999999998 99999999984
No 43
>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B.
Probab=99.67 E-value=3.1e-15 Score=139.25 Aligned_cols=176 Identities=17% Similarity=0.197 Sum_probs=113.5
Q ss_pred cCCCCccccccChhhHHHHHHHHHHHHhCHHHHHHhCCCCCceeEEeCCCCCcHHHHHHHHHHHcCCCeEEecccCcCCh
Q 035603 187 EHPATFDTLAMASKKKEAIKKDLIKFTEGKEYYAKIGKAWKRGYLLFGPPGTGKSTMIAAMANCLNYDVYDLELTSVENN 266 (431)
Q Consensus 187 ~~p~~f~~l~g~~~~k~~i~~~l~~~~~~~~~~~~~g~~~~rg~LL~GPPGtGKTsla~aiA~~l~~~i~~l~~~~~~~~ 266 (431)
=.|.+|++++|++++++.+.-.+....... ..-..+|||||||+||||||+.||++++.++..++...+...
T Consensus 18 lRP~~L~efiGQ~~l~~~l~i~i~aa~~r~--------~~l~h~lf~GPPG~GKTTLA~IIA~e~~~~~~~~sg~~i~k~ 89 (233)
T PF05496_consen 18 LRPKSLDEFIGQEHLKGNLKILIRAAKKRG--------EALDHMLFYGPPGLGKTTLARIIANELGVNFKITSGPAIEKA 89 (233)
T ss_dssp TS-SSCCCS-S-HHHHHHHHHHHHHHHCTT--------S---EEEEESSTTSSHHHHHHHHHHHCT--EEEEECCC--SC
T ss_pred cCCCCHHHccCcHHHHhhhHHHHHHHHhcC--------CCcceEEEECCCccchhHHHHHHHhccCCCeEeccchhhhhH
Confidence 368999999999999988755444333221 122479999999999999999999999999999998888777
Q ss_pred HHHHHHHHHhhhc--------ccchhhHHHHHHHHhcCccc-----CC-C--------CceEEEEecCCCCCCChhhhcc
Q 035603 267 NELRSLLVDISSK--------KKKSNVTLSGLLNCIGGLWS-----TC-G--------GERIIVFTTNHVDKLDPALIRR 324 (431)
Q Consensus 267 ~~l~~l~~~~~~~--------~~~~~~~~s~lL~~ldg~~~-----~~-~--------~~~ivI~TTN~~~~Ld~AllRp 324 (431)
.++..++...... +...+.....|+..|+...- .. + ...-+|++|++...|.+.|..
T Consensus 90 ~dl~~il~~l~~~~ILFIDEIHRlnk~~qe~LlpamEd~~idiiiG~g~~ar~~~~~l~~FTligATTr~g~ls~pLrd- 168 (233)
T PF05496_consen 90 GDLAAILTNLKEGDILFIDEIHRLNKAQQEILLPAMEDGKIDIIIGKGPNARSIRINLPPFTLIGATTRAGLLSSPLRD- 168 (233)
T ss_dssp HHHHHHHHT--TT-EEEECTCCC--HHHHHHHHHHHHCSEEEEEBSSSSS-BEEEEE----EEEEEESSGCCTSHCCCT-
T ss_pred HHHHHHHHhcCCCcEEEEechhhccHHHHHHHHHHhccCeEEEEeccccccceeeccCCCceEeeeeccccccchhHHh-
Confidence 8888887765544 44556666778888764321 11 1 135689999999999999988
Q ss_pred CceeEEEEcCCCCHHHHHHHHHHhhchhcchhHH-HHHhHhccCCCCHH
Q 035603 325 GRMDKHIEMPYCCFEAFKVLAKNYLEIESHELFH-EIGSLLGETDITPA 372 (431)
Q Consensus 325 GRfd~~I~~~~p~~~~r~~i~~~~l~~~~~~~~~-~i~~l~~~~~~s~a 372 (431)
||....++.+.+.++...|+++.......+..+ ....++..+.=||.
T Consensus 169 -RFgi~~~l~~Y~~~el~~Iv~r~a~~l~i~i~~~~~~~Ia~rsrGtPR 216 (233)
T PF05496_consen 169 -RFGIVLRLEFYSEEELAKIVKRSARILNIEIDEDAAEEIARRSRGTPR 216 (233)
T ss_dssp -TSSEEEE----THHHHHHHHHHCCHCTT-EE-HHHHHHHHHCTTTSHH
T ss_pred -hcceecchhcCCHHHHHHHHHHHHHHhCCCcCHHHHHHHHHhcCCChH
Confidence 999999999999999999998765544333322 23344444444444
No 44
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=99.62 E-value=3.2e-14 Score=137.84 Aligned_cols=154 Identities=16% Similarity=0.226 Sum_probs=108.6
Q ss_pred ccccccChhhHHHHHHHHHHHHhCHHHHHHhCCCC---CceeEEeCCCCCcHHHHHHHHHHHc---C----CCeEEeccc
Q 035603 192 FDTLAMASKKKEAIKKDLIKFTEGKEYYAKIGKAW---KRGYLLFGPPGTGKSTMIAAMANCL---N----YDVYDLELT 261 (431)
Q Consensus 192 f~~l~g~~~~k~~i~~~l~~~~~~~~~~~~~g~~~---~rg~LL~GPPGtGKTsla~aiA~~l---~----~~i~~l~~~ 261 (431)
+++++|.+++|+.|.+.+..... .....+.|... ..++||+||||||||++|+++|+.+ + .+++.++.+
T Consensus 5 l~~~~Gl~~vk~~i~~~~~~~~~-~~~~~~~g~~~~~~~~~vll~GppGtGKTtlA~~ia~~l~~~~~~~~~~~v~~~~~ 83 (261)
T TIGR02881 5 LSRMVGLDEVKALIKEIYAWIQI-NEKRKEEGLKTSKQVLHMIFKGNPGTGKTTVARILGKLFKEMNVLSKGHLIEVERA 83 (261)
T ss_pred HHHhcChHHHHHHHHHHHHHHHH-HHHHHHcCCCCCCCcceEEEEcCCCCCHHHHHHHHHHHHHhcCcccCCceEEecHH
Confidence 57899999999999886655443 35555667653 3468999999999999999999875 2 256666655
Q ss_pred CcC------ChHHHHHHHHHhhhc----cc-----------chhhHHHHHHHHhcCcccCCCCceEEEEecCCCC-----
Q 035603 262 SVE------NNNELRSLLVDISSK----KK-----------KSNVTLSGLLNCIGGLWSTCGGERIIVFTTNHVD----- 315 (431)
Q Consensus 262 ~~~------~~~~l~~l~~~~~~~----~~-----------~~~~~~s~lL~~ldg~~~~~~~~~ivI~TTN~~~----- 315 (431)
++. ....+.++|..+... ++ .....+..|++.++.. ...+++|++++..+
T Consensus 84 ~l~~~~~g~~~~~~~~~~~~a~~~VL~IDE~~~L~~~~~~~~~~~~i~~Ll~~~e~~----~~~~~vila~~~~~~~~~~ 159 (261)
T TIGR02881 84 DLVGEYIGHTAQKTREVIKKALGGVLFIDEAYSLARGGEKDFGKEAIDTLVKGMEDN----RNEFVLILAGYSDEMDYFL 159 (261)
T ss_pred HhhhhhccchHHHHHHHHHhccCCEEEEechhhhccCCccchHHHHHHHHHHHHhcc----CCCEEEEecCCcchhHHHH
Confidence 442 234556666554433 11 1234567788888754 23356666654332
Q ss_pred CCChhhhccCceeEEEEcCCCCHHHHHHHHHHhhchh
Q 035603 316 KLDPALIRRGRMDKHIEMPYCCFEAFKVLAKNYLEIE 352 (431)
Q Consensus 316 ~Ld~AllRpGRfd~~I~~~~p~~~~r~~i~~~~l~~~ 352 (431)
.++|+|.+ ||+.+|+||.++.+++..|++.++...
T Consensus 160 ~~~p~L~s--Rf~~~i~f~~~~~~el~~Il~~~~~~~ 194 (261)
T TIGR02881 160 SLNPGLRS--RFPISIDFPDYTVEELMEIAERMVKER 194 (261)
T ss_pred hcChHHHh--ccceEEEECCCCHHHHHHHHHHHHHHc
Confidence 47899999 999999999999999999999988643
No 45
>CHL00181 cbbX CbbX; Provisional
Probab=99.62 E-value=2.2e-14 Score=140.72 Aligned_cols=153 Identities=20% Similarity=0.287 Sum_probs=111.0
Q ss_pred cccccChhhHHHHHHHHHHHHhCHHHHHHhCCCCCc-e--eEEeCCCCCcHHHHHHHHHHHcC---C----CeEEecccC
Q 035603 193 DTLAMASKKKEAIKKDLIKFTEGKEYYAKIGKAWKR-G--YLLFGPPGTGKSTMIAAMANCLN---Y----DVYDLELTS 262 (431)
Q Consensus 193 ~~l~g~~~~k~~i~~~l~~~~~~~~~~~~~g~~~~r-g--~LL~GPPGtGKTsla~aiA~~l~---~----~i~~l~~~~ 262 (431)
++++|.+++|++|.+.+.. +..+..+.+.|.+.+. | +||+||||||||++|+++|..+. + +++.++.++
T Consensus 23 ~~l~Gl~~vK~~i~e~~~~-~~~~~~~~~~g~~~~~~~~~ill~G~pGtGKT~lAr~la~~~~~~g~~~~~~~~~v~~~~ 101 (287)
T CHL00181 23 EELVGLAPVKTRIREIAAL-LLIDRLRKNLGLTSSNPGLHMSFTGSPGTGKTTVALKMADILYKLGYIKKGHLLTVTRDD 101 (287)
T ss_pred HhcCCcHHHHHHHHHHHHH-HHHHHHHHHcCCCCCCCCceEEEECCCCCCHHHHHHHHHHHHHHcCCCCCCceEEecHHH
Confidence 4789999999999886644 5556777888876653 4 79999999999999999998752 2 467776554
Q ss_pred c------CChHHHHHHHHHhhhc----c------------cchhhHHHHHHHHhcCcccCCCCceEEEEecCCCC-----
Q 035603 263 V------ENNNELRSLLVDISSK----K------------KKSNVTLSGLLNCIGGLWSTCGGERIIVFTTNHVD----- 315 (431)
Q Consensus 263 ~------~~~~~l~~l~~~~~~~----~------------~~~~~~~s~lL~~ldg~~~~~~~~~ivI~TTN~~~----- 315 (431)
+ .+...+..++..+... + .........|+..|+.. .++++||++++...
T Consensus 102 l~~~~~g~~~~~~~~~l~~a~ggVLfIDE~~~l~~~~~~~~~~~e~~~~L~~~me~~----~~~~~vI~ag~~~~~~~~~ 177 (287)
T CHL00181 102 LVGQYIGHTAPKTKEVLKKAMGGVLFIDEAYYLYKPDNERDYGSEAIEILLQVMENQ----RDDLVVIFAGYKDRMDKFY 177 (287)
T ss_pred HHHHHhccchHHHHHHHHHccCCEEEEEccchhccCCCccchHHHHHHHHHHHHhcC----CCCEEEEEeCCcHHHHHHH
Confidence 3 1223345555544332 0 12455677888888743 24477777776322
Q ss_pred CCChhhhccCceeEEEEcCCCCHHHHHHHHHHhhchh
Q 035603 316 KLDPALIRRGRMDKHIEMPYCCFEAFKVLAKNYLEIE 352 (431)
Q Consensus 316 ~Ld~AllRpGRfd~~I~~~~p~~~~r~~i~~~~l~~~ 352 (431)
.++|+|.+ ||+.+|+|+.++.+++.+|+..++...
T Consensus 178 ~~np~L~s--R~~~~i~F~~~t~~el~~I~~~~l~~~ 212 (287)
T CHL00181 178 ESNPGLSS--RIANHVDFPDYTPEELLQIAKIMLEEQ 212 (287)
T ss_pred hcCHHHHH--hCCceEEcCCcCHHHHHHHHHHHHHHh
Confidence 35799999 999999999999999999999998654
No 46
>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed
Probab=99.61 E-value=1.5e-14 Score=144.61 Aligned_cols=181 Identities=19% Similarity=0.211 Sum_probs=124.3
Q ss_pred CCCCccccccChhhHHHHHHHHHHHHhCHHHHHHhCCCCCceeEEeCCCCCcHHHHHHHHHHHcCCCeEEecccCcCChH
Q 035603 188 HPATFDTLAMASKKKEAIKKDLIKFTEGKEYYAKIGKAWKRGYLLFGPPGTGKSTMIAAMANCLNYDVYDLELTSVENNN 267 (431)
Q Consensus 188 ~p~~f~~l~g~~~~k~~i~~~l~~~~~~~~~~~~~g~~~~rg~LL~GPPGtGKTsla~aiA~~l~~~i~~l~~~~~~~~~ 267 (431)
.|.+|++++|.++.++.+...+...... + ..++++|||||||||||++|+++|++++.++...+...+....
T Consensus 20 rP~~~~~~vG~~~~~~~l~~~l~~~~~~-------~-~~~~~~ll~GppG~GKT~la~~ia~~l~~~~~~~~~~~~~~~~ 91 (328)
T PRK00080 20 RPKSLDEFIGQEKVKENLKIFIEAAKKR-------G-EALDHVLLYGPPGLGKTTLANIIANEMGVNIRITSGPALEKPG 91 (328)
T ss_pred CcCCHHHhcCcHHHHHHHHHHHHHHHhc-------C-CCCCcEEEECCCCccHHHHHHHHHHHhCCCeEEEecccccChH
Confidence 5789999999999999887666543321 1 2356899999999999999999999999998887776666666
Q ss_pred HHHHHHHHhhhc--------ccchhhHHHHHHHHhcCccc-----C---------CCCceEEEEecCCCCCCChhhhccC
Q 035603 268 ELRSLLVDISSK--------KKKSNVTLSGLLNCIGGLWS-----T---------CGGERIIVFTTNHVDKLDPALIRRG 325 (431)
Q Consensus 268 ~l~~l~~~~~~~--------~~~~~~~~s~lL~~ldg~~~-----~---------~~~~~ivI~TTN~~~~Ld~AllRpG 325 (431)
.+..++...... +.........|.+.++.... . .-....+|++||++..++++|.+
T Consensus 92 ~l~~~l~~l~~~~vl~IDEi~~l~~~~~e~l~~~~e~~~~~~~l~~~~~~~~~~~~l~~~~li~at~~~~~l~~~L~s-- 169 (328)
T PRK00080 92 DLAAILTNLEEGDVLFIDEIHRLSPVVEEILYPAMEDFRLDIMIGKGPAARSIRLDLPPFTLIGATTRAGLLTSPLRD-- 169 (328)
T ss_pred HHHHHHHhcccCCEEEEecHhhcchHHHHHHHHHHHhcceeeeeccCccccceeecCCCceEEeecCCcccCCHHHHH--
Confidence 676666544322 11112222334444442210 0 01236789999999999999988
Q ss_pred ceeEEEEcCCCCHHHHHHHHHHhhchhcchhH-HHHHhHhccCCCCHHHHHHHh
Q 035603 326 RMDKHIEMPYCCFEAFKVLAKNYLEIESHELF-HEIGSLLGETDITPADVAENL 378 (431)
Q Consensus 326 Rfd~~I~~~~p~~~~r~~i~~~~l~~~~~~~~-~~i~~l~~~~~~s~adI~~~l 378 (431)
||...+++++++.+++.++++........... +.+..++...+-+|..+...+
T Consensus 170 Rf~~~~~l~~~~~~e~~~il~~~~~~~~~~~~~~~~~~ia~~~~G~pR~a~~~l 223 (328)
T PRK00080 170 RFGIVQRLEFYTVEELEKIVKRSARILGVEIDEEGALEIARRSRGTPRIANRLL 223 (328)
T ss_pred hcCeeeecCCCCHHHHHHHHHHHHHHcCCCcCHHHHHHHHHHcCCCchHHHHHH
Confidence 99999999999999999999987764433222 234455554444555554444
No 47
>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX. Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.
Probab=99.61 E-value=3.9e-14 Score=138.84 Aligned_cols=152 Identities=17% Similarity=0.222 Sum_probs=112.7
Q ss_pred ccccChhhHHHHHHHHHHHHhCHHHHHHhCCCC---CceeEEeCCCCCcHHHHHHHHHHHcC-------CCeEEecccCc
Q 035603 194 TLAMASKKKEAIKKDLIKFTEGKEYYAKIGKAW---KRGYLLFGPPGTGKSTMIAAMANCLN-------YDVYDLELTSV 263 (431)
Q Consensus 194 ~l~g~~~~k~~i~~~l~~~~~~~~~~~~~g~~~---~rg~LL~GPPGtGKTsla~aiA~~l~-------~~i~~l~~~~~ 263 (431)
.++|.+++|++|.+.+.. +..+..+.+.|++. +.++||+||||||||++|+++|..+. -+++.++..++
T Consensus 23 ~l~Gl~~vk~~i~e~~~~-~~~~~~r~~~g~~~~~~~~~vll~G~pGTGKT~lA~~ia~~l~~~g~~~~~~~v~v~~~~l 101 (284)
T TIGR02880 23 ELIGLKPVKTRIREIAAL-LLVERLRQRLGLASAAPTLHMSFTGNPGTGKTTVALRMAQILHRLGYVRKGHLVSVTRDDL 101 (284)
T ss_pred hccCHHHHHHHHHHHHHH-HHHHHHHHHhCCCcCCCCceEEEEcCCCCCHHHHHHHHHHHHHHcCCcccceEEEecHHHH
Confidence 689999999999875554 66777888889764 34899999999999999999998763 25777775443
Q ss_pred ------CChHHHHHHHHHhhhc----c------------cchhhHHHHHHHHhcCcccCCCCceEEEEecCCC--C---C
Q 035603 264 ------ENNNELRSLLVDISSK----K------------KKSNVTLSGLLNCIGGLWSTCGGERIIVFTTNHV--D---K 316 (431)
Q Consensus 264 ------~~~~~l~~l~~~~~~~----~------------~~~~~~~s~lL~~ldg~~~~~~~~~ivI~TTN~~--~---~ 316 (431)
.+...+..+|..+.+. + .........|++.|+.. ..+++||++++.. + .
T Consensus 102 ~~~~~g~~~~~~~~~~~~a~~gvL~iDEi~~L~~~~~~~~~~~~~~~~Ll~~le~~----~~~~~vI~a~~~~~~~~~~~ 177 (284)
T TIGR02880 102 VGQYIGHTAPKTKEILKRAMGGVLFIDEAYYLYRPDNERDYGQEAIEILLQVMENQ----RDDLVVILAGYKDRMDSFFE 177 (284)
T ss_pred hHhhcccchHHHHHHHHHccCcEEEEechhhhccCCCccchHHHHHHHHHHHHhcC----CCCEEEEEeCCcHHHHHHHh
Confidence 1234455666654333 1 12345567888888743 2457777776542 3 3
Q ss_pred CChhhhccCceeEEEEcCCCCHHHHHHHHHHhhchh
Q 035603 317 LDPALIRRGRMDKHIEMPYCCFEAFKVLAKNYLEIE 352 (431)
Q Consensus 317 Ld~AllRpGRfd~~I~~~~p~~~~r~~i~~~~l~~~ 352 (431)
++|+|.+ ||+.+|+||.++.+++..|+++++...
T Consensus 178 ~np~L~s--R~~~~i~fp~l~~edl~~I~~~~l~~~ 211 (284)
T TIGR02880 178 SNPGFSS--RVAHHVDFPDYSEAELLVIAGLMLKEQ 211 (284)
T ss_pred hCHHHHh--hCCcEEEeCCcCHHHHHHHHHHHHHHh
Confidence 5899999 999999999999999999999998653
No 48
>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.
Probab=99.58 E-value=4.6e-14 Score=139.48 Aligned_cols=175 Identities=16% Similarity=0.157 Sum_probs=115.8
Q ss_pred CccccccChhhHHHHHHHHHHHHhCHHHHHHhCCCCCceeEEeCCCCCcHHHHHHHHHHHcCCCeEEecccCcCChHHHH
Q 035603 191 TFDTLAMASKKKEAIKKDLIKFTEGKEYYAKIGKAWKRGYLLFGPPGTGKSTMIAAMANCLNYDVYDLELTSVENNNELR 270 (431)
Q Consensus 191 ~f~~l~g~~~~k~~i~~~l~~~~~~~~~~~~~g~~~~rg~LL~GPPGtGKTsla~aiA~~l~~~i~~l~~~~~~~~~~l~ 270 (431)
+|++++|.+++++.|...+......+ ..+.+++||||||||||++++++|++++.++..++.+.......+.
T Consensus 2 ~~~~~iG~~~~~~~l~~~l~~~~~~~--------~~~~~~ll~Gp~G~GKT~la~~ia~~~~~~~~~~~~~~~~~~~~l~ 73 (305)
T TIGR00635 2 LLAEFIGQEKVKEQLQLFIEAAKMRQ--------EALDHLLLYGPPGLGKTTLAHIIANEMGVNLKITSGPALEKPGDLA 73 (305)
T ss_pred CHHHHcCHHHHHHHHHHHHHHHHhcC--------CCCCeEEEECCCCCCHHHHHHHHHHHhCCCEEEeccchhcCchhHH
Confidence 68999999999999877665443321 2345799999999999999999999999988777665554444555
Q ss_pred HHHHHhhhc--------ccchhhHHHHHHHHhcCccc--------------CCCCceEEEEecCCCCCCChhhhccCcee
Q 035603 271 SLLVDISSK--------KKKSNVTLSGLLNCIGGLWS--------------TCGGERIIVFTTNHVDKLDPALIRRGRMD 328 (431)
Q Consensus 271 ~l~~~~~~~--------~~~~~~~~s~lL~~ldg~~~--------------~~~~~~ivI~TTN~~~~Ld~AllRpGRfd 328 (431)
..+...... +.........|++.++.... .......+|++||++..+++++.+ ||.
T Consensus 74 ~~l~~~~~~~vl~iDEi~~l~~~~~e~l~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~li~~t~~~~~l~~~l~s--R~~ 151 (305)
T TIGR00635 74 AILTNLEEGDVLFIDEIHRLSPAVEELLYPAMEDFRLDIVIGKGPSARSVRLDLPPFTLVGATTRAGMLTSPLRD--RFG 151 (305)
T ss_pred HHHHhcccCCEEEEehHhhhCHHHHHHhhHHHhhhheeeeeccCccccceeecCCCeEEEEecCCccccCHHHHh--hcc
Confidence 544332221 11122233345555442210 011237899999999999999998 999
Q ss_pred EEEEcCCCCHHHHHHHHHHhhchhcchhH-HHHHhHhccCCCCHHHHH
Q 035603 329 KHIEMPYCCFEAFKVLAKNYLEIESHELF-HEIGSLLGETDITPADVA 375 (431)
Q Consensus 329 ~~I~~~~p~~~~r~~i~~~~l~~~~~~~~-~~i~~l~~~~~~s~adI~ 375 (431)
..+.+++++.++..++++........... +.+..++...+=+|..+.
T Consensus 152 ~~~~l~~l~~~e~~~il~~~~~~~~~~~~~~al~~ia~~~~G~pR~~~ 199 (305)
T TIGR00635 152 IILRLEFYTVEELAEIVSRSAGLLNVEIEPEAALEIARRSRGTPRIAN 199 (305)
T ss_pred eEEEeCCCCHHHHHHHHHHHHHHhCCCcCHHHHHHHHHHhCCCcchHH
Confidence 99999999999999999877653322222 223444443333444443
No 49
>COG0466 Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones]
Probab=99.57 E-value=2.8e-14 Score=149.80 Aligned_cols=146 Identities=23% Similarity=0.237 Sum_probs=110.5
Q ss_pred ccccChhhHHHHHHHHHHHHhCHHHHHHhCCCCCceeEEeCCCCCcHHHHHHHHHHHcCCCeEEecccCcCChHHHHH--
Q 035603 194 TLAMASKKKEAIKKDLIKFTEGKEYYAKIGKAWKRGYLLFGPPGTGKSTMIAAMANCLNYDVYDLELTSVENNNELRS-- 271 (431)
Q Consensus 194 ~l~g~~~~k~~i~~~l~~~~~~~~~~~~~g~~~~rg~LL~GPPGtGKTsla~aiA~~l~~~i~~l~~~~~~~~~~l~~-- 271 (431)
+-.|.+++|+.|++.+.--...+ .-...-++|+||||+|||||+++||..+|..|+.+++..+.++++++.
T Consensus 324 dHYGLekVKeRIlEyLAV~~l~~-------~~kGpILcLVGPPGVGKTSLgkSIA~al~RkfvR~sLGGvrDEAEIRGHR 396 (782)
T COG0466 324 DHYGLEKVKERILEYLAVQKLTK-------KLKGPILCLVGPPGVGKTSLGKSIAKALGRKFVRISLGGVRDEAEIRGHR 396 (782)
T ss_pred cccCchhHHHHHHHHHHHHHHhc-------cCCCcEEEEECCCCCCchhHHHHHHHHhCCCEEEEecCccccHHHhcccc
Confidence 45789999999998775444332 122235789999999999999999999999999999999988887753
Q ss_pred --HHHHhhhc------------------------ccchhhHHHHHHHHhcCccc-----------CCCCceEEEEecCCC
Q 035603 272 --LLVDISSK------------------------KKKSNVTLSGLLNCIGGLWS-----------TCGGERIIVFTTNHV 314 (431)
Q Consensus 272 --l~~~~~~~------------------------~~~~~~~~s~lL~~ldg~~~-----------~~~~~~ivI~TTN~~ 314 (431)
.+...+++ ......--+.||..||--.. ..-.++++|+|+|..
T Consensus 397 RTYIGamPGrIiQ~mkka~~~NPv~LLDEIDKm~ss~rGDPaSALLEVLDPEQN~~F~DhYLev~yDLS~VmFiaTANsl 476 (782)
T COG0466 397 RTYIGAMPGKIIQGMKKAGVKNPVFLLDEIDKMGSSFRGDPASALLEVLDPEQNNTFSDHYLEVPYDLSKVMFIATANSL 476 (782)
T ss_pred ccccccCChHHHHHHHHhCCcCCeEEeechhhccCCCCCChHHHHHhhcCHhhcCchhhccccCccchhheEEEeecCcc
Confidence 11111111 22234456778887774211 112368999999999
Q ss_pred CCCChhhhccCceeEEEEcCCCCHHHHHHHHHHhh
Q 035603 315 DKLDPALIRRGRMDKHIEMPYCCFEAFKVLAKNYL 349 (431)
Q Consensus 315 ~~Ld~AllRpGRfd~~I~~~~p~~~~r~~i~~~~l 349 (431)
+.+|.+|+. ||. .|+++-.+.++..+|+++||
T Consensus 477 ~tIP~PLlD--RME-iI~lsgYt~~EKl~IAk~~L 508 (782)
T COG0466 477 DTIPAPLLD--RME-VIRLSGYTEDEKLEIAKRHL 508 (782)
T ss_pred ccCChHHhc--cee-eeeecCCChHHHHHHHHHhc
Confidence 999999999 995 79999999999999999998
No 50
>TIGR00763 lon ATP-dependent protease La. This protein is induced by heat shock and other stresses in E. coli, B. subtilis, and other species. The yeast member, designated PIM1, is located in the mitochondrial matrix, required for mitochondrial function, and also induced by heat shock.
Probab=99.57 E-value=1.3e-13 Score=152.27 Aligned_cols=147 Identities=26% Similarity=0.253 Sum_probs=106.4
Q ss_pred ccccChhhHHHHHHHHHHHHhCHHHHHHhCCCCCceeEEeCCCCCcHHHHHHHHHHHcCCCeEEecccCcCCh-------
Q 035603 194 TLAMASKKKEAIKKDLIKFTEGKEYYAKIGKAWKRGYLLFGPPGTGKSTMIAAMANCLNYDVYDLELTSVENN------- 266 (431)
Q Consensus 194 ~l~g~~~~k~~i~~~l~~~~~~~~~~~~~g~~~~rg~LL~GPPGtGKTsla~aiA~~l~~~i~~l~~~~~~~~------- 266 (431)
++.|.+++|+.|.+.+...... +...+..+||+||||||||++|++||+.++.+++.++++...+.
T Consensus 321 ~~~G~~~~k~~i~~~~~~~~~~-------~~~~~~~lll~GppG~GKT~lAk~iA~~l~~~~~~i~~~~~~~~~~i~g~~ 393 (775)
T TIGR00763 321 DHYGLKKVKERILEYLAVQKLR-------GKMKGPILCLVGPPGVGKTSLGKSIAKALNRKFVRFSLGGVRDEAEIRGHR 393 (775)
T ss_pred hcCChHHHHHHHHHHHHHHHhh-------cCCCCceEEEECCCCCCHHHHHHHHHHHhcCCeEEEeCCCcccHHHHcCCC
Confidence 4789999999988866544322 22334479999999999999999999999999999987654322
Q ss_pred --------HHHHHHHHHhhhc-------------ccchhhHHHHHHHHhcCc-----ccC------CCCceEEEEecCCC
Q 035603 267 --------NELRSLLVDISSK-------------KKKSNVTLSGLLNCIGGL-----WST------CGGERIIVFTTNHV 314 (431)
Q Consensus 267 --------~~l~~l~~~~~~~-------------~~~~~~~~s~lL~~ldg~-----~~~------~~~~~ivI~TTN~~ 314 (431)
..+.+.|..+... ........+.||..||.. ... .-.++++|+|||.+
T Consensus 394 ~~~~g~~~g~i~~~l~~~~~~~~villDEidk~~~~~~~~~~~aLl~~ld~~~~~~f~d~~~~~~~d~s~v~~I~TtN~~ 473 (775)
T TIGR00763 394 RTYVGAMPGRIIQGLKKAKTKNPLFLLDEIDKIGSSFRGDPASALLEVLDPEQNNAFSDHYLDVPFDLSKVIFIATANSI 473 (775)
T ss_pred CceeCCCCchHHHHHHHhCcCCCEEEEechhhcCCccCCCHHHHHHHhcCHHhcCccccccCCceeccCCEEEEEecCCc
Confidence 2334444443222 111223456788888731 100 11358999999999
Q ss_pred CCCChhhhccCceeEEEEcCCCCHHHHHHHHHHhhc
Q 035603 315 DKLDPALIRRGRMDKHIEMPYCCFEAFKVLAKNYLE 350 (431)
Q Consensus 315 ~~Ld~AllRpGRfd~~I~~~~p~~~~r~~i~~~~l~ 350 (431)
+.|||+|++ ||+ .|+|+.++.+++..|++.|+.
T Consensus 474 ~~i~~~L~~--R~~-vi~~~~~~~~e~~~I~~~~l~ 506 (775)
T TIGR00763 474 DTIPRPLLD--RME-VIELSGYTEEEKLEIAKKYLI 506 (775)
T ss_pred hhCCHHHhC--Cee-EEecCCCCHHHHHHHHHHHHH
Confidence 999999999 996 689999999999999999873
No 51
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.57 E-value=7.3e-14 Score=145.51 Aligned_cols=144 Identities=24% Similarity=0.357 Sum_probs=104.5
Q ss_pred cCCCCccccccChhhHHHHHHHHHHHHhCHHHHHHhCCCCCceeEEeCCCCCcHHHHHHHHHHHcCC-------------
Q 035603 187 EHPATFDTLAMASKKKEAIKKDLIKFTEGKEYYAKIGKAWKRGYLLFGPPGTGKSTMIAAMANCLNY------------- 253 (431)
Q Consensus 187 ~~p~~f~~l~g~~~~k~~i~~~l~~~~~~~~~~~~~g~~~~rg~LL~GPPGtGKTsla~aiA~~l~~------------- 253 (431)
-+|.+|++++|++.+++.|...+. .. ..+.++|||||||||||++|+++|+.+++
T Consensus 8 yRP~~~~divGq~~i~~~L~~~i~----~~--------~l~~~~Lf~GPpGtGKTTlA~~lA~~l~~~~~~~~~pc~~c~ 75 (472)
T PRK14962 8 YRPKTFSEVVGQDHVKKLIINALK----KN--------SISHAYIFAGPRGTGKTTVARILAKSLNCENRKGVEPCNECR 75 (472)
T ss_pred HCCCCHHHccCcHHHHHHHHHHHH----cC--------CCCeEEEEECCCCCCHHHHHHHHHHHhccccCCCCCCCcccH
Confidence 479999999999998776654332 21 23557999999999999999999999876
Q ss_pred -----------CeEEecccCcCChHHHHHHHHHhhhc--------------ccchhhHHHHHHHHhcCcccCCCCceEEE
Q 035603 254 -----------DVYDLELTSVENNNELRSLLVDISSK--------------KKKSNVTLSGLLNCIGGLWSTCGGERIIV 308 (431)
Q Consensus 254 -----------~i~~l~~~~~~~~~~l~~l~~~~~~~--------------~~~~~~~~s~lL~~ldg~~~~~~~~~ivI 308 (431)
+++.++.+.-.+.+.++++....... +.-.....+.||..++.. ++.+++|
T Consensus 76 ~c~~i~~g~~~dv~el~aa~~~gid~iR~i~~~~~~~p~~~~~kVvIIDE~h~Lt~~a~~~LLk~LE~p----~~~vv~I 151 (472)
T PRK14962 76 ACRSIDEGTFMDVIELDAASNRGIDEIRKIRDAVGYRPMEGKYKVYIIDEVHMLTKEAFNALLKTLEEP----PSHVVFV 151 (472)
T ss_pred HHHHHhcCCCCccEEEeCcccCCHHHHHHHHHHHhhChhcCCeEEEEEEChHHhHHHHHHHHHHHHHhC----CCcEEEE
Confidence 56777765444456676655443321 122334567788888743 3457888
Q ss_pred EecCCCCCCChhhhccCceeEEEEcCCCCHHHHHHHHHHhh
Q 035603 309 FTTNHVDKLDPALIRRGRMDKHIEMPYCCFEAFKVLAKNYL 349 (431)
Q Consensus 309 ~TTN~~~~Ld~AllRpGRfd~~I~~~~p~~~~r~~i~~~~l 349 (431)
++||.+..+++++.+ |+ ..++|..++.++...+++...
T Consensus 152 lattn~~kl~~~L~S--R~-~vv~f~~l~~~el~~~L~~i~ 189 (472)
T PRK14962 152 LATTNLEKVPPTIIS--RC-QVIEFRNISDELIIKRLQEVA 189 (472)
T ss_pred EEeCChHhhhHHHhc--Cc-EEEEECCccHHHHHHHHHHHH
Confidence 888888899999998 66 479999999888777776654
No 52
>PRK12323 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.55 E-value=5.8e-14 Score=148.36 Aligned_cols=146 Identities=18% Similarity=0.232 Sum_probs=111.6
Q ss_pred cCCCCccccccChhhHHHHHHHHHHHHhCHHHHHHhCCCCCceeEEeCCCCCcHHHHHHHHHHHcCC-------------
Q 035603 187 EHPATFDTLAMASKKKEAIKKDLIKFTEGKEYYAKIGKAWKRGYLLFGPPGTGKSTMIAAMANCLNY------------- 253 (431)
Q Consensus 187 ~~p~~f~~l~g~~~~k~~i~~~l~~~~~~~~~~~~~g~~~~rg~LL~GPPGtGKTsla~aiA~~l~~------------- 253 (431)
.+|.+|++|+|++.+++.|.+.+.. | ..+..|||+||+|||||++|+++|+.+++
T Consensus 10 YRPqtFddVIGQe~vv~~L~~al~~-----------g-RLpHA~LFtGP~GvGKTTLAriLAkaLnC~~p~~~~g~~~~P 77 (700)
T PRK12323 10 WRPRDFTTLVGQEHVVRALTHALEQ-----------Q-RLHHAYLFTGTRGVGKTTLSRILAKSLNCTGADGEGGITAQP 77 (700)
T ss_pred hCCCcHHHHcCcHHHHHHHHHHHHh-----------C-CCceEEEEECCCCCCHHHHHHHHHHHhcCCCccccccCCCCC
Confidence 4799999999999999887665431 1 23468999999999999999999999986
Q ss_pred ----------------CeEEecccCcCChHHHHHHHHHhhhc--------------ccchhhHHHHHHHHhcCcccCCCC
Q 035603 254 ----------------DVYDLELTSVENNNELRSLLVDISSK--------------KKKSNVTLSGLLNCIGGLWSTCGG 303 (431)
Q Consensus 254 ----------------~i~~l~~~~~~~~~~l~~l~~~~~~~--------------~~~~~~~~s~lL~~ldg~~~~~~~ 303 (431)
+++.++..+-.+.+++++++...... +.-+....+.||..|+. +.+
T Consensus 78 CG~C~sC~~I~aG~hpDviEIdAas~~gVDdIReLie~~~~~P~~gr~KViIIDEah~Ls~~AaNALLKTLEE----PP~ 153 (700)
T PRK12323 78 CGQCRACTEIDAGRFVDYIEMDAASNRGVDEMAQLLDKAVYAPTAGRFKVYMIDEVHMLTNHAFNAMLKTLEE----PPE 153 (700)
T ss_pred CcccHHHHHHHcCCCCcceEecccccCCHHHHHHHHHHHHhchhcCCceEEEEEChHhcCHHHHHHHHHhhcc----CCC
Confidence 45556655434456677776553321 33455678889998884 345
Q ss_pred ceEEEEecCCCCCCChhhhccCceeEEEEcCCCCHHHHHHHHHHhhch
Q 035603 304 ERIIVFTTNHVDKLDPALIRRGRMDKHIEMPYCCFEAFKVLAKNYLEI 351 (431)
Q Consensus 304 ~~ivI~TTN~~~~Ld~AllRpGRfd~~I~~~~p~~~~r~~i~~~~l~~ 351 (431)
.+++|++||.+++|.+.+++ |. ..+.|..++.++....++..+..
T Consensus 154 ~v~FILaTtep~kLlpTIrS--RC-q~f~f~~ls~eei~~~L~~Il~~ 198 (700)
T PRK12323 154 HVKFILATTDPQKIPVTVLS--RC-LQFNLKQMPPGHIVSHLDAILGE 198 (700)
T ss_pred CceEEEEeCChHhhhhHHHH--HH-HhcccCCCChHHHHHHHHHHHHH
Confidence 68999999999999999998 55 68899999998888877766543
No 53
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=99.55 E-value=8.5e-14 Score=148.85 Aligned_cols=146 Identities=19% Similarity=0.262 Sum_probs=110.8
Q ss_pred cCCCCccccccChhhHHHHHHHHHHHHhCHHHHHHhCCCCCceeEEeCCCCCcHHHHHHHHHHHcCC-------------
Q 035603 187 EHPATFDTLAMASKKKEAIKKDLIKFTEGKEYYAKIGKAWKRGYLLFGPPGTGKSTMIAAMANCLNY------------- 253 (431)
Q Consensus 187 ~~p~~f~~l~g~~~~k~~i~~~l~~~~~~~~~~~~~g~~~~rg~LL~GPPGtGKTsla~aiA~~l~~------------- 253 (431)
.+|.+|++|+|++.+++.|.+.+. . | ..+..||||||||||||++++++|+.+++
T Consensus 10 YRPqtFdEVIGQe~Vv~~L~~aL~----~-------g-RL~HAyLFtGPpGvGKTTlAriLAKaLnCe~~~~~~PCG~C~ 77 (830)
T PRK07003 10 WRPKDFASLVGQEHVVRALTHALD----G-------G-RLHHAYLFTGTRGVGKTTLSRIFAKALNCETGVTSQPCGVCR 77 (830)
T ss_pred hCCCcHHHHcCcHHHHHHHHHHHh----c-------C-CCCeEEEEECCCCCCHHHHHHHHHHHhcCccCCCCCCCcccH
Confidence 379999999999999888766542 1 1 23568999999999999999999999875
Q ss_pred -----------CeEEecccCcCChHHHHHHHHHhhhc--------------ccchhhHHHHHHHHhcCcccCCCCceEEE
Q 035603 254 -----------DVYDLELTSVENNNELRSLLVDISSK--------------KKKSNVTLSGLLNCIGGLWSTCGGERIIV 308 (431)
Q Consensus 254 -----------~i~~l~~~~~~~~~~l~~l~~~~~~~--------------~~~~~~~~s~lL~~ldg~~~~~~~~~ivI 308 (431)
+++.+|..+-.+.+++++++...... +.-+....+.||..|+.. ...++||
T Consensus 78 sCr~I~~G~h~DviEIDAas~rgVDdIReLIe~a~~~P~~gr~KVIIIDEah~LT~~A~NALLKtLEEP----P~~v~FI 153 (830)
T PRK07003 78 ACREIDEGRFVDYVEMDAASNRGVDEMAALLERAVYAPVDARFKVYMIDEVHMLTNHAFNAMLKTLEEP----PPHVKFI 153 (830)
T ss_pred HHHHHhcCCCceEEEecccccccHHHHHHHHHHHHhccccCCceEEEEeChhhCCHHHHHHHHHHHHhc----CCCeEEE
Confidence 45556655434456677776654321 334455678899988853 3458999
Q ss_pred EecCCCCCCChhhhccCceeEEEEcCCCCHHHHHHHHHHhhch
Q 035603 309 FTTNHVDKLDPALIRRGRMDKHIEMPYCCFEAFKVLAKNYLEI 351 (431)
Q Consensus 309 ~TTN~~~~Ld~AllRpGRfd~~I~~~~p~~~~r~~i~~~~l~~ 351 (431)
++||.+++|.+.|++ |+ .++.|..++.++....++..+..
T Consensus 154 LaTtd~~KIp~TIrS--RC-q~f~Fk~Ls~eeIv~~L~~Il~~ 193 (830)
T PRK07003 154 LATTDPQKIPVTVLS--RC-LQFNLKQMPAGHIVSHLERILGE 193 (830)
T ss_pred EEECChhhccchhhh--he-EEEecCCcCHHHHHHHHHHHHHH
Confidence 999999999999998 55 78999999999888888777653
No 54
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.55 E-value=8.3e-14 Score=143.65 Aligned_cols=146 Identities=18% Similarity=0.324 Sum_probs=106.4
Q ss_pred ccCCCCccccccChhhHHHHHHHHHHHHhCHHHHHHhCCCCCceeEEeCCCCCcHHHHHHHHHHHcCC------------
Q 035603 186 FEHPATFDTLAMASKKKEAIKKDLIKFTEGKEYYAKIGKAWKRGYLLFGPPGTGKSTMIAAMANCLNY------------ 253 (431)
Q Consensus 186 ~~~p~~f~~l~g~~~~k~~i~~~l~~~~~~~~~~~~~g~~~~rg~LL~GPPGtGKTsla~aiA~~l~~------------ 253 (431)
.-.|.+|++|+|++.+.+.|...+. . | ..+..|||+||||||||++|+++|+.+++
T Consensus 11 KyRP~~f~dvVGQe~iv~~L~~~i~----~-------~-ri~ha~Lf~GP~GtGKTTlAriLAk~Lnce~~~~~~pCg~C 78 (484)
T PRK14956 11 KYRPQFFRDVIHQDLAIGALQNALK----S-------G-KIGHAYIFFGPRGVGKTTIARILAKRLNCENPIGNEPCNEC 78 (484)
T ss_pred HhCCCCHHHHhChHHHHHHHHHHHH----c-------C-CCCeEEEEECCCCCCHHHHHHHHHHhcCcccccCccccCCC
Confidence 3479999999999999887765543 1 1 13457999999999999999999999987
Q ss_pred ------------CeEEecccCcCChHHHHHHHHHhhhc--------------ccchhhHHHHHHHHhcCcccCCCCceEE
Q 035603 254 ------------DVYDLELTSVENNNELRSLLVDISSK--------------KKKSNVTLSGLLNCIGGLWSTCGGERII 307 (431)
Q Consensus 254 ------------~i~~l~~~~~~~~~~l~~l~~~~~~~--------------~~~~~~~~s~lL~~ldg~~~~~~~~~iv 307 (431)
+++.++...-.+.+.++++....... +.-+....+.||..|+. +...+++
T Consensus 79 ~sC~~i~~g~~~dviEIdaas~~gVd~IReL~e~l~~~p~~g~~KV~IIDEah~Ls~~A~NALLKtLEE----Pp~~viF 154 (484)
T PRK14956 79 TSCLEITKGISSDVLEIDAASNRGIENIRELRDNVKFAPMGGKYKVYIIDEVHMLTDQSFNALLKTLEE----PPAHIVF 154 (484)
T ss_pred cHHHHHHccCCccceeechhhcccHHHHHHHHHHHHhhhhcCCCEEEEEechhhcCHHHHHHHHHHhhc----CCCceEE
Confidence 35555554333445566654433211 33455678889988874 3456899
Q ss_pred EEecCCCCCCChhhhccCceeEEEEcCCCCHHHHHHHHHHhhc
Q 035603 308 VFTTNHVDKLDPALIRRGRMDKHIEMPYCCFEAFKVLAKNYLE 350 (431)
Q Consensus 308 I~TTN~~~~Ld~AllRpGRfd~~I~~~~p~~~~r~~i~~~~l~ 350 (431)
|++||.++.|++++++ |. .++.|..++.++....++..+.
T Consensus 155 ILaTte~~kI~~TI~S--RC-q~~~f~~ls~~~i~~~L~~i~~ 194 (484)
T PRK14956 155 ILATTEFHKIPETILS--RC-QDFIFKKVPLSVLQDYSEKLCK 194 (484)
T ss_pred EeecCChhhccHHHHh--hh-heeeecCCCHHHHHHHHHHHHH
Confidence 9999999999999998 65 4688888888777776666544
No 55
>PRK14960 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.55 E-value=8.7e-14 Score=147.30 Aligned_cols=147 Identities=23% Similarity=0.345 Sum_probs=111.1
Q ss_pred cCCCCccccccChhhHHHHHHHHHHHHhCHHHHHHhCCCCCceeEEeCCCCCcHHHHHHHHHHHcCC-------------
Q 035603 187 EHPATFDTLAMASKKKEAIKKDLIKFTEGKEYYAKIGKAWKRGYLLFGPPGTGKSTMIAAMANCLNY------------- 253 (431)
Q Consensus 187 ~~p~~f~~l~g~~~~k~~i~~~l~~~~~~~~~~~~~g~~~~rg~LL~GPPGtGKTsla~aiA~~l~~------------- 253 (431)
.+|.+|++|+|.+.+++.|...+. .| ..+.+|||+||||||||++|+++|+.+++
T Consensus 9 yRPktFddVIGQe~vv~~L~~aI~-----------~g-rl~HAyLF~GPpGvGKTTlAriLAK~LnC~~~~~~~pCg~C~ 76 (702)
T PRK14960 9 YRPRNFNELVGQNHVSRALSSALE-----------RG-RLHHAYLFTGTRGVGKTTIARILAKCLNCETGVTSTPCEVCA 76 (702)
T ss_pred hCCCCHHHhcCcHHHHHHHHHHHH-----------cC-CCCeEEEEECCCCCCHHHHHHHHHHHhCCCcCCCCCCCccCH
Confidence 368999999999999888866553 12 23468999999999999999999999876
Q ss_pred -----------CeEEecccCcCChHHHHHHHHHhhhc--------------ccchhhHHHHHHHHhcCcccCCCCceEEE
Q 035603 254 -----------DVYDLELTSVENNNELRSLLVDISSK--------------KKKSNVTLSGLLNCIGGLWSTCGGERIIV 308 (431)
Q Consensus 254 -----------~i~~l~~~~~~~~~~l~~l~~~~~~~--------------~~~~~~~~s~lL~~ldg~~~~~~~~~ivI 308 (431)
+++.++.++-...+.+++++...... +.-+....+.||..|+.. .+.+.+|
T Consensus 77 sC~~I~~g~hpDviEIDAAs~~~VddIReli~~~~y~P~~gk~KV~IIDEVh~LS~~A~NALLKtLEEP----P~~v~FI 152 (702)
T PRK14960 77 TCKAVNEGRFIDLIEIDAASRTKVEDTRELLDNVPYAPTQGRFKVYLIDEVHMLSTHSFNALLKTLEEP----PEHVKFL 152 (702)
T ss_pred HHHHHhcCCCCceEEecccccCCHHHHHHHHHHHhhhhhcCCcEEEEEechHhcCHHHHHHHHHHHhcC----CCCcEEE
Confidence 56666766544566777776544221 333456778899988853 3457888
Q ss_pred EecCCCCCCChhhhccCceeEEEEcCCCCHHHHHHHHHHhhchh
Q 035603 309 FTTNHVDKLDPALIRRGRMDKHIEMPYCCFEAFKVLAKNYLEIE 352 (431)
Q Consensus 309 ~TTN~~~~Ld~AllRpGRfd~~I~~~~p~~~~r~~i~~~~l~~~ 352 (431)
++||.+..+++.+++ |. ..++|..++.++....++..+...
T Consensus 153 LaTtd~~kIp~TIlS--RC-q~feFkpLs~eEI~k~L~~Il~kE 193 (702)
T PRK14960 153 FATTDPQKLPITVIS--RC-LQFTLRPLAVDEITKHLGAILEKE 193 (702)
T ss_pred EEECChHhhhHHHHH--hh-heeeccCCCHHHHHHHHHHHHHHc
Confidence 888999999999987 55 688999999988887777766543
No 56
>PRK04195 replication factor C large subunit; Provisional
Probab=99.55 E-value=1.5e-13 Score=144.43 Aligned_cols=152 Identities=20% Similarity=0.314 Sum_probs=114.7
Q ss_pred cceeeeccCCCCccccccChhhHHHHHHHHHHHHhCHHHHHHhCCCCCceeEEeCCCCCcHHHHHHHHHHHcCCCeEEec
Q 035603 180 KWSHVYFEHPATFDTLAMASKKKEAIKKDLIKFTEGKEYYAKIGKAWKRGYLLFGPPGTGKSTMIAAMANCLNYDVYDLE 259 (431)
Q Consensus 180 ~w~~~~~~~p~~f~~l~g~~~~k~~i~~~l~~~~~~~~~~~~~g~~~~rg~LL~GPPGtGKTsla~aiA~~l~~~i~~l~ 259 (431)
.|. .--.|.+|++|+|.+++++.|.+.+..+.. |.+ ++++|||||||||||++|+++|++++++++.++
T Consensus 3 ~W~--eKyrP~~l~dlvg~~~~~~~l~~~l~~~~~--------g~~-~~~lLL~GppG~GKTtla~ala~el~~~~ieln 71 (482)
T PRK04195 3 PWV--EKYRPKTLSDVVGNEKAKEQLREWIESWLK--------GKP-KKALLLYGPPGVGKTSLAHALANDYGWEVIELN 71 (482)
T ss_pred Cch--hhcCCCCHHHhcCCHHHHHHHHHHHHHHhc--------CCC-CCeEEEECCCCCCHHHHHHHHHHHcCCCEEEEc
Confidence 454 556899999999999999999888876663 223 679999999999999999999999999999999
Q ss_pred ccCcCChHHHHHHHHHhhhc----------------c----cchhhHHHHHHHHhcCcccCCCCceEEEEecCCCCCCCh
Q 035603 260 LTSVENNNELRSLLVDISSK----------------K----KKSNVTLSGLLNCIGGLWSTCGGERIIVFTTNHVDKLDP 319 (431)
Q Consensus 260 ~~~~~~~~~l~~l~~~~~~~----------------~----~~~~~~~s~lL~~ldg~~~~~~~~~ivI~TTN~~~~Ld~ 319 (431)
.++..+...+..+....... + .........|++.++.. ...+|+++|.+..+++
T Consensus 72 asd~r~~~~i~~~i~~~~~~~sl~~~~~kvIiIDEaD~L~~~~d~~~~~aL~~~l~~~------~~~iIli~n~~~~~~~ 145 (482)
T PRK04195 72 ASDQRTADVIERVAGEAATSGSLFGARRKLILLDEVDGIHGNEDRGGARAILELIKKA------KQPIILTANDPYDPSL 145 (482)
T ss_pred ccccccHHHHHHHHHHhhccCcccCCCCeEEEEecCcccccccchhHHHHHHHHHHcC------CCCEEEeccCccccch
Confidence 98877666666665443321 1 11123456677776621 2457778899998888
Q ss_pred -hhhccCceeEEEEcCCCCHHHHHHHHHHhhch
Q 035603 320 -ALIRRGRMDKHIEMPYCCFEAFKVLAKNYLEI 351 (431)
Q Consensus 320 -AllRpGRfd~~I~~~~p~~~~r~~i~~~~l~~ 351 (431)
.|.+ .-..|+|+.|+..+...+++..+..
T Consensus 146 k~Lrs---r~~~I~f~~~~~~~i~~~L~~i~~~ 175 (482)
T PRK04195 146 RELRN---ACLMIEFKRLSTRSIVPVLKRICRK 175 (482)
T ss_pred hhHhc---cceEEEecCCCHHHHHHHHHHHHHH
Confidence 5554 3367999999999988888877643
No 57
>PF05673 DUF815: Protein of unknown function (DUF815); InterPro: IPR008533 This domain consists of several bacterial proteins of unknown function.
Probab=99.55 E-value=2e-13 Score=128.80 Aligned_cols=164 Identities=21% Similarity=0.261 Sum_probs=133.4
Q ss_pred CcceeeeccCCCCccccccChhhHHHHHHHHHHHHhCHHHHHHhCCCCCceeEEeCCCCCcHHHHHHHHHHHc---CCCe
Q 035603 179 KKWSHVYFEHPATFDTLAMASKKKEAIKKDLIKFTEGKEYYAKIGKAWKRGYLLFGPPGTGKSTMIAAMANCL---NYDV 255 (431)
Q Consensus 179 ~~w~~~~~~~p~~f~~l~g~~~~k~~i~~~l~~~~~~~~~~~~~g~~~~rg~LL~GPPGtGKTsla~aiA~~l---~~~i 255 (431)
.....+....|..+++|+|.+.+|+.|.+....|+.. . +...+||+|++||||||+++|+.+++ |+.+
T Consensus 13 ~~l~~i~~~~~~~l~~L~Gie~Qk~~l~~Nt~~Fl~G--------~-pannvLL~G~rGtGKSSlVkall~~y~~~GLRl 83 (249)
T PF05673_consen 13 GYLEPIKHPDPIRLDDLIGIERQKEALIENTEQFLQG--------L-PANNVLLWGARGTGKSSLVKALLNEYADQGLRL 83 (249)
T ss_pred CcEEecCCCCCCCHHHhcCHHHHHHHHHHHHHHHHcC--------C-CCcceEEecCCCCCHHHHHHHHHHHHhhcCceE
Confidence 3456666677799999999999999999999999985 2 35789999999999999999999865 6788
Q ss_pred EEecccCcCChHHHHHHHHHhhhc---------ccchhhHHHHHHHHhcCcccCCCCceEEEEecCCCCCCChh------
Q 035603 256 YDLELTSVENNNELRSLLVDISSK---------KKKSNVTLSGLLNCIGGLWSTCGGERIIVFTTNHVDKLDPA------ 320 (431)
Q Consensus 256 ~~l~~~~~~~~~~l~~l~~~~~~~---------~~~~~~~~s~lL~~ldg~~~~~~~~~ivI~TTN~~~~Ld~A------ 320 (431)
+.+.-.++..-..|...+.....+ ..........|-..|||--...+++++|.+|+|+-..++.-
T Consensus 84 Iev~k~~L~~l~~l~~~l~~~~~kFIlf~DDLsFe~~d~~yk~LKs~LeGgle~~P~NvliyATSNRRHLv~E~~~d~~~ 163 (249)
T PF05673_consen 84 IEVSKEDLGDLPELLDLLRDRPYKFILFCDDLSFEEGDTEYKALKSVLEGGLEARPDNVLIYATSNRRHLVPESFSDRED 163 (249)
T ss_pred EEECHHHhccHHHHHHHHhcCCCCEEEEecCCCCCCCcHHHHHHHHHhcCccccCCCcEEEEEecchhhccchhhhhccC
Confidence 888888877766777776654444 34556677889999999887888899999999986555433
Q ss_pred -----------------hhccCceeEEEEcCCCCHHHHHHHHHHhhchhc
Q 035603 321 -----------------LIRRGRMDKHIEMPYCCFEAFKVLAKNYLEIES 353 (431)
Q Consensus 321 -----------------llRpGRfd~~I~~~~p~~~~r~~i~~~~l~~~~ 353 (431)
|-. ||...|.|..|+.+...+|++++.....
T Consensus 164 ~~~~eih~~d~~eEklSLsD--RFGL~l~F~~~~q~~YL~IV~~~~~~~g 211 (249)
T PF05673_consen 164 IQDDEIHPSDTIEEKLSLSD--RFGLWLSFYPPDQEEYLAIVRHYAERYG 211 (249)
T ss_pred CCccccCcchHHHHHHhHHH--hCCcEEEecCCCHHHHHHHHHHHHHHcC
Confidence 333 8999999999999999999999986443
No 58
>KOG2004 consensus Mitochondrial ATP-dependent protease PIM1/LON [Posttranslational modification, protein turnover, chaperones]
Probab=99.54 E-value=5.7e-14 Score=146.85 Aligned_cols=148 Identities=21% Similarity=0.287 Sum_probs=108.8
Q ss_pred cccccChhhHHHHHHHHHHHHhCHHHHHHhCCCCCceeEEeCCCCCcHHHHHHHHHHHcCCCeEEecccCcCChHHHHH-
Q 035603 193 DTLAMASKKKEAIKKDLIKFTEGKEYYAKIGKAWKRGYLLFGPPGTGKSTMIAAMANCLNYDVYDLELTSVENNNELRS- 271 (431)
Q Consensus 193 ~~l~g~~~~k~~i~~~l~~~~~~~~~~~~~g~~~~rg~LL~GPPGtGKTsla~aiA~~l~~~i~~l~~~~~~~~~~l~~- 271 (431)
+|-.|.+++|+.|++.+.--.. .|-..++-++|+||||+||||++++||..||..|+.++...+.+.++++.
T Consensus 411 eDHYgm~dVKeRILEfiAV~kL-------rgs~qGkIlCf~GPPGVGKTSI~kSIA~ALnRkFfRfSvGG~tDvAeIkGH 483 (906)
T KOG2004|consen 411 EDHYGMEDVKERILEFIAVGKL-------RGSVQGKILCFVGPPGVGKTSIAKSIARALNRKFFRFSVGGMTDVAEIKGH 483 (906)
T ss_pred ccccchHHHHHHHHHHHHHHhh-------cccCCCcEEEEeCCCCCCcccHHHHHHHHhCCceEEEeccccccHHhhccc
Confidence 4557888999999887643222 23344567889999999999999999999999999999998877666542
Q ss_pred ---HHHHhhhc------------------------ccchhhHHHHHHHHhcCcccC-----------CCCceEEEEecCC
Q 035603 272 ---LLVDISSK------------------------KKKSNVTLSGLLNCIGGLWST-----------CGGERIIVFTTNH 313 (431)
Q Consensus 272 ---l~~~~~~~------------------------~~~~~~~~s~lL~~ldg~~~~-----------~~~~~ivI~TTN~ 313 (431)
+....+++ .+....--+.||..||--..+ .-..+++|+|+|.
T Consensus 484 RRTYVGAMPGkiIq~LK~v~t~NPliLiDEvDKlG~g~qGDPasALLElLDPEQNanFlDHYLdVp~DLSkVLFicTAN~ 563 (906)
T KOG2004|consen 484 RRTYVGAMPGKIIQCLKKVKTENPLILIDEVDKLGSGHQGDPASALLELLDPEQNANFLDHYLDVPVDLSKVLFICTANV 563 (906)
T ss_pred ceeeeccCChHHHHHHHhhCCCCceEEeehhhhhCCCCCCChHHHHHHhcChhhccchhhhccccccchhheEEEEeccc
Confidence 11111111 122334456677666632110 1135899999999
Q ss_pred CCCCChhhhccCceeEEEEcCCCCHHHHHHHHHHhhc
Q 035603 314 VDKLDPALIRRGRMDKHIEMPYCCFEAFKVLAKNYLE 350 (431)
Q Consensus 314 ~~~Ld~AllRpGRfd~~I~~~~p~~~~r~~i~~~~l~ 350 (431)
.+.|||+|+. ||. .|+++-...++...|+++||-
T Consensus 564 idtIP~pLlD--RME-vIelsGYv~eEKv~IA~~yLi 597 (906)
T KOG2004|consen 564 IDTIPPPLLD--RME-VIELSGYVAEEKVKIAERYLI 597 (906)
T ss_pred cccCChhhhh--hhh-eeeccCccHHHHHHHHHHhhh
Confidence 9999999999 995 699999999999999999984
No 59
>PRK14961 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.54 E-value=1.9e-13 Score=138.58 Aligned_cols=145 Identities=22% Similarity=0.300 Sum_probs=104.2
Q ss_pred CCCCccccccChhhHHHHHHHHHHHHhCHHHHHHhCCCCCceeEEeCCCCCcHHHHHHHHHHHcCC--------------
Q 035603 188 HPATFDTLAMASKKKEAIKKDLIKFTEGKEYYAKIGKAWKRGYLLFGPPGTGKSTMIAAMANCLNY-------------- 253 (431)
Q Consensus 188 ~p~~f~~l~g~~~~k~~i~~~l~~~~~~~~~~~~~g~~~~rg~LL~GPPGtGKTsla~aiA~~l~~-------------- 253 (431)
.|.+|++|+|++.+++.+...+. . | ..+..|||+||||||||++|+++|+.+++
T Consensus 11 rP~~~~~iiGq~~~~~~l~~~~~----~-------~-~~~h~~L~~Gp~G~GKTtla~~la~~l~c~~~~~~~pc~~c~~ 78 (363)
T PRK14961 11 RPQYFRDIIGQKHIVTAISNGLS----L-------G-RIHHAWLLSGTRGVGKTTIARLLAKSLNCQNGITSNPCRKCII 78 (363)
T ss_pred CCCchhhccChHHHHHHHHHHHH----c-------C-CCCeEEEEecCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCHH
Confidence 68999999999999888765442 1 1 23568999999999999999999999864
Q ss_pred ----------CeEEecccCcCChHHHHHHHHHhhhc--------------ccchhhHHHHHHHHhcCcccCCCCceEEEE
Q 035603 254 ----------DVYDLELTSVENNNELRSLLVDISSK--------------KKKSNVTLSGLLNCIGGLWSTCGGERIIVF 309 (431)
Q Consensus 254 ----------~i~~l~~~~~~~~~~l~~l~~~~~~~--------------~~~~~~~~s~lL~~ldg~~~~~~~~~ivI~ 309 (431)
+++.++.++-...+.+++++...... +.-+....+.||..++.. ++.+.+|+
T Consensus 79 c~~~~~~~~~d~~~~~~~~~~~v~~ir~i~~~~~~~p~~~~~kviIIDEa~~l~~~a~naLLk~lEe~----~~~~~fIl 154 (363)
T PRK14961 79 CKEIEKGLCLDLIEIDAASRTKVEEMREILDNIYYSPSKSRFKVYLIDEVHMLSRHSFNALLKTLEEP----PQHIKFIL 154 (363)
T ss_pred HHHHhcCCCCceEEecccccCCHHHHHHHHHHHhcCcccCCceEEEEEChhhcCHHHHHHHHHHHhcC----CCCeEEEE
Confidence 34444444322345566665543211 222344567788888753 34577888
Q ss_pred ecCCCCCCChhhhccCceeEEEEcCCCCHHHHHHHHHHhhch
Q 035603 310 TTNHVDKLDPALIRRGRMDKHIEMPYCCFEAFKVLAKNYLEI 351 (431)
Q Consensus 310 TTN~~~~Ld~AllRpGRfd~~I~~~~p~~~~r~~i~~~~l~~ 351 (431)
+|+.++.+.+++.. |+ ..+++++++.++...+++..+..
T Consensus 155 ~t~~~~~l~~tI~S--Rc-~~~~~~~l~~~el~~~L~~~~~~ 193 (363)
T PRK14961 155 ATTDVEKIPKTILS--RC-LQFKLKIISEEKIFNFLKYILIK 193 (363)
T ss_pred EcCChHhhhHHHHh--hc-eEEeCCCCCHHHHHHHHHHHHHH
Confidence 88889999999987 55 67899999999988888776544
No 60
>PRK14964 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.54 E-value=1.3e-13 Score=143.55 Aligned_cols=146 Identities=18% Similarity=0.272 Sum_probs=110.8
Q ss_pred cCCCCccccccChhhHHHHHHHHHHHHhCHHHHHHhCCCCCceeEEeCCCCCcHHHHHHHHHHHcC--------------
Q 035603 187 EHPATFDTLAMASKKKEAIKKDLIKFTEGKEYYAKIGKAWKRGYLLFGPPGTGKSTMIAAMANCLN-------------- 252 (431)
Q Consensus 187 ~~p~~f~~l~g~~~~k~~i~~~l~~~~~~~~~~~~~g~~~~rg~LL~GPPGtGKTsla~aiA~~l~-------------- 252 (431)
..|.+|++|+|++.+++.|.+.+. . | ..+.+|||+||||+|||++|+++|+.++
T Consensus 7 yRP~~f~dliGQe~vv~~L~~a~~----~-------~-ri~ha~Lf~Gp~G~GKTT~ArilAk~LnC~~~~~~~pCg~C~ 74 (491)
T PRK14964 7 YRPSSFKDLVGQDVLVRILRNAFT----L-------N-KIPQSILLVGASGVGKTTCARIISLCLNCSNGPTSDPCGTCH 74 (491)
T ss_pred hCCCCHHHhcCcHHHHHHHHHHHH----c-------C-CCCceEEEECCCCccHHHHHHHHHHHHcCcCCCCCCCccccH
Confidence 368999999999998887654332 1 2 2356899999999999999999999764
Q ss_pred ----------CCeEEecccCcCChHHHHHHHHHhhhc--------------ccchhhHHHHHHHHhcCcccCCCCceEEE
Q 035603 253 ----------YDVYDLELTSVENNNELRSLLVDISSK--------------KKKSNVTLSGLLNCIGGLWSTCGGERIIV 308 (431)
Q Consensus 253 ----------~~i~~l~~~~~~~~~~l~~l~~~~~~~--------------~~~~~~~~s~lL~~ldg~~~~~~~~~ivI 308 (431)
.+++.+|.++..+.++++.++...... +.-+...++.||..|+.. .+.+++|
T Consensus 75 ~C~~i~~~~~~Dv~eidaas~~~vddIR~Iie~~~~~P~~~~~KVvIIDEah~Ls~~A~NaLLK~LEeP----p~~v~fI 150 (491)
T PRK14964 75 NCISIKNSNHPDVIEIDAASNTSVDDIKVILENSCYLPISSKFKVYIIDEVHMLSNSAFNALLKTLEEP----APHVKFI 150 (491)
T ss_pred HHHHHhccCCCCEEEEecccCCCHHHHHHHHHHHHhccccCCceEEEEeChHhCCHHHHHHHHHHHhCC----CCCeEEE
Confidence 356777777655667788877655322 333456788899999854 3458888
Q ss_pred EecCCCCCCChhhhccCceeEEEEcCCCCHHHHHHHHHHhhch
Q 035603 309 FTTNHVDKLDPALIRRGRMDKHIEMPYCCFEAFKVLAKNYLEI 351 (431)
Q Consensus 309 ~TTN~~~~Ld~AllRpGRfd~~I~~~~p~~~~r~~i~~~~l~~ 351 (431)
++|+.+++|.+.++. |. ..++|..++.++....+......
T Consensus 151 latte~~Kl~~tI~S--Rc-~~~~f~~l~~~el~~~L~~ia~~ 190 (491)
T PRK14964 151 LATTEVKKIPVTIIS--RC-QRFDLQKIPTDKLVEHLVDIAKK 190 (491)
T ss_pred EEeCChHHHHHHHHH--hh-eeeecccccHHHHHHHHHHHHHH
Confidence 999999999999998 44 56899999988888777776543
No 61
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=99.53 E-value=2.7e-13 Score=142.01 Aligned_cols=147 Identities=21% Similarity=0.330 Sum_probs=109.1
Q ss_pred ccCCCCccccccChhhHHHHHHHHHHHHhCHHHHHHhCCCCCceeEEeCCCCCcHHHHHHHHHHHcCC------------
Q 035603 186 FEHPATFDTLAMASKKKEAIKKDLIKFTEGKEYYAKIGKAWKRGYLLFGPPGTGKSTMIAAMANCLNY------------ 253 (431)
Q Consensus 186 ~~~p~~f~~l~g~~~~k~~i~~~l~~~~~~~~~~~~~g~~~~rg~LL~GPPGtGKTsla~aiA~~l~~------------ 253 (431)
..+|.+|++++|++.+.+.|...+. . | ..+.++||+||||||||++|+++|+.+++
T Consensus 14 kyRP~~f~dliGq~~vv~~L~~ai~---~--------~-ri~~a~Lf~Gp~G~GKTT~ArilAk~Lnc~~~~~~~~~~~~ 81 (507)
T PRK06645 14 KYRPSNFAELQGQEVLVKVLSYTIL---N--------D-RLAGGYLLTGIRGVGKTTSARIIAKAVNCSALITENTTIKT 81 (507)
T ss_pred hhCCCCHHHhcCcHHHHHHHHHHHH---c--------C-CCCceEEEECCCCCCHHHHHHHHHHHhcCccccccCcCcCC
Confidence 3579999999999998887755332 1 1 23468999999999999999999999875
Q ss_pred ----------------CeEEecccCcCChHHHHHHHHHhhhc--------------ccchhhHHHHHHHHhcCcccCCCC
Q 035603 254 ----------------DVYDLELTSVENNNELRSLLVDISSK--------------KKKSNVTLSGLLNCIGGLWSTCGG 303 (431)
Q Consensus 254 ----------------~i~~l~~~~~~~~~~l~~l~~~~~~~--------------~~~~~~~~s~lL~~ldg~~~~~~~ 303 (431)
+++.++..+-.+.++++.++..+... +.-+...++.||..|+. +..
T Consensus 82 C~~C~~C~~i~~~~h~Dv~eidaas~~~vd~Ir~iie~a~~~P~~~~~KVvIIDEa~~Ls~~a~naLLk~LEe----pp~ 157 (507)
T PRK06645 82 CEQCTNCISFNNHNHPDIIEIDAASKTSVDDIRRIIESAEYKPLQGKHKIFIIDEVHMLSKGAFNALLKTLEE----PPP 157 (507)
T ss_pred CCCChHHHHHhcCCCCcEEEeeccCCCCHHHHHHHHHHHHhccccCCcEEEEEEChhhcCHHHHHHHHHHHhh----cCC
Confidence 34444444334556788877665432 23345667888888874 344
Q ss_pred ceEEEEecCCCCCCChhhhccCceeEEEEcCCCCHHHHHHHHHHhhch
Q 035603 304 ERIIVFTTNHVDKLDPALIRRGRMDKHIEMPYCCFEAFKVLAKNYLEI 351 (431)
Q Consensus 304 ~~ivI~TTN~~~~Ld~AllRpGRfd~~I~~~~p~~~~r~~i~~~~l~~ 351 (431)
.+++|++|+.++++++++++ |. ..++|..++.++...+++..+..
T Consensus 158 ~~vfI~aTte~~kI~~tI~S--Rc-~~~ef~~ls~~el~~~L~~i~~~ 202 (507)
T PRK06645 158 HIIFIFATTEVQKIPATIIS--RC-QRYDLRRLSFEEIFKLLEYITKQ 202 (507)
T ss_pred CEEEEEEeCChHHhhHHHHh--cc-eEEEccCCCHHHHHHHHHHHHHH
Confidence 58888888999999999998 55 57889999999888888776653
No 62
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.51 E-value=1.9e-13 Score=143.76 Aligned_cols=145 Identities=19% Similarity=0.297 Sum_probs=108.0
Q ss_pred cCCCCccccccChhhHHHHHHHHHHHHhCHHHHHHhCCCCCceeEEeCCCCCcHHHHHHHHHHHcCCC------------
Q 035603 187 EHPATFDTLAMASKKKEAIKKDLIKFTEGKEYYAKIGKAWKRGYLLFGPPGTGKSTMIAAMANCLNYD------------ 254 (431)
Q Consensus 187 ~~p~~f~~l~g~~~~k~~i~~~l~~~~~~~~~~~~~g~~~~rg~LL~GPPGtGKTsla~aiA~~l~~~------------ 254 (431)
.+|.+|++|+|.+.+++.|.+.+.. | ..+..|||+||||||||++|+++|+.+++.
T Consensus 10 yRP~~f~divGq~~v~~~L~~~~~~-----------~-~l~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pCg~C~ 77 (509)
T PRK14958 10 WRPRCFQEVIGQAPVVRALSNALDQ-----------Q-YLHHAYLFTGTRGVGKTTISRILAKCLNCEKGVSANPCNDCE 77 (509)
T ss_pred HCCCCHHHhcCCHHHHHHHHHHHHh-----------C-CCCeeEEEECCCCCCHHHHHHHHHHHhcCCCCCCcccCCCCH
Confidence 4699999999999999887765531 1 234589999999999999999999999763
Q ss_pred ------------eEEecccCcCChHHHHHHHHHhhhc--------------ccchhhHHHHHHHHhcCcccCCCCceEEE
Q 035603 255 ------------VYDLELTSVENNNELRSLLVDISSK--------------KKKSNVTLSGLLNCIGGLWSTCGGERIIV 308 (431)
Q Consensus 255 ------------i~~l~~~~~~~~~~l~~l~~~~~~~--------------~~~~~~~~s~lL~~ldg~~~~~~~~~ivI 308 (431)
++.++..+-...+.+++++....-. +.-+....+.||..|+.. .+.+.+|
T Consensus 78 ~C~~i~~g~~~d~~eidaas~~~v~~iR~l~~~~~~~p~~~~~kV~iIDE~~~ls~~a~naLLk~LEep----p~~~~fI 153 (509)
T PRK14958 78 NCREIDEGRFPDLFEVDAASRTKVEDTRELLDNIPYAPTKGRFKVYLIDEVHMLSGHSFNALLKTLEEP----PSHVKFI 153 (509)
T ss_pred HHHHHhcCCCceEEEEcccccCCHHHHHHHHHHHhhccccCCcEEEEEEChHhcCHHHHHHHHHHHhcc----CCCeEEE
Confidence 6667766545566777776543321 333456788899988854 3458888
Q ss_pred EecCCCCCCChhhhccCceeEEEEcCCCCHHHHHHHHHHhhc
Q 035603 309 FTTNHVDKLDPALIRRGRMDKHIEMPYCCFEAFKVLAKNYLE 350 (431)
Q Consensus 309 ~TTN~~~~Ld~AllRpGRfd~~I~~~~p~~~~r~~i~~~~l~ 350 (431)
++|+.+.++.+.++. |. ..++|..++.++....++..+.
T Consensus 154 lattd~~kl~~tI~S--Rc-~~~~f~~l~~~~i~~~l~~il~ 192 (509)
T PRK14958 154 LATTDHHKLPVTVLS--RC-LQFHLAQLPPLQIAAHCQHLLK 192 (509)
T ss_pred EEECChHhchHHHHH--Hh-hhhhcCCCCHHHHHHHHHHHHH
Confidence 888999999999988 44 6678888888776666655554
No 63
>PRK05563 DNA polymerase III subunits gamma and tau; Validated
Probab=99.50 E-value=5.3e-13 Score=142.11 Aligned_cols=145 Identities=21% Similarity=0.356 Sum_probs=109.6
Q ss_pred CCCCccccccChhhHHHHHHHHHHHHhCHHHHHHhCCCCCceeEEeCCCCCcHHHHHHHHHHHcCC--------------
Q 035603 188 HPATFDTLAMASKKKEAIKKDLIKFTEGKEYYAKIGKAWKRGYLLFGPPGTGKSTMIAAMANCLNY-------------- 253 (431)
Q Consensus 188 ~p~~f~~l~g~~~~k~~i~~~l~~~~~~~~~~~~~g~~~~rg~LL~GPPGtGKTsla~aiA~~l~~-------------- 253 (431)
.|.+|++|+|.+.+++.|.+.+.. | ..+..||||||||||||++|+++|+.+++
T Consensus 11 rP~~f~~viGq~~v~~~L~~~i~~-----------~-~~~hayLf~Gp~GtGKTt~Ak~lAkal~c~~~~~~~pC~~C~~ 78 (559)
T PRK05563 11 RPQTFEDVVGQEHITKTLKNAIKQ-----------G-KISHAYLFSGPRGTGKTSAAKIFAKAVNCLNPPDGEPCNECEI 78 (559)
T ss_pred CCCcHHhccCcHHHHHHHHHHHHc-----------C-CCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCccHH
Confidence 699999999999998888765542 1 23568999999999999999999998763
Q ss_pred ----------CeEEecccCcCChHHHHHHHHHhhhc--------------ccchhhHHHHHHHHhcCcccCCCCceEEEE
Q 035603 254 ----------DVYDLELTSVENNNELRSLLVDISSK--------------KKKSNVTLSGLLNCIGGLWSTCGGERIIVF 309 (431)
Q Consensus 254 ----------~i~~l~~~~~~~~~~l~~l~~~~~~~--------------~~~~~~~~s~lL~~ldg~~~~~~~~~ivI~ 309 (431)
+++.++.++-.+.+.++.+....... +.-+....+.||..++.. ...+++|+
T Consensus 79 C~~i~~g~~~dv~eidaas~~~vd~ir~i~~~v~~~p~~~~~kViIIDE~~~Lt~~a~naLLKtLEep----p~~~ifIl 154 (559)
T PRK05563 79 CKAITNGSLMDVIEIDAASNNGVDEIRDIRDKVKYAPSEAKYKVYIIDEVHMLSTGAFNALLKTLEEP----PAHVIFIL 154 (559)
T ss_pred HHHHhcCCCCCeEEeeccccCCHHHHHHHHHHHhhCcccCCeEEEEEECcccCCHHHHHHHHHHhcCC----CCCeEEEE
Confidence 45666665544556677776554322 333456788899988854 34588888
Q ss_pred ecCCCCCCChhhhccCceeEEEEcCCCCHHHHHHHHHHhhch
Q 035603 310 TTNHVDKLDPALIRRGRMDKHIEMPYCCFEAFKVLAKNYLEI 351 (431)
Q Consensus 310 TTN~~~~Ld~AllRpGRfd~~I~~~~p~~~~r~~i~~~~l~~ 351 (431)
+|+.++.|++++++ |. ..++|+.|+.++....++..+..
T Consensus 155 att~~~ki~~tI~S--Rc-~~~~f~~~~~~ei~~~L~~i~~~ 193 (559)
T PRK05563 155 ATTEPHKIPATILS--RC-QRFDFKRISVEDIVERLKYILDK 193 (559)
T ss_pred EeCChhhCcHHHHh--Hh-eEEecCCCCHHHHHHHHHHHHHH
Confidence 88899999999998 55 46889999998888877776643
No 64
>PHA02544 44 clamp loader, small subunit; Provisional
Probab=99.50 E-value=7.6e-13 Score=131.43 Aligned_cols=149 Identities=19% Similarity=0.187 Sum_probs=105.7
Q ss_pred CcceeeeccCCCCccccccChhhHHHHHHHHHHHHhCHHHHHHhCCCCCceeEEeCCCCCcHHHHHHHHHHHcCCCeEEe
Q 035603 179 KKWSHVYFEHPATFDTLAMASKKKEAIKKDLIKFTEGKEYYAKIGKAWKRGYLLFGPPGTGKSTMIAAMANCLNYDVYDL 258 (431)
Q Consensus 179 ~~w~~~~~~~p~~f~~l~g~~~~k~~i~~~l~~~~~~~~~~~~~g~~~~rg~LL~GPPGtGKTsla~aiA~~l~~~i~~l 258 (431)
-.|. ..-.|.+|++++|.+++++.+...+. .| ..+..+||+||||+|||++++++|++++.+++.+
T Consensus 9 ~~w~--~kyrP~~~~~~~~~~~~~~~l~~~~~-----------~~-~~~~~lll~G~~G~GKT~la~~l~~~~~~~~~~i 74 (316)
T PHA02544 9 FMWE--QKYRPSTIDECILPAADKETFKSIVK-----------KG-RIPNMLLHSPSPGTGKTTVAKALCNEVGAEVLFV 74 (316)
T ss_pred Ccce--eccCCCcHHHhcCcHHHHHHHHHHHh-----------cC-CCCeEEEeeCcCCCCHHHHHHHHHHHhCccceEe
Confidence 4575 55689999999999999888776553 12 2355778899999999999999999999999999
Q ss_pred cccCcCChHHHHHHHHHhh-------h-c----cc---c-hhhHHHHHHHHhcCcccCCCCceEEEEecCCCCCCChhhh
Q 035603 259 ELTSVENNNELRSLLVDIS-------S-K----KK---K-SNVTLSGLLNCIGGLWSTCGGERIIVFTTNHVDKLDPALI 322 (431)
Q Consensus 259 ~~~~~~~~~~l~~l~~~~~-------~-~----~~---~-~~~~~s~lL~~ldg~~~~~~~~~ivI~TTN~~~~Ld~All 322 (431)
+++. ...+.++..+.... . + ++ . .......|.+.++.. ...+.+|+|||.+..+++++.
T Consensus 75 ~~~~-~~~~~i~~~l~~~~~~~~~~~~~~vliiDe~d~l~~~~~~~~L~~~le~~----~~~~~~Ilt~n~~~~l~~~l~ 149 (316)
T PHA02544 75 NGSD-CRIDFVRNRLTRFASTVSLTGGGKVIIIDEFDRLGLADAQRHLRSFMEAY----SKNCSFIITANNKNGIIEPLR 149 (316)
T ss_pred ccCc-ccHHHHHHHHHHHHHhhcccCCCeEEEEECcccccCHHHHHHHHHHHHhc----CCCceEEEEcCChhhchHHHH
Confidence 9887 32333333221111 1 1 11 1 122334455556643 234788899999999999999
Q ss_pred ccCceeEEEEcCCCCHHHHHHHHHHhh
Q 035603 323 RRGRMDKHIEMPYCCFEAFKVLAKNYL 349 (431)
Q Consensus 323 RpGRfd~~I~~~~p~~~~r~~i~~~~l 349 (431)
+ |+. .+.++.|+.+++..+++.++
T Consensus 150 s--R~~-~i~~~~p~~~~~~~il~~~~ 173 (316)
T PHA02544 150 S--RCR-VIDFGVPTKEEQIEMMKQMI 173 (316)
T ss_pred h--hce-EEEeCCCCHHHHHHHHHHHH
Confidence 9 774 78999999999887776644
No 65
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=99.49 E-value=3.9e-13 Score=133.41 Aligned_cols=142 Identities=25% Similarity=0.356 Sum_probs=101.1
Q ss_pred CCCCccccccChhhHHHHHHHHHHHHhCHHHHHHhCCCCCceeEEeCCCCCcHHHHHHHHHHHcCCCeEEecccCcCChH
Q 035603 188 HPATFDTLAMASKKKEAIKKDLIKFTEGKEYYAKIGKAWKRGYLLFGPPGTGKSTMIAAMANCLNYDVYDLELTSVENNN 267 (431)
Q Consensus 188 ~p~~f~~l~g~~~~k~~i~~~l~~~~~~~~~~~~~g~~~~rg~LL~GPPGtGKTsla~aiA~~l~~~i~~l~~~~~~~~~ 267 (431)
.|.++++++|++.+...- .-+...+. ...-.+.+|||||||||||+|+.||+..+++|..++...- +..
T Consensus 19 RP~~lde~vGQ~HLlg~~-~~lrr~v~---------~~~l~SmIl~GPPG~GKTTlA~liA~~~~~~f~~~sAv~~-gvk 87 (436)
T COG2256 19 RPKSLDEVVGQEHLLGEG-KPLRRAVE---------AGHLHSMILWGPPGTGKTTLARLIAGTTNAAFEALSAVTS-GVK 87 (436)
T ss_pred CCCCHHHhcChHhhhCCC-chHHHHHh---------cCCCceeEEECCCCCCHHHHHHHHHHhhCCceEEeccccc-cHH
Confidence 589999999998775331 11222222 1223479999999999999999999999999999987764 466
Q ss_pred HHHHHHHHhhhc--------------ccchhhHHHHHHHHhcCcccCCCCceEEEEec--CCCCCCChhhhccCceeEEE
Q 035603 268 ELRSLLVDISSK--------------KKKSNVTLSGLLNCIGGLWSTCGGERIIVFTT--NHVDKLDPALIRRGRMDKHI 331 (431)
Q Consensus 268 ~l~~l~~~~~~~--------------~~~~~~~~s~lL~~ldg~~~~~~~~~ivI~TT--N~~~~Ld~AllRpGRfd~~I 331 (431)
++++++..+... +...+.....||-.++ .+.+++|++| |..-.|.+||+.+. +..
T Consensus 88 dlr~i~e~a~~~~~~gr~tiLflDEIHRfnK~QQD~lLp~vE------~G~iilIGATTENPsF~ln~ALlSR~---~vf 158 (436)
T COG2256 88 DLREIIEEARKNRLLGRRTILFLDEIHRFNKAQQDALLPHVE------NGTIILIGATTENPSFELNPALLSRA---RVF 158 (436)
T ss_pred HHHHHHHHHHHHHhcCCceEEEEehhhhcChhhhhhhhhhhc------CCeEEEEeccCCCCCeeecHHHhhhh---hee
Confidence 799998887544 2333444455666654 1337777654 45569999999954 457
Q ss_pred EcCCCCHHHHHHHHHHhh
Q 035603 332 EMPYCCFEAFKVLAKNYL 349 (431)
Q Consensus 332 ~~~~p~~~~r~~i~~~~l 349 (431)
++...+.++.+.+++.-+
T Consensus 159 ~lk~L~~~di~~~l~ra~ 176 (436)
T COG2256 159 ELKPLSSEDIKKLLKRAL 176 (436)
T ss_pred eeecCCHHHHHHHHHHHH
Confidence 788888888888887743
No 66
>PRK07994 DNA polymerase III subunits gamma and tau; Validated
Probab=99.48 E-value=9.9e-13 Score=140.71 Aligned_cols=144 Identities=21% Similarity=0.302 Sum_probs=109.1
Q ss_pred CCCCccccccChhhHHHHHHHHHHHHhCHHHHHHhCCCCCceeEEeCCCCCcHHHHHHHHHHHcCC--------------
Q 035603 188 HPATFDTLAMASKKKEAIKKDLIKFTEGKEYYAKIGKAWKRGYLLFGPPGTGKSTMIAAMANCLNY-------------- 253 (431)
Q Consensus 188 ~p~~f~~l~g~~~~k~~i~~~l~~~~~~~~~~~~~g~~~~rg~LL~GPPGtGKTsla~aiA~~l~~-------------- 253 (431)
+|.+|++|+|.+.+++.|.+.+.. | ..+..|||+||||||||++|+++|+.+++
T Consensus 11 RP~~f~divGQe~vv~~L~~~l~~-----------~-rl~hAyLf~Gp~GvGKTTlAr~lAk~L~c~~~~~~~pCg~C~~ 78 (647)
T PRK07994 11 RPQTFAEVVGQEHVLTALANALDL-----------G-RLHHAYLFSGTRGVGKTTIARLLAKGLNCETGITATPCGECDN 78 (647)
T ss_pred CCCCHHHhcCcHHHHHHHHHHHHc-----------C-CCCeEEEEECCCCCCHHHHHHHHHHhhhhccCCCCCCCCCCHH
Confidence 689999999999998877654431 1 23567999999999999999999999877
Q ss_pred ----------CeEEecccCcCChHHHHHHHHHhhhc--------------ccchhhHHHHHHHHhcCcccCCCCceEEEE
Q 035603 254 ----------DVYDLELTSVENNNELRSLLVDISSK--------------KKKSNVTLSGLLNCIGGLWSTCGGERIIVF 309 (431)
Q Consensus 254 ----------~i~~l~~~~~~~~~~l~~l~~~~~~~--------------~~~~~~~~s~lL~~ldg~~~~~~~~~ivI~ 309 (431)
+++.++..+-...+.++++....... +.-+....+.||..|+. +.+.+++|+
T Consensus 79 C~~i~~g~~~D~ieidaas~~~VddiR~li~~~~~~p~~g~~KV~IIDEah~Ls~~a~NALLKtLEE----Pp~~v~FIL 154 (647)
T PRK07994 79 CREIEQGRFVDLIEIDAASRTKVEDTRELLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEE----PPEHVKFLL 154 (647)
T ss_pred HHHHHcCCCCCceeecccccCCHHHHHHHHHHHHhhhhcCCCEEEEEechHhCCHHHHHHHHHHHHc----CCCCeEEEE
Confidence 34555554323445677766543322 34456678899999884 345688888
Q ss_pred ecCCCCCCChhhhccCceeEEEEcCCCCHHHHHHHHHHhhc
Q 035603 310 TTNHVDKLDPALIRRGRMDKHIEMPYCCFEAFKVLAKNYLE 350 (431)
Q Consensus 310 TTN~~~~Ld~AllRpGRfd~~I~~~~p~~~~r~~i~~~~l~ 350 (431)
+|+.+..|.+.++. |. ..++|..++.++....+++.+.
T Consensus 155 ~Tt~~~kLl~TI~S--RC-~~~~f~~Ls~~ei~~~L~~il~ 192 (647)
T PRK07994 155 ATTDPQKLPVTILS--RC-LQFHLKALDVEQIRQQLEHILQ 192 (647)
T ss_pred ecCCccccchHHHh--hh-eEeeCCCCCHHHHHHHHHHHHH
Confidence 89999999999998 54 7899999999988888877663
No 67
>TIGR02397 dnaX_nterm DNA polymerase III, subunit gamma and tau. This model represents the well-conserved first ~ 365 amino acids of the translation of the dnaX gene. The full-length product of the dnaX gene in the model bacterium E. coli is the DNA polymerase III tau subunit. A translational frameshift leads to early termination and a truncated protein subunit gamma, about 1/3 shorter than tau and present in roughly equal amounts. This frameshift mechanism is not necessarily universal for species with DNA polymerase III but appears conserved in the exterme thermophile Thermus thermophilis.
Probab=99.48 E-value=1.1e-12 Score=132.28 Aligned_cols=147 Identities=20% Similarity=0.360 Sum_probs=107.2
Q ss_pred ccCCCCccccccChhhHHHHHHHHHHHHhCHHHHHHhCCCCCceeEEeCCCCCcHHHHHHHHHHHcCC------------
Q 035603 186 FEHPATFDTLAMASKKKEAIKKDLIKFTEGKEYYAKIGKAWKRGYLLFGPPGTGKSTMIAAMANCLNY------------ 253 (431)
Q Consensus 186 ~~~p~~f~~l~g~~~~k~~i~~~l~~~~~~~~~~~~~g~~~~rg~LL~GPPGtGKTsla~aiA~~l~~------------ 253 (431)
-..|.+|++++|.+++++.|.+.+.. | ..+..+|||||||+|||++|+++|..+.+
T Consensus 7 ~~rp~~~~~iig~~~~~~~l~~~~~~-----------~-~~~~~~Ll~G~~G~GKt~~a~~la~~l~~~~~~~~~~c~~c 74 (355)
T TIGR02397 7 KYRPQTFEDVIGQEHIVQTLKNAIKN-----------G-RIAHAYLFSGPRGTGKTSIARIFAKALNCQNGPDGEPCNEC 74 (355)
T ss_pred HhCCCcHhhccCcHHHHHHHHHHHHc-----------C-CCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCC
Confidence 34689999999999999888765531 2 23568999999999999999999998753
Q ss_pred ------------CeEEecccCcCChHHHHHHHHHhhhc--------------ccchhhHHHHHHHHhcCcccCCCCceEE
Q 035603 254 ------------DVYDLELTSVENNNELRSLLVDISSK--------------KKKSNVTLSGLLNCIGGLWSTCGGERII 307 (431)
Q Consensus 254 ------------~i~~l~~~~~~~~~~l~~l~~~~~~~--------------~~~~~~~~s~lL~~ldg~~~~~~~~~iv 307 (431)
+++.++.......+.+++++...... +.-.....+.||..++.. .+.+++
T Consensus 75 ~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~p~~~~~~vviidea~~l~~~~~~~Ll~~le~~----~~~~~l 150 (355)
T TIGR02397 75 ESCKEINSGSSLDVIEIDAASNNGVDDIREILDNVKYAPSSGKYKVYIIDEVHMLSKSAFNALLKTLEEP----PEHVVF 150 (355)
T ss_pred HHHHHHhcCCCCCEEEeeccccCCHHHHHHHHHHHhcCcccCCceEEEEeChhhcCHHHHHHHHHHHhCC----ccceeE
Confidence 34444444333344566666554332 122345677888888753 345788
Q ss_pred EEecCCCCCCChhhhccCceeEEEEcCCCCHHHHHHHHHHhhch
Q 035603 308 VFTTNHVDKLDPALIRRGRMDKHIEMPYCCFEAFKVLAKNYLEI 351 (431)
Q Consensus 308 I~TTN~~~~Ld~AllRpGRfd~~I~~~~p~~~~r~~i~~~~l~~ 351 (431)
|++||.++.|.+++.+ |+ ..+++++|+.++...+++.++..
T Consensus 151 Il~~~~~~~l~~~l~s--r~-~~~~~~~~~~~~l~~~l~~~~~~ 191 (355)
T TIGR02397 151 ILATTEPHKIPATILS--RC-QRFDFKRIPLEDIVERLKKILDK 191 (355)
T ss_pred EEEeCCHHHHHHHHHh--he-eEEEcCCCCHHHHHHHHHHHHHH
Confidence 8889999999999988 66 57899999999998888877654
No 68
>PRK05896 DNA polymerase III subunits gamma and tau; Validated
Probab=99.48 E-value=1e-12 Score=139.00 Aligned_cols=146 Identities=18% Similarity=0.327 Sum_probs=106.0
Q ss_pred ccCCCCccccccChhhHHHHHHHHHHHHhCHHHHHHhCCCCCceeEEeCCCCCcHHHHHHHHHHHcCC------------
Q 035603 186 FEHPATFDTLAMASKKKEAIKKDLIKFTEGKEYYAKIGKAWKRGYLLFGPPGTGKSTMIAAMANCLNY------------ 253 (431)
Q Consensus 186 ~~~p~~f~~l~g~~~~k~~i~~~l~~~~~~~~~~~~~g~~~~rg~LL~GPPGtGKTsla~aiA~~l~~------------ 253 (431)
--+|.+|++|+|.+.+++.+.+.+. . | ..+.+|||+||||+|||++|+++|+.+.+
T Consensus 9 KyRP~~F~dIIGQe~iv~~L~~aI~----~-------~-rl~hA~Lf~GP~GvGKTTlA~~lAk~L~C~~~~~~~~Cg~C 76 (605)
T PRK05896 9 KYRPHNFKQIIGQELIKKILVNAIL----N-------N-KLTHAYIFSGPRGIGKTSIAKIFAKAINCLNPKDGDCCNSC 76 (605)
T ss_pred HhCCCCHHHhcCcHHHHHHHHHHHH----c-------C-CCCceEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCccc
Confidence 3479999999999999887765432 1 1 23478999999999999999999998864
Q ss_pred ------------CeEEecccCcCChHHHHHHHHHhhhc--------------ccchhhHHHHHHHHhcCcccCCCCceEE
Q 035603 254 ------------DVYDLELTSVENNNELRSLLVDISSK--------------KKKSNVTLSGLLNCIGGLWSTCGGERII 307 (431)
Q Consensus 254 ------------~i~~l~~~~~~~~~~l~~l~~~~~~~--------------~~~~~~~~s~lL~~ldg~~~~~~~~~iv 307 (431)
+++.++.++..+.+.++.+....... +.-+....+.||..|+.. ++..++
T Consensus 77 ~sCr~i~~~~h~DiieIdaas~igVd~IReIi~~~~~~P~~~~~KVIIIDEad~Lt~~A~NaLLKtLEEP----p~~tvf 152 (605)
T PRK05896 77 SVCESINTNQSVDIVELDAASNNGVDEIRNIIDNINYLPTTFKYKVYIIDEAHMLSTSAWNALLKTLEEP----PKHVVF 152 (605)
T ss_pred HHHHHHHcCCCCceEEeccccccCHHHHHHHHHHHHhchhhCCcEEEEEechHhCCHHHHHHHHHHHHhC----CCcEEE
Confidence 44555554433445677666443322 222344667888888853 445888
Q ss_pred EEecCCCCCCChhhhccCceeEEEEcCCCCHHHHHHHHHHhhc
Q 035603 308 VFTTNHVDKLDPALIRRGRMDKHIEMPYCCFEAFKVLAKNYLE 350 (431)
Q Consensus 308 I~TTN~~~~Ld~AllRpGRfd~~I~~~~p~~~~r~~i~~~~l~ 350 (431)
|++|+.+..|.+++++ |. ..++|+.++.++....++..+.
T Consensus 153 IL~Tt~~~KLl~TI~S--Rc-q~ieF~~Ls~~eL~~~L~~il~ 192 (605)
T PRK05896 153 IFATTEFQKIPLTIIS--RC-QRYNFKKLNNSELQELLKSIAK 192 (605)
T ss_pred EEECCChHhhhHHHHh--hh-hhcccCCCCHHHHHHHHHHHHH
Confidence 8888999999999998 55 4789999999888777776543
No 69
>PRK14951 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.48 E-value=9.1e-13 Score=140.65 Aligned_cols=146 Identities=20% Similarity=0.261 Sum_probs=108.0
Q ss_pred cCCCCccccccChhhHHHHHHHHHHHHhCHHHHHHhCCCCCceeEEeCCCCCcHHHHHHHHHHHcCC-------------
Q 035603 187 EHPATFDTLAMASKKKEAIKKDLIKFTEGKEYYAKIGKAWKRGYLLFGPPGTGKSTMIAAMANCLNY------------- 253 (431)
Q Consensus 187 ~~p~~f~~l~g~~~~k~~i~~~l~~~~~~~~~~~~~g~~~~rg~LL~GPPGtGKTsla~aiA~~l~~------------- 253 (431)
..|.+|++|+|++.+++.|.+.+. . | ..+..|||+||+|||||++|+++|+.+++
T Consensus 10 yRP~~f~dviGQe~vv~~L~~~l~----~-------~-rl~ha~Lf~Gp~GvGKTtlAr~lAk~LnC~~~~~~~~~~~~p 77 (618)
T PRK14951 10 YRPRSFSEMVGQEHVVQALTNALT----Q-------Q-RLHHAYLFTGTRGVGKTTVSRILAKSLNCQGPDGQGGITATP 77 (618)
T ss_pred HCCCCHHHhcCcHHHHHHHHHHHH----c-------C-CCCeEEEEECCCCCCHHHHHHHHHHHhcCCCcccccCCCCCC
Confidence 468999999999998887765432 1 1 23458999999999999999999999876
Q ss_pred ----------------CeEEecccCcCChHHHHHHHHHhhhc--------------ccchhhHHHHHHHHhcCcccCCCC
Q 035603 254 ----------------DVYDLELTSVENNNELRSLLVDISSK--------------KKKSNVTLSGLLNCIGGLWSTCGG 303 (431)
Q Consensus 254 ----------------~i~~l~~~~~~~~~~l~~l~~~~~~~--------------~~~~~~~~s~lL~~ldg~~~~~~~ 303 (431)
+++.++..+-.+.+.+++++...... +.-+....+.||..|+.. .+
T Consensus 78 Cg~C~~C~~i~~g~h~D~~eldaas~~~Vd~iReli~~~~~~p~~g~~KV~IIDEvh~Ls~~a~NaLLKtLEEP----P~ 153 (618)
T PRK14951 78 CGVCQACRDIDSGRFVDYTELDAASNRGVDEVQQLLEQAVYKPVQGRFKVFMIDEVHMLTNTAFNAMLKTLEEP----PE 153 (618)
T ss_pred CCccHHHHHHHcCCCCceeecCcccccCHHHHHHHHHHHHhCcccCCceEEEEEChhhCCHHHHHHHHHhcccC----CC
Confidence 34455554433456777777653322 344556788889888853 44
Q ss_pred ceEEEEecCCCCCCChhhhccCceeEEEEcCCCCHHHHHHHHHHhhch
Q 035603 304 ERIIVFTTNHVDKLDPALIRRGRMDKHIEMPYCCFEAFKVLAKNYLEI 351 (431)
Q Consensus 304 ~~ivI~TTN~~~~Ld~AllRpGRfd~~I~~~~p~~~~r~~i~~~~l~~ 351 (431)
.+++|++|+.+.++.+.++. |. ..++|..++.++....++..+..
T Consensus 154 ~~~fIL~Ttd~~kil~TIlS--Rc-~~~~f~~Ls~eei~~~L~~i~~~ 198 (618)
T PRK14951 154 YLKFVLATTDPQKVPVTVLS--RC-LQFNLRPMAPETVLEHLTQVLAA 198 (618)
T ss_pred CeEEEEEECCchhhhHHHHH--hc-eeeecCCCCHHHHHHHHHHHHHH
Confidence 57888888889999999988 44 78999999988888777766543
No 70
>PRK07133 DNA polymerase III subunits gamma and tau; Validated
Probab=99.47 E-value=1.1e-12 Score=141.07 Aligned_cols=147 Identities=21% Similarity=0.341 Sum_probs=107.0
Q ss_pred eccCCCCccccccChhhHHHHHHHHHHHHhCHHHHHHhCCCCCceeEEeCCCCCcHHHHHHHHHHHcCCC----------
Q 035603 185 YFEHPATFDTLAMASKKKEAIKKDLIKFTEGKEYYAKIGKAWKRGYLLFGPPGTGKSTMIAAMANCLNYD---------- 254 (431)
Q Consensus 185 ~~~~p~~f~~l~g~~~~k~~i~~~l~~~~~~~~~~~~~g~~~~rg~LL~GPPGtGKTsla~aiA~~l~~~---------- 254 (431)
.-.+|.+|++|+|++.+++.|...+.. | ..+.+||||||||||||++|+++|+.+.+.
T Consensus 10 ~KyRP~~f~dIiGQe~~v~~L~~aI~~-----------~-rl~HAYLF~GP~GtGKTt~AriLAk~LnC~~~~~~~~pC~ 77 (725)
T PRK07133 10 RKYRPKTFDDIVGQDHIVQTLKNIIKS-----------N-KISHAYLFSGPRGTGKTSVAKIFANALNCSHKTDLLEPCQ 77 (725)
T ss_pred HHhCCCCHHHhcCcHHHHHHHHHHHHc-----------C-CCCeEEEEECCCCCcHHHHHHHHHHHhcccccCCCCCchh
Confidence 345799999999999998887766531 1 245689999999999999999999988652
Q ss_pred -----------eEEecccCcCChHHHHHHHHHhhhc--------------ccchhhHHHHHHHHhcCcccCCCCceEEEE
Q 035603 255 -----------VYDLELTSVENNNELRSLLVDISSK--------------KKKSNVTLSGLLNCIGGLWSTCGGERIIVF 309 (431)
Q Consensus 255 -----------i~~l~~~~~~~~~~l~~l~~~~~~~--------------~~~~~~~~s~lL~~ldg~~~~~~~~~ivI~ 309 (431)
++.++..+-.+.+.++.+....... +.-+....+.||..|+.. ++.+++|+
T Consensus 78 ~C~~~~~~~~Dvieidaasn~~vd~IReLie~~~~~P~~g~~KV~IIDEa~~LT~~A~NALLKtLEEP----P~~tifIL 153 (725)
T PRK07133 78 ECIENVNNSLDIIEMDAASNNGVDEIRELIENVKNLPTQSKYKIYIIDEVHMLSKSAFNALLKTLEEP----PKHVIFIL 153 (725)
T ss_pred HHHHhhcCCCcEEEEeccccCCHHHHHHHHHHHHhchhcCCCEEEEEEChhhCCHHHHHHHHHHhhcC----CCceEEEE
Confidence 2333332222345577766554432 223445688899988853 44588888
Q ss_pred ecCCCCCCChhhhccCceeEEEEcCCCCHHHHHHHHHHhhc
Q 035603 310 TTNHVDKLDPALIRRGRMDKHIEMPYCCFEAFKVLAKNYLE 350 (431)
Q Consensus 310 TTN~~~~Ld~AllRpGRfd~~I~~~~p~~~~r~~i~~~~l~ 350 (431)
+|+.++.|++++++ |+ ..++|..++.++....+...+.
T Consensus 154 aTte~~KLl~TI~S--Rc-q~ieF~~L~~eeI~~~L~~il~ 191 (725)
T PRK07133 154 ATTEVHKIPLTILS--RV-QRFNFRRISEDEIVSRLEFILE 191 (725)
T ss_pred EcCChhhhhHHHHh--hc-eeEEccCCCHHHHHHHHHHHHH
Confidence 88999999999998 55 4899999998888777766543
No 71
>PRK14963 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.47 E-value=1.3e-12 Score=137.13 Aligned_cols=145 Identities=24% Similarity=0.378 Sum_probs=106.4
Q ss_pred cCCCCccccccChhhHHHHHHHHHHHHhCHHHHHHhCCCCCceeEEeCCCCCcHHHHHHHHHHHcCC-------------
Q 035603 187 EHPATFDTLAMASKKKEAIKKDLIKFTEGKEYYAKIGKAWKRGYLLFGPPGTGKSTMIAAMANCLNY------------- 253 (431)
Q Consensus 187 ~~p~~f~~l~g~~~~k~~i~~~l~~~~~~~~~~~~~g~~~~rg~LL~GPPGtGKTsla~aiA~~l~~------------- 253 (431)
-.|.+|++|+|++.+++.|...+.. + ..+..+|||||||||||++|+++|+.+.+
T Consensus 8 yRP~~~~dvvGq~~v~~~L~~~i~~-----------~-~l~ha~Lf~GppGtGKTTlA~~lA~~l~c~~~~~~~cg~C~s 75 (504)
T PRK14963 8 ARPITFDEVVGQEHVKEVLLAALRQ-----------G-RLGHAYLFSGPRGVGKTTTARLIAMAVNCSGEDPKPCGECES 75 (504)
T ss_pred hCCCCHHHhcChHHHHHHHHHHHHc-----------C-CCCeEEEEECCCCCCHHHHHHHHHHHHhccCCCCCCCCcChh
Confidence 3799999999999998887665542 1 23456899999999999999999998864
Q ss_pred ----------CeEEecccCcCChHHHHHHHHHhhhc--------------ccchhhHHHHHHHHhcCcccCCCCceEEEE
Q 035603 254 ----------DVYDLELTSVENNNELRSLLVDISSK--------------KKKSNVTLSGLLNCIGGLWSTCGGERIIVF 309 (431)
Q Consensus 254 ----------~i~~l~~~~~~~~~~l~~l~~~~~~~--------------~~~~~~~~s~lL~~ldg~~~~~~~~~ivI~ 309 (431)
+++.++..+..+.+.++.+....... +..+...++.||..++.. ...+++|+
T Consensus 76 c~~i~~~~h~dv~el~~~~~~~vd~iR~l~~~~~~~p~~~~~kVVIIDEad~ls~~a~naLLk~LEep----~~~t~~Il 151 (504)
T PRK14963 76 CLAVRRGAHPDVLEIDAASNNSVEDVRDLREKVLLAPLRGGRKVYILDEAHMMSKSAFNALLKTLEEP----PEHVIFIL 151 (504)
T ss_pred hHHHhcCCCCceEEecccccCCHHHHHHHHHHHhhccccCCCeEEEEECccccCHHHHHHHHHHHHhC----CCCEEEEE
Confidence 25556655433445566654333221 233455678888888753 34578888
Q ss_pred ecCCCCCCChhhhccCceeEEEEcCCCCHHHHHHHHHHhhc
Q 035603 310 TTNHVDKLDPALIRRGRMDKHIEMPYCCFEAFKVLAKNYLE 350 (431)
Q Consensus 310 TTN~~~~Ld~AllRpGRfd~~I~~~~p~~~~r~~i~~~~l~ 350 (431)
+||.+..+++++.+ |. .+++|+.++.++....++..+.
T Consensus 152 ~t~~~~kl~~~I~S--Rc-~~~~f~~ls~~el~~~L~~i~~ 189 (504)
T PRK14963 152 ATTEPEKMPPTILS--RT-QHFRFRRLTEEEIAGKLRRLLE 189 (504)
T ss_pred EcCChhhCChHHhc--ce-EEEEecCCCHHHHHHHHHHHHH
Confidence 89999999999998 55 4799999999988888777654
No 72
>PRK14949 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.47 E-value=1.3e-12 Score=142.23 Aligned_cols=146 Identities=19% Similarity=0.291 Sum_probs=106.2
Q ss_pred cCCCCccccccChhhHHHHHHHHHHHHhCHHHHHHhCCCCCceeEEeCCCCCcHHHHHHHHHHHcCCC------------
Q 035603 187 EHPATFDTLAMASKKKEAIKKDLIKFTEGKEYYAKIGKAWKRGYLLFGPPGTGKSTMIAAMANCLNYD------------ 254 (431)
Q Consensus 187 ~~p~~f~~l~g~~~~k~~i~~~l~~~~~~~~~~~~~g~~~~rg~LL~GPPGtGKTsla~aiA~~l~~~------------ 254 (431)
-+|.+|++|+|.+.+++.|.+.+. . | ..+..|||+||||||||++|+++|+.+++.
T Consensus 10 yRP~tFddIIGQe~Iv~~LknaI~----~-------~-rl~HAyLFtGPpGtGKTTLARiLAk~Lnce~~~~~~pCg~C~ 77 (944)
T PRK14949 10 WRPATFEQMVGQSHVLHALTNALT----Q-------Q-RLHHAYLFTGTRGVGKTSLARLFAKGLNCEQGVTATPCGVCS 77 (944)
T ss_pred hCCCCHHHhcCcHHHHHHHHHHHH----h-------C-CCCeEEEEECCCCCCHHHHHHHHHHhccCccCCCCCCCCCch
Confidence 368999999999999888755432 1 1 235679999999999999999999999874
Q ss_pred ------------eEEecccCcCChHHHHHHHHHhhhc--------------ccchhhHHHHHHHHhcCcccCCCCceEEE
Q 035603 255 ------------VYDLELTSVENNNELRSLLVDISSK--------------KKKSNVTLSGLLNCIGGLWSTCGGERIIV 308 (431)
Q Consensus 255 ------------i~~l~~~~~~~~~~l~~l~~~~~~~--------------~~~~~~~~s~lL~~ldg~~~~~~~~~ivI 308 (431)
++.++..+....+.++.+....... +.-+....+.||..|+.. .+.+++|
T Consensus 78 sC~~i~~g~~~DviEidAas~~kVDdIReLie~v~~~P~~gk~KViIIDEAh~LT~eAqNALLKtLEEP----P~~vrFI 153 (944)
T PRK14949 78 SCVEIAQGRFVDLIEVDAASRTKVDDTRELLDNVQYRPSRGRFKVYLIDEVHMLSRSSFNALLKTLEEP----PEHVKFL 153 (944)
T ss_pred HHHHHhcCCCceEEEeccccccCHHHHHHHHHHHHhhhhcCCcEEEEEechHhcCHHHHHHHHHHHhcc----CCCeEEE
Confidence 1233333222345566665443221 334566788999999853 4457788
Q ss_pred EecCCCCCCChhhhccCceeEEEEcCCCCHHHHHHHHHHhhch
Q 035603 309 FTTNHVDKLDPALIRRGRMDKHIEMPYCCFEAFKVLAKNYLEI 351 (431)
Q Consensus 309 ~TTN~~~~Ld~AllRpGRfd~~I~~~~p~~~~r~~i~~~~l~~ 351 (431)
++||.+.+|.+.++. |. .+++|..++.++....+++.+..
T Consensus 154 LaTTe~~kLl~TIlS--RC-q~f~fkpLs~eEI~~~L~~il~~ 193 (944)
T PRK14949 154 LATTDPQKLPVTVLS--RC-LQFNLKSLTQDEIGTQLNHILTQ 193 (944)
T ss_pred EECCCchhchHHHHH--hh-eEEeCCCCCHHHHHHHHHHHHHH
Confidence 888889999999998 55 67999999999888888776644
No 73
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=99.47 E-value=6e-13 Score=142.09 Aligned_cols=172 Identities=17% Similarity=0.204 Sum_probs=117.8
Q ss_pred cCCCCccccccChhhHHHHHHHHHHHHhCHHHHHHhCCCCCceeEEeCCCCCcHHHHHHHHHHHcCCC------------
Q 035603 187 EHPATFDTLAMASKKKEAIKKDLIKFTEGKEYYAKIGKAWKRGYLLFGPPGTGKSTMIAAMANCLNYD------------ 254 (431)
Q Consensus 187 ~~p~~f~~l~g~~~~k~~i~~~l~~~~~~~~~~~~~g~~~~rg~LL~GPPGtGKTsla~aiA~~l~~~------------ 254 (431)
.+|.+|++|+|.+.+++.|...+.. ...+.+|||+||||||||++|+++|+.+++.
T Consensus 10 YRP~tFddIIGQe~vv~~L~~ai~~------------~rl~Ha~Lf~GP~GvGKTTlAriLAk~LnC~~~~~~~pCg~C~ 77 (709)
T PRK08691 10 WRPKTFADLVGQEHVVKALQNALDE------------GRLHHAYLLTGTRGVGKTTIARILAKSLNCENAQHGEPCGVCQ 77 (709)
T ss_pred hCCCCHHHHcCcHHHHHHHHHHHHc------------CCCCeEEEEECCCCCcHHHHHHHHHHHhcccCCCCCCCCcccH
Confidence 4699999999999999887765541 1235689999999999999999999988653
Q ss_pred ------------eEEecccCcCChHHHHHHHHHhhhc--------------ccchhhHHHHHHHHhcCcccCCCCceEEE
Q 035603 255 ------------VYDLELTSVENNNELRSLLVDISSK--------------KKKSNVTLSGLLNCIGGLWSTCGGERIIV 308 (431)
Q Consensus 255 ------------i~~l~~~~~~~~~~l~~l~~~~~~~--------------~~~~~~~~s~lL~~ldg~~~~~~~~~ivI 308 (431)
++.++..+-...+.+++++...... +..+....+.||..|+.. .+.+.+|
T Consensus 78 sCr~i~~g~~~DvlEidaAs~~gVd~IRelle~a~~~P~~gk~KVIIIDEad~Ls~~A~NALLKtLEEP----p~~v~fI 153 (709)
T PRK08691 78 SCTQIDAGRYVDLLEIDAASNTGIDNIREVLENAQYAPTAGKYKVYIIDEVHMLSKSAFNAMLKTLEEP----PEHVKFI 153 (709)
T ss_pred HHHHHhccCccceEEEeccccCCHHHHHHHHHHHHhhhhhCCcEEEEEECccccCHHHHHHHHHHHHhC----CCCcEEE
Confidence 3444444333456677776543211 333455678899998853 3457888
Q ss_pred EecCCCCCCChhhhccCceeEEEEcCCCCHHHHHHHHHHhhchhcchh-HHHHHhHhccCCCCHHHHHHH
Q 035603 309 FTTNHVDKLDPALIRRGRMDKHIEMPYCCFEAFKVLAKNYLEIESHEL-FHEIGSLLGETDITPADVAEN 377 (431)
Q Consensus 309 ~TTN~~~~Ld~AllRpGRfd~~I~~~~p~~~~r~~i~~~~l~~~~~~~-~~~i~~l~~~~~~s~adI~~~ 377 (431)
++||.+.++.+.++. |+ ..+.|+.++.++....++..+....... ...+..+++..+-+..++..+
T Consensus 154 LaTtd~~kL~~TIrS--RC-~~f~f~~Ls~eeI~~~L~~Il~kEgi~id~eAL~~Ia~~A~GslRdAlnL 220 (709)
T PRK08691 154 LATTDPHKVPVTVLS--RC-LQFVLRNMTAQQVADHLAHVLDSEKIAYEPPALQLLGRAAAGSMRDALSL 220 (709)
T ss_pred EEeCCccccchHHHH--HH-hhhhcCCCCHHHHHHHHHHHHHHcCCCcCHHHHHHHHHHhCCCHHHHHHH
Confidence 999999999999987 65 6788889999988888877766443221 122333333334444444433
No 74
>PRK14952 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.46 E-value=1.8e-12 Score=137.75 Aligned_cols=146 Identities=23% Similarity=0.318 Sum_probs=107.6
Q ss_pred cCCCCccccccChhhHHHHHHHHHHHHhCHHHHHHhCCCCCceeEEeCCCCCcHHHHHHHHHHHcCC-------------
Q 035603 187 EHPATFDTLAMASKKKEAIKKDLIKFTEGKEYYAKIGKAWKRGYLLFGPPGTGKSTMIAAMANCLNY------------- 253 (431)
Q Consensus 187 ~~p~~f~~l~g~~~~k~~i~~~l~~~~~~~~~~~~~g~~~~rg~LL~GPPGtGKTsla~aiA~~l~~------------- 253 (431)
..|.+|++|+|++.+++.|...+. . | ..+..|||+||||||||++|+++|+.+++
T Consensus 7 yRP~~f~eivGq~~i~~~L~~~i~----~-------~-r~~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pCg~C~ 74 (584)
T PRK14952 7 YRPATFAEVVGQEHVTEPLSSALD----A-------G-RINHAYLFSGPRGCGKTSSARILARSLNCAQGPTATPCGVCE 74 (584)
T ss_pred hCCCcHHHhcCcHHHHHHHHHHHH----c-------C-CCCeEEEEECCCCCCHHHHHHHHHHHhccccCCCCCcccccH
Confidence 379999999999999888766543 1 1 23457999999999999999999998774
Q ss_pred -------------CeEEecccCcCChHHHHHHHHHhhhc--------------ccchhhHHHHHHHHhcCcccCCCCceE
Q 035603 254 -------------DVYDLELTSVENNNELRSLLVDISSK--------------KKKSNVTLSGLLNCIGGLWSTCGGERI 306 (431)
Q Consensus 254 -------------~i~~l~~~~~~~~~~l~~l~~~~~~~--------------~~~~~~~~s~lL~~ldg~~~~~~~~~i 306 (431)
+++.++.++..+.+.++++....... +.-+....+.||..|+.. .+.++
T Consensus 75 ~C~~i~~~~~~~~dvieidaas~~gvd~iRel~~~~~~~P~~~~~KVvIIDEah~Lt~~A~NALLK~LEEp----p~~~~ 150 (584)
T PRK14952 75 SCVALAPNGPGSIDVVELDAASHGGVDDTRELRDRAFYAPAQSRYRIFIVDEAHMVTTAGFNALLKIVEEP----PEHLI 150 (584)
T ss_pred HHHHhhcccCCCceEEEeccccccCHHHHHHHHHHHHhhhhcCCceEEEEECCCcCCHHHHHHHHHHHhcC----CCCeE
Confidence 34455554444456666654433221 344566788899999853 44588
Q ss_pred EEEecCCCCCCChhhhccCceeEEEEcCCCCHHHHHHHHHHhhch
Q 035603 307 IVFTTNHVDKLDPALIRRGRMDKHIEMPYCCFEAFKVLAKNYLEI 351 (431)
Q Consensus 307 vI~TTN~~~~Ld~AllRpGRfd~~I~~~~p~~~~r~~i~~~~l~~ 351 (431)
+|++|+.+++|.++++. |. .+++|..++.++....+...+..
T Consensus 151 fIL~tte~~kll~TI~S--Rc-~~~~F~~l~~~~i~~~L~~i~~~ 192 (584)
T PRK14952 151 FIFATTEPEKVLPTIRS--RT-HHYPFRLLPPRTMRALIARICEQ 192 (584)
T ss_pred EEEEeCChHhhHHHHHH--hc-eEEEeeCCCHHHHHHHHHHHHHH
Confidence 99999999999999998 43 68999999988887777766543
No 75
>PRK07940 DNA polymerase III subunit delta'; Validated
Probab=99.46 E-value=3.5e-12 Score=130.15 Aligned_cols=147 Identities=17% Similarity=0.261 Sum_probs=105.8
Q ss_pred CccccccChhhHHHHHHHHHHHHhCHHHHHHhCCCCCceeEEeCCCCCcHHHHHHHHHHHcCCC----------------
Q 035603 191 TFDTLAMASKKKEAIKKDLIKFTEGKEYYAKIGKAWKRGYLLFGPPGTGKSTMIAAMANCLNYD---------------- 254 (431)
Q Consensus 191 ~f~~l~g~~~~k~~i~~~l~~~~~~~~~~~~~g~~~~rg~LL~GPPGtGKTsla~aiA~~l~~~---------------- 254 (431)
.|++|+|++.+++.|.+.+..... .+...+...+.+|||+||||+|||++|+++|..+.+.
T Consensus 3 ~f~~IiGq~~~~~~L~~~i~~~~~---~~~~~~~~l~ha~Lf~Gp~G~GKt~lA~~lA~~l~c~~~~~~~Cg~C~~C~~~ 79 (394)
T PRK07940 3 VWDDLVGQEAVVAELRAAARAARA---DVAAAGSGMTHAWLFTGPPGSGRSVAARAFAAALQCTDPDEPGCGECRACRTV 79 (394)
T ss_pred hhhhccChHHHHHHHHHHHHhccc---cccccCCCCCeEEEEECCCCCcHHHHHHHHHHHhCCCCCCCCCCCCCHHHHHH
Confidence 589999999999998887765443 2333455567899999999999999999999987653
Q ss_pred -------eEEecccCc-CChHHHHHHHHHhhhc--------------ccchhhHHHHHHHHhcCcccCCCCceEEEEecC
Q 035603 255 -------VYDLELTSV-ENNNELRSLLVDISSK--------------KKKSNVTLSGLLNCIGGLWSTCGGERIIVFTTN 312 (431)
Q Consensus 255 -------i~~l~~~~~-~~~~~l~~l~~~~~~~--------------~~~~~~~~s~lL~~ldg~~~~~~~~~ivI~TTN 312 (431)
++.+..... -..+++++++...... +.-.....+.||..|+.. ..+.++|++|+
T Consensus 80 ~~~~hpD~~~i~~~~~~i~i~~iR~l~~~~~~~p~~~~~kViiIDead~m~~~aanaLLk~LEep----~~~~~fIL~a~ 155 (394)
T PRK07940 80 LAGTHPDVRVVAPEGLSIGVDEVRELVTIAARRPSTGRWRIVVIEDADRLTERAANALLKAVEEP----PPRTVWLLCAP 155 (394)
T ss_pred hcCCCCCEEEeccccccCCHHHHHHHHHHHHhCcccCCcEEEEEechhhcCHHHHHHHHHHhhcC----CCCCeEEEEEC
Confidence 222322211 2345677777655432 223344567899988743 34477777777
Q ss_pred CCCCCChhhhccCceeEEEEcCCCCHHHHHHHHHH
Q 035603 313 HVDKLDPALIRRGRMDKHIEMPYCCFEAFKVLAKN 347 (431)
Q Consensus 313 ~~~~Ld~AllRpGRfd~~I~~~~p~~~~r~~i~~~ 347 (431)
+++.|+|++++ |. ..|.|+.|+.++....+..
T Consensus 156 ~~~~llpTIrS--Rc-~~i~f~~~~~~~i~~~L~~ 187 (394)
T PRK07940 156 SPEDVLPTIRS--RC-RHVALRTPSVEAVAEVLVR 187 (394)
T ss_pred ChHHChHHHHh--hC-eEEECCCCCHHHHHHHHHH
Confidence 79999999998 55 6899999999988777753
No 76
>PRK14969 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.45 E-value=9.1e-13 Score=139.39 Aligned_cols=144 Identities=19% Similarity=0.288 Sum_probs=106.9
Q ss_pred CCCCccccccChhhHHHHHHHHHHHHhCHHHHHHhCCCCCceeEEeCCCCCcHHHHHHHHHHHcCC--------------
Q 035603 188 HPATFDTLAMASKKKEAIKKDLIKFTEGKEYYAKIGKAWKRGYLLFGPPGTGKSTMIAAMANCLNY-------------- 253 (431)
Q Consensus 188 ~p~~f~~l~g~~~~k~~i~~~l~~~~~~~~~~~~~g~~~~rg~LL~GPPGtGKTsla~aiA~~l~~-------------- 253 (431)
.|.+|++|+|.+.+++.|...+.. -..+..|||+||||||||++|+++|+.+++
T Consensus 11 rP~~f~divGq~~v~~~L~~~i~~------------~~~~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pcg~C~~ 78 (527)
T PRK14969 11 RPKSFSELVGQEHVVRALTNALEQ------------QRLHHAYLFTGTRGVGKTTLARILAKSLNCETGVTATPCGVCSA 78 (527)
T ss_pred CCCcHHHhcCcHHHHHHHHHHHHc------------CCCCEEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCHH
Confidence 689999999999999887665431 123468999999999999999999999876
Q ss_pred ----------CeEEecccCcCChHHHHHHHHHhhhc--------------ccchhhHHHHHHHHhcCcccCCCCceEEEE
Q 035603 254 ----------DVYDLELTSVENNNELRSLLVDISSK--------------KKKSNVTLSGLLNCIGGLWSTCGGERIIVF 309 (431)
Q Consensus 254 ----------~i~~l~~~~~~~~~~l~~l~~~~~~~--------------~~~~~~~~s~lL~~ldg~~~~~~~~~ivI~ 309 (431)
+++.++.+.-...+.+++++...... +.-+....+.||..|+.. .+.+++|+
T Consensus 79 C~~i~~~~~~d~~ei~~~~~~~vd~ir~l~~~~~~~p~~~~~kVvIIDEad~ls~~a~naLLK~LEep----p~~~~fIL 154 (527)
T PRK14969 79 CLEIDSGRFVDLIEVDAASNTQVDAMRELLDNAQYAPTRGRFKVYIIDEVHMLSKSAFNAMLKTLEEP----PEHVKFIL 154 (527)
T ss_pred HHHHhcCCCCceeEeeccccCCHHHHHHHHHHHhhCcccCCceEEEEcCcccCCHHHHHHHHHHHhCC----CCCEEEEE
Confidence 34445544333456677776554322 333455678899999853 34578888
Q ss_pred ecCCCCCCChhhhccCceeEEEEcCCCCHHHHHHHHHHhhc
Q 035603 310 TTNHVDKLDPALIRRGRMDKHIEMPYCCFEAFKVLAKNYLE 350 (431)
Q Consensus 310 TTN~~~~Ld~AllRpGRfd~~I~~~~p~~~~r~~i~~~~l~ 350 (431)
+|+.++.+.+.++. |. ..++|..++.++....+...+.
T Consensus 155 ~t~d~~kil~tI~S--Rc-~~~~f~~l~~~~i~~~L~~il~ 192 (527)
T PRK14969 155 ATTDPQKIPVTVLS--RC-LQFNLKQMPPPLIVSHLQHILE 192 (527)
T ss_pred EeCChhhCchhHHH--HH-HHHhcCCCCHHHHHHHHHHHHH
Confidence 88889999988887 44 6799999999888877776664
No 77
>PLN03025 replication factor C subunit; Provisional
Probab=99.45 E-value=2e-12 Score=128.90 Aligned_cols=146 Identities=17% Similarity=0.182 Sum_probs=102.2
Q ss_pred eccCCCCccccccChhhHHHHHHHHHHHHhCHHHHHHhCCCCCceeEEeCCCCCcHHHHHHHHHHHcC-----CCeEEec
Q 035603 185 YFEHPATFDTLAMASKKKEAIKKDLIKFTEGKEYYAKIGKAWKRGYLLFGPPGTGKSTMIAAMANCLN-----YDVYDLE 259 (431)
Q Consensus 185 ~~~~p~~f~~l~g~~~~k~~i~~~l~~~~~~~~~~~~~g~~~~rg~LL~GPPGtGKTsla~aiA~~l~-----~~i~~l~ 259 (431)
..-.|.+|++++|++++.+.|...+ .. |. . ..+|||||||||||++|+++|+++. ..++.++
T Consensus 5 ~kyrP~~l~~~~g~~~~~~~L~~~~----~~-------~~-~-~~lll~Gp~G~GKTtla~~la~~l~~~~~~~~~~eln 71 (319)
T PLN03025 5 EKYRPTKLDDIVGNEDAVSRLQVIA----RD-------GN-M-PNLILSGPPGTGKTTSILALAHELLGPNYKEAVLELN 71 (319)
T ss_pred hhcCCCCHHHhcCcHHHHHHHHHHH----hc-------CC-C-ceEEEECCCCCCHHHHHHHHHHHHhcccCccceeeec
Confidence 4568999999999999887765432 21 11 1 2599999999999999999999973 2466677
Q ss_pred ccCcCChHHHHHHHHHhh--------h--c-------ccchhhHHHHHHHHhcCcccCCCCceEEEEecCCCCCCChhhh
Q 035603 260 LTSVENNNELRSLLVDIS--------S--K-------KKKSNVTLSGLLNCIGGLWSTCGGERIIVFTTNHVDKLDPALI 322 (431)
Q Consensus 260 ~~~~~~~~~l~~l~~~~~--------~--~-------~~~~~~~~s~lL~~ldg~~~~~~~~~ivI~TTN~~~~Ld~All 322 (431)
.++..+.+.++..+.... . + +.-.....+.|+..++.. +....+|++||.+..+.++|.
T Consensus 72 ~sd~~~~~~vr~~i~~~~~~~~~~~~~~~kviiiDE~d~lt~~aq~aL~~~lE~~----~~~t~~il~~n~~~~i~~~L~ 147 (319)
T PLN03025 72 ASDDRGIDVVRNKIKMFAQKKVTLPPGRHKIVILDEADSMTSGAQQALRRTMEIY----SNTTRFALACNTSSKIIEPIQ 147 (319)
T ss_pred ccccccHHHHHHHHHHHHhccccCCCCCeEEEEEechhhcCHHHHHHHHHHHhcc----cCCceEEEEeCCccccchhHH
Confidence 766555555555443211 1 1 223344566677777643 233567889999999999999
Q ss_pred ccCceeEEEEcCCCCHHHHHHHHHHhhc
Q 035603 323 RRGRMDKHIEMPYCCFEAFKVLAKNYLE 350 (431)
Q Consensus 323 RpGRfd~~I~~~~p~~~~r~~i~~~~l~ 350 (431)
+ |. ..++|+.|+.++....++....
T Consensus 148 S--Rc-~~i~f~~l~~~~l~~~L~~i~~ 172 (319)
T PLN03025 148 S--RC-AIVRFSRLSDQEILGRLMKVVE 172 (319)
T ss_pred H--hh-hcccCCCCCHHHHHHHHHHHHH
Confidence 8 54 5799999999888877776554
No 78
>PRK14957 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.44 E-value=2.9e-12 Score=135.14 Aligned_cols=145 Identities=20% Similarity=0.282 Sum_probs=104.7
Q ss_pred cCCCCccccccChhhHHHHHHHHHHHHhCHHHHHHhCCCCCceeEEeCCCCCcHHHHHHHHHHHcCC-------------
Q 035603 187 EHPATFDTLAMASKKKEAIKKDLIKFTEGKEYYAKIGKAWKRGYLLFGPPGTGKSTMIAAMANCLNY------------- 253 (431)
Q Consensus 187 ~~p~~f~~l~g~~~~k~~i~~~l~~~~~~~~~~~~~g~~~~rg~LL~GPPGtGKTsla~aiA~~l~~------------- 253 (431)
-.|.+|++|+|.+.+++.|...+. . | ..+..|||+||||||||++|+++|+.+++
T Consensus 10 yRP~~f~diiGq~~~v~~L~~~i~----~-------~-rl~ha~Lf~Gp~GvGKTTlAr~lAk~L~c~~~~~~~pCg~C~ 77 (546)
T PRK14957 10 YRPQSFAEVAGQQHALNSLVHALE----T-------Q-KVHHAYLFTGTRGVGKTTLGRLLAKCLNCKTGVTAEPCNKCE 77 (546)
T ss_pred HCcCcHHHhcCcHHHHHHHHHHHH----c-------C-CCCeEEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCcccH
Confidence 368999999999999888765442 1 1 23457999999999999999999998875
Q ss_pred -----------CeEEecccCcCChHHHHHHHHHhhhc--------------ccchhhHHHHHHHHhcCcccCCCCceEEE
Q 035603 254 -----------DVYDLELTSVENNNELRSLLVDISSK--------------KKKSNVTLSGLLNCIGGLWSTCGGERIIV 308 (431)
Q Consensus 254 -----------~i~~l~~~~~~~~~~l~~l~~~~~~~--------------~~~~~~~~s~lL~~ldg~~~~~~~~~ivI 308 (431)
+++.++.....+.++++.++...... +..+....+.||..|+.. ++.+++|
T Consensus 78 sC~~i~~~~~~dlieidaas~~gvd~ir~ii~~~~~~p~~g~~kViIIDEa~~ls~~a~naLLK~LEep----p~~v~fI 153 (546)
T PRK14957 78 NCVAINNNSFIDLIEIDAASRTGVEETKEILDNIQYMPSQGRYKVYLIDEVHMLSKQSFNALLKTLEEP----PEYVKFI 153 (546)
T ss_pred HHHHHhcCCCCceEEeecccccCHHHHHHHHHHHHhhhhcCCcEEEEEechhhccHHHHHHHHHHHhcC----CCCceEE
Confidence 45555553333345566665443322 333456778899998853 3457788
Q ss_pred EecCCCCCCChhhhccCceeEEEEcCCCCHHHHHHHHHHhhc
Q 035603 309 FTTNHVDKLDPALIRRGRMDKHIEMPYCCFEAFKVLAKNYLE 350 (431)
Q Consensus 309 ~TTN~~~~Ld~AllRpGRfd~~I~~~~p~~~~r~~i~~~~l~ 350 (431)
++|+.+..+.++++. |. ..++|..++.++....++..+.
T Consensus 154 L~Ttd~~kil~tI~S--Rc-~~~~f~~Ls~~eI~~~L~~il~ 192 (546)
T PRK14957 154 LATTDYHKIPVTILS--RC-IQLHLKHISQADIKDQLKIILA 192 (546)
T ss_pred EEECChhhhhhhHHH--he-eeEEeCCCCHHHHHHHHHHHHH
Confidence 887889999999888 44 7899999998887777666543
No 79
>PRK14965 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.44 E-value=1.9e-12 Score=138.45 Aligned_cols=144 Identities=17% Similarity=0.293 Sum_probs=106.3
Q ss_pred CCCCccccccChhhHHHHHHHHHHHHhCHHHHHHhCCCCCceeEEeCCCCCcHHHHHHHHHHHcCCC-------------
Q 035603 188 HPATFDTLAMASKKKEAIKKDLIKFTEGKEYYAKIGKAWKRGYLLFGPPGTGKSTMIAAMANCLNYD------------- 254 (431)
Q Consensus 188 ~p~~f~~l~g~~~~k~~i~~~l~~~~~~~~~~~~~g~~~~rg~LL~GPPGtGKTsla~aiA~~l~~~------------- 254 (431)
.|.+|++|+|.+++++.|.+.+.. | ..+..||||||||+|||++|+++|+.+++.
T Consensus 11 RP~~f~~iiGq~~v~~~L~~~i~~-----------~-~~~hayLf~Gp~G~GKtt~A~~lak~l~c~~~~~~~~c~~c~~ 78 (576)
T PRK14965 11 RPQTFSDLTGQEHVSRTLQNAIDT-----------G-RVAHAFLFTGARGVGKTSTARILAKALNCEQGLTAEPCNVCPP 78 (576)
T ss_pred CCCCHHHccCcHHHHHHHHHHHHc-----------C-CCCeEEEEECCCCCCHHHHHHHHHHhhcCCCCCCCCCCCccHH
Confidence 689999999999999888765531 1 245689999999999999999999998752
Q ss_pred -----------eEEecccCcCChHHHHHHHHHhhhc--------------ccchhhHHHHHHHHhcCcccCCCCceEEEE
Q 035603 255 -----------VYDLELTSVENNNELRSLLVDISSK--------------KKKSNVTLSGLLNCIGGLWSTCGGERIIVF 309 (431)
Q Consensus 255 -----------i~~l~~~~~~~~~~l~~l~~~~~~~--------------~~~~~~~~s~lL~~ldg~~~~~~~~~ivI~ 309 (431)
++.++..+....++++++....... +.-+....+.||..|+.. .+.+++|+
T Consensus 79 c~~i~~g~~~d~~eid~~s~~~v~~ir~l~~~~~~~p~~~~~KVvIIdev~~Lt~~a~naLLk~LEep----p~~~~fIl 154 (576)
T PRK14965 79 CVEITEGRSVDVFEIDGASNTGVDDIRELRENVKYLPSRSRYKIFIIDEVHMLSTNAFNALLKTLEEP----PPHVKFIF 154 (576)
T ss_pred HHHHhcCCCCCeeeeeccCccCHHHHHHHHHHHHhccccCCceEEEEEChhhCCHHHHHHHHHHHHcC----CCCeEEEE
Confidence 4445544433445677766543322 333456678899999853 45588999
Q ss_pred ecCCCCCCChhhhccCceeEEEEcCCCCHHHHHHHHHHhhc
Q 035603 310 TTNHVDKLDPALIRRGRMDKHIEMPYCCFEAFKVLAKNYLE 350 (431)
Q Consensus 310 TTN~~~~Ld~AllRpGRfd~~I~~~~p~~~~r~~i~~~~l~ 350 (431)
+||.+++|.+.++. |. ..++|..++.++....+...+.
T Consensus 155 ~t~~~~kl~~tI~S--Rc-~~~~f~~l~~~~i~~~L~~i~~ 192 (576)
T PRK14965 155 ATTEPHKVPITILS--RC-QRFDFRRIPLQKIVDRLRYIAD 192 (576)
T ss_pred EeCChhhhhHHHHH--hh-hhhhcCCCCHHHHHHHHHHHHH
Confidence 99999999999998 44 5788988888877766665543
No 80
>PRK14953 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.43 E-value=3.8e-12 Score=133.26 Aligned_cols=147 Identities=20% Similarity=0.300 Sum_probs=104.2
Q ss_pred ccCCCCccccccChhhHHHHHHHHHHHHhCHHHHHHhCCCCCceeEEeCCCCCcHHHHHHHHHHHcCC------------
Q 035603 186 FEHPATFDTLAMASKKKEAIKKDLIKFTEGKEYYAKIGKAWKRGYLLFGPPGTGKSTMIAAMANCLNY------------ 253 (431)
Q Consensus 186 ~~~p~~f~~l~g~~~~k~~i~~~l~~~~~~~~~~~~~g~~~~rg~LL~GPPGtGKTsla~aiA~~l~~------------ 253 (431)
...|.+|++++|.+.+.+.|.+.+.. ...+..||||||||+|||++|+++|..+++
T Consensus 9 kyRP~~f~diiGq~~i~~~L~~~i~~------------~~i~hayLf~Gp~G~GKTtlAr~lAk~L~c~~~~~~~pc~~c 76 (486)
T PRK14953 9 KYRPKFFKEVIGQEIVVRILKNAVKL------------QRVSHAYIFAGPRGTGKTTIARILAKVLNCLNPQEGEPCGKC 76 (486)
T ss_pred hhCCCcHHHccChHHHHHHHHHHHHc------------CCCCeEEEEECCCCCCHHHHHHHHHHHhcCcCCCCCCCCCcc
Confidence 34789999999999998887665521 123468999999999999999999998864
Q ss_pred ------------CeEEecccCcCChHHHHHHHHHhhhc--------------ccchhhHHHHHHHHhcCcccCCCCceEE
Q 035603 254 ------------DVYDLELTSVENNNELRSLLVDISSK--------------KKKSNVTLSGLLNCIGGLWSTCGGERII 307 (431)
Q Consensus 254 ------------~i~~l~~~~~~~~~~l~~l~~~~~~~--------------~~~~~~~~s~lL~~ldg~~~~~~~~~iv 307 (431)
+++.++.++..+.+.++.+....... +.-+....+.||..++.. ...+++
T Consensus 77 ~nc~~i~~g~~~d~~eidaas~~gvd~ir~I~~~~~~~P~~~~~KVvIIDEad~Lt~~a~naLLk~LEep----p~~~v~ 152 (486)
T PRK14953 77 ENCVEIDKGSFPDLIEIDAASNRGIDDIRALRDAVSYTPIKGKYKVYIIDEAHMLTKEAFNALLKTLEEP----PPRTIF 152 (486)
T ss_pred HHHHHHhcCCCCcEEEEeCccCCCHHHHHHHHHHHHhCcccCCeeEEEEEChhhcCHHHHHHHHHHHhcC----CCCeEE
Confidence 23444443333344555554333221 223345567888888753 334777
Q ss_pred EEecCCCCCCChhhhccCceeEEEEcCCCCHHHHHHHHHHhhch
Q 035603 308 VFTTNHVDKLDPALIRRGRMDKHIEMPYCCFEAFKVLAKNYLEI 351 (431)
Q Consensus 308 I~TTN~~~~Ld~AllRpGRfd~~I~~~~p~~~~r~~i~~~~l~~ 351 (431)
|++|+.++.+++++.+ |. ..+.|+.++.++....+...+..
T Consensus 153 Il~tt~~~kl~~tI~S--Rc-~~i~f~~ls~~el~~~L~~i~k~ 193 (486)
T PRK14953 153 ILCTTEYDKIPPTILS--RC-QRFIFSKPTKEQIKEYLKRICNE 193 (486)
T ss_pred EEEECCHHHHHHHHHH--hc-eEEEcCCCCHHHHHHHHHHHHHH
Confidence 7778888999999988 55 47999999999988888876653
No 81
>PRK07764 DNA polymerase III subunits gamma and tau; Validated
Probab=99.43 E-value=3.4e-12 Score=140.53 Aligned_cols=146 Identities=21% Similarity=0.259 Sum_probs=107.0
Q ss_pred ccCCCCccccccChhhHHHHHHHHHHHHhCHHHHHHhCCCCCceeEEeCCCCCcHHHHHHHHHHHcCC------------
Q 035603 186 FEHPATFDTLAMASKKKEAIKKDLIKFTEGKEYYAKIGKAWKRGYLLFGPPGTGKSTMIAAMANCLNY------------ 253 (431)
Q Consensus 186 ~~~p~~f~~l~g~~~~k~~i~~~l~~~~~~~~~~~~~g~~~~rg~LL~GPPGtGKTsla~aiA~~l~~------------ 253 (431)
...|.+|++|+|.+.+++.|...+.. | ..+..||||||+|||||++|++||+.|+|
T Consensus 8 KyRP~~f~eiiGqe~v~~~L~~~i~~-----------~-ri~Ha~Lf~Gp~G~GKTt~A~~lAr~L~C~~~~~~~pCg~C 75 (824)
T PRK07764 8 RYRPATFAEVIGQEHVTEPLSTALDS-----------G-RINHAYLFSGPRGCGKTSSARILARSLNCVEGPTSTPCGEC 75 (824)
T ss_pred HhCCCCHHHhcCcHHHHHHHHHHHHh-----------C-CCCceEEEECCCCCCHHHHHHHHHHHhCcccCCCCCCCccc
Confidence 34799999999999998887665431 1 13457999999999999999999999974
Q ss_pred --------------CeEEecccCcCChHHHHHHHHHhhhc--------------ccchhhHHHHHHHHhcCcccCCCCce
Q 035603 254 --------------DVYDLELTSVENNNELRSLLVDISSK--------------KKKSNVTLSGLLNCIGGLWSTCGGER 305 (431)
Q Consensus 254 --------------~i~~l~~~~~~~~~~l~~l~~~~~~~--------------~~~~~~~~s~lL~~ldg~~~~~~~~~ 305 (431)
+++.++..+....++++++....... +..+....+.||+.|+.. .+.+
T Consensus 76 ~sC~~~~~g~~~~~dv~eidaas~~~Vd~iR~l~~~~~~~p~~~~~KV~IIDEad~lt~~a~NaLLK~LEEp----P~~~ 151 (824)
T PRK07764 76 DSCVALAPGGPGSLDVTEIDAASHGGVDDARELRERAFFAPAESRYKIFIIDEAHMVTPQGFNALLKIVEEP----PEHL 151 (824)
T ss_pred HHHHHHHcCCCCCCcEEEecccccCCHHHHHHHHHHHHhchhcCCceEEEEechhhcCHHHHHHHHHHHhCC----CCCe
Confidence 24445544333455666654332211 344556778899999864 3458
Q ss_pred EEEEecCCCCCCChhhhccCceeEEEEcCCCCHHHHHHHHHHhhc
Q 035603 306 IIVFTTNHVDKLDPALIRRGRMDKHIEMPYCCFEAFKVLAKNYLE 350 (431)
Q Consensus 306 ivI~TTN~~~~Ld~AllRpGRfd~~I~~~~p~~~~r~~i~~~~l~ 350 (431)
++|++||.+++|.++|+. |. .+++|..++.+....+++..+.
T Consensus 152 ~fIl~tt~~~kLl~TIrS--Rc-~~v~F~~l~~~~l~~~L~~il~ 193 (824)
T PRK07764 152 KFIFATTEPDKVIGTIRS--RT-HHYPFRLVPPEVMRGYLERICA 193 (824)
T ss_pred EEEEEeCChhhhhHHHHh--he-eEEEeeCCCHHHHHHHHHHHHH
Confidence 889999999999999988 44 6889999988888877777653
No 82
>PRK14970 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.42 E-value=8.6e-12 Score=126.65 Aligned_cols=146 Identities=18% Similarity=0.318 Sum_probs=103.1
Q ss_pred ccCCCCccccccChhhHHHHHHHHHHHHhCHHHHHHhCCCCCceeEEeCCCCCcHHHHHHHHHHHcCC------------
Q 035603 186 FEHPATFDTLAMASKKKEAIKKDLIKFTEGKEYYAKIGKAWKRGYLLFGPPGTGKSTMIAAMANCLNY------------ 253 (431)
Q Consensus 186 ~~~p~~f~~l~g~~~~k~~i~~~l~~~~~~~~~~~~~g~~~~rg~LL~GPPGtGKTsla~aiA~~l~~------------ 253 (431)
--+|.+|++|+|.+.+++.+.+.+.. | ..+.+||||||||+|||++++++|+.+..
T Consensus 10 k~rP~~~~~iig~~~~~~~l~~~i~~-----------~-~~~~~~L~~G~~G~GKt~~a~~la~~l~~~~~~~~~~~~~~ 77 (367)
T PRK14970 10 KYRPQTFDDVVGQSHITNTLLNAIEN-----------N-HLAQALLFCGPRGVGKTTCARILARKINQPGYDDPNEDFSF 77 (367)
T ss_pred HHCCCcHHhcCCcHHHHHHHHHHHHc-----------C-CCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCc
Confidence 34799999999999988877665532 1 23568999999999999999999998754
Q ss_pred CeEEecccCcCChHHHHHHHHHhhhc--------------ccchhhHHHHHHHHhcCcccCCCCceEEEEecCCCCCCCh
Q 035603 254 DVYDLELTSVENNNELRSLLVDISSK--------------KKKSNVTLSGLLNCIGGLWSTCGGERIIVFTTNHVDKLDP 319 (431)
Q Consensus 254 ~i~~l~~~~~~~~~~l~~l~~~~~~~--------------~~~~~~~~s~lL~~ldg~~~~~~~~~ivI~TTN~~~~Ld~ 319 (431)
+++.++.....+.+.+++++..+... +.......+.|+..++.. +...++|++||.+..+.+
T Consensus 78 ~~~~l~~~~~~~~~~i~~l~~~~~~~p~~~~~kiviIDE~~~l~~~~~~~ll~~le~~----~~~~~~Il~~~~~~kl~~ 153 (367)
T PRK14970 78 NIFELDAASNNSVDDIRNLIDQVRIPPQTGKYKIYIIDEVHMLSSAAFNAFLKTLEEP----PAHAIFILATTEKHKIIP 153 (367)
T ss_pred ceEEeccccCCCHHHHHHHHHHHhhccccCCcEEEEEeChhhcCHHHHHHHHHHHhCC----CCceEEEEEeCCcccCCH
Confidence 23334433333346677777654321 122334567788888753 334678888888899999
Q ss_pred hhhccCceeEEEEcCCCCHHHHHHHHHHhhc
Q 035603 320 ALIRRGRMDKHIEMPYCCFEAFKVLAKNYLE 350 (431)
Q Consensus 320 AllRpGRfd~~I~~~~p~~~~r~~i~~~~l~ 350 (431)
++.+ |. ..++++.|+.++...++.....
T Consensus 154 ~l~s--r~-~~v~~~~~~~~~l~~~l~~~~~ 181 (367)
T PRK14970 154 TILS--RC-QIFDFKRITIKDIKEHLAGIAV 181 (367)
T ss_pred HHHh--cc-eeEecCCccHHHHHHHHHHHHH
Confidence 9988 44 3689999998887777766443
No 83
>PRK06647 DNA polymerase III subunits gamma and tau; Validated
Probab=99.42 E-value=3.5e-12 Score=135.56 Aligned_cols=145 Identities=24% Similarity=0.366 Sum_probs=104.8
Q ss_pred cCCCCccccccChhhHHHHHHHHHHHHhCHHHHHHhCCCCCceeEEeCCCCCcHHHHHHHHHHHcCC-------------
Q 035603 187 EHPATFDTLAMASKKKEAIKKDLIKFTEGKEYYAKIGKAWKRGYLLFGPPGTGKSTMIAAMANCLNY------------- 253 (431)
Q Consensus 187 ~~p~~f~~l~g~~~~k~~i~~~l~~~~~~~~~~~~~g~~~~rg~LL~GPPGtGKTsla~aiA~~l~~------------- 253 (431)
.+|.+|++|+|++.+++.|...+.. | ..+..||||||||+|||++|+++|+.+++
T Consensus 10 yRP~~f~diiGqe~iv~~L~~~i~~-----------~-~i~hayLf~Gp~G~GKTt~Ar~lAk~L~c~~~~~~~pC~~C~ 77 (563)
T PRK06647 10 RRPRDFNSLEGQDFVVETLKHSIES-----------N-KIANAYIFSGPRGVGKTSSARAFARCLNCVNGPTPMPCGECS 77 (563)
T ss_pred hCCCCHHHccCcHHHHHHHHHHHHc-----------C-CCCeEEEEECCCCCCHHHHHHHHHHhhccccCCCCCCCccch
Confidence 3699999999999999987765531 1 23568999999999999999999999875
Q ss_pred -----------CeEEecccCcCChHHHHHHHHHhhhc--------------ccchhhHHHHHHHHhcCcccCCCCceEEE
Q 035603 254 -----------DVYDLELTSVENNNELRSLLVDISSK--------------KKKSNVTLSGLLNCIGGLWSTCGGERIIV 308 (431)
Q Consensus 254 -----------~i~~l~~~~~~~~~~l~~l~~~~~~~--------------~~~~~~~~s~lL~~ldg~~~~~~~~~ivI 308 (431)
+++.++...-..-+.++++....... +.-+....+.||..++. ++..+++|
T Consensus 78 ~C~~i~~~~~~dv~~idgas~~~vddIr~l~e~~~~~p~~~~~KVvIIDEa~~Ls~~a~naLLK~LEe----pp~~~vfI 153 (563)
T PRK06647 78 SCKSIDNDNSLDVIEIDGASNTSVQDVRQIKEEIMFPPASSRYRVYIIDEVHMLSNSAFNALLKTIEE----PPPYIVFI 153 (563)
T ss_pred HHHHHHcCCCCCeEEecCcccCCHHHHHHHHHHHHhchhcCCCEEEEEEChhhcCHHHHHHHHHhhcc----CCCCEEEE
Confidence 23444433322335566655332211 33345567889988884 34558888
Q ss_pred EecCCCCCCChhhhccCceeEEEEcCCCCHHHHHHHHHHhhc
Q 035603 309 FTTNHVDKLDPALIRRGRMDKHIEMPYCCFEAFKVLAKNYLE 350 (431)
Q Consensus 309 ~TTN~~~~Ld~AllRpGRfd~~I~~~~p~~~~r~~i~~~~l~ 350 (431)
++|+.+..|.++|.. |.. .++|..++.++...+++....
T Consensus 154 ~~tte~~kL~~tI~S--Rc~-~~~f~~l~~~el~~~L~~i~~ 192 (563)
T PRK06647 154 FATTEVHKLPATIKS--RCQ-HFNFRLLSLEKIYNMLKKVCL 192 (563)
T ss_pred EecCChHHhHHHHHH--hce-EEEecCCCHHHHHHHHHHHHH
Confidence 888889999999998 553 688999998888877776653
No 84
>COG2255 RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair]
Probab=99.42 E-value=1.8e-12 Score=123.40 Aligned_cols=154 Identities=20% Similarity=0.257 Sum_probs=117.3
Q ss_pred CCCCccccccChhhHHHHHHHHHHHHhCHHHHHHhCCCCCceeEEeCCCCCcHHHHHHHHHHHcCCCeEEecccCcCChH
Q 035603 188 HPATFDTLAMASKKKEAIKKDLIKFTEGKEYYAKIGKAWKRGYLLFGPPGTGKSTMIAAMANCLNYDVYDLELTSVENNN 267 (431)
Q Consensus 188 ~p~~f~~l~g~~~~k~~i~~~l~~~~~~~~~~~~~g~~~~rg~LL~GPPGtGKTsla~aiA~~l~~~i~~l~~~~~~~~~ 267 (431)
.|.+|++.+|++++|+.+.=.+..-.... ...-.+|||||||.||||||..||+++|.++-..+...++...
T Consensus 21 RP~~l~efiGQ~~vk~~L~ifI~AAk~r~--------e~lDHvLl~GPPGlGKTTLA~IIA~Emgvn~k~tsGp~leK~g 92 (332)
T COG2255 21 RPKTLDEFIGQEKVKEQLQIFIKAAKKRG--------EALDHVLLFGPPGLGKTTLAHIIANELGVNLKITSGPALEKPG 92 (332)
T ss_pred CcccHHHhcChHHHHHHHHHHHHHHHhcC--------CCcCeEEeeCCCCCcHHHHHHHHHHHhcCCeEecccccccChh
Confidence 58999999999999988755544433322 2335799999999999999999999999999999999998888
Q ss_pred HHHHHHHHhhhc--------ccchhhHHHHHHHHhcCcc--------cCCC------CceEEEEecCCCCCCChhhhccC
Q 035603 268 ELRSLLVDISSK--------KKKSNVTLSGLLNCIGGLW--------STCG------GERIIVFTTNHVDKLDPALIRRG 325 (431)
Q Consensus 268 ~l~~l~~~~~~~--------~~~~~~~~s~lL~~ldg~~--------~~~~------~~~ivI~TTN~~~~Ld~AllRpG 325 (431)
++..++...... +.-+...-.-|.-+|+.+. ++.. ...-+|++|.+...|...|..
T Consensus 93 DlaaiLt~Le~~DVLFIDEIHrl~~~vEE~LYpaMEDf~lDI~IG~gp~Arsv~ldLppFTLIGATTr~G~lt~PLrd-- 170 (332)
T COG2255 93 DLAAILTNLEEGDVLFIDEIHRLSPAVEEVLYPAMEDFRLDIIIGKGPAARSIRLDLPPFTLIGATTRAGMLTNPLRD-- 170 (332)
T ss_pred hHHHHHhcCCcCCeEEEehhhhcChhHHHHhhhhhhheeEEEEEccCCccceEeccCCCeeEeeeccccccccchhHH--
Confidence 888888765554 2333334444445554321 1100 124689999999999999998
Q ss_pred ceeEEEEcCCCCHHHHHHHHHHhhch
Q 035603 326 RMDKHIEMPYCCFEAFKVLAKNYLEI 351 (431)
Q Consensus 326 Rfd~~I~~~~p~~~~r~~i~~~~l~~ 351 (431)
||....++.+.+.++...|+++.-..
T Consensus 171 RFGi~~rlefY~~~eL~~Iv~r~a~~ 196 (332)
T COG2255 171 RFGIIQRLEFYTVEELEEIVKRSAKI 196 (332)
T ss_pred hcCCeeeeecCCHHHHHHHHHHHHHH
Confidence 99999999999999999998877543
No 85
>KOG0736 consensus Peroxisome assembly factor 2 containing the AAA+-type ATPase domain [Posttranslational modification, protein turnover, chaperones]
Probab=99.41 E-value=2.6e-12 Score=135.49 Aligned_cols=153 Identities=18% Similarity=0.229 Sum_probs=113.7
Q ss_pred CCCCCceeEEeCCCCCcHHHHHHHHHHHcCCCeEEecccCc------CChHHHHHHHHHhhhc-----------------
Q 035603 223 GKAWKRGYLLFGPPGTGKSTMIAAMANCLNYDVYDLELTSV------ENNNELRSLLVDISSK----------------- 279 (431)
Q Consensus 223 g~~~~rg~LL~GPPGtGKTsla~aiA~~l~~~i~~l~~~~~------~~~~~l~~l~~~~~~~----------------- 279 (431)
++...-.+||||+||||||+++++.|.++|.+++.+++.++ .++..+...|..+...
T Consensus 427 ~~~~~~~vLLhG~~g~GK~t~V~~vas~lg~h~~evdc~el~~~s~~~~etkl~~~f~~a~~~~pavifl~~~dvl~id~ 506 (953)
T KOG0736|consen 427 LLTLNPSVLLHGPPGSGKTTVVRAVASELGLHLLEVDCYELVAESASHTETKLQAIFSRARRCSPAVLFLRNLDVLGIDQ 506 (953)
T ss_pred ccccceEEEEeCCCCCChHHHHHHHHHHhCCceEeccHHHHhhcccchhHHHHHHHHHHHhhcCceEEEEeccceeeecC
Confidence 34445579999999999999999999999999999999876 2345677777766544
Q ss_pred ccc-hh---hHHHHHHHHhcCcccCCCCceEEEEecCCCCCCChhhhccCceeEEEEcCCCCHHHHHHHHHHhhchhcch
Q 035603 280 KKK-SN---VTLSGLLNCIGGLWSTCGGERIIVFTTNHVDKLDPALIRRGRMDKHIEMPYCCFEAFKVLAKNYLEIESHE 355 (431)
Q Consensus 280 ~~~-~~---~~~s~lL~~ldg~~~~~~~~~ivI~TTN~~~~Ld~AllRpGRfd~~I~~~~p~~~~r~~i~~~~l~~~~~~ 355 (431)
++. .. ..+..++. +|-.. .....+|+|+||+..+.|++.+.+ -|-..|.+|.|+.++|.++++.|+......
T Consensus 507 dgged~rl~~~i~~~ls-~e~~~-~~~~~~ivv~t~~s~~~lp~~i~~--~f~~ei~~~~lse~qRl~iLq~y~~~~~~n 582 (953)
T KOG0736|consen 507 DGGEDARLLKVIRHLLS-NEDFK-FSCPPVIVVATTSSIEDLPADIQS--LFLHEIEVPALSEEQRLEILQWYLNHLPLN 582 (953)
T ss_pred CCchhHHHHHHHHHHHh-ccccc-CCCCceEEEEeccccccCCHHHHH--hhhhhccCCCCCHHHHHHHHHHHHhccccc
Confidence 111 11 12333333 23222 234459999999999999999998 788899999999999999999998654433
Q ss_pred hHHHHHhHhcc-CCCCHHHHHHHhc
Q 035603 356 LFHEIGSLLGE-TDITPADVAENLM 379 (431)
Q Consensus 356 ~~~~i~~l~~~-~~~s~adI~~~l~ 379 (431)
.....+.++.. .||+.+|+..++.
T Consensus 583 ~~v~~k~~a~~t~gfs~~~L~~l~~ 607 (953)
T KOG0736|consen 583 QDVNLKQLARKTSGFSFGDLEALVA 607 (953)
T ss_pred hHHHHHHHHHhcCCCCHHHHHHHhc
Confidence 34445667764 4999999986655
No 86
>PRK14959 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.40 E-value=4.8e-12 Score=134.45 Aligned_cols=147 Identities=18% Similarity=0.245 Sum_probs=104.1
Q ss_pred eccCCCCccccccChhhHHHHHHHHHHHHhCHHHHHHhCCCCCceeEEeCCCCCcHHHHHHHHHHHcCCC----------
Q 035603 185 YFEHPATFDTLAMASKKKEAIKKDLIKFTEGKEYYAKIGKAWKRGYLLFGPPGTGKSTMIAAMANCLNYD---------- 254 (431)
Q Consensus 185 ~~~~p~~f~~l~g~~~~k~~i~~~l~~~~~~~~~~~~~g~~~~rg~LL~GPPGtGKTsla~aiA~~l~~~---------- 254 (431)
....|.+|++|+|++.+++.|...+. . | ..+..|||+||||||||++|+++|+.+.+.
T Consensus 8 ~KyRP~sf~dIiGQe~v~~~L~~ai~----~-------~-ri~ha~Lf~GPpG~GKTtiArilAk~L~C~~~~~~~pCg~ 75 (624)
T PRK14959 8 ARYRPQTFAEVAGQETVKAILSRAAQ----E-------N-RVAPAYLFSGTRGVGKTTIARIFAKALNCETAPTGEPCNT 75 (624)
T ss_pred HHhCCCCHHHhcCCHHHHHHHHHHHH----c-------C-CCCceEEEECCCCCCHHHHHHHHHHhccccCCCCCCCCcc
Confidence 34579999999999999887765443 1 1 123589999999999999999999999763
Q ss_pred --------------eEEecccCcCChHHHHHHHHHhhhc--------------ccchhhHHHHHHHHhcCcccCCCCceE
Q 035603 255 --------------VYDLELTSVENNNELRSLLVDISSK--------------KKKSNVTLSGLLNCIGGLWSTCGGERI 306 (431)
Q Consensus 255 --------------i~~l~~~~~~~~~~l~~l~~~~~~~--------------~~~~~~~~s~lL~~ldg~~~~~~~~~i 306 (431)
++.++...-...+.++.+....... +.-.....+.||..|+.. ...++
T Consensus 76 C~sC~~i~~g~hpDv~eId~a~~~~Id~iR~L~~~~~~~p~~g~~kVIIIDEad~Lt~~a~naLLk~LEEP----~~~~i 151 (624)
T PRK14959 76 CEQCRKVTQGMHVDVVEIDGASNRGIDDAKRLKEAIGYAPMEGRYKVFIIDEAHMLTREAFNALLKTLEEP----PARVT 151 (624)
T ss_pred cHHHHHHhcCCCCceEEEecccccCHHHHHHHHHHHHhhhhcCCceEEEEEChHhCCHHHHHHHHHHhhcc----CCCEE
Confidence 4555543322334555543222111 223345678889888853 34588
Q ss_pred EEEecCCCCCCChhhhccCceeEEEEcCCCCHHHHHHHHHHhhc
Q 035603 307 IVFTTNHVDKLDPALIRRGRMDKHIEMPYCCFEAFKVLAKNYLE 350 (431)
Q Consensus 307 vI~TTN~~~~Ld~AllRpGRfd~~I~~~~p~~~~r~~i~~~~l~ 350 (431)
+|++||.+..+.+.+++ |+ .+|+|+.++.++...+++..+.
T Consensus 152 fILaTt~~~kll~TI~S--Rc-q~i~F~pLs~~eL~~~L~~il~ 192 (624)
T PRK14959 152 FVLATTEPHKFPVTIVS--RC-QHFTFTRLSEAGLEAHLTKVLG 192 (624)
T ss_pred EEEecCChhhhhHHHHh--hh-hccccCCCCHHHHHHHHHHHHH
Confidence 99999999999999988 55 4789999998888877776554
No 87
>PRK09111 DNA polymerase III subunits gamma and tau; Validated
Probab=99.40 E-value=7.3e-12 Score=133.81 Aligned_cols=147 Identities=17% Similarity=0.299 Sum_probs=107.4
Q ss_pred ccCCCCccccccChhhHHHHHHHHHHHHhCHHHHHHhCCCCCceeEEeCCCCCcHHHHHHHHHHHcCCCe----------
Q 035603 186 FEHPATFDTLAMASKKKEAIKKDLIKFTEGKEYYAKIGKAWKRGYLLFGPPGTGKSTMIAAMANCLNYDV---------- 255 (431)
Q Consensus 186 ~~~p~~f~~l~g~~~~k~~i~~~l~~~~~~~~~~~~~g~~~~rg~LL~GPPGtGKTsla~aiA~~l~~~i---------- 255 (431)
...|.+|++|+|.+.+++.|.+.+. . | ..+.++|||||||+|||++|+++|+.+++..
T Consensus 17 KyRP~~f~dliGq~~~v~~L~~~~~---~--------g-ri~ha~L~~Gp~GvGKTt~Ar~lAk~L~c~~~~~~~~~~~~ 84 (598)
T PRK09111 17 KYRPQTFDDLIGQEAMVRTLTNAFE---T--------G-RIAQAFMLTGVRGVGKTTTARILARALNYEGPDGDGGPTID 84 (598)
T ss_pred hhCCCCHHHhcCcHHHHHHHHHHHH---c--------C-CCCceEEEECCCCCCHHHHHHHHHHhhCcCCccccCCCccc
Confidence 4578999999999999988766443 1 2 2356899999999999999999999987532
Q ss_pred -------------------EEecccCcCChHHHHHHHHHhhhc--------------ccchhhHHHHHHHHhcCcccCCC
Q 035603 256 -------------------YDLELTSVENNNELRSLLVDISSK--------------KKKSNVTLSGLLNCIGGLWSTCG 302 (431)
Q Consensus 256 -------------------~~l~~~~~~~~~~l~~l~~~~~~~--------------~~~~~~~~s~lL~~ldg~~~~~~ 302 (431)
+.++..+..+.+.+++++...... +.-+....+.||..|+.. .
T Consensus 85 ~cg~c~~C~~i~~g~h~Dv~e~~a~s~~gvd~IReIie~~~~~P~~a~~KVvIIDEad~Ls~~a~naLLKtLEeP----p 160 (598)
T PRK09111 85 LCGVGEHCQAIMEGRHVDVLEMDAASHTGVDDIREIIESVRYRPVSARYKVYIIDEVHMLSTAAFNALLKTLEEP----P 160 (598)
T ss_pred cCcccHHHHHHhcCCCCceEEecccccCCHHHHHHHHHHHHhchhcCCcEEEEEEChHhCCHHHHHHHHHHHHhC----C
Confidence 233333323446677776554322 233455688899988853 4
Q ss_pred CceEEEEecCCCCCCChhhhccCceeEEEEcCCCCHHHHHHHHHHhhch
Q 035603 303 GERIIVFTTNHVDKLDPALIRRGRMDKHIEMPYCCFEAFKVLAKNYLEI 351 (431)
Q Consensus 303 ~~~ivI~TTN~~~~Ld~AllRpGRfd~~I~~~~p~~~~r~~i~~~~l~~ 351 (431)
+.+++|++|+.++++.+.++. |. ..++|..++.++....++..+..
T Consensus 161 ~~~~fIl~tte~~kll~tI~S--Rc-q~~~f~~l~~~el~~~L~~i~~k 206 (598)
T PRK09111 161 PHVKFIFATTEIRKVPVTVLS--RC-QRFDLRRIEADVLAAHLSRIAAK 206 (598)
T ss_pred CCeEEEEEeCChhhhhHHHHh--he-eEEEecCCCHHHHHHHHHHHHHH
Confidence 458888888999999999987 54 57999999998888877776543
No 88
>PRK08451 DNA polymerase III subunits gamma and tau; Validated
Probab=99.40 E-value=1.1e-11 Score=130.36 Aligned_cols=146 Identities=19% Similarity=0.266 Sum_probs=107.7
Q ss_pred cCCCCccccccChhhHHHHHHHHHHHHhCHHHHHHhCCCCCceeEEeCCCCCcHHHHHHHHHHHcCC-------------
Q 035603 187 EHPATFDTLAMASKKKEAIKKDLIKFTEGKEYYAKIGKAWKRGYLLFGPPGTGKSTMIAAMANCLNY------------- 253 (431)
Q Consensus 187 ~~p~~f~~l~g~~~~k~~i~~~l~~~~~~~~~~~~~g~~~~rg~LL~GPPGtGKTsla~aiA~~l~~------------- 253 (431)
-+|.+|++|+|++.+++.|...+. . | ..+..||||||||+|||++|+++|+.+.+
T Consensus 8 yRP~~fdeiiGqe~v~~~L~~~I~----~-------g-rl~hayLf~Gp~G~GKTt~Ar~LAk~L~c~~~~~~~pC~~C~ 75 (535)
T PRK08451 8 YRPKHFDELIGQESVSKTLSLALD----N-------N-RLAHAYLFSGLRGSGKTSSARIFARALVCEQGPSSTPCDTCI 75 (535)
T ss_pred HCCCCHHHccCcHHHHHHHHHHHH----c-------C-CCCeeEEEECCCCCcHHHHHHHHHHHhcCCCCCCCCCCcccH
Confidence 468999999999999888776552 1 1 24568999999999999999999998742
Q ss_pred -----------CeEEecccCcCChHHHHHHHHHhhhc--------------ccchhhHHHHHHHHhcCcccCCCCceEEE
Q 035603 254 -----------DVYDLELTSVENNNELRSLLVDISSK--------------KKKSNVTLSGLLNCIGGLWSTCGGERIIV 308 (431)
Q Consensus 254 -----------~i~~l~~~~~~~~~~l~~l~~~~~~~--------------~~~~~~~~s~lL~~ldg~~~~~~~~~ivI 308 (431)
+++.++.++-.+-+.++.+....... +.-+....+.||..|+.. +..+.+|
T Consensus 76 ~C~~~~~~~h~dv~eldaas~~gId~IRelie~~~~~P~~~~~KVvIIDEad~Lt~~A~NALLK~LEEp----p~~t~FI 151 (535)
T PRK08451 76 QCQSALENRHIDIIEMDAASNRGIDDIRELIEQTKYKPSMARFKIFIIDEVHMLTKEAFNALLKTLEEP----PSYVKFI 151 (535)
T ss_pred HHHHHhhcCCCeEEEeccccccCHHHHHHHHHHHhhCcccCCeEEEEEECcccCCHHHHHHHHHHHhhc----CCceEEE
Confidence 35555544323456777776543211 334566788899998854 3447788
Q ss_pred EecCCCCCCChhhhccCceeEEEEcCCCCHHHHHHHHHHhhch
Q 035603 309 FTTNHVDKLDPALIRRGRMDKHIEMPYCCFEAFKVLAKNYLEI 351 (431)
Q Consensus 309 ~TTN~~~~Ld~AllRpGRfd~~I~~~~p~~~~r~~i~~~~l~~ 351 (431)
++|+.+.+|.++++. |. .+++|..++.++....+...+..
T Consensus 152 L~ttd~~kL~~tI~S--Rc-~~~~F~~Ls~~ei~~~L~~Il~~ 191 (535)
T PRK08451 152 LATTDPLKLPATILS--RT-QHFRFKQIPQNSIISHLKTILEK 191 (535)
T ss_pred EEECChhhCchHHHh--hc-eeEEcCCCCHHHHHHHHHHHHHH
Confidence 888889999999998 53 68999999988887777766543
No 89
>PRK14954 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.40 E-value=1e-11 Score=133.02 Aligned_cols=144 Identities=16% Similarity=0.301 Sum_probs=101.7
Q ss_pred CCCCccccccChhhHHHHHHHHHHHHhCHHHHHHhCCCCCceeEEeCCCCCcHHHHHHHHHHHcCCC-------------
Q 035603 188 HPATFDTLAMASKKKEAIKKDLIKFTEGKEYYAKIGKAWKRGYLLFGPPGTGKSTMIAAMANCLNYD------------- 254 (431)
Q Consensus 188 ~p~~f~~l~g~~~~k~~i~~~l~~~~~~~~~~~~~g~~~~rg~LL~GPPGtGKTsla~aiA~~l~~~------------- 254 (431)
.|.+|++|+|++.+++.|...+. . -..+.+|||+||||||||++|+++|+.+.+.
T Consensus 11 RP~~f~eivGQe~i~~~L~~~i~----~--------~ri~ha~Lf~Gp~GvGKttlA~~lAk~L~c~~~~~~~~~~~~~~ 78 (620)
T PRK14954 11 RPSKFADITAQEHITHTIQNSLR----M--------DRVGHGYIFSGLRGVGKTTAARVFAKAVNCQRMIDDPVYLQEVT 78 (620)
T ss_pred CCCCHHHhcCcHHHHHHHHHHHH----c--------CCCCeeEEEECCCCCCHHHHHHHHHHHhCCCCcCCccccccccC
Confidence 68999999999999887755332 1 1345689999999999999999999999772
Q ss_pred -------------------eEEecccCcCChHHHHHHHHHhhhc--------------ccchhhHHHHHHHHhcCcccCC
Q 035603 255 -------------------VYDLELTSVENNNELRSLLVDISSK--------------KKKSNVTLSGLLNCIGGLWSTC 301 (431)
Q Consensus 255 -------------------i~~l~~~~~~~~~~l~~l~~~~~~~--------------~~~~~~~~s~lL~~ldg~~~~~ 301 (431)
++.++.......++++.+....... +.-+....+.||..|+..
T Consensus 79 ~~Cg~C~sC~~~~~g~~~n~~~~d~~s~~~vd~Ir~l~e~~~~~P~~~~~KVvIIdEad~Lt~~a~naLLK~LEeP---- 154 (620)
T PRK14954 79 EPCGECESCRDFDAGTSLNISEFDAASNNSVDDIRQLRENVRYGPQKGRYRVYIIDEVHMLSTAAFNAFLKTLEEP---- 154 (620)
T ss_pred CCCccCHHHHHHhccCCCCeEEecccccCCHHHHHHHHHHHHhhhhcCCCEEEEEeChhhcCHHHHHHHHHHHhCC----
Confidence 2223332222345677665444221 223344577889888854
Q ss_pred CCceEEEEecCCCCCCChhhhccCceeEEEEcCCCCHHHHHHHHHHhhc
Q 035603 302 GGERIIVFTTNHVDKLDPALIRRGRMDKHIEMPYCCFEAFKVLAKNYLE 350 (431)
Q Consensus 302 ~~~~ivI~TTN~~~~Ld~AllRpGRfd~~I~~~~p~~~~r~~i~~~~l~ 350 (431)
.+..++|++|+.+.+|.+++.++| ..|+|..++.++....+...+.
T Consensus 155 p~~tv~IL~t~~~~kLl~TI~SRc---~~vef~~l~~~ei~~~L~~i~~ 200 (620)
T PRK14954 155 PPHAIFIFATTELHKIPATIASRC---QRFNFKRIPLDEIQSQLQMICR 200 (620)
T ss_pred CCCeEEEEEeCChhhhhHHHHhhc---eEEecCCCCHHHHHHHHHHHHH
Confidence 344777778888899999999844 6899999998887766665543
No 90
>PRK14955 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.39 E-value=5.5e-12 Score=129.43 Aligned_cols=145 Identities=18% Similarity=0.307 Sum_probs=100.9
Q ss_pred cCCCCccccccChhhHHHHHHHHHHHHhCHHHHHHhCCCCCceeEEeCCCCCcHHHHHHHHHHHcCCC------------
Q 035603 187 EHPATFDTLAMASKKKEAIKKDLIKFTEGKEYYAKIGKAWKRGYLLFGPPGTGKSTMIAAMANCLNYD------------ 254 (431)
Q Consensus 187 ~~p~~f~~l~g~~~~k~~i~~~l~~~~~~~~~~~~~g~~~~rg~LL~GPPGtGKTsla~aiA~~l~~~------------ 254 (431)
-.|.+|++|+|++.+++.|...+. . | ..+.+||||||||+|||++|+++|+.+.+.
T Consensus 10 ~RP~~~~eiiGq~~~~~~L~~~~~----~-------~-~~~ha~lf~Gp~G~GKtt~A~~~a~~l~c~~~~~~~~~~~~~ 77 (397)
T PRK14955 10 YRPKKFADITAQEHITRTIQNSLR----M-------G-RVGHGYIFSGLRGVGKTTAARVFAKAVNCQRMIDDADYLQEV 77 (397)
T ss_pred cCCCcHhhccChHHHHHHHHHHHH----h-------C-CcceeEEEECCCCCCHHHHHHHHHHHhcCCCCcCcccccccC
Confidence 469999999999999887765443 1 2 235589999999999999999999998762
Q ss_pred --------------------eEEecccCcCChHHHHHHHHHhhhc--------------ccchhhHHHHHHHHhcCcccC
Q 035603 255 --------------------VYDLELTSVENNNELRSLLVDISSK--------------KKKSNVTLSGLLNCIGGLWST 300 (431)
Q Consensus 255 --------------------i~~l~~~~~~~~~~l~~l~~~~~~~--------------~~~~~~~~s~lL~~ldg~~~~ 300 (431)
++.++.......+.++++....... +.-+....+.||..++..
T Consensus 78 ~~~c~~c~~c~~~~~~~~~n~~~~~~~~~~~id~Ir~l~~~~~~~p~~~~~kvvIIdea~~l~~~~~~~LLk~LEep--- 154 (397)
T PRK14955 78 TEPCGECESCRDFDAGTSLNISEFDAASNNSVDDIRLLRENVRYGPQKGRYRVYIIDEVHMLSIAAFNAFLKTLEEP--- 154 (397)
T ss_pred CCCCCCCHHHHHHhcCCCCCeEeecccccCCHHHHHHHHHHHhhchhcCCeEEEEEeChhhCCHHHHHHHHHHHhcC---
Confidence 3333333322345666665444221 222334567788888743
Q ss_pred CCCceEEEEecCCCCCCChhhhccCceeEEEEcCCCCHHHHHHHHHHhhc
Q 035603 301 CGGERIIVFTTNHVDKLDPALIRRGRMDKHIEMPYCCFEAFKVLAKNYLE 350 (431)
Q Consensus 301 ~~~~~ivI~TTN~~~~Ld~AllRpGRfd~~I~~~~p~~~~r~~i~~~~l~ 350 (431)
.+..++|++|+.+..|-+++.+ |. ..++|+.++.++....+...+.
T Consensus 155 -~~~t~~Il~t~~~~kl~~tl~s--R~-~~v~f~~l~~~ei~~~l~~~~~ 200 (397)
T PRK14955 155 -PPHAIFIFATTELHKIPATIAS--RC-QRFNFKRIPLEEIQQQLQGICE 200 (397)
T ss_pred -CCCeEEEEEeCChHHhHHHHHH--HH-HHhhcCCCCHHHHHHHHHHHHH
Confidence 3447777788888899999988 44 3688999988887777666553
No 91
>PRK06305 DNA polymerase III subunits gamma and tau; Validated
Probab=99.39 E-value=1.4e-11 Score=128.13 Aligned_cols=145 Identities=18% Similarity=0.230 Sum_probs=101.1
Q ss_pred cCCCCccccccChhhHHHHHHHHHHHHhCHHHHHHhCCCCCceeEEeCCCCCcHHHHHHHHHHHcCC-------------
Q 035603 187 EHPATFDTLAMASKKKEAIKKDLIKFTEGKEYYAKIGKAWKRGYLLFGPPGTGKSTMIAAMANCLNY------------- 253 (431)
Q Consensus 187 ~~p~~f~~l~g~~~~k~~i~~~l~~~~~~~~~~~~~g~~~~rg~LL~GPPGtGKTsla~aiA~~l~~------------- 253 (431)
-.|.+|++|+|.+.+++.|.+.+.. | ..+..||||||||+|||++|+++|+.+.+
T Consensus 11 yRP~~~~diiGq~~~v~~L~~~i~~-----------~-~i~ha~Lf~Gp~G~GKtt~A~~lAk~l~c~~~~~~~~~c~~c 78 (451)
T PRK06305 11 YRPQTFSEILGQDAVVAVLKNALRF-----------N-RAAHAYLFSGIRGTGKTTLARIFAKALNCQNPTEDQEPCNQC 78 (451)
T ss_pred hCCCCHHHhcCcHHHHHHHHHHHHc-----------C-CCceEEEEEcCCCCCHHHHHHHHHHHhcCCCcccCCCCCccc
Confidence 3689999999999998877665431 1 24568999999999999999999998754
Q ss_pred ------------CeEEecccCcCChHHHHHHHHHhhh-----c---------ccchhhHHHHHHHHhcCcccCCCCceEE
Q 035603 254 ------------DVYDLELTSVENNNELRSLLVDISS-----K---------KKKSNVTLSGLLNCIGGLWSTCGGERII 307 (431)
Q Consensus 254 ------------~i~~l~~~~~~~~~~l~~l~~~~~~-----~---------~~~~~~~~s~lL~~ldg~~~~~~~~~iv 307 (431)
+++.++.....+.+.++.+...... . +.......+.||..|+.. .+.+++
T Consensus 79 ~~C~~i~~~~~~d~~~i~g~~~~gid~ir~i~~~l~~~~~~~~~kvvIIdead~lt~~~~n~LLk~lEep----~~~~~~ 154 (451)
T PRK06305 79 ASCKEISSGTSLDVLEIDGASHRGIEDIRQINETVLFTPSKSRYKIYIIDEVHMLTKEAFNSLLKTLEEP----PQHVKF 154 (451)
T ss_pred HHHHHHhcCCCCceEEeeccccCCHHHHHHHHHHHHhhhhcCCCEEEEEecHHhhCHHHHHHHHHHhhcC----CCCceE
Confidence 2444443322233455544322211 1 222334567788888853 345788
Q ss_pred EEecCCCCCCChhhhccCceeEEEEcCCCCHHHHHHHHHHhhc
Q 035603 308 VFTTNHVDKLDPALIRRGRMDKHIEMPYCCFEAFKVLAKNYLE 350 (431)
Q Consensus 308 I~TTN~~~~Ld~AllRpGRfd~~I~~~~p~~~~r~~i~~~~l~ 350 (431)
|++||.+..|.+++.+ |. ..++|+.++.++....+...+.
T Consensus 155 Il~t~~~~kl~~tI~s--Rc-~~v~f~~l~~~el~~~L~~~~~ 194 (451)
T PRK06305 155 FLATTEIHKIPGTILS--RC-QKMHLKRIPEETIIDKLALIAK 194 (451)
T ss_pred EEEeCChHhcchHHHH--hc-eEEeCCCCCHHHHHHHHHHHHH
Confidence 8888999999999998 55 4799999998887777666543
No 92
>KOG0989 consensus Replication factor C, subunit RFC4 [Replication, recombination and repair]
Probab=99.38 E-value=1.5e-12 Score=125.07 Aligned_cols=135 Identities=23% Similarity=0.336 Sum_probs=93.5
Q ss_pred eccCCCCccccccChhhHHHHHHHHHHHHhCHHHHHHhCCCCCceeEEeCCCCCcHHHHHHHHHHHcCC------CeEEe
Q 035603 185 YFEHPATFDTLAMASKKKEAIKKDLIKFTEGKEYYAKIGKAWKRGYLLFGPPGTGKSTMIAAMANCLNY------DVYDL 258 (431)
Q Consensus 185 ~~~~p~~f~~l~g~~~~k~~i~~~l~~~~~~~~~~~~~g~~~~rg~LL~GPPGtGKTsla~aiA~~l~~------~i~~l 258 (431)
....|.+|++++|++.+.+.|.+.+.. .. -..|||||||||||||.|+|+|.++.. .++.+
T Consensus 28 eKYrPkt~de~~gQe~vV~~L~~a~~~-~~------------lp~~LFyGPpGTGKTStalafar~L~~~~~~~~rvl~l 94 (346)
T KOG0989|consen 28 EKYRPKTFDELAGQEHVVQVLKNALLR-RI------------LPHYLFYGPPGTGKTSTALAFARALNCEQLFPCRVLEL 94 (346)
T ss_pred HHhCCCcHHhhcchHHHHHHHHHHHhh-cC------------CceEEeeCCCCCcHhHHHHHHHHHhcCccccccchhhh
Confidence 566899999999999999998877654 11 126999999999999999999999876 24445
Q ss_pred cccCcCChHHHH-------HHHHHhhhc----------------ccchhhHHHHHHHHhcCcccCCCCceEEEEecCCCC
Q 035603 259 ELTSVENNNELR-------SLLVDISSK----------------KKKSNVTLSGLLNCIGGLWSTCGGERIIVFTTNHVD 315 (431)
Q Consensus 259 ~~~~~~~~~~l~-------~l~~~~~~~----------------~~~~~~~~s~lL~~ldg~~~~~~~~~ivI~TTN~~~ 315 (431)
+.++-.+..-++ ++....... +.-.....+.|.+.|+.. ...+.+|+.||.++
T Consensus 95 naSderGisvvr~Kik~fakl~~~~~~~~~~~~~~fKiiIlDEcdsmtsdaq~aLrr~mE~~----s~~trFiLIcnyls 170 (346)
T KOG0989|consen 95 NASDERGISVVREKIKNFAKLTVLLKRSDGYPCPPFKIIILDECDSMTSDAQAALRRTMEDF----SRTTRFILICNYLS 170 (346)
T ss_pred cccccccccchhhhhcCHHHHhhccccccCCCCCcceEEEEechhhhhHHHHHHHHHHHhcc----ccceEEEEEcCChh
Confidence 555432222111 111111100 334456778899999964 23488999999999
Q ss_pred CCChhhhccCceeEEEEcCCCCHH
Q 035603 316 KLDPALIRRGRMDKHIEMPYCCFE 339 (431)
Q Consensus 316 ~Ld~AllRpGRfd~~I~~~~p~~~ 339 (431)
+|++.+.. |. .++.|+....+
T Consensus 171 rii~pi~S--RC-~KfrFk~L~d~ 191 (346)
T KOG0989|consen 171 RIIRPLVS--RC-QKFRFKKLKDE 191 (346)
T ss_pred hCChHHHh--hH-HHhcCCCcchH
Confidence 99999998 55 35566655443
No 93
>PRK13342 recombination factor protein RarA; Reviewed
Probab=99.38 E-value=9.1e-12 Score=128.50 Aligned_cols=141 Identities=23% Similarity=0.355 Sum_probs=101.1
Q ss_pred cCCCCccccccChhhHHH---HHHHHHHHHhCHHHHHHhCCCCCceeEEeCCCCCcHHHHHHHHHHHcCCCeEEecccCc
Q 035603 187 EHPATFDTLAMASKKKEA---IKKDLIKFTEGKEYYAKIGKAWKRGYLLFGPPGTGKSTMIAAMANCLNYDVYDLELTSV 263 (431)
Q Consensus 187 ~~p~~f~~l~g~~~~k~~---i~~~l~~~~~~~~~~~~~g~~~~rg~LL~GPPGtGKTsla~aiA~~l~~~i~~l~~~~~ 263 (431)
-+|.+|++++|.+++... |.+.+ .. ....++||+||||||||++|+++|+.++.+++.++....
T Consensus 6 ~RP~~l~d~vGq~~~v~~~~~L~~~i----~~---------~~~~~ilL~GppGtGKTtLA~~ia~~~~~~~~~l~a~~~ 72 (413)
T PRK13342 6 MRPKTLDEVVGQEHLLGPGKPLRRMI----EA---------GRLSSMILWGPPGTGKTTLARIIAGATDAPFEALSAVTS 72 (413)
T ss_pred hCCCCHHHhcCcHHHhCcchHHHHHH----Hc---------CCCceEEEECCCCCCHHHHHHHHHHHhCCCEEEEecccc
Confidence 478999999999888555 44433 21 123479999999999999999999999999999987654
Q ss_pred CChHHHHHHHHHhhhc--------------ccchhhHHHHHHHHhcCcccCCCCceEEEEec--CCCCCCChhhhccCce
Q 035603 264 ENNNELRSLLVDISSK--------------KKKSNVTLSGLLNCIGGLWSTCGGERIIVFTT--NHVDKLDPALIRRGRM 327 (431)
Q Consensus 264 ~~~~~l~~l~~~~~~~--------------~~~~~~~~s~lL~~ldg~~~~~~~~~ivI~TT--N~~~~Ld~AllRpGRf 327 (431)
+.+.++.++...... +.........|+..++. +.+++|++| |....++++|++ |+
T Consensus 73 -~~~~ir~ii~~~~~~~~~g~~~vL~IDEi~~l~~~~q~~LL~~le~------~~iilI~att~n~~~~l~~aL~S--R~ 143 (413)
T PRK13342 73 -GVKDLREVIEEARQRRSAGRRTILFIDEIHRFNKAQQDALLPHVED------GTITLIGATTENPSFEVNPALLS--RA 143 (413)
T ss_pred -cHHHHHHHHHHHHHhhhcCCceEEEEechhhhCHHHHHHHHHHhhc------CcEEEEEeCCCChhhhccHHHhc--cc
Confidence 345566666554321 12223345567777653 235666654 445689999999 77
Q ss_pred eEEEEcCCCCHHHHHHHHHHhhc
Q 035603 328 DKHIEMPYCCFEAFKVLAKNYLE 350 (431)
Q Consensus 328 d~~I~~~~p~~~~r~~i~~~~l~ 350 (431)
..+.++.++.++...+++..+.
T Consensus 144 -~~~~~~~ls~e~i~~lL~~~l~ 165 (413)
T PRK13342 144 -QVFELKPLSEEDIEQLLKRALE 165 (413)
T ss_pred -eeeEeCCCCHHHHHHHHHHHHH
Confidence 6789999999999988888764
No 94
>PRK14948 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.35 E-value=2.5e-11 Score=130.49 Aligned_cols=145 Identities=23% Similarity=0.334 Sum_probs=104.3
Q ss_pred ccCCCCccccccChhhHHHHHHHHHHHHhCHHHHHHhCCCCCceeEEeCCCCCcHHHHHHHHHHHcCC------------
Q 035603 186 FEHPATFDTLAMASKKKEAIKKDLIKFTEGKEYYAKIGKAWKRGYLLFGPPGTGKSTMIAAMANCLNY------------ 253 (431)
Q Consensus 186 ~~~p~~f~~l~g~~~~k~~i~~~l~~~~~~~~~~~~~g~~~~rg~LL~GPPGtGKTsla~aiA~~l~~------------ 253 (431)
...|.+|++|+|.+.+++.|...+.. | ....+||||||||||||++|+++|+.+++
T Consensus 9 kyRP~~f~~liGq~~i~~~L~~~l~~-----------~-rl~~a~Lf~Gp~G~GKttlA~~lAk~L~c~~~~~~~~~~Cg 76 (620)
T PRK14948 9 KYRPQRFDELVGQEAIATTLKNALIS-----------N-RIAPAYLFTGPRGTGKTSSARILAKSLNCLNSDKPTPEPCG 76 (620)
T ss_pred HhCCCcHhhccChHHHHHHHHHHHHc-----------C-CCCceEEEECCCCCChHHHHHHHHHHhcCCCcCCCCCCCCc
Confidence 34789999999999998887665532 1 12358999999999999999999999876
Q ss_pred --------------CeEEecccCcCChHHHHHHHHHhhhc--------------ccchhhHHHHHHHHhcCcccCCCCce
Q 035603 254 --------------DVYDLELTSVENNNELRSLLVDISSK--------------KKKSNVTLSGLLNCIGGLWSTCGGER 305 (431)
Q Consensus 254 --------------~i~~l~~~~~~~~~~l~~l~~~~~~~--------------~~~~~~~~s~lL~~ldg~~~~~~~~~ 305 (431)
+++.++.......+.+++++..+... +.-+....+.||..|+. +.+.+
T Consensus 77 ~C~~C~~i~~g~h~D~~ei~~~~~~~vd~IReii~~a~~~p~~~~~KViIIDEad~Lt~~a~naLLK~LEe----Pp~~t 152 (620)
T PRK14948 77 KCELCRAIAAGNALDVIEIDAASNTGVDNIRELIERAQFAPVQARWKVYVIDECHMLSTAAFNALLKTLEE----PPPRV 152 (620)
T ss_pred ccHHHHHHhcCCCccEEEEeccccCCHHHHHHHHHHHhhChhcCCceEEEEECccccCHHHHHHHHHHHhc----CCcCe
Confidence 33444443323446777777554322 23345577889999984 34458
Q ss_pred EEEEecCCCCCCChhhhccCceeEEEEcCCCCHHHHHHHHHHhh
Q 035603 306 IIVFTTNHVDKLDPALIRRGRMDKHIEMPYCCFEAFKVLAKNYL 349 (431)
Q Consensus 306 ivI~TTN~~~~Ld~AllRpGRfd~~I~~~~p~~~~r~~i~~~~l 349 (431)
++|++|++++.|.++|+. |. ..++|+.++.++....+....
T Consensus 153 vfIL~t~~~~~llpTIrS--Rc-~~~~f~~l~~~ei~~~L~~ia 193 (620)
T PRK14948 153 VFVLATTDPQRVLPTIIS--RC-QRFDFRRIPLEAMVQHLSEIA 193 (620)
T ss_pred EEEEEeCChhhhhHHHHh--he-eEEEecCCCHHHHHHHHHHHH
Confidence 888888999999999987 54 568888888777665555443
No 95
>PRK14971 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.35 E-value=2.7e-11 Score=130.22 Aligned_cols=146 Identities=17% Similarity=0.308 Sum_probs=107.9
Q ss_pred ccCCCCccccccChhhHHHHHHHHHHHHhCHHHHHHhCCCCCceeEEeCCCCCcHHHHHHHHHHHcCC------------
Q 035603 186 FEHPATFDTLAMASKKKEAIKKDLIKFTEGKEYYAKIGKAWKRGYLLFGPPGTGKSTMIAAMANCLNY------------ 253 (431)
Q Consensus 186 ~~~p~~f~~l~g~~~~k~~i~~~l~~~~~~~~~~~~~g~~~~rg~LL~GPPGtGKTsla~aiA~~l~~------------ 253 (431)
...|.+|++|+|.+.+++.|...+.. | ..+..||||||+|+|||++|+++|+.+.+
T Consensus 10 kyRP~~f~~viGq~~~~~~L~~~i~~-----------~-~l~hayLf~Gp~G~GKtt~A~~lAk~l~c~~~~~~~~~Cg~ 77 (614)
T PRK14971 10 KYRPSTFESVVGQEALTTTLKNAIAT-----------N-KLAHAYLFCGPRGVGKTTCARIFAKTINCQNLTADGEACNE 77 (614)
T ss_pred HHCCCCHHHhcCcHHHHHHHHHHHHc-----------C-CCCeeEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCCCc
Confidence 34789999999999999887765531 1 24568999999999999999999998753
Q ss_pred -------------CeEEecccCcCChHHHHHHHHHhhhc--------------ccchhhHHHHHHHHhcCcccCCCCceE
Q 035603 254 -------------DVYDLELTSVENNNELRSLLVDISSK--------------KKKSNVTLSGLLNCIGGLWSTCGGERI 306 (431)
Q Consensus 254 -------------~i~~l~~~~~~~~~~l~~l~~~~~~~--------------~~~~~~~~s~lL~~ldg~~~~~~~~~i 306 (431)
+++.++..+....+.++.++..+... +.-+....+.||..|+.. .+..+
T Consensus 78 C~sC~~~~~~~~~n~~~ld~~~~~~vd~Ir~li~~~~~~P~~~~~KVvIIdea~~Ls~~a~naLLK~LEep----p~~ti 153 (614)
T PRK14971 78 CESCVAFNEQRSYNIHELDAASNNSVDDIRNLIEQVRIPPQIGKYKIYIIDEVHMLSQAAFNAFLKTLEEP----PSYAI 153 (614)
T ss_pred chHHHHHhcCCCCceEEecccccCCHHHHHHHHHHHhhCcccCCcEEEEEECcccCCHHHHHHHHHHHhCC----CCCeE
Confidence 45556655434456677776544322 233455678899998854 34478
Q ss_pred EEEecCCCCCCChhhhccCceeEEEEcCCCCHHHHHHHHHHhhc
Q 035603 307 IVFTTNHVDKLDPALIRRGRMDKHIEMPYCCFEAFKVLAKNYLE 350 (431)
Q Consensus 307 vI~TTN~~~~Ld~AllRpGRfd~~I~~~~p~~~~r~~i~~~~l~ 350 (431)
+|++|+.+.+|-++|+. |. ..++|..++.++....++..+.
T Consensus 154 fIL~tt~~~kIl~tI~S--Rc-~iv~f~~ls~~ei~~~L~~ia~ 194 (614)
T PRK14971 154 FILATTEKHKILPTILS--RC-QIFDFNRIQVADIVNHLQYVAS 194 (614)
T ss_pred EEEEeCCchhchHHHHh--hh-heeecCCCCHHHHHHHHHHHHH
Confidence 88888888999999998 44 5699999998888777766544
No 96
>PRK12402 replication factor C small subunit 2; Reviewed
Probab=99.32 E-value=5e-11 Score=119.08 Aligned_cols=149 Identities=16% Similarity=0.214 Sum_probs=96.0
Q ss_pred cceeeeccCCCCccccccChhhHHHHHHHHHHHHhCHHHHHHhCCCCCceeEEeCCCCCcHHHHHHHHHHHcCC-----C
Q 035603 180 KWSHVYFEHPATFDTLAMASKKKEAIKKDLIKFTEGKEYYAKIGKAWKRGYLLFGPPGTGKSTMIAAMANCLNY-----D 254 (431)
Q Consensus 180 ~w~~~~~~~p~~f~~l~g~~~~k~~i~~~l~~~~~~~~~~~~~g~~~~rg~LL~GPPGtGKTsla~aiA~~l~~-----~ 254 (431)
.|. .--.|.+|++++|.+++++.+...+. . +. ..++|||||||||||++|+++|+++.. +
T Consensus 4 ~w~--~ky~P~~~~~~~g~~~~~~~L~~~~~----~-------~~--~~~lll~Gp~GtGKT~la~~~~~~l~~~~~~~~ 68 (337)
T PRK12402 4 LWT--EKYRPALLEDILGQDEVVERLSRAVD----S-------PN--LPHLLVQGPPGSGKTAAVRALARELYGDPWENN 68 (337)
T ss_pred chH--HhhCCCcHHHhcCCHHHHHHHHHHHh----C-------CC--CceEEEECCCCCCHHHHHHHHHHHhcCcccccc
Confidence 454 45579999999999998887765442 1 11 126999999999999999999998843 4
Q ss_pred eEEecccCcCC--------------------------hHHHHHHHHHhhh--------c-------ccchhhHHHHHHHH
Q 035603 255 VYDLELTSVEN--------------------------NNELRSLLVDISS--------K-------KKKSNVTLSGLLNC 293 (431)
Q Consensus 255 i~~l~~~~~~~--------------------------~~~l~~l~~~~~~--------~-------~~~~~~~~s~lL~~ 293 (431)
++.+++.++.. .+.++.+...... + +.-.......|+..
T Consensus 69 ~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlilDe~~~l~~~~~~~L~~~ 148 (337)
T PRK12402 69 FTEFNVADFFDQGKKYLVEDPRFAHFLGTDKRIRSSKIDNFKHVLKEYASYRPLSADYKTILLDNAEALREDAQQALRRI 148 (337)
T ss_pred eEEechhhhhhcchhhhhcCcchhhhhhhhhhhccchHHHHHHHHHHHHhcCCCCCCCcEEEEeCcccCCHHHHHHHHHH
Confidence 56666654310 1112222211111 0 11122334556666
Q ss_pred hcCcccCCCCceEEEEecCCCCCCChhhhccCceeEEEEcCCCCHHHHHHHHHHhhc
Q 035603 294 IGGLWSTCGGERIIVFTTNHVDKLDPALIRRGRMDKHIEMPYCCFEAFKVLAKNYLE 350 (431)
Q Consensus 294 ldg~~~~~~~~~ivI~TTN~~~~Ld~AllRpGRfd~~I~~~~p~~~~r~~i~~~~l~ 350 (431)
++... ....+|+||+.+..+.++|.+ |. ..+++++|+.++...+++....
T Consensus 149 le~~~----~~~~~Il~~~~~~~~~~~L~s--r~-~~v~~~~~~~~~~~~~l~~~~~ 198 (337)
T PRK12402 149 MEQYS----RTCRFIIATRQPSKLIPPIRS--RC-LPLFFRAPTDDELVDVLESIAE 198 (337)
T ss_pred HHhcc----CCCeEEEEeCChhhCchhhcC--Cc-eEEEecCCCHHHHHHHHHHHHH
Confidence 66432 224566677777788888887 54 5789999999988888887654
No 97
>PRK14950 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.31 E-value=5.7e-11 Score=127.57 Aligned_cols=145 Identities=17% Similarity=0.332 Sum_probs=101.4
Q ss_pred cCCCCccccccChhhHHHHHHHHHHHHhCHHHHHHhCCCCCceeEEeCCCCCcHHHHHHHHHHHcCC-------------
Q 035603 187 EHPATFDTLAMASKKKEAIKKDLIKFTEGKEYYAKIGKAWKRGYLLFGPPGTGKSTMIAAMANCLNY------------- 253 (431)
Q Consensus 187 ~~p~~f~~l~g~~~~k~~i~~~l~~~~~~~~~~~~~g~~~~rg~LL~GPPGtGKTsla~aiA~~l~~------------- 253 (431)
..|.+|++|+|++.+++.|...+.. | ..+..||||||||+|||++|+++|+.+++
T Consensus 10 yRP~~~~eiiGq~~~~~~L~~~i~~-----------~-~i~~a~Lf~Gp~G~GKTtlA~~lA~~l~c~~~~~~~~~c~~c 77 (585)
T PRK14950 10 WRSQTFAELVGQEHVVQTLRNAIAE-----------G-RVAHAYLFTGPRGVGKTSTARILAKAVNCTTNDPKGRPCGTC 77 (585)
T ss_pred hCCCCHHHhcCCHHHHHHHHHHHHh-----------C-CCceEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCccC
Confidence 4799999999999999887655431 1 13457999999999999999999998864
Q ss_pred ------------CeEEecccCcCChHHHHHHHHHhhhc--------------ccchhhHHHHHHHHhcCcccCCCCceEE
Q 035603 254 ------------DVYDLELTSVENNNELRSLLVDISSK--------------KKKSNVTLSGLLNCIGGLWSTCGGERII 307 (431)
Q Consensus 254 ------------~i~~l~~~~~~~~~~l~~l~~~~~~~--------------~~~~~~~~s~lL~~ldg~~~~~~~~~iv 307 (431)
+++.++.+.....+.++++....... +.-.....+.||..|+.. ....++
T Consensus 78 ~~c~~i~~~~~~d~~~i~~~~~~~vd~ir~ii~~~~~~p~~~~~kVvIIDEa~~L~~~a~naLLk~LEep----p~~tv~ 153 (585)
T PRK14950 78 EMCRAIAEGSAVDVIEMDAASHTSVDDAREIIERVQFRPALARYKVYIIDEVHMLSTAAFNALLKTLEEP----PPHAIF 153 (585)
T ss_pred HHHHHHhcCCCCeEEEEeccccCCHHHHHHHHHHHhhCcccCCeEEEEEeChHhCCHHHHHHHHHHHhcC----CCCeEE
Confidence 23334443333345566654332221 222345677888888854 344788
Q ss_pred EEecCCCCCCChhhhccCceeEEEEcCCCCHHHHHHHHHHhhc
Q 035603 308 VFTTNHVDKLDPALIRRGRMDKHIEMPYCCFEAFKVLAKNYLE 350 (431)
Q Consensus 308 I~TTN~~~~Ld~AllRpGRfd~~I~~~~p~~~~r~~i~~~~l~ 350 (431)
|++|+.++.+.+.+.+ |. ..++|..++..+...++.....
T Consensus 154 Il~t~~~~kll~tI~S--R~-~~i~f~~l~~~el~~~L~~~a~ 193 (585)
T PRK14950 154 ILATTEVHKVPATILS--RC-QRFDFHRHSVADMAAHLRKIAA 193 (585)
T ss_pred EEEeCChhhhhHHHHh--cc-ceeeCCCCCHHHHHHHHHHHHH
Confidence 8888888889999987 44 4688999988887777666543
No 98
>COG2812 DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair]
Probab=99.31 E-value=1.2e-11 Score=128.56 Aligned_cols=146 Identities=19% Similarity=0.327 Sum_probs=109.2
Q ss_pred CCCCccccccChhhHHHHHHHHHHHHhCHHHHHHhCCCCCceeEEeCCCCCcHHHHHHHHHHHcCCC-------------
Q 035603 188 HPATFDTLAMASKKKEAIKKDLIKFTEGKEYYAKIGKAWKRGYLLFGPPGTGKSTMIAAMANCLNYD------------- 254 (431)
Q Consensus 188 ~p~~f~~l~g~~~~k~~i~~~l~~~~~~~~~~~~~g~~~~rg~LL~GPPGtGKTsla~aiA~~l~~~------------- 254 (431)
+|.+|++|+|++.+.+.|.+.+..-. ...+|||.||.||||||+||.+|+.+++.
T Consensus 11 RP~~F~evvGQe~v~~~L~nal~~~r------------i~hAYlfsG~RGvGKTt~Ari~AkalNC~~~~~~ePC~~C~~ 78 (515)
T COG2812 11 RPKTFDDVVGQEHVVKTLSNALENGR------------IAHAYLFSGPRGVGKTTIARILAKALNCENGPTAEPCGKCIS 78 (515)
T ss_pred CcccHHHhcccHHHHHHHHHHHHhCc------------chhhhhhcCCCCcCchhHHHHHHHHhcCCCCCCCCcchhhhh
Confidence 58999999999999998877653211 23589999999999999999999998864
Q ss_pred -----------eEEecccCcCChHHHHHHHHHhhhc--------------ccchhhHHHHHHHHhcCcccCCCCceEEEE
Q 035603 255 -----------VYDLELTSVENNNELRSLLVDISSK--------------KKKSNVTLSGLLNCIGGLWSTCGGERIIVF 309 (431)
Q Consensus 255 -----------i~~l~~~~~~~~~~l~~l~~~~~~~--------------~~~~~~~~s~lL~~ldg~~~~~~~~~ivI~ 309 (431)
++.+|..+-.+-++++++.....-. +.-+...++.||..+.. +...+++|+
T Consensus 79 Ck~I~~g~~~DviEiDaASn~gVddiR~i~e~v~y~P~~~ryKVyiIDEvHMLS~~afNALLKTLEE----PP~hV~FIl 154 (515)
T COG2812 79 CKEINEGSLIDVIEIDAASNTGVDDIREIIEKVNYAPSEGRYKVYIIDEVHMLSKQAFNALLKTLEE----PPSHVKFIL 154 (515)
T ss_pred hHhhhcCCcccchhhhhhhccChHHHHHHHHHhccCCccccceEEEEecHHhhhHHHHHHHhccccc----CccCeEEEE
Confidence 2222332323446677776655433 45567888999999884 456699999
Q ss_pred ecCCCCCCChhhhccCceeEEEEcCCCCHHHHHHHHHHhhchh
Q 035603 310 TTNHVDKLDPALIRRGRMDKHIEMPYCCFEAFKVLAKNYLEIE 352 (431)
Q Consensus 310 TTN~~~~Ld~AllRpGRfd~~I~~~~p~~~~r~~i~~~~l~~~ 352 (431)
+|..++++++.++. |. .+..|..-+.+.....++..+..+
T Consensus 155 ATTe~~Kip~TIlS--Rc-q~f~fkri~~~~I~~~L~~i~~~E 194 (515)
T COG2812 155 ATTEPQKIPNTILS--RC-QRFDFKRLDLEEIAKHLAAILDKE 194 (515)
T ss_pred ecCCcCcCchhhhh--cc-ccccccCCCHHHHHHHHHHHHHhc
Confidence 99999999999997 33 456677888888877777777643
No 99
>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN. Members of this family are the GvpN protein associated with the production of gas vesicles produced in some prokaryotes to give cells buoyancy. This family belongs to a larger family of ATPases (pfam07728).
Probab=99.30 E-value=7.5e-11 Score=114.40 Aligned_cols=136 Identities=19% Similarity=0.213 Sum_probs=91.9
Q ss_pred hHHHHHHHHHHHHhCHHHHHHhCCCCCceeEEeCCCCCcHHHHHHHHHHHcCCCeEEecccCcCChHHHH----------
Q 035603 201 KKEAIKKDLIKFTEGKEYYAKIGKAWKRGYLLFGPPGTGKSTMIAAMANCLNYDVYDLELTSVENNNELR---------- 270 (431)
Q Consensus 201 ~k~~i~~~l~~~~~~~~~~~~~g~~~~rg~LL~GPPGtGKTsla~aiA~~l~~~i~~l~~~~~~~~~~l~---------- 270 (431)
..+.+.+.+..++.. .+.+||+||||||||++|+++|..+|.+++.+++..-.+..++-
T Consensus 6 ~~~~l~~~~l~~l~~-----------g~~vLL~G~~GtGKT~lA~~la~~lg~~~~~i~~~~~~~~~dllg~~~~~~~~~ 74 (262)
T TIGR02640 6 AVKRVTSRALRYLKS-----------GYPVHLRGPAGTGKTTLAMHVARKRDRPVMLINGDAELTTSDLVGSYAGYTRKK 74 (262)
T ss_pred HHHHHHHHHHHHHhc-----------CCeEEEEcCCCCCHHHHHHHHHHHhCCCEEEEeCCccCCHHHHhhhhcccchhh
Confidence 344455555555542 35799999999999999999999999999998776532222110
Q ss_pred ---HH-------------------HHHhhhc---------ccchhhHHHHHHHHhcCcc-cC-----------CCCceEE
Q 035603 271 ---SL-------------------LVDISSK---------KKKSNVTLSGLLNCIGGLW-ST-----------CGGERII 307 (431)
Q Consensus 271 ---~l-------------------~~~~~~~---------~~~~~~~~s~lL~~ldg~~-~~-----------~~~~~iv 307 (431)
.+ +..+... +.....+.+.|+..|+.-. .- ...+..|
T Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~g~l~~A~~~g~~lllDEi~r~~~~~q~~Ll~~Le~~~~~i~~~~~~~~~i~~~~~frv 154 (262)
T TIGR02640 75 VHDQFIHNVVKLEDIVRQNWVDNRLTLAVREGFTLVYDEFTRSKPETNNVLLSVFEEGVLELPGKRGTSRYVDVHPEFRV 154 (262)
T ss_pred HHHHHHHHhhhhhcccceeecCchHHHHHHcCCEEEEcchhhCCHHHHHHHHHHhcCCeEEccCCCCCCceEecCCCCEE
Confidence 00 0111111 2344567777888886421 00 1124568
Q ss_pred EEecCCCC-----CCChhhhccCceeEEEEcCCCCHHHHHHHHHHhhc
Q 035603 308 VFTTNHVD-----KLDPALIRRGRMDKHIEMPYCCFEAFKVLAKNYLE 350 (431)
Q Consensus 308 I~TTN~~~-----~Ld~AllRpGRfd~~I~~~~p~~~~r~~i~~~~l~ 350 (431)
|+|+|... .+++||++ || ..+.+++|+.+...+|++...+
T Consensus 155 IaTsN~~~~~g~~~l~~aL~~--R~-~~i~i~~P~~~~e~~Il~~~~~ 199 (262)
T TIGR02640 155 IFTSNPVEYAGVHETQDALLD--RL-ITIFMDYPDIDTETAILRAKTD 199 (262)
T ss_pred EEeeCCccccceecccHHHHh--hc-EEEECCCCCHHHHHHHHHHhhC
Confidence 99999763 67999999 88 7899999999998889888764
No 100
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=99.30 E-value=3.3e-11 Score=131.92 Aligned_cols=151 Identities=17% Similarity=0.270 Sum_probs=105.8
Q ss_pred ccccChhhHHHHHHHHHHHHhCHHHHHHhCCCCCceeEEeCCCCCcHHHHHHHHHHHcCCCeEEecccCcCChHHHHHHH
Q 035603 194 TLAMASKKKEAIKKDLIKFTEGKEYYAKIGKAWKRGYLLFGPPGTGKSTMIAAMANCLNYDVYDLELTSVENNNELRSLL 273 (431)
Q Consensus 194 ~l~g~~~~k~~i~~~l~~~~~~~~~~~~~g~~~~rg~LL~GPPGtGKTsla~aiA~~l~~~i~~l~~~~~~~~~~l~~l~ 273 (431)
.|+|+++.++.|.+.+.....+- ...+. +...+||+||||||||.+|+++|..++.+++.++++.......+.+++
T Consensus 459 ~ViGQ~~ai~~l~~~i~~~~~gl---~~~~k-p~~~~Lf~GP~GvGKT~lAk~LA~~l~~~~i~id~se~~~~~~~~~Li 534 (758)
T PRK11034 459 LVFGQDKAIEALTEAIKMSRAGL---GHEHK-PVGSFLFAGPTGVGKTEVTVQLSKALGIELLRFDMSEYMERHTVSRLI 534 (758)
T ss_pred eEeCcHHHHHHHHHHHHHHhccc---cCCCC-CcceEEEECCCCCCHHHHHHHHHHHhCCCcEEeechhhcccccHHHHc
Confidence 47899999998888776543210 00011 123689999999999999999999999999999988764433333333
Q ss_pred H---------------Hhhh----c-------ccchhhHHHHHHHHhcC-cccCC-C-----CceEEEEecCCC------
Q 035603 274 V---------------DISS----K-------KKKSNVTLSGLLNCIGG-LWSTC-G-----GERIIVFTTNHV------ 314 (431)
Q Consensus 274 ~---------------~~~~----~-------~~~~~~~~s~lL~~ldg-~~~~~-~-----~~~ivI~TTN~~------ 314 (431)
. +... . +..+....+.||+.||. .-... + .+.+||+|||.-
T Consensus 535 G~~~gyvg~~~~g~L~~~v~~~p~sVlllDEieka~~~v~~~LLq~ld~G~ltd~~g~~vd~rn~iiI~TsN~g~~~~~~ 614 (758)
T PRK11034 535 GAPPGYVGFDQGGLLTDAVIKHPHAVLLLDEIEKAHPDVFNLLLQVMDNGTLTDNNGRKADFRNVVLVMTTNAGVRETER 614 (758)
T ss_pred CCCCCcccccccchHHHHHHhCCCcEEEeccHhhhhHHHHHHHHHHHhcCeeecCCCceecCCCcEEEEeCCcCHHHHhh
Confidence 2 1111 1 33445677889999873 21111 1 357899999922
Q ss_pred -------------------CCCChhhhccCceeEEEEcCCCCHHHHHHHHHHhhc
Q 035603 315 -------------------DKLDPALIRRGRMDKHIEMPYCCFEAFKVLAKNYLE 350 (431)
Q Consensus 315 -------------------~~Ld~AllRpGRfd~~I~~~~p~~~~r~~i~~~~l~ 350 (431)
..+.|+|+. |+|..|.|++.+.+....|+..++.
T Consensus 615 ~~~g~~~~~~~~~~~~~~~~~f~pefl~--Rid~ii~f~~L~~~~l~~I~~~~l~ 667 (758)
T PRK11034 615 KSIGLIHQDNSTDAMEEIKKIFTPEFRN--RLDNIIWFDHLSTDVIHQVVDKFIV 667 (758)
T ss_pred cccCcccchhhHHHHHHHHHhcCHHHHc--cCCEEEEcCCCCHHHHHHHHHHHHH
Confidence 236688888 9999999999999999999988774
No 101
>TIGR02902 spore_lonB ATP-dependent protease LonB. Members of this protein are LonB, a paralog of the ATP-dependent protease La (LonA, TIGR00763). LonB proteins are found strictly, and almost universally, in endospore-forming bacteria. This protease was shown, in Bacillus subtilis, to be expressed specifically in the forespore, during sporulation, under control of sigma(F). The lonB gene, despite location immediately upstream of lonA, was shown to be monocistronic. LonB appears able to act on sigma(H) for post-translation control, but lonB mutation did not produce an obvious sporulation defect under the conditions tested. Note that additional paralogs of LonA and LonB occur in the Clostridium lineage and this model selects only one per species as the protein that corresponds to LonB in B. subtilis.
Probab=99.28 E-value=5e-11 Score=126.47 Aligned_cols=152 Identities=21% Similarity=0.251 Sum_probs=101.2
Q ss_pred eccCCCCccccccChhhHHHHHHHHHHHHhCHHHHHHhCCCCCceeEEeCCCCCcHHHHHHHHHHHc----------CCC
Q 035603 185 YFEHPATFDTLAMASKKKEAIKKDLIKFTEGKEYYAKIGKAWKRGYLLFGPPGTGKSTMIAAMANCL----------NYD 254 (431)
Q Consensus 185 ~~~~p~~f~~l~g~~~~k~~i~~~l~~~~~~~~~~~~~g~~~~rg~LL~GPPGtGKTsla~aiA~~l----------~~~ 254 (431)
..-+|.+|++++|.+...+.+...+ . .+.+..+||+||||||||++|+++.+++ +.+
T Consensus 57 ~~~rp~~f~~iiGqs~~i~~l~~al----~---------~~~~~~vLi~Ge~GtGKt~lAr~i~~~~~~~~~s~~~~~~~ 123 (531)
T TIGR02902 57 EKTRPKSFDEIIGQEEGIKALKAAL----C---------GPNPQHVIIYGPPGVGKTAAARLVLEEAKKNPASPFKEGAA 123 (531)
T ss_pred HhhCcCCHHHeeCcHHHHHHHHHHH----h---------CCCCceEEEECCCCCCHHHHHHHHHHHhhhccCCCcCCCCC
Confidence 4457899999999998887776432 1 1235689999999999999999998753 357
Q ss_pred eEEecccCcC-ChHHHH-HHH---------------------------HHhhhc-------ccchhhHHHHHHHHhcCcc
Q 035603 255 VYDLELTSVE-NNNELR-SLL---------------------------VDISSK-------KKKSNVTLSGLLNCIGGLW 298 (431)
Q Consensus 255 i~~l~~~~~~-~~~~l~-~l~---------------------------~~~~~~-------~~~~~~~~s~lL~~ldg~~ 298 (431)
++.++++... +...+. .++ ..+... +.-+....+.||..|+.-.
T Consensus 124 fi~id~~~~~~~~~~~~~~li~~~~~p~~~~~~~~g~~g~~~~~~G~l~~a~gG~L~IdEI~~L~~~~q~~LL~~Le~~~ 203 (531)
T TIGR02902 124 FVEIDATTARFDERGIADPLIGSVHDPIYQGAGPLGIAGIPQPKPGAVTRAHGGVLFIDEIGELHPVQMNKLLKVLEDRK 203 (531)
T ss_pred EEEEccccccCCccccchhhcCCcccchhccccccccCCcccccCchhhccCCcEEEEechhhCCHHHHHHHHHHHHhCe
Confidence 8888876421 111111 010 011111 2234456677777764210
Q ss_pred --------c-----------------CCCCceEEEEecCCCCCCChhhhccCceeEEEEcCCCCHHHHHHHHHHhhchh
Q 035603 299 --------S-----------------TCGGERIIVFTTNHVDKLDPALIRRGRMDKHIEMPYCCFEAFKVLAKNYLEIE 352 (431)
Q Consensus 299 --------~-----------------~~~~~~ivI~TTN~~~~Ld~AllRpGRfd~~I~~~~p~~~~r~~i~~~~l~~~ 352 (431)
+ .+.+-++|++|||.++.|+|++++ |+ ..|.|+.++.+++..++++.+...
T Consensus 204 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~rlI~ATt~~p~~L~paLrs--R~-~~I~f~pL~~eei~~Il~~~a~k~ 279 (531)
T TIGR02902 204 VFLDSAYYNSENPNIPSHIHDIFQNGLPADFRLIGATTRNPEEIPPALRS--RC-VEIFFRPLLDEEIKEIAKNAAEKI 279 (531)
T ss_pred eeeccccccccCcccccchhhhcccCcccceEEEEEecCCcccCChHHhh--hh-heeeCCCCCHHHHHHHHHHHHHHc
Confidence 0 011226777888999999999999 77 478899999999999999987643
No 102
>PRK10787 DNA-binding ATP-dependent protease La; Provisional
Probab=99.28 E-value=4e-11 Score=132.02 Aligned_cols=146 Identities=21% Similarity=0.216 Sum_probs=105.2
Q ss_pred ccccChhhHHHHHHHHHHHHhCHHHHHHhCCCCCceeEEeCCCCCcHHHHHHHHHHHcCCCeEEecccCcCChHHHH---
Q 035603 194 TLAMASKKKEAIKKDLIKFTEGKEYYAKIGKAWKRGYLLFGPPGTGKSTMIAAMANCLNYDVYDLELTSVENNNELR--- 270 (431)
Q Consensus 194 ~l~g~~~~k~~i~~~l~~~~~~~~~~~~~g~~~~rg~LL~GPPGtGKTsla~aiA~~l~~~i~~l~~~~~~~~~~l~--- 270 (431)
+..|.+++|+.|++.+...... +......++|+||||||||++++++|+.++.+++.++++.+.+...+.
T Consensus 323 ~~~g~~~vK~~i~~~l~~~~~~-------~~~~g~~i~l~GppG~GKTtl~~~ia~~l~~~~~~i~~~~~~d~~~i~g~~ 395 (784)
T PRK10787 323 DHYGLERVKDRILEYLAVQSRV-------NKIKGPILCLVGPPGVGKTSLGQSIAKATGRKYVRMALGGVRDEAEIRGHR 395 (784)
T ss_pred hccCHHHHHHHHHHHHHHHHhc-------ccCCCceEEEECCCCCCHHHHHHHHHHHhCCCEEEEEcCCCCCHHHhccch
Confidence 3799999999998877644332 122344689999999999999999999999999999888765444332
Q ss_pred ------------HHHHHhhhc-------------ccchhhHHHHHHHHhcCcc-----------cCCCCceEEEEecCCC
Q 035603 271 ------------SLLVDISSK-------------KKKSNVTLSGLLNCIGGLW-----------STCGGERIIVFTTNHV 314 (431)
Q Consensus 271 ------------~l~~~~~~~-------------~~~~~~~~s~lL~~ldg~~-----------~~~~~~~ivI~TTN~~ 314 (431)
+.+..+... ........+.||..+|.-. ...-+++++|+|||..
T Consensus 396 ~~~~g~~~G~~~~~l~~~~~~~~villDEidk~~~~~~g~~~~aLlevld~~~~~~~~d~~~~~~~dls~v~~i~TaN~~ 475 (784)
T PRK10787 396 RTYIGSMPGKLIQKMAKVGVKNPLFLLDEIDKMSSDMRGDPASALLEVLDPEQNVAFSDHYLEVDYDLSDVMFVATSNSM 475 (784)
T ss_pred hccCCCCCcHHHHHHHhcCCCCCEEEEEChhhcccccCCCHHHHHHHHhccccEEEEecccccccccCCceEEEEcCCCC
Confidence 222222111 1111224678888887410 0112468999999987
Q ss_pred CCCChhhhccCceeEEEEcCCCCHHHHHHHHHHhhc
Q 035603 315 DKLDPALIRRGRMDKHIEMPYCCFEAFKVLAKNYLE 350 (431)
Q Consensus 315 ~~Ld~AllRpGRfd~~I~~~~p~~~~r~~i~~~~l~ 350 (431)
.|+|||+. ||+ .|.++.++.++..+|++.|+.
T Consensus 476 -~i~~aLl~--R~~-ii~~~~~t~eek~~Ia~~~L~ 507 (784)
T PRK10787 476 -NIPAPLLD--RME-VIRLSGYTEDEKLNIAKRHLL 507 (784)
T ss_pred -CCCHHHhc--cee-eeecCCCCHHHHHHHHHHhhh
Confidence 59999999 996 688999999999999999984
No 103
>COG2607 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=99.26 E-value=1.8e-10 Score=107.48 Aligned_cols=162 Identities=19% Similarity=0.264 Sum_probs=129.1
Q ss_pred ceeeeccCCCCccccccChhhHHHHHHHHHHHHhCHHHHHHhCCCCCceeEEeCCCCCcHHHHHHHHHHHc---CCCeEE
Q 035603 181 WSHVYFEHPATFDTLAMASKKKEAIKKDLIKFTEGKEYYAKIGKAWKRGYLLFGPPGTGKSTMIAAMANCL---NYDVYD 257 (431)
Q Consensus 181 w~~~~~~~p~~f~~l~g~~~~k~~i~~~l~~~~~~~~~~~~~g~~~~rg~LL~GPPGtGKTsla~aiA~~l---~~~i~~ 257 (431)
...++-.+|..+.+|+|-+.+|+.|.+....|... . +...+||+|..|||||||++|+-+++ +..++.
T Consensus 48 L~pv~~~~~i~L~~l~Gvd~qk~~L~~NT~~F~~G--------~-pANnVLLwGaRGtGKSSLVKA~~~e~~~~glrLVE 118 (287)
T COG2607 48 LEPVPDPDPIDLADLVGVDRQKEALVRNTEQFAEG--------L-PANNVLLWGARGTGKSSLVKALLNEYADEGLRLVE 118 (287)
T ss_pred ccCCCCCCCcCHHHHhCchHHHHHHHHHHHHHHcC--------C-cccceEEecCCCCChHHHHHHHHHHHHhcCCeEEE
Confidence 44556667789999999999999999999999874 2 24689999999999999999998876 567888
Q ss_pred ecccCcCChHHHHHHHHHhhhc---------ccchhhHHHHHHHHhcCcccCCCCceEEEEecCCCCCCChhhh-c----
Q 035603 258 LELTSVENNNELRSLLVDISSK---------KKKSNVTLSGLLNCIGGLWSTCGGERIIVFTTNHVDKLDPALI-R---- 323 (431)
Q Consensus 258 l~~~~~~~~~~l~~l~~~~~~~---------~~~~~~~~s~lL~~ldg~~~~~~~~~ivI~TTN~~~~Ld~All-R---- 323 (431)
++-.++.+-..|.+.+.....+ ..........|-..|||-......+|+|.+|+|+-..|+.-+. +
T Consensus 119 V~k~dl~~Lp~l~~~Lr~~~~kFIlFcDDLSFe~gd~~yK~LKs~LeG~ve~rP~NVl~YATSNRRHLl~e~~~dn~~~~ 198 (287)
T COG2607 119 VDKEDLATLPDLVELLRARPEKFILFCDDLSFEEGDDAYKALKSALEGGVEGRPANVLFYATSNRRHLLPEDMKDNEGST 198 (287)
T ss_pred EcHHHHhhHHHHHHHHhcCCceEEEEecCCCCCCCchHHHHHHHHhcCCcccCCCeEEEEEecCCcccccHhhhhCCCcc
Confidence 8888776666666666665555 3445667778888999988888889999999998877664322 1
Q ss_pred ---------------cCceeEEEEcCCCCHHHHHHHHHHhhch
Q 035603 324 ---------------RGRMDKHIEMPYCCFEAFKVLAKNYLEI 351 (431)
Q Consensus 324 ---------------pGRfd~~I~~~~p~~~~r~~i~~~~l~~ 351 (431)
.-||...+-|..|+.+....|+.+|...
T Consensus 199 ~eih~~eaveEKlSlSDRFGLwL~F~~~~Q~~YL~~V~~~a~~ 241 (287)
T COG2607 199 GEIHPSEAVEEKLSLSDRFGLWLSFYPCDQDEYLKIVDHYAKH 241 (287)
T ss_pred cccChhHHHHHhhchhhhcceeecccCCCHHHHHHHHHHHHHH
Confidence 1289999999999999999999888753
No 104
>PRK00440 rfc replication factor C small subunit; Reviewed
Probab=99.26 E-value=2.9e-10 Score=112.67 Aligned_cols=150 Identities=19% Similarity=0.196 Sum_probs=99.8
Q ss_pred cceeeeccCCCCccccccChhhHHHHHHHHHHHHhCHHHHHHhCCCCCceeEEeCCCCCcHHHHHHHHHHHcC-----CC
Q 035603 180 KWSHVYFEHPATFDTLAMASKKKEAIKKDLIKFTEGKEYYAKIGKAWKRGYLLFGPPGTGKSTMIAAMANCLN-----YD 254 (431)
Q Consensus 180 ~w~~~~~~~p~~f~~l~g~~~~k~~i~~~l~~~~~~~~~~~~~g~~~~rg~LL~GPPGtGKTsla~aiA~~l~-----~~ 254 (431)
.|. +...|.+|++++|.+++++.+...+. . +. ...+|||||||||||++++++++++. ..
T Consensus 6 ~w~--~kyrP~~~~~~~g~~~~~~~l~~~i~----~-------~~--~~~~ll~G~~G~GKt~~~~~l~~~l~~~~~~~~ 70 (319)
T PRK00440 6 IWV--EKYRPRTLDEIVGQEEIVERLKSYVK----E-------KN--MPHLLFAGPPGTGKTTAALALARELYGEDWREN 70 (319)
T ss_pred ccc--hhhCCCcHHHhcCcHHHHHHHHHHHh----C-------CC--CCeEEEECCCCCCHHHHHHHHHHHHcCCccccc
Confidence 465 66789999999999988887766542 1 11 12589999999999999999999873 23
Q ss_pred eEEecccCcCChHHHHHHHHHhhh---------c-------ccchhhHHHHHHHHhcCcccCCCCceEEEEecCCCCCCC
Q 035603 255 VYDLELTSVENNNELRSLLVDISS---------K-------KKKSNVTLSGLLNCIGGLWSTCGGERIIVFTTNHVDKLD 318 (431)
Q Consensus 255 i~~l~~~~~~~~~~l~~l~~~~~~---------~-------~~~~~~~~s~lL~~ldg~~~~~~~~~ivI~TTN~~~~Ld 318 (431)
++.++.++......+...+..... + +.-.......|+..++... ....+|+++|.+..+.
T Consensus 71 ~i~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~vviiDe~~~l~~~~~~~L~~~le~~~----~~~~lIl~~~~~~~l~ 146 (319)
T PRK00440 71 FLELNASDERGIDVIRNKIKEFARTAPVGGAPFKIIFLDEADNLTSDAQQALRRTMEMYS----QNTRFILSCNYSSKII 146 (319)
T ss_pred eEEeccccccchHHHHHHHHHHHhcCCCCCCCceEEEEeCcccCCHHHHHHHHHHHhcCC----CCCeEEEEeCCccccc
Confidence 455554443322223222221111 1 1112334556777776542 2356777888888888
Q ss_pred hhhhccCceeEEEEcCCCCHHHHHHHHHHhhch
Q 035603 319 PALIRRGRMDKHIEMPYCCFEAFKVLAKNYLEI 351 (431)
Q Consensus 319 ~AllRpGRfd~~I~~~~p~~~~r~~i~~~~l~~ 351 (431)
+++.+ |+. .++++.++.++...++..++..
T Consensus 147 ~~l~s--r~~-~~~~~~l~~~ei~~~l~~~~~~ 176 (319)
T PRK00440 147 DPIQS--RCA-VFRFSPLKKEAVAERLRYIAEN 176 (319)
T ss_pred hhHHH--Hhh-eeeeCCCCHHHHHHHHHHHHHH
Confidence 88888 554 5899999999888888877654
No 105
>PRK05564 DNA polymerase III subunit delta'; Validated
Probab=99.25 E-value=5.1e-10 Score=111.34 Aligned_cols=140 Identities=15% Similarity=0.252 Sum_probs=99.9
Q ss_pred CccccccChhhHHHHHHHHHHHHhCHHHHHHhCCCCCceeEEeCCCCCcHHHHHHHHHHHcCC--------CeEEecccC
Q 035603 191 TFDTLAMASKKKEAIKKDLIKFTEGKEYYAKIGKAWKRGYLLFGPPGTGKSTMIAAMANCLNY--------DVYDLELTS 262 (431)
Q Consensus 191 ~f~~l~g~~~~k~~i~~~l~~~~~~~~~~~~~g~~~~rg~LL~GPPGtGKTsla~aiA~~l~~--------~i~~l~~~~ 262 (431)
+|++|+|.+.+++.|.+.+. ....+..|||+||+|+|||++|+++|..+.+ +++.+...+
T Consensus 2 ~~~~i~g~~~~~~~l~~~~~------------~~~~~ha~Lf~G~~G~Gk~~la~~~a~~l~c~~~~~~h~D~~~~~~~~ 69 (313)
T PRK05564 2 SFHTIIGHENIKNRIKNSII------------KNRFSHAHIIVGEDGIGKSLLAKEIALKILGKSQQREYVDIIEFKPIN 69 (313)
T ss_pred ChhhccCcHHHHHHHHHHHH------------cCCCCceEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCeEEecccc
Confidence 58999999999888876542 1234568999999999999999999998743 344443311
Q ss_pred --cCChHHHHHHHHHhhhc--------------ccchhhHHHHHHHHhcCcccCCCCceEEEEecCCCCCCChhhhccCc
Q 035603 263 --VENNNELRSLLVDISSK--------------KKKSNVTLSGLLNCIGGLWSTCGGERIIVFTTNHVDKLDPALIRRGR 326 (431)
Q Consensus 263 --~~~~~~l~~l~~~~~~~--------------~~~~~~~~s~lL~~ldg~~~~~~~~~ivI~TTN~~~~Ld~AllRpGR 326 (431)
.-..+.++++....... +..+....+.||..|+. +++..++|++|++++.|.|++..++
T Consensus 70 ~~~i~v~~ir~~~~~~~~~p~~~~~kv~iI~~ad~m~~~a~naLLK~LEe----pp~~t~~il~~~~~~~ll~TI~SRc- 144 (313)
T PRK05564 70 KKSIGVDDIRNIIEEVNKKPYEGDKKVIIIYNSEKMTEQAQNAFLKTIEE----PPKGVFIILLCENLEQILDTIKSRC- 144 (313)
T ss_pred CCCCCHHHHHHHHHHHhcCcccCCceEEEEechhhcCHHHHHHHHHHhcC----CCCCeEEEEEeCChHhCcHHHHhhc-
Confidence 11335677766533322 22344567889999884 3455888888899999999999844
Q ss_pred eeEEEEcCCCCHHHHHHHHHHhh
Q 035603 327 MDKHIEMPYCCFEAFKVLAKNYL 349 (431)
Q Consensus 327 fd~~I~~~~p~~~~r~~i~~~~l 349 (431)
..++|+.|+.++....+...+
T Consensus 145 --~~~~~~~~~~~~~~~~l~~~~ 165 (313)
T PRK05564 145 --QIYKLNRLSKEEIEKFISYKY 165 (313)
T ss_pred --eeeeCCCcCHHHHHHHHHHHh
Confidence 589999999888777666543
No 106
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=99.24 E-value=4e-11 Score=131.97 Aligned_cols=141 Identities=22% Similarity=0.271 Sum_probs=100.4
Q ss_pred CCCCccccccChhhHHHHHHHHHHHHhCHHHHHHhCCCCCceeEEeCCCCCcHHHHHHHHHHHc----------CCCeEE
Q 035603 188 HPATFDTLAMASKKKEAIKKDLIKFTEGKEYYAKIGKAWKRGYLLFGPPGTGKSTMIAAMANCL----------NYDVYD 257 (431)
Q Consensus 188 ~p~~f~~l~g~~~~k~~i~~~l~~~~~~~~~~~~~g~~~~rg~LL~GPPGtGKTsla~aiA~~l----------~~~i~~ 257 (431)
.|..++.++|.++..+.+.+.+ .. ..+.++||+||||||||++++++|..+ +..++.
T Consensus 177 r~~~l~~~igr~~ei~~~~~~L----~~---------~~~~n~lL~G~pG~GKT~l~~~la~~~~~~~~p~~l~~~~~~~ 243 (731)
T TIGR02639 177 KNGKIDPLIGREDELERTIQVL----CR---------RKKNNPLLVGEPGVGKTAIAEGLALRIAEGKVPENLKNAKIYS 243 (731)
T ss_pred hcCCCCcccCcHHHHHHHHHHH----hc---------CCCCceEEECCCCCCHHHHHHHHHHHHHhCCCchhhcCCeEEE
Confidence 4667899999887777655433 21 235689999999999999999999987 788999
Q ss_pred ecccCcCC--------hHHHHHHHHHhhhc-------c-----------cchhhH-HHHHHHHhcCcccCCCCceEEEEe
Q 035603 258 LELTSVEN--------NNELRSLLVDISSK-------K-----------KKSNVT-LSGLLNCIGGLWSTCGGERIIVFT 310 (431)
Q Consensus 258 l~~~~~~~--------~~~l~~l~~~~~~~-------~-----------~~~~~~-~s~lL~~ldg~~~~~~~~~ivI~T 310 (431)
++++.+.. ...+++++.++... + ...... .+-|+..+. .+++.+|++
T Consensus 244 ~~~~~l~a~~~~~g~~e~~l~~i~~~~~~~~~~ILfiDEih~l~~~g~~~~~~~~~~~~L~~~l~------~g~i~~Iga 317 (731)
T TIGR02639 244 LDMGSLLAGTKYRGDFEERLKAVVSEIEKEPNAILFIDEIHTIVGAGATSGGSMDASNLLKPALS------SGKLRCIGS 317 (731)
T ss_pred ecHHHHhhhccccchHHHHHHHHHHHHhccCCeEEEEecHHHHhccCCCCCccHHHHHHHHHHHh------CCCeEEEEe
Confidence 88766531 25678888765432 0 011111 223333332 245889999
Q ss_pred cCCC-----CCCChhhhccCceeEEEEcCCCCHHHHHHHHHHhhc
Q 035603 311 TNHV-----DKLDPALIRRGRMDKHIEMPYCCFEAFKVLAKNYLE 350 (431)
Q Consensus 311 TN~~-----~~Ld~AllRpGRfd~~I~~~~p~~~~r~~i~~~~l~ 350 (431)
||.. ..+|+||.| ||. .|+++.|+.+++..|++....
T Consensus 318 Tt~~e~~~~~~~d~al~r--Rf~-~i~v~~p~~~~~~~il~~~~~ 359 (731)
T TIGR02639 318 TTYEEYKNHFEKDRALSR--RFQ-KIDVGEPSIEETVKILKGLKE 359 (731)
T ss_pred cCHHHHHHHhhhhHHHHH--hCc-eEEeCCCCHHHHHHHHHHHHH
Confidence 8864 358999999 997 799999999999999986543
No 107
>KOG0735 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.23 E-value=1.5e-10 Score=121.39 Aligned_cols=175 Identities=13% Similarity=0.153 Sum_probs=120.2
Q ss_pred cccccChhhHHHHHHHHHHHHhCHHHHHHhCCCCCceeEEeCCCCCcHHHHHHHHHHHcCC----CeEEecccCcCCh--
Q 035603 193 DTLAMASKKKEAIKKDLIKFTEGKEYYAKIGKAWKRGYLLFGPPGTGKSTMIAAMANCLNY----DVYDLELTSVENN-- 266 (431)
Q Consensus 193 ~~l~g~~~~k~~i~~~l~~~~~~~~~~~~~g~~~~rg~LL~GPPGtGKTsla~aiA~~l~~----~i~~l~~~~~~~~-- 266 (431)
.+++..+..|++.-++...+ +..+..+||+||+|||||.|++++++++.. .+..++++.+...
T Consensus 408 ~d~i~~~s~kke~~n~~~sp-----------v~~~~~Ill~G~~GsGKT~L~kal~~~~~k~~~~hv~~v~Cs~l~~~~~ 476 (952)
T KOG0735|consen 408 HDFIQVPSYKKENANQELSP-----------VFRHGNILLNGPKGSGKTNLVKALFDYYSKDLIAHVEIVSCSTLDGSSL 476 (952)
T ss_pred Cceeecchhhhhhhhhhccc-----------ccccccEEEeCCCCCCHhHHHHHHHHHhccccceEEEEEechhccchhH
Confidence 56666777777654432222 344568999999999999999999998764 3455677776432
Q ss_pred H----HHHHHHHHhhhc-----------------------ccchhhHHHHHHHHhcCcccCCCCceEEEEecCCCCCCCh
Q 035603 267 N----ELRSLLVDISSK-----------------------KKKSNVTLSGLLNCIGGLWSTCGGERIIVFTTNHVDKLDP 319 (431)
Q Consensus 267 ~----~l~~l~~~~~~~-----------------------~~~~~~~~s~lL~~ldg~~~~~~~~~ivI~TTN~~~~Ld~ 319 (431)
+ .++.+|.++... .......+..+|+.+-......+..+.+|+|.+....|+|
T Consensus 477 e~iQk~l~~vfse~~~~~PSiIvLDdld~l~~~s~~e~~q~~~~~~rla~flnqvi~~y~~~~~~ia~Iat~qe~qtl~~ 556 (952)
T KOG0735|consen 477 EKIQKFLNNVFSEALWYAPSIIVLDDLDCLASASSNENGQDGVVSERLAAFLNQVIKIYLKRNRKIAVIATGQELQTLNP 556 (952)
T ss_pred HHHHHHHHHHHHHHHhhCCcEEEEcchhhhhccCcccCCcchHHHHHHHHHHHHHHHHHHccCcEEEEEEechhhhhcCh
Confidence 2 244455444332 1112334555664443333334445789999999999999
Q ss_pred hhhccCceeEEEEcCCCCHHHHHHHHHHhhchhcc-hhHHHHHhHhc-cCCCCHHHHHHHh
Q 035603 320 ALIRRGRMDKHIEMPYCCFEAFKVLAKNYLEIESH-ELFHEIGSLLG-ETDITPADVAENL 378 (431)
Q Consensus 320 AllRpGRfd~~I~~~~p~~~~r~~i~~~~l~~~~~-~~~~~i~~l~~-~~~~s~adI~~~l 378 (431)
-|..|++|+.++.+|.|+..+|.+|+++.+..... ...++++-++. +.||.+-|+.-++
T Consensus 557 ~L~s~~~Fq~~~~L~ap~~~~R~~IL~~~~s~~~~~~~~~dLd~ls~~TEGy~~~DL~ifV 617 (952)
T KOG0735|consen 557 LLVSPLLFQIVIALPAPAVTRRKEILTTIFSKNLSDITMDDLDFLSVKTEGYLATDLVIFV 617 (952)
T ss_pred hhcCccceEEEEecCCcchhHHHHHHHHHHHhhhhhhhhHHHHHHHHhcCCccchhHHHHH
Confidence 99999999999999999999999999998864432 23445555555 4499999986443
No 108
>COG0464 SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones]
Probab=99.21 E-value=1.4e-10 Score=122.34 Aligned_cols=163 Identities=26% Similarity=0.298 Sum_probs=122.4
Q ss_pred HhCHHHHHHhCCCCCceeEEeCCCCCcHHHHHHHHHHHcCCCeEEecccCc------CChHHHHHHHHHhhhc-------
Q 035603 213 TEGKEYYAKIGKAWKRGYLLFGPPGTGKSTMIAAMANCLNYDVYDLELTSV------ENNNELRSLLVDISSK------- 279 (431)
Q Consensus 213 ~~~~~~~~~~g~~~~rg~LL~GPPGtGKTsla~aiA~~l~~~i~~l~~~~~------~~~~~l~~l~~~~~~~------- 279 (431)
+..+..+...+..+++|++++||||||||++++++|++ +.....++...+ .....++.+|..+...
T Consensus 4 ~~~~~~~~~~~~~~~~~v~~~g~~~~~~t~~~~~~a~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~ii~~ 82 (494)
T COG0464 4 LKEPELFKKLGIEPPKGVLLHGPPGTGKTLLARALANE-GAEFLSINGPEILSKYVGESELRLRELFEEAEKLAPSIIFI 82 (494)
T ss_pred ccCHHHHHHhCCCCCCCceeeCCCCCchhHHHHHHHhc-cCcccccCcchhhhhhhhHHHHHHHHHHHHHHHhCCCeEee
Confidence 34577888999999999999999999999999999999 554444444433 1234455666554433
Q ss_pred --------------ccchhhHHHHHHHHhcCcccCCCCceEEEEecCCCCCCChhhhccCceeEEEEcCCCCHHHHHHHH
Q 035603 280 --------------KKKSNVTLSGLLNCIGGLWSTCGGERIIVFTTNHVDKLDPALIRRGRMDKHIEMPYCCFEAFKVLA 345 (431)
Q Consensus 280 --------------~~~~~~~~s~lL~~ldg~~~~~~~~~ivI~TTN~~~~Ld~AllRpGRfd~~I~~~~p~~~~r~~i~ 345 (431)
........++++..+|++. .+. +++++.||.+..+|+++.|||||+..+.++.|+...+..+.
T Consensus 83 d~~~~~~~~~~~~~~~~~~~v~~~l~~~~d~~~--~~~-v~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ei~ 159 (494)
T COG0464 83 DEIDALAPKRSSDQGEVERRVVAQLLALMDGLK--RGQ-VIVIGATNRPDGLDPAKRRPGRFDREIEVNLPDEAGRLEIL 159 (494)
T ss_pred chhhhcccCccccccchhhHHHHHHHHhccccc--CCc-eEEEeecCCccccChhHhCccccceeeecCCCCHHHHHHHH
Confidence 1233567899999999997 455 88889999999999999999999999999999999998887
Q ss_pred HHhhchhcchhHHHHHhHhc-cCCCCHHHHHHHhc
Q 035603 346 KNYLEIESHELFHEIGSLLG-ETDITPADVAENLM 379 (431)
Q Consensus 346 ~~~l~~~~~~~~~~i~~l~~-~~~~s~adI~~~l~ 379 (431)
..............+..++. ..|++++++..++.
T Consensus 160 ~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~l~~ 194 (494)
T COG0464 160 QIHTRLMFLGPPGTGKTLAARTVGKSGADLGALAK 194 (494)
T ss_pred HHHHhcCCCcccccHHHHHHhcCCccHHHHHHHHH
Confidence 76654332222233445555 44899999987663
No 109
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=99.20 E-value=2.3e-10 Score=126.04 Aligned_cols=148 Identities=15% Similarity=0.238 Sum_probs=103.3
Q ss_pred cccccChhhHHHHHHHHHHHHhCHHHHHHhCCC---CCc-eeEEeCCCCCcHHHHHHHHHHHcCCCeEEecccCcCChHH
Q 035603 193 DTLAMASKKKEAIKKDLIKFTEGKEYYAKIGKA---WKR-GYLLFGPPGTGKSTMIAAMANCLNYDVYDLELTSVENNNE 268 (431)
Q Consensus 193 ~~l~g~~~~k~~i~~~l~~~~~~~~~~~~~g~~---~~r-g~LL~GPPGtGKTsla~aiA~~l~~~i~~l~~~~~~~~~~ 268 (431)
+.|+|+++.++.|.+.+... +.|.. .|. .+||+||||||||++|+++|..++.+++.++++.......
T Consensus 454 ~~v~GQ~~ai~~l~~~i~~~--------~~g~~~~~~p~~~~lf~Gp~GvGKT~lA~~la~~l~~~~~~~d~se~~~~~~ 525 (731)
T TIGR02639 454 AKIFGQDEAIDSLVSSIKRS--------RAGLGNPNKPVGSFLFTGPTGVGKTELAKQLAEALGVHLERFDMSEYMEKHT 525 (731)
T ss_pred cceeCcHHHHHHHHHHHHHH--------hcCCCCCCCCceeEEEECCCCccHHHHHHHHHHHhcCCeEEEeCchhhhccc
Confidence 34678888877776655432 22332 133 4899999999999999999999999999999887543222
Q ss_pred HHHHHH---------------Hh----hhc-------ccchhhHHHHHHHHhcCcccCC-------CCceEEEEecCCCC
Q 035603 269 LRSLLV---------------DI----SSK-------KKKSNVTLSGLLNCIGGLWSTC-------GGERIIVFTTNHVD 315 (431)
Q Consensus 269 l~~l~~---------------~~----~~~-------~~~~~~~~s~lL~~ldg~~~~~-------~~~~ivI~TTN~~~ 315 (431)
+..++. +. ... +..+....+.||+.+|.-.-.. -.+.+||+|||...
T Consensus 526 ~~~lig~~~gyvg~~~~~~l~~~~~~~p~~VvllDEieka~~~~~~~Ll~~ld~g~~~d~~g~~vd~~~~iii~Tsn~g~ 605 (731)
T TIGR02639 526 VSRLIGAPPGYVGFEQGGLLTEAVRKHPHCVLLLDEIEKAHPDIYNILLQVMDYATLTDNNGRKADFRNVILIMTSNAGA 605 (731)
T ss_pred HHHHhcCCCCCcccchhhHHHHHHHhCCCeEEEEechhhcCHHHHHHHHHhhccCeeecCCCcccCCCCCEEEECCCcch
Confidence 222221 11 111 3445667888999887532111 12478999998631
Q ss_pred -------------------------CCChhhhccCceeEEEEcCCCCHHHHHHHHHHhhc
Q 035603 316 -------------------------KLDPALIRRGRMDKHIEMPYCCFEAFKVLAKNYLE 350 (431)
Q Consensus 316 -------------------------~Ld~AllRpGRfd~~I~~~~p~~~~r~~i~~~~l~ 350 (431)
.+.|+|+. |||..|.|.+.+.++...|++..+.
T Consensus 606 ~~~~~~~~~f~~~~~~~~~~~~~~~~f~pef~~--Rid~Vi~F~pLs~e~l~~Iv~~~L~ 663 (731)
T TIGR02639 606 SEMSKPPIGFGSENVESKSDKAIKKLFSPEFRN--RLDAIIHFNPLSEEVLEKIVQKFVD 663 (731)
T ss_pred hhhhhccCCcchhhhHHHHHHHHHhhcChHHHh--cCCeEEEcCCCCHHHHHHHHHHHHH
Confidence 25778876 9999999999999999999998875
No 110
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed
Probab=99.20 E-value=1.1e-10 Score=127.29 Aligned_cols=144 Identities=20% Similarity=0.265 Sum_probs=95.5
Q ss_pred cCCCCccccccChhhHHHHHHHHHHHHhCHHHHHHhCCCCCceeEEeCCCCCcHHHHHHHHHHHcCCCeEEecccCcCCh
Q 035603 187 EHPATFDTLAMASKKKEAIKKDLIKFTEGKEYYAKIGKAWKRGYLLFGPPGTGKSTMIAAMANCLNYDVYDLELTSVENN 266 (431)
Q Consensus 187 ~~p~~f~~l~g~~~~k~~i~~~l~~~~~~~~~~~~~g~~~~rg~LL~GPPGtGKTsla~aiA~~l~~~i~~l~~~~~~~~ 266 (431)
-.|.+|++++|.+.+.... ..+...+.. + ....+|||||||||||++|+++|+.++.+++.++.... ..
T Consensus 22 ~RP~tldd~vGQe~ii~~~-~~L~~~i~~-------~--~~~slLL~GPpGtGKTTLA~aIA~~~~~~f~~lna~~~-~i 90 (725)
T PRK13341 22 LRPRTLEEFVGQDHILGEG-RLLRRAIKA-------D--RVGSLILYGPPGVGKTTLARIIANHTRAHFSSLNAVLA-GV 90 (725)
T ss_pred cCCCcHHHhcCcHHHhhhh-HHHHHHHhc-------C--CCceEEEECCCCCCHHHHHHHHHHHhcCcceeehhhhh-hh
Confidence 3599999999998876531 122222221 1 12378999999999999999999999999988887643 22
Q ss_pred HHHHHHHHHhhh------c---------ccchhhHHHHHHHHhcCcccCCCCceEEEEec--CCCCCCChhhhccCceeE
Q 035603 267 NELRSLLVDISS------K---------KKKSNVTLSGLLNCIGGLWSTCGGERIIVFTT--NHVDKLDPALIRRGRMDK 329 (431)
Q Consensus 267 ~~l~~l~~~~~~------~---------~~~~~~~~s~lL~~ldg~~~~~~~~~ivI~TT--N~~~~Ld~AllRpGRfd~ 329 (431)
.+++..+..... . +.........|+..++. +.+++|++| |....+++++++++ .
T Consensus 91 ~dir~~i~~a~~~l~~~~~~~IL~IDEIh~Ln~~qQdaLL~~lE~------g~IiLI~aTTenp~~~l~~aL~SR~---~ 161 (725)
T PRK13341 91 KDLRAEVDRAKERLERHGKRTILFIDEVHRFNKAQQDALLPWVEN------GTITLIGATTENPYFEVNKALVSRS---R 161 (725)
T ss_pred HHHHHHHHHHHHHhhhcCCceEEEEeChhhCCHHHHHHHHHHhcC------ceEEEEEecCCChHhhhhhHhhccc---c
Confidence 334444433211 1 11223334556665542 236666654 34467999999843 4
Q ss_pred EEEcCCCCHHHHHHHHHHhhc
Q 035603 330 HIEMPYCCFEAFKVLAKNYLE 350 (431)
Q Consensus 330 ~I~~~~p~~~~r~~i~~~~l~ 350 (431)
.+.++.++.+++..+++.++.
T Consensus 162 v~~l~pLs~edi~~IL~~~l~ 182 (725)
T PRK13341 162 LFRLKSLSDEDLHQLLKRALQ 182 (725)
T ss_pred ceecCCCCHHHHHHHHHHHHH
Confidence 689999999999999988775
No 111
>PRK06893 DNA replication initiation factor; Validated
Probab=99.19 E-value=3.8e-10 Score=107.26 Aligned_cols=151 Identities=12% Similarity=0.138 Sum_probs=86.2
Q ss_pred eccCCCCccccccChhhHHHHHHHHHHHHhCHHHHHHhCCCCCceeEEeCCCCCcHHHHHHHHHHHc---CCCeEEeccc
Q 035603 185 YFEHPATFDTLAMASKKKEAIKKDLIKFTEGKEYYAKIGKAWKRGYLLFGPPGTGKSTMIAAMANCL---NYDVYDLELT 261 (431)
Q Consensus 185 ~~~~p~~f~~l~g~~~~k~~i~~~l~~~~~~~~~~~~~g~~~~rg~LL~GPPGtGKTsla~aiA~~l---~~~i~~l~~~ 261 (431)
....+.+|++.++.+.. .....+... + .......++||||||||||+|++|+|+++ +.....++..
T Consensus 8 ~~~~~~~fd~f~~~~~~--~~~~~~~~~------~---~~~~~~~l~l~G~~G~GKThL~~ai~~~~~~~~~~~~y~~~~ 76 (229)
T PRK06893 8 HQIDDETLDNFYADNNL--LLLDSLRKN------F---IDLQQPFFYIWGGKSSGKSHLLKAVSNHYLLNQRTAIYIPLS 76 (229)
T ss_pred CCCCcccccccccCChH--HHHHHHHHH------h---hccCCCeEEEECCCCCCHHHHHHHHHHHHHHcCCCeEEeeHH
Confidence 44566899999876542 122222111 1 11123468999999999999999999986 3344444443
Q ss_pred CcCChHHHHHHHHHhhhc-----cc-----chhhHHHHHHHHhcCcccCCCCceEEEEec-CCCCCCC---hhhhccCce
Q 035603 262 SVENNNELRSLLVDISSK-----KK-----KSNVTLSGLLNCIGGLWSTCGGERIIVFTT-NHVDKLD---PALIRRGRM 327 (431)
Q Consensus 262 ~~~~~~~l~~l~~~~~~~-----~~-----~~~~~~s~lL~~ldg~~~~~~~~~ivI~TT-N~~~~Ld---~AllRpGRf 327 (431)
.... ...+++....+. ++ ........|++.++..... +..++|.|+ +.|..++ |.|.++.+.
T Consensus 77 ~~~~--~~~~~~~~~~~~dlLilDDi~~~~~~~~~~~~l~~l~n~~~~~--~~~illits~~~p~~l~~~~~~L~sRl~~ 152 (229)
T PRK06893 77 KSQY--FSPAVLENLEQQDLVCLDDLQAVIGNEEWELAIFDLFNRIKEQ--GKTLLLISADCSPHALSIKLPDLASRLTW 152 (229)
T ss_pred Hhhh--hhHHHHhhcccCCEEEEeChhhhcCChHHHHHHHHHHHHHHHc--CCcEEEEeCCCChHHccccchhHHHHHhc
Confidence 2110 111222111111 11 1111222455555544322 224555554 4566554 899986666
Q ss_pred eEEEEcCCCCHHHHHHHHHHhhc
Q 035603 328 DKHIEMPYCCFEAFKVLAKNYLE 350 (431)
Q Consensus 328 d~~I~~~~p~~~~r~~i~~~~l~ 350 (431)
...+.++.|+.+.+..+++....
T Consensus 153 g~~~~l~~pd~e~~~~iL~~~a~ 175 (229)
T PRK06893 153 GEIYQLNDLTDEQKIIVLQRNAY 175 (229)
T ss_pred CCeeeCCCCCHHHHHHHHHHHHH
Confidence 78999999999999999887653
No 112
>PRK07471 DNA polymerase III subunit delta'; Validated
Probab=99.16 E-value=2.4e-09 Score=108.47 Aligned_cols=144 Identities=18% Similarity=0.226 Sum_probs=102.2
Q ss_pred cCCCCccccccChhhHHHHHHHHHHHHhCHHHHHHhCCCCCceeEEeCCCCCcHHHHHHHHHHHcCCC------------
Q 035603 187 EHPATFDTLAMASKKKEAIKKDLIKFTEGKEYYAKIGKAWKRGYLLFGPPGTGKSTMIAAMANCLNYD------------ 254 (431)
Q Consensus 187 ~~p~~f~~l~g~~~~k~~i~~~l~~~~~~~~~~~~~g~~~~rg~LL~GPPGtGKTsla~aiA~~l~~~------------ 254 (431)
.+|+++++|+|.+++++.|.+.+.. | ..+.++||+||+|+||+++|.++|+.+-+.
T Consensus 13 ~~P~~~~~iiGq~~~~~~L~~~~~~-----------~-rl~HA~Lf~Gp~G~GK~~lA~~~A~~Llc~~~~~~~~~~~~~ 80 (365)
T PRK07471 13 PHPRETTALFGHAAAEAALLDAYRS-----------G-RLHHAWLIGGPQGIGKATLAYRMARFLLATPPPGGDGAVPPP 80 (365)
T ss_pred CCCCchhhccChHHHHHHHHHHHHc-----------C-CCCceEEEECCCCCCHHHHHHHHHHHHhCCCCCCCCcccccc
Confidence 5899999999999999888754432 1 235689999999999999999999977431
Q ss_pred ----------------------eEEeccc--CcC-------ChHHHHHHHHHhhhc--------------ccchhhHHHH
Q 035603 255 ----------------------VYDLELT--SVE-------NNNELRSLLVDISSK--------------KKKSNVTLSG 289 (431)
Q Consensus 255 ----------------------i~~l~~~--~~~-------~~~~l~~l~~~~~~~--------------~~~~~~~~s~ 289 (431)
++.+... +-. ..++++++....... +..+....+.
T Consensus 81 ~~l~~~~~c~~c~~i~~~~HPDl~~i~~~~~~~~~~~~~~I~VdqiR~l~~~~~~~~~~~~~kVviIDead~m~~~aana 160 (365)
T PRK07471 81 TSLAIDPDHPVARRIAAGAHGGLLTLERSWNEKGKRLRTVITVDEVRELISFFGLTAAEGGWRVVIVDTADEMNANAANA 160 (365)
T ss_pred ccccCCCCChHHHHHHccCCCCeEEEecccccccccccccccHHHHHHHHHHhCcCcccCCCEEEEEechHhcCHHHHHH
Confidence 2222210 100 124455554433221 3345567788
Q ss_pred HHHHhcCcccCCCCceEEEEecCCCCCCChhhhccCceeEEEEcCCCCHHHHHHHHHHhh
Q 035603 290 LLNCIGGLWSTCGGERIIVFTTNHVDKLDPALIRRGRMDKHIEMPYCCFEAFKVLAKNYL 349 (431)
Q Consensus 290 lL~~ldg~~~~~~~~~ivI~TTN~~~~Ld~AllRpGRfd~~I~~~~p~~~~r~~i~~~~l 349 (431)
||..+... ....++|++|+.++.+.|.+++ |. ..|.|+.|+.++..+++....
T Consensus 161 LLK~LEep----p~~~~~IL~t~~~~~llpti~S--Rc-~~i~l~~l~~~~i~~~L~~~~ 213 (365)
T PRK07471 161 LLKVLEEP----PARSLFLLVSHAPARLLPTIRS--RC-RKLRLRPLAPEDVIDALAAAG 213 (365)
T ss_pred HHHHHhcC----CCCeEEEEEECCchhchHHhhc--cc-eEEECCCCCHHHHHHHHHHhc
Confidence 99888843 3457888999999999999887 54 689999999998888887754
No 113
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=99.16 E-value=2.9e-10 Score=107.14 Aligned_cols=148 Identities=16% Similarity=0.176 Sum_probs=85.7
Q ss_pred ccCCCCccccccChhhHHHHHHHHHHHHhCHHHHHHhCCCCCceeEEeCCCCCcHHHHHHHHHHHc---CCCeEEecccC
Q 035603 186 FEHPATFDTLAMASKKKEAIKKDLIKFTEGKEYYAKIGKAWKRGYLLFGPPGTGKSTMIAAMANCL---NYDVYDLELTS 262 (431)
Q Consensus 186 ~~~p~~f~~l~g~~~~k~~i~~~l~~~~~~~~~~~~~g~~~~rg~LL~GPPGtGKTsla~aiA~~l---~~~i~~l~~~~ 262 (431)
...+.+|++.+.. ..+.+.+.+..+.. ...++.++|+||||||||++++++++++ +.+++.+++..
T Consensus 8 ~~~~~~~~~~~~~--~~~~~~~~l~~~~~---------~~~~~~lll~G~~G~GKT~la~~~~~~~~~~~~~~~~i~~~~ 76 (226)
T TIGR03420 8 LPDDPTFDNFYAG--GNAELLAALRQLAA---------GKGDRFLYLWGESGSGKSHLLQAACAAAEERGKSAIYLPLAE 76 (226)
T ss_pred CCCchhhcCcCcC--CcHHHHHHHHHHHh---------cCCCCeEEEECCCCCCHHHHHHHHHHHHHhcCCcEEEEeHHH
Confidence 3445778888732 22333444444432 1235789999999999999999999876 46777777766
Q ss_pred cCChHHHHHHHHHhhhc-----ccc---hh--hHHHHHHHHhcCcccCCCCceEEEEecC-CCCCCC---hhhhccCcee
Q 035603 263 VENNNELRSLLVDISSK-----KKK---SN--VTLSGLLNCIGGLWSTCGGERIIVFTTN-HVDKLD---PALIRRGRMD 328 (431)
Q Consensus 263 ~~~~~~l~~l~~~~~~~-----~~~---~~--~~~s~lL~~ldg~~~~~~~~~ivI~TTN-~~~~Ld---~AllRpGRfd 328 (431)
+... ...++...... +.. .. .....|...++..... + ..+|+|+| .+..++ +.|.++..+.
T Consensus 77 ~~~~--~~~~~~~~~~~~lLvIDdi~~l~~~~~~~~~L~~~l~~~~~~-~--~~iIits~~~~~~~~~~~~~L~~r~~~~ 151 (226)
T TIGR03420 77 LAQA--DPEVLEGLEQADLVCLDDVEAIAGQPEWQEALFHLYNRVREA-G--GRLLIAGRAAPAQLPLRLPDLRTRLAWG 151 (226)
T ss_pred HHHh--HHHHHhhcccCCEEEEeChhhhcCChHHHHHHHHHHHHHHHc-C--CeEEEECCCChHHCCcccHHHHHHHhcC
Confidence 5321 12222211111 111 11 1134455555543222 1 23444554 444432 7888722235
Q ss_pred EEEEcCCCCHHHHHHHHHHhh
Q 035603 329 KHIEMPYCCFEAFKVLAKNYL 349 (431)
Q Consensus 329 ~~I~~~~p~~~~r~~i~~~~l 349 (431)
.+|.+|.|+.+++..+++.+.
T Consensus 152 ~~i~l~~l~~~e~~~~l~~~~ 172 (226)
T TIGR03420 152 LVFQLPPLSDEEKIAALQSRA 172 (226)
T ss_pred eeEecCCCCHHHHHHHHHHHH
Confidence 889999999999998887664
No 114
>PRK05342 clpX ATP-dependent protease ATP-binding subunit ClpX; Provisional
Probab=99.14 E-value=1e-09 Score=112.73 Aligned_cols=72 Identities=19% Similarity=0.245 Sum_probs=52.9
Q ss_pred cc-ccccChhhHHHHHHHHHHHHhCHHHHHH--hCCC-CCceeEEeCCCCCcHHHHHHHHHHHcCCCeEEecccCc
Q 035603 192 FD-TLAMASKKKEAIKKDLIKFTEGKEYYAK--IGKA-WKRGYLLFGPPGTGKSTMIAAMANCLNYDVYDLELTSV 263 (431)
Q Consensus 192 f~-~l~g~~~~k~~i~~~l~~~~~~~~~~~~--~g~~-~~rg~LL~GPPGtGKTsla~aiA~~l~~~i~~l~~~~~ 263 (431)
++ .|+|++++|+.+...+......-..... -+++ ...++||+||||||||++|+++|..++.+++.++++.+
T Consensus 69 L~~~ViGq~~ak~~l~~av~~~~~r~~~~~~~~~~~~~~~~~iLl~Gp~GtGKT~lAr~lA~~l~~pf~~id~~~l 144 (412)
T PRK05342 69 LDQYVIGQERAKKVLSVAVYNHYKRLRHGDKKDDDVELQKSNILLIGPTGSGKTLLAQTLARILDVPFAIADATTL 144 (412)
T ss_pred HhhHeeChHHHHHHHHHHHHHHHHhhhcccccccccccCCceEEEEcCCCCCHHHHHHHHHHHhCCCceecchhhc
Confidence 54 3899999999987666544332110000 0112 35689999999999999999999999999999998765
No 115
>smart00763 AAA_PrkA PrkA AAA domain. This is a family of PrkA bacterial and archaeal serine kinases approximately 630 residues long. This is the N-terminal AAA domain.
Probab=99.14 E-value=1.1e-09 Score=109.46 Aligned_cols=64 Identities=22% Similarity=0.353 Sum_probs=51.3
Q ss_pred CCcc-ccccChhhHHHHHHHHHHHHhCHHHHHHhCCCCCceeEEeCCCCCcHHHHHHHHHHHcCC-------CeEEecc
Q 035603 190 ATFD-TLAMASKKKEAIKKDLIKFTEGKEYYAKIGKAWKRGYLLFGPPGTGKSTMIAAMANCLNY-------DVYDLEL 260 (431)
Q Consensus 190 ~~f~-~l~g~~~~k~~i~~~l~~~~~~~~~~~~~g~~~~rg~LL~GPPGtGKTsla~aiA~~l~~-------~i~~l~~ 260 (431)
.-|+ ++.|.++.+++|.+.+.....+ . -..++.++|+|||||||||||++||+.++. ++|.+..
T Consensus 47 ~~F~~~~~G~~~~i~~lv~~l~~~a~g------~-~~~r~il~L~GPPGsGKStla~~La~~l~~ys~t~eG~~Y~~~~ 118 (361)
T smart00763 47 RFFDHDFFGMEEAIERFVNYFKSAAQG------L-EERKQILYLLGPVGGGKSSLVECLKRGLEEYSKTPEGRRYTFKW 118 (361)
T ss_pred cccchhccCcHHHHHHHHHHHHHHHhc------C-CCCCcEEEEECCCCCCHHHHHHHHHHHHhhhcccccCceEEEEe
Confidence 3477 8999999999888776655431 1 234578899999999999999999999987 8888866
No 116
>PRK08903 DnaA regulatory inactivator Hda; Validated
Probab=99.13 E-value=1.2e-09 Score=103.49 Aligned_cols=145 Identities=16% Similarity=0.169 Sum_probs=85.0
Q ss_pred eccCCCCccccccChhhHHHHHHHHHHHHhCHHHHHHhCCCCCceeEEeCCCCCcHHHHHHHHHHHc---CCCeEEeccc
Q 035603 185 YFEHPATFDTLAMASKKKEAIKKDLIKFTEGKEYYAKIGKAWKRGYLLFGPPGTGKSTMIAAMANCL---NYDVYDLELT 261 (431)
Q Consensus 185 ~~~~p~~f~~l~g~~~~k~~i~~~l~~~~~~~~~~~~~g~~~~rg~LL~GPPGtGKTsla~aiA~~l---~~~i~~l~~~ 261 (431)
+...|.+|+++.+..+ +.+...+..+.. +....++++|+||||||||+|++++++++ +..++.+++.
T Consensus 10 ~~~~~~~~d~f~~~~~--~~~~~~l~~~~~--------~~~~~~~~~l~G~~G~GKT~La~ai~~~~~~~~~~~~~i~~~ 79 (227)
T PRK08903 10 GPPPPPTFDNFVAGEN--AELVARLRELAA--------GPVADRFFYLWGEAGSGRSHLLQALVADASYGGRNARYLDAA 79 (227)
T ss_pred CCCChhhhcccccCCc--HHHHHHHHHHHh--------ccCCCCeEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEEehH
Confidence 4456688999773321 223333333322 23445789999999999999999999875 5567777765
Q ss_pred CcCChHHHHHHHHHhhh-c-------ccchhhHHHHHHHHhcCcccCCCCceEEEEecCCCC---CCChhhhccCce--e
Q 035603 262 SVENNNELRSLLVDISS-K-------KKKSNVTLSGLLNCIGGLWSTCGGERIIVFTTNHVD---KLDPALIRRGRM--D 328 (431)
Q Consensus 262 ~~~~~~~l~~l~~~~~~-~-------~~~~~~~~s~lL~~ldg~~~~~~~~~ivI~TTN~~~---~Ld~AllRpGRf--d 328 (431)
..... +..... . +.........|+..++..... +..++|+|++.+. .+.+.|.. |+ .
T Consensus 80 ~~~~~------~~~~~~~~~liiDdi~~l~~~~~~~L~~~~~~~~~~--~~~~vl~~~~~~~~~~~l~~~L~s--r~~~~ 149 (227)
T PRK08903 80 SPLLA------FDFDPEAELYAVDDVERLDDAQQIALFNLFNRVRAH--GQGALLVAGPAAPLALPLREDLRT--RLGWG 149 (227)
T ss_pred HhHHH------HhhcccCCEEEEeChhhcCchHHHHHHHHHHHHHHc--CCcEEEEeCCCCHHhCCCCHHHHH--HHhcC
Confidence 53211 111111 0 111122334455555544322 2245666665432 35677876 55 5
Q ss_pred EEEEcCCCCHHHHHHHHHHhh
Q 035603 329 KHIEMPYCCFEAFKVLAKNYL 349 (431)
Q Consensus 329 ~~I~~~~p~~~~r~~i~~~~l 349 (431)
..|++|.|+.+.+..++..+.
T Consensus 150 ~~i~l~pl~~~~~~~~l~~~~ 170 (227)
T PRK08903 150 LVYELKPLSDADKIAALKAAA 170 (227)
T ss_pred eEEEecCCCHHHHHHHHHHHH
Confidence 799999999888777766543
No 117
>COG0714 MoxR-like ATPases [General function prediction only]
Probab=99.12 E-value=2e-09 Score=107.80 Aligned_cols=122 Identities=20% Similarity=0.189 Sum_probs=86.9
Q ss_pred CceeEEeCCCCCcHHHHHHHHHHHcCCCeEEecccCcCChHHHHHHHHHhh----hc----------------------c
Q 035603 227 KRGYLLFGPPGTGKSTMIAAMANCLNYDVYDLELTSVENNNELRSLLVDIS----SK----------------------K 280 (431)
Q Consensus 227 ~rg~LL~GPPGtGKTsla~aiA~~l~~~i~~l~~~~~~~~~~l~~l~~~~~----~~----------------------~ 280 (431)
.+.+||-||||||||++|+++|..++.+++.+.++.-....++.....-.. .. +
T Consensus 43 ~~~vll~G~PG~gKT~la~~lA~~l~~~~~~i~~t~~l~p~d~~G~~~~~~~~~~~~~~~~~~gpl~~~~~~ill~DEIn 122 (329)
T COG0714 43 GGHVLLEGPPGVGKTLLARALARALGLPFVRIQCTPDLLPSDLLGTYAYAALLLEPGEFRFVPGPLFAAVRVILLLDEIN 122 (329)
T ss_pred CCCEEEECCCCccHHHHHHHHHHHhCCCeEEEecCCCCCHHHhcCchhHhhhhccCCeEEEecCCcccccceEEEEeccc
Confidence 468999999999999999999999999999999986544433322111111 11 3
Q ss_pred cchhhHHHHHHHHhcCc-------c-cCCCCceEEEEecC-----CCCCCChhhhccCceeEEEEcCCC-CHHHHHHHHH
Q 035603 281 KKSNVTLSGLLNCIGGL-------W-STCGGERIIVFTTN-----HVDKLDPALIRRGRMDKHIEMPYC-CFEAFKVLAK 346 (431)
Q Consensus 281 ~~~~~~~s~lL~~ldg~-------~-~~~~~~~ivI~TTN-----~~~~Ld~AllRpGRfd~~I~~~~p-~~~~r~~i~~ 346 (431)
.....+.+.||..|+.- . -.-....++|+|+| ....|++|+++ ||-..++++|| ..++...+..
T Consensus 123 ra~p~~q~aLl~~l~e~~vtv~~~~~~~~~~~f~viaT~Np~e~~g~~~l~eA~ld--Rf~~~~~v~yp~~~~e~~~i~~ 200 (329)
T COG0714 123 RAPPEVQNALLEALEERQVTVPGLTTIRLPPPFIVIATQNPGEYEGTYPLPEALLD--RFLLRIYVDYPDSEEEERIILA 200 (329)
T ss_pred cCCHHHHHHHHHHHhCcEEEECCcCCcCCCCCCEEEEccCccccCCCcCCCHHHHh--hEEEEEecCCCCchHHHHHHHH
Confidence 34567888888888751 1 11224478888989 55678999999 99999999999 5555555555
Q ss_pred Hhhc
Q 035603 347 NYLE 350 (431)
Q Consensus 347 ~~l~ 350 (431)
....
T Consensus 201 ~~~~ 204 (329)
T COG0714 201 RVGG 204 (329)
T ss_pred hCcc
Confidence 5443
No 118
>PRK09112 DNA polymerase III subunit delta'; Validated
Probab=99.12 E-value=6.6e-09 Score=104.73 Aligned_cols=143 Identities=15% Similarity=0.200 Sum_probs=98.7
Q ss_pred cCCCCccccccChhhHHHHHHHHHHHHhCHHHHHHhCCCCCceeEEeCCCCCcHHHHHHHHHHHcCCC-------e----
Q 035603 187 EHPATFDTLAMASKKKEAIKKDLIKFTEGKEYYAKIGKAWKRGYLLFGPPGTGKSTMIAAMANCLNYD-------V---- 255 (431)
Q Consensus 187 ~~p~~f~~l~g~~~~k~~i~~~l~~~~~~~~~~~~~g~~~~rg~LL~GPPGtGKTsla~aiA~~l~~~-------i---- 255 (431)
.||+.|+.|+|.+++++.+...+. . | ..+..+||+||+|+|||++|+++|+.+.+. .
T Consensus 17 ~~P~~~~~l~Gh~~a~~~L~~a~~----~-------g-rl~ha~L~~G~~G~GKttlA~~lA~~Llc~~~~~~~~~~~~~ 84 (351)
T PRK09112 17 PSPSENTRLFGHEEAEAFLAQAYR----E-------G-KLHHALLFEGPEGIGKATLAFHLANHILSHPDPAEAPETLAD 84 (351)
T ss_pred CCCCchhhccCcHHHHHHHHHHHH----c-------C-CCCeeEeeECCCCCCHHHHHHHHHHHHcCCCccccCccccCC
Confidence 589999999999999888765432 1 1 234589999999999999999999988651 1
Q ss_pred -------------------EEeccc-CcC--------ChHHHHHHHHHhhh---c-----------ccchhhHHHHHHHH
Q 035603 256 -------------------YDLELT-SVE--------NNNELRSLLVDISS---K-----------KKKSNVTLSGLLNC 293 (431)
Q Consensus 256 -------------------~~l~~~-~~~--------~~~~l~~l~~~~~~---~-----------~~~~~~~~s~lL~~ 293 (431)
+.+... +.. ..+.++.+...... . +.-.....+.||..
T Consensus 85 ~~~~c~~c~~i~~~~hPdl~~l~~~~~~~~~~~~~~I~vd~iR~l~~~l~~~~~~g~~rVviIDeAd~l~~~aanaLLk~ 164 (351)
T PRK09112 85 PDPASPVWRQIAQGAHPNLLHITRPFDEKTGKFKTAITVDEIRRVGHFLSQTSGDGNWRIVIIDPADDMNRNAANAILKT 164 (351)
T ss_pred CCCCCHHHHHHHcCCCCCEEEeecccccccccccccCCHHHHHHHHHHhhhccccCCceEEEEEchhhcCHHHHHHHHHH
Confidence 111100 000 12344443322111 1 33345567889999
Q ss_pred hcCcccCCCCceEEEEecCCCCCCChhhhccCceeEEEEcCCCCHHHHHHHHHHh
Q 035603 294 IGGLWSTCGGERIIVFTTNHVDKLDPALIRRGRMDKHIEMPYCCFEAFKVLAKNY 348 (431)
Q Consensus 294 ldg~~~~~~~~~ivI~TTN~~~~Ld~AllRpGRfd~~I~~~~p~~~~r~~i~~~~ 348 (431)
++.. ....++|+.|+.++.|.|.++. |. .++.+++|+.++...++...
T Consensus 165 LEEp----p~~~~fiLit~~~~~llptIrS--Rc-~~i~l~pl~~~~~~~~L~~~ 212 (351)
T PRK09112 165 LEEP----PARALFILISHSSGRLLPTIRS--RC-QPISLKPLDDDELKKALSHL 212 (351)
T ss_pred HhcC----CCCceEEEEECChhhccHHHHh--hc-cEEEecCCCHHHHHHHHHHh
Confidence 8753 3447777778889999999987 66 59999999999988888773
No 119
>PRK10865 protein disaggregation chaperone; Provisional
Probab=99.12 E-value=1.7e-09 Score=120.67 Aligned_cols=142 Identities=19% Similarity=0.280 Sum_probs=97.7
Q ss_pred CCCCccccccChhhHHHHHHHHHHHHhCHHHHHHhCCCCCceeEEeCCCCCcHHHHHHHHHHHc----------CCCeEE
Q 035603 188 HPATFDTLAMASKKKEAIKKDLIKFTEGKEYYAKIGKAWKRGYLLFGPPGTGKSTMIAAMANCL----------NYDVYD 257 (431)
Q Consensus 188 ~p~~f~~l~g~~~~k~~i~~~l~~~~~~~~~~~~~g~~~~rg~LL~GPPGtGKTsla~aiA~~l----------~~~i~~ 257 (431)
.|..++.++|.++..+.+++.+ .. ..+..++|+||||||||++++++|..+ +++++.
T Consensus 173 r~~~l~~vigr~~ei~~~i~iL----~r---------~~~~n~lL~G~pGvGKT~l~~~la~~i~~~~vp~~l~~~~~~~ 239 (857)
T PRK10865 173 EQGKLDPVIGRDEEIRRTIQVL----QR---------RTKNNPVLIGEPGVGKTAIVEGLAQRIINGEVPEGLKGRRVLA 239 (857)
T ss_pred hcCCCCcCCCCHHHHHHHHHHH----hc---------CCcCceEEECCCCCCHHHHHHHHHHHhhcCCCchhhCCCEEEE
Confidence 3667899999887655544432 11 124578999999999999999999987 788888
Q ss_pred ecccCcCC--------hHHHHHHHHHhhhc--------c----------cchhhHHHHHHHHhcCcccCCCCceEEEEec
Q 035603 258 LELTSVEN--------NNELRSLLVDISSK--------K----------KKSNVTLSGLLNCIGGLWSTCGGERIIVFTT 311 (431)
Q Consensus 258 l~~~~~~~--------~~~l~~l~~~~~~~--------~----------~~~~~~~s~lL~~ldg~~~~~~~~~ivI~TT 311 (431)
++++.+.. ...++++|...... + .........+|. ..- ..+.+.+|+||
T Consensus 240 l~l~~l~ag~~~~g~~e~~lk~~~~~~~~~~~~~ILfIDEih~l~~~~~~~~~~d~~~~lk---p~l--~~g~l~~IgaT 314 (857)
T PRK10865 240 LDMGALVAGAKYRGEFEERLKGVLNDLAKQEGNVILFIDELHTMVGAGKADGAMDAGNMLK---PAL--ARGELHCVGAT 314 (857)
T ss_pred EehhhhhhccchhhhhHHHHHHHHHHHHHcCCCeEEEEecHHHhccCCCCccchhHHHHhc---chh--hcCCCeEEEcC
Confidence 88776521 23577777654321 0 011111222222 221 23468999999
Q ss_pred CCCC-----CCChhhhccCceeEEEEcCCCCHHHHHHHHHHhhc
Q 035603 312 NHVD-----KLDPALIRRGRMDKHIEMPYCCFEAFKVLAKNYLE 350 (431)
Q Consensus 312 N~~~-----~Ld~AllRpGRfd~~I~~~~p~~~~r~~i~~~~l~ 350 (431)
+..+ .+|+||.| ||+ .|.++.|+.+++..|++....
T Consensus 315 t~~e~r~~~~~d~al~r--Rf~-~i~v~eP~~~~~~~iL~~l~~ 355 (857)
T PRK10865 315 TLDEYRQYIEKDAALER--RFQ-KVFVAEPSVEDTIAILRGLKE 355 (857)
T ss_pred CCHHHHHHhhhcHHHHh--hCC-EEEeCCCCHHHHHHHHHHHhh
Confidence 9877 48999999 997 588999999999998876543
No 120
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=99.11 E-value=1.3e-09 Score=121.37 Aligned_cols=140 Identities=18% Similarity=0.246 Sum_probs=95.0
Q ss_pred CCCCccccccChhhHHHHHHHHHHHHhCHHHHHHhCCCCCceeEEeCCCCCcHHHHHHHHHHHc----------CCCeEE
Q 035603 188 HPATFDTLAMASKKKEAIKKDLIKFTEGKEYYAKIGKAWKRGYLLFGPPGTGKSTMIAAMANCL----------NYDVYD 257 (431)
Q Consensus 188 ~p~~f~~l~g~~~~k~~i~~~l~~~~~~~~~~~~~g~~~~rg~LL~GPPGtGKTsla~aiA~~l----------~~~i~~ 257 (431)
.|.+++.++|.++....+++.+ .. ..+.+.+|+||||||||++++.+|..+ +..++.
T Consensus 182 r~~~ld~~iGr~~ei~~~i~~l---~r----------~~~~n~lLvG~pGvGKTal~~~La~~i~~~~v~~~l~~~~i~~ 248 (852)
T TIGR03345 182 REGKIDPVLGRDDEIRQMIDIL---LR----------RRQNNPILTGEAGVGKTAVVEGLALRIAAGDVPPALRNVRLLS 248 (852)
T ss_pred cCCCCCcccCCHHHHHHHHHHH---hc----------CCcCceeEECCCCCCHHHHHHHHHHHHhhCCCCccccCCeEEE
Confidence 4678999999887655544322 11 224588999999999999999999976 356777
Q ss_pred ecccCcCC--------hHHHHHHHHHhhhc---------------c-c---chhhHHHHHHHHhcCcccCCCCceEEEEe
Q 035603 258 LELTSVEN--------NNELRSLLVDISSK---------------K-K---KSNVTLSGLLNCIGGLWSTCGGERIIVFT 310 (431)
Q Consensus 258 l~~~~~~~--------~~~l~~l~~~~~~~---------------~-~---~~~~~~s~lL~~ldg~~~~~~~~~ivI~T 310 (431)
++++.+.. ...+++++.+.... . + .....-+-|+..+. .+.+.+|+|
T Consensus 249 l~l~~l~ag~~~~ge~e~~lk~ii~e~~~~~~~~ILfIDEih~l~~~g~~~~~~d~~n~Lkp~l~------~G~l~~Iga 322 (852)
T TIGR03345 249 LDLGLLQAGASVKGEFENRLKSVIDEVKASPQPIILFIDEAHTLIGAGGQAGQGDAANLLKPALA------RGELRTIAA 322 (852)
T ss_pred eehhhhhcccccchHHHHHHHHHHHHHHhcCCCeEEEEeChHHhccCCCccccccHHHHhhHHhh------CCCeEEEEe
Confidence 77765421 24677788766432 0 0 11111112333322 345889998
Q ss_pred cCCCC-----CCChhhhccCceeEEEEcCCCCHHHHHHHHHHhh
Q 035603 311 TNHVD-----KLDPALIRRGRMDKHIEMPYCCFEAFKVLAKNYL 349 (431)
Q Consensus 311 TN~~~-----~Ld~AllRpGRfd~~I~~~~p~~~~r~~i~~~~l 349 (431)
|+..+ .+||||.| ||. .|.++.|+.++...|++.+.
T Consensus 323 TT~~e~~~~~~~d~AL~r--Rf~-~i~v~eps~~~~~~iL~~~~ 363 (852)
T TIGR03345 323 TTWAEYKKYFEKDPALTR--RFQ-VVKVEEPDEETAIRMLRGLA 363 (852)
T ss_pred cCHHHHhhhhhccHHHHH--hCe-EEEeCCCCHHHHHHHHHHHH
Confidence 88643 48999999 995 79999999999999965544
No 121
>PRK13407 bchI magnesium chelatase subunit I; Provisional
Probab=99.11 E-value=1.4e-09 Score=108.66 Aligned_cols=147 Identities=22% Similarity=0.207 Sum_probs=94.5
Q ss_pred CCCCccccccChhhHHHHHHHHHHHHhCHHHHHHhCCCCCceeEEeCCCCCcHHHHHHHHHHHc-------CCCeEE--e
Q 035603 188 HPATFDTLAMASKKKEAIKKDLIKFTEGKEYYAKIGKAWKRGYLLFGPPGTGKSTMIAAMANCL-------NYDVYD--L 258 (431)
Q Consensus 188 ~p~~f~~l~g~~~~k~~i~~~l~~~~~~~~~~~~~g~~~~rg~LL~GPPGtGKTsla~aiA~~l-------~~~i~~--l 258 (431)
.|.+|++|+|.+++++.+.-.+.. +-..++||+||||||||++++++|+-+ ++++-. +
T Consensus 3 ~~~~f~~i~Gq~~~~~~l~~~~~~-------------~~~~~vLl~G~pG~gKT~lar~la~llP~~~~~e~~~~~~~~~ 69 (334)
T PRK13407 3 KPFPFSAIVGQEEMKQAMVLTAID-------------PGIGGVLVFGDRGTGKSTAVRALAALLPLIKAVEGCPVNSARP 69 (334)
T ss_pred CCCCHHHhCCHHHHHHHHHHHHhc-------------cCCCcEEEEcCCCCCHHHHHHHHHHHCCCcchhcccccccCcc
Confidence 467899999999998877532211 112479999999999999999999998 332111 0
Q ss_pred c----cc-----C-------------------cCChHHHHHHHHHhh------------hc-------ccchhhHHHHHH
Q 035603 259 E----LT-----S-------------------VENNNELRSLLVDIS------------SK-------KKKSNVTLSGLL 291 (431)
Q Consensus 259 ~----~~-----~-------------------~~~~~~l~~l~~~~~------------~~-------~~~~~~~~s~lL 291 (431)
. .. . +-+.-.+...+.... .. +.....+.+.|+
T Consensus 70 ~~~~~~~~~~~~~~~~~~~p~~~~p~~~t~~~l~G~~d~~~~l~~g~~~~~~G~l~~A~~GiL~lDEInrl~~~~q~~Ll 149 (334)
T PRK13407 70 EDCPEWAHVSSTTMIERPTPVVDLPLGVTEDRVVGALDIERALTRGEKAFEPGLLARANRGYLYIDEVNLLEDHIVDLLL 149 (334)
T ss_pred cCCcccccccCCcccccCCccccCCCCCCcceeecchhhhhhhhcCCeeecCCceEEcCCCeEEecChHhCCHHHHHHHH
Confidence 0 00 0 000001111110000 00 234566778888
Q ss_pred HHhcCc---------ccCCCCceEEEEecCCCC-CCChhhhccCceeEEEEcCCCCH-HHHHHHHHHhh
Q 035603 292 NCIGGL---------WSTCGGERIIVFTTNHVD-KLDPALIRRGRMDKHIEMPYCCF-EAFKVLAKNYL 349 (431)
Q Consensus 292 ~~ldg~---------~~~~~~~~ivI~TTN~~~-~Ld~AllRpGRfd~~I~~~~p~~-~~r~~i~~~~l 349 (431)
+.|+.- .......+++|+|+|..+ .++++|+. ||...|.+++|.. +++.++++...
T Consensus 150 e~mee~~v~v~r~G~~~~~p~rfiviAt~NP~e~~l~~aLld--RF~~~v~v~~~~~~~e~~~il~~~~ 216 (334)
T PRK13407 150 DVAQSGENVVEREGLSIRHPARFVLVGSGNPEEGELRPQLLD--RFGLSVEVRSPRDVETRVEVIRRRD 216 (334)
T ss_pred HHHHcCCeEEEECCeEEecCCCEEEEecCCcccCCCCHHHHh--hcceEEEcCCCCcHHHHHHHHHHhh
Confidence 888532 111234578889999655 69999999 9999999999976 88888888754
No 122
>TIGR00362 DnaA chromosomal replication initiator protein DnaA. DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006).
Probab=99.10 E-value=1.2e-09 Score=112.41 Aligned_cols=182 Identities=17% Similarity=0.221 Sum_probs=103.4
Q ss_pred eccCCCCccc-cccChhhHHHHHHHHHHHHhCHHHHHHhCCCCCceeEEeCCCCCcHHHHHHHHHHHc-----CCCeEEe
Q 035603 185 YFEHPATFDT-LAMASKKKEAIKKDLIKFTEGKEYYAKIGKAWKRGYLLFGPPGTGKSTMIAAMANCL-----NYDVYDL 258 (431)
Q Consensus 185 ~~~~p~~f~~-l~g~~~~k~~i~~~l~~~~~~~~~~~~~g~~~~rg~LL~GPPGtGKTsla~aiA~~l-----~~~i~~l 258 (431)
.+.+..+|++ ++|.... .....+..+...+ |. ...+++||||||||||+|++|+|+++ +..++.+
T Consensus 102 ~l~~~~tfd~fi~g~~n~--~a~~~~~~~~~~~------~~-~~n~l~l~G~~G~GKThL~~ai~~~l~~~~~~~~v~yi 172 (405)
T TIGR00362 102 PLNPKYTFDNFVVGKSNR--LAHAAALAVAENP------GK-AYNPLFIYGGVGLGKTHLLHAIGNEILENNPNAKVVYV 172 (405)
T ss_pred CCCCCCcccccccCCcHH--HHHHHHHHHHhCc------Cc-cCCeEEEECCCCCcHHHHHHHHHHHHHHhCCCCcEEEE
Confidence 3555678999 4554332 1233344333321 21 23579999999999999999999987 5677777
Q ss_pred cccCcCCh-------HHHHHHHHHhhhc-----cc-----chhhHHHHHHHHhcCcccCCCCceEEEEecCCCC---CCC
Q 035603 259 ELTSVENN-------NELRSLLVDISSK-----KK-----KSNVTLSGLLNCIGGLWSTCGGERIIVFTTNHVD---KLD 318 (431)
Q Consensus 259 ~~~~~~~~-------~~l~~l~~~~~~~-----~~-----~~~~~~s~lL~~ldg~~~~~~~~~ivI~TTN~~~---~Ld 318 (431)
++.++... ..+..+....... ++ ....+...|+..++.+... +..+||.++..|. .++
T Consensus 173 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~dlLiiDDi~~l~~~~~~~~~l~~~~n~~~~~--~~~iiits~~~p~~l~~l~ 250 (405)
T TIGR00362 173 SSEKFTNDFVNALRNNKMEEFKEKYRSVDLLLIDDIQFLAGKERTQEEFFHTFNALHEN--GKQIVLTSDRPPKELPGLE 250 (405)
T ss_pred EHHHHHHHHHHHHHcCCHHHHHHHHHhCCEEEEehhhhhcCCHHHHHHHHHHHHHHHHC--CCCEEEecCCCHHHHhhhh
Confidence 76543110 0000111100001 11 1112334566666655332 2245554444554 366
Q ss_pred hhhhccCcee--EEEEcCCCCHHHHHHHHHHhhchhcchhHH-HHHhHhccCCCCHHHHHHHhc
Q 035603 319 PALIRRGRMD--KHIEMPYCCFEAFKVLAKNYLEIESHELFH-EIGSLLGETDITPADVAENLM 379 (431)
Q Consensus 319 ~AllRpGRfd--~~I~~~~p~~~~r~~i~~~~l~~~~~~~~~-~i~~l~~~~~~s~adI~~~l~ 379 (431)
+.+.. ||. ..++++.|+.++|..|++.........+.+ .+.-++....=+..++.+.+.
T Consensus 251 ~~l~S--Rl~~g~~v~i~~pd~~~r~~il~~~~~~~~~~l~~e~l~~ia~~~~~~~r~l~~~l~ 312 (405)
T TIGR00362 251 ERLRS--RFEWGLVVDIEPPDLETRLAILQKKAEEEGLELPDEVLEFIAKNIRSNVRELEGALN 312 (405)
T ss_pred hhhhh--hccCCeEEEeCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHhcCCCHHHHHHHHH
Confidence 88887 885 589999999999999999987654333323 334445544555566555443
No 123
>TIGR01650 PD_CobS cobaltochelatase, CobS subunit. This model describes the aerobic cobalamin pathway Pseudomonas denitrificans CobS gene product, which is a cobalt chelatase subunit, with a MW ~37 kDa. The aerobic pathway cobalt chelatase is a heterotrimeric, ATP-dependent enzyme that catalyzes cobalt insertion during cobalamin biosynthesis. The other two subunits are the P. denitrificans CobT (TIGR01651) and CobN (pfam02514 CobN/Magnesium Chelatase) proteins. To avoid potential confusion with the nonhomologous Salmonella typhimurium/E.coli cobS gene product, the P. denitrificans gene symbol is not used in the name of this model.
Probab=99.09 E-value=5.6e-10 Score=110.38 Aligned_cols=122 Identities=18% Similarity=0.170 Sum_probs=84.2
Q ss_pred CCceeEEeCCCCCcHHHHHHHHHHHcCCCeEEecccCcCChHHHHH------------------HHHHhhhc--------
Q 035603 226 WKRGYLLFGPPGTGKSTMIAAMANCLNYDVYDLELTSVENNNELRS------------------LLVDISSK-------- 279 (431)
Q Consensus 226 ~~rg~LL~GPPGtGKTsla~aiA~~l~~~i~~l~~~~~~~~~~l~~------------------l~~~~~~~-------- 279 (431)
.++.+||.||||||||++++.+|..++++++.++++......++-. .+..+...
T Consensus 63 ~~~~ilL~G~pGtGKTtla~~lA~~l~~~~~rV~~~~~l~~~DliG~~~~~l~~g~~~~~f~~GpL~~A~~~g~illlDE 142 (327)
T TIGR01650 63 YDRRVMVQGYHGTGKSTHIEQIAARLNWPCVRVNLDSHVSRIDLVGKDAIVLKDGKQITEFRDGILPWALQHNVALCFDE 142 (327)
T ss_pred cCCcEEEEeCCCChHHHHHHHHHHHHCCCeEEEEecCCCChhhcCCCceeeccCCcceeEEecCcchhHHhCCeEEEech
Confidence 3578999999999999999999999999999998765422211110 11111111
Q ss_pred -ccchhhHHHHHHHHhcC---ccc-------CCCCceEEEEecCCCC------------CCChhhhccCceeEEEEcCCC
Q 035603 280 -KKKSNVTLSGLLNCIGG---LWS-------TCGGERIIVFTTNHVD------------KLDPALIRRGRMDKHIEMPYC 336 (431)
Q Consensus 280 -~~~~~~~~s~lL~~ldg---~~~-------~~~~~~ivI~TTN~~~------------~Ld~AllRpGRfd~~I~~~~p 336 (431)
+.....+.+.|...||. +.- .+.....+|+|+|..+ .|++|++. ||-+.+.++||
T Consensus 143 in~a~p~~~~~L~~lLE~~~~l~i~~~~~~i~~hp~FrviAT~Np~g~Gd~~G~y~Gt~~l~~A~lD--RF~i~~~~~Yp 220 (327)
T TIGR01650 143 YDAGRPDVMFVIQRVLEAGGKLTLLDQNRVIRAHPAFRLFATANTIGLGDTTGLYHGTQQINQAQMD--RWSIVTTLNYL 220 (327)
T ss_pred hhccCHHHHHHHHHHhccCCeEEECCCceEecCCCCeEEEEeeCCCCcCCCCcceeeeecCCHHHHh--heeeEeeCCCC
Confidence 23344566666666552 100 1223467999999865 46899999 99999999999
Q ss_pred CHHHHHHHHHHhh
Q 035603 337 CFEAFKVLAKNYL 349 (431)
Q Consensus 337 ~~~~r~~i~~~~l 349 (431)
+.+.-..|+....
T Consensus 221 ~~e~E~~Il~~~~ 233 (327)
T TIGR01650 221 EHDNEAAIVLAKA 233 (327)
T ss_pred CHHHHHHHHHhhc
Confidence 9998888877653
No 124
>TIGR00382 clpX endopeptidase Clp ATP-binding regulatory subunit (clpX). A member of the ATP-dependent proteases, ClpX has ATP-dependent chaperone activity and is required for specific ATP-dependent proteolytic activities expressed by ClpPX. The gene is also found to be involved in stress tolerance in Bacillus subtilis and is essential for the efficient acquisition of genes specifying type IA and IB restriction.
Probab=99.08 E-value=2.6e-09 Score=109.28 Aligned_cols=154 Identities=22% Similarity=0.212 Sum_probs=96.9
Q ss_pred ccccChhhHHHHHHHHHHHHhCHHHH----HHhCCCC-CceeEEeCCCCCcHHHHHHHHHHHcCCCeEEecccCcCC---
Q 035603 194 TLAMASKKKEAIKKDLIKFTEGKEYY----AKIGKAW-KRGYLLFGPPGTGKSTMIAAMANCLNYDVYDLELTSVEN--- 265 (431)
Q Consensus 194 ~l~g~~~~k~~i~~~l~~~~~~~~~~----~~~g~~~-~rg~LL~GPPGtGKTsla~aiA~~l~~~i~~l~~~~~~~--- 265 (431)
.|+|+++.++.+...+......-... ..-+++. +..+||+||||||||++|+++|..++.++..++++.+..
T Consensus 78 ~ViGQe~A~~~l~~av~~h~~~~~~~~~~~~~~~~~~~~~~iLL~GP~GsGKT~lAraLA~~l~~pf~~~da~~L~~~gy 157 (413)
T TIGR00382 78 YVIGQEQAKKVLSVAVYNHYKRLNFEKNKKSDNGVELSKSNILLIGPTGSGKTLLAQTLARILNVPFAIADATTLTEAGY 157 (413)
T ss_pred eecCHHHHHHHHHHHHHHHHhhhccccccccccccccCCceEEEECCCCcCHHHHHHHHHHhcCCCeEEechhhcccccc
Confidence 36999999998876664333221000 0001111 357999999999999999999999999999888766421
Q ss_pred -----hHHHHHHHHHhhh-------c-------ccc--------------hhhHHHHHHHHhcCcccC---------CCC
Q 035603 266 -----NNELRSLLVDISS-------K-------KKK--------------SNVTLSGLLNCIGGLWST---------CGG 303 (431)
Q Consensus 266 -----~~~l~~l~~~~~~-------~-------~~~--------------~~~~~s~lL~~ldg~~~~---------~~~ 303 (431)
...+..++..... . +.. ...+.+.||+.|+|.... +..
T Consensus 158 vG~d~e~~L~~~~~~~~~~l~~a~~gIV~lDEIdkl~~~~~~~s~~~dvsg~~vq~~LL~iLeG~~~~v~~~~gr~~~~~ 237 (413)
T TIGR00382 158 VGEDVENILLKLLQAADYDVEKAQKGIIYIDEIDKISRKSENPSITRDVSGEGVQQALLKIIEGTVANVPPQGGRKHPYQ 237 (413)
T ss_pred ccccHHHHHHHHHHhCcccHHhcccceEEecccchhchhhccccccccccchhHHHHHHHHhhccceecccCCCccccCC
Confidence 1123333221110 0 000 114678899999886421 113
Q ss_pred ceEEEEecCCCC--------------------------------------------------CCChhhhccCceeEEEEc
Q 035603 304 ERIIVFTTNHVD--------------------------------------------------KLDPALIRRGRMDKHIEM 333 (431)
Q Consensus 304 ~~ivI~TTN~~~--------------------------------------------------~Ld~AllRpGRfd~~I~~ 333 (431)
+.++|+|+|-.. .+.|+|+ ||+|..+.|
T Consensus 238 ~~i~i~TsNilfi~~Gaf~g~~~i~~~r~~~~~~gf~~~~~~~~~~~~~~~~~~~~~dl~~~g~~PEfl--gRld~Iv~f 315 (413)
T TIGR00382 238 EFIQIDTSNILFICGGAFVGLEKIIKKRTGKSSIGFGAEVKKKSKEKADLLRQVEPEDLVKFGLIPEFI--GRLPVIATL 315 (413)
T ss_pred CeEEEEcCCceeeecccccChHHHHHHHhhhccccccccccccchhhHHHHHHHHHHHHHHHhhHHHHh--CCCCeEeec
Confidence 468999988610 0234454 499999999
Q ss_pred CCCCHHHHHHHHHHhh
Q 035603 334 PYCCFEAFKVLAKNYL 349 (431)
Q Consensus 334 ~~p~~~~r~~i~~~~l 349 (431)
.+.+.+....|+...+
T Consensus 316 ~pL~~~~L~~Il~~~~ 331 (413)
T TIGR00382 316 EKLDEEALIAILTKPK 331 (413)
T ss_pred CCCCHHHHHHHHHHHH
Confidence 8889888888876543
No 125
>TIGR02928 orc1/cdc6 family replication initiation protein. Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other.
Probab=99.07 E-value=5e-09 Score=106.03 Aligned_cols=147 Identities=16% Similarity=0.198 Sum_probs=94.4
Q ss_pred ccccccChhhHHHHHHHHHHHHhCHHHHHHhCCCCCceeEEeCCCCCcHHHHHHHHHHHcC---------CCeEEecccC
Q 035603 192 FDTLAMASKKKEAIKKDLIKFTEGKEYYAKIGKAWKRGYLLFGPPGTGKSTMIAAMANCLN---------YDVYDLELTS 262 (431)
Q Consensus 192 f~~l~g~~~~k~~i~~~l~~~~~~~~~~~~~g~~~~rg~LL~GPPGtGKTsla~aiA~~l~---------~~i~~l~~~~ 262 (431)
.+.+.|-++..+.|...+...+.+ ..+..++++||||||||++++++++++. +.++.+++..
T Consensus 14 p~~l~gRe~e~~~l~~~l~~~~~~---------~~~~~i~I~G~~GtGKT~l~~~~~~~l~~~~~~~~~~~~~v~in~~~ 84 (365)
T TIGR02928 14 PDRIVHRDEQIEELAKALRPILRG---------SRPSNVFIYGKTGTGKTAVTKYVMKELEEAAEDRDVRVVTVYVNCQI 84 (365)
T ss_pred CCCCCCcHHHHHHHHHHHHHHHcC---------CCCCcEEEECCCCCCHHHHHHHHHHHHHHHhhccCCceEEEEEECCC
Confidence 357888888888887777655432 2245799999999999999999998763 4677788766
Q ss_pred cCChHH-HHHHHHHhh-------------------------hc--------ccc------hhhHHHHHHHHhcCcccCCC
Q 035603 263 VENNNE-LRSLLVDIS-------------------------SK--------KKK------SNVTLSGLLNCIGGLWSTCG 302 (431)
Q Consensus 263 ~~~~~~-l~~l~~~~~-------------------------~~--------~~~------~~~~~s~lL~~ldg~~~~~~ 302 (431)
..+... +..+..... .. ++. ....+..|+...+- ...++
T Consensus 85 ~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlvIDE~d~L~~~~~~~L~~l~~~~~~-~~~~~ 163 (365)
T TIGR02928 85 LDTLYQVLVELANQLRGSGEEVPTTGLSTSEVFRRLYKELNERGDSLIIVLDEIDYLVGDDDDLLYQLSRARSN-GDLDN 163 (365)
T ss_pred CCCHHHHHHHHHHHHhhcCCCCCCCCCCHHHHHHHHHHHHHhcCCeEEEEECchhhhccCCcHHHHhHhccccc-cCCCC
Confidence 543222 222222110 00 111 11122223222110 11122
Q ss_pred CceEEEEecCCCC---CCChhhhccCcee-EEEEcCCCCHHHHHHHHHHhhc
Q 035603 303 GERIIVFTTNHVD---KLDPALIRRGRMD-KHIEMPYCCFEAFKVLAKNYLE 350 (431)
Q Consensus 303 ~~~ivI~TTN~~~---~Ld~AllRpGRfd-~~I~~~~p~~~~r~~i~~~~l~ 350 (431)
..+.+|++||.++ .+++.+.+ ||. ..|+|++++.++..++++..+.
T Consensus 164 ~~v~lI~i~n~~~~~~~l~~~~~s--~~~~~~i~f~p~~~~e~~~il~~r~~ 213 (365)
T TIGR02928 164 AKVGVIGISNDLKFRENLDPRVKS--SLCEEEIIFPPYDAEELRDILENRAE 213 (365)
T ss_pred CeEEEEEEECCcchHhhcCHHHhc--cCCcceeeeCCCCHHHHHHHHHHHHH
Confidence 4588899999885 68888887 664 6799999999999999998875
No 126
>PRK10865 protein disaggregation chaperone; Provisional
Probab=99.07 E-value=3.4e-09 Score=118.30 Aligned_cols=199 Identities=16% Similarity=0.228 Sum_probs=120.5
Q ss_pred ccccccChhhHHHHHHHHHHHHhCHHHHHHhCCCCCceeEEeCCCCCcHHHHHHHHHHHc---CCCeEEecccCcCChHH
Q 035603 192 FDTLAMASKKKEAIKKDLIKFTEGKEYYAKIGKAWKRGYLLFGPPGTGKSTMIAAMANCL---NYDVYDLELTSVENNNE 268 (431)
Q Consensus 192 f~~l~g~~~~k~~i~~~l~~~~~~~~~~~~~g~~~~rg~LL~GPPGtGKTsla~aiA~~l---~~~i~~l~~~~~~~~~~ 268 (431)
++.|+|.+...+.|.+.+......-. ..+.| ...+||+||||||||++|++||..+ +.+++.++++.+.....
T Consensus 567 ~~~viGQ~~ai~~l~~~i~~~~~gl~---~~~~p-~~~~Lf~Gp~G~GKT~lA~aLa~~l~~~~~~~i~id~se~~~~~~ 642 (857)
T PRK10865 567 HHRVIGQNEAVEAVSNAIRRSRAGLS---DPNRP-IGSFLFLGPTGVGKTELCKALANFMFDSDDAMVRIDMSEFMEKHS 642 (857)
T ss_pred CCeEeCCHHHHHHHHHHHHHHHhccc---CCCCC-CceEEEECCCCCCHHHHHHHHHHHhhcCCCcEEEEEhHHhhhhhh
Confidence 45688999988888887765432100 00111 1258999999999999999999987 34688888877643333
Q ss_pred HHHHHH---------------Hhhhc-----------ccchhhHHHHHHHHhcCcc-cC-C-----CCceEEEEecCCC-
Q 035603 269 LRSLLV---------------DISSK-----------KKKSNVTLSGLLNCIGGLW-ST-C-----GGERIIVFTTNHV- 314 (431)
Q Consensus 269 l~~l~~---------------~~~~~-----------~~~~~~~~s~lL~~ldg~~-~~-~-----~~~~ivI~TTN~~- 314 (431)
+..++. ..... ...+....+.|++.+|.-. .. . -.+.+||+|||..
T Consensus 643 ~~~LiG~~pgy~g~~~~g~l~~~v~~~p~~vLllDEieka~~~v~~~Ll~ile~g~l~d~~gr~vd~rn~iiI~TSN~g~ 722 (857)
T PRK10865 643 VSRLVGAPPGYVGYEEGGYLTEAVRRRPYSVILLDEVEKAHPDVFNILLQVLDDGRLTDGQGRTVDFRNTVVIMTSNLGS 722 (857)
T ss_pred HHHHhCCCCcccccchhHHHHHHHHhCCCCeEEEeehhhCCHHHHHHHHHHHhhCceecCCceEEeecccEEEEeCCcch
Confidence 333331 11111 3335567788888886321 11 0 1236899999972
Q ss_pred ------------------------CCCChhhhccCceeEEEEcCCCCHHHHHHHHHHhhchhcchhHHHHHhHhccCCCC
Q 035603 315 ------------------------DKLDPALIRRGRMDKHIEMPYCCFEAFKVLAKNYLEIESHELFHEIGSLLGETDIT 370 (431)
Q Consensus 315 ------------------------~~Ld~AllRpGRfd~~I~~~~p~~~~r~~i~~~~l~~~~~~~~~~i~~l~~~~~~s 370 (431)
..+.|+|+. |+|..|.|.+++.+....|++.++... ...+...--...++
T Consensus 723 ~~~~~~~~~~~~~~~~~~~~~~~~~~f~PELln--Rld~iivF~PL~~edl~~Iv~~~L~~l----~~rl~~~gi~l~is 796 (857)
T PRK10865 723 DLIQERFGELDYAHMKELVLGVVSHNFRPEFIN--RIDEVVVFHPLGEQHIASIAQIQLQRL----YKRLEERGYEIHIS 796 (857)
T ss_pred HHHHHhccccchHHHHHHHHHHHcccccHHHHH--hCCeeEecCCCCHHHHHHHHHHHHHHH----HHHHHhCCCcCcCC
Confidence 235678888 999999999999999999999887532 11121110112456
Q ss_pred HHHHHHHhcccCCCCCHHHHHHHHHHHHHHHHH
Q 035603 371 PADVAENLMPKSDEDDAGTCLKNLIEALKAAKE 403 (431)
Q Consensus 371 ~adI~~~l~~~~~~~~~~~~l~~l~~~l~~~~~ 403 (431)
++-+. .+.. ...++....+.+.+.+++...
T Consensus 797 ~~al~-~L~~--~gy~~~~GARpL~r~I~~~i~ 826 (857)
T PRK10865 797 DEALK-LLSE--NGYDPVYGARPLKRAIQQQIE 826 (857)
T ss_pred HHHHH-HHHH--cCCCccCChHHHHHHHHHHHH
Confidence 65554 4443 233444444444444444433
No 127
>TIGR00678 holB DNA polymerase III, delta' subunit. At position 126-127 of the seed alignment, this family lacks the HM motif of gamma/tau; at 132 it has a near-invariant A vs. an invariant F in gamma/tau.
Probab=99.07 E-value=3e-09 Score=97.83 Aligned_cols=116 Identities=22% Similarity=0.303 Sum_probs=82.1
Q ss_pred CCceeEEeCCCCCcHHHHHHHHHHHcCCC------------------------eEEecccCc-CChHHHHHHHHHhhhc-
Q 035603 226 WKRGYLLFGPPGTGKSTMIAAMANCLNYD------------------------VYDLELTSV-ENNNELRSLLVDISSK- 279 (431)
Q Consensus 226 ~~rg~LL~GPPGtGKTsla~aiA~~l~~~------------------------i~~l~~~~~-~~~~~l~~l~~~~~~~- 279 (431)
.+..||||||||+|||++++++|+.+... +..++...- -..+.++.+.......
T Consensus 13 ~~~~~L~~G~~G~gkt~~a~~~~~~l~~~~~~~~~~c~~~~~c~~~~~~~~~d~~~~~~~~~~~~~~~i~~i~~~~~~~~ 92 (188)
T TIGR00678 13 LAHAYLFAGPEGVGKELLALALAKALLCEQPGGGEPCGECPSCRLIEAGNHPDLHRLEPEGQSIKVDQVRELVEFLSRTP 92 (188)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCCCcEEEeccccCcCCHHHHHHHHHHHccCc
Confidence 45689999999999999999999987542 333332211 1235666655444332
Q ss_pred -------------ccchhhHHHHHHHHhcCcccCCCCceEEEEecCCCCCCChhhhccCceeEEEEcCCCCHHHHHHHHH
Q 035603 280 -------------KKKSNVTLSGLLNCIGGLWSTCGGERIIVFTTNHVDKLDPALIRRGRMDKHIEMPYCCFEAFKVLAK 346 (431)
Q Consensus 280 -------------~~~~~~~~s~lL~~ldg~~~~~~~~~ivI~TTN~~~~Ld~AllRpGRfd~~I~~~~p~~~~r~~i~~ 346 (431)
+.-.....+.||..|+.. +...++|++||.+..|++++.+ |. ..+++++|+.++...++.
T Consensus 93 ~~~~~kviiide~~~l~~~~~~~Ll~~le~~----~~~~~~il~~~~~~~l~~~i~s--r~-~~~~~~~~~~~~~~~~l~ 165 (188)
T TIGR00678 93 QESGRRVVIIEDAERMNEAAANALLKTLEEP----PPNTLFILITPSPEKLLPTIRS--RC-QVLPFPPLSEEALLQWLI 165 (188)
T ss_pred ccCCeEEEEEechhhhCHHHHHHHHHHhcCC----CCCeEEEEEECChHhChHHHHh--hc-EEeeCCCCCHHHHHHHHH
Confidence 222344577789888753 3447788888888999999998 55 489999999999887776
Q ss_pred Hh
Q 035603 347 NY 348 (431)
Q Consensus 347 ~~ 348 (431)
..
T Consensus 166 ~~ 167 (188)
T TIGR00678 166 RQ 167 (188)
T ss_pred Hc
Confidence 65
No 128
>KOG1969 consensus DNA replication checkpoint protein CHL12/CTF18 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=99.06 E-value=6.4e-09 Score=109.89 Aligned_cols=156 Identities=21% Similarity=0.265 Sum_probs=109.2
Q ss_pred CcceeeeccCCCCccccccChhhHHHHHHHHHHHHh---C--------------HHHH----HHhCCCCCceeEEeCCCC
Q 035603 179 KKWSHVYFEHPATFDTLAMASKKKEAIKKDLIKFTE---G--------------KEYY----AKIGKAWKRGYLLFGPPG 237 (431)
Q Consensus 179 ~~w~~~~~~~p~~f~~l~g~~~~k~~i~~~l~~~~~---~--------------~~~~----~~~g~~~~rg~LL~GPPG 237 (431)
..|. .--.|..|.+|.+++.+-..++.+++.|=- + ++.+ ...+.|..+-+||+||||
T Consensus 259 kLWV--dky~Pk~FtdLLsDe~tNR~~L~WLK~WD~~VFg~~vsrl~~s~~~~~ke~~~~~~~~s~RP~kKilLL~GppG 336 (877)
T KOG1969|consen 259 KLWV--DKYRPKKFTDLLSDEKTNRRMLGWLKQWDPCVFGQKVSRLLASKGPTEKEVLDMELDPSKRPPKKILLLCGPPG 336 (877)
T ss_pred ceee--cccChhHHHHHhcchhHHHHHHHHHHhhcHHhhcchHhhhccccccchhhhhhcccCccCCCccceEEeecCCC
Confidence 4785 667899999999999999999988876521 0 0111 112456678899999999
Q ss_pred CcHHHHHHHHHHHcCCCeEEecccCcCChHHHHHHHHHhhhc------------------ccchhhHHHHHHHHhc--Cc
Q 035603 238 TGKSTMIAAMANCLNYDVYDLELTSVENNNELRSLLVDISSK------------------KKKSNVTLSGLLNCIG--GL 297 (431)
Q Consensus 238 tGKTsla~aiA~~l~~~i~~l~~~~~~~~~~l~~l~~~~~~~------------------~~~~~~~~s~lL~~ld--g~ 297 (431)
-||||||+.||+..||.++++|.++-.+...+.+.+..+... ++.....+..+|..+. +.
T Consensus 337 lGKTTLAHViAkqaGYsVvEINASDeRt~~~v~~kI~~avq~~s~l~adsrP~CLViDEIDGa~~~~Vdvilslv~a~~k 416 (877)
T KOG1969|consen 337 LGKTTLAHVIAKQAGYSVVEINASDERTAPMVKEKIENAVQNHSVLDADSRPVCLVIDEIDGAPRAAVDVILSLVKATNK 416 (877)
T ss_pred CChhHHHHHHHHhcCceEEEecccccccHHHHHHHHHHHHhhccccccCCCcceEEEecccCCcHHHHHHHHHHHHhhcc
Confidence 999999999999999999999999988877777665554433 3333444555555543 11
Q ss_pred ccCCC---------------CceEEEEecCCCCCCChhhh--ccCceeEEEEcCCCCHHH
Q 035603 298 WSTCG---------------GERIIVFTTNHVDKLDPALI--RRGRMDKHIEMPYCCFEA 340 (431)
Q Consensus 298 ~~~~~---------------~~~ivI~TTN~~~~Ld~All--RpGRfd~~I~~~~p~~~~ 340 (431)
..... --+-||+.+|. ..-|||. | -+-..|.|..|...-
T Consensus 417 ~~~Gkq~~~~~~rkkkr~~~L~RPIICICNd--LYaPaLR~Lr--~~A~ii~f~~p~~s~ 472 (877)
T KOG1969|consen 417 QATGKQAKKDKKRKKKRSKLLTRPIICICND--LYAPALRPLR--PFAEIIAFVPPSQSR 472 (877)
T ss_pred hhhcCcccchhhhhhhccccccCCEEEEecC--ccchhhhhcc--cceEEEEecCCChhH
Confidence 11000 02468999996 4567874 5 477788888887654
No 129
>PRK00149 dnaA chromosomal replication initiation protein; Reviewed
Probab=99.05 E-value=2.1e-09 Score=112.14 Aligned_cols=183 Identities=17% Similarity=0.247 Sum_probs=104.2
Q ss_pred eccCCCCccccccChhhHHHHHHHHHHHHhCHHHHHHhCCCCCceeEEeCCCCCcHHHHHHHHHHHc-----CCCeEEec
Q 035603 185 YFEHPATFDTLAMASKKKEAIKKDLIKFTEGKEYYAKIGKAWKRGYLLFGPPGTGKSTMIAAMANCL-----NYDVYDLE 259 (431)
Q Consensus 185 ~~~~p~~f~~l~g~~~~k~~i~~~l~~~~~~~~~~~~~g~~~~rg~LL~GPPGtGKTsla~aiA~~l-----~~~i~~l~ 259 (431)
.+.+..+|++.+..+.-+. ....+..+...+ |.. .++++||||||||||+|++|+|+++ +..++.++
T Consensus 114 ~l~~~~tfd~fv~g~~n~~-a~~~~~~~~~~~------~~~-~~~l~l~G~~G~GKThL~~ai~~~~~~~~~~~~v~yi~ 185 (450)
T PRK00149 114 PLNPKYTFDNFVVGKSNRL-AHAAALAVAENP------GKA-YNPLFIYGGVGLGKTHLLHAIGNYILEKNPNAKVVYVT 185 (450)
T ss_pred CCCCCCcccccccCCCcHH-HHHHHHHHHhCc------Ccc-CCeEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEEE
Confidence 4556678999543333222 233343333322 222 2579999999999999999999987 55677776
Q ss_pred ccCcCCh--HH-----HHHHHHHhhhc-----cc-----chhhHHHHHHHHhcCcccCCCCceEEEEecCCCCC---CCh
Q 035603 260 LTSVENN--NE-----LRSLLVDISSK-----KK-----KSNVTLSGLLNCIGGLWSTCGGERIIVFTTNHVDK---LDP 319 (431)
Q Consensus 260 ~~~~~~~--~~-----l~~l~~~~~~~-----~~-----~~~~~~s~lL~~ldg~~~~~~~~~ivI~TTN~~~~---Ld~ 319 (431)
+.++... .. ...+....... +. ....+...|+..++.+... +..+||.++..|.. +++
T Consensus 186 ~~~~~~~~~~~~~~~~~~~~~~~~~~~dlLiiDDi~~l~~~~~~~~~l~~~~n~l~~~--~~~iiits~~~p~~l~~l~~ 263 (450)
T PRK00149 186 SEKFTNDFVNALRNNTMEEFKEKYRSVDVLLIDDIQFLAGKERTQEEFFHTFNALHEA--GKQIVLTSDRPPKELPGLEE 263 (450)
T ss_pred HHHHHHHHHHHHHcCcHHHHHHHHhcCCEEEEehhhhhcCCHHHHHHHHHHHHHHHHC--CCcEEEECCCCHHHHHHHHH
Confidence 6553110 00 11111110011 11 1122345566666655432 22455555555544 778
Q ss_pred hhhccCcee--EEEEcCCCCHHHHHHHHHHhhchhcchhHH-HHHhHhccCCCCHHHHHHHhc
Q 035603 320 ALIRRGRMD--KHIEMPYCCFEAFKVLAKNYLEIESHELFH-EIGSLLGETDITPADVAENLM 379 (431)
Q Consensus 320 AllRpGRfd--~~I~~~~p~~~~r~~i~~~~l~~~~~~~~~-~i~~l~~~~~~s~adI~~~l~ 379 (431)
.|.. ||. ..+++..|+.+.|..|++.........+.+ .+.-++...+=+..++.+.+.
T Consensus 264 ~l~S--Rl~~gl~v~i~~pd~~~r~~il~~~~~~~~~~l~~e~l~~ia~~~~~~~R~l~~~l~ 324 (450)
T PRK00149 264 RLRS--RFEWGLTVDIEPPDLETRIAILKKKAEEEGIDLPDEVLEFIAKNITSNVRELEGALN 324 (450)
T ss_pred HHHh--HhcCCeeEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHcCcCCCHHHHHHHHH
Confidence 9888 885 689999999999999999987643323322 344445444445555554443
No 130
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=99.05 E-value=6.3e-10 Score=121.93 Aligned_cols=137 Identities=23% Similarity=0.312 Sum_probs=90.7
Q ss_pred ccccccChhhHHHHHHHHHHHHhCHHHHHHhCCCCCceeEEeCCCCCcHHHHHHHHHHHc----------CCCeEEeccc
Q 035603 192 FDTLAMASKKKEAIKKDLIKFTEGKEYYAKIGKAWKRGYLLFGPPGTGKSTMIAAMANCL----------NYDVYDLELT 261 (431)
Q Consensus 192 f~~l~g~~~~k~~i~~~l~~~~~~~~~~~~~g~~~~rg~LL~GPPGtGKTsla~aiA~~l----------~~~i~~l~~~ 261 (431)
++.++|-++..+.+.+.+.. ..+..+||+||||||||++++++|... +..++.+++.
T Consensus 185 ~~~liGR~~ei~~~i~iL~r-------------~~~~n~LLvGppGvGKT~lae~la~~i~~~~vP~~l~~~~~~~l~~~ 251 (758)
T PRK11034 185 IDPLIGREKELERAIQVLCR-------------RRKNNPLLVGESGVGKTAIAEGLAWRIVQGDVPEVMADCTIYSLDIG 251 (758)
T ss_pred CCcCcCCCHHHHHHHHHHhc-------------cCCCCeEEECCCCCCHHHHHHHHHHHHHhcCCCchhcCCeEEeccHH
Confidence 56677776666665543321 124578999999999999999999864 5667777655
Q ss_pred CcC--------ChHHHHHHHHHhhhc----------------cc--chhhHHHHHHHHhcCcccCCCCceEEEEecCCCC
Q 035603 262 SVE--------NNNELRSLLVDISSK----------------KK--KSNVTLSGLLNCIGGLWSTCGGERIIVFTTNHVD 315 (431)
Q Consensus 262 ~~~--------~~~~l~~l~~~~~~~----------------~~--~~~~~~s~lL~~ldg~~~~~~~~~ivI~TTN~~~ 315 (431)
.+. ....++.++...... .. ...... .|.+..+-. .+++.+|++||.++
T Consensus 252 ~llaG~~~~Ge~e~rl~~l~~~l~~~~~~ILfIDEIh~L~g~g~~~~g~~d~---~nlLkp~L~--~g~i~vIgATt~~E 326 (758)
T PRK11034 252 SLLAGTKYRGDFEKRFKALLKQLEQDTNSILFIDEIHTIIGAGAASGGQVDA---ANLIKPLLS--SGKIRVIGSTTYQE 326 (758)
T ss_pred HHhcccchhhhHHHHHHHHHHHHHhcCCCEEEeccHHHHhccCCCCCcHHHH---HHHHHHHHh--CCCeEEEecCChHH
Confidence 432 123456665544321 11 111222 233332222 34589999999765
Q ss_pred -----CCChhhhccCceeEEEEcCCCCHHHHHHHHHHhh
Q 035603 316 -----KLDPALIRRGRMDKHIEMPYCCFEAFKVLAKNYL 349 (431)
Q Consensus 316 -----~Ld~AllRpGRfd~~I~~~~p~~~~r~~i~~~~l 349 (431)
.+||||.| ||+ .|+++.|+.+++..|++.+.
T Consensus 327 ~~~~~~~D~AL~r--RFq-~I~v~ePs~~~~~~IL~~~~ 362 (758)
T PRK11034 327 FSNIFEKDRALAR--RFQ-KIDITEPSIEETVQIINGLK 362 (758)
T ss_pred HHHHhhccHHHHh--hCc-EEEeCCCCHHHHHHHHHHHH
Confidence 58999999 996 79999999999999988654
No 131
>KOG2028 consensus ATPase related to the helicase subunit of the Holliday junction resolvase [Replication, recombination and repair]
Probab=99.05 E-value=2.1e-09 Score=105.54 Aligned_cols=145 Identities=21% Similarity=0.264 Sum_probs=90.1
Q ss_pred cCCCCccccccChhhHHHHHHHHHHHHhCHHHHHHhCCCCCceeEEeCCCCCcHHHHHHHHHHHcCCC---eEEecccCc
Q 035603 187 EHPATFDTLAMASKKKEAIKKDLIKFTEGKEYYAKIGKAWKRGYLLFGPPGTGKSTMIAAMANCLNYD---VYDLELTSV 263 (431)
Q Consensus 187 ~~p~~f~~l~g~~~~k~~i~~~l~~~~~~~~~~~~~g~~~~rg~LL~GPPGtGKTsla~aiA~~l~~~---i~~l~~~~~ 263 (431)
-.|.++++.+|++.+..+ ...+...+.. + --.+++|+||||||||+||+.||+...-+ |+.++.+.-
T Consensus 132 mRPktL~dyvGQ~hlv~q-~gllrs~ieq-------~--~ipSmIlWGppG~GKTtlArlia~tsk~~SyrfvelSAt~a 201 (554)
T KOG2028|consen 132 MRPKTLDDYVGQSHLVGQ-DGLLRSLIEQ-------N--RIPSMILWGPPGTGKTTLARLIASTSKKHSYRFVELSATNA 201 (554)
T ss_pred cCcchHHHhcchhhhcCc-chHHHHHHHc-------C--CCCceEEecCCCCchHHHHHHHHhhcCCCceEEEEEecccc
Confidence 368889999998877655 2333333321 1 11379999999999999999999987665 666666554
Q ss_pred CChHHHHHHHHHhhhc------------ccchhhHHHHHHHHhcCcccCCCCceEEEEec--CCCCCCChhhhccCceeE
Q 035603 264 ENNNELRSLLVDISSK------------KKKSNVTLSGLLNCIGGLWSTCGGERIIVFTT--NHVDKLDPALIRRGRMDK 329 (431)
Q Consensus 264 ~~~~~l~~l~~~~~~~------------~~~~~~~~s~lL~~ldg~~~~~~~~~ivI~TT--N~~~~Ld~AllRpGRfd~ 329 (431)
. ..+++.+|.++.+. ++..+-..++--.+|--+ .+ +.+++|++| |..-.|..||+.++|+
T Consensus 202 ~-t~dvR~ife~aq~~~~l~krkTilFiDEiHRFNksQQD~fLP~V--E~-G~I~lIGATTENPSFqln~aLlSRC~V-- 275 (554)
T KOG2028|consen 202 K-TNDVRDIFEQAQNEKSLTKRKTILFIDEIHRFNKSQQDTFLPHV--EN-GDITLIGATTENPSFQLNAALLSRCRV-- 275 (554)
T ss_pred c-hHHHHHHHHHHHHHHhhhcceeEEEeHHhhhhhhhhhhccccee--cc-CceEEEecccCCCccchhHHHHhccce--
Confidence 3 34699999887765 112222222222222222 12 236777654 4556899999996643
Q ss_pred EEEcCCCCHHHHHHHHHHh
Q 035603 330 HIEMPYCCFEAFKVLAKNY 348 (431)
Q Consensus 330 ~I~~~~p~~~~r~~i~~~~ 348 (431)
+-+...+.+....|+.+-
T Consensus 276 -fvLekL~~n~v~~iL~ra 293 (554)
T KOG2028|consen 276 -FVLEKLPVNAVVTILMRA 293 (554)
T ss_pred -eEeccCCHHHHHHHHHHH
Confidence 444555566666666553
No 132
>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=99.04 E-value=2.6e-10 Score=99.45 Aligned_cols=97 Identities=28% Similarity=0.367 Sum_probs=66.2
Q ss_pred eeEEeCCCCCcHHHHHHHHHHHcCCCeEEecccCcCChHHHHHHHHHhhhc-----------------------ccchhh
Q 035603 229 GYLLFGPPGTGKSTMIAAMANCLNYDVYDLELTSVENNNELRSLLVDISSK-----------------------KKKSNV 285 (431)
Q Consensus 229 g~LL~GPPGtGKTsla~aiA~~l~~~i~~l~~~~~~~~~~l~~l~~~~~~~-----------------------~~~~~~ 285 (431)
++||+||||||||++++.+|..++.+++.+.++...+..++.......... +.....
T Consensus 1 ~vlL~G~~G~GKt~l~~~la~~~~~~~~~i~~~~~~~~~dl~g~~~~~~~~~~~~~~~l~~a~~~~~il~lDEin~a~~~ 80 (139)
T PF07728_consen 1 PVLLVGPPGTGKTTLARELAALLGRPVIRINCSSDTTEEDLIGSYDPSNGQFEFKDGPLVRAMRKGGILVLDEINRAPPE 80 (139)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHHTCEEEEEE-TTTSTHHHHHCEEET-TTTTCEEE-CCCTTHHEEEEEEESSCGG--HH
T ss_pred CEEEECCCCCCHHHHHHHHHHHhhcceEEEEeccccccccceeeeeecccccccccccccccccceeEEEECCcccCCHH
Confidence 489999999999999999999999999999988865555443221110110 223456
Q ss_pred HHHHHHHHhcCcccC----------CCC-----ceEEEEecCCCC----CCChhhhccCce
Q 035603 286 TLSGLLNCIGGLWST----------CGG-----ERIIVFTTNHVD----KLDPALIRRGRM 327 (431)
Q Consensus 286 ~~s~lL~~ldg~~~~----------~~~-----~~ivI~TTN~~~----~Ld~AllRpGRf 327 (431)
.+..|++.++.-.-. ... +..||+|+|..+ .+++||+| ||
T Consensus 81 v~~~L~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~t~N~~~~~~~~l~~al~~--Rf 139 (139)
T PF07728_consen 81 VLESLLSLLEERRIQLPEGGEEIKEPNNDLASPNFRIIATMNPRDKGRKELSPALLD--RF 139 (139)
T ss_dssp HHHTTHHHHSSSEEEE-TSSSEEE--TT------EEEEEEESSST--TTTTCHHHHT--T-
T ss_pred HHHHHHHHHhhCcccccCCCcEEecCcccccccceEEEEEEcCCCCCcCcCCHHHHh--hC
Confidence 677777777652111 111 379999999998 99999999 86
No 133
>TIGR02903 spore_lon_C ATP-dependent protease, Lon family. Members of this protein family resemble the widely distributed ATP-dependent protease La, also called Lon and LonA. It resembles even more closely LonB, which is a LonA paralog found in genomes if and only if the species is capable of endospore formation (as in Bacillus subtilis, Clostridium tetani, and select other members of the Firmicutes) and expressed specifically in the forespore compartment. Members of this family are restricted to a subset of spore-forming species, and are very likely to participate in the program of endospore formation. We propose the designation LonC.
Probab=99.03 E-value=5.1e-09 Score=113.00 Aligned_cols=147 Identities=18% Similarity=0.278 Sum_probs=94.3
Q ss_pred CCCCccccccChhhHHHHHHHHHHHHhCHHHHHHhCCCCCceeEEeCCCCCcHHHHHHHHHHHc----------CCCeEE
Q 035603 188 HPATFDTLAMASKKKEAIKKDLIKFTEGKEYYAKIGKAWKRGYLLFGPPGTGKSTMIAAMANCL----------NYDVYD 257 (431)
Q Consensus 188 ~p~~f~~l~g~~~~k~~i~~~l~~~~~~~~~~~~~g~~~~rg~LL~GPPGtGKTsla~aiA~~l----------~~~i~~ 257 (431)
.|.+|++++|.+...+.+.+.+. .+.+..++|+||||||||++|+++++.. +.+++.
T Consensus 149 rp~~~~~iiGqs~~~~~l~~~ia-------------~~~~~~vlL~Gp~GtGKTTLAr~i~~~~~~~~~~~~~~~~~fv~ 215 (615)
T TIGR02903 149 RPRAFSEIVGQERAIKALLAKVA-------------SPFPQHIILYGPPGVGKTTAARLALEEAKKLKHTPFAEDAPFVE 215 (615)
T ss_pred CcCcHHhceeCcHHHHHHHHHHh-------------cCCCCeEEEECCCCCCHHHHHHHHHHhhhhccCCcccCCCCeEE
Confidence 48899999999988887654331 1335679999999999999999998765 346788
Q ss_pred ecccCcCC-hHHHH-HHH---------------HH-------------hhhc-------ccchhhHHHHHHHHhcCcc--
Q 035603 258 LELTSVEN-NNELR-SLL---------------VD-------------ISSK-------KKKSNVTLSGLLNCIGGLW-- 298 (431)
Q Consensus 258 l~~~~~~~-~~~l~-~l~---------------~~-------------~~~~-------~~~~~~~~s~lL~~ldg~~-- 298 (431)
+++..+.. ...+. .++ .. +... +.-+......|+..++.-.
T Consensus 216 i~~~~l~~d~~~i~~~llg~~~~~~~~~a~~~l~~~gl~~~~~g~v~~asgGvL~LDEi~~Ld~~~Q~~Ll~~Le~~~v~ 295 (615)
T TIGR02903 216 VDGTTLRWDPREVTNPLLGSVHDPIYQGARRDLAETGVPEPKTGLVTDAHGGVLFIDEIGELDPLLQNKLLKVLEDKRVE 295 (615)
T ss_pred EechhccCCHHHHhHHhcCCccHHHHHHHHHHHHHcCCCchhcCchhhcCCCeEEEeccccCCHHHHHHHHHHHhhCeEE
Confidence 88765521 11111 011 00 0000 1122334555666664210
Q ss_pred ----------------------cCCCCceEEEE-ecCCCCCCChhhhccCceeEEEEcCCCCHHHHHHHHHHhhc
Q 035603 299 ----------------------STCGGERIIVF-TTNHVDKLDPALIRRGRMDKHIEMPYCCFEAFKVLAKNYLE 350 (431)
Q Consensus 299 ----------------------~~~~~~~ivI~-TTN~~~~Ld~AllRpGRfd~~I~~~~p~~~~r~~i~~~~l~ 350 (431)
......+++|+ ||+.++.++++|.+ |+. .+++++.+.++...|++.++.
T Consensus 296 ~~~~~~~~~~~~~~~~ik~~~~~~~~~~~VLI~aTt~~~~~l~~aLrS--R~~-~i~~~pls~edi~~Il~~~a~ 367 (615)
T TIGR02903 296 FSSSYYDPDDPNVPKYIKKLFEEGAPADFVLIGATTRDPEEINPALRS--RCA-EVFFEPLTPEDIALIVLNAAE 367 (615)
T ss_pred eecceeccCCcccchhhhhhcccCccceEEEEEeccccccccCHHHHh--cee-EEEeCCCCHHHHHHHHHHHHH
Confidence 00112245554 66778899999988 886 578888999999999998764
No 134
>CHL00081 chlI Mg-protoporyphyrin IX chelatase
Probab=99.00 E-value=1.1e-08 Score=102.63 Aligned_cols=145 Identities=19% Similarity=0.206 Sum_probs=95.2
Q ss_pred CCCccccccChhhHHHHHHHHHHHHhCHHHHHHhCCCCCceeEEeCCCCCcHHHHHHHHHHHcCC-------CeEEeccc
Q 035603 189 PATFDTLAMASKKKEAIKKDLIKFTEGKEYYAKIGKAWKRGYLLFGPPGTGKSTMIAAMANCLNY-------DVYDLELT 261 (431)
Q Consensus 189 p~~f~~l~g~~~~k~~i~~~l~~~~~~~~~~~~~g~~~~rg~LL~GPPGtGKTsla~aiA~~l~~-------~i~~l~~~ 261 (431)
.-+|.+|+|++++|..|...+.. |...|+||.||+|||||+++++++..+.. +|. .+..
T Consensus 13 ~~pf~~ivGq~~~k~al~~~~~~-------------p~~~~vli~G~~GtGKs~~ar~~~~~l~~~~~~~~~pf~-~~p~ 78 (350)
T CHL00081 13 VFPFTAIVGQEEMKLALILNVID-------------PKIGGVMIMGDRGTGKSTTIRALVDLLPEIEVVKDDPFN-SHPS 78 (350)
T ss_pred CCCHHHHhChHHHHHHHHHhccC-------------CCCCeEEEEcCCCCCHHHHHHHHHHHHhhcCccCCCCCC-CCCC
Confidence 45899999999999988765432 22358999999999999999999887642 111 0000
Q ss_pred -----------------------------Cc---CChHH------HHHHHHHhhh------------c-------ccchh
Q 035603 262 -----------------------------SV---ENNNE------LRSLLVDISS------------K-------KKKSN 284 (431)
Q Consensus 262 -----------------------------~~---~~~~~------l~~l~~~~~~------------~-------~~~~~ 284 (431)
.+ .+.+. +.+.+..... . +.-+.
T Consensus 79 ~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~~ted~l~G~iD~~~al~~g~~~~~~GlL~~A~~GiL~lDEInrL~~ 158 (350)
T CHL00081 79 DPELMSDEVREAIQNGETIETEKIKIPMVDLPLGATEDRVCGTIDIEKALTEGVKAFEPGLLAKANRGILYVDEVNLLDD 158 (350)
T ss_pred ChhhhchhhhhhhcccccccceeccccceecCCCCchhhccCcccHHHHhhcCcccccCCeeeecCCCEEEecChHhCCH
Confidence 00 01111 1222211110 0 23345
Q ss_pred hHHHHHHHHhcC---------cccCCCCceEEEEecCCCC-CCChhhhccCceeEEEEcCCCC-HHHHHHHHHHhh
Q 035603 285 VTLSGLLNCIGG---------LWSTCGGERIIVFTTNHVD-KLDPALIRRGRMDKHIEMPYCC-FEAFKVLAKNYL 349 (431)
Q Consensus 285 ~~~s~lL~~ldg---------~~~~~~~~~ivI~TTN~~~-~Ld~AllRpGRfd~~I~~~~p~-~~~r~~i~~~~l 349 (431)
.+.+.||+.|+. ........+++|+|.|..+ .++++|+. ||.++|.+++|+ .+.+.+|++...
T Consensus 159 ~~Q~~LLeam~e~~~~ier~G~s~~~p~rfiviaT~np~eg~l~~~Lld--Rf~l~i~l~~~~~~~~e~~il~~~~ 232 (350)
T CHL00081 159 HLVDILLDSAASGWNTVEREGISIRHPARFVLVGSGNPEEGELRPQLLD--RFGMHAEIRTVKDPELRVKIVEQRT 232 (350)
T ss_pred HHHHHHHHHHHhCCeEEeeCCeeeecCCCEEEEeccCcccCCCCHHHHH--HhCceeecCCCCChHHHHHHHHhhh
Confidence 667778888743 2212233567788888665 69999999 999999999998 589989988754
No 135
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=99.00 E-value=2.9e-09 Score=115.12 Aligned_cols=198 Identities=17% Similarity=0.212 Sum_probs=133.8
Q ss_pred cccccChhhHHHHHHHHHHHHhCHHHHHHhCCCC---C-ceeEEeCCCCCcHHHHHHHHHHHcC---CCeEEecccCcCC
Q 035603 193 DTLAMASKKKEAIKKDLIKFTEGKEYYAKIGKAW---K-RGYLLFGPPGTGKSTMIAAMANCLN---YDVYDLELTSVEN 265 (431)
Q Consensus 193 ~~l~g~~~~k~~i~~~l~~~~~~~~~~~~~g~~~---~-rg~LL~GPPGtGKTsla~aiA~~l~---~~i~~l~~~~~~~ 265 (431)
..|+|+++..+.|.+.+..-.. |+.- | ..+||.||.|+|||-||+++|..|. -.++.+|+|+...
T Consensus 491 ~rViGQd~AV~avs~aIrraRa--------GL~dp~rPigsFlF~GPTGVGKTELAkaLA~~Lfg~e~aliR~DMSEy~E 562 (786)
T COG0542 491 KRVIGQDEAVEAVSDAIRRARA--------GLGDPNRPIGSFLFLGPTGVGKTELAKALAEALFGDEQALIRIDMSEYME 562 (786)
T ss_pred cceeChHHHHHHHHHHHHHHhc--------CCCCCCCCceEEEeeCCCcccHHHHHHHHHHHhcCCCccceeechHHHHH
Confidence 4578999888888877765443 3222 1 3678899999999999999999997 7899999999987
Q ss_pred hHHHHHHHHHhhhc--------------------------ccchhhHHHHHHHHhcCcccCCCC-------ceEEEEecC
Q 035603 266 NNELRSLLVDISSK--------------------------KKKSNVTLSGLLNCIGGLWSTCGG-------ERIIVFTTN 312 (431)
Q Consensus 266 ~~~l~~l~~~~~~~--------------------------~~~~~~~~s~lL~~ldg~~~~~~~-------~~ivI~TTN 312 (431)
...+.+++...++. ...+...++-||+.||.-.-..+. +.|||||||
T Consensus 563 kHsVSrLIGaPPGYVGyeeGG~LTEaVRr~PySViLlDEIEKAHpdV~nilLQVlDdGrLTD~~Gr~VdFrNtiIImTSN 642 (786)
T COG0542 563 KHSVSRLIGAPPGYVGYEEGGQLTEAVRRKPYSVILLDEIEKAHPDVFNLLLQVLDDGRLTDGQGRTVDFRNTIIIMTSN 642 (786)
T ss_pred HHHHHHHhCCCCCCceeccccchhHhhhcCCCeEEEechhhhcCHHHHHHHHHHhcCCeeecCCCCEEecceeEEEEecc
Confidence 77788777654443 345677899999999853333332 469999999
Q ss_pred CC----------------------------CCCChhhhccCceeEEEEcCCCCHHHHHHHHHHhhchhcchhHHHHHhHh
Q 035603 313 HV----------------------------DKLDPALIRRGRMDKHIEMPYCCFEAFKVLAKNYLEIESHELFHEIGSLL 364 (431)
Q Consensus 313 ~~----------------------------~~Ld~AllRpGRfd~~I~~~~p~~~~r~~i~~~~l~~~~~~~~~~i~~l~ 364 (431)
-- ....|+++. |+|..|.|.+.+.+...+|+..++... ...+.+--
T Consensus 643 ~Gs~~i~~~~~~~~~~~~~~~~~~v~~~l~~~F~PEFLN--Rid~II~F~~L~~~~l~~Iv~~~L~~l----~~~L~~~~ 716 (786)
T COG0542 643 AGSEEILRDADGDDFADKEALKEAVMEELKKHFRPEFLN--RIDEIIPFNPLSKEVLERIVDLQLNRL----AKRLAERG 716 (786)
T ss_pred cchHHHHhhccccccchhhhHHHHHHHHHHhhCCHHHHh--hcccEEeccCCCHHHHHHHHHHHHHHH----HHHHHhCC
Confidence 32 013677887 999999999999999999999988532 22222100
Q ss_pred ccCCCCHHHHHHHhcccCCCCCHHHHHHHHHHHHHHHHHHHHh
Q 035603 365 GETDITPADVAENLMPKSDEDDAGTCLKNLIEALKAAKEKAKK 407 (431)
Q Consensus 365 ~~~~~s~adI~~~l~~~~~~~~~~~~l~~l~~~l~~~~~~~~~ 407 (431)
-...+|++-. +.+.. ...++....+.+.+++++..+..-.
T Consensus 717 i~l~~s~~a~-~~l~~--~gyd~~~GARpL~R~Iq~~i~~~La 756 (786)
T COG0542 717 ITLELSDEAK-DFLAE--KGYDPEYGARPLRRAIQQEIEDPLA 756 (786)
T ss_pred ceEEECHHHH-HHHHH--hccCCCcCchHHHHHHHHHHHHHHH
Confidence 0114555444 33333 2334555556666666655544333
No 136
>PRK08084 DNA replication initiation factor; Provisional
Probab=98.99 E-value=2.5e-09 Score=102.08 Aligned_cols=150 Identities=13% Similarity=0.098 Sum_probs=82.6
Q ss_pred ccCCCCccccccChhhHHHHHHHHHHHHhCHHHHHHhCCCCCceeEEeCCCCCcHHHHHHHHHHHcC---CCeEEecccC
Q 035603 186 FEHPATFDTLAMASKKKEAIKKDLIKFTEGKEYYAKIGKAWKRGYLLFGPPGTGKSTMIAAMANCLN---YDVYDLELTS 262 (431)
Q Consensus 186 ~~~p~~f~~l~g~~~~k~~i~~~l~~~~~~~~~~~~~g~~~~rg~LL~GPPGtGKTsla~aiA~~l~---~~i~~l~~~~ 262 (431)
..+..+|++.+-.. -......+..+... +..+.++||||||||||+|++++|+++. ..+..++...
T Consensus 15 ~~~~~~fd~f~~~~--n~~a~~~l~~~~~~---------~~~~~l~l~Gp~G~GKThLl~a~~~~~~~~~~~v~y~~~~~ 83 (235)
T PRK08084 15 LPDDETFASFYPGD--NDSLLAALQNALRQ---------EHSGYIYLWSREGAGRSHLLHAACAELSQRGRAVGYVPLDK 83 (235)
T ss_pred CCCcCCccccccCc--cHHHHHHHHHHHhC---------CCCCeEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEEHHH
Confidence 34447898876332 12233444433321 1235899999999999999999998764 3344444433
Q ss_pred cCC-hHHHHHHHHHh-------hhcccchhhHHHHHHHHhcCcccCCCCceEEEEecCCCCC---CChhhhccCcee--E
Q 035603 263 VEN-NNELRSLLVDI-------SSKKKKSNVTLSGLLNCIGGLWSTCGGERIIVFTTNHVDK---LDPALIRRGRMD--K 329 (431)
Q Consensus 263 ~~~-~~~l~~l~~~~-------~~~~~~~~~~~s~lL~~ldg~~~~~~~~~ivI~TTN~~~~---Ld~AllRpGRfd--~ 329 (431)
... ..++.+.+... ...-......-..|.+.++..... +...+|+.+++.|.. +.|.|.. |+. .
T Consensus 84 ~~~~~~~~~~~~~~~dlliiDdi~~~~~~~~~~~~lf~l~n~~~e~-g~~~li~ts~~~p~~l~~~~~~L~S--Rl~~g~ 160 (235)
T PRK08084 84 RAWFVPEVLEGMEQLSLVCIDNIECIAGDELWEMAIFDLYNRILES-GRTRLLITGDRPPRQLNLGLPDLAS--RLDWGQ 160 (235)
T ss_pred HhhhhHHHHHHhhhCCEEEEeChhhhcCCHHHHHHHHHHHHHHHHc-CCCeEEEeCCCChHHcCcccHHHHH--HHhCCc
Confidence 211 11222221111 000111122222344444433221 222455555556655 6799998 775 8
Q ss_pred EEEcCCCCHHHHHHHHHHhh
Q 035603 330 HIEMPYCCFEAFKVLAKNYL 349 (431)
Q Consensus 330 ~I~~~~p~~~~r~~i~~~~l 349 (431)
.+++..|+.+++.++++...
T Consensus 161 ~~~l~~~~~~~~~~~l~~~a 180 (235)
T PRK08084 161 IYKLQPLSDEEKLQALQLRA 180 (235)
T ss_pred eeeecCCCHHHHHHHHHHHH
Confidence 89999999999999886643
No 137
>PRK05707 DNA polymerase III subunit delta'; Validated
Probab=98.99 E-value=2.3e-08 Score=99.91 Aligned_cols=116 Identities=20% Similarity=0.323 Sum_probs=86.1
Q ss_pred CCceeEEeCCCCCcHHHHHHHHHHHcCC------------------------CeEEecccC---cCChHHHHHHHHHhhh
Q 035603 226 WKRGYLLFGPPGTGKSTMIAAMANCLNY------------------------DVYDLELTS---VENNNELRSLLVDISS 278 (431)
Q Consensus 226 ~~rg~LL~GPPGtGKTsla~aiA~~l~~------------------------~i~~l~~~~---~~~~~~l~~l~~~~~~ 278 (431)
.+.+|||+||+|+|||++|+++|+.+.+ +++.+.... .-..+.++++......
T Consensus 21 ~~ha~Lf~G~~G~GK~~~A~~~A~~llC~~~~~~~~Cg~C~sC~~~~~g~HPD~~~i~~~~~~~~i~id~iR~l~~~~~~ 100 (328)
T PRK05707 21 HPHAYLLHGPAGIGKRALAERLAAALLCEAPQGGGACGSCKGCQLLRAGSHPDNFVLEPEEADKTIKVDQVRELVSFVVQ 100 (328)
T ss_pred cceeeeeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHhcCCCCCEEEEeccCCCCCCCHHHHHHHHHHHhh
Confidence 3568999999999999999999998865 344443321 1134667776654433
Q ss_pred c--------------ccchhhHHHHHHHHhcCcccCCCCceEEEEecCCCCCCChhhhccCceeEEEEcCCCCHHHHHHH
Q 035603 279 K--------------KKKSNVTLSGLLNCIGGLWSTCGGERIIVFTTNHVDKLDPALIRRGRMDKHIEMPYCCFEAFKVL 344 (431)
Q Consensus 279 ~--------------~~~~~~~~s~lL~~ldg~~~~~~~~~ivI~TTN~~~~Ld~AllRpGRfd~~I~~~~p~~~~r~~i 344 (431)
. +.-.....+.||..|+. ++++.++|++|++++.|.|.++. |. ..+.|+.|+.++....
T Consensus 101 ~~~~~~~kv~iI~~a~~m~~~aaNaLLK~LEE----Pp~~~~fiL~t~~~~~ll~TI~S--Rc-~~~~~~~~~~~~~~~~ 173 (328)
T PRK05707 101 TAQLGGRKVVLIEPAEAMNRNAANALLKSLEE----PSGDTVLLLISHQPSRLLPTIKS--RC-QQQACPLPSNEESLQW 173 (328)
T ss_pred ccccCCCeEEEECChhhCCHHHHHHHHHHHhC----CCCCeEEEEEECChhhCcHHHHh--hc-eeeeCCCcCHHHHHHH
Confidence 2 33456678899999985 34568999999999999999998 55 4599999998887766
Q ss_pred HHHh
Q 035603 345 AKNY 348 (431)
Q Consensus 345 ~~~~ 348 (431)
+...
T Consensus 174 L~~~ 177 (328)
T PRK05707 174 LQQA 177 (328)
T ss_pred HHHh
Confidence 6654
No 138
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=98.99 E-value=6.1e-09 Score=89.49 Aligned_cols=108 Identities=28% Similarity=0.345 Sum_probs=72.7
Q ss_pred CCceeEEeCCCCCcHHHHHHHHHHHc---CCCeEEecccCcCChHHHHHHHH--------H-hhh-c------ccch---
Q 035603 226 WKRGYLLFGPPGTGKSTMIAAMANCL---NYDVYDLELTSVENNNELRSLLV--------D-ISS-K------KKKS--- 283 (431)
Q Consensus 226 ~~rg~LL~GPPGtGKTsla~aiA~~l---~~~i~~l~~~~~~~~~~l~~l~~--------~-~~~-~------~~~~--- 283 (431)
..++++++||||||||++++.+++.+ +.+++.+++.............. . ... . ++..
T Consensus 18 ~~~~v~i~G~~G~GKT~l~~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lilDe~~~~~ 97 (151)
T cd00009 18 PPKNLLLYGPPGTGKTTLARAIANELFRPGAPFLYLNASDLLEGLVVAELFGHFLVRLLFELAEKAKPGVLFIDEIDSLS 97 (151)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHhhcCCCCeEEEehhhhhhhhHHHHHhhhhhHhHHHHhhccCCCeEEEEeChhhhh
Confidence 35689999999999999999999998 88999988876643322221111 0 000 0 2222
Q ss_pred hhHHHHHHHHhcCcccC--CCCceEEEEecCCCC--CCChhhhccCceeEEEEcCC
Q 035603 284 NVTLSGLLNCIGGLWST--CGGERIIVFTTNHVD--KLDPALIRRGRMDKHIEMPY 335 (431)
Q Consensus 284 ~~~~s~lL~~ldg~~~~--~~~~~ivI~TTN~~~--~Ld~AllRpGRfd~~I~~~~ 335 (431)
......++..+...... ...+..+|++||... .+++.+.. |++.+|.+++
T Consensus 98 ~~~~~~~~~~i~~~~~~~~~~~~~~ii~~~~~~~~~~~~~~~~~--r~~~~i~~~~ 151 (151)
T cd00009 98 RGAQNALLRVLETLNDLRIDRENVRVIGATNRPLLGDLDRALYD--RLDIRIVIPL 151 (151)
T ss_pred HHHHHHHHHHHHhcCceeccCCCeEEEEecCccccCCcChhHHh--hhccEeecCC
Confidence 23455666666655321 124478889999887 78888888 9998888873
No 139
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=98.99 E-value=7.8e-09 Score=115.70 Aligned_cols=152 Identities=16% Similarity=0.259 Sum_probs=102.4
Q ss_pred cccccChhhHHHHHHHHHHHHhCHHHHHHhCCCCCceeEEeCCCCCcHHHHHHHHHHHc---CCCeEEecccCcCChHHH
Q 035603 193 DTLAMASKKKEAIKKDLIKFTEGKEYYAKIGKAWKRGYLLFGPPGTGKSTMIAAMANCL---NYDVYDLELTSVENNNEL 269 (431)
Q Consensus 193 ~~l~g~~~~k~~i~~~l~~~~~~~~~~~~~g~~~~rg~LL~GPPGtGKTsla~aiA~~l---~~~i~~l~~~~~~~~~~l 269 (431)
..|+|++...+.|.+.+......- .... .+...+||+||||||||++|++||..+ +.+++.++++.......+
T Consensus 565 ~~v~GQ~~av~~v~~~i~~~~~gl---~~~~-~p~~~~Lf~Gp~GvGKt~lA~~La~~l~~~~~~~i~~d~s~~~~~~~~ 640 (852)
T TIGR03346 565 ERVVGQDEAVEAVSDAIRRSRAGL---SDPN-RPIGSFLFLGPTGVGKTELAKALAEFLFDDEDAMVRIDMSEYMEKHSV 640 (852)
T ss_pred cccCCChHHHHHHHHHHHHHhccC---CCCC-CCCeEEEEEcCCCCCHHHHHHHHHHHhcCCCCcEEEEechhhcccchH
Confidence 558899988888888776543210 0000 112358999999999999999999987 457888888876433333
Q ss_pred HHHH---------------HHhhhc-----------ccchhhHHHHHHHHhcCcc--cCC-----CCceEEEEecCCCC-
Q 035603 270 RSLL---------------VDISSK-----------KKKSNVTLSGLLNCIGGLW--STC-----GGERIIVFTTNHVD- 315 (431)
Q Consensus 270 ~~l~---------------~~~~~~-----------~~~~~~~~s~lL~~ldg~~--~~~-----~~~~ivI~TTN~~~- 315 (431)
..++ ...... ...+....+.||+.+|.-. ... -.+.+||+|||...
T Consensus 641 ~~l~g~~~g~~g~~~~g~l~~~v~~~p~~vlllDeieka~~~v~~~Ll~~l~~g~l~d~~g~~vd~rn~iiI~TSn~g~~ 720 (852)
T TIGR03346 641 ARLIGAPPGYVGYEEGGQLTEAVRRKPYSVVLFDEVEKAHPDVFNVLLQVLDDGRLTDGQGRTVDFRNTVIIMTSNLGSQ 720 (852)
T ss_pred HHhcCCCCCccCcccccHHHHHHHcCCCcEEEEeccccCCHHHHHHHHHHHhcCceecCCCeEEecCCcEEEEeCCcchH
Confidence 3322 111111 3445667888888885321 111 13578999999721
Q ss_pred ------------------------CCChhhhccCceeEEEEcCCCCHHHHHHHHHHhhc
Q 035603 316 ------------------------KLDPALIRRGRMDKHIEMPYCCFEAFKVLAKNYLE 350 (431)
Q Consensus 316 ------------------------~Ld~AllRpGRfd~~I~~~~p~~~~r~~i~~~~l~ 350 (431)
.+.|.|+. |+|..|.|.+++.+....|+...+.
T Consensus 721 ~~~~~~~~~~~~~~~~~~~~~~~~~F~pel~~--Rid~IivF~PL~~e~l~~I~~l~L~ 777 (852)
T TIGR03346 721 FIQELAGGDDYEEMREAVMEVLRAHFRPEFLN--RIDEIVVFHPLGREQIARIVEIQLG 777 (852)
T ss_pred hHhhhcccccHHHHHHHHHHHHHhhcCHHHhc--CcCeEEecCCcCHHHHHHHHHHHHH
Confidence 14467776 9999999999999999999988774
No 140
>CHL00095 clpC Clp protease ATP binding subunit
Probab=98.98 E-value=6.9e-09 Score=115.74 Aligned_cols=152 Identities=17% Similarity=0.236 Sum_probs=100.3
Q ss_pred cccccChhhHHHHHHHHHHHHhCHHHHHHhCCCCCceeEEeCCCCCcHHHHHHHHHHHc---CCCeEEecccCcCChHHH
Q 035603 193 DTLAMASKKKEAIKKDLIKFTEGKEYYAKIGKAWKRGYLLFGPPGTGKSTMIAAMANCL---NYDVYDLELTSVENNNEL 269 (431)
Q Consensus 193 ~~l~g~~~~k~~i~~~l~~~~~~~~~~~~~g~~~~rg~LL~GPPGtGKTsla~aiA~~l---~~~i~~l~~~~~~~~~~l 269 (431)
+.|+|+++..+.|.+.+......- ...+.| ...+||+||||||||++|+++|..+ +.+++.++++.......+
T Consensus 509 ~~v~GQ~~ai~~l~~~i~~~~~gl---~~~~~p-~~~~lf~Gp~GvGKt~lA~~LA~~l~~~~~~~~~~d~s~~~~~~~~ 584 (821)
T CHL00095 509 KRIIGQDEAVVAVSKAIRRARVGL---KNPNRP-IASFLFSGPTGVGKTELTKALASYFFGSEDAMIRLDMSEYMEKHTV 584 (821)
T ss_pred CcCcChHHHHHHHHHHHHHHhhcc---cCCCCC-ceEEEEECCCCCcHHHHHHHHHHHhcCCccceEEEEchhccccccH
Confidence 557888888888877665332210 000111 1248999999999999999999987 357888888765332222
Q ss_pred HHHH-------------------HHhhhc-------ccchhhHHHHHHHHhcCccc-C------CCCceEEEEecCCCCC
Q 035603 270 RSLL-------------------VDISSK-------KKKSNVTLSGLLNCIGGLWS-T------CGGERIIVFTTNHVDK 316 (431)
Q Consensus 270 ~~l~-------------------~~~~~~-------~~~~~~~~s~lL~~ldg~~~-~------~~~~~ivI~TTN~~~~ 316 (431)
.+++ ...+.. +.......+.||..+|.-.- . .-.+.+||+|||....
T Consensus 585 ~~l~g~~~gyvg~~~~~~l~~~~~~~p~~VvllDeieka~~~v~~~Llq~le~g~~~d~~g~~v~~~~~i~I~Tsn~g~~ 664 (821)
T CHL00095 585 SKLIGSPPGYVGYNEGGQLTEAVRKKPYTVVLFDEIEKAHPDIFNLLLQILDDGRLTDSKGRTIDFKNTLIIMTSNLGSK 664 (821)
T ss_pred HHhcCCCCcccCcCccchHHHHHHhCCCeEEEECChhhCCHHHHHHHHHHhccCceecCCCcEEecCceEEEEeCCcchH
Confidence 2222 111111 34556678889999884211 1 1135799999995311
Q ss_pred -------------------------------------CChhhhccCceeEEEEcCCCCHHHHHHHHHHhhc
Q 035603 317 -------------------------------------LDPALIRRGRMDKHIEMPYCCFEAFKVLAKNYLE 350 (431)
Q Consensus 317 -------------------------------------Ld~AllRpGRfd~~I~~~~p~~~~r~~i~~~~l~ 350 (431)
+.|+|+. |+|..|.|.+.+.+....|+...+.
T Consensus 665 ~i~~~~~~~gf~~~~~~~~~~~~~~~~~~~~~~~~~~f~pefln--Rid~ii~F~pL~~~~l~~Iv~~~l~ 733 (821)
T CHL00095 665 VIETNSGGLGFELSENQLSEKQYKRLSNLVNEELKQFFRPEFLN--RLDEIIVFRQLTKNDVWEIAEIMLK 733 (821)
T ss_pred HHHhhccccCCcccccccccccHHHHHHHHHHHHHHhcCHHHhc--cCCeEEEeCCCCHHHHHHHHHHHHH
Confidence 2356766 9999999999999999999988875
No 141
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=98.98 E-value=5.2e-09 Score=116.63 Aligned_cols=149 Identities=19% Similarity=0.281 Sum_probs=100.8
Q ss_pred cccccChhhHHHHHHHHHHHHhCHHHHHHhCC-CCCce-eEEeCCCCCcHHHHHHHHHHHc---CCCeEEecccCcCChH
Q 035603 193 DTLAMASKKKEAIKKDLIKFTEGKEYYAKIGK-AWKRG-YLLFGPPGTGKSTMIAAMANCL---NYDVYDLELTSVENNN 267 (431)
Q Consensus 193 ~~l~g~~~~k~~i~~~l~~~~~~~~~~~~~g~-~~~rg-~LL~GPPGtGKTsla~aiA~~l---~~~i~~l~~~~~~~~~ 267 (431)
+.|+|+++..+.|.+.+.....+ +.- ..|.| +||+||||||||.+|+++|..+ ...++.++++.+....
T Consensus 566 ~~v~GQ~~Av~~v~~~i~~~~~g------l~~~~~p~~~~lf~Gp~GvGKT~lA~~La~~l~~~~~~~~~~dmse~~~~~ 639 (852)
T TIGR03345 566 ERVIGQDHALEAIAERIRTARAG------LEDPRKPLGVFLLVGPSGVGKTETALALAELLYGGEQNLITINMSEFQEAH 639 (852)
T ss_pred CeEcChHHHHHHHHHHHHHHhcC------CCCCCCCceEEEEECCCCCCHHHHHHHHHHHHhCCCcceEEEeHHHhhhhh
Confidence 46789999988888877654321 111 12444 7999999999999999999988 4567888887653333
Q ss_pred HHHHHH---------------HHhhhc-----------ccchhhHHHHHHHHhcCcccCCC-------CceEEEEecCCC
Q 035603 268 ELRSLL---------------VDISSK-----------KKKSNVTLSGLLNCIGGLWSTCG-------GERIIVFTTNHV 314 (431)
Q Consensus 268 ~l~~l~---------------~~~~~~-----------~~~~~~~~s~lL~~ldg~~~~~~-------~~~ivI~TTN~~ 314 (431)
.+..++ .....+ ...+....+.|++.+|.-.-..+ .+.+||+|||..
T Consensus 640 ~~~~l~g~~~gyvg~~~~g~L~~~v~~~p~svvllDEieka~~~v~~~Llq~ld~g~l~d~~Gr~vd~~n~iiI~TSNlg 719 (852)
T TIGR03345 640 TVSRLKGSPPGYVGYGEGGVLTEAVRRKPYSVVLLDEVEKAHPDVLELFYQVFDKGVMEDGEGREIDFKNTVILLTSNAG 719 (852)
T ss_pred hhccccCCCCCcccccccchHHHHHHhCCCcEEEEechhhcCHHHHHHHHHHhhcceeecCCCcEEeccccEEEEeCCCc
Confidence 222221 111111 34455667788888864321111 357999999941
Q ss_pred C-----------------------------CCChhhhccCceeEEEEcCCCCHHHHHHHHHHhhc
Q 035603 315 D-----------------------------KLDPALIRRGRMDKHIEMPYCCFEAFKVLAKNYLE 350 (431)
Q Consensus 315 ~-----------------------------~Ld~AllRpGRfd~~I~~~~p~~~~r~~i~~~~l~ 350 (431)
. .+.|+|+. |++ .|.|.+.+.+....|+...+.
T Consensus 720 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~PEfln--Ri~-iI~F~pLs~e~l~~Iv~~~L~ 781 (852)
T TIGR03345 720 SDLIMALCADPETAPDPEALLEALRPELLKVFKPAFLG--RMT-VIPYLPLDDDVLAAIVRLKLD 781 (852)
T ss_pred hHHHHHhccCcccCcchHHHHHHHHHHHHHhccHHHhc--cee-EEEeCCCCHHHHHHHHHHHHH
Confidence 1 15678877 998 788999999999999988875
No 142
>PRK07399 DNA polymerase III subunit delta'; Validated
Probab=98.97 E-value=2.2e-08 Score=99.63 Aligned_cols=139 Identities=17% Similarity=0.214 Sum_probs=96.8
Q ss_pred CccccccChhhHHHHHHHHHHHHhCHHHHHHhCCCCCceeEEeCCCCCcHHHHHHHHHHHcCCC----------------
Q 035603 191 TFDTLAMASKKKEAIKKDLIKFTEGKEYYAKIGKAWKRGYLLFGPPGTGKSTMIAAMANCLNYD---------------- 254 (431)
Q Consensus 191 ~f~~l~g~~~~k~~i~~~l~~~~~~~~~~~~~g~~~~rg~LL~GPPGtGKTsla~aiA~~l~~~---------------- 254 (431)
.|++|+|.+++++.+...+.. | ..+.+|||+||+|+||+++|.++|..+-+.
T Consensus 2 ~f~~iiGq~~~~~~L~~~i~~-----------~-rl~ha~Lf~G~~G~Gk~~~A~~~a~~llc~~~c~~c~~~~~~~~~h 69 (314)
T PRK07399 2 LFANLIGQPLAIELLTAAIKQ-----------N-RIAPAYLFAGPEGVGRKLAALCFIEGLLSQGSPSKNIRRRLEEGNH 69 (314)
T ss_pred cHHHhCCHHHHHHHHHHHHHh-----------C-CCCceEEEECCCCCCHHHHHHHHHHHHcCCCCCCCcHhcccccCCC
Confidence 488999999999988765531 1 234589999999999999999999986432
Q ss_pred --eEEecccCc-C----------------------ChHHHHHHHHHhhhc--------------ccchhhHHHHHHHHhc
Q 035603 255 --VYDLELTSV-E----------------------NNNELRSLLVDISSK--------------KKKSNVTLSGLLNCIG 295 (431)
Q Consensus 255 --i~~l~~~~~-~----------------------~~~~l~~l~~~~~~~--------------~~~~~~~~s~lL~~ld 295 (431)
++.+..... . .-+.++++......+ +.-.....+.||..|+
T Consensus 70 PDl~~i~p~~~~~g~~~~~~~~~~~~~~~~~~~~I~id~ir~i~~~l~~~p~~~~~kVvII~~ae~m~~~aaNaLLK~LE 149 (314)
T PRK07399 70 PDLLWVEPTYQHQGKLITASEAEEAGLKRKAPPQIRLEQIREIKRFLSRPPLEAPRKVVVIEDAETMNEAAANALLKTLE 149 (314)
T ss_pred CCEEEEeccccccccccchhhhhhccccccccccCcHHHHHHHHHHHccCcccCCceEEEEEchhhcCHHHHHHHHHHHh
Confidence 222222100 0 013455554333222 2334456778999998
Q ss_pred CcccCCCCceEEEEecCCCCCCChhhhccCceeEEEEcCCCCHHHHHHHHHHhh
Q 035603 296 GLWSTCGGERIIVFTTNHVDKLDPALIRRGRMDKHIEMPYCCFEAFKVLAKNYL 349 (431)
Q Consensus 296 g~~~~~~~~~ivI~TTN~~~~Ld~AllRpGRfd~~I~~~~p~~~~r~~i~~~~l 349 (431)
.. + ..++|++|+.++.|-|.++. |. ..|+|+.++.++..+++....
T Consensus 150 EP----p-~~~fILi~~~~~~Ll~TI~S--Rc-q~i~f~~l~~~~~~~~L~~~~ 195 (314)
T PRK07399 150 EP----G-NGTLILIAPSPESLLPTIVS--RC-QIIPFYRLSDEQLEQVLKRLG 195 (314)
T ss_pred CC----C-CCeEEEEECChHhCcHHHHh--hc-eEEecCCCCHHHHHHHHHHhh
Confidence 54 3 35788888999999999998 44 689999999998888887654
No 143
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=98.97 E-value=2.7e-08 Score=101.82 Aligned_cols=146 Identities=18% Similarity=0.228 Sum_probs=92.7
Q ss_pred CccccccChhhHHHHHHHHHHHHhCHHHHHHhCCCCCceeEEeCCCCCcHHHHHHHHHHHc-----CCCeEEecccCcCC
Q 035603 191 TFDTLAMASKKKEAIKKDLIKFTEGKEYYAKIGKAWKRGYLLFGPPGTGKSTMIAAMANCL-----NYDVYDLELTSVEN 265 (431)
Q Consensus 191 ~f~~l~g~~~~k~~i~~~l~~~~~~~~~~~~~g~~~~rg~LL~GPPGtGKTsla~aiA~~l-----~~~i~~l~~~~~~~ 265 (431)
..+.+++-++..+.|...+...+.+ ..+..+++|||||||||++++.+++++ ++.++.+++....+
T Consensus 28 ~P~~l~~Re~e~~~l~~~l~~~~~~---------~~~~~~lI~G~~GtGKT~l~~~v~~~l~~~~~~~~~v~in~~~~~~ 98 (394)
T PRK00411 28 VPENLPHREEQIEELAFALRPALRG---------SRPLNVLIYGPPGTGKTTTVKKVFEELEEIAVKVVYVYINCQIDRT 98 (394)
T ss_pred cCCCCCCHHHHHHHHHHHHHHHhCC---------CCCCeEEEECCCCCCHHHHHHHHHHHHHHhcCCcEEEEEECCcCCC
Confidence 3456777777767766665544432 124568999999999999999999877 56788888765432
Q ss_pred hHH-HHHHHHHh-----------------------hhc--------cc-------chhhHHHHHHHHhcCcccCCCCceE
Q 035603 266 NNE-LRSLLVDI-----------------------SSK--------KK-------KSNVTLSGLLNCIGGLWSTCGGERI 306 (431)
Q Consensus 266 ~~~-l~~l~~~~-----------------------~~~--------~~-------~~~~~~s~lL~~ldg~~~~~~~~~i 306 (431)
... +..++... ... ++ .....+..|++.++.. .+.++.
T Consensus 99 ~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~viviDE~d~l~~~~~~~~l~~l~~~~~~~---~~~~v~ 175 (394)
T PRK00411 99 RYAIFSEIARQLFGHPPPSSGLSFDELFDKIAEYLDERDRVLIVALDDINYLFEKEGNDVLYSLLRAHEEY---PGARIG 175 (394)
T ss_pred HHHHHHHHHHHhcCCCCCCCCCCHHHHHHHHHHHHHhcCCEEEEEECCHhHhhccCCchHHHHHHHhhhcc---CCCeEE
Confidence 211 11111111 000 11 1223455555555443 223577
Q ss_pred EEEecCCC---CCCChhhhccCce-eEEEEcCCCCHHHHHHHHHHhhc
Q 035603 307 IVFTTNHV---DKLDPALIRRGRM-DKHIEMPYCCFEAFKVLAKNYLE 350 (431)
Q Consensus 307 vI~TTN~~---~~Ld~AllRpGRf-d~~I~~~~p~~~~r~~i~~~~l~ 350 (431)
+|+++|.. +.+++.+.+ |+ ...|.|++++.++..++++..+.
T Consensus 176 vI~i~~~~~~~~~l~~~~~s--~~~~~~i~f~py~~~e~~~il~~r~~ 221 (394)
T PRK00411 176 VIGISSDLTFLYILDPRVKS--VFRPEEIYFPPYTADEIFDILKDRVE 221 (394)
T ss_pred EEEEECCcchhhhcCHHHHh--cCCcceeecCCCCHHHHHHHHHHHHH
Confidence 88888866 467888876 55 36789999999999999888764
No 144
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=98.97 E-value=8.2e-09 Score=115.55 Aligned_cols=144 Identities=18% Similarity=0.238 Sum_probs=96.1
Q ss_pred CCCCccccccChhhHHHHHHHHHHHHhCHHHHHHhCCCCCceeEEeCCCCCcHHHHHHHHHHHc----------CCCeEE
Q 035603 188 HPATFDTLAMASKKKEAIKKDLIKFTEGKEYYAKIGKAWKRGYLLFGPPGTGKSTMIAAMANCL----------NYDVYD 257 (431)
Q Consensus 188 ~p~~f~~l~g~~~~k~~i~~~l~~~~~~~~~~~~~g~~~~rg~LL~GPPGtGKTsla~aiA~~l----------~~~i~~ 257 (431)
.|..++.++|.++..+.+++.+ . ...+...+|+||||||||++++++|..+ +.+++.
T Consensus 168 ~~~~~~~~igr~~ei~~~~~~l----~---------r~~~~n~lL~G~pGvGKT~l~~~la~~i~~~~~p~~l~~~~~~~ 234 (852)
T TIGR03346 168 REGKLDPVIGRDEEIRRTIQVL----S---------RRTKNNPVLIGEPGVGKTAIVEGLAQRIVNGDVPESLKNKRLLA 234 (852)
T ss_pred hCCCCCcCCCcHHHHHHHHHHH----h---------cCCCCceEEEcCCCCCHHHHHHHHHHHHhccCCchhhcCCeEEE
Confidence 4667899999887655544432 1 1234678999999999999999999985 678888
Q ss_pred ecccCcC--------ChHHHHHHHHHhhhc--------c--------cchhhHHHHHHHHhcCcccCCCCceEEEEecCC
Q 035603 258 LELTSVE--------NNNELRSLLVDISSK--------K--------KKSNVTLSGLLNCIGGLWSTCGGERIIVFTTNH 313 (431)
Q Consensus 258 l~~~~~~--------~~~~l~~l~~~~~~~--------~--------~~~~~~~s~lL~~ldg~~~~~~~~~ivI~TTN~ 313 (431)
++++.+. ....+..++...... + +..... ....+.|.... ..+.+.+|++||.
T Consensus 235 l~~~~l~a~~~~~g~~e~~l~~~l~~~~~~~~~~ILfIDEih~l~~~g~~~~~-~d~~~~Lk~~l--~~g~i~~IgaTt~ 311 (852)
T TIGR03346 235 LDMGALIAGAKYRGEFEERLKAVLNEVTKSEGQIILFIDELHTLVGAGKAEGA-MDAGNMLKPAL--ARGELHCIGATTL 311 (852)
T ss_pred eeHHHHhhcchhhhhHHHHHHHHHHHHHhcCCCeEEEeccHHHhhcCCCCcch-hHHHHHhchhh--hcCceEEEEeCcH
Confidence 8776542 123566777655321 0 001100 11223333222 2345888988887
Q ss_pred CC-----CCChhhhccCceeEEEEcCCCCHHHHHHHHHHhhc
Q 035603 314 VD-----KLDPALIRRGRMDKHIEMPYCCFEAFKVLAKNYLE 350 (431)
Q Consensus 314 ~~-----~Ld~AllRpGRfd~~I~~~~p~~~~r~~i~~~~l~ 350 (431)
.+ .+|+|+.| ||. .|.++.|+.+++..|++.+..
T Consensus 312 ~e~r~~~~~d~al~r--Rf~-~i~v~~p~~~~~~~iL~~~~~ 350 (852)
T TIGR03346 312 DEYRKYIEKDAALER--RFQ-PVFVDEPTVEDTISILRGLKE 350 (852)
T ss_pred HHHHHHhhcCHHHHh--cCC-EEEeCCCCHHHHHHHHHHHHH
Confidence 64 58999999 996 589999999999999887643
No 145
>PRK08058 DNA polymerase III subunit delta'; Validated
Probab=98.95 E-value=1.3e-08 Score=102.03 Aligned_cols=138 Identities=17% Similarity=0.225 Sum_probs=94.8
Q ss_pred Ccccccc-ChhhHHHHHHHHHHHHhCHHHHHHhCCCCCceeEEeCCCCCcHHHHHHHHHHHcCCC---------------
Q 035603 191 TFDTLAM-ASKKKEAIKKDLIKFTEGKEYYAKIGKAWKRGYLLFGPPGTGKSTMIAAMANCLNYD--------------- 254 (431)
Q Consensus 191 ~f~~l~g-~~~~k~~i~~~l~~~~~~~~~~~~~g~~~~rg~LL~GPPGtGKTsla~aiA~~l~~~--------------- 254 (431)
.|++|.| .+.+.+.|...+. . | ..+..||||||+|+||+++|+++|+.+-+.
T Consensus 3 ~~~~i~~~q~~~~~~L~~~~~----~-------~-~l~ha~Lf~G~~G~gk~~~a~~la~~l~c~~~~~~~~cg~C~~c~ 70 (329)
T PRK08058 3 TWEQLTALQPVVVKMLQNSIA----K-------N-RLSHAYLFEGAKGTGKKATALWLAKSLFCLERNGVEPCGTCTNCK 70 (329)
T ss_pred cHHHHHhhHHHHHHHHHHHHH----c-------C-CCCceEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCCcCHHHH
Confidence 3677777 7777776655432 1 1 245689999999999999999999987432
Q ss_pred ---------eEEecccCc-CChHHHHHHHHHhhhc--------------ccchhhHHHHHHHHhcCcccCCCCceEEEEe
Q 035603 255 ---------VYDLELTSV-ENNNELRSLLVDISSK--------------KKKSNVTLSGLLNCIGGLWSTCGGERIIVFT 310 (431)
Q Consensus 255 ---------i~~l~~~~~-~~~~~l~~l~~~~~~~--------------~~~~~~~~s~lL~~ldg~~~~~~~~~ivI~T 310 (431)
+..+....- -..+.++++....... +.-+....+.||..|+. +++.+++|++
T Consensus 71 ~~~~~~hpD~~~i~~~~~~i~id~ir~l~~~~~~~~~~~~~kvviI~~a~~~~~~a~NaLLK~LEE----Pp~~~~~Il~ 146 (329)
T PRK08058 71 RIDSGNHPDVHLVAPDGQSIKKDQIRYLKEEFSKSGVESNKKVYIIEHADKMTASAANSLLKFLEE----PSGGTTAILL 146 (329)
T ss_pred HHhcCCCCCEEEeccccccCCHHHHHHHHHHHhhCCcccCceEEEeehHhhhCHHHHHHHHHHhcC----CCCCceEEEE
Confidence 333322111 1235566665443321 23345577889999985 3456888899
Q ss_pred cCCCCCCChhhhccCceeEEEEcCCCCHHHHHHHHHH
Q 035603 311 TNHVDKLDPALIRRGRMDKHIEMPYCCFEAFKVLAKN 347 (431)
Q Consensus 311 TN~~~~Ld~AllRpGRfd~~I~~~~p~~~~r~~i~~~ 347 (431)
|+.+..|.|+++.++ ..|+|++|+.++....++.
T Consensus 147 t~~~~~ll~TIrSRc---~~i~~~~~~~~~~~~~L~~ 180 (329)
T PRK08058 147 TENKHQILPTILSRC---QVVEFRPLPPESLIQRLQE 180 (329)
T ss_pred eCChHhCcHHHHhhc---eeeeCCCCCHHHHHHHHHH
Confidence 999999999999844 6799999998887766654
No 146
>CHL00095 clpC Clp protease ATP binding subunit
Probab=98.94 E-value=1.1e-08 Score=114.07 Aligned_cols=137 Identities=20% Similarity=0.275 Sum_probs=93.7
Q ss_pred CCccccccChhhHHHHHHHHHHHHhCHHHHHHhCCCCCceeEEeCCCCCcHHHHHHHHHHHc----------CCCeEEec
Q 035603 190 ATFDTLAMASKKKEAIKKDLIKFTEGKEYYAKIGKAWKRGYLLFGPPGTGKSTMIAAMANCL----------NYDVYDLE 259 (431)
Q Consensus 190 ~~f~~l~g~~~~k~~i~~~l~~~~~~~~~~~~~g~~~~rg~LL~GPPGtGKTsla~aiA~~l----------~~~i~~l~ 259 (431)
..++.|+|-++..+.+.+.+. ...++++||+||||||||++|+++|..+ +..++.++
T Consensus 176 ~~~~~~igr~~ei~~~~~~L~-------------r~~~~n~lL~G~pGvGKTal~~~la~~i~~~~vp~~l~~~~i~~l~ 242 (821)
T CHL00095 176 GNLDPVIGREKEIERVIQILG-------------RRTKNNPILIGEPGVGKTAIAEGLAQRIVNRDVPDILEDKLVITLD 242 (821)
T ss_pred CCCCCCCCcHHHHHHHHHHHc-------------ccccCCeEEECCCCCCHHHHHHHHHHHHHhCCCChhhcCCeEEEee
Confidence 346778888777777665432 2245689999999999999999999976 47899998
Q ss_pred ccCcC--------ChHHHHHHHHHhhhc-------c----------cchhhHHHHHHH-HhcCcccCCCCceEEEEecCC
Q 035603 260 LTSVE--------NNNELRSLLVDISSK-------K----------KKSNVTLSGLLN-CIGGLWSTCGGERIIVFTTNH 313 (431)
Q Consensus 260 ~~~~~--------~~~~l~~l~~~~~~~-------~----------~~~~~~~s~lL~-~ldg~~~~~~~~~ivI~TTN~ 313 (431)
++.+. ....++.++.++... + .......+.+|. .+. .+++.+|++||.
T Consensus 243 ~~~l~ag~~~~ge~e~rl~~i~~~~~~~~~~ILfiDEih~l~~~g~~~g~~~~a~lLkp~l~------rg~l~~IgaTt~ 316 (821)
T CHL00095 243 IGLLLAGTKYRGEFEERLKRIFDEIQENNNIILVIDEVHTLIGAGAAEGAIDAANILKPALA------RGELQCIGATTL 316 (821)
T ss_pred HHHHhccCCCccHHHHHHHHHHHHHHhcCCeEEEEecHHHHhcCCCCCCcccHHHHhHHHHh------CCCcEEEEeCCH
Confidence 76542 134677787665432 0 011122333333 222 245788888886
Q ss_pred CC-----CCChhhhccCceeEEEEcCCCCHHHHHHHHHHh
Q 035603 314 VD-----KLDPALIRRGRMDKHIEMPYCCFEAFKVLAKNY 348 (431)
Q Consensus 314 ~~-----~Ld~AllRpGRfd~~I~~~~p~~~~r~~i~~~~ 348 (431)
.+ ..||+|.| ||. .|.++.|+.++...|++..
T Consensus 317 ~ey~~~ie~D~aL~r--Rf~-~I~v~ep~~~e~~aILr~l 353 (821)
T CHL00095 317 DEYRKHIEKDPALER--RFQ-PVYVGEPSVEETIEILFGL 353 (821)
T ss_pred HHHHHHHhcCHHHHh--cce-EEecCCCCHHHHHHHHHHH
Confidence 54 57999999 996 4899999998888887653
No 147
>PF07726 AAA_3: ATPase family associated with various cellular activities (AAA); InterPro: IPR011703 This entry includes some of the AAA proteins not detected by the IPR003959 from INTERPRO model. AAA ATPases form a large, functionally diverse protein family belonging to the AAA+ superfamily of ring-shaped P-loop NTPases, which exert their activity through the energy-dependent unfolding of macromolecules. AAA ATPases contain a P-loop NTPase domain, which is the most abundant class of NTP-binding protein fold, and is found throughout all kingdoms of life []. P-loop NTPase domains act to hydrolyse the beta-gamma phosphate bond of bound nucleoside triphosphate. There are two classes of P-loop domains: the KG (kinase-GTPase) division, and the ASCE division, the latter including the AAA+ group as well as several other ATPases. There are at least six major clades of AAA domains (metalloproteases, meiotic proteins, D1 and D2 domains of ATPases with two AAA domains, proteasome subunits, and BSC1), as well as several minor clades, some of which consist of hypothetical proteins []. The domain organisation of AAA ATPases consists of a non-ATPase N-terminal domain that acts in substrate recognition, followed by one or two AAA domains (D1 and D2), one of which may be degenerate.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 2R44_A.
Probab=98.93 E-value=7.3e-10 Score=94.76 Aligned_cols=97 Identities=24% Similarity=0.304 Sum_probs=55.5
Q ss_pred eeEEeCCCCCcHHHHHHHHHHHcCCCeEEecccCcCChHHHHHH--HHHhhhc------------------ccchhhHHH
Q 035603 229 GYLLFGPPGTGKSTMIAAMANCLNYDVYDLELTSVENNNELRSL--LVDISSK------------------KKKSNVTLS 288 (431)
Q Consensus 229 g~LL~GPPGtGKTsla~aiA~~l~~~i~~l~~~~~~~~~~l~~l--~~~~~~~------------------~~~~~~~~s 288 (431)
.+||.|+||+|||++|+++|..+|.++..+.++.--...+|... +....+. +.....+.+
T Consensus 1 HvLleg~PG~GKT~la~~lA~~~~~~f~RIq~tpdllPsDi~G~~v~~~~~~~f~~~~GPif~~ill~DEiNrappktQs 80 (131)
T PF07726_consen 1 HVLLEGVPGVGKTTLAKALARSLGLSFKRIQFTPDLLPSDILGFPVYDQETGEFEFRPGPIFTNILLADEINRAPPKTQS 80 (131)
T ss_dssp -EEEES---HHHHHHHHHHHHHTT--EEEEE--TT--HHHHHEEEEEETTTTEEEEEE-TT-SSEEEEETGGGS-HHHHH
T ss_pred CEeeECCCccHHHHHHHHHHHHcCCceeEEEecCCCCcccceeeeeeccCCCeeEeecChhhhceeeecccccCCHHHHH
Confidence 37999999999999999999999999999887632223333221 1111111 455678899
Q ss_pred HHHHHhc-------CcccCCCCceEEEEecCCCC-----CCChhhhccCce
Q 035603 289 GLLNCIG-------GLWSTCGGERIIVFTTNHVD-----KLDPALIRRGRM 327 (431)
Q Consensus 289 ~lL~~ld-------g~~~~~~~~~ivI~TTN~~~-----~Ld~AllRpGRf 327 (431)
.||..|. |..-..++..+||+|-|..+ .|+.|++. ||
T Consensus 81 AlLeam~Er~Vt~~g~~~~lp~pf~ViATqNp~e~~Gty~Lpea~~D--RF 129 (131)
T PF07726_consen 81 ALLEAMEERQVTIDGQTYPLPDPFFVIATQNPVEQEGTYPLPEAQLD--RF 129 (131)
T ss_dssp HHHHHHHHSEEEETTEEEE--SS-EEEEEE-TT--S------HHHHT--TS
T ss_pred HHHHHHHcCeEEeCCEEEECCCcEEEEEecCccccCceecCCHHHhc--cc
Confidence 9999884 33333445678999999887 79999998 77
No 148
>PHA02244 ATPase-like protein
Probab=98.92 E-value=1.2e-08 Score=102.27 Aligned_cols=107 Identities=21% Similarity=0.281 Sum_probs=69.9
Q ss_pred CceeEEeCCCCCcHHHHHHHHHHHcCCCeEEecccCcCChHHHH-----------HHHHHhhhc---------ccchhhH
Q 035603 227 KRGYLLFGPPGTGKSTMIAAMANCLNYDVYDLELTSVENNNELR-----------SLLVDISSK---------KKKSNVT 286 (431)
Q Consensus 227 ~rg~LL~GPPGtGKTsla~aiA~~l~~~i~~l~~~~~~~~~~l~-----------~l~~~~~~~---------~~~~~~~ 286 (431)
+..+||+||||||||++|++||..++.+++.++... +...+. .-|..+... +.....+
T Consensus 119 ~~PVLL~GppGtGKTtLA~aLA~~lg~pfv~In~l~--d~~~L~G~i~~~g~~~dgpLl~A~~~GgvLiLDEId~a~p~v 196 (383)
T PHA02244 119 NIPVFLKGGAGSGKNHIAEQIAEALDLDFYFMNAIM--DEFELKGFIDANGKFHETPFYEAFKKGGLFFIDEIDASIPEA 196 (383)
T ss_pred CCCEEEECCCCCCHHHHHHHHHHHhCCCEEEEecCh--HHHhhcccccccccccchHHHHHhhcCCEEEEeCcCcCCHHH
Confidence 357999999999999999999999999999887321 110110 011111111 2233444
Q ss_pred HHHHHHHhcC-c------ccCCCCceEEEEecCCC-----------CCCChhhhccCceeEEEEcCCCCH
Q 035603 287 LSGLLNCIGG-L------WSTCGGERIIVFTTNHV-----------DKLDPALIRRGRMDKHIEMPYCCF 338 (431)
Q Consensus 287 ~s~lL~~ldg-~------~~~~~~~~ivI~TTN~~-----------~~Ld~AllRpGRfd~~I~~~~p~~ 338 (431)
...|...++. . .-....++-+|+|+|.+ ..|++|++. || .+|++++|+.
T Consensus 197 q~~L~~lLd~r~l~l~g~~i~~h~~FRlIATsN~~~~G~~~~y~G~k~L~~AllD--RF-v~I~~dyp~~ 263 (383)
T PHA02244 197 LIIINSAIANKFFDFADERVTAHEDFRVISAGNTLGKGADHIYVARNKIDGATLD--RF-APIEFDYDEK 263 (383)
T ss_pred HHHHHHHhccCeEEecCcEEecCCCEEEEEeeCCCccCcccccCCCcccCHHHHh--hc-EEeeCCCCcH
Confidence 5556666542 1 01122457899999973 578999999 99 5799999984
No 149
>TIGR02030 BchI-ChlI magnesium chelatase ATPase subunit I. This model represents one of two ATPase subunits of the trimeric magnesium chelatase responsible for insertion of magnesium ion into protoporphyrin IX. This is an essential step in the biosynthesis of both chlorophyll and bacteriochlorophyll. This subunit is found in green plants, photosynthetic algae, cyanobacteria and other photosynthetic bacteria.
Probab=98.92 E-value=2.6e-08 Score=99.71 Aligned_cols=144 Identities=20% Similarity=0.222 Sum_probs=92.4
Q ss_pred CccccccChhhHHHHHHHHHHHHhCHHHHHHhCCCCCceeEEeCCCCCcHHHHHHHHHHHc-------CCCeE-------
Q 035603 191 TFDTLAMASKKKEAIKKDLIKFTEGKEYYAKIGKAWKRGYLLFGPPGTGKSTMIAAMANCL-------NYDVY------- 256 (431)
Q Consensus 191 ~f~~l~g~~~~k~~i~~~l~~~~~~~~~~~~~g~~~~rg~LL~GPPGtGKTsla~aiA~~l-------~~~i~------- 256 (431)
+|..|+|.+++|..+.-.+..+ ...++||.||||+|||++++++++.+ ++++-
T Consensus 2 pf~~ivgq~~~~~al~~~~~~~-------------~~g~vli~G~~G~gKttl~r~~~~~~~~~~~~~~~~~~~~~~~~~ 68 (337)
T TIGR02030 2 PFTAIVGQDEMKLALLLNVIDP-------------KIGGVMVMGDRGTGKSTAVRALAALLPEIKAVAGCPFNSSPSDPE 68 (337)
T ss_pred CccccccHHHHHHHHHHHhcCC-------------CCCeEEEEcCCCCCHHHHHHHHHHhhcccccccCCCCCCCCCCcc
Confidence 5889999999998875433221 23479999999999999999999877 22211
Q ss_pred ------E------------------ecccC------cCChHHHHHHHH------------Hhhhc-------ccchhhHH
Q 035603 257 ------D------------------LELTS------VENNNELRSLLV------------DISSK-------KKKSNVTL 287 (431)
Q Consensus 257 ------~------------------l~~~~------~~~~~~l~~l~~------------~~~~~-------~~~~~~~~ 287 (431)
. .++.. +.+.-.+...+. ++.+. +.-+....
T Consensus 69 ~~~~~~r~~~~~~~~~~~~~~~~~~~~lP~~~t~d~l~G~~d~~~~l~~g~~~~~~GlL~~A~~GvL~lDEi~~L~~~~Q 148 (337)
T TIGR02030 69 MMCEEVRIRVDSQEPLSIIKKPVPVVDLPLGATEDRVCGTLDIERALTEGVKAFEPGLLARANRGILYIDEVNLLEDHLV 148 (337)
T ss_pred ccChHHhhhhhcccccccccCCCCcCCCCCCCcccceecchhHhhHhhcCCEEeecCcceeccCCEEEecChHhCCHHHH
Confidence 0 01110 101111222111 11101 23345667
Q ss_pred HHHHHHhcC---------cccCCCCceEEEEecCCCC-CCChhhhccCceeEEEEcCCCCH-HHHHHHHHHhh
Q 035603 288 SGLLNCIGG---------LWSTCGGERIIVFTTNHVD-KLDPALIRRGRMDKHIEMPYCCF-EAFKVLAKNYL 349 (431)
Q Consensus 288 s~lL~~ldg---------~~~~~~~~~ivI~TTN~~~-~Ld~AllRpGRfd~~I~~~~p~~-~~r~~i~~~~l 349 (431)
+.|++.|+. ........+++|+|+|..+ .|+++|+. ||.+++.+++|+. +++.+|++...
T Consensus 149 ~~Ll~~l~~g~~~v~r~G~~~~~~~r~iviat~np~eg~l~~~Lld--Rf~l~i~l~~p~~~eer~eIL~~~~ 219 (337)
T TIGR02030 149 DVLLDVAASGWNVVEREGISIRHPARFVLVGSGNPEEGELRPQLLD--RFGLHAEIRTVRDVELRVEIVERRT 219 (337)
T ss_pred HHHHHHHHhCCeEEEECCEEEEcCCCEEEEeccccccCCCCHHHHh--hcceEEECCCCCCHHHHHHHHHhhh
Confidence 788888742 2222233468888888655 79999999 9999999999975 88888888754
No 150
>PRK14088 dnaA chromosomal replication initiation protein; Provisional
Probab=98.88 E-value=2e-08 Score=104.36 Aligned_cols=184 Identities=16% Similarity=0.235 Sum_probs=100.3
Q ss_pred eccCCCCccccccChhhHHHHHHHHHHHHhCHHHHHHhCCCCCceeEEeCCCCCcHHHHHHHHHHHc-----CCCeEEec
Q 035603 185 YFEHPATFDTLAMASKKKEAIKKDLIKFTEGKEYYAKIGKAWKRGYLLFGPPGTGKSTMIAAMANCL-----NYDVYDLE 259 (431)
Q Consensus 185 ~~~~p~~f~~l~g~~~~k~~i~~~l~~~~~~~~~~~~~g~~~~rg~LL~GPPGtGKTsla~aiA~~l-----~~~i~~l~ 259 (431)
++.+..+|++.+..+.-.. ....+..+..++ | +..+++||||||||||+|++|+|+++ +..++.++
T Consensus 97 ~l~~~~tFdnFv~g~~n~~-a~~~~~~~~~~~------~--~~n~l~lyG~~G~GKTHLl~ai~~~l~~~~~~~~v~yi~ 167 (440)
T PRK14088 97 PLNPDYTFENFVVGPGNSF-AYHAALEVAKNP------G--RYNPLFIYGGVGLGKTHLLQSIGNYVVQNEPDLRVMYIT 167 (440)
T ss_pred CCCCCCcccccccCCchHH-HHHHHHHHHhCc------C--CCCeEEEEcCCCCcHHHHHHHHHHHHHHhCCCCeEEEEE
Confidence 3455678999764333222 223343333322 2 23469999999999999999999986 45667666
Q ss_pred ccCcCCh-------HHHHHHHHHhhhc------ccc-----hhhHHHHHHHHhcCcccCCCCceEEEEecCCCCC---CC
Q 035603 260 LTSVENN-------NELRSLLVDISSK------KKK-----SNVTLSGLLNCIGGLWSTCGGERIIVFTTNHVDK---LD 318 (431)
Q Consensus 260 ~~~~~~~-------~~l~~l~~~~~~~------~~~-----~~~~~s~lL~~ldg~~~~~~~~~ivI~TTN~~~~---Ld 318 (431)
..++... ..+..+....... ++. ...+...|+..++.+.... ..+||.+.+.|.. ++
T Consensus 168 ~~~f~~~~~~~~~~~~~~~f~~~~~~~~dvLlIDDi~~l~~~~~~q~elf~~~n~l~~~~--k~iIitsd~~p~~l~~l~ 245 (440)
T PRK14088 168 SEKFLNDLVDSMKEGKLNEFREKYRKKVDVLLIDDVQFLIGKTGVQTELFHTFNELHDSG--KQIVICSDREPQKLSEFQ 245 (440)
T ss_pred HHHHHHHHHHHHhcccHHHHHHHHHhcCCEEEEechhhhcCcHHHHHHHHHHHHHHHHcC--CeEEEECCCCHHHHHHHH
Confidence 5443100 0111111111111 111 1122344555555554322 2444444455554 55
Q ss_pred hhhhccCceeEEEEcCCCCHHHHHHHHHHhhchhcchhHHH-HHhHhccCCCCHHHHHHHhc
Q 035603 319 PALIRRGRMDKHIEMPYCCFEAFKVLAKNYLEIESHELFHE-IGSLLGETDITPADVAENLM 379 (431)
Q Consensus 319 ~AllRpGRfd~~I~~~~p~~~~r~~i~~~~l~~~~~~~~~~-i~~l~~~~~~s~adI~~~l~ 379 (431)
+.+..+......+.+..|+.+.|..|++.........+.++ +.-+++...=+..++.+.+.
T Consensus 246 ~rL~SR~~~gl~v~i~~pd~e~r~~IL~~~~~~~~~~l~~ev~~~Ia~~~~~~~R~L~g~l~ 307 (440)
T PRK14088 246 DRLVSRFQMGLVAKLEPPDEETRKKIARKMLEIEHGELPEEVLNFVAENVDDNLRRLRGAII 307 (440)
T ss_pred HHHhhHHhcCceEeeCCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHhccccCHHHHHHHHH
Confidence 67777222357889999999999999998875433333333 34444443445555555443
No 151
>PTZ00112 origin recognition complex 1 protein; Provisional
Probab=98.87 E-value=1.1e-07 Score=103.35 Aligned_cols=147 Identities=16% Similarity=0.191 Sum_probs=87.7
Q ss_pred cccccChhhHHHHHHHHHHHHhCHHHHHHhCCCCCceeEEeCCCCCcHHHHHHHHHHHc----------CCCeEEecccC
Q 035603 193 DTLAMASKKKEAIKKDLIKFTEGKEYYAKIGKAWKRGYLLFGPPGTGKSTMIAAMANCL----------NYDVYDLELTS 262 (431)
Q Consensus 193 ~~l~g~~~~k~~i~~~l~~~~~~~~~~~~~g~~~~rg~LL~GPPGtGKTsla~aiA~~l----------~~~i~~l~~~~ 262 (431)
+.|.+-++..+.|...+...+.. -.....++++||||||||.+++.+..+| .+.++.+++..
T Consensus 755 D~LPhREeEIeeLasfL~paIkg--------sgpnnvLYIyG~PGTGKTATVK~VLrELqeeaeqk~lp~f~vVYINCm~ 826 (1164)
T PTZ00112 755 KYLPCREKEIKEVHGFLESGIKQ--------SGSNQILYISGMPGTGKTATVYSVIQLLQHKTKQKLLPSFNVFEINGMN 826 (1164)
T ss_pred CcCCChHHHHHHHHHHHHHHHhc--------CCCCceEEEECCCCCCHHHHHHHHHHHHHHHHhhccCCCceEEEEeCCc
Confidence 45556566666655555444432 2233445799999999999999998766 25678888866
Q ss_pred cCChHH-----------------------HHHHHHHhhhc---------ccch---hhHHHHHHHHhcCcccCCCCceEE
Q 035603 263 VENNNE-----------------------LRSLLVDISSK---------KKKS---NVTLSGLLNCIGGLWSTCGGERII 307 (431)
Q Consensus 263 ~~~~~~-----------------------l~~l~~~~~~~---------~~~~---~~~~s~lL~~ldg~~~~~~~~~iv 307 (431)
+.+... +..+|...... ++.. ...-..|++.++... ..+..++|
T Consensus 827 Lstp~sIYqvI~qqL~g~~P~~GlsS~evLerLF~~L~k~~r~v~IIILDEID~L~kK~QDVLYnLFR~~~-~s~SKLiL 905 (1164)
T PTZ00112 827 VVHPNAAYQVLYKQLFNKKPPNALNSFKILDRLFNQNKKDNRNVSILIIDEIDYLITKTQKVLFTLFDWPT-KINSKLVL 905 (1164)
T ss_pred cCCHHHHHHHHHHHHcCCCCCccccHHHHHHHHHhhhhcccccceEEEeehHhhhCccHHHHHHHHHHHhh-ccCCeEEE
Confidence 543322 22222221110 0000 001112333333221 13445889
Q ss_pred EEecCC---CCCCChhhhccCceeE-EEEcCCCCHHHHHHHHHHhhc
Q 035603 308 VFTTNH---VDKLDPALIRRGRMDK-HIEMPYCCFEAFKVLAKNYLE 350 (431)
Q Consensus 308 I~TTN~---~~~Ld~AllRpGRfd~-~I~~~~p~~~~r~~i~~~~l~ 350 (431)
|+++|. ++.|+|.+.. ||.. .|.|++++.+++.+|++..+.
T Consensus 906 IGISNdlDLperLdPRLRS--RLg~eeIvF~PYTaEQL~dILk~RAe 950 (1164)
T PTZ00112 906 IAISNTMDLPERLIPRCRS--RLAFGRLVFSPYKGDEIEKIIKERLE 950 (1164)
T ss_pred EEecCchhcchhhhhhhhh--ccccccccCCCCCHHHHHHHHHHHHH
Confidence 999985 5678888887 5543 488899999999999988775
No 152
>COG0470 HolB ATPase involved in DNA replication [DNA replication, recombination, and repair]
Probab=98.87 E-value=2.2e-08 Score=99.33 Aligned_cols=109 Identities=23% Similarity=0.297 Sum_probs=77.8
Q ss_pred eeEEeCCCCCcHHHHHHHHHHHcC------------------------CCeEEecccCcCC----hHHHHHHHHHhhhc-
Q 035603 229 GYLLFGPPGTGKSTMIAAMANCLN------------------------YDVYDLELTSVEN----NNELRSLLVDISSK- 279 (431)
Q Consensus 229 g~LL~GPPGtGKTsla~aiA~~l~------------------------~~i~~l~~~~~~~----~~~l~~l~~~~~~~- 279 (431)
.+||+||||||||++|.++|+++. .+++.++.++... .+.++++.......
T Consensus 26 alL~~Gp~G~Gktt~a~~lA~~l~~~~~~~~~~~~~~~~~~~~~~~~~~d~lel~~s~~~~~~i~~~~vr~~~~~~~~~~ 105 (325)
T COG0470 26 ALLFYGPPGVGKTTAALALAKELLCENPTGLLPCGHCRSCKLIPAGNHPDFLELNPSDLRKIDIIVEQVRELAEFLSESP 105 (325)
T ss_pred eeeeeCCCCCCHHHHHHHHHHHHhCCCcccCCcccchhhhhHHhhcCCCceEEecccccCCCcchHHHHHHHHHHhccCC
Confidence 799999999999999999999988 5888898888755 23444443322211
Q ss_pred -------------ccchhhHHHHHHHHhcCcccCCCCceEEEEecCCCCCCChhhhccCceeEEEEcCCCCHHHHHHH
Q 035603 280 -------------KKKSNVTLSGLLNCIGGLWSTCGGERIIVFTTNHVDKLDPALIRRGRMDKHIEMPYCCFEAFKVL 344 (431)
Q Consensus 280 -------------~~~~~~~~s~lL~~ldg~~~~~~~~~ivI~TTN~~~~Ld~AllRpGRfd~~I~~~~p~~~~r~~i 344 (431)
+.-.....+.++..+.. +.....+|++||.+..+-|.+..++ ..+.|+.|+...+...
T Consensus 106 ~~~~~kviiidead~mt~~A~nallk~lEe----p~~~~~~il~~n~~~~il~tI~SRc---~~i~f~~~~~~~~i~~ 176 (325)
T COG0470 106 LEGGYKVVIIDEADKLTEDAANALLKTLEE----PPKNTRFILITNDPSKILPTIRSRC---QRIRFKPPSRLEAIAW 176 (325)
T ss_pred CCCCceEEEeCcHHHHhHHHHHHHHHHhcc----CCCCeEEEEEcCChhhccchhhhcc---eeeecCCchHHHHHHH
Confidence 22233445667777663 4556899999999999999888843 5788877665544433
No 153
>PRK08727 hypothetical protein; Validated
Probab=98.86 E-value=6.3e-08 Score=92.35 Aligned_cols=146 Identities=20% Similarity=0.246 Sum_probs=83.6
Q ss_pred eccCCCCccccccChhhHHHHHHHHHHHHhCHHHHHHhCCCCCceeEEeCCCCCcHHHHHHHHHHHc---CCCeEEeccc
Q 035603 185 YFEHPATFDTLAMASKKKEAIKKDLIKFTEGKEYYAKIGKAWKRGYLLFGPPGTGKSTMIAAMANCL---NYDVYDLELT 261 (431)
Q Consensus 185 ~~~~p~~f~~l~g~~~~k~~i~~~l~~~~~~~~~~~~~g~~~~rg~LL~GPPGtGKTsla~aiA~~l---~~~i~~l~~~ 261 (431)
+.....+|++.++.+.- ....+..... | .+...++|+||||||||.|++|+++++ +..+..++..
T Consensus 11 ~~~~~~~f~~f~~~~~n---~~~~~~~~~~--------~-~~~~~l~l~G~~G~GKThL~~a~~~~~~~~~~~~~y~~~~ 78 (233)
T PRK08727 11 RYPSDQRFDSYIAAPDG---LLAQLQALAA--------G-QSSDWLYLSGPAGTGKTHLALALCAAAEQAGRSSAYLPLQ 78 (233)
T ss_pred CCCCcCChhhccCCcHH---HHHHHHHHHh--------c-cCCCeEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEEeHH
Confidence 34445789997765542 1122211111 1 133569999999999999999997764 4555555544
Q ss_pred CcCChHHHHHHHHHhhhc-----cc-----chhhHHHHHHHHhcCcccCCCCceEEEEecC-CCCCC---ChhhhccCce
Q 035603 262 SVENNNELRSLLVDISSK-----KK-----KSNVTLSGLLNCIGGLWSTCGGERIIVFTTN-HVDKL---DPALIRRGRM 327 (431)
Q Consensus 262 ~~~~~~~l~~l~~~~~~~-----~~-----~~~~~~s~lL~~ldg~~~~~~~~~ivI~TTN-~~~~L---d~AllRpGRf 327 (431)
... ..+.+.+...... +. ........+++.++..... + .-+|+|+| .|..+ +|+|.+ ||
T Consensus 79 ~~~--~~~~~~~~~l~~~dlLiIDDi~~l~~~~~~~~~lf~l~n~~~~~-~--~~vI~ts~~~p~~l~~~~~dL~S--Rl 151 (233)
T PRK08727 79 AAA--GRLRDALEALEGRSLVALDGLESIAGQREDEVALFDFHNRARAA-G--ITLLYTARQMPDGLALVLPDLRS--RL 151 (233)
T ss_pred Hhh--hhHHHHHHHHhcCCEEEEeCcccccCChHHHHHHHHHHHHHHHc-C--CeEEEECCCChhhhhhhhHHHHH--HH
Confidence 432 1223333222221 11 1111223344444443221 2 33555554 66655 799998 65
Q ss_pred --eEEEEcCCCCHHHHHHHHHHhh
Q 035603 328 --DKHIEMPYCCFEAFKVLAKNYL 349 (431)
Q Consensus 328 --d~~I~~~~p~~~~r~~i~~~~l 349 (431)
-..++++.|+.+++..+++...
T Consensus 152 ~~~~~~~l~~~~~e~~~~iL~~~a 175 (233)
T PRK08727 152 AQCIRIGLPVLDDVARAAVLRERA 175 (233)
T ss_pred hcCceEEecCCCHHHHHHHHHHHH
Confidence 5789999999999999998754
No 154
>PRK05642 DNA replication initiation factor; Validated
Probab=98.85 E-value=6.7e-08 Score=92.23 Aligned_cols=152 Identities=16% Similarity=0.117 Sum_probs=86.9
Q ss_pred eccCCCCccccccChhhHHHHHHHHHHHHhCHHHHHHhCCCCCceeEEeCCCCCcHHHHHHHHHHHc---CCCeEEeccc
Q 035603 185 YFEHPATFDTLAMASKKKEAIKKDLIKFTEGKEYYAKIGKAWKRGYLLFGPPGTGKSTMIAAMANCL---NYDVYDLELT 261 (431)
Q Consensus 185 ~~~~p~~f~~l~g~~~~k~~i~~~l~~~~~~~~~~~~~g~~~~rg~LL~GPPGtGKTsla~aiA~~l---~~~i~~l~~~ 261 (431)
...+..+|++.+... .....+.+..+.... +-...+.++||||+|||||.|++|+++++ +..++.++..
T Consensus 11 ~~~~~~tfdnF~~~~--~~~a~~~~~~~~~~~------~~~~~~~l~l~G~~G~GKTHLl~a~~~~~~~~~~~v~y~~~~ 82 (234)
T PRK05642 11 RLRDDATFANYYPGA--NAAALGYVERLCEAD------AGWTESLIYLWGKDGVGRSHLLQAACLRFEQRGEPAVYLPLA 82 (234)
T ss_pred CCCCcccccccCcCC--hHHHHHHHHHHhhcc------ccCCCCeEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEeeHH
Confidence 344457899876332 233334443332211 11113678999999999999999999764 5667777665
Q ss_pred CcCCh-HHHHHHHHHhh-------hcccchhhHHHHHHHHhcCcccCCCCceEEEEecCCCCC---CChhhhccCce--e
Q 035603 262 SVENN-NELRSLLVDIS-------SKKKKSNVTLSGLLNCIGGLWSTCGGERIIVFTTNHVDK---LDPALIRRGRM--D 328 (431)
Q Consensus 262 ~~~~~-~~l~~l~~~~~-------~~~~~~~~~~s~lL~~ldg~~~~~~~~~ivI~TTN~~~~---Ld~AllRpGRf--d 328 (431)
++... ..+.+.+.... ............|++.++..... +..+||.++..|.. +.|.|.. |+ -
T Consensus 83 ~~~~~~~~~~~~~~~~d~LiiDDi~~~~~~~~~~~~Lf~l~n~~~~~--g~~ilits~~~p~~l~~~~~~L~S--Rl~~g 158 (234)
T PRK05642 83 ELLDRGPELLDNLEQYELVCLDDLDVIAGKADWEEALFHLFNRLRDS--GRRLLLAASKSPRELPIKLPDLKS--RLTLA 158 (234)
T ss_pred HHHhhhHHHHHhhhhCCEEEEechhhhcCChHHHHHHHHHHHHHHhc--CCEEEEeCCCCHHHcCccCccHHH--HHhcC
Confidence 54311 12222221110 00111122334566666555322 23555555545533 3689988 76 4
Q ss_pred EEEEcCCCCHHHHHHHHHHh
Q 035603 329 KHIEMPYCCFEAFKVLAKNY 348 (431)
Q Consensus 329 ~~I~~~~p~~~~r~~i~~~~ 348 (431)
..+.+..|+.+.+..+++..
T Consensus 159 l~~~l~~~~~e~~~~il~~k 178 (234)
T PRK05642 159 LVFQMRGLSDEDKLRALQLR 178 (234)
T ss_pred eeeecCCCCHHHHHHHHHHH
Confidence 77889999999999998754
No 155
>PRK06620 hypothetical protein; Validated
Probab=98.83 E-value=5.1e-08 Score=91.79 Aligned_cols=141 Identities=17% Similarity=0.199 Sum_probs=80.0
Q ss_pred cCCCCccccccChhhHHHHHHHHHHHHhCHHHHHHhCC-CCCceeEEeCCCCCcHHHHHHHHHHHcCCCeEEecccCcCC
Q 035603 187 EHPATFDTLAMASKKKEAIKKDLIKFTEGKEYYAKIGK-AWKRGYLLFGPPGTGKSTMIAAMANCLNYDVYDLELTSVEN 265 (431)
Q Consensus 187 ~~p~~f~~l~g~~~~k~~i~~~l~~~~~~~~~~~~~g~-~~~rg~LL~GPPGtGKTsla~aiA~~l~~~i~~l~~~~~~~ 265 (431)
.++.+|++++..+.-.. ....+..+.. .++. |..+.++||||||||||+|++++++..+..++. ....
T Consensus 10 ~~~~tfd~Fvvg~~N~~-a~~~~~~~~~------~~~~~~~~~~l~l~Gp~G~GKThLl~a~~~~~~~~~~~--~~~~-- 78 (214)
T PRK06620 10 SSKYHPDEFIVSSSNDQ-AYNIIKNWQC------GFGVNPYKFTLLIKGPSSSGKTYLTKIWQNLSNAYIIK--DIFF-- 78 (214)
T ss_pred CCCCCchhhEecccHHH-HHHHHHHHHH------ccccCCCcceEEEECCCCCCHHHHHHHHHhccCCEEcc--hhhh--
Confidence 34467888765542222 2333333322 1232 223789999999999999999999988753322 1110
Q ss_pred hHHHHHHHHHhhhc------ccchhhHHHHHHHHhcCcccCCCCceEEEEecCCCCC--CChhhhccCcee--EEEEcCC
Q 035603 266 NNELRSLLVDISSK------KKKSNVTLSGLLNCIGGLWSTCGGERIIVFTTNHVDK--LDPALIRRGRMD--KHIEMPY 335 (431)
Q Consensus 266 ~~~l~~l~~~~~~~------~~~~~~~~s~lL~~ldg~~~~~~~~~ivI~TTN~~~~--Ld~AllRpGRfd--~~I~~~~ 335 (431)
.. ..+.. ..- +......+-.++|.+. .. +..++|.++..|.. + |+|+. |+. ..+.+..
T Consensus 79 ~~---~~~~~-~d~lliDdi~~~~~~~lf~l~N~~~---e~--g~~ilits~~~p~~l~l-~~L~S--Rl~~gl~~~l~~ 146 (214)
T PRK06620 79 NE---EILEK-YNAFIIEDIENWQEPALLHIFNIIN---EK--QKYLLLTSSDKSRNFTL-PDLSS--RIKSVLSILLNS 146 (214)
T ss_pred ch---hHHhc-CCEEEEeccccchHHHHHHHHHHHH---hc--CCEEEEEcCCCccccch-HHHHH--HHhCCceEeeCC
Confidence 01 11100 000 1112233334444443 22 23566666655543 5 88888 774 4799999
Q ss_pred CCHHHHHHHHHHhhc
Q 035603 336 CCFEAFKVLAKNYLE 350 (431)
Q Consensus 336 p~~~~r~~i~~~~l~ 350 (431)
|+.+.+..+++....
T Consensus 147 pd~~~~~~~l~k~~~ 161 (214)
T PRK06620 147 PDDELIKILIFKHFS 161 (214)
T ss_pred CCHHHHHHHHHHHHH
Confidence 999999988877653
No 156
>PRK12422 chromosomal replication initiation protein; Provisional
Probab=98.82 E-value=2.8e-08 Score=103.33 Aligned_cols=118 Identities=19% Similarity=0.308 Sum_probs=74.3
Q ss_pred ceeEEeCCCCCcHHHHHHHHHHHc---CCCeEEecccCcCChHHHHH--------HHHHhhhc------c-----cchhh
Q 035603 228 RGYLLFGPPGTGKSTMIAAMANCL---NYDVYDLELTSVENNNELRS--------LLVDISSK------K-----KKSNV 285 (431)
Q Consensus 228 rg~LL~GPPGtGKTsla~aiA~~l---~~~i~~l~~~~~~~~~~l~~--------l~~~~~~~------~-----~~~~~ 285 (431)
.+++||||||+|||+|++|+|+++ +..++.++...+.. .+.. .|...... + .....
T Consensus 142 npl~L~G~~G~GKTHLl~Ai~~~l~~~~~~v~yi~~~~f~~--~~~~~l~~~~~~~f~~~~~~~dvLiIDDiq~l~~k~~ 219 (445)
T PRK12422 142 NPIYLFGPEGSGKTHLMQAAVHALRESGGKILYVRSELFTE--HLVSAIRSGEMQRFRQFYRNVDALFIEDIEVFSGKGA 219 (445)
T ss_pred ceEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEeeHHHHHH--HHHHHHhcchHHHHHHHcccCCEEEEcchhhhcCChh
Confidence 579999999999999999999976 56777776543311 1111 11111111 1 11122
Q ss_pred HHHHHHHHhcCcccCCCCceEEEEecCC-C---CCCChhhhccCcee--EEEEcCCCCHHHHHHHHHHhhchh
Q 035603 286 TLSGLLNCIGGLWSTCGGERIIVFTTNH-V---DKLDPALIRRGRMD--KHIEMPYCCFEAFKVLAKNYLEIE 352 (431)
Q Consensus 286 ~~s~lL~~ldg~~~~~~~~~ivI~TTN~-~---~~Ld~AllRpGRfd--~~I~~~~p~~~~r~~i~~~~l~~~ 352 (431)
+...|+..++.+... + ..+|+|+|. | ..+++.|.+ ||. ..+.++.|+.+.+..+++......
T Consensus 220 ~qeelf~l~N~l~~~-~--k~IIlts~~~p~~l~~l~~rL~S--R~~~Gl~~~l~~pd~e~r~~iL~~k~~~~ 287 (445)
T PRK12422 220 TQEEFFHTFNSLHTE-G--KLIVISSTCAPQDLKAMEERLIS--RFEWGIAIPLHPLTKEGLRSFLERKAEAL 287 (445)
T ss_pred hHHHHHHHHHHHHHC-C--CcEEEecCCCHHHHhhhHHHHHh--hhcCCeEEecCCCCHHHHHHHHHHHHHHc
Confidence 333444444444322 2 345555554 4 357899998 885 899999999999999998876543
No 157
>PRK11331 5-methylcytosine-specific restriction enzyme subunit McrB; Provisional
Probab=98.80 E-value=4e-08 Score=100.92 Aligned_cols=106 Identities=18% Similarity=0.228 Sum_probs=63.3
Q ss_pred CceeEEeCCCCCcHHHHHHHHHHHcCCC-------eEEeccc----C----c--C------ChHHHHHHHHHhhhc----
Q 035603 227 KRGYLLFGPPGTGKSTMIAAMANCLNYD-------VYDLELT----S----V--E------NNNELRSLLVDISSK---- 279 (431)
Q Consensus 227 ~rg~LL~GPPGtGKTsla~aiA~~l~~~-------i~~l~~~----~----~--~------~~~~l~~l~~~~~~~---- 279 (431)
++.++|+||||||||++|+++|..++.. .+.+... + . . ....+.+++..+...
T Consensus 194 ~~~iil~GppGtGKT~lA~~la~~l~~~~~~~~v~~VtFHpsySYeDFI~G~rP~~vgy~~~~G~f~~~~~~A~~~p~~~ 273 (459)
T PRK11331 194 KKNIILQGPPGVGKTFVARRLAYLLTGEKAPQRVNMVQFHQSYSYEDFIQGYRPNGVGFRRKDGIFYNFCQQAKEQPEKK 273 (459)
T ss_pred CCCEEEECCCCCCHHHHHHHHHHHhcCCcccceeeEEeecccccHHHHhcccCCCCCCeEecCchHHHHHHHHHhcccCC
Confidence 5689999999999999999999988532 1111110 0 0 0 011223333333321
Q ss_pred ---------ccchhhHHHHHHHHhcCc--------c----------cCCCCceEEEEecCCCC----CCChhhhccCcee
Q 035603 280 ---------KKKSNVTLSGLLNCIGGL--------W----------STCGGERIIVFTTNHVD----KLDPALIRRGRMD 328 (431)
Q Consensus 280 ---------~~~~~~~~s~lL~~ldg~--------~----------~~~~~~~ivI~TTN~~~----~Ld~AllRpGRfd 328 (431)
.......+..++..|+.- . -.-..++.||+|+|..| .+|.||+| ||.
T Consensus 274 ~vliIDEINRani~kiFGel~~lLE~~~rg~~~~v~l~y~e~d~e~f~iP~Nl~IIgTMNt~Drs~~~lD~AlrR--RF~ 351 (459)
T PRK11331 274 YVFIIDEINRANLSKVFGEVMMLMEHDKRGENWSVPLTYSENDEERFYVPENVYIIGLMNTADRSLAVVDYALRR--RFS 351 (459)
T ss_pred cEEEEehhhccCHHHhhhhhhhhccccccccccceeeeccccccccccCCCCeEEEEecCccccchhhccHHHHh--hhh
Confidence 122234456666666521 0 01234689999999888 79999999 885
Q ss_pred EEEEcCC
Q 035603 329 KHIEMPY 335 (431)
Q Consensus 329 ~~I~~~~ 335 (431)
. |++.+
T Consensus 352 f-i~i~p 357 (459)
T PRK11331 352 F-IDIEP 357 (459)
T ss_pred e-EEecC
Confidence 4 55554
No 158
>PRK14086 dnaA chromosomal replication initiation protein; Provisional
Probab=98.80 E-value=7.4e-08 Score=102.50 Aligned_cols=182 Identities=14% Similarity=0.189 Sum_probs=100.5
Q ss_pred eccCCCCccccccChhhHHHHHHHHHHHHhCHHHHHHhCCCCCceeEEeCCCCCcHHHHHHHHHHHc-----CCCeEEec
Q 035603 185 YFEHPATFDTLAMASKKKEAIKKDLIKFTEGKEYYAKIGKAWKRGYLLFGPPGTGKSTMIAAMANCL-----NYDVYDLE 259 (431)
Q Consensus 185 ~~~~p~~f~~l~g~~~~k~~i~~~l~~~~~~~~~~~~~g~~~~rg~LL~GPPGtGKTsla~aiA~~l-----~~~i~~l~ 259 (431)
.+....+|++.+..+.-. .....+...... .+. +...++|||++|||||.|++|||+++ ++.++.++
T Consensus 280 ~L~~~~TFDnFvvG~sN~-~A~aaa~avae~------~~~-~~NpL~LyG~sGsGKTHLL~AIa~~a~~~~~g~~V~Yit 351 (617)
T PRK14086 280 RLNPKYTFDTFVIGASNR-FAHAAAVAVAEA------PAK-AYNPLFIYGESGLGKTHLLHAIGHYARRLYPGTRVRYVS 351 (617)
T ss_pred CCCCCCCHhhhcCCCccH-HHHHHHHHHHhC------ccc-cCCcEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEee
Confidence 344557899876544322 112222222221 122 23469999999999999999999986 46677776
Q ss_pred ccCcCCh--HHHH----HHHHHhhhc-----------ccchhhHHHHHHHHhcCcccCCCCceEEEEecCCC----CCCC
Q 035603 260 LTSVENN--NELR----SLLVDISSK-----------KKKSNVTLSGLLNCIGGLWSTCGGERIIVFTTNHV----DKLD 318 (431)
Q Consensus 260 ~~~~~~~--~~l~----~l~~~~~~~-----------~~~~~~~~s~lL~~ldg~~~~~~~~~ivI~TTN~~----~~Ld 318 (431)
+..+... ..+. ..|...... -.....+...|++.++.+... + .-||+|+|.+ ..++
T Consensus 352 aeef~~el~~al~~~~~~~f~~~y~~~DLLlIDDIq~l~gke~tqeeLF~l~N~l~e~-g--k~IIITSd~~P~eL~~l~ 428 (617)
T PRK14086 352 SEEFTNEFINSIRDGKGDSFRRRYREMDILLVDDIQFLEDKESTQEEFFHTFNTLHNA-N--KQIVLSSDRPPKQLVTLE 428 (617)
T ss_pred HHHHHHHHHHHHHhccHHHHHHHhhcCCEEEEehhccccCCHHHHHHHHHHHHHHHhc-C--CCEEEecCCChHhhhhcc
Confidence 6543210 0000 011111111 111122334555666555432 2 2344577654 3678
Q ss_pred hhhhccCce--eEEEEcCCCCHHHHHHHHHHhhchhcchhHHHH-HhHhccCCCCHHHHHHHhc
Q 035603 319 PALIRRGRM--DKHIEMPYCCFEAFKVLAKNYLEIESHELFHEI-GSLLGETDITPADVAENLM 379 (431)
Q Consensus 319 ~AllRpGRf--d~~I~~~~p~~~~r~~i~~~~l~~~~~~~~~~i-~~l~~~~~~s~adI~~~l~ 379 (431)
+.|.+ || -..+++..|+.+.|..|++.........+.+++ .-|+....=+..++..++.
T Consensus 429 ~rL~S--Rf~~GLvv~I~~PD~EtR~aIL~kka~~r~l~l~~eVi~yLa~r~~rnvR~LegaL~ 490 (617)
T PRK14086 429 DRLRN--RFEWGLITDVQPPELETRIAILRKKAVQEQLNAPPEVLEFIASRISRNIRELEGALI 490 (617)
T ss_pred HHHHh--hhhcCceEEcCCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHhccCCHHHHHHHHH
Confidence 99998 66 677899999999999999988754433333333 2333333334455554443
No 159
>PRK06964 DNA polymerase III subunit delta'; Validated
Probab=98.79 E-value=8.6e-08 Score=96.11 Aligned_cols=117 Identities=17% Similarity=0.197 Sum_probs=84.8
Q ss_pred CCCceeEEeCCCCCcHHHHHHHHHHHcCCC-------------------------eEEecccC-----------------
Q 035603 225 AWKRGYLLFGPPGTGKSTMIAAMANCLNYD-------------------------VYDLELTS----------------- 262 (431)
Q Consensus 225 ~~~rg~LL~GPPGtGKTsla~aiA~~l~~~-------------------------i~~l~~~~----------------- 262 (431)
..+.+|||+||+|+||+++|+++|..+.+. ++.+....
T Consensus 19 rl~ha~Lf~Gp~G~GK~~lA~~~A~~LlC~~~~~~~~~Cg~C~~C~~~~~~~HPD~~~i~p~~~~~~~~~~~~~~~~~~~ 98 (342)
T PRK06964 19 RLPHALLLHGQAGIGKLDFAQHLAQGLLCETPQPDGEPCGTCAACNWFAQGNHPDYRIVRPEALAAEAPGAADEAKEADA 98 (342)
T ss_pred CcceEEEEECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCCHHHHHHHcCCCCCEEEEecccccccccccccccccchh
Confidence 446799999999999999999999987652 22221110
Q ss_pred ------------cCChHHHHHHHHHhhhc--------------ccchhhHHHHHHHHhcCcccCCCCceEEEEecCCCCC
Q 035603 263 ------------VENNNELRSLLVDISSK--------------KKKSNVTLSGLLNCIGGLWSTCGGERIIVFTTNHVDK 316 (431)
Q Consensus 263 ------------~~~~~~l~~l~~~~~~~--------------~~~~~~~~s~lL~~ldg~~~~~~~~~ivI~TTN~~~~ 316 (431)
.-.-++++.+......+ +.-....-+.||..|+. +++++++|++|++++.
T Consensus 99 ~~~~~k~~~~~~~I~idqiR~l~~~~~~~~~~~~~kV~iI~~ae~m~~~AaNaLLKtLEE----Pp~~t~fiL~t~~~~~ 174 (342)
T PRK06964 99 DEGGKKTKAPSKEIKIEQVRALLDFCGVGTHRGGARVVVLYPAEALNVAAANALLKTLEE----PPPGTVFLLVSARIDR 174 (342)
T ss_pred hcccccccccccccCHHHHHHHHHHhccCCccCCceEEEEechhhcCHHHHHHHHHHhcC----CCcCcEEEEEECChhh
Confidence 01224566655443322 33345677999999994 4566999999999999
Q ss_pred CChhhhccCceeEEEEcCCCCHHHHHHHHHHh
Q 035603 317 LDPALIRRGRMDKHIEMPYCCFEAFKVLAKNY 348 (431)
Q Consensus 317 Ld~AllRpGRfd~~I~~~~p~~~~r~~i~~~~ 348 (431)
|.|.+++ |. ..|.|++|+.++..+.+...
T Consensus 175 LLpTI~S--Rc-q~i~~~~~~~~~~~~~L~~~ 203 (342)
T PRK06964 175 LLPTILS--RC-RQFPMTVPAPEAAAAWLAAQ 203 (342)
T ss_pred CcHHHHh--cC-EEEEecCCCHHHHHHHHHHc
Confidence 9999998 55 68999999998888777653
No 160
>TIGR02442 Cob-chelat-sub cobaltochelatase subunit. A number of genomes (actinobacteria, cyanobacteria, betaproteobacteria and pseudomonads) which apparently biosynthesize B12, encode a cobN gene but are demonstrably lacking cobS and cobT. These genomes do, however contain a homolog (modelled here) of the magnesium chelatase subunits BchI/BchD family. Aside from the cyanobacteria (which have a separate magnesium chelatase trimer), these species do not make chlorins, so do not have any use for a magnesium chelatase. Furthermore, in nearly all cases the members of this family are proximal to either CobN itself or other genes involved in cobalt transport or B12 biosynthesis.
Probab=98.72 E-value=9.5e-08 Score=103.72 Aligned_cols=143 Identities=17% Similarity=0.150 Sum_probs=91.1
Q ss_pred CccccccChhhHHHHHHHHHHHHhCHHHHHHhCCCCCceeEEeCCCCCcHHHHHHHHHHHcC------------------
Q 035603 191 TFDTLAMASKKKEAIKKDLIKFTEGKEYYAKIGKAWKRGYLLFGPPGTGKSTMIAAMANCLN------------------ 252 (431)
Q Consensus 191 ~f~~l~g~~~~k~~i~~~l~~~~~~~~~~~~~g~~~~rg~LL~GPPGtGKTsla~aiA~~l~------------------ 252 (431)
+|..|+|++.+|..+.-.+. .+ .-.|+||+||||||||++|++|+..+.
T Consensus 2 pf~~ivGq~~~~~al~~~av----~~---------~~g~vli~G~~GtgKs~lar~l~~~lp~~~~~~~~~~~c~p~~~~ 68 (633)
T TIGR02442 2 PFTAIVGQEDLKLALLLNAV----DP---------RIGGVLIRGEKGTAKSTAARGLAALLPPIDVVAGCPFSCDPDDPE 68 (633)
T ss_pred CcchhcChHHHHHHHHHHhh----CC---------CCCeEEEEcCCCCcHHHHHHHHHHhCCCceeccCCcCCCCCCCcc
Confidence 47899999988876643222 11 124799999999999999999999882
Q ss_pred -----------------CCeEEecccCc----CChHHHHHHHHHhh------------hc-------ccchhhHHHHHHH
Q 035603 253 -----------------YDVYDLELTSV----ENNNELRSLLVDIS------------SK-------KKKSNVTLSGLLN 292 (431)
Q Consensus 253 -----------------~~i~~l~~~~~----~~~~~l~~l~~~~~------------~~-------~~~~~~~~s~lL~ 292 (431)
.+|+.+.++.. -+..++...+.... .. +.......+.||+
T Consensus 69 ~~~~~~~~~~~~~~~~~~pfv~~p~~~t~~~l~G~~d~~~~l~~g~~~~~~G~L~~A~~GiL~lDEi~~l~~~~q~~Ll~ 148 (633)
T TIGR02442 69 EWCEECRRKYRPSEQRPVPFVNLPLGATEDRVVGSLDIERALREGEKAFQPGLLAEAHRGILYIDEVNLLDDHLVDVLLD 148 (633)
T ss_pred ccChhhhhcccccccCCCCeeeCCCCCcHHHcCCcccHHHHhhcCCeeecCcceeecCCCeEEeChhhhCCHHHHHHHHH
Confidence 34554433321 01111222221110 00 2344567788888
Q ss_pred HhcCc---------ccCCCCceEEEEecCCC-CCCChhhhccCceeEEEEcCCCC-HHHHHHHHHHh
Q 035603 293 CIGGL---------WSTCGGERIIVFTTNHV-DKLDPALIRRGRMDKHIEMPYCC-FEAFKVLAKNY 348 (431)
Q Consensus 293 ~ldg~---------~~~~~~~~ivI~TTN~~-~~Ld~AllRpGRfd~~I~~~~p~-~~~r~~i~~~~ 348 (431)
.|+.- .......+++|+|+|.. ..|.++|+. ||+++|.++++. .+++.++++..
T Consensus 149 ~le~g~~~v~r~g~~~~~~~~~~lIat~np~eg~l~~~L~d--R~~l~i~v~~~~~~~~~~~il~~~ 213 (633)
T TIGR02442 149 AAAMGVNRVEREGLSVSHPARFVLIGTMNPEEGDLRPQLLD--RFGLCVDVAAPRDPEERVEIIRRR 213 (633)
T ss_pred HHhcCCEEEEECCceeeecCCeEEEEecCCCCCCCCHHHHh--hcceEEEccCCCchHHHHHHHHHH
Confidence 88521 11112347889999964 368999999 999999999985 56677776653
No 161
>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication. DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.
Probab=98.71 E-value=2.5e-07 Score=87.39 Aligned_cols=155 Identities=20% Similarity=0.244 Sum_probs=81.9
Q ss_pred CCCccccccChhhHHHHHHHHHHHHhCHHHHHHhCCCCCceeEEeCCCCCcHHHHHHHHHHHc-----CCCeEEecccCc
Q 035603 189 PATFDTLAMASKKKEAIKKDLIKFTEGKEYYAKIGKAWKRGYLLFGPPGTGKSTMIAAMANCL-----NYDVYDLELTSV 263 (431)
Q Consensus 189 p~~f~~l~g~~~~k~~i~~~l~~~~~~~~~~~~~g~~~~rg~LL~GPPGtGKTsla~aiA~~l-----~~~i~~l~~~~~ 263 (431)
.-||++.+-.+.-+.. ...+......+ |. .-..++||||+|+|||.|.+|+++++ +..++.++....
T Consensus 4 ~~tFdnfv~g~~N~~a-~~~~~~ia~~~------~~-~~~~l~l~G~~G~GKTHLL~Ai~~~~~~~~~~~~v~y~~~~~f 75 (219)
T PF00308_consen 4 KYTFDNFVVGESNELA-YAAAKAIAENP------GE-RYNPLFLYGPSGLGKTHLLQAIANEAQKQHPGKRVVYLSAEEF 75 (219)
T ss_dssp T-SCCCS--TTTTHHH-HHHHHHHHHST------TT-SSSEEEEEESTTSSHHHHHHHHHHHHHHHCTTS-EEEEEHHHH
T ss_pred CCccccCCcCCcHHHH-HHHHHHHHhcC------CC-CCCceEEECCCCCCHHHHHHHHHHHHHhccccccceeecHHHH
Confidence 3678887543332222 23333333332 22 22468999999999999999999874 456666665443
Q ss_pred CCh-------HHHHHHHHHhhhc----------ccchhhHHHHHHHHhcCcccCCCCceEEEEecCCCCC---CChhhhc
Q 035603 264 ENN-------NELRSLLVDISSK----------KKKSNVTLSGLLNCIGGLWSTCGGERIIVFTTNHVDK---LDPALIR 323 (431)
Q Consensus 264 ~~~-------~~l~~l~~~~~~~----------~~~~~~~~s~lL~~ldg~~~~~~~~~ivI~TTN~~~~---Ld~AllR 323 (431)
... ..+.++....... -.....+...|.+.++.+... +..+||.+...|.. ++|.|..
T Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~~DlL~iDDi~~l~~~~~~q~~lf~l~n~~~~~--~k~li~ts~~~P~~l~~~~~~L~S 153 (219)
T PF00308_consen 76 IREFADALRDGEIEEFKDRLRSADLLIIDDIQFLAGKQRTQEELFHLFNRLIES--GKQLILTSDRPPSELSGLLPDLRS 153 (219)
T ss_dssp HHHHHHHHHTTSHHHHHHHHCTSSEEEEETGGGGTTHHHHHHHHHHHHHHHHHT--TSEEEEEESS-TTTTTTS-HHHHH
T ss_pred HHHHHHHHHcccchhhhhhhhcCCEEEEecchhhcCchHHHHHHHHHHHHHHhh--CCeEEEEeCCCCccccccChhhhh
Confidence 100 0111111111111 112233455666666665433 23555555556554 5688877
Q ss_pred cCce--eEEEEcCCCCHHHHHHHHHHhhchhcch
Q 035603 324 RGRM--DKHIEMPYCCFEAFKVLAKNYLEIESHE 355 (431)
Q Consensus 324 pGRf--d~~I~~~~p~~~~r~~i~~~~l~~~~~~ 355 (431)
|| -..+.+..|+.+.|..+++.........
T Consensus 154 --Rl~~Gl~~~l~~pd~~~r~~il~~~a~~~~~~ 185 (219)
T PF00308_consen 154 --RLSWGLVVELQPPDDEDRRRILQKKAKERGIE 185 (219)
T ss_dssp --HHHCSEEEEE----HHHHHHHHHHHHHHTT--
T ss_pred --hHhhcchhhcCCCCHHHHHHHHHHHHHHhCCC
Confidence 55 3589999999999999999887644333
No 162
>PRK13531 regulatory ATPase RavA; Provisional
Probab=98.70 E-value=1.6e-07 Score=97.22 Aligned_cols=118 Identities=20% Similarity=0.233 Sum_probs=72.9
Q ss_pred CceeEEeCCCCCcHHHHHHHHHHHcCC--CeEEecccCcCChHHH------HHH-----HHH-hhh---c---------c
Q 035603 227 KRGYLLFGPPGTGKSTMIAAMANCLNY--DVYDLELTSVENNNEL------RSL-----LVD-ISS---K---------K 280 (431)
Q Consensus 227 ~rg~LL~GPPGtGKTsla~aiA~~l~~--~i~~l~~~~~~~~~~l------~~l-----~~~-~~~---~---------~ 280 (431)
...+||+||||||||++|++||..++. +|..+..... +..++ ... |.. ..+ . .
T Consensus 39 g~hVLL~GpPGTGKT~LAraLa~~~~~~~~F~~~~~~ft-tp~DLfG~l~i~~~~~~g~f~r~~~G~L~~A~lLfLDEI~ 117 (498)
T PRK13531 39 GESVFLLGPPGIAKSLIARRLKFAFQNARAFEYLMTRFS-TPEEVFGPLSIQALKDEGRYQRLTSGYLPEAEIVFLDEIW 117 (498)
T ss_pred CCCEEEECCCChhHHHHHHHHHHHhcccCcceeeeeeec-CcHHhcCcHHHhhhhhcCchhhhcCCccccccEEeecccc
Confidence 468999999999999999999997653 2332222210 11111 111 100 000 0 4
Q ss_pred cchhhHHHHHHHHhc-CcccCCC-----CceEEEEecCCCC---CCChhhhccCceeEEEEcCCCC-HHHHHHHHHH
Q 035603 281 KKSNVTLSGLLNCIG-GLWSTCG-----GERIIVFTTNHVD---KLDPALIRRGRMDKHIEMPYCC-FEAFKVLAKN 347 (431)
Q Consensus 281 ~~~~~~~s~lL~~ld-g~~~~~~-----~~~ivI~TTN~~~---~Ld~AllRpGRfd~~I~~~~p~-~~~r~~i~~~ 347 (431)
..+..+.+.||..|. +.....+ ..+++++|||... ...+|+.. ||-++|.+|+|+ .+..+.|+..
T Consensus 118 rasp~~QsaLLeam~Er~~t~g~~~~~lp~rfiv~ATN~LPE~g~~leAL~D--RFliri~vp~l~~~~~e~~lL~~ 192 (498)
T PRK13531 118 KAGPAILNTLLTAINERRFRNGAHEEKIPMRLLVTASNELPEADSSLEALYD--RMLIRLWLDKVQDKANFRSMLTS 192 (498)
T ss_pred cCCHHHHHHHHHHHHhCeEecCCeEEeCCCcEEEEECCCCcccCCchHHhHh--hEEEEEECCCCCchHHHHHHHHc
Confidence 456778899999993 3221111 2357777788432 23359999 999999999997 5666777765
No 163
>PF07724 AAA_2: AAA domain (Cdc48 subfamily); InterPro: IPR013093 ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of ATPase AAA-2 domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. Some of these ATPases function as a chaperone subunit of a proteasome-like degradation complex. This ATPase family includes some proteins not detected by IPR003959 from INTERPRO.; GO: 0005524 ATP binding; PDB: 1R6B_X 1KSF_X 3PXI_C 1KYI_T 1G3I_S 1OFH_B 1OFI_A 1G41_A 1IM2_A 1HQY_E ....
Probab=98.70 E-value=1.6e-08 Score=91.82 Aligned_cols=88 Identities=24% Similarity=0.352 Sum_probs=63.0
Q ss_pred ceeEEeCCCCCcHHHHHHHHHHHcCC----CeEEecccCcCC----hHHHHHHHHHhhhc--------------ccchh-
Q 035603 228 RGYLLFGPPGTGKSTMIAAMANCLNY----DVYDLELTSVEN----NNELRSLLVDISSK--------------KKKSN- 284 (431)
Q Consensus 228 rg~LL~GPPGtGKTsla~aiA~~l~~----~i~~l~~~~~~~----~~~l~~l~~~~~~~--------------~~~~~- 284 (431)
..+||.||+|||||.+|+++|..+.. +++.+|++.+.. ...+..++...... +....
T Consensus 4 ~~~ll~GpsGvGKT~la~~la~~l~~~~~~~~~~~d~s~~~~~~~~~~~~~~l~~~~~~~v~~~~~gVVllDEidKa~~~ 83 (171)
T PF07724_consen 4 SNFLLAGPSGVGKTELAKALAELLFVGSERPLIRIDMSEYSEGDDVESSVSKLLGSPPGYVGAEEGGVVLLDEIDKAHPS 83 (171)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHHHT-SSCCEEEEEEGGGHCSHHHCSCHCHHHHHHTTCHHHHHHHTEEEEETGGGCSHT
T ss_pred EEEEEECCCCCCHHHHHHHHHHHhccCCccchHHHhhhcccccchHHhhhhhhhhcccceeeccchhhhhhHHHhhcccc
Confidence 46899999999999999999999996 999999999876 33445554433222 33444
Q ss_pred ----------hHHHHHHHHhcCcccC--CC-----CceEEEEecCCCC
Q 035603 285 ----------VTLSGLLNCIGGLWST--CG-----GERIIVFTTNHVD 315 (431)
Q Consensus 285 ----------~~~s~lL~~ldg~~~~--~~-----~~~ivI~TTN~~~ 315 (431)
...+.||..||+-.-. .+ .+.++|+|+|--.
T Consensus 84 ~~~~~~v~~~~V~~~LL~~le~g~~~d~~g~~vd~~n~ifI~Tsn~~~ 131 (171)
T PF07724_consen 84 NSGGADVSGEGVQNSLLQLLEGGTLTDSYGRTVDTSNIIFIMTSNFGA 131 (171)
T ss_dssp TTTCSHHHHHHHHHHHHHHHHHSEEEETTCCEEEGTTEEEEEEESSST
T ss_pred ccccchhhHHHHHHHHHHHhcccceecccceEEEeCCceEEEeccccc
Confidence 6778899988753221 11 3579999999653
No 164
>PF06068 TIP49: TIP49 C-terminus; InterPro: IPR010339 This family consists of the C-terminal region of several eukaryotic and archaeal RuvB-like 1 (Pontin or TIP49a) and RuvB-like 2 (Reptin or TIP49b) proteins. The N-terminal domain contains the AAA ATPase, central region IPR003959 from INTERPRO domain. In zebrafish, the liebeskummer (lik) mutation, causes development of hyperplastic embryonic hearts. lik encodes Reptin, a component of a DNA-stimulated ATPase complex. Beta-catenin and Pontin, a DNA-stimulated ATPase that is often part of complexes with Reptin, are in the same genetic pathways. The Reptin/Pontin ratio serves to regulate heart growth during development, at least in part via the beta-catenin pathway []. TBP-interacting protein 49 (TIP49) was originally identified as a TBP-binding protein, and two related proteins are encoded by individual genes, tip49a and b. Although the function of this gene family has not been elucidated, they are supposed to play a critical role in nuclear events because they interact with various kinds of nuclear factors and have DNA helicase activities. TIP49a has been suggested to act as an autoantigen in some patients with autoimmune diseases [].; GO: 0003678 DNA helicase activity, 0005524 ATP binding; PDB: 2XSZ_E 2CQA_A 2C9O_C.
Probab=98.70 E-value=4.6e-07 Score=90.34 Aligned_cols=65 Identities=29% Similarity=0.424 Sum_probs=47.2
Q ss_pred ccccccChhhHHHHHHHHHHHHhCHHHHHHhCCCCCceeEEeCCCCCcHHHHHHHHHHHcC--CCeEEecccCcC
Q 035603 192 FDTLAMASKKKEAIKKDLIKFTEGKEYYAKIGKAWKRGYLLFGPPGTGKSTMIAAMANCLN--YDVYDLELTSVE 264 (431)
Q Consensus 192 f~~l~g~~~~k~~i~~~l~~~~~~~~~~~~~g~~~~rg~LL~GPPGtGKTsla~aiA~~l~--~~i~~l~~~~~~ 264 (431)
.+.++|+.+.++..-= +...++. |.--.|++||.||||||||.||-+||++|| .||+.++.+++.
T Consensus 23 ~~GlVGQ~~AReAagi-iv~mIk~-------~K~aGr~iLiaGppGtGKTAlA~~ia~eLG~~~PF~~isgSEiy 89 (398)
T PF06068_consen 23 ADGLVGQEKAREAAGI-IVDMIKE-------GKIAGRAILIAGPPGTGKTALAMAIAKELGEDVPFVSISGSEIY 89 (398)
T ss_dssp ETTEES-HHHHHHHHH-HHHHHHT-------T--TT-EEEEEE-TTSSHHHHHHHHHHHCTTTS-EEEEEGGGG-
T ss_pred cccccChHHHHHHHHH-HHHHHhc-------ccccCcEEEEeCCCCCCchHHHHHHHHHhCCCCCeeEcccceee
Confidence 4789999999888643 3333332 334578999999999999999999999998 789999988874
No 165
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=98.69 E-value=7.5e-08 Score=81.70 Aligned_cols=37 Identities=32% Similarity=0.517 Sum_probs=31.7
Q ss_pred CceeEEeCCCCCcHHHHHHHHHHHcCCC---eEEecccCc
Q 035603 227 KRGYLLFGPPGTGKSTMIAAMANCLNYD---VYDLELTSV 263 (431)
Q Consensus 227 ~rg~LL~GPPGtGKTsla~aiA~~l~~~---i~~l~~~~~ 263 (431)
+..++|+||||||||++++++|..+... ++.++....
T Consensus 2 ~~~~~l~G~~G~GKTtl~~~l~~~~~~~~~~~~~~~~~~~ 41 (148)
T smart00382 2 GEVILIVGPPGSGKTTLARALARELGPPGGGVIYIDGEDI 41 (148)
T ss_pred CCEEEEECCCCCcHHHHHHHHHhccCCCCCCEEEECCEEc
Confidence 4579999999999999999999999886 777776643
No 166
>PF03215 Rad17: Rad17 cell cycle checkpoint protein
Probab=98.69 E-value=2.3e-07 Score=97.95 Aligned_cols=70 Identities=34% Similarity=0.508 Sum_probs=56.4
Q ss_pred CcceeeeccCCCCccccccChhhHHHHHHHHHHHHhCHHHHHHhCCCCCceeEEeCCCCCcHHHHHHHHHHHcCCCeEEe
Q 035603 179 KKWSHVYFEHPATFDTLAMASKKKEAIKKDLIKFTEGKEYYAKIGKAWKRGYLLFGPPGTGKSTMIAAMANCLNYDVYDL 258 (431)
Q Consensus 179 ~~w~~~~~~~p~~f~~l~g~~~~k~~i~~~l~~~~~~~~~~~~~g~~~~rg~LL~GPPGtGKTsla~aiA~~l~~~i~~l 258 (431)
..|. ..-.|.+.++|+...+..+++..++...+. +....+-+||+||||||||++++++|+++|+.+.+.
T Consensus 7 ~~W~--~ky~P~~~~eLavhkkKv~eV~~wl~~~~~--------~~~~~~iLlLtGP~G~GKtttv~~La~elg~~v~Ew 76 (519)
T PF03215_consen 7 EPWV--EKYAPKTLDELAVHKKKVEEVRSWLEEMFS--------GSSPKRILLLTGPSGCGKTTTVKVLAKELGFEVQEW 76 (519)
T ss_pred Cccc--hhcCCCCHHHhhccHHHHHHHHHHHHHHhc--------cCCCcceEEEECCCCCCHHHHHHHHHHHhCCeeEEe
Confidence 4675 667899999999998877777776664432 334456788999999999999999999999998875
No 167
>PRK14087 dnaA chromosomal replication initiation protein; Provisional
Probab=98.68 E-value=2e-07 Score=97.17 Aligned_cols=177 Identities=14% Similarity=0.219 Sum_probs=98.7
Q ss_pred CCCccccccChhhHHHHHHHHHHHHhCHHHHHHhCCCCCceeEEeCCCCCcHHHHHHHHHHHc-----CCCeEEecccCc
Q 035603 189 PATFDTLAMASKKKEAIKKDLIKFTEGKEYYAKIGKAWKRGYLLFGPPGTGKSTMIAAMANCL-----NYDVYDLELTSV 263 (431)
Q Consensus 189 p~~f~~l~g~~~~k~~i~~~l~~~~~~~~~~~~~g~~~~rg~LL~GPPGtGKTsla~aiA~~l-----~~~i~~l~~~~~ 263 (431)
+.+|++.+..+.- +.....+..+...+ |.. ..+++||||+|||||+|++|+++++ +..++.++..++
T Consensus 111 ~~tFdnFv~g~~n-~~A~~aa~~~a~~~------~~~-~npl~i~G~~G~GKTHLl~Ai~~~l~~~~~~~~v~yv~~~~f 182 (450)
T PRK14087 111 ENTFENFVIGSSN-EQAFIAVQTVSKNP------GIS-YNPLFIYGESGMGKTHLLKAAKNYIESNFSDLKVSYMSGDEF 182 (450)
T ss_pred ccchhcccCCCcH-HHHHHHHHHHHhCc------Ccc-cCceEEECCCCCcHHHHHHHHHHHHHHhCCCCeEEEEEHHHH
Confidence 4688886644332 22334444443322 322 2579999999999999999999965 356666665543
Q ss_pred CCh---------HHHHHHHHHhhhc-----c-----cchhhHHHHHHHHhcCcccCCCCceEEEEecCC-CC---CCChh
Q 035603 264 ENN---------NELRSLLVDISSK-----K-----KKSNVTLSGLLNCIGGLWSTCGGERIIVFTTNH-VD---KLDPA 320 (431)
Q Consensus 264 ~~~---------~~l~~l~~~~~~~-----~-----~~~~~~~s~lL~~ldg~~~~~~~~~ivI~TTN~-~~---~Ld~A 320 (431)
... ..+..+....... + .....+...|...++.+... + .-+|+|+|. |+ .+++.
T Consensus 183 ~~~~~~~l~~~~~~~~~~~~~~~~~dvLiIDDiq~l~~k~~~~e~lf~l~N~~~~~-~--k~iIltsd~~P~~l~~l~~r 259 (450)
T PRK14087 183 ARKAVDILQKTHKEIEQFKNEICQNDVLIIDDVQFLSYKEKTNEIFFTIFNNFIEN-D--KQLFFSSDKSPELLNGFDNR 259 (450)
T ss_pred HHHHHHHHHHhhhHHHHHHHHhccCCEEEEeccccccCCHHHHHHHHHHHHHHHHc-C--CcEEEECCCCHHHHhhccHH
Confidence 110 1111111111111 1 11123444555555544332 2 245666654 33 46788
Q ss_pred hhccCce--eEEEEcCCCCHHHHHHHHHHhhchhcc--hh-HHHHHhHhccCCCCHHHHHHHh
Q 035603 321 LIRRGRM--DKHIEMPYCCFEAFKVLAKNYLEIESH--EL-FHEIGSLLGETDITPADVAENL 378 (431)
Q Consensus 321 llRpGRf--d~~I~~~~p~~~~r~~i~~~~l~~~~~--~~-~~~i~~l~~~~~~s~adI~~~l 378 (431)
|.. || ...+.+..|+.+.+.+++++.+..... .+ .+.+.-++...+=++..+.++|
T Consensus 260 L~S--R~~~Gl~~~L~~pd~e~r~~iL~~~~~~~gl~~~l~~evl~~Ia~~~~gd~R~L~gaL 320 (450)
T PRK14087 260 LIT--RFNMGLSIAIQKLDNKTATAIIKKEIKNQNIKQEVTEEAINFISNYYSDDVRKIKGSV 320 (450)
T ss_pred HHH--HHhCCceeccCCcCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHccCCCHHHHHHHH
Confidence 888 66 478899999999999999988764321 12 2233444444444555555554
No 168
>PRK09087 hypothetical protein; Validated
Probab=98.67 E-value=1.1e-07 Score=90.17 Aligned_cols=117 Identities=12% Similarity=0.117 Sum_probs=68.8
Q ss_pred ceeEEeCCCCCcHHHHHHHHHHHcCCCeEEecccCcCChHHHHHHHHHhhhcccc--hhhHHHHHHHHhcCcccCCCCce
Q 035603 228 RGYLLFGPPGTGKSTMIAAMANCLNYDVYDLELTSVENNNELRSLLVDISSKKKK--SNVTLSGLLNCIGGLWSTCGGER 305 (431)
Q Consensus 228 rg~LL~GPPGtGKTsla~aiA~~l~~~i~~l~~~~~~~~~~l~~l~~~~~~~~~~--~~~~~s~lL~~ldg~~~~~~~~~ 305 (431)
+.++|+||+|+|||+|+++++...+..++... ... .+.+..+....---+.. ...+-.+|.+.++.+... +..
T Consensus 45 ~~l~l~G~~GsGKThLl~~~~~~~~~~~i~~~--~~~-~~~~~~~~~~~l~iDDi~~~~~~~~~lf~l~n~~~~~--g~~ 119 (226)
T PRK09087 45 PVVVLAGPVGSGKTHLASIWREKSDALLIHPN--EIG-SDAANAAAEGPVLIEDIDAGGFDETGLFHLINSVRQA--GTS 119 (226)
T ss_pred CeEEEECCCCCCHHHHHHHHHHhcCCEEecHH--Hcc-hHHHHhhhcCeEEEECCCCCCCCHHHHHHHHHHHHhC--CCe
Confidence 45899999999999999999998776554432 211 11111111000000000 001123355555544322 224
Q ss_pred EEEEecCCCCC---CChhhhccCcee--EEEEcCCCCHHHHHHHHHHhhch
Q 035603 306 IIVFTTNHVDK---LDPALIRRGRMD--KHIEMPYCCFEAFKVLAKNYLEI 351 (431)
Q Consensus 306 ivI~TTN~~~~---Ld~AllRpGRfd--~~I~~~~p~~~~r~~i~~~~l~~ 351 (431)
+||.++..|.. ..|.|+. |+. ..+++..|+.+.+..+++.....
T Consensus 120 ilits~~~p~~~~~~~~dL~S--Rl~~gl~~~l~~pd~e~~~~iL~~~~~~ 168 (226)
T PRK09087 120 LLMTSRLWPSSWNVKLPDLKS--RLKAATVVEIGEPDDALLSQVIFKLFAD 168 (226)
T ss_pred EEEECCCChHHhccccccHHH--HHhCCceeecCCCCHHHHHHHHHHHHHH
Confidence 55555444432 3688887 775 88999999999999999988754
No 169
>COG1224 TIP49 DNA helicase TIP49, TBP-interacting protein [Transcription]
Probab=98.66 E-value=8.3e-07 Score=87.46 Aligned_cols=64 Identities=30% Similarity=0.465 Sum_probs=49.0
Q ss_pred cccccChhhHHHHHHHHHHHHhCHHHHHHhCCCCCceeEEeCCCCCcHHHHHHHHHHHcC--CCeEEecccCcC
Q 035603 193 DTLAMASKKKEAIKKDLIKFTEGKEYYAKIGKAWKRGYLLFGPPGTGKSTMIAAMANCLN--YDVYDLELTSVE 264 (431)
Q Consensus 193 ~~l~g~~~~k~~i~~~l~~~~~~~~~~~~~g~~~~rg~LL~GPPGtGKTsla~aiA~~l~--~~i~~l~~~~~~ 264 (431)
+.++|+.+.++.-= -+...++ -|.-..||+|+.||||||||-||-+||++|| .||+.++.+++.
T Consensus 39 dG~VGQ~~AReAaG-vIv~mik-------~gk~aGrgiLi~GppgTGKTAlA~gIa~eLG~dvPF~~isgsEiY 104 (450)
T COG1224 39 DGLVGQEEAREAAG-VIVKMIK-------QGKMAGRGILIVGPPGTGKTALAMGIARELGEDVPFVAISGSEIY 104 (450)
T ss_pred CcccchHHHHHhhh-HHHHHHH-------hCcccccEEEEECCCCCcHHHHHHHHHHHhCCCCCceeeccceee
Confidence 56788888877632 2222222 2556689999999999999999999999998 578888888774
No 170
>PF13177 DNA_pol3_delta2: DNA polymerase III, delta subunit; PDB: 1NJF_B 3GLG_G 1XXH_I 1NJG_A 3GLF_B 3GLI_G 1IQP_E 2GNO_A 1SXJ_E 1A5T_A ....
Probab=98.65 E-value=5.1e-07 Score=81.25 Aligned_cols=103 Identities=21% Similarity=0.301 Sum_probs=70.6
Q ss_pred CCceeEEeCCCCCcHHHHHHHHHHHcCC-----------------------CeEEecccCc---CChHHHHHHHHHhhhc
Q 035603 226 WKRGYLLFGPPGTGKSTMIAAMANCLNY-----------------------DVYDLELTSV---ENNNELRSLLVDISSK 279 (431)
Q Consensus 226 ~~rg~LL~GPPGtGKTsla~aiA~~l~~-----------------------~i~~l~~~~~---~~~~~l~~l~~~~~~~ 279 (431)
.+..|||+||+|+||+++|.++|+.+-. +++.++.... -..+.++++.......
T Consensus 18 l~ha~L~~G~~g~gk~~~a~~~a~~ll~~~~~~~~c~~c~~c~~~~~~~~~d~~~~~~~~~~~~i~i~~ir~i~~~~~~~ 97 (162)
T PF13177_consen 18 LPHALLFHGPSGSGKKTLALAFARALLCSNPNEDPCGECRSCRRIEEGNHPDFIIIKPDKKKKSIKIDQIREIIEFLSLS 97 (162)
T ss_dssp --SEEEEECSTTSSHHHHHHHHHHHHC-TT-CTT--SSSHHHHHHHTT-CTTEEEEETTTSSSSBSHHHHHHHHHHCTSS
T ss_pred cceeEEEECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCHHHHHHHhccCcceEEEecccccchhhHHHHHHHHHHHHHH
Confidence 4568999999999999999999986532 3444444432 2346677766554433
Q ss_pred --------------ccchhhHHHHHHHHhcCcccCCCCceEEEEecCCCCCCChhhhccCceeEEEEcCC
Q 035603 280 --------------KKKSNVTLSGLLNCIGGLWSTCGGERIIVFTTNHVDKLDPALIRRGRMDKHIEMPY 335 (431)
Q Consensus 280 --------------~~~~~~~~s~lL~~ldg~~~~~~~~~ivI~TTN~~~~Ld~AllRpGRfd~~I~~~~ 335 (431)
+.-.....+.||..|+. +++.+++|++|+.++.|.|.++. |. ..|.|+.
T Consensus 98 ~~~~~~KviiI~~ad~l~~~a~NaLLK~LEe----pp~~~~fiL~t~~~~~il~TI~S--Rc-~~i~~~~ 160 (162)
T PF13177_consen 98 PSEGKYKVIIIDEADKLTEEAQNALLKTLEE----PPENTYFILITNNPSKILPTIRS--RC-QVIRFRP 160 (162)
T ss_dssp -TTSSSEEEEEETGGGS-HHHHHHHHHHHHS----TTTTEEEEEEES-GGGS-HHHHT--TS-EEEEE--
T ss_pred HhcCCceEEEeehHhhhhHHHHHHHHHHhcC----CCCCEEEEEEECChHHChHHHHh--hc-eEEecCC
Confidence 44566788999999995 45669999999999999999998 43 4566554
No 171
>PRK06871 DNA polymerase III subunit delta'; Validated
Probab=98.64 E-value=2e-06 Score=85.69 Aligned_cols=115 Identities=15% Similarity=0.138 Sum_probs=83.8
Q ss_pred CceeEEeCCCCCcHHHHHHHHHHHcCC------------------------CeEEecccC--cCChHHHHHHHHHhhhc-
Q 035603 227 KRGYLLFGPPGTGKSTMIAAMANCLNY------------------------DVYDLELTS--VENNNELRSLLVDISSK- 279 (431)
Q Consensus 227 ~rg~LL~GPPGtGKTsla~aiA~~l~~------------------------~i~~l~~~~--~~~~~~l~~l~~~~~~~- 279 (431)
+.+|||+||+|+||+++|+++|..+-+ +++.+.... .-..+.++++.......
T Consensus 24 ~HA~Lf~G~~G~GK~~lA~~~A~~llC~~~~~~~~Cg~C~sC~~~~~g~HPD~~~i~p~~~~~I~id~iR~l~~~~~~~~ 103 (325)
T PRK06871 24 HHALLFKADSGLGTEQLIRALAQWLMCQTPQGDQPCGQCHSCHLFQAGNHPDFHILEPIDNKDIGVDQVREINEKVSQHA 103 (325)
T ss_pred ceeEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHhcCCCCCEEEEccccCCCCCHHHHHHHHHHHhhcc
Confidence 459999999999999999999998754 233333211 11345677665443322
Q ss_pred -------------ccchhhHHHHHHHHhcCcccCCCCceEEEEecCCCCCCChhhhccCceeEEEEcCCCCHHHHHHHHH
Q 035603 280 -------------KKKSNVTLSGLLNCIGGLWSTCGGERIIVFTTNHVDKLDPALIRRGRMDKHIEMPYCCFEAFKVLAK 346 (431)
Q Consensus 280 -------------~~~~~~~~s~lL~~ldg~~~~~~~~~ivI~TTN~~~~Ld~AllRpGRfd~~I~~~~p~~~~r~~i~~ 346 (431)
+.-.....+.||..|+. +++.+++|.+|++++.|.|.+++ |. ..+.|++|+.++..+.+.
T Consensus 104 ~~g~~KV~iI~~a~~m~~~AaNaLLKtLEE----Pp~~~~fiL~t~~~~~llpTI~S--RC-~~~~~~~~~~~~~~~~L~ 176 (325)
T PRK06871 104 QQGGNKVVYIQGAERLTEAAANALLKTLEE----PRPNTYFLLQADLSAALLPTIYS--RC-QTWLIHPPEEQQALDWLQ 176 (325)
T ss_pred ccCCceEEEEechhhhCHHHHHHHHHHhcC----CCCCeEEEEEECChHhCchHHHh--hc-eEEeCCCCCHHHHHHHHH
Confidence 33456678899999984 45669999999999999999998 44 678999999888776665
Q ss_pred Hh
Q 035603 347 NY 348 (431)
Q Consensus 347 ~~ 348 (431)
..
T Consensus 177 ~~ 178 (325)
T PRK06871 177 AQ 178 (325)
T ss_pred HH
Confidence 53
No 172
>COG1474 CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones]
Probab=98.64 E-value=1.5e-06 Score=88.12 Aligned_cols=141 Identities=19% Similarity=0.271 Sum_probs=93.6
Q ss_pred cccChhhHHHHHHHHHHHHhCHHHHHHhCCCCCceeEEeCCCCCcHHHHHHHHHHHcCCC-----eEEecccCcCChHHH
Q 035603 195 LAMASKKKEAIKKDLIKFTEGKEYYAKIGKAWKRGYLLFGPPGTGKSTMIAAMANCLNYD-----VYDLELTSVENNNEL 269 (431)
Q Consensus 195 l~g~~~~k~~i~~~l~~~~~~~~~~~~~g~~~~rg~LL~GPPGtGKTsla~aiA~~l~~~-----i~~l~~~~~~~~~~l 269 (431)
+.+-++..+++...+..++.+. .|..+++|||||||||.+++-++.++.-. ++.+||....+...+
T Consensus 19 l~~Re~ei~~l~~~l~~~~~~~---------~p~n~~iyG~~GTGKT~~~~~v~~~l~~~~~~~~~~yINc~~~~t~~~i 89 (366)
T COG1474 19 LPHREEEINQLASFLAPALRGE---------RPSNIIIYGPTGTGKTATVKFVMEELEESSANVEVVYINCLELRTPYQV 89 (366)
T ss_pred ccccHHHHHHHHHHHHHHhcCC---------CCccEEEECCCCCCHhHHHHHHHHHHHhhhccCceEEEeeeeCCCHHHH
Confidence 6777777888777766665531 23359999999999999999999988654 788999887655443
Q ss_pred -HHHHHHh---hhc--------------------------c------cchhhHHHHHHHHhcCcccCCCCceEEEEecCC
Q 035603 270 -RSLLVDI---SSK--------------------------K------KKSNVTLSGLLNCIGGLWSTCGGERIIVFTTNH 313 (431)
Q Consensus 270 -~~l~~~~---~~~--------------------------~------~~~~~~~s~lL~~ldg~~~~~~~~~ivI~TTN~ 313 (431)
.+++... +.. + ......+-.|+..-+.. ...+.+|+.+|.
T Consensus 90 ~~~i~~~~~~~p~~g~~~~~~~~~l~~~~~~~~~~~IvvLDEid~L~~~~~~~LY~L~r~~~~~----~~~v~vi~i~n~ 165 (366)
T COG1474 90 LSKILNKLGKVPLTGDSSLEILKRLYDNLSKKGKTVIVILDEVDALVDKDGEVLYSLLRAPGEN----KVKVSIIAVSND 165 (366)
T ss_pred HHHHHHHcCCCCCCCCchHHHHHHHHHHHHhcCCeEEEEEcchhhhccccchHHHHHHhhcccc----ceeEEEEEEecc
Confidence 2333211 110 0 01112333333332222 345789999986
Q ss_pred C---CCCChhhhccCce-eEEEEcCCCCHHHHHHHHHHhhc
Q 035603 314 V---DKLDPALIRRGRM-DKHIEMPYCCFEAFKVLAKNYLE 350 (431)
Q Consensus 314 ~---~~Ld~AllRpGRf-d~~I~~~~p~~~~r~~i~~~~l~ 350 (431)
. +.|||-+.+ ++ ..+|.||+.+.++...|++....
T Consensus 166 ~~~~~~ld~rv~s--~l~~~~I~F~pY~a~el~~Il~~R~~ 204 (366)
T COG1474 166 DKFLDYLDPRVKS--SLGPSEIVFPPYTAEELYDILRERVE 204 (366)
T ss_pred HHHHHHhhhhhhh--ccCcceeeeCCCCHHHHHHHHHHHHH
Confidence 6 578898876 43 45599999999999999887764
No 173
>TIGR00602 rad24 checkpoint protein rad24. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=98.61 E-value=6.4e-07 Score=96.42 Aligned_cols=69 Identities=33% Similarity=0.403 Sum_probs=53.3
Q ss_pred CcceeeeccCCCCccccccChhhHHHHHHHHHHHHhCHHHHHHhCCCCCceeEEeCCCCCcHHHHHHHHHHHcCCCeEE
Q 035603 179 KKWSHVYFEHPATFDTLAMASKKKEAIKKDLIKFTEGKEYYAKIGKAWKRGYLLFGPPGTGKSTMIAAMANCLNYDVYD 257 (431)
Q Consensus 179 ~~w~~~~~~~p~~f~~l~g~~~~k~~i~~~l~~~~~~~~~~~~~g~~~~rg~LL~GPPGtGKTsla~aiA~~l~~~i~~ 257 (431)
..|. ..-.|.++++|++.++..+.+...+.... .+....+.++|+||||||||++++++|++++.+++.
T Consensus 72 ~pW~--eKyrP~~ldel~~~~~ki~~l~~~l~~~~--------~~~~~~~illL~GP~GsGKTTl~~~la~~l~~~~~E 140 (637)
T TIGR00602 72 EPWV--EKYKPETQHELAVHKKKIEEVETWLKAQV--------LENAPKRILLITGPSGCGKSTTIKILSKELGIQVQE 140 (637)
T ss_pred CchH--HHhCCCCHHHhcCcHHHHHHHHHHHHhcc--------cccCCCcEEEEECCCCCCHHHHHHHHHHHhhhHHHH
Confidence 4575 66789999999999988887665543321 123344569999999999999999999999987654
No 174
>PRK07993 DNA polymerase III subunit delta'; Validated
Probab=98.60 E-value=1.9e-06 Score=86.40 Aligned_cols=115 Identities=14% Similarity=0.119 Sum_probs=83.8
Q ss_pred CCceeEEeCCCCCcHHHHHHHHHHHcCC------------------------CeEEecccC---cCChHHHHHHHHHhhh
Q 035603 226 WKRGYLLFGPPGTGKSTMIAAMANCLNY------------------------DVYDLELTS---VENNNELRSLLVDISS 278 (431)
Q Consensus 226 ~~rg~LL~GPPGtGKTsla~aiA~~l~~------------------------~i~~l~~~~---~~~~~~l~~l~~~~~~ 278 (431)
.+.+|||+||+|+||+++|.++|..+-+ +++.+.... .-..+.++++......
T Consensus 23 l~HA~Lf~G~~G~Gk~~lA~~~A~~LlC~~~~~~~~Cg~C~sC~~~~~g~HPD~~~i~p~~~~~~I~idqiR~l~~~~~~ 102 (334)
T PRK07993 23 GHHALLIQALPGMGDDALIYALSRWLMCQQPQGHKSCGHCRGCQLMQAGTHPDYYTLTPEKGKSSLGVDAVREVTEKLYE 102 (334)
T ss_pred cceEEeeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCCCCEEEEecccccccCCHHHHHHHHHHHhh
Confidence 3458999999999999999999998744 233332221 1134567766554433
Q ss_pred c--------------ccchhhHHHHHHHHhcCcccCCCCceEEEEecCCCCCCChhhhccCceeEEEEcCCCCHHHHHHH
Q 035603 279 K--------------KKKSNVTLSGLLNCIGGLWSTCGGERIIVFTTNHVDKLDPALIRRGRMDKHIEMPYCCFEAFKVL 344 (431)
Q Consensus 279 ~--------------~~~~~~~~s~lL~~ldg~~~~~~~~~ivI~TTN~~~~Ld~AllRpGRfd~~I~~~~p~~~~r~~i 344 (431)
+ +.-....-+.||..|+. +++..++|.+|++++.|.|.+++ |.. .+.|+.|+.++..+.
T Consensus 103 ~~~~g~~kV~iI~~ae~m~~~AaNaLLKtLEE----Pp~~t~fiL~t~~~~~lLpTIrS--RCq-~~~~~~~~~~~~~~~ 175 (334)
T PRK07993 103 HARLGGAKVVWLPDAALLTDAAANALLKTLEE----PPENTWFFLACREPARLLATLRS--RCR-LHYLAPPPEQYALTW 175 (334)
T ss_pred ccccCCceEEEEcchHhhCHHHHHHHHHHhcC----CCCCeEEEEEECChhhChHHHHh--ccc-cccCCCCCHHHHHHH
Confidence 2 33345678899999984 55679999999999999999998 553 689999998887776
Q ss_pred HHH
Q 035603 345 AKN 347 (431)
Q Consensus 345 ~~~ 347 (431)
+..
T Consensus 176 L~~ 178 (334)
T PRK07993 176 LSR 178 (334)
T ss_pred HHH
Confidence 644
No 175
>PRK07952 DNA replication protein DnaC; Validated
Probab=98.59 E-value=1.6e-07 Score=89.91 Aligned_cols=96 Identities=18% Similarity=0.285 Sum_probs=60.6
Q ss_pred HHHHHHHHhhccceeeccCCccccCCcceeeeccCCCCccccccChhhHHHHHHHHHHHHhCHHHHHHhCCCCCceeEEe
Q 035603 154 EGKAIAVRNRQRKLYKNVPCQAWYEKKWSHVYFEHPATFDTLAMASKKKEAIKKDLIKFTEGKEYYAKIGKAWKRGYLLF 233 (431)
Q Consensus 154 ~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~p~~f~~l~g~~~~k~~i~~~l~~~~~~~~~~~~~g~~~~rg~LL~ 233 (431)
.+.++..++++.+++.... .|.-.+..++.+|++.....+-.+.+...+..+...- . ....+++|+
T Consensus 40 ~~~~i~~~~~q~~~~~~~~-------~s~i~~~~~~~tFdnf~~~~~~q~~al~~a~~~~~~~---~----~~~~~~~l~ 105 (244)
T PRK07952 40 RSAALERENRAMKMQRTFN-------RSGIRPLHQNCSFENYRVECEGQMNALSKARQYVEEF---D----GNIASFIFS 105 (244)
T ss_pred HHHHHHHHHHHHHHHHHHH-------HcCCCccccCCccccccCCCchHHHHHHHHHHHHHhh---c----cCCceEEEE
Confidence 3445555556655544321 1111234456889998766544445556666665421 1 113589999
Q ss_pred CCCCCcHHHHHHHHHHHc---CCCeEEecccCc
Q 035603 234 GPPGTGKSTMIAAMANCL---NYDVYDLELTSV 263 (431)
Q Consensus 234 GPPGtGKTsla~aiA~~l---~~~i~~l~~~~~ 263 (431)
||||||||+|+.|||+++ |..++.++..++
T Consensus 106 G~~GtGKThLa~aia~~l~~~g~~v~~it~~~l 138 (244)
T PRK07952 106 GKPGTGKNHLAAAICNELLLRGKSVLIITVADI 138 (244)
T ss_pred CCCCCCHHHHHHHHHHHHHhcCCeEEEEEHHHH
Confidence 999999999999999988 667777765544
No 176
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=98.57 E-value=4.8e-07 Score=84.46 Aligned_cols=125 Identities=17% Similarity=0.257 Sum_probs=76.7
Q ss_pred cceeeeccCCCCccccccChhhHHHHHHHHHHHHhCHHHHHHhCCCCCceeEEeCCCCCcHHHHHHHHHHHc-C----CC
Q 035603 180 KWSHVYFEHPATFDTLAMASKKKEAIKKDLIKFTEGKEYYAKIGKAWKRGYLLFGPPGTGKSTMIAAMANCL-N----YD 254 (431)
Q Consensus 180 ~w~~~~~~~p~~f~~l~g~~~~k~~i~~~l~~~~~~~~~~~~~g~~~~rg~LL~GPPGtGKTsla~aiA~~l-~----~~ 254 (431)
.|. ....|.-+++|+|.++..+.+.- +.. -|=- ..+++.||||||||+-+.++|++| | --
T Consensus 16 ~wV--eKYrP~~l~dIVGNe~tv~rl~v----ia~-------~gnm--P~liisGpPG~GKTTsi~~LAr~LLG~~~ke~ 80 (333)
T KOG0991|consen 16 PWV--EKYRPSVLQDIVGNEDTVERLSV----IAK-------EGNM--PNLIISGPPGTGKTTSILCLARELLGDSYKEA 80 (333)
T ss_pred hHH--HhhCchHHHHhhCCHHHHHHHHH----HHH-------cCCC--CceEeeCCCCCchhhHHHHHHHHHhChhhhhH
Confidence 364 67789999999999988776532 221 1211 269999999999999999999976 3 23
Q ss_pred eEEecccCcCChHHHHHH---HHHhhhc-----------cc---chhhHHHHHHHHhcCcccCCCCceEEEEecCCCCCC
Q 035603 255 VYDLELTSVENNNELRSL---LVDISSK-----------KK---KSNVTLSGLLNCIGGLWSTCGGERIIVFTTNHVDKL 317 (431)
Q Consensus 255 i~~l~~~~~~~~~~l~~l---~~~~~~~-----------~~---~~~~~~s~lL~~ldg~~~~~~~~~ivI~TTN~~~~L 317 (431)
+.++|.++-.+-+-++.- |.+..-. +. ........|-..|+-..+ ..-+..++|..+++
T Consensus 81 vLELNASdeRGIDvVRn~IK~FAQ~kv~lp~grhKIiILDEADSMT~gAQQAlRRtMEiyS~----ttRFalaCN~s~KI 156 (333)
T KOG0991|consen 81 VLELNASDERGIDVVRNKIKMFAQKKVTLPPGRHKIIILDEADSMTAGAQQALRRTMEIYSN----TTRFALACNQSEKI 156 (333)
T ss_pred hhhccCccccccHHHHHHHHHHHHhhccCCCCceeEEEeeccchhhhHHHHHHHHHHHHHcc----cchhhhhhcchhhh
Confidence 667888876666656543 3222111 11 112222333334442222 23466778887777
Q ss_pred Chhhhc
Q 035603 318 DPALIR 323 (431)
Q Consensus 318 d~AllR 323 (431)
-..+..
T Consensus 157 iEPIQS 162 (333)
T KOG0991|consen 157 IEPIQS 162 (333)
T ss_pred hhhHHh
Confidence 666655
No 177
>PRK08769 DNA polymerase III subunit delta'; Validated
Probab=98.56 E-value=3.3e-06 Score=84.00 Aligned_cols=115 Identities=15% Similarity=0.187 Sum_probs=80.7
Q ss_pred CCceeEEeCCCCCcHHHHHHHHHHHcCC---------------------CeEEec--ccCcC-------ChHHHHHHHHH
Q 035603 226 WKRGYLLFGPPGTGKSTMIAAMANCLNY---------------------DVYDLE--LTSVE-------NNNELRSLLVD 275 (431)
Q Consensus 226 ~~rg~LL~GPPGtGKTsla~aiA~~l~~---------------------~i~~l~--~~~~~-------~~~~l~~l~~~ 275 (431)
.+.++||+||+|+||+++|.++|..+-+ +++.++ ...-. .-+.++++...
T Consensus 25 l~HA~Lf~Gp~G~GK~~lA~~lA~~LlC~~~~~~~~c~~c~~~~~g~HPD~~~i~~~p~~~~~k~~~~I~idqIR~l~~~ 104 (319)
T PRK08769 25 LGHGLLICGPEGLGKRAVALALAEHVLASGPDPAAAQRTRQLIAAGTHPDLQLVSFIPNRTGDKLRTEIVIEQVREISQK 104 (319)
T ss_pred cceeEeeECCCCCCHHHHHHHHHHHHhCCCCCCCCcchHHHHHhcCCCCCEEEEecCCCcccccccccccHHHHHHHHHH
Confidence 3458999999999999999999987643 233331 11100 13455655543
Q ss_pred hhhc--------------ccchhhHHHHHHHHhcCcccCCCCceEEEEecCCCCCCChhhhccCceeEEEEcCCCCHHHH
Q 035603 276 ISSK--------------KKKSNVTLSGLLNCIGGLWSTCGGERIIVFTTNHVDKLDPALIRRGRMDKHIEMPYCCFEAF 341 (431)
Q Consensus 276 ~~~~--------------~~~~~~~~s~lL~~ldg~~~~~~~~~ivI~TTN~~~~Ld~AllRpGRfd~~I~~~~p~~~~r 341 (431)
.... +.-.....+.||..|+. +.+++++|.+|++++.|.|.+++ |. ..|.|+.|+.++.
T Consensus 105 ~~~~p~~g~~kV~iI~~ae~m~~~AaNaLLKtLEE----Pp~~~~fiL~~~~~~~lLpTIrS--RC-q~i~~~~~~~~~~ 177 (319)
T PRK08769 105 LALTPQYGIAQVVIVDPADAINRAACNALLKTLEE----PSPGRYLWLISAQPARLPATIRS--RC-QRLEFKLPPAHEA 177 (319)
T ss_pred HhhCcccCCcEEEEeccHhhhCHHHHHHHHHHhhC----CCCCCeEEEEECChhhCchHHHh--hh-eEeeCCCcCHHHH
Confidence 3322 33345678889999884 45568999999999999999998 44 5789999998877
Q ss_pred HHHHHH
Q 035603 342 KVLAKN 347 (431)
Q Consensus 342 ~~i~~~ 347 (431)
.+.+..
T Consensus 178 ~~~L~~ 183 (319)
T PRK08769 178 LAWLLA 183 (319)
T ss_pred HHHHHH
Confidence 766654
No 178
>smart00350 MCM minichromosome maintenance proteins.
Probab=98.55 E-value=2.5e-07 Score=98.06 Aligned_cols=119 Identities=19% Similarity=0.239 Sum_probs=75.8
Q ss_pred eeEEeCCCCCcHHHHHHHHHHHcCCCeEEe----cccCcCChHHHHHH-----------HHHhhhc-------ccchhhH
Q 035603 229 GYLLFGPPGTGKSTMIAAMANCLNYDVYDL----ELTSVENNNELRSL-----------LVDISSK-------KKKSNVT 286 (431)
Q Consensus 229 g~LL~GPPGtGKTsla~aiA~~l~~~i~~l----~~~~~~~~~~l~~l-----------~~~~~~~-------~~~~~~~ 286 (431)
.+||+|+||||||++++++++.+....+.. +...+.. ..++.- +..+.+. +......
T Consensus 238 ~vLL~G~pGtGKs~lar~l~~~~~r~~~~~~~~~~~~~l~~-~~~~~~~~g~~~~~~G~l~~A~~Gil~iDEi~~l~~~~ 316 (509)
T smart00350 238 NILLLGDPGTAKSQLLKYVEKTAPRAVYTTGKGSSAVGLTA-AVTRDPETREFTLEGGALVLADNGVCCIDEFDKMDDSD 316 (509)
T ss_pred eEEEeCCCChhHHHHHHHHHHHcCcceEcCCCCCCcCCccc-cceEccCcceEEecCccEEecCCCEEEEechhhCCHHH
Confidence 599999999999999999999876544432 1111110 111110 0011111 2234456
Q ss_pred HHHHHHHhcCc---------ccCCCCceEEEEecCCCC-------------CCChhhhccCceeEEEE-cCCCCHHHHHH
Q 035603 287 LSGLLNCIGGL---------WSTCGGERIIVFTTNHVD-------------KLDPALIRRGRMDKHIE-MPYCCFEAFKV 343 (431)
Q Consensus 287 ~s~lL~~ldg~---------~~~~~~~~ivI~TTN~~~-------------~Ld~AllRpGRfd~~I~-~~~p~~~~r~~ 343 (431)
.+.|+..|+.- ...-....-||+|+|..+ .|++++++ |||.... +++|+.+....
T Consensus 317 q~~L~e~me~~~i~i~k~G~~~~l~~~~~viAa~NP~~g~y~~~~~~~~n~~l~~~lLs--RFdLi~~~~d~~~~~~d~~ 394 (509)
T smart00350 317 RTAIHEAMEQQTISIAKAGITTTLNARCSVLAAANPIGGRYDPKLTPEENIDLPAPILS--RFDLLFVVLDEVDEERDRE 394 (509)
T ss_pred HHHHHHHHhcCEEEEEeCCEEEEecCCcEEEEEeCCCCcccCCCcChhhccCCChHHhC--ceeeEEEecCCCChHHHHH
Confidence 67777777432 111223467999999763 59999999 9998655 58899999999
Q ss_pred HHHHhhc
Q 035603 344 LAKNYLE 350 (431)
Q Consensus 344 i~~~~l~ 350 (431)
|+++.+.
T Consensus 395 i~~~i~~ 401 (509)
T smart00350 395 LAKHVVD 401 (509)
T ss_pred HHHHHHH
Confidence 9887653
No 179
>PRK08699 DNA polymerase III subunit delta'; Validated
Probab=98.54 E-value=8.1e-07 Score=88.78 Aligned_cols=115 Identities=17% Similarity=0.261 Sum_probs=81.8
Q ss_pred CCceeEEeCCCCCcHHHHHHHHHHHcCC-------------------------CeEEecccCc----------CChHHHH
Q 035603 226 WKRGYLLFGPPGTGKSTMIAAMANCLNY-------------------------DVYDLELTSV----------ENNNELR 270 (431)
Q Consensus 226 ~~rg~LL~GPPGtGKTsla~aiA~~l~~-------------------------~i~~l~~~~~----------~~~~~l~ 270 (431)
.+.+|||+||+|+|||++|+++|+.+.+ +++.++...- -.-+.++
T Consensus 20 ~~hA~Lf~G~~G~GK~~la~~~a~~llC~~~~~~~~~Cg~C~~C~~~~~~~HpD~~~~~p~~~~~~~g~~~~~I~id~iR 99 (325)
T PRK08699 20 RPNAWLFAGKKGIGKTAFARFAAQALLCETPAPGHKPCGECMSCHLFGQGSHPDFYEITPLSDEPENGRKLLQIKIDAVR 99 (325)
T ss_pred cceEEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCcCHHHHHHhcCCCCCEEEEecccccccccccCCCcCHHHHH
Confidence 4568999999999999999999998643 3455554210 1245677
Q ss_pred HHHHHhhhc--------------ccchhhHHHHHHHHhcCcccCCCCceEEEEecCCCCCCChhhhccCceeEEEEcCCC
Q 035603 271 SLLVDISSK--------------KKKSNVTLSGLLNCIGGLWSTCGGERIIVFTTNHVDKLDPALIRRGRMDKHIEMPYC 336 (431)
Q Consensus 271 ~l~~~~~~~--------------~~~~~~~~s~lL~~ldg~~~~~~~~~ivI~TTN~~~~Ld~AllRpGRfd~~I~~~~p 336 (431)
++....... +.-+....+.||..++... .+..+|++|++++.+.|.+.+ |. ..+.|++|
T Consensus 100 ~l~~~~~~~p~~~~~kV~iiEp~~~Ld~~a~naLLk~LEep~----~~~~~Ilvth~~~~ll~ti~S--Rc-~~~~~~~~ 172 (325)
T PRK08699 100 EIIDNVYLTSVRGGLRVILIHPAESMNLQAANSLLKVLEEPP----PQVVFLLVSHAADKVLPTIKS--RC-RKMVLPAP 172 (325)
T ss_pred HHHHHHhhCcccCCceEEEEechhhCCHHHHHHHHHHHHhCc----CCCEEEEEeCChHhChHHHHH--Hh-hhhcCCCC
Confidence 765544332 3334567788888888652 337788899999999999988 44 67889999
Q ss_pred CHHHHHHHHHH
Q 035603 337 CFEAFKVLAKN 347 (431)
Q Consensus 337 ~~~~r~~i~~~ 347 (431)
+.++..+.+..
T Consensus 173 ~~~~~~~~L~~ 183 (325)
T PRK08699 173 SHEEALAYLRE 183 (325)
T ss_pred CHHHHHHHHHh
Confidence 98887665543
No 180
>PRK04132 replication factor C small subunit; Provisional
Probab=98.53 E-value=1.2e-06 Score=96.70 Aligned_cols=112 Identities=13% Similarity=0.101 Sum_probs=87.7
Q ss_pred EEeC--CCCCcHHHHHHHHHHHc-----CCCeEEecccCcCChHHHHHHHHHhhhc----------------ccchhhHH
Q 035603 231 LLFG--PPGTGKSTMIAAMANCL-----NYDVYDLELTSVENNNELRSLLVDISSK----------------KKKSNVTL 287 (431)
Q Consensus 231 LL~G--PPGtGKTsla~aiA~~l-----~~~i~~l~~~~~~~~~~l~~l~~~~~~~----------------~~~~~~~~ 287 (431)
+..| |++.||||+|+|||+++ +.+++.+|+++..+.+.+++++...... +.-+....
T Consensus 568 ~~~G~lPh~lGKTT~A~ala~~l~g~~~~~~~lElNASd~rgid~IR~iIk~~a~~~~~~~~~~KVvIIDEaD~Lt~~AQ 647 (846)
T PRK04132 568 FIGGNLPTVLHNTTAALALARELFGENWRHNFLELNASDERGINVIREKVKEFARTKPIGGASFKIIFLDEADALTQDAQ 647 (846)
T ss_pred hhcCCCCCcccHHHHHHHHHHhhhcccccCeEEEEeCCCcccHHHHHHHHHHHHhcCCcCCCCCEEEEEECcccCCHHHH
Confidence 5568 99999999999999998 5689999999976777888877553321 33345577
Q ss_pred HHHHHHhcCcccCCCCceEEEEecCCCCCCChhhhccCceeEEEEcCCCCHHHHHHHHHHhh
Q 035603 288 SGLLNCIGGLWSTCGGERIIVFTTNHVDKLDPALIRRGRMDKHIEMPYCCFEAFKVLAKNYL 349 (431)
Q Consensus 288 s~lL~~ldg~~~~~~~~~ivI~TTN~~~~Ld~AllRpGRfd~~I~~~~p~~~~r~~i~~~~l 349 (431)
+.|+..|+.. .+.+.+|++||.+..+.++|++ |. ..+.|+.|+.++....++...
T Consensus 648 nALLk~lEep----~~~~~FILi~N~~~kIi~tIrS--RC-~~i~F~~ls~~~i~~~L~~I~ 702 (846)
T PRK04132 648 QALRRTMEMF----SSNVRFILSCNYSSKIIEPIQS--RC-AIFRFRPLRDEDIAKRLRYIA 702 (846)
T ss_pred HHHHHHhhCC----CCCeEEEEEeCChhhCchHHhh--hc-eEEeCCCCCHHHHHHHHHHHH
Confidence 8888888853 3458899999999999999998 54 688999999877776665543
No 181
>PRK06090 DNA polymerase III subunit delta'; Validated
Probab=98.53 E-value=1.2e-06 Score=87.21 Aligned_cols=115 Identities=12% Similarity=0.128 Sum_probs=83.3
Q ss_pred CCceeEEeCCCCCcHHHHHHHHHHHcCC-----------------------CeEEecccC---cCChHHHHHHHHHhhhc
Q 035603 226 WKRGYLLFGPPGTGKSTMIAAMANCLNY-----------------------DVYDLELTS---VENNNELRSLLVDISSK 279 (431)
Q Consensus 226 ~~rg~LL~GPPGtGKTsla~aiA~~l~~-----------------------~i~~l~~~~---~~~~~~l~~l~~~~~~~ 279 (431)
.+.+|||+||.|+||+++|+++|..+-+ +++.+.... .-..+.++.+.......
T Consensus 24 l~hA~L~~G~~G~Gk~~lA~~~a~~llC~~~~~~~Cg~C~sC~~~~~g~HPD~~~i~p~~~~~~I~vdqiR~l~~~~~~~ 103 (319)
T PRK06090 24 IPGALLLQSDEGLGVESLVELFSRALLCQNYQSEACGFCHSCELMQSGNHPDLHVIKPEKEGKSITVEQIRQCNRLAQES 103 (319)
T ss_pred cceeEeeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCHHHHHHHcCCCCCEEEEecCcCCCcCCHHHHHHHHHHHhhC
Confidence 3458999999999999999999987643 344443321 11345666654333221
Q ss_pred --------------ccchhhHHHHHHHHhcCcccCCCCceEEEEecCCCCCCChhhhccCceeEEEEcCCCCHHHHHHHH
Q 035603 280 --------------KKKSNVTLSGLLNCIGGLWSTCGGERIIVFTTNHVDKLDPALIRRGRMDKHIEMPYCCFEAFKVLA 345 (431)
Q Consensus 280 --------------~~~~~~~~s~lL~~ldg~~~~~~~~~ivI~TTN~~~~Ld~AllRpGRfd~~I~~~~p~~~~r~~i~ 345 (431)
+.-....-+.||..++. +++++++|++|++++.|.|.+++ |. ..+.|+.|+.++..+.+
T Consensus 104 ~~~~~~kV~iI~~ae~m~~~AaNaLLKtLEE----Pp~~t~fiL~t~~~~~lLpTI~S--RC-q~~~~~~~~~~~~~~~L 176 (319)
T PRK06090 104 SQLNGYRLFVIEPADAMNESASNALLKTLEE----PAPNCLFLLVTHNQKRLLPTIVS--RC-QQWVVTPPSTAQAMQWL 176 (319)
T ss_pred cccCCceEEEecchhhhCHHHHHHHHHHhcC----CCCCeEEEEEECChhhChHHHHh--cc-eeEeCCCCCHHHHHHHH
Confidence 33345678889999984 45669999999999999999998 44 58899999988877766
Q ss_pred HH
Q 035603 346 KN 347 (431)
Q Consensus 346 ~~ 347 (431)
..
T Consensus 177 ~~ 178 (319)
T PRK06090 177 KG 178 (319)
T ss_pred HH
Confidence 54
No 182
>TIGR00390 hslU ATP-dependent protease HslVU, ATPase subunit. This model represents the ATPase subunit of HslVU, while the proteasome-related peptidase subunit is HslV. Residues 54-61 of the model contain a P-loop ATP-binding motif. Cys-287 of E. coli (position 308 in the seed alignment), studied in PubMed:98389714, is Ser in other members of the seed alignment.
Probab=98.53 E-value=1.9e-07 Score=95.08 Aligned_cols=70 Identities=17% Similarity=0.259 Sum_probs=51.2
Q ss_pred ccccChhhHHHHHHHHHHHHhCHHHHHHhC-CCCCceeEEeCCCCCcHHHHHHHHHHHcCCCeEEecccCc
Q 035603 194 TLAMASKKKEAIKKDLIKFTEGKEYYAKIG-KAWKRGYLLFGPPGTGKSTMIAAMANCLNYDVYDLELTSV 263 (431)
Q Consensus 194 ~l~g~~~~k~~i~~~l~~~~~~~~~~~~~g-~~~~rg~LL~GPPGtGKTsla~aiA~~l~~~i~~l~~~~~ 263 (431)
-|+|+++.|+.+.-.+..-......-..++ -..|+++||+||||||||++|+++|..++.+++.++.+.+
T Consensus 13 ~IiGQ~eAkk~lsvAl~n~~~r~~~~~~~~~e~~p~~ILLiGppG~GKT~lAraLA~~l~~~fi~vdat~~ 83 (441)
T TIGR00390 13 YIIGQDNAKKSVAIALRNRYRRSQLNEELKDEVTPKNILMIGPTGVGKTEIARRLAKLANAPFIKVEATKF 83 (441)
T ss_pred hccCHHHHHHHHHHHHHhhhhhhccccccccccCCceEEEECCCCCCHHHHHHHHHHHhCCeEEEeeccee
Confidence 378999999998766654322211111111 1235899999999999999999999999999999997643
No 183
>PF01078 Mg_chelatase: Magnesium chelatase, subunit ChlI; InterPro: IPR000523 Magnesium-chelatase is a three-component enzyme that catalyses the insertion of Mg2+ into protoporphyrin IX. This is the first unique step in the synthesis of (bacterio)chlorophyll. As a result, it is thought that Mg-chelatase has an important role in channeling intermediates into the (bacterio)chlorophyll branch in response to conditions suitable for photosynthetic growth. ChlI and BchD have molecular weights between 38-42 kDa.; GO: 0016851 magnesium chelatase activity, 0015979 photosynthesis, 0015995 chlorophyll biosynthetic process; PDB: 2X31_J 1G8P_A 3K1J_B.
Probab=98.52 E-value=2e-07 Score=86.42 Aligned_cols=46 Identities=30% Similarity=0.544 Sum_probs=35.4
Q ss_pred ccccccChhhHHHHHHHHHHHHhCHHHHHHhCCCCCceeEEeCCCCCcHHHHHHHHHHHcC
Q 035603 192 FDTLAMASKKKEAIKKDLIKFTEGKEYYAKIGKAWKRGYLLFGPPGTGKSTMIAAMANCLN 252 (431)
Q Consensus 192 f~~l~g~~~~k~~i~~~l~~~~~~~~~~~~~g~~~~rg~LL~GPPGtGKTsla~aiA~~l~ 252 (431)
|.+|.|++..|..+.-... | ..++||+||||||||++|++++.-|.
T Consensus 2 f~dI~GQe~aKrAL~iAAa------------G---~h~lLl~GppGtGKTmlA~~l~~lLP 47 (206)
T PF01078_consen 2 FSDIVGQEEAKRALEIAAA------------G---GHHLLLIGPPGTGKTMLARRLPSLLP 47 (206)
T ss_dssp TCCSSSTHHHHHHHHHHHH------------C---C--EEEES-CCCTHHHHHHHHHHCS-
T ss_pred hhhhcCcHHHHHHHHHHHc------------C---CCCeEEECCCCCCHHHHHHHHHHhCC
Confidence 7899999999998854332 3 35899999999999999999998653
No 184
>PRK08116 hypothetical protein; Validated
Probab=98.51 E-value=7.5e-07 Score=86.73 Aligned_cols=139 Identities=18% Similarity=0.276 Sum_probs=78.0
Q ss_pred CCccccccChhhHHHHHHHHHHHHhCHHHHHHhCCCCCceeEEeCCCCCcHHHHHHHHHHHc---CCCeEEecccCcCC-
Q 035603 190 ATFDTLAMASKKKEAIKKDLIKFTEGKEYYAKIGKAWKRGYLLFGPPGTGKSTMIAAMANCL---NYDVYDLELTSVEN- 265 (431)
Q Consensus 190 ~~f~~l~g~~~~k~~i~~~l~~~~~~~~~~~~~g~~~~rg~LL~GPPGtGKTsla~aiA~~l---~~~i~~l~~~~~~~- 265 (431)
.+|++....++... ....+..+..+ |.... ...+|++|+||||||||.|+.|||+++ +.+++.++..++..
T Consensus 82 ~tFdnf~~~~~~~~-a~~~a~~y~~~---~~~~~-~~~~gl~l~G~~GtGKThLa~aia~~l~~~~~~v~~~~~~~ll~~ 156 (268)
T PRK08116 82 STFENFLFDKGSEK-AYKIARKYVKK---FEEMK-KENVGLLLWGSVGTGKTYLAACIANELIEKGVPVIFVNFPQLLNR 156 (268)
T ss_pred cchhcccCChHHHH-HHHHHHHHHHH---HHhhc-cCCceEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEEHHHHHHH
Confidence 45666654444322 33444444432 11111 234689999999999999999999986 67777777654310
Q ss_pred ---------hHHHHHHHHHhhhc----------ccchhhHHHHHHHHhcCcccCCCCceEEEEecCCC-C----CCChhh
Q 035603 266 ---------NNELRSLLVDISSK----------KKKSNVTLSGLLNCIGGLWSTCGGERIIVFTTNHV-D----KLDPAL 321 (431)
Q Consensus 266 ---------~~~l~~l~~~~~~~----------~~~~~~~~s~lL~~ldg~~~~~~~~~ivI~TTN~~-~----~Ld~Al 321 (431)
......++...... ...+......|.+.+|.... .+..+|+|||.+ + .+++.+
T Consensus 157 i~~~~~~~~~~~~~~~~~~l~~~dlLviDDlg~e~~t~~~~~~l~~iin~r~~---~~~~~IiTsN~~~~eL~~~~~~ri 233 (268)
T PRK08116 157 IKSTYKSSGKEDENEIIRSLVNADLLILDDLGAERDTEWAREKVYNIIDSRYR---KGLPTIVTTNLSLEELKNQYGKRI 233 (268)
T ss_pred HHHHHhccccccHHHHHHHhcCCCEEEEecccCCCCCHHHHHHHHHHHHHHHH---CCCCEEEECCCCHHHHHHHHhHHH
Confidence 00011111111111 22334556677777776532 225688888865 2 256677
Q ss_pred hccCce---eEEEEcCCCCH
Q 035603 322 IRRGRM---DKHIEMPYCCF 338 (431)
Q Consensus 322 lRpGRf---d~~I~~~~p~~ 338 (431)
.. |+ -..|.++-++.
T Consensus 234 ~s--Rl~e~~~~v~~~g~d~ 251 (268)
T PRK08116 234 YD--RILEMCTPVENEGKSY 251 (268)
T ss_pred HH--HHHHcCEEEEeeCcCh
Confidence 76 53 34566666664
No 185
>KOG0741 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=98.49 E-value=9.4e-07 Score=90.80 Aligned_cols=117 Identities=21% Similarity=0.290 Sum_probs=80.5
Q ss_pred CceeEEeCCCCCcHHHHHHHHHHHcCCCeEEec-ccC---cCC---hHHHHHHHHHhhhc--------------------
Q 035603 227 KRGYLLFGPPGTGKSTMIAAMANCLNYDVYDLE-LTS---VEN---NNELRSLLVDISSK-------------------- 279 (431)
Q Consensus 227 ~rg~LL~GPPGtGKTsla~aiA~~l~~~i~~l~-~~~---~~~---~~~l~~l~~~~~~~-------------------- 279 (431)
-.++||+||||+|||.||..||...++||+.+- ..+ +.. ...+.++|.++..+
T Consensus 538 lvSvLl~Gp~~sGKTaLAA~iA~~S~FPFvKiiSpe~miG~sEsaKc~~i~k~F~DAYkS~lsiivvDdiErLiD~vpIG 617 (744)
T KOG0741|consen 538 LVSVLLEGPPGSGKTALAAKIALSSDFPFVKIISPEDMIGLSESAKCAHIKKIFEDAYKSPLSIIVVDDIERLLDYVPIG 617 (744)
T ss_pred ceEEEEecCCCCChHHHHHHHHhhcCCCeEEEeChHHccCccHHHHHHHHHHHHHHhhcCcceEEEEcchhhhhcccccC
Confidence 357999999999999999999999999999763 222 221 23478888888766
Q ss_pred ccchhhHHHHHHHHhcCcccCCCCceEEEEecCCCCCCCh-hhhccCceeEEEEcCCCCH-HHHHHHHH
Q 035603 280 KKKSNVTLSGLLNCIGGLWSTCGGERIIVFTTNHVDKLDP-ALIRRGRMDKHIEMPYCCF-EAFKVLAK 346 (431)
Q Consensus 280 ~~~~~~~~s~lL~~ldg~~~~~~~~~ivI~TTN~~~~Ld~-AllRpGRfd~~I~~~~p~~-~~r~~i~~ 346 (431)
...++.++..|+-.+..... .|...+|++||...+-|.. .++. +|+..|++|..+. ++...++.
T Consensus 618 PRfSN~vlQaL~VllK~~pp-kg~kLli~~TTS~~~vL~~m~i~~--~F~~~i~Vpnl~~~~~~~~vl~ 683 (744)
T KOG0741|consen 618 PRFSNLVLQALLVLLKKQPP-KGRKLLIFGTTSRREVLQEMGILD--CFSSTIHVPNLTTGEQLLEVLE 683 (744)
T ss_pred chhhHHHHHHHHHHhccCCC-CCceEEEEecccHHHHHHHcCHHH--hhhheeecCccCchHHHHHHHH
Confidence 34566677777777776532 3334566667766544432 3445 7899999998765 45444443
No 186
>PRK11608 pspF phage shock protein operon transcriptional activator; Provisional
Probab=98.48 E-value=7.1e-06 Score=82.16 Aligned_cols=145 Identities=17% Similarity=0.178 Sum_probs=94.0
Q ss_pred ccccccChhhHHHHHHHHHHHHhCHHHHHHhCCCCCceeEEeCCCCCcHHHHHHHHHHHcC---CCeEEecccCcCChHH
Q 035603 192 FDTLAMASKKKEAIKKDLIKFTEGKEYYAKIGKAWKRGYLLFGPPGTGKSTMIAAMANCLN---YDVYDLELTSVENNNE 268 (431)
Q Consensus 192 f~~l~g~~~~k~~i~~~l~~~~~~~~~~~~~g~~~~rg~LL~GPPGtGKTsla~aiA~~l~---~~i~~l~~~~~~~~~~ 268 (431)
|++++|.....+.+.+.+...... ...+||+|+|||||+++|++|-.... .+|+.+||..+.. ..
T Consensus 5 ~~~liG~S~~~~~~~~~i~~~a~~-----------~~pVlI~GE~GtGK~~lA~~iH~~s~r~~~pfv~v~c~~~~~-~~ 72 (326)
T PRK11608 5 KDNLLGEANSFLEVLEQVSRLAPL-----------DKPVLIIGERGTGKELIASRLHYLSSRWQGPFISLNCAALNE-NL 72 (326)
T ss_pred cCccEECCHHHHHHHHHHHHHhCC-----------CCCEEEECCCCCcHHHHHHHHHHhCCccCCCeEEEeCCCCCH-HH
Confidence 677889888888888877766543 45799999999999999999976553 5899999998753 33
Q ss_pred HHH-HHHHhh------------------hc-------ccchhhHHHHHHHHhcCcc-cCCC------CceEEEEecCCC-
Q 035603 269 LRS-LLVDIS------------------SK-------KKKSNVTLSGLLNCIGGLW-STCG------GERIIVFTTNHV- 314 (431)
Q Consensus 269 l~~-l~~~~~------------------~~-------~~~~~~~~s~lL~~ldg~~-~~~~------~~~ivI~TTN~~- 314 (431)
+.. +|.... +. +.-+......|++.++.-. ...+ .++-||+||+..
T Consensus 73 ~~~~lfg~~~~~~~g~~~~~~g~l~~a~gGtL~l~~i~~L~~~~Q~~L~~~l~~~~~~~~g~~~~~~~~~RiI~~s~~~l 152 (326)
T PRK11608 73 LDSELFGHEAGAFTGAQKRHPGRFERADGGTLFLDELATAPMLVQEKLLRVIEYGELERVGGSQPLQVNVRLVCATNADL 152 (326)
T ss_pred HHHHHccccccccCCcccccCCchhccCCCeEEeCChhhCCHHHHHHHHHHHhcCcEEeCCCCceeeccEEEEEeCchhH
Confidence 333 332110 00 2223345567777775321 1111 135677777653
Q ss_pred ------CCCChhhhccCce-eEEEEcCCCC--HHHHHHHHHHhhc
Q 035603 315 ------DKLDPALIRRGRM-DKHIEMPYCC--FEAFKVLAKNYLE 350 (431)
Q Consensus 315 ------~~Ld~AllRpGRf-d~~I~~~~p~--~~~r~~i~~~~l~ 350 (431)
..+.+.|.. || ...|.+|+.. .+....|+.+|+.
T Consensus 153 ~~l~~~g~f~~dL~~--~l~~~~i~lPpLReR~eDI~~L~~~fl~ 195 (326)
T PRK11608 153 PAMVAEGKFRADLLD--RLAFDVVQLPPLRERQSDIMLMAEHFAI 195 (326)
T ss_pred HHHHHcCCchHHHHH--hcCCCEEECCChhhhhhhHHHHHHHHHH
Confidence 356677777 77 5578887764 3455667777764
No 187
>TIGR00764 lon_rel lon-related putative ATP-dependent protease. Members of this family from Pyrococcus horikoshii and Pyrococcus abyssi each contain a predicted intein.
Probab=98.44 E-value=6.8e-06 Score=88.75 Aligned_cols=50 Identities=38% Similarity=0.456 Sum_probs=40.9
Q ss_pred CCccccccChhhHHHHHHHHHHHHhCHHHHHHhCCCCCceeEEeCCCCCcHHHHHHHHHHHcCCC
Q 035603 190 ATFDTLAMASKKKEAIKKDLIKFTEGKEYYAKIGKAWKRGYLLFGPPGTGKSTMIAAMANCLNYD 254 (431)
Q Consensus 190 ~~f~~l~g~~~~k~~i~~~l~~~~~~~~~~~~~g~~~~rg~LL~GPPGtGKTsla~aiA~~l~~~ 254 (431)
.-+++++|.++.++.+...+. .++.++|+||||||||++++++|+.++.+
T Consensus 15 ~~~~~viG~~~a~~~l~~a~~---------------~~~~~ll~G~pG~GKT~la~~la~~l~~~ 64 (608)
T TIGR00764 15 RLIDQVIGQEEAVEIIKKAAK---------------QKRNVLLIGEPGVGKSMLAKAMAELLPDE 64 (608)
T ss_pred hhHhhccCHHHHHHHHHHHHH---------------cCCCEEEECCCCCCHHHHHHHHHHHcCch
Confidence 568899999988877655442 13489999999999999999999999765
No 188
>PRK05201 hslU ATP-dependent protease ATP-binding subunit HslU; Provisional
Probab=98.44 E-value=3.6e-07 Score=93.11 Aligned_cols=83 Identities=18% Similarity=0.232 Sum_probs=57.7
Q ss_pred ccccChhhHHHHHHHHHHHHhCHHHHHHhCCC-CCceeEEeCCCCCcHHHHHHHHHHHcCCCeEEecccCcC-------C
Q 035603 194 TLAMASKKKEAIKKDLIKFTEGKEYYAKIGKA-WKRGYLLFGPPGTGKSTMIAAMANCLNYDVYDLELTSVE-------N 265 (431)
Q Consensus 194 ~l~g~~~~k~~i~~~l~~~~~~~~~~~~~g~~-~~rg~LL~GPPGtGKTsla~aiA~~l~~~i~~l~~~~~~-------~ 265 (431)
.|+|+++.|+.+...+.........-.....+ .+.++||+||||||||++|++||..++.+++.++++.+. +
T Consensus 16 ~IiGQe~AkkalavAl~~~~~r~~l~~~~~~e~~~~~ILliGp~G~GKT~LAr~LAk~l~~~fi~vD~t~f~e~GyvG~d 95 (443)
T PRK05201 16 YIIGQDDAKRAVAIALRNRWRRMQLPEELRDEVTPKNILMIGPTGVGKTEIARRLAKLANAPFIKVEATKFTEVGYVGRD 95 (443)
T ss_pred ccCCHHHHHHHHHHHHHHHHHHhcCCcccccccCCceEEEECCCCCCHHHHHHHHHHHhCChheeecchhhccCCcccCC
Confidence 38999999999877664322211000001111 257899999999999999999999999999999986442 1
Q ss_pred -hHHHHHHHHHh
Q 035603 266 -NNELRSLLVDI 276 (431)
Q Consensus 266 -~~~l~~l~~~~ 276 (431)
...++.++..+
T Consensus 96 ~e~~ir~L~~~A 107 (443)
T PRK05201 96 VESIIRDLVEIA 107 (443)
T ss_pred HHHHHHHHHHHH
Confidence 34566666665
No 189
>PF08740 BCS1_N: BCS1 N terminal; InterPro: IPR014851 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. This domain is found at the N terminus of the mitochondrial BSC1 subfamily, belonging to the AAA ATPase family. At2g21640 and BCS1 are both highly stress responsive genes which encode mitochondrial proteins. The promoter of BCS1 was not responsive to H2O2 or rotenone, but highly responsive to salicylic acid (SA). The SA dependent pathway represented by BCS1 is one of at least three distinctive pathways to regulate mitochondrial stress response at a transcriptional level []. The BCS1 product is a mitochondrial protein required for the assembly of respiratory complex III []. BCS1, a component of the inner membrane of mitochondria, belongs to the group of proteins with internal, noncleavable import signals. It has a transmembrane domain (amino acid residues 51 to 68), a presequence type helix (residues 69 to 83), and an import auxiliary region (residues 84 to 126) [].
Probab=98.43 E-value=4.8e-06 Score=76.51 Aligned_cols=121 Identities=18% Similarity=0.337 Sum_probs=78.5
Q ss_pred cchhHHHHHHHhcCCCCCCCCccceEecCC-----------Cce------------e---eeecCeEEEEEEee-----c
Q 035603 64 RNKAYSEIQSYLSGREETSLHASRFKADDY-----------EEV------------S---DEYKGVRVWWVLGK-----K 112 (431)
Q Consensus 64 ~~~~y~~~~~yls~~~~~~~~~~~l~~~~~-----------~~~------------~---d~f~g~~~~w~~~~-----~ 112 (431)
.|++|+|++.||++++ ....++++.+... .+. . -...|.++.|+.+. +
T Consensus 34 ~D~~Y~~lm~Wls~q~-~~~~~r~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~G~h~F~y~G~~~~~~R 112 (187)
T PF08740_consen 34 DDEAYDWLMRWLSSQP-FSKRSRHLSATTRSNSSWDDDESDDEDSWDTNTSDDKKKPIRFTPSPGTHWFWYKGRWFWFSR 112 (187)
T ss_pred CCHHHHHHHHHHhhCC-cccccceeEEEeecccccccccccccchhccccccCCcCCeEEEeCCCCEEEEECCEEEEEEE
Confidence 6999999999999999 5556777663110 000 0 11256677765432 2
Q ss_pred cCCCCceeecCCCCCceEEEEEEeccchhhhhhhhHHHHHHHHHHHHHHhhccc--eeeccCCccccCCcceeeeccCCC
Q 035603 113 VPRTPVVYFYPGSYDERHYTLTFHKRYRELITGEYVNQVLEEGKAIAVRNRQRK--LYKNVPCQAWYEKKWSHVYFEHPA 190 (431)
Q Consensus 113 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~v~~~yl~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~w~~~~~~~p~ 190 (431)
..+....+...+ .+...++|++..+.++. |+.+|++|++...++.+.+ ||...+.+ ..|+.+.-.+++
T Consensus 113 ~~~~~~~~~~~~-~~~e~l~l~~lg~s~~~-----l~~ll~ear~~~~~~~~~~t~Iy~~~~~~----~~W~~~~~r~~R 182 (187)
T PF08740_consen 113 QRESNSYNSWTG-APDETLTLSCLGRSPKP-----LKDLLEEAREYYLKKQKGKTTIYRADGSE----YRWRRVASRPKR 182 (187)
T ss_pred EeccccccccCC-CCceEEEEEEecCCHHH-----HHHHHHHHHHHHHHhcCCcEEEEeCCCCC----CCCcCCCCcCCC
Confidence 222222221111 22467889888887765 7899999999998876655 78876432 269988878889
Q ss_pred Ccccc
Q 035603 191 TFDTL 195 (431)
Q Consensus 191 ~f~~l 195 (431)
++++|
T Consensus 183 plsTV 187 (187)
T PF08740_consen 183 PLSTV 187 (187)
T ss_pred CCCCC
Confidence 99886
No 190
>TIGR02031 BchD-ChlD magnesium chelatase ATPase subunit D. This model represents one of two ATPase subunits of the trimeric magnesium chelatase responsible for insertion of magnesium ion into protoporphyrin IX. This is an essential step in the biosynthesis of both chlorophyll and bacteriochlorophyll. This subunit is found in green plants, photosynthetic algae, cyanobacteria and other photosynthetic bacteria. Unlike subunit I (TIGR02030), this subunit is not found in archaea.
Probab=98.43 E-value=2.1e-06 Score=92.51 Aligned_cols=120 Identities=16% Similarity=0.171 Sum_probs=81.3
Q ss_pred ceeEEeCCCCCcHHHHHHHHHHHcCC--CeEEecccCcC----ChHHHHHHHH------------Hhhhc-------ccc
Q 035603 228 RGYLLFGPPGTGKSTMIAAMANCLNY--DVYDLELTSVE----NNNELRSLLV------------DISSK-------KKK 282 (431)
Q Consensus 228 rg~LL~GPPGtGKTsla~aiA~~l~~--~i~~l~~~~~~----~~~~l~~l~~------------~~~~~-------~~~ 282 (431)
.++||.|+||||||+++++++..++. +|+.+...... +.-.+...+. .+.+. +..
T Consensus 17 g~vLl~G~~GtgKs~lar~l~~~~~~~~pfv~i~~~~t~d~L~G~idl~~~~~~g~~~~~~G~L~~A~~GvL~lDEi~rl 96 (589)
T TIGR02031 17 GGVAIRARAGTGKTALARALAEILPPIMPFVELPLGVTEDRLIGGIDVEESLAGGQRVTQPGLLDEAPRGVLYVDMANLL 96 (589)
T ss_pred ceEEEEcCCCcHHHHHHHHHHHhCCcCCCeEecCcccchhhcccchhhhhhhhcCcccCCCCCeeeCCCCcEeccchhhC
Confidence 48999999999999999999998865 47777642211 1111111111 11100 334
Q ss_pred hhhHHHHHHHHhcCc---------ccCCCCceEEEEecCCCC---CCChhhhccCceeEEEEcCCC-CHHHHHHHHHHhh
Q 035603 283 SNVTLSGLLNCIGGL---------WSTCGGERIIVFTTNHVD---KLDPALIRRGRMDKHIEMPYC-CFEAFKVLAKNYL 349 (431)
Q Consensus 283 ~~~~~s~lL~~ldg~---------~~~~~~~~ivI~TTN~~~---~Ld~AllRpGRfd~~I~~~~p-~~~~r~~i~~~~l 349 (431)
...+.+.|++.|+.- .........||+|+|..+ .|+++|+. ||+.+|.+.++ +.++|.+|++.++
T Consensus 97 ~~~~q~~Ll~al~~g~v~i~r~G~~~~~p~~f~lIAt~np~e~~g~L~~~Lld--Rf~l~v~~~~~~~~~er~eil~~~~ 174 (589)
T TIGR02031 97 DDGLSNRLLQALDEGVVIVEREGISVVHPAKFALIATYDPAEGGGGLPDHLLD--RLALHVSLEDVASQDLRVEIVRRER 174 (589)
T ss_pred CHHHHHHHHHHHHcCCeEEEECCCceeecCceEEEEecCCccccCCCCHHHHH--hccCeeecCCCCCHHHHHHHHHHHH
Confidence 566788888888621 111223468889999876 79999999 99999998875 5677888888765
No 191
>PRK08939 primosomal protein DnaI; Reviewed
Probab=98.43 E-value=6.5e-07 Score=88.73 Aligned_cols=69 Identities=26% Similarity=0.420 Sum_probs=48.7
Q ss_pred CCCccccccChhhHHHHHHHHHHHHhCHHHHHHhCCCCCceeEEeCCCCCcHHHHHHHHHHHc---CCCeEEecccC
Q 035603 189 PATFDTLAMASKKKEAIKKDLIKFTEGKEYYAKIGKAWKRGYLLFGPPGTGKSTMIAAMANCL---NYDVYDLELTS 262 (431)
Q Consensus 189 p~~f~~l~g~~~~k~~i~~~l~~~~~~~~~~~~~g~~~~rg~LL~GPPGtGKTsla~aiA~~l---~~~i~~l~~~~ 262 (431)
..+|+++...+.-+..+.+.+..|+.. |.. | +..+|++|+||||||||.|+.|||+++ |.++..+..+.
T Consensus 123 ~atf~~~~~~~~~~~~~~~~~~~fi~~---~~~-~-~~~~gl~L~G~~G~GKThLa~Aia~~l~~~g~~v~~~~~~~ 194 (306)
T PRK08939 123 QASLADIDLDDRDRLDALMAALDFLEA---YPP-G-EKVKGLYLYGDFGVGKSYLLAAIANELAKKGVSSTLLHFPE 194 (306)
T ss_pred cCcHHHhcCCChHHHHHHHHHHHHHHH---hhc-c-CCCCeEEEECCCCCCHHHHHHHHHHHHHHcCCCEEEEEHHH
Confidence 467888876664455555555666642 111 1 346799999999999999999999988 67776665554
No 192
>KOG1942 consensus DNA helicase, TBP-interacting protein [Replication, recombination and repair]
Probab=98.39 E-value=2e-05 Score=76.07 Aligned_cols=64 Identities=27% Similarity=0.348 Sum_probs=45.5
Q ss_pred cccccChhhHHHHHHHHHHHHhCHHHHHHhCCCCCceeEEeCCCCCcHHHHHHHHHHHcCC--CeEEecccCcC
Q 035603 193 DTLAMASKKKEAIKKDLIKFTEGKEYYAKIGKAWKRGYLLFGPPGTGKSTMIAAMANCLNY--DVYDLELTSVE 264 (431)
Q Consensus 193 ~~l~g~~~~k~~i~~~l~~~~~~~~~~~~~g~~~~rg~LL~GPPGtGKTsla~aiA~~l~~--~i~~l~~~~~~ 264 (431)
+.++|+.+.++.- -.+...++.+ .-..|++||-||||||||-||-+|+.+||. ||+-+..+++.
T Consensus 38 ~g~vGQ~~AReAa-giivdlik~K-------kmaGravLlaGppgtGKTAlAlaisqELG~kvPFcpmvgSEvy 103 (456)
T KOG1942|consen 38 AGFVGQENAREAA-GIIVDLIKSK-------KMAGRAVLLAGPPGTGKTALALAISQELGPKVPFCPMVGSEVY 103 (456)
T ss_pred cccccchhhhhhh-hHHHHHHHhh-------hccCcEEEEecCCCCchhHHHHHHHHHhCCCCCcccccchhhh
Confidence 4467887777653 2233334332 234689999999999999999999999974 66666666653
No 193
>PRK11388 DNA-binding transcriptional regulator DhaR; Provisional
Probab=98.39 E-value=1.2e-05 Score=87.75 Aligned_cols=147 Identities=20% Similarity=0.163 Sum_probs=92.5
Q ss_pred CCccccccChhhHHHHHHHHHHHHhCHHHHHHhCCCCCceeEEeCCCCCcHHHHHHHHHHHcC---CCeEEecccCcCCh
Q 035603 190 ATFDTLAMASKKKEAIKKDLIKFTEGKEYYAKIGKAWKRGYLLFGPPGTGKSTMIAAMANCLN---YDVYDLELTSVENN 266 (431)
Q Consensus 190 ~~f~~l~g~~~~k~~i~~~l~~~~~~~~~~~~~g~~~~rg~LL~GPPGtGKTsla~aiA~~l~---~~i~~l~~~~~~~~ 266 (431)
.+|++++|.....+.+.+.+...... ...+||+|+|||||+++|++|.+... -+|+.+||..+...
T Consensus 322 ~~~~~l~g~s~~~~~~~~~~~~~a~~-----------~~pvli~Ge~GtGK~~~A~~ih~~s~r~~~pfv~vnc~~~~~~ 390 (638)
T PRK11388 322 HTFDHMPQDSPQMRRLIHFGRQAAKS-----------SFPVLLCGEEGVGKALLAQAIHNESERAAGPYIAVNCQLYPDE 390 (638)
T ss_pred ccccceEECCHHHHHHHHHHHHHhCc-----------CCCEEEECCCCcCHHHHHHHHHHhCCccCCCeEEEECCCCChH
Confidence 46888888888877777777665542 35699999999999999999988754 58999999988543
Q ss_pred HHHHHHHHHhh---h-----c--------------ccchhhHHHHHHHHhcCcccC-CCC------ceEEEEecCCCCCC
Q 035603 267 NELRSLLVDIS---S-----K--------------KKKSNVTLSGLLNCIGGLWST-CGG------ERIIVFTTNHVDKL 317 (431)
Q Consensus 267 ~~l~~l~~~~~---~-----~--------------~~~~~~~~s~lL~~ldg~~~~-~~~------~~ivI~TTN~~~~L 317 (431)
.--..+|.... . . +.-.......|+..++.-.-. .++ .+-||+|||.. +
T Consensus 391 ~~~~elfg~~~~~~~~~~~g~~~~a~~GtL~ldei~~l~~~~Q~~Ll~~l~~~~~~~~~~~~~~~~~~riI~~t~~~--l 468 (638)
T PRK11388 391 ALAEEFLGSDRTDSENGRLSKFELAHGGTLFLEKVEYLSPELQSALLQVLKTGVITRLDSRRLIPVDVRVIATTTAD--L 468 (638)
T ss_pred HHHHHhcCCCCcCccCCCCCceeECCCCEEEEcChhhCCHHHHHHHHHHHhcCcEEeCCCCceEEeeEEEEEeccCC--H
Confidence 22234554220 0 0 223344556777777532111 111 35688888753 1
Q ss_pred ChhhhccCce---------eEEEEcCCCCH--HHHHHHHHHhhc
Q 035603 318 DPALIRRGRM---------DKHIEMPYCCF--EAFKVLAKNYLE 350 (431)
Q Consensus 318 d~AllRpGRf---------d~~I~~~~p~~--~~r~~i~~~~l~ 350 (431)
..+...|+| ...|.+|+... +....|+..|+.
T Consensus 469 -~~~~~~~~f~~dL~~~l~~~~i~lPpLreR~~Di~~L~~~~l~ 511 (638)
T PRK11388 469 -AMLVEQNRFSRQLYYALHAFEITIPPLRMRREDIPALVNNKLR 511 (638)
T ss_pred -HHHHhcCCChHHHhhhhceeEEeCCChhhhhhHHHHHHHHHHH
Confidence 233444555 45666666542 455667777764
No 194
>PRK08181 transposase; Validated
Probab=98.38 E-value=4.6e-06 Score=81.15 Aligned_cols=36 Identities=42% Similarity=0.629 Sum_probs=29.3
Q ss_pred CceeEEeCCCCCcHHHHHHHHHHHc---CCCeEEecccC
Q 035603 227 KRGYLLFGPPGTGKSTMIAAMANCL---NYDVYDLELTS 262 (431)
Q Consensus 227 ~rg~LL~GPPGtGKTsla~aiA~~l---~~~i~~l~~~~ 262 (431)
+.+++|+||||||||.|+.|||+++ |+.++.++..+
T Consensus 106 ~~nlll~Gp~GtGKTHLa~Aia~~a~~~g~~v~f~~~~~ 144 (269)
T PRK08181 106 GANLLLFGPPGGGKSHLAAAIGLALIENGWRVLFTRTTD 144 (269)
T ss_pred CceEEEEecCCCcHHHHHHHHHHHHHHcCCceeeeeHHH
Confidence 4689999999999999999999754 66676666544
No 195
>PHA02624 large T antigen; Provisional
Probab=98.38 E-value=6.4e-06 Score=87.10 Aligned_cols=110 Identities=19% Similarity=0.233 Sum_probs=70.2
Q ss_pred CCCCCceeEEeCCCCCcHHHHHHHHHHHcCCCeEEecccCcCChHHHHH-------HHHHhhhc--------ccchhhHH
Q 035603 223 GKAWKRGYLLFGPPGTGKSTMIAAMANCLNYDVYDLELTSVENNNELRS-------LLVDISSK--------KKKSNVTL 287 (431)
Q Consensus 223 g~~~~rg~LL~GPPGtGKTsla~aiA~~l~~~i~~l~~~~~~~~~~l~~-------l~~~~~~~--------~~~~~~~~ 287 (431)
|+|.++.+|||||||||||+++.+|++.++-.++.++.+.-...-.|.- +|.++... .+..-..+
T Consensus 427 giPKk~~il~~GPpnTGKTtf~~sLl~~L~G~vlsVNsPt~ks~FwL~pl~D~~~~l~dD~t~~~~~~~~Lp~G~~~dNl 506 (647)
T PHA02624 427 NVPKRRYWLFKGPVNSGKTTLAAALLDLCGGKSLNVNCPPDKLNFELGCAIDQFMVVFEDVKGQPADNKDLPSGQGMNNL 506 (647)
T ss_pred cCCCCeEEEEECCCCCCHHHHHHHHHHHcCCeEEEeeCCcchhHHHhhhhhhceEEEeeeccccccccccCCcccccchh
Confidence 6888999999999999999999999999966666676444222212221 12222211 01112235
Q ss_pred HHHHHHhcCcccC-----CCCce-----EEEEecCCCCCCChhhhccCceeEEEEcCC
Q 035603 288 SGLLNCIGGLWST-----CGGER-----IIVFTTNHVDKLDPALIRRGRMDKHIEMPY 335 (431)
Q Consensus 288 s~lL~~ldg~~~~-----~~~~~-----ivI~TTN~~~~Ld~AllRpGRfd~~I~~~~ 335 (431)
.-|-|.|||-..- ....+ -.|.|||. ..||..+.- ||-..|.|..
T Consensus 507 ~~lRn~LDG~V~v~ld~KH~n~~q~~~PPlliT~Ne-y~iP~T~~~--Rf~~~~~F~~ 561 (647)
T PHA02624 507 DNLRDYLDGSVPVNLEKKHLNKRSQIFPPGIVTMNE-YLIPQTVKA--RFAKVLDFKP 561 (647)
T ss_pred hHHHhhcCCCCccccchhccCchhccCCCeEEeecC-cccchhHHH--HHHHhccccc
Confidence 6788899986111 00111 26778887 578888887 8988888764
No 196
>TIGR01817 nifA Nif-specific regulatory protein. This model represents NifA, a DNA-binding regulatory protein for nitrogen fixation. The model produces scores between the trusted and noise cutoffs for a well-described NifA homolog in Aquifex aeolicus (which lacks nitrogenase), for transcriptional activators of alternative nitrogenases (VFe or FeFe instead of MoFe), and truncated forms.
Probab=98.36 E-value=1.4e-05 Score=85.42 Aligned_cols=148 Identities=20% Similarity=0.186 Sum_probs=94.4
Q ss_pred CCCccccccChhhHHHHHHHHHHHHhCHHHHHHhCCCCCceeEEeCCCCCcHHHHHHHHHHHc---CCCeEEecccCcCC
Q 035603 189 PATFDTLAMASKKKEAIKKDLIKFTEGKEYYAKIGKAWKRGYLLFGPPGTGKSTMIAAMANCL---NYDVYDLELTSVEN 265 (431)
Q Consensus 189 p~~f~~l~g~~~~k~~i~~~l~~~~~~~~~~~~~g~~~~rg~LL~GPPGtGKTsla~aiA~~l---~~~i~~l~~~~~~~ 265 (431)
..+|+.++|.....+.+.+.+...... ...+||+|+|||||+++|++|.... +.+|+.+||..+..
T Consensus 192 ~~~~~~liG~s~~~~~~~~~~~~~a~~-----------~~pvli~Ge~GtGK~~lA~~ih~~s~r~~~pfv~i~c~~~~~ 260 (534)
T TIGR01817 192 SGKEDGIIGKSPAMRQVVDQARVVARS-----------NSTVLLRGESGTGKELIAKAIHYLSPRAKRPFVKVNCAALSE 260 (534)
T ss_pred cCccCceEECCHHHHHHHHHHHHHhCc-----------CCCEEEECCCCccHHHHHHHHHHhCCCCCCCeEEeecCCCCH
Confidence 367899999999988888877766542 4579999999999999999999875 46899999998743
Q ss_pred hHHHHH-HHHHhh------------------hc-------ccchhhHHHHHHHHhcCcc-cCCCC------ceEEEEecC
Q 035603 266 NNELRS-LLVDIS------------------SK-------KKKSNVTLSGLLNCIGGLW-STCGG------ERIIVFTTN 312 (431)
Q Consensus 266 ~~~l~~-l~~~~~------------------~~-------~~~~~~~~s~lL~~ldg~~-~~~~~------~~ivI~TTN 312 (431)
..+.. +|.... +. +.-+......|++.++.-. ...++ .+-+|+|||
T Consensus 261 -~~~~~~lfg~~~~~~~~~~~~~~g~~~~a~~GtL~ldei~~L~~~~Q~~Ll~~l~~~~~~~~~~~~~~~~~~riI~~s~ 339 (534)
T TIGR01817 261 -TLLESELFGHEKGAFTGAIAQRKGRFELADGGTLFLDEIGEISPAFQAKLLRVLQEGEFERVGGNRTLKVDVRLVAATN 339 (534)
T ss_pred -HHHHHHHcCCCCCccCCCCcCCCCcccccCCCeEEEechhhCCHHHHHHHHHHHhcCcEEECCCCceEeecEEEEEeCC
Confidence 33332 332110 00 2223445667777775321 11111 256777776
Q ss_pred CC-------CCCChhhhccCce-eEEEEcCCCC--HHHHHHHHHHhhc
Q 035603 313 HV-------DKLDPALIRRGRM-DKHIEMPYCC--FEAFKVLAKNYLE 350 (431)
Q Consensus 313 ~~-------~~Ld~AllRpGRf-d~~I~~~~p~--~~~r~~i~~~~l~ 350 (431)
.. ..+.+.|.. |+ ...|.+|+.. .+....|+..|+.
T Consensus 340 ~~l~~~~~~~~f~~~L~~--rl~~~~i~lPpLreR~eDi~~L~~~~l~ 385 (534)
T TIGR01817 340 RDLEEAVAKGEFRADLYY--RINVVPIFLPPLRERREDIPLLAEAFLE 385 (534)
T ss_pred CCHHHHHHcCCCCHHHHH--HhcCCeeeCCCcccccccHHHHHHHHHH
Confidence 42 233344444 44 3467777665 4566677777764
No 197
>TIGR02974 phageshock_pspF psp operon transcriptional activator PspF. Members of this protein family are PspF, the sigma-54-dependent transcriptional activator of the phage shock protein (psp) operon, in Escherichia coli and numerous other species. The psp operon is induced by a number of stress conditions, including heat shock, ethanol, and filamentous phage infection. Changed com_name to adhere to TIGR role notes conventions. 09/15/06 - DMH
Probab=98.31 E-value=7.3e-06 Score=82.17 Aligned_cols=141 Identities=19% Similarity=0.175 Sum_probs=85.3
Q ss_pred ccChhhHHHHHHHHHHHHhCHHHHHHhCCCCCceeEEeCCCCCcHHHHHHHHHHHc---CCCeEEecccCcCChHHHH-H
Q 035603 196 AMASKKKEAIKKDLIKFTEGKEYYAKIGKAWKRGYLLFGPPGTGKSTMIAAMANCL---NYDVYDLELTSVENNNELR-S 271 (431)
Q Consensus 196 ~g~~~~k~~i~~~l~~~~~~~~~~~~~g~~~~rg~LL~GPPGtGKTsla~aiA~~l---~~~i~~l~~~~~~~~~~l~-~ 271 (431)
+|.....+.+.+.+..... ....+||+|+|||||+++|++|-... +.+|+.+||..+.. +.+. .
T Consensus 2 iG~S~~m~~~~~~~~~~a~-----------~~~pVLI~GE~GtGK~~lAr~iH~~s~r~~~pfv~vnc~~~~~-~~l~~~ 69 (329)
T TIGR02974 2 IGESNAFLEVLEQVSRLAP-----------LDRPVLIIGERGTGKELIAARLHYLSKRWQGPLVKLNCAALSE-NLLDSE 69 (329)
T ss_pred CcCCHHHHHHHHHHHHHhC-----------CCCCEEEECCCCChHHHHHHHHHHhcCccCCCeEEEeCCCCCh-HHHHHH
Confidence 4555556666666654443 24579999999999999999997655 36899999998743 2333 2
Q ss_pred HHHHh------------------hhc-------ccchhhHHHHHHHHhcCcc-cC------CCCceEEEEecCCC-----
Q 035603 272 LLVDI------------------SSK-------KKKSNVTLSGLLNCIGGLW-ST------CGGERIIVFTTNHV----- 314 (431)
Q Consensus 272 l~~~~------------------~~~-------~~~~~~~~s~lL~~ldg~~-~~------~~~~~ivI~TTN~~----- 314 (431)
+|... .+. +.-+......|+..|+.-. .. ...++-||+|||..
T Consensus 70 lfG~~~g~~~ga~~~~~G~~~~a~gGtL~Ldei~~L~~~~Q~~Ll~~l~~~~~~~~g~~~~~~~~~RiI~at~~~l~~~~ 149 (329)
T TIGR02974 70 LFGHEAGAFTGAQKRHQGRFERADGGTLFLDELATASLLVQEKLLRVIEYGEFERVGGSQTLQVDVRLVCATNADLPALA 149 (329)
T ss_pred HhccccccccCcccccCCchhhCCCCEEEeCChHhCCHHHHHHHHHHHHcCcEEecCCCceeccceEEEEechhhHHHHh
Confidence 33211 100 2223445666777774321 00 11235677777753
Q ss_pred --CCCChhhhccCce-eEEEEcCCCC--HHHHHHHHHHhhc
Q 035603 315 --DKLDPALIRRGRM-DKHIEMPYCC--FEAFKVLAKNYLE 350 (431)
Q Consensus 315 --~~Ld~AllRpGRf-d~~I~~~~p~--~~~r~~i~~~~l~ 350 (431)
..+.+.|.. |+ ...|++|+.. .+....|+..|+.
T Consensus 150 ~~g~fr~dL~~--rl~~~~i~lPpLReR~eDI~~L~~~fl~ 188 (329)
T TIGR02974 150 AEGRFRADLLD--RLAFDVITLPPLRERQEDIMLLAEHFAI 188 (329)
T ss_pred hcCchHHHHHH--HhcchhcCCCchhhhhhhHHHHHHHHHH
Confidence 245567776 77 3467777665 3556667777664
No 198
>PRK12377 putative replication protein; Provisional
Probab=98.29 E-value=3e-06 Score=81.43 Aligned_cols=66 Identities=18% Similarity=0.300 Sum_probs=42.0
Q ss_pred CCccccccChhhHHHHHHHHHHHHhCHHHHHHhCCCCCceeEEeCCCCCcHHHHHHHHHHHc---CCCeEEecccC
Q 035603 190 ATFDTLAMASKKKEAIKKDLIKFTEGKEYYAKIGKAWKRGYLLFGPPGTGKSTMIAAMANCL---NYDVYDLELTS 262 (431)
Q Consensus 190 ~~f~~l~g~~~~k~~i~~~l~~~~~~~~~~~~~g~~~~rg~LL~GPPGtGKTsla~aiA~~l---~~~i~~l~~~~ 262 (431)
.+|++.....+-.+.+...+..+... |.. ...+++|+||||||||+|+.|||+++ |..++.++..+
T Consensus 71 ~tFdnf~~~~~~~~~a~~~a~~~a~~---~~~----~~~~l~l~G~~GtGKThLa~AIa~~l~~~g~~v~~i~~~~ 139 (248)
T PRK12377 71 CSFANYQVQNDGQRYALSQAKSIADE---LMT----GCTNFVFSGKPGTGKNHLAAAIGNRLLAKGRSVIVVTVPD 139 (248)
T ss_pred CCcCCcccCChhHHHHHHHHHHHHHH---HHh----cCCeEEEECCCCCCHHHHHHHHHHHHHHcCCCeEEEEHHH
Confidence 46777654433333344444444332 111 23689999999999999999999987 55666655544
No 199
>COG1239 ChlI Mg-chelatase subunit ChlI [Coenzyme metabolism]
Probab=98.28 E-value=7.6e-06 Score=82.75 Aligned_cols=147 Identities=18% Similarity=0.199 Sum_probs=94.6
Q ss_pred CCCccccccChhhHHHHHHHHHHHHhCHHHHHHhCCCCCceeEEeCCCCCcHHHHHHHHHHHcCCCeEEecccC------
Q 035603 189 PATFDTLAMASKKKEAIKKDLIKFTEGKEYYAKIGKAWKRGYLLFGPPGTGKSTMIAAMANCLNYDVYDLELTS------ 262 (431)
Q Consensus 189 p~~f~~l~g~~~~k~~i~~~l~~~~~~~~~~~~~g~~~~rg~LL~GPPGtGKTsla~aiA~~l~~~i~~l~~~~------ 262 (431)
...|.-++|++.+|..|.-.... |.-.|+|+-|+.|||||+++||||..|.--.....+..
T Consensus 13 ~~pf~aivGqd~lk~aL~l~av~-------------P~iggvLI~G~kGtaKSt~~Rala~LLp~~~~V~gc~f~cdP~~ 79 (423)
T COG1239 13 NLPFTAIVGQDPLKLALGLNAVD-------------PQIGGALIAGEKGTAKSTLARALADLLPEIEVVIGCPFNCDPDD 79 (423)
T ss_pred ccchhhhcCchHHHHHHhhhhcc-------------cccceeEEecCCCccHHHHHHHHHHhCCccceecCCCCCCCCCC
Confidence 45678889999999887543221 22358999999999999999999998753221112110
Q ss_pred --------------------------------cCChHH------HHHHHHHhhhc-------------------ccchhh
Q 035603 263 --------------------------------VENNNE------LRSLLVDISSK-------------------KKKSNV 285 (431)
Q Consensus 263 --------------------------------~~~~~~------l~~l~~~~~~~-------------------~~~~~~ 285 (431)
..+.+. +.+.+...... +.-...
T Consensus 80 P~~~c~~c~~k~~e~~~~~~~~r~v~~v~lPl~ateDrvvGslDi~ka~~~g~~af~PGlLa~AnRGIlYvDEvnlL~d~ 159 (423)
T COG1239 80 PEEMCDECRAKGDELEWLPREKRKVPFVALPLGATEDRLVGSLDIEKALEEGPKAFQPGLLARANRGILYVDEVNLLDDH 159 (423)
T ss_pred hhhhhHHHHhhccccccccccceecceecCCCccchhhhccccCHHHHHhcCccccCCcchhhccCCEEEEeccccccHH
Confidence 001110 11111110000 223456
Q ss_pred HHHHHHHHh---------cCcccCCCCceEEEEecCCC-CCCChhhhccCceeEEEEcCCCC-HHHHHHHHHHhhc
Q 035603 286 TLSGLLNCI---------GGLWSTCGGERIIVFTTNHV-DKLDPALIRRGRMDKHIEMPYCC-FEAFKVLAKNYLE 350 (431)
Q Consensus 286 ~~s~lL~~l---------dg~~~~~~~~~ivI~TTN~~-~~Ld~AllRpGRfd~~I~~~~p~-~~~r~~i~~~~l~ 350 (431)
....||+.+ +|+.-...-++++|+|+|.- ..|-|-|+. ||..+|.+.+|. .++|.++.++-+.
T Consensus 160 lvd~LLd~aaeG~n~vereGisi~hpa~fvligTmNPEeGeLrpqLlD--Rfg~~v~~~~~~~~~~rv~Ii~r~~~ 233 (423)
T COG1239 160 LVDALLDVAAEGVNDVEREGISIRHPARFLLIGTMNPEEGELRPQLLD--RFGLEVDTHYPLDLEERVEIIRRRLA 233 (423)
T ss_pred HHHHHHHHHHhCCceeeeCceeeccCccEEEEeecCccccccchhhHh--hhcceeeccCCCCHHHHHHHHHHHHH
Confidence 677777766 34444445568999999965 478899999 999999999985 6777777776543
No 200
>PF12774 AAA_6: Hydrolytic ATP binding site of dynein motor region D1; PDB: 3VKH_A 3VKG_A 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A.
Probab=98.25 E-value=4.9e-05 Score=72.34 Aligned_cols=120 Identities=21% Similarity=0.202 Sum_probs=71.0
Q ss_pred CCceeEEeCCCCCcHHHHHHHHHHHcCCCeEEecccCcCChHHHHHHHHHhhhc---------ccchhhHHHHH---HHH
Q 035603 226 WKRGYLLFGPPGTGKSTMIAAMANCLNYDVYDLELTSVENNNELRSLLVDISSK---------KKKSNVTLSGL---LNC 293 (431)
Q Consensus 226 ~~rg~LL~GPPGtGKTsla~aiA~~l~~~i~~l~~~~~~~~~~l~~l~~~~~~~---------~~~~~~~~s~l---L~~ 293 (431)
...|-.++||+|||||.+++++|..+|..++.+++++..+-..+.++|...... +.-+..++|.+ +..
T Consensus 31 ~~~~~~~~GpagtGKtetik~La~~lG~~~~vfnc~~~~~~~~l~ril~G~~~~GaW~cfdefnrl~~~vLS~i~~~i~~ 110 (231)
T PF12774_consen 31 LNLGGALSGPAGTGKTETIKDLARALGRFVVVFNCSEQMDYQSLSRILKGLAQSGAWLCFDEFNRLSEEVLSVISQQIQS 110 (231)
T ss_dssp TTTEEEEESSTTSSHHHHHHHHHHCTT--EEEEETTSSS-HHHHHHHHHHHHHHT-EEEEETCCCSSHHHHHHHHHHHHH
T ss_pred cCCCCCCcCCCCCCchhHHHHHHHHhCCeEEEecccccccHHHHHHHHHHHhhcCchhhhhhhhhhhHHHHHHHHHHHHH
Confidence 346778999999999999999999999999999999988888899998776655 22222333322 222
Q ss_pred h-cCcccC------------CCCceEEEEecC----CCCCCChhhhccCceeEEEEcCCCCHHHHHHHHHHh
Q 035603 294 I-GGLWST------------CGGERIIVFTTN----HVDKLDPALIRRGRMDKHIEMPYCCFEAFKVLAKNY 348 (431)
Q Consensus 294 l-dg~~~~------------~~~~~ivI~TTN----~~~~Ld~AllRpGRfd~~I~~~~p~~~~r~~i~~~~ 348 (431)
+ +.+... -....-++.|.| ....||+.|.. +=+.|.|..||.....++.-.-
T Consensus 111 i~~al~~~~~~~~~~g~~i~l~~~~~iFiT~np~y~gr~~LP~nLk~---lFRpvam~~PD~~~I~ei~L~s 179 (231)
T PF12774_consen 111 IQDALRAKQKSFTLEGQEIKLNPNCGIFITMNPGYAGRSELPENLKA---LFRPVAMMVPDLSLIAEILLLS 179 (231)
T ss_dssp HHHHHHCTSSEEEETTCEEE--TT-EEEEEE-B-CCCC--S-HHHCT---TEEEEE--S--HHHHHHHHHHC
T ss_pred HHHhhcccccccccCCCEEEEccceeEEEeeccccCCcccCCHhHHH---HhheeEEeCCCHHHHHHHHHHH
Confidence 2 111100 001123555666 33578888865 3378999999988766655433
No 201
>PF00158 Sigma54_activat: Sigma-54 interaction domain; InterPro: IPR002078 Some bacterial regulatory proteins activate the expression of genes from promoters recognised by core RNA polymerase associated with the alternative sigma-54 factor. These have a conserved domain of about 230 residues involved in the ATP-dependent [, ] interaction with sigma-54. About half of the proteins in which this domain is found (algB, dcdT, flbD, hoxA, hupR1, hydG, ntrC, pgtA and pilR) belong to signal transduction two-component systems [] and possess a domain that can be phosphorylated by a sensor-kinase protein in their N-terminal section. Almost all of these proteins possess a helix-turn-helix DNA-binding domain in their C-terminal section. The domain which interacts with the sigma-54 factor has an ATPase activity. This may be required to promote a conformational change necessary for the interaction []. The domain contains an atypical ATP-binding motif A (P-loop) as well as a form of motif B. The two ATP-binding motifs are located in the N-terminal section of the domain.; GO: 0005524 ATP binding, 0008134 transcription factor binding, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 1NY6_K 3M0E_G 1NY5_A 1OJL_A 3DZD_B 2C9C_A 2C98_A 2C96_A 2BJV_A 2C99_A ....
Probab=98.24 E-value=4.2e-06 Score=75.78 Aligned_cols=119 Identities=18% Similarity=0.174 Sum_probs=69.6
Q ss_pred cccChhhHHHHHHHHHHHHhCHHHHHHhCCCCCceeEEeCCCCCcHHHHHHHHHHHcC---CCeEEecccCcCChHHHHH
Q 035603 195 LAMASKKKEAIKKDLIKFTEGKEYYAKIGKAWKRGYLLFGPPGTGKSTMIAAMANCLN---YDVYDLELTSVENNNELRS 271 (431)
Q Consensus 195 l~g~~~~k~~i~~~l~~~~~~~~~~~~~g~~~~rg~LL~GPPGtGKTsla~aiA~~l~---~~i~~l~~~~~~~~~~l~~ 271 (431)
|+|.+...+.+++.+...... +..+||+|++||||+.+|++|-+... .+|+.+||+.+..+.--..
T Consensus 1 liG~s~~m~~~~~~~~~~a~~-----------~~pVlI~GE~GtGK~~lA~~IH~~s~r~~~pfi~vnc~~~~~~~~e~~ 69 (168)
T PF00158_consen 1 LIGESPAMKRLREQAKRAASS-----------DLPVLITGETGTGKELLARAIHNNSPRKNGPFISVNCAALPEELLESE 69 (168)
T ss_dssp SS--SHHHHHHHHHHHHHTTS-----------TS-EEEECSTTSSHHHHHHHHHHCSTTTTS-EEEEETTTS-HHHHHHH
T ss_pred CEeCCHHHHHHHHHHHHHhCC-----------CCCEEEEcCCCCcHHHHHHHHHHhhhcccCCeEEEehhhhhcchhhhh
Confidence 356666666666666555543 46899999999999999999998654 5899999998843332344
Q ss_pred HHHHhhh--------c-----------------ccchhhHHHHHHHHhcCcc-cCCC------CceEEEEecCCCCCCCh
Q 035603 272 LLVDISS--------K-----------------KKKSNVTLSGLLNCIGGLW-STCG------GERIIVFTTNHVDKLDP 319 (431)
Q Consensus 272 l~~~~~~--------~-----------------~~~~~~~~s~lL~~ldg~~-~~~~------~~~ivI~TTN~~~~Ld~ 319 (431)
+|..... + +.-+......|++.|+.-. ...+ -++-||+|||.. | .
T Consensus 70 LFG~~~~~~~~~~~~~~G~l~~A~~GtL~Ld~I~~L~~~~Q~~Ll~~l~~~~~~~~g~~~~~~~~~RiI~st~~~--l-~ 146 (168)
T PF00158_consen 70 LFGHEKGAFTGARSDKKGLLEQANGGTLFLDEIEDLPPELQAKLLRVLEEGKFTRLGSDKPVPVDVRIIASTSKD--L-E 146 (168)
T ss_dssp HHEBCSSSSTTTSSEBEHHHHHTTTSEEEEETGGGS-HHHHHHHHHHHHHSEEECCTSSSEEE--EEEEEEESS---H-H
T ss_pred hhccccccccccccccCCceeeccceEEeecchhhhHHHHHHHHHHHHhhchhccccccccccccceEEeecCcC--H-H
Confidence 5543211 0 2334556677888876311 1111 146688888752 2 2
Q ss_pred hhhccCce
Q 035603 320 ALIRRGRM 327 (431)
Q Consensus 320 AllRpGRf 327 (431)
.++..|+|
T Consensus 147 ~~v~~g~f 154 (168)
T PF00158_consen 147 ELVEQGRF 154 (168)
T ss_dssp HHHHTTSS
T ss_pred HHHHcCCC
Confidence 34445555
No 202
>COG0703 AroK Shikimate kinase [Amino acid transport and metabolism]
Probab=98.19 E-value=1.1e-06 Score=79.08 Aligned_cols=161 Identities=20% Similarity=0.266 Sum_probs=80.7
Q ss_pred ceeEEeCCCCCcHHHHHHHHHHHcCCCeEEecccCc-CChHHHHHHHHHhhhc--ccchhhHHHHHHHHhcCcccCCCCc
Q 035603 228 RGYLLFGPPGTGKSTMIAAMANCLNYDVYDLELTSV-ENNNELRSLLVDISSK--KKKSNVTLSGLLNCIGGLWSTCGGE 304 (431)
Q Consensus 228 rg~LL~GPPGtGKTsla~aiA~~l~~~i~~l~~~~~-~~~~~l~~l~~~~~~~--~~~~~~~~s~lL~~ldg~~~~~~~~ 304 (431)
+.+.|.|++|+||||+.+++|+.|+++|++.|---- .....+..+|...... .......+..++..=+.+-+..|
T Consensus 3 ~~IvLiG~mGaGKSTIGr~LAk~L~~~F~D~D~~Ie~~~g~sI~eIF~~~GE~~FR~~E~~vl~~l~~~~~~ViaTGG-- 80 (172)
T COG0703 3 MNIVLIGFMGAGKSTIGRALAKALNLPFIDTDQEIEKRTGMSIAEIFEEEGEEGFRRLETEVLKELLEEDNAVIATGG-- 80 (172)
T ss_pred ccEEEEcCCCCCHhHHHHHHHHHcCCCcccchHHHHHHHCcCHHHHHHHHhHHHHHHHHHHHHHHHhhcCCeEEECCC--
Confidence 468999999999999999999999999999864211 1223456666543332 22233444444443233332222
Q ss_pred eEEEEecCCCCCCChhhhccCceeEEEEcCCCCHHHHHHHHHH-hhchh-cchhHHHHHhHhccCCCCHHHHHHHhcccC
Q 035603 305 RIIVFTTNHVDKLDPALIRRGRMDKHIEMPYCCFEAFKVLAKN-YLEIE-SHELFHEIGSLLGETDITPADVAENLMPKS 382 (431)
Q Consensus 305 ~ivI~TTN~~~~Ld~AllRpGRfd~~I~~~~p~~~~r~~i~~~-~l~~~-~~~~~~~i~~l~~~~~~s~adI~~~l~~~~ 382 (431)
.+|+---|+ ..|...| ..|++..|=......+-.. .-+.- ..+....+.++..+...-+++++......
T Consensus 81 G~v~~~enr-----~~l~~~g---~vv~L~~~~e~l~~Rl~~~~~RPll~~~~~~~~l~~L~~~R~~~Y~e~a~~~~~~- 151 (172)
T COG0703 81 GAVLSEENR-----NLLKKRG---IVVYLDAPFETLYERLQRDRKRPLLQTEDPREELEELLEERQPLYREVADFIIDT- 151 (172)
T ss_pred ccccCHHHH-----HHHHhCC---eEEEEeCCHHHHHHHhccccCCCcccCCChHHHHHHHHHHHHHHHHHhCcEEecC-
Confidence 222222222 1333333 4444444422222222111 01111 11123446677666555566766655542
Q ss_pred CCCCHHHHHHHHHHHHHH
Q 035603 383 DEDDAGTCLKNLIEALKA 400 (431)
Q Consensus 383 ~~~~~~~~l~~l~~~l~~ 400 (431)
........+.++..+..
T Consensus 152 -~~~~~~v~~~i~~~l~~ 168 (172)
T COG0703 152 -DDRSEEVVEEILEALEG 168 (172)
T ss_pred -CCCcHHHHHHHHHHHHH
Confidence 11124555666665543
No 203
>PF12775 AAA_7: P-loop containing dynein motor region D3; PDB: 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=98.17 E-value=5.7e-06 Score=80.75 Aligned_cols=121 Identities=24% Similarity=0.438 Sum_probs=69.6
Q ss_pred CceeEEeCCCCCcHHHHHHHHHHHcCCC---eEEecccCcCChHHHHHHHHHhhhc------------------------
Q 035603 227 KRGYLLFGPPGTGKSTMIAAMANCLNYD---VYDLELTSVENNNELRSLLVDISSK------------------------ 279 (431)
Q Consensus 227 ~rg~LL~GPPGtGKTsla~aiA~~l~~~---i~~l~~~~~~~~~~l~~l~~~~~~~------------------------ 279 (431)
.+.+||.||+|||||++++..-..+.-. +..++++...+...+++++...-.+
T Consensus 33 ~~pvLl~G~~GtGKT~li~~~l~~l~~~~~~~~~~~~s~~Tts~~~q~~ie~~l~k~~~~~~gP~~~k~lv~fiDDlN~p 112 (272)
T PF12775_consen 33 GRPVLLVGPSGTGKTSLIQNFLSSLDSDKYLVITINFSAQTTSNQLQKIIESKLEKRRGRVYGPPGGKKLVLFIDDLNMP 112 (272)
T ss_dssp TEEEEEESSTTSSHHHHHHHHHHCSTTCCEEEEEEES-TTHHHHHHHHCCCTTECECTTEEEEEESSSEEEEEEETTT-S
T ss_pred CCcEEEECCCCCchhHHHHhhhccCCccccceeEeeccCCCCHHHHHHHHhhcEEcCCCCCCCCCCCcEEEEEecccCCC
Confidence 5789999999999999998876666543 2345555544444555544322111
Q ss_pred --ccchhhHHHHHHHHh---cCcccCCC------CceEEEEecCCCC---CCChhhhccCceeEEEEcCCCCHHHHHHHH
Q 035603 280 --KKKSNVTLSGLLNCI---GGLWSTCG------GERIIVFTTNHVD---KLDPALIRRGRMDKHIEMPYCCFEAFKVLA 345 (431)
Q Consensus 280 --~~~~~~~~s~lL~~l---dg~~~~~~------~~~ivI~TTN~~~---~Ld~AllRpGRfd~~I~~~~p~~~~r~~i~ 345 (431)
+........+||..+ .|.+.... .++.+|+|+|... .|++.|+| .| ..+.+++|+.+....|+
T Consensus 113 ~~d~ygtq~~iElLRQ~i~~~g~yd~~~~~~~~i~~i~~vaa~~p~~Gr~~is~R~~r--~f-~i~~~~~p~~~sl~~If 189 (272)
T PF12775_consen 113 QPDKYGTQPPIELLRQLIDYGGFYDRKKLEWKSIEDIQFVAAMNPTGGRNPISPRFLR--HF-NILNIPYPSDESLNTIF 189 (272)
T ss_dssp ---TTS--HHHHHHHHHHHCSEEECTTTTEEEEECSEEEEEEESSTTT--SHHHHHHT--TE-EEEE----TCCHHHHHH
T ss_pred CCCCCCCcCHHHHHHHHHHhcCcccCCCcEEEEEeeeEEEEecCCCCCCCCCChHHhh--he-EEEEecCCChHHHHHHH
Confidence 122222334555443 23332211 2467888887542 47889998 66 57899999988888777
Q ss_pred HHhhc
Q 035603 346 KNYLE 350 (431)
Q Consensus 346 ~~~l~ 350 (431)
..++.
T Consensus 190 ~~il~ 194 (272)
T PF12775_consen 190 SSILQ 194 (272)
T ss_dssp HHHHH
T ss_pred HHHHh
Confidence 76654
No 204
>PRK10820 DNA-binding transcriptional regulator TyrR; Provisional
Probab=98.16 E-value=4.6e-05 Score=81.08 Aligned_cols=149 Identities=15% Similarity=0.194 Sum_probs=90.2
Q ss_pred CCCCccccccChhhHHHHHHHHHHHHhCHHHHHHhCCCCCceeEEeCCCCCcHHHHHHHHHHHc---CCCeEEecccCcC
Q 035603 188 HPATFDTLAMASKKKEAIKKDLIKFTEGKEYYAKIGKAWKRGYLLFGPPGTGKSTMIAAMANCL---NYDVYDLELTSVE 264 (431)
Q Consensus 188 ~p~~f~~l~g~~~~k~~i~~~l~~~~~~~~~~~~~g~~~~rg~LL~GPPGtGKTsla~aiA~~l---~~~i~~l~~~~~~ 264 (431)
...+|++++|.....+.+.+.+...... ...+||+|++||||+++|+++-... +-+|+.+||..+.
T Consensus 199 ~~~~f~~~ig~s~~~~~~~~~~~~~A~~-----------~~pvlI~GE~GtGK~~lA~aiH~~s~r~~~pfv~inca~~~ 267 (520)
T PRK10820 199 DDSAFSQIVAVSPKMRQVVEQARKLAML-----------DAPLLITGDTGTGKDLLAYACHLRSPRGKKPFLALNCASIP 267 (520)
T ss_pred ccccccceeECCHHHHHHHHHHHHHhCC-----------CCCEEEECCCCccHHHHHHHHHHhCCCCCCCeEEeccccCC
Confidence 4467999999988877777776554432 3469999999999999999986654 3589999999875
Q ss_pred ChHHHH-HHHHHhh------------------hc-------ccchhhHHHHHHHHhcCc-ccCCC------CceEEEEec
Q 035603 265 NNNELR-SLLVDIS------------------SK-------KKKSNVTLSGLLNCIGGL-WSTCG------GERIIVFTT 311 (431)
Q Consensus 265 ~~~~l~-~l~~~~~------------------~~-------~~~~~~~~s~lL~~ldg~-~~~~~------~~~ivI~TT 311 (431)
. +.+. .+|.... +. +.-+......|++.+..- ....+ ..+-||+||
T Consensus 268 ~-~~~e~elFG~~~~~~~~~~~~~~g~~e~a~~GtL~LdeI~~L~~~~Q~~Ll~~l~~~~~~~~g~~~~~~~~vRiI~st 346 (520)
T PRK10820 268 D-DVVESELFGHAPGAYPNALEGKKGFFEQANGGSVLLDEIGEMSPRMQAKLLRFLNDGTFRRVGEDHEVHVDVRVICAT 346 (520)
T ss_pred H-HHHHHHhcCCCCCCcCCcccCCCChhhhcCCCEEEEeChhhCCHHHHHHHHHHHhcCCcccCCCCcceeeeeEEEEec
Confidence 3 2232 3342111 11 222344456677776431 11111 124577777
Q ss_pred CCC-------CCCChhhhccCcee-EEEEcCCCC--HHHHHHHHHHhhc
Q 035603 312 NHV-------DKLDPALIRRGRMD-KHIEMPYCC--FEAFKVLAKNYLE 350 (431)
Q Consensus 312 N~~-------~~Ld~AllRpGRfd-~~I~~~~p~--~~~r~~i~~~~l~ 350 (431)
+.. ..+.+.|.. |+. ..|.+|+.. .+....++..|+.
T Consensus 347 ~~~l~~l~~~g~f~~dL~~--rL~~~~i~lPpLreR~~Di~~L~~~fl~ 393 (520)
T PRK10820 347 QKNLVELVQKGEFREDLYY--RLNVLTLNLPPLRDRPQDIMPLTELFVA 393 (520)
T ss_pred CCCHHHHHHcCCccHHHHh--hcCeeEEeCCCcccChhHHHHHHHHHHH
Confidence 653 234555665 653 556666654 2345556666654
No 205
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]
Probab=98.16 E-value=8.5e-06 Score=78.72 Aligned_cols=66 Identities=21% Similarity=0.369 Sum_probs=44.2
Q ss_pred CCccccccChhhHHHHHHHHHHHHhCHHHHHHhCCCCCceeEEeCCCCCcHHHHHHHHHHHc---CCCeEEecccCc
Q 035603 190 ATFDTLAMASKKKEAIKKDLIKFTEGKEYYAKIGKAWKRGYLLFGPPGTGKSTMIAAMANCL---NYDVYDLELTSV 263 (431)
Q Consensus 190 ~~f~~l~g~~~~k~~i~~~l~~~~~~~~~~~~~g~~~~rg~LL~GPPGtGKTsla~aiA~~l---~~~i~~l~~~~~ 263 (431)
..+.++-+.+...+.....+..+.. +|. -+.+++|+||||||||.||.|||+++ |.+++.+..+++
T Consensus 76 ~~~~d~~~~~~~~~~~l~~~~~~~~---~~~-----~~~nl~l~G~~G~GKThLa~Ai~~~l~~~g~sv~f~~~~el 144 (254)
T COG1484 76 FEEFDFEFQPGIDKKALEDLASLVE---FFE-----RGENLVLLGPPGVGKTHLAIAIGNELLKAGISVLFITAPDL 144 (254)
T ss_pred cccccccCCcchhHHHHHHHHHHHH---Hhc-----cCCcEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEEEHHHH
Confidence 3444555555555554444444432 222 45799999999999999999999987 566666666554
No 206
>COG1221 PspF Transcriptional regulators containing an AAA-type ATPase domain and a DNA-binding domain [Transcription / Signal transduction mechanisms]
Probab=98.14 E-value=4.9e-05 Score=77.35 Aligned_cols=152 Identities=15% Similarity=0.169 Sum_probs=99.6
Q ss_pred CCCCccccccChhhHHHHHHHHHHHHhCHHHHHHhCCCCCceeEEeCCCCCcHHHHHHHHHHH----cCCCeEEecccCc
Q 035603 188 HPATFDTLAMASKKKEAIKKDLIKFTEGKEYYAKIGKAWKRGYLLFGPPGTGKSTMIAAMANC----LNYDVYDLELTSV 263 (431)
Q Consensus 188 ~p~~f~~l~g~~~~k~~i~~~l~~~~~~~~~~~~~g~~~~rg~LL~GPPGtGKTsla~aiA~~----l~~~i~~l~~~~~ 263 (431)
....+++|+|....-+++++.+..+- |....+|++|++||||+.+|++|... .+-+|+.+||..+
T Consensus 73 ~~~~~~~LIG~~~~~~~~~eqik~~a-----------p~~~~vLi~GetGtGKel~A~~iH~~s~r~~~~PFI~~NCa~~ 141 (403)
T COG1221 73 KSEALDDLIGESPSLQELREQIKAYA-----------PSGLPVLIIGETGTGKELFARLIHALSARRAEAPFIAFNCAAY 141 (403)
T ss_pred cchhhhhhhccCHHHHHHHHHHHhhC-----------CCCCcEEEecCCCccHHHHHHHHHHhhhcccCCCEEEEEHHHh
Confidence 34568999999998888888876621 34567999999999999999999743 3568999999999
Q ss_pred CChHHHHHHHHHhhhc-------------------------ccchhhHHHHHHHHhcC-----ccc--CCCCceEEEEec
Q 035603 264 ENNNELRSLLVDISSK-------------------------KKKSNVTLSGLLNCIGG-----LWS--TCGGERIIVFTT 311 (431)
Q Consensus 264 ~~~~~l~~l~~~~~~~-------------------------~~~~~~~~s~lL~~ldg-----~~~--~~~~~~ivI~TT 311 (431)
..+-...++|...... ..-.......||..||. +.+ .....+-+|++|
T Consensus 142 ~en~~~~eLFG~~kGaftGa~~~k~Glfe~A~GGtLfLDEI~~LP~~~Q~kLl~~le~g~~~rvG~~~~~~~dVRli~AT 221 (403)
T COG1221 142 SENLQEAELFGHEKGAFTGAQGGKAGLFEQANGGTLFLDEIHRLPPEGQEKLLRVLEEGEYRRVGGSQPRPVDVRLICAT 221 (403)
T ss_pred CcCHHHHHHhccccceeecccCCcCchheecCCCEEehhhhhhCCHhHHHHHHHHHHcCceEecCCCCCcCCCceeeecc
Confidence 7776666677643332 11223344557777764 211 112245677776
Q ss_pred CC-C-CCCCh--hhhccCceeEEEEcCCCC--HHHHHHHHHHhhch
Q 035603 312 NH-V-DKLDP--ALIRRGRMDKHIEMPYCC--FEAFKVLAKNYLEI 351 (431)
Q Consensus 312 N~-~-~~Ld~--AllRpGRfd~~I~~~~p~--~~~r~~i~~~~l~~ 351 (431)
|- + +.+-. .|.|+ |+...|.+|+.. .+++..++.+|+..
T Consensus 222 ~~~l~~~~~~g~dl~~r-l~~~~I~LPpLrER~~Di~~L~e~Fl~~ 266 (403)
T COG1221 222 TEDLEEAVLAGADLTRR-LNILTITLPPLRERKEDILLLAEHFLKS 266 (403)
T ss_pred ccCHHHHHHhhcchhhh-hcCceecCCChhhchhhHHHHHHHHHHH
Confidence 63 2 22222 33332 677788888764 45666777777753
No 207
>PRK15429 formate hydrogenlyase transcriptional activator FhlA; Provisional
Probab=98.13 E-value=3.7e-05 Score=84.56 Aligned_cols=64 Identities=19% Similarity=0.291 Sum_probs=53.4
Q ss_pred CCccccccChhhHHHHHHHHHHHHhCHHHHHHhCCCCCceeEEeCCCCCcHHHHHHHHHHHc---CCCeEEecccCcC
Q 035603 190 ATFDTLAMASKKKEAIKKDLIKFTEGKEYYAKIGKAWKRGYLLFGPPGTGKSTMIAAMANCL---NYDVYDLELTSVE 264 (431)
Q Consensus 190 ~~f~~l~g~~~~k~~i~~~l~~~~~~~~~~~~~g~~~~rg~LL~GPPGtGKTsla~aiA~~l---~~~i~~l~~~~~~ 264 (431)
.+|++++|.....+.+.+.+...... ...+||+|+||||||++|++|.... +.+++.++|..+.
T Consensus 373 ~~~~~liG~S~~~~~~~~~~~~~a~~-----------~~pVLI~GE~GTGK~~lA~~ih~~s~r~~~~~v~i~c~~~~ 439 (686)
T PRK15429 373 SEFGEIIGRSEAMYSVLKQVEMVAQS-----------DSTVLILGETGTGKELIARAIHNLSGRNNRRMVKMNCAAMP 439 (686)
T ss_pred ccccceeecCHHHHHHHHHHHHHhCC-----------CCCEEEECCCCcCHHHHHHHHHHhcCCCCCCeEEEecccCC
Confidence 56889999999999988888765543 3579999999999999999998754 5689999998764
No 208
>KOG2035 consensus Replication factor C, subunit RFC3 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=98.12 E-value=2.8e-05 Score=74.48 Aligned_cols=162 Identities=17% Similarity=0.219 Sum_probs=104.9
Q ss_pred eccCCCCccccccChhhHHHHHHHHHHHHhCHHHHHHhCCCCCceeEEeCCCCCcHHHHHHHHHHHc-CCCe--------
Q 035603 185 YFEHPATFDTLAMASKKKEAIKKDLIKFTEGKEYYAKIGKAWKRGYLLFGPPGTGKSTMIAAMANCL-NYDV-------- 255 (431)
Q Consensus 185 ~~~~p~~f~~l~g~~~~k~~i~~~l~~~~~~~~~~~~~g~~~~rg~LL~GPPGtGKTsla~aiA~~l-~~~i-------- 255 (431)
..-.|.+++.+.+.++....+..... . ... ..+|+|||+|+||-+.+-++-+++ |..+
T Consensus 5 dkyrpksl~~l~~~~e~~~~Lksl~~-----~-----~d~---PHll~yGPSGaGKKTrimclL~elYG~gveklki~~~ 71 (351)
T KOG2035|consen 5 DKYRPKSLDELIYHEELANLLKSLSS-----T-----GDF---PHLLVYGPSGAGKKTRIMCLLRELYGVGVEKLKIETR 71 (351)
T ss_pred hhcCcchhhhcccHHHHHHHHHHhcc-----c-----CCC---CeEEEECCCCCCchhhHHHHHHHHhCCCchheeeeeE
Confidence 44578889998888777776644221 0 012 269999999999999999988765 3111
Q ss_pred --------------------EEecccCcCChH--HHHHHHHHhhhc-------------------ccchhhHHHHHHHHh
Q 035603 256 --------------------YDLELTSVENNN--ELRSLLVDISSK-------------------KKKSNVTLSGLLNCI 294 (431)
Q Consensus 256 --------------------~~l~~~~~~~~~--~l~~l~~~~~~~-------------------~~~~~~~~s~lL~~l 294 (431)
++++.++.+..+ -+++++.+.... +.-......+|-..|
T Consensus 72 t~~tpS~kklEistvsS~yHlEitPSDaG~~DRvViQellKevAQt~qie~~~qr~fKvvvi~ead~LT~dAQ~aLRRTM 151 (351)
T KOG2035|consen 72 TFTTPSKKKLEISTVSSNYHLEITPSDAGNYDRVVIQELLKEVAQTQQIETQGQRPFKVVVINEADELTRDAQHALRRTM 151 (351)
T ss_pred EEecCCCceEEEEEecccceEEeChhhcCcccHHHHHHHHHHHHhhcchhhccccceEEEEEechHhhhHHHHHHHHHHH
Confidence 122333333222 245565554433 233445566677777
Q ss_pred cCcccCCCCceEEEEecCCCCCCChhhhccCceeEEEEcCCCCHHHHHHHHHHhhchhcchhHHH-HHhHhcc
Q 035603 295 GGLWSTCGGERIIVFTTNHVDKLDPALIRRGRMDKHIEMPYCCFEAFKVLAKNYLEIESHELFHE-IGSLLGE 366 (431)
Q Consensus 295 dg~~~~~~~~~ivI~TTN~~~~Ld~AllRpGRfd~~I~~~~p~~~~r~~i~~~~l~~~~~~~~~~-i~~l~~~ 366 (431)
+...++ .=+|+.+|...++-+++..++ .-|.+|.|+.++...++.+.+..+...+-.+ +.+++++
T Consensus 152 EkYs~~----~RlIl~cns~SriIepIrSRC---l~iRvpaps~eeI~~vl~~v~~kE~l~lp~~~l~rIa~k 217 (351)
T KOG2035|consen 152 EKYSSN----CRLILVCNSTSRIIEPIRSRC---LFIRVPAPSDEEITSVLSKVLKKEGLQLPKELLKRIAEK 217 (351)
T ss_pred HHHhcC----ceEEEEecCcccchhHHhhhe---eEEeCCCCCHHHHHHHHHHHHHHhcccCcHHHHHHHHHH
Confidence 766544 447778898899999998843 6799999999999999888887665443333 3455543
No 209
>PRK06526 transposase; Provisional
Probab=98.12 E-value=5.9e-06 Score=79.78 Aligned_cols=34 Identities=26% Similarity=0.429 Sum_probs=27.2
Q ss_pred CceeEEeCCCCCcHHHHHHHHHHHc---CCCeEEecc
Q 035603 227 KRGYLLFGPPGTGKSTMIAAMANCL---NYDVYDLEL 260 (431)
Q Consensus 227 ~rg~LL~GPPGtGKTsla~aiA~~l---~~~i~~l~~ 260 (431)
+.+++|+||||||||.|+.+|+.++ |..++..+.
T Consensus 98 ~~nlll~Gp~GtGKThLa~al~~~a~~~g~~v~f~t~ 134 (254)
T PRK06526 98 KENVVFLGPPGTGKTHLAIGLGIRACQAGHRVLFATA 134 (254)
T ss_pred CceEEEEeCCCCchHHHHHHHHHHHHHCCCchhhhhH
Confidence 4689999999999999999999875 555544443
No 210
>PF14532 Sigma54_activ_2: Sigma-54 interaction domain; PDB: 3CO5_B 3N70_H.
Probab=98.12 E-value=9.6e-06 Score=70.77 Aligned_cols=119 Identities=20% Similarity=0.298 Sum_probs=67.5
Q ss_pred cChhhHHHHHHHHHHHHhCHHHHHHhCCCCCceeEEeCCCCCcHHHHHHHHHHHcCC---CeEEecccCcCChHHHHHHH
Q 035603 197 MASKKKEAIKKDLIKFTEGKEYYAKIGKAWKRGYLLFGPPGTGKSTMIAAMANCLNY---DVYDLELTSVENNNELRSLL 273 (431)
Q Consensus 197 g~~~~k~~i~~~l~~~~~~~~~~~~~g~~~~rg~LL~GPPGtGKTsla~aiA~~l~~---~i~~l~~~~~~~~~~l~~l~ 273 (431)
|.....+.+.+.+...... ...+||+|+|||||+++|++|....+. +++.+++.... .+++
T Consensus 2 G~S~~~~~l~~~l~~~a~~-----------~~pvli~GE~GtGK~~~A~~lh~~~~~~~~~~~~~~~~~~~-----~~~l 65 (138)
T PF14532_consen 2 GKSPAMRRLRRQLERLAKS-----------SSPVLITGEPGTGKSLLARALHRYSGRANGPFIVIDCASLP-----AELL 65 (138)
T ss_dssp -SCHHHHHHHHHHHHHHCS-----------SS-EEEECCTTSSHHHHHHCCHHTTTTCCS-CCCCCHHCTC-----HHHH
T ss_pred CCCHHHHHHHHHHHHHhCC-----------CCcEEEEcCCCCCHHHHHHHHHhhcCccCCCeEEechhhCc-----HHHH
Confidence 4445566666666655543 467999999999999999999987764 45555555533 3455
Q ss_pred HHhhhc-------ccchhhHHHHHHHHhcCcccCCCCceEEEEecCCCCC------CChhhhccCcee-EEEEcCC
Q 035603 274 VDISSK-------KKKSNVTLSGLLNCIGGLWSTCGGERIIVFTTNHVDK------LDPALIRRGRMD-KHIEMPY 335 (431)
Q Consensus 274 ~~~~~~-------~~~~~~~~s~lL~~ldg~~~~~~~~~ivI~TTN~~~~------Ld~AllRpGRfd-~~I~~~~ 335 (431)
..+.+. +.-+......|++.++... ...-++|..++-.++. +++.|.. |+. ..|.+|+
T Consensus 66 ~~a~~gtL~l~~i~~L~~~~Q~~L~~~l~~~~--~~~~RlI~ss~~~l~~l~~~~~~~~~L~~--~l~~~~i~lPp 137 (138)
T PF14532_consen 66 EQAKGGTLYLKNIDRLSPEAQRRLLDLLKRQE--RSNVRLIASSSQDLEELVEEGRFSPDLYY--RLSQLEIHLPP 137 (138)
T ss_dssp HHCTTSEEEEECGCCS-HHHHHHHHHHHHHCT--TTTSEEEEEECC-CCCHHHHSTHHHHHHH--HCSTCEEEE--
T ss_pred HHcCCCEEEECChHHCCHHHHHHHHHHHHhcC--CCCeEEEEEeCCCHHHHhhccchhHHHHH--HhCCCEEeCCC
Confidence 544333 3445556666777776432 1122444444444433 5566655 443 4555553
No 211
>PRK06835 DNA replication protein DnaC; Validated
Probab=98.11 E-value=1.5e-05 Score=79.71 Aligned_cols=36 Identities=25% Similarity=0.381 Sum_probs=30.3
Q ss_pred ceeEEeCCCCCcHHHHHHHHHHHc---CCCeEEecccCc
Q 035603 228 RGYLLFGPPGTGKSTMIAAMANCL---NYDVYDLELTSV 263 (431)
Q Consensus 228 rg~LL~GPPGtGKTsla~aiA~~l---~~~i~~l~~~~~ 263 (431)
.+++|+||||||||+|+.|||+++ |..++.++..++
T Consensus 184 ~~Lll~G~~GtGKThLa~aIa~~l~~~g~~V~y~t~~~l 222 (329)
T PRK06835 184 ENLLFYGNTGTGKTFLSNCIAKELLDRGKSVIYRTADEL 222 (329)
T ss_pred CcEEEECCCCCcHHHHHHHHHHHHHHCCCeEEEEEHHHH
Confidence 789999999999999999999986 667776665543
No 212
>PRK15424 propionate catabolism operon regulatory protein PrpR; Provisional
Probab=98.09 E-value=7e-05 Score=79.63 Aligned_cols=65 Identities=15% Similarity=0.248 Sum_probs=54.0
Q ss_pred CCccccccChhhHHHHHHHHHHHHhCHHHHHHhCCCCCceeEEeCCCCCcHHHHHHHHHHH-----------cCCCeEEe
Q 035603 190 ATFDTLAMASKKKEAIKKDLIKFTEGKEYYAKIGKAWKRGYLLFGPPGTGKSTMIAAMANC-----------LNYDVYDL 258 (431)
Q Consensus 190 ~~f~~l~g~~~~k~~i~~~l~~~~~~~~~~~~~g~~~~rg~LL~GPPGtGKTsla~aiA~~-----------l~~~i~~l 258 (431)
.+|++++|.....+.+.+.+..+-.. ...+||+|+|||||+++|++|-+. .+.+|+.+
T Consensus 216 ~~f~~iiG~S~~m~~~~~~i~~~A~s-----------~~pVLI~GE~GTGKe~~A~~IH~~~~~~~~~~S~r~~~pfv~i 284 (538)
T PRK15424 216 YVLGDLLGQSPQMEQVRQTILLYARS-----------SAAVLIQGETGTGKELAAQAIHREYFARHDARQGKKSHPFVAV 284 (538)
T ss_pred cchhheeeCCHHHHHHHHHHHHHhCC-----------CCcEEEECCCCCCHHHHHHHHHHhhcccccccCccCCCCeEEe
Confidence 56899999999888888877655543 357999999999999999999876 45689999
Q ss_pred cccCcCC
Q 035603 259 ELTSVEN 265 (431)
Q Consensus 259 ~~~~~~~ 265 (431)
||..+..
T Consensus 285 nCaal~e 291 (538)
T PRK15424 285 NCGAIAE 291 (538)
T ss_pred ecccCCh
Confidence 9998753
No 213
>PRK07261 topology modulation protein; Provisional
Probab=98.09 E-value=8.6e-06 Score=73.91 Aligned_cols=100 Identities=19% Similarity=0.231 Sum_probs=62.8
Q ss_pred eEEeCCCCCcHHHHHHHHHHHcCCCeEEecccCcCChHHHHHHHHHhhhcccchhhHHHHHHHHhcCcccCCCCceEEEE
Q 035603 230 YLLFGPPGTGKSTMIAAMANCLNYDVYDLELTSVENNNELRSLLVDISSKKKKSNVTLSGLLNCIGGLWSTCGGERIIVF 309 (431)
Q Consensus 230 ~LL~GPPGtGKTsla~aiA~~l~~~i~~l~~~~~~~~~~l~~l~~~~~~~~~~~~~~~s~lL~~ldg~~~~~~~~~ivI~ 309 (431)
+++.||||+||||+++.|+..++++++.+|.-.....- . ......++..+..+.. ++ . .|+
T Consensus 3 i~i~G~~GsGKSTla~~l~~~~~~~~i~~D~~~~~~~~------------~---~~~~~~~~~~~~~~~~--~~-~-wIi 63 (171)
T PRK07261 3 IAIIGYSGSGKSTLARKLSQHYNCPVLHLDTLHFQPNW------------Q---ERDDDDMIADISNFLL--KH-D-WII 63 (171)
T ss_pred EEEEcCCCCCHHHHHHHHHHHhCCCeEecCCEEecccc------------c---cCCHHHHHHHHHHHHh--CC-C-EEE
Confidence 78999999999999999999999998887654322110 0 0011122222222211 12 3 444
Q ss_pred ecCCCCCCChhhhccCceeEEEEcCCCCHHHHHHHHHHhhc
Q 035603 310 TTNHVDKLDPALIRRGRMDKHIEMPYCCFEAFKVLAKNYLE 350 (431)
Q Consensus 310 TTN~~~~Ld~AllRpGRfd~~I~~~~p~~~~r~~i~~~~l~ 350 (431)
-.|....+-+..+. +.|..|.+.+|.......+++..+.
T Consensus 64 dg~~~~~~~~~~l~--~ad~vI~Ld~p~~~~~~R~lkR~~~ 102 (171)
T PRK07261 64 DGNYSWCLYEERMQ--EADQIIFLNFSRFNCLYRAFKRYLK 102 (171)
T ss_pred cCcchhhhHHHHHH--HCCEEEEEcCCHHHHHHHHHHHHHH
Confidence 44554434345555 7899999999988877777777653
No 214
>PRK05818 DNA polymerase III subunit delta'; Validated
Probab=98.07 E-value=0.00021 Score=68.74 Aligned_cols=104 Identities=13% Similarity=0.115 Sum_probs=70.2
Q ss_pred CCceeEEeCCCCCcHHHHHHHHHHHcCC----------------------CeEEecccC-cCChHHHHHHHHHhhhc---
Q 035603 226 WKRGYLLFGPPGTGKSTMIAAMANCLNY----------------------DVYDLELTS-VENNNELRSLLVDISSK--- 279 (431)
Q Consensus 226 ~~rg~LL~GPPGtGKTsla~aiA~~l~~----------------------~i~~l~~~~-~~~~~~l~~l~~~~~~~--- 279 (431)
.+.++||+||+|+||..+|.++|..+-+ +++.+.... .-..++++++.......
T Consensus 6 ~~HA~Lf~G~~G~G~~~lA~~~A~~llC~~~~~~Cg~C~sC~~i~~~~HPDl~~i~p~~~~I~id~ir~l~~~l~~~s~e 85 (261)
T PRK05818 6 KTHPLLLIERKGSFLKPFLYEYLTSIVCTKANGFCKTCESCLKILNGKYNDFYLIFDQKNPIKKEDALSIINKLNRPSVE 85 (261)
T ss_pred CCcceeeeCCCCCcHHHHHHHHHHHHcCCCCCCCCCCCHHHHHHhcCCCCCEEEecCCcccCCHHHHHHHHHHHccCchh
Confidence 4568999999999999999999987643 222221111 01234555554332211
Q ss_pred ------------ccchhhHHHHHHHHhcCcccCCCCceEEEEecCCCCCCChhhhccCceeEEEEcCCC
Q 035603 280 ------------KKKSNVTLSGLLNCIGGLWSTCGGERIIVFTTNHVDKLDPALIRRGRMDKHIEMPYC 336 (431)
Q Consensus 280 ------------~~~~~~~~s~lL~~ldg~~~~~~~~~ivI~TTN~~~~Ld~AllRpGRfd~~I~~~~p 336 (431)
+.-.....+.||..++. +..+.++|++|+.++.|.|.+++ |. ..+.++.+
T Consensus 86 ~~~~KV~II~~ae~m~~~AaNaLLK~LEE----Pp~~t~fiLit~~~~~lLpTI~S--RC-q~~~~~~~ 147 (261)
T PRK05818 86 SNGKKIYIIYGIEKLNKQSANSLLKLIEE----PPKNTYGIFTTRNENNILNTILS--RC-VQYVVLSK 147 (261)
T ss_pred cCCCEEEEeccHhhhCHHHHHHHHHhhcC----CCCCeEEEEEECChHhCchHhhh--he-eeeecCCh
Confidence 33345678889999884 55679999999999999999998 54 34556665
No 215
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A ....
Probab=98.07 E-value=3e-06 Score=71.63 Aligned_cols=31 Identities=35% Similarity=0.704 Sum_probs=28.6
Q ss_pred eEEeCCCCCcHHHHHHHHHHHcCCCeEEecc
Q 035603 230 YLLFGPPGTGKSTMIAAMANCLNYDVYDLEL 260 (431)
Q Consensus 230 ~LL~GPPGtGKTsla~aiA~~l~~~i~~l~~ 260 (431)
|++.||||+||||+|+.+|..+|+.++.++-
T Consensus 2 I~I~G~~gsGKST~a~~La~~~~~~~i~~d~ 32 (121)
T PF13207_consen 2 IIISGPPGSGKSTLAKELAERLGFPVISMDD 32 (121)
T ss_dssp EEEEESTTSSHHHHHHHHHHHHTCEEEEEHH
T ss_pred EEEECCCCCCHHHHHHHHHHHHCCeEEEecc
Confidence 7899999999999999999999999887765
No 216
>PRK08118 topology modulation protein; Reviewed
Probab=98.07 E-value=1.3e-05 Score=72.38 Aligned_cols=100 Identities=20% Similarity=0.133 Sum_probs=63.2
Q ss_pred eeEEeCCCCCcHHHHHHHHHHHcCCCeEEecccCcCChHHHHHHHHHhhhcccchhhHHHHHHHHhcCcccCCCCceEEE
Q 035603 229 GYLLFGPPGTGKSTMIAAMANCLNYDVYDLELTSVENNNELRSLLVDISSKKKKSNVTLSGLLNCIGGLWSTCGGERIIV 308 (431)
Q Consensus 229 g~LL~GPPGtGKTsla~aiA~~l~~~i~~l~~~~~~~~~~l~~l~~~~~~~~~~~~~~~s~lL~~ldg~~~~~~~~~ivI 308 (431)
-+++.||||+||||+|+.|++.++++++.+|.-.-... -...+......++..+- .. +. .|
T Consensus 3 rI~I~G~~GsGKSTlak~L~~~l~~~~~~lD~l~~~~~------------w~~~~~~~~~~~~~~~~---~~--~~--wV 63 (167)
T PRK08118 3 KIILIGSGGSGKSTLARQLGEKLNIPVHHLDALFWKPN------------WEGVPKEEQITVQNELV---KE--DE--WI 63 (167)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCCceecchhhcccC------------CcCCCHHHHHHHHHHHh---cC--CC--EE
Confidence 58999999999999999999999999988874321100 00011112222222211 11 11 44
Q ss_pred EecCCCCCCChhhhccCceeEEEEcCCCCHHHHHHHHHHhhc
Q 035603 309 FTTNHVDKLDPALIRRGRMDKHIEMPYCCFEAFKVLAKNYLE 350 (431)
Q Consensus 309 ~TTN~~~~Ld~AllRpGRfd~~I~~~~p~~~~r~~i~~~~l~ 350 (431)
+-.|....++..+- +.|..|.+..|...-...+++..+.
T Consensus 64 idG~~~~~~~~~l~---~~d~vi~Ld~p~~~~~~R~~~R~~~ 102 (167)
T PRK08118 64 IDGNYGGTMDIRLN---AADTIIFLDIPRTICLYRAFKRRVQ 102 (167)
T ss_pred EeCCcchHHHHHHH---hCCEEEEEeCCHHHHHHHHHHHHHH
Confidence 55566656665543 6899999999988777777777653
No 217
>PRK07132 DNA polymerase III subunit delta'; Validated
Probab=98.06 E-value=0.00025 Score=70.08 Aligned_cols=114 Identities=17% Similarity=0.180 Sum_probs=80.5
Q ss_pred CCceeEEeCCCCCcHHHHHHHHHHHcCC-------------CeEEec--ccCcCChHHHHHHHHHhhhc-----------
Q 035603 226 WKRGYLLFGPPGTGKSTMIAAMANCLNY-------------DVYDLE--LTSVENNNELRSLLVDISSK----------- 279 (431)
Q Consensus 226 ~~rg~LL~GPPGtGKTsla~aiA~~l~~-------------~i~~l~--~~~~~~~~~l~~l~~~~~~~----------- 279 (431)
.+..|||+|++|.||+.++.++|+.+-+ ++..++ ...+ ..++++.+.....-.
T Consensus 17 l~haYLf~G~eg~gk~~~a~~~a~~l~c~~~~~~~~~~~p~n~~~~d~~g~~i-~vd~Ir~l~~~~~~~~~~~~~~KvvI 95 (299)
T PRK07132 17 ISHSFLLKSNYNEDIDEKILYFLNKFNNLQITNLNEQELPANIILFDIFDKDL-SKSEFLSAINKLYFSSFVQSQKKILI 95 (299)
T ss_pred CCeEEEEeCCCCCCHHHHHHHHHHHHcCcCCCCCCCCCCCcceEEeccCCCcC-CHHHHHHHHHHhccCCcccCCceEEE
Confidence 3468999999999999999999998722 233344 2221 235666665443221
Q ss_pred ----ccchhhHHHHHHHHhcCcccCCCCceEEEEecCCCCCCChhhhccCceeEEEEcCCCCHHHHHHHHHH
Q 035603 280 ----KKKSNVTLSGLLNCIGGLWSTCGGERIIVFTTNHVDKLDPALIRRGRMDKHIEMPYCCFEAFKVLAKN 347 (431)
Q Consensus 280 ----~~~~~~~~s~lL~~ldg~~~~~~~~~ivI~TTN~~~~Ld~AllRpGRfd~~I~~~~p~~~~r~~i~~~ 347 (431)
+.......+.||..|+. +++.+++|++|+.++.|-|++..+| ..+++++++.++....+..
T Consensus 96 I~~~e~m~~~a~NaLLK~LEE----Pp~~t~~il~~~~~~kll~TI~SRc---~~~~f~~l~~~~l~~~l~~ 160 (299)
T PRK07132 96 IKNIEKTSNSLLNALLKTIEE----PPKDTYFLLTTKNINKVLPTIVSRC---QVFNVKEPDQQKILAKLLS 160 (299)
T ss_pred EecccccCHHHHHHHHHHhhC----CCCCeEEEEEeCChHhChHHHHhCe---EEEECCCCCHHHHHHHHHH
Confidence 22345567789999985 4556888888889999999998855 6799999988877765544
No 218
>COG1220 HslU ATP-dependent protease HslVU (ClpYQ), ATPase subunit [Posttranslational modification, protein turnover, chaperones]
Probab=98.05 E-value=8.2e-05 Score=73.19 Aligned_cols=70 Identities=17% Similarity=0.231 Sum_probs=49.0
Q ss_pred ccccChhhHHHHHHHHHHHHhCHHHHHHhC-CCCCceeEEeCCCCCcHHHHHHHHHHHcCCCeEEecccCc
Q 035603 194 TLAMASKKKEAIKKDLIKFTEGKEYYAKIG-KAWKRGYLLFGPPGTGKSTMIAAMANCLNYDVYDLELTSV 263 (431)
Q Consensus 194 ~l~g~~~~k~~i~~~l~~~~~~~~~~~~~g-~~~~rg~LL~GPPGtGKTsla~aiA~~l~~~i~~l~~~~~ 263 (431)
-|+|+++.|+.+-=.+..-......-..+. --.|+.+|..||.|+|||-+||.+|+..+.||+.+..+..
T Consensus 16 yIIGQ~~AKkaVAIALRNR~RR~qL~~~lr~EV~PKNILMIGpTGVGKTEIARRLAkl~~aPFiKVEATKf 86 (444)
T COG1220 16 YIIGQDEAKKAVAIALRNRWRRMQLEEELRDEVTPKNILMIGPTGVGKTEIARRLAKLAGAPFIKVEATKF 86 (444)
T ss_pred HhcCcHHHHHHHHHHHHHHHHHHhcCHHHhhccCccceEEECCCCCcHHHHHHHHHHHhCCCeEEEEeeee
Confidence 368888888877544433222111111110 1136899999999999999999999999999999987643
No 219
>PRK05917 DNA polymerase III subunit delta'; Validated
Probab=98.04 E-value=7.3e-05 Score=73.25 Aligned_cols=104 Identities=15% Similarity=0.201 Sum_probs=72.3
Q ss_pred CCceeEEeCCCCCcHHHHHHHHHHHcCC----------------CeEEecccCc---CChHHHHHHHHHhhhc-------
Q 035603 226 WKRGYLLFGPPGTGKSTMIAAMANCLNY----------------DVYDLELTSV---ENNNELRSLLVDISSK------- 279 (431)
Q Consensus 226 ~~rg~LL~GPPGtGKTsla~aiA~~l~~----------------~i~~l~~~~~---~~~~~l~~l~~~~~~~------- 279 (431)
.+.+|||+||+|+||+.+|.++|..+-+ +++.+....- -..+.++.+......+
T Consensus 18 l~HAyLf~G~~G~Gk~~lA~~~A~~llC~~~~~~c~~~~~~~HPD~~~i~p~~~~~~I~idqiR~l~~~~~~~p~e~~~k 97 (290)
T PRK05917 18 VPSAIILHGQDLSNLSARAYELASLILKETSPEAAYKISQKIHPDIHEFSPQGKGRLHSIETPRAIKKQIWIHPYESPYK 97 (290)
T ss_pred cCeeEeeECCCCCcHHHHHHHHHHHHhCCCCccHHHHHhcCCCCCEEEEecCCCCCcCcHHHHHHHHHHHhhCccCCCce
Confidence 3458999999999999999999997754 2333322111 1344566655443322
Q ss_pred -------ccchhhHHHHHHHHhcCcccCCCCceEEEEecCCCCCCChhhhccCceeEEEEcCCC
Q 035603 280 -------KKKSNVTLSGLLNCIGGLWSTCGGERIIVFTTNHVDKLDPALIRRGRMDKHIEMPYC 336 (431)
Q Consensus 280 -------~~~~~~~~s~lL~~ldg~~~~~~~~~ivI~TTN~~~~Ld~AllRpGRfd~~I~~~~p 336 (431)
+.-.....+.||..|+. +.+++++|..|+.++.|.|.+++ |. ..+.|+.+
T Consensus 98 v~ii~~ad~mt~~AaNaLLK~LEE----Pp~~~~fiL~~~~~~~ll~TI~S--Rc-q~~~~~~~ 154 (290)
T PRK05917 98 IYIIHEADRMTLDAISAFLKVLED----PPQHGVIILTSAKPQRLPPTIRS--RS-LSIHIPME 154 (290)
T ss_pred EEEEechhhcCHHHHHHHHHHhhc----CCCCeEEEEEeCChhhCcHHHHh--cc-eEEEccch
Confidence 33455678899999984 45669999999999999999988 44 45666644
No 220
>TIGR02329 propionate_PrpR propionate catabolism operon regulatory protein PrpR. At least five distinct pathways exists for the catabolism of propionate by way of propionyl-CoA. Members of this family represent the transcriptional regulatory protein PrpR, whose gene is found in most cases divergently transcribed from an operon for the methylcitric acid cycle of propionate catabolism. 2-methylcitric acid, a catabolite by this pathway, is a coactivator of PrpR.
Probab=98.03 E-value=5.6e-05 Score=80.31 Aligned_cols=150 Identities=18% Similarity=0.198 Sum_probs=93.1
Q ss_pred cCCCCccccccChhhHHHHHHHHHHHHhCHHHHHHhCCCCCceeEEeCCCCCcHHHHHHHHHHHc---CCCeEEecccCc
Q 035603 187 EHPATFDTLAMASKKKEAIKKDLIKFTEGKEYYAKIGKAWKRGYLLFGPPGTGKSTMIAAMANCL---NYDVYDLELTSV 263 (431)
Q Consensus 187 ~~p~~f~~l~g~~~~k~~i~~~l~~~~~~~~~~~~~g~~~~rg~LL~GPPGtGKTsla~aiA~~l---~~~i~~l~~~~~ 263 (431)
....+|++++|.....+.+.+.+..+-.. ...+||+|+|||||+++|++|-+.. +.+|+.+||..+
T Consensus 206 ~~~~~f~~iiG~S~~m~~~~~~i~~~A~~-----------~~pVLI~GE~GTGKe~lA~~IH~~S~r~~~pfv~inC~~l 274 (526)
T TIGR02329 206 RTRYRLDDLLGASAPMEQVRALVRLYARS-----------DATVLILGESGTGKELVAQAIHQLSGRRDFPFVAINCGAI 274 (526)
T ss_pred ccccchhheeeCCHHHHHHHHHHHHHhCC-----------CCcEEEECCCCcCHHHHHHHHHHhcCcCCCCEEEeccccC
Confidence 34467999999999888888877665543 3579999999999999999998764 568999999987
Q ss_pred CChHHHH-HHHHHh-------------------hhc-------ccchhhHHHHHHHHhcCcc-cCCC------CceEEEE
Q 035603 264 ENNNELR-SLLVDI-------------------SSK-------KKKSNVTLSGLLNCIGGLW-STCG------GERIIVF 309 (431)
Q Consensus 264 ~~~~~l~-~l~~~~-------------------~~~-------~~~~~~~~s~lL~~ldg~~-~~~~------~~~ivI~ 309 (431)
.. ..+. .+|... .+. +.-+......|+..|+.-. ...| -++-+|+
T Consensus 275 ~e-~lleseLFG~~~gaftga~~~~~~Gl~e~A~gGTLfLdeI~~Lp~~~Q~~Ll~~L~~~~~~r~g~~~~~~~dvRiIa 353 (526)
T TIGR02329 275 AE-SLLEAELFGYEEGAFTGARRGGRTGLIEAAHRGTLFLDEIGEMPLPLQTRLLRVLEEREVVRVGGTEPVPVDVRVVA 353 (526)
T ss_pred Ch-hHHHHHhcCCcccccccccccccccchhhcCCceEEecChHhCCHHHHHHHHHHHhcCcEEecCCCceeeecceEEe
Confidence 53 2233 233211 000 2223445667777775321 0001 1234777
Q ss_pred ecCCC--C-----CCChhhhccCcee-EEEEcCCCC--HHHHHHHHHHhhc
Q 035603 310 TTNHV--D-----KLDPALIRRGRMD-KHIEMPYCC--FEAFKVLAKNYLE 350 (431)
Q Consensus 310 TTN~~--~-----~Ld~AllRpGRfd-~~I~~~~p~--~~~r~~i~~~~l~ 350 (431)
|||.. + .+.+.|.. |+. ..|++|+.. .+....|+.+|+.
T Consensus 354 at~~~l~~~v~~g~fr~dL~~--rL~~~~I~lPPLReR~eDI~~L~~~fl~ 402 (526)
T TIGR02329 354 ATHCALTTAVQQGRFRRDLFY--RLSILRIALPPLRERPGDILPLAAEYLV 402 (526)
T ss_pred ccCCCHHHHhhhcchhHHHHH--hcCCcEEeCCCchhchhHHHHHHHHHHH
Confidence 77653 1 22333433 453 567777764 3456667777765
No 221
>COG0593 DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair]
Probab=98.02 E-value=3.6e-05 Score=78.52 Aligned_cols=154 Identities=15% Similarity=0.174 Sum_probs=84.8
Q ss_pred ccCCCCccccccChhhHHHHHHHHHHHHhCHHHHHHhCCCCCceeEEeCCCCCcHHHHHHHHHHHcCC-----CeEEecc
Q 035603 186 FEHPATFDTLAMASKKKEAIKKDLIKFTEGKEYYAKIGKAWKRGYLLFGPPGTGKSTMIAAMANCLNY-----DVYDLEL 260 (431)
Q Consensus 186 ~~~p~~f~~l~g~~~~k~~i~~~l~~~~~~~~~~~~~g~~~~rg~LL~GPPGtGKTsla~aiA~~l~~-----~i~~l~~ 260 (431)
..+..+|++.+..+.-.-.. .....+-..+ |. ....++||||.|.|||.|++|++++... .++.++.
T Consensus 80 l~~~ytFdnFv~g~~N~~A~-aa~~~va~~~------g~-~~nplfi~G~~GlGKTHLl~Aign~~~~~~~~a~v~y~~s 151 (408)
T COG0593 80 LNPKYTFDNFVVGPSNRLAY-AAAKAVAENP------GG-AYNPLFIYGGVGLGKTHLLQAIGNEALANGPNARVVYLTS 151 (408)
T ss_pred CCCCCchhheeeCCchHHHH-HHHHHHHhcc------CC-cCCcEEEECCCCCCHHHHHHHHHHHHHhhCCCceEEeccH
Confidence 33447788876554433222 2222222222 22 3357999999999999999999997643 2333333
Q ss_pred cCcC----------ChHHHHHHHHHhh-------hcccchhhHHHHHHHHhcCcccCCCCceEEEEecCCCCC---CChh
Q 035603 261 TSVE----------NNNELRSLLVDIS-------SKKKKSNVTLSGLLNCIGGLWSTCGGERIIVFTTNHVDK---LDPA 320 (431)
Q Consensus 261 ~~~~----------~~~~l~~l~~~~~-------~~~~~~~~~~s~lL~~ldg~~~~~~~~~ivI~TTN~~~~---Ld~A 320 (431)
.... .-..+++.+ ... ..-.....+..+|.+.+..+.... +.||+.+-..|.. ++|.
T Consensus 152 e~f~~~~v~a~~~~~~~~Fk~~y-~~dlllIDDiq~l~gk~~~qeefFh~FN~l~~~~--kqIvltsdr~P~~l~~~~~r 228 (408)
T COG0593 152 EDFTNDFVKALRDNEMEKFKEKY-SLDLLLIDDIQFLAGKERTQEEFFHTFNALLENG--KQIVLTSDRPPKELNGLEDR 228 (408)
T ss_pred HHHHHHHHHHHHhhhHHHHHHhh-ccCeeeechHhHhcCChhHHHHHHHHHHHHHhcC--CEEEEEcCCCchhhccccHH
Confidence 2210 001111111 100 001122233445555555443322 2555555555654 4588
Q ss_pred hhccCce--eEEEEcCCCCHHHHHHHHHHhhchh
Q 035603 321 LIRRGRM--DKHIEMPYCCFEAFKVLAKNYLEIE 352 (431)
Q Consensus 321 llRpGRf--d~~I~~~~p~~~~r~~i~~~~l~~~ 352 (431)
|.+ || ...+++..|+.+.|..++.......
T Consensus 229 L~S--R~~~Gl~~~I~~Pd~e~r~aiL~kka~~~ 260 (408)
T COG0593 229 LRS--RLEWGLVVEIEPPDDETRLAILRKKAEDR 260 (408)
T ss_pred HHH--HHhceeEEeeCCCCHHHHHHHHHHHHHhc
Confidence 888 65 4678899999999999998865433
No 222
>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif. They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.
Probab=98.00 E-value=4e-06 Score=76.64 Aligned_cols=37 Identities=35% Similarity=0.679 Sum_probs=27.9
Q ss_pred CceeEEeCCCCCcHHHHHHHHHHHc---CCCeEEecccCc
Q 035603 227 KRGYLLFGPPGTGKSTMIAAMANCL---NYDVYDLELTSV 263 (431)
Q Consensus 227 ~rg~LL~GPPGtGKTsla~aiA~~l---~~~i~~l~~~~~ 263 (431)
+.+++|+||||||||.||.|||+++ |..+..++..++
T Consensus 47 ~~~l~l~G~~G~GKThLa~ai~~~~~~~g~~v~f~~~~~L 86 (178)
T PF01695_consen 47 GENLILYGPPGTGKTHLAVAIANEAIRKGYSVLFITASDL 86 (178)
T ss_dssp --EEEEEESTTSSHHHHHHHHHHHHHHTT--EEEEEHHHH
T ss_pred CeEEEEEhhHhHHHHHHHHHHHHHhccCCcceeEeecCce
Confidence 5799999999999999999999864 677777665543
No 223
>PRK05022 anaerobic nitric oxide reductase transcription regulator; Provisional
Probab=98.00 E-value=0.00011 Score=78.00 Aligned_cols=146 Identities=15% Similarity=0.155 Sum_probs=90.0
Q ss_pred CccccccChhhHHHHHHHHHHHHhCHHHHHHhCCCCCceeEEeCCCCCcHHHHHHHHHHHc---CCCeEEecccCcCChH
Q 035603 191 TFDTLAMASKKKEAIKKDLIKFTEGKEYYAKIGKAWKRGYLLFGPPGTGKSTMIAAMANCL---NYDVYDLELTSVENNN 267 (431)
Q Consensus 191 ~f~~l~g~~~~k~~i~~~l~~~~~~~~~~~~~g~~~~rg~LL~GPPGtGKTsla~aiA~~l---~~~i~~l~~~~~~~~~ 267 (431)
.+++++|.....+.+.+.+...-.. +..+||+|++||||+++|++|.... +.+++.+||..+.. .
T Consensus 185 ~~~~iig~s~~~~~~~~~i~~~a~~-----------~~pVlI~Ge~GtGK~~~A~~ih~~s~r~~~p~v~v~c~~~~~-~ 252 (509)
T PRK05022 185 KEGEMIGQSPAMQQLKKEIEVVAAS-----------DLNVLILGETGVGKELVARAIHAASPRADKPLVYLNCAALPE-S 252 (509)
T ss_pred cCCceeecCHHHHHHHHHHHHHhCC-----------CCcEEEECCCCccHHHHHHHHHHhCCcCCCCeEEEEcccCCh-H
Confidence 5688999999888888877664432 4589999999999999999998874 46899999998753 2
Q ss_pred HHH-HHHHHhh------------------hc-------ccchhhHHHHHHHHhcCcc-cC------CCCceEEEEecCCC
Q 035603 268 ELR-SLLVDIS------------------SK-------KKKSNVTLSGLLNCIGGLW-ST------CGGERIIVFTTNHV 314 (431)
Q Consensus 268 ~l~-~l~~~~~------------------~~-------~~~~~~~~s~lL~~ldg~~-~~------~~~~~ivI~TTN~~ 314 (431)
.+. .+|.... +. +.-.......|++.++.-. .. ...++-||+|||..
T Consensus 253 ~~e~~lfG~~~g~~~ga~~~~~g~~~~a~gGtL~ldeI~~L~~~~Q~~Ll~~l~~~~~~~~g~~~~~~~~~RiI~~t~~~ 332 (509)
T PRK05022 253 LAESELFGHVKGAFTGAISNRSGKFELADGGTLFLDEIGELPLALQAKLLRVLQYGEIQRVGSDRSLRVDVRVIAATNRD 332 (509)
T ss_pred HHHHHhcCccccccCCCcccCCcchhhcCCCEEEecChhhCCHHHHHHHHHHHhcCCEeeCCCCcceecceEEEEecCCC
Confidence 232 3333211 00 2223445567777775321 00 01134677777753
Q ss_pred -------CCCChhhhccCcee-EEEEcCCCC--HHHHHHHHHHhhc
Q 035603 315 -------DKLDPALIRRGRMD-KHIEMPYCC--FEAFKVLAKNYLE 350 (431)
Q Consensus 315 -------~~Ld~AllRpGRfd-~~I~~~~p~--~~~r~~i~~~~l~ 350 (431)
..+.+.|.. |+. ..|++|+.. .+..-.++.+|+.
T Consensus 333 l~~~~~~~~f~~dL~~--rl~~~~i~lPpLreR~eDI~~L~~~fl~ 376 (509)
T PRK05022 333 LREEVRAGRFRADLYH--RLSVFPLSVPPLRERGDDVLLLAGYFLE 376 (509)
T ss_pred HHHHHHcCCccHHHHh--cccccEeeCCCchhchhhHHHHHHHHHH
Confidence 234445544 443 346666653 2445556666654
No 224
>PRK00131 aroK shikimate kinase; Reviewed
Probab=97.98 E-value=7.5e-06 Score=73.48 Aligned_cols=35 Identities=34% Similarity=0.423 Sum_probs=31.5
Q ss_pred CCCceeEEeCCCCCcHHHHHHHHHHHcCCCeEEec
Q 035603 225 AWKRGYLLFGPPGTGKSTMIAAMANCLNYDVYDLE 259 (431)
Q Consensus 225 ~~~rg~LL~GPPGtGKTsla~aiA~~l~~~i~~l~ 259 (431)
+.+..++|+||||||||++++++|..+++++++.+
T Consensus 2 ~~~~~i~l~G~~GsGKstla~~La~~l~~~~~d~d 36 (175)
T PRK00131 2 LKGPNIVLIGFMGAGKSTIGRLLAKRLGYDFIDTD 36 (175)
T ss_pred CCCCeEEEEcCCCCCHHHHHHHHHHHhCCCEEECh
Confidence 35678999999999999999999999999999765
No 225
>PRK09862 putative ATP-dependent protease; Provisional
Probab=97.98 E-value=2.8e-05 Score=81.86 Aligned_cols=133 Identities=20% Similarity=0.232 Sum_probs=79.4
Q ss_pred CCccccccChhhHHHHHHHHHHHHhCHHHHHHhCCCCCceeEEeCCCCCcHHHHHHHHHHHcCCCe--EEecccCcC---
Q 035603 190 ATFDTLAMASKKKEAIKKDLIKFTEGKEYYAKIGKAWKRGYLLFGPPGTGKSTMIAAMANCLNYDV--YDLELTSVE--- 264 (431)
Q Consensus 190 ~~f~~l~g~~~~k~~i~~~l~~~~~~~~~~~~~g~~~~rg~LL~GPPGtGKTsla~aiA~~l~~~i--~~l~~~~~~--- 264 (431)
..|.++.|...+++.+.- -......++|+||||||||++++.|++.+.-.- ..++.+.+.
T Consensus 188 ~d~~~v~Gq~~~~~al~l---------------aa~~G~~llliG~~GsGKTtLak~L~gllpp~~g~e~le~~~i~s~~ 252 (506)
T PRK09862 188 HDLSDVIGQEQGKRGLEI---------------TAAGGHNLLLIGPPGTGKTMLASRINGLLPDLSNEEALESAAILSLV 252 (506)
T ss_pred cCeEEEECcHHHHhhhhe---------------eccCCcEEEEECCCCCcHHHHHHHHhccCCCCCCcEEEecchhhhhh
Confidence 367777777665554321 122346799999999999999999998654210 011111110
Q ss_pred ------------------ChHHHHHHHHH-----------hhhc-------ccchhhHHHHHHHHhcC-cc--cC-----
Q 035603 265 ------------------NNNELRSLLVD-----------ISSK-------KKKSNVTLSGLLNCIGG-LW--ST----- 300 (431)
Q Consensus 265 ------------------~~~~l~~l~~~-----------~~~~-------~~~~~~~~s~lL~~ldg-~~--~~----- 300 (431)
.......++.. +.+. .......+..|++.|+. .. +.
T Consensus 253 g~~~~~~~~~~rPfr~ph~~~s~~~l~GGg~~~~pG~l~~A~gGvLfLDEi~e~~~~~~~~L~~~LE~g~v~I~r~g~~~ 332 (506)
T PRK09862 253 NAESVQKQWRQRPFRSPHHSASLTAMVGGGAIPGPGEISLAHNGVLFLDELPEFERRTLDALREPIESGQIHLSRTRAKI 332 (506)
T ss_pred ccccccCCcCCCCccCCCccchHHHHhCCCceehhhHhhhccCCEEecCCchhCCHHHHHHHHHHHHcCcEEEecCCcce
Confidence 00011112211 1111 33455677888887732 21 11
Q ss_pred -CCCceEEEEecCCCC---------------------CCChhhhccCceeEEEEcCCCCHH
Q 035603 301 -CGGERIIVFTTNHVD---------------------KLDPALIRRGRMDKHIEMPYCCFE 339 (431)
Q Consensus 301 -~~~~~ivI~TTN~~~---------------------~Ld~AllRpGRfd~~I~~~~p~~~ 339 (431)
...++.+|+|+|... +|..+++. |||.++.+++|+.+
T Consensus 333 ~~pa~f~lIAa~NP~pcG~~~~~~c~c~~~~~~~Y~~~ls~plLD--RfdL~v~v~~~~~~ 391 (506)
T PRK09862 333 TYPARFQLVAAMNPSPTGHYQGNHNRCTPEQTLRYLNRLSGPFLD--RFDLSLEIPLPPPG 391 (506)
T ss_pred eccCCEEEEEeecCccceecCCCCCCcCHHHHHHHHhhCCHhHHh--hccEEEEeCCCCHH
Confidence 123478999999653 58889999 99999999999866
No 226
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=97.97 E-value=0.00054 Score=66.15 Aligned_cols=24 Identities=33% Similarity=0.505 Sum_probs=22.3
Q ss_pred eeEEeCCCCCcHHHHHHHHHHHcC
Q 035603 229 GYLLFGPPGTGKSTMIAAMANCLN 252 (431)
Q Consensus 229 g~LL~GPPGtGKTsla~aiA~~l~ 252 (431)
-++|+||||+|||++++.+++.+.
T Consensus 45 ~~~l~G~~G~GKTtl~~~l~~~l~ 68 (269)
T TIGR03015 45 FILITGEVGAGKTTLIRNLLKRLD 68 (269)
T ss_pred EEEEEcCCCCCHHHHHHHHHHhcC
Confidence 478999999999999999999986
No 227
>COG5271 MDN1 AAA ATPase containing von Willebrand factor type A (vWA) domain [General function prediction only]
Probab=97.97 E-value=4e-05 Score=87.33 Aligned_cols=120 Identities=19% Similarity=0.242 Sum_probs=85.5
Q ss_pred CCceeEEeCCCCCcHHHHHHHHHHHcCCCeEEecccCcCChHHHHHHHHHhhhc--------------------------
Q 035603 226 WKRGYLLFGPPGTGKSTMIAAMANCLNYDVYDLELTSVENNNELRSLLVDISSK-------------------------- 279 (431)
Q Consensus 226 ~~rg~LL~GPPGtGKTsla~aiA~~l~~~i~~l~~~~~~~~~~l~~l~~~~~~~-------------------------- 279 (431)
..+++||.|-||+|||+|+.|+|+..|-.++.+|+++- .+|..+|.....-
T Consensus 1542 v~kpilLEGsPGVGKTSlItaLAr~tG~kliRINLSeQ---TdL~DLfGsd~Pve~~Gef~w~dapfL~amr~G~WVlLD 1618 (4600)
T COG5271 1542 VGKPILLEGSPGVGKTSLITALARKTGKKLIRINLSEQ---TDLCDLFGSDLPVEEGGEFRWMDAPFLHAMRDGGWVLLD 1618 (4600)
T ss_pred cCCceeecCCCCccHHHHHHHHHHHhcCceEEeecccc---chHHHHhCCCCCcccCceeEecccHHHHHhhcCCEEEee
Confidence 35789999999999999999999999999999999873 3455555332111
Q ss_pred --ccchhhHHHHHHHHhcCcc----------cCCCCceEEEEecCCC------CCCChhhhccCceeEEEEcCCCCHHHH
Q 035603 280 --KKKSNVTLSGLLNCIGGLW----------STCGGERIIVFTTNHV------DKLDPALIRRGRMDKHIEMPYCCFEAF 341 (431)
Q Consensus 280 --~~~~~~~~s~lL~~ldg~~----------~~~~~~~ivI~TTN~~------~~Ld~AllRpGRfd~~I~~~~p~~~~r 341 (431)
+-.++.++.+|-.++|--. -.+..+..|++|-|.- ..||..++. ||. .|.+...+.+..
T Consensus 1619 EiNLaSQSVlEGLNacLDhR~eayIPEld~~f~~HpnfrVFAaqNPq~qggGRKgLPkSF~n--RFs-vV~~d~lt~dDi 1695 (4600)
T COG5271 1619 EINLASQSVLEGLNACLDHRREAYIPELDKTFDVHPNFRVFAAQNPQDQGGGRKGLPKSFLN--RFS-VVKMDGLTTDDI 1695 (4600)
T ss_pred hhhhhHHHHHHHHHHHHhhccccccccccceeeccCCeeeeeecCchhcCCCcccCCHHHhh--hhh-eEEecccccchH
Confidence 2345566667666665321 1234456777777754 369999999 884 678888888777
Q ss_pred HHHHHHhhch
Q 035603 342 KVLAKNYLEI 351 (431)
Q Consensus 342 ~~i~~~~l~~ 351 (431)
..|++..++.
T Consensus 1696 ~~Ia~~~yp~ 1705 (4600)
T COG5271 1696 THIANKMYPQ 1705 (4600)
T ss_pred HHHHHhhCCc
Confidence 7777776653
No 228
>TIGR00368 Mg chelatase-related protein. The N-terminal end matches very strongly a pfam Mg_chelatase domain.
Probab=97.96 E-value=4.4e-05 Score=80.50 Aligned_cols=47 Identities=28% Similarity=0.491 Sum_probs=36.4
Q ss_pred CCccccccChhhHHHHHHHHHHHHhCHHHHHHhCCCCCceeEEeCCCCCcHHHHHHHHHHHc
Q 035603 190 ATFDTLAMASKKKEAIKKDLIKFTEGKEYYAKIGKAWKRGYLLFGPPGTGKSTMIAAMANCL 251 (431)
Q Consensus 190 ~~f~~l~g~~~~k~~i~~~l~~~~~~~~~~~~~g~~~~rg~LL~GPPGtGKTsla~aiA~~l 251 (431)
..|++|.|.+.+++.+.-.+ .....++|.||||||||+++++|+..+
T Consensus 189 ~d~~dv~Gq~~~~~al~~aa---------------~~g~~vlliG~pGsGKTtlar~l~~ll 235 (499)
T TIGR00368 189 LDLKDIKGQQHAKRALEIAA---------------AGGHNLLLFGPPGSGKTMLASRLQGIL 235 (499)
T ss_pred CCHHHhcCcHHHHhhhhhhc---------------cCCCEEEEEecCCCCHHHHHHHHhccc
Confidence 47999999988876653221 223579999999999999999999754
No 229
>COG1219 ClpX ATP-dependent protease Clp, ATPase subunit [Posttranslational modification, protein turnover, chaperones]
Probab=97.90 E-value=4.9e-05 Score=74.23 Aligned_cols=37 Identities=32% Similarity=0.520 Sum_probs=34.4
Q ss_pred CceeEEeCCCCCcHHHHHHHHHHHcCCCeEEecccCc
Q 035603 227 KRGYLLFGPPGTGKSTMIAAMANCLNYDVYDLELTSV 263 (431)
Q Consensus 227 ~rg~LL~GPPGtGKTsla~aiA~~l~~~i~~l~~~~~ 263 (431)
+..+||.||.|||||.||+.+|+.|+.||..-|++.+
T Consensus 97 KSNILLiGPTGsGKTlLAqTLAk~LnVPFaiADATtL 133 (408)
T COG1219 97 KSNILLIGPTGSGKTLLAQTLAKILNVPFAIADATTL 133 (408)
T ss_pred eccEEEECCCCCcHHHHHHHHHHHhCCCeeeccccch
Confidence 3469999999999999999999999999999998887
No 230
>PF08298 AAA_PrkA: PrkA AAA domain; InterPro: IPR013153 This is entry is found at the N terminus of PrkA proteins - bacterial and archaeal serine kinases approximately 630 residues in length. PrkA possesses the A-motif of nucleotide-binding proteins and exhibits distant homology to eukaryotic protein kinases []. Note that many of these are hypothetical.
Probab=97.89 E-value=0.00017 Score=71.96 Aligned_cols=62 Identities=27% Similarity=0.423 Sum_probs=44.6
Q ss_pred cc-ccccChhhHHHHHHHHHHHHhCHHHHHHhCCCCCceeEEeCCCCCcHHHHHHHHHHHcC-CCeEEecc
Q 035603 192 FD-TLAMASKKKEAIKKDLIKFTEGKEYYAKIGKAWKRGYLLFGPPGTGKSTMIAAMANCLN-YDVYDLEL 260 (431)
Q Consensus 192 f~-~l~g~~~~k~~i~~~l~~~~~~~~~~~~~g~~~~rg~LL~GPPGtGKTsla~aiA~~l~-~~i~~l~~ 260 (431)
|+ ++.|.++..++|.+.+..--.+ +-.-++-++|.||+|+|||+|++.+.+.+. +++|.+..
T Consensus 59 f~~~~~G~~~~i~~lV~~fk~AA~g-------~~~~krIl~L~GPvg~GKSsl~~~Lk~~le~y~~Y~l~~ 122 (358)
T PF08298_consen 59 FEDEFYGMEETIERLVNYFKSAAQG-------LEERKRILLLLGPVGGGKSSLAELLKRGLEEYPIYTLKG 122 (358)
T ss_pred ccccccCcHHHHHHHHHHHHHHHhc-------cCccceEEEEECCCCCCHHHHHHHHHHHhheEEEEEecC
Confidence 55 7899999888887755433321 123356788999999999999999988663 46666533
No 231
>PRK15455 PrkA family serine protein kinase; Provisional
Probab=97.89 E-value=1.6e-05 Score=83.76 Aligned_cols=66 Identities=21% Similarity=0.332 Sum_probs=49.5
Q ss_pred CCCCccccccChhhHHHHHHHHHHHHhCHHHHHHhCCCCCceeEEeCCCCCcHHHHHHHHHHHcC-CCeEEecc
Q 035603 188 HPATFDTLAMASKKKEAIKKDLIKFTEGKEYYAKIGKAWKRGYLLFGPPGTGKSTMIAAMANCLN-YDVYDLEL 260 (431)
Q Consensus 188 ~p~~f~~l~g~~~~k~~i~~~l~~~~~~~~~~~~~g~~~~rg~LL~GPPGtGKTsla~aiA~~l~-~~i~~l~~ 260 (431)
...-|+++.|.+++++.|.+.+..-... ++ ..++-++|.||||+|||||+++||..+. +++|.+..
T Consensus 71 ry~fF~d~yGlee~ieriv~~l~~Aa~g------l~-~~~~IL~LvGPpG~GKSsLa~~la~~le~~~~Y~~kg 137 (644)
T PRK15455 71 RYPAFEEFYGMEEAIEQIVSYFRHAAQG------LE-EKKQILYLLGPVGGGKSSLAERLKSLMERVPIYVLKA 137 (644)
T ss_pred cccchhcccCcHHHHHHHHHHHHHHHHh------cC-CCCceEEEecCCCCCchHHHHHHHHHHHhCcceeecC
Confidence 3456999999999999998776544332 11 2345788999999999999999998763 46776644
No 232
>KOG1051 consensus Chaperone HSP104 and related ATP-dependent Clp proteases [Posttranslational modification, protein turnover, chaperones]
Probab=97.87 E-value=0.00049 Score=76.23 Aligned_cols=115 Identities=19% Similarity=0.278 Sum_probs=74.5
Q ss_pred cccccChhhHHHHHHHHHHHHhCHHHHHHhCC-CCCceeEEeCCCCCcHHHHHHHHHHHc---CCCeEEecccCcCC---
Q 035603 193 DTLAMASKKKEAIKKDLIKFTEGKEYYAKIGK-AWKRGYLLFGPPGTGKSTMIAAMANCL---NYDVYDLELTSVEN--- 265 (431)
Q Consensus 193 ~~l~g~~~~k~~i~~~l~~~~~~~~~~~~~g~-~~~rg~LL~GPPGtGKTsla~aiA~~l---~~~i~~l~~~~~~~--- 265 (431)
+.|+|+++....|-+.+...... ++. .+.-.+||.||.|+|||-||+|+|..+ .-.++.+|+++...
T Consensus 562 ~~V~gQ~eAv~aIa~AI~~sr~g------l~~~~~~awflflGpdgvGKt~lAkaLA~~~Fgse~~~IriDmse~~evsk 635 (898)
T KOG1051|consen 562 ERVIGQDEAVAAIAAAIRRSRAG------LKDPNPDAWFLFLGPDGVGKTELAKALAEYVFGSEENFIRLDMSEFQEVSK 635 (898)
T ss_pred hhccchHHHHHHHHHHHHhhhcc------cCCCCCCeEEEEECCCchhHHHHHHHHHHHHcCCccceEEechhhhhhhhh
Confidence 45688888888887777655431 122 244578999999999999999999976 23588888886311
Q ss_pred ----------hHHHHHHHHHhhhc----------ccchhhHHHHHHHHhcCcccCCC-------CceEEEEecCC
Q 035603 266 ----------NNELRSLLVDISSK----------KKKSNVTLSGLLNCIGGLWSTCG-------GERIIVFTTNH 313 (431)
Q Consensus 266 ----------~~~l~~l~~~~~~~----------~~~~~~~~s~lL~~ldg~~~~~~-------~~~ivI~TTN~ 313 (431)
......+......+ +..+...++.|+..+|.-.-..+ .+.|||||+|.
T Consensus 636 ligsp~gyvG~e~gg~LteavrrrP~sVVLfdeIEkAh~~v~n~llq~lD~GrltDs~Gr~Vd~kN~I~IMTsn~ 710 (898)
T KOG1051|consen 636 LIGSPPGYVGKEEGGQLTEAVKRRPYSVVLFEEIEKAHPDVLNILLQLLDRGRLTDSHGREVDFKNAIFIMTSNV 710 (898)
T ss_pred ccCCCcccccchhHHHHHHHHhcCCceEEEEechhhcCHHHHHHHHHHHhcCccccCCCcEeeccceEEEEeccc
Confidence 11222222222222 44556778888888875332222 25799999885
No 233
>COG3829 RocR Transcriptional regulator containing PAS, AAA-type ATPase, and DNA-binding domains [Transcription / Signal transduction mechanisms]
Probab=97.84 E-value=0.00021 Score=74.48 Aligned_cols=67 Identities=19% Similarity=0.225 Sum_probs=54.9
Q ss_pred ccCCCCccccccChhhHHHHHHHHHHHHhCHHHHHHhCCCCCceeEEeCCCCCcHHHHHHHHHHHc---CCCeEEecccC
Q 035603 186 FEHPATFDTLAMASKKKEAIKKDLIKFTEGKEYYAKIGKAWKRGYLLFGPPGTGKSTMIAAMANCL---NYDVYDLELTS 262 (431)
Q Consensus 186 ~~~p~~f~~l~g~~~~k~~i~~~l~~~~~~~~~~~~~g~~~~rg~LL~GPPGtGKTsla~aiA~~l---~~~i~~l~~~~ 262 (431)
+..+.+|++|+|......++++.+..+- +....+|+.|.+||||..+|++|-+.. +-||+.+||..
T Consensus 238 ~~a~y~f~~Iig~S~~m~~~~~~akr~A-----------~tdstVLi~GESGTGKElfA~~IH~~S~R~~~PFIaiNCaA 306 (560)
T COG3829 238 LKAKYTFDDIIGESPAMLRVLELAKRIA-----------KTDSTVLILGESGTGKELFARAIHNLSPRANGPFIAINCAA 306 (560)
T ss_pred cccccchhhhccCCHHHHHHHHHHHhhc-----------CCCCcEEEecCCCccHHHHHHHHHhcCcccCCCeEEEeccc
Confidence 4567889999999888777776554433 345689999999999999999998876 45899999998
Q ss_pred c
Q 035603 263 V 263 (431)
Q Consensus 263 ~ 263 (431)
+
T Consensus 307 i 307 (560)
T COG3829 307 I 307 (560)
T ss_pred C
Confidence 7
No 234
>PF06309 Torsin: Torsin; InterPro: IPR010448 This family consists of several eukaryotic torsin proteins. Torsion dystonia is an autosomal dominant movement disorder characterised by involuntary, repetitive muscle contractions and twisted postures. The most severe early-onset form of dystonia has been linked to mutations in the human DYT1 (TOR1A) gene encoding a protein termed torsinA. While causative genetic alterations have been identified, the function of torsin proteins and the molecular mechanism underlying dystonia remain unknown. Phylogenetic analysis of the torsin protein family indicates these proteins share distant sequence similarity with the large and diverse family of AAA ATPase, central region containing proteins () proteins. It has been suggested that torsins play a role in effectively managing protein folding and that possible breakdown in a neuroprotective mechanism that is, in part, mediated by torsins may be responsible for the neuronal dysfunction associated with dystonia [].; GO: 0005524 ATP binding, 0051085 chaperone mediated protein folding requiring cofactor
Probab=97.83 E-value=3.2e-05 Score=66.21 Aligned_cols=53 Identities=17% Similarity=0.085 Sum_probs=42.4
Q ss_pred cccccChhhHHHHHHHHHHHHhCHHHHHHhCCCCCceeEEeCCCCCcHHHHHHHHHHHc
Q 035603 193 DTLAMASKKKEAIKKDLIKFTEGKEYYAKIGKAWKRGYLLFGPPGTGKSTMIAAMANCL 251 (431)
Q Consensus 193 ~~l~g~~~~k~~i~~~l~~~~~~~~~~~~~g~~~~rg~LL~GPPGtGKTsla~aiA~~l 251 (431)
..|.|++-+++.|.+.+..++.++. -..|--+-||||||||||.+++.||+.+
T Consensus 25 ~~l~GQhla~~~v~~ai~~~l~~~~------p~KpLVlSfHG~tGtGKn~v~~liA~~l 77 (127)
T PF06309_consen 25 RNLFGQHLAVEVVVNAIKGHLANPN------PRKPLVLSFHGWTGTGKNFVSRLIAEHL 77 (127)
T ss_pred HHccCcHHHHHHHHHHHHHHHcCCC------CCCCEEEEeecCCCCcHHHHHHHHHHHH
Confidence 4578999999999999999997641 1223345699999999999999999974
No 235
>PRK09183 transposase/IS protein; Provisional
Probab=97.82 E-value=3.1e-05 Score=75.10 Aligned_cols=36 Identities=22% Similarity=0.353 Sum_probs=28.6
Q ss_pred CceeEEeCCCCCcHHHHHHHHHHHc---CCCeEEecccC
Q 035603 227 KRGYLLFGPPGTGKSTMIAAMANCL---NYDVYDLELTS 262 (431)
Q Consensus 227 ~rg~LL~GPPGtGKTsla~aiA~~l---~~~i~~l~~~~ 262 (431)
...++|+||||||||+|+.+|+..+ |..+..++..+
T Consensus 102 ~~~v~l~Gp~GtGKThLa~al~~~a~~~G~~v~~~~~~~ 140 (259)
T PRK09183 102 NENIVLLGPSGVGKTHLAIALGYEAVRAGIKVRFTTAAD 140 (259)
T ss_pred CCeEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEEeHHH
Confidence 4679999999999999999997653 66666665443
No 236
>PTZ00111 DNA replication licensing factor MCM4; Provisional
Probab=97.81 E-value=0.00014 Score=80.67 Aligned_cols=118 Identities=19% Similarity=0.212 Sum_probs=68.5
Q ss_pred eeEEeCCCCCcHHHHHHHHHHHcCCCe-------EEecccCcCC-hHHH-HHH------HHHhhhc-------ccchhhH
Q 035603 229 GYLLFGPPGTGKSTMIAAMANCLNYDV-------YDLELTSVEN-NNEL-RSL------LVDISSK-------KKKSNVT 286 (431)
Q Consensus 229 g~LL~GPPGtGKTsla~aiA~~l~~~i-------~~l~~~~~~~-~~~l-~~l------~~~~~~~-------~~~~~~~ 286 (431)
.+||.|+||||||.+++++++...... ..++++.... .+.. ... +..+... +......
T Consensus 494 hVLLvGDPGTGKSqLAr~Ih~lspR~~ytsG~~~s~vgLTa~~~~~d~~tG~~~le~GaLvlAdgGtL~IDEidkms~~~ 573 (915)
T PTZ00111 494 NVLLCGDPGTAKSQLLHYTHLLSPRSIYTSGKSSSSVGLTASIKFNESDNGRAMIQPGAVVLANGGVCCIDELDKCHNES 573 (915)
T ss_pred eEEEeCCCCccHHHHHHHHHHhCCccccCCCCCCccccccchhhhcccccCcccccCCcEEEcCCCeEEecchhhCCHHH
Confidence 699999999999999999998654332 2222222100 0000 000 0000000 2233455
Q ss_pred HHHHHHHhcCc---------ccCCCCceEEEEecCCCC-------------CCChhhhccCceeEE-EEcCCCCHHHHHH
Q 035603 287 LSGLLNCIGGL---------WSTCGGERIIVFTTNHVD-------------KLDPALIRRGRMDKH-IEMPYCCFEAFKV 343 (431)
Q Consensus 287 ~s~lL~~ldg~---------~~~~~~~~ivI~TTN~~~-------------~Ld~AllRpGRfd~~-I~~~~p~~~~r~~ 343 (431)
.+.|+..|..- ...-....-||+|+|..+ .|+++|+. |||.. +-++.|+.+.=+.
T Consensus 574 Q~aLlEaMEqqtIsI~KaGi~~tL~ar~rVIAAaNP~~gryd~~~s~~eni~Lp~~LLS--RFDLIf~l~D~~d~~~D~~ 651 (915)
T PTZ00111 574 RLSLYEVMEQQTVTIAKAGIVATLKAETAILASCNPINSRYNKNKAVIENINISPSLFT--RFDLIYLVLDHIDQDTDQL 651 (915)
T ss_pred HHHHHHHHhCCEEEEecCCcceecCCCeEEEEEcCCcccccCcccCcccccCCChHHhh--hhcEEEEecCCCChHHHHH
Confidence 67778877432 111223578999999752 47899999 99987 4567888765555
Q ss_pred HHHHh
Q 035603 344 LAKNY 348 (431)
Q Consensus 344 i~~~~ 348 (431)
|..+.
T Consensus 652 lA~hI 656 (915)
T PTZ00111 652 ISLSI 656 (915)
T ss_pred HHHHH
Confidence 54443
No 237
>KOG0990 consensus Replication factor C, subunit RFC5 [Replication, recombination and repair]
Probab=97.81 E-value=3.7e-05 Score=75.09 Aligned_cols=126 Identities=17% Similarity=0.220 Sum_probs=79.3
Q ss_pred CcceeeeccCCCCccccccChhhHHHHHHHHHHHHhCHHHHHHhCCCCCceeEEeCCCCCcHHHHHHHHHHHcCCC----
Q 035603 179 KKWSHVYFEHPATFDTLAMASKKKEAIKKDLIKFTEGKEYYAKIGKAWKRGYLLFGPPGTGKSTMIAAMANCLNYD---- 254 (431)
Q Consensus 179 ~~w~~~~~~~p~~f~~l~g~~~~k~~i~~~l~~~~~~~~~~~~~g~~~~rg~LL~GPPGtGKTsla~aiA~~l~~~---- 254 (431)
..|. +-.+|..+++|++.+++...+.+. . +.+--...|+|||||||||+.+.|.|..+-.+
T Consensus 29 ~pwv--ekyrP~~l~dv~~~~ei~st~~~~----~---------~~~~lPh~L~YgPPGtGktsti~a~a~~ly~~~~~~ 93 (360)
T KOG0990|consen 29 QPWV--EKYRPPFLGIVIKQEPIWSTENRY----S---------GMPGLPHLLFYGPPGTGKTSTILANARDFYSPHPTT 93 (360)
T ss_pred CCCc--cCCCCchhhhHhcCCchhhHHHHh----c---------cCCCCCcccccCCCCCCCCCchhhhhhhhcCCCCch
Confidence 4565 777899999999998887766443 1 22222289999999999999999999987542
Q ss_pred --eEEecccCcCChHHH---HHHHHHhhhc-----------------ccchhhHHHHHHHHhcCcccCCCCceEEEEecC
Q 035603 255 --VYDLELTSVENNNEL---RSLLVDISSK-----------------KKKSNVTLSGLLNCIGGLWSTCGGERIIVFTTN 312 (431)
Q Consensus 255 --i~~l~~~~~~~~~~l---~~l~~~~~~~-----------------~~~~~~~~s~lL~~ldg~~~~~~~~~ivI~TTN 312 (431)
+..+++++-.+.+.+ .+.|..+... +.......++|-..+.... .+.-++..+|
T Consensus 94 ~m~lelnaSd~rgid~vr~qi~~fast~~~~~fst~~~fKlvILDEADaMT~~AQnALRRviek~t----~n~rF~ii~n 169 (360)
T KOG0990|consen 94 SMLLELNASDDRGIDPVRQQIHLFASTQQPTTYSTHAAFKLVILDEADAMTRDAQNALRRVIEKYT----ANTRFATISN 169 (360)
T ss_pred hHHHHhhccCccCCcchHHHHHHHHhhccceeccccCceeEEEecchhHhhHHHHHHHHHHHHHhc----cceEEEEecc
Confidence 333444443322222 2233333321 2223334455555555442 3345557789
Q ss_pred CCCCCChhhhc
Q 035603 313 HVDKLDPALIR 323 (431)
Q Consensus 313 ~~~~Ld~AllR 323 (431)
++..+-|++..
T Consensus 170 ~~~ki~pa~qs 180 (360)
T KOG0990|consen 170 PPQKIHPAQQS 180 (360)
T ss_pred ChhhcCchhhc
Confidence 99999999986
No 238
>COG1936 Predicted nucleotide kinase (related to CMP and AMP kinases) [Nucleotide transport and metabolism]
Probab=97.80 E-value=4.3e-05 Score=68.58 Aligned_cols=29 Identities=34% Similarity=0.627 Sum_probs=26.9
Q ss_pred eEEeCCCCCcHHHHHHHHHHHcCCCeEEec
Q 035603 230 YLLFGPPGTGKSTMIAAMANCLNYDVYDLE 259 (431)
Q Consensus 230 ~LL~GPPGtGKTsla~aiA~~l~~~i~~l~ 259 (431)
+++.|+|||||||+++.++ ++|++++.++
T Consensus 3 I~ITGTPGvGKTT~~~~L~-~lg~~~i~l~ 31 (180)
T COG1936 3 IAITGTPGVGKTTVCKLLR-ELGYKVIELN 31 (180)
T ss_pred EEEeCCCCCchHHHHHHHH-HhCCceeeHH
Confidence 7899999999999999999 9999988765
No 239
>KOG1968 consensus Replication factor C, subunit RFC1 (large subunit) [Replication, recombination and repair]
Probab=97.79 E-value=3.9e-05 Score=85.15 Aligned_cols=192 Identities=20% Similarity=0.246 Sum_probs=113.4
Q ss_pred cceeeeccCCCCccccccChhhHHHHHHHHHHHHh-CHHHHHHhCCCC-Cc-eeEEeCCCCCcHHHHHHHHHHHcCCCeE
Q 035603 180 KWSHVYFEHPATFDTLAMASKKKEAIKKDLIKFTE-GKEYYAKIGKAW-KR-GYLLFGPPGTGKSTMIAAMANCLNYDVY 256 (431)
Q Consensus 180 ~w~~~~~~~p~~f~~l~g~~~~k~~i~~~l~~~~~-~~~~~~~~g~~~-~r-g~LL~GPPGtGKTsla~aiA~~l~~~i~ 256 (431)
.|. .-..|.....+.+.......+.+.+..+-. .+..|..-+... .+ ..|++||||.|||+.+.+.|.++|+.++
T Consensus 309 ~~~--~k~~p~~~k~~~~~~~~~~~~~~~l~~~k~~~~~sy~~~~~~ss~~~~~l~~G~pGigKT~~~h~~~k~~g~~v~ 386 (871)
T KOG1968|consen 309 GWT--EKYQPTSSKALEGNASSSKKASKWLAKSKDKEKSSYKENEPDSSKKKALLLSGPPGIGKTTAAHKAAKELGFKVV 386 (871)
T ss_pred ccc--cccccccHHhhhcccchhhhhhhHHHhhhccccccccccCcchhhHHHHHhcCCCCCCchhhHhhhhhhccccee
Confidence 565 445677778888887777777766665522 122232222111 12 3699999999999999999999999999
Q ss_pred EecccCcCChHHHHHHHHHhhhcc-------------cchhhHHHHHHHHhcCcccCC------------CCceEEEEec
Q 035603 257 DLELTSVENNNELRSLLVDISSKK-------------KKSNVTLSGLLNCIGGLWSTC------------GGERIIVFTT 311 (431)
Q Consensus 257 ~l~~~~~~~~~~l~~l~~~~~~~~-------------~~~~~~~s~lL~~ldg~~~~~------------~~~~ivI~TT 311 (431)
..|.+...+...+...+..+.... ......+.-|++..||+.... ...+-+|+|+
T Consensus 387 E~Nas~~RSk~~l~~~~~~~~~s~si~~~~~~~~~~~~~~~~~~vil~devD~~~~~dRg~v~~l~~l~~ks~~Piv~~c 466 (871)
T KOG1968|consen 387 EKNASDVRSKKELLNKLGNATSSHSIKGSKKKKGNRQSLNSDHFLILMDEVDGMFGEDRGGVSKLSSLCKKSSRPLVCTC 466 (871)
T ss_pred ecCccccccccHHHhhhhccccccchhhhhcccccccccccceeEEEEeccccccchhhhhHHHHHHHHHhccCCeEEEe
Confidence 999998877766666555433320 000001111223333332200 0125688999
Q ss_pred CCCCCCCh-hhhccCceeEEEEcCCCCHHHHHHHHHHhhchhcch-hHHHHHhHhccCCCCHHHHHHHhc
Q 035603 312 NHVDKLDP-ALIRRGRMDKHIEMPYCCFEAFKVLAKNYLEIESHE-LFHEIGSLLGETDITPADVAENLM 379 (431)
Q Consensus 312 N~~~~Ld~-AllRpGRfd~~I~~~~p~~~~r~~i~~~~l~~~~~~-~~~~i~~l~~~~~~s~adI~~~l~ 379 (431)
|....... ++.| -..-|+|+.|+......-+..+...+... ..+.++++.. .+.+||.+.++
T Consensus 467 ndr~~p~sr~~~~---~~~~l~f~kP~~~~i~~ri~si~~se~~ki~~~~l~~~s~---~~~~DiR~~i~ 530 (871)
T KOG1968|consen 467 NDRNLPKSRALSR---ACSDLRFSKPSSELIRSRIMSICKSEGIKISDDVLEEISK---LSGGDIRQIIM 530 (871)
T ss_pred cCCCCccccchhh---hcceeeecCCcHHHHHhhhhhhhcccceecCcHHHHHHHH---hcccCHHHHHH
Confidence 98777665 4444 33678999999888776666655433221 2233444443 33555554443
No 240
>KOG0745 consensus Putative ATP-dependent Clp-type protease (AAA+ ATPase superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=97.78 E-value=9.9e-05 Score=74.72 Aligned_cols=109 Identities=24% Similarity=0.334 Sum_probs=74.1
Q ss_pred CceeEEeCCCCCcHHHHHHHHHHHcCCCeEEecccCcCC--------hHHHHHHHHHhhhc-------------------
Q 035603 227 KRGYLLFGPPGTGKSTMIAAMANCLNYDVYDLELTSVEN--------NNELRSLLVDISSK------------------- 279 (431)
Q Consensus 227 ~rg~LL~GPPGtGKTsla~aiA~~l~~~i~~l~~~~~~~--------~~~l~~l~~~~~~~------------------- 279 (431)
+..+||-||.|+|||.||+.||.-++.||...|++.+.. +.-|.+++..+...
T Consensus 226 KSNvLllGPtGsGKTllaqTLAr~ldVPfaIcDcTtLTQAGYVGeDVEsvi~KLl~~A~~nVekAQqGIVflDEvDKi~~ 305 (564)
T KOG0745|consen 226 KSNVLLLGPTGSGKTLLAQTLARVLDVPFAICDCTTLTQAGYVGEDVESVIQKLLQEAEYNVEKAQQGIVFLDEVDKITK 305 (564)
T ss_pred cccEEEECCCCCchhHHHHHHHHHhCCCeEEecccchhhcccccccHHHHHHHHHHHccCCHHHHhcCeEEEehhhhhcc
Confidence 347999999999999999999999999999999998721 23355666554332
Q ss_pred ---------ccchhhHHHHHHHHhcCccc---------CCCCceEEEEecCC-------CCCCChhhhccCce-eEEEEc
Q 035603 280 ---------KKKSNVTLSGLLNCIGGLWS---------TCGGERIIVFTTNH-------VDKLDPALIRRGRM-DKHIEM 333 (431)
Q Consensus 280 ---------~~~~~~~~s~lL~~ldg~~~---------~~~~~~ivI~TTN~-------~~~Ld~AllRpGRf-d~~I~~ 333 (431)
+-........||..++|-.- ...++.+.|=|||- --.||.-+-| |+ |..+-|
T Consensus 306 ~~~~i~~~RDVsGEGVQQaLLKllEGtvVnVpeK~~~~~~rgd~vqiDTtnILFiasGAF~~Ldk~I~r--R~~d~slGF 383 (564)
T KOG0745|consen 306 KAESIHTSRDVSGEGVQQALLKLLEGTVVNVPEKGSRRKPRGDTVQIDTTNILFIASGAFVGLDKIISR--RLDDKSLGF 383 (564)
T ss_pred cCccccccccccchhHHHHHHHHhcccEEcccCCCCCCCCCCCeEEEeccceEEEecccccchHHHHHH--hhcchhccc
Confidence 11223456778999887321 22234555556553 3467777777 65 456777
Q ss_pred CCCC
Q 035603 334 PYCC 337 (431)
Q Consensus 334 ~~p~ 337 (431)
+.|+
T Consensus 384 g~~s 387 (564)
T KOG0745|consen 384 GAPS 387 (564)
T ss_pred CCCC
Confidence 7774
No 241
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=97.76 E-value=3.1e-05 Score=66.18 Aligned_cols=47 Identities=30% Similarity=0.497 Sum_probs=33.6
Q ss_pred CceeEEeCCCCCcHHHHHHHHHHHc--------CCCeEEecccCcCChHHHHHHH
Q 035603 227 KRGYLLFGPPGTGKSTMIAAMANCL--------NYDVYDLELTSVENNNELRSLL 273 (431)
Q Consensus 227 ~rg~LL~GPPGtGKTsla~aiA~~l--------~~~i~~l~~~~~~~~~~l~~l~ 273 (431)
++.++++||||+|||++++.++..+ ..+++.+++....+...+..-+
T Consensus 4 ~~~~~i~G~~G~GKT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 58 (131)
T PF13401_consen 4 QRILVISGPPGSGKTTLIKRLARQLNAEAEIKNHPDVIYVNCPSSRTPRDFAQEI 58 (131)
T ss_dssp ---EEEEE-TTSSHHHHHHHHHHHHHHHHHHCCCEEEEEEEHHHHSSHHHHHHHH
T ss_pred CcccEEEcCCCCCHHHHHHHHHHHhHHhhhccCCCcEEEEEeCCCCCHHHHHHHH
Confidence 4578999999999999999999987 6778888776655444444333
No 242
>PRK13947 shikimate kinase; Provisional
Probab=97.76 E-value=2.6e-05 Score=70.16 Aligned_cols=32 Identities=31% Similarity=0.453 Sum_probs=29.8
Q ss_pred eeEEeCCCCCcHHHHHHHHHHHcCCCeEEecc
Q 035603 229 GYLLFGPPGTGKSTMIAAMANCLNYDVYDLEL 260 (431)
Q Consensus 229 g~LL~GPPGtGKTsla~aiA~~l~~~i~~l~~ 260 (431)
.++|.||||||||++++.+|..+|+++++.+.
T Consensus 3 ~I~l~G~~GsGKst~a~~La~~lg~~~id~d~ 34 (171)
T PRK13947 3 NIVLIGFMGTGKTTVGKRVATTLSFGFIDTDK 34 (171)
T ss_pred eEEEEcCCCCCHHHHHHHHHHHhCCCEEECch
Confidence 48999999999999999999999999998764
No 243
>PRK03839 putative kinase; Provisional
Probab=97.75 E-value=2.4e-05 Score=71.26 Aligned_cols=30 Identities=37% Similarity=0.625 Sum_probs=28.1
Q ss_pred eEEeCCCCCcHHHHHHHHHHHcCCCeEEec
Q 035603 230 YLLFGPPGTGKSTMIAAMANCLNYDVYDLE 259 (431)
Q Consensus 230 ~LL~GPPGtGKTsla~aiA~~l~~~i~~l~ 259 (431)
++|.|+||+||||+++.+|+.+++++++++
T Consensus 3 I~l~G~pGsGKsT~~~~La~~~~~~~id~d 32 (180)
T PRK03839 3 IAITGTPGVGKTTVSKLLAEKLGYEYVDLT 32 (180)
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCcEEehh
Confidence 789999999999999999999999998765
No 244
>PRK00625 shikimate kinase; Provisional
Probab=97.74 E-value=2.7e-05 Score=70.87 Aligned_cols=32 Identities=28% Similarity=0.448 Sum_probs=29.7
Q ss_pred eeEEeCCCCCcHHHHHHHHHHHcCCCeEEecc
Q 035603 229 GYLLFGPPGTGKSTMIAAMANCLNYDVYDLEL 260 (431)
Q Consensus 229 g~LL~GPPGtGKTsla~aiA~~l~~~i~~l~~ 260 (431)
-++|.|+||+|||++++.+|..++++++++|.
T Consensus 2 ~I~LiG~pGsGKTT~~k~La~~l~~~~id~D~ 33 (173)
T PRK00625 2 QIFLCGLPTVGKTSFGKALAKFLSLPFFDTDD 33 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCCEEEhhH
Confidence 38999999999999999999999999998874
No 245
>PRK10923 glnG nitrogen regulation protein NR(I); Provisional
Probab=97.74 E-value=0.00048 Score=72.24 Aligned_cols=146 Identities=15% Similarity=0.169 Sum_probs=88.6
Q ss_pred CccccccChhhHHHHHHHHHHHHhCHHHHHHhCCCCCceeEEeCCCCCcHHHHHHHHHHHcC---CCeEEecccCcCChH
Q 035603 191 TFDTLAMASKKKEAIKKDLIKFTEGKEYYAKIGKAWKRGYLLFGPPGTGKSTMIAAMANCLN---YDVYDLELTSVENNN 267 (431)
Q Consensus 191 ~f~~l~g~~~~k~~i~~~l~~~~~~~~~~~~~g~~~~rg~LL~GPPGtGKTsla~aiA~~l~---~~i~~l~~~~~~~~~ 267 (431)
.+.+++|.....+.+.+.+.... +....+|+.|++|||||++|++|..... .+++.++|..+.. +
T Consensus 136 ~~~~lig~s~~~~~l~~~~~~~~-----------~~~~~vli~Ge~GtGK~~lA~~ih~~s~~~~~~~i~i~c~~~~~-~ 203 (469)
T PRK10923 136 PTTDIIGEAPAMQDVFRIIGRLS-----------RSSISVLINGESGTGKELVAHALHRHSPRAKAPFIALNMAAIPK-D 203 (469)
T ss_pred ccccceecCHHHHHHHHHHHHHh-----------ccCCeEEEEeCCCCcHHHHHHHHHhcCCCCCCCeEeeeCCCCCH-H
Confidence 35567777766666655554322 2245799999999999999999998764 6899999998733 3
Q ss_pred HHH-HHHHHhhh------------------c-------ccchhhHHHHHHHHhcCccc-C-CC-----CceEEEEecCCC
Q 035603 268 ELR-SLLVDISS------------------K-------KKKSNVTLSGLLNCIGGLWS-T-CG-----GERIIVFTTNHV 314 (431)
Q Consensus 268 ~l~-~l~~~~~~------------------~-------~~~~~~~~s~lL~~ldg~~~-~-~~-----~~~ivI~TTN~~ 314 (431)
.+. .+|....+ . +.-.......|+..++.-.- . .+ -.+-||+||+..
T Consensus 204 ~~~~~lfg~~~g~~~~~~~~~~g~~~~a~~Gtl~l~~i~~l~~~~q~~L~~~l~~~~~~~~~~~~~~~~~~rii~~~~~~ 283 (469)
T PRK10923 204 LIESELFGHEKGAFTGANTIRQGRFEQADGGTLFLDEIGDMPLDVQTRLLRVLADGQFYRVGGYAPVKVDVRIIAATHQN 283 (469)
T ss_pred HHHHHhcCCCCCCCCCCCcCCCCCeeECCCCEEEEeccccCCHHHHHHHHHHHhcCcEEeCCCCCeEEeeEEEEEeCCCC
Confidence 333 33332110 0 22233455667777753210 0 01 124567777642
Q ss_pred -------CCCChhhhccCce-eEEEEcCCCC--HHHHHHHHHHhhc
Q 035603 315 -------DKLDPALIRRGRM-DKHIEMPYCC--FEAFKVLAKNYLE 350 (431)
Q Consensus 315 -------~~Ld~AllRpGRf-d~~I~~~~p~--~~~r~~i~~~~l~ 350 (431)
..+.+.|.. |+ ...|.+|+.. .+....|+.+|+.
T Consensus 284 l~~~~~~~~~~~~L~~--~l~~~~i~~PpLreR~~Di~~l~~~~l~ 327 (469)
T PRK10923 284 LEQRVQEGKFREDLFH--RLNVIRVHLPPLRERREDIPRLARHFLQ 327 (469)
T ss_pred HHHHHHcCCchHHHHH--HhcceeecCCCcccchhhHHHHHHHHHH
Confidence 245566766 66 5677777764 3566667777764
No 246
>PTZ00202 tuzin; Provisional
Probab=97.73 E-value=0.0012 Score=67.79 Aligned_cols=112 Identities=14% Similarity=0.185 Sum_probs=66.6
Q ss_pred CCCCccccccChhhHHHHHHHHHHHHhCHHHHHHhCCCCCceeEEeCCCCCcHHHHHHHHHHHcCCCeEEecccCcCChH
Q 035603 188 HPATFDTLAMASKKKEAIKKDLIKFTEGKEYYAKIGKAWKRGYLLFGPPGTGKSTMIAAMANCLNYDVYDLELTSVENNN 267 (431)
Q Consensus 188 ~p~~f~~l~g~~~~k~~i~~~l~~~~~~~~~~~~~g~~~~rg~LL~GPPGtGKTsla~aiA~~l~~~i~~l~~~~~~~~~ 267 (431)
-|....+.+|-+.....|...+. ......++-+.|.||+|||||++++.++..++...+.+|+.. ..+
T Consensus 257 lPa~~~~FVGReaEla~Lr~VL~----------~~d~~~privvLtG~~G~GKTTLlR~~~~~l~~~qL~vNprg--~eE 324 (550)
T PTZ00202 257 APAVIRQFVSREAEESWVRQVLR----------RLDTAHPRIVVFTGFRGCGKSSLCRSAVRKEGMPAVFVDVRG--TED 324 (550)
T ss_pred CCCCccCCCCcHHHHHHHHHHHh----------ccCCCCceEEEEECCCCCCHHHHHHHHHhcCCceEEEECCCC--HHH
Confidence 45556677887766666644332 123334567789999999999999999999998888888873 234
Q ss_pred HHHHHHHHhhhcccch-hhHHHHHHHHhcCcccCCCCceEEEEec
Q 035603 268 ELRSLLVDISSKKKKS-NVTLSGLLNCIGGLWSTCGGERIIVFTT 311 (431)
Q Consensus 268 ~l~~l~~~~~~~~~~~-~~~~s~lL~~ldg~~~~~~~~~ivI~TT 311 (431)
-++.++....-..... ...+..+-+.+-......|...++|.+-
T Consensus 325 lLr~LL~ALGV~p~~~k~dLLrqIqeaLl~~~~e~GrtPVLII~l 369 (550)
T PTZ00202 325 TLRSVVKALGVPNVEACGDLLDFISEACRRAKKMNGETPLLVLKL 369 (550)
T ss_pred HHHHHHHHcCCCCcccHHHHHHHHHHHHHHHHHhCCCCEEEEEEe
Confidence 4444444433221111 2333444444443333334445666553
No 247
>cd00464 SK Shikimate kinase (SK) is the fifth enzyme in the shikimate pathway, a seven-step biosynthetic pathway which converts erythrose-4-phosphate to chorismic acid, found in bacteria, fungi and plants. Chorismic acid is a important intermediate in the synthesis of aromatic compounds, such as aromatic amino acids, p-aminobenzoic acid, folate and ubiquinone. Shikimate kinase catalyses the phosphorylation of the 3-hydroxyl group of shikimic acid using ATP.
Probab=97.73 E-value=3e-05 Score=68.27 Aligned_cols=30 Identities=33% Similarity=0.498 Sum_probs=28.3
Q ss_pred eEEeCCCCCcHHHHHHHHHHHcCCCeEEec
Q 035603 230 YLLFGPPGTGKSTMIAAMANCLNYDVYDLE 259 (431)
Q Consensus 230 ~LL~GPPGtGKTsla~aiA~~l~~~i~~l~ 259 (431)
++|+||||+|||++++.+|..+++++++.+
T Consensus 2 i~l~G~~GsGKstla~~la~~l~~~~~~~d 31 (154)
T cd00464 2 IVLIGMMGAGKTTVGRLLAKALGLPFVDLD 31 (154)
T ss_pred EEEEcCCCCCHHHHHHHHHHHhCCCEEEch
Confidence 789999999999999999999999998776
No 248
>PLN02199 shikimate kinase
Probab=97.72 E-value=0.00012 Score=71.69 Aligned_cols=34 Identities=32% Similarity=0.543 Sum_probs=31.6
Q ss_pred CceeEEeCCCCCcHHHHHHHHHHHcCCCeEEecc
Q 035603 227 KRGYLLFGPPGTGKSTMIAAMANCLNYDVYDLEL 260 (431)
Q Consensus 227 ~rg~LL~GPPGtGKTsla~aiA~~l~~~i~~l~~ 260 (431)
.+.++|.|++|+|||++++.+|+.+|+++++.|.
T Consensus 102 ~~~I~LIG~~GSGKSTVgr~LA~~Lg~~fIDtD~ 135 (303)
T PLN02199 102 GRSMYLVGMMGSGKTTVGKLMSKVLGYTFFDCDT 135 (303)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHhCCCEEehHH
Confidence 4689999999999999999999999999998874
No 249
>PRK13949 shikimate kinase; Provisional
Probab=97.72 E-value=3.1e-05 Score=70.14 Aligned_cols=33 Identities=33% Similarity=0.469 Sum_probs=30.2
Q ss_pred ceeEEeCCCCCcHHHHHHHHHHHcCCCeEEecc
Q 035603 228 RGYLLFGPPGTGKSTMIAAMANCLNYDVYDLEL 260 (431)
Q Consensus 228 rg~LL~GPPGtGKTsla~aiA~~l~~~i~~l~~ 260 (431)
+.++|.||||+|||++++.+|+.++++++++|.
T Consensus 2 ~~I~liG~~GsGKstl~~~La~~l~~~~id~D~ 34 (169)
T PRK13949 2 ARIFLVGYMGAGKTTLGKALARELGLSFIDLDF 34 (169)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHcCCCeecccH
Confidence 358999999999999999999999999998773
No 250
>PRK07276 DNA polymerase III subunit delta'; Validated
Probab=97.71 E-value=0.00099 Score=65.47 Aligned_cols=111 Identities=23% Similarity=0.238 Sum_probs=74.4
Q ss_pred CCceeEEeCCCCCcHHHHHHHHHHHcCC------------------------CeEEecccCc-CChHHHHHHHHHhhhc-
Q 035603 226 WKRGYLLFGPPGTGKSTMIAAMANCLNY------------------------DVYDLELTSV-ENNNELRSLLVDISSK- 279 (431)
Q Consensus 226 ~~rg~LL~GPPGtGKTsla~aiA~~l~~------------------------~i~~l~~~~~-~~~~~l~~l~~~~~~~- 279 (431)
.+.+|||+|| +||+++|.++|..+-+ +++.+....- -..+.++++.......
T Consensus 23 l~hAyLf~G~--~G~~~~A~~~A~~llC~~~~~~~~Cg~C~~C~~i~~~~HPD~~~i~p~~~~I~idqIR~l~~~~~~~p 100 (290)
T PRK07276 23 LNHAYLFSGD--FASFEMALFLAQSLFCEQKEGVLPCGHCRSCRLIEQGEFSDVTVIEPQGQVIKTDTIRELVKNFSQSG 100 (290)
T ss_pred cceeeeeeCC--ccHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHhcCCCCCeeeecCCCCcCCHHHHHHHHHHHhhCc
Confidence 3568999997 5899999999986643 2222222110 1235677665544332
Q ss_pred -------------ccchhhHHHHHHHHhcCcccCCCCceEEEEecCCCCCCChhhhccCceeEEEEcCCCCHHHHHHHHH
Q 035603 280 -------------KKKSNVTLSGLLNCIGGLWSTCGGERIIVFTTNHVDKLDPALIRRGRMDKHIEMPYCCFEAFKVLAK 346 (431)
Q Consensus 280 -------------~~~~~~~~s~lL~~ldg~~~~~~~~~ivI~TTN~~~~Ld~AllRpGRfd~~I~~~~p~~~~r~~i~~ 346 (431)
+.-....-+.||..|+. ++.++++|.+|+.++.|-|.+++ |. .+|.|+. +.+...+++.
T Consensus 101 ~~~~~kV~II~~ad~m~~~AaNaLLKtLEE----Pp~~t~~iL~t~~~~~lLpTI~S--Rc-q~i~f~~-~~~~~~~~L~ 172 (290)
T PRK07276 101 YEGKQQVFIIKDADKMHVNAANSLLKVIEE----PQSEIYIFLLTNDENKVLPTIKS--RT-QIFHFPK-NEAYLIQLLE 172 (290)
T ss_pred ccCCcEEEEeehhhhcCHHHHHHHHHHhcC----CCCCeEEEEEECChhhCchHHHH--cc-eeeeCCC-cHHHHHHHHH
Confidence 33455678899999984 45668999999999999999998 44 6788866 4554444443
No 251
>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B ....
Probab=97.71 E-value=2.1e-05 Score=68.33 Aligned_cols=28 Identities=43% Similarity=0.679 Sum_probs=24.7
Q ss_pred eEEeCCCCCcHHHHHHHHHHHcCCCeEE
Q 035603 230 YLLFGPPGTGKSTMIAAMANCLNYDVYD 257 (431)
Q Consensus 230 ~LL~GPPGtGKTsla~aiA~~l~~~i~~ 257 (431)
+++.||||||||++|+.++..++..++.
T Consensus 2 ii~~G~pgsGKSt~a~~l~~~~~~~~i~ 29 (143)
T PF13671_consen 2 IILCGPPGSGKSTLAKRLAKRLGAVVIS 29 (143)
T ss_dssp EEEEESTTSSHHHHHHHHHHHSTEEEEE
T ss_pred EEEECCCCCCHHHHHHHHHHHCCCEEEe
Confidence 6899999999999999999999955544
No 252
>KOG1970 consensus Checkpoint RAD17-RFC complex, RAD17/RAD24 component [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=97.70 E-value=4.4e-05 Score=79.27 Aligned_cols=73 Identities=32% Similarity=0.427 Sum_probs=54.8
Q ss_pred CcceeeeccCCCCccccccChhhHHHHHHHHHHHHhCHHHHHHhCCCCCceeEEeCCCCCcHHHHHHHHHHHcCCCeEEe
Q 035603 179 KKWSHVYFEHPATFDTLAMASKKKEAIKKDLIKFTEGKEYYAKIGKAWKRGYLLFGPPGTGKSTMIAAMANCLNYDVYDL 258 (431)
Q Consensus 179 ~~w~~~~~~~p~~f~~l~g~~~~k~~i~~~l~~~~~~~~~~~~~g~~~~rg~LL~GPPGtGKTsla~aiA~~l~~~i~~l 258 (431)
..|. .--.|.+.++|+.......++.+++..+.... .....|-+||+||+|||||+.++.||.++|+.+...
T Consensus 70 elW~--eKy~P~t~eeLAVHkkKI~eVk~WL~~~~~~~------~~l~~~iLLltGPsGcGKSTtvkvLskelg~~~~Ew 141 (634)
T KOG1970|consen 70 ELWV--EKYKPRTLEELAVHKKKISEVKQWLKQVAEFT------PKLGSRILLLTGPSGCGKSTTVKVLSKELGYQLIEW 141 (634)
T ss_pred chhH--HhcCcccHHHHhhhHHhHHHHHHHHHHHHHhc------cCCCceEEEEeCCCCCCchhHHHHHHHhhCceeeee
Confidence 4675 55689999999998777777766665222111 112346789999999999999999999999998876
Q ss_pred c
Q 035603 259 E 259 (431)
Q Consensus 259 ~ 259 (431)
.
T Consensus 142 ~ 142 (634)
T KOG1970|consen 142 S 142 (634)
T ss_pred c
Confidence 4
No 253
>PF13173 AAA_14: AAA domain
Probab=97.69 E-value=0.00011 Score=63.06 Aligned_cols=36 Identities=25% Similarity=0.453 Sum_probs=31.2
Q ss_pred ceeEEeCCCCCcHHHHHHHHHHHcC--CCeEEecccCc
Q 035603 228 RGYLLFGPPGTGKSTMIAAMANCLN--YDVYDLELTSV 263 (431)
Q Consensus 228 rg~LL~GPPGtGKTsla~aiA~~l~--~~i~~l~~~~~ 263 (431)
+.++|+||+|||||++++.++..+. .+++.+++.+.
T Consensus 3 ~~~~l~G~R~vGKTtll~~~~~~~~~~~~~~yi~~~~~ 40 (128)
T PF13173_consen 3 KIIILTGPRGVGKTTLLKQLAKDLLPPENILYINFDDP 40 (128)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhcccccceeeccCCH
Confidence 5689999999999999999998876 77888887765
No 254
>PTZ00088 adenylate kinase 1; Provisional
Probab=97.69 E-value=0.00021 Score=68.00 Aligned_cols=117 Identities=14% Similarity=0.182 Sum_probs=65.0
Q ss_pred eeEEeCCCCCcHHHHHHHHHHHcCCCeEEecccC---cCChHHHHHHHHHhhhcc--cchhhHHHHHHHHhcCcccCCCC
Q 035603 229 GYLLFGPPGTGKSTMIAAMANCLNYDVYDLELTS---VENNNELRSLLVDISSKK--KKSNVTLSGLLNCIGGLWSTCGG 303 (431)
Q Consensus 229 g~LL~GPPGtGKTsla~aiA~~l~~~i~~l~~~~---~~~~~~l~~l~~~~~~~~--~~~~~~~s~lL~~ldg~~~~~~~ 303 (431)
-++|.||||+|||++++.+|..+|++++.++--- +.....+...+.....+. -....+.+-+...+..+...+..
T Consensus 8 rIvl~G~PGsGK~T~a~~La~~~g~~~is~gdllr~~~~~~t~lg~~i~~~~~~G~lvpd~iv~~lv~~~l~~~~~~~~~ 87 (229)
T PTZ00088 8 KIVLFGAPGVGKGTFAEILSKKENLKHINMGNILREEIKAKTTIGKEIQKVVTSGNLVPDNLVIAIVKDEIAKVTDDCFK 87 (229)
T ss_pred eEEEECCCCCCHHHHHHHHHHHhCCcEEECChHHHHHhhcCChHHHHHHHHHHcCCcCCHHHHHHHHHHHHHhhccccCc
Confidence 3899999999999999999999998877654211 111112222222222221 11233444444454432112222
Q ss_pred ceEEEEecCCCCCCChhhh--ccCceeEEEEcCCCCHHHHHHHHHHh
Q 035603 304 ERIIVFTTNHVDKLDPALI--RRGRMDKHIEMPYCCFEAFKVLAKNY 348 (431)
Q Consensus 304 ~~ivI~TTN~~~~Ld~All--RpGRfd~~I~~~~p~~~~r~~i~~~~ 348 (431)
.+ |+-. .|..++.+.. .-++.+..|.+..|+......+....
T Consensus 88 -g~-iLDG-fPRt~~Qa~~l~~~~~~~~vi~l~~~~~~~~~Rl~~Rr 131 (229)
T PTZ00088 88 -GF-ILDG-FPRNLKQCKELGKITNIDLFVNIYLPRNILIKKLLGRR 131 (229)
T ss_pred -eE-EEec-CCCCHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHcCc
Confidence 22 3222 4445554432 33578889999999877666666554
No 255
>TIGR01313 therm_gnt_kin carbohydrate kinase, thermoresistant glucokinase family. This model represents a subfamily of proteins that includes thermoresistant and thermosensitve isozymes of gluconate kinase (gluconokinase) in E. coli and other related proteins; members of this family are often named by similarity to the thermostable isozyme. These proteins show homology to shikimate kinases and adenylate kinases but not to gluconate kinases from the FGGY family of carbohydrate kinases.
Probab=97.65 E-value=0.00016 Score=64.66 Aligned_cols=29 Identities=34% Similarity=0.575 Sum_probs=25.3
Q ss_pred eEEeCCCCCcHHHHHHHHHHHcCCCeEEe
Q 035603 230 YLLFGPPGTGKSTMIAAMANCLNYDVYDL 258 (431)
Q Consensus 230 ~LL~GPPGtGKTsla~aiA~~l~~~i~~l 258 (431)
++|.||||||||++++.+++.++..+++.
T Consensus 1 i~l~G~~GsGKSTla~~l~~~l~~~~v~~ 29 (163)
T TIGR01313 1 FVLMGVAGSGKSTIASALAHRLGAKFIEG 29 (163)
T ss_pred CEEECCCCCCHHHHHHHHHHhcCCeEEeC
Confidence 57899999999999999999999766543
No 256
>PF03969 AFG1_ATPase: AFG1-like ATPase; InterPro: IPR005654 ATPase family gene 1 (AFG1) ATPase is a 377 amino acid putative protein with an ATPase motif typical of the protein family including SEC18p PAS1, CDC48-VCP and TBP. AFG1 also has substantial homology to these proteins outside the ATPase domain []. This family of proteins contains a P-loop motif.; GO: 0005524 ATP binding
Probab=97.65 E-value=0.00018 Score=72.99 Aligned_cols=31 Identities=26% Similarity=0.504 Sum_probs=27.1
Q ss_pred CCCCCceeEEeCCCCCcHHHHHHHHHHHcCC
Q 035603 223 GKAWKRGYLLFGPPGTGKSTMIAAMANCLNY 253 (431)
Q Consensus 223 g~~~~rg~LL~GPPGtGKTsla~aiA~~l~~ 253 (431)
..+.++|+.||||+|+|||+|.-.....+..
T Consensus 58 ~~~~~~GlYl~G~vG~GKT~Lmd~f~~~lp~ 88 (362)
T PF03969_consen 58 PPPPPKGLYLWGPVGRGKTMLMDLFYDSLPI 88 (362)
T ss_pred cCCCCceEEEECCCCCchhHHHHHHHHhCCc
Confidence 3567899999999999999999999887754
No 257
>PRK13406 bchD magnesium chelatase subunit D; Provisional
Probab=97.63 E-value=0.0007 Score=72.80 Aligned_cols=111 Identities=15% Similarity=0.109 Sum_probs=76.9
Q ss_pred ceeEEeCCCCCcHHHHHHHHHHHcCC--CeEEecccC----cCChHHHHHHHHHhhh------------c-------ccc
Q 035603 228 RGYLLFGPPGTGKSTMIAAMANCLNY--DVYDLELTS----VENNNELRSLLVDISS------------K-------KKK 282 (431)
Q Consensus 228 rg~LL~GPPGtGKTsla~aiA~~l~~--~i~~l~~~~----~~~~~~l~~l~~~~~~------------~-------~~~ 282 (431)
.|+||-|++|||||+++++++.-+.- +|..+-.+. +-+.-+|...+..-.. . ...
T Consensus 26 gGv~i~g~~G~~ks~~~r~l~~llp~~~p~r~~p~~~t~~~L~Gg~Dl~~~l~~g~~~~~pGlla~Ah~GvL~lDe~n~~ 105 (584)
T PRK13406 26 GGVVLRARAGPVRDRWLAALRALLPAGTPLRRLPPGIADDRLLGGLDLAATLRAGRPVAQRGLLAEADGGVLVLAMAERL 105 (584)
T ss_pred ceEEEEcCCCcHHHHHHHHHHHhcCCCCCcccCCCCCcHHHccCCchHHhHhhcCCcCCCCCceeeccCCEEEecCcccC
Confidence 58999999999999999999998865 666553332 1122233333322221 1 445
Q ss_pred hhhHHHHHHHHhcC---------cccCCCCceEEEEecCCC---CCCChhhhccCceeEEEEcCCCCHHH
Q 035603 283 SNVTLSGLLNCIGG---------LWSTCGGERIIVFTTNHV---DKLDPALIRRGRMDKHIEMPYCCFEA 340 (431)
Q Consensus 283 ~~~~~s~lL~~ldg---------~~~~~~~~~ivI~TTN~~---~~Ld~AllRpGRfd~~I~~~~p~~~~ 340 (431)
...+++.|++.|+. .........++|+|-|.. +.|+++++. ||+++|.+++|+..+
T Consensus 106 ~~~~~~aLleame~G~vtIeR~G~s~~~Pa~F~LIat~~~~~~~~~L~~~lLD--Rf~l~v~v~~~~~~~ 173 (584)
T PRK13406 106 EPGTAARLAAALDTGEVRLERDGLALRLPARFGLVALDEGAEEDERAPAALAD--RLAFHLDLDGLALRD 173 (584)
T ss_pred CHHHHHHHHHHHhCCcEEEEECCcEEecCCCcEEEecCCChhcccCCCHHhHh--heEEEEEcCCCChHH
Confidence 67889999999853 322333457788875543 569999999 999999999998654
No 258
>PRK00279 adk adenylate kinase; Reviewed
Probab=97.63 E-value=0.00067 Score=63.66 Aligned_cols=29 Identities=31% Similarity=0.512 Sum_probs=26.4
Q ss_pred eEEeCCCCCcHHHHHHHHHHHcCCCeEEe
Q 035603 230 YLLFGPPGTGKSTMIAAMANCLNYDVYDL 258 (431)
Q Consensus 230 ~LL~GPPGtGKTsla~aiA~~l~~~i~~l 258 (431)
++++||||+|||++++.||..+|+..+.+
T Consensus 3 I~v~G~pGsGKsT~a~~la~~~~~~~is~ 31 (215)
T PRK00279 3 LILLGPPGAGKGTQAKFIAEKYGIPHIST 31 (215)
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCcEEEC
Confidence 89999999999999999999999776654
No 259
>PRK13948 shikimate kinase; Provisional
Probab=97.63 E-value=6.4e-05 Score=68.97 Aligned_cols=36 Identities=25% Similarity=0.130 Sum_probs=32.6
Q ss_pred CCCceeEEeCCCCCcHHHHHHHHHHHcCCCeEEecc
Q 035603 225 AWKRGYLLFGPPGTGKSTMIAAMANCLNYDVYDLEL 260 (431)
Q Consensus 225 ~~~rg~LL~GPPGtGKTsla~aiA~~l~~~i~~l~~ 260 (431)
+.++.++|.|+||||||++++.+|..+++++++.|.
T Consensus 8 ~~~~~I~LiG~~GsGKSTvg~~La~~lg~~~iD~D~ 43 (182)
T PRK13948 8 RPVTWVALAGFMGTGKSRIGWELSRALMLHFIDTDR 43 (182)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHcCCCEEECCH
Confidence 345789999999999999999999999999998873
No 260
>PRK08233 hypothetical protein; Provisional
Probab=97.61 E-value=0.00036 Score=63.08 Aligned_cols=113 Identities=14% Similarity=0.102 Sum_probs=59.7
Q ss_pred ceeEEeCCCCCcHHHHHHHHHHHcC-CCeEEecccCcCC-hHHHHHHHHHhhhcccchhhHHHHHHHHhcCcccCCCCce
Q 035603 228 RGYLLFGPPGTGKSTMIAAMANCLN-YDVYDLELTSVEN-NNELRSLLVDISSKKKKSNVTLSGLLNCIGGLWSTCGGER 305 (431)
Q Consensus 228 rg~LL~GPPGtGKTsla~aiA~~l~-~~i~~l~~~~~~~-~~~l~~l~~~~~~~~~~~~~~~s~lL~~ldg~~~~~~~~~ 305 (431)
.-+.+.||||+||||+++.||..++ ..++..+.-.... ...+....... .......+..+...+....+..+..+
T Consensus 4 ~iI~I~G~~GsGKtTla~~L~~~l~~~~~~~~d~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~l~~~~~~~~~~~ 80 (182)
T PRK08233 4 KIITIAAVSGGGKTTLTERLTHKLKNSKALYFDRYDFDNCPEDICKWIDKG---ANYSEWVLTPLIKDIQELIAKSNVDY 80 (182)
T ss_pred eEEEEECCCCCCHHHHHHHHHhhCCCCceEEECCEEcccCchhhhhhhhcc---CChhhhhhHHHHHHHHHHHcCCCceE
Confidence 3466789999999999999999996 4455554333211 11222222211 11122233344444433322222123
Q ss_pred EEEEecCCCCCCChhhhccCceeEEEEcCCCCHHHHHHHHHH
Q 035603 306 IIVFTTNHVDKLDPALIRRGRMDKHIEMPYCCFEAFKVLAKN 347 (431)
Q Consensus 306 ivI~TTN~~~~Ld~AllRpGRfd~~I~~~~p~~~~r~~i~~~ 347 (431)
||.-... ..+.+.+.. .+|..|.+..|.......+.+.
T Consensus 81 -vivd~~~-~~~~~~~~~--~~d~~i~l~~~~~~~~~R~~~R 118 (182)
T PRK08233 81 -IIVDYPF-AYLNSEMRQ--FIDVTIFIDTPLDIAMARRILR 118 (182)
T ss_pred -EEEeeeh-hhccHHHHH--HcCEEEEEcCCHHHHHHHHHHH
Confidence 3333222 234445544 6899999998887655554433
No 261
>PRK06921 hypothetical protein; Provisional
Probab=97.61 E-value=0.00011 Score=71.60 Aligned_cols=36 Identities=33% Similarity=0.548 Sum_probs=29.3
Q ss_pred CceeEEeCCCCCcHHHHHHHHHHHc----CCCeEEecccC
Q 035603 227 KRGYLLFGPPGTGKSTMIAAMANCL----NYDVYDLELTS 262 (431)
Q Consensus 227 ~rg~LL~GPPGtGKTsla~aiA~~l----~~~i~~l~~~~ 262 (431)
..+++|+||||||||.|+.|||+++ |..++.+...+
T Consensus 117 ~~~l~l~G~~G~GKThLa~aia~~l~~~~g~~v~y~~~~~ 156 (266)
T PRK06921 117 KNSIALLGQPGSGKTHLLTAAANELMRKKGVPVLYFPFVE 156 (266)
T ss_pred CCeEEEECCCCCcHHHHHHHHHHHHhhhcCceEEEEEHHH
Confidence 5689999999999999999999976 55666665433
No 262
>PF05729 NACHT: NACHT domain
Probab=97.59 E-value=0.00032 Score=61.89 Aligned_cols=24 Identities=42% Similarity=0.682 Sum_probs=21.3
Q ss_pred ceeEEeCCCCCcHHHHHHHHHHHc
Q 035603 228 RGYLLFGPPGTGKSTMIAAMANCL 251 (431)
Q Consensus 228 rg~LL~GPPGtGKTsla~aiA~~l 251 (431)
|-++++|+||+|||++++.++..+
T Consensus 1 r~l~I~G~~G~GKStll~~~~~~~ 24 (166)
T PF05729_consen 1 RVLWISGEPGSGKSTLLRKLAQQL 24 (166)
T ss_pred CEEEEECCCCCChHHHHHHHHHHH
Confidence 457899999999999999999765
No 263
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=97.59 E-value=0.0011 Score=77.27 Aligned_cols=60 Identities=17% Similarity=0.223 Sum_probs=43.4
Q ss_pred eeeccCCCCccccccChhhHHHHHHHHHHHHhCHHHHHHhCCCCCceeEEeCCCCCcHHHHHHHHHHHcCC
Q 035603 183 HVYFEHPATFDTLAMASKKKEAIKKDLIKFTEGKEYYAKIGKAWKRGYLLFGPPGTGKSTMIAAMANCLNY 253 (431)
Q Consensus 183 ~~~~~~p~~f~~l~g~~~~k~~i~~~l~~~~~~~~~~~~~g~~~~rg~LL~GPPGtGKTsla~aiA~~l~~ 253 (431)
.+...++..+++++|.++..++|...+. .+....+-+-++||+|+||||||+++++.+..
T Consensus 174 ~l~~~~~~~~~~~vG~~~~l~~l~~lL~-----------l~~~~~~vvgI~G~gGiGKTTLA~~l~~~l~~ 233 (1153)
T PLN03210 174 KLNLTPSNDFEDFVGIEDHIAKMSSLLH-----------LESEEVRMVGIWGSSGIGKTTIARALFSRLSR 233 (1153)
T ss_pred hhccccCcccccccchHHHHHHHHHHHc-----------cccCceEEEEEEcCCCCchHHHHHHHHHHHhh
Confidence 3344456778889998877777655432 12334567889999999999999999887654
No 264
>PRK14532 adenylate kinase; Provisional
Probab=97.58 E-value=6e-05 Score=69.06 Aligned_cols=115 Identities=16% Similarity=0.230 Sum_probs=60.2
Q ss_pred eeEEeCCCCCcHHHHHHHHHHHcCCCeEEec-ccC--cC----ChHHHHHHHHHhhhcccchhhHHHHHHHHhcCcccCC
Q 035603 229 GYLLFGPPGTGKSTMIAAMANCLNYDVYDLE-LTS--VE----NNNELRSLLVDISSKKKKSNVTLSGLLNCIGGLWSTC 301 (431)
Q Consensus 229 g~LL~GPPGtGKTsla~aiA~~l~~~i~~l~-~~~--~~----~~~~l~~l~~~~~~~~~~~~~~~s~lL~~ldg~~~~~ 301 (431)
.++|.||||+|||++++.||..+|+.++..+ +-. +. ....+..++.. ...-....+...+...+.... +
T Consensus 2 ~i~~~G~pGsGKsT~a~~la~~~g~~~is~~d~lr~~~~~~~~~~~~~~~~~~~--g~~~~~~~~~~~~~~~~~~~~--~ 77 (188)
T PRK14532 2 NLILFGPPAAGKGTQAKRLVEERGMVQLSTGDMLRAAIASGSELGQRVKGIMDR--GELVSDEIVIALIEERLPEAE--A 77 (188)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcCCeEEeCcHHHHHHHHcCCHHHHHHHHHHHC--CCccCHHHHHHHHHHHHhCcC--c
Confidence 3889999999999999999999998776542 100 10 11123333321 111112233333444444332 2
Q ss_pred CCceEEEEecC---CCCCCChhhhccC-ceeEEEEcCCCCHHHHHHHHHH
Q 035603 302 GGERIIVFTTN---HVDKLDPALIRRG-RMDKHIEMPYCCFEAFKVLAKN 347 (431)
Q Consensus 302 ~~~~ivI~TTN---~~~~Ld~AllRpG-Rfd~~I~~~~p~~~~r~~i~~~ 347 (431)
+.++++=+.-. ..+.++..+...| ..|..|.+..|.......+...
T Consensus 78 ~~g~vldg~pr~~~q~~~~~~~l~~~g~~pd~vi~L~v~~~~~~~Rl~~R 127 (188)
T PRK14532 78 AGGAIFDGFPRTVAQAEALDKMLASRGQKIDVVIRLKVDDEALIERIVKR 127 (188)
T ss_pred cCcEEEeCCCCCHHHHHHHHHHHHhcCCCCCEEEEEECCHHHHHHHHHcC
Confidence 33344433221 2223333333332 4678888888877666555544
No 265
>TIGR01359 UMP_CMP_kin_fam UMP-CMP kinase family. This subfamily of the adenylate kinase superfamily contains examples of UMP-CMP kinase, as well as others proteins with unknown specificity, some currently designated adenylate kinase. All known members are eukaryotic.
Probab=97.57 E-value=6.5e-05 Score=68.36 Aligned_cols=29 Identities=24% Similarity=0.512 Sum_probs=25.6
Q ss_pred eEEeCCCCCcHHHHHHHHHHHcCCCeEEe
Q 035603 230 YLLFGPPGTGKSTMIAAMANCLNYDVYDL 258 (431)
Q Consensus 230 ~LL~GPPGtGKTsla~aiA~~l~~~i~~l 258 (431)
+++.||||+|||++++.||..+|+..+..
T Consensus 2 i~i~G~pGsGKst~a~~la~~~~~~~is~ 30 (183)
T TIGR01359 2 VFVLGGPGSGKGTQCAKIVENFGFTHLSA 30 (183)
T ss_pred EEEECCCCCCHHHHHHHHHHHcCCeEEEC
Confidence 68999999999999999999998765544
No 266
>PRK06217 hypothetical protein; Validated
Probab=97.57 E-value=6.8e-05 Score=68.59 Aligned_cols=102 Identities=16% Similarity=0.091 Sum_probs=56.8
Q ss_pred eeEEeCCCCCcHHHHHHHHHHHcCCCeEEecccCcCChHHHHHHHHHhhhcccchhhHHHHHHHHhcCcccCCCCceEEE
Q 035603 229 GYLLFGPPGTGKSTMIAAMANCLNYDVYDLELTSVENNNELRSLLVDISSKKKKSNVTLSGLLNCIGGLWSTCGGERIIV 308 (431)
Q Consensus 229 g~LL~GPPGtGKTsla~aiA~~l~~~i~~l~~~~~~~~~~l~~l~~~~~~~~~~~~~~~s~lL~~ldg~~~~~~~~~ivI 308 (431)
-|+|.|+||+||||++++||..+|++++++|.-.-.... .. + ............++..+. .++..||-
T Consensus 3 ~I~i~G~~GsGKSTla~~L~~~l~~~~~~~D~~~~~~~~-~~--~----~~~~~~~~~~~~~~~~~~-----~~~~~vi~ 70 (183)
T PRK06217 3 RIHITGASGSGTTTLGAALAERLDIPHLDTDDYFWLPTD-PP--F----TTKRPPEERLRLLLEDLR-----PREGWVLS 70 (183)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcCCcEEEcCceeeccCC-CC--c----cccCCHHHHHHHHHHHHh-----cCCCEEEE
Confidence 389999999999999999999999998877632211100 00 0 000011111222333331 12223333
Q ss_pred EecCCCCCCChhhhccCceeEEEEcCCCCHHHHHHHHHH
Q 035603 309 FTTNHVDKLDPALIRRGRMDKHIEMPYCCFEAFKVLAKN 347 (431)
Q Consensus 309 ~TTN~~~~Ld~AllRpGRfd~~I~~~~p~~~~r~~i~~~ 347 (431)
-+... ....+.. ++|..|.+..|.......+.+.
T Consensus 71 --G~~~~-~~~~~~~--~~d~~i~Ld~~~~~~~~Rl~~R 104 (183)
T PRK06217 71 --GSALG-WGDPLEP--LFDLVVFLTIPPELRLERLRLR 104 (183)
T ss_pred --ccHHH-HHHHHHh--hCCEEEEEECCHHHHHHHHHcC
Confidence 33332 1223333 7889999988877766666654
No 267
>COG0563 Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism]
Probab=97.57 E-value=0.00015 Score=66.28 Aligned_cols=28 Identities=39% Similarity=0.675 Sum_probs=23.9
Q ss_pred eeEEeCCCCCcHHHHHHHHHHHcCCCeE
Q 035603 229 GYLLFGPPGTGKSTMIAAMANCLNYDVY 256 (431)
Q Consensus 229 g~LL~GPPGtGKTsla~aiA~~l~~~i~ 256 (431)
-+++.||||+||||+|+.||+.++++-+
T Consensus 2 riiilG~pGaGK~T~A~~La~~~~i~hl 29 (178)
T COG0563 2 RILILGPPGAGKSTLAKKLAKKLGLPHL 29 (178)
T ss_pred eEEEECCCCCCHHHHHHHHHHHhCCcEE
Confidence 3789999999999999999999665444
No 268
>PF01637 Arch_ATPase: Archaeal ATPase; InterPro: IPR011579 This domain has been found in a number of bacterial and archaeal proteins, all of which contain a conserved P-loop motif that is involved in binding ATP.; GO: 0005524 ATP binding; PDB: 2FNA_A 2QEN_A.
Probab=97.56 E-value=0.00092 Score=62.31 Aligned_cols=26 Identities=35% Similarity=0.749 Sum_probs=23.7
Q ss_pred CceeEEeCCCCCcHHHHHHHHHHHcC
Q 035603 227 KRGYLLFGPPGTGKSTMIAAMANCLN 252 (431)
Q Consensus 227 ~rg~LL~GPPGtGKTsla~aiA~~l~ 252 (431)
...++|+||+|+|||+|++.+.+.+.
T Consensus 20 ~~~~~l~G~rg~GKTsLl~~~~~~~~ 45 (234)
T PF01637_consen 20 SQHILLYGPRGSGKTSLLKEFINELK 45 (234)
T ss_dssp SSEEEEEESTTSSHHHHHHHHHHHCT
T ss_pred CcEEEEEcCCcCCHHHHHHHHHHHhh
Confidence 46899999999999999999999884
No 269
>COG0606 Predicted ATPase with chaperone activity [Posttranslational modification, protein turnover, chaperones]
Probab=97.56 E-value=5.7e-05 Score=77.57 Aligned_cols=48 Identities=29% Similarity=0.487 Sum_probs=39.8
Q ss_pred CCCccccccChhhHHHHHHHHHHHHhCHHHHHHhCCCCCceeEEeCCCCCcHHHHHHHHHHHc
Q 035603 189 PATFDTLAMASKKKEAIKKDLIKFTEGKEYYAKIGKAWKRGYLLFGPPGTGKSTMIAAMANCL 251 (431)
Q Consensus 189 p~~f~~l~g~~~~k~~i~~~l~~~~~~~~~~~~~g~~~~rg~LL~GPPGtGKTsla~aiA~~l 251 (431)
...|.||.|++..|..+.-.. .-..++||+||||||||++|+.+..-|
T Consensus 175 ~~D~~DV~GQ~~AKrAleiAA---------------AGgHnLl~~GpPGtGKTmla~Rl~~lL 222 (490)
T COG0606 175 APDFKDVKGQEQAKRALEIAA---------------AGGHNLLLVGPPGTGKTMLASRLPGLL 222 (490)
T ss_pred CcchhhhcCcHHHHHHHHHHH---------------hcCCcEEEecCCCCchHHhhhhhcccC
Confidence 557999999999999885432 235689999999999999999998755
No 270
>cd02021 GntK Gluconate kinase (GntK) catalyzes the phosphoryl transfer from ATP to gluconate. The resulting product gluconate-6-phoshate is an important precursor of gluconate metabolism. GntK acts as a dimmer composed of two identical subunits.
Probab=97.55 E-value=6.9e-05 Score=65.95 Aligned_cols=29 Identities=34% Similarity=0.421 Sum_probs=25.7
Q ss_pred eEEeCCCCCcHHHHHHHHHHHcCCCeEEe
Q 035603 230 YLLFGPPGTGKSTMIAAMANCLNYDVYDL 258 (431)
Q Consensus 230 ~LL~GPPGtGKTsla~aiA~~l~~~i~~l 258 (431)
++|.||||+|||++++.++..++..+++.
T Consensus 2 i~l~G~~GsGKST~a~~l~~~~~~~~i~~ 30 (150)
T cd02021 2 IVVMGVSGSGKSTVGKALAERLGAPFIDG 30 (150)
T ss_pred EEEEcCCCCCHHHHHHHHHhhcCCEEEeC
Confidence 68999999999999999999998766644
No 271
>PRK11361 acetoacetate metabolism regulatory protein AtoC; Provisional
Probab=97.55 E-value=0.00099 Score=69.51 Aligned_cols=62 Identities=19% Similarity=0.195 Sum_probs=44.5
Q ss_pred ccccccChhhHHHHHHHHHHHHhCHHHHHHhCCCCCceeEEeCCCCCcHHHHHHHHHHHc---CCCeEEecccCcC
Q 035603 192 FDTLAMASKKKEAIKKDLIKFTEGKEYYAKIGKAWKRGYLLFGPPGTGKSTMIAAMANCL---NYDVYDLELTSVE 264 (431)
Q Consensus 192 f~~l~g~~~~k~~i~~~l~~~~~~~~~~~~~g~~~~rg~LL~GPPGtGKTsla~aiA~~l---~~~i~~l~~~~~~ 264 (431)
+..+++.......+.+.+..... ....+|++|++||||+++|+++.... +.+++.+++..+.
T Consensus 142 ~~~ii~~S~~~~~~~~~~~~~a~-----------~~~~vli~Ge~GtGK~~lA~~ih~~s~~~~~~~~~i~c~~~~ 206 (457)
T PRK11361 142 WGHILTNSPAMMDICKDTAKIAL-----------SQASVLISGESGTGKELIARAIHYNSRRAKGPFIKVNCAALP 206 (457)
T ss_pred ccceecccHHHhHHHHHHHHHcC-----------CCcEEEEEcCCCccHHHHHHHHHHhCCCCCCCeEEEECCCCC
Confidence 34456665555555554443333 23579999999999999999998764 4689999999874
No 272
>PRK14531 adenylate kinase; Provisional
Probab=97.55 E-value=8.2e-05 Score=68.10 Aligned_cols=31 Identities=29% Similarity=0.529 Sum_probs=27.5
Q ss_pred ceeEEeCCCCCcHHHHHHHHHHHcCCCeEEe
Q 035603 228 RGYLLFGPPGTGKSTMIAAMANCLNYDVYDL 258 (431)
Q Consensus 228 rg~LL~GPPGtGKTsla~aiA~~l~~~i~~l 258 (431)
+-+++.||||+|||++++.||..+|+..+..
T Consensus 3 ~~i~i~G~pGsGKsT~~~~la~~~g~~~is~ 33 (183)
T PRK14531 3 QRLLFLGPPGAGKGTQAARLCAAHGLRHLST 33 (183)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhCCCeEec
Confidence 4589999999999999999999999877654
No 273
>TIGR02915 PEP_resp_reg putative PEP-CTERM system response regulator. Members of this protein family share full-length homology with (but do not include) the acetoacetate metabolism regulatory protein AtoC. These proteins have a Fis family DNA binding sequence (pfam02954), a response regulator receiver domain (pfam00072), and sigma-54 interaction domain (pfam00158).
Probab=97.55 E-value=0.0013 Score=68.57 Aligned_cols=62 Identities=19% Similarity=0.270 Sum_probs=44.5
Q ss_pred ccccccChhhHHHHHHHHHHHHhCHHHHHHhCCCCCceeEEeCCCCCcHHHHHHHHHHHcC---CCeEEecccCcC
Q 035603 192 FDTLAMASKKKEAIKKDLIKFTEGKEYYAKIGKAWKRGYLLFGPPGTGKSTMIAAMANCLN---YDVYDLELTSVE 264 (431)
Q Consensus 192 f~~l~g~~~~k~~i~~~l~~~~~~~~~~~~~g~~~~rg~LL~GPPGtGKTsla~aiA~~l~---~~i~~l~~~~~~ 264 (431)
+..+++.....+.+.+.+.... .....++++|++||||+.+|+++..... .+++.+++..+.
T Consensus 138 ~~~lig~s~~~~~l~~~i~~~a-----------~~~~~vli~Ge~GtGK~~lA~~ih~~s~~~~~~~v~v~c~~~~ 202 (445)
T TIGR02915 138 LRGLITSSPGMQKICRTIEKIA-----------PSDITVLLLGESGTGKEVLARALHQLSDRKDKRFVAINCAAIP 202 (445)
T ss_pred ccceeecCHHHHHHHHHHHHHh-----------CCCCCEEEECCCCcCHHHHHHHHHHhCCcCCCCeEEEECCCCC
Confidence 4456666665555555443222 2245789999999999999999987654 589999999874
No 274
>cd02020 CMPK Cytidine monophosphate kinase (CMPK) catalyzes the reversible phosphorylation of cytidine monophosphate (CMP) to produce cytidine diphosphate (CDP), using ATP as the preferred phosphoryl donor.
Probab=97.54 E-value=7.5e-05 Score=65.01 Aligned_cols=30 Identities=33% Similarity=0.458 Sum_probs=28.2
Q ss_pred eEEeCCCCCcHHHHHHHHHHHcCCCeEEec
Q 035603 230 YLLFGPPGTGKSTMIAAMANCLNYDVYDLE 259 (431)
Q Consensus 230 ~LL~GPPGtGKTsla~aiA~~l~~~i~~l~ 259 (431)
+.+.||||||||++++.||..++++++..+
T Consensus 2 I~i~G~~GsGKst~a~~la~~~~~~~~~~~ 31 (147)
T cd02020 2 IAIDGPAGSGKSTVAKLLAKKLGLPYLDTG 31 (147)
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCceeccc
Confidence 678999999999999999999999998877
No 275
>PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins. TniB is a probable ATP-binding protein [] which is involved in Tn5053 mercury resistance transposition [].
Probab=97.54 E-value=0.0023 Score=62.78 Aligned_cols=170 Identities=16% Similarity=0.225 Sum_probs=91.7
Q ss_pred HHHHHHHHHHHHHHhhccce-eeccCCccccCCcceeeeccCCCCccccccChhhHHHHHHHHHHHHhCHHHHHHhCCCC
Q 035603 148 VNQVLEEGKAIAVRNRQRKL-YKNVPCQAWYEKKWSHVYFEHPATFDTLAMASKKKEAIKKDLIKFTEGKEYYAKIGKAW 226 (431)
Q Consensus 148 l~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~w~~~~~~~p~~f~~l~g~~~~k~~i~~~l~~~~~~~~~~~~~g~~~ 226 (431)
++|+...++.+.....+-+| |-. .+.|- |.+..+ ++.+.+...+..|. ..-
T Consensus 9 ~~HL~~~~~~~~~l~~~eRI~~i~-------~~rWI--------------gY~~A~-~~L~~L~~Ll~~P~------~~R 60 (302)
T PF05621_consen 9 YSHLHPDARELLQLSDEERIAYIR-------ADRWI--------------GYPRAK-EALDRLEELLEYPK------RHR 60 (302)
T ss_pred hhhcCHHHHHHHhcCHHHHHHHHh-------cCCee--------------cCHHHH-HHHHHHHHHHhCCc------ccC
Confidence 46777777777665544333 222 24574 333443 34455666666542 222
Q ss_pred CceeEEeCCCCCcHHHHHHHHHHHcC---------CCeEEecccCcCChHHHHHH-------------------------
Q 035603 227 KRGYLLFGPPGTGKSTMIAAMANCLN---------YDVYDLELTSVENNNELRSL------------------------- 272 (431)
Q Consensus 227 ~rg~LL~GPPGtGKTsla~aiA~~l~---------~~i~~l~~~~~~~~~~l~~l------------------------- 272 (431)
..++||+|++|.|||++++..+.... ++++.+.....-+...+-..
T Consensus 61 mp~lLivG~snnGKT~Ii~rF~~~hp~~~d~~~~~~PVv~vq~P~~p~~~~~Y~~IL~~lgaP~~~~~~~~~~~~~~~~l 140 (302)
T PF05621_consen 61 MPNLLIVGDSNNGKTMIIERFRRLHPPQSDEDAERIPVVYVQMPPEPDERRFYSAILEALGAPYRPRDRVAKLEQQVLRL 140 (302)
T ss_pred CCceEEecCCCCcHHHHHHHHHHHCCCCCCCCCccccEEEEecCCCCChHHHHHHHHHHhCcccCCCCCHHHHHHHHHHH
Confidence 35899999999999999999987542 35666655443232222211
Q ss_pred HHHhhhc----c------cchhhHHHHHHHHhcCcccCCCCceEEEEecC--CCCCCChhhhccCceeEEEEcCCCC-HH
Q 035603 273 LVDISSK----K------KKSNVTLSGLLNCIGGLWSTCGGERIIVFTTN--HVDKLDPALIRRGRMDKHIEMPYCC-FE 339 (431)
Q Consensus 273 ~~~~~~~----~------~~~~~~~s~lL~~ldg~~~~~~~~~ivI~TTN--~~~~Ld~AllRpGRfd~~I~~~~p~-~~ 339 (431)
|....-+ + ..+......+||.|..+.+...-.++.|+|-. +.=.-|+.|-+ ||+. +.+|.-. .+
T Consensus 141 lr~~~vrmLIIDE~H~lLaGs~~~qr~~Ln~LK~L~NeL~ipiV~vGt~~A~~al~~D~QLa~--RF~~-~~Lp~W~~d~ 217 (302)
T PF05621_consen 141 LRRLGVRMLIIDEFHNLLAGSYRKQREFLNALKFLGNELQIPIVGVGTREAYRALRTDPQLAS--RFEP-FELPRWELDE 217 (302)
T ss_pred HHHcCCcEEEeechHHHhcccHHHHHHHHHHHHHHhhccCCCeEEeccHHHHHHhccCHHHHh--ccCC-ccCCCCCCCc
Confidence 1111111 1 12233345566666655444443355566533 22345888888 9964 4445432 34
Q ss_pred HHHHHHHHh
Q 035603 340 AFKVLAKNY 348 (431)
Q Consensus 340 ~r~~i~~~~ 348 (431)
++..++..+
T Consensus 218 ef~~LL~s~ 226 (302)
T PF05621_consen 218 EFRRLLASF 226 (302)
T ss_pred HHHHHHHHH
Confidence 555555544
No 276
>PRK13946 shikimate kinase; Provisional
Probab=97.53 E-value=8e-05 Score=68.29 Aligned_cols=34 Identities=35% Similarity=0.438 Sum_probs=31.4
Q ss_pred CceeEEeCCCCCcHHHHHHHHHHHcCCCeEEecc
Q 035603 227 KRGYLLFGPPGTGKSTMIAAMANCLNYDVYDLEL 260 (431)
Q Consensus 227 ~rg~LL~GPPGtGKTsla~aiA~~l~~~i~~l~~ 260 (431)
++.++|.|+||||||++++.+|..+|+++++.|.
T Consensus 10 ~~~I~l~G~~GsGKsti~~~LA~~Lg~~~id~D~ 43 (184)
T PRK13946 10 KRTVVLVGLMGAGKSTVGRRLATMLGLPFLDADT 43 (184)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHcCCCeECcCH
Confidence 4679999999999999999999999999998874
No 277
>PRK04040 adenylate kinase; Provisional
Probab=97.53 E-value=0.00047 Score=63.58 Aligned_cols=30 Identities=27% Similarity=0.568 Sum_probs=25.8
Q ss_pred ceeEEeCCCCCcHHHHHHHHHHHc--CCCeEE
Q 035603 228 RGYLLFGPPGTGKSTMIAAMANCL--NYDVYD 257 (431)
Q Consensus 228 rg~LL~GPPGtGKTsla~aiA~~l--~~~i~~ 257 (431)
+-++++|+||||||++++.++..+ ++.++.
T Consensus 3 ~~i~v~G~pG~GKtt~~~~l~~~l~~~~~~~~ 34 (188)
T PRK04040 3 KVVVVTGVPGVGKTTVLNKALEKLKEDYKIVN 34 (188)
T ss_pred eEEEEEeCCCCCHHHHHHHHHHHhccCCeEEe
Confidence 468899999999999999999999 666543
No 278
>TIGR02237 recomb_radB DNA repair and recombination protein RadB. This family consists exclusively of archaeal RadB protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239) and DMC1 (TIGR02238), and archaeal RadA (TIGR02236).
Probab=97.53 E-value=0.00039 Score=64.74 Aligned_cols=50 Identities=18% Similarity=0.341 Sum_probs=38.7
Q ss_pred CCCCCceeEEeCCCCCcHHHHHHHHHHH---cCCCeEEecccCcCChHHHHHHH
Q 035603 223 GKAWKRGYLLFGPPGTGKSTMIAAMANC---LNYDVYDLELTSVENNNELRSLL 273 (431)
Q Consensus 223 g~~~~rg~LL~GPPGtGKTsla~aiA~~---l~~~i~~l~~~~~~~~~~l~~l~ 273 (431)
|+|...-++++||||||||+++..+|.. .+..++.++... .....+.++.
T Consensus 8 Gi~~g~i~~i~G~~GsGKT~l~~~~~~~~~~~g~~v~yi~~e~-~~~~rl~~~~ 60 (209)
T TIGR02237 8 GVERGTITQIYGPPGSGKTNICMILAVNAARQGKKVVYIDTEG-LSPERFKQIA 60 (209)
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEECCC-CCHHHHHHHH
Confidence 7888888999999999999999988854 366777787765 4555565554
No 279
>PRK08154 anaerobic benzoate catabolism transcriptional regulator; Reviewed
Probab=97.52 E-value=0.0002 Score=71.20 Aligned_cols=58 Identities=22% Similarity=0.264 Sum_probs=43.4
Q ss_pred cChhhHHHHHHHHHHHHhCHHHHHHhCCCCCceeEEeCCCCCcHHHHHHHHHHHcCCCeEEec
Q 035603 197 MASKKKEAIKKDLIKFTEGKEYYAKIGKAWKRGYLLFGPPGTGKSTMIAAMANCLNYDVYDLE 259 (431)
Q Consensus 197 g~~~~k~~i~~~l~~~~~~~~~~~~~g~~~~rg~LL~GPPGtGKTsla~aiA~~l~~~i~~l~ 259 (431)
.+++.++.+.+.+...+... .-+..+..+.|.|+||||||++++.+|..+|+++++++
T Consensus 108 l~~~~~~~~~~~l~~~~~~~-----~~~~~~~~I~l~G~~GsGKStvg~~La~~Lg~~~id~D 165 (309)
T PRK08154 108 ASPAQLARVRDALSGMLGAG-----RRAARRRRIALIGLRGAGKSTLGRMLAARLGVPFVELN 165 (309)
T ss_pred CCHHHHHHHHHHHHHHHhhh-----hhccCCCEEEEECCCCCCHHHHHHHHHHHcCCCEEeHH
Confidence 44555566666555544422 12455678999999999999999999999999999766
No 280
>cd01428 ADK Adenylate kinase (ADK) catalyzes the reversible phosphoryl transfer from adenosine triphosphates (ATP) to adenosine monophosphates (AMP) and to yield adenosine diphosphates (ADP). This enzyme is required for the biosynthesis of ADP and is essential for homeostasis of adenosine phosphates.
Probab=97.50 E-value=9.3e-05 Score=67.78 Aligned_cols=29 Identities=34% Similarity=0.563 Sum_probs=26.4
Q ss_pred eEEeCCCCCcHHHHHHHHHHHcCCCeEEe
Q 035603 230 YLLFGPPGTGKSTMIAAMANCLNYDVYDL 258 (431)
Q Consensus 230 ~LL~GPPGtGKTsla~aiA~~l~~~i~~l 258 (431)
+++.||||+|||++++.||..+|+.++.+
T Consensus 2 I~i~G~pGsGKst~a~~La~~~~~~~i~~ 30 (194)
T cd01428 2 ILLLGPPGSGKGTQAERLAKKYGLPHIST 30 (194)
T ss_pred EEEECCCCCCHHHHHHHHHHHcCCeEEEC
Confidence 78999999999999999999999877664
No 281
>PRK05057 aroK shikimate kinase I; Reviewed
Probab=97.49 E-value=0.00011 Score=66.60 Aligned_cols=34 Identities=44% Similarity=0.684 Sum_probs=30.9
Q ss_pred CceeEEeCCCCCcHHHHHHHHHHHcCCCeEEecc
Q 035603 227 KRGYLLFGPPGTGKSTMIAAMANCLNYDVYDLEL 260 (431)
Q Consensus 227 ~rg~LL~GPPGtGKTsla~aiA~~l~~~i~~l~~ 260 (431)
++.++|.||||+|||++++.+|+.+++++++.+.
T Consensus 4 ~~~I~liG~~GaGKStl~~~La~~l~~~~vd~D~ 37 (172)
T PRK05057 4 KRNIFLVGPMGAGKSTIGRQLAQQLNMEFYDSDQ 37 (172)
T ss_pred CCEEEEECCCCcCHHHHHHHHHHHcCCcEEECCc
Confidence 4569999999999999999999999999988774
No 282
>PRK13765 ATP-dependent protease Lon; Provisional
Probab=97.48 E-value=0.00021 Score=77.32 Aligned_cols=51 Identities=33% Similarity=0.417 Sum_probs=42.0
Q ss_pred CCCCccccccChhhHHHHHHHHHHHHhCHHHHHHhCCCCCceeEEeCCCCCcHHHHHHHHHHHcCC
Q 035603 188 HPATFDTLAMASKKKEAIKKDLIKFTEGKEYYAKIGKAWKRGYLLFGPPGTGKSTMIAAMANCLNY 253 (431)
Q Consensus 188 ~p~~f~~l~g~~~~k~~i~~~l~~~~~~~~~~~~~g~~~~rg~LL~GPPGtGKTsla~aiA~~l~~ 253 (431)
+|..|++|+|.++.++.|...+. .++.+||+||||||||++++++|..+..
T Consensus 26 ~~~~~~~vigq~~a~~~L~~~~~---------------~~~~~l~~G~~G~GKttla~~l~~~l~~ 76 (637)
T PRK13765 26 PERLIDQVIGQEHAVEVIKKAAK---------------QRRHVMMIGSPGTGKSMLAKAMAELLPK 76 (637)
T ss_pred CcccHHHcCChHHHHHHHHHHHH---------------hCCeEEEECCCCCcHHHHHHHHHHHcCh
Confidence 47889999999998887755432 1247999999999999999999998864
No 283
>KOG0478 consensus DNA replication licensing factor, MCM4 component [Replication, recombination and repair]
Probab=97.48 E-value=0.0026 Score=67.87 Aligned_cols=150 Identities=22% Similarity=0.250 Sum_probs=83.8
Q ss_pred ccccChhhHHHHHHHHHHHHhCHHHHHHhC-CCCCceeEEeCCCCCcHHHHHHHHHHHcCCCeEEecccC----c----C
Q 035603 194 TLAMASKKKEAIKKDLIKFTEGKEYYAKIG-KAWKRGYLLFGPPGTGKSTMIAAMANCLNYDVYDLELTS----V----E 264 (431)
Q Consensus 194 ~l~g~~~~k~~i~~~l~~~~~~~~~~~~~g-~~~~rg~LL~GPPGtGKTsla~aiA~~l~~~i~~l~~~~----~----~ 264 (431)
+|.+.+++|+.|+ +..|=.....+..-| ..-.-.+||+|.||||||.|.+-+++-+...+|.---.+ + .
T Consensus 430 sIye~edvKkglL--LqLfGGt~k~~~~~~~~R~~INILL~GDPGtsKSqlLqyv~~l~pRg~yTSGkGsSavGLTayVt 507 (804)
T KOG0478|consen 430 SIYELEDVKKGLL--LQLFGGTRKEDEKSGRFRGDINILLVGDPGTSKSQLLQYCHRLLPRGVYTSGKGSSAVGLTAYVT 507 (804)
T ss_pred hhhcccchhhhHH--HHHhcCCcccccccccccccceEEEecCCCcCHHHHHHHHHHhCCcceeecCCccchhcceeeEE
Confidence 4577788888774 334444444444433 111235899999999999999999998766655421111 0 0
Q ss_pred ChHHHHHHHHHhhhc-------------ccchhhHHHHHHHHhc---------CcccCCCCceEEEEecCCCC-------
Q 035603 265 NNNELRSLLVDISSK-------------KKKSNVTLSGLLNCIG---------GLWSTCGGERIIVFTTNHVD------- 315 (431)
Q Consensus 265 ~~~~l~~l~~~~~~~-------------~~~~~~~~s~lL~~ld---------g~~~~~~~~~ivI~TTN~~~------- 315 (431)
-..+-++++.+.... +.-+..+.+.|+..|. |+-..-+...=|+++.|..+
T Consensus 508 rd~dtkqlVLesGALVLSD~GiCCIDEFDKM~dStrSvLhEvMEQQTvSIAKAGII~sLNAR~SVLAaANP~~skynp~k 587 (804)
T KOG0478|consen 508 KDPDTRQLVLESGALVLSDNGICCIDEFDKMSDSTRSVLHEVMEQQTLSIAKAGIIASLNARCSVLAAANPIRSKYNPNK 587 (804)
T ss_pred ecCccceeeeecCcEEEcCCceEEchhhhhhhHHHHHHHHHHHHHhhhhHhhcceeeeccccceeeeeeccccccCCCCC
Confidence 001112222221111 2223345555666554 22222222345888888442
Q ss_pred ------CCChhhhccCceeEEE-EcCCCCHHHHHHHHHH
Q 035603 316 ------KLDPALIRRGRMDKHI-EMPYCCFEAFKVLAKN 347 (431)
Q Consensus 316 ------~Ld~AllRpGRfd~~I-~~~~p~~~~r~~i~~~ 347 (431)
.|+|.|++ |||... -+..|+...=+.|..+
T Consensus 588 ~i~eNI~LpptLLS--RFDLIylllD~~DE~~Dr~La~H 624 (804)
T KOG0478|consen 588 SIIENINLPPTLLS--RFDLIFLLLDKPDERSDRRLADH 624 (804)
T ss_pred chhhccCCChhhhh--hhcEEEEEecCcchhHHHHHHHH
Confidence 48899999 999875 4567776544444444
No 284
>PF00931 NB-ARC: NB-ARC domain; InterPro: IPR002182 This is the NB-ARC domain, a novel signalling motif found in bacteria and eukaryotes, shared by plant resistance gene products and regulators of cell death in animals []. This domain has been structurally characterised in the human protein apoptotic protease-activating factor 1 (Apaf-1) []. It contains the three-layered alpha-beta fold and subsequent short alpha-helical region characteristic of the AAA+ ATPase domain superfamily. While this domain is thought to bind and hyrolyse ATP, only ADP binding has been experimentally verified. It is proposed that binding and hydrolysis of ATP by this domain induces conformational changes the the overall protein, leading to formation of the apoptosome.; GO: 0043531 ADP binding; PDB: 3IZA_E 1Z6T_D 3SFZ_A 3SHF_A 1VT4_M 3IZ8_G 3LQR_A 2A5Y_C 3LQQ_A.
Probab=97.48 E-value=0.0012 Score=64.29 Aligned_cols=147 Identities=18% Similarity=0.129 Sum_probs=71.3
Q ss_pred CCCceeEEeCCCCCcHHHHHHHHHHH--cCC--C-eEEecccCcCChHH-HHHHHHHhhhc------ccchhhHHHHHHH
Q 035603 225 AWKRGYLLFGPPGTGKSTMIAAMANC--LNY--D-VYDLELTSVENNNE-LRSLLVDISSK------KKKSNVTLSGLLN 292 (431)
Q Consensus 225 ~~~rg~LL~GPPGtGKTsla~aiA~~--l~~--~-i~~l~~~~~~~~~~-l~~l~~~~~~~------~~~~~~~~s~lL~ 292 (431)
...+-+.|+|++|+|||+||..+++. ..- + ++.++.+...+... +..+....... ..........+.+
T Consensus 17 ~~~~~v~I~G~~G~GKT~LA~~~~~~~~~~~~f~~v~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~ 96 (287)
T PF00931_consen 17 NEVRVVAIVGMGGIGKTTLARQVARDLRIKNRFDGVIWVSLSKNPSLEQLLEQILRQLGEPDSSISDPKDIEELQDQLRE 96 (287)
T ss_dssp TSSEEEEEEESTTSSHHHHHHHHHCHHHHCCCCTEEEEEEEES-SCCHHHHHHHHHHHTCC-STSSCCSSHHHHHHHHHH
T ss_pred CCeEEEEEEcCCcCCcceeeeecccccccccccccccccccccccccccccccccccccccccccccccccccccccchh
Confidence 34567889999999999999999977 322 2 34455544332222 23333222111 0011111111111
Q ss_pred Hh---------cC------------cccCCCCceEEEEecCCCCCCChhhhccCceeEEEEcCCCCHHHHHHHHHHhhch
Q 035603 293 CI---------GG------------LWSTCGGERIIVFTTNHVDKLDPALIRRGRMDKHIEMPYCCFEAFKVLAKNYLEI 351 (431)
Q Consensus 293 ~l---------dg------------~~~~~~~~~ivI~TTN~~~~Ld~AllRpGRfd~~I~~~~p~~~~r~~i~~~~l~~ 351 (431)
.+ |+ .......+.-||.||...... ..+- .-+..++++..+.++-..++..+...
T Consensus 97 ~L~~~~~LlVlDdv~~~~~~~~l~~~~~~~~~~~kilvTTR~~~v~-~~~~---~~~~~~~l~~L~~~ea~~L~~~~~~~ 172 (287)
T PF00931_consen 97 LLKDKRCLLVLDDVWDEEDLEELREPLPSFSSGSKILVTTRDRSVA-GSLG---GTDKVIELEPLSEEEALELFKKRAGR 172 (287)
T ss_dssp HHCCTSEEEEEEEE-SHHHH-------HCHHSS-EEEEEESCGGGG-TTHH---SCEEEEECSS--HHHHHHHHHHHHTS
T ss_pred hhccccceeeeeeecccccccccccccccccccccccccccccccc-cccc---cccccccccccccccccccccccccc
Confidence 11 11 111111234566677653211 1111 12678999999999999999988754
Q ss_pred hc----chhHHHHHhHhccCCCCHHHHH
Q 035603 352 ES----HELFHEIGSLLGETDITPADVA 375 (431)
Q Consensus 352 ~~----~~~~~~i~~l~~~~~~s~adI~ 375 (431)
.. ....+...++++..+-.|--|.
T Consensus 173 ~~~~~~~~~~~~~~~i~~~c~glPLal~ 200 (287)
T PF00931_consen 173 KESESPEDLEDLAKEIVEKCGGLPLALK 200 (287)
T ss_dssp HS----TTSCTHHHHHHHHTTT-HHHHH
T ss_pred cccccccccccccccccccccccccccc
Confidence 43 1122233445554555666554
No 285
>KOG3347 consensus Predicted nucleotide kinase/nuclear protein involved oxidative stress response [Nucleotide transport and metabolism]
Probab=97.47 E-value=9.6e-05 Score=64.72 Aligned_cols=32 Identities=31% Similarity=0.529 Sum_probs=28.8
Q ss_pred ceeEEeCCCCCcHHHHHHHHHHHcCCCeEEec
Q 035603 228 RGYLLFGPPGTGKSTMIAAMANCLNYDVYDLE 259 (431)
Q Consensus 228 rg~LL~GPPGtGKTsla~aiA~~l~~~i~~l~ 259 (431)
..+|+.|-||||||+++..||..+|+..+.++
T Consensus 8 PNILvtGTPG~GKstl~~~lae~~~~~~i~is 39 (176)
T KOG3347|consen 8 PNILVTGTPGTGKSTLAERLAEKTGLEYIEIS 39 (176)
T ss_pred CCEEEeCCCCCCchhHHHHHHHHhCCceEehh
Confidence 47999999999999999999999999887653
No 286
>PRK03731 aroL shikimate kinase II; Reviewed
Probab=97.44 E-value=0.00014 Score=65.53 Aligned_cols=32 Identities=34% Similarity=0.532 Sum_probs=29.4
Q ss_pred eeEEeCCCCCcHHHHHHHHHHHcCCCeEEecc
Q 035603 229 GYLLFGPPGTGKSTMIAAMANCLNYDVYDLEL 260 (431)
Q Consensus 229 g~LL~GPPGtGKTsla~aiA~~l~~~i~~l~~ 260 (431)
.++|.|+||||||++++.+|..+|+++++.|.
T Consensus 4 ~i~~~G~~GsGKst~~~~la~~lg~~~~d~D~ 35 (171)
T PRK03731 4 PLFLVGARGCGKTTVGMALAQALGYRFVDTDQ 35 (171)
T ss_pred eEEEECCCCCCHHHHHHHHHHHhCCCEEEccH
Confidence 58899999999999999999999999998764
No 287
>PRK14529 adenylate kinase; Provisional
Probab=97.44 E-value=0.0003 Score=66.55 Aligned_cols=115 Identities=19% Similarity=0.206 Sum_probs=62.6
Q ss_pred eEEeCCCCCcHHHHHHHHHHHcCCCeEEec-c--cCcCChHHHHHHHHHhhhc--ccchhhHHHHHHHHhcCcccCCCCc
Q 035603 230 YLLFGPPGTGKSTMIAAMANCLNYDVYDLE-L--TSVENNNELRSLLVDISSK--KKKSNVTLSGLLNCIGGLWSTCGGE 304 (431)
Q Consensus 230 ~LL~GPPGtGKTsla~aiA~~l~~~i~~l~-~--~~~~~~~~l~~l~~~~~~~--~~~~~~~~s~lL~~ldg~~~~~~~~ 304 (431)
++|.||||+||||+++.||..+++..+... + ..+.....+...+...... --....+..-+.+.|.... ..+
T Consensus 3 I~l~G~PGsGK~T~a~~La~~~~~~~is~gdllr~~i~~~t~lg~~i~~~i~~G~lvpdei~~~lv~~~l~~~~---~~g 79 (223)
T PRK14529 3 ILIFGPNGSGKGTQGALVKKKYDLAHIESGAIFREHIGGGTELGKKAKEYIDRGDLVPDDITIPMILETLKQDG---KNG 79 (223)
T ss_pred EEEECCCCCCHHHHHHHHHHHHCCCCcccchhhhhhccCCChHHHHHHHHHhccCcchHHHHHHHHHHHHhccC---CCc
Confidence 789999999999999999999998765321 1 1111222222222222211 1123344555555655432 112
Q ss_pred eEEEE---ecCCCCCCChhhhccC-ceeEEEEcCCCCHHHHHHHHHH
Q 035603 305 RIIVF---TTNHVDKLDPALIRRG-RMDKHIEMPYCCFEAFKVLAKN 347 (431)
Q Consensus 305 ~ivI~---TTN~~~~Ld~AllRpG-Rfd~~I~~~~p~~~~r~~i~~~ 347 (431)
.|+=+ |.+..+.|+..+...| ..|..|++..|+......+...
T Consensus 80 ~iLDGfPRt~~Qa~~l~~~l~~~~~~~~~vi~l~~~~~~l~~Rl~~R 126 (223)
T PRK14529 80 WLLDGFPRNKVQAEKLWEALQKEGMKLDYVIEILLPREVAKNRIMGR 126 (223)
T ss_pred EEEeCCCCCHHHHHHHHHHHHhcCCCCCEEEEEECCHHHHHHHhhCC
Confidence 23222 3344444444443222 5778888888887766665544
No 288
>PRK15115 response regulator GlrR; Provisional
Probab=97.44 E-value=0.0014 Score=68.11 Aligned_cols=38 Identities=21% Similarity=0.314 Sum_probs=32.8
Q ss_pred CceeEEeCCCCCcHHHHHHHHHHHc---CCCeEEecccCcC
Q 035603 227 KRGYLLFGPPGTGKSTMIAAMANCL---NYDVYDLELTSVE 264 (431)
Q Consensus 227 ~rg~LL~GPPGtGKTsla~aiA~~l---~~~i~~l~~~~~~ 264 (431)
...++++|++|||||++|+++.... +.+++.+++..+.
T Consensus 157 ~~~vli~Ge~GtGk~~lA~~ih~~s~r~~~~f~~i~c~~~~ 197 (444)
T PRK15115 157 DVSVLINGQSGTGKEILAQAIHNASPRASKPFIAINCGALP 197 (444)
T ss_pred CCeEEEEcCCcchHHHHHHHHHHhcCCCCCCeEEEeCCCCC
Confidence 3569999999999999999998875 4689999999874
No 289
>PRK06762 hypothetical protein; Provisional
Probab=97.40 E-value=0.00018 Score=64.41 Aligned_cols=33 Identities=18% Similarity=0.287 Sum_probs=27.7
Q ss_pred CceeEEeCCCCCcHHHHHHHHHHHcCCCeEEec
Q 035603 227 KRGYLLFGPPGTGKSTMIAAMANCLNYDVYDLE 259 (431)
Q Consensus 227 ~rg~LL~GPPGtGKTsla~aiA~~l~~~i~~l~ 259 (431)
++-++|.|+||+|||++|+.++..++..++.++
T Consensus 2 ~~li~i~G~~GsGKST~A~~L~~~l~~~~~~i~ 34 (166)
T PRK06762 2 TTLIIIRGNSGSGKTTIAKQLQERLGRGTLLVS 34 (166)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCCCeEEec
Confidence 356889999999999999999999976665554
No 290
>PRK14530 adenylate kinase; Provisional
Probab=97.40 E-value=0.00016 Score=67.92 Aligned_cols=30 Identities=30% Similarity=0.483 Sum_probs=27.2
Q ss_pred eeEEeCCCCCcHHHHHHHHHHHcCCCeEEe
Q 035603 229 GYLLFGPPGTGKSTMIAAMANCLNYDVYDL 258 (431)
Q Consensus 229 g~LL~GPPGtGKTsla~aiA~~l~~~i~~l 258 (431)
-++|.||||+||||+++.||..+|++++..
T Consensus 5 ~I~i~G~pGsGKsT~~~~La~~~~~~~i~~ 34 (215)
T PRK14530 5 RILLLGAPGAGKGTQSSNLAEEFGVEHVTT 34 (215)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCeEEec
Confidence 589999999999999999999999887754
No 291
>PRK13808 adenylate kinase; Provisional
Probab=97.39 E-value=0.0016 Score=65.07 Aligned_cols=29 Identities=28% Similarity=0.502 Sum_probs=25.9
Q ss_pred eEEeCCCCCcHHHHHHHHHHHcCCCeEEe
Q 035603 230 YLLFGPPGTGKSTMIAAMANCLNYDVYDL 258 (431)
Q Consensus 230 ~LL~GPPGtGKTsla~aiA~~l~~~i~~l 258 (431)
|+|+||||+|||++++.||..+|+..+.+
T Consensus 3 Iiv~GpPGSGK~T~a~~LA~~ygl~~is~ 31 (333)
T PRK13808 3 LILLGPPGAGKGTQAQRLVQQYGIVQLST 31 (333)
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCceecc
Confidence 89999999999999999999998766554
No 292
>COG1102 Cmk Cytidylate kinase [Nucleotide transport and metabolism]
Probab=97.39 E-value=0.00014 Score=64.64 Aligned_cols=28 Identities=29% Similarity=0.511 Sum_probs=25.9
Q ss_pred eEEeCCCCCcHHHHHHHHHHHcCCCeEE
Q 035603 230 YLLFGPPGTGKSTMIAAMANCLNYDVYD 257 (431)
Q Consensus 230 ~LL~GPPGtGKTsla~aiA~~l~~~i~~ 257 (431)
+-+.|||||||||+++-||..+|++++.
T Consensus 3 ItIsG~pGsG~TTva~~lAe~~gl~~vs 30 (179)
T COG1102 3 ITISGLPGSGKTTVARELAEHLGLKLVS 30 (179)
T ss_pred EEeccCCCCChhHHHHHHHHHhCCceee
Confidence 5678999999999999999999999885
No 293
>PLN02674 adenylate kinase
Probab=97.39 E-value=0.00038 Score=66.72 Aligned_cols=118 Identities=16% Similarity=0.207 Sum_probs=62.4
Q ss_pred CceeEEeCCCCCcHHHHHHHHHHHcCCCeEEecccCc-----CChHHHHHHHHHhhhc--ccchhhHHHHHHHHhcCccc
Q 035603 227 KRGYLLFGPPGTGKSTMIAAMANCLNYDVYDLELTSV-----ENNNELRSLLVDISSK--KKKSNVTLSGLLNCIGGLWS 299 (431)
Q Consensus 227 ~rg~LL~GPPGtGKTsla~aiA~~l~~~i~~l~~~~~-----~~~~~l~~l~~~~~~~--~~~~~~~~s~lL~~ldg~~~ 299 (431)
...++|.||||+||||+++.||..+|+..+.. .++ .....+...+...... --....+..-+.+.|...
T Consensus 31 ~~~i~l~G~PGsGKgT~a~~La~~~~~~his~--GdllR~~i~~~s~~g~~i~~~~~~G~lvpd~iv~~lv~~~l~~~-- 106 (244)
T PLN02674 31 DKRLILIGPPGSGKGTQSPIIKDEYCLCHLAT--GDMLRAAVAAKTPLGIKAKEAMDKGELVSDDLVVGIIDEAMKKP-- 106 (244)
T ss_pred CceEEEECCCCCCHHHHHHHHHHHcCCcEEch--hHHHHHHHhccChhhHHHHHHHHcCCccCHHHHHHHHHHHHhCc--
Confidence 34689999999999999999999998765533 222 1111121111111111 112233344444555433
Q ss_pred CCCCceEEEE---ecCCCCCCChhhhcc-CceeEEEEcCCCCHHHHHHHHHHh
Q 035603 300 TCGGERIIVF---TTNHVDKLDPALIRR-GRMDKHIEMPYCCFEAFKVLAKNY 348 (431)
Q Consensus 300 ~~~~~~ivI~---TTN~~~~Ld~AllRp-GRfd~~I~~~~p~~~~r~~i~~~~ 348 (431)
.+..++|+=+ |.+..+.|+..+... ..+|..|++..|+......+....
T Consensus 107 ~~~~g~ilDGfPRt~~Qa~~l~~~l~~~~~~~d~vi~l~v~~~~l~~Rl~gR~ 159 (244)
T PLN02674 107 SCQKGFILDGFPRTVVQAQKLDEMLAKQGAKIDKVLNFAIDDAILEERITGRW 159 (244)
T ss_pred CcCCcEEEeCCCCCHHHHHHHHHHHHhcCCCCCEEEEEECCHHHHHHHHhccc
Confidence 1222233333 223334444444322 257888888888776666665443
No 294
>PHA00729 NTP-binding motif containing protein
Probab=97.38 E-value=0.00011 Score=69.36 Aligned_cols=29 Identities=24% Similarity=0.482 Sum_probs=25.1
Q ss_pred eeEEeCCCCCcHHHHHHHHHHHcCCCeEE
Q 035603 229 GYLLFGPPGTGKSTMIAAMANCLNYDVYD 257 (431)
Q Consensus 229 g~LL~GPPGtGKTsla~aiA~~l~~~i~~ 257 (431)
.++++||||||||++|.+||..++..+..
T Consensus 19 nIlItG~pGvGKT~LA~aLa~~l~~~l~~ 47 (226)
T PHA00729 19 SAVIFGKQGSGKTTYALKVARDVFWKLNN 47 (226)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHhhccc
Confidence 69999999999999999999998744443
No 295
>PHA02774 E1; Provisional
Probab=97.37 E-value=0.00032 Score=74.21 Aligned_cols=38 Identities=29% Similarity=0.495 Sum_probs=32.0
Q ss_pred CCCCCceeEEeCCCCCcHHHHHHHHHHHcCCCeEE-ecc
Q 035603 223 GKAWKRGYLLFGPPGTGKSTMIAAMANCLNYDVYD-LEL 260 (431)
Q Consensus 223 g~~~~rg~LL~GPPGtGKTsla~aiA~~l~~~i~~-l~~ 260 (431)
|+|.+++++||||||||||+++.+|++.++-.++. +|.
T Consensus 430 ~~PKknciv~~GPP~TGKS~fa~sL~~~L~G~vi~fvN~ 468 (613)
T PHA02774 430 GIPKKNCLVIYGPPDTGKSMFCMSLIKFLKGKVISFVNS 468 (613)
T ss_pred cCCcccEEEEECCCCCCHHHHHHHHHHHhCCCEEEEEEC
Confidence 67777899999999999999999999999765544 443
No 296
>COG5245 DYN1 Dynein, heavy chain [Cytoskeleton]
Probab=97.37 E-value=0.0011 Score=75.64 Aligned_cols=122 Identities=18% Similarity=0.210 Sum_probs=78.3
Q ss_pred CCceeEEeCCCCCcHHHH-HHHHHHHcCCCeEEecccCcCChHHHHHHHHHhhhc-------------------------
Q 035603 226 WKRGYLLFGPPGTGKSTM-IAAMANCLNYDVYDLELTSVENNNELRSLLVDISSK------------------------- 279 (431)
Q Consensus 226 ~~rg~LL~GPPGtGKTsl-a~aiA~~l~~~i~~l~~~~~~~~~~l~~l~~~~~~~------------------------- 279 (431)
..|||+++||||+|||+| .-++-+++-.++..+|.+.......+-..+.+....
T Consensus 1493 t~R~~i~cGppGSgK~mlM~~sLrs~~~~ev~~~Nfs~~t~T~s~ls~Ler~t~yy~~tg~~~l~PK~~vK~lVLFcDeI 1572 (3164)
T COG5245 1493 TLRSYIYCGPPGSGKEMLMCPSLRSELITEVKYFNFSTCTMTPSKLSVLERETEYYPNTGVVRLYPKPVVKDLVLFCDEI 1572 (3164)
T ss_pred ccceEEEECCCCCccchhcchhhhhhhheeeeEEeeccccCCHHHHHHHHhhceeeccCCeEEEccCcchhheEEEeecc
Confidence 468999999999999995 568999999999999988775444344444333221
Q ss_pred -----c---cchhhHHHHHHHHhcCcccCCC------CceEEEEecCCCCCC-----ChhhhccCceeEEEEcCCCCHHH
Q 035603 280 -----K---KKSNVTLSGLLNCIGGLWSTCG------GERIIVFTTNHVDKL-----DPALIRRGRMDKHIEMPYCCFEA 340 (431)
Q Consensus 280 -----~---~~~~~~~s~lL~~ldg~~~~~~------~~~ivI~TTN~~~~L-----d~AllRpGRfd~~I~~~~p~~~~ 340 (431)
. ...-..+-.-|-+-.|+|+... .++++.+++|.+... +..++|. ...|++.||....
T Consensus 1573 nLp~~~~y~~~~vI~FlR~l~e~QGfw~s~~~~wvTI~~i~l~Gacnp~td~gRv~~~eRf~r~---~v~vf~~ype~~S 1649 (3164)
T COG5245 1573 NLPYGFEYYPPTVIVFLRPLVERQGFWSSIAVSWVTICGIILYGACNPGTDEGRVKYYERFIRK---PVFVFCCYPELAS 1649 (3164)
T ss_pred CCccccccCCCceEEeeHHHHHhcccccchhhhHhhhcceEEEccCCCCCCcccCccHHHHhcC---ceEEEecCcchhh
Confidence 0 0111111111223356665432 247889999977532 3455552 3678899999888
Q ss_pred HHHHHHHhhc
Q 035603 341 FKVLAKNYLE 350 (431)
Q Consensus 341 r~~i~~~~l~ 350 (431)
..+|...++.
T Consensus 1650 L~~Iyea~l~ 1659 (3164)
T COG5245 1650 LRNIYEAVLM 1659 (3164)
T ss_pred HHHHHHHHHH
Confidence 8877776654
No 297
>PF10443 RNA12: RNA12 protein; InterPro: IPR018850 Mitochondrial escape protein 2 (also known as RNA12) plays a role in maintaining the mitochondrial genome and in controlling mtDNA escape [, ]. It is also involved in the regulation of mtDNA nucleotide structure and number []. Additionally, this protein have a dispensable role in the early maturation of pre-rRNA [].
Probab=97.36 E-value=0.0027 Score=65.02 Aligned_cols=90 Identities=17% Similarity=0.194 Sum_probs=61.0
Q ss_pred EEEecCCC---CCCChhhhccCceeEEEEcCCCCHHHHHHHHHHhhchhc---------------------chhHHHHHh
Q 035603 307 IVFTTNHV---DKLDPALIRRGRMDKHIEMPYCCFEAFKVLAKNYLEIES---------------------HELFHEIGS 362 (431)
Q Consensus 307 vI~TTN~~---~~Ld~AllRpGRfd~~I~~~~p~~~~r~~i~~~~l~~~~---------------------~~~~~~i~~ 362 (431)
|||.|+.+ ..|..|| |.|.-..|.++-++.+.-+..+...|.... .....++..
T Consensus 186 VIFlT~dv~~~k~LskaL--Pn~vf~tI~L~Das~~~Ak~yV~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~eld~ 263 (431)
T PF10443_consen 186 VIFLTDDVSYSKPLSKAL--PNRVFKTISLSDASPESAKQYVLSQLDEDTEDSSDSKESNEQNKNDKSAENEKDLAELDE 263 (431)
T ss_pred EEEECCCCchhhhHHHhC--CCCceeEEeecCCCHHHHHHHHHHHhcccccccccccccccccccccccccccchHHHHH
Confidence 45555433 4567777 668889999999999998888888886431 123445555
Q ss_pred HhccCCCCHHHHHHHhcccCCCCCHHHHHHHHHHHH
Q 035603 363 LLGETDITPADVAENLMPKSDEDDAGTCLKNLIEAL 398 (431)
Q Consensus 363 l~~~~~~s~adI~~~l~~~~~~~~~~~~l~~l~~~l 398 (431)
.++..|==..|++-++..-....+|..|++++|..-
T Consensus 264 ~i~~LGGRltDLe~lvrRiksGe~p~~Av~~iI~qs 299 (431)
T PF10443_consen 264 CIEPLGGRLTDLEFLVRRIKSGESPEEAVEEIISQS 299 (431)
T ss_pred HHHHcCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 555445445677666555457889999999887543
No 298
>PRK02496 adk adenylate kinase; Provisional
Probab=97.35 E-value=0.00017 Score=65.79 Aligned_cols=29 Identities=31% Similarity=0.598 Sum_probs=26.5
Q ss_pred eEEeCCCCCcHHHHHHHHHHHcCCCeEEe
Q 035603 230 YLLFGPPGTGKSTMIAAMANCLNYDVYDL 258 (431)
Q Consensus 230 ~LL~GPPGtGKTsla~aiA~~l~~~i~~l 258 (431)
+++.||||+|||++++.||..+++..+..
T Consensus 4 i~i~G~pGsGKst~a~~la~~~~~~~i~~ 32 (184)
T PRK02496 4 LIFLGPPGAGKGTQAVVLAEHLHIPHIST 32 (184)
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCcEEEh
Confidence 88999999999999999999999877654
No 299
>KOG2680 consensus DNA helicase TIP49, TBP-interacting protein [Transcription]
Probab=97.35 E-value=0.0013 Score=63.86 Aligned_cols=41 Identities=29% Similarity=0.481 Sum_probs=33.9
Q ss_pred CCCCCceeEEeCCCCCcHHHHHHHHHHHcCC--CeEEecccCc
Q 035603 223 GKAWKRGYLLFGPPGTGKSTMIAAMANCLNY--DVYDLELTSV 263 (431)
Q Consensus 223 g~~~~rg~LL~GPPGtGKTsla~aiA~~l~~--~i~~l~~~~~ 263 (431)
|.-..|.+|+-|+||||||-+|-.+|+.||- +|..+..+++
T Consensus 62 gkiaGraiLiaG~pgtGKtAiAmg~sksLG~~tpF~~i~gSEI 104 (454)
T KOG2680|consen 62 GKIAGRAILIAGQPGTGKTAIAMGMSKSLGDDTPFTSISGSEI 104 (454)
T ss_pred CcccceEEEEecCCCCCceeeeeehhhhhCCCCceeeeeccee
Confidence 5556789999999999999999999999985 5666655554
No 300
>TIGR01818 ntrC nitrogen regulation protein NR(I). This model represents NtrC, a DNA-binding response regulator that is phosphorylated by NtrB and interacts with sigma-54. NtrC usually controls the expression of glutamine synthase, GlnA, and may be called GlnL, GlnG, etc.
Probab=97.35 E-value=0.0032 Score=65.81 Aligned_cols=144 Identities=19% Similarity=0.213 Sum_probs=85.6
Q ss_pred cccccChhhHHHHHHHHHHHHhCHHHHHHhCCCCCceeEEeCCCCCcHHHHHHHHHHHc---CCCeEEecccCcCChHHH
Q 035603 193 DTLAMASKKKEAIKKDLIKFTEGKEYYAKIGKAWKRGYLLFGPPGTGKSTMIAAMANCL---NYDVYDLELTSVENNNEL 269 (431)
Q Consensus 193 ~~l~g~~~~k~~i~~~l~~~~~~~~~~~~~g~~~~rg~LL~GPPGtGKTsla~aiA~~l---~~~i~~l~~~~~~~~~~l 269 (431)
..+++......++.+.+..... ....+++.|.+||||+++|+++.... +.+++.+++..+. .+.+
T Consensus 134 ~~lig~s~~~~~v~~~i~~~a~-----------~~~~vli~Ge~GtGK~~~A~~ih~~~~~~~~~~~~~~c~~~~-~~~~ 201 (463)
T TIGR01818 134 AELIGEAPAMQEVFRAIGRLSR-----------SDITVLINGESGTGKELVARALHRHSPRANGPFIALNMAAIP-KDLI 201 (463)
T ss_pred cceeecCHHHHHHHHHHHHHhC-----------cCCeEEEECCCCCCHHHHHHHHHHhCCCCCCCeEEEeCCCCC-HHHH
Confidence 4567777766666665544222 23578999999999999999998764 4689999998873 3333
Q ss_pred HH-HHHHhhh------------------c-------ccchhhHHHHHHHHhcCcc-cCCC------CceEEEEecCCC--
Q 035603 270 RS-LLVDISS------------------K-------KKKSNVTLSGLLNCIGGLW-STCG------GERIIVFTTNHV-- 314 (431)
Q Consensus 270 ~~-l~~~~~~------------------~-------~~~~~~~~s~lL~~ldg~~-~~~~------~~~ivI~TTN~~-- 314 (431)
.. +|..... . +.-+......|++.++.-. ...+ -++-||+|||..
T Consensus 202 ~~~lfg~~~~~~~~~~~~~~g~~~~a~~gtl~l~ei~~l~~~~q~~ll~~l~~~~~~~~~~~~~~~~~~rii~~~~~~l~ 281 (463)
T TIGR01818 202 ESELFGHEKGAFTGANTRRQGRFEQADGGTLFLDEIGDMPLDAQTRLLRVLADGEFYRVGGRTPIKVDVRIVAATHQNLE 281 (463)
T ss_pred HHHhcCCCCCCCCCcccCCCCcEEECCCCeEEEEchhhCCHHHHHHHHHHHhcCcEEECCCCceeeeeeEEEEeCCCCHH
Confidence 33 3321110 0 1223344566777665321 1001 124567777643
Q ss_pred -----CCCChhhhccCcee-EEEEcCCCC--HHHHHHHHHHhhc
Q 035603 315 -----DKLDPALIRRGRMD-KHIEMPYCC--FEAFKVLAKNYLE 350 (431)
Q Consensus 315 -----~~Ld~AllRpGRfd-~~I~~~~p~--~~~r~~i~~~~l~ 350 (431)
..+.+.|.. |+. .+|++|+.. .+....++..|+.
T Consensus 282 ~~~~~~~f~~~L~~--rl~~~~i~lPpLr~R~~Di~~l~~~~l~ 323 (463)
T TIGR01818 282 ALVRQGKFREDLFH--RLNVIRIHLPPLRERREDIPRLARHFLA 323 (463)
T ss_pred HHHHcCCcHHHHHH--HhCcceecCCCcccchhhHHHHHHHHHH
Confidence 234445554 443 478888776 5667777777764
No 301
>TIGR01360 aden_kin_iso1 adenylate kinase, isozyme 1 subfamily. Members of this family are adenylate kinase, EC 2.7.4.3. This clade is found only in eukaryotes and includes human adenylate kinase isozyme 1 (myokinase). Within the adenylate kinase superfamily, this set appears specifically closely related to a subfamily of eukaryotic UMP-CMP kinases (TIGR01359), rather than to the large clade of bacterial, archaeal, and eukaryotic adenylate kinase family members in TIGR01351.
Probab=97.33 E-value=0.0002 Score=65.22 Aligned_cols=30 Identities=20% Similarity=0.379 Sum_probs=26.5
Q ss_pred eeEEeCCCCCcHHHHHHHHHHHcCCCeEEe
Q 035603 229 GYLLFGPPGTGKSTMIAAMANCLNYDVYDL 258 (431)
Q Consensus 229 g~LL~GPPGtGKTsla~aiA~~l~~~i~~l 258 (431)
-+++.||||+||||+++.+|..+|+..+..
T Consensus 5 ii~i~G~~GsGKsTl~~~l~~~~g~~~~~~ 34 (188)
T TIGR01360 5 IIFIVGGPGSGKGTQCEKIVEKYGFTHLST 34 (188)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCcEEeH
Confidence 578999999999999999999998776654
No 302
>PF13245 AAA_19: Part of AAA domain
Probab=97.33 E-value=0.00033 Score=54.83 Aligned_cols=33 Identities=42% Similarity=0.619 Sum_probs=22.5
Q ss_pred eeEEeCCCCCcHH-HHHHHHHHHc------CCCeEEeccc
Q 035603 229 GYLLFGPPGTGKS-TMIAAMANCL------NYDVYDLELT 261 (431)
Q Consensus 229 g~LL~GPPGtGKT-sla~aiA~~l------~~~i~~l~~~ 261 (431)
-+++.|||||||| +++++++..+ +-.+..+..+
T Consensus 12 ~~vv~g~pGtGKT~~~~~~i~~l~~~~~~~~~~vlv~a~t 51 (76)
T PF13245_consen 12 LFVVQGPPGTGKTTTLAARIAELLAARADPGKRVLVLAPT 51 (76)
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHHHhcCCCCeEEEECCC
Confidence 3556999999999 5666666655 4456655444
No 303
>PRK14528 adenylate kinase; Provisional
Probab=97.33 E-value=0.00022 Score=65.61 Aligned_cols=30 Identities=27% Similarity=0.526 Sum_probs=26.9
Q ss_pred eeEEeCCCCCcHHHHHHHHHHHcCCCeEEe
Q 035603 229 GYLLFGPPGTGKSTMIAAMANCLNYDVYDL 258 (431)
Q Consensus 229 g~LL~GPPGtGKTsla~aiA~~l~~~i~~l 258 (431)
-+++.||||+|||++++.+|..+|++.+..
T Consensus 3 ~i~i~G~pGsGKtt~a~~la~~~~~~~is~ 32 (186)
T PRK14528 3 NIIFMGPPGAGKGTQAKILCERLSIPQIST 32 (186)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCCeeeC
Confidence 489999999999999999999999887654
No 304
>cd00227 CPT Chloramphenicol (Cm) phosphotransferase (CPT). Cm-inactivating enzyme; modifies the primary (C-3) hydroxyl of the antibiotic. Related structurally to shikimate kinase II.
Probab=97.32 E-value=0.0002 Score=64.99 Aligned_cols=32 Identities=25% Similarity=0.308 Sum_probs=27.5
Q ss_pred ceeEEeCCCCCcHHHHHHHHHHHcCCCeEEec
Q 035603 228 RGYLLFGPPGTGKSTMIAAMANCLNYDVYDLE 259 (431)
Q Consensus 228 rg~LL~GPPGtGKTsla~aiA~~l~~~i~~l~ 259 (431)
+-++|.||||+||||++++++..++..++.++
T Consensus 3 ~~i~l~G~~gsGKst~a~~l~~~~~~~~~~~~ 34 (175)
T cd00227 3 RIIILNGGSSAGKSSIARALQSVLAEPWLHFG 34 (175)
T ss_pred CEEEEECCCCCCHHHHHHHHHHhhCCCccccC
Confidence 56899999999999999999999887766443
No 305
>PF00910 RNA_helicase: RNA helicase; InterPro: IPR000605 Helicases have been classified in 5 superfamilies (SF1-SF5). All of the proteins bind ATP and, consequently, all of them carry the classical Walker A (phosphate-binding loop or P-loop) and Walker B (Mg2+-binding aspartic acid) motifs. Superfamily 3 consists of helicases encoded mainly by small DNA viruses and some large nucleocytoplasmic DNA viruses [, ]. Small viruses are very dependent on the host-cell machinery to replicate. SF3 helicase in small viruses is associated with an origin-binding domain. By pairing a domain that recognises the ori with a helicase, the virus can bypass the host-cell-based regulation pathway and initiate its own replication. The protein binds to the viral ori leading to origin unwinding. Cellular replication proteins are then recruited to the ori and the viral DNA is replicated. In SF3 helicases the Walker A and Walker B motifs are separated by spacers of rather uniform, and relatively short, length. In addition to the A and B motifs this family is characterised by a third motif (C) which resides between the B motif and the C terminus of the conserved region. This motif consists of an Asn residue preceded by a run of hydrophobic residues []. Several structures of SF3 helicases have been solved []. They all possess the same core alpha/beta fold, consisting of a five-stranded parallel beta sheet flanked on both sides by several alpha helices. In contrast to SF1 and SF2 helicases, which have RecA-like core folds, the strand connectivity within the alpha/beta core domain is that of AAA+ proteins []. The SF3 helicase proteins assemble into a hexameric ring. Some proteins known to contain an SF3 helicase domain are listed below: Polyomavirus large T antigen. It initiates DNA unwinding and replication via interactions with the viral origin of replication. Papillomavirus E1 protein. An ATP-dependent DNA helicase required for initiation of viral DNA replication. Parvovirus Rep/NS1 protein, which is also required for the initiation of viral replication. Poxviridae and other large DNA viruses D5 protein. Bacteriophage DNA primase/helicase protein. Bacterial prophage DNA primase/helicase protein. The entry represents the core alpha/beta fold of the SF3 helicase domain found predominantly in DNA viruses.; GO: 0003723 RNA binding, 0003724 RNA helicase activity
Probab=97.32 E-value=0.00015 Score=60.46 Aligned_cols=23 Identities=43% Similarity=0.785 Sum_probs=20.6
Q ss_pred eEEeCCCCCcHHHHHHHHHHHcC
Q 035603 230 YLLFGPPGTGKSTMIAAMANCLN 252 (431)
Q Consensus 230 ~LL~GPPGtGKTsla~aiA~~l~ 252 (431)
+.||||||+|||++++.||..+.
T Consensus 1 I~i~G~~G~GKS~l~~~l~~~l~ 23 (107)
T PF00910_consen 1 IWIYGPPGIGKSTLAKELAKDLL 23 (107)
T ss_pred CEEECCCCCCHHHHHHHHHHHHH
Confidence 57999999999999999998765
No 306
>PRK14737 gmk guanylate kinase; Provisional
Probab=97.31 E-value=0.00089 Score=61.63 Aligned_cols=26 Identities=27% Similarity=0.354 Sum_probs=23.2
Q ss_pred CCceeEEeCCCCCcHHHHHHHHHHHc
Q 035603 226 WKRGYLLFGPPGTGKSTMIAAMANCL 251 (431)
Q Consensus 226 ~~rg~LL~GPPGtGKTsla~aiA~~l 251 (431)
.++-++|.||||+|||+|++.+....
T Consensus 3 ~~~~ivl~GpsG~GK~tl~~~l~~~~ 28 (186)
T PRK14737 3 SPKLFIISSVAGGGKSTIIQALLEEH 28 (186)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHhcC
Confidence 45678999999999999999998876
No 307
>cd01123 Rad51_DMC1_radA Rad51_DMC1_radA,B. This group of recombinases includes the eukaryotic proteins RAD51, RAD55/57 and the meiosis-specific protein DMC1, and the archaeal proteins radA and radB. They are closely related to the bacterial RecA group. Rad51 proteins catalyze a similiar recombination reaction as RecA, using ATP-dependent DNA binding activity and a DNA-dependent ATPase. However, this reaction is less efficient and requires accessory proteins such as RAD55/57 .
Probab=97.30 E-value=0.0011 Score=62.76 Aligned_cols=51 Identities=16% Similarity=0.170 Sum_probs=36.6
Q ss_pred CCCCCceeEEeCCCCCcHHHHHHHHHHHc---------CCCeEEecccCcCChHHHHHHH
Q 035603 223 GKAWKRGYLLFGPPGTGKSTMIAAMANCL---------NYDVYDLELTSVENNNELRSLL 273 (431)
Q Consensus 223 g~~~~rg~LL~GPPGtGKTsla~aiA~~l---------~~~i~~l~~~~~~~~~~l~~l~ 273 (431)
|++...-+.|+||||||||+++..+|... +..++.++...-.....+.++.
T Consensus 15 Gi~~g~i~~i~G~~GsGKT~l~~~l~~~~~~~~~~~g~~~~viyi~~e~~~~~~rl~~~~ 74 (235)
T cd01123 15 GIETGSITEIFGEFGSGKTQLCHQLAVTVQLPIELGGLEGKAVYIDTEGTFRPERLVQIA 74 (235)
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHHHeeCccccCCCCccEEEEeCCCCcCHHHHHHHH
Confidence 67777888999999999999999997543 2466666665533345555544
No 308
>PRK06547 hypothetical protein; Provisional
Probab=97.30 E-value=0.00025 Score=64.46 Aligned_cols=34 Identities=26% Similarity=0.401 Sum_probs=29.6
Q ss_pred CCceeEEeCCCCCcHHHHHHHHHHHcCCCeEEec
Q 035603 226 WKRGYLLFGPPGTGKSTMIAAMANCLNYDVYDLE 259 (431)
Q Consensus 226 ~~rg~LL~GPPGtGKTsla~aiA~~l~~~i~~l~ 259 (431)
.+.-+++.||||||||++++.+|..++..++.++
T Consensus 14 ~~~~i~i~G~~GsGKTt~a~~l~~~~~~~~~~~d 47 (172)
T PRK06547 14 GMITVLIDGRSGSGKTTLAGALAARTGFQLVHLD 47 (172)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHhCCCeeccc
Confidence 3567889999999999999999999998877665
No 309
>PRK14021 bifunctional shikimate kinase/3-dehydroquinate synthase; Provisional
Probab=97.28 E-value=0.00027 Score=75.58 Aligned_cols=53 Identities=19% Similarity=0.255 Sum_probs=38.4
Q ss_pred CCCCc-eeEEeCCCCCcHHHHHHHHHHHcCCCeEEecccCc-CChHHHHHHHHHh
Q 035603 224 KAWKR-GYLLFGPPGTGKSTMIAAMANCLNYDVYDLELTSV-ENNNELRSLLVDI 276 (431)
Q Consensus 224 ~~~~r-g~LL~GPPGtGKTsla~aiA~~l~~~i~~l~~~~~-~~~~~l~~l~~~~ 276 (431)
.|.++ -++|.|+||+|||++++.+|..||++|+++|..-. .....+.++|.+.
T Consensus 2 ~~~~~~~i~LiG~~GaGKttvg~~LA~~L~~~fiD~D~~ie~~~g~si~eif~~~ 56 (542)
T PRK14021 2 KPTRRPQAVIIGMMGAGKTRVGKEVAQMMRLPFADADVEIEREIGMSIPSYFEEY 56 (542)
T ss_pred CCCCCccEEEECCCCCCHHHHHHHHHHHhCCCEEEchHHHHHHHCcCHHHHHHHH
Confidence 34444 37799999999999999999999999999885311 1222356666543
No 310
>PLN02200 adenylate kinase family protein
Probab=97.27 E-value=0.0003 Score=67.13 Aligned_cols=30 Identities=20% Similarity=0.396 Sum_probs=26.2
Q ss_pred CceeEEeCCCCCcHHHHHHHHHHHcCCCeE
Q 035603 227 KRGYLLFGPPGTGKSTMIAAMANCLNYDVY 256 (431)
Q Consensus 227 ~rg~LL~GPPGtGKTsla~aiA~~l~~~i~ 256 (431)
+.-+++.||||||||++++.||..+|+..+
T Consensus 43 ~~ii~I~G~PGSGKsT~a~~La~~~g~~hi 72 (234)
T PLN02200 43 PFITFVLGGPGSGKGTQCEKIVETFGFKHL 72 (234)
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHhCCeEE
Confidence 456889999999999999999999987644
No 311
>TIGR01351 adk adenylate kinases. Adenylate kinase (EC 2.7.4.3) converts ATP + AMP to ADP + ADP, that is, uses ATP as a phosphate donor for AMP. Most members of this family are known or believed to be adenylate kinase. However, some members accept other nucleotide triphosphates as donors, may be unable to use ATP, and may fail to complement adenylate kinase mutants. An example of a nucleoside-triphosphate--adenylate kinase (EC 2.7.4.10) is a GTP:AMP phosphotransferase. This family is designated subfamily rather than equivalog for this reason.
Probab=97.25 E-value=0.00027 Score=66.16 Aligned_cols=115 Identities=18% Similarity=0.135 Sum_probs=59.0
Q ss_pred eEEeCCCCCcHHHHHHHHHHHcCCCeEEec-cc--CcCChHHHHHHHHHhhhc-cc-chhhHHHHHHHHhcCcccCCCCc
Q 035603 230 YLLFGPPGTGKSTMIAAMANCLNYDVYDLE-LT--SVENNNELRSLLVDISSK-KK-KSNVTLSGLLNCIGGLWSTCGGE 304 (431)
Q Consensus 230 ~LL~GPPGtGKTsla~aiA~~l~~~i~~l~-~~--~~~~~~~l~~l~~~~~~~-~~-~~~~~~s~lL~~ldg~~~~~~~~ 304 (431)
+++.||||+|||++++.||..+|+..+... +- .+.....+...+...... .. ........+.+.|.... ..+.+
T Consensus 2 I~i~G~pGsGKsT~a~~La~~~g~~~is~gdllr~~~~~~~~~~~~~~~~~~~g~~vp~~~~~~l~~~~i~~~~-~~~~~ 80 (210)
T TIGR01351 2 LVLLGPPGSGKGTQAKRIAEKYGLPHISTGDLLRAEIKAGTPLGKKAKEYMEKGELVPDEIVNQLVKERLTQNQ-DNENG 80 (210)
T ss_pred EEEECCCCCCHHHHHHHHHHHcCCCeeehhHHHHHhhccccHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCc-ccCCc
Confidence 789999999999999999999998776542 11 011111222222211111 11 12233344444554321 11222
Q ss_pred eEEEEecCCCCCCCh--hhhcc-C-ceeEEEEcCCCCHHHHHHHHHHh
Q 035603 305 RIIVFTTNHVDKLDP--ALIRR-G-RMDKHIEMPYCCFEAFKVLAKNY 348 (431)
Q Consensus 305 ~ivI~TTN~~~~Ld~--AllRp-G-Rfd~~I~~~~p~~~~r~~i~~~~ 348 (431)
.|+=+. |-..+. +|..- + ..|..|.+..|.......+....
T Consensus 81 ~ilDGf---Prt~~Qa~~l~~~~~~~~~~vi~L~~~~~~~~~Rl~~R~ 125 (210)
T TIGR01351 81 FILDGF---PRTLSQAEALDALLKEKIDAVIELDVPDEELVERLSGRR 125 (210)
T ss_pred EEEeCC---CCCHHHHHHHHHHhccCCCEEEEEECCHHHHHHHHHCCC
Confidence 444343 222221 11111 1 36788888888877666666554
No 312
>PF13191 AAA_16: AAA ATPase domain; PDB: 2V1U_A.
Probab=97.23 E-value=0.00018 Score=65.06 Aligned_cols=37 Identities=27% Similarity=0.472 Sum_probs=25.7
Q ss_pred CceeEEeCCCCCcHHHHHHHHHHHcCCC---eEEecccCc
Q 035603 227 KRGYLLFGPPGTGKSTMIAAMANCLNYD---VYDLELTSV 263 (431)
Q Consensus 227 ~rg~LL~GPPGtGKTsla~aiA~~l~~~---i~~l~~~~~ 263 (431)
++.++|+||||+|||++++++...+... ++.+++...
T Consensus 24 ~~~~ll~G~~G~GKT~ll~~~~~~~~~~~~~~~~~~~~~~ 63 (185)
T PF13191_consen 24 PRNLLLTGESGSGKTSLLRALLDRLAERGGYVISINCDDS 63 (185)
T ss_dssp ---EEE-B-TTSSHHHHHHHHHHHHHHHT--EEEEEEETT
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHhcCCEEEEEEEecc
Confidence 5789999999999999999988766444 666666655
No 313
>smart00072 GuKc Guanylate kinase homologues. Active enzymes catalyze ATP-dependent phosphorylation of GMP to GDP. Structure resembles that of adenylate kinase. So-called membrane-associated guanylate kinase homologues (MAGUKs) do not possess guanylate kinase activities; instead at least some possess protein-binding functions.
Probab=97.22 E-value=0.001 Score=60.85 Aligned_cols=25 Identities=36% Similarity=0.700 Sum_probs=22.9
Q ss_pred CceeEEeCCCCCcHHHHHHHHHHHc
Q 035603 227 KRGYLLFGPPGTGKSTMIAAMANCL 251 (431)
Q Consensus 227 ~rg~LL~GPPGtGKTsla~aiA~~l 251 (431)
+|-++|.||+|+||+++++.|..+.
T Consensus 2 ~r~ivl~Gpsg~GK~tl~~~L~~~~ 26 (184)
T smart00072 2 RRPIVLSGPSGVGKGTLLAELIQEI 26 (184)
T ss_pred CcEEEEECCCCCCHHHHHHHHHhcC
Confidence 4678999999999999999999986
No 314
>PRK14527 adenylate kinase; Provisional
Probab=97.21 E-value=0.00031 Score=64.67 Aligned_cols=31 Identities=29% Similarity=0.558 Sum_probs=27.0
Q ss_pred CceeEEeCCCCCcHHHHHHHHHHHcCCCeEE
Q 035603 227 KRGYLLFGPPGTGKSTMIAAMANCLNYDVYD 257 (431)
Q Consensus 227 ~rg~LL~GPPGtGKTsla~aiA~~l~~~i~~ 257 (431)
+.-+++.||||+|||++++.+|..+++..+.
T Consensus 6 ~~~i~i~G~pGsGKsT~a~~La~~~~~~~is 36 (191)
T PRK14527 6 NKVVIFLGPPGAGKGTQAERLAQELGLKKLS 36 (191)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHhCCCCCC
Confidence 4568999999999999999999999876554
No 315
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=97.18 E-value=0.0031 Score=69.21 Aligned_cols=136 Identities=21% Similarity=0.300 Sum_probs=88.0
Q ss_pred CccccccChhhHHHHHHHHHHHHhCHHHHHHhCCCCCceeEEeCCCCCcHHHHHHHHHHHc----------CCCeEEecc
Q 035603 191 TFDTLAMASKKKEAIKKDLIKFTEGKEYYAKIGKAWKRGYLLFGPPGTGKSTMIAAMANCL----------NYDVYDLEL 260 (431)
Q Consensus 191 ~f~~l~g~~~~k~~i~~~l~~~~~~~~~~~~~g~~~~rg~LL~GPPGtGKTsla~aiA~~l----------~~~i~~l~~ 260 (431)
.+|-|+|-++-.+.+++.+.... +..-+|.|+||+|||.++..+|... +..++.+|+
T Consensus 168 klDPvIGRd~EI~r~iqIL~RR~-------------KNNPvLiGEpGVGKTAIvEGLA~rIv~g~VP~~L~~~~i~sLD~ 234 (786)
T COG0542 168 KLDPVIGRDEEIRRTIQILSRRT-------------KNNPVLVGEPGVGKTAIVEGLAQRIVNGDVPESLKDKRIYSLDL 234 (786)
T ss_pred CCCCCcChHHHHHHHHHHHhccC-------------CCCCeEecCCCCCHHHHHHHHHHHHhcCCCCHHHcCCEEEEecH
Confidence 36777887666666655443222 3456899999999999999999753 567889998
Q ss_pred cCcCC--------hHHHHHHHHHhhhc----------------ccc-h-hhHHHHHHHHhcCcccCCCCceEEEEecCCC
Q 035603 261 TSVEN--------NNELRSLLVDISSK----------------KKK-S-NVTLSGLLNCIGGLWSTCGGERIIVFTTNHV 314 (431)
Q Consensus 261 ~~~~~--------~~~l~~l~~~~~~~----------------~~~-~-~~~~s~lL~~ldg~~~~~~~~~ivI~TTN~~ 314 (431)
+.+.. ++.++.++.+.... ... . ..-.+.+|.-.- +. ++.-.|++|+.-
T Consensus 235 g~LvAGakyRGeFEeRlk~vl~ev~~~~~vILFIDEiHtiVGAG~~~G~a~DAaNiLKPaL----AR-GeL~~IGATT~~ 309 (786)
T COG0542 235 GSLVAGAKYRGEFEERLKAVLKEVEKSKNVILFIDEIHTIVGAGATEGGAMDAANLLKPAL----AR-GELRCIGATTLD 309 (786)
T ss_pred HHHhccccccCcHHHHHHHHHHHHhcCCCeEEEEechhhhcCCCcccccccchhhhhHHHH----hc-CCeEEEEeccHH
Confidence 87622 35677777666544 111 0 122333333221 12 335566665522
Q ss_pred C-----CCChhhhccCceeEEEEcCCCCHHHHHHHHHH
Q 035603 315 D-----KLDPALIRRGRMDKHIEMPYCCFEAFKVLAKN 347 (431)
Q Consensus 315 ~-----~Ld~AllRpGRfd~~I~~~~p~~~~r~~i~~~ 347 (431)
+ .=|+||-| || ..|.+.-|+.++-..|++-
T Consensus 310 EYRk~iEKD~AL~R--RF-Q~V~V~EPs~e~ti~ILrG 344 (786)
T COG0542 310 EYRKYIEKDAALER--RF-QKVLVDEPSVEDTIAILRG 344 (786)
T ss_pred HHHHHhhhchHHHh--cC-ceeeCCCCCHHHHHHHHHH
Confidence 2 35999999 99 5799999999888777654
No 316
>PRK04182 cytidylate kinase; Provisional
Probab=97.18 E-value=0.00035 Score=63.03 Aligned_cols=30 Identities=30% Similarity=0.452 Sum_probs=27.4
Q ss_pred eeEEeCCCCCcHHHHHHHHHHHcCCCeEEe
Q 035603 229 GYLLFGPPGTGKSTMIAAMANCLNYDVYDL 258 (431)
Q Consensus 229 g~LL~GPPGtGKTsla~aiA~~l~~~i~~l 258 (431)
-++|.|+||||||++++.+|..+|+++++.
T Consensus 2 ~I~i~G~~GsGKstia~~la~~lg~~~id~ 31 (180)
T PRK04182 2 IITISGPPGSGKTTVARLLAEKLGLKHVSA 31 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcCCcEecH
Confidence 378999999999999999999999998874
No 317
>PRK09825 idnK D-gluconate kinase; Provisional
Probab=97.16 E-value=0.0049 Score=56.18 Aligned_cols=42 Identities=19% Similarity=0.406 Sum_probs=30.4
Q ss_pred ceeEEeCCCCCcHHHHHHHHHHHcCCCeEEecccCcCChHHHHH
Q 035603 228 RGYLLFGPPGTGKSTMIAAMANCLNYDVYDLELTSVENNNELRS 271 (431)
Q Consensus 228 rg~LL~GPPGtGKTsla~aiA~~l~~~i~~l~~~~~~~~~~l~~ 271 (431)
.-+.+.||+|+|||++++++++.++..+ ++...+.....+++
T Consensus 4 e~i~l~G~sGsGKSTl~~~la~~l~~~~--i~gd~~~~~~~~r~ 45 (176)
T PRK09825 4 ESYILMGVSGSGKSLIGSKIAALFSAKF--IDGDDLHPAKNIDK 45 (176)
T ss_pred cEEEEECCCCCCHHHHHHHHHHhcCCEE--ECCcccCCHhHHHH
Confidence 3578999999999999999999998743 44444433333433
No 318
>cd02019 NK Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates to nucleosides/nucleotides, nucleoside monophosphates, or sugars. Members of this family play a wide variety of essential roles in nucleotide metabolism, the biosynthesis of coenzymes and aromatic compounds, as well as the metabolism of sugar and sulfate.
Probab=97.16 E-value=0.00058 Score=52.22 Aligned_cols=22 Identities=36% Similarity=0.522 Sum_probs=20.4
Q ss_pred eEEeCCCCCcHHHHHHHHHHHc
Q 035603 230 YLLFGPPGTGKSTMIAAMANCL 251 (431)
Q Consensus 230 ~LL~GPPGtGKTsla~aiA~~l 251 (431)
+.+.|+||+|||+++++++..+
T Consensus 2 i~i~G~~gsGKst~~~~l~~~l 23 (69)
T cd02019 2 IAITGGSGSGKSTVAKKLAEQL 23 (69)
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 5688999999999999999996
No 319
>COG2204 AtoC Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains [Signal transduction mechanisms]
Probab=97.16 E-value=0.0049 Score=64.12 Aligned_cols=75 Identities=17% Similarity=0.190 Sum_probs=56.2
Q ss_pred CccccccChhhHHHHHHHHHHHHhCHHHHHHhCCCCCceeEEeCCCCCcHHHHHHHHHHHcC---CCeEEecccCcCChH
Q 035603 191 TFDTLAMASKKKEAIKKDLIKFTEGKEYYAKIGKAWKRGYLLFGPPGTGKSTMIAAMANCLN---YDVYDLELTSVENNN 267 (431)
Q Consensus 191 ~f~~l~g~~~~k~~i~~~l~~~~~~~~~~~~~g~~~~rg~LL~GPPGtGKTsla~aiA~~l~---~~i~~l~~~~~~~~~ 267 (431)
.+..++|.....+++.+.+...-.. ...+|++|++||||..+|++|-.... -||+.+||..+-.+
T Consensus 139 ~~~~liG~S~am~~l~~~i~kvA~s-----------~a~VLI~GESGtGKElvAr~IH~~S~R~~~PFVavNcaAip~~- 206 (464)
T COG2204 139 LGGELVGESPAMQQLRRLIAKVAPS-----------DASVLITGESGTGKELVARAIHQASPRAKGPFIAVNCAAIPEN- 206 (464)
T ss_pred ccCCceecCHHHHHHHHHHHHHhCC-----------CCCEEEECCCCCcHHHHHHHHHhhCcccCCCceeeecccCCHH-
Confidence 4567889888888888776555443 45799999999999999999988765 49999999998432
Q ss_pred HH-HHHHHHhh
Q 035603 268 EL-RSLLVDIS 277 (431)
Q Consensus 268 ~l-~~l~~~~~ 277 (431)
-+ .++|....
T Consensus 207 l~ESELFGhek 217 (464)
T COG2204 207 LLESELFGHEK 217 (464)
T ss_pred HHHHHhhcccc
Confidence 23 33555333
No 320
>PLN02459 probable adenylate kinase
Probab=97.15 E-value=0.0009 Score=64.63 Aligned_cols=113 Identities=14% Similarity=0.153 Sum_probs=61.5
Q ss_pred eeEEeCCCCCcHHHHHHHHHHHcCCCeEEecccCc-----CChHHHHHHHHHhhhcc--cchhhHHHHHHHHhcCcccCC
Q 035603 229 GYLLFGPPGTGKSTMIAAMANCLNYDVYDLELTSV-----ENNNELRSLLVDISSKK--KKSNVTLSGLLNCIGGLWSTC 301 (431)
Q Consensus 229 g~LL~GPPGtGKTsla~aiA~~l~~~i~~l~~~~~-----~~~~~l~~l~~~~~~~~--~~~~~~~s~lL~~ldg~~~~~ 301 (431)
-++|.||||+|||++++.+|..+|+..+.. .++ .....+...+.....+. -....+..-+.+.|......+
T Consensus 31 ~ii~~G~PGsGK~T~a~~la~~~~~~~is~--gdllR~ei~~~t~lg~~i~~~~~~G~lVPdeiv~~ll~~~l~~~~~~~ 108 (261)
T PLN02459 31 NWVFLGCPGVGKGTYASRLSKLLGVPHIAT--GDLVREEIKSSGPLGAQLKEIVNQGKLVPDEIIFSLLSKRLEAGEEEG 108 (261)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCcEEeC--cHHHHHHHhccchhHHHHHHHHHcCCccCHHHHHHHHHHHHhcccccC
Confidence 478899999999999999999998765543 222 12222322222222221 123344555555665432111
Q ss_pred CCceEEE-E---ecCCCCCCChhhhccCceeEEEEcCCCCHHHHHHHHHHh
Q 035603 302 GGERIIV-F---TTNHVDKLDPALIRRGRMDKHIEMPYCCFEAFKVLAKNY 348 (431)
Q Consensus 302 ~~~~ivI-~---TTN~~~~Ld~AllRpGRfd~~I~~~~p~~~~r~~i~~~~ 348 (431)
. ..+|+ + |.+..+.|+.. ..+|..|++..|+......+....
T Consensus 109 ~-~g~iLDGFPRt~~Qa~~Le~~----~~id~Vi~L~v~d~~l~~Rl~gR~ 154 (261)
T PLN02459 109 E-SGFILDGFPRTVRQAEILEGV----TDIDLVVNLKLREEVLVEKCLGRR 154 (261)
T ss_pred C-ceEEEeCCCCCHHHHHHHHhc----CCCCEEEEEECCHHHHHHHhhccc
Confidence 2 22333 2 22222333321 247889999988776666665443
No 321
>PRK01184 hypothetical protein; Provisional
Probab=97.15 E-value=0.00038 Score=63.47 Aligned_cols=29 Identities=24% Similarity=0.322 Sum_probs=25.4
Q ss_pred eeEEeCCCCCcHHHHHHHHHHHcCCCeEEe
Q 035603 229 GYLLFGPPGTGKSTMIAAMANCLNYDVYDL 258 (431)
Q Consensus 229 g~LL~GPPGtGKTsla~aiA~~l~~~i~~l 258 (431)
-++|.||||+||||+++ ++.++|++++..
T Consensus 3 ~i~l~G~~GsGKsT~a~-~~~~~g~~~i~~ 31 (184)
T PRK01184 3 IIGVVGMPGSGKGEFSK-IAREMGIPVVVM 31 (184)
T ss_pred EEEEECCCCCCHHHHHH-HHHHcCCcEEEh
Confidence 47899999999999987 899999888765
No 322
>COG1855 ATPase (PilT family) [General function prediction only]
Probab=97.14 E-value=0.00054 Score=69.82 Aligned_cols=56 Identities=27% Similarity=0.522 Sum_probs=44.8
Q ss_pred CcceeeeccCC--CCccccccChhhHHHHHHHHHHHHhCHHHHHHhCCCCCceeEEeCCCCCcHHHHHHHHHHHcC
Q 035603 179 KKWSHVYFEHP--ATFDTLAMASKKKEAIKKDLIKFTEGKEYYAKIGKAWKRGYLLFGPPGTGKSTMIAAMANCLN 252 (431)
Q Consensus 179 ~~w~~~~~~~p--~~f~~l~g~~~~k~~i~~~l~~~~~~~~~~~~~g~~~~rg~LL~GPPGtGKTsla~aiA~~l~ 252 (431)
..|+-...++- .++++-.+++.+++.|.+. .+|+|+-||||.|||++|+|+|..+.
T Consensus 231 d~~EITavRPvvk~~ledY~L~dkl~eRL~er------------------aeGILIAG~PGaGKsTFaqAlAefy~ 288 (604)
T COG1855 231 DRWEITAVRPVVKLSLEDYGLSDKLKERLEER------------------AEGILIAGAPGAGKSTFAQALAEFYA 288 (604)
T ss_pred CceEEEEEeeeEEechhhcCCCHHHHHHHHhh------------------hcceEEecCCCCChhHHHHHHHHHHH
Confidence 45665544443 5789999999999888652 36999999999999999999998764
No 323
>PF00406 ADK: Adenylate kinase; InterPro: IPR000850 Adenylate kinases (ADK) are phosphotransferases that catalyse the reversible reaction AMP + MgATP = ADP + MgADP an essential reaction for many processes in living cells. Two ADK isozymes have been identified in mammalian cells. These specifically bind AMP and favour binding to ATP over other nucleotide triphosphates (AK1 is cytosolic and AK2 is located in the mitochondria). A third ADK has been identified in bovine heart and human cells [], this is a mitochondrial GTP:AMP phosphotransferase, also specific for the phosphorylation of AMP, but can only use GTP or ITP as a substrate []. ADK has also been identified in different bacterial species and in yeast []. Two further enzymes are known to be related to the ADK family, i.e. yeast uridine monophosphokinase and slime mold UMP-CMP kinase. Within the ADK family there are several conserved regions, including the ATP-binding domains. One of the most conserved areas includes an Arg residue, whose modification inactivates the enzyme, together with an Asp that resides in the catalytic cleft of the enzyme and participates in a salt bridge.; GO: 0005524 ATP binding, 0019205 nucleobase-containing compound kinase activity, 0006139 nucleobase-containing compound metabolic process; PDB: 1ZD8_A 3TLX_D 1TEV_A 1ZAK_B 3CM0_A 3ADK_A 1ZIP_A 1ZIO_A 1ZIN_A 3NDP_A ....
Probab=97.12 E-value=0.0003 Score=62.15 Aligned_cols=26 Identities=31% Similarity=0.561 Sum_probs=22.8
Q ss_pred EeCCCCCcHHHHHHHHHHHcCCCeEE
Q 035603 232 LFGPPGTGKSTMIAAMANCLNYDVYD 257 (431)
Q Consensus 232 L~GPPGtGKTsla~aiA~~l~~~i~~ 257 (431)
+.||||+|||++++.||..+|+..+.
T Consensus 1 i~G~PgsGK~t~~~~la~~~~~~~is 26 (151)
T PF00406_consen 1 ILGPPGSGKGTQAKRLAKRYGLVHIS 26 (151)
T ss_dssp EEESTTSSHHHHHHHHHHHHTSEEEE
T ss_pred CcCCCCCChHHHHHHHHHhcCcceec
Confidence 57999999999999999999875554
No 324
>PF13238 AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB_A 3IIM_A 2AXP_A 3KB2_A 1KHT_A 1NKS_A 3H86_C ....
Probab=97.10 E-value=0.00034 Score=59.14 Aligned_cols=22 Identities=36% Similarity=0.570 Sum_probs=20.9
Q ss_pred eEEeCCCCCcHHHHHHHHHHHc
Q 035603 230 YLLFGPPGTGKSTMIAAMANCL 251 (431)
Q Consensus 230 ~LL~GPPGtGKTsla~aiA~~l 251 (431)
|+|.|+|||||||+++.|+..+
T Consensus 1 I~i~G~~GsGKtTia~~L~~~~ 22 (129)
T PF13238_consen 1 IGISGIPGSGKTTIAKELAERL 22 (129)
T ss_dssp EEEEESTTSSHHHHHHHHHHHH
T ss_pred CEEECCCCCCHHHHHHHHHHHH
Confidence 6899999999999999999998
No 325
>TIGR02173 cyt_kin_arch cytidylate kinase, putative. Proteins in this family are believed to be cytidylate kinase. Members of this family are found in the archaea and in spirochaetes, and differ considerably from the common bacterial form of cytidylate kinase described by TIGR00017.
Probab=97.08 E-value=0.00051 Score=61.48 Aligned_cols=29 Identities=31% Similarity=0.580 Sum_probs=26.8
Q ss_pred eEEeCCCCCcHHHHHHHHHHHcCCCeEEe
Q 035603 230 YLLFGPPGTGKSTMIAAMANCLNYDVYDL 258 (431)
Q Consensus 230 ~LL~GPPGtGKTsla~aiA~~l~~~i~~l 258 (431)
+.++|+||+|||++++.+|..+|++++..
T Consensus 3 I~i~G~~GSGKstia~~la~~lg~~~~~~ 31 (171)
T TIGR02173 3 ITISGPPGSGKTTVAKILAEKLSLKLISA 31 (171)
T ss_pred EEEECCCCCCHHHHHHHHHHHcCCceecH
Confidence 68999999999999999999999998764
No 326
>PRK14526 adenylate kinase; Provisional
Probab=97.06 E-value=0.00055 Score=64.29 Aligned_cols=28 Identities=39% Similarity=0.764 Sum_probs=25.3
Q ss_pred eEEeCCCCCcHHHHHHHHHHHcCCCeEE
Q 035603 230 YLLFGPPGTGKSTMIAAMANCLNYDVYD 257 (431)
Q Consensus 230 ~LL~GPPGtGKTsla~aiA~~l~~~i~~ 257 (431)
++|.||||+|||++++.||..+++..+.
T Consensus 3 i~l~G~pGsGKsT~a~~La~~~~~~~is 30 (211)
T PRK14526 3 LVFLGPPGSGKGTIAKILSNELNYYHIS 30 (211)
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCceee
Confidence 7899999999999999999999876654
No 327
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=97.05 E-value=0.0018 Score=65.90 Aligned_cols=25 Identities=36% Similarity=0.545 Sum_probs=22.1
Q ss_pred CceeEEeCCCCCcHHHHHHHHHHHc
Q 035603 227 KRGYLLFGPPGTGKSTMIAAMANCL 251 (431)
Q Consensus 227 ~rg~LL~GPPGtGKTsla~aiA~~l 251 (431)
+..++|.||+|+|||+++..||..+
T Consensus 137 g~ii~lvGptGvGKTTtiakLA~~~ 161 (374)
T PRK14722 137 GGVFALMGPTGVGKTTTTAKLAARC 161 (374)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHH
Confidence 4578999999999999999999763
No 328
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=97.05 E-value=0.00063 Score=59.58 Aligned_cols=32 Identities=31% Similarity=0.581 Sum_probs=25.7
Q ss_pred eEEeCCCCCcHHHHHHHHHHHc---CCCeEEeccc
Q 035603 230 YLLFGPPGTGKSTMIAAMANCL---NYDVYDLELT 261 (431)
Q Consensus 230 ~LL~GPPGtGKTsla~aiA~~l---~~~i~~l~~~ 261 (431)
++++||||+|||+++..++..+ +.+++.++..
T Consensus 2 ~~i~G~~G~GKT~l~~~i~~~~~~~~~~v~~~~~e 36 (165)
T cd01120 2 ILVFGPTGSGKTTLALQLALNIATKGGKVVYVDIE 36 (165)
T ss_pred eeEeCCCCCCHHHHHHHHHHHHHhcCCEEEEEECC
Confidence 6899999999999999999877 4555555543
No 329
>KOG2227 consensus Pre-initiation complex, subunit CDC6, AAA+ superfamily ATPase [Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=97.05 E-value=0.0067 Score=62.39 Aligned_cols=151 Identities=17% Similarity=0.164 Sum_probs=93.3
Q ss_pred cccccChhhHHHHHHHHHHHHhCHHHHHHhCCCCCceeEEeCCCCCcHHHHHHHHHHHcC-----CCeEEecccCcCChH
Q 035603 193 DTLAMASKKKEAIKKDLIKFTEGKEYYAKIGKAWKRGYLLFGPPGTGKSTMIAAMANCLN-----YDVYDLELTSVENNN 267 (431)
Q Consensus 193 ~~l~g~~~~k~~i~~~l~~~~~~~~~~~~~g~~~~rg~LL~GPPGtGKTsla~aiA~~l~-----~~i~~l~~~~~~~~~ 267 (431)
+++.|-+.-...+.+++...+.. .-+.++.+.|-||||||-+..-+-..+. ...+.+++.++....
T Consensus 150 ~~l~gRe~e~~~v~~F~~~hle~---------~t~gSlYVsG~PGtgkt~~l~rvl~~~~~~~~~~~~v~inc~sl~~~~ 220 (529)
T KOG2227|consen 150 GTLKGRELEMDIVREFFSLHLEL---------NTSGSLYVSGQPGTGKTALLSRVLDSLSKSSKSPVTVYINCTSLTEAS 220 (529)
T ss_pred CCccchHHHHHHHHHHHHhhhhc---------ccCcceEeeCCCCcchHHHHHHHHHhhhhhcccceeEEEeeccccchH
Confidence 55667666666665555544442 2356788999999999998875544332 245778888875443
Q ss_pred -HHHHHHHHhhhc---cc--------------chhhHHHHHHHHhcCc--------------ccCCCCceEEEEecCCCC
Q 035603 268 -ELRSLLVDISSK---KK--------------KSNVTLSGLLNCIGGL--------------WSTCGGERIIVFTTNHVD 315 (431)
Q Consensus 268 -~l~~l~~~~~~~---~~--------------~~~~~~s~lL~~ldg~--------------~~~~~~~~ivI~TTN~~~ 315 (431)
-..+++...... .+ .....+--.|++||-+ ...++..+++|+.+|..|
T Consensus 221 aiF~kI~~~~~q~~~s~~~~~~~~~~~~~h~~q~k~~~llVlDEmD~L~tr~~~vLy~lFewp~lp~sr~iLiGiANslD 300 (529)
T KOG2227|consen 221 AIFKKIFSSLLQDLVSPGTGMQHLEKFEKHTKQSKFMLLLVLDEMDHLITRSQTVLYTLFEWPKLPNSRIILIGIANSLD 300 (529)
T ss_pred HHHHHHHHHHHHHhcCCchhHHHHHHHHHHHhcccceEEEEechhhHHhhcccceeeeehhcccCCcceeeeeeehhhhh
Confidence 234444433111 00 0011111234444443 223445678999999998
Q ss_pred CCChhhhc----cCceeEEEEcCCCCHHHHHHHHHHhhchh
Q 035603 316 KLDPALIR----RGRMDKHIEMPYCCFEAFKVLAKNYLEIE 352 (431)
Q Consensus 316 ~Ld~AllR----pGRfd~~I~~~~p~~~~r~~i~~~~l~~~ 352 (431)
.-|..|.| .+.-...+.|++.+.++...|++.-+...
T Consensus 301 lTdR~LprL~~~~~~~P~~l~F~PYTk~qI~~Il~~rl~~~ 341 (529)
T KOG2227|consen 301 LTDRFLPRLNLDLTIKPKLLVFPPYTKDQIVEILQQRLSEE 341 (529)
T ss_pred HHHHHhhhhhhccCCCCceeeecCCCHHHHHHHHHHHHhcc
Confidence 87766653 34455678999999999999998887543
No 330
>cd02024 NRK1 Nicotinamide riboside kinase (NRK) is an enzyme involved in the metabolism of nicotinamide adenine dinucleotide (NAD+). This enzyme catalyzes the phosphorylation of nicotinamide riboside (NR) to form nicotinamide mononucleotide (NMN). It defines the NR salvage pathway of NAD+ biosynthesis in addition to the pathways through nicotinic acid mononucleotide (NaMN). This enzyme can also phosphorylate the anticancer drug tiazofurin, which is an analog of nicotinamide riboside.
Probab=97.04 E-value=0.0018 Score=59.73 Aligned_cols=30 Identities=23% Similarity=0.286 Sum_probs=24.2
Q ss_pred eEEeCCCCCcHHHHHHHHHHHc-CCCeEEec
Q 035603 230 YLLFGPPGTGKSTMIAAMANCL-NYDVYDLE 259 (431)
Q Consensus 230 ~LL~GPPGtGKTsla~aiA~~l-~~~i~~l~ 259 (431)
+.+.|+||||||++|+.|+..+ +..++.+|
T Consensus 2 i~i~G~sgsGKTtla~~l~~~~~~~~~i~~D 32 (187)
T cd02024 2 VGISGVTNSGKTTLAKLLQRILPNCCVIHQD 32 (187)
T ss_pred EEEECCCCCCHHHHHHHHHHHcCCCeEEccc
Confidence 5678999999999999999998 45554443
No 331
>PHA02530 pseT polynucleotide kinase; Provisional
Probab=97.03 E-value=0.00057 Score=67.30 Aligned_cols=30 Identities=30% Similarity=0.284 Sum_probs=25.2
Q ss_pred ceeEEeCCCCCcHHHHHHHHHHHc-CCCeEE
Q 035603 228 RGYLLFGPPGTGKSTMIAAMANCL-NYDVYD 257 (431)
Q Consensus 228 rg~LL~GPPGtGKTsla~aiA~~l-~~~i~~ 257 (431)
.-++|.|||||||||+|+.|+..+ +..+++
T Consensus 3 ~liil~G~pGSGKSTla~~L~~~~~~~~~l~ 33 (300)
T PHA02530 3 KIILTVGVPGSGKSTWAREFAAKNPKAVNVN 33 (300)
T ss_pred EEEEEEcCCCCCHHHHHHHHHHHCCCCEEEe
Confidence 458899999999999999999998 554443
No 332
>cd02025 PanK Pantothenate kinase (PanK) catalyzes the phosphorylation of pantothenic acid to form 4'-phosphopantothenic, which is the first of five steps in coenzyme A (CoA) biosynthetic pathway. The reaction carried out by this enzyme is a key regulatory point in CoA biosynthesis.
Probab=97.03 E-value=0.008 Score=56.82 Aligned_cols=34 Identities=21% Similarity=0.170 Sum_probs=25.6
Q ss_pred eEEeCCCCCcHHHHHHHHHHHcC-----CCeEEecccCc
Q 035603 230 YLLFGPPGTGKSTMIAAMANCLN-----YDVYDLELTSV 263 (431)
Q Consensus 230 ~LL~GPPGtGKTsla~aiA~~l~-----~~i~~l~~~~~ 263 (431)
+-+.||+|+||||+++.|++.+. ..+..+...+.
T Consensus 2 igI~G~sGSGKTTla~~L~~~l~~~~~~~~v~vi~~D~f 40 (220)
T cd02025 2 IGIAGSVAVGKSTTARVLQALLSRWPDHPNVELITTDGF 40 (220)
T ss_pred EEeeCCCCCCHHHHHHHHHHHHhhcCCCCcEEEEecCcc
Confidence 45789999999999999999884 34555554444
No 333
>PRK09361 radB DNA repair and recombination protein RadB; Provisional
Probab=97.00 E-value=0.0016 Score=61.36 Aligned_cols=50 Identities=18% Similarity=0.328 Sum_probs=36.8
Q ss_pred CCCCCceeEEeCCCCCcHHHHHHHHHHHc---CCCeEEecccCcCChHHHHHHH
Q 035603 223 GKAWKRGYLLFGPPGTGKSTMIAAMANCL---NYDVYDLELTSVENNNELRSLL 273 (431)
Q Consensus 223 g~~~~rg~LL~GPPGtGKTsla~aiA~~l---~~~i~~l~~~~~~~~~~l~~l~ 273 (431)
|++...-++++||||+|||+++..+|.+. +..++.++... .....+.++.
T Consensus 19 Gi~~g~i~~i~G~~GsGKT~l~~~la~~~~~~~~~v~yi~~e~-~~~~r~~~~~ 71 (225)
T PRK09361 19 GFERGTITQIYGPPGSGKTNICLQLAVEAAKNGKKVIYIDTEG-LSPERFKQIA 71 (225)
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEECCC-CCHHHHHHHH
Confidence 67777889999999999999999998743 66777777662 2334444443
No 334
>TIGR00150 HI0065_YjeE ATPase, YjeE family. Members of this family have a conserved nucleotide-binding motif GXXGXGKT and a nucleotide-binding fold. Member protein YjeE of Haemophilus influenzae (HI0065) was shown to have ATPase activity.
Probab=96.99 E-value=0.00086 Score=58.26 Aligned_cols=29 Identities=28% Similarity=0.441 Sum_probs=25.7
Q ss_pred CCceeEEeCCCCCcHHHHHHHHHHHcCCC
Q 035603 226 WKRGYLLFGPPGTGKSTMIAAMANCLNYD 254 (431)
Q Consensus 226 ~~rg~LL~GPPGtGKTsla~aiA~~l~~~ 254 (431)
.+.-++|.|+.|+|||++++++++.++..
T Consensus 21 ~~~~i~l~G~lGaGKTtl~~~l~~~lg~~ 49 (133)
T TIGR00150 21 FGTVVLLKGDLGAGKTTLVQGLLQGLGIQ 49 (133)
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHHcCCC
Confidence 34568899999999999999999999865
No 335
>PF13521 AAA_28: AAA domain; PDB: 1LW7_A.
Probab=96.99 E-value=0.00055 Score=61.21 Aligned_cols=26 Identities=42% Similarity=0.676 Sum_probs=20.8
Q ss_pred eEEeCCCCCcHHHHHHHHHHHcCCCeE
Q 035603 230 YLLFGPPGTGKSTMIAAMANCLNYDVY 256 (431)
Q Consensus 230 ~LL~GPPGtGKTsla~aiA~~l~~~i~ 256 (431)
|.|.|+||||||||+++||.. |++++
T Consensus 2 I~i~G~~stGKTTL~~~L~~~-g~~~v 27 (163)
T PF13521_consen 2 IVITGGPSTGKTTLIEALAAR-GYPVV 27 (163)
T ss_dssp EEEE--TTSHHHHHHHHHHHH-T-EEE
T ss_pred EEEECCCCCCHHHHHHHHHHc-CCeEE
Confidence 689999999999999999998 77755
No 336
>PRK06696 uridine kinase; Validated
Probab=96.99 E-value=0.002 Score=60.93 Aligned_cols=38 Identities=16% Similarity=0.191 Sum_probs=31.0
Q ss_pred CceeEEeCCCCCcHHHHHHHHHHHc---CCCeEEecccCcC
Q 035603 227 KRGYLLFGPPGTGKSTMIAAMANCL---NYDVYDLELTSVE 264 (431)
Q Consensus 227 ~rg~LL~GPPGtGKTsla~aiA~~l---~~~i~~l~~~~~~ 264 (431)
+.-+.+.|+||+||||+|+.||..+ |.+++.+.+.+..
T Consensus 22 ~~iI~I~G~sgsGKSTlA~~L~~~l~~~g~~v~~~~~Ddf~ 62 (223)
T PRK06696 22 PLRVAIDGITASGKTTFADELAEEIKKRGRPVIRASIDDFH 62 (223)
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEecccccc
Confidence 4567789999999999999999998 6777776655553
No 337
>cd01394 radB RadB. The archaeal protein radB shares similarity radA, the archaeal functional homologue to the bacterial RecA. The precise function of radB is unclear.
Probab=96.98 E-value=0.0015 Score=61.21 Aligned_cols=39 Identities=26% Similarity=0.390 Sum_probs=31.5
Q ss_pred CCCCCceeEEeCCCCCcHHHHHHHHHHHc---CCCeEEeccc
Q 035603 223 GKAWKRGYLLFGPPGTGKSTMIAAMANCL---NYDVYDLELT 261 (431)
Q Consensus 223 g~~~~rg~LL~GPPGtGKTsla~aiA~~l---~~~i~~l~~~ 261 (431)
|++.++-++++||||||||+++..+|.+. +.+++.++..
T Consensus 15 Gi~~g~i~~i~G~~GsGKT~l~~~~a~~~~~~g~~v~yi~~e 56 (218)
T cd01394 15 GVERGTVTQVYGPPGTGKTNIAIQLAVETAGQGKKVAYIDTE 56 (218)
T ss_pred CccCCeEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEECC
Confidence 67777789999999999999999998764 4566666643
No 338
>cd02027 APSK Adenosine 5'-phosphosulfate kinase (APSK) catalyzes the phosphorylation of adenosine 5'-phosphosulfate to form 3'-phosphoadenosine 5'-phosphosulfate (PAPS). The end-product PAPS is a biologically "activated" sulfate form important for the assimilation of inorganic sulfate.
Probab=96.98 E-value=0.00084 Score=59.41 Aligned_cols=30 Identities=40% Similarity=0.545 Sum_probs=25.6
Q ss_pred eEEeCCCCCcHHHHHHHHHHHc---CCCeEEec
Q 035603 230 YLLFGPPGTGKSTMIAAMANCL---NYDVYDLE 259 (431)
Q Consensus 230 ~LL~GPPGtGKTsla~aiA~~l---~~~i~~l~ 259 (431)
+++.|+||+|||++++.++..+ +.+.+.++
T Consensus 2 i~i~G~~GsGKSTla~~L~~~l~~~g~~~~~i~ 34 (149)
T cd02027 2 IWLTGLSGSGKSTIARALEEKLFQRGRPVYVLD 34 (149)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEEc
Confidence 6899999999999999999998 66665554
No 339
>PF13086 AAA_11: AAA domain; PDB: 2XZL_A 2XZO_A 2WJY_A 2WJV_A 2XZP_A 2GK6_A 2GK7_A 2GJK_A.
Probab=96.98 E-value=0.00051 Score=64.02 Aligned_cols=22 Identities=50% Similarity=0.844 Sum_probs=17.8
Q ss_pred eEEeCCCCCcHHHHHHHHHHHc
Q 035603 230 YLLFGPPGTGKSTMIAAMANCL 251 (431)
Q Consensus 230 ~LL~GPPGtGKTsla~aiA~~l 251 (431)
.++.||||||||+++.+++..+
T Consensus 20 ~~i~GpPGTGKT~~l~~~i~~~ 41 (236)
T PF13086_consen 20 TLIQGPPGTGKTTTLASIIAQL 41 (236)
T ss_dssp EEEE-STTSSHHHHHHHHHHHH
T ss_pred EEEECCCCCChHHHHHHHHHHh
Confidence 7899999999998777777665
No 340
>PRK10078 ribose 1,5-bisphosphokinase; Provisional
Probab=96.95 E-value=0.00068 Score=62.15 Aligned_cols=31 Identities=26% Similarity=0.460 Sum_probs=26.4
Q ss_pred ceeEEeCCCCCcHHHHHHHHHHHcCCCeEEe
Q 035603 228 RGYLLFGPPGTGKSTMIAAMANCLNYDVYDL 258 (431)
Q Consensus 228 rg~LL~GPPGtGKTsla~aiA~~l~~~i~~l 258 (431)
.-+.|.||+|+||||+++.||..++.+++..
T Consensus 3 ~~i~l~G~sGsGKsTl~~~l~~~~~~~~~~~ 33 (186)
T PRK10078 3 KLIWLMGPSGSGKDSLLAALRQREQTQLLVA 33 (186)
T ss_pred cEEEEECCCCCCHHHHHHHHhccCCCeEEEc
Confidence 3578999999999999999999988766543
No 341
>PRK04220 2-phosphoglycerate kinase; Provisional
Probab=96.94 E-value=0.035 Score=54.80 Aligned_cols=29 Identities=28% Similarity=0.244 Sum_probs=26.5
Q ss_pred CCceeEEeCCCCCcHHHHHHHHHHHcCCC
Q 035603 226 WKRGYLLFGPPGTGKSTMIAAMANCLNYD 254 (431)
Q Consensus 226 ~~rg~LL~GPPGtGKTsla~aiA~~l~~~ 254 (431)
.|--+++.||+|||||++|..+|..+|.+
T Consensus 91 ~p~iIlI~G~sgsGKStlA~~La~~l~~~ 119 (301)
T PRK04220 91 EPIIILIGGASGVGTSTIAFELASRLGIR 119 (301)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHhCCC
Confidence 45678999999999999999999999987
No 342
>cd01393 recA_like RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange. While prokaryotes have a single RecA protein, eukaryotes have multiple RecA homologs such as Rad51, DMC1 and Rad55/57. Archaea have the RecA-like homologs radA and radB.
Probab=96.93 E-value=0.0042 Score=58.37 Aligned_cols=52 Identities=23% Similarity=0.210 Sum_probs=37.1
Q ss_pred CCCCCceeEEeCCCCCcHHHHHHHHHHHc---C------CCeEEecccCcCChHHHHHHHH
Q 035603 223 GKAWKRGYLLFGPPGTGKSTMIAAMANCL---N------YDVYDLELTSVENNNELRSLLV 274 (431)
Q Consensus 223 g~~~~rg~LL~GPPGtGKTsla~aiA~~l---~------~~i~~l~~~~~~~~~~l~~l~~ 274 (431)
|++...-+.++||||+|||+++..+|... + ..++.++.........+.++..
T Consensus 15 G~~~g~v~~I~G~~GsGKT~l~~~ia~~~~~~~~~~g~~~~v~yi~~e~~~~~~rl~~~~~ 75 (226)
T cd01393 15 GIPTGRITEIFGEFGSGKTQLCLQLAVEAQLPGELGGLEGKVVYIDTEGAFRPERLVQLAV 75 (226)
T ss_pred CCcCCcEEEEeCCCCCChhHHHHHHHHHhhcccccCCCcceEEEEecCCCCCHHHHHHHHH
Confidence 67878889999999999999999988653 2 4556666654333445555543
No 343
>KOG3354 consensus Gluconate kinase [Carbohydrate transport and metabolism]
Probab=96.93 E-value=0.0014 Score=57.91 Aligned_cols=49 Identities=20% Similarity=0.305 Sum_probs=38.1
Q ss_pred CCCceeEEeCCCCCcHHHHHHHHHHHcCCCeEEecccCcCChHHHHHHHHH
Q 035603 225 AWKRGYLLFGPPGTGKSTMIAAMANCLNYDVYDLELTSVENNNELRSLLVD 275 (431)
Q Consensus 225 ~~~rg~LL~GPPGtGKTsla~aiA~~l~~~i~~l~~~~~~~~~~l~~l~~~ 275 (431)
|.+-.+++-|+.|||||+++++++.+|+++|++ ..++...+++.++-..
T Consensus 10 ~~k~~i~vmGvsGsGKSTigk~L~~~l~~~F~d--gDd~Hp~~NveKM~~G 58 (191)
T KOG3354|consen 10 PFKYVIVVMGVSGSGKSTIGKALSEELGLKFID--GDDLHPPANVEKMTQG 58 (191)
T ss_pred CCceeEEEEecCCCChhhHHHHHHHHhCCcccc--cccCCCHHHHHHHhcC
Confidence 445567889999999999999999999999885 4455566666665433
No 344
>TIGR03574 selen_PSTK L-seryl-tRNA(Sec) kinase, archaeal. Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents archaeal proteins with this activity.
Probab=96.92 E-value=0.00088 Score=64.34 Aligned_cols=30 Identities=47% Similarity=0.594 Sum_probs=25.2
Q ss_pred eEEeCCCCCcHHHHHHHHHHHc---CCCeEEec
Q 035603 230 YLLFGPPGTGKSTMIAAMANCL---NYDVYDLE 259 (431)
Q Consensus 230 ~LL~GPPGtGKTsla~aiA~~l---~~~i~~l~ 259 (431)
++|.|+||+|||++|+++|..+ +.+++.++
T Consensus 2 Ivl~G~pGSGKST~a~~La~~l~~~~~~v~~i~ 34 (249)
T TIGR03574 2 IILTGLPGVGKSTFSKELAKKLSEKNIDVIILG 34 (249)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHHcCCceEEEc
Confidence 6899999999999999999987 45665554
No 345
>PF01583 APS_kinase: Adenylylsulphate kinase; InterPro: IPR002891 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases. Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. This domain contains an ATP binding P-loop motif [].; GO: 0005524 ATP binding, 0016301 kinase activity, 0016772 transferase activity, transferring phosphorus-containing groups, 0000103 sulfate assimilation; PDB: 1M7H_B 1M7G_B 3CR7_B 1D6J_A 2OFW_G 1X6V_B 1XNJ_A 1XJQ_B 2PEY_A 2PEZ_B ....
Probab=96.88 E-value=0.00092 Score=59.67 Aligned_cols=36 Identities=31% Similarity=0.386 Sum_probs=29.3
Q ss_pred ceeEEeCCCCCcHHHHHHHHHHHc---CCCeEEecccCc
Q 035603 228 RGYLLFGPPGTGKSTMIAAMANCL---NYDVYDLELTSV 263 (431)
Q Consensus 228 rg~LL~GPPGtGKTsla~aiA~~l---~~~i~~l~~~~~ 263 (431)
.-+.|.|.||+|||+||+++...| |.+++.++...+
T Consensus 3 ~vIwltGlsGsGKtTlA~~L~~~L~~~g~~~~~LDgD~l 41 (156)
T PF01583_consen 3 FVIWLTGLSGSGKTTLARALERRLFARGIKVYLLDGDNL 41 (156)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHHHHHTTS-EEEEEHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEecCcch
Confidence 357899999999999999999876 778888876544
No 346
>PF00625 Guanylate_kin: Guanylate kinase; InterPro: IPR008144 Guanylate kinase (2.7.4.8 from EC) (GK) [] catalyzes the ATP-dependent phosphorylation of GMP into GDP. It is essential for recycling GMP and indirectly, cGMP. In prokaryotes (such as Escherichia coli), lower eukaryotes (such as yeast) and in vertebrates, GK is a highly conserved monomeric protein of about 200 amino acids. GK has been shown [, , ] to be structurally similar to protein A57R (or SalG2R) from various strains of Vaccinia virus. Proteins containing one or more copies of the DHR domain, an SH3 domain as well as a C-terminal GK-like domain, are collectively termed MAGUKs (membrane-associated guanylate kinase homologs) [], and include Drosophila lethal(1)discs large-1 tumor suppressor protein (gene dlg1); mammalian tight junction protein Zo-1; a family of mammalian synaptic proteins that seem to interact with the cytoplasmic tail of NMDA receptor subunits (SAP90/PSD-95, CHAPSYN-110/PSD-93, SAP97/DLG1 and SAP102); vertebrate 55kDa erythrocyte membrane protein (p55); Caenorhabditis elegans protein lin-2; rat protein CASK; and human proteins DLG2 and DLG3. There is an ATP-binding site (P-loop) in the N-terminal section of GK, which is not conserved in the GK-like domain of the above proteins. However these proteins retain the residues known, in GK, to be involved in the binding of GMP.; GO: 0005515 protein binding; PDB: 3UAT_A 3KFV_A 2ANC_F 2F3T_E 2ANB_A 2AN9_A 1S96_A 2F3R_B 3TR0_A 1LVG_A ....
Probab=96.88 E-value=0.0086 Score=54.63 Aligned_cols=29 Identities=31% Similarity=0.550 Sum_probs=25.8
Q ss_pred CceeEEeCCCCCcHHHHHHHHHHHcCCCe
Q 035603 227 KRGYLLFGPPGTGKSTMIAAMANCLNYDV 255 (431)
Q Consensus 227 ~rg~LL~GPPGtGKTsla~aiA~~l~~~i 255 (431)
+|-++|.||+|+|||+|++.|...+.-.|
T Consensus 2 ~r~ivl~Gpsg~GK~~l~~~L~~~~~~~~ 30 (183)
T PF00625_consen 2 RRPIVLVGPSGSGKSTLAKRLIQEFPDKF 30 (183)
T ss_dssp SSEEEEESSTTSSHHHHHHHHHHHSTTTE
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhccccc
Confidence 57899999999999999999999887554
No 347
>PF01745 IPT: Isopentenyl transferase; InterPro: IPR002648 Isopentenyl transferase / dimethylallyl transferase synthesizes isopentenyladensosine 5'-monophosphate, a cytokinin that induces shoot formation on host plants infected with the Ti plasmid [].; GO: 0004161 dimethylallyltranstransferase activity, 0009058 biosynthetic process; PDB: 2ZE8_C 2ZE5_A 2ZE7_A 2ZE6_A.
Probab=96.86 E-value=0.00098 Score=62.08 Aligned_cols=35 Identities=34% Similarity=0.543 Sum_probs=27.8
Q ss_pred eeEEeCCCCCcHHHHHHHHHHHcCCCeEEecccCc
Q 035603 229 GYLLFGPPGTGKSTMIAAMANCLNYDVYDLELTSV 263 (431)
Q Consensus 229 g~LL~GPPGtGKTsla~aiA~~l~~~i~~l~~~~~ 263 (431)
-+++.||+|||||.++-++|+.+|.+++.+|...+
T Consensus 3 v~~i~GpT~tGKt~~ai~lA~~~g~pvI~~Driq~ 37 (233)
T PF01745_consen 3 VYLIVGPTGTGKTALAIALAQKTGAPVISLDRIQC 37 (233)
T ss_dssp EEEEE-STTSSHHHHHHHHHHHH--EEEEE-SGGG
T ss_pred EEEEECCCCCChhHHHHHHHHHhCCCEEEecceec
Confidence 47899999999999999999999999999886543
No 348
>PRK12339 2-phosphoglycerate kinase; Provisional
Probab=96.86 E-value=0.0013 Score=61.20 Aligned_cols=29 Identities=24% Similarity=0.361 Sum_probs=25.7
Q ss_pred CceeEEeCCCCCcHHHHHHHHHHHcCCCe
Q 035603 227 KRGYLLFGPPGTGKSTMIAAMANCLNYDV 255 (431)
Q Consensus 227 ~rg~LL~GPPGtGKTsla~aiA~~l~~~i 255 (431)
++-+++.|+||+|||++++.+|..+++.+
T Consensus 3 ~~~i~i~G~~G~GKst~a~~l~~~~~~~~ 31 (197)
T PRK12339 3 STIHFIGGIPGVGKTSISGYIARHRAIDI 31 (197)
T ss_pred ceEEEEECCCCCCHHHHHHHHHHhcCCeE
Confidence 45688999999999999999999998754
No 349
>TIGR02012 tigrfam_recA protein RecA. This model describes orthologs of the recA protein. RecA promotes hybridization of homolgous regions of DNA. A segment of ssDNA can be hybridized to another ssDNA region, or to a dsDNA region. ATP is hydrolyzed in the process. Part of the SOS respones, it is regulated by LexA via autocatalytic cleavage.
Probab=96.84 E-value=0.0017 Score=64.69 Aligned_cols=40 Identities=18% Similarity=0.201 Sum_probs=30.7
Q ss_pred CCCCCceeEEeCCCCCcHHHHHHHHHHHc---CCCeEEecccC
Q 035603 223 GKAWKRGYLLFGPPGTGKSTMIAAMANCL---NYDVYDLELTS 262 (431)
Q Consensus 223 g~~~~rg~LL~GPPGtGKTsla~aiA~~l---~~~i~~l~~~~ 262 (431)
|+|..+.++++||||||||+|+..++.+. |-.++.++...
T Consensus 51 Glp~G~iteI~G~~GsGKTtLaL~~~~~~~~~g~~v~yId~E~ 93 (321)
T TIGR02012 51 GLPRGRIIEIYGPESSGKTTLALHAIAEAQKAGGTAAFIDAEH 93 (321)
T ss_pred CCcCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEEcccc
Confidence 67888889999999999999988665433 55666666554
No 350
>TIGR00152 dephospho-CoA kinase. This model produces scores in the range of 0-25 bits against adenylate, guanylate, uridine, and thymidylate kinases.
Probab=96.82 E-value=0.0053 Score=56.29 Aligned_cols=31 Identities=32% Similarity=0.399 Sum_probs=27.6
Q ss_pred eEEeCCCCCcHHHHHHHHHHHcCCCeEEecc
Q 035603 230 YLLFGPPGTGKSTMIAAMANCLNYDVYDLEL 260 (431)
Q Consensus 230 ~LL~GPPGtGKTsla~aiA~~l~~~i~~l~~ 260 (431)
+.|+|+||||||++++.++...++++++.|.
T Consensus 2 i~itG~~gsGKst~~~~l~~~~~~~~i~~D~ 32 (188)
T TIGR00152 2 IGLTGGIGSGKSTVANYLADKYHFPVIDADK 32 (188)
T ss_pred EEEECCCCCCHHHHHHHHHHhcCCeEEeCCH
Confidence 6799999999999999999988888887754
No 351
>COG2074 2-phosphoglycerate kinase [Carbohydrate transport and metabolism]
Probab=96.81 E-value=0.048 Score=52.11 Aligned_cols=34 Identities=26% Similarity=0.240 Sum_probs=29.2
Q ss_pred CCCCCceeEEeCCCCCcHHHHHHHHHHHcCCCeE
Q 035603 223 GKAWKRGYLLFGPPGTGKSTMIAAMANCLNYDVY 256 (431)
Q Consensus 223 g~~~~rg~LL~GPPGtGKTsla~aiA~~l~~~i~ 256 (431)
+...|.-+|+=|+||+||||+|.-+|..||++.+
T Consensus 85 ~~~~p~IILIGGasGVGkStIA~ElA~rLgI~~v 118 (299)
T COG2074 85 KMKRPLIILIGGASGVGKSTIAGELARRLGIRSV 118 (299)
T ss_pred ccCCCeEEEecCCCCCChhHHHHHHHHHcCCcee
Confidence 4555777889999999999999999999998754
No 352
>PRK04301 radA DNA repair and recombination protein RadA; Validated
Probab=96.80 E-value=0.005 Score=61.45 Aligned_cols=51 Identities=12% Similarity=0.167 Sum_probs=36.9
Q ss_pred CCCCCceeEEeCCCCCcHHHHHHHHHHHc---------CCCeEEecccCcCChHHHHHHH
Q 035603 223 GKAWKRGYLLFGPPGTGKSTMIAAMANCL---------NYDVYDLELTSVENNNELRSLL 273 (431)
Q Consensus 223 g~~~~rg~LL~GPPGtGKTsla~aiA~~l---------~~~i~~l~~~~~~~~~~l~~l~ 273 (431)
|++.+.-++++||||||||+++..+|... +..++.++...--..+.+.++.
T Consensus 98 Gi~~g~vtei~G~~GsGKT~l~~~~~~~~~~~~~~gg~~~~~~yi~te~~f~~~rl~~~~ 157 (317)
T PRK04301 98 GIETQSITEFYGEFGSGKTQICHQLAVNVQLPEEKGGLEGKAVYIDTEGTFRPERIEQMA 157 (317)
T ss_pred CccCCcEEEEECCCCCCHhHHHHHHHHHhccccccCCCCceEEEEeCCCCcCHHHHHHHH
Confidence 68888888999999999999999888653 3356667665533445555544
No 353
>COG4650 RtcR Sigma54-dependent transcription regulator containing an AAA-type ATPase domain and a DNA-binding domain [Transcription / Signal transduction mechanisms]
Probab=96.80 E-value=0.0034 Score=60.96 Aligned_cols=55 Identities=16% Similarity=0.310 Sum_probs=46.1
Q ss_pred CCCceeEEeCCCCCcHHHHHHHHH------HHcCCCeEEecccCcCChHHHHHHHHHhhhc
Q 035603 225 AWKRGYLLFGPPGTGKSTMIAAMA------NCLNYDVYDLELTSVENNNELRSLLVDISSK 279 (431)
Q Consensus 225 ~~~rg~LL~GPPGtGKTsla~aiA------~~l~~~i~~l~~~~~~~~~~l~~l~~~~~~~ 279 (431)
..+..+||.||.|.|||.||+.|- +.+.-.|+.+||..+.+...+..+|......
T Consensus 206 rsr~p~ll~gptgagksflarriyelk~arhq~sg~fvevncatlrgd~amsalfghvkga 266 (531)
T COG4650 206 RSRAPILLNGPTGAGKSFLARRIYELKQARHQFSGAFVEVNCATLRGDTAMSALFGHVKGA 266 (531)
T ss_pred hccCCeEeecCCCcchhHHHHHHHHHHHHHHhcCCceEEEeeeeecCchHHHHHHhhhccc
Confidence 345579999999999999999884 3567789999999998888888888776655
No 354
>PRK06851 hypothetical protein; Provisional
Probab=96.79 E-value=0.0043 Score=62.89 Aligned_cols=80 Identities=28% Similarity=0.425 Sum_probs=53.6
Q ss_pred CCceeEEeCCCCCcHHHHHHHHHHHc---CCCeEEecccCcCChHHHHHHHHHhhhcccchhhHHHHHHHHhcCcccCCC
Q 035603 226 WKRGYLLFGPPGTGKSTMIAAMANCL---NYDVYDLELTSVENNNELRSLLVDISSKKKKSNVTLSGLLNCIGGLWSTCG 302 (431)
Q Consensus 226 ~~rg~LL~GPPGtGKTsla~aiA~~l---~~~i~~l~~~~~~~~~~l~~l~~~~~~~~~~~~~~~s~lL~~ldg~~~~~~ 302 (431)
..+-++|.||||||||++++.++..+ |+++-.+-++.- + +.+||+.-..
T Consensus 29 ~~~~~il~G~pGtGKStl~~~i~~~~~~~g~~Ve~~~~~~d--~-------------------------~slDgviip~- 80 (367)
T PRK06851 29 ANRIFILKGGPGTGKSTLMKKIGEEFLEKGYDVEFLHCSSD--N-------------------------DSLDGVIIPE- 80 (367)
T ss_pred cceEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEEcCCC--C-------------------------CceeeEEecC-
Confidence 45789999999999999999999876 444333222221 0 1366664322
Q ss_pred CceEEEEecCCCCCCChhhhccCceeEEEEcCCC
Q 035603 303 GERIIVFTTNHVDKLDPALIRRGRMDKHIEMPYC 336 (431)
Q Consensus 303 ~~~ivI~TTN~~~~Ld~AllRpGRfd~~I~~~~p 336 (431)
--+.|+-.+.|..+||.. ||-+|..|.+.-+
T Consensus 81 -l~~aivDgtaph~~~P~~--pgav~eiinL~~~ 111 (367)
T PRK06851 81 -LKIAILDGTAPHVVDPKA--PGAVEEIINLGDA 111 (367)
T ss_pred -CCEEEEcCCCcCcCCCCC--CCcceEEEEHHHH
Confidence 134555555777888864 8888889988763
No 355
>PRK06851 hypothetical protein; Provisional
Probab=96.79 E-value=0.011 Score=59.97 Aligned_cols=75 Identities=28% Similarity=0.401 Sum_probs=51.4
Q ss_pred CCceeEEeCCCCCcHHHHHHHHHHHc---CCCeEEecccCcCChHHHHHHHHHhhhcccchhhHHHHHHHHhcCcccCCC
Q 035603 226 WKRGYLLFGPPGTGKSTMIAAMANCL---NYDVYDLELTSVENNNELRSLLVDISSKKKKSNVTLSGLLNCIGGLWSTCG 302 (431)
Q Consensus 226 ~~rg~LL~GPPGtGKTsla~aiA~~l---~~~i~~l~~~~~~~~~~l~~l~~~~~~~~~~~~~~~s~lL~~ldg~~~~~~ 302 (431)
..+-|+|.||||||||++++.++.++ |+++...-++.-- +.||++--.
T Consensus 213 ~~~~~~i~G~pG~GKstl~~~i~~~a~~~G~~v~~~hC~~dP---------------------------dslD~viIP-- 263 (367)
T PRK06851 213 VKNRYFLKGRPGTGKSTMLKKIAKAAEERGFDVEVYHCGFDP---------------------------DSLDMVIIP-- 263 (367)
T ss_pred cceEEEEeCCCCCcHHHHHHHHHHHHHhCCCeEEEEeCCCCC---------------------------CCcceEEec--
Confidence 45779999999999999999999877 6666655555421 125555322
Q ss_pred CceEEEEecCCCCCCChhhhccCceeEEEEc
Q 035603 303 GERIIVFTTNHVDKLDPALIRRGRMDKHIEM 333 (431)
Q Consensus 303 ~~~ivI~TTN~~~~Ld~AllRpGRfd~~I~~ 333 (431)
+-.+-|+..+.|..++|.- || |..|.+
T Consensus 264 el~~ai~d~t~ph~~~P~~--~g--~e~i~l 290 (367)
T PRK06851 264 ELNFAIFDSTAPHEYFPSR--EG--DEIIDM 290 (367)
T ss_pred cCCEEEEeCCCCcccCCCC--Cc--ceeeec
Confidence 2246667667777777754 76 777776
No 356
>PRK09270 nucleoside triphosphate hydrolase domain-containing protein; Reviewed
Probab=96.78 E-value=0.014 Score=55.38 Aligned_cols=27 Identities=33% Similarity=0.497 Sum_probs=23.2
Q ss_pred CceeEEeCCCCCcHHHHHHHHHHHcCC
Q 035603 227 KRGYLLFGPPGTGKSTMIAAMANCLNY 253 (431)
Q Consensus 227 ~rg~LL~GPPGtGKTsla~aiA~~l~~ 253 (431)
+.-+.|.||+|+|||+|++.|++.+..
T Consensus 33 ~~iigi~G~~GsGKTTl~~~L~~~l~~ 59 (229)
T PRK09270 33 RTIVGIAGPPGAGKSTLAEFLEALLQQ 59 (229)
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHhhh
Confidence 456778899999999999999998754
No 357
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=96.78 E-value=0.0076 Score=61.73 Aligned_cols=26 Identities=46% Similarity=0.731 Sum_probs=23.0
Q ss_pred CCceeEEeCCCCCcHHHHHHHHHHHc
Q 035603 226 WKRGYLLFGPPGTGKSTMIAAMANCL 251 (431)
Q Consensus 226 ~~rg~LL~GPPGtGKTsla~aiA~~l 251 (431)
.++-++|+||+|+||||++..+|..+
T Consensus 173 ~~~vi~lvGptGvGKTTT~aKLA~~~ 198 (388)
T PRK12723 173 KKRVFILVGPTGVGKTTTIAKLAAIY 198 (388)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 45678999999999999999999865
No 358
>COG0529 CysC Adenylylsulfate kinase and related kinases [Inorganic ion transport and metabolism]
Probab=96.78 E-value=0.0048 Score=55.79 Aligned_cols=37 Identities=35% Similarity=0.468 Sum_probs=30.9
Q ss_pred CceeEEeCCCCCcHHHHHHHHHHHc---CCCeEEecccCc
Q 035603 227 KRGYLLFGPPGTGKSTMIAAMANCL---NYDVYDLELTSV 263 (431)
Q Consensus 227 ~rg~LL~GPPGtGKTsla~aiA~~l---~~~i~~l~~~~~ 263 (431)
+..+.|.|.+|+||||+|.|++..| |+..|.+|...+
T Consensus 23 ~~viW~TGLSGsGKSTiA~ale~~L~~~G~~~y~LDGDnv 62 (197)
T COG0529 23 GAVIWFTGLSGSGKSTIANALEEKLFAKGYHVYLLDGDNV 62 (197)
T ss_pred CeEEEeecCCCCCHHHHHHHHHHHHHHcCCeEEEecChhH
Confidence 4567899999999999999999865 788888876543
No 359
>cd02022 DPCK Dephospho-coenzyme A kinase (DPCK, EC 2.7.1.24) catalyzes the phosphorylation of dephosphocoenzyme A (dCoA) to yield CoA, which is the final step in CoA biosynthesis.
Probab=96.78 E-value=0.0014 Score=59.79 Aligned_cols=30 Identities=33% Similarity=0.379 Sum_probs=26.8
Q ss_pred eEEeCCCCCcHHHHHHHHHHHcCCCeEEecc
Q 035603 230 YLLFGPPGTGKSTMIAAMANCLNYDVYDLEL 260 (431)
Q Consensus 230 ~LL~GPPGtGKTsla~aiA~~l~~~i~~l~~ 260 (431)
+.|+|+||+|||++++.+++ +|+++++.|.
T Consensus 2 i~itG~~gsGKst~~~~l~~-~g~~~i~~D~ 31 (179)
T cd02022 2 IGLTGGIGSGKSTVAKLLKE-LGIPVIDADK 31 (179)
T ss_pred EEEECCCCCCHHHHHHHHHH-CCCCEEecCH
Confidence 67999999999999999999 8988887654
No 360
>cd00983 recA RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange.
Probab=96.77 E-value=0.0021 Score=64.08 Aligned_cols=40 Identities=23% Similarity=0.256 Sum_probs=31.6
Q ss_pred CCCCCceeEEeCCCCCcHHHHHHHHHHH---cCCCeEEecccC
Q 035603 223 GKAWKRGYLLFGPPGTGKSTMIAAMANC---LNYDVYDLELTS 262 (431)
Q Consensus 223 g~~~~rg~LL~GPPGtGKTsla~aiA~~---l~~~i~~l~~~~ 262 (431)
|+|..+-+++|||||||||+|+-.++.. .|-.++.++...
T Consensus 51 Glp~G~iteI~Gp~GsGKTtLal~~~~~~~~~g~~~vyId~E~ 93 (325)
T cd00983 51 GYPKGRIIEIYGPESSGKTTLALHAIAEAQKLGGTVAFIDAEH 93 (325)
T ss_pred CccCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCCEEEECccc
Confidence 6777788999999999999999987643 466677776644
No 361
>PRK05541 adenylylsulfate kinase; Provisional
Probab=96.76 E-value=0.0017 Score=58.81 Aligned_cols=26 Identities=27% Similarity=0.351 Sum_probs=23.5
Q ss_pred CceeEEeCCCCCcHHHHHHHHHHHcC
Q 035603 227 KRGYLLFGPPGTGKSTMIAAMANCLN 252 (431)
Q Consensus 227 ~rg~LL~GPPGtGKTsla~aiA~~l~ 252 (431)
+.-++|.||||+|||+++++++..+.
T Consensus 7 ~~~I~i~G~~GsGKst~a~~l~~~l~ 32 (176)
T PRK05541 7 GYVIWITGLAGSGKTTIAKALYERLK 32 (176)
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHHHH
Confidence 45688999999999999999999886
No 362
>PF00519 PPV_E1_C: Papillomavirus helicase; InterPro: IPR001177 Papillomaviruses are a large family of DNA tumour viruses which give rise to warts in their host species. The helicase E1 protein is an ATP-dependent DNA helicase required for initiation of viral DNA replication []. It forms a complex with the viral E2 protein, which is a site-specific DNA-binding transcriptional activator. The E1-E2 complex binds to the replication origin which contains binding sites for both proteins []. The E1 protein is a 70 kDa polypeptide with a central DNA-binding domain and a C-terminal ATPase/helicase domain. It binds specific 18 bp DNA sequences at the origin of replication, melts the DNA duplex and functions as a 3' to 5' helicase []. In addition to E2 it also interacts with DNA polymerase alpha and replication protein A to effect DNA replication. The DNA-binding domain forms a five-stranded antiparallel beta sheet bordered by four loosely packed alpha helices on one side and two tightly packed helices on the other []. Two structural modules within this domain, an extended loop and a helix, contain conserved residues and are critical for DNA binding. In solution E1 is a monomer, but binds DNA as a dimer. Recruitment of more E1 subunits to the complex leads to melting of the origin and ultimately to the formation of an E1 hexamer with helicase activity []. The entry represents the C-terminal region of E1, containing both the DNA-binding and ATPase/helical domains.; GO: 0003677 DNA binding, 0004003 ATP-dependent DNA helicase activity, 0005524 ATP binding, 0006260 DNA replication; PDB: 1TUE_K 1R9W_A 2V9P_B 2GXA_I 1KSX_J 1KSY_A 1F08_B.
Probab=96.76 E-value=0.0026 Score=64.13 Aligned_cols=35 Identities=31% Similarity=0.531 Sum_probs=32.0
Q ss_pred CCCCCceeEEeCCCCCcHHHHHHHHHHHcCCCeEE
Q 035603 223 GKAWKRGYLLFGPPGTGKSTMIAAMANCLNYDVYD 257 (431)
Q Consensus 223 g~~~~rg~LL~GPPGtGKTsla~aiA~~l~~~i~~ 257 (431)
|+|.+.++++||||+||||+++-.+-+.++-.++.
T Consensus 258 g~PKKnClvi~GPPdTGKS~F~~SLi~Fl~GkViS 292 (432)
T PF00519_consen 258 GIPKKNCLVIYGPPDTGKSMFCMSLIKFLKGKVIS 292 (432)
T ss_dssp TBTTSSEEEEESSCCCSHHHHHHHHHHHHTSEEE-
T ss_pred CCCcccEEEEECCCCCchhHHHHHHHHHhCCEEEE
Confidence 78999999999999999999999999999887765
No 363
>PRK10365 transcriptional regulatory protein ZraR; Provisional
Probab=96.74 E-value=0.016 Score=60.19 Aligned_cols=65 Identities=17% Similarity=0.228 Sum_probs=44.4
Q ss_pred cccChhhHHHHHHHHHHHHhCHHHHHHhCCCCCceeEEeCCCCCcHHHHHHHHHHHc---CCCeEEecccCcCChHHHHH
Q 035603 195 LAMASKKKEAIKKDLIKFTEGKEYYAKIGKAWKRGYLLFGPPGTGKSTMIAAMANCL---NYDVYDLELTSVENNNELRS 271 (431)
Q Consensus 195 l~g~~~~k~~i~~~l~~~~~~~~~~~~~g~~~~rg~LL~GPPGtGKTsla~aiA~~l---~~~i~~l~~~~~~~~~~l~~ 271 (431)
+.+.......+.+++..+. +....++++|.+||||+++++++.... +.+|+.+++..+.. ..+..
T Consensus 141 lig~s~~~~~~~~~i~~~~-----------~~~~~vli~ge~g~gk~~~a~~ih~~s~~~~~~~i~~~c~~~~~-~~~~~ 208 (441)
T PRK10365 141 MVGKSPAMQHLLSEIALVA-----------PSEATVLIHGDSGTGKELVARAIHASSARSEKPLVTLNCAALNE-SLLES 208 (441)
T ss_pred eEecCHHHHHHHHHHhhcc-----------CCCCeEEEEecCCCCHHHHHHHHHHcCCCCCCCeeeeeCCCCCH-HHHHH
Confidence 4555555555555443221 234679999999999999999997654 46899999998743 33443
No 364
>PF06745 KaiC: KaiC; InterPro: IPR014774 This entry represents a domain within bacterial and archaeal proteins, most of which are hypothetical. More than one copy is sometimes found in each protein in this entry. These include KaiC, which is one of the Kai proteins among which direct protein-protein association may be a critical process in the generation of circadian rhythms in cyanobacteria []. The circadian clock protein KaiC, is encoded in the kaiABC operon that controls circadian rhythms and may be universal in Cyanobacteria. Each member contains two copies of this domain, which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor. RadA/Sms is a highly conserved eubacterial protein that shares sequence similarity with both RecA strand transferase and lon protease. The RadA/Sms family are probable ATP-dependent proteases involved in both DNA repair and degradation of proteins, peptides, glycopeptides. They are classified in as non-peptidase homologues and unassigned peptidases in MEROPS peptidase family S16 (lon protease family, clan SJ). RadA/Sms is involved in recombination and recombinational repair, most likely involving the stabilisation or processing of branched DNA molecules or blocked replication forks because of its genetic redundancy with RecG and RuvABC [].; PDB: 2W0M_A 2ZTS_C 4DUG_B 3K0E_B 3K09_B 3S1A_E 3JZM_E 2GBL_B 3DVL_A 1TF7_C ....
Probab=96.74 E-value=0.0014 Score=61.89 Aligned_cols=40 Identities=25% Similarity=0.331 Sum_probs=30.6
Q ss_pred CCCCCceeEEeCCCCCcHHHHHHHHHHHc----CCCeEEecccC
Q 035603 223 GKAWKRGYLLFGPPGTGKSTMIAAMANCL----NYDVYDLELTS 262 (431)
Q Consensus 223 g~~~~rg~LL~GPPGtGKTsla~aiA~~l----~~~i~~l~~~~ 262 (431)
|+|.+..+|+.||||||||+|+..++... |-+++.++...
T Consensus 15 Gip~gs~~li~G~~GsGKT~l~~q~l~~~~~~~ge~vlyvs~ee 58 (226)
T PF06745_consen 15 GIPKGSVVLISGPPGSGKTTLALQFLYNGLKNFGEKVLYVSFEE 58 (226)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHHHHHHHHT--EEEEESSS
T ss_pred CCCCCcEEEEEeCCCCCcHHHHHHHHHHhhhhcCCcEEEEEecC
Confidence 78888889999999999999998766432 77777776544
No 365
>PRK13764 ATPase; Provisional
Probab=96.73 E-value=0.0017 Score=69.71 Aligned_cols=26 Identities=42% Similarity=0.700 Sum_probs=24.0
Q ss_pred CceeEEeCCCCCcHHHHHHHHHHHcC
Q 035603 227 KRGYLLFGPPGTGKSTMIAAMANCLN 252 (431)
Q Consensus 227 ~rg~LL~GPPGtGKTsla~aiA~~l~ 252 (431)
++++|+.||||+||||+++|++.++.
T Consensus 257 ~~~ILIsG~TGSGKTTll~AL~~~i~ 282 (602)
T PRK13764 257 AEGILIAGAPGAGKSTFAQALAEFYA 282 (602)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHh
Confidence 57899999999999999999998875
No 366
>TIGR03878 thermo_KaiC_2 KaiC domain protein, AF_0795 family. This KaiC domain-containing protein family occurs sporadically across a broad taxonomic range (Euryarchaeota, Aquificae, Dictyoglomi, Epsilonproteobacteria, and Firmicutes), but exclusively in thermophiles.
Probab=96.73 E-value=0.0017 Score=62.92 Aligned_cols=39 Identities=23% Similarity=0.155 Sum_probs=31.1
Q ss_pred CCCCCceeEEeCCCCCcHHHHHHHHHHH---cCCCeEEeccc
Q 035603 223 GKAWKRGYLLFGPPGTGKSTMIAAMANC---LNYDVYDLELT 261 (431)
Q Consensus 223 g~~~~rg~LL~GPPGtGKTsla~aiA~~---l~~~i~~l~~~ 261 (431)
|+|....+|++||||||||+++..+|.. .|.+++.++..
T Consensus 32 Gip~gs~~lI~G~pGtGKT~l~~qf~~~~a~~Ge~vlyis~E 73 (259)
T TIGR03878 32 GIPAYSVINITGVSDTGKSLMVEQFAVTQASRGNPVLFVTVE 73 (259)
T ss_pred CeECCcEEEEEcCCCCCHHHHHHHHHHHHHhCCCcEEEEEec
Confidence 6788888999999999999999987653 35666666654
No 367
>TIGR01618 phage_P_loop phage nucleotide-binding protein. This model represents an uncharacterized family of proteins from a number of phage of Gram-positive bacteria. This protein contains a P-loop motif, G/A-X-X-G-X-G-K-T near its amino end. The function of this protein is unknown.
Probab=96.73 E-value=0.0008 Score=63.52 Aligned_cols=23 Identities=39% Similarity=0.807 Sum_probs=20.4
Q ss_pred CceeEEeCCCCCcHHHHHHHHHH
Q 035603 227 KRGYLLFGPPGTGKSTMIAAMAN 249 (431)
Q Consensus 227 ~rg~LL~GPPGtGKTsla~aiA~ 249 (431)
+.-+|+||+||+|||++|+.+++
T Consensus 12 ~~~~liyG~~G~GKtt~a~~~~~ 34 (220)
T TIGR01618 12 PNMYLIYGKPGTGKTSTIKYLPG 34 (220)
T ss_pred CcEEEEECCCCCCHHHHHHhcCC
Confidence 35599999999999999999974
No 368
>PF05272 VirE: Virulence-associated protein E; InterPro: IPR007936 This family contains several bacterial virulence-associated protein E like proteins.
Probab=96.72 E-value=0.0076 Score=56.05 Aligned_cols=28 Identities=29% Similarity=0.359 Sum_probs=24.0
Q ss_pred CCCCCceeEEeCCCCCcHHHHHHHHHHH
Q 035603 223 GKAWKRGYLLFGPPGTGKSTMIAAMANC 250 (431)
Q Consensus 223 g~~~~rg~LL~GPPGtGKTsla~aiA~~ 250 (431)
|....-.++|.|+-|+|||++++.|+.+
T Consensus 48 g~k~d~~lvl~G~QG~GKStf~~~L~~~ 75 (198)
T PF05272_consen 48 GCKNDTVLVLVGKQGIGKSTFFRKLGPE 75 (198)
T ss_pred CCcCceeeeEecCCcccHHHHHHHHhHH
Confidence 5555667889999999999999999766
No 369
>KOG1514 consensus Origin recognition complex, subunit 1, and related proteins [Replication, recombination and repair]
Probab=96.72 E-value=0.055 Score=58.34 Aligned_cols=123 Identities=16% Similarity=0.196 Sum_probs=72.9
Q ss_pred ceeEEeCCCCCcHHHHHHHHHHHcC----------CCeEEecccCcCChHHHHHHHHHhhhc------------------
Q 035603 228 RGYLLFGPPGTGKSTMIAAMANCLN----------YDVYDLELTSVENNNELRSLLVDISSK------------------ 279 (431)
Q Consensus 228 rg~LL~GPPGtGKTsla~aiA~~l~----------~~i~~l~~~~~~~~~~l~~l~~~~~~~------------------ 279 (431)
.++.++|-||||||.+++.+-.+|. +.++.+|...+....++-..+-.....
T Consensus 423 ~~mYIsGvPGtGKT~tV~~Vm~~Lq~~s~~~e~p~f~yveINgm~l~~~~~~Y~~I~~~lsg~~~~~~~al~~L~~~f~~ 502 (767)
T KOG1514|consen 423 SCMYISGVPGTGKTATVLEVMKELQTSSAQKELPKFDYVEINGLRLASPREIYEKIWEALSGERVTWDAALEALNFRFTV 502 (767)
T ss_pred eeEEEecCCCCCceehHHHHHHHHHHHHhhcCCCCccEEEEcceeecCHHHHHHHHHHhcccCcccHHHHHHHHHHhhcc
Confidence 3677889999999999999988664 567777777665544432222111111
Q ss_pred ------------cc---chhhHHHHHHHHhcCcccCCCCceEEEEecCCCCCCChhhhcc---Ccee-EEEEcCCCCHHH
Q 035603 280 ------------KK---KSNVTLSGLLNCIGGLWSTCGGERIIVFTTNHVDKLDPALIRR---GRMD-KHIEMPYCCFEA 340 (431)
Q Consensus 280 ------------~~---~~~~~~s~lL~~ldg~~~~~~~~~ivI~TTN~~~~Ld~AllRp---GRfd-~~I~~~~p~~~~ 340 (431)
+. --.....-|-|.+|-.. ..+...+||+..|.-+ |+.-++-+ -|++ ..|.|.+.+..+
T Consensus 503 ~k~~~~~~VvLiDElD~Lvtr~QdVlYn~fdWpt-~~~sKLvvi~IaNTmd-lPEr~l~nrvsSRlg~tRi~F~pYth~q 580 (767)
T KOG1514|consen 503 PKPKRSTTVVLIDELDILVTRSQDVLYNIFDWPT-LKNSKLVVIAIANTMD-LPERLLMNRVSSRLGLTRICFQPYTHEQ 580 (767)
T ss_pred CCCCCCCEEEEeccHHHHhcccHHHHHHHhcCCc-CCCCceEEEEeccccc-CHHHHhccchhhhccceeeecCCCCHHH
Confidence 11 01112334556666432 2344567777777654 33333310 1443 357788889999
Q ss_pred HHHHHHHhhchh
Q 035603 341 FKVLAKNYLEIE 352 (431)
Q Consensus 341 r~~i~~~~l~~~ 352 (431)
..+|+..-|...
T Consensus 581 Lq~Ii~~RL~~~ 592 (767)
T KOG1514|consen 581 LQEIISARLKGL 592 (767)
T ss_pred HHHHHHHhhcch
Confidence 999988877543
No 370
>PF06414 Zeta_toxin: Zeta toxin; InterPro: IPR010488 This entry represents a domain originally identified in bacterial zeta toxin proteins, where it comprises the whole protein []. It has subsequently been found in a number of other proteins, such as polynucleotide kinase and 2',3'-cyclic-nucleotide 3'-phosphodiesterase. It appears to function as a kinase domain [, ].; GO: 0005524 ATP binding, 0016301 kinase activity; PDB: 2P5T_H 1GVN_B 3Q8X_D.
Probab=96.72 E-value=0.0029 Score=58.59 Aligned_cols=39 Identities=18% Similarity=0.287 Sum_probs=30.0
Q ss_pred CCCceeEEeCCCCCcHHHHHHHHHHHc-CCCeEEecccCc
Q 035603 225 AWKRGYLLFGPPGTGKSTMIAAMANCL-NYDVYDLELTSV 263 (431)
Q Consensus 225 ~~~rg~LL~GPPGtGKTsla~aiA~~l-~~~i~~l~~~~~ 263 (431)
..|.-+++-||||+|||+++..+...+ +-.++.++...+
T Consensus 13 ~~P~~~i~aG~~GsGKSt~~~~~~~~~~~~~~v~i~~D~~ 52 (199)
T PF06414_consen 13 EKPTLIIIAGQPGSGKSTLARQLLEEFGGGGIVVIDADEF 52 (199)
T ss_dssp SS-EEEEEES-TTSTTHHHHHHHHHHT-TT-SEEE-GGGG
T ss_pred cCCEEEEEeCCCCCCHHHHHHHhhhhccCCCeEEEehHHH
Confidence 456789999999999999999999988 677788877665
No 371
>TIGR02236 recomb_radA DNA repair and recombination protein RadA. This family consists exclusively of archaeal RadA protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239), and archaeal RadB (TIGR02237). This protein is involved in DNA repair and recombination. The member from Pyrococcus horikoshii contains an intein.
Probab=96.72 E-value=0.0038 Score=61.99 Aligned_cols=51 Identities=14% Similarity=0.161 Sum_probs=37.0
Q ss_pred CCCCCceeEEeCCCCCcHHHHHHHHHHHc---------CCCeEEecccCcCChHHHHHHH
Q 035603 223 GKAWKRGYLLFGPPGTGKSTMIAAMANCL---------NYDVYDLELTSVENNNELRSLL 273 (431)
Q Consensus 223 g~~~~rg~LL~GPPGtGKTsla~aiA~~l---------~~~i~~l~~~~~~~~~~l~~l~ 273 (431)
|++.+.-++++||||||||+++..+|... +-.++.++..+--..+.+.++.
T Consensus 91 Gi~~g~i~ei~G~~g~GKT~l~~~~~~~~~~~~~~g~~~~~~~yi~te~~f~~~rl~~~~ 150 (310)
T TIGR02236 91 GIETQAITEVFGEFGSGKTQICHQLAVNVQLPEEKGGLGGKAVYIDTENTFRPERIMQMA 150 (310)
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHHHhcCCcccCCCcceEEEEECCCCCCHHHHHHHH
Confidence 67877888999999999999999888653 2256667665533455555554
No 372
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs. A related protein is found in archaea.
Probab=96.71 E-value=0.0018 Score=58.71 Aligned_cols=32 Identities=31% Similarity=0.312 Sum_probs=24.9
Q ss_pred eEEeCCCCCcHHHHHHHHHHHc---CCCeEEeccc
Q 035603 230 YLLFGPPGTGKSTMIAAMANCL---NYDVYDLELT 261 (431)
Q Consensus 230 ~LL~GPPGtGKTsla~aiA~~l---~~~i~~l~~~ 261 (431)
+|++||||||||+++..++.+. |.+++.++..
T Consensus 2 ~li~G~~G~GKT~l~~~~~~~~~~~g~~v~~~s~e 36 (187)
T cd01124 2 TLLSGGPGTGKTTFALQFLYAGLARGEPGLYVTLE 36 (187)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHHCCCcEEEEECC
Confidence 6899999999999999887643 5566666543
No 373
>COG0467 RAD55 RecA-superfamily ATPases implicated in signal transduction [Signal transduction mechanisms]
Probab=96.71 E-value=0.0036 Score=60.48 Aligned_cols=49 Identities=24% Similarity=0.243 Sum_probs=36.4
Q ss_pred CCCCCceeEEeCCCCCcHHHHHHHHHHHc---CCCeEEecccCcCChHHHHHHH
Q 035603 223 GKAWKRGYLLFGPPGTGKSTMIAAMANCL---NYDVYDLELTSVENNNELRSLL 273 (431)
Q Consensus 223 g~~~~rg~LL~GPPGtGKTsla~aiA~~l---~~~i~~l~~~~~~~~~~l~~l~ 273 (431)
|+|..+.+|++|+||||||+++...+... |.+++.++... +..++.+.+
T Consensus 19 G~p~g~~~lI~G~pGsGKT~f~~qfl~~~~~~ge~vlyvs~~e--~~~~l~~~~ 70 (260)
T COG0467 19 GLPRGSVVLITGPPGTGKTIFALQFLYEGAREGEPVLYVSTEE--SPEELLENA 70 (260)
T ss_pred CCcCCcEEEEEcCCCCcHHHHHHHHHHHHHhcCCcEEEEEecC--CHHHHHHHH
Confidence 68888899999999999999998877533 66777776665 344444433
No 374
>PRK00889 adenylylsulfate kinase; Provisional
Probab=96.70 E-value=0.0021 Score=58.11 Aligned_cols=34 Identities=32% Similarity=0.373 Sum_probs=26.8
Q ss_pred CceeEEeCCCCCcHHHHHHHHHHHc---CCCeEEecc
Q 035603 227 KRGYLLFGPPGTGKSTMIAAMANCL---NYDVYDLEL 260 (431)
Q Consensus 227 ~rg~LL~GPPGtGKTsla~aiA~~l---~~~i~~l~~ 260 (431)
+.-+.|.|+||+|||++++++|..+ +.++..++.
T Consensus 4 g~~i~~~G~~GsGKST~a~~la~~l~~~g~~v~~id~ 40 (175)
T PRK00889 4 GVTVWFTGLSGAGKTTIARALAEKLREAGYPVEVLDG 40 (175)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEcC
Confidence 4467899999999999999999987 334555544
No 375
>PRK12338 hypothetical protein; Provisional
Probab=96.68 E-value=0.0016 Score=64.67 Aligned_cols=30 Identities=30% Similarity=0.337 Sum_probs=26.7
Q ss_pred CceeEEeCCCCCcHHHHHHHHHHHcCCCeE
Q 035603 227 KRGYLLFGPPGTGKSTMIAAMANCLNYDVY 256 (431)
Q Consensus 227 ~rg~LL~GPPGtGKTsla~aiA~~l~~~i~ 256 (431)
|.-+++.|+||||||++|+++|..+|+..+
T Consensus 4 p~ii~i~G~sGsGKST~a~~la~~l~~~~~ 33 (319)
T PRK12338 4 PYVILIGSASGIGKSTIASELARTLNIKHL 33 (319)
T ss_pred cEEEEEECCCCCCHHHHHHHHHHHCCCeEE
Confidence 467899999999999999999999997654
No 376
>TIGR03877 thermo_KaiC_1 KaiC domain protein, Ph0284 family. Members of this family contain a single copy of the KaiC domain (pfam06745) that occurs in two copies of the circadian clock protein kinase KaiC itself. Members occur primarily in thermophilic archaea and in Thermotoga.
Probab=96.68 E-value=0.0023 Score=61.08 Aligned_cols=40 Identities=28% Similarity=0.258 Sum_probs=31.5
Q ss_pred CCCCCceeEEeCCCCCcHHHHHHHHHHH---cCCCeEEecccC
Q 035603 223 GKAWKRGYLLFGPPGTGKSTMIAAMANC---LNYDVYDLELTS 262 (431)
Q Consensus 223 g~~~~rg~LL~GPPGtGKTsla~aiA~~---l~~~i~~l~~~~ 262 (431)
|++....+|++||||||||+++..++.+ -|-+.+.++...
T Consensus 17 G~~~gs~~lI~G~pGsGKT~la~~~l~~~~~~ge~~lyvs~ee 59 (237)
T TIGR03877 17 GIPERNVVLLSGGPGTGKSIFSQQFLWNGLQMGEPGIYVALEE 59 (237)
T ss_pred CCcCCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCcEEEEEeeC
Confidence 7888889999999999999999876543 366676666543
No 377
>PRK06067 flagellar accessory protein FlaH; Validated
Probab=96.68 E-value=0.0023 Score=60.73 Aligned_cols=39 Identities=26% Similarity=0.318 Sum_probs=32.0
Q ss_pred CCCCCceeEEeCCCCCcHHHHHHHHHHH---cCCCeEEeccc
Q 035603 223 GKAWKRGYLLFGPPGTGKSTMIAAMANC---LNYDVYDLELT 261 (431)
Q Consensus 223 g~~~~rg~LL~GPPGtGKTsla~aiA~~---l~~~i~~l~~~ 261 (431)
|+|.+..++++||||||||+++..++.+ .|..++.++..
T Consensus 21 G~~~g~~~~i~G~~GsGKt~l~~~~~~~~~~~g~~~~y~~~e 62 (234)
T PRK06067 21 GIPFPSLILIEGDHGTGKSVLSQQFVYGALKQGKKVYVITTE 62 (234)
T ss_pred CCcCCcEEEEECCCCCChHHHHHHHHHHHHhCCCEEEEEEcC
Confidence 7888889999999999999999999754 36667666654
No 378
>PF00437 T2SE: Type II/IV secretion system protein; InterPro: IPR001482 A number of bacterial proteins, some of which are involved in a general secretion pathway (GSP) for the export of proteins (also called the type II pathway) belong to this group [, ]. These proteins are probably located in the cytoplasm and, on the basis of the presence of a conserved P-loop region IPR001687 from INTERPRO, bind ATP.; GO: 0005524 ATP binding, 0006810 transport, 0005622 intracellular; PDB: 1NLZ_C 2PT7_B 1OPX_A 1NLY_A 1G6O_B 2OAQ_2 2OAP_1 2JNQ_A 2JMZ_A 2GZA_B ....
Probab=96.68 E-value=0.0022 Score=62.25 Aligned_cols=56 Identities=23% Similarity=0.379 Sum_probs=40.9
Q ss_pred CCCCccccccChhhHHHHHHHHHHHHhCHHHHHHhCCCCCceeEEeCCCCCcHHHHHHHHHHHcCCC
Q 035603 188 HPATFDTLAMASKKKEAIKKDLIKFTEGKEYYAKIGKAWKRGYLLFGPPGTGKSTMIAAMANCLNYD 254 (431)
Q Consensus 188 ~p~~f~~l~g~~~~k~~i~~~l~~~~~~~~~~~~~g~~~~rg~LL~GPPGtGKTsla~aiA~~l~~~ 254 (431)
.+.++++++..+...+.+.+.+..... .+..+|+.||+|+|||++++++..++...
T Consensus 99 ~~~sle~l~~~~~~~~~~~~~l~~~v~-----------~~~~ili~G~tGSGKTT~l~all~~i~~~ 154 (270)
T PF00437_consen 99 KPFSLEDLGESGSIPEEIAEFLRSAVR-----------GRGNILISGPTGSGKTTLLNALLEEIPPE 154 (270)
T ss_dssp S--CHCCCCHTHHCHHHHHHHHHHCHH-----------TTEEEEEEESTTSSHHHHHHHHHHHCHTT
T ss_pred ccccHhhccCchhhHHHHHHHHhhccc-----------cceEEEEECCCccccchHHHHHhhhcccc
Confidence 345789988877766666555443332 24689999999999999999999987654
No 379
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=96.67 E-value=0.0043 Score=60.58 Aligned_cols=60 Identities=27% Similarity=0.220 Sum_probs=37.4
Q ss_pred hHHHHHHHHHHHHhCH-HHHHHhCCCCCceeEEeCCCCCcHHHHHHHHHHHc---CCCeEEeccc
Q 035603 201 KKEAIKKDLIKFTEGK-EYYAKIGKAWKRGYLLFGPPGTGKSTMIAAMANCL---NYDVYDLELT 261 (431)
Q Consensus 201 ~k~~i~~~l~~~~~~~-~~~~~~g~~~~rg~LL~GPPGtGKTsla~aiA~~l---~~~i~~l~~~ 261 (431)
+.+.+.+.+...+... ..+. .....++-++|.||||+|||+++..+|..+ |..+..+++.
T Consensus 46 ~~~~~~e~l~~~~~~~~~~~~-~~~~~~~vi~l~G~~G~GKTTt~akLA~~l~~~g~~V~li~~D 109 (272)
T TIGR00064 46 LKEILKEYLKEILKETDLELI-VEENKPNVILFVGVNGVGKTTTIAKLANKLKKQGKSVLLAAGD 109 (272)
T ss_pred HHHHHHHHHHHHHcccchhhc-ccCCCCeEEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEEeCC
Confidence 4455555555555431 1122 112335678899999999999999998766 5556555544
No 380
>TIGR02322 phosphon_PhnN phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN. Members of this family resemble PhnN of phosphonate utilization operons, where different such operons confer the ability to use somewhat different profiles of C-P bond-containing compounds (see PubMed:15231805), including phosphites as well as phosphonates. PhnN in E. coli shows considerable homology to guanylate kinases (EC 2.7.4.8), and has actually been shown to act as a ribose 1,5-bisphosphokinase (PRPP forming). This suggests an analogous kinase reaction for phosphonate metabolism, converting 5-phosphoalpha-1-(methylphosphono)ribose to methylphosphono-PRPP.
Probab=96.66 E-value=0.0016 Score=59.02 Aligned_cols=25 Identities=28% Similarity=0.406 Sum_probs=22.6
Q ss_pred eeEEeCCCCCcHHHHHHHHHHHcCC
Q 035603 229 GYLLFGPPGTGKSTMIAAMANCLNY 253 (431)
Q Consensus 229 g~LL~GPPGtGKTsla~aiA~~l~~ 253 (431)
-+++.||||+|||+++++|+..++.
T Consensus 3 ~~~i~G~sGsGKttl~~~l~~~~~~ 27 (179)
T TIGR02322 3 LIYVVGPSGAGKDTLLDYARARLAG 27 (179)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcCc
Confidence 4789999999999999999998764
No 381
>PLN02165 adenylate isopentenyltransferase
Probab=96.65 E-value=0.0019 Score=64.46 Aligned_cols=34 Identities=18% Similarity=0.394 Sum_probs=29.9
Q ss_pred ceeEEeCCCCCcHHHHHHHHHHHcCCCeEEeccc
Q 035603 228 RGYLLFGPPGTGKSTMIAAMANCLNYDVYDLELT 261 (431)
Q Consensus 228 rg~LL~GPPGtGKTsla~aiA~~l~~~i~~l~~~ 261 (431)
.-+.|.||+|+|||+|+..||..++..++..|..
T Consensus 44 ~iivIiGPTGSGKStLA~~LA~~l~~eIIsaDs~ 77 (334)
T PLN02165 44 KVVVIMGATGSGKSRLSVDLATRFPSEIINSDKM 77 (334)
T ss_pred CEEEEECCCCCcHHHHHHHHHHHcCCceecCChh
Confidence 4588999999999999999999999888877654
No 382
>COG1485 Predicted ATPase [General function prediction only]
Probab=96.65 E-value=0.0062 Score=60.70 Aligned_cols=30 Identities=27% Similarity=0.411 Sum_probs=25.1
Q ss_pred CCCCceeEEeCCCCCcHHHHHHHHHHHcCC
Q 035603 224 KAWKRGYLLFGPPGTGKSTMIAAMANCLNY 253 (431)
Q Consensus 224 ~~~~rg~LL~GPPGtGKTsla~aiA~~l~~ 253 (431)
.+.++|+.||||=|+|||.|....-..+..
T Consensus 62 ~~~~~GlYl~GgVGrGKT~LMD~Fy~~lp~ 91 (367)
T COG1485 62 HGPVRGLYLWGGVGRGKTMLMDLFYESLPG 91 (367)
T ss_pred CCCCceEEEECCCCccHHHHHHHHHhhCCc
Confidence 456799999999999999999887776643
No 383
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=96.64 E-value=0.0031 Score=65.53 Aligned_cols=63 Identities=17% Similarity=0.199 Sum_probs=40.9
Q ss_pred hhHHHHHHHHHHHHhCHHHHHHhCCCCCceeEEeCCCCCcHHHHHHHHHHHc---CCCeEEecccCc
Q 035603 200 KKKEAIKKDLIKFTEGKEYYAKIGKAWKRGYLLFGPPGTGKSTMIAAMANCL---NYDVYDLELTSV 263 (431)
Q Consensus 200 ~~k~~i~~~l~~~~~~~~~~~~~g~~~~rg~LL~GPPGtGKTsla~aiA~~l---~~~i~~l~~~~~ 263 (431)
.+.+.+.+.+...+.......... ..|.-++|+||||+|||+++..+|..+ |..+..+++...
T Consensus 69 ~~~~~v~~~L~~~l~~~~~~~~~~-~~p~vI~lvG~~GsGKTTtaakLA~~L~~~g~kV~lV~~D~~ 134 (437)
T PRK00771 69 HVIKIVYEELVKLLGEETEPLVLP-LKPQTIMLVGLQGSGKTTTAAKLARYFKKKGLKVGLVAADTY 134 (437)
T ss_pred HHHHHHHHHHHHHhCCCccccccC-CCCeEEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEecCCCC
Confidence 445566666666554322111111 346789999999999999999999876 556666655444
No 384
>TIGR02782 TrbB_P P-type conjugative transfer ATPase TrbB. The TrbB protein is found in the trb locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for plasmid conjugative transfer. TrbB is a homolog of the vir system VirB11 ATPase, and the Flp pilus sytem ATPase TadA.
Probab=96.64 E-value=0.0029 Score=62.61 Aligned_cols=25 Identities=28% Similarity=0.577 Sum_probs=23.3
Q ss_pred CceeEEeCCCCCcHHHHHHHHHHHc
Q 035603 227 KRGYLLFGPPGTGKSTMIAAMANCL 251 (431)
Q Consensus 227 ~rg~LL~GPPGtGKTsla~aiA~~l 251 (431)
++++|+.||+|+|||++++++++++
T Consensus 132 ~~~ilI~G~tGSGKTTll~al~~~i 156 (299)
T TIGR02782 132 RKNILVVGGTGSGKTTLANALLAEI 156 (299)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHh
Confidence 5689999999999999999999887
No 385
>COG3265 GntK Gluconate kinase [Carbohydrate transport and metabolism]
Probab=96.61 E-value=0.0038 Score=54.80 Aligned_cols=39 Identities=26% Similarity=0.346 Sum_probs=31.9
Q ss_pred CCCCCcHHHHHHHHHHHcCCCeEEecccCcCChHHHHHHHH
Q 035603 234 GPPGTGKSTMIAAMANCLNYDVYDLELTSVENNNELRSLLV 274 (431)
Q Consensus 234 GPPGtGKTsla~aiA~~l~~~i~~l~~~~~~~~~~l~~l~~ 274 (431)
|..|||||+++.++|..+|+.|++ ..++...+++.++-.
T Consensus 2 GVsG~GKStvg~~lA~~lg~~fid--GDdlHp~aNi~KM~~ 40 (161)
T COG3265 2 GVSGSGKSTVGSALAERLGAKFID--GDDLHPPANIEKMSA 40 (161)
T ss_pred CCCccCHHHHHHHHHHHcCCceec--ccccCCHHHHHHHhC
Confidence 889999999999999999988774 556667777776643
No 386
>PF03266 NTPase_1: NTPase; InterPro: IPR004948 This entry represents a family of nucleoside-triphosphatases which have activity towards ATP, GTP, CTP, TTP and UTP and may hydrolyse nucleoside diphosphates with lower efficiency []. It includes proteins from bacteria to human, and the function was determined first in a hyperthermophilic bacterium to be an NTPase []. The structure of one member-sequence represents a variation of the RecA fold, and implies that the function might be that of a DNA/RNA modifying enzyme []. The sequence carries both a Walker A and Walker B motif which together are characteristic of ATPases or GTPases. The protein exhibits an increased expression profile in human liver cholangiocarcinoma when compared to normal tissue [].; GO: 0005524 ATP binding, 0016740 transferase activity, 0019204 nucleotide phosphatase activity; PDB: 1YE8_A 2I3B_A.
Probab=96.60 E-value=0.0016 Score=58.94 Aligned_cols=22 Identities=36% Similarity=0.782 Sum_probs=20.0
Q ss_pred eEEeCCCCCcHHHHHHHHHHHc
Q 035603 230 YLLFGPPGTGKSTMIAAMANCL 251 (431)
Q Consensus 230 ~LL~GPPGtGKTsla~aiA~~l 251 (431)
++|.|+||+||||+++.++..+
T Consensus 2 i~iTG~pG~GKTTll~k~i~~l 23 (168)
T PF03266_consen 2 IFITGPPGVGKTTLLKKVIEEL 23 (168)
T ss_dssp EEEES-TTSSHHHHHHHHHHHH
T ss_pred EEEECcCCCCHHHHHHHHHHHh
Confidence 7899999999999999999988
No 387
>PRK05800 cobU adenosylcobinamide kinase/adenosylcobinamide-phosphate guanylyltransferase; Validated
Probab=96.59 E-value=0.0036 Score=56.80 Aligned_cols=35 Identities=20% Similarity=0.184 Sum_probs=29.8
Q ss_pred eeEEeCCCCCcHHHHHHHHHHHcCCCeEEecccCc
Q 035603 229 GYLLFGPPGTGKSTMIAAMANCLNYDVYDLELTSV 263 (431)
Q Consensus 229 g~LL~GPPGtGKTsla~aiA~~l~~~i~~l~~~~~ 263 (431)
-+|+.||||+|||++|..+|..++.+++.+.....
T Consensus 3 ~ili~G~~~sGKS~~a~~l~~~~~~~~~~iat~~~ 37 (170)
T PRK05800 3 LILVTGGARSGKSRFAERLAAQSGLQVLYIATAQP 37 (170)
T ss_pred EEEEECCCCccHHHHHHHHHHHcCCCcEeCcCCCC
Confidence 47899999999999999999999888777665544
No 388
>PRK05973 replicative DNA helicase; Provisional
Probab=96.57 E-value=0.0029 Score=60.40 Aligned_cols=40 Identities=20% Similarity=0.006 Sum_probs=31.0
Q ss_pred CCCCCceeEEeCCCCCcHHHHHHHHHHHc---CCCeEEecccC
Q 035603 223 GKAWKRGYLLFGPPGTGKSTMIAAMANCL---NYDVYDLELTS 262 (431)
Q Consensus 223 g~~~~rg~LL~GPPGtGKTsla~aiA~~l---~~~i~~l~~~~ 262 (431)
|++...-+|+.|+||+|||+++-.+|.+. |.+++.+++..
T Consensus 60 Gl~~Gsl~LIaG~PG~GKT~lalqfa~~~a~~Ge~vlyfSlEe 102 (237)
T PRK05973 60 QLKPGDLVLLGARPGHGKTLLGLELAVEAMKSGRTGVFFTLEY 102 (237)
T ss_pred CCCCCCEEEEEeCCCCCHHHHHHHHHHHHHhcCCeEEEEEEeC
Confidence 67777789999999999999988776543 76766665544
No 389
>TIGR02238 recomb_DMC1 meiotic recombinase Dmc1. This model describes DMC1, a subfamily of a larger family of DNA repair and recombination proteins. It is eukaryotic only and most closely related to eukaryotic RAD51. It also resembles archaeal RadA (TIGR02236) and RadB (TIGR02237) and bacterial RecA (TIGR02012). It has been characterized for human as a recombinase active only in meiosis.
Probab=96.57 E-value=0.0067 Score=60.45 Aligned_cols=51 Identities=16% Similarity=0.131 Sum_probs=36.4
Q ss_pred CCCCCceeEEeCCCCCcHHHHHHHHHHH---------cCCCeEEecccCcCChHHHHHHH
Q 035603 223 GKAWKRGYLLFGPPGTGKSTMIAAMANC---------LNYDVYDLELTSVENNNELRSLL 273 (431)
Q Consensus 223 g~~~~rg~LL~GPPGtGKTsla~aiA~~---------l~~~i~~l~~~~~~~~~~l~~l~ 273 (431)
|++...-++++||||||||.|+..+|-. .+-.++.++...--..+.+.++.
T Consensus 92 Gi~~G~iteI~G~~GsGKTql~lqla~~~~~~~~~gg~~~~vvYIdtE~~f~~eRi~~~a 151 (313)
T TIGR02238 92 GIESMSITEVFGEFRCGKTQLSHTLCVTAQLPREMGGGNGKVAYIDTEGTFRPDRIRAIA 151 (313)
T ss_pred CCcCCeEEEEECCCCCCcCHHHHHHHHHHhcchhhcCCCCeEEEEEcCCCCCHHHHHHHH
Confidence 6888888899999999999999877742 23466667655433455565553
No 390
>PRK14730 coaE dephospho-CoA kinase; Provisional
Probab=96.56 E-value=0.0022 Score=59.44 Aligned_cols=32 Identities=25% Similarity=0.228 Sum_probs=28.3
Q ss_pred eeEEeCCCCCcHHHHHHHHHHHcCCCeEEecc
Q 035603 229 GYLLFGPPGTGKSTMIAAMANCLNYDVYDLEL 260 (431)
Q Consensus 229 g~LL~GPPGtGKTsla~aiA~~l~~~i~~l~~ 260 (431)
-+.++||||+|||++++.++..+|+++++.|.
T Consensus 3 ~i~itG~~gsGKst~~~~l~~~~g~~~i~~D~ 34 (195)
T PRK14730 3 RIGLTGGIASGKSTVGNYLAQQKGIPILDADI 34 (195)
T ss_pred EEEEECCCCCCHHHHHHHHHHhhCCeEeeCcH
Confidence 37899999999999999999988998887653
No 391
>PRK12337 2-phosphoglycerate kinase; Provisional
Probab=96.56 E-value=0.0059 Score=63.45 Aligned_cols=29 Identities=31% Similarity=0.338 Sum_probs=26.8
Q ss_pred CCceeEEeCCCCCcHHHHHHHHHHHcCCC
Q 035603 226 WKRGYLLFGPPGTGKSTMIAAMANCLNYD 254 (431)
Q Consensus 226 ~~rg~LL~GPPGtGKTsla~aiA~~l~~~ 254 (431)
.|.-++++|+||||||+++..+|..+++.
T Consensus 254 ~p~vil~~G~~G~GKSt~a~~LA~~lg~~ 282 (475)
T PRK12337 254 RPLHVLIGGVSGVGKSVLASALAYRLGIT 282 (475)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHcCCc
Confidence 46788999999999999999999999986
No 392
>TIGR02655 circ_KaiC circadian clock protein KaiC. Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor.
Probab=96.56 E-value=0.0047 Score=65.30 Aligned_cols=39 Identities=21% Similarity=0.222 Sum_probs=31.0
Q ss_pred CCCCCceeEEeCCCCCcHHHHHHHHHHH----cCCCeEEeccc
Q 035603 223 GKAWKRGYLLFGPPGTGKSTMIAAMANC----LNYDVYDLELT 261 (431)
Q Consensus 223 g~~~~rg~LL~GPPGtGKTsla~aiA~~----l~~~i~~l~~~ 261 (431)
|+|..+.+|+.||||||||+|+..++.+ .|-+.+.++..
T Consensus 17 Glp~g~~~Li~G~pGsGKT~la~qfl~~g~~~~ge~~lyvs~e 59 (484)
T TIGR02655 17 GLPIGRSTLVSGTSGTGKTLFSIQFLYNGIIHFDEPGVFVTFE 59 (484)
T ss_pred CCCCCeEEEEEcCCCCCHHHHHHHHHHHHHHhCCCCEEEEEEe
Confidence 7888999999999999999999987432 25676666553
No 393
>PRK05439 pantothenate kinase; Provisional
Probab=96.55 E-value=0.021 Score=56.69 Aligned_cols=37 Identities=19% Similarity=0.046 Sum_probs=27.4
Q ss_pred CceeEEeCCCCCcHHHHHHHHHHHcC-----CCeEEecccCc
Q 035603 227 KRGYLLFGPPGTGKSTMIAAMANCLN-----YDVYDLELTSV 263 (431)
Q Consensus 227 ~rg~LL~GPPGtGKTsla~aiA~~l~-----~~i~~l~~~~~ 263 (431)
+.-+.+.||||+||||+|+.|+..++ ..+..+...+.
T Consensus 86 ~~iIgIaG~~gsGKSTla~~L~~~l~~~~~~~~v~vi~~DdF 127 (311)
T PRK05439 86 PFIIGIAGSVAVGKSTTARLLQALLSRWPEHPKVELVTTDGF 127 (311)
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHHHhhCCCCceEEEecccc
Confidence 34567899999999999999998764 23555555444
No 394
>KOG2228 consensus Origin recognition complex, subunit 4 [Replication, recombination and repair]
Probab=96.54 E-value=0.022 Score=56.55 Aligned_cols=144 Identities=17% Similarity=0.176 Sum_probs=80.5
Q ss_pred cccChhhHHHHHHHHHHHHhCHHHHHHhCCCCCceeEEeCCCCCcHHHHHH-HHH--HHcCCCeEEecccCc-CC-hHHH
Q 035603 195 LAMASKKKEAIKKDLIKFTEGKEYYAKIGKAWKRGYLLFGPPGTGKSTMIA-AMA--NCLNYDVYDLELTSV-EN-NNEL 269 (431)
Q Consensus 195 l~g~~~~k~~i~~~l~~~~~~~~~~~~~g~~~~rg~LL~GPPGtGKTsla~-aiA--~~l~~~i~~l~~~~~-~~-~~~l 269 (431)
+.|..+..+.|.+.++.-.-.. -...+++.||.|+|||.++. .++ .+.|-+++.+.+... .+ .-.+
T Consensus 26 l~g~~~~~~~l~~~lkqt~~~g---------EsnsviiigprgsgkT~li~~~Ls~~q~~~E~~l~v~Lng~~~~dk~al 96 (408)
T KOG2228|consen 26 LFGVQDEQKHLSELLKQTILHG---------ESNSVIIIGPRGSGKTILIDTRLSDIQENGENFLLVRLNGELQTDKIAL 96 (408)
T ss_pred eeehHHHHHHHHHHHHHHHHhc---------CCCceEEEccCCCCceEeeHHHHhhHHhcCCeEEEEEECccchhhHHHH
Confidence 3455555666655554443321 24689999999999999766 333 477888877766543 22 1122
Q ss_pred HHHHHHhhhc-------ccchhhHHHHHH----------------------------------HHhcCcccCCCCceEEE
Q 035603 270 RSLLVDISSK-------KKKSNVTLSGLL----------------------------------NCIGGLWSTCGGERIIV 308 (431)
Q Consensus 270 ~~l~~~~~~~-------~~~~~~~~s~lL----------------------------------~~ldg~~~~~~~~~ivI 308 (431)
+.+-.+.... ......+++.|| |.+|-..++ ..++-||
T Consensus 97 ~~I~rql~~e~~~~~k~~gsfte~l~~lL~~L~~~~~~t~~~ViFIldEfDlf~~h~rQtllYnlfDisqs~-r~Picii 175 (408)
T KOG2228|consen 97 KGITRQLALELNRIVKSFGSFTENLSKLLEALKKGDETTSGKVIFILDEFDLFAPHSRQTLLYNLFDISQSA-RAPICII 175 (408)
T ss_pred HHHHHHHHHHHhhhheeecccchhHHHHHHHHhcCCCCCCceEEEEeehhhccccchhhHHHHHHHHHHhhc-CCCeEEE
Confidence 2222111100 111122233333 333333222 2346677
Q ss_pred EecCCCCC---CChhhhccCceeEE-EEcCCC-CHHHHHHHHHHhhc
Q 035603 309 FTTNHVDK---LDPALIRRGRMDKH-IEMPYC-CFEAFKVLAKNYLE 350 (431)
Q Consensus 309 ~TTN~~~~---Ld~AllRpGRfd~~-I~~~~p-~~~~r~~i~~~~l~ 350 (431)
+.|.+.+. |..-+.. ||... |+|+++ ..++..++++..+.
T Consensus 176 g~Ttrld~lE~LEKRVKS--RFshr~I~m~~~~~l~~yv~l~r~ll~ 220 (408)
T KOG2228|consen 176 GVTTRLDILELLEKRVKS--RFSHRVIFMLPSLPLGDYVDLYRKLLS 220 (408)
T ss_pred EeeccccHHHHHHHHHHh--hcccceeeccCCCChHHHHHHHHHHhc
Confidence 77766554 4566666 88655 777665 57888889888874
No 395
>COG4088 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=96.53 E-value=0.0012 Score=61.05 Aligned_cols=28 Identities=32% Similarity=0.577 Sum_probs=24.0
Q ss_pred eeEEeCCCCCcHHHHHHHHHHHcCCCeE
Q 035603 229 GYLLFGPPGTGKSTMIAAMANCLNYDVY 256 (431)
Q Consensus 229 g~LL~GPPGtGKTsla~aiA~~l~~~i~ 256 (431)
=++|.|+||+|||++++-+|++|.-.+.
T Consensus 3 LiIlTGyPgsGKTtfakeLak~L~~~i~ 30 (261)
T COG4088 3 LIILTGYPGSGKTTFAKELAKELRQEIW 30 (261)
T ss_pred eEEEecCCCCCchHHHHHHHHHHHHhhh
Confidence 3789999999999999999999865443
No 396
>PRK11545 gntK gluconate kinase 1; Provisional
Probab=96.53 E-value=0.0019 Score=58.12 Aligned_cols=27 Identities=30% Similarity=0.470 Sum_probs=23.3
Q ss_pred eCCCCCcHHHHHHHHHHHcCCCeEEec
Q 035603 233 FGPPGTGKSTMIAAMANCLNYDVYDLE 259 (431)
Q Consensus 233 ~GPPGtGKTsla~aiA~~l~~~i~~l~ 259 (431)
.||||||||++++++|..++..+++-+
T Consensus 1 ~G~sGsGKSTla~~la~~l~~~~~~~d 27 (163)
T PRK11545 1 MGVSGSGKSAVASEVAHQLHAAFLDGD 27 (163)
T ss_pred CCCCCCcHHHHHHHHHHHhCCeEEeCc
Confidence 399999999999999999997666554
No 397
>PRK13975 thymidylate kinase; Provisional
Probab=96.53 E-value=0.0036 Score=57.50 Aligned_cols=27 Identities=30% Similarity=0.284 Sum_probs=24.1
Q ss_pred ceeEEeCCCCCcHHHHHHHHHHHcCCC
Q 035603 228 RGYLLFGPPGTGKSTMIAAMANCLNYD 254 (431)
Q Consensus 228 rg~LL~GPPGtGKTsla~aiA~~l~~~ 254 (431)
+-+.|.||+|+||||+++.+|..++..
T Consensus 3 ~~I~ieG~~GsGKtT~~~~L~~~l~~~ 29 (196)
T PRK13975 3 KFIVFEGIDGSGKTTQAKLLAEKLNAF 29 (196)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhCCC
Confidence 347899999999999999999999864
No 398
>PTZ00301 uridine kinase; Provisional
Probab=96.49 E-value=0.053 Score=50.89 Aligned_cols=22 Identities=27% Similarity=0.449 Sum_probs=19.8
Q ss_pred eEEeCCCCCcHHHHHHHHHHHc
Q 035603 230 YLLFGPPGTGKSTMIAAMANCL 251 (431)
Q Consensus 230 ~LL~GPPGtGKTsla~aiA~~l 251 (431)
+.+.||||+||||+|+.|+..+
T Consensus 6 IgIaG~SgSGKTTla~~l~~~l 27 (210)
T PTZ00301 6 IGISGASGSGKSSLSTNIVSEL 27 (210)
T ss_pred EEEECCCcCCHHHHHHHHHHHH
Confidence 5688999999999999998876
No 399
>PLN03187 meiotic recombination protein DMC1 homolog; Provisional
Probab=96.48 E-value=0.0085 Score=60.39 Aligned_cols=51 Identities=14% Similarity=0.116 Sum_probs=36.4
Q ss_pred CCCCCceeEEeCCCCCcHHHHHHHHHHHc---------CCCeEEecccCcCChHHHHHHH
Q 035603 223 GKAWKRGYLLFGPPGTGKSTMIAAMANCL---------NYDVYDLELTSVENNNELRSLL 273 (431)
Q Consensus 223 g~~~~rg~LL~GPPGtGKTsla~aiA~~l---------~~~i~~l~~~~~~~~~~l~~l~ 273 (431)
|++...-+.++||||||||+|+..+|-.. +-.++.++...--..+.+.++.
T Consensus 122 Gi~~G~ItEI~G~~GsGKTql~lqlav~~qlp~~~gg~~~~vvyIdTE~tF~peRl~~ia 181 (344)
T PLN03187 122 GIETRCITEAFGEFRSGKTQLAHTLCVTTQLPTEMGGGNGKVAYIDTEGTFRPDRIVPIA 181 (344)
T ss_pred CCCCCeEEEEecCCCCChhHHHHHHHHHHhcchhhCCCCceEEEEEcCCCCCHHHHHHHH
Confidence 67877788999999999999999887422 2456666665533455665554
No 400
>COG3604 FhlA Transcriptional regulator containing GAF, AAA-type ATPase, and DNA binding domains [Transcription / Signal transduction mechanisms]
Probab=96.48 E-value=0.013 Score=60.81 Aligned_cols=64 Identities=16% Similarity=0.180 Sum_probs=54.1
Q ss_pred CCCccccccChhhHHHHHHHHHHHHhCHHHHHHhCCCCCceeEEeCCCCCcHHHHHHHHHHHc---CCCeEEecccCc
Q 035603 189 PATFDTLAMASKKKEAIKKDLIKFTEGKEYYAKIGKAWKRGYLLFGPPGTGKSTMIAAMANCL---NYDVYDLELTSV 263 (431)
Q Consensus 189 p~~f~~l~g~~~~k~~i~~~l~~~~~~~~~~~~~g~~~~rg~LL~GPPGtGKTsla~aiA~~l---~~~i~~l~~~~~ 263 (431)
...+..|+|......++.+.+..-..+ .-.+||.|..||||..+|++|-... +.+|+.+||..+
T Consensus 219 ~~~~~~iIG~S~am~~ll~~i~~VA~S-----------d~tVLi~GETGtGKElvAraIH~~S~R~~kPfV~~NCAAl 285 (550)
T COG3604 219 VLEVGGIIGRSPAMRQLLKEIEVVAKS-----------DSTVLIRGETGTGKELVARAIHQLSPRRDKPFVKLNCAAL 285 (550)
T ss_pred hcccccceecCHHHHHHHHHHHHHhcC-----------CCeEEEecCCCccHHHHHHHHHhhCcccCCCceeeecccc
Confidence 356889999999999998888665543 3579999999999999999998866 468999999987
No 401
>PRK08533 flagellar accessory protein FlaH; Reviewed
Probab=96.47 E-value=0.0057 Score=58.20 Aligned_cols=37 Identities=27% Similarity=0.279 Sum_probs=27.4
Q ss_pred CCCCCceeEEeCCCCCcHHHHHHHHHHHc---CCCeEEec
Q 035603 223 GKAWKRGYLLFGPPGTGKSTMIAAMANCL---NYDVYDLE 259 (431)
Q Consensus 223 g~~~~rg~LL~GPPGtGKTsla~aiA~~l---~~~i~~l~ 259 (431)
|++...-+++.||||||||+++..++..+ |..++.++
T Consensus 20 gi~~g~~~~i~G~~G~GKTtl~~~~~~~~~~~g~~~~yi~ 59 (230)
T PRK08533 20 GIPAGSLILIEGDESTGKSILSQRLAYGFLQNGYSVSYVS 59 (230)
T ss_pred CCCCCcEEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEEe
Confidence 57777889999999999999975554433 45555555
No 402
>cd00544 CobU Adenosylcobinamide kinase / adenosylcobinamide phosphate guanyltransferase (CobU). CobU is bifunctional cobalbumin biosynthesis enzymes which display adenosylcobinamide kinase and adenosylcobinamide phosphate guanyltransferase activity. This enzyme is a homotrimer with a propeller-like shape.
Probab=96.45 E-value=0.0066 Score=55.01 Aligned_cols=43 Identities=21% Similarity=0.238 Sum_probs=32.0
Q ss_pred eEEeCCCCCcHHHHHHHHHHHcCCCeEEecccCcCChHHHHHHH
Q 035603 230 YLLFGPPGTGKSTMIAAMANCLNYDVYDLELTSVENNNELRSLL 273 (431)
Q Consensus 230 ~LL~GPPGtGKTsla~aiA~~l~~~i~~l~~~~~~~~~~l~~l~ 273 (431)
+|+.||||+|||++|..+|...+.+++.+...... ..++++.+
T Consensus 2 ~li~G~~~sGKS~~a~~~~~~~~~~~~y~at~~~~-d~em~~rI 44 (169)
T cd00544 2 ILVTGGARSGKSRFAERLAAELGGPVTYIATAEAF-DDEMAERI 44 (169)
T ss_pred EEEECCCCCCHHHHHHHHHHhcCCCeEEEEccCcC-CHHHHHHH
Confidence 68999999999999999998877777777555432 33444443
No 403
>PTZ00035 Rad51 protein; Provisional
Probab=96.44 E-value=0.013 Score=59.08 Aligned_cols=51 Identities=16% Similarity=0.126 Sum_probs=35.8
Q ss_pred CCCCCceeEEeCCCCCcHHHHHHHHHHHcC---------CCeEEecccCcCChHHHHHHH
Q 035603 223 GKAWKRGYLLFGPPGTGKSTMIAAMANCLN---------YDVYDLELTSVENNNELRSLL 273 (431)
Q Consensus 223 g~~~~rg~LL~GPPGtGKTsla~aiA~~l~---------~~i~~l~~~~~~~~~~l~~l~ 273 (431)
|++...-+.++||||||||+|+..+|.... -.++.++....-..+.+..+.
T Consensus 114 Gi~~G~iteI~G~~GsGKT~l~~~l~~~~qlp~~~gg~~g~vvyIdtE~~f~~eri~~ia 173 (337)
T PTZ00035 114 GIETGSITELFGEFRTGKTQLCHTLCVTCQLPIEQGGGEGKVLYIDTEGTFRPERIVQIA 173 (337)
T ss_pred CCCCCeEEEEECCCCCchhHHHHHHHHHhccccccCCCCceEEEEEccCCCCHHHHHHHH
Confidence 677777889999999999999998875433 345556554433445555554
No 404
>PRK00091 miaA tRNA delta(2)-isopentenylpyrophosphate transferase; Reviewed
Probab=96.42 E-value=0.0033 Score=62.40 Aligned_cols=35 Identities=20% Similarity=0.422 Sum_probs=30.3
Q ss_pred CceeEEeCCCCCcHHHHHHHHHHHcCCCeEEeccc
Q 035603 227 KRGYLLFGPPGTGKSTMIAAMANCLNYDVYDLELT 261 (431)
Q Consensus 227 ~rg~LL~GPPGtGKTsla~aiA~~l~~~i~~l~~~ 261 (431)
++-+++.||+|||||++|..||.+++..++..|..
T Consensus 4 ~~~i~i~GptgsGKt~la~~la~~~~~~iis~Ds~ 38 (307)
T PRK00091 4 PKVIVIVGPTASGKTALAIELAKRLNGEIISADSM 38 (307)
T ss_pred ceEEEEECCCCcCHHHHHHHHHHhCCCcEEecccc
Confidence 35688999999999999999999999888776653
No 405
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=96.42 E-value=0.0036 Score=56.42 Aligned_cols=34 Identities=32% Similarity=0.368 Sum_probs=27.4
Q ss_pred eEEeCCCCCcHHHHHHHHHHHc---CCCeEEecccCc
Q 035603 230 YLLFGPPGTGKSTMIAAMANCL---NYDVYDLELTSV 263 (431)
Q Consensus 230 ~LL~GPPGtGKTsla~aiA~~l---~~~i~~l~~~~~ 263 (431)
+++.||||+|||++++.+|..+ +..+..+++...
T Consensus 3 ~~~~G~~G~GKTt~~~~la~~~~~~g~~v~~i~~D~~ 39 (173)
T cd03115 3 ILLVGLQGVGKTTTAAKLALYLKKKGKKVLLVAADTY 39 (173)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHCCCcEEEEEcCCC
Confidence 6889999999999999998765 666776665543
No 406
>PRK09354 recA recombinase A; Provisional
Probab=96.41 E-value=0.0053 Score=61.79 Aligned_cols=40 Identities=18% Similarity=0.199 Sum_probs=31.0
Q ss_pred CCCCCceeEEeCCCCCcHHHHHHHHHH---HcCCCeEEecccC
Q 035603 223 GKAWKRGYLLFGPPGTGKSTMIAAMAN---CLNYDVYDLELTS 262 (431)
Q Consensus 223 g~~~~rg~LL~GPPGtGKTsla~aiA~---~l~~~i~~l~~~~ 262 (431)
|+|..+-+++|||||||||+|+-.++. ..|-..+.++...
T Consensus 56 Gip~G~IteI~G~~GsGKTtLal~~~~~~~~~G~~~~yId~E~ 98 (349)
T PRK09354 56 GLPRGRIVEIYGPESSGKTTLALHAIAEAQKAGGTAAFIDAEH 98 (349)
T ss_pred CCcCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEECCcc
Confidence 677778899999999999999987654 3466666666654
No 407
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=96.41 E-value=0.0039 Score=62.27 Aligned_cols=60 Identities=25% Similarity=0.237 Sum_probs=37.0
Q ss_pred hhHHHHHHHHHHHHhC-HHHHHHhCCCCCceeEEeCCCCCcHHHHHHHHHHHc---CCCeEEecc
Q 035603 200 KKKEAIKKDLIKFTEG-KEYYAKIGKAWKRGYLLFGPPGTGKSTMIAAMANCL---NYDVYDLEL 260 (431)
Q Consensus 200 ~~k~~i~~~l~~~~~~-~~~~~~~g~~~~rg~LL~GPPGtGKTsla~aiA~~l---~~~i~~l~~ 260 (431)
.+++.+.+.+...+.. ...+. .....+.-++|.||||+||||++..||..+ +..+..++.
T Consensus 87 ~~~~~l~~~l~~~l~~~~~~~~-~~~~~~~vi~lvGpnGsGKTTt~~kLA~~l~~~g~~V~Li~~ 150 (318)
T PRK10416 87 ELKELLKEELAEILEPVEKPLN-IEEKKPFVILVVGVNGVGKTTTIGKLAHKYKAQGKKVLLAAG 150 (318)
T ss_pred HHHHHHHHHHHHHhCcCCcccc-ccCCCCeEEEEECCCCCcHHHHHHHHHHHHHhcCCeEEEEec
Confidence 3455555555555541 11111 112235668899999999999999999876 445554443
No 408
>PRK00300 gmk guanylate kinase; Provisional
Probab=96.41 E-value=0.0031 Score=58.36 Aligned_cols=27 Identities=33% Similarity=0.404 Sum_probs=24.2
Q ss_pred CCceeEEeCCCCCcHHHHHHHHHHHcC
Q 035603 226 WKRGYLLFGPPGTGKSTMIAAMANCLN 252 (431)
Q Consensus 226 ~~rg~LL~GPPGtGKTsla~aiA~~l~ 252 (431)
.+.-+.|.||+|+|||+|++.|++.++
T Consensus 4 ~g~~i~i~G~sGsGKstl~~~l~~~~~ 30 (205)
T PRK00300 4 RGLLIVLSGPSGAGKSTLVKALLERDP 30 (205)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhCc
Confidence 456789999999999999999999876
No 409
>TIGR03499 FlhF flagellar biosynthetic protein FlhF.
Probab=96.40 E-value=0.0055 Score=60.15 Aligned_cols=36 Identities=28% Similarity=0.365 Sum_probs=28.1
Q ss_pred CceeEEeCCCCCcHHHHHHHHHHHc----C-CCeEEecccC
Q 035603 227 KRGYLLFGPPGTGKSTMIAAMANCL----N-YDVYDLELTS 262 (431)
Q Consensus 227 ~rg~LL~GPPGtGKTsla~aiA~~l----~-~~i~~l~~~~ 262 (431)
++.++|.||+|+|||+++..+|..+ | ..+..++...
T Consensus 194 ~~vi~~vGptGvGKTTt~~kLa~~~~~~~g~~~V~li~~D~ 234 (282)
T TIGR03499 194 GGVIALVGPTGVGKTTTLAKLAARFVLEHGNKKVALITTDT 234 (282)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHHcCCCeEEEEECCc
Confidence 4568899999999999999999866 3 5666665544
No 410
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Probab=96.38 E-value=0.004 Score=57.06 Aligned_cols=26 Identities=27% Similarity=0.593 Sum_probs=23.6
Q ss_pred CceeEEeCCCCCcHHHHHHHHHHHcC
Q 035603 227 KRGYLLFGPPGTGKSTMIAAMANCLN 252 (431)
Q Consensus 227 ~rg~LL~GPPGtGKTsla~aiA~~l~ 252 (431)
+..+++.||+|+|||++++++++.+.
T Consensus 25 g~~i~I~G~tGSGKTTll~aL~~~i~ 50 (186)
T cd01130 25 RKNILISGGTGSGKTTLLNALLAFIP 50 (186)
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhcC
Confidence 56799999999999999999999775
No 411
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=96.38 E-value=0.006 Score=63.07 Aligned_cols=62 Identities=18% Similarity=0.244 Sum_probs=39.7
Q ss_pred hhHHHHHHHHHHHHhCH-HHHHHhCCCCCceeEEeCCCCCcHHHHHHHHHHHc---CCCeEEecccC
Q 035603 200 KKKEAIKKDLIKFTEGK-EYYAKIGKAWKRGYLLFGPPGTGKSTMIAAMANCL---NYDVYDLELTS 262 (431)
Q Consensus 200 ~~k~~i~~~l~~~~~~~-~~~~~~g~~~~rg~LL~GPPGtGKTsla~aiA~~l---~~~i~~l~~~~ 262 (431)
.+++.+.+.+...+... ..+. .....+.-++|.||+|+||||++..+|..+ |..+..+++..
T Consensus 73 ~v~~~v~~~L~~~l~~~~~~~~-~~~~~~~vi~lvG~~GvGKTTtaaKLA~~l~~~G~kV~lV~~D~ 138 (429)
T TIGR01425 73 MIQHAVFKELCNLVDPGVEAFT-PKKGKQNVIMFVGLQGSGKTTTCTKLAYYYQRKGFKPCLVCADT 138 (429)
T ss_pred HHHHHHHHHHHHHhCCCCcccc-ccCCCCeEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEcCcc
Confidence 45566666666655421 1111 111224678999999999999999999876 66666665543
No 412
>PRK00081 coaE dephospho-CoA kinase; Reviewed
Probab=96.38 E-value=0.0035 Score=57.95 Aligned_cols=31 Identities=35% Similarity=0.330 Sum_probs=27.7
Q ss_pred eeEEeCCCCCcHHHHHHHHHHHcCCCeEEecc
Q 035603 229 GYLLFGPPGTGKSTMIAAMANCLNYDVYDLEL 260 (431)
Q Consensus 229 g~LL~GPPGtGKTsla~aiA~~l~~~i~~l~~ 260 (431)
-+.|+|++|||||++++.++. +|+++++.|.
T Consensus 4 ~i~ltG~~gsGKst~~~~l~~-~g~~~i~~D~ 34 (194)
T PRK00081 4 IIGLTGGIGSGKSTVANLFAE-LGAPVIDADA 34 (194)
T ss_pred EEEEECCCCCCHHHHHHHHHH-cCCEEEEecH
Confidence 588999999999999999998 8988887764
No 413
>cd00984 DnaB_C DnaB helicase C terminal domain. The hexameric helicase DnaB unwinds the DNA duplex at the chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis.
Probab=96.37 E-value=0.0048 Score=58.63 Aligned_cols=40 Identities=18% Similarity=0.188 Sum_probs=32.8
Q ss_pred CCCCCceeEEeCCCCCcHHHHHHHHHHHc----CCCeEEecccC
Q 035603 223 GKAWKRGYLLFGPPGTGKSTMIAAMANCL----NYDVYDLELTS 262 (431)
Q Consensus 223 g~~~~rg~LL~GPPGtGKTsla~aiA~~l----~~~i~~l~~~~ 262 (431)
|+++..-++|.||||+|||+++..+|... +.+++.+++..
T Consensus 9 Gl~~G~l~lI~G~~G~GKT~~~~~~~~~~~~~~g~~vly~s~E~ 52 (242)
T cd00984 9 GLQPGDLIIIAARPSMGKTAFALNIAENIAKKQGKPVLFFSLEM 52 (242)
T ss_pred CCCCCeEEEEEeCCCCCHHHHHHHHHHHHHHhCCCceEEEeCCC
Confidence 77877889999999999999998887643 77877777655
No 414
>PRK06581 DNA polymerase III subunit delta'; Validated
Probab=96.37 E-value=0.072 Score=50.86 Aligned_cols=117 Identities=11% Similarity=0.067 Sum_probs=82.5
Q ss_pred CceeEEeCCCC-CcHHHHHHHHHHHcCC---------CeEEecccC-------cCChHHHHHHHHHhhhc----------
Q 035603 227 KRGYLLFGPPG-TGKSTMIAAMANCLNY---------DVYDLELTS-------VENNNELRSLLVDISSK---------- 279 (431)
Q Consensus 227 ~rg~LL~GPPG-tGKTsla~aiA~~l~~---------~i~~l~~~~-------~~~~~~l~~l~~~~~~~---------- 279 (431)
...|||.|..+ +||.-++.-++..+.+ +++.+.... .-+.+.+|++.......
T Consensus 15 shAYLfeG~n~~~~~~~~~~f~~~~l~~~~i~~~~HPD~~~I~pe~~~~~~~~~I~IdqIReL~~~l~~~p~~g~~KViI 94 (263)
T PRK06581 15 YNSWLIEAENIEQALKDLEKFIYIKLFKNSIPLENNPDYHFIARETSATSNAKNISIEQIRKLQDFLSKTSAISGYKVAI 94 (263)
T ss_pred hheeeEeCCChhhHHHHHHHHHHHHHhccCcccCCCCCEEEEeccccccccCCcccHHHHHHHHHHHhhCcccCCcEEEE
Confidence 35899999998 9999998888876633 455554321 11345667665444322
Q ss_pred ----ccchhhHHHHHHHHhcCcccCCCCceEEEEecCCCCCCChhhhccCceeEEEEcCCCCHHHHHHHHHHhhc
Q 035603 280 ----KKKSNVTLSGLLNCIGGLWSTCGGERIIVFTTNHVDKLDPALIRRGRMDKHIEMPYCCFEAFKVLAKNYLE 350 (431)
Q Consensus 280 ----~~~~~~~~s~lL~~ldg~~~~~~~~~ivI~TTN~~~~Ld~AllRpGRfd~~I~~~~p~~~~r~~i~~~~l~ 350 (431)
+.-.....+.||..++. ++...++|.+|+.++.|.|.+++ |. ..+.++.|....-.++...++.
T Consensus 95 I~~ae~mt~~AANALLKtLEE----PP~~t~fILit~~~~~LLpTIrS--RC-q~i~~~~p~~~~~~e~~~~~~~ 162 (263)
T PRK06581 95 IYSAELMNLNAANSCLKILED----APKNSYIFLITSRAASIISTIRS--RC-FKINVRSSILHAYNELYSQFIQ 162 (263)
T ss_pred EechHHhCHHHHHHHHHhhcC----CCCCeEEEEEeCChhhCchhHhh--ce-EEEeCCCCCHHHHHHHHHHhcc
Confidence 33345678889999884 45668999999999999999998 44 6788998888776666665554
No 415
>PRK13951 bifunctional shikimate kinase/3-dehydroquinate synthase; Provisional
Probab=96.36 E-value=0.0032 Score=66.49 Aligned_cols=32 Identities=28% Similarity=0.452 Sum_probs=29.3
Q ss_pred eeEEeCCCCCcHHHHHHHHHHHcCCCeEEecc
Q 035603 229 GYLLFGPPGTGKSTMIAAMANCLNYDVYDLEL 260 (431)
Q Consensus 229 g~LL~GPPGtGKTsla~aiA~~l~~~i~~l~~ 260 (431)
.+.|.|+||||||++++.+|..+++++++.|.
T Consensus 2 ~I~l~G~~GsGKSTv~~~La~~lg~~~id~D~ 33 (488)
T PRK13951 2 RIFLVGMMGSGKSTIGKRVSEVLDLQFIDMDE 33 (488)
T ss_pred eEEEECCCCCCHHHHHHHHHHHcCCeEEECcH
Confidence 37899999999999999999999999998764
No 416
>COG3283 TyrR Transcriptional regulator of aromatic amino acids metabolism [Transcription / Amino acid transport and metabolism]
Probab=96.36 E-value=0.021 Score=57.02 Aligned_cols=123 Identities=17% Similarity=0.208 Sum_probs=83.4
Q ss_pred ceeeeccCCCCccccccChhhHHHHHHHHHHHHhCHHHHHHhCCCCCceeEEeCCCCCcHHHHHHHHHHHc---CCCeEE
Q 035603 181 WSHVYFEHPATFDTLAMASKKKEAIKKDLIKFTEGKEYYAKIGKAWKRGYLLFGPPGTGKSTMIAAMANCL---NYDVYD 257 (431)
Q Consensus 181 w~~~~~~~p~~f~~l~g~~~~k~~i~~~l~~~~~~~~~~~~~g~~~~rg~LL~GPPGtGKTsla~aiA~~l---~~~i~~ 257 (431)
-..+.+.+-..|+.+++.....+.+.+....+-. ..-.+|+.|..||||-.+|+|.-... ..+|+.
T Consensus 192 ~~~~~~~~~~~F~~~v~~S~~mk~~v~qA~k~Am-----------lDAPLLI~GeTGTGKdLlAkaCH~~S~R~~~pFla 260 (511)
T COG3283 192 LQNVAAQDVSGFEQIVAVSPKMKHVVEQAQKLAM-----------LDAPLLITGETGTGKDLLAKACHLASPRHSKPFLA 260 (511)
T ss_pred HhhcccccccchHHHhhccHHHHHHHHHHHHhhc-----------cCCCeEEecCCCchHHHHHHHHhhcCcccCCCeeE
Confidence 3445666778899999998887777765544432 22458999999999999999876543 568999
Q ss_pred ecccCcCChHHHHHHHHHhhhc--------------------ccchhhHHHHHHHHh-cCcccCCCC------ceEEEEe
Q 035603 258 LELTSVENNNELRSLLVDISSK--------------------KKKSNVTLSGLLNCI-GGLWSTCGG------ERIIVFT 310 (431)
Q Consensus 258 l~~~~~~~~~~l~~l~~~~~~~--------------------~~~~~~~~s~lL~~l-dg~~~~~~~------~~ivI~T 310 (431)
+||.++-.+..=.++|..+... ...+......||.++ ||....-|+ ++=||+|
T Consensus 261 lNCA~lPe~~aEsElFG~apg~~gk~GffE~AngGTVlLDeIgEmSp~lQaKLLRFL~DGtFRRVGee~Ev~vdVRVIca 340 (511)
T COG3283 261 LNCASLPEDAAESELFGHAPGDEGKKGFFEQANGGTVLLDEIGEMSPRLQAKLLRFLNDGTFRRVGEDHEVHVDVRVICA 340 (511)
T ss_pred eecCCCchhHhHHHHhcCCCCCCCccchhhhccCCeEEeehhhhcCHHHHHHHHHHhcCCceeecCCcceEEEEEEEEec
Confidence 9999985554445666655532 233455566788877 454333332 3568888
Q ss_pred cCCC
Q 035603 311 TNHV 314 (431)
Q Consensus 311 TN~~ 314 (431)
|..+
T Consensus 341 tq~n 344 (511)
T COG3283 341 TQVN 344 (511)
T ss_pred cccc
Confidence 8653
No 417
>TIGR01613 primase_Cterm phage/plasmid primase, P4 family, C-terminal domain. This model represents a clade within a larger family of proteins from viruses of bacteria and animals. Members of this family are found in phage and plasmids of bacteria and archaea only. The model describes a domain of about 300 residues, found generally toward the protein C-terminus.
Probab=96.36 E-value=0.013 Score=58.07 Aligned_cols=56 Identities=20% Similarity=0.181 Sum_probs=38.1
Q ss_pred ccccc-ChhhHHHHHHHHHHHHhCHHHHHHhCCCCCceeEEeCCCCCcHHHHHHHHHHHcCCCe
Q 035603 193 DTLAM-ASKKKEAIKKDLIKFTEGKEYYAKIGKAWKRGYLLFGPPGTGKSTMIAAMANCLNYDV 255 (431)
Q Consensus 193 ~~l~g-~~~~k~~i~~~l~~~~~~~~~~~~~g~~~~rg~LL~GPPGtGKTsla~aiA~~l~~~i 255 (431)
+++.. ++++++-+.+.+-.-+.. ..+..+.++|+|+.|+|||++...|..-+|-..
T Consensus 48 ~~~~~~d~~~~~~l~~~lg~~L~~-------~~~~~~~~~l~G~g~nGKStl~~~l~~l~G~~~ 104 (304)
T TIGR01613 48 LETFGGDNELIEYLQRVIGYSLTG-------NYTEQKLFFLYGNGGNGKSTFQNLLSNLLGDYA 104 (304)
T ss_pred HHHhCCCHHHHHHHHHHHhHHhcC-------CCCceEEEEEECCCCCcHHHHHHHHHHHhChhh
Confidence 44433 445555555544433332 145567899999999999999999999888543
No 418
>TIGR02524 dot_icm_DotB Dot/Icm secretion system ATPase DotB. Members of this protein family are the DotB component of Dot/Icm secretion systems, as found in obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii. While this system resembles type IV secretion systems and has been called a form of type IV, the liturature now seems to favor calling this the Dot/Icm system. This family is most closely related to TraJ proteins of plasmid transfer, rather than to proteins of other type IV secretion systems.
Probab=96.36 E-value=0.0058 Score=62.01 Aligned_cols=24 Identities=38% Similarity=0.542 Sum_probs=21.7
Q ss_pred ceeEEeCCCCCcHHHHHHHHHHHc
Q 035603 228 RGYLLFGPPGTGKSTMIAAMANCL 251 (431)
Q Consensus 228 rg~LL~GPPGtGKTsla~aiA~~l 251 (431)
.-+++.||+|+||||+++++++++
T Consensus 135 glilI~GpTGSGKTTtL~aLl~~i 158 (358)
T TIGR02524 135 GIVFITGATGSGKSTLLAAIIREL 158 (358)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHH
Confidence 457899999999999999999886
No 419
>PRK08356 hypothetical protein; Provisional
Probab=96.36 E-value=0.0036 Score=57.81 Aligned_cols=27 Identities=15% Similarity=0.052 Sum_probs=22.6
Q ss_pred eeEEeCCCCCcHHHHHHHHHHHcCCCeE
Q 035603 229 GYLLFGPPGTGKSTMIAAMANCLNYDVY 256 (431)
Q Consensus 229 g~LL~GPPGtGKTsla~aiA~~l~~~i~ 256 (431)
-++|.||||+||||+|+.|+ +.|+..+
T Consensus 7 ~i~~~G~~gsGK~t~a~~l~-~~g~~~i 33 (195)
T PRK08356 7 IVGVVGKIAAGKTTVAKFFE-EKGFCRV 33 (195)
T ss_pred EEEEECCCCCCHHHHHHHHH-HCCCcEE
Confidence 47899999999999999996 4677643
No 420
>PRK06761 hypothetical protein; Provisional
Probab=96.35 E-value=0.0035 Score=61.34 Aligned_cols=33 Identities=30% Similarity=0.452 Sum_probs=27.3
Q ss_pred ceeEEeCCCCCcHHHHHHHHHHHcCCCeEEecc
Q 035603 228 RGYLLFGPPGTGKSTMIAAMANCLNYDVYDLEL 260 (431)
Q Consensus 228 rg~LL~GPPGtGKTsla~aiA~~l~~~i~~l~~ 260 (431)
+-+++.||||+||||+++.++..++...+.++.
T Consensus 4 ~lIvI~G~~GsGKTTla~~L~~~L~~~g~~v~~ 36 (282)
T PRK06761 4 KLIIIEGLPGFGKSTTAKMLNDILSQNGIEVEL 36 (282)
T ss_pred cEEEEECCCCCCHHHHHHHHHHhcCcCceEEEE
Confidence 458899999999999999999999865555443
No 421
>TIGR00017 cmk cytidylate kinase. This family consists of cytidylate kinase, which catalyzes the phosphorylation of cytidine 5-monophosphate (dCMP) to cytidine 5 -diphosphate (dCDP) in the presence of ATP or GTP. UMP and dCMP can also act as acceptors.
Probab=96.35 E-value=0.0036 Score=59.07 Aligned_cols=30 Identities=40% Similarity=0.517 Sum_probs=26.6
Q ss_pred eeEEeCCCCCcHHHHHHHHHHHcCCCeEEe
Q 035603 229 GYLLFGPPGTGKSTMIAAMANCLNYDVYDL 258 (431)
Q Consensus 229 g~LL~GPPGtGKTsla~aiA~~l~~~i~~l 258 (431)
-+-+.||+||||||+++.||..+++.+++-
T Consensus 4 ~i~i~G~~GsGKst~~~~la~~~~~~~~~~ 33 (217)
T TIGR00017 4 IIAIDGPSGAGKSTVAKAVAEKLGYAYLDS 33 (217)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCceeeC
Confidence 467899999999999999999999887753
No 422
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=96.34 E-value=0.038 Score=57.39 Aligned_cols=36 Identities=31% Similarity=0.396 Sum_probs=27.1
Q ss_pred CceeEEeCCCCCcHHHHHHHHHHHc-----CCCeEEecccC
Q 035603 227 KRGYLLFGPPGTGKSTMIAAMANCL-----NYDVYDLELTS 262 (431)
Q Consensus 227 ~rg~LL~GPPGtGKTsla~aiA~~l-----~~~i~~l~~~~ 262 (431)
++.++|.||+|+||||++..||..+ +..+..++...
T Consensus 221 ~~~i~~vGptGvGKTTt~~kLA~~~~~~~~g~~V~li~~D~ 261 (424)
T PRK05703 221 GGVVALVGPTGVGKTTTLAKLAARYALLYGKKKVALITLDT 261 (424)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEECCc
Confidence 4578899999999999999998754 34566555543
No 423
>KOG0480 consensus DNA replication licensing factor, MCM6 component [Replication, recombination and repair]
Probab=96.33 E-value=0.01 Score=62.96 Aligned_cols=155 Identities=18% Similarity=0.252 Sum_probs=91.2
Q ss_pred ccccccChhhHHHHHHHHHHHHhCHHHHHHhCCCCC--ceeEEeCCCCCcHHHHHHHHHHHcCCCeEEecccC----cC-
Q 035603 192 FDTLAMASKKKEAIKKDLIKFTEGKEYYAKIGKAWK--RGYLLFGPPGTGKSTMIAAMANCLNYDVYDLELTS----VE- 264 (431)
Q Consensus 192 f~~l~g~~~~k~~i~~~l~~~~~~~~~~~~~g~~~~--rg~LL~GPPGtGKTsla~aiA~~l~~~i~~l~~~~----~~- 264 (431)
|-.|.|.+.+|.-|. ...+.+-..+..-|.+.+ -.+++.|.||||||-+.++.++.+...+|..--.+ +.
T Consensus 344 ~PsIyGhe~VK~Gil---L~LfGGv~K~a~eg~~lRGDinv~iVGDPgt~KSQfLk~v~~fsPR~vYtsGkaSSaAGLTa 420 (764)
T KOG0480|consen 344 FPSIYGHELVKAGIL---LSLFGGVHKSAGEGTSLRGDINVCIVGDPGTGKSQFLKAVCAFSPRSVYTSGKASSAAGLTA 420 (764)
T ss_pred CccccchHHHHhhHH---HHHhCCccccCCCCccccCCceEEEeCCCCccHHHHHHHHhccCCcceEecCcccccccceE
Confidence 567788888888873 333443333343344443 24899999999999999999999988888653221 10
Q ss_pred ---ChHHHHHHHHHhhhc----------ccch---hhHHHHHHHHhcC---------cccCCCCceEEEEecCCCC----
Q 035603 265 ---NNNELRSLLVDISSK----------KKKS---NVTLSGLLNCIGG---------LWSTCGGERIIVFTTNHVD---- 315 (431)
Q Consensus 265 ---~~~~l~~l~~~~~~~----------~~~~---~~~~s~lL~~ldg---------~~~~~~~~~ivI~TTN~~~---- 315 (431)
..++--+...++... ++.. ....-.++.+|.. +...-+...-|++++|...
T Consensus 421 aVvkD~esgdf~iEAGALmLADnGICCIDEFDKMd~~dqvAihEAMEQQtISIaKAGv~aTLnARtSIlAAANPv~GhYd 500 (764)
T KOG0480|consen 421 AVVKDEESGDFTIEAGALMLADNGICCIDEFDKMDVKDQVAIHEAMEQQTISIAKAGVVATLNARTSILAAANPVGGHYD 500 (764)
T ss_pred EEEecCCCCceeeecCcEEEccCceEEechhcccChHhHHHHHHHHHhheehheecceEEeecchhhhhhhcCCcCCccc
Confidence 000001111111111 1111 1123345555542 2211122234788888652
Q ss_pred ---------CCChhhhccCceeEE-EEcCCCCHHHHHHHHHHhhch
Q 035603 316 ---------KLDPALIRRGRMDKH-IEMPYCCFEAFKVLAKNYLEI 351 (431)
Q Consensus 316 ---------~Ld~AllRpGRfd~~-I~~~~p~~~~r~~i~~~~l~~ 351 (431)
+++++++. |||.. |-+.-|+...=..|.++.+..
T Consensus 501 R~ktl~eNi~msApimS--RFDL~FiLlD~~nE~~D~~ia~hIld~ 544 (764)
T KOG0480|consen 501 RKKTLRENINMSAPIMS--RFDLFFILLDDCNEVVDYAIARHILDL 544 (764)
T ss_pred cccchhhhcCCCchhhh--hhcEEEEEecCCchHHHHHHHHHHHHH
Confidence 47899999 99976 567889987777777776643
No 424
>PRK10867 signal recognition particle protein; Provisional
Probab=96.32 E-value=0.0064 Score=63.12 Aligned_cols=63 Identities=16% Similarity=0.246 Sum_probs=40.2
Q ss_pred hhHHHHHHHHHHHHhCH-HHHHHhCCCCCceeEEeCCCCCcHHHHHHHHHHHc----CCCeEEecccCc
Q 035603 200 KKKEAIKKDLIKFTEGK-EYYAKIGKAWKRGYLLFGPPGTGKSTMIAAMANCL----NYDVYDLELTSV 263 (431)
Q Consensus 200 ~~k~~i~~~l~~~~~~~-~~~~~~g~~~~rg~LL~GPPGtGKTsla~aiA~~l----~~~i~~l~~~~~ 263 (431)
.+.+.+.+.+...+... ..+. .....|.-+++.||||+||||++..+|..+ |..+..+++...
T Consensus 73 ~~~~~v~~el~~~l~~~~~~~~-~~~~~p~vI~~vG~~GsGKTTtaakLA~~l~~~~G~kV~lV~~D~~ 140 (433)
T PRK10867 73 QVIKIVNDELVEILGGENSELN-LAAKPPTVIMMVGLQGAGKTTTAGKLAKYLKKKKKKKVLLVAADVY 140 (433)
T ss_pred HHHHHHHHHHHHHhCCCcceee-ecCCCCEEEEEECCCCCcHHHHHHHHHHHHHHhcCCcEEEEEcccc
Confidence 35555555666655421 1111 122336788999999999999888888754 666766666544
No 425
>PRK00023 cmk cytidylate kinase; Provisional
Probab=96.31 E-value=0.0031 Score=59.78 Aligned_cols=33 Identities=27% Similarity=0.395 Sum_probs=28.7
Q ss_pred ceeEEeCCCCCcHHHHHHHHHHHcCCCeEEecc
Q 035603 228 RGYLLFGPPGTGKSTMIAAMANCLNYDVYDLEL 260 (431)
Q Consensus 228 rg~LL~GPPGtGKTsla~aiA~~l~~~i~~l~~ 260 (431)
.-+.+.||||||||++++.+|..+|+++++.+.
T Consensus 5 ~~i~i~g~~gsGksti~~~la~~~~~~~~~~~~ 37 (225)
T PRK00023 5 IVIAIDGPAGSGKGTVAKILAKKLGFHYLDTGA 37 (225)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhCCCcccCch
Confidence 457889999999999999999999998876543
No 426
>TIGR03263 guanyl_kin guanylate kinase. Members of this family are the enzyme guanylate kinase, also called GMP kinase. This enzyme transfers a phosphate from ATP to GMP, yielding ADP and GDP.
Probab=96.31 E-value=0.0031 Score=57.05 Aligned_cols=26 Identities=31% Similarity=0.402 Sum_probs=22.8
Q ss_pred ceeEEeCCCCCcHHHHHHHHHHHcCC
Q 035603 228 RGYLLFGPPGTGKSTMIAAMANCLNY 253 (431)
Q Consensus 228 rg~LL~GPPGtGKTsla~aiA~~l~~ 253 (431)
+-++|.||+|+|||++++.|++.+..
T Consensus 2 ~ii~l~G~~GsGKsTl~~~L~~~~~~ 27 (180)
T TIGR03263 2 LLIVISGPSGVGKSTLVKALLEEDPN 27 (180)
T ss_pred cEEEEECCCCCCHHHHHHHHHccCcc
Confidence 35789999999999999999997654
No 427
>cd02028 UMPK_like Uridine monophosphate kinase_like (UMPK_like) is a family of proteins highly similar to the uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK).
Probab=96.31 E-value=0.0041 Score=56.79 Aligned_cols=34 Identities=26% Similarity=0.404 Sum_probs=26.6
Q ss_pred eEEeCCCCCcHHHHHHHHHHHcC---CCeEEecccCc
Q 035603 230 YLLFGPPGTGKSTMIAAMANCLN---YDVYDLELTSV 263 (431)
Q Consensus 230 ~LL~GPPGtGKTsla~aiA~~l~---~~i~~l~~~~~ 263 (431)
+.+.|+||||||++++.|+..++ .++..++..+.
T Consensus 2 i~i~G~sgsGKttla~~l~~~l~~~~~~~~~i~~Ddf 38 (179)
T cd02028 2 VGIAGPSGSGKTTFAKKLSNQLRVNGIGPVVISLDDY 38 (179)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHcCCCEEEEehhhc
Confidence 57899999999999999999874 55555554443
No 428
>TIGR03881 KaiC_arch_4 KaiC domain protein, PAE1156 family. Members of this protein family are archaeal single-domain KaiC_related proteins, homologous to the Cyanobacterial circadian clock cycle protein KaiC, an autokinase/autophosphorylase that has two copies of the domain.
Probab=96.30 E-value=0.0038 Score=58.94 Aligned_cols=38 Identities=24% Similarity=0.139 Sum_probs=29.1
Q ss_pred CCCCCceeEEeCCCCCcHHHHHHHHHHHc---CCCeEEecc
Q 035603 223 GKAWKRGYLLFGPPGTGKSTMIAAMANCL---NYDVYDLEL 260 (431)
Q Consensus 223 g~~~~rg~LL~GPPGtGKTsla~aiA~~l---~~~i~~l~~ 260 (431)
|++....+++.||||||||+++..++... +..++.++.
T Consensus 16 Gi~~G~~~~i~G~~G~GKT~l~~~~~~~~~~~g~~~~~is~ 56 (229)
T TIGR03881 16 GIPRGFFVAVTGEPGTGKTIFCLHFAYKGLRDGDPVIYVTT 56 (229)
T ss_pred CCcCCeEEEEECCCCCChHHHHHHHHHHHHhcCCeEEEEEc
Confidence 67778889999999999999999876532 445555544
No 429
>PRK05480 uridine/cytidine kinase; Provisional
Probab=96.30 E-value=0.0053 Score=57.17 Aligned_cols=34 Identities=18% Similarity=0.166 Sum_probs=26.1
Q ss_pred CceeEEeCCCCCcHHHHHHHHHHHcCC-CeEEecc
Q 035603 227 KRGYLLFGPPGTGKSTMIAAMANCLNY-DVYDLEL 260 (431)
Q Consensus 227 ~rg~LL~GPPGtGKTsla~aiA~~l~~-~i~~l~~ 260 (431)
+.-+.+.||||||||||+++|+..++. .+..++.
T Consensus 6 ~~iI~I~G~sGsGKTTl~~~l~~~l~~~~~~~i~~ 40 (209)
T PRK05480 6 PIIIGIAGGSGSGKTTVASTIYEELGDESIAVIPQ 40 (209)
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHhCCCceEEEeC
Confidence 345789999999999999999999842 3444443
No 430
>PF00485 PRK: Phosphoribulokinase / Uridine kinase family; InterPro: IPR006083 Phosphoribulokinase (PRK) 2.7.1.19 from EC catalyses the ATP-dependent phosphorylation of ribulose-5-phosphate to ribulose-1,5-phosphate, a key step in the pentose phosphate pathway where carbon dioxide is assimilated by autotrophic organisms []. In general, plant enzymes are light-activated by the thioredoxin/ferredoxin system, while those from photosynthetic bacteria are regulated by a system that has an absolute requirement for NADH. Thioredoxin/ferredoxin regulation is mediated by the reversible oxidation/reduction of sulphydryl and disulphide groups. Uridine kinase (pyrimidine ribonucleoside kinase) is the rate-limiting enzyme in the pyrimidine salvage pathway. It catalyzes the following reaction: ATP + Uridine = ADP + UMP Pantothenate kinase (2.7.1.33 from EC) catalyzes the rate-limiting step in the biosynthesis of coenzyme A, the conversion of pantothenate to D-4'-phosphopantothenate in the presence of ATP. ; GO: 0005524 ATP binding, 0016301 kinase activity, 0008152 metabolic process; PDB: 2ZSE_A 2ZS7_A 3AF0_A 3AVP_A 2ZS9_A 2ZS8_A 3AEZ_A 2ZSB_A 2ZSD_A 2GEV_A ....
Probab=96.29 E-value=0.0029 Score=58.38 Aligned_cols=23 Identities=39% Similarity=0.660 Sum_probs=21.4
Q ss_pred eEEeCCCCCcHHHHHHHHHHHcC
Q 035603 230 YLLFGPPGTGKSTMIAAMANCLN 252 (431)
Q Consensus 230 ~LL~GPPGtGKTsla~aiA~~l~ 252 (431)
+-+.||||+||||+|++|+..|+
T Consensus 2 IgI~G~sgSGKTTla~~L~~~L~ 24 (194)
T PF00485_consen 2 IGIAGPSGSGKTTLAKRLAQILN 24 (194)
T ss_dssp EEEEESTTSSHHHHHHHHHHHHT
T ss_pred EEEECCCCCCHHHHHHHHHHHhC
Confidence 56899999999999999999997
No 431
>PF13555 AAA_29: P-loop containing region of AAA domain
Probab=96.28 E-value=0.0045 Score=46.38 Aligned_cols=23 Identities=43% Similarity=0.722 Sum_probs=20.4
Q ss_pred eeEEeCCCCCcHHHHHHHHHHHc
Q 035603 229 GYLLFGPPGTGKSTMIAAMANCL 251 (431)
Q Consensus 229 g~LL~GPPGtGKTsla~aiA~~l 251 (431)
..+|+||.|+|||++..||.-.+
T Consensus 25 ~tli~G~nGsGKSTllDAi~~~L 47 (62)
T PF13555_consen 25 VTLITGPNGSGKSTLLDAIQTVL 47 (62)
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 38999999999999999997654
No 432
>TIGR00235 udk uridine kinase. Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below
Probab=96.28 E-value=0.0037 Score=58.29 Aligned_cols=26 Identities=23% Similarity=0.179 Sum_probs=22.4
Q ss_pred ceeEEeCCCCCcHHHHHHHHHHHcCC
Q 035603 228 RGYLLFGPPGTGKSTMIAAMANCLNY 253 (431)
Q Consensus 228 rg~LL~GPPGtGKTsla~aiA~~l~~ 253 (431)
.-+.+.||+|+|||||+++|++.++.
T Consensus 7 ~vi~I~G~sGsGKSTl~~~l~~~l~~ 32 (207)
T TIGR00235 7 IIIGIGGGSGSGKTTVARKIYEQLGK 32 (207)
T ss_pred EEEEEECCCCCCHHHHHHHHHHHhcc
Confidence 34568999999999999999998763
No 433
>PRK04328 hypothetical protein; Provisional
Probab=96.27 E-value=0.004 Score=59.93 Aligned_cols=40 Identities=28% Similarity=0.254 Sum_probs=30.7
Q ss_pred CCCCCceeEEeCCCCCcHHHHHHHHHHH---cCCCeEEecccC
Q 035603 223 GKAWKRGYLLFGPPGTGKSTMIAAMANC---LNYDVYDLELTS 262 (431)
Q Consensus 223 g~~~~rg~LL~GPPGtGKTsla~aiA~~---l~~~i~~l~~~~ 262 (431)
|+|.+..+|++||||||||+|+..++.+ -|-+.+.++...
T Consensus 19 Gip~gs~ili~G~pGsGKT~l~~~fl~~~~~~ge~~lyis~ee 61 (249)
T PRK04328 19 GIPERNVVLLSGGPGTGKSIFSQQFLWNGLQMGEPGVYVALEE 61 (249)
T ss_pred CCcCCcEEEEEcCCCCCHHHHHHHHHHHHHhcCCcEEEEEeeC
Confidence 6888888999999999999998876543 355666665544
No 434
>PLN02842 nucleotide kinase
Probab=96.27 E-value=0.027 Score=59.37 Aligned_cols=27 Identities=19% Similarity=0.335 Sum_probs=24.5
Q ss_pred EEeCCCCCcHHHHHHHHHHHcCCCeEE
Q 035603 231 LLFGPPGTGKSTMIAAMANCLNYDVYD 257 (431)
Q Consensus 231 LL~GPPGtGKTsla~aiA~~l~~~i~~ 257 (431)
++.||||+||||+++.||+.+++..+.
T Consensus 1 ~I~G~PGSGKSTqa~~Lak~lg~~hIs 27 (505)
T PLN02842 1 MISGAPASGKGTQCELIVHKFGLVHIS 27 (505)
T ss_pred CeeCCCCCCHHHHHHHHHHHhCCCEEE
Confidence 578999999999999999999987665
No 435
>TIGR03880 KaiC_arch_3 KaiC domain protein, AF_0351 family. This model represents a rather narrowly distributed archaeal protein family in which members have a single copy of the KaiC domain. This stands in contrast to the circadian clock protein KaiC itself, with two copies of the domain. Members are expected to have weak ATPase activity, by homology to the autokinase/autophosphorylase KaiC itself.
Probab=96.26 E-value=0.0062 Score=57.38 Aligned_cols=40 Identities=20% Similarity=0.166 Sum_probs=31.4
Q ss_pred CCCCCceeEEeCCCCCcHHHHHHHHHHH---cCCCeEEecccC
Q 035603 223 GKAWKRGYLLFGPPGTGKSTMIAAMANC---LNYDVYDLELTS 262 (431)
Q Consensus 223 g~~~~rg~LL~GPPGtGKTsla~aiA~~---l~~~i~~l~~~~ 262 (431)
|+|...-+++.||||+|||+++..+|.. .|.+++.++...
T Consensus 12 Gi~~g~~~li~G~~G~GKt~~~~~~~~~~~~~g~~~~y~s~e~ 54 (224)
T TIGR03880 12 GFPEGHVIVVIGEYGTGKTTFSLQFLYQGLKNGEKAMYISLEE 54 (224)
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEECCC
Confidence 6777888999999999999999988753 266666666544
No 436
>PRK13833 conjugal transfer protein TrbB; Provisional
Probab=96.26 E-value=0.0065 Score=60.68 Aligned_cols=25 Identities=24% Similarity=0.446 Sum_probs=23.1
Q ss_pred CceeEEeCCCCCcHHHHHHHHHHHc
Q 035603 227 KRGYLLFGPPGTGKSTMIAAMANCL 251 (431)
Q Consensus 227 ~rg~LL~GPPGtGKTsla~aiA~~l 251 (431)
+..+|+.||+|+||||+++|++.++
T Consensus 144 ~~nilI~G~tGSGKTTll~aL~~~i 168 (323)
T PRK13833 144 RLNIVISGGTGSGKTTLANAVIAEI 168 (323)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHH
Confidence 5689999999999999999999876
No 437
>PF01202 SKI: Shikimate kinase; InterPro: IPR000623 Shikimate kinase (2.7.1.71 from EC) catalyses the fifth step in the biosynthesis of aromatic amino acids from chorismate (the so-called shikimate pathway) []. The enzyme catalyses the following reaction: ATP + shikimate = ADP + shikimate-3-phosphate The protein is found in bacteria (gene aroK or aroL), plants and fungi (where it is part of a multifunctional enzyme that catalyses five consecutive steps in this pathway). In 1994, the 3D structure of shikimate kinase was predicted to be very close to that of adenylate kinase, suggesting a functional similarity as well as an evolutionary relationship []. This prediction has since been confirmed experimentally. The protein is reported to possess an alpha/beta fold, consisting of a central sheet of five parallel beta-strands flanked by alpha-helices. Such a topology is very similar to that of adenylate kinase [].; GO: 0004765 shikimate kinase activity, 0005524 ATP binding; PDB: 3VAA_C 1KO8_B 1KO4_B 1KO1_A 1KOF_A 1KNQ_A 1KO5_A 1KAG_A 2PT5_D 1SHK_A ....
Probab=96.26 E-value=0.0026 Score=56.76 Aligned_cols=26 Identities=35% Similarity=0.362 Sum_probs=24.2
Q ss_pred CCCcHHHHHHHHHHHcCCCeEEeccc
Q 035603 236 PGTGKSTMIAAMANCLNYDVYDLELT 261 (431)
Q Consensus 236 PGtGKTsla~aiA~~l~~~i~~l~~~ 261 (431)
||+|||++++.+|..|+++|+++|..
T Consensus 1 ~GsGKStvg~~lA~~L~~~fiD~D~~ 26 (158)
T PF01202_consen 1 MGSGKSTVGKLLAKRLGRPFIDLDDE 26 (158)
T ss_dssp TTSSHHHHHHHHHHHHTSEEEEHHHH
T ss_pred CCCcHHHHHHHHHHHhCCCccccCHH
Confidence 79999999999999999999998753
No 438
>cd01672 TMPK Thymidine monophosphate kinase (TMPK), also known as thymidylate kinase, catalyzes the phosphorylation of thymidine monophosphate (TMP) to thymidine diphosphate (TDP) utilizing ATP as its preferred phophoryl donor. TMPK represents the rate-limiting step in either de novo or salvage biosynthesis of thymidine triphosphate (TTP).
Probab=96.25 E-value=0.0046 Score=56.37 Aligned_cols=45 Identities=29% Similarity=0.410 Sum_probs=31.1
Q ss_pred eEEeCCCCCcHHHHHHHHHHHc---CCCeEEecccCc-CChHHHHHHHH
Q 035603 230 YLLFGPPGTGKSTMIAAMANCL---NYDVYDLELTSV-ENNNELRSLLV 274 (431)
Q Consensus 230 ~LL~GPPGtGKTsla~aiA~~l---~~~i~~l~~~~~-~~~~~l~~l~~ 274 (431)
+.|.||+|+||||+++.||+.+ |..++.+....- .....+++++.
T Consensus 3 I~ieG~~GsGKtT~~~~L~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~ 51 (200)
T cd01672 3 IVFEGIDGAGKTTLIELLAERLEARGYEVVLTREPGGTPIGEAIRELLL 51 (200)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEeCCCCCchHHHHHHHHh
Confidence 6788999999999999999988 666655543221 12344555543
No 439
>cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine.
Probab=96.23 E-value=0.0055 Score=56.52 Aligned_cols=22 Identities=27% Similarity=0.421 Sum_probs=20.5
Q ss_pred eEEeCCCCCcHHHHHHHHHHHc
Q 035603 230 YLLFGPPGTGKSTMIAAMANCL 251 (431)
Q Consensus 230 ~LL~GPPGtGKTsla~aiA~~l 251 (431)
+.|.||+|+|||+++++|++.+
T Consensus 2 igi~G~~GsGKSTl~~~l~~~l 23 (198)
T cd02023 2 IGIAGGSGSGKTTVAEEIIEQL 23 (198)
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 5689999999999999999987
No 440
>TIGR02239 recomb_RAD51 DNA repair protein RAD51. This eukaryotic sequence family consists of RAD51, a protein involved in DNA homologous recombination and repair. It is similar in sequence the exclusively meiotic recombinase DMC1 (TIGR02238), to archaeal families RadA (TIGR02236) and RadB (TIGR02237), and to bacterial RecA (TIGR02012).
Probab=96.23 E-value=0.016 Score=57.77 Aligned_cols=51 Identities=16% Similarity=0.121 Sum_probs=34.9
Q ss_pred CCCCCceeEEeCCCCCcHHHHHHHHHHHcC---------CCeEEecccCcCChHHHHHHH
Q 035603 223 GKAWKRGYLLFGPPGTGKSTMIAAMANCLN---------YDVYDLELTSVENNNELRSLL 273 (431)
Q Consensus 223 g~~~~rg~LL~GPPGtGKTsla~aiA~~l~---------~~i~~l~~~~~~~~~~l~~l~ 273 (431)
|++...-++++||||+|||+++..+|.... -.++.++....-....+..+.
T Consensus 92 Gi~~g~i~~i~G~~g~GKT~l~~~~~~~~~~~~~~Gg~~~~vvyIdtE~~f~~~Rl~~ia 151 (316)
T TIGR02239 92 GIETGSITEIFGEFRTGKTQLCHTLAVTCQLPIDQGGGEGKALYIDTEGTFRPERLLAIA 151 (316)
T ss_pred CCCCCeEEEEECCCCCCcCHHHHHHHHHHhhhhhcCCCCceEEEEECCCCCCHHHHHHHH
Confidence 677777889999999999999998875321 245566655533344454443
No 441
>TIGR02525 plasmid_TraJ plasmid transfer ATPase TraJ. Members of this protein family are predicted ATPases associated with plasmid transfer loci in bacteria. This family is most similar to the DotB ATPase of a type-IV secretion-like system of obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii (TIGR02524).
Probab=96.23 E-value=0.0085 Score=61.04 Aligned_cols=23 Identities=35% Similarity=0.437 Sum_probs=21.2
Q ss_pred eeEEeCCCCCcHHHHHHHHHHHc
Q 035603 229 GYLLFGPPGTGKSTMIAAMANCL 251 (431)
Q Consensus 229 g~LL~GPPGtGKTsla~aiA~~l 251 (431)
.+|+.||+|+||||++++++.++
T Consensus 151 lilI~G~TGSGKTT~l~al~~~i 173 (372)
T TIGR02525 151 LGLICGETGSGKSTLAASIYQHC 173 (372)
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 57899999999999999999877
No 442
>cd00071 GMPK Guanosine monophosphate kinase (GMPK, EC 2.7.4.8), also known as guanylate kinase (GKase), catalyzes the reversible phosphoryl transfer from adenosine triphosphate (ATP) to guanosine monophosphate (GMP) to yield adenosine diphosphate (ADP) and guanosine diphosphate (GDP). It plays an essential role in the biosynthesis of guanosine triphosphate (GTP). This enzyme is also important for the activation of some antiviral and anticancer agents, such as acyclovir, ganciclovir, carbovir, and thiopurines.
Probab=96.22 E-value=0.0045 Score=53.95 Aligned_cols=25 Identities=32% Similarity=0.606 Sum_probs=22.0
Q ss_pred eEEeCCCCCcHHHHHHHHHHHcCCC
Q 035603 230 YLLFGPPGTGKSTMIAAMANCLNYD 254 (431)
Q Consensus 230 ~LL~GPPGtGKTsla~aiA~~l~~~ 254 (431)
+.|.||+|+|||++++.|+..+...
T Consensus 2 i~i~GpsGsGKstl~~~L~~~~~~~ 26 (137)
T cd00071 2 IVLSGPSGVGKSTLLKRLLEEFDPN 26 (137)
T ss_pred EEEECCCCCCHHHHHHHHHhcCCcc
Confidence 5789999999999999999987644
No 443
>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed
Probab=96.20 E-value=0.0041 Score=68.87 Aligned_cols=30 Identities=37% Similarity=0.526 Sum_probs=26.7
Q ss_pred eeEEeCCCCCcHHHHHHHHHHHcCCCeEEe
Q 035603 229 GYLLFGPPGTGKSTMIAAMANCLNYDVYDL 258 (431)
Q Consensus 229 g~LL~GPPGtGKTsla~aiA~~l~~~i~~l 258 (431)
-+.+-|||||||||+++.||..+|+.+++.
T Consensus 3 ~i~I~G~~GsGKST~ak~la~~l~~~~~~~ 32 (712)
T PRK09518 3 IVAIDGPAGVGKSSVSRALAQYLGYAYLDT 32 (712)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCcEeec
Confidence 367899999999999999999999887754
No 444
>TIGR00554 panK_bact pantothenate kinase, bacterial type. Shown to be a homodimer in E. coli. This enzyme catalyzes the rate-limiting step in the biosynthesis of coenzyme A. It is very well conserved from E. coli to B. subtilis, but differs considerably from known eukaryotic forms, described in a separate model.
Probab=96.20 E-value=0.056 Score=53.26 Aligned_cols=26 Identities=23% Similarity=0.180 Sum_probs=21.8
Q ss_pred CceeEEeCCCCCcHHHHHHHHHHHcC
Q 035603 227 KRGYLLFGPPGTGKSTMIAAMANCLN 252 (431)
Q Consensus 227 ~rg~LL~GPPGtGKTsla~aiA~~l~ 252 (431)
|.-+-+.||+|+||||+++.|+..+.
T Consensus 62 p~IIGIaG~~GSGKSTlar~L~~ll~ 87 (290)
T TIGR00554 62 PYIISIAGSVAVGKSTTARILQALLS 87 (290)
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHHh
Confidence 44566899999999999999988764
No 445
>PLN03186 DNA repair protein RAD51 homolog; Provisional
Probab=96.19 E-value=0.018 Score=58.05 Aligned_cols=51 Identities=12% Similarity=0.087 Sum_probs=36.1
Q ss_pred CCCCCceeEEeCCCCCcHHHHHHHHHHHcC---------CCeEEecccCcCChHHHHHHH
Q 035603 223 GKAWKRGYLLFGPPGTGKSTMIAAMANCLN---------YDVYDLELTSVENNNELRSLL 273 (431)
Q Consensus 223 g~~~~rg~LL~GPPGtGKTsla~aiA~~l~---------~~i~~l~~~~~~~~~~l~~l~ 273 (431)
|++...-++++||||+|||+++..+|-... -.++.++...--..+++.++.
T Consensus 119 G~~~g~i~~i~G~~g~GKT~l~~~l~~~~~~~~~~gg~~g~vlyIdtE~~f~~eRl~qia 178 (342)
T PLN03186 119 GIETGSITEIYGEFRTGKTQLCHTLCVTCQLPLDQGGGEGKAMYIDTEGTFRPQRLIQIA 178 (342)
T ss_pred CCcCceEEEEECCCCCCccHHHHHHHHHhhcchhhCCCCceEEEEECCCCccHHHHHHHH
Confidence 677777789999999999999998774321 256666665543455566554
No 446
>TIGR00174 miaA tRNA isopentenyltransferase (miaA). Catalyzes the first step in the modification of an adenosine near the anticodon to 2-methylthio-N6-isopentyladenosine.
Probab=96.19 E-value=0.0051 Score=60.40 Aligned_cols=33 Identities=24% Similarity=0.505 Sum_probs=29.2
Q ss_pred eEEeCCCCCcHHHHHHHHHHHcCCCeEEecccC
Q 035603 230 YLLFGPPGTGKSTMIAAMANCLNYDVYDLELTS 262 (431)
Q Consensus 230 ~LL~GPPGtGKTsla~aiA~~l~~~i~~l~~~~ 262 (431)
+++.||+|+|||+++..+|..++..++.+|...
T Consensus 2 i~i~G~t~~GKs~la~~l~~~~~~~iis~Ds~q 34 (287)
T TIGR00174 2 IFIMGPTAVGKSQLAIQLAKKLNAEIISVDSMQ 34 (287)
T ss_pred EEEECCCCCCHHHHHHHHHHhCCCcEEEechhh
Confidence 678999999999999999999999888876543
No 447
>PF02367 UPF0079: Uncharacterised P-loop hydrolase UPF0079; InterPro: IPR003442 This group consists of bacterial proteins, which contain a P-loop. They are probably essential to bacteria as members are found in all genomes so far sequenced and no equivalent genes have been found in the archaea and eukaryotes, suggesting the protein may be involved in cell wall biosynthesis. The sequence of YjeE, from Haemophilus influenzae, has been determined to 1.7-A resolution. The protein has a nucleotide-binding fold with a four-stranded parallel beta-sheet flanked by antiparallel beta-strands on each side. The topology of the beta-sheet is unique among P-loop proteins and has features of different families of enzymes. ADP has been shown to bind to the P-loop in the presence of Mg2+ and ATPase activity has been confirmed by kinetic measurements [].; PDB: 1HTW_A 1FL9_A.
Probab=96.19 E-value=0.0047 Score=52.93 Aligned_cols=29 Identities=34% Similarity=0.442 Sum_probs=24.2
Q ss_pred CCceeEEeCCCCCcHHHHHHHHHHHcCCC
Q 035603 226 WKRGYLLFGPPGTGKSTMIAAMANCLNYD 254 (431)
Q Consensus 226 ~~rg~LL~GPPGtGKTsla~aiA~~l~~~ 254 (431)
...-++|+|+=|+|||+++|++|..+|.+
T Consensus 14 ~g~vi~L~GdLGaGKTtf~r~l~~~lg~~ 42 (123)
T PF02367_consen 14 PGDVILLSGDLGAGKTTFVRGLARALGID 42 (123)
T ss_dssp S-EEEEEEESTTSSHHHHHHHHHHHTT--
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHcCCC
Confidence 34678999999999999999999999864
No 448
>PRK14738 gmk guanylate kinase; Provisional
Probab=96.18 E-value=0.0041 Score=58.10 Aligned_cols=25 Identities=28% Similarity=0.411 Sum_probs=21.8
Q ss_pred CCceeEEeCCCCCcHHHHHHHHHHH
Q 035603 226 WKRGYLLFGPPGTGKSTMIAAMANC 250 (431)
Q Consensus 226 ~~rg~LL~GPPGtGKTsla~aiA~~ 250 (431)
.++-++|.||||+|||+|+++++..
T Consensus 12 ~~~~ivi~GpsG~GK~tl~~~L~~~ 36 (206)
T PRK14738 12 KPLLVVISGPSGVGKDAVLARMRER 36 (206)
T ss_pred CCeEEEEECcCCCCHHHHHHHHHhc
Confidence 4567889999999999999999854
No 449
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=96.17 E-value=0.0039 Score=57.83 Aligned_cols=24 Identities=50% Similarity=0.747 Sum_probs=21.4
Q ss_pred eeEEeCCCCCcHHHHHHHHHHHcC
Q 035603 229 GYLLFGPPGTGKSTMIAAMANCLN 252 (431)
Q Consensus 229 g~LL~GPPGtGKTsla~aiA~~l~ 252 (431)
-+++.||+|+||||++++++.++.
T Consensus 3 lilI~GptGSGKTTll~~ll~~~~ 26 (198)
T cd01131 3 LVLVTGPTGSGKSTTLAAMIDYIN 26 (198)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhh
Confidence 367899999999999999998875
No 450
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=96.17 E-value=0.013 Score=60.36 Aligned_cols=61 Identities=23% Similarity=0.272 Sum_probs=35.7
Q ss_pred hHHHHHHHHHHHHhC-HHHHHHhCCCCCceeEEeCCCCCcHHHHHHHHHHHc----CCCeEEeccc
Q 035603 201 KKEAIKKDLIKFTEG-KEYYAKIGKAWKRGYLLFGPPGTGKSTMIAAMANCL----NYDVYDLELT 261 (431)
Q Consensus 201 ~k~~i~~~l~~~~~~-~~~~~~~g~~~~rg~LL~GPPGtGKTsla~aiA~~l----~~~i~~l~~~ 261 (431)
+.+.+.+.+...+.. ...+...|...++-++|.||+|+||||++..+|..+ |..+..+++.
T Consensus 196 ~~~~l~~~L~~~l~~~~~~~~~~g~~~~~vi~lvGptGvGKTTtaaKLA~~~~~~~G~~V~Lit~D 261 (432)
T PRK12724 196 VTERAVTYLEERVSVDSDLFSGTGKNQRKVVFFVGPTGSGKTTSIAKLAAKYFLHMGKSVSLYTTD 261 (432)
T ss_pred HHHHHHHHHHHhcccchhhhhhcccCCCeEEEEECCCCCCHHHHHHHHHHHHHHhcCCeEEEeccc
Confidence 444455555444432 111222222234568899999999999999999754 4445544443
No 451
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=96.17 E-value=0.0038 Score=57.98 Aligned_cols=26 Identities=42% Similarity=0.623 Sum_probs=22.6
Q ss_pred CceeEEeCCCCCcHHHHHHHHHHHcC
Q 035603 227 KRGYLLFGPPGTGKSTMIAAMANCLN 252 (431)
Q Consensus 227 ~rg~LL~GPPGtGKTsla~aiA~~l~ 252 (431)
|+-++|.||+|+||||.+..||..+.
T Consensus 1 p~vi~lvGptGvGKTTt~aKLAa~~~ 26 (196)
T PF00448_consen 1 PKVIALVGPTGVGKTTTIAKLAARLK 26 (196)
T ss_dssp SEEEEEEESTTSSHHHHHHHHHHHHH
T ss_pred CEEEEEECCCCCchHhHHHHHHHHHh
Confidence 46789999999999999999987653
No 452
>COG4133 CcmA ABC-type transport system involved in cytochrome c biogenesis, ATPase component [Posttranslational modification, protein turnover, chaperones]
Probab=96.16 E-value=0.019 Score=52.51 Aligned_cols=26 Identities=31% Similarity=0.561 Sum_probs=22.3
Q ss_pred ceeEEeCCCCCcHHHHHHHHHHHcCC
Q 035603 228 RGYLLFGPPGTGKSTMIAAMANCLNY 253 (431)
Q Consensus 228 rg~LL~GPPGtGKTsla~aiA~~l~~ 253 (431)
-.+.+.||.|+|||||.|.||+-+..
T Consensus 29 e~~~i~G~NG~GKTtLLRilaGLl~p 54 (209)
T COG4133 29 EALQITGPNGAGKTTLLRILAGLLRP 54 (209)
T ss_pred CEEEEECCCCCcHHHHHHHHHcccCC
Confidence 35678899999999999999997653
No 453
>PRK10646 ADP-binding protein; Provisional
Probab=96.15 E-value=0.012 Score=52.24 Aligned_cols=28 Identities=25% Similarity=0.400 Sum_probs=25.0
Q ss_pred CceeEEeCCCCCcHHHHHHHHHHHcCCC
Q 035603 227 KRGYLLFGPPGTGKSTMIAAMANCLNYD 254 (431)
Q Consensus 227 ~rg~LL~GPPGtGKTsla~aiA~~l~~~ 254 (431)
+.-++|.|+=|+|||+++|++|+.+|.+
T Consensus 28 g~vi~L~GdLGaGKTtf~rgl~~~Lg~~ 55 (153)
T PRK10646 28 ATVIYLYGDLGAGKTTFSRGFLQALGHQ 55 (153)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHcCCC
Confidence 3468999999999999999999999863
No 454
>PF13604 AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL_A 3E1S_A 3GP8_A.
Probab=96.14 E-value=0.0088 Score=55.42 Aligned_cols=36 Identities=42% Similarity=0.600 Sum_probs=26.4
Q ss_pred CceeEEeCCCCCcHHHHHHHHHHHc---CCCeEEecccC
Q 035603 227 KRGYLLFGPPGTGKSTMIAAMANCL---NYDVYDLELTS 262 (431)
Q Consensus 227 ~rg~LL~GPPGtGKTsla~aiA~~l---~~~i~~l~~~~ 262 (431)
.+..++.||||||||+++++++..+ +..++.+..+.
T Consensus 18 ~~~~~l~G~aGtGKT~~l~~~~~~~~~~g~~v~~~apT~ 56 (196)
T PF13604_consen 18 DRVSVLQGPAGTGKTTLLKALAEALEAAGKRVIGLAPTN 56 (196)
T ss_dssp CSEEEEEESTTSTHHHHHHHHHHHHHHTT--EEEEESSH
T ss_pred CeEEEEEECCCCCHHHHHHHHHHHHHhCCCeEEEECCcH
Confidence 3578899999999999999987644 56666665554
No 455
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=96.14 E-value=0.0082 Score=61.31 Aligned_cols=58 Identities=24% Similarity=0.265 Sum_probs=38.3
Q ss_pred hhhHHHHHHHHHHHHhCHHHHHHhCCCCCceeEEeCCCCCcHHHHHHHHHHHc---CCCeEEecc
Q 035603 199 SKKKEAIKKDLIKFTEGKEYYAKIGKAWKRGYLLFGPPGTGKSTMIAAMANCL---NYDVYDLEL 260 (431)
Q Consensus 199 ~~~k~~i~~~l~~~~~~~~~~~~~g~~~~rg~LL~GPPGtGKTsla~aiA~~l---~~~i~~l~~ 260 (431)
.++++.+.+.+...+..+..+ ...++-++|.||+|+||||++..||..+ |..+..+++
T Consensus 217 ~~~~~~l~~~l~~~l~~~~~~----~~~~~vI~LVGptGvGKTTTiaKLA~~L~~~GkkVglI~a 277 (436)
T PRK11889 217 EEVIEYILEDMRSHFNTENVF----EKEVQTIALIGPTGVGKTTTLAKMAWQFHGKKKTVGFITT 277 (436)
T ss_pred HHHHHHHHHHHHHHhcccccc----ccCCcEEEEECCCCCcHHHHHHHHHHHHHHcCCcEEEEec
Confidence 456666666666655543221 1224678999999999999999999866 344444443
No 456
>PRK14974 cell division protein FtsY; Provisional
Probab=96.11 E-value=0.009 Score=60.03 Aligned_cols=60 Identities=28% Similarity=0.335 Sum_probs=36.7
Q ss_pred hHHHHHHHHHHHHhCHHHHHH---h-CCCCCceeEEeCCCCCcHHHHHHHHHHHc---CCCeEEecc
Q 035603 201 KKEAIKKDLIKFTEGKEYYAK---I-GKAWKRGYLLFGPPGTGKSTMIAAMANCL---NYDVYDLEL 260 (431)
Q Consensus 201 ~k~~i~~~l~~~~~~~~~~~~---~-g~~~~rg~LL~GPPGtGKTsla~aiA~~l---~~~i~~l~~ 260 (431)
+++.+.+.+...+....++.- . ....++-++|.||||+||||+++.+|..+ |..+..++.
T Consensus 110 ~~~~l~~~l~~~l~~~~~~~~~~~~~~~~~~~vi~~~G~~GvGKTTtiakLA~~l~~~g~~V~li~~ 176 (336)
T PRK14974 110 VKNALKEALLEVLSVGDLFDLIEEIKSKGKPVVIVFVGVNGTGKTTTIAKLAYYLKKNGFSVVIAAG 176 (336)
T ss_pred HHHHHHHHHHHHhCCCcchhhhhhhhccCCCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEEecC
Confidence 455556656555543221110 0 11225678999999999999999998765 445554543
No 457
>PLN02840 tRNA dimethylallyltransferase
Probab=96.08 E-value=0.0069 Score=62.37 Aligned_cols=33 Identities=27% Similarity=0.478 Sum_probs=29.1
Q ss_pred ceeEEeCCCCCcHHHHHHHHHHHcCCCeEEecc
Q 035603 228 RGYLLFGPPGTGKSTMIAAMANCLNYDVYDLEL 260 (431)
Q Consensus 228 rg~LL~GPPGtGKTsla~aiA~~l~~~i~~l~~ 260 (431)
.-+++.||+|+|||+++..||..++..++.+|.
T Consensus 22 ~vi~I~GptgsGKTtla~~La~~~~~~iis~Ds 54 (421)
T PLN02840 22 KVIVISGPTGAGKSRLALELAKRLNGEIISADS 54 (421)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHCCCCeEeccc
Confidence 357899999999999999999999988877664
No 458
>PRK14733 coaE dephospho-CoA kinase; Provisional
Probab=96.07 E-value=0.0066 Score=56.70 Aligned_cols=34 Identities=24% Similarity=0.173 Sum_probs=29.6
Q ss_pred ceeEEeCCCCCcHHHHHHHHHHHcCCCeEEeccc
Q 035603 228 RGYLLFGPPGTGKSTMIAAMANCLNYDVYDLELT 261 (431)
Q Consensus 228 rg~LL~GPPGtGKTsla~aiA~~l~~~i~~l~~~ 261 (431)
.-+-|+|++|||||++++.++.++|+++++.|..
T Consensus 7 ~~IglTG~iGsGKStv~~~l~~~lg~~vidaD~i 40 (204)
T PRK14733 7 YPIGITGGIASGKSTATRILKEKLNLNVVCADTI 40 (204)
T ss_pred EEEEEECCCCCCHHHHHHHHHHHcCCeEEeccHH
Confidence 3577999999999999999999999998877643
No 459
>PTZ00494 tuzin-like protein; Provisional
Probab=96.06 E-value=0.14 Score=53.07 Aligned_cols=48 Identities=10% Similarity=0.167 Sum_probs=40.7
Q ss_pred HHHHHHhCCCCCceeEEeCCCCCcHHHHHHHHHHHcCCCeEEecccCc
Q 035603 216 KEYYAKIGKAWKRGYLLFGPPGTGKSTMIAAMANCLNYDVYDLELTSV 263 (431)
Q Consensus 216 ~~~~~~~g~~~~rg~LL~GPPGtGKTsla~aiA~~l~~~i~~l~~~~~ 263 (431)
+..++++...+||-+.|.|..|||||++++.--...+.+.+.+|....
T Consensus 384 RqvL~qld~aHPRIvV~TG~~GcGKSslcRsAvrkE~~paV~VDVRg~ 431 (664)
T PTZ00494 384 RSVLTQMAPSHPRIVALAGGSGGGRCVPCRRAVRVEGVALVHVDVGGT 431 (664)
T ss_pred HHHHhhccCCCCcEEEEecCCCCCchHHHHHHHHHcCCCeEEEEecCC
Confidence 356777889999999999999999999999888888888777766543
No 460
>PRK11823 DNA repair protein RadA; Provisional
Probab=96.04 E-value=0.0077 Score=62.98 Aligned_cols=39 Identities=31% Similarity=0.294 Sum_probs=31.3
Q ss_pred CCCCCceeEEeCCCCCcHHHHHHHHHHHc---CCCeEEeccc
Q 035603 223 GKAWKRGYLLFGPPGTGKSTMIAAMANCL---NYDVYDLELT 261 (431)
Q Consensus 223 g~~~~rg~LL~GPPGtGKTsla~aiA~~l---~~~i~~l~~~ 261 (431)
|++...-+||+||||+|||+|+..+|... +.+++.++..
T Consensus 76 Gi~~Gs~~lI~G~pG~GKTtL~lq~a~~~a~~g~~vlYvs~E 117 (446)
T PRK11823 76 GLVPGSVVLIGGDPGIGKSTLLLQVAARLAAAGGKVLYVSGE 117 (446)
T ss_pred CccCCEEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEEcc
Confidence 67777788999999999999999998755 5666666543
No 461
>PRK03846 adenylylsulfate kinase; Provisional
Probab=96.04 E-value=0.0077 Score=55.74 Aligned_cols=35 Identities=29% Similarity=0.328 Sum_probs=27.6
Q ss_pred CCceeEEeCCCCCcHHHHHHHHHHHc---CCCeEEecc
Q 035603 226 WKRGYLLFGPPGTGKSTMIAAMANCL---NYDVYDLEL 260 (431)
Q Consensus 226 ~~rg~LL~GPPGtGKTsla~aiA~~l---~~~i~~l~~ 260 (431)
.+.-+.|.|+||+|||+++++|+..+ +...+.++.
T Consensus 23 ~~~~i~i~G~~GsGKSTla~~l~~~l~~~~~~~~~ld~ 60 (198)
T PRK03846 23 KGVVLWFTGLSGSGKSTVAGALEEALHELGVSTYLLDG 60 (198)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHHhCCCCEEEEcC
Confidence 34567899999999999999999987 444555554
No 462
>cd01129 PulE-GspE PulE/GspE The type II secretory pathway is the main terminal branch of the general secretory pathway (GSP). It is responsible for the export the majority of Gram-negative bacterial exoenzymes and toxins. PulE is a cytoplasmic protein of the GSP, which contains an ATP binding site and a tetracysteine motif. This subgroup also includes PillB and HofB.
Probab=96.04 E-value=0.011 Score=57.59 Aligned_cols=50 Identities=28% Similarity=0.365 Sum_probs=35.7
Q ss_pred CCCccccccChhhHHHHHHHHHHHHhCHHHHHHhCCCCCceeEEeCCCCCcHHHHHHHHHHHcC
Q 035603 189 PATFDTLAMASKKKEAIKKDLIKFTEGKEYYAKIGKAWKRGYLLFGPPGTGKSTMIAAMANCLN 252 (431)
Q Consensus 189 p~~f~~l~g~~~~k~~i~~~l~~~~~~~~~~~~~g~~~~rg~LL~GPPGtGKTsla~aiA~~l~ 252 (431)
+.++++++..++..+.|.+.+ .. ....+++.||+|+||||+++++..++.
T Consensus 56 ~~~l~~lg~~~~~~~~l~~~~----~~----------~~GlilisG~tGSGKTT~l~all~~i~ 105 (264)
T cd01129 56 ILDLEKLGLKPENLEIFRKLL----EK----------PHGIILVTGPTGSGKTTTLYSALSELN 105 (264)
T ss_pred CCCHHHcCCCHHHHHHHHHHH----hc----------CCCEEEEECCCCCcHHHHHHHHHhhhC
Confidence 356888888877766553322 11 122478999999999999999987764
No 463
>PF06431 Polyoma_lg_T_C: Polyomavirus large T antigen C-terminus; InterPro: IPR010932 The group of polyomaviruses is formed by the homonymous murine virus (Py) as well as other representative members such as the simian virus 40 (SV40) and the human BK and JC viruses []. Their large T antigen (T-ag) protein binds to and activates DNA replication from the origin of DNA replication (ori). Insofar as is known, the T-ag binds to the origin first as a monomer to its pentanucleotide recognition element. The monomers are then thought to assemble into hexamers and double hexamers, which constitute the form that is active in initiation of DNA replication. When bound to the ori, T-ag double hexamers encircle DNA []. T-ag is a multidomain protein that contains an N-terminal J domain, which mediates protein interactions (see PDOC00553 from PROSITEDOC, IPR001623 from INTERPRO), a central origin-binding domain (OBD), and a C-terminal superfamily 3 helicase domain (see PDOC51206 from PROSITEDOC, IPR010932 from INTERPRO) []. This entry represents the helicase domain of LTag, which assembles into a hexameric structure containing a positively charged central channel that can bind both single- and double-stranded DNA []. ATP binding and hydrolysis trigger large conformational changes which are thought to be coupled to the melting of origin DNA and the unwinding of duplex DNA []. These conformational changes cause the angles and orientations between regions of a monomer to alter, creating what was described as an "iris"-like motion in the hexamer. In addition to this, six beta hairpins on the channel surface move longitudinally along the central channel, possibly serving as a motor for pulling DNA into the LTag double hexamer for unwinding.; GO: 0003677 DNA binding, 0005524 ATP binding, 0006260 DNA replication; PDB: 2H1L_H 1SVO_A 1SVM_E 1SVL_B 1N25_A 4E2I_K.
Probab=96.03 E-value=0.011 Score=59.15 Aligned_cols=125 Identities=21% Similarity=0.224 Sum_probs=66.0
Q ss_pred hhHHHHHHHHHHHHhCHHHHHHhCCCCCceeEEeCCCCCcHHHHHHHHHHHcCCCeEEecccCcCChHHH-------HHH
Q 035603 200 KKKEAIKKDLIKFTEGKEYYAKIGKAWKRGYLLFGPPGTGKSTMIAAMANCLNYDVYDLELTSVENNNEL-------RSL 272 (431)
Q Consensus 200 ~~k~~i~~~l~~~~~~~~~~~~~g~~~~rg~LL~GPPGtGKTsla~aiA~~l~~~i~~l~~~~~~~~~~l-------~~l 272 (431)
+..+.|.+.+..... ++|.+|.+||-||-.|||||+|.|+-..+|-....+|+..-.-+-+| .-+
T Consensus 136 ~~~~~i~~iL~~lv~--------N~PKkRy~lFkGPvNsGKTTlAAAlLdL~gG~~LNvN~p~dkl~FELG~AiDQfmVv 207 (417)
T PF06431_consen 136 NFDDVILEILKCLVE--------NIPKKRYWLFKGPVNSGKTTLAAALLDLCGGKSLNVNCPPDKLNFELGCAIDQFMVV 207 (417)
T ss_dssp THHHHHHHHHHHHHH--------TBTTB-EEEEE-STTSSHHHHHHHHHHHH-EEEE-TSS-TTTHHHHHCCCTT-SEEE
T ss_pred chHHHHHHHHHHHhc--------CCCcceeEEEecCcCCchHHHHHHHHHhcCCceeecCCChhhcchhhheeeceEEEE
Confidence 344455555555444 46889999999999999999999999988876666665532100000 001
Q ss_pred HHHhhhc--------ccchhhHHHHHHHHhcCcccC-----CCCce-----EEEEecCCCCCCChhhhccCceeEEEEcC
Q 035603 273 LVDISSK--------KKKSNVTLSGLLNCIGGLWST-----CGGER-----IIVFTTNHVDKLDPALIRRGRMDKHIEMP 334 (431)
Q Consensus 273 ~~~~~~~--------~~~~~~~~s~lL~~ldg~~~~-----~~~~~-----ivI~TTN~~~~Ld~AllRpGRfd~~I~~~ 334 (431)
|.+..+. .+..-..+..|-+.|||...- ....+ --|.|.|. ..||..+.- ||-..+.|.
T Consensus 208 FEDVKGq~~~~~~Lp~G~G~~NLDNLRD~LDG~V~VNLErKH~NK~sQiFPPgIvTmNe-Y~iP~Tv~v--Rf~~~~~F~ 284 (417)
T PF06431_consen 208 FEDVKGQPSDNKDLPPGQGMNNLDNLRDYLDGAVKVNLERKHQNKRSQIFPPGIVTMNE-YKIPQTVKV--RFCKVLDFR 284 (417)
T ss_dssp EEEE--SSTTTTT----SHHHHHHTTHHHHH-SS-EEEECSSSEEEEE----EEEEESS--B--HHHHT--TEEEEEE--
T ss_pred EEecCCCcCCCCCCCCCCCcccchhhhhhccCceeechhhhhcccccccCCCceEeecc-ccCCcceee--eeEeeEecc
Confidence 1111111 222334566677788874221 11111 24778887 478888887 999998886
Q ss_pred C
Q 035603 335 Y 335 (431)
Q Consensus 335 ~ 335 (431)
.
T Consensus 285 ~ 285 (417)
T PF06431_consen 285 P 285 (417)
T ss_dssp -
T ss_pred c
Confidence 4
No 464
>COG3378 Phage associated DNA primase [General function prediction only]
Probab=96.01 E-value=0.029 Score=59.27 Aligned_cols=55 Identities=24% Similarity=0.399 Sum_probs=38.5
Q ss_pred cccccc-ChhhHHHHHHHHHHHHhCHHHHHHhCCCCCceeEEeCCCCCcHHHHHHHHHHHcCC
Q 035603 192 FDTLAM-ASKKKEAIKKDLIKFTEGKEYYAKIGKAWKRGYLLFGPPGTGKSTMIAAMANCLNY 253 (431)
Q Consensus 192 f~~l~g-~~~~k~~i~~~l~~~~~~~~~~~~~g~~~~rg~LL~GPPGtGKTsla~aiA~~l~~ 253 (431)
++++.+ +.++..-+.+.+-.-+.. .+.+...++|+||-|+||++++..|.+-+|.
T Consensus 201 L~~~~~~d~el~~ll~~i~g~~l~g-------~~~~~k~~~l~G~G~nGKstf~~li~~llG~ 256 (517)
T COG3378 201 LDRVAGGDPELRNLLQRIIGASLTG-------RVSEQKLFWLYGPGGNGKSTFVDLISNLLGR 256 (517)
T ss_pred HHHhhcCCHHHHHHHHHHHhheecC-------cccceeEEEEEcCCCCChHHHHHHHHHHhcc
Confidence 556665 555555544433322222 1457789999999999999999999999885
No 465
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=95.94 E-value=0.0074 Score=53.84 Aligned_cols=26 Identities=31% Similarity=0.565 Sum_probs=22.6
Q ss_pred CceeEEeCCCCCcHHHHHHHHHHHcC
Q 035603 227 KRGYLLFGPPGTGKSTMIAAMANCLN 252 (431)
Q Consensus 227 ~rg~LL~GPPGtGKTsla~aiA~~l~ 252 (431)
..-+.+.||||+|||+++.-+|..|.
T Consensus 5 ~mki~ITG~PGvGKtTl~~ki~e~L~ 30 (179)
T COG1618 5 AMKIFITGRPGVGKTTLVLKIAEKLR 30 (179)
T ss_pred ceEEEEeCCCCccHHHHHHHHHHHHH
Confidence 34689999999999999999998764
No 466
>TIGR00376 DNA helicase, putative. The gene product may represent a DNA helicase. Eukaryotic members of this family have been characterized as binding certain single-stranded G-rich DNA sequences (GGGGT and GGGCT). A number of related proteins are characterized as helicases.
Probab=95.94 E-value=0.0069 Score=66.09 Aligned_cols=34 Identities=29% Similarity=0.528 Sum_probs=25.7
Q ss_pred ceeEEeCCCCCcHHHHHHHHHHHc---CCCeEEeccc
Q 035603 228 RGYLLFGPPGTGKSTMIAAMANCL---NYDVYDLELT 261 (431)
Q Consensus 228 rg~LL~GPPGtGKTsla~aiA~~l---~~~i~~l~~~ 261 (431)
.-+|++||||||||+++.++...+ |..+..+..+
T Consensus 174 ~~~lI~GpPGTGKT~t~~~ii~~~~~~g~~VLv~a~s 210 (637)
T TIGR00376 174 DLFLIHGPPGTGKTRTLVELIRQLVKRGLRVLVTAPS 210 (637)
T ss_pred CeEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEEcCc
Confidence 357899999999999888877653 6666665544
No 467
>PRK13894 conjugal transfer ATPase TrbB; Provisional
Probab=95.93 E-value=0.0088 Score=59.75 Aligned_cols=25 Identities=36% Similarity=0.695 Sum_probs=22.8
Q ss_pred CceeEEeCCCCCcHHHHHHHHHHHc
Q 035603 227 KRGYLLFGPPGTGKSTMIAAMANCL 251 (431)
Q Consensus 227 ~rg~LL~GPPGtGKTsla~aiA~~l 251 (431)
++.+++.||+|+|||+++++++.+.
T Consensus 148 ~~~ilI~G~tGSGKTTll~aL~~~~ 172 (319)
T PRK13894 148 HRNILVIGGTGSGKTTLVNAIINEM 172 (319)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHhh
Confidence 5789999999999999999999874
No 468
>PF00493 MCM: MCM2/3/5 family This family extends the MCM domain of Prosite.; InterPro: IPR001208 MCM proteins are DNA-dependent ATPases required for the initiation of eukaryotic DNA replication [, , ]. In eukaryotes there is a family of six proteins, MCM2 to MCM7. They were first identified in yeast where most of them have a direct role in the initiation of chromosomal DNA replication by interacting directly with autonomously replicating sequences (ARS). They were thus called minichromosome maintenance proteins, MCM proteins []. This family is also present in the archebacteria in 1 to 4 copies. Methanocaldococcus jannaschii (Methanococcus jannaschii) has four members, MJ0363, MJ0961, MJ1489 and MJECL13. The "MCM motif" contains Walker-A and Walker-B type nucleotide binding motifs. The diagnostic sequence defining the MCMs is IDEFDKM. Only Mcm2 (aka Cdc19 or Nda1) has been subjected to mutational analysis in this region, and most mutations abolish its activity []. The presence of a putative ATP-binding domain implies that these proteins may be involved in an ATP-consuming step in the initiation of DNA replication in eukaryotes. The MCM proteins bind together in a large complex []. Within this complex, individual subunits associate with different affinities, and there is a tightly associated core of Mcm4 (Cdc21), Mcm6 (Mis5) and Mcm7 []. This core complex in human MCMs has been associated with helicase activity in vitro [], leading to the suggestion that the MCM proteins are the eukaryotic replicative helicase. Schizosaccharomyces pombe (Fission yeast) MCMs, like those in metazoans, are found in the nucleus throughout the cell cycle. This is in contrast to the Saccharomyces cerevisiae (Baker's yeast) in which MCM proteins move in and out of the nucleus during each cell cycle. The assembly of the MCM complex in S. pombe is required for MCM localisation, ensuring that only intact MCM complexes remain in the nucleus [].; GO: 0003677 DNA binding, 0005524 ATP binding, 0006260 DNA replication; PDB: 3F8T_A 3F9V_A.
Probab=95.93 E-value=0.0069 Score=60.84 Aligned_cols=121 Identities=23% Similarity=0.224 Sum_probs=63.0
Q ss_pred ceeEEeCCCCCcHHHHHHHHHHHcCCCeEEeccc----Cc-----CCh---H-HHH-HHHHHhhhc-------ccchhhH
Q 035603 228 RGYLLFGPPGTGKSTMIAAMANCLNYDVYDLELT----SV-----ENN---N-ELR-SLLVDISSK-------KKKSNVT 286 (431)
Q Consensus 228 rg~LL~GPPGtGKTsla~aiA~~l~~~i~~l~~~----~~-----~~~---~-~l~-~l~~~~~~~-------~~~~~~~ 286 (431)
-.+||.|.||||||.|.+.+++.....++..-.+ .+ .+. + -+. ..+..+.+. +......
T Consensus 58 ihiLlvGdpg~gKS~ll~~~~~~~pr~v~~~g~~~s~~gLta~~~~d~~~~~~~leaGalvlad~GiccIDe~dk~~~~~ 137 (331)
T PF00493_consen 58 IHILLVGDPGTGKSQLLKYVAKLAPRSVYTSGKGSSAAGLTASVSRDPVTGEWVLEAGALVLADGGICCIDEFDKMKEDD 137 (331)
T ss_dssp --EEEECSCHHCHHHHHHCCCCT-SSEEEEECCGSTCCCCCEEECCCGGTSSECEEE-HHHHCTTSEEEECTTTT--CHH
T ss_pred cceeeccchhhhHHHHHHHHHhhCCceEEECCCCcccCCccceeccccccceeEEeCCchhcccCceeeecccccccchH
Confidence 3689999999999999998877666555543111 11 000 0 000 011112111 2333445
Q ss_pred HHHHHHHhcCc---------ccCCCCceEEEEecCCCC-------------CCChhhhccCceeEEEEc-CCCCHHHHHH
Q 035603 287 LSGLLNCIGGL---------WSTCGGERIIVFTTNHVD-------------KLDPALIRRGRMDKHIEM-PYCCFEAFKV 343 (431)
Q Consensus 287 ~s~lL~~ldg~---------~~~~~~~~ivI~TTN~~~-------------~Ld~AllRpGRfd~~I~~-~~p~~~~r~~ 343 (431)
...|+.+|+.- ...-..+.-|++++|... .++++|+. |||..+.+ ..|+.+.=..
T Consensus 138 ~~~l~eaMEqq~isi~kagi~~~l~ar~svlaa~NP~~g~~~~~~~~~~ni~l~~~LLS--RFDLif~l~D~~d~~~D~~ 215 (331)
T PF00493_consen 138 RDALHEAMEQQTISIAKAGIVTTLNARCSVLAAANPKFGRYDPNKSLSENINLPPPLLS--RFDLIFLLRDKPDEEEDER 215 (331)
T ss_dssp HHHHHHHHHCSCEEECTSSSEEEEE---EEEEEE--TT--S-TTS-CGCCT-S-CCCHC--C-SEEECC--TTT-HHHHH
T ss_pred HHHHHHHHHcCeeccchhhhcccccchhhhHHHHhhhhhhcchhhhhHHhcccchhhHh--hcCEEEEeccccccccccc
Confidence 77778877641 111112356899999765 58899999 99998775 5667665555
Q ss_pred HHHHhhc
Q 035603 344 LAKNYLE 350 (431)
Q Consensus 344 i~~~~l~ 350 (431)
+.++.+.
T Consensus 216 la~~il~ 222 (331)
T PF00493_consen 216 LAEHILD 222 (331)
T ss_dssp HHHHHHT
T ss_pred cceEEEe
Confidence 6665554
No 469
>cd01673 dNK Deoxyribonucleoside kinase (dNK) catalyzes the phosphorylation of deoxyribonucleosides to yield corresponding monophosphates (dNMPs). This family consists of various deoxynucleoside kinases including deoxyribo- cytidine (EC 2.7.1.74), guanosine (EC 2.7.1.113), adenosine (EC 2.7.1.76), and thymidine (EC 2.7.1.21) kinases. They are key enzymes in the salvage of deoxyribonucleosides originating from extra- or intracellular breakdown of DNA.
Probab=95.91 E-value=0.0068 Score=55.56 Aligned_cols=27 Identities=37% Similarity=0.586 Sum_probs=23.6
Q ss_pred eEEeCCCCCcHHHHHHHHHHHcCCCeE
Q 035603 230 YLLFGPPGTGKSTMIAAMANCLNYDVY 256 (431)
Q Consensus 230 ~LL~GPPGtGKTsla~aiA~~l~~~i~ 256 (431)
|.+.|++||||||+++.|++.+++.++
T Consensus 2 I~ieG~~GsGKSTl~~~L~~~~~~~~~ 28 (193)
T cd01673 2 IVVEGNIGAGKSTLAKELAEHLGYEVV 28 (193)
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCccc
Confidence 568999999999999999999887544
No 470
>PF08477 Miro: Miro-like protein; InterPro: IPR013684 Mitochondrial Rho proteins (Miro-1, Q8IXI2 from SWISSPROT and Miro-2, Q8IXI1 from SWISSPROT) are atypical Rho GTPases. They have a unique domain organisation, with tandem GTP-binding domains and two EF hand domains (IPR002048 from INTERPRO), that may bind calcium. They are also larger than classical small GTPases. It has been proposed that they are involved in mitochondrial homeostasis and apoptosis []. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction, 0005622 intracellular; PDB: 2IWR_A 2BMJ_A 3IHW_A 2ZEJ_A 3D6T_B 3DPU_A.
Probab=95.89 E-value=0.007 Score=50.47 Aligned_cols=23 Identities=22% Similarity=0.465 Sum_probs=19.9
Q ss_pred eEEeCCCCCcHHHHHHHHHHHcC
Q 035603 230 YLLFGPPGTGKSTMIAAMANCLN 252 (431)
Q Consensus 230 ~LL~GPPGtGKTsla~aiA~~l~ 252 (431)
+++.|++|+|||+|++.+++...
T Consensus 2 I~V~G~~g~GKTsLi~~l~~~~~ 24 (119)
T PF08477_consen 2 IVVLGDSGVGKTSLIRRLCGGEF 24 (119)
T ss_dssp EEEECSTTSSHHHHHHHHHHSS-
T ss_pred EEEECcCCCCHHHHHHHHhcCCC
Confidence 68899999999999999997543
No 471
>PF03029 ATP_bind_1: Conserved hypothetical ATP binding protein; InterPro: IPR004130 Members of this family are found in a range of archaea and eukaryotes and have hypothesised ATP binding activity.; GO: 0000166 nucleotide binding; PDB: 1YR7_A 1YRA_B 1YR8_A 1YR6_A 1YR9_A 1YRB_A 2OXR_A.
Probab=95.88 E-value=0.0061 Score=58.36 Aligned_cols=29 Identities=38% Similarity=0.753 Sum_probs=21.1
Q ss_pred EeCCCCCcHHHHHHHHHHHcC---CCeEEecc
Q 035603 232 LFGPPGTGKSTMIAAMANCLN---YDVYDLEL 260 (431)
Q Consensus 232 L~GPPGtGKTsla~aiA~~l~---~~i~~l~~ 260 (431)
+.||||+||||+++++...+. .+++.+|+
T Consensus 1 ViGpaGSGKTT~~~~~~~~~~~~~~~~~~vNL 32 (238)
T PF03029_consen 1 VIGPAGSGKTTFCKGLSEWLESNGRDVYIVNL 32 (238)
T ss_dssp -EESTTSSHHHHHHHHHHHHTTT-S-EEEEE-
T ss_pred CCCCCCCCHHHHHHHHHHHHHhccCCceEEEc
Confidence 369999999999999998764 45555443
No 472
>PF13479 AAA_24: AAA domain
Probab=95.88 E-value=0.0044 Score=58.20 Aligned_cols=19 Identities=47% Similarity=1.088 Sum_probs=17.6
Q ss_pred eeEEeCCCCCcHHHHHHHH
Q 035603 229 GYLLFGPPGTGKSTMIAAM 247 (431)
Q Consensus 229 g~LL~GPPGtGKTsla~ai 247 (431)
-+|+|||||+|||+++..+
T Consensus 5 ~~lIyG~~G~GKTt~a~~~ 23 (213)
T PF13479_consen 5 KILIYGPPGSGKTTLAASL 23 (213)
T ss_pred EEEEECCCCCCHHHHHHhC
Confidence 5899999999999999887
No 473
>TIGR01526 nadR_NMN_Atrans nicotinamide-nucleotide adenylyltransferase, NadR type. E. coli NadR has also been found to regulate the import of its substrate, nicotinamide ribonucleotide, but it is not known if the other members of this model share that activity.
Probab=95.88 E-value=0.0083 Score=60.12 Aligned_cols=30 Identities=27% Similarity=0.353 Sum_probs=27.1
Q ss_pred ceeEEeCCCCCcHHHHHHHHHHHcCCCeEE
Q 035603 228 RGYLLFGPPGTGKSTMIAAMANCLNYDVYD 257 (431)
Q Consensus 228 rg~LL~GPPGtGKTsla~aiA~~l~~~i~~ 257 (431)
+.+.|.|+||||||+|+++|++.++.+++.
T Consensus 163 ~~~~~~G~~~~gkstl~~~l~~~~~~~~v~ 192 (325)
T TIGR01526 163 KTVAILGGESTGKSTLVNKLAAVFNTTSAW 192 (325)
T ss_pred cEEEEECCCCCCHHHHHHHHHHhhCCCEEe
Confidence 478999999999999999999999988743
No 474
>TIGR00455 apsK adenylylsulfate kinase (apsK). Important residue (active site in E.coli) is residue 100 of the seed alignment.
Probab=95.87 E-value=0.011 Score=53.99 Aligned_cols=33 Identities=39% Similarity=0.539 Sum_probs=26.1
Q ss_pred CceeEEeCCCCCcHHHHHHHHHHHcC---CCeEEec
Q 035603 227 KRGYLLFGPPGTGKSTMIAAMANCLN---YDVYDLE 259 (431)
Q Consensus 227 ~rg~LL~GPPGtGKTsla~aiA~~l~---~~i~~l~ 259 (431)
+.-+.+.|+||+|||+++++++..+. ...+.++
T Consensus 18 ~~~i~i~G~~GsGKstla~~l~~~l~~~~~~~~~l~ 53 (184)
T TIGR00455 18 GVVIWLTGLSGSGKSTIANALEKKLESKGYRVYVLD 53 (184)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEEC
Confidence 45678999999999999999999873 3444444
No 475
>PRK08099 bifunctional DNA-binding transcriptional repressor/ NMN adenylyltransferase; Provisional
Probab=95.87 E-value=0.008 Score=61.88 Aligned_cols=30 Identities=30% Similarity=0.436 Sum_probs=26.6
Q ss_pred CceeEEeCCCCCcHHHHHHHHHHHcCCCeE
Q 035603 227 KRGYLLFGPPGTGKSTMIAAMANCLNYDVY 256 (431)
Q Consensus 227 ~rg~LL~GPPGtGKTsla~aiA~~l~~~i~ 256 (431)
.+-+.+.|++|||||||+++||..+|...+
T Consensus 219 ~~~IvI~G~~gsGKTTL~~~La~~~g~~~v 248 (399)
T PRK08099 219 VRTVAILGGESSGKSTLVNKLANIFNTTSA 248 (399)
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHHhCCCee
Confidence 467899999999999999999999987643
No 476
>TIGR00959 ffh signal recognition particle protein. This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.
Probab=95.87 E-value=0.014 Score=60.53 Aligned_cols=64 Identities=19% Similarity=0.231 Sum_probs=39.1
Q ss_pred hhHHHHHHHHHHHHhCHHHHHHhCCCCCceeEEeCCCCCcHHHHHHHHHHHc----CCCeEEecccCc
Q 035603 200 KKKEAIKKDLIKFTEGKEYYAKIGKAWKRGYLLFGPPGTGKSTMIAAMANCL----NYDVYDLELTSV 263 (431)
Q Consensus 200 ~~k~~i~~~l~~~~~~~~~~~~~g~~~~rg~LL~GPPGtGKTsla~aiA~~l----~~~i~~l~~~~~ 263 (431)
.+.+.+.+.+...+.....--......|.-+++.||||+|||+++..+|..+ |..+..+++...
T Consensus 72 ~~~~~v~~eL~~~l~~~~~~~~~~~~~p~vi~~vG~~GsGKTTtaakLA~~l~~~~g~kV~lV~~D~~ 139 (428)
T TIGR00959 72 QFIKIVHEELVAILGGENASLNLAKKPPTVILMVGLQGSGKTTTCGKLAYYLKKKQGKKVLLVACDLY 139 (428)
T ss_pred HHHHHHHHHHHHHhCCCCcccccCCCCCEEEEEECCCCCcHHHHHHHHHHHHHHhCCCeEEEEecccc
Confidence 3455555555555543211011111235678999999999999999888764 456666665543
No 477
>COG1241 MCM2 Predicted ATPase involved in replication control, Cdc46/Mcm family [DNA replication, recombination, and repair]
Probab=95.86 E-value=0.0083 Score=65.15 Aligned_cols=150 Identities=19% Similarity=0.174 Sum_probs=79.8
Q ss_pred cccccChhhHHHHHHHHHHHHhCHHHHHHhCCCCCc---eeEEeCCCCCcHHHHHHHHHHHcCCCeEEeccc----CcC-
Q 035603 193 DTLAMASKKKEAIKKDLIKFTEGKEYYAKIGKAWKR---GYLLFGPPGTGKSTMIAAMANCLNYDVYDLELT----SVE- 264 (431)
Q Consensus 193 ~~l~g~~~~k~~i~~~l~~~~~~~~~~~~~g~~~~r---g~LL~GPPGtGKTsla~aiA~~l~~~i~~l~~~----~~~- 264 (431)
-+|.|.+++|+.|. +..|-..+.... -|. +-| .+||.|.||||||.|.+.+++-+-..+|.---+ ++.
T Consensus 286 PsIyG~e~VKkAil--LqLfgGv~k~~~-~g~-~iRGDInILLvGDPgtaKSqlLk~v~~~aPr~vytsgkgss~~GLTA 361 (682)
T COG1241 286 PSIYGHEDVKKAIL--LQLFGGVKKNLP-DGT-RIRGDIHILLVGDPGTAKSQLLKYVAKLAPRGVYTSGKGSSAAGLTA 361 (682)
T ss_pred ccccCcHHHHHHHH--HHhcCCCcccCC-CCc-ccccceeEEEcCCCchhHHHHHHHHHhhCCceEEEccccccccCcee
Confidence 35677777777763 222222111110 011 112 489999999999999999999888777653111 110
Q ss_pred --ChHHH-HHHHHHhhhc-------------ccchhhHHHHHHHHhcC---------cccCCCCceEEEEecCCCC----
Q 035603 265 --NNNEL-RSLLVDISSK-------------KKKSNVTLSGLLNCIGG---------LWSTCGGERIIVFTTNHVD---- 315 (431)
Q Consensus 265 --~~~~l-~~l~~~~~~~-------------~~~~~~~~s~lL~~ldg---------~~~~~~~~~ivI~TTN~~~---- 315 (431)
..+.. .+...++... +.......+.+..+|+. +...-+...-|++++|.+.
T Consensus 362 av~rd~~tge~~LeaGALVlAD~Gv~cIDEfdKm~~~dr~aihEaMEQQtIsIaKAGI~atLnARcsvLAAaNP~~Gryd 441 (682)
T COG1241 362 AVVRDKVTGEWVLEAGALVLADGGVCCIDEFDKMNEEDRVAIHEAMEQQTISIAKAGITATLNARCSVLAAANPKFGRYD 441 (682)
T ss_pred EEEEccCCCeEEEeCCEEEEecCCEEEEEeccCCChHHHHHHHHHHHhcEeeecccceeeecchhhhhhhhhCCCCCcCC
Confidence 00000 1111111111 23344555666666643 1111122334788888664
Q ss_pred ---------CCChhhhccCceeEEEEc-CCCCHHHHHHHHHHh
Q 035603 316 ---------KLDPALIRRGRMDKHIEM-PYCCFEAFKVLAKNY 348 (431)
Q Consensus 316 ---------~Ld~AllRpGRfd~~I~~-~~p~~~~r~~i~~~~ 348 (431)
+|+++|+. |||...-+ .-|+.+.=+.++.+.
T Consensus 442 ~~~~~~enI~l~~~lLS--RFDLifvl~D~~d~~~D~~ia~hi 482 (682)
T COG1241 442 PKKTVAENINLPAPLLS--RFDLIFVLKDDPDEEKDEEIAEHI 482 (682)
T ss_pred CCCCHHHhcCCChhHHh--hCCeeEEecCCCCccchHHHHHHH
Confidence 47899999 99988654 346654333344333
No 478
>TIGR02533 type_II_gspE general secretory pathway protein E. This family describes GspE, the E protein of the type II secretion system, also called the main terminal branch of the general secretion pathway. This model separates GspE from the PilB protein of type IV pilin biosynthesis.
Probab=95.85 E-value=0.012 Score=62.17 Aligned_cols=55 Identities=25% Similarity=0.440 Sum_probs=39.4
Q ss_pred CCCccccccChhhHHHHHHHHHHHHhCHHHHHHhCCCCCce-eEEeCCCCCcHHHHHHHHHHHcCC---CeEEe
Q 035603 189 PATFDTLAMASKKKEAIKKDLIKFTEGKEYYAKIGKAWKRG-YLLFGPPGTGKSTMIAAMANCLNY---DVYDL 258 (431)
Q Consensus 189 p~~f~~l~g~~~~k~~i~~~l~~~~~~~~~~~~~g~~~~rg-~LL~GPPGtGKTsla~aiA~~l~~---~i~~l 258 (431)
+.+++++++.++..+.+...+ . .+.| +|+.||+|+||||+..++-++++. .++.+
T Consensus 218 ~~~l~~Lg~~~~~~~~l~~~~----~-----------~~~GlilitGptGSGKTTtL~a~L~~l~~~~~~iiTi 276 (486)
T TIGR02533 218 RLDLETLGMSPELLSRFERLI----R-----------RPHGIILVTGPTGSGKTTTLYAALSRLNTPERNILTV 276 (486)
T ss_pred CCCHHHcCCCHHHHHHHHHHH----h-----------cCCCEEEEEcCCCCCHHHHHHHHHhccCCCCCcEEEE
Confidence 467899988887766654422 1 2356 589999999999999988877653 35544
No 479
>PRK14731 coaE dephospho-CoA kinase; Provisional
Probab=95.82 E-value=0.01 Score=55.45 Aligned_cols=32 Identities=22% Similarity=0.325 Sum_probs=27.2
Q ss_pred CceeEEeCCCCCcHHHHHHHHHHHcCCCeEEec
Q 035603 227 KRGYLLFGPPGTGKSTMIAAMANCLNYDVYDLE 259 (431)
Q Consensus 227 ~rg~LL~GPPGtGKTsla~aiA~~l~~~i~~l~ 259 (431)
+.-+-|+|++|||||++++.++. +|+++++.|
T Consensus 5 ~~~igitG~igsGKSt~~~~l~~-~g~~v~d~D 36 (208)
T PRK14731 5 PFLVGVTGGIGSGKSTVCRFLAE-MGCELFEAD 36 (208)
T ss_pred CEEEEEECCCCCCHHHHHHHHHH-CCCeEEecc
Confidence 34466899999999999999996 898888766
No 480
>cd01122 GP4d_helicase GP4d_helicase is a homohexameric 5'-3' helicases. Helicases couple NTP hydrolysis to the unwinding of nucleic acid duplexes into their component strands.
Probab=95.81 E-value=0.01 Score=57.47 Aligned_cols=40 Identities=25% Similarity=0.234 Sum_probs=31.6
Q ss_pred CCCCCceeEEeCCCCCcHHHHHHHHHHHc----CCCeEEecccC
Q 035603 223 GKAWKRGYLLFGPPGTGKSTMIAAMANCL----NYDVYDLELTS 262 (431)
Q Consensus 223 g~~~~rg~LL~GPPGtGKTsla~aiA~~l----~~~i~~l~~~~ 262 (431)
|++...-++|.||||+|||+++..+|..+ |.+++.+++..
T Consensus 26 G~~~g~~~~i~g~~G~GKT~l~~~~~~~~~~~~g~~vl~iS~E~ 69 (271)
T cd01122 26 GLRKGELIILTAGTGVGKTTFLREYALDLITQHGVRVGTISLEE 69 (271)
T ss_pred EEcCCcEEEEEcCCCCCHHHHHHHHHHHHHHhcCceEEEEEccc
Confidence 56666778999999999999999887653 66777776554
No 481
>PRK12608 transcription termination factor Rho; Provisional
Probab=95.75 E-value=0.017 Score=58.53 Aligned_cols=24 Identities=25% Similarity=0.544 Sum_probs=21.5
Q ss_pred eEEeCCCCCcHHHHHHHHHHHcCC
Q 035603 230 YLLFGPPGTGKSTMIAAMANCLNY 253 (431)
Q Consensus 230 ~LL~GPPGtGKTsla~aiA~~l~~ 253 (431)
.|+.||||||||+|++.+|+.+..
T Consensus 136 ~LIvG~pGtGKTTLl~~la~~i~~ 159 (380)
T PRK12608 136 GLIVAPPRAGKTVLLQQIAAAVAA 159 (380)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHh
Confidence 599999999999999999997743
No 482
>cd01918 HprK_C HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of Ser-46 of HPr and its dephosphorylation by phosphorolysis. The latter reaction uses inorganic phosphate as substrate and produces pyrophosphate. Phosphoenolpyruvate carboxykinase (PEPCK) and the C-terminal catalytic domain of HprK/P are structurally similar with conserved active site residues suggesting these two phosphotransferases have related functions. The HprK/P N-terminal domain is structurally similar to the N-terminal domains of the MurE and MurF amino acid ligases.
Probab=95.74 E-value=0.0085 Score=53.08 Aligned_cols=24 Identities=33% Similarity=0.563 Sum_probs=21.8
Q ss_pred CceeEEeCCCCCcHHHHHHHHHHH
Q 035603 227 KRGYLLFGPPGTGKSTMIAAMANC 250 (431)
Q Consensus 227 ~rg~LL~GPPGtGKTsla~aiA~~ 250 (431)
.+|+||.||+|+|||+++.++...
T Consensus 14 g~gvLi~G~sG~GKStlal~L~~~ 37 (149)
T cd01918 14 GIGVLITGPSGIGKSELALELIKR 37 (149)
T ss_pred CEEEEEEcCCCCCHHHHHHHHHHc
Confidence 579999999999999999988775
No 483
>cd00820 PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPCK), a critical gluconeogenic enzyme, catalyzes the first committed step in the diversion of tricarboxylic acid cycle intermediates toward gluconeogenesis. It catalyzes the reversible decarboxylation and phosphorylation of oxaloacetate to yield phosphoenolpyruvate and carbon dioxide, using a nucleotide molecule (ATP or GTP) for the phosphoryl transfer, and has a strict requirement for divalent metal ions for activity. PEPCK's separate into two phylogenetic groups based on their nucleotide substrate specificity (the ATP-, and GTP-dependent groups).HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of HPr and its dephosphorylation by phosphorolysis. PEPCK and the C-terminal catalytic domain of HprK/P are structural
Probab=95.73 E-value=0.0082 Score=50.14 Aligned_cols=23 Identities=30% Similarity=0.488 Sum_probs=20.5
Q ss_pred CCceeEEeCCCCCcHHHHHHHHH
Q 035603 226 WKRGYLLFGPPGTGKSTMIAAMA 248 (431)
Q Consensus 226 ~~rg~LL~GPPGtGKTsla~aiA 248 (431)
....+.|.||+|+|||+|++++.
T Consensus 14 ~ge~v~I~GpSGsGKSTLl~~l~ 36 (107)
T cd00820 14 GKVGVLITGDSGIGKTELALELI 36 (107)
T ss_pred CCEEEEEEcCCCCCHHHHHHHhh
Confidence 34678999999999999999987
No 484
>PF00005 ABC_tran: ABC transporter This structure is on hold until Dec 1999; InterPro: IPR003439 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). On the basis of sequence similarities a family of related ATP-binding proteins has been characterised [, , , , ]. The proteins belonging to this family also contain one or two copies of the 'A' consensus sequence [] or the 'P-loop' [] (see IPR001687 from INTERPRO).; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NHB_A 3NH9_A 3NHA_A 3NH6_A 1VCI_A 1V43_A 2YZ2_B 2PMK_A 2FFA_A 1XEF_D ....
Probab=95.70 E-value=0.0046 Score=53.21 Aligned_cols=29 Identities=34% Similarity=0.433 Sum_probs=24.5
Q ss_pred CCCceeEEeCCCCCcHHHHHHHHHHHcCC
Q 035603 225 AWKRGYLLFGPPGTGKSTMIAAMANCLNY 253 (431)
Q Consensus 225 ~~~rg~LL~GPPGtGKTsla~aiA~~l~~ 253 (431)
+...-+.+.||+|+|||+|+++|++....
T Consensus 9 ~~g~~~~i~G~nGsGKStLl~~l~g~~~~ 37 (137)
T PF00005_consen 9 KPGEIVAIVGPNGSGKSTLLKALAGLLPP 37 (137)
T ss_dssp ETTSEEEEEESTTSSHHHHHHHHTTSSHE
T ss_pred cCCCEEEEEccCCCccccceeeecccccc
Confidence 34567899999999999999999997653
No 485
>PF04851 ResIII: Type III restriction enzyme, res subunit; InterPro: IPR006935 This entry represents a domain found in the N terminus of several proteins, including helicases, the R subunit (HsdR) of type I restriction endonucleases (3.1.21.3 from EC), the Res subunit of type III endonucleases (3.1.21.5 from EC), and the B subunit of excinuclease ABC (uvrB) [, , ].; GO: 0003677 DNA binding, 0005524 ATP binding, 0016787 hydrolase activity; PDB: 2Y3T_B 2W74_B 2FWR_A 2FZ4_A 3UWX_B 3H1T_A 3B6E_A 2FDC_A 1D9Z_A 1T5L_B ....
Probab=95.70 E-value=0.024 Score=50.62 Aligned_cols=34 Identities=29% Similarity=0.336 Sum_probs=27.5
Q ss_pred CCceeEEeCCCCCcHHHHHHHHHHHcCCCeEEec
Q 035603 226 WKRGYLLFGPPGTGKSTMIAAMANCLNYDVYDLE 259 (431)
Q Consensus 226 ~~rg~LL~GPPGtGKTsla~aiA~~l~~~i~~l~ 259 (431)
..+.+||.+|+|+|||.++-.++.++..+++.+-
T Consensus 24 ~~~~~ll~~~tGsGKT~~~~~~~~~l~~~~l~~~ 57 (184)
T PF04851_consen 24 EERRVLLNAPTGSGKTIIALALILELARKVLIVA 57 (184)
T ss_dssp GCSEEEEEESTTSSHHHHHHHHHHHHHCEEEEEE
T ss_pred CCCCEEEEECCCCCcChhhhhhhhccccceeEec
Confidence 3578999999999999999987777766666553
No 486
>PRK13477 bifunctional pantoate ligase/cytidylate kinase; Provisional
Probab=95.68 E-value=0.0094 Score=63.07 Aligned_cols=30 Identities=37% Similarity=0.401 Sum_probs=25.8
Q ss_pred ceeEEeCCCCCcHHHHHHHHHHHcCCCeEE
Q 035603 228 RGYLLFGPPGTGKSTMIAAMANCLNYDVYD 257 (431)
Q Consensus 228 rg~LL~GPPGtGKTsla~aiA~~l~~~i~~ 257 (431)
.-+.+.||+||||||+++.||..+|+.+++
T Consensus 285 ~ii~i~G~sgsGKst~a~~la~~l~~~~~d 314 (512)
T PRK13477 285 PIIAIDGPAGAGKSTVTRAVAKKLGLLYLD 314 (512)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHcCCeEec
Confidence 346788999999999999999999976654
No 487
>COG2805 PilT Tfp pilus assembly protein, pilus retraction ATPase PilT [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=95.67 E-value=0.015 Score=56.88 Aligned_cols=48 Identities=35% Similarity=0.578 Sum_probs=36.5
Q ss_pred cCCCCccccccChhhHHHHHHHHHHHHhCHHHHHHhCCCCCcee-EEeCCCCCcHHHHHHHHHHHcCC
Q 035603 187 EHPATFDTLAMASKKKEAIKKDLIKFTEGKEYYAKIGKAWKRGY-LLFGPPGTGKSTMIAAMANCLNY 253 (431)
Q Consensus 187 ~~p~~f~~l~g~~~~k~~i~~~l~~~~~~~~~~~~~g~~~~rg~-LL~GPPGtGKTsla~aiA~~l~~ 253 (431)
.++.+|+.++.++-+.+ +. ..++|+ |..||.|+|||+...||-.++|.
T Consensus 103 ~~i~~~e~LglP~i~~~-~~------------------~~~~GLILVTGpTGSGKSTTlAamId~iN~ 151 (353)
T COG2805 103 SKIPTLEELGLPPIVRE-LA------------------ESPRGLILVTGPTGSGKSTTLAAMIDYINK 151 (353)
T ss_pred ccCCCHHHcCCCHHHHH-HH------------------hCCCceEEEeCCCCCcHHHHHHHHHHHHhc
Confidence 34578999988876555 32 135675 56799999999999999998875
No 488
>PRK07667 uridine kinase; Provisional
Probab=95.67 E-value=0.012 Score=54.24 Aligned_cols=35 Identities=14% Similarity=0.150 Sum_probs=26.8
Q ss_pred ceeEEeCCCCCcHHHHHHHHHHHcC---CCeEEecccC
Q 035603 228 RGYLLFGPPGTGKSTMIAAMANCLN---YDVYDLELTS 262 (431)
Q Consensus 228 rg~LL~GPPGtGKTsla~aiA~~l~---~~i~~l~~~~ 262 (431)
.-+.+.|+||+|||++++.|+..++ .++..++..+
T Consensus 18 ~iIgI~G~~gsGKStla~~L~~~l~~~~~~~~~i~~Dd 55 (193)
T PRK07667 18 FILGIDGLSRSGKTTFVANLKENMKQEGIPFHIFHIDD 55 (193)
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEEEcCc
Confidence 4567899999999999999999764 4555554444
No 489
>PF07931 CPT: Chloramphenicol phosphotransferase-like protein; InterPro: IPR012853 The members of this family are all similar to chloramphenicol 3-O phosphotransferase (CPT, Q56148 from SWISSPROT) expressed by Streptomyces venezuelae. Chloramphenicol (Cm) is a metabolite produced by this bacterium that can inhibit ribosomal peptidyl transferase activity and therefore protein production. By transferring a phosphate group to the C-3 hydroxyl group of Cm, CPT inactivates this potentially lethal metabolite [, ]. ; GO: 0005524 ATP binding, 0016740 transferase activity; PDB: 1QHX_A 1QHN_A 1GRR_A 1QHY_A 1QHS_A 1GRQ_A.
Probab=95.66 E-value=0.013 Score=53.41 Aligned_cols=34 Identities=26% Similarity=0.377 Sum_probs=27.7
Q ss_pred ceeEEeCCCCCcHHHHHHHHHHHcCCCeEEeccc
Q 035603 228 RGYLLFGPPGTGKSTMIAAMANCLNYDVYDLELT 261 (431)
Q Consensus 228 rg~LL~GPPGtGKTsla~aiA~~l~~~i~~l~~~ 261 (431)
+-|+|.|||-+||||+|++|...+.-+++.+...
T Consensus 2 ~iI~LNG~sSSGKSsia~~Lq~~~~~p~~~l~~D 35 (174)
T PF07931_consen 2 QIIILNGPSSSGKSSIARALQERLPEPWLHLSVD 35 (174)
T ss_dssp -EEEEEE-TTSSHHHHHHHHHHHSSS-EEEEEHH
T ss_pred eEEEEeCCCCCCHHHHHHHHHHhCcCCeEEEecC
Confidence 4589999999999999999999999988877543
No 490
>PRK03333 coaE dephospho-CoA kinase/protein folding accessory domain-containing protein; Provisional
Probab=95.66 E-value=0.02 Score=58.88 Aligned_cols=31 Identities=39% Similarity=0.408 Sum_probs=27.6
Q ss_pred eEEeCCCCCcHHHHHHHHHHHcCCCeEEeccc
Q 035603 230 YLLFGPPGTGKSTMIAAMANCLNYDVYDLELT 261 (431)
Q Consensus 230 ~LL~GPPGtGKTsla~aiA~~l~~~i~~l~~~ 261 (431)
+-|+|.+|||||++++.++. +|+++++.|--
T Consensus 4 IgltG~igsGKStv~~~L~~-~G~~vidaD~i 34 (395)
T PRK03333 4 IGLTGGIGAGKSTVAARLAE-LGAVVVDADVL 34 (395)
T ss_pred EEEECCCCCCHHHHHHHHHH-CCCeEEehHHH
Confidence 77999999999999999997 89999887643
No 491
>PRK10536 hypothetical protein; Provisional
Probab=95.66 E-value=0.015 Score=56.09 Aligned_cols=22 Identities=32% Similarity=0.259 Sum_probs=20.2
Q ss_pred eeEEeCCCCCcHHHHHHHHHHH
Q 035603 229 GYLLFGPPGTGKSTMIAAMANC 250 (431)
Q Consensus 229 g~LL~GPPGtGKTsla~aiA~~ 250 (431)
-+++.||+|||||+||.|+|.+
T Consensus 76 lV~i~G~aGTGKT~La~a~a~~ 97 (262)
T PRK10536 76 LIFATGEAGCGKTWISAAKAAE 97 (262)
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 6789999999999999999984
No 492
>cd00046 DEXDc DEAD-like helicases superfamily. A diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region.
Probab=95.65 E-value=0.0095 Score=49.95 Aligned_cols=25 Identities=32% Similarity=0.316 Sum_probs=21.3
Q ss_pred ceeEEeCCCCCcHHHHHHHHHHHcC
Q 035603 228 RGYLLFGPPGTGKSTMIAAMANCLN 252 (431)
Q Consensus 228 rg~LL~GPPGtGKTsla~aiA~~l~ 252 (431)
++++++||||+|||.++.+.+..+.
T Consensus 1 ~~~~i~~~~G~GKT~~~~~~~~~~~ 25 (144)
T cd00046 1 RDVLLAAPTGSGKTLAALLPILELL 25 (144)
T ss_pred CCEEEECCCCCchhHHHHHHHHHHH
Confidence 3689999999999999888877664
No 493
>TIGR00041 DTMP_kinase thymidylate kinase. Function: phosphorylation of DTMP to form DTDP in both de novo and salvage pathways of DTTP synthesis. Catalytic activity: ATP + thymidine 5'-phosphate = ADP + thymidine 5'-diphosphate.
Probab=95.64 E-value=0.0078 Score=55.16 Aligned_cols=25 Identities=24% Similarity=0.262 Sum_probs=22.1
Q ss_pred eeEEeCCCCCcHHHHHHHHHHHcCC
Q 035603 229 GYLLFGPPGTGKSTMIAAMANCLNY 253 (431)
Q Consensus 229 g~LL~GPPGtGKTsla~aiA~~l~~ 253 (431)
-+.|.|+||+||||+++.+|+.++.
T Consensus 5 ~IvieG~~GsGKsT~~~~L~~~l~~ 29 (195)
T TIGR00041 5 FIVIEGIDGAGKTTQANLLKKLLQE 29 (195)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHH
Confidence 4678999999999999999998843
No 494
>COG0324 MiaA tRNA delta(2)-isopentenylpyrophosphate transferase [Translation, ribosomal structure and biogenesis]
Probab=95.62 E-value=0.012 Score=58.05 Aligned_cols=37 Identities=24% Similarity=0.438 Sum_probs=33.0
Q ss_pred CceeEEeCCCCCcHHHHHHHHHHHcCCCeEEecccCc
Q 035603 227 KRGYLLFGPPGTGKSTMIAAMANCLNYDVYDLELTSV 263 (431)
Q Consensus 227 ~rg~LL~GPPGtGKTsla~aiA~~l~~~i~~l~~~~~ 263 (431)
++-+++.||.++|||-|+-++|..+|..++.+|...+
T Consensus 3 ~~~i~I~GPTAsGKT~lai~LAk~~~~eIIs~DSmQv 39 (308)
T COG0324 3 PKLIVIAGPTASGKTALAIALAKRLGGEIISLDSMQV 39 (308)
T ss_pred ccEEEEECCCCcCHHHHHHHHHHHcCCcEEecchhhh
Confidence 4678999999999999999999999999998876543
No 495
>PRK13973 thymidylate kinase; Provisional
Probab=95.61 E-value=0.021 Score=53.52 Aligned_cols=46 Identities=30% Similarity=0.369 Sum_probs=33.5
Q ss_pred eeEEeCCCCCcHHHHHHHHHHHc---CCCeEEecccC-cCChHHHHHHHH
Q 035603 229 GYLLFGPPGTGKSTMIAAMANCL---NYDVYDLELTS-VENNNELRSLLV 274 (431)
Q Consensus 229 g~LL~GPPGtGKTsla~aiA~~l---~~~i~~l~~~~-~~~~~~l~~l~~ 274 (431)
=|.|.|++|+||||.++.++..| |++++...... -...+.+++++.
T Consensus 5 ~IviEG~dGsGKtTq~~~l~~~l~~~g~~~~~~~~p~~~~~g~~ir~~l~ 54 (213)
T PRK13973 5 FITFEGGEGAGKSTQIRLLAERLRAAGYDVLVTREPGGSPGAEAIRHVLL 54 (213)
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHHHCCCeEEEEECCCCCchHHHHHHHHc
Confidence 36688999999999999999999 88777664333 223445566554
No 496
>PRK13900 type IV secretion system ATPase VirB11; Provisional
Probab=95.58 E-value=0.02 Score=57.61 Aligned_cols=28 Identities=25% Similarity=0.300 Sum_probs=25.0
Q ss_pred CCceeEEeCCCCCcHHHHHHHHHHHcCC
Q 035603 226 WKRGYLLFGPPGTGKSTMIAAMANCLNY 253 (431)
Q Consensus 226 ~~rg~LL~GPPGtGKTsla~aiA~~l~~ 253 (431)
.++.+|+.||+|+||||+++|+..+...
T Consensus 159 ~~~nili~G~tgSGKTTll~aL~~~ip~ 186 (332)
T PRK13900 159 SKKNIIISGGTSTGKTTFTNAALREIPA 186 (332)
T ss_pred cCCcEEEECCCCCCHHHHHHHHHhhCCC
Confidence 3578999999999999999999998864
No 497
>cd01983 Fer4_NifH The Fer4_NifH superfamily contains a variety of proteins which share a common ATP-binding domain. Functionally, proteins in this superfamily use the energy from hydrolysis of NTP to transfer electron or ion.
Probab=95.56 E-value=0.017 Score=45.63 Aligned_cols=30 Identities=30% Similarity=0.466 Sum_probs=25.3
Q ss_pred eEEeCCCCCcHHHHHHHHHHHc---CCCeEEec
Q 035603 230 YLLFGPPGTGKSTMIAAMANCL---NYDVYDLE 259 (431)
Q Consensus 230 ~LL~GPPGtGKTsla~aiA~~l---~~~i~~l~ 259 (431)
+++.|.+|+|||+++..+|..+ |.++..++
T Consensus 2 ~~~~g~~G~Gktt~~~~l~~~l~~~g~~v~~~~ 34 (99)
T cd01983 2 IVVTGKGGVGKTTLAANLAAALAKRGKRVLLID 34 (99)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEC
Confidence 5788999999999999999887 66666665
No 498
>PRK09302 circadian clock protein KaiC; Reviewed
Probab=95.54 E-value=0.026 Score=59.97 Aligned_cols=39 Identities=21% Similarity=0.195 Sum_probs=30.0
Q ss_pred CCCCCceeEEeCCCCCcHHHHHHHHHHH-c---CCCeEEeccc
Q 035603 223 GKAWKRGYLLFGPPGTGKSTMIAAMANC-L---NYDVYDLELT 261 (431)
Q Consensus 223 g~~~~rg~LL~GPPGtGKTsla~aiA~~-l---~~~i~~l~~~ 261 (431)
|+|...-+|++|+||||||+|+..++.+ + |.+++.+++.
T Consensus 27 G~p~Gs~~li~G~pGsGKT~l~~qf~~~~~~~~ge~~lyis~e 69 (509)
T PRK09302 27 GLPKGRPTLVSGTAGTGKTLFALQFLVNGIKRFDEPGVFVTFE 69 (509)
T ss_pred CCCCCcEEEEEeCCCCCHHHHHHHHHHHHHHhcCCCEEEEEcc
Confidence 6888888999999999999999977642 2 5566555443
No 499
>COG4619 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=95.48 E-value=0.01 Score=53.40 Aligned_cols=26 Identities=31% Similarity=0.507 Sum_probs=22.5
Q ss_pred CceeEEeCCCCCcHHHHHHHHHHHcC
Q 035603 227 KRGYLLFGPPGTGKSTMIAAMANCLN 252 (431)
Q Consensus 227 ~rg~LL~GPPGtGKTsla~aiA~~l~ 252 (431)
+-.+++.||+|||||+|.+++|+...
T Consensus 29 Ge~iaitGPSG~GKStllk~va~Lis 54 (223)
T COG4619 29 GEFIAITGPSGCGKSTLLKIVASLIS 54 (223)
T ss_pred CceEEEeCCCCccHHHHHHHHHhccC
Confidence 34589999999999999999998654
No 500
>COG4178 ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only]
Probab=95.46 E-value=0.0092 Score=63.82 Aligned_cols=28 Identities=25% Similarity=0.392 Sum_probs=24.4
Q ss_pred CCCCCceeEEeCCCCCcHHHHHHHHHHH
Q 035603 223 GKAWKRGYLLFGPPGTGKSTMIAAMANC 250 (431)
Q Consensus 223 g~~~~rg~LL~GPPGtGKTsla~aiA~~ 250 (431)
.++++..+|+.||+|||||||.||||+-
T Consensus 415 ~v~~G~~llI~G~SG~GKTsLlRaiaGL 442 (604)
T COG4178 415 EVRPGERLLITGESGAGKTSLLRALAGL 442 (604)
T ss_pred eeCCCCEEEEECCCCCCHHHHHHHHhcc
Confidence 4556677999999999999999999984
Done!