Query 035603
Match_columns 431
No_of_seqs 402 out of 2599
Neff 7.5
Searched_HMMs 29240
Date Mon Mar 25 06:55:05 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/035603.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/035603hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4b4t_J 26S protease regulatory 100.0 4.8E-40 1.6E-44 332.0 18.0 214 188-403 143-391 (405)
2 4b4t_I 26S protease regulatory 100.0 1E-39 3.6E-44 330.6 17.8 214 188-403 177-425 (437)
3 4b4t_L 26S protease subunit RP 100.0 5.3E-39 1.8E-43 328.8 17.6 213 188-402 176-423 (437)
4 4b4t_M 26S protease regulatory 100.0 5.2E-39 1.8E-43 328.6 16.7 193 186-380 174-397 (434)
5 4b4t_K 26S protease regulatory 100.0 1.6E-38 5.5E-43 324.7 19.6 191 188-380 167-389 (428)
6 4b4t_H 26S protease regulatory 100.0 2.5E-38 8.7E-43 323.3 18.2 214 188-403 204-452 (467)
7 3cf2_A TER ATPase, transitiona 100.0 3E-33 1E-37 304.6 7.9 190 188-379 472-692 (806)
8 3cf2_A TER ATPase, transitiona 100.0 2.5E-31 8.6E-36 289.5 15.5 189 189-379 200-416 (806)
9 2x8a_A Nuclear valosin-contain 100.0 1.6E-28 5.5E-33 238.0 17.9 190 188-379 5-227 (274)
10 3cf0_A Transitional endoplasmi 100.0 1.3E-27 4.5E-32 234.4 19.4 190 188-379 10-230 (301)
11 1lv7_A FTSH; alpha/beta domain 99.9 4E-26 1.4E-30 218.0 18.9 193 185-380 4-227 (257)
12 3h4m_A Proteasome-activating n 99.9 5.2E-26 1.8E-30 220.0 19.2 217 185-403 9-260 (285)
13 1xwi_A SKD1 protein; VPS4B, AA 99.9 1.3E-25 4.3E-30 222.5 21.9 188 188-379 7-224 (322)
14 2ce7_A Cell division protein F 99.9 4.1E-26 1.4E-30 236.5 17.3 211 188-401 11-256 (476)
15 2qz4_A Paraplegin; AAA+, SPG7, 99.9 5E-26 1.7E-30 216.9 16.4 189 189-380 2-224 (262)
16 3eie_A Vacuolar protein sortin 99.9 3.2E-25 1.1E-29 219.3 17.3 191 185-379 10-229 (322)
17 2qp9_X Vacuolar protein sortin 99.9 1.2E-24 4.1E-29 218.2 16.6 189 187-379 45-262 (355)
18 3hu3_A Transitional endoplasmi 99.9 2.6E-24 9E-29 224.2 17.2 190 188-379 199-416 (489)
19 2dhr_A FTSH; AAA+ protein, hex 99.9 1.8E-24 6E-29 225.4 14.4 211 188-401 26-271 (499)
20 1ixz_A ATP-dependent metallopr 99.9 1.1E-23 3.7E-28 200.8 18.6 190 187-379 10-230 (254)
21 2zan_A Vacuolar protein sortin 99.9 5.7E-24 1.9E-28 219.5 17.5 189 187-379 128-346 (444)
22 2r62_A Cell division protease 99.9 1.1E-24 3.8E-29 208.9 7.2 191 188-380 6-228 (268)
23 1iy2_A ATP-dependent metallopr 99.9 1.9E-22 6.4E-27 195.1 19.7 190 187-379 34-254 (278)
24 3d8b_A Fidgetin-like protein 1 99.9 1.4E-22 4.8E-27 203.3 17.4 190 188-380 79-297 (357)
25 3vfd_A Spastin; ATPase, microt 99.9 2.5E-22 8.6E-27 203.5 18.2 192 185-379 107-327 (389)
26 3b9p_A CG5977-PA, isoform A; A 99.9 3.4E-22 1.2E-26 194.4 17.8 190 187-379 15-234 (297)
27 1ypw_A Transitional endoplasmi 99.9 5.3E-25 1.8E-29 242.4 -3.5 190 188-379 472-692 (806)
28 3t15_A Ribulose bisphosphate c 99.9 3.8E-22 1.3E-26 194.9 9.4 150 221-375 30-221 (293)
29 1ypw_A Transitional endoplasmi 99.8 6.3E-21 2.2E-25 209.9 14.0 190 188-379 199-416 (806)
30 1g41_A Heat shock protein HSLU 99.8 8.9E-20 3E-24 186.8 8.6 149 193-345 15-188 (444)
31 2c9o_A RUVB-like 1; hexameric 99.7 8.2E-19 2.8E-23 181.5 1.4 175 188-379 32-261 (456)
32 3pfi_A Holliday junction ATP-d 99.7 5.3E-16 1.8E-20 153.3 20.5 188 179-378 17-227 (338)
33 3syl_A Protein CBBX; photosynt 99.7 1.2E-15 4.2E-20 148.6 16.9 152 194-352 32-220 (309)
34 1hqc_A RUVB; extended AAA-ATPa 99.6 4.1E-15 1.4E-19 145.7 16.8 181 188-378 7-211 (324)
35 3u61_B DNA polymerase accessor 99.6 4.2E-15 1.4E-19 146.1 16.6 149 179-349 14-178 (324)
36 1ofh_A ATP-dependent HSL prote 99.6 8.7E-15 3E-19 142.0 14.4 155 193-349 15-215 (310)
37 3uk6_A RUVB-like 2; hexameric 99.6 3.1E-14 1E-18 142.0 16.0 176 190-380 41-305 (368)
38 2chg_A Replication factor C sm 99.6 1E-13 3.5E-18 126.6 18.2 146 185-350 9-175 (226)
39 1d2n_A N-ethylmaleimide-sensit 99.6 6E-14 2.1E-18 134.6 15.9 149 193-347 33-210 (272)
40 3m6a_A ATP-dependent protease 99.5 5.5E-14 1.9E-18 148.3 16.0 148 192-349 80-266 (543)
41 1njg_A DNA polymerase III subu 99.5 1.2E-13 4.3E-18 127.4 16.1 175 185-378 15-228 (250)
42 2chq_A Replication factor C sm 99.5 1.6E-13 5.4E-18 133.5 12.4 146 185-350 9-175 (319)
43 3hws_A ATP-dependent CLP prote 99.5 9E-14 3.1E-18 139.1 10.6 154 194-349 16-269 (363)
44 2r44_A Uncharacterized protein 99.5 4E-13 1.4E-17 132.4 15.0 144 191-351 25-200 (331)
45 3pxg_A Negative regulator of g 99.5 7E-13 2.4E-17 137.4 17.4 143 186-351 173-340 (468)
46 4fcw_A Chaperone protein CLPB; 99.5 1.7E-13 5.9E-18 133.3 12.1 153 193-351 17-231 (311)
47 1sxj_A Activator 1 95 kDa subu 99.5 4.2E-13 1.4E-17 140.7 15.5 163 179-351 27-224 (516)
48 3pvs_A Replication-associated 99.5 6.2E-13 2.1E-17 137.0 16.2 144 185-351 18-180 (447)
49 1iqp_A RFCS; clamp loader, ext 99.5 7.7E-13 2.6E-17 129.0 15.4 149 180-350 14-183 (327)
50 1jr3_A DNA polymerase III subu 99.5 2.2E-12 7.4E-17 128.5 19.0 148 185-351 8-193 (373)
51 1jbk_A CLPB protein; beta barr 99.4 1.5E-13 5.2E-18 122.6 8.2 136 188-345 17-194 (195)
52 1sxj_B Activator 1 37 kDa subu 99.4 1.6E-12 5.4E-17 126.6 15.4 149 180-350 10-180 (323)
53 3pxi_A Negative regulator of g 99.4 2E-12 7E-17 141.5 17.9 143 186-351 173-340 (758)
54 1sxj_D Activator 1 41 kDa subu 99.4 1.2E-12 4E-17 129.4 14.0 149 180-350 26-206 (353)
55 1g8p_A Magnesium-chelatase 38 99.4 3.9E-12 1.3E-16 125.6 16.2 147 186-349 17-232 (350)
56 1um8_A ATP-dependent CLP prote 99.4 7.8E-12 2.7E-16 125.5 18.1 153 194-348 22-285 (376)
57 1in4_A RUVB, holliday junction 99.4 1.5E-11 5.3E-16 121.7 19.9 184 185-378 17-223 (334)
58 1sxj_C Activator 1 40 kDa subu 99.4 6.8E-12 2.3E-16 124.2 16.8 149 179-349 13-182 (340)
59 3pxi_A Negative regulator of g 99.4 2.4E-12 8.2E-17 140.9 14.8 171 193-377 491-699 (758)
60 3bos_A Putative DNA replicatio 99.4 2.5E-12 8.7E-17 119.4 11.4 150 185-350 20-188 (242)
61 1l8q_A Chromosomal replication 99.4 7.7E-12 2.6E-16 122.9 15.3 150 186-351 4-181 (324)
62 1r6b_X CLPA protein; AAA+, N-t 99.4 7.6E-12 2.6E-16 136.9 16.5 147 194-350 459-667 (758)
63 1sxj_E Activator 1 40 kDa subu 99.3 1.7E-11 5.9E-16 121.4 15.6 175 185-378 6-237 (354)
64 2v1u_A Cell division control p 99.3 1.4E-11 4.9E-16 122.6 15.0 150 188-350 14-215 (387)
65 2p65_A Hypothetical protein PF 99.3 1.5E-12 5.1E-17 116.0 6.6 129 187-337 16-187 (187)
66 2qby_B CDC6 homolog 3, cell di 99.3 4.4E-11 1.5E-15 119.4 17.4 143 193-350 20-211 (384)
67 1a5t_A Delta prime, HOLB; zinc 99.3 1.3E-10 4.4E-15 115.0 18.7 117 226-349 23-180 (334)
68 2z4s_A Chromosomal replication 99.3 2.3E-11 7.8E-16 125.1 12.8 150 185-350 97-277 (440)
69 1fnn_A CDC6P, cell division co 99.3 1E-10 3.4E-15 116.8 17.1 153 190-351 14-208 (389)
70 1qvr_A CLPB protein; coiled co 99.2 7.4E-11 2.5E-15 130.8 16.1 141 188-350 165-346 (854)
71 3te6_A Regulatory protein SIR3 99.2 2.8E-10 9.7E-15 111.8 18.0 176 225-407 43-292 (318)
72 2bjv_A PSP operon transcriptio 99.2 5E-11 1.7E-15 113.6 12.0 147 190-350 3-195 (265)
73 1r6b_X CLPA protein; AAA+, N-t 99.2 1.7E-10 5.8E-15 126.2 16.9 146 187-350 180-363 (758)
74 2qby_A CDC6 homolog 1, cell di 99.2 1.5E-10 5.1E-15 114.9 15.0 149 188-350 15-211 (386)
75 2gno_A DNA polymerase III, gam 99.2 1.6E-10 5.4E-15 113.2 12.8 114 227-349 18-152 (305)
76 3n70_A Transport activator; si 99.1 9.9E-11 3.4E-15 101.7 9.0 105 194-314 2-116 (145)
77 1qvr_A CLPB protein; coiled co 99.1 2.2E-10 7.4E-15 127.0 13.4 148 193-350 558-771 (854)
78 3nbx_X ATPase RAVA; AAA+ ATPas 99.0 1.2E-09 4.2E-14 113.7 13.2 137 194-349 23-196 (500)
79 1ojl_A Transcriptional regulat 99.0 1.1E-09 3.7E-14 107.1 11.5 144 194-350 3-191 (304)
80 4akg_A Glutathione S-transfera 99.0 1.6E-09 5.3E-14 130.9 12.7 121 227-350 1267-1432(2695)
81 3co5_A Putative two-component 99.0 4.5E-10 1.5E-14 97.3 5.7 124 194-335 5-141 (143)
82 3f9v_A Minichromosome maintena 98.9 1.9E-10 6.4E-15 122.5 2.8 120 229-351 329-492 (595)
83 1svm_A Large T antigen; AAA+ f 98.9 6.4E-10 2.2E-14 111.8 3.5 106 222-335 164-284 (377)
84 3ec2_A DNA replication protein 98.8 1.1E-08 3.7E-13 91.5 9.6 69 188-262 5-77 (180)
85 1w5s_A Origin recognition comp 98.7 9.1E-08 3.1E-12 96.0 13.7 150 191-350 20-229 (412)
86 4akg_A Glutathione S-transfera 98.6 8.1E-07 2.8E-11 107.6 20.2 117 227-346 645-790 (2695)
87 1tue_A Replication protein E1; 98.6 1.2E-07 4.3E-12 86.9 7.9 35 223-257 54-88 (212)
88 3cmw_A Protein RECA, recombina 98.5 9.1E-08 3.1E-12 111.3 7.1 65 190-254 1017-1109(1706)
89 1u0j_A DNA replication protein 98.5 6.7E-07 2.3E-11 85.4 11.1 29 225-253 102-130 (267)
90 3k1j_A LON protease, ATP-depen 98.5 2.2E-07 7.7E-12 99.0 8.4 53 187-254 35-87 (604)
91 2w58_A DNAI, primosome compone 98.4 4.7E-07 1.6E-11 82.1 6.8 69 188-262 20-92 (202)
92 2vhj_A Ntpase P4, P4; non- hyd 98.3 5.4E-07 1.9E-11 88.2 5.4 96 223-321 119-242 (331)
93 3vkg_A Dynein heavy chain, cyt 98.2 2.4E-05 8.1E-10 95.8 19.5 119 227-348 604-752 (3245)
94 2qgz_A Helicase loader, putati 98.2 1.9E-06 6.3E-11 84.2 7.0 67 189-261 120-190 (308)
95 3vkg_A Dynein heavy chain, cyt 98.1 6E-06 2E-10 100.9 11.5 121 227-350 1304-1470(3245)
96 2kjq_A DNAA-related protein; s 98.1 5.2E-06 1.8E-10 72.3 7.1 39 226-264 35-76 (149)
97 2r2a_A Uncharacterized protein 98.0 5.3E-06 1.8E-10 75.9 4.8 107 228-339 6-156 (199)
98 3dzd_A Transcriptional regulat 98.0 3.4E-05 1.2E-09 77.1 11.0 172 194-386 130-346 (368)
99 2fna_A Conserved hypothetical 98.0 0.0002 6.8E-09 69.6 16.3 56 190-262 10-65 (357)
100 1ny5_A Transcriptional regulat 97.9 5.4E-05 1.9E-09 76.1 12.2 146 192-350 136-326 (387)
101 2qen_A Walker-type ATPase; unk 97.9 0.00034 1.2E-08 67.9 17.1 55 189-260 8-62 (350)
102 3t61_A Gluconokinase; PSI-biol 97.9 3.8E-05 1.3E-09 69.5 9.5 33 227-259 18-50 (202)
103 3trf_A Shikimate kinase, SK; a 97.8 9.6E-06 3.3E-10 72.2 4.2 34 227-260 5-38 (185)
104 3vaa_A Shikimate kinase, SK; s 97.8 1.2E-05 4.2E-10 72.8 4.3 34 226-259 24-57 (199)
105 2rhm_A Putative kinase; P-loop 97.8 1.4E-05 4.7E-10 71.4 4.1 35 224-258 2-36 (193)
106 1qhx_A CPT, protein (chloramph 97.8 1.8E-05 6.3E-10 69.7 4.9 33 228-260 4-36 (178)
107 1jr3_D DNA polymerase III, del 97.7 9E-05 3.1E-09 72.8 9.3 115 226-350 17-156 (343)
108 3f8t_A Predicted ATPase involv 97.7 6.2E-05 2.1E-09 77.1 7.2 131 195-339 215-384 (506)
109 3kb2_A SPBC2 prophage-derived 97.7 2.9E-05 9.9E-10 67.8 4.2 31 229-259 3-33 (173)
110 1via_A Shikimate kinase; struc 97.6 2.4E-05 8.3E-10 69.1 3.5 31 229-259 6-36 (175)
111 2iyv_A Shikimate kinase, SK; t 97.6 3.1E-05 1E-09 68.9 4.0 32 229-260 4-35 (184)
112 1zuh_A Shikimate kinase; alpha 97.6 3E-05 1E-09 67.9 3.9 33 228-260 8-40 (168)
113 1y63_A LMAJ004144AAA protein; 97.6 3.4E-05 1.1E-09 69.0 4.2 33 227-259 10-43 (184)
114 3iij_A Coilin-interacting nucl 97.6 3.4E-05 1.2E-09 68.4 4.2 33 227-259 11-43 (180)
115 1kag_A SKI, shikimate kinase I 97.6 3.7E-05 1.3E-09 67.4 3.9 31 228-258 5-35 (173)
116 2cdn_A Adenylate kinase; phosp 97.5 5.6E-05 1.9E-09 68.3 4.5 33 227-259 20-52 (201)
117 1e6c_A Shikimate kinase; phosp 97.5 4.5E-05 1.5E-09 66.8 3.6 32 228-259 3-34 (173)
118 1gvn_B Zeta; postsegregational 97.5 0.00011 3.8E-09 70.8 6.4 35 226-260 32-66 (287)
119 1tev_A UMP-CMP kinase; ploop, 97.5 5.3E-05 1.8E-09 67.4 3.7 33 227-259 3-35 (196)
120 2ze6_A Isopentenyl transferase 97.5 6E-05 2.1E-09 71.2 4.2 32 229-260 3-34 (253)
121 3lw7_A Adenylate kinase relate 97.5 5.3E-05 1.8E-09 65.9 3.6 29 229-258 3-31 (179)
122 2pt5_A Shikimate kinase, SK; a 97.5 6.8E-05 2.3E-09 65.4 3.9 31 229-259 2-32 (168)
123 1qf9_A UMP/CMP kinase, protein 97.5 6.7E-05 2.3E-09 66.6 3.8 33 227-259 6-38 (194)
124 3cm0_A Adenylate kinase; ATP-b 97.4 5.4E-05 1.8E-09 67.2 3.1 32 228-259 5-36 (186)
125 2c95_A Adenylate kinase 1; tra 97.4 6.8E-05 2.3E-09 67.0 3.8 33 227-259 9-41 (196)
126 1ly1_A Polynucleotide kinase; 97.4 4.9E-05 1.7E-09 66.8 2.6 30 228-257 3-33 (181)
127 1zd8_A GTP:AMP phosphotransfer 97.4 7.2E-05 2.5E-09 69.0 3.7 32 227-258 7-38 (227)
128 3dl0_A Adenylate kinase; phosp 97.4 8.5E-05 2.9E-09 67.8 4.1 30 230-259 3-32 (216)
129 2bwj_A Adenylate kinase 5; pho 97.4 7.3E-05 2.5E-09 66.9 3.5 33 227-259 12-44 (199)
130 1kht_A Adenylate kinase; phosp 97.4 6.9E-05 2.4E-09 66.5 3.3 30 228-257 4-38 (192)
131 3kw6_A 26S protease regulatory 97.4 4.8E-05 1.6E-09 58.5 1.9 69 334-402 1-74 (78)
132 1zp6_A Hypothetical protein AT 97.4 8.7E-05 3E-09 66.1 3.9 37 224-260 6-42 (191)
133 3fb4_A Adenylate kinase; psych 97.4 9.3E-05 3.2E-09 67.4 3.8 30 230-259 3-32 (216)
134 1aky_A Adenylate kinase; ATP:A 97.4 9.6E-05 3.3E-09 67.8 3.9 31 228-258 5-35 (220)
135 3be4_A Adenylate kinase; malar 97.4 7.8E-05 2.7E-09 68.4 3.3 31 228-258 6-36 (217)
136 2p5t_B PEZT; postsegregational 97.4 0.00015 5E-09 68.4 5.1 39 225-263 30-68 (253)
137 1ukz_A Uridylate kinase; trans 97.3 0.00012 4.2E-09 66.0 4.2 32 228-259 16-47 (203)
138 1knq_A Gluconate kinase; ALFA/ 97.3 0.00014 4.6E-09 64.0 4.4 33 227-259 8-40 (175)
139 2vli_A Antibiotic resistance p 97.3 9.8E-05 3.3E-09 65.2 3.3 30 227-256 5-34 (183)
140 1zak_A Adenylate kinase; ATP:A 97.3 8.4E-05 2.9E-09 68.2 2.8 32 227-258 5-36 (222)
141 1ak2_A Adenylate kinase isoenz 97.3 0.00012 4.2E-09 67.8 3.9 31 228-258 17-47 (233)
142 1e4v_A Adenylate kinase; trans 97.3 0.00014 4.7E-09 66.4 3.5 29 230-258 3-31 (214)
143 4eun_A Thermoresistant glucoki 97.2 0.0002 6.9E-09 64.7 4.4 31 227-257 29-59 (200)
144 3umf_A Adenylate kinase; rossm 97.2 0.00018 6.2E-09 66.5 4.1 32 225-256 27-58 (217)
145 2pez_A Bifunctional 3'-phospho 97.2 0.00024 8.1E-09 62.8 4.7 34 227-260 5-41 (179)
146 2pbr_A DTMP kinase, thymidylat 97.2 0.00023 7.7E-09 63.2 4.4 31 230-260 3-36 (195)
147 3tlx_A Adenylate kinase 2; str 97.2 0.00018 6.3E-09 67.3 3.9 34 226-259 28-61 (243)
148 2cvh_A DNA repair and recombin 97.2 0.00058 2E-08 61.8 6.8 50 223-272 16-65 (220)
149 3crm_A TRNA delta(2)-isopenten 97.2 0.00023 7.8E-09 69.7 4.3 34 227-260 5-38 (323)
150 2xb4_A Adenylate kinase; ATP-b 97.2 0.0002 6.8E-09 66.1 3.5 29 230-258 3-31 (223)
151 2ga8_A Hypothetical 39.9 kDa p 97.2 7.1E-05 2.4E-09 74.2 0.4 50 199-257 5-54 (359)
152 2if2_A Dephospho-COA kinase; a 97.1 0.00021 7.1E-09 64.5 3.2 31 229-260 3-33 (204)
153 3sr0_A Adenylate kinase; phosp 97.1 0.00027 9.2E-09 64.8 4.0 28 230-257 3-30 (206)
154 2plr_A DTMP kinase, probable t 97.1 0.00055 1.9E-08 61.6 5.8 45 228-275 5-51 (213)
155 2bbw_A Adenylate kinase 4, AK4 97.1 0.00035 1.2E-08 65.2 4.5 31 227-257 27-57 (246)
156 1nks_A Adenylate kinase; therm 97.1 0.00017 5.7E-09 64.0 2.1 24 229-252 3-26 (194)
157 3ake_A Cytidylate kinase; CMP 97.1 0.0003 1E-08 63.3 3.9 31 229-259 4-34 (208)
158 2v54_A DTMP kinase, thymidylat 97.1 0.00033 1.1E-08 62.9 4.1 34 228-261 5-39 (204)
159 1jjv_A Dephospho-COA kinase; P 97.1 0.00026 8.9E-09 64.0 3.4 30 229-259 4-33 (206)
160 3nwj_A ATSK2; P loop, shikimat 97.1 0.00029 1E-08 66.5 3.8 34 227-260 48-81 (250)
161 2jaq_A Deoxyguanosine kinase; 97.1 0.00031 1.1E-08 62.9 3.7 29 229-257 2-30 (205)
162 1cke_A CK, MSSA, protein (cyti 97.1 0.00034 1.2E-08 64.0 3.9 31 228-258 6-36 (227)
163 2z0h_A DTMP kinase, thymidylat 97.0 0.00041 1.4E-08 61.8 4.3 31 230-260 3-36 (197)
164 1z6t_A APAF-1, apoptotic prote 97.0 0.01 3.4E-07 62.3 15.5 64 189-263 120-190 (591)
165 1n0w_A DNA repair protein RAD5 97.0 0.00081 2.8E-08 61.9 6.2 50 223-272 20-78 (243)
166 2krk_A 26S protease regulatory 97.0 0.00021 7E-09 56.2 1.7 70 332-401 7-81 (86)
167 3a4m_A L-seryl-tRNA(SEC) kinas 97.0 0.00049 1.7E-08 65.0 4.7 32 228-259 5-39 (260)
168 2grj_A Dephospho-COA kinase; T 97.0 0.00036 1.2E-08 63.2 3.6 33 228-260 13-45 (192)
169 3r20_A Cytidylate kinase; stru 97.0 0.00052 1.8E-08 64.1 4.3 32 227-258 9-40 (233)
170 3cmu_A Protein RECA, recombina 96.9 0.00064 2.2E-08 80.5 5.9 39 223-261 1423-1464(2050)
171 3uie_A Adenylyl-sulfate kinase 96.9 0.0007 2.4E-08 61.1 4.9 34 226-259 24-60 (200)
172 1uf9_A TT1252 protein; P-loop, 96.9 0.0005 1.7E-08 61.5 3.8 32 227-259 8-39 (203)
173 2wwf_A Thymidilate kinase, put 96.9 0.00027 9.2E-09 63.9 1.8 32 227-258 10-41 (212)
174 4a74_A DNA repair and recombin 96.9 0.0012 4E-08 60.2 6.2 30 223-252 21-50 (231)
175 3hr8_A Protein RECA; alpha and 96.9 0.00081 2.8E-08 66.8 5.2 42 223-264 57-101 (356)
176 3upu_A ATP-dependent DNA helic 96.9 0.0012 4E-08 67.7 6.6 54 185-251 16-69 (459)
177 2h92_A Cytidylate kinase; ross 96.9 0.0006 2.1E-08 62.1 3.9 32 228-259 4-35 (219)
178 2z43_A DNA repair and recombin 96.9 0.0011 3.9E-08 64.6 6.1 51 223-273 103-162 (324)
179 3sfz_A APAF-1, apoptotic pepti 96.8 0.013 4.6E-07 66.3 15.5 172 188-374 119-324 (1249)
180 1vht_A Dephospho-COA kinase; s 96.8 0.00067 2.3E-08 61.9 3.8 31 228-259 5-35 (218)
181 1q3t_A Cytidylate kinase; nucl 96.8 0.00081 2.8E-08 62.3 4.2 33 227-259 16-48 (236)
182 1ltq_A Polynucleotide kinase; 96.8 0.00055 1.9E-08 65.6 3.0 31 228-258 3-34 (301)
183 1v5w_A DMC1, meiotic recombina 96.8 0.0021 7.3E-08 63.3 7.1 51 223-273 118-177 (343)
184 2qor_A Guanylate kinase; phosp 96.7 0.00095 3.2E-08 60.4 4.2 29 224-252 9-37 (204)
185 1ye8_A Protein THEP1, hypothet 96.7 0.00086 2.9E-08 59.8 3.8 27 229-255 2-28 (178)
186 1nn5_A Similar to deoxythymidy 96.7 0.00044 1.5E-08 62.5 1.8 27 227-253 9-35 (215)
187 2qt1_A Nicotinamide riboside k 96.7 0.00067 2.3E-08 61.3 3.0 32 228-259 22-54 (207)
188 1uj2_A Uridine-cytidine kinase 96.7 0.001 3.4E-08 62.4 4.3 28 227-254 22-49 (252)
189 2w0m_A SSO2452; RECA, SSPF, un 96.7 0.00072 2.5E-08 61.5 3.1 38 223-260 19-59 (235)
190 4e22_A Cytidylate kinase; P-lo 96.7 0.0012 4.2E-08 62.0 4.7 30 228-257 28-57 (252)
191 3a8t_A Adenylate isopentenyltr 96.7 0.00086 3E-08 65.9 3.7 35 228-262 41-75 (339)
192 3foz_A TRNA delta(2)-isopenten 96.7 0.0011 3.8E-08 64.4 4.4 36 226-261 9-44 (316)
193 2bdt_A BH3686; alpha-beta prot 96.7 0.0011 3.9E-08 58.8 4.1 25 229-253 4-28 (189)
194 2yvu_A Probable adenylyl-sulfa 96.6 0.0017 5.8E-08 57.6 5.0 26 227-252 13-38 (186)
195 3zvl_A Bifunctional polynucleo 96.6 0.00075 2.6E-08 68.4 2.9 34 226-259 257-290 (416)
196 1kgd_A CASK, peripheral plasma 96.6 0.0014 4.7E-08 58.2 4.1 26 227-252 5-30 (180)
197 2j41_A Guanylate kinase; GMP, 96.6 0.0012 4E-08 59.3 3.6 26 226-251 5-30 (207)
198 2f6r_A COA synthase, bifunctio 96.6 0.0011 3.7E-08 63.5 3.4 31 228-259 76-106 (281)
199 3fdi_A Uncharacterized protein 96.6 0.0013 4.3E-08 59.9 3.6 30 228-257 7-36 (201)
200 1m7g_A Adenylylsulfate kinase; 96.6 0.0016 5.6E-08 59.1 4.4 34 226-259 24-61 (211)
201 1pzn_A RAD51, DNA repair and r 96.5 0.0024 8.3E-08 63.1 5.7 51 222-272 126-185 (349)
202 1rz3_A Hypothetical protein rb 96.5 0.0042 1.4E-07 56.0 6.8 34 227-260 22-58 (201)
203 2qmh_A HPR kinase/phosphorylas 96.5 0.0012 4.2E-08 60.0 3.0 35 227-262 34-68 (205)
204 1xp8_A RECA protein, recombina 96.5 0.0021 7.2E-08 64.0 5.0 40 223-262 70-112 (366)
205 3d3q_A TRNA delta(2)-isopenten 96.5 0.0014 4.9E-08 64.5 3.6 34 228-261 8-41 (340)
206 2dr3_A UPF0273 protein PH0284; 96.5 0.0019 6.4E-08 59.4 4.2 40 223-262 19-61 (247)
207 3tau_A Guanylate kinase, GMP k 96.5 0.0017 5.7E-08 59.1 3.8 27 227-253 8-34 (208)
208 2ehv_A Hypothetical protein PH 96.4 0.0014 4.8E-08 60.5 2.9 26 223-248 26-51 (251)
209 1u94_A RECA protein, recombina 96.4 0.0024 8.1E-08 63.4 4.6 38 223-260 59-99 (356)
210 3exa_A TRNA delta(2)-isopenten 96.4 0.0019 6.3E-08 63.0 3.7 34 228-261 4-37 (322)
211 2i1q_A DNA repair and recombin 96.4 0.0032 1.1E-07 61.1 5.4 28 223-250 94-121 (322)
212 3c8u_A Fructokinase; YP_612366 96.3 0.0033 1.1E-07 57.0 5.0 26 227-252 22-47 (208)
213 3tr0_A Guanylate kinase, GMP k 96.3 0.0024 8.2E-08 57.2 4.0 26 227-252 7-32 (205)
214 4b3f_X DNA-binding protein smu 96.3 0.0044 1.5E-07 66.3 6.6 58 189-261 182-242 (646)
215 2zr9_A Protein RECA, recombina 96.3 0.0024 8.3E-08 63.1 4.2 39 223-261 57-98 (349)
216 1ex7_A Guanylate kinase; subst 96.2 0.003 1E-07 56.9 4.0 28 228-255 2-29 (186)
217 3b9q_A Chloroplast SRP recepto 96.2 0.003 1E-07 61.2 4.3 53 199-251 70-124 (302)
218 2zts_A Putative uncharacterize 96.2 0.0035 1.2E-07 57.6 4.6 39 223-261 26-68 (251)
219 3asz_A Uridine kinase; cytidin 96.2 0.0023 7.7E-08 57.8 3.2 32 228-259 7-40 (211)
220 3a00_A Guanylate kinase, GMP k 96.2 0.0027 9.3E-08 56.5 3.6 25 228-252 2-26 (186)
221 1nlf_A Regulatory protein REPA 96.2 0.0019 6.6E-08 61.3 2.7 29 223-251 26-54 (279)
222 3gmt_A Adenylate kinase; ssgci 96.2 0.0022 7.5E-08 59.7 3.0 115 229-348 10-132 (230)
223 1x6v_B Bifunctional 3'-phospho 96.1 0.0042 1.5E-07 66.0 5.1 33 227-259 52-87 (630)
224 3lda_A DNA repair protein RAD5 96.1 0.0069 2.3E-07 61.0 6.3 50 223-272 174-232 (400)
225 1htw_A HI0065; nucleotide-bind 96.1 0.0043 1.5E-07 54.2 4.3 28 224-251 30-57 (158)
226 1lvg_A Guanylate kinase, GMP k 96.1 0.003 1E-07 57.0 3.3 26 227-252 4-29 (198)
227 2v9p_A Replication protein E1; 96.1 0.0038 1.3E-07 60.6 4.2 31 222-252 121-151 (305)
228 1cr0_A DNA primase/helicase; R 96.0 0.0034 1.2E-07 60.1 3.5 39 222-260 30-72 (296)
229 3hdt_A Putative kinase; struct 96.0 0.0032 1.1E-07 58.3 3.1 32 228-259 15-46 (223)
230 2og2_A Putative signal recogni 96.0 0.0041 1.4E-07 61.8 4.0 53 199-251 127-181 (359)
231 1z6g_A Guanylate kinase; struc 96.0 0.0042 1.4E-07 56.9 3.7 27 225-251 21-47 (218)
232 1znw_A Guanylate kinase, GMP k 96.0 0.0045 1.5E-07 56.0 3.9 28 225-252 18-45 (207)
233 3io5_A Recombination and repai 96.0 0.0066 2.3E-07 59.2 5.2 39 223-262 25-68 (333)
234 3ney_A 55 kDa erythrocyte memb 95.9 0.0055 1.9E-07 55.6 4.3 26 227-252 19-44 (197)
235 3eph_A TRNA isopentenyltransfe 95.9 0.004 1.4E-07 62.6 3.6 33 228-260 3-35 (409)
236 4i1u_A Dephospho-COA kinase; s 95.9 0.017 5.7E-07 52.9 7.4 31 229-260 11-41 (210)
237 4eaq_A DTMP kinase, thymidylat 95.9 0.0067 2.3E-07 56.1 4.7 31 228-258 27-59 (229)
238 3aji_B S6C, proteasome (prosom 95.9 0.0039 1.3E-07 48.1 2.7 68 337-404 2-74 (83)
239 2a5y_B CED-4; apoptosis; HET: 95.9 0.24 8.1E-06 51.6 17.1 167 197-377 132-336 (549)
240 3kl4_A SRP54, signal recogniti 95.9 0.0055 1.9E-07 62.3 4.4 62 199-261 69-134 (433)
241 1vma_A Cell division protein F 95.8 0.0048 1.6E-07 59.9 3.4 59 201-260 79-140 (306)
242 3dm5_A SRP54, signal recogniti 95.8 0.0063 2.2E-07 62.0 4.4 62 199-261 73-137 (443)
243 2yhs_A FTSY, cell division pro 95.8 0.0053 1.8E-07 63.4 3.8 25 227-251 293-317 (503)
244 1gtv_A TMK, thymidylate kinase 95.8 0.0022 7.4E-08 57.9 0.8 24 229-252 2-25 (214)
245 3jvv_A Twitching mobility prot 95.7 0.011 3.7E-07 58.6 5.9 24 229-252 125-148 (356)
246 1s96_A Guanylate kinase, GMP k 95.7 0.0067 2.3E-07 55.9 3.9 29 224-252 13-41 (219)
247 3e70_C DPA, signal recognition 95.7 0.012 4E-07 57.7 5.8 52 200-251 98-153 (328)
248 2jeo_A Uridine-cytidine kinase 95.7 0.0067 2.3E-07 56.4 3.8 27 228-254 26-52 (245)
249 4gp7_A Metallophosphoesterase; 95.6 0.0053 1.8E-07 53.9 2.8 23 226-248 8-30 (171)
250 2eyu_A Twitching motility prot 95.6 0.0086 2.9E-07 56.6 4.3 27 225-251 23-49 (261)
251 1odf_A YGR205W, hypothetical 3 95.5 0.0081 2.8E-07 57.8 4.0 28 226-253 30-57 (290)
252 2i3b_A HCR-ntpase, human cance 95.5 0.0068 2.3E-07 54.5 3.2 23 229-251 3-25 (189)
253 3vlf_B 26S protease regulatory 95.5 0.0018 6.1E-08 50.9 -0.6 66 337-402 2-72 (88)
254 1kao_A RAP2A; GTP-binding prot 95.5 0.048 1.6E-06 46.0 8.5 22 229-250 5-26 (167)
255 1p9r_A General secretion pathw 95.5 0.021 7.2E-07 57.7 7.0 50 189-253 143-193 (418)
256 2axn_A 6-phosphofructo-2-kinas 95.4 0.011 3.8E-07 61.5 4.8 28 227-254 35-62 (520)
257 3lnc_A Guanylate kinase, GMP k 95.4 0.0048 1.7E-07 56.7 1.7 26 227-252 27-53 (231)
258 2ewv_A Twitching motility prot 95.4 0.011 3.8E-07 58.9 4.4 29 224-252 133-161 (372)
259 4a1f_A DNAB helicase, replicat 95.3 0.027 9.2E-07 55.3 6.9 39 223-261 42-83 (338)
260 3tqc_A Pantothenate kinase; bi 95.3 0.021 7.1E-07 55.7 6.1 26 227-252 92-117 (321)
261 1a7j_A Phosphoribulokinase; tr 95.3 0.0043 1.5E-07 59.7 1.2 36 228-263 6-44 (290)
262 3bh0_A DNAB-like replicative h 95.3 0.011 3.7E-07 57.5 3.8 39 223-261 64-105 (315)
263 1zu4_A FTSY; GTPase, signal re 95.2 0.0095 3.2E-07 58.1 3.4 61 201-261 74-142 (320)
264 3v9p_A DTMP kinase, thymidylat 95.2 0.019 6.4E-07 53.2 5.2 32 228-259 26-64 (227)
265 3e1s_A Exodeoxyribonuclease V, 95.2 0.0095 3.3E-07 62.8 3.6 33 228-260 205-240 (574)
266 1c9k_A COBU, adenosylcobinamid 95.2 0.013 4.5E-07 52.3 3.9 32 230-262 2-33 (180)
267 1np6_A Molybdopterin-guanine d 95.2 0.012 4.1E-07 52.2 3.7 25 227-251 6-30 (174)
268 2orw_A Thymidine kinase; TMTK, 95.2 0.014 4.9E-07 52.0 4.2 31 228-258 4-37 (184)
269 1m8p_A Sulfate adenylyltransfe 95.2 0.011 3.8E-07 62.3 4.0 32 228-259 397-432 (573)
270 2ged_A SR-beta, signal recogni 95.2 0.021 7.3E-07 50.1 5.3 27 225-251 46-72 (193)
271 3tqf_A HPR(Ser) kinase; transf 95.2 0.0099 3.4E-07 52.8 3.0 29 227-256 16-44 (181)
272 3kta_A Chromosome segregation 95.1 0.011 3.6E-07 52.0 3.1 24 229-252 28-51 (182)
273 1sq5_A Pantothenate kinase; P- 95.1 0.012 4.1E-07 56.9 3.6 25 228-252 81-105 (308)
274 2ocp_A DGK, deoxyguanosine kin 95.1 0.013 4.3E-07 54.2 3.7 25 228-252 3-27 (241)
275 2r8r_A Sensor protein; KDPD, P 95.1 0.018 6E-07 53.4 4.5 34 228-261 7-43 (228)
276 1bif_A 6-phosphofructo-2-kinas 95.1 0.0069 2.4E-07 62.1 2.0 30 227-256 39-68 (469)
277 2j37_W Signal recognition part 95.0 0.015 5E-07 60.3 4.2 59 200-260 74-137 (504)
278 1p5z_B DCK, deoxycytidine kina 95.0 0.0056 1.9E-07 57.6 1.0 29 228-256 25-54 (263)
279 1rj9_A FTSY, signal recognitio 95.0 0.016 5.5E-07 56.0 4.2 26 227-252 102-127 (304)
280 3aez_A Pantothenate kinase; tr 94.9 0.015 5.2E-07 56.4 3.7 27 226-252 89-115 (312)
281 2gk6_A Regulator of nonsense t 94.9 0.014 4.7E-07 62.2 3.6 24 228-251 196-219 (624)
282 4edh_A DTMP kinase, thymidylat 94.8 0.017 5.7E-07 52.9 3.6 32 228-259 7-41 (213)
283 1g8f_A Sulfate adenylyltransfe 94.8 0.012 4.1E-07 61.1 2.9 26 228-253 396-421 (511)
284 2oap_1 GSPE-2, type II secreti 94.8 0.014 4.7E-07 60.7 3.3 27 227-253 260-286 (511)
285 2xxa_A Signal recognition part 94.8 0.023 7.8E-07 57.8 4.8 63 200-262 73-139 (433)
286 2b8t_A Thymidine kinase; deoxy 94.7 0.024 8.3E-07 52.3 4.5 30 229-258 14-46 (223)
287 2r6a_A DNAB helicase, replicat 94.7 0.017 5.9E-07 58.9 3.8 39 223-261 199-241 (454)
288 2v3c_C SRP54, signal recogniti 94.7 0.013 4.6E-07 59.5 2.9 34 227-260 99-135 (432)
289 2f9l_A RAB11B, member RAS onco 94.7 0.017 5.9E-07 51.3 3.3 23 228-250 6-28 (199)
290 1j8m_F SRP54, signal recogniti 94.6 0.02 6.7E-07 55.2 3.7 60 200-262 71-136 (297)
291 3tif_A Uncharacterized ABC tra 94.6 0.015 5E-07 54.1 2.6 28 226-253 30-57 (235)
292 2cbz_A Multidrug resistance-as 94.6 0.014 4.7E-07 54.4 2.4 27 225-251 29-55 (237)
293 1xjc_A MOBB protein homolog; s 94.6 0.021 7E-07 50.5 3.4 32 228-259 5-39 (169)
294 2dyk_A GTP-binding protein; GT 94.6 0.02 6.7E-07 48.4 3.2 22 229-250 3-24 (161)
295 1oix_A RAS-related protein RAB 94.5 0.017 5.8E-07 51.2 2.8 23 229-251 31-53 (191)
296 1lw7_A Transcriptional regulat 94.5 0.018 6.1E-07 56.9 3.3 28 227-254 170-197 (365)
297 2q6t_A DNAB replication FORK h 94.5 0.02 6.9E-07 58.2 3.7 39 223-261 196-238 (444)
298 2px0_A Flagellar biosynthesis 94.5 0.02 6.9E-07 55.1 3.5 59 200-261 80-143 (296)
299 1z2a_A RAS-related protein RAB 94.5 0.021 7.1E-07 48.5 3.2 23 228-250 6-28 (168)
300 3tmk_A Thymidylate kinase; pho 94.5 0.025 8.7E-07 51.9 4.0 31 228-258 6-36 (216)
301 3b85_A Phosphate starvation-in 94.4 0.015 5.2E-07 53.0 2.4 23 228-250 23-45 (208)
302 1nrj_B SR-beta, signal recogni 94.4 0.025 8.7E-07 50.7 3.8 25 227-251 12-36 (218)
303 2pcj_A ABC transporter, lipopr 94.4 0.012 4E-07 54.3 1.5 27 227-253 30-56 (224)
304 2onk_A Molybdate/tungstate ABC 94.4 0.019 6.4E-07 53.6 2.9 26 228-253 25-50 (240)
305 1q57_A DNA primase/helicase; d 94.4 0.027 9.3E-07 58.1 4.4 40 223-262 238-281 (503)
306 1b0u_A Histidine permease; ABC 94.3 0.017 6E-07 54.5 2.6 27 227-253 32-58 (262)
307 3bgw_A DNAB-like replicative h 94.3 0.03 1E-06 57.1 4.5 40 223-262 193-235 (444)
308 3cmw_A Protein RECA, recombina 94.3 0.039 1.3E-06 64.7 5.7 40 223-262 30-72 (1706)
309 1ek0_A Protein (GTP-binding pr 94.2 0.025 8.7E-07 48.0 3.2 22 229-250 5-26 (170)
310 1mv5_A LMRA, multidrug resista 94.2 0.018 6.2E-07 53.7 2.4 28 225-252 26-53 (243)
311 1w36_D RECD, exodeoxyribonucle 94.2 0.023 7.9E-07 60.3 3.5 25 227-251 164-188 (608)
312 3p32_A Probable GTPase RV1496/ 94.2 0.033 1.1E-06 54.9 4.4 32 228-259 80-114 (355)
313 1u8z_A RAS-related protein RAL 94.2 0.027 9.1E-07 47.6 3.2 23 228-250 5-27 (168)
314 2ce2_X GTPase HRAS; signaling 94.2 0.023 8E-07 47.8 2.9 22 229-250 5-26 (166)
315 2pze_A Cystic fibrosis transme 94.2 0.017 5.8E-07 53.4 2.1 27 226-252 33-59 (229)
316 1z0j_A RAB-22, RAS-related pro 94.2 0.027 9.1E-07 47.9 3.2 23 229-251 8-30 (170)
317 3cr8_A Sulfate adenylyltranfer 94.2 0.018 6.1E-07 60.4 2.5 26 227-252 369-394 (552)
318 2olj_A Amino acid ABC transpor 94.2 0.02 6.9E-07 54.2 2.6 28 226-253 49-76 (263)
319 1wms_A RAB-9, RAB9, RAS-relate 94.1 0.027 9.2E-07 48.4 3.2 23 228-250 8-30 (177)
320 1sgw_A Putative ABC transporte 94.1 0.017 5.8E-07 53.0 2.0 27 227-253 35-61 (214)
321 3lv8_A DTMP kinase, thymidylat 94.1 0.027 9.1E-07 52.5 3.3 26 227-252 27-52 (236)
322 1g6h_A High-affinity branched- 94.1 0.018 6.1E-07 54.2 2.1 27 227-253 33-59 (257)
323 2zu0_C Probable ATP-dependent 94.1 0.023 7.9E-07 53.8 2.9 26 226-251 45-70 (267)
324 2ghi_A Transport protein; mult 94.1 0.02 6.7E-07 54.1 2.4 28 225-252 44-71 (260)
325 2wji_A Ferrous iron transport 94.1 0.026 9E-07 48.5 3.1 22 229-250 5-26 (165)
326 2wjy_A Regulator of nonsense t 94.1 0.025 8.7E-07 61.9 3.6 24 228-251 372-395 (800)
327 2ixe_A Antigen peptide transpo 94.1 0.021 7.3E-07 54.2 2.6 29 225-253 43-71 (271)
328 1z08_A RAS-related protein RAB 94.1 0.029 9.7E-07 47.8 3.2 23 228-250 7-29 (170)
329 3sop_A Neuronal-specific septi 94.1 0.023 7.9E-07 53.9 2.8 24 229-252 4-27 (270)
330 1ky3_A GTP-binding protein YPT 94.0 0.029 1E-06 48.2 3.2 23 228-250 9-31 (182)
331 2nzj_A GTP-binding protein REM 94.0 0.028 9.5E-07 48.1 3.0 22 228-249 5-26 (175)
332 1g16_A RAS-related protein SEC 94.0 0.026 8.9E-07 48.0 2.9 23 228-250 4-26 (170)
333 1tf7_A KAIC; homohexamer, hexa 94.0 0.022 7.5E-07 59.2 2.7 29 223-251 277-305 (525)
334 1r2q_A RAS-related protein RAB 94.0 0.031 1.1E-06 47.4 3.2 22 228-249 7-28 (170)
335 2ff7_A Alpha-hemolysin translo 94.0 0.02 6.8E-07 53.6 2.1 27 227-253 35-61 (247)
336 3fvq_A Fe(3+) IONS import ATP- 94.0 0.024 8.2E-07 56.2 2.8 27 227-253 30-56 (359)
337 2d2e_A SUFC protein; ABC-ATPas 94.0 0.022 7.5E-07 53.4 2.4 24 227-250 29-52 (250)
338 2zej_A Dardarin, leucine-rich 93.9 0.024 8.3E-07 49.6 2.5 21 229-249 4-24 (184)
339 1tf7_A KAIC; homohexamer, hexa 93.9 0.023 7.8E-07 59.1 2.7 29 223-251 35-65 (525)
340 2h57_A ADP-ribosylation factor 93.9 0.028 9.5E-07 49.3 2.9 24 228-251 22-45 (190)
341 1vpl_A ABC transporter, ATP-bi 93.9 0.024 8.3E-07 53.4 2.6 28 226-253 40-67 (256)
342 1ji0_A ABC transporter; ATP bi 93.9 0.021 7.1E-07 53.2 2.1 27 227-253 32-58 (240)
343 1c1y_A RAS-related protein RAP 93.9 0.033 1.1E-06 47.2 3.2 22 229-250 5-26 (167)
344 2erx_A GTP-binding protein DI- 93.9 0.027 9.3E-07 47.9 2.7 21 229-249 5-25 (172)
345 3gfo_A Cobalt import ATP-bindi 93.9 0.021 7.1E-07 54.4 2.1 26 227-252 34-59 (275)
346 4hlc_A DTMP kinase, thymidylat 93.9 0.069 2.4E-06 48.4 5.5 46 229-274 4-52 (205)
347 2qi9_C Vitamin B12 import ATP- 93.9 0.019 6.6E-07 53.8 1.8 27 227-253 26-52 (249)
348 2it1_A 362AA long hypothetical 93.9 0.027 9.1E-07 55.9 2.9 26 227-252 29-54 (362)
349 3bc1_A RAS-related protein RAB 93.9 0.033 1.1E-06 48.4 3.2 23 228-250 12-34 (195)
350 2yyz_A Sugar ABC transporter, 93.9 0.027 9.2E-07 55.8 2.9 26 227-252 29-54 (359)
351 1r8s_A ADP-ribosylation factor 93.9 0.034 1.2E-06 47.1 3.2 21 230-250 3-23 (164)
352 2yz2_A Putative ABC transporte 93.8 0.024 8.2E-07 53.7 2.4 27 226-252 32-58 (266)
353 2gza_A Type IV secretion syste 93.8 0.017 6E-07 57.1 1.5 28 226-253 174-201 (361)
354 1yrb_A ATP(GTP)binding protein 93.8 0.048 1.6E-06 50.6 4.5 32 228-259 15-48 (262)
355 3q85_A GTP-binding protein REM 93.8 0.033 1.1E-06 47.4 3.1 21 229-249 4-24 (169)
356 2ffh_A Protein (FFH); SRP54, s 93.8 0.046 1.6E-06 55.4 4.5 59 200-260 73-134 (425)
357 2wjg_A FEOB, ferrous iron tran 93.8 0.029 9.9E-07 48.9 2.7 23 228-250 8-30 (188)
358 1v43_A Sugar-binding transport 93.8 0.028 9.6E-07 55.9 2.9 27 227-253 37-63 (372)
359 3rlf_A Maltose/maltodextrin im 93.8 0.03 1E-06 55.9 3.1 27 227-253 29-55 (381)
360 2hxs_A RAB-26, RAS-related pro 93.7 0.031 1.1E-06 48.1 2.8 22 228-249 7-28 (178)
361 3ld9_A DTMP kinase, thymidylat 93.7 0.034 1.2E-06 51.3 3.2 30 228-257 22-55 (223)
362 1upt_A ARL1, ADP-ribosylation 93.7 0.037 1.3E-06 47.2 3.2 22 228-249 8-29 (171)
363 1z47_A CYSA, putative ABC-tran 93.7 0.025 8.7E-07 55.9 2.4 26 227-252 41-66 (355)
364 1f2t_A RAD50 ABC-ATPase; DNA d 93.7 0.034 1.2E-06 47.7 3.0 23 229-251 25-47 (149)
365 4dsu_A GTPase KRAS, isoform 2B 93.7 0.036 1.2E-06 48.0 3.2 22 229-250 6-27 (189)
366 2y8e_A RAB-protein 6, GH09086P 93.7 0.033 1.1E-06 47.8 2.9 23 228-250 15-37 (179)
367 2ihy_A ABC transporter, ATP-bi 93.7 0.023 8E-07 54.2 2.1 27 227-253 47-73 (279)
368 2nq2_C Hypothetical ABC transp 93.7 0.023 8E-07 53.4 2.0 26 227-252 31-56 (253)
369 2pt7_A CAG-ALFA; ATPase, prote 93.7 0.023 8E-07 55.5 2.1 27 227-253 171-197 (330)
370 3clv_A RAB5 protein, putative; 93.7 0.037 1.3E-06 48.4 3.2 23 228-250 8-30 (208)
371 1z0f_A RAB14, member RAS oncog 93.6 0.038 1.3E-06 47.3 3.2 24 227-250 15-38 (179)
372 2oil_A CATX-8, RAS-related pro 93.6 0.038 1.3E-06 48.5 3.3 23 228-250 26-48 (193)
373 2f1r_A Molybdopterin-guanine d 93.6 0.021 7.2E-07 50.4 1.5 25 228-252 3-27 (171)
374 3d31_A Sulfate/molybdate ABC t 93.6 0.024 8.2E-07 55.9 2.1 27 227-253 26-52 (348)
375 2f7s_A C25KG, RAS-related prot 93.6 0.19 6.5E-06 44.8 8.0 22 228-249 26-47 (217)
376 3q72_A GTP-binding protein RAD 93.6 0.031 1.1E-06 47.5 2.5 21 229-249 4-24 (166)
377 2qm8_A GTPase/ATPase; G protei 93.6 0.043 1.5E-06 53.8 3.8 25 227-251 55-79 (337)
378 2www_A Methylmalonic aciduria 93.6 0.11 3.8E-06 51.0 6.9 24 228-251 75-98 (349)
379 2xzl_A ATP-dependent helicase 93.6 0.036 1.2E-06 60.7 3.6 32 229-260 377-412 (802)
380 4g1u_C Hemin import ATP-bindin 93.6 0.022 7.7E-07 53.9 1.7 27 227-253 37-63 (266)
381 4tmk_A Protein (thymidylate ki 93.6 0.034 1.2E-06 50.9 2.8 24 228-251 4-27 (213)
382 2efe_B Small GTP-binding prote 93.5 0.04 1.4E-06 47.5 3.2 23 228-250 13-35 (181)
383 2lkc_A Translation initiation 93.5 0.045 1.5E-06 47.0 3.5 23 227-249 8-30 (178)
384 2a9k_A RAS-related protein RAL 93.5 0.041 1.4E-06 47.5 3.2 23 228-250 19-41 (187)
385 3con_A GTPase NRAS; structural 93.5 0.041 1.4E-06 48.1 3.2 23 228-250 22-44 (190)
386 1g29_1 MALK, maltose transport 93.5 0.029 9.8E-07 55.9 2.4 26 227-252 29-54 (372)
387 2wsm_A Hydrogenase expression/ 93.5 0.037 1.3E-06 49.8 3.0 25 228-252 31-55 (221)
388 2obl_A ESCN; ATPase, hydrolase 93.5 0.053 1.8E-06 53.4 4.3 30 228-257 72-101 (347)
389 1m7b_A RND3/RHOE small GTP-bin 93.5 0.037 1.3E-06 48.3 2.9 23 228-250 8-30 (184)
390 3cmu_A Protein RECA, recombina 93.5 0.041 1.4E-06 65.4 4.0 46 216-261 369-420 (2050)
391 3t1o_A Gliding protein MGLA; G 93.4 0.042 1.4E-06 47.9 3.2 24 228-251 15-38 (198)
392 2bme_A RAB4A, RAS-related prot 93.4 0.038 1.3E-06 48.0 2.9 23 228-250 11-33 (186)
393 2fn4_A P23, RAS-related protei 93.4 0.038 1.3E-06 47.5 2.8 23 228-250 10-32 (181)
394 3tw8_B RAS-related protein RAB 93.4 0.04 1.4E-06 47.3 2.9 22 228-249 10-31 (181)
395 2pjz_A Hypothetical protein ST 93.4 0.031 1.1E-06 52.9 2.3 25 227-251 30-54 (263)
396 2gj8_A MNME, tRNA modification 93.3 0.033 1.1E-06 48.3 2.3 22 229-250 6-27 (172)
397 2gf9_A RAS-related protein RAB 93.3 0.047 1.6E-06 47.8 3.2 23 228-250 23-45 (189)
398 2g6b_A RAS-related protein RAB 93.3 0.047 1.6E-06 46.9 3.2 23 228-250 11-33 (180)
399 1oxx_K GLCV, glucose, ABC tran 93.3 0.024 8.1E-07 56.1 1.4 26 227-252 31-56 (353)
400 1ls1_A Signal recognition part 93.3 0.067 2.3E-06 51.4 4.5 34 227-260 98-134 (295)
401 2atv_A RERG, RAS-like estrogen 93.3 0.051 1.8E-06 47.9 3.5 24 227-250 28-51 (196)
402 3kkq_A RAS-related protein M-R 93.3 0.048 1.6E-06 47.2 3.2 23 228-250 19-41 (183)
403 1svi_A GTP-binding protein YSX 93.2 0.034 1.2E-06 48.7 2.2 24 227-250 23-46 (195)
404 2fz4_A DNA repair protein RAD2 93.2 0.074 2.5E-06 49.1 4.6 32 229-260 110-141 (237)
405 3tkl_A RAS-related protein RAB 93.2 0.05 1.7E-06 47.6 3.2 23 228-250 17-39 (196)
406 2p5s_A RAS and EF-hand domain 93.1 0.054 1.8E-06 47.9 3.4 24 227-250 28-51 (199)
407 1mh1_A RAC1; GTP-binding, GTPa 93.1 0.054 1.9E-06 46.8 3.4 23 228-250 6-28 (186)
408 1m2o_B GTP-binding protein SAR 93.1 0.045 1.5E-06 48.3 2.9 22 228-249 24-45 (190)
409 1x3s_A RAS-related protein RAB 93.1 0.052 1.8E-06 47.4 3.2 23 228-250 16-38 (195)
410 3bwd_D RAC-like GTP-binding pr 93.1 0.053 1.8E-06 46.7 3.2 23 228-250 9-31 (182)
411 2bbs_A Cystic fibrosis transme 93.1 0.033 1.1E-06 53.4 2.1 27 226-252 63-89 (290)
412 2bov_A RAla, RAS-related prote 93.1 0.052 1.8E-06 47.9 3.2 23 228-250 15-37 (206)
413 3c5c_A RAS-like protein 12; GD 93.0 0.053 1.8E-06 47.6 3.2 23 228-250 22-44 (187)
414 2cxx_A Probable GTP-binding pr 93.0 0.043 1.5E-06 47.7 2.6 22 229-250 3-24 (190)
415 2gks_A Bifunctional SAT/APS ki 93.0 0.05 1.7E-06 57.0 3.4 32 228-259 373-407 (546)
416 3gd7_A Fusion complex of cysti 93.0 0.04 1.4E-06 55.2 2.6 27 225-251 45-71 (390)
417 2dpy_A FLII, flagellum-specifi 93.0 0.077 2.6E-06 53.9 4.7 29 228-256 158-186 (438)
418 1zd9_A ADP-ribosylation factor 93.0 0.055 1.9E-06 47.4 3.2 23 228-250 23-45 (188)
419 1z06_A RAS-related protein RAB 93.0 0.055 1.9E-06 47.3 3.2 23 228-250 21-43 (189)
420 1vg8_A RAS-related protein RAB 93.0 0.054 1.9E-06 47.9 3.2 23 228-250 9-31 (207)
421 2iwr_A Centaurin gamma 1; ANK 93.0 0.041 1.4E-06 47.4 2.3 23 228-250 8-30 (178)
422 2a5j_A RAS-related protein RAB 92.9 0.057 2E-06 47.4 3.3 23 228-250 22-44 (191)
423 3ihw_A Centg3; RAS, centaurin, 92.9 0.057 1.9E-06 47.4 3.2 22 229-250 22-43 (184)
424 1pui_A ENGB, probable GTP-bind 92.9 0.026 9E-07 50.3 1.0 25 227-251 26-50 (210)
425 2npi_A Protein CLP1; CLP1-PCF1 92.9 0.048 1.7E-06 55.8 3.1 28 224-251 135-162 (460)
426 3dz8_A RAS-related protein RAB 92.9 0.051 1.7E-06 47.7 2.9 23 229-251 25-47 (191)
427 2fg5_A RAB-22B, RAS-related pr 92.9 0.05 1.7E-06 47.8 2.8 23 228-250 24-46 (192)
428 3hjn_A DTMP kinase, thymidylat 92.9 0.15 5E-06 45.8 6.0 32 230-261 3-37 (197)
429 3reg_A RHO-like small GTPase; 92.9 0.059 2E-06 47.3 3.2 23 228-250 24-46 (194)
430 1dek_A Deoxynucleoside monopho 92.9 0.045 1.5E-06 51.1 2.6 27 229-255 3-29 (241)
431 3cph_A RAS-related protein SEC 92.8 0.058 2E-06 47.9 3.2 23 228-250 21-43 (213)
432 2vp4_A Deoxynucleoside kinase; 92.8 0.059 2E-06 49.4 3.3 29 229-258 22-50 (230)
433 1zbd_A Rabphilin-3A; G protein 92.8 0.05 1.7E-06 48.1 2.7 23 228-250 9-31 (203)
434 2qag_B Septin-6, protein NEDD5 92.8 0.054 1.9E-06 54.8 3.2 21 230-250 45-65 (427)
435 3k53_A Ferrous iron transport 92.8 0.042 1.4E-06 51.7 2.3 23 228-250 4-26 (271)
436 2bcg_Y Protein YP2, GTP-bindin 92.8 0.053 1.8E-06 48.1 2.9 23 228-250 9-31 (206)
437 3vr4_A V-type sodium ATPase ca 92.8 0.32 1.1E-05 50.8 9.0 46 229-275 234-279 (600)
438 3t5g_A GTP-binding protein RHE 92.8 0.055 1.9E-06 46.7 2.9 22 228-249 7-28 (181)
439 1fzq_A ADP-ribosylation factor 92.7 0.077 2.6E-06 46.3 3.8 24 227-250 16-39 (181)
440 3pqc_A Probable GTP-binding pr 92.7 0.056 1.9E-06 47.1 2.8 23 228-250 24-46 (195)
441 2rcn_A Probable GTPase ENGC; Y 92.6 0.045 1.5E-06 54.1 2.4 25 228-252 216-240 (358)
442 3oes_A GTPase rhebl1; small GT 92.6 0.057 1.9E-06 47.8 2.9 23 228-250 25-47 (201)
443 2hf9_A Probable hydrogenase ni 92.6 0.056 1.9E-06 48.8 2.9 24 228-251 39-62 (226)
444 3nh6_A ATP-binding cassette SU 92.6 0.039 1.3E-06 53.4 1.8 30 224-253 77-106 (306)
445 1tq4_A IIGP1, interferon-induc 92.6 0.11 3.6E-06 52.5 5.0 22 229-250 71-92 (413)
446 1u0l_A Probable GTPase ENGC; p 92.6 0.047 1.6E-06 52.5 2.4 25 228-252 170-194 (301)
447 1moz_A ARL1, ADP-ribosylation 92.5 0.065 2.2E-06 46.2 3.1 24 226-249 17-40 (183)
448 1ko7_A HPR kinase/phosphatase; 92.5 0.077 2.6E-06 51.5 3.8 29 227-256 144-172 (314)
449 2p67_A LAO/AO transport system 92.5 0.098 3.3E-06 51.2 4.6 25 227-251 56-80 (341)
450 1qhl_A Protein (cell division 92.5 0.029 9.9E-07 51.9 0.7 23 231-253 31-53 (227)
451 1gwn_A RHO-related GTP-binding 92.5 0.061 2.1E-06 48.2 2.9 23 228-250 29-51 (205)
452 2gf0_A GTP-binding protein DI- 92.5 0.061 2.1E-06 47.1 2.8 22 228-249 9-30 (199)
453 1ksh_A ARF-like protein 2; sma 92.5 0.063 2.2E-06 46.6 2.9 24 227-250 18-41 (186)
454 3tui_C Methionine import ATP-b 92.5 0.058 2E-06 53.5 2.9 27 226-252 53-79 (366)
455 2fu5_C RAS-related protein RAB 92.4 0.041 1.4E-06 47.7 1.6 23 227-249 8-30 (183)
456 2fh5_B SR-beta, signal recogni 92.4 0.073 2.5E-06 47.5 3.2 24 227-250 7-30 (214)
457 3lxx_A GTPase IMAP family memb 92.4 0.059 2E-06 49.4 2.7 23 228-250 30-52 (239)
458 1knx_A Probable HPR(Ser) kinas 92.4 0.062 2.1E-06 52.1 2.9 30 227-257 147-176 (312)
459 3qks_A DNA double-strand break 92.3 0.067 2.3E-06 48.3 2.9 25 229-253 25-49 (203)
460 1t6n_A Probable ATP-dependent 92.3 0.092 3.2E-06 47.2 3.8 60 188-250 12-74 (220)
461 2ew1_A RAS-related protein RAB 92.2 0.068 2.3E-06 47.8 2.9 23 228-250 27-49 (201)
462 3ch4_B Pmkase, phosphomevalona 92.2 0.11 3.6E-06 47.2 4.1 38 225-262 9-47 (202)
463 2qe7_A ATP synthase subunit al 92.2 0.27 9.4E-06 50.5 7.6 48 230-277 165-213 (502)
464 2cjw_A GTP-binding protein GEM 92.2 0.084 2.9E-06 46.6 3.4 22 229-250 8-29 (192)
465 2b6h_A ADP-ribosylation factor 92.2 0.069 2.4E-06 47.1 2.8 23 227-249 29-51 (192)
466 1xx6_A Thymidine kinase; NESG, 92.2 0.13 4.3E-06 46.2 4.5 32 228-259 9-43 (191)
467 1qde_A EIF4A, translation init 92.1 0.073 2.5E-06 48.0 2.9 59 190-251 14-76 (224)
468 2atx_A Small GTP binding prote 92.1 0.074 2.5E-06 46.6 2.8 23 228-250 19-41 (194)
469 2qtf_A Protein HFLX, GTP-bindi 92.1 0.12 4.1E-06 51.2 4.6 22 229-250 181-202 (364)
470 2yv5_A YJEQ protein; hydrolase 92.0 0.091 3.1E-06 50.5 3.6 24 228-252 166-189 (302)
471 1f6b_A SAR1; gtpases, N-termin 92.0 0.06 2E-06 47.8 2.1 22 228-249 26-47 (198)
472 1zj6_A ADP-ribosylation factor 92.0 0.074 2.5E-06 46.4 2.7 23 227-249 16-38 (187)
473 2fv8_A H6, RHO-related GTP-bin 92.0 0.077 2.6E-06 47.3 2.8 23 228-250 26-48 (207)
474 2q3h_A RAS homolog gene family 91.9 0.085 2.9E-06 46.5 3.1 22 228-249 21-42 (201)
475 2h17_A ADP-ribosylation factor 91.9 0.059 2E-06 46.8 1.9 23 228-250 22-44 (181)
476 2o52_A RAS-related protein RAB 91.8 0.077 2.6E-06 47.1 2.7 23 227-249 25-47 (200)
477 2gco_A H9, RHO-related GTP-bin 91.8 0.082 2.8E-06 46.9 2.9 23 228-250 26-48 (201)
478 3cbq_A GTP-binding protein REM 91.8 0.07 2.4E-06 47.3 2.4 22 228-249 24-45 (195)
479 2il1_A RAB12; G-protein, GDP, 91.8 0.085 2.9E-06 46.4 2.9 22 228-249 27-48 (192)
480 3cpj_B GTP-binding protein YPT 91.8 0.094 3.2E-06 47.4 3.2 23 228-250 14-36 (223)
481 2hup_A RAS-related protein RAB 91.7 0.085 2.9E-06 46.9 2.8 23 228-250 30-52 (201)
482 2gxq_A Heat resistant RNA depe 91.7 0.053 1.8E-06 48.2 1.4 24 228-251 39-63 (207)
483 4bas_A ADP-ribosylation factor 91.7 0.088 3E-06 46.1 2.9 23 227-249 17-39 (199)
484 2j0v_A RAC-like GTP-binding pr 91.7 0.087 3E-06 46.9 2.9 23 228-250 10-32 (212)
485 1fx0_A ATP synthase alpha chai 91.6 0.25 8.7E-06 50.8 6.5 48 230-277 166-214 (507)
486 2qu8_A Putative nucleolar GTP- 91.5 0.073 2.5E-06 48.4 2.2 23 228-250 30-52 (228)
487 2c61_A A-type ATP synthase non 91.5 0.3 1E-05 49.9 6.9 24 230-253 155-178 (469)
488 1hv8_A Putative ATP-dependent 91.5 0.16 5.4E-06 48.9 4.7 58 190-250 6-67 (367)
489 3qf7_A RAD50; ABC-ATPase, ATPa 91.4 0.1 3.5E-06 51.6 3.2 23 229-251 25-47 (365)
490 3a1s_A Iron(II) transport prot 91.3 0.086 2.9E-06 49.4 2.5 22 228-249 6-27 (258)
491 3q3j_B RHO-related GTP-binding 91.3 0.11 3.8E-06 46.7 3.2 23 228-250 28-50 (214)
492 3euj_A Chromosome partition pr 91.3 0.14 4.7E-06 52.7 4.3 25 228-252 30-54 (483)
493 3oaa_A ATP synthase subunit al 91.3 0.31 1E-05 50.1 6.7 47 229-275 164-211 (513)
494 2j1l_A RHO-related GTP-binding 91.3 0.093 3.2E-06 47.1 2.7 22 228-249 35-56 (214)
495 4gzl_A RAS-related C3 botulinu 91.3 0.1 3.5E-06 46.5 2.9 24 227-250 30-53 (204)
496 1yqt_A RNAse L inhibitor; ATP- 91.2 0.1 3.6E-06 54.4 3.3 27 226-252 46-72 (538)
497 3iby_A Ferrous iron transport 91.2 0.093 3.2E-06 49.2 2.6 22 229-250 3-24 (256)
498 3b1v_A Ferrous iron uptake tra 91.2 0.11 3.7E-06 49.3 3.0 22 229-250 5-26 (272)
499 2yc2_C IFT27, small RAB-relate 91.0 0.052 1.8E-06 47.9 0.6 22 229-250 22-43 (208)
500 3geh_A MNME, tRNA modification 91.0 0.21 7.3E-06 51.0 5.3 22 229-250 226-247 (462)
No 1
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=4.8e-40 Score=332.00 Aligned_cols=214 Identities=23% Similarity=0.305 Sum_probs=177.5
Q ss_pred CCCCccccccChhhHHHHHHHHHHHHhCHHHHHHhCCCCCceeEEeCCCCCcHHHHHHHHHHHcCCCeEEecccCcC---
Q 035603 188 HPATFDTLAMASKKKEAIKKDLIKFTEGKEYYAKIGKAWKRGYLLFGPPGTGKSTMIAAMANCLNYDVYDLELTSVE--- 264 (431)
Q Consensus 188 ~p~~f~~l~g~~~~k~~i~~~l~~~~~~~~~~~~~g~~~~rg~LL~GPPGtGKTsla~aiA~~l~~~i~~l~~~~~~--- 264 (431)
+..+|++|+|.+++|++|.+.+..++.+|+.|.++|+++|+|+|||||||||||++|+|+|++++.+|+.++++++.
T Consensus 143 p~v~~~dIgGl~~~k~~l~e~v~~Pl~~pe~f~~~gi~~prGvLL~GPPGTGKTllAkAiA~e~~~~f~~v~~s~l~sk~ 222 (405)
T 4b4t_J 143 PDSTYDMVGGLTKQIKEIKEVIELPVKHPELFESLGIAQPKGVILYGPPGTGKTLLARAVAHHTDCKFIRVSGAELVQKY 222 (405)
T ss_dssp CSCCGGGSCSCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCCCEEEESCSSSSHHHHHHHHHHHHTCEEEEEEGGGGSCSS
T ss_pred CCCCHHHhCCHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCceEEeCCCCCCHHHHHHHHHHhhCCCceEEEhHHhhccc
Confidence 34899999999999999999999999999999999999999999999999999999999999999999999998763
Q ss_pred ---ChHHHHHHHHHhhhc------------------------ccchhhHHHHHHHHhcCcccCCCCceEEEEecCCCCCC
Q 035603 265 ---NNNELRSLLVDISSK------------------------KKKSNVTLSGLLNCIGGLWSTCGGERIIVFTTNHVDKL 317 (431)
Q Consensus 265 ---~~~~l~~l~~~~~~~------------------------~~~~~~~~s~lL~~ldg~~~~~~~~~ivI~TTN~~~~L 317 (431)
+...++.+|..+... +.....++++||+.|||+.+. ++++||+|||+|+.|
T Consensus 223 vGese~~vr~lF~~Ar~~aP~IIFiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~~~--~~V~vIaATNrpd~L 300 (405)
T 4b4t_J 223 IGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSTRVEGSGGGDSEVQRTMLELLNQLDGFETS--KNIKIIMATNRLDIL 300 (405)
T ss_dssp TTHHHHHHHHHHHHHHHTCSEEEEEESSSCCTTSCSCSSSGGGGHHHHHHHHHHHHHHTTTCC--CCEEEEEEESCSSSS
T ss_pred cchHHHHHHHHHHHHHHhCCceEeeecchhhccCCCCCCCCCcHHHHHHHHHHHHhhhccCCC--CCeEEEeccCChhhC
Confidence 346789999877654 112346799999999999765 449999999999999
Q ss_pred ChhhhccCceeEEEEcCCCCHHHHHHHHHHhhchhcchhHHHHHhHhcc-CCCCHHHHHHHhcccC----CCCCHHHHHH
Q 035603 318 DPALIRRGRMDKHIEMPYCCFEAFKVLAKNYLEIESHELFHEIGSLLGE-TDITPADVAENLMPKS----DEDDAGTCLK 392 (431)
Q Consensus 318 d~AllRpGRfd~~I~~~~p~~~~r~~i~~~~l~~~~~~~~~~i~~l~~~-~~~s~adI~~~l~~~~----~~~~~~~~l~ 392 (431)
||||+||||||++|+||+|+.++|.+|++.++.........++..++.. .|||+|||..+|..+. ..+......+
T Consensus 301 DpAllRpGRfD~~I~i~lPd~~~R~~Il~~~~~~~~l~~dvdl~~lA~~t~G~SGADi~~l~~eA~~~Air~~~~~vt~~ 380 (405)
T 4b4t_J 301 DPALLRPGRIDRKIEFPPPSVAARAEILRIHSRKMNLTRGINLRKVAEKMNGCSGADVKGVCTEAGMYALRERRIHVTQE 380 (405)
T ss_dssp CHHHHSTTSSCCEEECCCCCHHHHHHHHHHHHTTSBCCSSCCHHHHHHHCCSCCHHHHHHHHHHHHHHHHHTTCSBCCHH
T ss_pred CHhHcCCCcCceEEEcCCcCHHHHHHHHHHHhcCCCCCccCCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHcCCCCcCHH
Confidence 9999999999999999999999999999999875443322345666664 4999999998876421 1122234567
Q ss_pred HHHHHHHHHHH
Q 035603 393 NLIEALKAAKE 403 (431)
Q Consensus 393 ~l~~~l~~~~~ 403 (431)
++..|+++...
T Consensus 381 Df~~Al~~v~~ 391 (405)
T 4b4t_J 381 DFELAVGKVMN 391 (405)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHhC
Confidence 78888876644
No 2
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1e-39 Score=330.59 Aligned_cols=214 Identities=20% Similarity=0.280 Sum_probs=176.3
Q ss_pred CCCCccccccChhhHHHHHHHHHHHHhCHHHHHHhCCCCCceeEEeCCCCCcHHHHHHHHHHHcCCCeEEecccCcC---
Q 035603 188 HPATFDTLAMASKKKEAIKKDLIKFTEGKEYYAKIGKAWKRGYLLFGPPGTGKSTMIAAMANCLNYDVYDLELTSVE--- 264 (431)
Q Consensus 188 ~p~~f~~l~g~~~~k~~i~~~l~~~~~~~~~~~~~g~~~~rg~LL~GPPGtGKTsla~aiA~~l~~~i~~l~~~~~~--- 264 (431)
+..+|++|+|.+++|++|.+.+..|+.++++|..+|+++|+|+|||||||||||++|+|+|++++.+|+.++.+++.
T Consensus 177 p~v~~~DIgGld~~k~~L~e~v~~Pl~~pe~f~~~Gi~~prGvLLyGPPGTGKTlLAkAiA~e~~~~fi~v~~s~l~sk~ 256 (437)
T 4b4t_I 177 PTESYSDIGGLESQIQEIKESVELPLTHPELYEEMGIKPPKGVILYGAPGTGKTLLAKAVANQTSATFLRIVGSELIQKY 256 (437)
T ss_dssp CCCCGGGTCSCHHHHHHHHHHHHHHHHCCHHHHHHTCCCCSEEEEESSTTTTHHHHHHHHHHHHTCEEEEEESGGGCCSS
T ss_pred CCCcceecCcHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCCCceECCCCchHHHHHHHHHHHhCCCEEEEEHHHhhhcc
Confidence 44899999999999999999999999999999999999999999999999999999999999999999999988763
Q ss_pred ---ChHHHHHHHHHhhhc------------------------ccchhhHHHHHHHHhcCcccCCCCceEEEEecCCCCCC
Q 035603 265 ---NNNELRSLLVDISSK------------------------KKKSNVTLSGLLNCIGGLWSTCGGERIIVFTTNHVDKL 317 (431)
Q Consensus 265 ---~~~~l~~l~~~~~~~------------------------~~~~~~~~s~lL~~ldg~~~~~~~~~ivI~TTN~~~~L 317 (431)
+...++.+|..+... ......++++||+.+||+... ++++||+|||+|+.|
T Consensus 257 vGesek~ir~lF~~Ar~~aP~IIfiDEiDai~~~R~~~~~~~~~~~~~~l~~LL~~lDg~~~~--~~ViVIaATNrpd~L 334 (437)
T 4b4t_I 257 LGDGPRLCRQIFKVAGENAPSIVFIDEIDAIGTKRYDSNSGGEREIQRTMLELLNQLDGFDDR--GDVKVIMATNKIETL 334 (437)
T ss_dssp SSHHHHHHHHHHHHHHHTCSEEEEEEEESSSSCCCSCSSCSSCCHHHHHHHHHHHHHHHCCCS--SSEEEEEEESCSTTC
T ss_pred CchHHHHHHHHHHHHHhcCCcEEEEehhhhhcccCCCCCCCccHHHHHHHHHHHHHhhCcCCC--CCEEEEEeCCChhhc
Confidence 345688888877654 112356899999999999654 459999999999999
Q ss_pred ChhhhccCceeEEEEcCCCCHHHHHHHHHHhhchhcchhHHHHHhHhcc-CCCCHHHHHHHhcccC----CCCCHHHHHH
Q 035603 318 DPALIRRGRMDKHIEMPYCCFEAFKVLAKNYLEIESHELFHEIGSLLGE-TDITPADVAENLMPKS----DEDDAGTCLK 392 (431)
Q Consensus 318 d~AllRpGRfd~~I~~~~p~~~~r~~i~~~~l~~~~~~~~~~i~~l~~~-~~~s~adI~~~l~~~~----~~~~~~~~l~ 392 (431)
||||+||||||++|+|++|+.++|++|++.|+.........+++.++.. .|||+|||..+|..+. .........+
T Consensus 335 DpALlRpGRfD~~I~v~lPd~~~R~~Il~~~l~~~~l~~dvdl~~LA~~T~GfSGADI~~l~~eA~~~Air~~~~~It~e 414 (437)
T 4b4t_I 335 DPALIRPGRIDRKILFENPDLSTKKKILGIHTSKMNLSEDVNLETLVTTKDDLSGADIQAMCTEAGLLALRERRMQVTAE 414 (437)
T ss_dssp CTTSSCTTTEEEEECCCCCCHHHHHHHHHHHHTTSCBCSCCCHHHHHHHCCSCCHHHHHHHHHHHHHHHHHTTCSCBCHH
T ss_pred CHHHhcCCceeEEEEcCCcCHHHHHHHHHHHhcCCCCCCcCCHHHHHHhCCCCCHHHHHHHHHHHHHHHHHcCCCccCHH
Confidence 9999999999999999999999999999999875443322245666663 4999999998876421 1112234567
Q ss_pred HHHHHHHHHHH
Q 035603 393 NLIEALKAAKE 403 (431)
Q Consensus 393 ~l~~~l~~~~~ 403 (431)
+|..|+++...
T Consensus 415 Df~~Al~rv~~ 425 (437)
T 4b4t_I 415 DFKQAKERVMK 425 (437)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHhC
Confidence 77777776544
No 3
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=5.3e-39 Score=328.83 Aligned_cols=213 Identities=21% Similarity=0.317 Sum_probs=176.1
Q ss_pred CCCCccccccChhhHHHHHHHHHHHHhCHHHHHHhCCCCCceeEEeCCCCCcHHHHHHHHHHHcCCCeEEecccCcC---
Q 035603 188 HPATFDTLAMASKKKEAIKKDLIKFTEGKEYYAKIGKAWKRGYLLFGPPGTGKSTMIAAMANCLNYDVYDLELTSVE--- 264 (431)
Q Consensus 188 ~p~~f~~l~g~~~~k~~i~~~l~~~~~~~~~~~~~g~~~~rg~LL~GPPGtGKTsla~aiA~~l~~~i~~l~~~~~~--- 264 (431)
+..+|++|+|.+++|++|.+.+..|+.+|+.|.++|+++|+|+|||||||||||++|+|+|++++.+|+.++++++.
T Consensus 176 p~v~~~digGl~~~k~~l~e~v~~pl~~p~~f~~~g~~~prGvLL~GPPGtGKTllAkAiA~e~~~~~~~v~~s~l~sk~ 255 (437)
T 4b4t_L 176 GEITFDGIGGLTEQIRELREVIELPLKNPEIFQRVGIKPPKGVLLYGPPGTGKTLLAKAVAATIGANFIFSPASGIVDKY 255 (437)
T ss_dssp CSSCSGGGCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCCEEEEESCTTSSHHHHHHHHHHHHTCEEEEEEGGGTCCSS
T ss_pred CCCChhHhCChHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCeEEEECCCCCcHHHHHHHHHHHhCCCEEEEehhhhcccc
Confidence 34899999999999999999999999999999999999999999999999999999999999999999999998763
Q ss_pred ---ChHHHHHHHHHhhhc------------------------ccchhhHHHHHHHHhcCcccCCCCceEEEEecCCCCCC
Q 035603 265 ---NNNELRSLLVDISSK------------------------KKKSNVTLSGLLNCIGGLWSTCGGERIIVFTTNHVDKL 317 (431)
Q Consensus 265 ---~~~~l~~l~~~~~~~------------------------~~~~~~~~s~lL~~ldg~~~~~~~~~ivI~TTN~~~~L 317 (431)
+...++.+|..+... +.....++++||+.|||+.+. ++++||+|||+|+.|
T Consensus 256 ~Gese~~ir~~F~~A~~~~P~IifiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~~~--~~vivI~ATNrp~~L 333 (437)
T 4b4t_L 256 IGESARIIREMFAYAKEHEPCIIFMDEVDAIGGRRFSEGTSADREIQRTLMELLTQMDGFDNL--GQTKIIMATNRPDTL 333 (437)
T ss_dssp SSHHHHHHHHHHHHHHHSCSEEEEEECCCSSSCCCSSSCCSSTTHHHHHHHHHHHHHHSSSCT--TSSEEEEEESSTTSS
T ss_pred chHHHHHHHHHHHHHHhcCCceeeeecccccccccccCCCCcchHHHHHHHHHHHHhhcccCC--CCeEEEEecCCchhh
Confidence 345688888877654 112356789999999999765 459999999999999
Q ss_pred ChhhhccCceeEEEEcCCCCHHHHHHHHHHhhchhcchhHHHHHhHhcc-CCCCHHHHHHHhcccC----CCCCHHHHHH
Q 035603 318 DPALIRRGRMDKHIEMPYCCFEAFKVLAKNYLEIESHELFHEIGSLLGE-TDITPADVAENLMPKS----DEDDAGTCLK 392 (431)
Q Consensus 318 d~AllRpGRfd~~I~~~~p~~~~r~~i~~~~l~~~~~~~~~~i~~l~~~-~~~s~adI~~~l~~~~----~~~~~~~~l~ 392 (431)
||||+||||||++|+||+|+.++|..|++.|+.........++..++.. .|||+|||..+|..+. ..+......+
T Consensus 334 DpAllRpGRfD~~I~i~lPd~~~R~~Il~~~~~~~~~~~d~dl~~lA~~t~G~sGADi~~l~~eA~~~air~~~~~i~~~ 413 (437)
T 4b4t_L 334 DPALLRPGRLDRKVEIPLPNEAGRLEIFKIHTAKVKKTGEFDFEAAVKMSDGFNGADIRNCATEAGFFAIRDDRDHINPD 413 (437)
T ss_dssp CTTTTSTTSEEEEECCCCCCHHHHHHHHHHHHHTSCBCSCCCHHHHHHTCCSCCHHHHHHHHHHHHHHHHHTTCSSBCHH
T ss_pred CHHHhCCCccceeeecCCcCHHHHHHHHHHHhcCCCCCcccCHHHHHHhCCCCCHHHHHHHHHHHHHHHHHcCCCCCCHH
Confidence 9999999999999999999999999999999875443322345666664 4999999998875421 1112234567
Q ss_pred HHHHHHHHHH
Q 035603 393 NLIEALKAAK 402 (431)
Q Consensus 393 ~l~~~l~~~~ 402 (431)
+|..|+++..
T Consensus 414 d~~~Al~~v~ 423 (437)
T 4b4t_L 414 DLMKAVRKVA 423 (437)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 8888887654
No 4
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=5.2e-39 Score=328.62 Aligned_cols=193 Identities=22% Similarity=0.308 Sum_probs=164.6
Q ss_pred ccCCCCccccccChhhHHHHHHHHHHHHhCHHHHHHhCCCCCceeEEeCCCCCcHHHHHHHHHHHcCCCeEEecccCcC-
Q 035603 186 FEHPATFDTLAMASKKKEAIKKDLIKFTEGKEYYAKIGKAWKRGYLLFGPPGTGKSTMIAAMANCLNYDVYDLELTSVE- 264 (431)
Q Consensus 186 ~~~p~~f~~l~g~~~~k~~i~~~l~~~~~~~~~~~~~g~~~~rg~LL~GPPGtGKTsla~aiA~~l~~~i~~l~~~~~~- 264 (431)
-.++.+|++|+|.+++|++|.+.+..|+.+|+.|.++|+++|+|+|||||||||||++|+|+|++++.+|+.++++++.
T Consensus 174 ~~p~~t~~digGl~~~k~~l~e~v~~pl~~pe~f~~~g~~~prGvLLyGPPGTGKTllAkAiA~e~~~~f~~v~~s~l~~ 253 (434)
T 4b4t_M 174 EKPTETYSDVGGLDKQIEELVEAIVLPMKRADKFKDMGIRAPKGALMYGPPGTGKTLLARACAAQTNATFLKLAAPQLVQ 253 (434)
T ss_dssp SSCSCCGGGSCSCHHHHHHHHHHTHHHHHCSHHHHHHCCCCCCEEEEESCTTSSHHHHHHHHHHHHTCEEEEEEGGGGCS
T ss_pred CCCCCChHhcCcHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCeeEEECcCCCCHHHHHHHHHHHhCCCEEEEehhhhhh
Confidence 3455899999999999999999999999999999999999999999999999999999999999999999999998863
Q ss_pred -----ChHHHHHHHHHhhhc------------------------ccchhhHHHHHHHHhcCcccCCCCceEEEEecCCCC
Q 035603 265 -----NNNELRSLLVDISSK------------------------KKKSNVTLSGLLNCIGGLWSTCGGERIIVFTTNHVD 315 (431)
Q Consensus 265 -----~~~~l~~l~~~~~~~------------------------~~~~~~~~s~lL~~ldg~~~~~~~~~ivI~TTN~~~ 315 (431)
+...++.+|..+... ......++++||+.|||+.+. ++++||+|||+|+
T Consensus 254 ~~vGese~~ir~lF~~A~~~aP~IifiDEiDal~~~R~~~~~~~~~~~~~~~~~lL~~ldg~~~~--~~ViVIaaTNrp~ 331 (434)
T 4b4t_M 254 MYIGEGAKLVRDAFALAKEKAPTIIFIDELDAIGTKRFDSEKSGDREVQRTMLELLNQLDGFSSD--DRVKVLAATNRVD 331 (434)
T ss_dssp SCSSHHHHHHHHHHHHHHHHCSEEEEEECTHHHHCCCSSGGGGTTHHHHHHHHHHHHHHTTSCSS--CSSEEEEECSSCC
T ss_pred cccchHHHHHHHHHHHHHhcCCeEEeecchhhhhhccCCCCCCCchHHHHHHHHHHHHhhccCCC--CCEEEEEeCCCch
Confidence 345688888766544 012245789999999999765 4599999999999
Q ss_pred CCChhhhccCceeEEEEcCCCCHHHHHHHHHHhhchhcchhHHHHHhHhcc-CCCCHHHHHHHhcc
Q 035603 316 KLDPALIRRGRMDKHIEMPYCCFEAFKVLAKNYLEIESHELFHEIGSLLGE-TDITPADVAENLMP 380 (431)
Q Consensus 316 ~Ld~AllRpGRfd~~I~~~~p~~~~r~~i~~~~l~~~~~~~~~~i~~l~~~-~~~s~adI~~~l~~ 380 (431)
.|||||+||||||++|+||+|+.++|.+|++.|+.........++..++.. .|||+|||..+|..
T Consensus 332 ~LD~AllRpGRfD~~I~i~lPd~~~R~~Il~~~~~~~~~~~dvdl~~lA~~t~G~sGADi~~l~~e 397 (434)
T 4b4t_M 332 VLDPALLRSGRLDRKIEFPLPSEDSRAQILQIHSRKMTTDDDINWQELARSTDEFNGAQLKAVTVE 397 (434)
T ss_dssp CCCTTTCSTTSEEEEEECCCCCHHHHHHHHHHHHHHSCBCSCCCHHHHHHHCSSCCHHHHHHHHHH
T ss_pred hcCHhHhcCCceeEEEEeCCcCHHHHHHHHHHHhcCCCCCCcCCHHHHHHhCCCCCHHHHHHHHHH
Confidence 999999999999999999999999999999999875433222235566663 49999999988763
No 5
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.6e-38 Score=324.69 Aligned_cols=191 Identities=24% Similarity=0.343 Sum_probs=164.7
Q ss_pred CCCCccccccChhhHHHHHHHHHHHHhCHHHHHHhCCCCCceeEEeCCCCCcHHHHHHHHHHHcCCCeEEecccCcC---
Q 035603 188 HPATFDTLAMASKKKEAIKKDLIKFTEGKEYYAKIGKAWKRGYLLFGPPGTGKSTMIAAMANCLNYDVYDLELTSVE--- 264 (431)
Q Consensus 188 ~p~~f~~l~g~~~~k~~i~~~l~~~~~~~~~~~~~g~~~~rg~LL~GPPGtGKTsla~aiA~~l~~~i~~l~~~~~~--- 264 (431)
+..+|++|+|.+++|+.|.+.+..|+.++++|.++|+++|||+|||||||||||++|+|+|++++.+|+.++++++.
T Consensus 167 p~v~~~digGl~~~k~~l~e~v~~pl~~p~~~~~~g~~~prGiLL~GPPGtGKT~lakAiA~~~~~~~~~v~~~~l~~~~ 246 (428)
T 4b4t_K 167 PDVTYADVGGLDMQKQEIREAVELPLVQADLYEQIGIDPPRGVLLYGPPGTGKTMLVKAVANSTKAAFIRVNGSEFVHKY 246 (428)
T ss_dssp CSCCGGGSCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCCEEEEESCTTTTHHHHHHHHHHHHTCEEEEEEGGGTCCSS
T ss_pred CCCCHHHhccHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCceEEEECCCCCCHHHHHHHHHHHhCCCeEEEecchhhccc
Confidence 34899999999999999999999999999999999999999999999999999999999999999999999998763
Q ss_pred ---ChHHHHHHHHHhhhc------------------------ccchhhHHHHHHHHhcCcccCCCCceEEEEecCCCCCC
Q 035603 265 ---NNNELRSLLVDISSK------------------------KKKSNVTLSGLLNCIGGLWSTCGGERIIVFTTNHVDKL 317 (431)
Q Consensus 265 ---~~~~l~~l~~~~~~~------------------------~~~~~~~~s~lL~~ldg~~~~~~~~~ivI~TTN~~~~L 317 (431)
+...++.+|..+... +.....++++||+.|||+.+.++ ++||+|||+|+.|
T Consensus 247 ~Ge~e~~ir~lF~~A~~~aP~IifiDEiD~i~~~R~~~~~~~~~~~~r~l~~lL~~ldg~~~~~~--v~vI~aTN~~~~L 324 (428)
T 4b4t_K 247 LGEGPRMVRDVFRLARENAPSIIFIDEVDSIATKRFDAQTGSDREVQRILIELLTQMDGFDQSTN--VKVIMATNRADTL 324 (428)
T ss_dssp CSHHHHHHHHHHHHHHHTCSEEEEEECTHHHHCSCSSSCSCCCCHHHHHHHHHHHHHHHSCSSCS--EEEEEEESCSSSC
T ss_pred cchhHHHHHHHHHHHHHcCCCeeechhhhhhhccccCCCCCCChHHHHHHHHHHHHhhCCCCCCC--EEEEEecCChhhc
Confidence 346688999877554 11235689999999999976544 9999999999999
Q ss_pred ChhhhccCceeEEEEcC-CCCHHHHHHHHHHhhchhcchhHHHHHhHhcc-CCCCHHHHHHHhcc
Q 035603 318 DPALIRRGRMDKHIEMP-YCCFEAFKVLAKNYLEIESHELFHEIGSLLGE-TDITPADVAENLMP 380 (431)
Q Consensus 318 d~AllRpGRfd~~I~~~-~p~~~~r~~i~~~~l~~~~~~~~~~i~~l~~~-~~~s~adI~~~l~~ 380 (431)
||||+||||||++|+|| +|+.++|+.|++.++.........++..++.. .|||+|||..+|..
T Consensus 325 D~AllRpGRfd~~I~~p~lPd~~~R~~Il~~~~~~~~l~~~~dl~~lA~~t~G~sgadi~~l~~e 389 (428)
T 4b4t_K 325 DPALLRPGRLDRKIEFPSLRDRRERRLIFGTIASKMSLAPEADLDSLIIRNDSLSGAVIAAIMQE 389 (428)
T ss_dssp CHHHHSSSSEEEEEECCSSCCHHHHHHHHHHHHHSSCBCTTCCHHHHHHHTTTCCHHHHHHHHHH
T ss_pred ChhhhcCCcceEEEEcCCCCCHHHHHHHHHHHhcCCCCCcccCHHHHHHHCCCCCHHHHHHHHHH
Confidence 99999999999999997 89999999999999865433222345666663 49999999988763
No 6
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2.5e-38 Score=323.25 Aligned_cols=214 Identities=21% Similarity=0.259 Sum_probs=174.8
Q ss_pred CCCCccccccChhhHHHHHHHHHHHHhCHHHHHHhCCCCCceeEEeCCCCCcHHHHHHHHHHHcCCCeEEecccCcC---
Q 035603 188 HPATFDTLAMASKKKEAIKKDLIKFTEGKEYYAKIGKAWKRGYLLFGPPGTGKSTMIAAMANCLNYDVYDLELTSVE--- 264 (431)
Q Consensus 188 ~p~~f~~l~g~~~~k~~i~~~l~~~~~~~~~~~~~g~~~~rg~LL~GPPGtGKTsla~aiA~~l~~~i~~l~~~~~~--- 264 (431)
+..+|++|+|.+++|++|.+.+..++.+++.|.++|+++|+|+|||||||||||++|+|+|++++.+|+.++++++.
T Consensus 204 P~vt~~DIgGl~~~k~~L~e~V~~pl~~pe~f~~~Gi~pprGILLyGPPGTGKTlLAkAiA~e~~~~fi~vs~s~L~sk~ 283 (467)
T 4b4t_H 204 PDVTYSDVGGCKDQIEKLREVVELPLLSPERFATLGIDPPKGILLYGPPGTGKTLCARAVANRTDATFIRVIGSELVQKY 283 (467)
T ss_dssp CSCCCSSCTTCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCSEEEECSCTTSSHHHHHHHHHHHHTCEEEEEEGGGGCCCS
T ss_pred CCCCHHHhccHHHHHHHHHHHHHHHhcCHHHHHHCCCCCCCceEeeCCCCCcHHHHHHHHHhccCCCeEEEEhHHhhccc
Confidence 34899999999999999999999999999999999999999999999999999999999999999999999998763
Q ss_pred ---ChHHHHHHHHHhhhc------------------------ccchhhHHHHHHHHhcCcccCCCCceEEEEecCCCCCC
Q 035603 265 ---NNNELRSLLVDISSK------------------------KKKSNVTLSGLLNCIGGLWSTCGGERIIVFTTNHVDKL 317 (431)
Q Consensus 265 ---~~~~l~~l~~~~~~~------------------------~~~~~~~~s~lL~~ldg~~~~~~~~~ivI~TTN~~~~L 317 (431)
+...++.+|..+... ......+++++|+.|||+... ++++||+|||+|+.|
T Consensus 284 vGesek~ir~lF~~Ar~~aP~IIfiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~~~--~~ViVIaATNrpd~L 361 (467)
T 4b4t_H 284 VGEGARMVRELFEMARTKKACIIFFDEIDAVGGARFDDGAGGDNEVQRTMLELITQLDGFDPR--GNIKVMFATNRPNTL 361 (467)
T ss_dssp SSHHHHHHHHHHHHHHHTCSEEEEEECCTTTSBCCSSSSCGGGGHHHHHHHHHHHHHHSSCCT--TTEEEEEECSCTTSB
T ss_pred CCHHHHHHHHHHHHHHhcCCceEeecccccccccccCcCCCccHHHHHHHHHHHHHhhccCCC--CcEEEEeCCCCcccC
Confidence 346688898877654 112245789999999999654 459999999999999
Q ss_pred ChhhhccCceeEEEEcCCCCHHHHHHHHHHhhchhcchhHHHHHhHhcc-CCCCHHHHHHHhcccC----CCCCHHHHHH
Q 035603 318 DPALIRRGRMDKHIEMPYCCFEAFKVLAKNYLEIESHELFHEIGSLLGE-TDITPADVAENLMPKS----DEDDAGTCLK 392 (431)
Q Consensus 318 d~AllRpGRfd~~I~~~~p~~~~r~~i~~~~l~~~~~~~~~~i~~l~~~-~~~s~adI~~~l~~~~----~~~~~~~~l~ 392 (431)
||||+||||||++|+|++|+.++|++|++.++.........++..++.. .|||+|||..+|..+. ..+......+
T Consensus 362 DpALlRpGRFD~~I~i~lPd~~~R~~Ilk~~l~~~~l~~dvdl~~LA~~T~GfSGADI~~l~~eAa~~Air~~~~~it~~ 441 (467)
T 4b4t_H 362 DPALLRPGRIDRKVEFSLPDLEGRANIFRIHSKSMSVERGIRWELISRLCPNSTGAELRSVCTEAGMFAIRARRKVATEK 441 (467)
T ss_dssp CHHHHSTTTCCEEECCCCCCHHHHHHHHHHHHTTSCBCSSCCHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHTCSSBCHH
T ss_pred ChhhhccccccEEEEeCCcCHHHHHHHHHHHhcCCCCCCCCCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHcCCCccCHH
Confidence 9999999999999999999999999999999875443322235555553 4999999998876421 1111223456
Q ss_pred HHHHHHHHHHH
Q 035603 393 NLIEALKAAKE 403 (431)
Q Consensus 393 ~l~~~l~~~~~ 403 (431)
+|..|+++...
T Consensus 442 Df~~Al~kV~~ 452 (467)
T 4b4t_H 442 DFLKAVDKVIS 452 (467)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHhc
Confidence 77777766543
No 7
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=99.97 E-value=3e-33 Score=304.56 Aligned_cols=190 Identities=21% Similarity=0.307 Sum_probs=147.7
Q ss_pred CCCCccccccChhhHHHHHHHHHHHHhCHHHHHHhCCCCCceeEEeCCCCCcHHHHHHHHHHHcCCCeEEecccCc----
Q 035603 188 HPATFDTLAMASKKKEAIKKDLIKFTEGKEYYAKIGKAWKRGYLLFGPPGTGKSTMIAAMANCLNYDVYDLELTSV---- 263 (431)
Q Consensus 188 ~p~~f~~l~g~~~~k~~i~~~l~~~~~~~~~~~~~g~~~~rg~LL~GPPGtGKTsla~aiA~~l~~~i~~l~~~~~---- 263 (431)
+..+|++|+|.+++|+.|.+.+..++.+++.|.+.|+.+++|+|||||||||||++|+|+|++++.+++.++.+++
T Consensus 472 p~v~w~diggl~~~k~~l~e~v~~p~~~p~~f~~~g~~~~~gvLl~GPPGtGKT~lAkaiA~e~~~~f~~v~~~~l~s~~ 551 (806)
T 3cf2_A 472 PQVTWEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQANFISIKGPELLTMW 551 (806)
T ss_dssp CCCCSTTCCSCHHHHHHHTTTTTTTTTCSGGGSSSCCCCCSCCEEESSTTSSHHHHHHHHHHTTTCEEEECCHHHHHTTT
T ss_pred CCCCHHHhCCHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCceEEEecCCCCCchHHHHHHHHHhCCceEEeccchhhccc
Confidence 4488999999999999999999999999999999999999999999999999999999999999999999988765
Q ss_pred --CChHHHHHHHHHhhhc------------------------ccchhhHHHHHHHHhcCcccCCCCceEEEEecCCCCCC
Q 035603 264 --ENNNELRSLLVDISSK------------------------KKKSNVTLSGLLNCIGGLWSTCGGERIIVFTTNHVDKL 317 (431)
Q Consensus 264 --~~~~~l~~l~~~~~~~------------------------~~~~~~~~s~lL~~ldg~~~~~~~~~ivI~TTN~~~~L 317 (431)
+++..++++|..+... +....+.+++||++|||+.+. ++++||+|||+|+.|
T Consensus 552 vGese~~vr~lF~~Ar~~~P~IifiDEiDsl~~~R~~~~~~~~~~~~rv~~~lL~~mdg~~~~--~~V~vi~aTN~p~~l 629 (806)
T 3cf2_A 552 FGESEANVREIFDKARQAAPCVLFFDELDSIAKARGGNIGDGGGAADRVINQILTEMDGMSTK--KNVFIIGATNRPDII 629 (806)
T ss_dssp CSSCHHHHHHHHHHHHTTCSEEEECSCGGGCC--------------CHHHHHHHHHHHSSCSS--SSEEEECC-CCSSSS
T ss_pred cchHHHHHHHHHHHHHHcCCceeechhhhHHhhccCCCCCCCchHHHHHHHHHHHHHhCCCCC--CCEEEEEeCCCchhC
Confidence 4667899999888653 112356899999999999664 459999999999999
Q ss_pred ChhhhccCceeEEEEcCCCCHHHHHHHHHHhhchhcchhHHHHHhHhccC-CCCHHHHHHHhc
Q 035603 318 DPALIRRGRMDKHIEMPYCCFEAFKVLAKNYLEIESHELFHEIGSLLGET-DITPADVAENLM 379 (431)
Q Consensus 318 d~AllRpGRfd~~I~~~~p~~~~r~~i~~~~l~~~~~~~~~~i~~l~~~~-~~s~adI~~~l~ 379 (431)
|||++||||||.+|++|+|+.++|++|++.++.........++..+++.+ |||+|||.++|.
T Consensus 630 D~AllRpgRfd~~i~v~lPd~~~R~~il~~~l~~~~~~~~~dl~~la~~t~g~SGadi~~l~~ 692 (806)
T 3cf2_A 630 DPAILRPGRLDQLIYIPLPDEKSRVAILKANLRKSPVAKDVDLEFLAKMTNGFSGADLTEICQ 692 (806)
T ss_dssp CHHHHSTTTSCCEEEC-----CHHHHTTTTTSSCC--CCC----------------CHHHHHH
T ss_pred CHhHcCCCcceEEEEECCcCHHHHHHHHHHHhcCCCCCCCCCHHHHHHhCCCCCHHHHHHHHH
Confidence 99999999999999999999999999999998755433334566777644 999999998876
No 8
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=99.97 E-value=2.5e-31 Score=289.48 Aligned_cols=189 Identities=23% Similarity=0.273 Sum_probs=164.9
Q ss_pred CCCccccccChhhHHHHHHHHHHHHhCHHHHHHhCCCCCceeEEeCCCCCcHHHHHHHHHHHcCCCeEEecccCc-----
Q 035603 189 PATFDTLAMASKKKEAIKKDLIKFTEGKEYYAKIGKAWKRGYLLFGPPGTGKSTMIAAMANCLNYDVYDLELTSV----- 263 (431)
Q Consensus 189 p~~f~~l~g~~~~k~~i~~~l~~~~~~~~~~~~~g~~~~rg~LL~GPPGtGKTsla~aiA~~l~~~i~~l~~~~~----- 263 (431)
..+|++|+|.+++|++|.+.+..++.+|+.|..+|+.+|+|+|||||||||||+||+++|++++.+++.++++++
T Consensus 200 ~v~~~dIgGl~~~~~~l~e~v~~pl~~p~~f~~~g~~~p~GILL~GPPGTGKT~LAraiA~elg~~~~~v~~~~l~sk~~ 279 (806)
T 3cf2_A 200 EVGYDDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKLA 279 (806)
T ss_dssp SCCGGGCCSCCTTHHHHHHHHHHHHHCCGGGTSCCCCCCCEEEEECCTTSCHHHHHHHHHTTTTCEEEEEEHHHHHSSCT
T ss_pred CCChhhhcCHHHHHHHHHHHHHHHccCHHHHhhcCCCCCCeEEEECCCCCCHHHHHHHHHHHhCCeEEEEEhHHhhcccc
Confidence 378999999999999999999999999999999999999999999999999999999999999999999998765
Q ss_pred -CChHHHHHHHHHhhhc---------------------ccchhhHHHHHHHHhcCcccCCCCceEEEEecCCCCCCChhh
Q 035603 264 -ENNNELRSLLVDISSK---------------------KKKSNVTLSGLLNCIGGLWSTCGGERIIVFTTNHVDKLDPAL 321 (431)
Q Consensus 264 -~~~~~l~~l~~~~~~~---------------------~~~~~~~~s~lL~~ldg~~~~~~~~~ivI~TTN~~~~Ld~Al 321 (431)
++...++.+|..+... .......+++||..|||+.+.. +++||+|||+++.|||||
T Consensus 280 gese~~lr~lF~~A~~~~PsIIfIDEiDal~~~r~~~~~~~~~riv~~LL~~mdg~~~~~--~V~VIaaTN~~d~LD~AL 357 (806)
T 3cf2_A 280 GESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQRA--HVIVMAATNRPNSIDPAL 357 (806)
T ss_dssp THHHHHHHHHHHHHTTSCSEEEEEESGGGTCCTTTTCCCTTHHHHHHHHHTHHHHCCGGG--CEEEEEECSSTTTSCTTT
T ss_pred hHHHHHHHHHHHHHHHcCCeEEEEehhcccccccCCCCChHHHHHHHHHHHHHhcccccC--CEEEEEecCChhhcCHHH
Confidence 2346788999887654 2334678999999999997654 499999999999999999
Q ss_pred hccCceeEEEEcCCCCHHHHHHHHHHhhchhcchhHHHHHhHhcc-CCCCHHHHHHHhc
Q 035603 322 IRRGRMDKHIEMPYCCFEAFKVLAKNYLEIESHELFHEIGSLLGE-TDITPADVAENLM 379 (431)
Q Consensus 322 lRpGRfd~~I~~~~p~~~~r~~i~~~~l~~~~~~~~~~i~~l~~~-~~~s~adI~~~l~ 379 (431)
+||||||++|+++.|+.++|++|++.++.........++..++.. .||+++||..++.
T Consensus 358 rR~GRFd~~I~i~~Pd~~~R~~IL~~~l~~~~~~~dvdl~~lA~~T~GfsgaDL~~Lv~ 416 (806)
T 3cf2_A 358 RRFGRFDREVDIGIPDATGRLEILQIHTKNMKLADDVDLEQVANETHGHVGADLAALCS 416 (806)
T ss_dssp TSTTSSCEEEECCCCCHHHHHHHHHHTCSSSEECTTCCHHHHHHHCCSCCHHHHHHHHH
T ss_pred hCCcccceEEecCCCCHHHHHHHHHHHhcCCCCCcccCHHHHHHhcCCCCHHHHHHHHH
Confidence 999999999999999999999999999875544333446667764 4999999997766
No 9
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=99.96 E-value=1.6e-28 Score=237.98 Aligned_cols=190 Identities=21% Similarity=0.278 Sum_probs=150.6
Q ss_pred CCCCccccccChhhHHHHHHHHHHHHhCHHHHHHhCCCCCceeEEeCCCCCcHHHHHHHHHHHcCCCeEEecccCcCC--
Q 035603 188 HPATFDTLAMASKKKEAIKKDLIKFTEGKEYYAKIGKAWKRGYLLFGPPGTGKSTMIAAMANCLNYDVYDLELTSVEN-- 265 (431)
Q Consensus 188 ~p~~f~~l~g~~~~k~~i~~~l~~~~~~~~~~~~~g~~~~rg~LL~GPPGtGKTsla~aiA~~l~~~i~~l~~~~~~~-- 265 (431)
+..+|++|+|.+++|+.|.+.+..++.++..|..+|...++|+||+||||||||+|+++||++++..++.++..++..
T Consensus 5 ~~~~~~di~g~~~~~~~l~~~i~~~~~~~~~l~~~~l~~~~GvlL~Gp~GtGKTtLakala~~~~~~~i~i~g~~l~~~~ 84 (274)
T 2x8a_A 5 PNVTWADIGALEDIREELTMAILAPVRNPDQFKALGLVTPAGVLLAGPPGCGKTLLAKAVANESGLNFISVKGPELLNMY 84 (274)
T ss_dssp -------CCHHHHHHHHHHHHHTHHHHSHHHHHHTTCCCCSEEEEESSTTSCHHHHHHHHHHHTTCEEEEEETTTTCSST
T ss_pred CCCCHHHhCCHHHHHHHHHHHHHHHhhCHHHHHHcCCCCCCeEEEECCCCCcHHHHHHHHHHHcCCCEEEEEcHHHHhhh
Confidence 347899999999999999999999999999999999999999999999999999999999999999999998877632
Q ss_pred ----hHHHHHHHHHhhhc----------c-----------cchhhHHHHHHHHhcCcccCCCCceEEEEecCCCCCCChh
Q 035603 266 ----NNELRSLLVDISSK----------K-----------KKSNVTLSGLLNCIGGLWSTCGGERIIVFTTNHVDKLDPA 320 (431)
Q Consensus 266 ----~~~l~~l~~~~~~~----------~-----------~~~~~~~s~lL~~ldg~~~~~~~~~ivI~TTN~~~~Ld~A 320 (431)
...+..+|..+... + ......++.++..|||.... ..++++++||+|+.||||
T Consensus 85 ~~~~~~~i~~vf~~a~~~~p~i~~~Deid~~~~~r~~~~~~~~~~~~~~~l~~Lsgg~~~--~~~i~ia~tn~p~~LD~a 162 (274)
T 2x8a_A 85 VGESERAVRQVFQRAKNSAPCVIFFDEVDALCPRRSDRETGASVRVVNQLLTEMDGLEAR--QQVFIMAATNRPDIIDPA 162 (274)
T ss_dssp THHHHHHHHHHHHHHHHTCSEEEEEETCTTTCC---------CTTHHHHHHHHHHTCCST--TCEEEEEEESCGGGSCHH
T ss_pred hhHHHHHHHHHHHHHHhcCCCeEeeehhhhhhcccCCCcchHHHHHHHHHHHhhhccccc--CCEEEEeecCChhhCCHh
Confidence 23466777765322 0 01235678999999998543 448999999999999999
Q ss_pred hhccCceeEEEEcCCCCHHHHHHHHHHhhchhc---chhHHHHHhHhc---cCCCCHHHHHHHhc
Q 035603 321 LIRRGRMDKHIEMPYCCFEAFKVLAKNYLEIES---HELFHEIGSLLG---ETDITPADVAENLM 379 (431)
Q Consensus 321 llRpGRfd~~I~~~~p~~~~r~~i~~~~l~~~~---~~~~~~i~~l~~---~~~~s~adI~~~l~ 379 (431)
++||||||.+|++++|+.++|.+|++.++.... .....++..++. ..|||+|||..+|.
T Consensus 163 l~r~gRfd~~i~~~~P~~~~r~~il~~~~~~~~~~~~~~~~~~~~la~~~~~~g~sgadl~~l~~ 227 (274)
T 2x8a_A 163 ILRPGRLDKTLFVGLPPPADRLAILKTITKNGTKPPLDADVNLEAIAGDLRCDCYTGADLSALVR 227 (274)
T ss_dssp HHSTTSSCEEEECCSCCHHHHHHHHHHHTTTTBTTBBCTTCCHHHHHTCSGGGSCCHHHHHHHHH
T ss_pred hcCcccCCeEEEeCCcCHHHHHHHHHHHHhcccCCCCccccCHHHHHHhhccCCcCHHHHHHHHH
Confidence 999999999999999999999999999885321 112223555665 33999999998776
No 10
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=99.95 E-value=1.3e-27 Score=234.37 Aligned_cols=190 Identities=21% Similarity=0.308 Sum_probs=158.0
Q ss_pred CCCCccccccChhhHHHHHHHHHHHHhCHHHHHHhCCCCCceeEEeCCCCCcHHHHHHHHHHHcCCCeEEecccCc----
Q 035603 188 HPATFDTLAMASKKKEAIKKDLIKFTEGKEYYAKIGKAWKRGYLLFGPPGTGKSTMIAAMANCLNYDVYDLELTSV---- 263 (431)
Q Consensus 188 ~p~~f~~l~g~~~~k~~i~~~l~~~~~~~~~~~~~g~~~~rg~LL~GPPGtGKTsla~aiA~~l~~~i~~l~~~~~---- 263 (431)
++.+|++|+|.+++++.|.+.+..++..++.|...|++.++++|||||||||||++|+++|++++.+++.++++++
T Consensus 10 ~~~~~~di~G~~~~~~~l~~~v~~~~~~~~~~~~~~~~~~~~vLL~Gp~GtGKT~la~ala~~~~~~~i~v~~~~l~~~~ 89 (301)
T 3cf0_A 10 PQVTWEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQANFISIKGPELLTMW 89 (301)
T ss_dssp CCCCGGGSCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCSEEEEECSSSSSHHHHHHHHHHHTTCEEEEECHHHHHHHH
T ss_pred CCCCHHHhCCHHHHHHHHHHHHHHHhhCHHHHHHcCCCCCceEEEECCCCcCHHHHHHHHHHHhCCCEEEEEhHHHHhhh
Confidence 5588999999999999999999999999999999999999999999999999999999999999999999987764
Q ss_pred --CChHHHHHHHHHhhhc-------c-----------------cchhhHHHHHHHHhcCcccCCCCceEEEEecCCCCCC
Q 035603 264 --ENNNELRSLLVDISSK-------K-----------------KKSNVTLSGLLNCIGGLWSTCGGERIIVFTTNHVDKL 317 (431)
Q Consensus 264 --~~~~~l~~l~~~~~~~-------~-----------------~~~~~~~s~lL~~ldg~~~~~~~~~ivI~TTN~~~~L 317 (431)
.....++.+|..+... + ......++.||+.+|++.. ..+++||+|||+++.|
T Consensus 90 ~g~~~~~~~~~f~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~~~~~~~~lL~~l~~~~~--~~~v~vi~atn~~~~l 167 (301)
T 3cf0_A 90 FGESEANVREIFDKARQAAPCVLFFDELDSIAKARGGNIGDGGGAADRVINQILTEMDGMST--KKNVFIIGATNRPDII 167 (301)
T ss_dssp HTTCTTHHHHHHHHHHHTCSEEEEECSTTHHHHHHTTTTCCSSCSCCHHHHHHHHHHHSSCT--TSSEEEEEEESCGGGS
T ss_pred cCchHHHHHHHHHHHHhcCCeEEEEEChHHHhhccCCCcCCcchHHHHHHHHHHHHhhcccC--CCCEEEEEecCCcccc
Confidence 2345577777766542 1 1224467899999999854 3459999999999999
Q ss_pred ChhhhccCceeEEEEcCCCCHHHHHHHHHHhhchhcchhHHHHHhHhc-cCCCCHHHHHHHhc
Q 035603 318 DPALIRRGRMDKHIEMPYCCFEAFKVLAKNYLEIESHELFHEIGSLLG-ETDITPADVAENLM 379 (431)
Q Consensus 318 d~AllRpGRfd~~I~~~~p~~~~r~~i~~~~l~~~~~~~~~~i~~l~~-~~~~s~adI~~~l~ 379 (431)
|++++|||||+..|+++.|+.++|..|++.++.........++..++. ..||+++||.+++.
T Consensus 168 d~al~r~gRf~~~i~i~~p~~~~r~~il~~~l~~~~~~~~~~~~~la~~~~g~sg~dl~~l~~ 230 (301)
T 3cf0_A 168 DPAILRPGRLDQLIYIPLPDEKSRVAILKANLRKSPVAKDVDLEFLAKMTNGFSGADLTEICQ 230 (301)
T ss_dssp CGGGGSTTSSCEEEECCCCCHHHHHHHHHHHHTTSCBCSSCCHHHHHHTCSSCCHHHHHHHHH
T ss_pred ChHHhcCCccceEEecCCcCHHHHHHHHHHHHccCCCCccchHHHHHHHcCCCCHHHHHHHHH
Confidence 999999999999999999999999999999986543221122344444 44999999998776
No 11
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=99.94 E-value=4e-26 Score=218.01 Aligned_cols=193 Identities=21% Similarity=0.306 Sum_probs=149.7
Q ss_pred eccCCCCccccccChhhHHHHHHHHHHHHhCHHHHHHhCCCCCceeEEeCCCCCcHHHHHHHHHHHcCCCeEEecccCcC
Q 035603 185 YFEHPATFDTLAMASKKKEAIKKDLIKFTEGKEYYAKIGKAWKRGYLLFGPPGTGKSTMIAAMANCLNYDVYDLELTSVE 264 (431)
Q Consensus 185 ~~~~p~~f~~l~g~~~~k~~i~~~l~~~~~~~~~~~~~g~~~~rg~LL~GPPGtGKTsla~aiA~~l~~~i~~l~~~~~~ 264 (431)
+..++.+|++|+|.+++++.|.+.+ .++..+..|...|...++|+||+||||||||++++++|++++.+++.++++.+.
T Consensus 4 ~~~~~~~~~~i~G~~~~~~~l~~~~-~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~~~~~~~~i~~~~~~ 82 (257)
T 1lv7_A 4 EDQIKTTFADVAGCDEAKEEVAELV-EYLREPSRFQKLGGKIPKGVLMVGPPGTGKTLLAKAIAGEAKVPFFTISGSDFV 82 (257)
T ss_dssp ECSSCCCGGGSCSCHHHHHHTHHHH-HHHHCGGGC-----CCCCEEEEECCTTSCHHHHHHHHHHHHTCCEEEECSCSST
T ss_pred ccCCCCCHHHhcCcHHHHHHHHHHH-HHHhCHHHHHHcCCCCCCeEEEECcCCCCHHHHHHHHHHHcCCCEEEEeHHHHH
Confidence 3456789999999999999998755 557788889999999999999999999999999999999999999999987752
Q ss_pred ------ChHHHHHHHHHhhhc---------------c---------cchhhHHHHHHHHhcCcccCCCCceEEEEecCCC
Q 035603 265 ------NNNELRSLLVDISSK---------------K---------KKSNVTLSGLLNCIGGLWSTCGGERIIVFTTNHV 314 (431)
Q Consensus 265 ------~~~~l~~l~~~~~~~---------------~---------~~~~~~~s~lL~~ldg~~~~~~~~~ivI~TTN~~ 314 (431)
....++.+|..+... . ......++.+|..+|++... .+++||+|||++
T Consensus 83 ~~~~~~~~~~~~~~~~~a~~~~~~il~iDeid~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~--~~~~vI~~tn~~ 160 (257)
T 1lv7_A 83 EMFVGVGASRVRDMFEQAKKAAPCIIFIDEIDAVGRQRGAGLGGGHDEREQTLNQMLVEMDGFEGN--EGIIVIAATNRP 160 (257)
T ss_dssp TSCCCCCHHHHHHHHHHHHTTCSEEEEETTHHHHTCCCSTTSCCTTCHHHHHHHHHHHHHHTCCSS--SCEEEEEEESCT
T ss_pred HHhhhhhHHHHHHHHHHHHHcCCeeehhhhhhhhccCCCCCcCCCchHHHHHHHHHHHHhhCcccC--CCEEEEEeeCCc
Confidence 345677777765432 0 01125788999999998543 459999999999
Q ss_pred CCCChhhhccCceeEEEEcCCCCHHHHHHHHHHhhchhcchhHHHHHhHhcc-CCCCHHHHHHHhcc
Q 035603 315 DKLDPALIRRGRMDKHIEMPYCCFEAFKVLAKNYLEIESHELFHEIGSLLGE-TDITPADVAENLMP 380 (431)
Q Consensus 315 ~~Ld~AllRpGRfd~~I~~~~p~~~~r~~i~~~~l~~~~~~~~~~i~~l~~~-~~~s~adI~~~l~~ 380 (431)
+.||++++|||||+..|+++.|+.++|.+|++.++..........+..++.. .|++++||..++..
T Consensus 161 ~~l~~~l~r~~rf~~~i~i~~P~~~~r~~il~~~~~~~~l~~~~~~~~la~~~~G~~~~dl~~l~~~ 227 (257)
T 1lv7_A 161 DVLDPALLRPGRFDRQVVVGLPDVRGREQILKVHMRRVPLAPDIDAAIIARGTPGFSGADLANLVNE 227 (257)
T ss_dssp TTSCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHHTTSCBCTTCCHHHHHHTCTTCCHHHHHHHHHH
T ss_pred hhCCHHHcCCCcCCeEEEeCCCCHHHHHHHHHHHHhcCCCCccccHHHHHHHcCCCCHHHHHHHHHH
Confidence 9999999999999999999999999999999998764322211223344443 48999999977653
No 12
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=99.94 E-value=5.2e-26 Score=219.99 Aligned_cols=217 Identities=21% Similarity=0.240 Sum_probs=167.6
Q ss_pred eccCCCCccccccChhhHHHHHHHHHHHHhCHHHHHHhCCCCCceeEEeCCCCCcHHHHHHHHHHHcCCCeEEecccCcC
Q 035603 185 YFEHPATFDTLAMASKKKEAIKKDLIKFTEGKEYYAKIGKAWKRGYLLFGPPGTGKSTMIAAMANCLNYDVYDLELTSVE 264 (431)
Q Consensus 185 ~~~~p~~f~~l~g~~~~k~~i~~~l~~~~~~~~~~~~~g~~~~rg~LL~GPPGtGKTsla~aiA~~l~~~i~~l~~~~~~ 264 (431)
...++.+|++|+|.+++++.|.+.+..++..++.|..+|...++++||+||||||||++|+++|++++.+++.+++..+.
T Consensus 9 ~~~~~~~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ll~G~~GtGKT~la~~la~~~~~~~~~v~~~~~~ 88 (285)
T 3h4m_A 9 DERPNVRYEDIGGLEKQMQEIREVVELPLKHPELFEKVGIEPPKGILLYGPPGTGKTLLAKAVATETNATFIRVVGSELV 88 (285)
T ss_dssp ESSCCCCGGGSCSCHHHHHHHHHHTHHHHHCHHHHHHHCCCCCSEEEEESSSSSSHHHHHHHHHHHTTCEEEEEEGGGGC
T ss_pred cCCCCCCHHHhcCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCeEEEECCCCCcHHHHHHHHHHHhCCCEEEEehHHHH
Confidence 44556889999999999999999999999999999999999999999999999999999999999999999999887762
Q ss_pred C------hHHHHHHHHHhhhc-------c-----------------cchhhHHHHHHHHhcCcccCCCCceEEEEecCCC
Q 035603 265 N------NNELRSLLVDISSK-------K-----------------KKSNVTLSGLLNCIGGLWSTCGGERIIVFTTNHV 314 (431)
Q Consensus 265 ~------~~~l~~l~~~~~~~-------~-----------------~~~~~~~s~lL~~ldg~~~~~~~~~ivI~TTN~~ 314 (431)
. ...+..+|..+... + ......+..+++.+++.... .+++||+|||.+
T Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~--~~~~vI~ttn~~ 166 (285)
T 3h4m_A 89 KKFIGEGASLVKDIFKLAKEKAPSIIFIDEIDAIAAKRTDALTGGDREVQRTLMQLLAEMDGFDAR--GDVKIIGATNRP 166 (285)
T ss_dssp CCSTTHHHHHHHHHHHHHHHTCSEEEEEETTHHHHBCCSSSCCGGGGHHHHHHHHHHHHHHTTCSS--SSEEEEEECSCG
T ss_pred HhccchHHHHHHHHHHHHHHcCCeEEEEECHHHhcccCccccCCccHHHHHHHHHHHHHhhCCCCC--CCEEEEEeCCCc
Confidence 2 23455566554332 0 11235677888888887543 459999999999
Q ss_pred CCCChhhhccCceeEEEEcCCCCHHHHHHHHHHhhchhcchhHHHHHhHhc-cCCCCHHHHHHHhcccC----CCCCHHH
Q 035603 315 DKLDPALIRRGRMDKHIEMPYCCFEAFKVLAKNYLEIESHELFHEIGSLLG-ETDITPADVAENLMPKS----DEDDAGT 389 (431)
Q Consensus 315 ~~Ld~AllRpGRfd~~I~~~~p~~~~r~~i~~~~l~~~~~~~~~~i~~l~~-~~~~s~adI~~~l~~~~----~~~~~~~ 389 (431)
+.||++++|||||+..++++.|+.++|.+|++.++.........++..++. ..|+++++|..++..+. .......
T Consensus 167 ~~l~~~l~~~~Rf~~~i~~~~p~~~~r~~il~~~~~~~~~~~~~~~~~l~~~~~g~~~~~i~~l~~~a~~~a~~~~~~~I 246 (285)
T 3h4m_A 167 DILDPAILRPGRFDRIIEVPAPDEKGRLEILKIHTRKMNLAEDVNLEEIAKMTEGCVGAELKAICTEAGMNAIRELRDYV 246 (285)
T ss_dssp GGBCHHHHSTTSEEEEEECCCCCHHHHHHHHHHHHTTSCBCTTCCHHHHHHHCTTCCHHHHHHHHHHHHHHHHHTTCSSB
T ss_pred hhcCHHHcCCCcCCeEEEECCCCHHHHHHHHHHHHhcCCCCCcCCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhccCcC
Confidence 999999999999999999999999999999999886443322223455555 34999999998765411 1112234
Q ss_pred HHHHHHHHHHHHHH
Q 035603 390 CLKNLIEALKAAKE 403 (431)
Q Consensus 390 ~l~~l~~~l~~~~~ 403 (431)
..+++.++++....
T Consensus 247 ~~~d~~~al~~~~~ 260 (285)
T 3h4m_A 247 TMDDFRKAVEKIME 260 (285)
T ss_dssp CHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHh
Confidence 45666666666543
No 13
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=99.94 E-value=1.3e-25 Score=222.48 Aligned_cols=188 Identities=22% Similarity=0.235 Sum_probs=155.4
Q ss_pred CCCCccccccChhhHHHHHHHHHHHHhCHHHHHHhCCCCCceeEEeCCCCCcHHHHHHHHHHHc-CCCeEEecccCcC--
Q 035603 188 HPATFDTLAMASKKKEAIKKDLIKFTEGKEYYAKIGKAWKRGYLLFGPPGTGKSTMIAAMANCL-NYDVYDLELTSVE-- 264 (431)
Q Consensus 188 ~p~~f~~l~g~~~~k~~i~~~l~~~~~~~~~~~~~g~~~~rg~LL~GPPGtGKTsla~aiA~~l-~~~i~~l~~~~~~-- 264 (431)
++.+|++|+|.+++|+.|.+.+..++..++.|.. +..+++|+|||||||||||++|+++|+++ +.+++.++++++.
T Consensus 7 ~~~~~~di~G~~~~k~~l~~~v~~p~~~~~~~~~-~~~~~~~iLL~GppGtGKT~la~ala~~~~~~~~~~i~~~~l~~~ 85 (322)
T 1xwi_A 7 PNVKWSDVAGLEGAKEALKEAVILPIKFPHLFTG-KRTPWRGILLFGPPGTGKSYLAKAVATEANNSTFFSISSSDLVSK 85 (322)
T ss_dssp CCCCGGGSCSCHHHHHHHHHHHHHHHHCGGGSCT-TCCCCSEEEEESSSSSCHHHHHHHHHHHTTSCEEEEEECCSSCCS
T ss_pred CCCCHHHhcCHHHHHHHHHHHHHHHHhCHHHHhC-CCCCCceEEEECCCCccHHHHHHHHHHHcCCCcEEEEEhHHHHhh
Confidence 4588999999999999999999999999988874 35667999999999999999999999999 8899999887752
Q ss_pred ----ChHHHHHHHHHhhhc---------------------ccchhhHHHHHHHHhcCcccCCCCceEEEEecCCCCCCCh
Q 035603 265 ----NNNELRSLLVDISSK---------------------KKKSNVTLSGLLNCIGGLWSTCGGERIIVFTTNHVDKLDP 319 (431)
Q Consensus 265 ----~~~~l~~l~~~~~~~---------------------~~~~~~~~s~lL~~ldg~~~~~~~~~ivI~TTN~~~~Ld~ 319 (431)
....++.+|..+... .......+++||..+|++.. ...+++||+|||+++.||+
T Consensus 86 ~~g~~~~~~~~lf~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~ld~~~~-~~~~v~vI~atn~~~~ld~ 164 (322)
T 1xwi_A 86 WLGESEKLVKNLFQLARENKPSIIFIDEIDSLCGSRSENESEAARRIKTEFLVQMQGVGV-DNDGILVLGATNIPWVLDS 164 (322)
T ss_dssp SCCSCHHHHHHHHHHHHHTSSEEEEEETTTGGGCCSSSCCTTHHHHHHHHHHHHHHCSSS-CCTTEEEEEEESCTTTSCH
T ss_pred hhhHHHHHHHHHHHHHHhcCCcEEEeecHHHhccccccccchHHHHHHHHHHHHHhcccc-cCCCEEEEEecCCcccCCH
Confidence 345677777665432 11234578899999999853 2356999999999999999
Q ss_pred hhhccCceeEEEEcCCCCHHHHHHHHHHhhchhcch-hHHHHHhHhccC-CCCHHHHHHHhc
Q 035603 320 ALIRRGRMDKHIEMPYCCFEAFKVLAKNYLEIESHE-LFHEIGSLLGET-DITPADVAENLM 379 (431)
Q Consensus 320 AllRpGRfd~~I~~~~p~~~~r~~i~~~~l~~~~~~-~~~~i~~l~~~~-~~s~adI~~~l~ 379 (431)
+++| ||+..|++++|+.++|..|++.++...... ...++..++..+ |||++||..++.
T Consensus 165 al~r--Rf~~~i~i~~P~~~~r~~il~~~l~~~~~~l~~~~l~~la~~t~G~sgadl~~l~~ 224 (322)
T 1xwi_A 165 AIRR--RFEKRIYIPLPEPHARAAMFKLHLGTTQNSLTEADFRELGRKTDGYSGADISIIVR 224 (322)
T ss_dssp HHHH--TCCEEEECCCCCHHHHHHHHHHHHTTCCBCCCHHHHHHHHHTCTTCCHHHHHHHHH
T ss_pred HHHh--hcCeEEEeCCcCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHcCCCCHHHHHHHHH
Confidence 9999 999999999999999999999998654432 344567777744 999999997765
No 14
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=99.94 E-value=4.1e-26 Score=236.48 Aligned_cols=211 Identities=24% Similarity=0.325 Sum_probs=163.3
Q ss_pred CCCCccccccChhhHHHHHHHHHHHHhCHHHHHHhCCCCCceeEEeCCCCCcHHHHHHHHHHHcCCCeEEecccCcC---
Q 035603 188 HPATFDTLAMASKKKEAIKKDLIKFTEGKEYYAKIGKAWKRGYLLFGPPGTGKSTMIAAMANCLNYDVYDLELTSVE--- 264 (431)
Q Consensus 188 ~p~~f~~l~g~~~~k~~i~~~l~~~~~~~~~~~~~g~~~~rg~LL~GPPGtGKTsla~aiA~~l~~~i~~l~~~~~~--- 264 (431)
.+.+|++|+|.+++|+++.+.+ .++..+..|..+|...++|+||+||||||||++|+++|++++.+++.++++++.
T Consensus 11 ~~~~f~di~G~~~~~~~l~e~v-~~l~~~~~~~~~g~~~p~gvLL~GppGtGKT~Laraia~~~~~~f~~is~~~~~~~~ 89 (476)
T 2ce7_A 11 KRVTFKDVGGAEEAIEELKEVV-EFLKDPSKFNRIGARMPKGILLVGPPGTGKTLLARAVAGEANVPFFHISGSDFVELF 89 (476)
T ss_dssp CCCCGGGCCSCHHHHHHHHHHH-HHHHCTHHHHTTTCCCCSEEEEECCTTSSHHHHHHHHHHHHTCCEEEEEGGGTTTCC
T ss_pred CCCCHHHhCCcHHHHHHHHHHH-HHhhChHHHhhcCCCCCCeEEEECCCCCCHHHHHHHHHHHcCCCeeeCCHHHHHHHH
Confidence 4578999999999999998765 567888999999999999999999999999999999999999999999987752
Q ss_pred ---ChHHHHHHHHHhhhc-------c-----------------cchhhHHHHHHHHhcCcccCCCCceEEEEecCCCCCC
Q 035603 265 ---NNNELRSLLVDISSK-------K-----------------KKSNVTLSGLLNCIGGLWSTCGGERIIVFTTNHVDKL 317 (431)
Q Consensus 265 ---~~~~l~~l~~~~~~~-------~-----------------~~~~~~~s~lL~~ldg~~~~~~~~~ivI~TTN~~~~L 317 (431)
+...++.+|..+... + .....++++||..||++... .+++||+|||+++.|
T Consensus 90 ~g~~~~~~r~lf~~A~~~~p~ILfIDEid~l~~~r~~~~~g~~~~~~~~l~~LL~~ld~~~~~--~~viVIaaTn~~~~L 167 (476)
T 2ce7_A 90 VGVGAARVRDLFAQAKAHAPCIVFIDEIDAVGRHRGAGLGGGHDEREQTLNQLLVEMDGFDSK--EGIIVMAATNRPDIL 167 (476)
T ss_dssp TTHHHHHHHHHHHHHHHTCSEEEEEETGGGTCCC---------CHHHHHHHHHHHHHHHSCGG--GTEEEEEEESCGGGS
T ss_pred hcccHHHHHHHHHHHHhcCCCEEEEechhhhhhhcccccCcCcHHHHHHHHHHHHHHhccCCC--CCEEEEEecCChhhh
Confidence 234577777776543 0 11235789999999988553 459999999999999
Q ss_pred ChhhhccCceeEEEEcCCCCHHHHHHHHHHhhchhcchhHHHHHhHhcc-CCCCHHHHHHHhcccC----CCCCHHHHHH
Q 035603 318 DPALIRRGRMDKHIEMPYCCFEAFKVLAKNYLEIESHELFHEIGSLLGE-TDITPADVAENLMPKS----DEDDAGTCLK 392 (431)
Q Consensus 318 d~AllRpGRfd~~I~~~~p~~~~r~~i~~~~l~~~~~~~~~~i~~l~~~-~~~s~adI~~~l~~~~----~~~~~~~~l~ 392 (431)
||+++||||||..|.++.|+.++|+.|++.++.........++..++.. .|++++||.+++..+. .........+
T Consensus 168 d~allR~gRFd~~i~i~~Pd~~~R~~Il~~~~~~~~l~~~v~l~~la~~t~G~sgadL~~lv~~Aal~A~~~~~~~I~~~ 247 (476)
T 2ce7_A 168 DPALLRPGRFDKKIVVDPPDMLGRKKILEIHTRNKPLAEDVNLEIIAKRTPGFVGADLENLVNEAALLAAREGRDKITMK 247 (476)
T ss_dssp CGGGGSTTSSCEEEECCCCCHHHHHHHHHHHHTTSCBCTTCCHHHHHHTCTTCCHHHHHHHHHHHHHHHHHTTCSSBCHH
T ss_pred chhhcccCcceeEeecCCCCHHHHHHHHHHHHHhCCCcchhhHHHHHHhcCCCcHHHHHHHHHHHHHHHHHcCCCeecHH
Confidence 9999999999999999999999999999998865332211224455553 4999999998775411 1111223445
Q ss_pred HHHHHHHHH
Q 035603 393 NLIEALKAA 401 (431)
Q Consensus 393 ~l~~~l~~~ 401 (431)
++..++.+.
T Consensus 248 dl~~al~~v 256 (476)
T 2ce7_A 248 DFEEAIDRV 256 (476)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 555555544
No 15
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=99.94 E-value=5e-26 Score=216.90 Aligned_cols=189 Identities=22% Similarity=0.322 Sum_probs=145.9
Q ss_pred CCCccccccChhhHHHHHHHHHHHHhCHHHHHHhCCCCCceeEEeCCCCCcHHHHHHHHHHHcCCCeEEecccCcCC---
Q 035603 189 PATFDTLAMASKKKEAIKKDLIKFTEGKEYYAKIGKAWKRGYLLFGPPGTGKSTMIAAMANCLNYDVYDLELTSVEN--- 265 (431)
Q Consensus 189 p~~f~~l~g~~~~k~~i~~~l~~~~~~~~~~~~~g~~~~rg~LL~GPPGtGKTsla~aiA~~l~~~i~~l~~~~~~~--- 265 (431)
+.+|++|+|.+++|+.|.+.+ .++..++.|...|.+.++++|||||||||||++|+++|++++.+++.++++.+..
T Consensus 2 ~~~~~~i~G~~~~~~~l~~~~-~~~~~~~~~~~~g~~~~~~vll~G~~GtGKT~la~~la~~~~~~~~~~~~~~~~~~~~ 80 (262)
T 2qz4_A 2 GVSFKDVAGMHEAKLEVREFV-DYLKSPERFLQLGAKVPKGALLLGPPGCGKTLLAKAVATEAQVPFLAMAGAEFVEVIG 80 (262)
T ss_dssp CCCTTSSCSCHHHHHHHHHHH-HHHHCCC------CCCCCEEEEESCTTSSHHHHHHHHHHHHTCCEEEEETTTTSSSST
T ss_pred CCCHHHhCCHHHHHHHHHHHH-HHHHCHHHHHHcCCCCCceEEEECCCCCCHHHHHHHHHHHhCCCEEEechHHHHhhcc
Confidence 578999999999999998765 4578888999999999999999999999999999999999999999999887532
Q ss_pred ---hHHHHHHHHHhhhc-------c------------------cchhhHHHHHHHHhcCcccCCCCceEEEEecCCCCCC
Q 035603 266 ---NNELRSLLVDISSK-------K------------------KKSNVTLSGLLNCIGGLWSTCGGERIIVFTTNHVDKL 317 (431)
Q Consensus 266 ---~~~l~~l~~~~~~~-------~------------------~~~~~~~s~lL~~ldg~~~~~~~~~ivI~TTN~~~~L 317 (431)
...+..+|..+... + ......+..+|+.+++... ...++||+|||.++.|
T Consensus 81 ~~~~~~~~~~~~~a~~~~~~vl~iDeid~l~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~--~~~~~vi~~tn~~~~l 158 (262)
T 2qz4_A 81 GLGAARVRSLFKEARARAPCIVYIDEIDAVGKKRSTTMSGFSNTEEEQTLNQLLVEMDGMGT--TDHVIVLASTNRADIL 158 (262)
T ss_dssp THHHHHHHHHHHHHHHTCSEEEEEECC-------------------CHHHHHHHHHHHTCCT--TCCEEEEEEESCGGGG
T ss_pred ChhHHHHHHHHHHHHhcCCeEEEEeCcchhhccccccccCccchhHHHHHHHHHHHhhCcCC--CCCEEEEecCCChhhc
Confidence 24566677665432 0 1123467889999998754 3459999999999999
Q ss_pred ChhhhccCceeEEEEcCCCCHHHHHHHHHHhhchhcchhHH--HHHhHhcc-CCCCHHHHHHHhcc
Q 035603 318 DPALIRRGRMDKHIEMPYCCFEAFKVLAKNYLEIESHELFH--EIGSLLGE-TDITPADVAENLMP 380 (431)
Q Consensus 318 d~AllRpGRfd~~I~~~~p~~~~r~~i~~~~l~~~~~~~~~--~i~~l~~~-~~~s~adI~~~l~~ 380 (431)
|++++|||||+..+++++|+.++|.+|++.++......... .+..++.. .|+++++|..++..
T Consensus 159 d~~l~~~~R~~~~i~i~~p~~~~r~~il~~~~~~~~~~~~~~~~~~~l~~~~~g~~~~~l~~l~~~ 224 (262)
T 2qz4_A 159 DGALMRPGRLDRHVFIDLPTLQERREIFEQHLKSLKLTQSSTFYSQRLAELTPGFSGADIANICNE 224 (262)
T ss_dssp GSGGGSTTSCCEEEECCSCCHHHHHHHHHHHHHHTTCCBTHHHHHHHHHHTCTTCCHHHHHHHHHH
T ss_pred CHHHhcCCcCCeEEEeCCcCHHHHHHHHHHHHHhCCCCcchhhHHHHHHHHCCCCCHHHHHHHHHH
Confidence 99999999999999999999999999999998654332222 23455553 49999999877654
No 16
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=99.93 E-value=3.2e-25 Score=219.27 Aligned_cols=191 Identities=20% Similarity=0.237 Sum_probs=156.5
Q ss_pred eccCCCCccccccChhhHHHHHHHHHHHHhCHHHHHHhCCCCCceeEEeCCCCCcHHHHHHHHHHHcCCCeEEecccCcC
Q 035603 185 YFEHPATFDTLAMASKKKEAIKKDLIKFTEGKEYYAKIGKAWKRGYLLFGPPGTGKSTMIAAMANCLNYDVYDLELTSVE 264 (431)
Q Consensus 185 ~~~~p~~f~~l~g~~~~k~~i~~~l~~~~~~~~~~~~~g~~~~rg~LL~GPPGtGKTsla~aiA~~l~~~i~~l~~~~~~ 264 (431)
.-.++.+|++|+|.+++|+.|.+.+..++..++.|.. +..+++|+|||||||||||++|+++|++++.+++.++++.+.
T Consensus 10 ~~~~~~~~~di~G~~~~~~~l~~~i~~~~~~~~~~~~-~~~~~~~vLl~GppGtGKT~la~aia~~~~~~~~~v~~~~l~ 88 (322)
T 3eie_A 10 SEKPNVKWEDVAGLEGAKEALKEAVILPVKFPHLFKG-NRKPTSGILLYGPPGTGKSYLAKAVATEANSTFFSVSSSDLV 88 (322)
T ss_dssp EECCCCCGGGSCSCHHHHHHHHHHTHHHHHCGGGCCT-TCCCCCEEEEECSSSSCHHHHHHHHHHHHTCEEEEEEHHHHH
T ss_pred ecCCCCCHHHhcChHHHHHHHHHHHHHHHhCHHHHhc-CCCCCCeEEEECCCCCcHHHHHHHHHHHHCCCEEEEchHHHh
Confidence 4456789999999999999999999999999988876 455578999999999999999999999999999999987652
Q ss_pred ------ChHHHHHHHHHhhhc---------------------ccchhhHHHHHHHHhcCcccCCCCceEEEEecCCCCCC
Q 035603 265 ------NNNELRSLLVDISSK---------------------KKKSNVTLSGLLNCIGGLWSTCGGERIIVFTTNHVDKL 317 (431)
Q Consensus 265 ------~~~~l~~l~~~~~~~---------------------~~~~~~~~s~lL~~ldg~~~~~~~~~ivI~TTN~~~~L 317 (431)
....++.+|..+... ........+.||..++++... ..+++||+|||+++.|
T Consensus 89 ~~~~g~~~~~~~~~f~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~-~~~v~vi~atn~~~~l 167 (322)
T 3eie_A 89 SKWMGESEKLVKQLFAMARENKPSIIFIDQVDALTGTRGEGESEASRRIKTELLVQMNGVGND-SQGVLVLGATNIPWQL 167 (322)
T ss_dssp TTTGGGHHHHHHHHHHHHHHTSSEEEEEECGGGGSCC------CCTHHHHHHHHHHHGGGGTS-CCCEEEEEEESCGGGS
T ss_pred hcccchHHHHHHHHHHHHHhcCCeEEEechhhhhhccCCCCcchHHHHHHHHHHHHhcccccc-CCceEEEEecCChhhC
Confidence 234567777665543 112345689999999998533 3469999999999999
Q ss_pred ChhhhccCceeEEEEcCCCCHHHHHHHHHHhhchhcch-hHHHHHhHhccC-CCCHHHHHHHhc
Q 035603 318 DPALIRRGRMDKHIEMPYCCFEAFKVLAKNYLEIESHE-LFHEIGSLLGET-DITPADVAENLM 379 (431)
Q Consensus 318 d~AllRpGRfd~~I~~~~p~~~~r~~i~~~~l~~~~~~-~~~~i~~l~~~~-~~s~adI~~~l~ 379 (431)
|++++| ||+..|+++.|+.++|.+|++.++...... ....+..++..+ |++++||..++.
T Consensus 168 d~al~~--Rf~~~i~~~~p~~~~r~~il~~~~~~~~~~~~~~~l~~la~~t~g~sg~di~~l~~ 229 (322)
T 3eie_A 168 DSAIRR--RFERRIYIPLPDLAARTTMFEINVGDTPCVLTKEDYRTLGAMTEGYSGSDIAVVVK 229 (322)
T ss_dssp CHHHHH--HCCEEEECCCCCHHHHHHHHHHHHTTCCCCCCHHHHHHHHHTTTTCCHHHHHHHHH
T ss_pred CHHHHc--ccCeEEEeCCCCHHHHHHHHHHHhccCCCCCCHHHHHHHHHHcCCCCHHHHHHHHH
Confidence 999999 999999999999999999999998754432 344567777644 999999997764
No 17
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=99.92 E-value=1.2e-24 Score=218.25 Aligned_cols=189 Identities=21% Similarity=0.257 Sum_probs=152.3
Q ss_pred cCCCCccccccChhhHHHHHHHHHHHHhCHHHHHHhCCCCCceeEEeCCCCCcHHHHHHHHHHHcCCCeEEecccCc---
Q 035603 187 EHPATFDTLAMASKKKEAIKKDLIKFTEGKEYYAKIGKAWKRGYLLFGPPGTGKSTMIAAMANCLNYDVYDLELTSV--- 263 (431)
Q Consensus 187 ~~p~~f~~l~g~~~~k~~i~~~l~~~~~~~~~~~~~g~~~~rg~LL~GPPGtGKTsla~aiA~~l~~~i~~l~~~~~--- 263 (431)
.++.+|++|+|.+++++.|.+.+..++..++.|.. +..+++|+|||||||||||++|+++|++++.+++.++++++
T Consensus 45 ~~~~~~~di~G~~~~~~~l~~~v~~~~~~~~~~~~-~~~~~~~iLL~GppGtGKT~la~ala~~~~~~~~~v~~~~l~~~ 123 (355)
T 2qp9_X 45 KPNVKWEDVAGLEGAKEALKEAVILPVKFPHLFKG-NRKPTSGILLYGPPGTGKSYLAKAVATEANSTFFSVSSSDLVSK 123 (355)
T ss_dssp --CCCGGGSCCGGGHHHHHHHHTHHHHHCGGGGCS-SCCCCCCEEEECSTTSCHHHHHHHHHHHHTCEEEEEEHHHHHSC
T ss_pred CCCCCHHHhCCHHHHHHHHHHHHHHHHhCHHHHhc-CCCCCceEEEECCCCCcHHHHHHHHHHHhCCCEEEeeHHHHhhh
Confidence 35688999999999999999999999999988876 56677899999999999999999999999999999987764
Q ss_pred ---CChHHHHHHHHHhhhc-------c--------------cchhhHHHHHHHHhcCcccCCCCceEEEEecCCCCCCCh
Q 035603 264 ---ENNNELRSLLVDISSK-------K--------------KKSNVTLSGLLNCIGGLWSTCGGERIIVFTTNHVDKLDP 319 (431)
Q Consensus 264 ---~~~~~l~~l~~~~~~~-------~--------------~~~~~~~s~lL~~ldg~~~~~~~~~ivI~TTN~~~~Ld~ 319 (431)
.....++.+|..+... + .......++||..||++... ..+++||+|||+++.||+
T Consensus 124 ~~g~~~~~~~~~f~~a~~~~~~vl~iDEid~l~~~r~~~~~~~~~~~~~~ll~~l~~~~~~-~~~v~vI~atn~~~~ld~ 202 (355)
T 2qp9_X 124 WMGESEKLVKQLFAMARENKPSIIFIDQVDALTGTRGEGESEASRRIKTELLVQMNGVGND-SQGVLVLGATNIPWQLDS 202 (355)
T ss_dssp C---CHHHHHHHHHHHHHTSSEEEEEECGGGGTC------CTHHHHHHHHHHHHHHHCC----CCEEEEEEESCGGGSCH
T ss_pred hcchHHHHHHHHHHHHHHcCCeEEEEechHhhcccCCCCcchHHHHHHHHHHHHhhccccc-CCCeEEEeecCCcccCCH
Confidence 2345567777665432 1 11245688999999988542 345999999999999999
Q ss_pred hhhccCceeEEEEcCCCCHHHHHHHHHHhhchhcch-hHHHHHhHhcc-CCCCHHHHHHHhc
Q 035603 320 ALIRRGRMDKHIEMPYCCFEAFKVLAKNYLEIESHE-LFHEIGSLLGE-TDITPADVAENLM 379 (431)
Q Consensus 320 AllRpGRfd~~I~~~~p~~~~r~~i~~~~l~~~~~~-~~~~i~~l~~~-~~~s~adI~~~l~ 379 (431)
+++| ||+..|++++|+.++|..|++.++...... ...++..++.. .||+++||..+|.
T Consensus 203 al~r--Rf~~~i~i~~P~~~~r~~il~~~l~~~~~~~~~~~l~~la~~t~G~sg~dl~~l~~ 262 (355)
T 2qp9_X 203 AIRR--RFERRIYIPLPDLAARTTMFEINVGDTPSVLTKEDYRTLGAMTEGYSGSDIAVVVK 262 (355)
T ss_dssp HHHH--TCCEEEECCCCCHHHHHHHHHHHHTTSCBCCCHHHHHHHHHHTTTCCHHHHHHHHH
T ss_pred HHHc--ccCEEEEeCCcCHHHHHHHHHHHHhhCCCCCCHHHHHHHHHHcCCCCHHHHHHHHH
Confidence 9999 999999999999999999999998754432 23456666664 4999999997765
No 18
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=99.91 E-value=2.6e-24 Score=224.20 Aligned_cols=190 Identities=22% Similarity=0.264 Sum_probs=158.4
Q ss_pred CCCCccccccChhhHHHHHHHHHHHHhCHHHHHHhCCCCCceeEEeCCCCCcHHHHHHHHHHHcCCCeEEecccCcC---
Q 035603 188 HPATFDTLAMASKKKEAIKKDLIKFTEGKEYYAKIGKAWKRGYLLFGPPGTGKSTMIAAMANCLNYDVYDLELTSVE--- 264 (431)
Q Consensus 188 ~p~~f~~l~g~~~~k~~i~~~l~~~~~~~~~~~~~g~~~~rg~LL~GPPGtGKTsla~aiA~~l~~~i~~l~~~~~~--- 264 (431)
.+.+|++|+|.+.+++.|.+.+..++..++.|..+|.+.++++|||||||||||++|+++|++++.+++.++++.+.
T Consensus 199 ~~~~~~~i~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLL~GppGtGKT~lAraia~~~~~~fv~vn~~~l~~~~ 278 (489)
T 3hu3_A 199 NEVGYDDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKL 278 (489)
T ss_dssp TCCCGGGCCSCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCCEEEEECSTTSSHHHHHHHHHHHCSSEEEEEEHHHHHTSC
T ss_pred CCCCHHHcCCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCcEEEECcCCCCHHHHHHHHHHHhCCCEEEEEchHhhhhh
Confidence 45789999999999999999999999999999999999999999999999999999999999999999999987652
Q ss_pred ---ChHHHHHHHHHhhhc---------------------ccchhhHHHHHHHHhcCcccCCCCceEEEEecCCCCCCChh
Q 035603 265 ---NNNELRSLLVDISSK---------------------KKKSNVTLSGLLNCIGGLWSTCGGERIIVFTTNHVDKLDPA 320 (431)
Q Consensus 265 ---~~~~l~~l~~~~~~~---------------------~~~~~~~~s~lL~~ldg~~~~~~~~~ivI~TTN~~~~Ld~A 320 (431)
....++.+|..+... ........+.||..|++.... ..++||+|||+++.||++
T Consensus 279 ~g~~~~~~~~~f~~A~~~~p~iLfLDEId~l~~~~~~~~~~~~~~~~~~LL~~ld~~~~~--~~v~vIaaTn~~~~Ld~a 356 (489)
T 3hu3_A 279 AGESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQR--AHVIVMAATNRPNSIDPA 356 (489)
T ss_dssp TTHHHHHHHHHHHHHHHTCSEEEEEESHHHHCBCTTSCCCHHHHHHHHHHHHHHHHSCTT--SCEEEEEEESCGGGBCGG
T ss_pred cchhHHHHHHHHHHHHhcCCcEEEecchhhhccccccccchHHHHHHHHHHHHhhccccC--CceEEEEecCCccccCHH
Confidence 234567777766543 111236788999999987543 459999999999999999
Q ss_pred hhccCceeEEEEcCCCCHHHHHHHHHHhhchhcchhHHHHHhHhcc-CCCCHHHHHHHhc
Q 035603 321 LIRRGRMDKHIEMPYCCFEAFKVLAKNYLEIESHELFHEIGSLLGE-TDITPADVAENLM 379 (431)
Q Consensus 321 llRpGRfd~~I~~~~p~~~~r~~i~~~~l~~~~~~~~~~i~~l~~~-~~~s~adI~~~l~ 379 (431)
++|+|||+..|+++.|+.++|.+|++.++.........++..++.. .|++++||..++.
T Consensus 357 l~r~gRf~~~i~i~~P~~~eR~~IL~~~~~~~~l~~~~~l~~la~~t~g~s~~dL~~L~~ 416 (489)
T 3hu3_A 357 LRRFGRFDREVDIGIPDATGRLEILQIHTKNMKLADDVDLEQVANETHGHVGADLAALCS 416 (489)
T ss_dssp GGSTTSSCEEEECCCCCHHHHHHHHHHHTTTSCBCTTCCHHHHHHTCTTCCHHHHHHHHH
T ss_pred HhCCCcCceEEEeCCCCHHHHHHHHHHHHhcCCCcchhhHHHHHHHccCCcHHHHHHHHH
Confidence 9999999999999999999999999998864433322235556653 4999999987764
No 19
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=99.91 E-value=1.8e-24 Score=225.44 Aligned_cols=211 Identities=23% Similarity=0.308 Sum_probs=161.3
Q ss_pred CCCCccccccChhhHHHHHHHHHHHHhCHHHHHHhCCCCCceeEEeCCCCCcHHHHHHHHHHHcCCCeEEecccCcCC--
Q 035603 188 HPATFDTLAMASKKKEAIKKDLIKFTEGKEYYAKIGKAWKRGYLLFGPPGTGKSTMIAAMANCLNYDVYDLELTSVEN-- 265 (431)
Q Consensus 188 ~p~~f~~l~g~~~~k~~i~~~l~~~~~~~~~~~~~g~~~~rg~LL~GPPGtGKTsla~aiA~~l~~~i~~l~~~~~~~-- 265 (431)
++.+|++|+|.+++|+++.+.+ .++..+..|..+|...++|+||+||||||||+|+++||++++.+++.++.+++..
T Consensus 26 ~~~~f~dv~G~~~~k~~l~~lv-~~l~~~~~~~~lg~~ip~GvLL~GppGtGKTtLaraIa~~~~~~~i~i~g~~~~~~~ 104 (499)
T 2dhr_A 26 PKVTFKDVAGAEEAKEELKEIV-EFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEARVPFITASGSDFVEMF 104 (499)
T ss_dssp CCCCTTSSCSCHHHHHHHHHHH-HHHHCGGGTTTTSCCCCSEEEEECSSSSSHHHHHHHHHHHTTCCEEEEEGGGGTSSC
T ss_pred CCCCHHHcCCcHHHHHHHHHHH-HHhhchhhhhhccCCCCceEEEECCCCCCHHHHHHHHHHHhCCCEEEEehhHHHHhh
Confidence 5689999999999999997754 5677888899999999999999999999999999999999999999999877532
Q ss_pred ----hHHHHHHHHHhhhc----------------cc--------chhhHHHHHHHHhcCcccCCCCceEEEEecCCCCCC
Q 035603 266 ----NNELRSLLVDISSK----------------KK--------KSNVTLSGLLNCIGGLWSTCGGERIIVFTTNHVDKL 317 (431)
Q Consensus 266 ----~~~l~~l~~~~~~~----------------~~--------~~~~~~s~lL~~ldg~~~~~~~~~ivI~TTN~~~~L 317 (431)
...++.+|..+... .. ....++++||..|||... ...+++|++||+|+.|
T Consensus 105 ~g~~~~~v~~lfq~a~~~~p~il~IDEId~l~~~r~~~~~~~~~e~~~~l~~LL~~Ldg~~~--~~~viviAatn~p~~L 182 (499)
T 2dhr_A 105 VGVGAARVRDLFETAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMDGFEK--DTAIVVMAATNRPDIL 182 (499)
T ss_dssp TTHHHHHHHHHTTTSSSSSSCEEEEECGGGTCCCSSSSTTTSSHHHHHHHHHHHHHGGGCCS--SCCCEEEECCSCGGGS
T ss_pred hhhHHHHHHHHHHHHHhcCCCEEEEehHHHHHHhhccCcCCCcHHHHHHHHHHHHHhccccc--CccEEEEEecCChhhc
Confidence 24566777665421 00 113578899999999854 3448999999999999
Q ss_pred ChhhhccCceeEEEEcCCCCHHHHHHHHHHhhchhcchhHHHHHhHhcc-CCCCHHHHHHHhcccC----CCCCHHHHHH
Q 035603 318 DPALIRRGRMDKHIEMPYCCFEAFKVLAKNYLEIESHELFHEIGSLLGE-TDITPADVAENLMPKS----DEDDAGTCLK 392 (431)
Q Consensus 318 d~AllRpGRfd~~I~~~~p~~~~r~~i~~~~l~~~~~~~~~~i~~l~~~-~~~s~adI~~~l~~~~----~~~~~~~~l~ 392 (431)
||+++||||||++|+++.|+.++|.+|++.++.........++..++.. .|++++||.+++..+. .........+
T Consensus 183 D~aLlr~gRfdr~i~i~~Pd~~~R~~IL~~~~~~~~l~~dv~l~~lA~~t~G~~gadL~~lv~~Aa~~A~~~~~~~It~~ 262 (499)
T 2dhr_A 183 DPALLRPGRFDRQIAIDAPDVKGREQILRIHARGKPLAEDVDLALLAKRTPGFVGADLENLLNEAALLAAREGRRKITMK 262 (499)
T ss_dssp CTTTSSTTSSCCEEECCCCCHHHHHHHHHHTTSSSCCCCSSTTHHHHTTSCSCCHHHHHHHHHHHHHHHTTTCCSSCCSH
T ss_pred CcccccccccceEEecCCCCHHHHHHHHHHHHhcCCCChHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhCCCccCHH
Confidence 9999999999999999999999999999988753222212224455554 3999999998775411 1111234446
Q ss_pred HHHHHHHHH
Q 035603 393 NLIEALKAA 401 (431)
Q Consensus 393 ~l~~~l~~~ 401 (431)
++..++++.
T Consensus 263 dl~~al~~v 271 (499)
T 2dhr_A 263 DLEEAADRV 271 (499)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 666666554
No 20
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=99.91 E-value=1.1e-23 Score=200.77 Aligned_cols=190 Identities=23% Similarity=0.316 Sum_probs=148.1
Q ss_pred cCCCCccccccChhhHHHHHHHHHHHHhCHHHHHHhCCCCCceeEEeCCCCCcHHHHHHHHHHHcCCCeEEecccCcC--
Q 035603 187 EHPATFDTLAMASKKKEAIKKDLIKFTEGKEYYAKIGKAWKRGYLLFGPPGTGKSTMIAAMANCLNYDVYDLELTSVE-- 264 (431)
Q Consensus 187 ~~p~~f~~l~g~~~~k~~i~~~l~~~~~~~~~~~~~g~~~~rg~LL~GPPGtGKTsla~aiA~~l~~~i~~l~~~~~~-- 264 (431)
.++.+|++++|.++++.++.+.+ ..+..+..+...+...++|++|+||||||||+|+++||+.++..++.++...+.
T Consensus 10 ~~~~~~~~i~g~~~~~~~l~~l~-~~~~~~~~~~~~~~~~~~g~ll~G~~G~GKTtl~~~i~~~~~~~~i~~~~~~~~~~ 88 (254)
T 1ixz_A 10 APKVTFKDVAGAEEAKEELKEIV-EFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEARVPFITASGSDFVEM 88 (254)
T ss_dssp CCSCCGGGCCSCHHHHHHHHHHH-HHHHCHHHHHHTTCCCCSEEEEECCTTSSHHHHHHHHHHHTTCCEEEEEHHHHHHS
T ss_pred CCCCCHHHhCCcHHHHHHHHHHH-HHHHCHHHHHHcCCCCCCeEEEECCCCCCHHHHHHHHHHHhCCCEEEeeHHHHHHH
Confidence 34589999999999999997754 456778899999999999999999999999999999999999999988765431
Q ss_pred ----ChHHHHHHHHHhhhc-------cc-----------------chhhHHHHHHHHhcCcccCCCCceEEEEecCCCCC
Q 035603 265 ----NNNELRSLLVDISSK-------KK-----------------KSNVTLSGLLNCIGGLWSTCGGERIIVFTTNHVDK 316 (431)
Q Consensus 265 ----~~~~l~~l~~~~~~~-------~~-----------------~~~~~~s~lL~~ldg~~~~~~~~~ivI~TTN~~~~ 316 (431)
....+..+|...... +. .....++.+++.++|... +..++++++||+|+.
T Consensus 89 ~~~~~~~~i~~~~~~~~~~~~~i~~~Deid~l~~~~~~~~~~~~~~~~~~~~~ll~~l~g~~~--~~~~i~~a~t~~p~~ 166 (254)
T 1ixz_A 89 FVGVGAARVRDLFETAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMDGFEK--DTAIVVMAATNRPDI 166 (254)
T ss_dssp CTTHHHHHHHHHHHHHTTSSSEEEEEETHHHHHC---------CHHHHHHHHHHHHHHHTCCT--TCCEEEEEEESCGGG
T ss_pred HhhHHHHHHHHHHHHHHhcCCeEEEehhhhhhhcccCccccccchHHHHHHHHHHHHHhCCCC--CCCEEEEEccCCchh
Confidence 123456666665421 00 113456789999998754 334789999999999
Q ss_pred CChhhhccCceeEEEEcCCCCHHHHHHHHHHhhchhcchhHHHHHhHhcc-CCCCHHHHHHHhc
Q 035603 317 LDPALIRRGRMDKHIEMPYCCFEAFKVLAKNYLEIESHELFHEIGSLLGE-TDITPADVAENLM 379 (431)
Q Consensus 317 Ld~AllRpGRfd~~I~~~~p~~~~r~~i~~~~l~~~~~~~~~~i~~l~~~-~~~s~adI~~~l~ 379 (431)
||++++||||||..|+++.|+.++|..|++.+..........++..++.. .|++++||..++.
T Consensus 167 ld~~l~r~~rf~~~i~i~~p~~~~r~~il~~~~~~~~~~~~~~~~~la~~~~G~~~~dl~~~~~ 230 (254)
T 1ixz_A 167 LDPALLRPGRFDRQIAIDAPDVKGREQILRIHARGKPLAEDVDLALLAKRTPGFVGADLENLLN 230 (254)
T ss_dssp SCGGGGSTTSSCEEEECCSCCHHHHHHHHHHHHTTSCBCTTCCHHHHHHTCTTCCHHHHHHHHH
T ss_pred CCHHHcCCCcCCeEEeeCCcCHHHHHHHHHHHHcCCCCCcccCHHHHHHHcCCCCHHHHHHHHH
Confidence 99999999999999999999999999999988753322212224455553 4999999987776
No 21
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=99.91 E-value=5.7e-24 Score=219.52 Aligned_cols=189 Identities=21% Similarity=0.229 Sum_probs=151.8
Q ss_pred cCCCCccccccChhhHHHHHHHHHHHHhCHHHHHHhCCCCCceeEEeCCCCCcHHHHHHHHHHHc-CCCeEEecccCcC-
Q 035603 187 EHPATFDTLAMASKKKEAIKKDLIKFTEGKEYYAKIGKAWKRGYLLFGPPGTGKSTMIAAMANCL-NYDVYDLELTSVE- 264 (431)
Q Consensus 187 ~~p~~f~~l~g~~~~k~~i~~~l~~~~~~~~~~~~~g~~~~rg~LL~GPPGtGKTsla~aiA~~l-~~~i~~l~~~~~~- 264 (431)
.++.+|++|+|.+++++.|.+.+..++..+..|.. +..+++|+|||||||||||++|+++|+++ +.+++.++++++.
T Consensus 128 ~~~~~~~di~G~~~~k~~l~~~v~~p~~~~~~~~~-~~~~~~~vLL~GppGtGKT~lA~aia~~~~~~~~~~v~~~~l~~ 206 (444)
T 2zan_A 128 RPNVKWSDVAGLEGAKEALKEAVILPIKFPHLFTG-KRTPWRGILLFGPPGTGKSYLAKAVATEANNSTFFSISSSDLVS 206 (444)
T ss_dssp CCCCCGGGSCSCHHHHHHHHHHHTHHHHCTTTTSG-GGCCCSEEEEECSTTSSHHHHHHHHHHHCCSSEEEEECCC----
T ss_pred CCCCCHHHhcCHHHHHHHHHHHHHHHhhCHHHhhc-cCCCCceEEEECCCCCCHHHHHHHHHHHcCCCCEEEEeHHHHHh
Confidence 45689999999999999999999999998888764 34567899999999999999999999999 8999999988762
Q ss_pred -----ChHHHHHHHHHhhhc---------------------ccchhhHHHHHHHHhcCcccCCCCceEEEEecCCCCCCC
Q 035603 265 -----NNNELRSLLVDISSK---------------------KKKSNVTLSGLLNCIGGLWSTCGGERIIVFTTNHVDKLD 318 (431)
Q Consensus 265 -----~~~~l~~l~~~~~~~---------------------~~~~~~~~s~lL~~ldg~~~~~~~~~ivI~TTN~~~~Ld 318 (431)
....++.+|..+... .......++.||..+|++.. ...+++||+|||+++.||
T Consensus 207 ~~~g~~~~~~~~~f~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~lL~~l~~~~~-~~~~v~vI~atn~~~~ld 285 (444)
T 2zan_A 207 KWLGESEKLVKNLFQLARENKPSIIFIDEIDSLCGSRSENESEAARRIKTEFLVQMQGVGV-DNDGILVLGATNIPWVLD 285 (444)
T ss_dssp -----CCCTHHHHHHHHHHSCSEEEEESCTTTTCCCSSCCCCGGGHHHHHHHHTTTTCSSC-CCSSCEEEEEESCGGGSC
T ss_pred hhcchHHHHHHHHHHHHHHcCCeEEEEechHhhccCCCCccccHHHHHHHHHHHHHhCccc-CCCCEEEEecCCCccccC
Confidence 223466777655432 11234678899999999853 235699999999999999
Q ss_pred hhhhccCceeEEEEcCCCCHHHHHHHHHHhhchhcch-hHHHHHhHhcc-CCCCHHHHHHHhc
Q 035603 319 PALIRRGRMDKHIEMPYCCFEAFKVLAKNYLEIESHE-LFHEIGSLLGE-TDITPADVAENLM 379 (431)
Q Consensus 319 ~AllRpGRfd~~I~~~~p~~~~r~~i~~~~l~~~~~~-~~~~i~~l~~~-~~~s~adI~~~l~ 379 (431)
|+++| ||+..|++++|+.++|..|++.++...... ...++..++.. .|||++||..++.
T Consensus 286 ~al~r--Rf~~~i~i~~P~~~~r~~il~~~l~~~~~~l~~~~l~~la~~t~G~sgadl~~l~~ 346 (444)
T 2zan_A 286 SAIRR--RFEKRIYIPLPEAHARAAMFRLHLGSTQNSLTEADFQELGRKTDGYSGADISIIVR 346 (444)
T ss_dssp HHHHT--TCCEEEECCCCCHHHHHHHHHHHHTTSCEECCHHHHHHHHHHTTTCCHHHHHHHHH
T ss_pred HHHHh--hcceEEEeCCcCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHcCCCCHHHHHHHHH
Confidence 99999 999999999999999999999998654332 23456666664 4999999997765
No 22
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=99.90 E-value=1.1e-24 Score=208.93 Aligned_cols=191 Identities=25% Similarity=0.327 Sum_probs=148.1
Q ss_pred CCCCccccccChhhHHHHHHHHHHHHhCHHHHHHhCCCCCceeEEeCCCCCcHHHHHHHHHHHcCCCeEEecccCcC---
Q 035603 188 HPATFDTLAMASKKKEAIKKDLIKFTEGKEYYAKIGKAWKRGYLLFGPPGTGKSTMIAAMANCLNYDVYDLELTSVE--- 264 (431)
Q Consensus 188 ~p~~f~~l~g~~~~k~~i~~~l~~~~~~~~~~~~~g~~~~rg~LL~GPPGtGKTsla~aiA~~l~~~i~~l~~~~~~--- 264 (431)
++.+|++|+|.+++++.|.+.+ .++..++.|..+|...++|+||+||||||||++|+++|++++.+++.++++.+.
T Consensus 6 ~~~~~~~i~G~~~~~~~l~~~~-~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~~~~~~~~v~~~~~~~~~ 84 (268)
T 2r62_A 6 PNVRFKDMAGNEEAKEEVVEIV-DFLKYPERYANLGAKIPKGVLLVGPPGTGKTLLAKAVAGEAHVPFFSMGGSSFIEMF 84 (268)
T ss_dssp CCCCSTTSSSCTTTHHHHHHHH-HHHHCHHHHHHHSCCCCSCCCCBCSSCSSHHHHHHHHHHHHTCCCCCCCSCTTTTSC
T ss_pred CCCCHHHhCCcHHHHHHHHHHH-HHHHChHHHHHCCCCCCceEEEECCCCCcHHHHHHHHHHHhCCCEEEechHHHHHhh
Confidence 4578999999999999998855 468889999999999999999999999999999999999999999999877652
Q ss_pred ---ChHHHHHHHHHhhhc-------ccc------------------hhhHHHHHHHHhcCcccCCCCceEEEEecCCCCC
Q 035603 265 ---NNNELRSLLVDISSK-------KKK------------------SNVTLSGLLNCIGGLWSTCGGERIIVFTTNHVDK 316 (431)
Q Consensus 265 ---~~~~l~~l~~~~~~~-------~~~------------------~~~~~s~lL~~ldg~~~~~~~~~ivI~TTN~~~~ 316 (431)
....++.+|..+... ++. ....++.||+.+++... ....++||+|||.++.
T Consensus 85 ~~~~~~~~~~~~~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~-~~~~v~vi~ttn~~~~ 163 (268)
T 2r62_A 85 VGLGASRVRDLFETAKKQAPSIIFIDEIDAIGKSRAAGGVVSGNDEREQTLNQLLAEMDGFGS-ENAPVIVLAATNRPEI 163 (268)
T ss_dssp SSSCSSSSSTTHHHHHHSCSCEEEESCGGGTTC----------CCCSCSSTTTTTTTTTCSSC-SCSCCEEEECBSCCTT
T ss_pred cchHHHHHHHHHHHHHhcCCeEEEEeChhhhcccccccccCCCchhHHHHHHHHHHHhhCccc-CCCCEEEEEecCCchh
Confidence 122344455444331 111 11356778888888753 2345899999999999
Q ss_pred CChhhhccCceeEEEEcCCCCHHHHHHHHHHhhchhcchhHHHHHhHhcc-CCCCHHHHHHHhcc
Q 035603 317 LDPALIRRGRMDKHIEMPYCCFEAFKVLAKNYLEIESHELFHEIGSLLGE-TDITPADVAENLMP 380 (431)
Q Consensus 317 Ld~AllRpGRfd~~I~~~~p~~~~r~~i~~~~l~~~~~~~~~~i~~l~~~-~~~s~adI~~~l~~ 380 (431)
||++++|||||+..|+++.|+.++|..+++.++..........+..++.. .|++++||.+++..
T Consensus 164 ld~~l~r~~Rf~~~i~i~~p~~~~r~~il~~~~~~~~~~~~~~~~~la~~~~g~~g~dl~~l~~~ 228 (268)
T 2r62_A 164 LDPALMRPGRFDRQVLVDKPDFNGRVEILKVHIKGVKLANDVNLQEVAKLTAGLAGADLANIINE 228 (268)
T ss_dssp SCGGGGSSSSSCCCCBCCCCCTTTHHHHHHHHTSSSCCCSSCCTTTTTSSSCSSCHHHHHHHHHH
T ss_pred cCHhHcCCCCCCeEEEecCcCHHHHHHHHHHHHhcCCCCCccCHHHHHHHcCCCCHHHHHHHHHH
Confidence 99999999999999999999999999999998864322111224445553 38999999877653
No 23
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=99.89 E-value=1.9e-22 Score=195.07 Aligned_cols=190 Identities=23% Similarity=0.316 Sum_probs=148.0
Q ss_pred cCCCCccccccChhhHHHHHHHHHHHHhCHHHHHHhCCCCCceeEEeCCCCCcHHHHHHHHHHHcCCCeEEecccCcC--
Q 035603 187 EHPATFDTLAMASKKKEAIKKDLIKFTEGKEYYAKIGKAWKRGYLLFGPPGTGKSTMIAAMANCLNYDVYDLELTSVE-- 264 (431)
Q Consensus 187 ~~p~~f~~l~g~~~~k~~i~~~l~~~~~~~~~~~~~g~~~~rg~LL~GPPGtGKTsla~aiA~~l~~~i~~l~~~~~~-- 264 (431)
.++.+|++|+|.+++++++.+.+ ..+..+..+..++...++|++|+||||||||+|+++||+.++..++.++...+.
T Consensus 34 ~~~~~~~~i~g~~~~~~~l~~l~-~~~~~~~~l~~~~~~~~~gvll~Gp~GtGKTtl~~~i~~~~~~~~i~~~~~~~~~~ 112 (278)
T 1iy2_A 34 APKVTFKDVAGAEEAKEELKEIV-EFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEARVPFITASGSDFVEM 112 (278)
T ss_dssp CCCCCGGGSSSCHHHHHHHHHHH-HHHHCHHHHHHTTCCCCCEEEEECCTTSSHHHHHHHHHHHTTCCEEEEEHHHHHHS
T ss_pred CCCCCHHHhCChHHHHHHHHHHH-HHHHCHHHHHHcCCCCCCeEEEECCCcChHHHHHHHHHHHcCCCEEEecHHHHHHH
Confidence 35689999999999999987654 456778899999999999999999999999999999999999999988765431
Q ss_pred ----ChHHHHHHHHHhhhc-------cc-----------------chhhHHHHHHHHhcCcccCCCCceEEEEecCCCCC
Q 035603 265 ----NNNELRSLLVDISSK-------KK-----------------KSNVTLSGLLNCIGGLWSTCGGERIIVFTTNHVDK 316 (431)
Q Consensus 265 ----~~~~l~~l~~~~~~~-------~~-----------------~~~~~~s~lL~~ldg~~~~~~~~~ivI~TTN~~~~ 316 (431)
....+..+|...... +. .....+..+++.++|... ...++++++||+|+.
T Consensus 113 ~~~~~~~~i~~~~~~~~~~~~~i~~iDeid~l~~~~~~~~~~~~~~~~~~~~~ll~~lsgg~~--~~~~i~~a~t~~p~~ 190 (278)
T 1iy2_A 113 FVGVGAARVRDLFETAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMDGFEK--DTAIVVMAATNRPDI 190 (278)
T ss_dssp TTTHHHHHHHHHHHHHHTSCSEEEEEETHHHHHCC--------CHHHHHHHHHHHHHHTTCCT--TCCEEEEEEESCTTS
T ss_pred HhhHHHHHHHHHHHHHHhcCCcEEehhhhHhhhcccccccCCcchHHHHHHHHHHHHHhCCCC--CCCEEEEEecCCchh
Confidence 123455666665421 00 113456788999998753 334789999999999
Q ss_pred CChhhhccCceeEEEEcCCCCHHHHHHHHHHhhchhcchhHHHHHhHhcc-CCCCHHHHHHHhc
Q 035603 317 LDPALIRRGRMDKHIEMPYCCFEAFKVLAKNYLEIESHELFHEIGSLLGE-TDITPADVAENLM 379 (431)
Q Consensus 317 Ld~AllRpGRfd~~I~~~~p~~~~r~~i~~~~l~~~~~~~~~~i~~l~~~-~~~s~adI~~~l~ 379 (431)
||++++|||||+..|+++.|+.++|..|++.++.........++..++.. .|++++||..++.
T Consensus 191 ld~~l~r~~rf~~~i~i~~p~~~~r~~il~~~~~~~~~~~~~~~~~la~~~~G~~~~dl~~l~~ 254 (278)
T 1iy2_A 191 LDPALLRPGRFDRQIAIDAPDVKGREQILRIHARGKPLAEDVDLALLAKRTPGFVGADLENLLN 254 (278)
T ss_dssp SCHHHHSTTSSCCEEECCCCCHHHHHHHHHHHHTTSCBCTTCCHHHHHHTCTTCCHHHHHHHHH
T ss_pred CCHhHcCCCcCCeEEEeCCcCHHHHHHHHHHHHccCCCCcccCHHHHHHHcCCCCHHHHHHHHH
Confidence 99999999999999999999999999999988753322212224455553 4999999987766
No 24
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=99.89 E-value=1.4e-22 Score=203.29 Aligned_cols=190 Identities=21% Similarity=0.283 Sum_probs=150.5
Q ss_pred CCCCccccccChhhHHHHHHHHHHHHhCHHHHHHhCCCCCceeEEeCCCCCcHHHHHHHHHHHcCCCeEEecccCcCC--
Q 035603 188 HPATFDTLAMASKKKEAIKKDLIKFTEGKEYYAKIGKAWKRGYLLFGPPGTGKSTMIAAMANCLNYDVYDLELTSVEN-- 265 (431)
Q Consensus 188 ~p~~f~~l~g~~~~k~~i~~~l~~~~~~~~~~~~~g~~~~rg~LL~GPPGtGKTsla~aiA~~l~~~i~~l~~~~~~~-- 265 (431)
+|.+|++|+|.+++++.|.+.+..++..++.|...+ ..++++||+||||||||++|+++|++++.+++.++++.+..
T Consensus 79 ~~~~~~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~-~~~~~vLl~GppGtGKT~la~aia~~~~~~~~~i~~~~l~~~~ 157 (357)
T 3d8b_A 79 PPVNWEDIAGVEFAKATIKEIVVWPMLRPDIFTGLR-GPPKGILLFGPPGTGKTLIGKCIASQSGATFFSISASSLTSKW 157 (357)
T ss_dssp CCCCGGGSCSCHHHHHHHHHHTHHHHHCTTTSCGGG-SCCSEEEEESSTTSSHHHHHHHHHHHTTCEEEEEEGGGGCCSS
T ss_pred CCCCHHHhCChHHHHHHHHHHHHHHhhChHhHhhcc-CCCceEEEECCCCCCHHHHHHHHHHHcCCeEEEEehHHhhccc
Confidence 578899999999999999999999998888877665 45789999999999999999999999999999999887632
Q ss_pred ----hHHHHHHHHHhhhc-------c--------------cchhhHHHHHHHHhcCcccCCCCceEEEEecCCCCCCChh
Q 035603 266 ----NNELRSLLVDISSK-------K--------------KKSNVTLSGLLNCIGGLWSTCGGERIIVFTTNHVDKLDPA 320 (431)
Q Consensus 266 ----~~~l~~l~~~~~~~-------~--------------~~~~~~~s~lL~~ldg~~~~~~~~~ivI~TTN~~~~Ld~A 320 (431)
...++.+|..+... + ......++.||..+++........++||+|||.++.||++
T Consensus 158 ~g~~~~~~~~~~~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~lL~~l~~~~~~~~~~v~vI~atn~~~~l~~~ 237 (357)
T 3d8b_A 158 VGEGEKMVRALFAVARCQQPAVIFIDEIDSLLSQRGDGEHESSRRIKTEFLVQLDGATTSSEDRILVVGATNRPQEIDEA 237 (357)
T ss_dssp TTHHHHHHHHHHHHHHHTCSEEEEEETHHHHTBC------CHHHHHHHHHHHHHHC----CCCCEEEEEEESCGGGBCHH
T ss_pred cchHHHHHHHHHHHHHhcCCeEEEEeCchhhhccCCCCcchHHHHHHHHHHHHHhcccccCCCCEEEEEecCChhhCCHH
Confidence 23456666554432 1 1133567889999999865555679999999999999999
Q ss_pred hhccCceeEEEEcCCCCHHHHHHHHHHhhchhcch-hHHHHHhHhcc-CCCCHHHHHHHhcc
Q 035603 321 LIRRGRMDKHIEMPYCCFEAFKVLAKNYLEIESHE-LFHEIGSLLGE-TDITPADVAENLMP 380 (431)
Q Consensus 321 llRpGRfd~~I~~~~p~~~~r~~i~~~~l~~~~~~-~~~~i~~l~~~-~~~s~adI~~~l~~ 380 (431)
++| ||+..++++.|+.++|..+++.++...... ....+..++.. .|+++++|..++..
T Consensus 238 l~~--Rf~~~i~i~~p~~~~r~~il~~~~~~~~~~l~~~~l~~la~~t~G~s~~dl~~l~~~ 297 (357)
T 3d8b_A 238 ARR--RLVKRLYIPLPEASARKQIVINLMSKEQCCLSEEEIEQIVQQSDAFSGADMTQLCRE 297 (357)
T ss_dssp HHT--TCCEEEECCCCCHHHHHHHHHHHHHTSCBCCCHHHHHHHHHHTTTCCHHHHHHHHHH
T ss_pred HHh--hCceEEEeCCcCHHHHHHHHHHHHhhcCCCccHHHHHHHHHHcCCCCHHHHHHHHHH
Confidence 999 999999999999999999999987643322 23445666663 49999999877653
No 25
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=99.89 E-value=2.5e-22 Score=203.55 Aligned_cols=192 Identities=23% Similarity=0.283 Sum_probs=153.4
Q ss_pred eccCCCCccccccChhhHHHHHHHHHHHHhCHHHHHHhCCCCCceeEEeCCCCCcHHHHHHHHHHHcCCCeEEecccCcC
Q 035603 185 YFEHPATFDTLAMASKKKEAIKKDLIKFTEGKEYYAKIGKAWKRGYLLFGPPGTGKSTMIAAMANCLNYDVYDLELTSVE 264 (431)
Q Consensus 185 ~~~~p~~f~~l~g~~~~k~~i~~~l~~~~~~~~~~~~~g~~~~rg~LL~GPPGtGKTsla~aiA~~l~~~i~~l~~~~~~ 264 (431)
...+|.+|++|+|.+.+++.|.+.+..+...++.|...+.+ ++++|||||||||||++|+++|++++.+++.++++.+.
T Consensus 107 ~~~~~~~~~~iiG~~~~~~~l~~~~~~~~~~~~~~~~~~~~-~~~vLL~GppGtGKT~la~aia~~~~~~~~~v~~~~l~ 185 (389)
T 3vfd_A 107 DNGTAVKFDDIAGQDLAKQALQEIVILPSLRPELFTGLRAP-ARGLLLFGPPGNGKTMLAKAVAAESNATFFNISAASLT 185 (389)
T ss_dssp CCSCCCCGGGSCSCHHHHHHHHHHTHHHHHCTTTSCGGGCC-CSEEEEESSTTSCHHHHHHHHHHHTTCEEEEECSCCC-
T ss_pred ccCCCCChHHhCCHHHHHHHHHHHHHHhccCHHHhcccCCC-CceEEEECCCCCCHHHHHHHHHHhhcCcEEEeeHHHhh
Confidence 45578999999999999999999999999988888877744 68999999999999999999999999999999998763
Q ss_pred ------ChHHHHHHHHHhhhc-------c--------------cchhhHHHHHHHHhcCcccCCCCceEEEEecCCCCCC
Q 035603 265 ------NNNELRSLLVDISSK-------K--------------KKSNVTLSGLLNCIGGLWSTCGGERIIVFTTNHVDKL 317 (431)
Q Consensus 265 ------~~~~l~~l~~~~~~~-------~--------------~~~~~~~s~lL~~ldg~~~~~~~~~ivI~TTN~~~~L 317 (431)
....+..+|..+... + .........||..++|........++||+|||+++.|
T Consensus 186 ~~~~g~~~~~~~~~~~~a~~~~~~il~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~v~vI~atn~~~~l 265 (389)
T 3vfd_A 186 SKYVGEGEKLVRALFAVARELQPSIIFIDQVDSLLCERREGEHDASRRLKTEFLIEFDGVQSAGDDRVLVMGATNRPQEL 265 (389)
T ss_dssp ------CHHHHHHHHHHHHHSSSEEEEEETGGGGC--------CTHHHHHHHHHHHHHHHC-----CEEEEEEESCGGGC
T ss_pred ccccchHHHHHHHHHHHHHhcCCeEEEEECchhhcccCCCccchHHHHHHHHHHHHhhcccccCCCCEEEEEecCCchhc
Confidence 234466666655442 1 1245667889999998876556679999999999999
Q ss_pred ChhhhccCceeEEEEcCCCCHHHHHHHHHHhhchhcch-hHHHHHhHhcc-CCCCHHHHHHHhc
Q 035603 318 DPALIRRGRMDKHIEMPYCCFEAFKVLAKNYLEIESHE-LFHEIGSLLGE-TDITPADVAENLM 379 (431)
Q Consensus 318 d~AllRpGRfd~~I~~~~p~~~~r~~i~~~~l~~~~~~-~~~~i~~l~~~-~~~s~adI~~~l~ 379 (431)
|++++| ||+..|+++.|+.++|..|++.++...... ....+..++.. .|+++++|..++.
T Consensus 266 ~~~l~~--R~~~~i~i~~p~~~~r~~il~~~~~~~~~~l~~~~~~~la~~~~g~~~~~l~~L~~ 327 (389)
T 3vfd_A 266 DEAVLR--RFIKRVYVSLPNEETRLLLLKNLLCKQGSPLTQKELAQLARMTDGYSGSDLTALAK 327 (389)
T ss_dssp CHHHHT--TCCEEEECCCCCHHHHHHHHHHHHTTSCCCSCHHHHHHHHHHTTTCCHHHHHHHHH
T ss_pred CHHHHc--CcceEEEcCCcCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHcCCCCHHHHHHHHH
Confidence 999999 999999999999999999999988654332 23345666663 4999999987664
No 26
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=99.88 E-value=3.4e-22 Score=194.43 Aligned_cols=190 Identities=20% Similarity=0.261 Sum_probs=148.5
Q ss_pred cCCCCccccccChhhHHHHHHHHHHHHhCHHHHHHhCCCCCceeEEeCCCCCcHHHHHHHHHHHcCCCeEEecccCcCC-
Q 035603 187 EHPATFDTLAMASKKKEAIKKDLIKFTEGKEYYAKIGKAWKRGYLLFGPPGTGKSTMIAAMANCLNYDVYDLELTSVEN- 265 (431)
Q Consensus 187 ~~p~~f~~l~g~~~~k~~i~~~l~~~~~~~~~~~~~g~~~~rg~LL~GPPGtGKTsla~aiA~~l~~~i~~l~~~~~~~- 265 (431)
.++.+|++|+|.+++++.|.+.+..+...++.|...+ ..++++||+||||||||++|+++|++++.+++.++++.+..
T Consensus 15 ~~~~~~~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~-~~~~~vll~Gp~GtGKT~la~~la~~~~~~~~~i~~~~l~~~ 93 (297)
T 3b9p_A 15 GAKVEWTDIAGQDVAKQALQEMVILPSVRPELFTGLR-APAKGLLLFGPPGNGKTLLARAVATECSATFLNISAASLTSK 93 (297)
T ss_dssp SSCCCGGGSCCCHHHHHHHHHHTHHHHHCGGGSCGGG-CCCSEEEEESSSSSCHHHHHHHHHHHTTCEEEEEESTTTSSS
T ss_pred CCCCCHHHhCChHHHHHHHHHHHHhhhhCHHHHhcCC-CCCCeEEEECcCCCCHHHHHHHHHHHhCCCeEEeeHHHHhhc
Confidence 4678999999999999999999999988888887666 34689999999999999999999999999999999877532
Q ss_pred -----hHHHHHHHHHhhhc-------c--------------cchhhHHHHHHHHhcCcccC-CCCceEEEEecCCCCCCC
Q 035603 266 -----NNELRSLLVDISSK-------K--------------KKSNVTLSGLLNCIGGLWST-CGGERIIVFTTNHVDKLD 318 (431)
Q Consensus 266 -----~~~l~~l~~~~~~~-------~--------------~~~~~~~s~lL~~ldg~~~~-~~~~~ivI~TTN~~~~Ld 318 (431)
...++.+|..+... + .......+.||..+|+.... .+..++||+|||+++.||
T Consensus 94 ~~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~v~vi~~tn~~~~l~ 173 (297)
T 3b9p_A 94 YVGDGEKLVRALFAVARHMQPSIIFIDEVDSLLSERSSSEHEASRRLKTEFLVEFDGLPGNPDGDRIVVLAATNRPQELD 173 (297)
T ss_dssp SCSCHHHHHHHHHHHHHHTCSEEEEEETGGGTSBCC-----CCSHHHHHHHHHHHHHCC------CEEEEEEESCGGGBC
T ss_pred ccchHHHHHHHHHHHHHHcCCcEEEeccHHHhccccccCcchHHHHHHHHHHHHHhcccccCCCCcEEEEeecCChhhCC
Confidence 23455566554432 1 11245677899999987543 234589999999999999
Q ss_pred hhhhccCceeEEEEcCCCCHHHHHHHHHHhhchhcch-hHHHHHhHhcc-CCCCHHHHHHHhc
Q 035603 319 PALIRRGRMDKHIEMPYCCFEAFKVLAKNYLEIESHE-LFHEIGSLLGE-TDITPADVAENLM 379 (431)
Q Consensus 319 ~AllRpGRfd~~I~~~~p~~~~r~~i~~~~l~~~~~~-~~~~i~~l~~~-~~~s~adI~~~l~ 379 (431)
++++| ||+..+++++|+.++|..+++.++...... ....+..++.. .|+++++|..++.
T Consensus 174 ~~l~~--R~~~~i~~~~p~~~~r~~il~~~~~~~~~~~~~~~~~~la~~~~g~~~~~l~~l~~ 234 (297)
T 3b9p_A 174 EAALR--RFTKRVYVSLPDEQTRELLLNRLLQKQGSPLDTEALRRLAKITDGYSGSDLTALAK 234 (297)
T ss_dssp HHHHH--HCCEEEECCCCCHHHHHHHHHHHHGGGSCCSCHHHHHHHHHHTTTCCHHHHHHHHH
T ss_pred HHHHh--hCCeEEEeCCcCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHcCCCCHHHHHHHHH
Confidence 99999 999999999999999999999988654322 23345556653 4999999987664
No 27
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=99.88 E-value=5.3e-25 Score=242.37 Aligned_cols=190 Identities=21% Similarity=0.310 Sum_probs=152.9
Q ss_pred CCCCccccccChhhHHHHHHHHHHHHhCHHHHHHhCCCCCceeEEeCCCCCcHHHHHHHHHHHcCCCeEEecccCc----
Q 035603 188 HPATFDTLAMASKKKEAIKKDLIKFTEGKEYYAKIGKAWKRGYLLFGPPGTGKSTMIAAMANCLNYDVYDLELTSV---- 263 (431)
Q Consensus 188 ~p~~f~~l~g~~~~k~~i~~~l~~~~~~~~~~~~~g~~~~rg~LL~GPPGtGKTsla~aiA~~l~~~i~~l~~~~~---- 263 (431)
+..+|++++|.+++|+.|.+.+..++..+..|..+|+..++++||+||||||||++|+++|++++.+++.++++.+
T Consensus 472 ~~v~~~di~gl~~vk~~l~~~v~~~~~~~~~~~~~~~~~~~~vLL~GppGtGKT~Lakala~~~~~~~i~v~~~~l~~~~ 551 (806)
T 1ypw_A 472 PQVTWEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQANFISIKGPELLTMW 551 (806)
T ss_dssp CCCSSCSSSCCCCHHHHHHTTTTSSSSSCTTTTCCCCCCCCCCCCBCCTTSSHHHHHHHHHHHHTCCCCCCCCSSSTTCC
T ss_pred ccccccccccchhhhhhHHHHHHhhhhchHHHHhcCCCCCceeEEECCCCCCHHHHHHHHHHHhCCCEEEEechHhhhhh
Confidence 3478999999999999999988888888888889999999999999999999999999999999999999998876
Q ss_pred --CChHHHHHHHHHhhhc-------c-----------------cchhhHHHHHHHHhcCcccCCCCceEEEEecCCCCCC
Q 035603 264 --ENNNELRSLLVDISSK-------K-----------------KKSNVTLSGLLNCIGGLWSTCGGERIIVFTTNHVDKL 317 (431)
Q Consensus 264 --~~~~~l~~l~~~~~~~-------~-----------------~~~~~~~s~lL~~ldg~~~~~~~~~ivI~TTN~~~~L 317 (431)
.....++.+|..+... + ......+++||+.||++... .+++||+|||+++.|
T Consensus 552 ~g~~~~~i~~~f~~a~~~~p~vl~iDEid~l~~~r~~~~~~~~~~~~~v~~~LL~~ld~~~~~--~~v~vI~tTN~~~~l 629 (806)
T 1ypw_A 552 FGESEANVREIFDKARQAAPCVLFFDELDSIAKARGGNIGDGGGAADRVINQILTEMDGMSTK--KNVFIIGATNRPDII 629 (806)
T ss_dssp TTTSSHHHHHHHHHHHHHCSBCCCCSSHHHHCCTTTTCCSHHHHHHHHHHHHHHTTCC--------CCBCCCCCBSCGGG
T ss_pred cCccHHHHHHHHHHHHhcCCeEEEEEChhhhhhhccCCCCCcchhHHHHHHHHHHHHhccccc--CCeEEEEecCCcccC
Confidence 2345678888766543 0 12356789999999998654 459999999999999
Q ss_pred ChhhhccCceeEEEEcCCCCHHHHHHHHHHhhchhcchhHHHHHhHhc-cCCCCHHHHHHHhc
Q 035603 318 DPALIRRGRMDKHIEMPYCCFEAFKVLAKNYLEIESHELFHEIGSLLG-ETDITPADVAENLM 379 (431)
Q Consensus 318 d~AllRpGRfd~~I~~~~p~~~~r~~i~~~~l~~~~~~~~~~i~~l~~-~~~~s~adI~~~l~ 379 (431)
|||++|||||+.+|++++|+.++|..|++.++.........++..++. ..|||++||..++.
T Consensus 630 d~allrpgRf~~~i~~~~p~~~~r~~Il~~~l~~~~~~~~~~l~~la~~t~g~sgadi~~l~~ 692 (806)
T 1ypw_A 630 DPAILRPGRLDQLIYIPLPDEKSRVAILKANLRKSPVAKDVDLEFLAKMTNGFSGADLTEICQ 692 (806)
T ss_dssp SCTTSSGGGTTSCCCCCCCCCSHHHHHTTTTTSCC----CCCCSCSCGGGSSSCCHHHHHHHH
T ss_pred CHHHhCccccCceeecCCCCHHHHHHHHHHHhccCCCCcccCHHHHHHhccccCHHHHHHHHH
Confidence 999999999999999999999999999999986432222222445555 34999999998776
No 28
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=99.86 E-value=3.8e-22 Score=194.89 Aligned_cols=150 Identities=14% Similarity=0.115 Sum_probs=111.3
Q ss_pred HhCCCCCceeEEeCCCCCcHHHHHHHHHHHcCCCeEEecccCcC------ChHHHHHHHHHhh----hc-------c---
Q 035603 221 KIGKAWKRGYLLFGPPGTGKSTMIAAMANCLNYDVYDLELTSVE------NNNELRSLLVDIS----SK-------K--- 280 (431)
Q Consensus 221 ~~g~~~~rg~LL~GPPGtGKTsla~aiA~~l~~~i~~l~~~~~~------~~~~l~~l~~~~~----~~-------~--- 280 (431)
..+..+|+|+|||||||||||++|+++|++++.+++.++++++. ....++.+|..+. .. +
T Consensus 30 ~~~~~~p~~lLl~GppGtGKT~la~aiA~~l~~~~i~v~~~~l~~~~~g~~~~~i~~~f~~a~~~~~~~~~~vl~iDEiD 109 (293)
T 3t15_A 30 LPNIKVPLILGIWGGKGQGKSFQCELVFRKMGINPIMMSAGELESGNAGEPAKLIRQRYREAAEIIRKGNMCCLFINDLD 109 (293)
T ss_dssp CTTCCCCSEEEEEECTTSCHHHHHHHHHHHHTCCCEEEEHHHHHCC---HHHHHHHHHHHHHHHHHTTSSCCCEEEECCC
T ss_pred cCCCCCCeEEEEECCCCCCHHHHHHHHHHHhCCCEEEEeHHHhhhccCchhHHHHHHHHHHHHHHHhcCCCeEEEEechh
Confidence 34678889999999999999999999999999999999987652 2345777777662 11 0
Q ss_pred ------c-------chhhHHHHHHHHhcCccc---------CCCCceEEEEecCCCCCCChhhhccCceeEEEEcCCCCH
Q 035603 281 ------K-------KSNVTLSGLLNCIGGLWS---------TCGGERIIVFTTNHVDKLDPALIRRGRMDKHIEMPYCCF 338 (431)
Q Consensus 281 ------~-------~~~~~~s~lL~~ldg~~~---------~~~~~~ivI~TTN~~~~Ld~AllRpGRfd~~I~~~~p~~ 338 (431)
. ......+.|++.||+... ....+++||+|||+++.||+|++||||||..|++ |+.
T Consensus 110 ~~~~~~~~~~~~~~~~~~v~~~Ll~~ld~~~~~~~~~~~~~~~~~~v~vI~ttN~~~~ld~al~R~~R~d~~i~~--P~~ 187 (293)
T 3t15_A 110 AGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNKQENARVPIIVTGNDFSTLYAPLIRDGRMEKFYWA--PTR 187 (293)
T ss_dssp --------------CHHHHHHHHHHHHHCCC-----------CCCCCCEEEECSSCCC--CHHHHHHHEEEEEEC--CCH
T ss_pred hhcCCCCCCccccchHHHHHHHHHHHhccccccccccccccccCCCcEEEEecCCcccCCHHHhCCCCCceeEeC--cCH
Confidence 0 122456889999986531 1234589999999999999999999999999984 699
Q ss_pred HHHHHHHHHhhchhcchhHHHHHhHhccCCCCHHHHH
Q 035603 339 EAFKVLAKNYLEIESHELFHEIGSLLGETDITPADVA 375 (431)
Q Consensus 339 ~~r~~i~~~~l~~~~~~~~~~i~~l~~~~~~s~adI~ 375 (431)
++|..|++.++.... .....+..++. +|++++|.
T Consensus 188 ~~r~~Il~~~~~~~~-~~~~~l~~~~~--~~~~~~l~ 221 (293)
T 3t15_A 188 EDRIGVCTGIFRTDN-VPAEDVVKIVD--NFPGQSID 221 (293)
T ss_dssp HHHHHHHHHHHGGGC-CCHHHHHHHHH--HSCSCCHH
T ss_pred HHHHHHHHHhccCCC-CCHHHHHHHhC--CCCcccHH
Confidence 999999998886432 22444555554 66776664
No 29
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=99.84 E-value=6.3e-21 Score=209.93 Aligned_cols=190 Identities=22% Similarity=0.256 Sum_probs=156.0
Q ss_pred CCCCccccccChhhHHHHHHHHHHHHhCHHHHHHhCCCCCceeEEeCCCCCcHHHHHHHHHHHcCCCeEEecccCcC---
Q 035603 188 HPATFDTLAMASKKKEAIKKDLIKFTEGKEYYAKIGKAWKRGYLLFGPPGTGKSTMIAAMANCLNYDVYDLELTSVE--- 264 (431)
Q Consensus 188 ~p~~f~~l~g~~~~k~~i~~~l~~~~~~~~~~~~~g~~~~rg~LL~GPPGtGKTsla~aiA~~l~~~i~~l~~~~~~--- 264 (431)
++.+|++|+|.+++++.|.+.+..++.+++.|..+++..++++||+||||||||+++++||++++.+++.+++.++.
T Consensus 199 ~~v~~~di~G~~~~~~~l~e~i~~~l~~~~~~~~l~i~~~~~vLL~Gp~GtGKTtLarala~~l~~~~i~v~~~~l~~~~ 278 (806)
T 1ypw_A 199 NEVGYDDVGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKL 278 (806)
T ss_dssp SSCCGGGCCSCSGGGGHHHHHHHHHHHCGGGGTSSCCCCCCEEEECSCTTSSHHHHHHHHHHTTTCEEEEEEHHHHSSSS
T ss_pred CCCCHHHhCChHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCeEEEECcCCCCHHHHHHHHHHHcCCcEEEEEchHhhhhh
Confidence 35789999999999999999999999999999999999999999999999999999999999999999999876542
Q ss_pred ---ChHHHHHHHHHhhhc---------------------ccchhhHHHHHHHHhcCcccCCCCceEEEEecCCCCCCChh
Q 035603 265 ---NNNELRSLLVDISSK---------------------KKKSNVTLSGLLNCIGGLWSTCGGERIIVFTTNHVDKLDPA 320 (431)
Q Consensus 265 ---~~~~l~~l~~~~~~~---------------------~~~~~~~~s~lL~~ldg~~~~~~~~~ivI~TTN~~~~Ld~A 320 (431)
....+..+|..+... ..........|+..++|.... ..+++|+|||+++.||++
T Consensus 279 ~g~~~~~l~~vf~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~~~~~Ll~ll~g~~~~--~~v~vI~atn~~~~ld~a 356 (806)
T 1ypw_A 279 AGESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQR--AHVIVMAATNRPNSIDPA 356 (806)
T ss_dssp TTHHHHHHHHHHHHHHHHCSEEEEEESGGGTSCTTSCCCSHHHHHHHHHHHHHHHSSCTT--SCCEEEEECSCTTTSCTT
T ss_pred hhhHHHHHHHHHHHHHhcCCcEEEeccHHHhhhccccccchHHHHHHHHHHHHhhhhccc--ccEEEecccCCchhcCHH
Confidence 234567777665433 111245778899999998654 459999999999999999
Q ss_pred hhccCceeEEEEcCCCCHHHHHHHHHHhhchhcchhHHHHHhHhc-cCCCCHHHHHHHhc
Q 035603 321 LIRRGRMDKHIEMPYCCFEAFKVLAKNYLEIESHELFHEIGSLLG-ETDITPADVAENLM 379 (431)
Q Consensus 321 llRpGRfd~~I~~~~p~~~~r~~i~~~~l~~~~~~~~~~i~~l~~-~~~~s~adI~~~l~ 379 (431)
+.|+|||+..|.++.|+.++|..+++.+..........++..++. ..|++++++..++.
T Consensus 357 l~r~gRf~~~i~i~~p~~~~r~~il~~~~~~~~l~~~~~l~~la~~t~g~~g~dl~~l~~ 416 (806)
T 1ypw_A 357 LRRFGRFDREVDIGIPDATGRLEILQIHTKNMKLADDVDLEQVANETHGHVGADLAALCS 416 (806)
T ss_dssp TTSTTSSCEEECCCCCCHHHHHHHHHHTTTTSCCCTTCCTHHHHHSCSSCCHHHHHHHHH
T ss_pred HhcccccccccccCCCCHHHHHHHHHHHHhcCCCcccchhHHHHHhhcCcchHHHHHHHH
Confidence 999999999999999999999999998875432222223445555 34999999986654
No 30
>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E*
Probab=99.79 E-value=8.9e-20 Score=186.80 Aligned_cols=149 Identities=16% Similarity=0.142 Sum_probs=65.7
Q ss_pred cccccChhhHHHHHHHHHHHHhCHHHHHHhCC-CCCceeEEeCCCCCcHHHHHHHHHHHcCCCeEEecccCcC-------
Q 035603 193 DTLAMASKKKEAIKKDLIKFTEGKEYYAKIGK-AWKRGYLLFGPPGTGKSTMIAAMANCLNYDVYDLELTSVE------- 264 (431)
Q Consensus 193 ~~l~g~~~~k~~i~~~l~~~~~~~~~~~~~g~-~~~rg~LL~GPPGtGKTsla~aiA~~l~~~i~~l~~~~~~------- 264 (431)
+.|+|.+++|+.|...+..+......+...+. .+++++||+||||||||++|+++|+.++.+++.++++.+.
T Consensus 15 ~~IvGqe~ak~~l~~av~~~~~r~~~~~~~~~~~~~~~iLl~GppGtGKT~lar~lA~~l~~~~~~v~~~~~~~~g~vG~ 94 (444)
T 1g41_A 15 QHIIGQADAKRAVAIALRNRWRRMQLQEPLRHEVTPKNILMIGPTGVGKTEIARRLAKLANAPFIKVEATKFTEVGYVGK 94 (444)
T ss_dssp TTCCSCHHHHHHHHHHHHHHHHHHHSCTTTTTTCCCCCEEEECCTTSSHHHHHHHHHHHTTCCEEEEEGGGGC----CCC
T ss_pred HHhCCHHHHHHHHHHHHHHHHhhhccccccccccCCceEEEEcCCCCCHHHHHHHHHHHcCCCceeecchhhcccceeec
Confidence 36899999999998888776655544443333 3568999999999999999999999999999999876542
Q ss_pred -ChHHHHHHHHHhhhc--------------ccchhhHHHHHHHHhcCcccCCCCceEEEEe-cCCCCCCChhhhccCcee
Q 035603 265 -NNNELRSLLVDISSK--------------KKKSNVTLSGLLNCIGGLWSTCGGERIIVFT-TNHVDKLDPALIRRGRMD 328 (431)
Q Consensus 265 -~~~~l~~l~~~~~~~--------------~~~~~~~~s~lL~~ldg~~~~~~~~~ivI~T-TN~~~~Ld~AllRpGRfd 328 (431)
....++.+|..+... .......+++||+.|||+.+.. .+ +++ ||+++.|||||+||||||
T Consensus 95 d~e~~lr~lf~~a~~~~~~De~d~~~~~~~~~~e~rvl~~LL~~~dg~~~~~---~v-~a~~TN~~~~ld~aL~rggr~D 170 (444)
T 1g41_A 95 EVDSIIRDLTDSAMKLVRQQEIAKNRARAEDVAEERILDALLPPAKNQWGEV---EN-HDSHSSTRQAFRKKLREGQLDD 170 (444)
T ss_dssp CTHHHHHHHHHHHHHHHHHHHHHSCC------------------------------------------------------
T ss_pred cHHHHHHHHHHHHHhcchhhhhhhhhccchhhHHHHHHHHHHHHhhcccccc---cc-ccccccCHHHHHHHHHcCCCcc
Confidence 244566666554321 3345688999999999996532 23 444 999999999999999999
Q ss_pred EEEEcCCCCHH-HHHHHH
Q 035603 329 KHIEMPYCCFE-AFKVLA 345 (431)
Q Consensus 329 ~~I~~~~p~~~-~r~~i~ 345 (431)
++|+++.|+.. .+.+|+
T Consensus 171 ~~i~i~lP~~~~~~~ei~ 188 (444)
T 1g41_A 171 KEIEIDVSAGVSMGVEIM 188 (444)
T ss_dssp ------------------
T ss_pred eEEEEcCCCCccchhhhh
Confidence 99999999987 555553
No 31
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=99.71 E-value=8.2e-19 Score=181.45 Aligned_cols=175 Identities=16% Similarity=0.097 Sum_probs=114.0
Q ss_pred CCCCccccccChhhHHHHHHHHHHHHhCHHHHHHhCCCCCceeEEeCCCCCcHHHHHHHHHHHcC--CCeEEecccCcC-
Q 035603 188 HPATFDTLAMASKKKEAIKKDLIKFTEGKEYYAKIGKAWKRGYLLFGPPGTGKSTMIAAMANCLN--YDVYDLELTSVE- 264 (431)
Q Consensus 188 ~p~~f~~l~g~~~~k~~i~~~l~~~~~~~~~~~~~g~~~~rg~LL~GPPGtGKTsla~aiA~~l~--~~i~~l~~~~~~- 264 (431)
+...|++|+|.+++++.+...+..+. .|..+++++|||||||||||++|+++|++++ .+++.++++.+.
T Consensus 32 ~~~~~~~iiG~~~~~~~l~~~~~~~~--------~~~~~~~~iLl~GppGtGKT~la~ala~~l~~~~~~~~~~~~~~~~ 103 (456)
T 2c9o_A 32 AKQAASGLVGQENAREACGVIVELIK--------SKKMAGRAVLLAGPPGTGKTALALAIAQELGSKVPFCPMVGSEVYS 103 (456)
T ss_dssp BCSEETTEESCHHHHHHHHHHHHHHH--------TTCCTTCEEEEECCTTSSHHHHHHHHHHHHCTTSCEEEEEGGGGCC
T ss_pred hhhchhhccCHHHHHHHHHHHHHHHH--------hCCCCCCeEEEECCCcCCHHHHHHHHHHHhCCCceEEEEeHHHHHH
Confidence 34568999999999999877654332 3666779999999999999999999999999 899999988763
Q ss_pred ----ChHHHHHHHHHhh---hc---------------ccc-------------------------hhhHHHHHHHHhcCc
Q 035603 265 ----NNNELRSLLVDIS---SK---------------KKK-------------------------SNVTLSGLLNCIGGL 297 (431)
Q Consensus 265 ----~~~~l~~l~~~~~---~~---------------~~~-------------------------~~~~~s~lL~~ldg~ 297 (431)
....+.++|..+. .. ... .....+.++..++..
T Consensus 104 ~~~~~~~~~~~~f~~a~~~~~~~~~il~iDEid~l~~~r~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ll~~l~~~ 183 (456)
T 2c9o_A 104 TEIKKTEVLMENFRRAIGLRIKETKEVYEGEVTELTPCETENPMGGYGKTISHVIIGLKTAKGTKQLKLDPSIFESLQKE 183 (456)
T ss_dssp SSSCHHHHHHHHHHHTEEEEEEEEEEEEEEEEEEEEEC--------------CEEEEEEETTEEEEEEECHHHHHHHHHT
T ss_pred HhhhhhHHHHHHHHHHHhhhhcCCcEEEEechhhcccccCCCCCCCcchHHHHHHHHHhccccchhHhhhHHHHHHHhhc
Confidence 2234778887762 11 000 001223466666532
Q ss_pred ccCCCCceEEEEecCCCCCCChhhhccCceeE--EEEcCCCC--HHHHHHHHHHhhchhcchhHHHHHhHhccC-CCCHH
Q 035603 298 WSTCGGERIIVFTTNHVDKLDPALIRRGRMDK--HIEMPYCC--FEAFKVLAKNYLEIESHELFHEIGSLLGET-DITPA 372 (431)
Q Consensus 298 ~~~~~~~~ivI~TTN~~~~Ld~AllRpGRfd~--~I~~~~p~--~~~r~~i~~~~l~~~~~~~~~~i~~l~~~~-~~s~a 372 (431)
....++.++|++|||+++.+|+++.||||||. .+.+|.|+ .++|+++++.+.. .++..++..+ | ++
T Consensus 184 ~~~~~~~v~i~attn~~~~ld~a~~r~~rfd~~~~~~v~~p~~~~~~R~~il~~~~~-------~dl~~~a~~t~g--ga 254 (456)
T 2c9o_A 184 RVEAGDVIYIEANSGAVKRQGRCDTYATEFDLEAEEYVPLPKGDVHKKKEIIQDVTL-------HDLDVANARPQG--GQ 254 (456)
T ss_dssp TCCTTEEEEEETTTCCEEEEEEETTSCCTTSCSSSSEECCCCSCSEEEEEEEEEEEH-------HHHHHTC---------
T ss_pred cCCCCCEEEEEcCCCCcccCChhhcCCcccCcceeEecCCCchhHHHHHHHHHHHHH-------HHHHHHHHhCCC--hh
Confidence 22344556667999999999999999999999 56667774 4667766554431 2456666543 6 88
Q ss_pred HHHHHhc
Q 035603 373 DVAENLM 379 (431)
Q Consensus 373 dI~~~l~ 379 (431)
|+..++.
T Consensus 255 dl~~l~~ 261 (456)
T 2c9o_A 255 DILSMMG 261 (456)
T ss_dssp -------
T ss_pred HHHHHHh
Confidence 9887774
No 32
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=99.71 E-value=5.3e-16 Score=153.35 Aligned_cols=188 Identities=13% Similarity=0.128 Sum_probs=134.6
Q ss_pred CcceeeeccCCCCccccccChhhHHHHHHHHHHHHhCHHHHHHhCCCCCceeEEeCCCCCcHHHHHHHHHHHcCCCeEEe
Q 035603 179 KKWSHVYFEHPATFDTLAMASKKKEAIKKDLIKFTEGKEYYAKIGKAWKRGYLLFGPPGTGKSTMIAAMANCLNYDVYDL 258 (431)
Q Consensus 179 ~~w~~~~~~~p~~f~~l~g~~~~k~~i~~~l~~~~~~~~~~~~~g~~~~rg~LL~GPPGtGKTsla~aiA~~l~~~i~~l 258 (431)
..|. ..-.|.+|++++|.+.+++.+...+...... .....++||+||||||||++|+++|+.++.+++.+
T Consensus 17 ~~~~--~~~~p~~~~~iiG~~~~~~~l~~~l~~~~~~--------~~~~~~vll~G~~GtGKT~la~~ia~~~~~~~~~~ 86 (338)
T 3pfi_A 17 ETYE--TSLRPSNFDGYIGQESIKKNLNVFIAAAKKR--------NECLDHILFSGPAGLGKTTLANIISYEMSANIKTT 86 (338)
T ss_dssp --------CCCCSGGGCCSCHHHHHHHHHHHHHHHHT--------TSCCCCEEEECSTTSSHHHHHHHHHHHTTCCEEEE
T ss_pred hhhh--hccCCCCHHHhCChHHHHHHHHHHHHHHHhc--------CCCCCeEEEECcCCCCHHHHHHHHHHHhCCCeEEe
Confidence 3565 4457889999999999999988877655431 23456899999999999999999999999999999
Q ss_pred cccCcCChHHHHHHHHHhhhc--------ccchhhHHHHHHHHhcCccc--------------CCCCceEEEEecCCCCC
Q 035603 259 ELTSVENNNELRSLLVDISSK--------KKKSNVTLSGLLNCIGGLWS--------------TCGGERIIVFTTNHVDK 316 (431)
Q Consensus 259 ~~~~~~~~~~l~~l~~~~~~~--------~~~~~~~~s~lL~~ldg~~~--------------~~~~~~ivI~TTN~~~~ 316 (431)
++..+.....+...+...... +.........|+..++.... .....+++|++||....
T Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~vl~lDEi~~l~~~~~~~Ll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~atn~~~~ 166 (338)
T 3pfi_A 87 AAPMIEKSGDLAAILTNLSEGDILFIDEIHRLSPAIEEVLYPAMEDYRLDIIIGSGPAAQTIKIDLPKFTLIGATTRAGM 166 (338)
T ss_dssp EGGGCCSHHHHHHHHHTCCTTCEEEEETGGGCCHHHHHHHHHHHHTSCC---------CCCCCCCCCCCEEEEEESCGGG
T ss_pred cchhccchhHHHHHHHhccCCCEEEEechhhcCHHHHHHHHHHHHhccchhhcccCccccceecCCCCeEEEEeCCCccc
Confidence 998887777777777653332 23335566777777765320 00113789999999999
Q ss_pred CChhhhccCceeEEEEcCCCCHHHHHHHHHHhhchhcchh-HHHHHhHhccCCCCHHHHHHHh
Q 035603 317 LDPALIRRGRMDKHIEMPYCCFEAFKVLAKNYLEIESHEL-FHEIGSLLGETDITPADVAENL 378 (431)
Q Consensus 317 Ld~AllRpGRfd~~I~~~~p~~~~r~~i~~~~l~~~~~~~-~~~i~~l~~~~~~s~adI~~~l 378 (431)
++++|++ ||+..|+++.|+.+++..+++.+........ .+.+..++...+-++.++.+.+
T Consensus 167 l~~~L~~--R~~~~i~l~~~~~~e~~~il~~~~~~~~~~~~~~~~~~l~~~~~G~~r~l~~~l 227 (338)
T 3pfi_A 167 LSNPLRD--RFGMQFRLEFYKDSELALILQKAALKLNKTCEEKAALEIAKRSRSTPRIALRLL 227 (338)
T ss_dssp SCHHHHT--TCSEEEECCCCCHHHHHHHHHHHHHHTTCEECHHHHHHHHHTTTTCHHHHHHHH
T ss_pred cCHHHHh--hcCEEeeCCCcCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHCcCHHHHHHHH
Confidence 9999999 9999999999999999999998876433222 2233444443344555555443
No 33
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=99.66 E-value=1.2e-15 Score=148.58 Aligned_cols=152 Identities=18% Similarity=0.235 Sum_probs=118.9
Q ss_pred ccccChhhHHHHHHHHHHHHhCHHHHHHhCCCCCc---eeEEeCCCCCcHHHHHHHHHHHcC-------CCeEEecccCc
Q 035603 194 TLAMASKKKEAIKKDLIKFTEGKEYYAKIGKAWKR---GYLLFGPPGTGKSTMIAAMANCLN-------YDVYDLELTSV 263 (431)
Q Consensus 194 ~l~g~~~~k~~i~~~l~~~~~~~~~~~~~g~~~~r---g~LL~GPPGtGKTsla~aiA~~l~-------~~i~~l~~~~~ 263 (431)
+|+|.+++|+.|.+.+..+.. +..+.+.|+..++ ++||+||||||||++|+++|+.++ .+++.+++..+
T Consensus 32 ~i~G~~~~~~~l~~~~~~~~~-~~~~~~~g~~~~~~~~~vll~G~~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~l 110 (309)
T 3syl_A 32 ELIGLKPVKDRIRETAALLLV-ERARQKLGLAHETPTLHMSFTGNPGTGKTTVALKMAGLLHRLGYVRKGHLVSVTRDDL 110 (309)
T ss_dssp HSSSCHHHHHHHHHHHHHHHH-HHHHHHHTCCSSCCCCEEEEEECTTSSHHHHHHHHHHHHHHTTSSSSCCEEEECGGGT
T ss_pred HccChHHHHHHHHHHHHHHHh-HHHHHHcCCCCCCCCceEEEECCCCCCHHHHHHHHHHHHHhcCCcCCCcEEEEcHHHh
Confidence 689999999999988877654 6777777866543 599999999999999999999884 37888888766
Q ss_pred CC------hHHHHHHHHHhhhc-------c---------cchhhHHHHHHHHhcCcccCCCCceEEEEecCCCC-----C
Q 035603 264 EN------NNELRSLLVDISSK-------K---------KKSNVTLSGLLNCIGGLWSTCGGERIIVFTTNHVD-----K 316 (431)
Q Consensus 264 ~~------~~~l~~l~~~~~~~-------~---------~~~~~~~s~lL~~ldg~~~~~~~~~ivI~TTN~~~-----~ 316 (431)
.. ...+..+|..+... + ......++.|++.++.. ..++++|+|||..+ .
T Consensus 111 ~~~~~g~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~Ll~~l~~~----~~~~~~i~~~~~~~~~~~~~ 186 (309)
T 3syl_A 111 VGQYIGHTAPKTKEVLKRAMGGVLFIDEAYYLYRPDNERDYGQEAIEILLQVMENN----RDDLVVILAGYADRMENFFQ 186 (309)
T ss_dssp CCSSTTCHHHHHHHHHHHHTTSEEEEETGGGSCCCC---CCTHHHHHHHHHHHHHC----TTTCEEEEEECHHHHHHHHH
T ss_pred hhhcccccHHHHHHHHHhcCCCEEEEEChhhhccCCCcccccHHHHHHHHHHHhcC----CCCEEEEEeCChHHHHHHHh
Confidence 22 34456666655433 1 22566778899988853 34588999998654 3
Q ss_pred CChhhhccCceeEEEEcCCCCHHHHHHHHHHhhchh
Q 035603 317 LDPALIRRGRMDKHIEMPYCCFEAFKVLAKNYLEIE 352 (431)
Q Consensus 317 Ld~AllRpGRfd~~I~~~~p~~~~r~~i~~~~l~~~ 352 (431)
++|+|++ ||+.+|+|+.|+.+++..|++.++...
T Consensus 187 ~~~~l~~--R~~~~i~~~~~~~~~~~~il~~~l~~~ 220 (309)
T 3syl_A 187 SNPGFRS--RIAHHIEFPDYSDEELFEIAGHMLDDQ 220 (309)
T ss_dssp HSTTHHH--HEEEEEEECCCCHHHHHHHHHHHHHHT
T ss_pred hCHHHHH--hCCeEEEcCCcCHHHHHHHHHHHHHHc
Confidence 6899999 999999999999999999999998653
No 34
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=99.63 E-value=4.1e-15 Score=145.68 Aligned_cols=181 Identities=15% Similarity=0.141 Sum_probs=131.4
Q ss_pred CCCCccccccChhhHHHHHHHHHHHHhCHHHHHHhCCCCCceeEEeCCCCCcHHHHHHHHHHHcCCCeEEecccCcCChH
Q 035603 188 HPATFDTLAMASKKKEAIKKDLIKFTEGKEYYAKIGKAWKRGYLLFGPPGTGKSTMIAAMANCLNYDVYDLELTSVENNN 267 (431)
Q Consensus 188 ~p~~f~~l~g~~~~k~~i~~~l~~~~~~~~~~~~~g~~~~rg~LL~GPPGtGKTsla~aiA~~l~~~i~~l~~~~~~~~~ 267 (431)
.|.+|++++|.+..++.+.+.+...... + ..++++||+||||||||++|+++|+.++.+++.++++.+....
T Consensus 7 ~p~~~~~~ig~~~~~~~l~~~l~~~~~~-------~-~~~~~vll~G~~GtGKT~la~~i~~~~~~~~~~~~~~~~~~~~ 78 (324)
T 1hqc_A 7 RPKTLDEYIGQERLKQKLRVYLEAAKAR-------K-EPLEHLLLFGPPGLGKTTLAHVIAHELGVNLRVTSGPAIEKPG 78 (324)
T ss_dssp CCCSTTTCCSCHHHHHHHHHHHHHHHHH-------C-SCCCCCEEECCTTCCCHHHHHHHHHHHTCCEEEECTTTCCSHH
T ss_pred CcccHHHhhCHHHHHHHHHHHHHHHHcc-------C-CCCCcEEEECCCCCCHHHHHHHHHHHhCCCEEEEeccccCChH
Confidence 6789999999999999888776554321 1 2356899999999999999999999999999999998887777
Q ss_pred HHHHHHHH-hhhc--------ccchhhHHHHHHHHhcCccc-----C---------CCCceEEEEecCCCCCCChhhhcc
Q 035603 268 ELRSLLVD-ISSK--------KKKSNVTLSGLLNCIGGLWS-----T---------CGGERIIVFTTNHVDKLDPALIRR 324 (431)
Q Consensus 268 ~l~~l~~~-~~~~--------~~~~~~~~s~lL~~ldg~~~-----~---------~~~~~ivI~TTN~~~~Ld~AllRp 324 (431)
++...+.. .... +.........|+..++.... . ....+++|+|||.++.++++|.+
T Consensus 79 ~l~~~l~~~~~~~~~l~lDEi~~l~~~~~~~L~~~l~~~~~~~v~~~~~~~~~~~~~~~~~~~i~~t~~~~~~~~~l~~- 157 (324)
T 1hqc_A 79 DLAAILANSLEEGDILFIDEIHRLSRQAEEHLYPAMEDFVMDIVIGQGPAARTIRLELPRFTLIGATTRPGLITAPLLS- 157 (324)
T ss_dssp HHHHHHTTTCCTTCEEEETTTTSCCHHHHHHHHHHHHHSEEEECCSSSSSCCCEEEECCCCEEEEEESCCSSCSCSTTT-
T ss_pred HHHHHHHHhccCCCEEEEECCcccccchHHHHHHHHHhhhhHHhccccccccccccCCCCEEEEEeCCCcccCCHHHHh-
Confidence 77776655 1111 22233455667776654210 0 01247899999999999999998
Q ss_pred CceeEEEEcCCCCHHHHHHHHHHhhchhcchh-HHHHHhHhccCCCCHHHHHHHh
Q 035603 325 GRMDKHIEMPYCCFEAFKVLAKNYLEIESHEL-FHEIGSLLGETDITPADVAENL 378 (431)
Q Consensus 325 GRfd~~I~~~~p~~~~r~~i~~~~l~~~~~~~-~~~i~~l~~~~~~s~adI~~~l 378 (431)
||+..+.++.|+.+++..+++.+........ .+.+..++...+-.|.++.+++
T Consensus 158 -R~~~~i~l~~~~~~e~~~~l~~~~~~~~~~~~~~~~~~l~~~~~G~~r~l~~~l 211 (324)
T 1hqc_A 158 -RFGIVEHLEYYTPEELAQGVMRDARLLGVRITEEAALEIGRRSRGTMRVAKRLF 211 (324)
T ss_dssp -TCSCEEECCCCCHHHHHHHHHHHHHTTTCCCCHHHHHHHHHHSCSCHHHHHHHH
T ss_pred -cccEEEecCCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHccCCHHHHHHHH
Confidence 9999999999999999999998875432222 2334455544444677776654
No 35
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=99.63 E-value=4.2e-15 Score=146.08 Aligned_cols=149 Identities=19% Similarity=0.165 Sum_probs=114.6
Q ss_pred CcceeeeccCCCCccccccChhhHHHHHHHHHHHHhCHHHHHHhCCCCCceeEEeCCCCCcHHHHHHHHHHHcCCCeEEe
Q 035603 179 KKWSHVYFEHPATFDTLAMASKKKEAIKKDLIKFTEGKEYYAKIGKAWKRGYLLFGPPGTGKSTMIAAMANCLNYDVYDL 258 (431)
Q Consensus 179 ~~w~~~~~~~p~~f~~l~g~~~~k~~i~~~l~~~~~~~~~~~~~g~~~~rg~LL~GPPGtGKTsla~aiA~~l~~~i~~l 258 (431)
..|. ..-.|.+|++++|.+++++.|.+.+. ....+..+|++||||||||++++++|++++.+++.+
T Consensus 14 ~~~~--~k~rP~~~~~ivg~~~~~~~l~~~l~------------~~~~~~~~L~~G~~G~GKT~la~~la~~l~~~~~~i 79 (324)
T 3u61_B 14 HILE--QKYRPSTIDECILPAFDKETFKSITS------------KGKIPHIILHSPSPGTGKTTVAKALCHDVNADMMFV 79 (324)
T ss_dssp SSHH--HHSCCCSTTTSCCCHHHHHHHHHHHH------------TTCCCSEEEECSSTTSSHHHHHHHHHHHTTEEEEEE
T ss_pred chHH--HhhCCCCHHHHhCcHHHHHHHHHHHH------------cCCCCeEEEeeCcCCCCHHHHHHHHHHHhCCCEEEE
Confidence 3565 45678999999999999888776554 123456789999999999999999999999999999
Q ss_pred cccCcCChHHHHHHHHHhhhc---------------ccch-hhHHHHHHHHhcCcccCCCCceEEEEecCCCCCCChhhh
Q 035603 259 ELTSVENNNELRSLLVDISSK---------------KKKS-NVTLSGLLNCIGGLWSTCGGERIIVFTTNHVDKLDPALI 322 (431)
Q Consensus 259 ~~~~~~~~~~l~~l~~~~~~~---------------~~~~-~~~~s~lL~~ldg~~~~~~~~~ivI~TTN~~~~Ld~All 322 (431)
+++... .+.++..+...... +... ......|+..++... ..+.+|+|||.+..++++|.
T Consensus 80 ~~~~~~-~~~i~~~~~~~~~~~~~~~~~~vliiDEi~~l~~~~~~~~L~~~le~~~----~~~~iI~~~n~~~~l~~~l~ 154 (324)
T 3u61_B 80 NGSDCK-IDFVRGPLTNFASAASFDGRQKVIVIDEFDRSGLAESQRHLRSFMEAYS----SNCSIIITANNIDGIIKPLQ 154 (324)
T ss_dssp ETTTCC-HHHHHTHHHHHHHBCCCSSCEEEEEEESCCCGGGHHHHHHHHHHHHHHG----GGCEEEEEESSGGGSCTTHH
T ss_pred cccccC-HHHHHHHHHHHHhhcccCCCCeEEEEECCcccCcHHHHHHHHHHHHhCC----CCcEEEEEeCCccccCHHHH
Confidence 988754 55666655443221 2233 556677888877542 34789999999999999999
Q ss_pred ccCceeEEEEcCCCCHHHHHHHHHHhh
Q 035603 323 RRGRMDKHIEMPYCCFEAFKVLAKNYL 349 (431)
Q Consensus 323 RpGRfd~~I~~~~p~~~~r~~i~~~~l 349 (431)
+ |+. .++|+.|+.+++..+++.++
T Consensus 155 s--R~~-~i~~~~~~~~e~~~il~~~~ 178 (324)
T 3u61_B 155 S--RCR-VITFGQPTDEDKIEMMKQMI 178 (324)
T ss_dssp H--HSE-EEECCCCCHHHHHHHHHHHH
T ss_pred h--hCc-EEEeCCCCHHHHHHHHHHHH
Confidence 9 775 69999999999887776654
No 36
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=99.59 E-value=8.7e-15 Score=142.01 Aligned_cols=155 Identities=15% Similarity=0.187 Sum_probs=108.5
Q ss_pred cccccChhhHHHHHHHHHHHHhCHHHHHHh-CCCCCceeEEeCCCCCcHHHHHHHHHHHcCCCeEEecccCcCC------
Q 035603 193 DTLAMASKKKEAIKKDLIKFTEGKEYYAKI-GKAWKRGYLLFGPPGTGKSTMIAAMANCLNYDVYDLELTSVEN------ 265 (431)
Q Consensus 193 ~~l~g~~~~k~~i~~~l~~~~~~~~~~~~~-g~~~~rg~LL~GPPGtGKTsla~aiA~~l~~~i~~l~~~~~~~------ 265 (431)
+.|+|.+++++.|...+............. +...+.++||+||||||||++|+++|+.++.+++.++++.+..
T Consensus 15 ~~i~G~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~l~~~~~~i~~~~~~~~~~~~~ 94 (310)
T 1ofh_A 15 QHIIGQADAKRAVAIALRNRWRRMQLQEPLRHEVTPKNILMIGPTGVGKTEIARRLAKLANAPFIKVEATKFTEVGYVGK 94 (310)
T ss_dssp TTCCSCHHHHHHHHHHHHHHHHTTSSCHHHHHHCCCCCEEEECCTTSSHHHHHHHHHHHHTCCEEEEEGGGGSSCCSGGG
T ss_pred hhcCChHHHHHHHHHHHHHHHhhhhhcccccccCCCceEEEECCCCCCHHHHHHHHHHHhCCCEEEEcchhcccCCccCc
Confidence 358999999999988776643321110000 1124578999999999999999999999999999998876532
Q ss_pred --hHHHHHHHHHhh--------hc----ccch---------------hhHHHHHHHHhcCccc------CCCCceEEEEe
Q 035603 266 --NNELRSLLVDIS--------SK----KKKS---------------NVTLSGLLNCIGGLWS------TCGGERIIVFT 310 (431)
Q Consensus 266 --~~~l~~l~~~~~--------~~----~~~~---------------~~~~s~lL~~ldg~~~------~~~~~~ivI~T 310 (431)
...+..++.... .. ++.. ....+.|+..+++... .....+++|+|
T Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~~~vl~iDEi~~l~~~~~~~~~~~~~~~~~~~Ll~~le~~~~~~~~~~~~~~~~~~i~~ 174 (310)
T 1ofh_A 95 EVDSIIRDLTDSAGGAIDAVEQNGIVFIDEIDKICKKGEYSGADVSREGVQRDLLPLVEGSTVSTKHGMVKTDHILFIAS 174 (310)
T ss_dssp STTHHHHHHHHTTTTCHHHHHHHCEEEEECGGGGSCCSSCCSSHHHHHHHHHHHHHHHHCCEEEETTEEEECTTCEEEEE
T ss_pred cHHHHHHHHHHHhhHHHhhccCCCEEEEEChhhcCccccccccchhHHHHHHHHHHHhcCCeEecccccccCCcEEEEEc
Confidence 234566554321 11 1110 1126778888886421 01234788888
Q ss_pred ----cCCCCCCChhhhccCceeEEEEcCCCCHHHHHHHHHHhh
Q 035603 311 ----TNHVDKLDPALIRRGRMDKHIEMPYCCFEAFKVLAKNYL 349 (431)
Q Consensus 311 ----TN~~~~Ld~AllRpGRfd~~I~~~~p~~~~r~~i~~~~l 349 (431)
++.+..++|+|++ ||+..|+|++|+.+++..|++...
T Consensus 175 ~~~~~~~~~~l~~~l~~--R~~~~i~~~~~~~~~~~~il~~~~ 215 (310)
T 1ofh_A 175 GAFQVARPSDLIPELQG--RLPIRVELTALSAADFERILTEPH 215 (310)
T ss_dssp ECCSSSCGGGSCHHHHH--TCCEEEECCCCCHHHHHHHHHSST
T ss_pred CCcccCCcccCCHHHHh--hCCceEEcCCcCHHHHHHHHHhhH
Confidence 5688899999998 999999999999999999998643
No 37
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=99.57 E-value=3.1e-14 Score=142.04 Aligned_cols=176 Identities=16% Similarity=0.088 Sum_probs=115.0
Q ss_pred CCccccccChhhHHHHHHHHHHHHhCHHHHHHhCCCCCceeEEeCCCCCcHHHHHHHHHHHcCC--CeEEecccCcC---
Q 035603 190 ATFDTLAMASKKKEAIKKDLIKFTEGKEYYAKIGKAWKRGYLLFGPPGTGKSTMIAAMANCLNY--DVYDLELTSVE--- 264 (431)
Q Consensus 190 ~~f~~l~g~~~~k~~i~~~l~~~~~~~~~~~~~g~~~~rg~LL~GPPGtGKTsla~aiA~~l~~--~i~~l~~~~~~--- 264 (431)
.+|++++|.+..++.+........ .|...++++||+||||||||++|+++|+.++. +++.+++..+.
T Consensus 41 ~~~~~ivG~~~~~~~l~~l~~~~~--------~~~~~~~~vLl~GppGtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~ 112 (368)
T 3uk6_A 41 QASQGMVGQLAARRAAGVVLEMIR--------EGKIAGRAVLIAGQPGTGKTAIAMGMAQALGPDTPFTAIAGSEIFSLE 112 (368)
T ss_dssp SEETTEESCHHHHHHHHHHHHHHH--------TTCCTTCEEEEEESTTSSHHHHHHHHHHHHCSSCCEEEEEGGGGSCSS
T ss_pred cchhhccChHHHHHHHHHHHHHHH--------cCCCCCCEEEEECCCCCCHHHHHHHHHHHhcccCCcccccchhhhhcc
Confidence 449999999999888654333222 24455689999999999999999999999985 56666543310
Q ss_pred -----------------------------------------------C-----hHHHHHHHHHhhhc-------------
Q 035603 265 -----------------------------------------------N-----NNELRSLLVDISSK------------- 279 (431)
Q Consensus 265 -----------------------------------------------~-----~~~l~~l~~~~~~~------------- 279 (431)
. ...++..+......
T Consensus 113 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ld~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~v 192 (368)
T 3uk6_A 113 MSKTEALTQAFRRSIGVRIKAGAVHTVSLHEIDVINSRTQGFLALFSGDTGEIKSEVREQINAKVAEWREEGKAEIIPGV 192 (368)
T ss_dssp SCHHHHHHHHHHHSBEECC------CEEHHHHHHHTC----CCSCC-------CHHHHHHHHHHHHHHHHHTC---CBCE
T ss_pred cchhHHHHHHHHHHHHHHhhhhccccccHhhhhhhhcccccchhhccCcccccHHHHHHHHHHHHHHhhhhccccccCce
Confidence 0 22344444332210
Q ss_pred ------ccchhhHHHHHHHHhcCcccCCCCceEEEEec-----------CCCCCCChhhhccCceeEEEEcCCCCHHHHH
Q 035603 280 ------KKKSNVTLSGLLNCIGGLWSTCGGERIIVFTT-----------NHVDKLDPALIRRGRMDKHIEMPYCCFEAFK 342 (431)
Q Consensus 280 ------~~~~~~~~s~lL~~ldg~~~~~~~~~ivI~TT-----------N~~~~Ld~AllRpGRfd~~I~~~~p~~~~r~ 342 (431)
+.......+.|+..++.. ...+++++|. |.++.+|++|++ ||.. |+|++|+.+++.
T Consensus 193 l~IDEi~~l~~~~~~~L~~~le~~----~~~~~ii~t~~~~~~i~~t~~~~~~~l~~~l~s--R~~~-i~~~~~~~~e~~ 265 (368)
T 3uk6_A 193 LFIDEVHMLDIESFSFLNRALESD----MAPVLIMATNRGITRIRGTSYQSPHGIPIDLLD--RLLI-VSTTPYSEKDTK 265 (368)
T ss_dssp EEEESGGGSBHHHHHHHHHHTTCT----TCCEEEEEESCSEEECBTSSCEEETTCCHHHHT--TEEE-EEECCCCHHHHH
T ss_pred EEEhhccccChHHHHHHHHHhhCc----CCCeeeeecccceeeeeccCCCCcccCCHHHHh--hccE-EEecCCCHHHHH
Confidence 222345566777777643 2235544443 358899999999 8976 899999999999
Q ss_pred HHHHHhhchhcchh-HHHHHhHhccCC-CCHHHHHHHhcc
Q 035603 343 VLAKNYLEIESHEL-FHEIGSLLGETD-ITPADVAENLMP 380 (431)
Q Consensus 343 ~i~~~~l~~~~~~~-~~~i~~l~~~~~-~s~adI~~~l~~ 380 (431)
.+++..+....... .+.+..++.... -+++++.+++..
T Consensus 266 ~il~~~~~~~~~~~~~~~l~~l~~~~~~G~~r~~~~ll~~ 305 (368)
T 3uk6_A 266 QILRIRCEEEDVEMSEDAYTVLTRIGLETSLRYAIQLITA 305 (368)
T ss_dssp HHHHHHHHHTTCCBCHHHHHHHHHHHHHSCHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHhcCCCHHHHHHHHHH
Confidence 99998876533322 223444444333 677777666543
No 38
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=99.57 E-value=1e-13 Score=126.64 Aligned_cols=146 Identities=16% Similarity=0.156 Sum_probs=106.9
Q ss_pred eccCCCCccccccChhhHHHHHHHHHHHHhCHHHHHHhCCCCCceeEEeCCCCCcHHHHHHHHHHHc-----CCCeEEec
Q 035603 185 YFEHPATFDTLAMASKKKEAIKKDLIKFTEGKEYYAKIGKAWKRGYLLFGPPGTGKSTMIAAMANCL-----NYDVYDLE 259 (431)
Q Consensus 185 ~~~~p~~f~~l~g~~~~k~~i~~~l~~~~~~~~~~~~~g~~~~rg~LL~GPPGtGKTsla~aiA~~l-----~~~i~~l~ 259 (431)
....|.+|++++|.++.++.|.+.+. . + ...++||+||||||||++++++++.+ ...++.++
T Consensus 9 ~~~~p~~~~~~~g~~~~~~~l~~~l~----~-------~--~~~~~ll~G~~G~GKT~l~~~l~~~~~~~~~~~~~~~~~ 75 (226)
T 2chg_A 9 EKYRPRTLDEVVGQDEVIQRLKGYVE----R-------K--NIPHLLFSGPPGTGKTATAIALARDLFGENWRDNFIEMN 75 (226)
T ss_dssp HHTSCSSGGGCCSCHHHHHHHHHHHH----T-------T--CCCCEEEECSTTSSHHHHHHHHHHHHHGGGGGGGEEEEE
T ss_pred HhcCCCCHHHHcCcHHHHHHHHHHHh----C-------C--CCCeEEEECCCCCCHHHHHHHHHHHHhccccccceEEec
Confidence 34578899999999988887766543 1 1 12359999999999999999999986 45577788
Q ss_pred ccCcCChHHHHHHHHHhhh-------c---------ccchhhHHHHHHHHhcCcccCCCCceEEEEecCCCCCCChhhhc
Q 035603 260 LTSVENNNELRSLLVDISS-------K---------KKKSNVTLSGLLNCIGGLWSTCGGERIIVFTTNHVDKLDPALIR 323 (431)
Q Consensus 260 ~~~~~~~~~l~~l~~~~~~-------~---------~~~~~~~~s~lL~~ldg~~~~~~~~~ivI~TTN~~~~Ld~AllR 323 (431)
+....+...+...+..... . +.........|+..++.. ...+.+|+|||.++.+++++.+
T Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vliiDe~~~l~~~~~~~l~~~l~~~----~~~~~~i~~~~~~~~~~~~l~~ 151 (226)
T 2chg_A 76 ASDERGIDVVRHKIKEFARTAPIGGAPFKIIFLDEADALTADAQAALRRTMEMY----SKSCRFILSCNYVSRIIEPIQS 151 (226)
T ss_dssp TTCTTCHHHHHHHHHHHHTSCCSTTCSCEEEEEETGGGSCHHHHHHHHHHHHHT----TTTEEEEEEESCGGGSCHHHHT
T ss_pred cccccChHHHHHHHHHHhcccCCCccCceEEEEeChhhcCHHHHHHHHHHHHhc----CCCCeEEEEeCChhhcCHHHHH
Confidence 7766555555554433221 1 222234556677776643 3347889999999999999999
Q ss_pred cCceeEEEEcCCCCHHHHHHHHHHhhc
Q 035603 324 RGRMDKHIEMPYCCFEAFKVLAKNYLE 350 (431)
Q Consensus 324 pGRfd~~I~~~~p~~~~r~~i~~~~l~ 350 (431)
|+. .++++.|+.++...++..++.
T Consensus 152 --r~~-~i~~~~~~~~~~~~~l~~~~~ 175 (226)
T 2chg_A 152 --RCA-VFRFKPVPKEAMKKRLLEICE 175 (226)
T ss_dssp --TSE-EEECCCCCHHHHHHHHHHHHH
T ss_pred --hCc-eeecCCCCHHHHHHHHHHHHH
Confidence 887 899999999999998887764
No 39
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=99.55 E-value=6e-14 Score=134.59 Aligned_cols=149 Identities=17% Similarity=0.186 Sum_probs=99.4
Q ss_pred cccccChhhHHHHHHHHHHHHhCHHHHHHhCCCCCceeEEeCCCCCcHHHHHHHHHHHcCCCeEEecccCcC---C----
Q 035603 193 DTLAMASKKKEAIKKDLIKFTEGKEYYAKIGKAWKRGYLLFGPPGTGKSTMIAAMANCLNYDVYDLELTSVE---N---- 265 (431)
Q Consensus 193 ~~l~g~~~~k~~i~~~l~~~~~~~~~~~~~g~~~~rg~LL~GPPGtGKTsla~aiA~~l~~~i~~l~~~~~~---~---- 265 (431)
+.+++.++..+.+......+. ..+...+...++++||+||||||||++|+++|+.++.+++.+++++.. .
T Consensus 33 ~~~i~~~~~~~~i~~~~~~l~---~~l~~~~~~~~~~vLl~G~~GtGKT~la~~ia~~~~~~~~~i~~~~~~~g~~~~~~ 109 (272)
T 1d2n_A 33 NGIIKWGDPVTRVLDDGELLV---QQTKNSDRTPLVSVLLEGPPHSGKTALAAKIAEESNFPFIKICSPDKMIGFSETAK 109 (272)
T ss_dssp TCCCCCSHHHHHHHHHHHHHH---HHHHHCSSCSEEEEEEECSTTSSHHHHHHHHHHHHTCSEEEEECGGGCTTCCHHHH
T ss_pred cCCCCccHHHHHHHHHHHHHH---HHHhccCCCCCeEEEEECCCCCcHHHHHHHHHHHhCCCEEEEeCHHHhcCCchHHH
Confidence 345666666566555422221 223344566778999999999999999999999999999998776421 1
Q ss_pred hHHHHHHHHHhhhc-------cc-------------chhhHHHHHHHHhcCcccCCCCceEEEEecCCCCCCCh-hhhcc
Q 035603 266 NNELRSLLVDISSK-------KK-------------KSNVTLSGLLNCIGGLWSTCGGERIIVFTTNHVDKLDP-ALIRR 324 (431)
Q Consensus 266 ~~~l~~l~~~~~~~-------~~-------------~~~~~~s~lL~~ldg~~~~~~~~~ivI~TTN~~~~Ld~-AllRp 324 (431)
...++.+|..+... ++ .....+..|+..+++... .+..++||+|||.++.||+ ++.+
T Consensus 110 ~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~l~~L~~~~~~~~~-~~~~~~ii~ttn~~~~l~~~~l~~- 187 (272)
T 1d2n_A 110 CQAMKKIFDDAYKSQLSCVVVDDIERLLDYVPIGPRFSNLVLQALLVLLKKAPP-QGRKLLIIGTTSRKDVLQEMEMLN- 187 (272)
T ss_dssp HHHHHHHHHHHHTSSEEEEEECCHHHHTTCBTTTTBCCHHHHHHHHHHTTCCCS-TTCEEEEEEEESCHHHHHHTTCTT-
T ss_pred HHHHHHHHHHHHhcCCcEEEEEChhhhhccCCCChhHHHHHHHHHHHHhcCccC-CCCCEEEEEecCChhhcchhhhhc-
Confidence 13456666654422 11 133445666666676532 3456889999999999988 4555
Q ss_pred CceeEEEEcCCCCH-HHHHHHHHH
Q 035603 325 GRMDKHIEMPYCCF-EAFKVLAKN 347 (431)
Q Consensus 325 GRfd~~I~~~~p~~-~~r~~i~~~ 347 (431)
||+..|++|.++. ++...++..
T Consensus 188 -rf~~~i~~p~l~~r~~i~~i~~~ 210 (272)
T 1d2n_A 188 -AFSTTIHVPNIATGEQLLEALEL 210 (272)
T ss_dssp -TSSEEEECCCEEEHHHHHHHHHH
T ss_pred -ccceEEcCCCccHHHHHHHHHHh
Confidence 9999999987765 555555443
No 40
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=99.54 E-value=5.5e-14 Score=148.32 Aligned_cols=148 Identities=20% Similarity=0.163 Sum_probs=102.0
Q ss_pred ccccccChhhHHHHHHHHHHHHhCHHHHHHhCCCCCceeEEeCCCCCcHHHHHHHHHHHcCCCeEEecccCcCChHH---
Q 035603 192 FDTLAMASKKKEAIKKDLIKFTEGKEYYAKIGKAWKRGYLLFGPPGTGKSTMIAAMANCLNYDVYDLELTSVENNNE--- 268 (431)
Q Consensus 192 f~~l~g~~~~k~~i~~~l~~~~~~~~~~~~~g~~~~rg~LL~GPPGtGKTsla~aiA~~l~~~i~~l~~~~~~~~~~--- 268 (431)
.++++|.+++++.+.+.+....... .. .+..+||+||||||||+++++||+.++.++..+++..+.....
T Consensus 80 ~~di~G~~~vk~~i~~~~~l~~~~~------~~-~g~~vll~Gp~GtGKTtlar~ia~~l~~~~~~i~~~~~~~~~~~~g 152 (543)
T 3m6a_A 80 DEEHHGLEKVKERILEYLAVQKLTK------SL-KGPILCLAGPPGVGKTSLAKSIAKSLGRKFVRISLGGVRDESEIRG 152 (543)
T ss_dssp HHHCSSCHHHHHHHHHHHHHHHHSS------SC-CSCEEEEESSSSSSHHHHHHHHHHHHTCEEEEECCCC---------
T ss_pred HHHhccHHHHHHHHHHHHHHHHhcc------cC-CCCEEEEECCCCCCHHHHHHHHHHhcCCCeEEEEecccchhhhhhh
Confidence 4568999999998876554322221 11 3557999999999999999999999999999998877533221
Q ss_pred ------------HHHHHHHhhhc---------cc----chhhHHHHHHHHhcCcccC-----------CCCceEEEEecC
Q 035603 269 ------------LRSLLVDISSK---------KK----KSNVTLSGLLNCIGGLWST-----------CGGERIIVFTTN 312 (431)
Q Consensus 269 ------------l~~l~~~~~~~---------~~----~~~~~~s~lL~~ldg~~~~-----------~~~~~ivI~TTN 312 (431)
+...|..+... +. ......+.||..||..... .-..++||+|||
T Consensus 153 ~~~~~ig~~~~~~~~~~~~a~~~~~vl~lDEid~l~~~~~~~~~~~LL~~ld~~~~~~~~~~~~~~~~~~~~v~iI~ttN 232 (543)
T 3m6a_A 153 HRRTYVGAMPGRIIQGMKKAGKLNPVFLLDEIDKMSSDFRGDPSSAMLEVLDPEQNSSFSDHYIEETFDLSKVLFIATAN 232 (543)
T ss_dssp -----------CHHHHHHTTCSSSEEEEEEESSSCC---------CCGGGTCTTTTTBCCCSSSCCCCBCSSCEEEEECS
T ss_pred HHHHHhccCchHHHHHHHHhhccCCEEEEhhhhhhhhhhccCHHHHHHHHHhhhhcceeecccCCeeecccceEEEeccC
Confidence 22233332211 11 1122457788888754211 014589999999
Q ss_pred CCCCCChhhhccCceeEEEEcCCCCHHHHHHHHHHhh
Q 035603 313 HVDKLDPALIRRGRMDKHIEMPYCCFEAFKVLAKNYL 349 (431)
Q Consensus 313 ~~~~Ld~AllRpGRfd~~I~~~~p~~~~r~~i~~~~l 349 (431)
.++.|||+|++ ||+ .|+++.|+.+++..|++.++
T Consensus 233 ~~~~l~~aL~~--R~~-vi~~~~~~~~e~~~Il~~~l 266 (543)
T 3m6a_A 233 NLATIPGPLRD--RME-IINIAGYTEIEKLEIVKDHL 266 (543)
T ss_dssp STTTSCHHHHH--HEE-EEECCCCCHHHHHHHHHHTH
T ss_pred ccccCCHHHHh--hcc-eeeeCCCCHHHHHHHHHHHH
Confidence 99999999999 996 69999999999999999987
No 41
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=99.54 E-value=1.2e-13 Score=127.44 Aligned_cols=175 Identities=18% Similarity=0.212 Sum_probs=116.0
Q ss_pred eccCCCCccccccChhhHHHHHHHHHHHHhCHHHHHHhCCCCCceeEEeCCCCCcHHHHHHHHHHHcCCC----------
Q 035603 185 YFEHPATFDTLAMASKKKEAIKKDLIKFTEGKEYYAKIGKAWKRGYLLFGPPGTGKSTMIAAMANCLNYD---------- 254 (431)
Q Consensus 185 ~~~~p~~f~~l~g~~~~k~~i~~~l~~~~~~~~~~~~~g~~~~rg~LL~GPPGtGKTsla~aiA~~l~~~---------- 254 (431)
....|.+|++++|.++.++.|.+.+.. | ..++.++|+||||||||++++++++.++..
T Consensus 15 ~~~~p~~~~~~~g~~~~~~~l~~~l~~-----------~-~~~~~~ll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~ 82 (250)
T 1njg_A 15 RKWRPQTFADVVGQEHVLTALANGLSL-----------G-RIHHAYLFSGTRGVGKTSIARLLAKGLNCETGITATPCGV 82 (250)
T ss_dssp HHTCCCSGGGCCSCHHHHHHHHHHHHH-----------T-CCCSEEEEECSTTSCHHHHHHHHHHHHHCTTCSCSSCCSC
T ss_pred hccCCccHHHHhCcHHHHHHHHHHHHc-----------C-CCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCcc
Confidence 345688899999999988887765532 1 123589999999999999999999987542
Q ss_pred --------------eEEecccCcCChHHHHHHHHHhhhc--------------ccchhhHHHHHHHHhcCcccCCCCceE
Q 035603 255 --------------VYDLELTSVENNNELRSLLVDISSK--------------KKKSNVTLSGLLNCIGGLWSTCGGERI 306 (431)
Q Consensus 255 --------------i~~l~~~~~~~~~~l~~l~~~~~~~--------------~~~~~~~~s~lL~~ldg~~~~~~~~~i 306 (431)
++.++.........+..++...... +.........|+..++.. ...+.
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlviDe~~~l~~~~~~~l~~~l~~~----~~~~~ 158 (250)
T 1njg_A 83 CDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEP----PEHVK 158 (250)
T ss_dssp SHHHHHHHTTCCSSEEEEETTCGGGHHHHHHHHHSCCCSCSSSSSEEEEEETGGGSCHHHHHHHHHHHHSC----CTTEE
T ss_pred cHHHHHHhccCCcceEEecCcccccHHHHHHHHHHhhhchhcCCceEEEEECcccccHHHHHHHHHHHhcC----CCceE
Confidence 2333333222334456665543211 222345677788888743 34588
Q ss_pred EEEecCCCCCCChhhhccCceeEEEEcCCCCHHHHHHHHHHhhchhcchh-HHHHHhHhccCCCCHHHHHHHh
Q 035603 307 IVFTTNHVDKLDPALIRRGRMDKHIEMPYCCFEAFKVLAKNYLEIESHEL-FHEIGSLLGETDITPADVAENL 378 (431)
Q Consensus 307 vI~TTN~~~~Ld~AllRpGRfd~~I~~~~p~~~~r~~i~~~~l~~~~~~~-~~~i~~l~~~~~~s~adI~~~l 378 (431)
+|++||.++.+++++.+ |+ ..|+++.++.++...++..++....... .+.+..++..++=.|.++..++
T Consensus 159 ~i~~t~~~~~~~~~l~~--r~-~~i~l~~l~~~e~~~~l~~~~~~~~~~~~~~~~~~l~~~~~G~~~~~~~~~ 228 (250)
T 1njg_A 159 FLLATTDPQKLPVTILS--RC-LQFHLKALDVEQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLT 228 (250)
T ss_dssp EEEEESCGGGSCHHHHT--TS-EEEECCCCCHHHHHHHHHHHHHHTTCCBCHHHHHHHHHHHTTCHHHHHHHH
T ss_pred EEEEeCChHhCCHHHHH--Hh-hhccCCCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHcCCCHHHHHHHH
Confidence 99999999999999998 64 6899999999999999988875432211 1223333333333555555443
No 42
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A
Probab=99.48 E-value=1.6e-13 Score=133.48 Aligned_cols=146 Identities=16% Similarity=0.171 Sum_probs=103.7
Q ss_pred eccCCCCccccccChhhHHHHHHHHHHHHhCHHHHHHhCCCCCceeEEeCCCCCcHHHHHHHHHHHc-----CCCeEEec
Q 035603 185 YFEHPATFDTLAMASKKKEAIKKDLIKFTEGKEYYAKIGKAWKRGYLLFGPPGTGKSTMIAAMANCL-----NYDVYDLE 259 (431)
Q Consensus 185 ~~~~p~~f~~l~g~~~~k~~i~~~l~~~~~~~~~~~~~g~~~~rg~LL~GPPGtGKTsla~aiA~~l-----~~~i~~l~ 259 (431)
....|.+|++++|.++.++.|.+.+. . |.. ..+||+||||||||++++++|+.+ +.+++.++
T Consensus 9 ~k~~p~~~~~~~g~~~~~~~l~~~l~----~-------~~~--~~~ll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~~~ 75 (319)
T 2chq_A 9 EKYRPRTLDEVVGQDEVIQRLKGYVE----R-------KNI--PHLLFSGPPGTGKTATAIALARDLFGENWRDNFIEMN 75 (319)
T ss_dssp TTTSCSSGGGSCSCHHHHHHHHTTTT----T-------TCC--CCEEEESSSSSSHHHHHHHHHHHHHTTCHHHHCEEEE
T ss_pred HhcCCCCHHHHhCCHHHHHHHHHHHh----C-------CCC--CeEEEECcCCcCHHHHHHHHHHHhcCCcccCCeEEEe
Confidence 44578999999999998887765442 1 211 249999999999999999999987 34577888
Q ss_pred ccCcCChHHHHHHHHHhh-------hc---------ccchhhHHHHHHHHhcCcccCCCCceEEEEecCCCCCCChhhhc
Q 035603 260 LTSVENNNELRSLLVDIS-------SK---------KKKSNVTLSGLLNCIGGLWSTCGGERIIVFTTNHVDKLDPALIR 323 (431)
Q Consensus 260 ~~~~~~~~~l~~l~~~~~-------~~---------~~~~~~~~s~lL~~ldg~~~~~~~~~ivI~TTN~~~~Ld~AllR 323 (431)
+++..+.+.++..+.... .. +.......+.|+..++. ....+++|++||.++.+++++.+
T Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vliiDe~~~l~~~~~~~L~~~le~----~~~~~~~i~~~~~~~~l~~~l~s 151 (319)
T 2chq_A 76 ASDERGIDVVRHKIKEFARTAPIGGAPFKIIFLDEADALTADAQAALRRTMEM----YSKSCRFILSCNYVSRIIEPIQS 151 (319)
T ss_dssp TTSTTCTTTSSHHHHHHHHSCCSSSCCCEEEEEETGGGSCHHHHHTTGGGTSS----SSSSEEEEEEESCGGGSCHHHHT
T ss_pred CccccChHHHHHHHHHHHhcCCCCCCCceEEEEeCCCcCCHHHHHHHHHHHHh----cCCCCeEEEEeCChhhcchHHHh
Confidence 776543333333332221 11 12223344556666654 33458899999999999999999
Q ss_pred cCceeEEEEcCCCCHHHHHHHHHHhhc
Q 035603 324 RGRMDKHIEMPYCCFEAFKVLAKNYLE 350 (431)
Q Consensus 324 pGRfd~~I~~~~p~~~~r~~i~~~~l~ 350 (431)
|+. .+++++|+.++...++...+.
T Consensus 152 --r~~-~i~~~~~~~~~~~~~l~~~~~ 175 (319)
T 2chq_A 152 --RCA-VFRFKPVPKEAMKKRLLEICE 175 (319)
T ss_dssp --TCE-EEECCCCCHHHHHHHHHHHHH
T ss_pred --hCe-EEEecCCCHHHHHHHHHHHHH
Confidence 665 899999999999998887764
No 43
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=99.48 E-value=9e-14 Score=139.14 Aligned_cols=154 Identities=18% Similarity=0.202 Sum_probs=102.6
Q ss_pred ccccChhhHHHHHHHHHHHHhCHHHH-HHhCC-CCCceeEEeCCCCCcHHHHHHHHHHHcCCCeEEecccCcCC------
Q 035603 194 TLAMASKKKEAIKKDLIKFTEGKEYY-AKIGK-AWKRGYLLFGPPGTGKSTMIAAMANCLNYDVYDLELTSVEN------ 265 (431)
Q Consensus 194 ~l~g~~~~k~~i~~~l~~~~~~~~~~-~~~g~-~~~rg~LL~GPPGtGKTsla~aiA~~l~~~i~~l~~~~~~~------ 265 (431)
.|+|.+.+++.|...+.......... ...+. ..++++||+||||||||++|++||+.++.+++.++++.+..
T Consensus 16 ~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~vll~GppGtGKT~la~~ia~~~~~~~~~~~~~~l~~~~~~g~ 95 (363)
T 3hws_A 16 YVIGQEQAKKVLAVAVYNHYKRLRNGDTSNGVELGKSNILLIGPTGSGKTLLAETLARLLDVPFTMADATTLTEAGYVGE 95 (363)
T ss_dssp HCCSCHHHHHHHHHHHHHHHHHHHTTSCSSSCCCCCCCEEEECCTTSSHHHHHHHHHHHTTCCEEEEEHHHHTTCHHHHH
T ss_pred hccCHHHHHHHHHHHHHHHHhhhccccccccccCCCCeEEEECCCCCCHHHHHHHHHHHcCCCEEEechHHhcccccccc
Confidence 36899999999988876544321100 00111 24679999999999999999999999999999999877642
Q ss_pred --hHHHHHHHHHhhh-------c----------ccc-----------hhhHHHHHHHHhcCcccC---------------
Q 035603 266 --NNELRSLLVDISS-------K----------KKK-----------SNVTLSGLLNCIGGLWST--------------- 300 (431)
Q Consensus 266 --~~~l~~l~~~~~~-------~----------~~~-----------~~~~~s~lL~~ldg~~~~--------------- 300 (431)
...+..++..... . ... .....+.||..|||....
T Consensus 96 ~~~~~~~~~~~~~~~~~~~~~~~vl~lDEid~l~~~~~~~~~~~~~~~~~~~~~Ll~~leg~~~~~~~~~~~~~~~~~~~ 175 (363)
T 3hws_A 96 DVENIIQKLLQKCDYDVQKAQRGIVYIDQIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTVAAVPPQGGRKHPQQEFL 175 (363)
T ss_dssp HHTHHHHHHHHHTTTCHHHHHHCEEEEECHHHHCCCSSCC---CHHHHHHHHHHHHHHHHCC----------------CC
T ss_pred cHHHHHHHHHHHhhhhHHhcCCcEEEEeChhhhcccccccccccccchHHHHHHHHHHhcCceeeccCccccccCCCceE
Confidence 2234455443311 1 000 012788999999964210
Q ss_pred --CCCceEEEEecCCC----------CC-----------------------------------CChhhhccCceeEEEEc
Q 035603 301 --CGGERIIVFTTNHV----------DK-----------------------------------LDPALIRRGRMDKHIEM 333 (431)
Q Consensus 301 --~~~~~ivI~TTN~~----------~~-----------------------------------Ld~AllRpGRfd~~I~~ 333 (431)
...++++|+|+|.. .. ++|+|+. |||..+.+
T Consensus 176 ~i~tsn~~~i~~g~~~~l~~~i~~~~~~~~~~gf~~~~~~~~~~~~~~~l~~~v~~~~l~~~~~~~~l~~--R~~~~~~~ 253 (363)
T 3hws_A 176 QVDTSKILFICGGAFAGLDKVISHRVETGSGIGFGATVKAKSDKASEGELLAQVEPEDLIKFGLIPEFIG--RLPVVATL 253 (363)
T ss_dssp CCCTTSSEEEEEECCTTHHHHHHHHHCCCC------------CCSCHHHHHHTCCHHHHHHHTCCHHHHT--TCCEEEEC
T ss_pred EEECCCceEEecCCcHHHHHHHHHhhhccccCCccccccccccchhhHHHHHhCCHHHHHHcCCCHHHhc--ccCeeeec
Confidence 11123444444432 11 7889988 99999999
Q ss_pred CCCCHHHHHHHHHHhh
Q 035603 334 PYCCFEAFKVLAKNYL 349 (431)
Q Consensus 334 ~~p~~~~r~~i~~~~l 349 (431)
++|+.+.+..|+...+
T Consensus 254 ~pl~~~~~~~I~~~~~ 269 (363)
T 3hws_A 254 NELSEEALIQILKEPK 269 (363)
T ss_dssp CCCCHHHHHHHHHSST
T ss_pred CCCCHHHHHHHHHHHH
Confidence 9999999999988743
No 44
>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}
Probab=99.48 E-value=4e-13 Score=132.40 Aligned_cols=144 Identities=16% Similarity=0.176 Sum_probs=100.2
Q ss_pred CccccccChhhHHHHHHHHHHHHhCHHHHHHhCCCCCceeEEeCCCCCcHHHHHHHHHHHcCCCeEEecccCcCChHHHH
Q 035603 191 TFDTLAMASKKKEAIKKDLIKFTEGKEYYAKIGKAWKRGYLLFGPPGTGKSTMIAAMANCLNYDVYDLELTSVENNNELR 270 (431)
Q Consensus 191 ~f~~l~g~~~~k~~i~~~l~~~~~~~~~~~~~g~~~~rg~LL~GPPGtGKTsla~aiA~~l~~~i~~l~~~~~~~~~~l~ 270 (431)
.+++++|.+++++.+...+.. ++++||+||||||||++|+++|+.++.+++.++++......++.
T Consensus 25 ~~~~i~g~~~~~~~l~~~l~~---------------~~~vll~G~pGtGKT~la~~la~~~~~~~~~i~~~~~~~~~~l~ 89 (331)
T 2r44_A 25 VGKVVVGQKYMINRLLIGICT---------------GGHILLEGVPGLAKTLSVNTLAKTMDLDFHRIQFTPDLLPSDLI 89 (331)
T ss_dssp HTTTCCSCHHHHHHHHHHHHH---------------TCCEEEESCCCHHHHHHHHHHHHHTTCCEEEEECCTTCCHHHHH
T ss_pred hccceeCcHHHHHHHHHHHHc---------------CCeEEEECCCCCcHHHHHHHHHHHhCCCeEEEecCCCCChhhcC
Confidence 356788998888777654431 25899999999999999999999999999988875322222221
Q ss_pred HHH--HHhhh-----------c-------ccchhhHHHHHHHHhcCc-------ccCCCCceEEEEecCCCC-----CCC
Q 035603 271 SLL--VDISS-----------K-------KKKSNVTLSGLLNCIGGL-------WSTCGGERIIVFTTNHVD-----KLD 318 (431)
Q Consensus 271 ~l~--~~~~~-----------~-------~~~~~~~~s~lL~~ldg~-------~~~~~~~~ivI~TTN~~~-----~Ld 318 (431)
... ..... . +.......+.|+..++.. .......++||+|+|..+ .|+
T Consensus 90 g~~~~~~~~~~~~~~~g~l~~~vl~iDEi~~~~~~~~~~Ll~~l~~~~~~~~g~~~~~~~~~~viat~np~~~~~~~~l~ 169 (331)
T 2r44_A 90 GTMIYNQHKGNFEVKKGPVFSNFILADEVNRSPAKVQSALLECMQEKQVTIGDTTYPLDNPFLVLATQNPVEQEGTYPLP 169 (331)
T ss_dssp EEEEEETTTTEEEEEECTTCSSEEEEETGGGSCHHHHHHHHHHHHHSEEEETTEEEECCSSCEEEEEECTTCCSCCCCCC
T ss_pred CceeecCCCCceEeccCcccccEEEEEccccCCHHHHHHHHHHHhcCceeeCCEEEECCCCEEEEEecCCCcccCcccCC
Confidence 100 00000 0 223445667777776532 111233478888888554 399
Q ss_pred hhhhccCceeEEEEcCCCCHHHHHHHHHHhhch
Q 035603 319 PALIRRGRMDKHIEMPYCCFEAFKVLAKNYLEI 351 (431)
Q Consensus 319 ~AllRpGRfd~~I~~~~p~~~~r~~i~~~~l~~ 351 (431)
++|++ ||+.++++++|+.+++..|++.....
T Consensus 170 ~~l~~--Rf~~~i~i~~p~~~~~~~il~~~~~~ 200 (331)
T 2r44_A 170 EAQVD--RFMMKIHLTYLDKESELEVMRRVSNM 200 (331)
T ss_dssp HHHHT--TSSEEEECCCCCHHHHHHHHHHHHCT
T ss_pred HHHHh--heeEEEEcCCCCHHHHHHHHHhcccc
Confidence 99999 99999999999999999999987653
No 45
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=99.47 E-value=7e-13 Score=137.43 Aligned_cols=143 Identities=18% Similarity=0.237 Sum_probs=99.4
Q ss_pred ccCCCCccccccChhhHHHHHHHHHHHHhCHHHHHHhCCCCCceeEEeCCCCCcHHHHHHHHHHHc----------CCCe
Q 035603 186 FEHPATFDTLAMASKKKEAIKKDLIKFTEGKEYYAKIGKAWKRGYLLFGPPGTGKSTMIAAMANCL----------NYDV 255 (431)
Q Consensus 186 ~~~p~~f~~l~g~~~~k~~i~~~l~~~~~~~~~~~~~g~~~~rg~LL~GPPGtGKTsla~aiA~~l----------~~~i 255 (431)
.-.|.+|+.|+|.++..+.+.+.+.. ..+.++||+||||||||++|+++|..+ +.++
T Consensus 173 ~~r~~~ld~iiGr~~~i~~l~~~l~r-------------~~~~~~LL~G~pG~GKT~la~~la~~l~~~~~p~~l~~~~~ 239 (468)
T 3pxg_A 173 IAKEDSLDPVIGRSKEIQRVIEVLSR-------------RTKNNPVLIGEPGVGKTAIAEGLAQQIINNEVPEILRDKRV 239 (468)
T ss_dssp HTTSSCSCCCCCCHHHHHHHHHHHHC-------------SSSCEEEEESCTTTTTHHHHHHHHHHHHSSCSCTTTSSCCE
T ss_pred HHhcCCCCCccCcHHHHHHHHHHHhc-------------cCCCCeEEECCCCCCHHHHHHHHHHHHHhCCCChhhcCCeE
Confidence 34677899999999888877654421 234689999999999999999999996 7889
Q ss_pred EEecccCcC---ChHHHHHHHHHhhhc-------ccchhhHHHHHHHHhcCcccCCCCceEEEEecCCCC-----CCChh
Q 035603 256 YDLELTSVE---NNNELRSLLVDISSK-------KKKSNVTLSGLLNCIGGLWSTCGGERIIVFTTNHVD-----KLDPA 320 (431)
Q Consensus 256 ~~l~~~~~~---~~~~l~~l~~~~~~~-------~~~~~~~~s~lL~~ldg~~~~~~~~~ivI~TTN~~~-----~Ld~A 320 (431)
+.++++... ....++.+|...... + ......+.|+..|+ .+.+.+|++||.++ .+|++
T Consensus 240 ~~l~~~~~~~g~~e~~~~~~~~~~~~~~~~iLfiD-~~~~a~~~L~~~L~------~g~v~vI~at~~~e~~~~~~~~~a 312 (468)
T 3pxg_A 240 MTLDMGTKYRGEFEDRLKKVMDEIRQAGNIILFID-AAIDASNILKPSLA------RGELQCIGATTLDEYRKYIEKDAA 312 (468)
T ss_dssp ECC----------CTTHHHHHHHHHTCCCCEEEEC-C--------CCCTT------SSSCEEEEECCTTTTHHHHTTCSH
T ss_pred EEeeCCccccchHHHHHHHHHHHHHhcCCeEEEEe-CchhHHHHHHHhhc------CCCEEEEecCCHHHHHHHhhcCHH
Confidence 888876211 123466666655532 2 11122222333332 23589999999988 69999
Q ss_pred hhccCceeEEEEcCCCCHHHHHHHHHHhhch
Q 035603 321 LIRRGRMDKHIEMPYCCFEAFKVLAKNYLEI 351 (431)
Q Consensus 321 llRpGRfd~~I~~~~p~~~~r~~i~~~~l~~ 351 (431)
|.| ||.. |.|+.|+.+++..|++.+...
T Consensus 313 l~~--Rf~~-i~v~~p~~e~~~~iL~~~~~~ 340 (468)
T 3pxg_A 313 LER--RFQP-IQVDQPSVDESIQILQGLRDR 340 (468)
T ss_dssp HHH--SEEE-EECCCCCHHHHHHHHHHTTTT
T ss_pred HHH--hCcc-ceeCCCCHHHHHHHHHHHHHH
Confidence 999 9985 999999999999999987653
No 46
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=99.47 E-value=1.7e-13 Score=133.26 Aligned_cols=153 Identities=15% Similarity=0.248 Sum_probs=107.0
Q ss_pred cccccChhhHHHHHHHHHHHHhCHHHHHHhCCCCCceeEEeCCCCCcHHHHHHHHHHHc---CCCeEEecccCcCChHHH
Q 035603 193 DTLAMASKKKEAIKKDLIKFTEGKEYYAKIGKAWKRGYLLFGPPGTGKSTMIAAMANCL---NYDVYDLELTSVENNNEL 269 (431)
Q Consensus 193 ~~l~g~~~~k~~i~~~l~~~~~~~~~~~~~g~~~~rg~LL~GPPGtGKTsla~aiA~~l---~~~i~~l~~~~~~~~~~l 269 (431)
++++|.+.+++.|...+......-. . ...+...+||+||||||||++|+++|+.+ +.+++.++++.+......
T Consensus 17 ~~i~G~~~~~~~l~~~i~~~~~~~~---~-~~~~~~~~ll~G~~GtGKt~la~~la~~~~~~~~~~~~~~~~~~~~~~~~ 92 (311)
T 4fcw_A 17 KRVVGQDEAIRAVADAIRRARAGLK---D-PNRPIGSFLFLGPTGVGKTELAKTLAATLFDTEEAMIRIDMTEYMEKHAV 92 (311)
T ss_dssp TTCCSCHHHHHHHHHHHHHHHHTCS---C-TTSCSEEEEEESCSSSSHHHHHHHHHHHHHSCGGGEEEEEGGGCCSTTHH
T ss_pred hhcCCHHHHHHHHHHHHHHHhcCCC---C-CCCCceEEEEECCCCcCHHHHHHHHHHHHcCCCcceEEeecccccccccH
Confidence 3567888888888887765432100 0 01122469999999999999999999998 456888888876543333
Q ss_pred HHHH-------------------HHhhhc-------ccchhhHHHHHHHHhcCcccCCC-------CceEEEEecCC---
Q 035603 270 RSLL-------------------VDISSK-------KKKSNVTLSGLLNCIGGLWSTCG-------GERIIVFTTNH--- 313 (431)
Q Consensus 270 ~~l~-------------------~~~~~~-------~~~~~~~~s~lL~~ldg~~~~~~-------~~~ivI~TTN~--- 313 (431)
..++ ...... +.......+.|+..|+......+ .++++|+|||.
T Consensus 93 ~~l~g~~~~~~~~~~~~~~~~~~~~~~~~vl~lDEi~~l~~~~~~~Ll~~le~~~~~~~~~~~~~~~~~iiI~ttn~~~~ 172 (311)
T 4fcw_A 93 SRLIGAPPGYVGYEEGGQLTEAVRRRPYSVILFDAIEKAHPDVFNILLQMLDDGRLTDSHGRTVDFRNTVIIMTSNLGSP 172 (311)
T ss_dssp HHHHCCCTTSTTTTTCCHHHHHHHHCSSEEEEEETGGGSCHHHHHHHHHHHHHSEEECTTSCEEECTTEEEEEEESTTHH
T ss_pred HHhcCCCCccccccccchHHHHHHhCCCeEEEEeChhhcCHHHHHHHHHHHhcCEEEcCCCCEEECCCcEEEEecccCHH
Confidence 3332 111111 33345677888888865321111 25789999998
Q ss_pred -----------------------CCCCChhhhccCceeEEEEcCCCCHHHHHHHHHHhhch
Q 035603 314 -----------------------VDKLDPALIRRGRMDKHIEMPYCCFEAFKVLAKNYLEI 351 (431)
Q Consensus 314 -----------------------~~~Ld~AllRpGRfd~~I~~~~p~~~~r~~i~~~~l~~ 351 (431)
...++|+|++ ||+..+.+++|+.+++..|++.++..
T Consensus 173 ~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~--R~~~~~~~~p~~~~~~~~i~~~~l~~ 231 (311)
T 4fcw_A 173 LILEGLQKGWPYERIRDEVFKVLQQHFRPEFLN--RLDEIVVFRPLTKEQIRQIVEIQMSY 231 (311)
T ss_dssp HHHTTTTSCCCSSTHHHHTHHHHHHHSCHHHHT--TCSEEEECCCCCHHHHHHHHHHHTHH
T ss_pred HHHhhhcccccHHHHHHHHHHHHHHhCCHHHHh--cCCeEEEeCCCCHHHHHHHHHHHHHH
Confidence 5578999998 99999999999999999999998853
No 47
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.47 E-value=4.2e-13 Score=140.70 Aligned_cols=163 Identities=18% Similarity=0.243 Sum_probs=108.2
Q ss_pred CcceeeeccCCCCccccccChhhHHHHHHHHHHHHhC-HHHHHHhCC---CCCceeEEeCCCCCcHHHHHHHHHHHcCCC
Q 035603 179 KKWSHVYFEHPATFDTLAMASKKKEAIKKDLIKFTEG-KEYYAKIGK---AWKRGYLLFGPPGTGKSTMIAAMANCLNYD 254 (431)
Q Consensus 179 ~~w~~~~~~~p~~f~~l~g~~~~k~~i~~~l~~~~~~-~~~~~~~g~---~~~rg~LL~GPPGtGKTsla~aiA~~l~~~ 254 (431)
..|. ..-.|.+|++|+|.++.++.|.+.+..+... +..|...|. +.++++||+||||||||++|+++|++++++
T Consensus 27 ~lW~--ekyrP~~~~dliG~~~~~~~L~~~l~~~~~~~~~~~~~~g~~~~~~~~~lLL~GppGtGKTtla~~la~~l~~~ 104 (516)
T 1sxj_A 27 KLWT--VKYAPTNLQQVCGNKGSVMKLKNWLANWENSKKNSFKHAGKDGSGVFRAAMLYGPPGIGKTTAAHLVAQELGYD 104 (516)
T ss_dssp CCHH--HHTCCSSGGGCCSCHHHHHHHHHHHHTHHHHHHTTTCCCCTTSTTSCSEEEEECSTTSSHHHHHHHHHHHTTCE
T ss_pred CCcc--cccCCCCHHHhcCCHHHHHHHHHHHHHhHhhchhhccccCccCCCCCcEEEEECCCCCCHHHHHHHHHHHcCCC
Confidence 4675 5568899999999999999988887765432 122223333 356899999999999999999999999999
Q ss_pred eEEecccCcCChHHHHHHHHHhh-------------------hc------------ccchhhHHHHHHHHhcCcccCCCC
Q 035603 255 VYDLELTSVENNNELRSLLVDIS-------------------SK------------KKKSNVTLSGLLNCIGGLWSTCGG 303 (431)
Q Consensus 255 i~~l~~~~~~~~~~l~~l~~~~~-------------------~~------------~~~~~~~~s~lL~~ldg~~~~~~~ 303 (431)
++.+++++......+...+.... .. .......+..|++.++.. ..
T Consensus 105 ~i~in~s~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~vliIDEid~l~~~~~~~l~~L~~~l~~~----~~ 180 (516)
T 1sxj_A 105 ILEQNASDVRSKTLLNAGVKNALDNMSVVGYFKHNEEAQNLNGKHFVIIMDEVDGMSGGDRGGVGQLAQFCRKT----ST 180 (516)
T ss_dssp EEEECTTSCCCHHHHHHTGGGGTTBCCSTTTTTC----CCSSTTSEEEEECSGGGCCTTSTTHHHHHHHHHHHC----SS
T ss_pred EEEEeCCCcchHHHHHHHHHHHhccccHHHHHhhhhhhhhccCCCeEEEEECCCccchhhHHHHHHHHHHHHhc----CC
Confidence 99999988766544433322110 11 111222345666666532 22
Q ss_pred ceEEEEecCCCCCCChhhhccCceeEEEEcCCCCHHHHHHHHHHhhch
Q 035603 304 ERIIVFTTNHVDKLDPALIRRGRMDKHIEMPYCCFEAFKVLAKNYLEI 351 (431)
Q Consensus 304 ~~ivI~TTN~~~~Ld~AllRpGRfd~~I~~~~p~~~~r~~i~~~~l~~ 351 (431)
.+|+|+++.....++ .+.| +...|.|+.|+.+++..++......
T Consensus 181 ~iIli~~~~~~~~l~-~l~~---r~~~i~f~~~~~~~~~~~L~~i~~~ 224 (516)
T 1sxj_A 181 PLILICNERNLPKMR-PFDR---VCLDIQFRRPDANSIKSRLMTIAIR 224 (516)
T ss_dssp CEEEEESCTTSSTTG-GGTT---TSEEEECCCCCHHHHHHHHHHHHHH
T ss_pred CEEEEEcCCCCccch-hhHh---ceEEEEeCCCCHHHHHHHHHHHHHH
Confidence 244444444434454 3444 4568999999999999888776543
No 48
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=99.47 E-value=6.2e-13 Score=136.97 Aligned_cols=144 Identities=19% Similarity=0.265 Sum_probs=103.0
Q ss_pred eccCCCCccccccChhhH---HHHHHHHHHHHhCHHHHHHhCCCCCceeEEeCCCCCcHHHHHHHHHHHcCCCeEEeccc
Q 035603 185 YFEHPATFDTLAMASKKK---EAIKKDLIKFTEGKEYYAKIGKAWKRGYLLFGPPGTGKSTMIAAMANCLNYDVYDLELT 261 (431)
Q Consensus 185 ~~~~p~~f~~l~g~~~~k---~~i~~~l~~~~~~~~~~~~~g~~~~rg~LL~GPPGtGKTsla~aiA~~l~~~i~~l~~~ 261 (431)
..-.|.+|++++|.+.++ +.|...+.. |. ..++||+||||||||++|++||+.++.+++.++..
T Consensus 18 ~r~rP~~l~~ivGq~~~~~~~~~L~~~i~~-----------~~--~~~vLL~GppGtGKTtlAr~ia~~~~~~f~~l~a~ 84 (447)
T 3pvs_A 18 ARMRPENLAQYIGQQHLLAAGKPLPRAIEA-----------GH--LHSMILWGPPGTGKTTLAEVIARYANADVERISAV 84 (447)
T ss_dssp HHTCCCSTTTCCSCHHHHSTTSHHHHHHHH-----------TC--CCEEEEECSTTSSHHHHHHHHHHHTTCEEEEEETT
T ss_pred HHhCCCCHHHhCCcHHHHhchHHHHHHHHc-----------CC--CcEEEEECCCCCcHHHHHHHHHHHhCCCeEEEEec
Confidence 345689999999999887 454443321 21 25899999999999999999999999999999876
Q ss_pred CcCChHHHHHHHHHhhhc--------------ccchhhHHHHHHHHhcCcccCCCCceEEEEec--CCCCCCChhhhccC
Q 035603 262 SVENNNELRSLLVDISSK--------------KKKSNVTLSGLLNCIGGLWSTCGGERIIVFTT--NHVDKLDPALIRRG 325 (431)
Q Consensus 262 ~~~~~~~l~~l~~~~~~~--------------~~~~~~~~s~lL~~ldg~~~~~~~~~ivI~TT--N~~~~Ld~AllRpG 325 (431)
.. +...++.++..+... +.........||..++. +.+++|++| |....++++|++
T Consensus 85 ~~-~~~~ir~~~~~a~~~~~~~~~~iLfIDEI~~l~~~~q~~LL~~le~------~~v~lI~att~n~~~~l~~aL~s-- 155 (447)
T 3pvs_A 85 TS-GVKEIREAIERARQNRNAGRRTILFVDEVHRFNKSQQDAFLPHIED------GTITFIGATTENPSFELNSALLS-- 155 (447)
T ss_dssp TC-CHHHHHHHHHHHHHHHHTTCCEEEEEETTTCC------CCHHHHHT------TSCEEEEEESSCGGGSSCHHHHT--
T ss_pred cC-CHHHHHHHHHHHHHhhhcCCCcEEEEeChhhhCHHHHHHHHHHHhc------CceEEEecCCCCcccccCHHHhC--
Confidence 64 345677776654422 22333455667777774 225666655 555689999999
Q ss_pred ceeEEEEcCCCCHHHHHHHHHHhhch
Q 035603 326 RMDKHIEMPYCCFEAFKVLAKNYLEI 351 (431)
Q Consensus 326 Rfd~~I~~~~p~~~~r~~i~~~~l~~ 351 (431)
|+. .+.++.|+.+++..+++.++..
T Consensus 156 R~~-v~~l~~l~~edi~~il~~~l~~ 180 (447)
T 3pvs_A 156 RAR-VYLLKSLSTEDIEQVLTQAMED 180 (447)
T ss_dssp TEE-EEECCCCCHHHHHHHHHHHHHC
T ss_pred cee-EEeeCCcCHHHHHHHHHHHHHH
Confidence 776 6789999999999999888753
No 49
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=99.46 E-value=7.7e-13 Score=129.02 Aligned_cols=149 Identities=17% Similarity=0.191 Sum_probs=105.6
Q ss_pred cceeeeccCCCCccccccChhhHHHHHHHHHHHHhCHHHHHHhCCCCCceeEEeCCCCCcHHHHHHHHHHHcCC-----C
Q 035603 180 KWSHVYFEHPATFDTLAMASKKKEAIKKDLIKFTEGKEYYAKIGKAWKRGYLLFGPPGTGKSTMIAAMANCLNY-----D 254 (431)
Q Consensus 180 ~w~~~~~~~p~~f~~l~g~~~~k~~i~~~l~~~~~~~~~~~~~g~~~~rg~LL~GPPGtGKTsla~aiA~~l~~-----~ 254 (431)
.|. ....|.+|++++|.+++++.|.+.+.. |. ..++||+||||||||++|+++|+.+.. .
T Consensus 14 ~~~--~k~~p~~~~~~~g~~~~~~~l~~~l~~-----------~~--~~~~ll~G~~G~GKT~la~~l~~~l~~~~~~~~ 78 (327)
T 1iqp_A 14 PWV--EKYRPQRLDDIVGQEHIVKRLKHYVKT-----------GS--MPHLLFAGPPGVGKTTAALALARELFGENWRHN 78 (327)
T ss_dssp CHH--HHTCCCSTTTCCSCHHHHHHHHHHHHH-----------TC--CCEEEEESCTTSSHHHHHHHHHHHHHGGGHHHH
T ss_pred chh--hccCCCCHHHhhCCHHHHHHHHHHHHc-----------CC--CCeEEEECcCCCCHHHHHHHHHHHhcCCcccCc
Confidence 565 456789999999999998887765432 21 125999999999999999999998642 4
Q ss_pred eEEecccCcCChHHHHHHHHHhh-------h-c--------ccchhhHHHHHHHHhcCcccCCCCceEEEEecCCCCCCC
Q 035603 255 VYDLELTSVENNNELRSLLVDIS-------S-K--------KKKSNVTLSGLLNCIGGLWSTCGGERIIVFTTNHVDKLD 318 (431)
Q Consensus 255 i~~l~~~~~~~~~~l~~l~~~~~-------~-~--------~~~~~~~~s~lL~~ldg~~~~~~~~~ivI~TTN~~~~Ld 318 (431)
++.+++++..+.+.++..+.... . . +.......+.|+..++.. ...+.+|+|||.++.++
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vliiDe~~~l~~~~~~~L~~~le~~----~~~~~~i~~~~~~~~l~ 154 (327)
T 1iqp_A 79 FLELNASDERGINVIREKVKEFARTKPIGGASFKIIFLDEADALTQDAQQALRRTMEMF----SSNVRFILSCNYSSKII 154 (327)
T ss_dssp EEEEETTCHHHHHTTHHHHHHHHHSCCGGGCSCEEEEEETGGGSCHHHHHHHHHHHHHT----TTTEEEEEEESCGGGSC
T ss_pred eEEeeccccCchHHHHHHHHHHHhhCCcCCCCCeEEEEeCCCcCCHHHHHHHHHHHHhc----CCCCeEEEEeCCccccC
Confidence 67777665422222333222211 1 1 222345567788777743 34478889999999999
Q ss_pred hhhhccCceeEEEEcCCCCHHHHHHHHHHhhc
Q 035603 319 PALIRRGRMDKHIEMPYCCFEAFKVLAKNYLE 350 (431)
Q Consensus 319 ~AllRpGRfd~~I~~~~p~~~~r~~i~~~~l~ 350 (431)
+++.+ |+. .+.+++++.++...++...+.
T Consensus 155 ~~l~s--r~~-~~~~~~l~~~~~~~~l~~~~~ 183 (327)
T 1iqp_A 155 EPIQS--RCA-IFRFRPLRDEDIAKRLRYIAE 183 (327)
T ss_dssp HHHHH--TEE-EEECCCCCHHHHHHHHHHHHH
T ss_pred HHHHh--hCc-EEEecCCCHHHHHHHHHHHHH
Confidence 99998 776 799999999999988887764
No 50
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=99.46 E-value=2.2e-12 Score=128.46 Aligned_cols=148 Identities=20% Similarity=0.267 Sum_probs=107.7
Q ss_pred eccCCCCccccccChhhHHHHHHHHHHHHhCHHHHHHhCCCCCceeEEeCCCCCcHHHHHHHHHHHcCC-----------
Q 035603 185 YFEHPATFDTLAMASKKKEAIKKDLIKFTEGKEYYAKIGKAWKRGYLLFGPPGTGKSTMIAAMANCLNY----------- 253 (431)
Q Consensus 185 ~~~~p~~f~~l~g~~~~k~~i~~~l~~~~~~~~~~~~~g~~~~rg~LL~GPPGtGKTsla~aiA~~l~~----------- 253 (431)
....|.+|++++|.++.++.|.+.+.. | ..+..+||+||||||||++++++|+.+++
T Consensus 8 ~k~rp~~~~~~vg~~~~~~~L~~~l~~-----------~-~~~~~~ll~G~~G~GKT~la~~la~~l~~~~~~~~~~~~~ 75 (373)
T 1jr3_A 8 RKWRPQTFADVVGQEHVLTALANGLSL-----------G-RIHHAYLFSGTRGVGKTSIARLLAKGLNCETGITATPCGV 75 (373)
T ss_dssp HHTCCCSTTTSCSCHHHHHHHHHHHHH-----------T-CCCSEEEEESCTTSSHHHHHHHHHHHHSCTTCSCSSCCSS
T ss_pred HhhCCCchhhccCcHHHHHHHHHHHHh-----------C-CCCeEEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCcc
Confidence 345788999999999998887765531 1 23457999999999999999999998865
Q ss_pred -------------CeEEecccCcCChHHHHHHHHHhhhc--------------ccchhhHHHHHHHHhcCcccCCCCceE
Q 035603 254 -------------DVYDLELTSVENNNELRSLLVDISSK--------------KKKSNVTLSGLLNCIGGLWSTCGGERI 306 (431)
Q Consensus 254 -------------~i~~l~~~~~~~~~~l~~l~~~~~~~--------------~~~~~~~~s~lL~~ldg~~~~~~~~~i 306 (431)
+++.++.......+.++.++...... +.-.....+.|+..++.. ...++
T Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~vliiDe~~~l~~~~~~~Ll~~le~~----~~~~~ 151 (373)
T 1jr3_A 76 CDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEP----PEHVK 151 (373)
T ss_dssp SHHHHHHHTSCCSSCEEEETTCSCCSSCHHHHHHHTTSCCSSSSSEEEEEECGGGSCHHHHHHHHHHHHSC----CSSEE
T ss_pred cHHHHHHhccCCCceEEecccccCCHHHHHHHHHHHhhccccCCeEEEEEECcchhcHHHHHHHHHHHhcC----CCceE
Confidence 23444443322233466666554321 222345677888888753 34588
Q ss_pred EEEecCCCCCCChhhhccCceeEEEEcCCCCHHHHHHHHHHhhch
Q 035603 307 IVFTTNHVDKLDPALIRRGRMDKHIEMPYCCFEAFKVLAKNYLEI 351 (431)
Q Consensus 307 vI~TTN~~~~Ld~AllRpGRfd~~I~~~~p~~~~r~~i~~~~l~~ 351 (431)
+|++||.+..+++++.+ |+ ..++++.|+.++...+++.++..
T Consensus 152 ~Il~~~~~~~l~~~l~s--r~-~~i~~~~l~~~~~~~~l~~~~~~ 193 (373)
T 1jr3_A 152 FLLATTDPQKLPVTILS--RC-LQFHLKALDVEQIRHQLEHILNE 193 (373)
T ss_dssp EEEEESCGGGSCHHHHT--TS-EEEECCCCCHHHHHHHHHHHHHH
T ss_pred EEEEeCChHhCcHHHHh--he-eEeeCCCCCHHHHHHHHHHHHHH
Confidence 99999999999999998 55 68999999999999999887753
No 51
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=99.44 E-value=1.5e-13 Score=122.56 Aligned_cols=136 Identities=19% Similarity=0.245 Sum_probs=93.3
Q ss_pred CCCCccccccChhhHHHHHHHHHHHHhCHHHHHHhCCCCCceeEEeCCCCCcHHHHHHHHHHHc----------CCCeEE
Q 035603 188 HPATFDTLAMASKKKEAIKKDLIKFTEGKEYYAKIGKAWKRGYLLFGPPGTGKSTMIAAMANCL----------NYDVYD 257 (431)
Q Consensus 188 ~p~~f~~l~g~~~~k~~i~~~l~~~~~~~~~~~~~g~~~~rg~LL~GPPGtGKTsla~aiA~~l----------~~~i~~ 257 (431)
.|.+|++++|.++..+.+.+.+.. ..++++||+||||||||++++++|+.+ +.+++.
T Consensus 17 ~~~~~~~~~g~~~~~~~l~~~l~~-------------~~~~~~ll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~~~ 83 (195)
T 1jbk_A 17 EQGKLDPVIGRDEEIRRTIQVLQR-------------RTKNNPVLIGEPGVGKTAIVEGLAQRIINGEVPEGLKGRRVLA 83 (195)
T ss_dssp HTTCSCCCCSCHHHHHHHHHHHTS-------------SSSCEEEEECCTTSCHHHHHHHHHHHHHHTCSCGGGTTCEEEE
T ss_pred hhccccccccchHHHHHHHHHHhc-------------CCCCceEEECCCCCCHHHHHHHHHHHHHhCCCchhhcCCcEEE
Confidence 477899999998877777654321 335789999999999999999999986 678888
Q ss_pred ecccCcC----C----hHHHHHHHHHhhhc--------ccch-----------hhHHHHHHHHhcCcccCCCCceEEEEe
Q 035603 258 LELTSVE----N----NNELRSLLVDISSK--------KKKS-----------NVTLSGLLNCIGGLWSTCGGERIIVFT 310 (431)
Q Consensus 258 l~~~~~~----~----~~~l~~l~~~~~~~--------~~~~-----------~~~~s~lL~~ldg~~~~~~~~~ivI~T 310 (431)
+++..+. . ...+..++...... ++.. ......|...++ ..++.+|+|
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~iDe~~~l~~~~~~~~~~~~~~~l~~~~~------~~~~~~i~~ 157 (195)
T 1jbk_A 84 LDMGALVAGAKYRGEFEERLKGVLNDLAKQEGNVILFIDELHTMVGAGKADGAMDAGNMLKPALA------RGELHCVGA 157 (195)
T ss_dssp ECHHHHHTTTCSHHHHHHHHHHHHHHHHHSTTTEEEEEETGGGGTT------CCCCHHHHHHHHH------TTSCCEEEE
T ss_pred eeHHHHhccCCccccHHHHHHHHHHHHhhcCCCeEEEEeCHHHHhccCcccchHHHHHHHHHhhc------cCCeEEEEe
Confidence 8765542 1 12344454433221 1111 111223333332 124778888
Q ss_pred cCCCC-----CCChhhhccCceeEEEEcCCCCHHHHHHHH
Q 035603 311 TNHVD-----KLDPALIRRGRMDKHIEMPYCCFEAFKVLA 345 (431)
Q Consensus 311 TN~~~-----~Ld~AllRpGRfd~~I~~~~p~~~~r~~i~ 345 (431)
||.++ .+|+++.+ ||+ .|+++.|+.+++.+++
T Consensus 158 ~~~~~~~~~~~~~~~l~~--r~~-~i~~~~p~~~~~~~il 194 (195)
T 1jbk_A 158 TTLDEYRQYIEKDAALER--RFQ-KVFVAEPSVEDTIAIL 194 (195)
T ss_dssp ECHHHHHHHTTTCHHHHT--TEE-EEECCCCCHHHHHTTC
T ss_pred CCHHHHHHHHhcCHHHHH--Hhc-eeecCCCCHHHHHHHh
Confidence 88876 79999999 998 6999999999988764
No 52
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.43 E-value=1.6e-12 Score=126.60 Aligned_cols=149 Identities=13% Similarity=0.185 Sum_probs=108.1
Q ss_pred cceeeeccCCCCccccccChhhHHHHHHHHHHHHhCHHHHHHhCCCCCceeEEeCCCCCcHHHHHHHHHHHc-----CCC
Q 035603 180 KWSHVYFEHPATFDTLAMASKKKEAIKKDLIKFTEGKEYYAKIGKAWKRGYLLFGPPGTGKSTMIAAMANCL-----NYD 254 (431)
Q Consensus 180 ~w~~~~~~~p~~f~~l~g~~~~k~~i~~~l~~~~~~~~~~~~~g~~~~rg~LL~GPPGtGKTsla~aiA~~l-----~~~ 254 (431)
.|. ....|.+|++++|.++.++.|.+.+. . |. .+. +||+||||||||++++++|+.+ +.+
T Consensus 10 ~~~--~~~~p~~~~~~~g~~~~~~~l~~~l~----~-------~~-~~~-~ll~G~~G~GKt~la~~l~~~l~~~~~~~~ 74 (323)
T 1sxj_B 10 PWV--EKYRPQVLSDIVGNKETIDRLQQIAK----D-------GN-MPH-MIISGMPGIGKTTSVHCLAHELLGRSYADG 74 (323)
T ss_dssp CHH--HHTCCSSGGGCCSCTHHHHHHHHHHH----S-------CC-CCC-EEEECSTTSSHHHHHHHHHHHHHGGGHHHH
T ss_pred cHH--HhcCCCCHHHHHCCHHHHHHHHHHHH----c-------CC-CCe-EEEECcCCCCHHHHHHHHHHHhcCCcccCC
Confidence 454 44578899999999999888766542 1 22 233 9999999999999999999986 345
Q ss_pred eEEecccCcCChHHHHHHHHHhh--------h-c--------ccchhhHHHHHHHHhcCcccCCCCceEEEEecCCCCCC
Q 035603 255 VYDLELTSVENNNELRSLLVDIS--------S-K--------KKKSNVTLSGLLNCIGGLWSTCGGERIIVFTTNHVDKL 317 (431)
Q Consensus 255 i~~l~~~~~~~~~~l~~l~~~~~--------~-~--------~~~~~~~~s~lL~~ldg~~~~~~~~~ivI~TTN~~~~L 317 (431)
++.++.++..+.+.+++++.... . . +.........|+..++.. .....+|++||.++.+
T Consensus 75 ~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~viiiDe~~~l~~~~~~~L~~~le~~----~~~~~~il~~~~~~~l 150 (323)
T 1sxj_B 75 VLELNASDDRGIDVVRNQIKHFAQKKLHLPPGKHKIVILDEADSMTAGAQQALRRTMELY----SNSTRFAFACNQSNKI 150 (323)
T ss_dssp EEEECTTSCCSHHHHHTHHHHHHHBCCCCCTTCCEEEEEESGGGSCHHHHHTTHHHHHHT----TTTEEEEEEESCGGGS
T ss_pred EEEecCccccChHHHHHHHHHHHhccccCCCCCceEEEEECcccCCHHHHHHHHHHHhcc----CCCceEEEEeCChhhc
Confidence 77788776545566666655432 1 1 112234455666666642 3447888899999999
Q ss_pred ChhhhccCceeEEEEcCCCCHHHHHHHHHHhhc
Q 035603 318 DPALIRRGRMDKHIEMPYCCFEAFKVLAKNYLE 350 (431)
Q Consensus 318 d~AllRpGRfd~~I~~~~p~~~~r~~i~~~~l~ 350 (431)
++++.+ |+. .++++.|+.++...++...+.
T Consensus 151 ~~~l~s--r~~-~i~~~~~~~~~~~~~l~~~~~ 180 (323)
T 1sxj_B 151 IEPLQS--QCA-ILRYSKLSDEDVLKRLLQIIK 180 (323)
T ss_dssp CHHHHT--TSE-EEECCCCCHHHHHHHHHHHHH
T ss_pred hhHHHh--hce-EEeecCCCHHHHHHHHHHHHH
Confidence 999998 554 899999999999999887654
No 53
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=99.43 E-value=2e-12 Score=141.49 Aligned_cols=143 Identities=19% Similarity=0.250 Sum_probs=100.2
Q ss_pred ccCCCCccccccChhhHHHHHHHHHHHHhCHHHHHHhCCCCCceeEEeCCCCCcHHHHHHHHHHHc----------CCCe
Q 035603 186 FEHPATFDTLAMASKKKEAIKKDLIKFTEGKEYYAKIGKAWKRGYLLFGPPGTGKSTMIAAMANCL----------NYDV 255 (431)
Q Consensus 186 ~~~p~~f~~l~g~~~~k~~i~~~l~~~~~~~~~~~~~g~~~~rg~LL~GPPGtGKTsla~aiA~~l----------~~~i 255 (431)
...|..|+.|+|.++.++.+.+.+. ...+.++||+||||||||++|+++|+.+ +..+
T Consensus 173 ~~~~~~ld~iiG~~~~i~~l~~~l~-------------~~~~~~vLL~G~pGtGKT~la~~la~~l~~~~~p~~l~~~~~ 239 (758)
T 3pxi_A 173 IAKEDSLDPVIGRSKEIQRVIEVLS-------------RRTKNNPVLIGEPGVGKTAIAEGLAQQIINNEVPEILRDKRV 239 (758)
T ss_dssp HTTSSCSCCCCCCHHHHHHHHHHHH-------------CSSSCEEEEESCTTTTTHHHHHHHHHHHHSSCSCTTTSSCCE
T ss_pred HHhhCCCCCccCchHHHHHHHHHHh-------------CCCCCCeEEECCCCCCHHHHHHHHHHHHhcCCCChhhcCCeE
Confidence 3456789999999998888766442 1345689999999999999999999997 8888
Q ss_pred EEecccCc---CChHHHHHHHHHhhhc-------ccchhhHHHHHHHHhcCcccCCCCceEEEEecCCCC-----CCChh
Q 035603 256 YDLELTSV---ENNNELRSLLVDISSK-------KKKSNVTLSGLLNCIGGLWSTCGGERIIVFTTNHVD-----KLDPA 320 (431)
Q Consensus 256 ~~l~~~~~---~~~~~l~~l~~~~~~~-------~~~~~~~~s~lL~~ldg~~~~~~~~~ivI~TTN~~~-----~Ld~A 320 (431)
+.+++..- .....++.+|..+... + ......+.|+..++ .+.+.+|+|||..+ .+||+
T Consensus 240 ~~~~~g~~~~G~~e~~l~~~~~~~~~~~~~iLfiD-~~~~~~~~L~~~l~------~~~v~~I~at~~~~~~~~~~~d~a 312 (758)
T 3pxi_A 240 MTLDMGTKYRGEFEDRLKKVMDEIRQAGNIILFID-AAIDASNILKPSLA------RGELQCIGATTLDEYRKYIEKDAA 312 (758)
T ss_dssp ECC----------CTTHHHHHHHHHTCCCCEEEEC-C--------CCCTT------SSSCEEEEECCTTTTHHHHTTCSH
T ss_pred EEecccccccchHHHHHHHHHHHHHhcCCEEEEEc-CchhHHHHHHHHHh------cCCEEEEeCCChHHHHHHhhccHH
Confidence 88887221 1223567777666543 2 11122222333332 24589999999988 79999
Q ss_pred hhccCceeEEEEcCCCCHHHHHHHHHHhhch
Q 035603 321 LIRRGRMDKHIEMPYCCFEAFKVLAKNYLEI 351 (431)
Q Consensus 321 llRpGRfd~~I~~~~p~~~~r~~i~~~~l~~ 351 (431)
|.| ||. .|.|+.|+.+++..|++.+...
T Consensus 313 l~r--Rf~-~i~v~~p~~~~~~~il~~~~~~ 340 (758)
T 3pxi_A 313 LER--RFQ-PIQVDQPSVDESIQILQGLRDR 340 (758)
T ss_dssp HHH--SEE-EEECCCCCHHHHHHHHHHTTTT
T ss_pred HHh--hCc-EEEeCCCCHHHHHHHHHHHHHH
Confidence 999 995 5999999999999999977653
No 54
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.42 E-value=1.2e-12 Score=129.43 Aligned_cols=149 Identities=17% Similarity=0.222 Sum_probs=106.0
Q ss_pred cceeeeccCCCCccccccChhhHHHHHHHHHHHHhCHHHHHHhCCCCCceeEEeCCCCCcHHHHHHHHHHHcC------C
Q 035603 180 KWSHVYFEHPATFDTLAMASKKKEAIKKDLIKFTEGKEYYAKIGKAWKRGYLLFGPPGTGKSTMIAAMANCLN------Y 253 (431)
Q Consensus 180 ~w~~~~~~~p~~f~~l~g~~~~k~~i~~~l~~~~~~~~~~~~~g~~~~rg~LL~GPPGtGKTsla~aiA~~l~------~ 253 (431)
.|. ....|.+|++++|.+++++.|...+. . |. ..++||+||||||||++++++|+.++ .
T Consensus 26 ~~~--~k~~p~~~~~i~g~~~~~~~l~~~l~----~-------~~--~~~~ll~G~~G~GKT~la~~la~~l~~~~~~~~ 90 (353)
T 1sxj_D 26 PWV--EKYRPKNLDEVTAQDHAVTVLKKTLK----S-------AN--LPHMLFYGPPGTGKTSTILALTKELYGPDLMKS 90 (353)
T ss_dssp CHH--HHTCCSSTTTCCSCCTTHHHHHHHTT----C-------TT--CCCEEEECSTTSSHHHHHHHHHHHHHHHHHHTT
T ss_pred cHH--HhcCCCCHHHhhCCHHHHHHHHHHHh----c-------CC--CCEEEEECCCCCCHHHHHHHHHHHhCCCccccc
Confidence 465 44578999999999999887765432 1 11 13499999999999999999999865 3
Q ss_pred CeEEecccCcCChHHHHHHHHHhhh-----------------c---------ccchhhHHHHHHHHhcCcccCCCCceEE
Q 035603 254 DVYDLELTSVENNNELRSLLVDISS-----------------K---------KKKSNVTLSGLLNCIGGLWSTCGGERII 307 (431)
Q Consensus 254 ~i~~l~~~~~~~~~~l~~l~~~~~~-----------------~---------~~~~~~~~s~lL~~ldg~~~~~~~~~iv 307 (431)
.++.+++++......+++.+..... . +.......+.|+..++... ....+
T Consensus 91 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vliiDE~~~l~~~~~~~Ll~~le~~~----~~~~~ 166 (353)
T 1sxj_D 91 RILELNASDERGISIVREKVKNFARLTVSKPSKHDLENYPCPPYKIIILDEADSMTADAQSALRRTMETYS----GVTRF 166 (353)
T ss_dssp SEEEECSSSCCCHHHHTTHHHHHHHSCCCCCCTTHHHHSCCCSCEEEEETTGGGSCHHHHHHHHHHHHHTT----TTEEE
T ss_pred ceEEEccccccchHHHHHHHHHHhhhcccccchhhcccCCCCCceEEEEECCCccCHHHHHHHHHHHHhcC----CCceE
Confidence 5788888775444444443322111 0 1223345677888777542 33677
Q ss_pred EEecCCCCCCChhhhccCceeEEEEcCCCCHHHHHHHHHHhhc
Q 035603 308 VFTTNHVDKLDPALIRRGRMDKHIEMPYCCFEAFKVLAKNYLE 350 (431)
Q Consensus 308 I~TTN~~~~Ld~AllRpGRfd~~I~~~~p~~~~r~~i~~~~l~ 350 (431)
|++||+++.+++++.+ |+. .+.+++|+.++...++...+.
T Consensus 167 il~~~~~~~l~~~l~s--R~~-~i~~~~~~~~~~~~~l~~~~~ 206 (353)
T 1sxj_D 167 CLICNYVTRIIDPLAS--QCS-KFRFKALDASNAIDRLRFISE 206 (353)
T ss_dssp EEEESCGGGSCHHHHH--HSE-EEECCCCCHHHHHHHHHHHHH
T ss_pred EEEeCchhhCcchhhc--cCc-eEEeCCCCHHHHHHHHHHHHH
Confidence 7889999999999999 775 899999999998888877653
No 55
>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G
Probab=99.40 E-value=3.9e-12 Score=125.60 Aligned_cols=147 Identities=20% Similarity=0.164 Sum_probs=92.7
Q ss_pred ccCCCCccccccChhhHHHHHHHHHHHHhCHHHHHHhCCCCCceeEEeCCCCCcHHHHHHHHHHHcCC-------C----
Q 035603 186 FEHPATFDTLAMASKKKEAIKKDLIKFTEGKEYYAKIGKAWKRGYLLFGPPGTGKSTMIAAMANCLNY-------D---- 254 (431)
Q Consensus 186 ~~~p~~f~~l~g~~~~k~~i~~~l~~~~~~~~~~~~~g~~~~rg~LL~GPPGtGKTsla~aiA~~l~~-------~---- 254 (431)
..+|.+|++++|.+++++.+...+ .. +...++||+||||||||++|+++|+.++. +
T Consensus 17 ~~~~~~f~~i~G~~~~~~~l~~~~----~~---------~~~~~vLl~G~~GtGKT~la~~la~~~~~~~~~~~~~~~~~ 83 (350)
T 1g8p_A 17 TRPVFPFSAIVGQEDMKLALLLTA----VD---------PGIGGVLVFGDRGTGKSTAVRALAALLPEIEAVEGCPVSSP 83 (350)
T ss_dssp -CCCCCGGGSCSCHHHHHHHHHHH----HC---------GGGCCEEEECCGGGCTTHHHHHHHHHSCCEEEETTCTTCCS
T ss_pred CCCCCCchhccChHHHHHHHHHHh----hC---------CCCceEEEECCCCccHHHHHHHHHHhCcccccccccccccc
Confidence 346688999999988776542211 11 12347999999999999999999999873 1
Q ss_pred ----------------------eEEecccCcCChHHH------HHHHHHhh------------hc-------ccchhhHH
Q 035603 255 ----------------------VYDLELTSVENNNEL------RSLLVDIS------------SK-------KKKSNVTL 287 (431)
Q Consensus 255 ----------------------i~~l~~~~~~~~~~l------~~l~~~~~------------~~-------~~~~~~~~ 287 (431)
++.+... .+...+ ...+.... .. +.......
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~l~g~~~~~~~~~~~~~~~~~g~~~~a~~~vl~iDEi~~l~~~~~ 161 (350)
T 1g8p_A 84 NVEMIPDWATVLSTNVIRKPTPVVDLPLG--VSEDRVVGALDIERAISKGEKAFEPGLLARANRGYLYIDECNLLEDHIV 161 (350)
T ss_dssp SGGGSCTTCCCSCCCEEEECCCEEEECTT--CCHHHHHCEECHHHHHHHCGGGEECCHHHHHTTEEEEETTGGGSCHHHH
T ss_pred ccccccchhhhhccccccCCCcccccCCC--cchhhheeechhhhhhcCCceeecCceeeecCCCEEEEeChhhCCHHHH
Confidence 1111110 011111 22222211 11 22334556
Q ss_pred HHHHHHhcCc----ccC-----CCCceEEEEecCCCC-CCChhhhccCceeEEEEcCCC-CHHHHHHHHHHhh
Q 035603 288 SGLLNCIGGL----WST-----CGGERIIVFTTNHVD-KLDPALIRRGRMDKHIEMPYC-CFEAFKVLAKNYL 349 (431)
Q Consensus 288 s~lL~~ldg~----~~~-----~~~~~ivI~TTN~~~-~Ld~AllRpGRfd~~I~~~~p-~~~~r~~i~~~~l 349 (431)
+.|+..++.- ... ....+++|+|||..+ .++++|++ ||+.++++++| +.+.+..|++..+
T Consensus 162 ~~Ll~~le~~~~~~~~~g~~~~~~~~~~li~~~n~~~~~l~~~L~~--R~~~~~~l~~~~~~~~~~~il~~~~ 232 (350)
T 1g8p_A 162 DLLLDVAQSGENVVERDGLSIRHPARFVLVGSGNPEEGDLRPQLLD--RFGLSVEVLSPRDVETRVEVIRRRD 232 (350)
T ss_dssp HHHHHHHHHSEEEECCTTCCEEEECCEEEEEEECSCSCCCCHHHHT--TCSEEEECCCCCSHHHHHHHHHHHH
T ss_pred HHHHHHHhcCceEEEecceEEeeCCceEEEEEeCCCCCCCCHHHHh--hcceEEEcCCCCcHHHHHHHHHHHH
Confidence 6777766531 110 012578999999755 89999999 99999999999 5777778887743
No 56
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20
Probab=99.39 E-value=7.8e-12 Score=125.54 Aligned_cols=153 Identities=20% Similarity=0.211 Sum_probs=101.5
Q ss_pred ccccChhhHHHHHHHHHHHHhCHHHHH-----------------HhCCCCCceeEEeCCCCCcHHHHHHHHHHHcCCCeE
Q 035603 194 TLAMASKKKEAIKKDLIKFTEGKEYYA-----------------KIGKAWKRGYLLFGPPGTGKSTMIAAMANCLNYDVY 256 (431)
Q Consensus 194 ~l~g~~~~k~~i~~~l~~~~~~~~~~~-----------------~~g~~~~rg~LL~GPPGtGKTsla~aiA~~l~~~i~ 256 (431)
.|+|.+++|+.|...+........... .-....+.++||+||||||||++|+++|+.++.+++
T Consensus 22 ~viGq~~ak~~l~~~~~~~~~~~~~g~~~~~~~~~~~~~p~~~~~~~~~~~~~ill~Gp~GtGKT~la~~la~~l~~~~~ 101 (376)
T 1um8_A 22 YVIGQEQAKKVFSVAVYNHYKRLSFKEKLKKQDNQDSNVELEHLEEVELSKSNILLIGPTGSGKTLMAQTLAKHLDIPIA 101 (376)
T ss_dssp TCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHCSHHHHHHHHHHHHTTCCCCCEEEECCTTSSHHHHHHHHHHHTTCCEE
T ss_pred HccCcHHHHHHHHHHHHHHHHHHHhhhhhhhccccccccccccccccccCCCCEEEECCCCCCHHHHHHHHHHHhCCCEE
Confidence 479999999999887754433221100 011234568999999999999999999999999999
Q ss_pred EecccCcCC--------hHHHHHHHHHhh-------hc-------ccchh--------------hHHHHHHHHhcCccc-
Q 035603 257 DLELTSVEN--------NNELRSLLVDIS-------SK-------KKKSN--------------VTLSGLLNCIGGLWS- 299 (431)
Q Consensus 257 ~l~~~~~~~--------~~~l~~l~~~~~-------~~-------~~~~~--------------~~~s~lL~~ldg~~~- 299 (431)
.+++..+.. ...+..++.... .. +.... ...+.||..|++...
T Consensus 102 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~vl~iDEi~~l~~~~~~~~~~~~~~~~~~~~~Ll~~le~~~~~ 181 (376)
T 1um8_A 102 ISDATSLTEAGYVGEDVENILTRLLQASDWNVQKAQKGIVFIDEIDKISRLSENRSITRDVSGEGVQQALLKIVEGSLVN 181 (376)
T ss_dssp EEEGGGCC--------CTHHHHHHHHHTTTCHHHHTTSEEEEETGGGC--------------CHHHHHHHHHHHHCCEEC
T ss_pred EecchhhhhcCcCCccHHHHHHHHHhhccchhhhcCCeEEEEcCHHHHhhhcCCCceecccchHHHHHHHHHHhhcccee
Confidence 999877531 223444443221 11 11111 167889999986420
Q ss_pred --C--------------CCCceEEEEecCC-----------------------------------------CCCCChhhh
Q 035603 300 --T--------------CGGERIIVFTTNH-----------------------------------------VDKLDPALI 322 (431)
Q Consensus 300 --~--------------~~~~~ivI~TTN~-----------------------------------------~~~Ld~All 322 (431)
. ...++++|+|||. ...+.|+|+
T Consensus 182 ~~~~~~~~~~~~~~~~i~t~n~~~I~~~~~~~l~~~l~~R~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~~~~p~l~ 261 (376)
T 1um8_A 182 IPPKGGRKHPEGNFIQIDTSDILFICAGAFDGLAEIIKKRTTQNVLGFTQEKMSKKEQEAILHLVQTHDLVTYGLIPELI 261 (376)
T ss_dssp ---------------CEECTTCEEEEEECCTTHHHHTTTSCSSCCCSCCCSSCCTTTTTTSGGGCCHHHHHHTTCCHHHH
T ss_pred cccccccccCCcceEEEecCCeEEEecCCHHHHHHHHHHHhcccccCCCchhhhccchhHHHhhcCHHHHhhcCCChHHh
Confidence 0 0133677787772 113567777
Q ss_pred ccCceeEEEEcCCCCHHHHHHHHHHh
Q 035603 323 RRGRMDKHIEMPYCCFEAFKVLAKNY 348 (431)
Q Consensus 323 RpGRfd~~I~~~~p~~~~r~~i~~~~ 348 (431)
. |++..|.|+.++.++...++...
T Consensus 262 ~--R~~~~i~~~~l~~~~l~~i~~~~ 285 (376)
T 1um8_A 262 G--RLPVLSTLDSISLEAMVDILQKP 285 (376)
T ss_dssp T--TCCEEEECCCCCHHHHHHHHHSS
T ss_pred c--CCCceeeccCCCHHHHHHHHhhh
Confidence 7 99999999999999998888753
No 57
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=99.39 E-value=1.5e-11 Score=121.68 Aligned_cols=184 Identities=17% Similarity=0.163 Sum_probs=116.9
Q ss_pred eccCCCCccccccChhhHHHHHHHHHHHHhCHHHHHHhCCCCCceeEEeCCCCCcHHHHHHHHHHHcCCCeEEecccCcC
Q 035603 185 YFEHPATFDTLAMASKKKEAIKKDLIKFTEGKEYYAKIGKAWKRGYLLFGPPGTGKSTMIAAMANCLNYDVYDLELTSVE 264 (431)
Q Consensus 185 ~~~~p~~f~~l~g~~~~k~~i~~~l~~~~~~~~~~~~~g~~~~rg~LL~GPPGtGKTsla~aiA~~l~~~i~~l~~~~~~ 264 (431)
..-.|.+|++++|.+.+++.+...+..-. ..|. .+..++|+||||||||+|+++||++++.++...+.....
T Consensus 17 ~~lr~~~l~~~~g~~~~~~~l~~~i~~~~-------~~~~-~~~~~ll~Gp~G~GKTTLa~~ia~~l~~~~~~~sg~~~~ 88 (334)
T 1in4_A 17 QFLRPKSLDEFIGQENVKKKLSLALEAAK-------MRGE-VLDHVLLAGPPGLGKTTLAHIIASELQTNIHVTSGPVLV 88 (334)
T ss_dssp CTTSCSSGGGCCSCHHHHHHHHHHHHHHH-------HHTC-CCCCEEEESSTTSSHHHHHHHHHHHHTCCEEEEETTTCC
T ss_pred HHcCCccHHHccCcHHHHHHHHHHHHHHH-------hcCC-CCCeEEEECCCCCcHHHHHHHHHHHhCCCEEEEechHhc
Confidence 33468899999998877776654443221 1122 235799999999999999999999999988777666555
Q ss_pred ChHHHHHHHHHhhhc--------ccchhhHHHHHHHHhcCcc------cCC--------CCceEEEEecCCCCCCChhhh
Q 035603 265 NNNELRSLLVDISSK--------KKKSNVTLSGLLNCIGGLW------STC--------GGERIIVFTTNHVDKLDPALI 322 (431)
Q Consensus 265 ~~~~l~~l~~~~~~~--------~~~~~~~~s~lL~~ldg~~------~~~--------~~~~ivI~TTN~~~~Ld~All 322 (431)
...++..++...... +.........|+..+.... ... -..+.++++||++..|+++++
T Consensus 89 ~~~~l~~~~~~~~~~~v~~iDE~~~l~~~~~e~L~~~~~~~~~~i~~~~~~~~~~i~~~l~~~~li~at~~~~~Ls~~l~ 168 (334)
T 1in4_A 89 KQGDMAAILTSLERGDVLFIDEIHRLNKAVEELLYSAIEDFQIDIMIGKGPSAKSIRIDIQPFTLVGATTRSGLLSSPLR 168 (334)
T ss_dssp SHHHHHHHHHHCCTTCEEEEETGGGCCHHHHHHHHHHHHTSCCCC---------------CCCEEEEEESCGGGSCHHHH
T ss_pred CHHHHHHHHHHccCCCEEEEcchhhcCHHHHHHHHHHHHhcccceeeccCcccccccccCCCeEEEEecCCcccCCHHHH
Confidence 555666655432221 1111223334444442211 000 013567789999999999999
Q ss_pred ccCceeEEEEcCCCCHHHHHHHHHHhhchhcch-hHHHHHhHhccCCCCHHHHHHHh
Q 035603 323 RRGRMDKHIEMPYCCFEAFKVLAKNYLEIESHE-LFHEIGSLLGETDITPADVAENL 378 (431)
Q Consensus 323 RpGRfd~~I~~~~p~~~~r~~i~~~~l~~~~~~-~~~~i~~l~~~~~~s~adI~~~l 378 (431)
+ ||...+.+++++.+++..+++......... ..+.+..++....=++..+..+|
T Consensus 169 s--R~~l~~~Ld~~~~~~l~~iL~~~~~~~~~~~~~~~~~~ia~~~~G~~R~a~~ll 223 (334)
T 1in4_A 169 S--RFGIILELDFYTVKELKEIIKRAASLMDVEIEDAAAEMIAKRSRGTPRIAIRLT 223 (334)
T ss_dssp T--TCSEEEECCCCCHHHHHHHHHHHHHHTTCCBCHHHHHHHHHTSTTCHHHHHHHH
T ss_pred H--hcCceeeCCCCCHHHHHHHHHHHHHHcCCCcCHHHHHHHHHhcCCChHHHHHHH
Confidence 9 999999999999999999998775432211 12234444444444555444333
No 58
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.39 E-value=6.8e-12 Score=124.24 Aligned_cols=149 Identities=24% Similarity=0.310 Sum_probs=104.7
Q ss_pred CcceeeeccCCCCccccccChhhHHHHHHHHHHHHhCHHHHHHhCCCCCceeEEeCCCCCcHHHHHHHHHHHcCC-----
Q 035603 179 KKWSHVYFEHPATFDTLAMASKKKEAIKKDLIKFTEGKEYYAKIGKAWKRGYLLFGPPGTGKSTMIAAMANCLNY----- 253 (431)
Q Consensus 179 ~~w~~~~~~~p~~f~~l~g~~~~k~~i~~~l~~~~~~~~~~~~~g~~~~rg~LL~GPPGtGKTsla~aiA~~l~~----- 253 (431)
..|. .--.|.+|++++|.+.+++.|...+. . |. .+ .+||+||||||||++++++|+.+..
T Consensus 13 ~~~~--~k~rp~~~~~~~g~~~~~~~L~~~i~----~-------g~-~~-~~ll~Gp~G~GKTtla~~la~~l~~~~~~~ 77 (340)
T 1sxj_C 13 LPWV--EKYRPETLDEVYGQNEVITTVRKFVD----E-------GK-LP-HLLFYGPPGTGKTSTIVALAREIYGKNYSN 77 (340)
T ss_dssp CCHH--HHTCCSSGGGCCSCHHHHHHHHHHHH----T-------TC-CC-CEEEECSSSSSHHHHHHHHHHHHHTTSHHH
T ss_pred CchH--HHhCCCcHHHhcCcHHHHHHHHHHHh----c-------CC-Cc-eEEEECCCCCCHHHHHHHHHHHHcCCCccc
Confidence 3565 44678999999999888777655442 1 22 12 3999999999999999999998743
Q ss_pred CeEEecccCcCChHHHHHHHHHhhhc----------------ccchhhHHHHHHHHhcCcccCCCCceEEEEecCCCCCC
Q 035603 254 DVYDLELTSVENNNELRSLLVDISSK----------------KKKSNVTLSGLLNCIGGLWSTCGGERIIVFTTNHVDKL 317 (431)
Q Consensus 254 ~i~~l~~~~~~~~~~l~~l~~~~~~~----------------~~~~~~~~s~lL~~ldg~~~~~~~~~ivI~TTN~~~~L 317 (431)
.+..++.++..+.+.+++.+...... +.-.....+.|+..++.. .....+|++||.+..+
T Consensus 78 ~~~~~~~~~~~~~~~ir~~i~~~~~~~~~~~~~~~viiiDe~~~l~~~~~~~L~~~le~~----~~~~~~il~~n~~~~i 153 (340)
T 1sxj_C 78 MVLELNASDDRGIDVVRNQIKDFASTRQIFSKGFKLIILDEADAMTNAAQNALRRVIERY----TKNTRFCVLANYAHKL 153 (340)
T ss_dssp HEEEECTTSCCSHHHHHTHHHHHHHBCCSSSCSCEEEEETTGGGSCHHHHHHHHHHHHHT----TTTEEEEEEESCGGGS
T ss_pred eEEEEcCcccccHHHHHHHHHHHHhhcccCCCCceEEEEeCCCCCCHHHHHHHHHHHhcC----CCCeEEEEEecCcccc
Confidence 36667776644455565544332211 112234566777777643 2346788889999999
Q ss_pred ChhhhccCceeEEEEcCCCCHHHHHHHHHHhh
Q 035603 318 DPALIRRGRMDKHIEMPYCCFEAFKVLAKNYL 349 (431)
Q Consensus 318 d~AllRpGRfd~~I~~~~p~~~~r~~i~~~~l 349 (431)
+|++.+ |+. .+.++.++.++....+...+
T Consensus 154 ~~~i~s--R~~-~~~~~~l~~~~~~~~l~~~~ 182 (340)
T 1sxj_C 154 TPALLS--QCT-RFRFQPLPQEAIERRIANVL 182 (340)
T ss_dssp CHHHHT--TSE-EEECCCCCHHHHHHHHHHHH
T ss_pred chhHHh--hce-eEeccCCCHHHHHHHHHHHH
Confidence 999999 665 78899988888887777655
No 59
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=99.38 E-value=2.4e-12 Score=140.93 Aligned_cols=171 Identities=15% Similarity=0.180 Sum_probs=114.6
Q ss_pred cccccChhhHHHHHHHHHHHHhCHHHHHHhCCC---CCc-eeEEeCCCCCcHHHHHHHHHHHc---CCCeEEecccCcCC
Q 035603 193 DTLAMASKKKEAIKKDLIKFTEGKEYYAKIGKA---WKR-GYLLFGPPGTGKSTMIAAMANCL---NYDVYDLELTSVEN 265 (431)
Q Consensus 193 ~~l~g~~~~k~~i~~~l~~~~~~~~~~~~~g~~---~~r-g~LL~GPPGtGKTsla~aiA~~l---~~~i~~l~~~~~~~ 265 (431)
+.|+|.++.++.|.+.+..... |.. .|. ++||+||||||||++|+++|..+ +.+++.++++.+..
T Consensus 491 ~~viGq~~a~~~l~~~i~~~~~--------~~~~~~~p~~~~Ll~Gp~GtGKT~lA~ala~~l~~~~~~~i~i~~s~~~~ 562 (758)
T 3pxi_A 491 SRVIGQDEAVVAVAKAVRRARA--------GLKDPKRPIGSFIFLGPTGVGKTELARALAESIFGDEESMIRIDMSEYME 562 (758)
T ss_dssp TTSCSCHHHHHHHHHHHHHHTT--------TCSCTTSCSEEEEEESCTTSSHHHHHHHHHHHHHSCTTCEEEEEGGGGCS
T ss_pred CcCcChHHHHHHHHHHHHHHHc--------ccCCCCCCceEEEEECCCCCCHHHHHHHHHHHhcCCCcceEEEechhccc
Confidence 4688999998888887765442 221 122 69999999999999999999997 67899999987642
Q ss_pred h-----HHHHHHHHHhhhc-------ccchhhHHHHHHHHhcCcccC-------CCCceEEEEecCCCCC----------
Q 035603 266 N-----NELRSLLVDISSK-------KKKSNVTLSGLLNCIGGLWST-------CGGERIIVFTTNHVDK---------- 316 (431)
Q Consensus 266 ~-----~~l~~l~~~~~~~-------~~~~~~~~s~lL~~ldg~~~~-------~~~~~ivI~TTN~~~~---------- 316 (431)
. ..+...+...... +.......+.||+.||.-.-. ...+++||+|||.+..
T Consensus 563 ~~~~~~~~l~~~~~~~~~~vl~lDEi~~~~~~~~~~Ll~~le~g~~~~~~g~~~~~~~~~iI~ttn~~~~~~~~~~~~~~ 642 (758)
T 3pxi_A 563 KHSTSGGQLTEKVRRKPYSVVLLDAIEKAHPDVFNILLQVLEDGRLTDSKGRTVDFRNTILIMTSNVGASEKDKVMGELK 642 (758)
T ss_dssp SCCCC---CHHHHHHCSSSEEEEECGGGSCHHHHHHHHHHHHHSBCC-----CCBCTTCEEEEEESSSTTCCHHHHHHHH
T ss_pred ccccccchhhHHHHhCCCeEEEEeCccccCHHHHHHHHHHhccCeEEcCCCCEeccCCeEEEEeCCCChhhHHHHHHHHH
Confidence 2 2233333222221 344567788899988752211 1234799999997654
Q ss_pred --CChhhhccCceeEEEEcCCCCHHHHHHHHHHhhchhcchhHHHHHhHhccCCCCHHHHHHH
Q 035603 317 --LDPALIRRGRMDKHIEMPYCCFEAFKVLAKNYLEIESHELFHEIGSLLGETDITPADVAEN 377 (431)
Q Consensus 317 --Ld~AllRpGRfd~~I~~~~p~~~~r~~i~~~~l~~~~~~~~~~i~~l~~~~~~s~adI~~~ 377 (431)
++|+|+. |||..|.|++|+.+++..|++.++... ...+...-....++++-+..+
T Consensus 643 ~~f~p~l~~--Rl~~~i~~~~l~~~~~~~i~~~~l~~~----~~~~~~~~~~~~~~~~a~~~l 699 (758)
T 3pxi_A 643 RAFRPEFIN--RIDEIIVFHSLEKKHLTEIVSLMSDQL----TKRLKEQDLSIELTDAAKAKV 699 (758)
T ss_dssp HHSCHHHHT--TSSEEEECC--CHHHHHHHHHHHHHHH----HHHHHTTTCEEEECHHHHHHH
T ss_pred hhCCHHHHh--hCCeEEecCCCCHHHHHHHHHHHHHHH----HHHHHhCCCeEEECHHHHHHH
Confidence 7899988 999999999999999999999887532 122221111235676666544
No 60
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=99.36 E-value=2.5e-12 Score=119.42 Aligned_cols=150 Identities=14% Similarity=0.131 Sum_probs=91.6
Q ss_pred eccCCCCccccccChhhHHHHHHHHHHHHhCHHHHHHhCCCCCceeEEeCCCCCcHHHHHHHHHHHcC---CCeEEeccc
Q 035603 185 YFEHPATFDTLAMASKKKEAIKKDLIKFTEGKEYYAKIGKAWKRGYLLFGPPGTGKSTMIAAMANCLN---YDVYDLELT 261 (431)
Q Consensus 185 ~~~~p~~f~~l~g~~~~k~~i~~~l~~~~~~~~~~~~~g~~~~rg~LL~GPPGtGKTsla~aiA~~l~---~~i~~l~~~ 261 (431)
.+.++.+|+++++.+. .+.+.+.+..+... +.++++||+||||||||++++++|++++ .+++.+++.
T Consensus 20 ~~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~---------~~~~~~ll~G~~G~GKT~la~~l~~~~~~~~~~~~~~~~~ 89 (242)
T 3bos_A 20 HLPDDETFTSYYPAAG-NDELIGALKSAASG---------DGVQAIYLWGPVKSGRTHLIHAACARANELERRSFYIPLG 89 (242)
T ss_dssp CCCTTCSTTTSCC--C-CHHHHHHHHHHHHT---------CSCSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEGG
T ss_pred CCCCCCChhhccCCCC-CHHHHHHHHHHHhC---------CCCCeEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEEHH
Confidence 4555689999998332 22333444444432 2357899999999999999999999875 677777776
Q ss_pred CcCChHHHHHHHHHhhhc-----cc-----chhhHHHHHHHHhcCcccCCCCce-EEEEecCCCC---CCChhhhccCce
Q 035603 262 SVENNNELRSLLVDISSK-----KK-----KSNVTLSGLLNCIGGLWSTCGGER-IIVFTTNHVD---KLDPALIRRGRM 327 (431)
Q Consensus 262 ~~~~~~~l~~l~~~~~~~-----~~-----~~~~~~s~lL~~ldg~~~~~~~~~-ivI~TTN~~~---~Ld~AllRpGRf 327 (431)
.+... +...+...... ++ ........|+..++...... .. +|+.|++.++ .+++++.+ |+
T Consensus 90 ~~~~~--~~~~~~~~~~~~vliiDe~~~~~~~~~~~~~l~~~l~~~~~~~--~~~ii~~~~~~~~~~~~~~~~l~~--r~ 163 (242)
T 3bos_A 90 IHASI--STALLEGLEQFDLICIDDVDAVAGHPLWEEAIFDLYNRVAEQK--RGSLIVSASASPMEAGFVLPDLVS--RM 163 (242)
T ss_dssp GGGGS--CGGGGTTGGGSSEEEEETGGGGTTCHHHHHHHHHHHHHHHHHC--SCEEEEEESSCTTTTTCCCHHHHH--HH
T ss_pred HHHHH--HHHHHHhccCCCEEEEeccccccCCHHHHHHHHHHHHHHHHcC--CCeEEEEcCCCHHHHHHhhhhhhh--Hh
Confidence 54211 11111111111 11 11112445666665443221 23 4444444443 56799998 77
Q ss_pred e--EEEEcCCCCHHHHHHHHHHhhc
Q 035603 328 D--KHIEMPYCCFEAFKVLAKNYLE 350 (431)
Q Consensus 328 d--~~I~~~~p~~~~r~~i~~~~l~ 350 (431)
+ ..++++.|+.+++..++..++.
T Consensus 164 ~~~~~i~l~~~~~~~~~~~l~~~~~ 188 (242)
T 3bos_A 164 HWGLTYQLQPMMDDEKLAALQRRAA 188 (242)
T ss_dssp HHSEEEECCCCCGGGHHHHHHHHHH
T ss_pred hcCceEEeCCCCHHHHHHHHHHHHH
Confidence 5 8999999999999999988774
No 61
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=99.36 E-value=7.7e-12 Score=122.88 Aligned_cols=150 Identities=16% Similarity=0.207 Sum_probs=96.7
Q ss_pred ccCCCCccccc-cChhhHHHHHHHHHHHHhCHHHHHHhCCCCCceeEEeCCCCCcHHHHHHHHHHHc---CCCeEEeccc
Q 035603 186 FEHPATFDTLA-MASKKKEAIKKDLIKFTEGKEYYAKIGKAWKRGYLLFGPPGTGKSTMIAAMANCL---NYDVYDLELT 261 (431)
Q Consensus 186 ~~~p~~f~~l~-g~~~~k~~i~~~l~~~~~~~~~~~~~g~~~~rg~LL~GPPGtGKTsla~aiA~~l---~~~i~~l~~~ 261 (431)
+.+..+|++++ |... ... ...+......+ + ..+.+++|+||||||||++++++|+++ +.+++.+++.
T Consensus 4 l~~~~~f~~fv~g~~~-~~a-~~~~~~~~~~~------~-~~~~~lll~G~~GtGKT~la~~i~~~~~~~~~~~~~i~~~ 74 (324)
T 1l8q_A 4 LNPKYTLENFIVGEGN-RLA-YEVVKEALENL------G-SLYNPIFIYGSVGTGKTHLLQAAGNEAKKRGYRVIYSSAD 74 (324)
T ss_dssp CCTTCCSSSCCCCTTT-HHH-HHHHHHHHHTT------T-TSCSSEEEECSSSSSHHHHHHHHHHHHHHTTCCEEEEEHH
T ss_pred CCCCCCcccCCCCCcH-HHH-HHHHHHHHhCc------C-CCCCeEEEECCCCCcHHHHHHHHHHHHHHCCCEEEEEEHH
Confidence 45567899987 4333 222 22343333332 1 235689999999999999999999998 8999999876
Q ss_pred CcCChHHHHH--------HHHHhhh-c-----ccc---h--hhHHHHHHHHhcCcccCCCCceEEEEecCCCC---CCCh
Q 035603 262 SVENNNELRS--------LLVDISS-K-----KKK---S--NVTLSGLLNCIGGLWSTCGGERIIVFTTNHVD---KLDP 319 (431)
Q Consensus 262 ~~~~~~~l~~--------l~~~~~~-~-----~~~---~--~~~~s~lL~~ldg~~~~~~~~~ivI~TTN~~~---~Ld~ 319 (431)
.+. ..+.. .|..... . ++. . ......++..++..... +.++|+.++|.+. .+++
T Consensus 75 ~~~--~~~~~~~~~~~~~~~~~~~~~~~vL~iDEi~~l~~~~~~~~~l~~~l~~~~~~--~~~iii~~~~~~~~l~~l~~ 150 (324)
T 1l8q_A 75 DFA--QAMVEHLKKGTINEFRNMYKSVDLLLLDDVQFLSGKERTQIEFFHIFNTLYLL--EKQIILASDRHPQKLDGVSD 150 (324)
T ss_dssp HHH--HHHHHHHHHTCHHHHHHHHHTCSEEEEECGGGGTTCHHHHHHHHHHHHHHHHT--TCEEEEEESSCGGGCTTSCH
T ss_pred HHH--HHHHHHHHcCcHHHHHHHhcCCCEEEEcCcccccCChHHHHHHHHHHHHHHHC--CCeEEEEecCChHHHHHhhh
Confidence 541 11111 1111111 1 111 1 13455566666554322 2367777777766 6899
Q ss_pred hhhccCcee--EEEEcCCCCHHHHHHHHHHhhch
Q 035603 320 ALIRRGRMD--KHIEMPYCCFEAFKVLAKNYLEI 351 (431)
Q Consensus 320 AllRpGRfd--~~I~~~~p~~~~r~~i~~~~l~~ 351 (431)
+|.+ ||+ ..+++++ +.+++..+++.++..
T Consensus 151 ~L~s--R~~~~~~i~l~~-~~~e~~~il~~~~~~ 181 (324)
T 1l8q_A 151 RLVS--RFEGGILVEIEL-DNKTRFKIIKEKLKE 181 (324)
T ss_dssp HHHH--HHHTSEEEECCC-CHHHHHHHHHHHHHH
T ss_pred Hhhh--cccCceEEEeCC-CHHHHHHHHHHHHHh
Confidence 9999 886 7899999 999999999988753
No 62
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=99.36 E-value=7.6e-12 Score=136.89 Aligned_cols=147 Identities=17% Similarity=0.247 Sum_probs=105.4
Q ss_pred ccccChhhHHHHHHHHHHHHhCHHHHHHhCCC----CCceeEEeCCCCCcHHHHHHHHHHHcCCCeEEecccCcCCh---
Q 035603 194 TLAMASKKKEAIKKDLIKFTEGKEYYAKIGKA----WKRGYLLFGPPGTGKSTMIAAMANCLNYDVYDLELTSVENN--- 266 (431)
Q Consensus 194 ~l~g~~~~k~~i~~~l~~~~~~~~~~~~~g~~----~~rg~LL~GPPGtGKTsla~aiA~~l~~~i~~l~~~~~~~~--- 266 (431)
.|+|.++.++.|...+.... .|.. +...+||+||||||||++|+++|+.++.+++.++++.+...
T Consensus 459 ~v~g~~~~~~~l~~~i~~~~--------~g~~~~~~p~~~~ll~G~~GtGKT~la~~la~~l~~~~~~i~~s~~~~~~~~ 530 (758)
T 1r6b_X 459 LVFGQDKAIEALTEAIKMAR--------AGLGHEHKPVGSFLFAGPTGVGKTEVTVQLSKALGIELLRFDMSEYMERHTV 530 (758)
T ss_dssp TSCSCHHHHHHHHHHHHHHH--------TTCSCTTSCSEEEEEECSTTSSHHHHHHHHHHHHTCEEEEEEGGGCSSSSCC
T ss_pred hccCHHHHHHHHHHHHHHHh--------cccCCCCCCceEEEEECCCCCcHHHHHHHHHHHhcCCEEEEechhhcchhhH
Confidence 47788888877766554322 2332 12369999999999999999999999999999998875321
Q ss_pred ----------------HHHHHHHHHhhhc-------ccchhhHHHHHHHHhcCcccC--CC-----CceEEEEecCCCC-
Q 035603 267 ----------------NELRSLLVDISSK-------KKKSNVTLSGLLNCIGGLWST--CG-----GERIIVFTTNHVD- 315 (431)
Q Consensus 267 ----------------~~l~~l~~~~~~~-------~~~~~~~~s~lL~~ldg~~~~--~~-----~~~ivI~TTN~~~- 315 (431)
..+...+...... +......++.|+..||.-.-. .+ .+++||+|||...
T Consensus 531 ~~l~g~~~g~~g~~~~~~l~~~~~~~~~~vl~lDEi~~~~~~~~~~Ll~~le~~~~~~~~g~~~~~~~~~iI~tsN~~~~ 610 (758)
T 1r6b_X 531 SRLIGAPPGYVGFDQGGLLTDAVIKHPHAVLLLDEIEKAHPDVFNILLQVMDNGTLTDNNGRKADFRNVVLVMTTNAGVR 610 (758)
T ss_dssp SSSCCCCSCSHHHHHTTHHHHHHHHCSSEEEEEETGGGSCHHHHHHHHHHHHHSEEEETTTEEEECTTEEEEEEECSSCC
T ss_pred hhhcCCCCCCcCccccchHHHHHHhCCCcEEEEeCccccCHHHHHHHHHHhcCcEEEcCCCCEEecCCeEEEEecCcchh
Confidence 1122333222222 334566788899988742111 11 3478999999754
Q ss_pred ------------------------CCChhhhccCceeEEEEcCCCCHHHHHHHHHHhhc
Q 035603 316 ------------------------KLDPALIRRGRMDKHIEMPYCCFEAFKVLAKNYLE 350 (431)
Q Consensus 316 ------------------------~Ld~AllRpGRfd~~I~~~~p~~~~r~~i~~~~l~ 350 (431)
.++|+|+. |||..|.|++++.+++..|++.++.
T Consensus 611 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~--R~~~~i~~~~l~~~~~~~i~~~~l~ 667 (758)
T 1r6b_X 611 ETERKSIGLIHQDNSTDAMEEIKKIFTPEFRN--RLDNIIWFDHLSTDVIHQVVDKFIV 667 (758)
T ss_dssp -----------------CHHHHHHHSCHHHHT--TCSEEEECCCCCHHHHHHHHHHHHH
T ss_pred hhhhcccCccccchHHHHHHHHHHhcCHHHHh--hCCcceeeCCCCHHHHHHHHHHHHH
Confidence 67899998 9999999999999999999999875
No 63
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.33 E-value=1.7e-11 Score=121.36 Aligned_cols=175 Identities=12% Similarity=0.131 Sum_probs=111.9
Q ss_pred eccCCCCccccccChhhHHHHHHHHHHHHhCHHHHHHhCCCCCceeEEeCCCCCcHHHHHHHHHHHcCC-----------
Q 035603 185 YFEHPATFDTLAMASKKKEAIKKDLIKFTEGKEYYAKIGKAWKRGYLLFGPPGTGKSTMIAAMANCLNY----------- 253 (431)
Q Consensus 185 ~~~~p~~f~~l~g~~~~k~~i~~~l~~~~~~~~~~~~~g~~~~rg~LL~GPPGtGKTsla~aiA~~l~~----------- 253 (431)
..-+|.+|++++|.+++++.+.+.+. . .|. .+. +||+||||||||++++++|+++..
T Consensus 6 ~kyrP~~~~~~vg~~~~~~~l~~~~~---~-------~~~-~~~-~ll~Gp~G~GKTtl~~~la~~l~~~~~g~i~~~~~ 73 (354)
T 1sxj_E 6 DKYRPKSLNALSHNEELTNFLKSLSD---Q-------PRD-LPH-LLLYGPNGTGKKTRCMALLESIFGPGVYRLKIDVR 73 (354)
T ss_dssp TTTCCCSGGGCCSCHHHHHHHHTTTT---C-------TTC-CCC-EEEECSTTSSHHHHHHTHHHHHSCTTCCC------
T ss_pred hccCCCCHHHhcCCHHHHHHHHHHHh---h-------CCC-CCe-EEEECCCCCCHHHHHHHHHHHHcCCCCCeEEecce
Confidence 44579999999999988777654330 1 122 233 999999999999999999996421
Q ss_pred ------------------CeEEecccCcC--ChHHHHHHHHHhhh---------------c---------ccchhhHHHH
Q 035603 254 ------------------DVYDLELTSVE--NNNELRSLLVDISS---------------K---------KKKSNVTLSG 289 (431)
Q Consensus 254 ------------------~i~~l~~~~~~--~~~~l~~l~~~~~~---------------~---------~~~~~~~~s~ 289 (431)
+++.++.+... ....+++.+..... . +.-+....+.
T Consensus 74 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~ls~l~~~~~vlilDE~~~L~~~~~~~ 153 (354)
T 1sxj_E 74 QFVTASNRKLELNVVSSPYHLEITPSDMGNNDRIVIQELLKEVAQMEQVDFQDSKDGLAHRYKCVIINEANSLTKDAQAA 153 (354)
T ss_dssp ------------CCEECSSEEEECCC----CCHHHHHHHHHHHTTTTC------------CCEEEEEECTTSSCHHHHHH
T ss_pred eecccccccceeeeecccceEEecHhhcCCcchHHHHHHHHHHHHhccccccccccccCCCCeEEEEeCccccCHHHHHH
Confidence 12334333221 11134444433211 1 2233455677
Q ss_pred HHHHhcCcccCCCCceEEEEecCCCCCCChhhhccCceeEEEEcCCCCHHHHHHHHHHhhchhcchh--HHHHHhHhccC
Q 035603 290 LLNCIGGLWSTCGGERIIVFTTNHVDKLDPALIRRGRMDKHIEMPYCCFEAFKVLAKNYLEIESHEL--FHEIGSLLGET 367 (431)
Q Consensus 290 lL~~ldg~~~~~~~~~ivI~TTN~~~~Ld~AllRpGRfd~~I~~~~p~~~~r~~i~~~~l~~~~~~~--~~~i~~l~~~~ 367 (431)
|+..++.. ..+..+|++||.++.+++++.+ |+ ..+.|++|+.++...+++.......... .+.+..++...
T Consensus 154 L~~~le~~----~~~~~~Il~t~~~~~l~~~l~s--R~-~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~i~~~~ 226 (354)
T 1sxj_E 154 LRRTMEKY----SKNIRLIMVCDSMSPIIAPIKS--QC-LLIRCPAPSDSEISTILSDVVTNERIQLETKDILKRIAQAS 226 (354)
T ss_dssp HHHHHHHS----TTTEEEEEEESCSCSSCHHHHT--TS-EEEECCCCCHHHHHHHHHHHHHHHTCEECCSHHHHHHHHHH
T ss_pred HHHHHHhh----cCCCEEEEEeCCHHHHHHHHHh--hc-eEEecCCcCHHHHHHHHHHHHHHcCCCCCcHHHHHHHHHHc
Confidence 78877754 2347899999999999999998 66 7899999999999999988775433221 22344444444
Q ss_pred CCCHHHHHHHh
Q 035603 368 DITPADVAENL 378 (431)
Q Consensus 368 ~~s~adI~~~l 378 (431)
+=++.++...+
T Consensus 227 ~G~~r~a~~~l 237 (354)
T 1sxj_E 227 NGNLRVSLLML 237 (354)
T ss_dssp TTCHHHHHHHH
T ss_pred CCCHHHHHHHH
Confidence 45566665554
No 64
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=99.33 E-value=1.4e-11 Score=122.55 Aligned_cols=150 Identities=16% Similarity=0.124 Sum_probs=100.6
Q ss_pred CCCCccccccChhhHHHHHHHHHHHHhCHHHHHHhCCCCCceeEEeCCCCCcHHHHHHHHHHHc---------CCCeEEe
Q 035603 188 HPATFDTLAMASKKKEAIKKDLIKFTEGKEYYAKIGKAWKRGYLLFGPPGTGKSTMIAAMANCL---------NYDVYDL 258 (431)
Q Consensus 188 ~p~~f~~l~g~~~~k~~i~~~l~~~~~~~~~~~~~g~~~~rg~LL~GPPGtGKTsla~aiA~~l---------~~~i~~l 258 (431)
+...+++++|.++..+.|.+.+...+. ...+++++|+||||||||++++++++.+ +..++.+
T Consensus 14 ~~~~p~~~~gr~~~~~~l~~~l~~~~~---------~~~~~~vll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~~i 84 (387)
T 2v1u_A 14 PDYVPDVLPHREAELRRLAEVLAPALR---------GEKPSNALLYGLTGTGKTAVARLVLRRLEARASSLGVLVKPIYV 84 (387)
T ss_dssp TTCCCSCCTTCHHHHHHHHHTTGGGTS---------SCCCCCEEECBCTTSSHHHHHHHHHHHHHHHHHHHTCCEEEEEE
T ss_pred CccCCCCCCCHHHHHHHHHHHHHHHHc---------CCCCCcEEEECCCCCCHHHHHHHHHHHHHHHHhccCCCeEEEEE
Confidence 334458899998888887765543322 1345789999999999999999999988 7888888
Q ss_pred cccCcCChH----------------------HH-HHHHHHhhhc--------ccc--------hhhHHHHHHHHhcCccc
Q 035603 259 ELTSVENNN----------------------EL-RSLLVDISSK--------KKK--------SNVTLSGLLNCIGGLWS 299 (431)
Q Consensus 259 ~~~~~~~~~----------------------~l-~~l~~~~~~~--------~~~--------~~~~~s~lL~~ldg~~~ 299 (431)
++....+.. .+ ..++...... ++. ....+..+++.++....
T Consensus 85 ~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlilDEi~~l~~~~~~~~~l~~l~~~~~~~~~ 164 (387)
T 2v1u_A 85 NARHRETPYRVASAIAEAVGVRVPFTGLSVGEVYERLVKRLSRLRGIYIIVLDEIDFLPKRPGGQDLLYRITRINQELGD 164 (387)
T ss_dssp ETTTSCSHHHHHHHHHHHHSCCCCSSCCCHHHHHHHHHHHHTTSCSEEEEEEETTTHHHHSTTHHHHHHHHHHGGGCC--
T ss_pred ECCcCCCHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHhccCCeEEEEEccHhhhcccCCCChHHHhHhhchhhcCC
Confidence 877643322 21 1222111111 111 22344444554443310
Q ss_pred CCCCceEEEEecCCC---CCCChhhhccCceeE-EEEcCCCCHHHHHHHHHHhhc
Q 035603 300 TCGGERIIVFTTNHV---DKLDPALIRRGRMDK-HIEMPYCCFEAFKVLAKNYLE 350 (431)
Q Consensus 300 ~~~~~~ivI~TTN~~---~~Ld~AllRpGRfd~-~I~~~~p~~~~r~~i~~~~l~ 350 (431)
+.++.+|+|||.+ +.+++++.+ ||.. .|++++++.++...+++..+.
T Consensus 165 --~~~~~~I~~t~~~~~~~~l~~~l~~--r~~~~~i~l~~l~~~~~~~il~~~~~ 215 (387)
T 2v1u_A 165 --RVWVSLVGITNSLGFVENLEPRVKS--SLGEVELVFPPYTAPQLRDILETRAE 215 (387)
T ss_dssp -----CEEEEECSCSTTSSSSCHHHHT--TTTSEECCBCCCCHHHHHHHHHHHHH
T ss_pred --CceEEEEEEECCCchHhhhCHHHHh--cCCCeEEeeCCCCHHHHHHHHHHHHH
Confidence 3458999999988 789999998 8864 899999999999999998875
No 65
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=99.32 E-value=1.5e-12 Score=115.95 Aligned_cols=129 Identities=20% Similarity=0.247 Sum_probs=86.7
Q ss_pred cCCCCccccccChhhHHHHHHHHHHHHhCHHHHHHhCCCCCceeEEeCCCCCcHHHHHHHHHHHc----------CCCeE
Q 035603 187 EHPATFDTLAMASKKKEAIKKDLIKFTEGKEYYAKIGKAWKRGYLLFGPPGTGKSTMIAAMANCL----------NYDVY 256 (431)
Q Consensus 187 ~~p~~f~~l~g~~~~k~~i~~~l~~~~~~~~~~~~~g~~~~rg~LL~GPPGtGKTsla~aiA~~l----------~~~i~ 256 (431)
-.|.+|++++|.++..+.+.+.+. . ..++++||+||||||||++++++|+.+ +.+++
T Consensus 16 ~~~~~~~~~~g~~~~~~~l~~~l~----~---------~~~~~vll~G~~G~GKT~la~~~~~~~~~~~~~~~~~~~~~~ 82 (187)
T 2p65_A 16 ARAGKLDPVIGRDTEIRRAIQILS----R---------RTKNNPILLGDPGVGKTAIVEGLAIKIVQGDVPDSLKGRKLV 82 (187)
T ss_dssp HHTTCSCCCCSCHHHHHHHHHHHT----S---------SSSCEEEEESCGGGCHHHHHHHHHHHHHTTCSCTTTTTCEEE
T ss_pred HhccccchhhcchHHHHHHHHHHh----C---------CCCCceEEECCCCCCHHHHHHHHHHHHHhcCCcchhcCCeEE
Confidence 347789999999887776655432 1 235689999999999999999999987 77788
Q ss_pred EecccCcC----C----hHHHHHHHHHhhhc--------ccc------------hhhHHHHHHHHhcCcccCCCCceEEE
Q 035603 257 DLELTSVE----N----NNELRSLLVDISSK--------KKK------------SNVTLSGLLNCIGGLWSTCGGERIIV 308 (431)
Q Consensus 257 ~l~~~~~~----~----~~~l~~l~~~~~~~--------~~~------------~~~~~s~lL~~ldg~~~~~~~~~ivI 308 (431)
.+++..+. . ...+..++...... ++. .......|+..++. ..+++|
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~iDe~~~l~~~~~~~~~~~~~~~~l~~~~~~------~~~~ii 156 (187)
T 2p65_A 83 SLDLSSLIAGAKYRGDFEERLKSILKEVQDAEGQVVMFIDEIHTVVGAGAVAEGALDAGNILKPMLAR------GELRCI 156 (187)
T ss_dssp EECHHHHHHHCCSHHHHHHHHHHHHHHHHHTTTSEEEEETTGGGGSSSSSSCTTSCCTHHHHHHHHHT------TCSCEE
T ss_pred EEeHHHhhcCCCchhHHHHHHHHHHHHHHhcCCceEEEEeCHHHhcccccccccchHHHHHHHHHHhc------CCeeEE
Confidence 87765431 1 11244444333221 110 02233334444432 347899
Q ss_pred EecCCCC-----CCChhhhccCceeEEEEcCCCC
Q 035603 309 FTTNHVD-----KLDPALIRRGRMDKHIEMPYCC 337 (431)
Q Consensus 309 ~TTN~~~-----~Ld~AllRpGRfd~~I~~~~p~ 337 (431)
+|||.++ .+|+++.+ ||+. |+++.|+
T Consensus 157 ~~~~~~~~~~~~~~~~~l~~--R~~~-i~i~~p~ 187 (187)
T 2p65_A 157 GATTVSEYRQFIEKDKALER--RFQQ-ILVEQPS 187 (187)
T ss_dssp EEECHHHHHHHTTTCHHHHH--HEEE-EECCSCC
T ss_pred EecCHHHHHHHHhccHHHHH--hcCc-ccCCCCC
Confidence 9999775 68999999 9995 9999986
No 66
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=99.31 E-value=4.4e-11 Score=119.43 Aligned_cols=143 Identities=13% Similarity=0.176 Sum_probs=98.8
Q ss_pred cccccChhhHHHHHHHHHHHHhCHHHHHHhCCCCCceeEEeCCCCCcHHHHHHHHHHHc-----------CCCeEEeccc
Q 035603 193 DTLAMASKKKEAIKKDLIKFTEGKEYYAKIGKAWKRGYLLFGPPGTGKSTMIAAMANCL-----------NYDVYDLELT 261 (431)
Q Consensus 193 ~~l~g~~~~k~~i~~~l~~~~~~~~~~~~~g~~~~rg~LL~GPPGtGKTsla~aiA~~l-----------~~~i~~l~~~ 261 (431)
++++|.++..+.|.+.+...... ..+++++|+||||||||++++++++++ +..++.+++.
T Consensus 20 ~~l~gr~~~~~~l~~~l~~~~~~---------~~~~~vll~G~~G~GKT~la~~l~~~~~~~~~~~~~~~~~~~~~i~~~ 90 (384)
T 2qby_B 20 KEIPFREDILRDAAIAIRYFVKN---------EVKFSNLFLGLTGTGKTFVSKYIFNEIEEVKKEDEEYKDVKQAYVNCR 90 (384)
T ss_dssp SSCTTCHHHHHHHHHHHHHHHTT---------CCCCEEEEEECTTSSHHHHHHHHHHHHHHHHHHSSSSTTCEEEEEEHH
T ss_pred CCCCChHHHHHHHHHHHHHHHcC---------CCCCcEEEECCCCCCHHHHHHHHHHHHHHHhhhhcCCCCceEEEEECc
Confidence 78999999999988877665543 235689999999999999999999988 8899999876
Q ss_pred CcC-ChHHH-HH-----------------------HHHHhhhc------ccchhhHH---HHH-HHHhcCcccCCCCceE
Q 035603 262 SVE-NNNEL-RS-----------------------LLVDISSK------KKKSNVTL---SGL-LNCIGGLWSTCGGERI 306 (431)
Q Consensus 262 ~~~-~~~~l-~~-----------------------l~~~~~~~------~~~~~~~~---s~l-L~~ldg~~~~~~~~~i 306 (431)
... +...+ .. ++...... ++...... ..+ +..+-... .++.
T Consensus 91 ~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~vlilDEi~~l~~~~~~~~~l~~l~~~~----~~~~ 166 (384)
T 2qby_B 91 EVGGTPQAVLSSLAGKLTGFSVPKHGINLGEYIDKIKNGTRNIRAIIYLDEVDTLVKRRGGDIVLYQLLRSD----ANIS 166 (384)
T ss_dssp HHCSCHHHHHHHHHHHHHCSCCCSSSSCTHHHHHHHHHHHSSSCEEEEEETTHHHHHSTTSHHHHHHHHTSS----SCEE
T ss_pred cCCCCHHHHHHHHHHHhcCCCCCCCCCCHHHHHHHHHHHhccCCCEEEEECHHHhccCCCCceeHHHHhcCC----cceE
Confidence 543 22211 11 11111111 11111110 111 22222221 3488
Q ss_pred EEEecCCC---CCCChhhhccCceeEEEEcCCCCHHHHHHHHHHhhc
Q 035603 307 IVFTTNHV---DKLDPALIRRGRMDKHIEMPYCCFEAFKVLAKNYLE 350 (431)
Q Consensus 307 vI~TTN~~---~~Ld~AllRpGRfd~~I~~~~p~~~~r~~i~~~~l~ 350 (431)
+|+|||.+ +.+++++.+ ||...|+|++++.++...+++.++.
T Consensus 167 iI~~t~~~~~~~~l~~~l~s--r~~~~i~l~~l~~~~~~~il~~~~~ 211 (384)
T 2qby_B 167 VIMISNDINVRDYMEPRVLS--SLGPSVIFKPYDAEQLKFILSKYAE 211 (384)
T ss_dssp EEEECSSTTTTTTSCHHHHH--TCCCEEEECCCCHHHHHHHHHHHHH
T ss_pred EEEEECCCchHhhhCHHHHh--cCCCeEEECCCCHHHHHHHHHHHHH
Confidence 99999987 789999999 8877999999999999999998764
No 67
>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*
Probab=99.28 E-value=1.3e-10 Score=115.04 Aligned_cols=117 Identities=15% Similarity=0.165 Sum_probs=88.0
Q ss_pred CCceeEEeCCCCCcHHHHHHHHHHHcCC------------------------CeEEeccc---CcCChHHHHHHHHHhhh
Q 035603 226 WKRGYLLFGPPGTGKSTMIAAMANCLNY------------------------DVYDLELT---SVENNNELRSLLVDISS 278 (431)
Q Consensus 226 ~~rg~LL~GPPGtGKTsla~aiA~~l~~------------------------~i~~l~~~---~~~~~~~l~~l~~~~~~ 278 (431)
.+.+||||||||||||++|+++|+.+.+ +++.++.. .-.+.+.+++++.....
T Consensus 23 ~~~a~L~~G~~G~GKt~~a~~la~~l~~~~~~~~~~c~~c~~c~~~~~~~~~d~~~~~~~~~~~~~~i~~ir~l~~~~~~ 102 (334)
T 1a5t_A 23 GHHALLIQALPGMGDDALIYALSRYLLCQQPQGHKSCGHCRGCQLMQAGTHPDYYTLAPEKGKNTLGVDAVREVTEKLNE 102 (334)
T ss_dssp CCSEEEEECCTTSCHHHHHHHHHHHHTCSSCBTTBCCSCSHHHHHHHHTCCTTEEEECCCTTCSSBCHHHHHHHHHHTTS
T ss_pred cceeEEEECCCCchHHHHHHHHHHHHhCCCCCCCCCCCCCHHHHHHhcCCCCCEEEEeccccCCCCCHHHHHHHHHHHhh
Confidence 4568999999999999999999998764 34555553 22244567777665432
Q ss_pred c--------------ccchhhHHHHHHHHhcCcccCCCCceEEEEecCCCCCCChhhhccCceeEEEEcCCCCHHHHHHH
Q 035603 279 K--------------KKKSNVTLSGLLNCIGGLWSTCGGERIIVFTTNHVDKLDPALIRRGRMDKHIEMPYCCFEAFKVL 344 (431)
Q Consensus 279 ~--------------~~~~~~~~s~lL~~ldg~~~~~~~~~ivI~TTN~~~~Ld~AllRpGRfd~~I~~~~p~~~~r~~i 344 (431)
. +.-.....+.||..++. +...+++|++||.++.|+|++++ |. ..++|+.|+.++...+
T Consensus 103 ~~~~~~~kvviIdead~l~~~a~naLLk~lEe----p~~~~~~Il~t~~~~~l~~ti~S--Rc-~~~~~~~~~~~~~~~~ 175 (334)
T 1a5t_A 103 HARLGGAKVVWVTDAALLTDAAANALLKTLEE----PPAETWFFLATREPERLLATLRS--RC-RLHYLAPPPEQYAVTW 175 (334)
T ss_dssp CCTTSSCEEEEESCGGGBCHHHHHHHHHHHTS----CCTTEEEEEEESCGGGSCHHHHT--TS-EEEECCCCCHHHHHHH
T ss_pred ccccCCcEEEEECchhhcCHHHHHHHHHHhcC----CCCCeEEEEEeCChHhCcHHHhh--cc-eeeeCCCCCHHHHHHH
Confidence 2 22334567889999884 34558999999999999999999 55 4799999999998888
Q ss_pred HHHhh
Q 035603 345 AKNYL 349 (431)
Q Consensus 345 ~~~~l 349 (431)
+....
T Consensus 176 L~~~~ 180 (334)
T 1a5t_A 176 LSREV 180 (334)
T ss_dssp HHHHC
T ss_pred HHHhc
Confidence 87765
No 68
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=99.26 E-value=2.3e-11 Score=125.05 Aligned_cols=150 Identities=16% Similarity=0.259 Sum_probs=96.0
Q ss_pred eccCCCCccccc-cChhhHHHHHHHHHHHHhCHHHHHHhCCCCCceeEEeCCCCCcHHHHHHHHHHHc-----CCCeEEe
Q 035603 185 YFEHPATFDTLA-MASKKKEAIKKDLIKFTEGKEYYAKIGKAWKRGYLLFGPPGTGKSTMIAAMANCL-----NYDVYDL 258 (431)
Q Consensus 185 ~~~~p~~f~~l~-g~~~~k~~i~~~l~~~~~~~~~~~~~g~~~~rg~LL~GPPGtGKTsla~aiA~~l-----~~~i~~l 258 (431)
++.+..+|++++ |..... ....+..+...+ |. ..+++||||||||||+|+++||+++ +.+++.+
T Consensus 97 ~l~~~~tfd~fv~g~~n~~--a~~~~~~~a~~~------~~--~~~lll~Gp~G~GKTtLa~aia~~l~~~~~~~~v~~v 166 (440)
T 2z4s_A 97 PLNPDYTFENFVVGPGNSF--AYHAALEVAKHP------GR--YNPLFIYGGVGLGKTHLLQSIGNYVVQNEPDLRVMYI 166 (440)
T ss_dssp CCCTTCSGGGCCCCTTTHH--HHHHHHHHHHST------TS--SCCEEEECSSSSSHHHHHHHHHHHHHHHCCSSCEEEE
T ss_pred CCCCCCChhhcCCCCchHH--HHHHHHHHHhCC------CC--CCeEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEe
Confidence 355557899987 544332 223344444332 22 5689999999999999999999988 8888888
Q ss_pred cccCcCChHHHHH--------HHHHhhh-c------cc-----chhhHHHHHHHHhcCcccCCCCceEEEEecCCCCC--
Q 035603 259 ELTSVENNNELRS--------LLVDISS-K------KK-----KSNVTLSGLLNCIGGLWSTCGGERIIVFTTNHVDK-- 316 (431)
Q Consensus 259 ~~~~~~~~~~l~~--------l~~~~~~-~------~~-----~~~~~~s~lL~~ldg~~~~~~~~~ivI~TTN~~~~-- 316 (431)
++..+. ..+.. .|..... . ++ ........|+..++.+... +..+||.|.+.+..
T Consensus 167 ~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~vL~IDEi~~l~~~~~~q~~l~~~l~~l~~~--~~~iIitt~~~~~~l~ 242 (440)
T 2z4s_A 167 TSEKFL--NDLVDSMKEGKLNEFREKYRKKVDILLIDDVQFLIGKTGVQTELFHTFNELHDS--GKQIVICSDREPQKLS 242 (440)
T ss_dssp EHHHHH--HHHHHHHHTTCHHHHHHHHTTTCSEEEEECGGGGSSCHHHHHHHHHHHHHHHTT--TCEEEEEESSCGGGCS
T ss_pred eHHHHH--HHHHHHHHcccHHHHHHHhcCCCCEEEEeCcccccCChHHHHHHHHHHHHHHHC--CCeEEEEECCCHHHHH
Confidence 876541 11111 1111111 1 11 1113455666666554322 23555555555554
Q ss_pred -CChhhhccCcee--EEEEcCCCCHHHHHHHHHHhhc
Q 035603 317 -LDPALIRRGRMD--KHIEMPYCCFEAFKVLAKNYLE 350 (431)
Q Consensus 317 -Ld~AllRpGRfd--~~I~~~~p~~~~r~~i~~~~l~ 350 (431)
++++|++ ||+ ..+.++.|+.+++..+++..+.
T Consensus 243 ~l~~~L~s--R~~~g~~i~l~~p~~e~r~~iL~~~~~ 277 (440)
T 2z4s_A 243 EFQDRLVS--RFQMGLVAKLEPPDEETRKSIARKMLE 277 (440)
T ss_dssp SCCHHHHH--HHHSSBCCBCCCCCHHHHHHHHHHHHH
T ss_pred HHHHHHHh--hccCCeEEEeCCCCHHHHHHHHHHHHH
Confidence 8999999 886 8899999999999999988775
No 69
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=99.26 E-value=1e-10 Score=116.77 Aligned_cols=153 Identities=12% Similarity=0.033 Sum_probs=105.4
Q ss_pred CCccccccChhhHHHHHHHHHHHHhCHHHHHHhCCCCCceeEEeCCCCCcHHHHHHHHHHHc----CCCeEEecccCcCC
Q 035603 190 ATFDTLAMASKKKEAIKKDLIKFTEGKEYYAKIGKAWKRGYLLFGPPGTGKSTMIAAMANCL----NYDVYDLELTSVEN 265 (431)
Q Consensus 190 ~~f~~l~g~~~~k~~i~~~l~~~~~~~~~~~~~g~~~~rg~LL~GPPGtGKTsla~aiA~~l----~~~i~~l~~~~~~~ 265 (431)
..+++++|.++..+.|.+.+....... .+..+.++|+||||||||++++++++.+ +..++.+++....+
T Consensus 14 ~~p~~l~gr~~~~~~l~~~l~~~~~~~-------~~~~~~~li~G~~G~GKTtl~~~l~~~~~~~~~~~~~~i~~~~~~~ 86 (389)
T 1fnn_A 14 YVPKRLPHREQQLQQLDILLGNWLRNP-------GHHYPRATLLGRPGTGKTVTLRKLWELYKDKTTARFVYINGFIYRN 86 (389)
T ss_dssp CCCSCCTTCHHHHHHHHHHHHHHHHST-------TSSCCEEEEECCTTSSHHHHHHHHHHHHTTSCCCEEEEEETTTCCS
T ss_pred cCCCCCCChHHHHHHHHHHHHHHHcCC-------CCCCCeEEEECCCCCCHHHHHHHHHHHHhhhcCeeEEEEeCccCCC
Confidence 344889999999998888776655431 1122389999999999999999999998 67788888765433
Q ss_pred hHH-HHHHHH-------------------------Hhhhc--------ccchhhHHHHHHHHhcCcccCCCCceEEEEec
Q 035603 266 NNE-LRSLLV-------------------------DISSK--------KKKSNVTLSGLLNCIGGLWSTCGGERIIVFTT 311 (431)
Q Consensus 266 ~~~-l~~l~~-------------------------~~~~~--------~~~~~~~~s~lL~~ldg~~~~~~~~~ivI~TT 311 (431)
... +..++. ..... +......+..|+..++........++.+|++|
T Consensus 87 ~~~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlilDE~~~l~~~~~~~L~~~~~~~~~~~~~~~~iI~~~ 166 (389)
T 1fnn_A 87 FTAIIGEIARSLNIPFPRRGLSRDEFLALLVEHLRERDLYMFLVLDDAFNLAPDILSTFIRLGQEADKLGAFRIALVIVG 166 (389)
T ss_dssp HHHHHHHHHHHTTCCCCSSCCCHHHHHHHHHHHHHHTTCCEEEEEETGGGSCHHHHHHHHHHTTCHHHHSSCCEEEEEEE
T ss_pred HHHHHHHHHHHhCccCCCCCCCHHHHHHHHHHHHhhcCCeEEEEEECccccchHHHHHHHHHHHhCCCCCcCCEEEEEEE
Confidence 211 111111 11111 12234566777777765432111348899999
Q ss_pred CCC---CCCChhhhccCceeE-EEEcCCCCHHHHHHHHHHhhch
Q 035603 312 NHV---DKLDPALIRRGRMDK-HIEMPYCCFEAFKVLAKNYLEI 351 (431)
Q Consensus 312 N~~---~~Ld~AllRpGRfd~-~I~~~~p~~~~r~~i~~~~l~~ 351 (431)
|.+ +.+++.+.+ |+.. .|++++++.++...++...+..
T Consensus 167 ~~~~~~~~l~~~~~~--r~~~~~i~~~pl~~~~~~~~l~~~~~~ 208 (389)
T 1fnn_A 167 HNDAVLNNLDPSTRG--IMGKYVIRFSPYTKDQIFDILLDRAKA 208 (389)
T ss_dssp SSTHHHHTSCHHHHH--HHTTCEEECCCCBHHHHHHHHHHHHHH
T ss_pred CCchHHHHhCHHhhh--cCCCceEEeCCCCHHHHHHHHHHHHHh
Confidence 988 789999988 7765 8999999999999998887653
No 70
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=99.24 E-value=7.4e-11 Score=130.77 Aligned_cols=141 Identities=18% Similarity=0.246 Sum_probs=96.5
Q ss_pred CCCCccccccChhhHHHHHHHHHHHHhCHHHHHHhCCCCCceeEEeCCCCCcHHHHHHHHHHHc----------CCCeEE
Q 035603 188 HPATFDTLAMASKKKEAIKKDLIKFTEGKEYYAKIGKAWKRGYLLFGPPGTGKSTMIAAMANCL----------NYDVYD 257 (431)
Q Consensus 188 ~p~~f~~l~g~~~~k~~i~~~l~~~~~~~~~~~~~g~~~~rg~LL~GPPGtGKTsla~aiA~~l----------~~~i~~ 257 (431)
.|.+|+.++|.++..+.+.+.+ .. ..++++||+||||||||++++++|+.+ +.+++.
T Consensus 165 r~~~ld~viGr~~~i~~l~~~l----~~---------~~~~~vlL~G~pG~GKT~la~~la~~l~~~~~p~~l~~~~~~~ 231 (854)
T 1qvr_A 165 AEGKLDPVIGRDEEIRRVIQIL----LR---------RTKNNPVLIGEPGVGKTAIVEGLAQRIVKGDVPEGLKGKRIVS 231 (854)
T ss_dssp HTTCSCCCCSCHHHHHHHHHHH----HC---------SSCCCCEEEECTTSCHHHHHHHHHHHHHHTCSCTTSTTCEEEE
T ss_pred hcCCCcccCCcHHHHHHHHHHH----hc---------CCCCceEEEcCCCCCHHHHHHHHHHHHhcCCCchhhcCCeEEE
Confidence 4778999999987777766543 11 235689999999999999999999987 888999
Q ss_pred ecccCcCC--------hHHHHHHHHHhhhc--------ccch-----------hhHHHHHHHHhcCcccCCCCceEEEEe
Q 035603 258 LELTSVEN--------NNELRSLLVDISSK--------KKKS-----------NVTLSGLLNCIGGLWSTCGGERIIVFT 310 (431)
Q Consensus 258 l~~~~~~~--------~~~l~~l~~~~~~~--------~~~~-----------~~~~s~lL~~ldg~~~~~~~~~ivI~T 310 (431)
++++.+.. ...+..++...... +... ....+.|...++ .+++.+|++
T Consensus 232 l~~~~l~~g~~~~g~~~~~l~~~~~~~~~~~~~~iL~IDEi~~l~~~~~~~g~~~~~~~L~~~l~------~~~i~~I~a 305 (854)
T 1qvr_A 232 LQMGSLLAGAKYRGEFEERLKAVIQEVVQSQGEVILFIDELHTVVGAGKAEGAVDAGNMLKPALA------RGELRLIGA 305 (854)
T ss_dssp ECC-----------CHHHHHHHHHHHHHTTCSSEEEEECCC-------------------HHHHH------TTCCCEEEE
T ss_pred eehHHhhccCccchHHHHHHHHHHHHHHhcCCCeEEEEecHHHHhccCCccchHHHHHHHHHHHh------CCCeEEEEe
Confidence 98877632 23466666655432 1110 112223333332 134778898
Q ss_pred cCCCC----CCChhhhccCceeEEEEcCCCCHHHHHHHHHHhhc
Q 035603 311 TNHVD----KLDPALIRRGRMDKHIEMPYCCFEAFKVLAKNYLE 350 (431)
Q Consensus 311 TN~~~----~Ld~AllRpGRfd~~I~~~~p~~~~r~~i~~~~l~ 350 (431)
||.++ .+|++|.| ||+. |.++.|+.+++..|++.++.
T Consensus 306 t~~~~~~~~~~d~aL~r--Rf~~-i~l~~p~~~e~~~iL~~~~~ 346 (854)
T 1qvr_A 306 TTLDEYREIEKDPALER--RFQP-VYVDEPTVEETISILRGLKE 346 (854)
T ss_dssp ECHHHHHHHTTCTTTCS--CCCC-EEECCCCHHHHHHHHHHHHH
T ss_pred cCchHHhhhccCHHHHh--CCce-EEeCCCCHHHHHHHHHhhhh
Confidence 88775 58999999 9986 99999999999999987654
No 71
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=99.23 E-value=2.8e-10 Score=111.79 Aligned_cols=176 Identities=9% Similarity=0.091 Sum_probs=109.1
Q ss_pred CCCceeEEeCCCCCcHHHHHHHHHHHc----------CCCeEEecccCcCCh----------------------HHHHHH
Q 035603 225 AWKRGYLLFGPPGTGKSTMIAAMANCL----------NYDVYDLELTSVENN----------------------NELRSL 272 (431)
Q Consensus 225 ~~~rg~LL~GPPGtGKTsla~aiA~~l----------~~~i~~l~~~~~~~~----------------------~~l~~l 272 (431)
..+.+++||||||||||++++++++++ ++.++.+|+..+.+. ..+..+
T Consensus 43 ~~~~~lli~GpPGTGKT~~v~~v~~~L~~~~~~~~~~~~~~v~INc~~~~t~~~~~~~I~~~L~g~~~~~~~~~~~L~~~ 122 (318)
T 3te6_A 43 SQNKLFYITNADDSTKFQLVNDVMDELITSSARKELPIFDYIHIDALELAGMDALYEKIWFAISKENLCGDISLEALNFY 122 (318)
T ss_dssp TCCCEEEEECCCSHHHHHHHHHHHHHHHHTTTTTSSCCEEEEEEETTCCC--HHHHHHHHHHHSCCC--CCCCHHHHHHH
T ss_pred CCCCeEEEECCCCCCHHHHHHHHHHHHHHHhhhccCCceEEEEEeccccCCHHHHHHHHHHHhcCCCCCchHHHHHHHHH
Confidence 346789999999999999999999998 456778887665332 234555
Q ss_pred HHHh---hhc---------cc-chhhHHHHHHHHhcCcccCCCCceEEEEecCCCCCC----ChhhhccCcee-EEEEcC
Q 035603 273 LVDI---SSK---------KK-KSNVTLSGLLNCIGGLWSTCGGERIIVFTTNHVDKL----DPALIRRGRMD-KHIEMP 334 (431)
Q Consensus 273 ~~~~---~~~---------~~-~~~~~~s~lL~~ldg~~~~~~~~~ivI~TTN~~~~L----d~AllRpGRfd-~~I~~~ 334 (431)
|... ... +. .....+..|++... .....++||+++|..+.. ++++.+ ||. ..|.|+
T Consensus 123 f~~~~~~~~~~~ii~lDE~d~l~~q~~L~~l~~~~~----~~~s~~~vI~i~n~~d~~~~~L~~~v~S--R~~~~~i~F~ 196 (318)
T 3te6_A 123 ITNVPKAKKRKTLILIQNPENLLSEKILQYFEKWIS----SKNSKLSIICVGGHNVTIREQINIMPSL--KAHFTEIKLN 196 (318)
T ss_dssp HHHSCGGGSCEEEEEEECCSSSCCTHHHHHHHHHHH----CSSCCEEEEEECCSSCCCHHHHHTCHHH--HTTEEEEECC
T ss_pred HHHhhhccCCceEEEEecHHHhhcchHHHHHHhccc----ccCCcEEEEEEecCcccchhhcchhhhc--cCCceEEEeC
Confidence 5543 111 11 12334444444322 233458999999998754 445556 776 689999
Q ss_pred CCCHHHHHHHHHHhhchhcchhH---------------H--HHHh----Hhc-cCCCCHHHHHHHhcc--cCCCCCHHHH
Q 035603 335 YCCFEAFKVLAKNYLEIESHELF---------------H--EIGS----LLG-ETDITPADVAENLMP--KSDEDDAGTC 390 (431)
Q Consensus 335 ~p~~~~r~~i~~~~l~~~~~~~~---------------~--~i~~----l~~-~~~~s~adI~~~l~~--~~~~~~~~~~ 390 (431)
+++.++...|++..+.......+ . .-+. +.. ..-++++-|. ++.. +...+|++.|
T Consensus 197 pYt~~el~~Il~~Rl~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ai~-~~A~~vA~~~GD~R~A 275 (318)
T 3te6_A 197 KVDKNELQQMIITRLKSLLKPFHVKVNDKKEMTIYNNIREGQNQKIPDNVIVINHKINNKITQ-LIAKNVANVSGSTEKA 275 (318)
T ss_dssp CCCHHHHHHHHHHHHHHHCCCEEEEECTTCCEEECCCC--------CTTEEEECEECCHHHHH-HHHHHHHHHHCSHHHH
T ss_pred CCCHHHHHHHHHHHHHhhhccccccccccccccccccccccccccccccccccccccCHHHHH-HHHHHHHhhCChHHHH
Confidence 99999999999988754221100 0 0000 000 0024666664 4333 1357899999
Q ss_pred HHHHHHHHHHHHHHHHh
Q 035603 391 LKNLIEALKAAKEKAKK 407 (431)
Q Consensus 391 l~~l~~~l~~~~~~~~~ 407 (431)
++-+..|.+....+..+
T Consensus 276 l~ilr~A~~~ae~e~~~ 292 (318)
T 3te6_A 276 FKICEAAVEISKKDFVR 292 (318)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHh
Confidence 99988888776655443
No 72
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=99.22 E-value=5e-11 Score=113.58 Aligned_cols=147 Identities=14% Similarity=0.133 Sum_probs=92.1
Q ss_pred CCccccccChhhHHHHHHHHHHHHhCHHHHHHhCCCCCceeEEeCCCCCcHHHHHHHHHHHcC---CCeEEecccCcCCh
Q 035603 190 ATFDTLAMASKKKEAIKKDLIKFTEGKEYYAKIGKAWKRGYLLFGPPGTGKSTMIAAMANCLN---YDVYDLELTSVENN 266 (431)
Q Consensus 190 ~~f~~l~g~~~~k~~i~~~l~~~~~~~~~~~~~g~~~~rg~LL~GPPGtGKTsla~aiA~~l~---~~i~~l~~~~~~~~ 266 (431)
.+|++++|.+...+.+.+.+..... .+.++||+||||||||++|+++++.++ .+++.++++.+..
T Consensus 3 ~~f~~~ig~~~~~~~~~~~~~~~~~-----------~~~~vll~G~~GtGKt~la~~i~~~~~~~~~~~~~v~~~~~~~- 70 (265)
T 2bjv_A 3 EYKDNLLGEANSFLEVLEQVSHLAP-----------LDKPVLIIGERGTGKELIASRLHYLSSRWQGPFISLNCAALNE- 70 (265)
T ss_dssp -------CCCHHHHHHHHHHHHHTT-----------SCSCEEEECCTTSCHHHHHHHHHHTSTTTTSCEEEEEGGGSCH-
T ss_pred cccccceeCCHHHHHHHHHHHHHhC-----------CCCCEEEECCCCCcHHHHHHHHHHhcCccCCCeEEEecCCCCh-
Confidence 4689999999998888877765443 246899999999999999999999885 6799999887632
Q ss_pred HHHH-HHHH------------------Hhhhc-------ccchhhHHHHHHHHhcCcc-------cCCCCceEEEEecCC
Q 035603 267 NELR-SLLV------------------DISSK-------KKKSNVTLSGLLNCIGGLW-------STCGGERIIVFTTNH 313 (431)
Q Consensus 267 ~~l~-~l~~------------------~~~~~-------~~~~~~~~s~lL~~ldg~~-------~~~~~~~ivI~TTN~ 313 (431)
..+. .+|. .+... +.........|+..++.-. ......+.||+|||.
T Consensus 71 ~~~~~~l~g~~~~~~~g~~~~~~~~l~~a~~~~l~lDEi~~l~~~~q~~Ll~~l~~~~~~~~g~~~~~~~~~~iI~atn~ 150 (265)
T 2bjv_A 71 NLLDSELFGHEAGAFTGAQKRHPGRFERADGGTLFLDELATAPMMVQEKLLRVIEYGELERVGGSQPLQVNVRLVCATNA 150 (265)
T ss_dssp HHHHHHHHCCC---------CCCCHHHHTTTSEEEEESGGGSCHHHHHHHHHHHHHCEECCCCC--CEECCCEEEEEESS
T ss_pred hHHHHHhcCCcccccccccccccchhhhcCCcEEEEechHhcCHHHHHHHHHHHHhCCeecCCCcccccCCeEEEEecCc
Confidence 2222 2221 11111 2223345566777776321 001124678999997
Q ss_pred C-------CCCChhhhccCcee-EEEEcCCCCH--HHHHHHHHHhhc
Q 035603 314 V-------DKLDPALIRRGRMD-KHIEMPYCCF--EAFKVLAKNYLE 350 (431)
Q Consensus 314 ~-------~~Ld~AllRpGRfd-~~I~~~~p~~--~~r~~i~~~~l~ 350 (431)
. ..++++|.+ ||+ ..|.+|..+. +....++++++.
T Consensus 151 ~~~~~~~~~~~~~~L~~--Rl~~~~i~lp~L~~R~~di~~l~~~~l~ 195 (265)
T 2bjv_A 151 DLPAMVNEGTFRADLLD--ALAFDVVQLPPLRERESDIMLMAEYFAI 195 (265)
T ss_dssp CHHHHHHHTSSCHHHHH--HHCSEEEECCCGGGCHHHHHHHHHHHHH
T ss_pred CHHHHHHcCCccHHHHH--hhcCcEEeCCChhhhhHHHHHHHHHHHH
Confidence 4 357899998 885 5677776653 556666666653
No 73
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=99.21 E-value=1.7e-10 Score=126.18 Aligned_cols=146 Identities=21% Similarity=0.260 Sum_probs=100.1
Q ss_pred cCCCCccccccChhhHHHHHHHHHHHHhCHHHHHHhCCCCCceeEEeCCCCCcHHHHHHHHHHHc----------CCCeE
Q 035603 187 EHPATFDTLAMASKKKEAIKKDLIKFTEGKEYYAKIGKAWKRGYLLFGPPGTGKSTMIAAMANCL----------NYDVY 256 (431)
Q Consensus 187 ~~p~~f~~l~g~~~~k~~i~~~l~~~~~~~~~~~~~g~~~~rg~LL~GPPGtGKTsla~aiA~~l----------~~~i~ 256 (431)
-.|..|+.++|.++..+.+.+.+. ...+.++||+||||||||++++++|+.+ +..++
T Consensus 180 ~~~~~~d~~iGr~~~i~~l~~~l~-------------~~~~~~vlL~G~~GtGKT~la~~la~~l~~~~v~~~~~~~~~~ 246 (758)
T 1r6b_X 180 ARVGGIDPLIGREKELERAIQVLC-------------RRRKNNPLLVGESGVGKTAIAEGLAWRIVQGDVPEVMADCTIY 246 (758)
T ss_dssp HHTTCSCCCCSCHHHHHHHHHHHT-------------SSSSCEEEEECCTTSSHHHHHHHHHHHHHHTCSCGGGTTCEEE
T ss_pred HhcCCCCCccCCHHHHHHHHHHHh-------------ccCCCCeEEEcCCCCCHHHHHHHHHHHHHhCCCChhhcCCEEE
Confidence 356789999999888777655432 1246789999999999999999999987 66777
Q ss_pred EecccCcCC--------hHHHHHHHHHhhhc-------ccchh--------hHHHHHHHHhcCcccCCCCceEEEEecCC
Q 035603 257 DLELTSVEN--------NNELRSLLVDISSK-------KKKSN--------VTLSGLLNCIGGLWSTCGGERIIVFTTNH 313 (431)
Q Consensus 257 ~l~~~~~~~--------~~~l~~l~~~~~~~-------~~~~~--------~~~s~lL~~ldg~~~~~~~~~ivI~TTN~ 313 (431)
.+++..+.. ...+..++...... +.... .......+.+..+... +++.+|++||.
T Consensus 247 ~~~~~~l~~~~~~~g~~e~~l~~~~~~~~~~~~~iL~IDEi~~l~~~~~~~~~~~~~~~~L~~~l~~--~~~~~I~at~~ 324 (758)
T 1r6b_X 247 SLDIGSLLAGTKYRGDFEKRFKALLKQLEQDTNSILFIDEIHTIIGAGAASGGQVDAANLIKPLLSS--GKIRVIGSTTY 324 (758)
T ss_dssp ECCCC---CCCCCSSCHHHHHHHHHHHHSSSSCEEEEETTTTTTTTSCCSSSCHHHHHHHHSSCSSS--CCCEEEEEECH
T ss_pred EEcHHHHhccccccchHHHHHHHHHHHHHhcCCeEEEEechHHHhhcCCCCcchHHHHHHHHHHHhC--CCeEEEEEeCc
Confidence 777665421 24566777655432 11110 0122334444444322 34788888886
Q ss_pred C-----CCCChhhhccCceeEEEEcCCCCHHHHHHHHHHhhc
Q 035603 314 V-----DKLDPALIRRGRMDKHIEMPYCCFEAFKVLAKNYLE 350 (431)
Q Consensus 314 ~-----~~Ld~AllRpGRfd~~I~~~~p~~~~r~~i~~~~l~ 350 (431)
+ -.+|++|.| ||+ .|.++.|+.+++..+++....
T Consensus 325 ~~~~~~~~~d~aL~~--Rf~-~i~v~~p~~~e~~~il~~l~~ 363 (758)
T 1r6b_X 325 QEFSNIFEKDRALAR--RFQ-KIDITEPSIEETVQIINGLKP 363 (758)
T ss_dssp HHHHCCCCCTTSSGG--GEE-EEECCCCCHHHHHHHHHHHHH
T ss_pred hHHhhhhhcCHHHHh--Cce-EEEcCCCCHHHHHHHHHHHHH
Confidence 4 368999999 998 699999999999999887653
No 74
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=99.21 E-value=1.5e-10 Score=114.95 Aligned_cols=149 Identities=17% Similarity=0.204 Sum_probs=100.8
Q ss_pred CCCCccccccChhhHHHHHHHHHHHHhCHHHHHHhCCCCCceeEEeCCCCCcHHHHHHHHHHHc------CCCeEEeccc
Q 035603 188 HPATFDTLAMASKKKEAIKKDLIKFTEGKEYYAKIGKAWKRGYLLFGPPGTGKSTMIAAMANCL------NYDVYDLELT 261 (431)
Q Consensus 188 ~p~~f~~l~g~~~~k~~i~~~l~~~~~~~~~~~~~g~~~~rg~LL~GPPGtGKTsla~aiA~~l------~~~i~~l~~~ 261 (431)
+...+++++|-++..+.|.+.+...+.. ..++.++|+||||||||++++++++.+ +..++.+++.
T Consensus 15 ~~~~p~~~~gr~~e~~~l~~~l~~~~~~---------~~~~~vli~G~~G~GKTtl~~~l~~~~~~~~~~~~~~~~i~~~ 85 (386)
T 2qby_A 15 PDYIPDELPHREDQIRKIASILAPLYRE---------EKPNNIFIYGLTGTGKTAVVKFVLSKLHKKFLGKFKHVYINTR 85 (386)
T ss_dssp SSCCCSCCTTCHHHHHHHHHSSGGGGGT---------CCCCCEEEEECTTSSHHHHHHHHHHHHHHHTCSSCEEEEEEHH
T ss_pred CccCCCCCCChHHHHHHHHHHHHHHHcC---------CCCCeEEEECCCCCCHHHHHHHHHHHHHHHhcCCceEEEEECC
Confidence 3345588999888888776655433221 335689999999999999999999988 8888888764
Q ss_pred CcCC----------------------hHHHH-HHHHHhhh---c-----cc-------chhhHHHHHHHHhcCcccCCCC
Q 035603 262 SVEN----------------------NNELR-SLLVDISS---K-----KK-------KSNVTLSGLLNCIGGLWSTCGG 303 (431)
Q Consensus 262 ~~~~----------------------~~~l~-~l~~~~~~---~-----~~-------~~~~~~s~lL~~ldg~~~~~~~ 303 (431)
...+ ...+. .++..... . ++ .....+..|+..++.. .+.
T Consensus 86 ~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlilDE~~~l~~~~~~~~l~~l~~~~~~~---~~~ 162 (386)
T 2qby_A 86 QIDTPYRVLADLLESLDVKVPFTGLSIAELYRRLVKAVRDYGSQVVIVLDEIDAFVKKYNDDILYKLSRINSEV---NKS 162 (386)
T ss_dssp HHCSHHHHHHHHTTTTSCCCCSSSCCHHHHHHHHHHHHHTCCSCEEEEEETHHHHHHSSCSTHHHHHHHHHHSC---CC-
T ss_pred CCCCHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHhccCCeEEEEEcChhhhhccCcCHHHHHHhhchhhc---CCC
Confidence 3211 12222 22211111 1 11 1144566777777654 234
Q ss_pred ceEEEEecCCC---CCCChhhhccCcee-EEEEcCCCCHHHHHHHHHHhhc
Q 035603 304 ERIIVFTTNHV---DKLDPALIRRGRMD-KHIEMPYCCFEAFKVLAKNYLE 350 (431)
Q Consensus 304 ~~ivI~TTN~~---~~Ld~AllRpGRfd-~~I~~~~p~~~~r~~i~~~~l~ 350 (431)
++.+|++||.+ +.+++++.+ ||. ..|++++++.++...++...+.
T Consensus 163 ~~~~I~~~~~~~~~~~~~~~~~~--r~~~~~i~l~~l~~~~~~~il~~~~~ 211 (386)
T 2qby_A 163 KISFIGITNDVKFVDLLDPRVKS--SLSEEEIIFPPYNAEELEDILTKRAQ 211 (386)
T ss_dssp -EEEEEEESCGGGGGGCTTHHHH--TTTTEEEEECCCCHHHHHHHHHHHHH
T ss_pred eEEEEEEECCCChHhhhCHHHhc--cCCCeeEEeCCCCHHHHHHHHHHHHH
Confidence 58889999877 578899988 664 5899999999999999988764
No 75
>2gno_A DNA polymerase III, gamma subunit-related protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: DNA; 2.00A {Thermotoga maritima} SCOP: a.80.1.1 c.37.1.20
Probab=99.17 E-value=1.6e-10 Score=113.20 Aligned_cols=114 Identities=13% Similarity=0.160 Sum_probs=88.3
Q ss_pred CceeEEeCCCCCcHHHHHHHHHHHc------CCCeEEecccC-cCChHHHHHHHHHhhhc--------------ccchhh
Q 035603 227 KRGYLLFGPPGTGKSTMIAAMANCL------NYDVYDLELTS-VENNNELRSLLVDISSK--------------KKKSNV 285 (431)
Q Consensus 227 ~rg~LL~GPPGtGKTsla~aiA~~l------~~~i~~l~~~~-~~~~~~l~~l~~~~~~~--------------~~~~~~ 285 (431)
...||||||||+|||++|+++|+.+ ..+++.++.++ -.+.+.+++++..+... +.-...
T Consensus 18 ~~~~Lf~Gp~G~GKtt~a~~la~~~~~~~~~~~d~~~l~~~~~~~~id~ir~li~~~~~~p~~~~~kvviIdead~lt~~ 97 (305)
T 2gno_A 18 GISILINGEDLSYPREVSLELPEYVEKFPPKASDVLEIDPEGENIGIDDIRTIKDFLNYSPELYTRKYVIVHDCERMTQQ 97 (305)
T ss_dssp SEEEEEECSSSSHHHHHHHHHHHHHHTSCCCTTTEEEECCSSSCBCHHHHHHHHHHHTSCCSSSSSEEEEETTGGGBCHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHhCchhhccCCCEEEEcCCcCCCCHHHHHHHHHHHhhccccCCceEEEeccHHHhCHH
Confidence 3489999999999999999999874 45788888764 33556788877665432 233445
Q ss_pred HHHHHHHHhcCcccCCCCceEEEEecCCCCCCChhhhccCceeEEEEcCCCCHHHHHHHHHHhh
Q 035603 286 TLSGLLNCIGGLWSTCGGERIIVFTTNHVDKLDPALIRRGRMDKHIEMPYCCFEAFKVLAKNYL 349 (431)
Q Consensus 286 ~~s~lL~~ldg~~~~~~~~~ivI~TTN~~~~Ld~AllRpGRfd~~I~~~~p~~~~r~~i~~~~l 349 (431)
..+.||..|+. +++..++|++||.+++|.|++++ | .++|++|+.++....++..+
T Consensus 98 a~naLLk~LEe----p~~~t~fIl~t~~~~kl~~tI~S--R---~~~f~~l~~~~i~~~L~~~~ 152 (305)
T 2gno_A 98 AANAFLKALEE----PPEYAVIVLNTRRWHYLLPTIKS--R---VFRVVVNVPKEFRDLVKEKI 152 (305)
T ss_dssp HHHHTHHHHHS----CCTTEEEEEEESCGGGSCHHHHT--T---SEEEECCCCHHHHHHHHHHH
T ss_pred HHHHHHHHHhC----CCCCeEEEEEECChHhChHHHHc--e---eEeCCCCCHHHHHHHHHHHh
Confidence 67889999884 34558888989999999999999 7 78999999888888777664
No 76
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=99.15 E-value=9.9e-11 Score=101.68 Aligned_cols=105 Identities=13% Similarity=0.101 Sum_probs=73.7
Q ss_pred ccccChhhHHHHHHHHHHHHhCHHHHHHhCCCCCceeEEeCCCCCcHHHHHHHHHHHc---CCCeEEecccCcCChHHHH
Q 035603 194 TLAMASKKKEAIKKDLIKFTEGKEYYAKIGKAWKRGYLLFGPPGTGKSTMIAAMANCL---NYDVYDLELTSVENNNELR 270 (431)
Q Consensus 194 ~l~g~~~~k~~i~~~l~~~~~~~~~~~~~g~~~~rg~LL~GPPGtGKTsla~aiA~~l---~~~i~~l~~~~~~~~~~l~ 270 (431)
+++|.+...+.+.+.+..... .+..+||+||||||||++|++|++.. +.+++ +++..+.....+.
T Consensus 2 ~iiG~s~~~~~~~~~~~~~a~-----------~~~~vll~G~~GtGKt~lA~~i~~~~~~~~~~~v-~~~~~~~~~~~~~ 69 (145)
T 3n70_A 2 ELIGRSEWINQYRRRLQQLSE-----------TDIAVWLYGAPGTGRMTGARYLHQFGRNAQGEFV-YRELTPDNAPQLN 69 (145)
T ss_dssp --CCSSHHHHHHHHHHHHHTT-----------CCSCEEEESSTTSSHHHHHHHHHHSSTTTTSCCE-EEECCTTTSSCHH
T ss_pred CceeCCHHHHHHHHHHHHHhC-----------CCCCEEEECCCCCCHHHHHHHHHHhCCccCCCEE-EECCCCCcchhhh
Confidence 467777887877776655432 34679999999999999999999987 77899 9998876555566
Q ss_pred HHHHHhhhc-------ccchhhHHHHHHHHhcCcccCCCCceEEEEecCCC
Q 035603 271 SLLVDISSK-------KKKSNVTLSGLLNCIGGLWSTCGGERIIVFTTNHV 314 (431)
Q Consensus 271 ~l~~~~~~~-------~~~~~~~~s~lL~~ldg~~~~~~~~~ivI~TTN~~ 314 (431)
.++..+... +.-.......|+..|... ...+.+|+|||.+
T Consensus 70 ~~~~~a~~g~l~ldei~~l~~~~q~~Ll~~l~~~----~~~~~~I~~t~~~ 116 (145)
T 3n70_A 70 DFIALAQGGTLVLSHPEHLTREQQYHLVQLQSQE----HRPFRLIGIGDTS 116 (145)
T ss_dssp HHHHHHTTSCEEEECGGGSCHHHHHHHHHHHHSS----SCSSCEEEEESSC
T ss_pred cHHHHcCCcEEEEcChHHCCHHHHHHHHHHHhhc----CCCEEEEEECCcC
Confidence 666655443 333445567788887433 2336688888864
No 77
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=99.13 E-value=2.2e-10 Score=127.04 Aligned_cols=148 Identities=16% Similarity=0.234 Sum_probs=105.0
Q ss_pred cccccChhhHHHHHHHHHHHHhCHHHHHHhCCC----CCceeEEeCCCCCcHHHHHHHHHHHc---CCCeEEecccCcCC
Q 035603 193 DTLAMASKKKEAIKKDLIKFTEGKEYYAKIGKA----WKRGYLLFGPPGTGKSTMIAAMANCL---NYDVYDLELTSVEN 265 (431)
Q Consensus 193 ~~l~g~~~~k~~i~~~l~~~~~~~~~~~~~g~~----~~rg~LL~GPPGtGKTsla~aiA~~l---~~~i~~l~~~~~~~ 265 (431)
+.|+|.++.++.|...+..... |.. +...+||+||||||||++|++||+.+ +.+++.++++.+..
T Consensus 558 ~~viG~~~a~~~l~~~i~~~~~--------g~~~~~~p~~~vLl~Gp~GtGKT~lA~~la~~~~~~~~~~i~i~~~~~~~ 629 (854)
T 1qvr_A 558 KRVVGQDEAIRAVADAIRRARA--------GLKDPNRPIGSFLFLGPTGVGKTELAKTLAATLFDTEEAMIRIDMTEYME 629 (854)
T ss_dssp HHSCSCHHHHHHHHHHHHHHGG--------GCSCSSSCSEEEEEBSCSSSSHHHHHHHHHHHHHSSGGGEEEECTTTCCS
T ss_pred cccCCcHHHHHHHHHHHHHHhc--------ccCCCCCCceEEEEECCCCCCHHHHHHHHHHHhcCCCCcEEEEechhccc
Confidence 5678888888888776654432 211 12479999999999999999999998 78899999887643
Q ss_pred hHHHH-------------------HHHHHhhhc-------ccchhhHHHHHHHHhcCcccCC-------CCceEEEEecC
Q 035603 266 NNELR-------------------SLLVDISSK-------KKKSNVTLSGLLNCIGGLWSTC-------GGERIIVFTTN 312 (431)
Q Consensus 266 ~~~l~-------------------~l~~~~~~~-------~~~~~~~~s~lL~~ldg~~~~~-------~~~~ivI~TTN 312 (431)
...+. ..+...... +......++.||..||.-.-.. -.+++||+|||
T Consensus 630 ~~~~s~l~g~~~~~~G~~~~g~l~~~~~~~~~~vl~lDEi~~l~~~~~~~Ll~~l~~~~~~~~~g~~vd~~~~iiI~tsn 709 (854)
T 1qvr_A 630 KHAVSRLIGAPPGYVGYEEGGQLTEAVRRRPYSVILFDEIEKAHPDVFNILLQILDDGRLTDSHGRTVDFRNTVIILTSN 709 (854)
T ss_dssp SGGGGGC--------------CHHHHHHHCSSEEEEESSGGGSCHHHHHHHHHHHTTTEECCSSSCCEECTTEEEEEECC
T ss_pred hhHHHHHcCCCCCCcCccccchHHHHHHhCCCeEEEEecccccCHHHHHHHHHHhccCceECCCCCEeccCCeEEEEecC
Confidence 21111 111111111 3345677888999998432111 12578999999
Q ss_pred C--------------------------CCCCChhhhccCceeEEEEcCCCCHHHHHHHHHHhhc
Q 035603 313 H--------------------------VDKLDPALIRRGRMDKHIEMPYCCFEAFKVLAKNYLE 350 (431)
Q Consensus 313 ~--------------------------~~~Ld~AllRpGRfd~~I~~~~p~~~~r~~i~~~~l~ 350 (431)
. ...+.|+|+. |+|..+.+++|+.++...|+..++.
T Consensus 710 ~~~~~~~~~~~~~~~~~~l~~~v~~~~~~~f~~~l~~--Rl~~~i~~~pl~~edi~~i~~~~l~ 771 (854)
T 1qvr_A 710 LGSPLILEGLQKGWPYERIRDEVFKVLQQHFRPEFLN--RLDEIVVFRPLTKEQIRQIVEIQLS 771 (854)
T ss_dssp TTHHHHHHHHHTTCCHHHHHHHHHHHHHTTSCHHHHH--TCSBCCBCCCCCHHHHHHHHHHHHH
T ss_pred cChHHHhhhcccccchHHHHHHHHHHHHhhCCHHHHH--hcCeEEeCCCCCHHHHHHHHHHHHH
Confidence 7 2357888888 9999999999999999999998875
No 78
>3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold, hydro; HET: ADP; 2.91A {Escherichia coli}
Probab=99.04 E-value=1.2e-09 Score=113.71 Aligned_cols=137 Identities=18% Similarity=0.132 Sum_probs=85.4
Q ss_pred ccccChhhHHHHHHHHHHHHhCHHHHHHhCCCCCceeEEeCCCCCcHHHHHHHHHHHcCC--CeEEecccCcCChHHHH-
Q 035603 194 TLAMASKKKEAIKKDLIKFTEGKEYYAKIGKAWKRGYLLFGPPGTGKSTMIAAMANCLNY--DVYDLELTSVENNNELR- 270 (431)
Q Consensus 194 ~l~g~~~~k~~i~~~l~~~~~~~~~~~~~g~~~~rg~LL~GPPGtGKTsla~aiA~~l~~--~i~~l~~~~~~~~~~l~- 270 (431)
.|+|.+++++.+...+. .+.++||+||||||||++|++||+.++. ++..+++.. .+.+++-
T Consensus 23 ~ivGq~~~i~~l~~al~---------------~~~~VLL~GpPGtGKT~LAraLa~~l~~~~~f~~~~~~~-~t~~dL~G 86 (500)
T 3nbx_X 23 GLYERSHAIRLCLLAAL---------------SGESVFLLGPPGIAKSLIARRLKFAFQNARAFEYLMTRF-STPEEVFG 86 (500)
T ss_dssp TCSSCHHHHHHHHHHHH---------------HTCEEEEECCSSSSHHHHHHHGGGGBSSCCEEEEECCTT-CCHHHHHC
T ss_pred hhHHHHHHHHHHHHHHh---------------cCCeeEeecCchHHHHHHHHHHHHHHhhhhHHHHHHHhc-CCHHHhcC
Confidence 35777777766543321 1358999999999999999999999854 333333321 1111111
Q ss_pred ----------HHHHHhhhc-------------ccchhhHHHHHHHHhcC-------cccCCCCceEEEEecCCCC---CC
Q 035603 271 ----------SLLVDISSK-------------KKKSNVTLSGLLNCIGG-------LWSTCGGERIIVFTTNHVD---KL 317 (431)
Q Consensus 271 ----------~l~~~~~~~-------------~~~~~~~~s~lL~~ldg-------~~~~~~~~~ivI~TTN~~~---~L 317 (431)
..+...... +.....+.+.|+..|+. ..... ...++|+|||.+. .+
T Consensus 87 ~~~~~~~~~~g~~~~~~~g~l~~~~IL~IDEI~r~~~~~q~~LL~~lee~~v~i~G~~~~~-~~~~iI~ATN~lpe~~~~ 165 (500)
T 3nbx_X 87 PLSIQALKDEGRYERLTSGYLPEAEIVFLDEIWKAGPAILNTLLTAINERQFRNGAHVEKI-PMRLLVAASNELPEADSS 165 (500)
T ss_dssp CBC----------CBCCTTSGGGCSEEEEESGGGCCHHHHHHHHHHHHSSEEECSSSEEEC-CCCEEEEEESSCCCTTCT
T ss_pred cccHHHHhhchhHHhhhccCCCcceeeeHHhHhhhcHHHHHHHHHHHHHHhccCCCCcCCc-chhhhhhccccCCCcccc
Confidence 111100000 23446678888888853 21111 2246788888532 24
Q ss_pred ChhhhccCceeEEEEcCCCCH-HHHHHHHHHhh
Q 035603 318 DPALIRRGRMDKHIEMPYCCF-EAFKVLAKNYL 349 (431)
Q Consensus 318 d~AllRpGRfd~~I~~~~p~~-~~r~~i~~~~l 349 (431)
.+|+++ ||..+|.+|+|+. +++..|++...
T Consensus 166 ~~aLld--RF~~~i~v~~p~~~ee~~~IL~~~~ 196 (500)
T 3nbx_X 166 LEALYD--RMLIRLWLDKVQDKANFRSMLTSQQ 196 (500)
T ss_dssp THHHHT--TCCEEEECCSCCCHHHHHHHHTCCC
T ss_pred HHHHHH--HHHHHHHHHHhhhhhhHHHHHhccc
Confidence 569999 9999999999986 77888887654
No 79
>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}
Probab=99.02 E-value=1.1e-09 Score=107.07 Aligned_cols=144 Identities=19% Similarity=0.219 Sum_probs=92.6
Q ss_pred ccccChhhHHHHHHHHHHHHhCHHHHHHhCCCCCceeEEeCCCCCcHHHHHHHHHHHc---CCCeEEecccCcCChHHHH
Q 035603 194 TLAMASKKKEAIKKDLIKFTEGKEYYAKIGKAWKRGYLLFGPPGTGKSTMIAAMANCL---NYDVYDLELTSVENNNELR 270 (431)
Q Consensus 194 ~l~g~~~~k~~i~~~l~~~~~~~~~~~~~g~~~~rg~LL~GPPGtGKTsla~aiA~~l---~~~i~~l~~~~~~~~~~l~ 270 (431)
+++|.+...+.+.+.+.... +.+.++||+||||||||++|++|++.. +.+++.++++.+...---.
T Consensus 3 ~iig~s~~~~~~~~~~~~~a-----------~~~~~vLi~Ge~GtGKt~lAr~i~~~~~~~~~~~v~v~~~~~~~~l~~~ 71 (304)
T 1ojl_A 3 HMIGSSPAMQHLLNEIAMVA-----------PSDATVLIHGDSGTGKELVARALHACSARSDRPLVTLNCAALNESLLES 71 (304)
T ss_dssp CCCCCSHHHHHHHHHHHHHC-----------STTSCEEEESCTTSCHHHHHHHHHHHSSCSSSCCCEEECSSCCHHHHHH
T ss_pred CcEECCHHHHHHHHHHHHHh-----------CCCCcEEEECCCCchHHHHHHHHHHhCcccCCCeEEEeCCCCChHHHHH
Confidence 57788888888777665543 235689999999999999999999975 5789999988763221112
Q ss_pred HHHH------------------Hhhhc-------ccchhhHHHHHHHHhcCccc-------CCCCceEEEEecCCC----
Q 035603 271 SLLV------------------DISSK-------KKKSNVTLSGLLNCIGGLWS-------TCGGERIIVFTTNHV---- 314 (431)
Q Consensus 271 ~l~~------------------~~~~~-------~~~~~~~~s~lL~~ldg~~~-------~~~~~~ivI~TTN~~---- 314 (431)
.+|. .+... +.-.......|+..++...- .....+.||+|||..
T Consensus 72 ~lfg~~~g~~tg~~~~~~g~~~~a~~g~L~LDEi~~l~~~~q~~Ll~~l~~~~~~~~g~~~~~~~~~riI~atn~~l~~~ 151 (304)
T 1ojl_A 72 ELFGHEKGAFTGADKRREGRFVEADGGTLFLDEIGDISPLMQVRLLRAIQEREVQRVGSNQTISVDVRLIAATHRDLAEE 151 (304)
T ss_dssp HHTCCCSSCCC---CCCCCHHHHHTTSEEEEESCTTCCHHHHHHHHHHHHSSBCCBTTBCCCCBCCCEEEEEESSCHHHH
T ss_pred HhcCccccccCchhhhhcCHHHhcCCCEEEEeccccCCHHHHHHHHHHHhcCEeeecCCcccccCCeEEEEecCccHHHH
Confidence 2221 11111 22234456677887764320 011247889999975
Q ss_pred ---CCCChhhhccCce-eEEEEcCCCC--HHHHHHHHHHhhc
Q 035603 315 ---DKLDPALIRRGRM-DKHIEMPYCC--FEAFKVLAKNYLE 350 (431)
Q Consensus 315 ---~~Ld~AllRpGRf-d~~I~~~~p~--~~~r~~i~~~~l~ 350 (431)
..++++|.. || ...|.+|+.. .+....++.+++.
T Consensus 152 v~~g~fr~~L~~--Rl~~~~i~lPpL~eR~edi~~l~~~~l~ 191 (304)
T 1ojl_A 152 VSAGRFRQDLYY--RLNVVAIEMPSLRQRREDIPLLADHFLR 191 (304)
T ss_dssp HHHTSSCHHHHH--HHSSEEEECCCSGGGGGGHHHHHHHHHH
T ss_pred HHhCCcHHHHHh--hcCeeEEeccCHHHhHhhHHHHHHHHHH
Confidence 346677777 77 4557777765 4556667776664
No 80
>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A
Probab=98.98 E-value=1.6e-09 Score=130.87 Aligned_cols=121 Identities=24% Similarity=0.381 Sum_probs=86.8
Q ss_pred CceeEEeCCCCCcHHHHH-HHHHHHcCCCeEEecccCcCChHHHHHHHHHhhh----------------c------c---
Q 035603 227 KRGYLLFGPPGTGKSTMI-AAMANCLNYDVYDLELTSVENNNELRSLLVDISS----------------K------K--- 280 (431)
Q Consensus 227 ~rg~LL~GPPGtGKTsla-~aiA~~l~~~i~~l~~~~~~~~~~l~~l~~~~~~----------------~------~--- 280 (431)
++++||+||||||||++| +++++..++.++.++++...+...+.+.+..... + +
T Consensus 1267 ~~~vLL~GPpGtGKT~la~~~l~~~~~~~~~~infsa~ts~~~~~~~i~~~~~~~~~~~g~~~~P~~~gk~~VlFiDEin 1346 (2695)
T 4akg_A 1267 KRGIILCGPPGSGKTMIMNNALRNSSLYDVVGINFSKDTTTEHILSALHRHTNYVTTSKGLTLLPKSDIKNLVLFCDEIN 1346 (2695)
T ss_dssp TCEEEEECSTTSSHHHHHHHHHHSCSSCEEEEEECCTTCCHHHHHHHHHHHBCCEEETTTEEEEEBSSSSCEEEEEETTT
T ss_pred CCeEEEECCCCCCHHHHHHHHHhcCCCCceEEEEeecCCCHHHHHHHHHHHhhhccccCCccccCCCCCceEEEEecccc
Confidence 579999999999999999 5666666888899999888777777777654311 0 0
Q ss_pred -----cchhhHHHHHHH-Hh--cCcccCCC------CceEEEEecCCCC-----CCChhhhccCceeEEEEcCCCCHHHH
Q 035603 281 -----KKSNVTLSGLLN-CI--GGLWSTCG------GERIIVFTTNHVD-----KLDPALIRRGRMDKHIEMPYCCFEAF 341 (431)
Q Consensus 281 -----~~~~~~~s~lL~-~l--dg~~~~~~------~~~ivI~TTN~~~-----~Ld~AllRpGRfd~~I~~~~p~~~~r 341 (431)
.........+|+ .+ +|++.... .++.+|+|||++. .|||+|+| || ..|.++.|+.+++
T Consensus 1347 mp~~d~yg~q~~lelLRq~le~gg~yd~~~~~~~~~~~i~lIaA~Npp~~gGR~~l~~rllR--rf-~vi~i~~P~~~~l 1423 (2695)
T 4akg_A 1347 LPKLDKYGSQNVVLFLRQLMEKQGFWKTPENKWVTIERIHIVGACNPPTDPGRIPMSERFTR--HA-AILYLGYPSGKSL 1423 (2695)
T ss_dssp CSCCCSSSCCHHHHHHHHHHHTSSEECTTTCCEEEEESEEEEEEECCTTSTTCCCCCHHHHT--TE-EEEECCCCTTTHH
T ss_pred cccccccCchhHHHHHHHHHhcCCEEEcCCCcEEEecCEEEEEecCCCccCCCccCChhhhh--ee-eEEEeCCCCHHHH
Confidence 001112223333 22 34433211 2478999999995 89999999 88 7899999999999
Q ss_pred HHHHHHhhc
Q 035603 342 KVLAKNYLE 350 (431)
Q Consensus 342 ~~i~~~~l~ 350 (431)
..|+..++.
T Consensus 1424 ~~I~~~il~ 1432 (2695)
T 4akg_A 1424 SQIYEIYYK 1432 (2695)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 999988764
No 81
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=98.97 E-value=4.5e-10 Score=97.31 Aligned_cols=124 Identities=10% Similarity=0.030 Sum_probs=80.1
Q ss_pred ccccChhhHHHHHHHHHHHHhCHHHHHHhCCCCCceeEEeCCCCCcHHHHHHHHHHHcCCCeEEecccCcCChHHHHHHH
Q 035603 194 TLAMASKKKEAIKKDLIKFTEGKEYYAKIGKAWKRGYLLFGPPGTGKSTMIAAMANCLNYDVYDLELTSVENNNELRSLL 273 (431)
Q Consensus 194 ~l~g~~~~k~~i~~~l~~~~~~~~~~~~~g~~~~rg~LL~GPPGtGKTsla~aiA~~l~~~i~~l~~~~~~~~~~l~~l~ 273 (431)
+++|.++..+.+.+.+..+.. .+..+||+||||||||++|+++++..+ +++.++++.+... ....++
T Consensus 5 ~~iG~s~~~~~l~~~~~~~~~-----------~~~~vll~G~~GtGKt~lA~~i~~~~~-~~~~~~~~~~~~~-~~~~~~ 71 (143)
T 3co5_A 5 DKLGNSAAIQEMNREVEAAAK-----------RTSPVFLTGEAGSPFETVARYFHKNGT-PWVSPARVEYLID-MPMELL 71 (143)
T ss_dssp ---CCCHHHHHHHHHHHHHHT-----------CSSCEEEEEETTCCHHHHHGGGCCTTS-CEECCSSTTHHHH-CHHHHH
T ss_pred CceeCCHHHHHHHHHHHHHhC-----------CCCcEEEECCCCccHHHHHHHHHHhCC-CeEEechhhCChH-hhhhHH
Confidence 467778888888887765543 246799999999999999999999988 8999988875321 144555
Q ss_pred HHhhhc-------ccchhhHHHHHHHHhcCcccCCCCceEEEEecCCC-CC----CChhhhccCce-eEEEEcCC
Q 035603 274 VDISSK-------KKKSNVTLSGLLNCIGGLWSTCGGERIIVFTTNHV-DK----LDPALIRRGRM-DKHIEMPY 335 (431)
Q Consensus 274 ~~~~~~-------~~~~~~~~s~lL~~ldg~~~~~~~~~ivI~TTN~~-~~----Ld~AllRpGRf-d~~I~~~~ 335 (431)
..+... +.........|+..++... ..++.+|+|||.+ +. +++.|.. |+ ...|++|+
T Consensus 72 ~~a~~~~l~lDei~~l~~~~q~~Ll~~l~~~~---~~~~~iI~~tn~~~~~~~~~~~~~L~~--rl~~~~i~lPp 141 (143)
T 3co5_A 72 QKAEGGVLYVGDIAQYSRNIQTGITFIIGKAE---RCRVRVIASCSYAAGSDGISCEEKLAG--LFSESVVRIPP 141 (143)
T ss_dssp HHTTTSEEEEEECTTCCHHHHHHHHHHHHHHT---TTTCEEEEEEEECTTTC--CHHHHHHH--HSSSEEEEECC
T ss_pred HhCCCCeEEEeChHHCCHHHHHHHHHHHHhCC---CCCEEEEEecCCCHHHHHhCccHHHHH--HhcCcEEeCCC
Confidence 544433 2333445556777766432 2346788888854 33 3445554 43 44677765
No 82
>3f9v_A Minichromosome maintenance protein MCM; replicative helicase, DNA replication, MCM complex, AAA+ Pro ATP-binding, DNA-binding, helicase; 4.35A {Sulfolobus solfataricus}
Probab=98.95 E-value=1.9e-10 Score=122.54 Aligned_cols=120 Identities=18% Similarity=0.204 Sum_probs=79.4
Q ss_pred eeEEeCCCCCcHHHHHHHHHHHcCCCeEEecc----cCcCC---hHHH-------HHHHHHhhhc-------ccchhhHH
Q 035603 229 GYLLFGPPGTGKSTMIAAMANCLNYDVYDLEL----TSVEN---NNEL-------RSLLVDISSK-------KKKSNVTL 287 (431)
Q Consensus 229 g~LL~GPPGtGKTsla~aiA~~l~~~i~~l~~----~~~~~---~~~l-------~~l~~~~~~~-------~~~~~~~~ 287 (431)
++||+||||||||++|+++|+.++..++.... .++.. .+.. ...+..+... +.......
T Consensus 329 ~vLL~GppGtGKT~LAr~la~~~~r~~~~~~~~~~~~~l~~~~~~~~~~g~~~~~~G~l~~A~~gil~IDEid~l~~~~q 408 (595)
T 3f9v_A 329 HILIIGDPGTAKSQMLQFISRVAPRAVYTTGKGSTAAGLTAAVVREKGTGEYYLEAGALVLADGGIAVIDEIDKMRDEDR 408 (595)
T ss_dssp CEEEEESSCCTHHHHHHSSSTTCSCEECCCTTCSTTTTSEEECSSGGGTSSCSEEECHHHHHSSSEECCTTTTCCCSHHH
T ss_pred ceEEECCCchHHHHHHHHHHHhCCCceecCCCccccccccceeeeccccccccccCCeeEecCCCcEEeehhhhCCHhHh
Confidence 79999999999999999999999876655321 22100 0000 0011111111 33345567
Q ss_pred HHHHHHhcCc---------ccCCCCceEEEEecCCCC-------------CCChhhhccCcee-EEEEcCCCCHHHHHHH
Q 035603 288 SGLLNCIGGL---------WSTCGGERIIVFTTNHVD-------------KLDPALIRRGRMD-KHIEMPYCCFEAFKVL 344 (431)
Q Consensus 288 s~lL~~ldg~---------~~~~~~~~ivI~TTN~~~-------------~Ld~AllRpGRfd-~~I~~~~p~~~~r~~i 344 (431)
+.|+..|+.- .......+.||+|||.++ .|++||++ ||| ..+..++|+.+ ...|
T Consensus 409 ~~Ll~~le~~~i~i~~~g~~~~~~~~~~vIaatNp~~G~~~~~~~~~~ni~l~~aLl~--RFDl~~~~~~~~~~e-~~~i 485 (595)
T 3f9v_A 409 VAIHEAMEQQTVSIAKAGIVAKLNARAAVIAAGNPKFGRYISERPVSDNINLPPTILS--RFDLIFILKDQPGEQ-DREL 485 (595)
T ss_dssp HHHHHHHHSSSEEEESSSSEEEECCCCEEEEEECCTTCCSCTTSCSCTTTCSCSSSGG--GCSCCEEECCTTHHH-HHHH
T ss_pred hhhHHHHhCCEEEEecCCcEEEecCceEEEEEcCCcCCccCcccCchhccCCCHHHHh--hCeEEEEeCCCCCHH-HHHH
Confidence 7788888632 112223578999999987 89999999 998 46667888888 8888
Q ss_pred HHHhhch
Q 035603 345 AKNYLEI 351 (431)
Q Consensus 345 ~~~~l~~ 351 (431)
+++.+..
T Consensus 486 ~~~il~~ 492 (595)
T 3f9v_A 486 ANYILDV 492 (595)
T ss_dssp HHHHHTT
T ss_pred HHHHHHH
Confidence 8877653
No 83
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=98.87 E-value=6.4e-10 Score=111.83 Aligned_cols=106 Identities=19% Similarity=0.184 Sum_probs=72.2
Q ss_pred hCCCCCceeEEeCCCCCcHHHHHHHHHHHcCCCeEEecccCcCChHHHHHHHHHhh----hc---cc--------chhhH
Q 035603 222 IGKAWKRGYLLFGPPGTGKSTMIAAMANCLNYDVYDLELTSVENNNELRSLLVDIS----SK---KK--------KSNVT 286 (431)
Q Consensus 222 ~g~~~~rg~LL~GPPGtGKTsla~aiA~~l~~~i~~l~~~~~~~~~~l~~l~~~~~----~~---~~--------~~~~~ 286 (431)
.+++.++.++|+||||+||||++++||+.++..++.++...-.....+..++.... .- .. ....+
T Consensus 164 ~~i~~~~~i~l~G~~GsGKSTl~~~l~~~~~g~~~~~~~~~~~~~~~lg~~~q~~~~l~dd~~~~~~~~r~l~~~~~~~~ 243 (377)
T 1svm_A 164 YNIPKKRYWLFKGPIDSGKTTLAAALLELCGGKALNVNLPLDRLNFELGVAIDQFLVVFEDVKGTGGESRDLPSGQGINN 243 (377)
T ss_dssp HCCTTCCEEEEECSTTSSHHHHHHHHHHHHCCEEECCSSCTTTHHHHHGGGTTCSCEEETTCCCSTTTTTTCCCCSHHHH
T ss_pred cccCCCCEEEEECCCCCCHHHHHHHHHhhcCCcEEEEeccchhHHHHHHHhcchhHHHHHHHHHHHHHHhhccccCcchH
Confidence 47888899999999999999999999999887766544332110011111111100 00 00 11113
Q ss_pred HHHHHHHhcCcccCCCCceEEEEecCCCCCCChhhhccCceeEEEEcCC
Q 035603 287 LSGLLNCIGGLWSTCGGERIIVFTTNHVDKLDPALIRRGRMDKHIEMPY 335 (431)
Q Consensus 287 ~s~lL~~ldg~~~~~~~~~ivI~TTN~~~~Ld~AllRpGRfd~~I~~~~ 335 (431)
.+.+.+.+||. +.|+++|||++.+ ++++||||++..++..+
T Consensus 244 ~~~l~~~ldG~-------v~v~~~tn~~~~l-~alf~pg~ld~~~~~l~ 284 (377)
T 1svm_A 244 LDNLRDYLDGS-------VKVNLEKKHLNKR-TQIFPPGIVTMNEYSVP 284 (377)
T ss_dssp HHTTHHHHHCS-------SCEEECCSSSCCE-EECCCCEEEEECSCCCC
T ss_pred HHHHHHHhcCC-------CeEeeccCchhhH-HHhhcCcccChhHHhhc
Confidence 46778888874 5678899999999 79999999999988876
No 84
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=98.83 E-value=1.1e-08 Score=91.52 Aligned_cols=69 Identities=17% Similarity=0.278 Sum_probs=49.8
Q ss_pred CCCCccccccChhhHHHHHHHHHHHHhCHHHHHHhCCCCCceeEEeCCCCCcHHHHHHHHHHHc----CCCeEEecccC
Q 035603 188 HPATFDTLAMASKKKEAIKKDLIKFTEGKEYYAKIGKAWKRGYLLFGPPGTGKSTMIAAMANCL----NYDVYDLELTS 262 (431)
Q Consensus 188 ~p~~f~~l~g~~~~k~~i~~~l~~~~~~~~~~~~~g~~~~rg~LL~GPPGtGKTsla~aiA~~l----~~~i~~l~~~~ 262 (431)
.+.+|++++...+..+.+.+.+..+..+ +.++.+++++|+||||||||+|++++|+.+ |..++.++..+
T Consensus 5 ~~~~f~~~~~~~~~~~~~~~~~~~~~~~------~~~~~g~~~~l~G~~G~GKTtL~~~i~~~~~~~~g~~~~~~~~~~ 77 (180)
T 3ec2_A 5 WNANLDTYHPKNVSQNRALLTIRVFVHN------FNPEEGKGLTFVGSPGVGKTHLAVATLKAIYEKKGIRGYFFDTKD 77 (180)
T ss_dssp TTCCSSSCCCCSHHHHHHHHHHHHHHHS------CCGGGCCEEEECCSSSSSHHHHHHHHHHHHHHHSCCCCCEEEHHH
T ss_pred hhCccccccCCCHHHHHHHHHHHHHHHh------ccccCCCEEEEECCCCCCHHHHHHHHHHHHHHHcCCeEEEEEHHH
Confidence 4578999887555555555666655543 334456899999999999999999999987 55666555443
No 85
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*
Probab=98.73 E-value=9.1e-08 Score=96.01 Aligned_cols=150 Identities=13% Similarity=0.101 Sum_probs=91.5
Q ss_pred CccccccChhhHHHHHHHH-HHHHhCHHHHHHhCCCCCceeEE--eCCCCCcHHHHHHHHHHHc---------CCCeEEe
Q 035603 191 TFDTLAMASKKKEAIKKDL-IKFTEGKEYYAKIGKAWKRGYLL--FGPPGTGKSTMIAAMANCL---------NYDVYDL 258 (431)
Q Consensus 191 ~f~~l~g~~~~k~~i~~~l-~~~~~~~~~~~~~g~~~~rg~LL--~GPPGtGKTsla~aiA~~l---------~~~i~~l 258 (431)
..+.++|-++..+.|.+.+ ....... ...++.++| +||||+|||++++++++.+ +..++.+
T Consensus 20 ~p~~l~gR~~el~~l~~~l~~~~~~~~-------~~~~~~~li~i~G~~G~GKT~L~~~~~~~~~~~~~~~~~~~~~~~~ 92 (412)
T 1w5s_A 20 IPPELRVRRGEAEALARIYLNRLLSGA-------GLSDVNMIYGSIGRVGIGKTTLAKFTVKRVSEAAAKEGLTVKQAYV 92 (412)
T ss_dssp CCSSCSSSCHHHHHHHHHHHHHHHTSS-------CBCCEEEEEECTTCCSSSHHHHHHHHHHHHHHHHHHTTCCEEEEEE
T ss_pred CCCCCCChHHHHHHHHHHHhHHHhcCC-------CCCCCEEEEeCcCcCCCCHHHHHHHHHHHHHHHHhccCCceeEEEE
Confidence 3477888888888877766 4433220 013467899 9999999999999999876 4566777
Q ss_pred cccCcCChH----------------------HH----HHHHHHhhhc-----ccc---------hhhHHHHHHHHhcCcc
Q 035603 259 ELTSVENNN----------------------EL----RSLLVDISSK-----KKK---------SNVTLSGLLNCIGGLW 298 (431)
Q Consensus 259 ~~~~~~~~~----------------------~l----~~l~~~~~~~-----~~~---------~~~~~s~lL~~ldg~~ 298 (431)
++....+.. .+ ...+...... ++. ....+..++..++...
T Consensus 93 ~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~llvlDe~~~l~~~~~~~~~~l~~l~~~~~~~~ 172 (412)
T 1w5s_A 93 NAFNAPNLYTILSLIVRQTGYPIQVRGAPALDILKALVDNLYVENHYLLVILDEFQSMLSSPRIAAEDLYTLLRVHEEIP 172 (412)
T ss_dssp EGGGCCSHHHHHHHHHHHHTCCCCCTTCCHHHHHHHHHHHHHHHTCEEEEEEESTHHHHSCTTSCHHHHHHHHTHHHHSC
T ss_pred ECCCCCCHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHHhcCCeEEEEEeCHHHHhhccCcchHHHHHHHHHHHhcc
Confidence 754322211 11 1111111111 111 1244444555554331
Q ss_pred cCCC--CceEEEEecCCCC---CCC---hhhhccCceeEEEEcCCCCHHHHHHHHHHhhc
Q 035603 299 STCG--GERIIVFTTNHVD---KLD---PALIRRGRMDKHIEMPYCCFEAFKVLAKNYLE 350 (431)
Q Consensus 299 ~~~~--~~~ivI~TTN~~~---~Ld---~AllRpGRfd~~I~~~~p~~~~r~~i~~~~l~ 350 (431)
. .+ ..+.+|+|||.++ .++ +.+.+ |+...|.+++++.++..+++...+.
T Consensus 173 ~-~~~~~~v~lI~~~~~~~~~~~l~~~~~~~~~--~~~~~i~l~~l~~~e~~~ll~~~~~ 229 (412)
T 1w5s_A 173 S-RDGVNRIGFLLVASDVRALSYMREKIPQVES--QIGFKLHLPAYKSRELYTILEQRAE 229 (412)
T ss_dssp C-TTSCCBEEEEEEEEETHHHHHHHHHCHHHHT--TCSEEEECCCCCHHHHHHHHHHHHH
T ss_pred c-CCCCceEEEEEEeccccHHHHHhhhcchhhh--hcCCeeeeCCCCHHHHHHHHHHHHH
Confidence 0 12 4588888888665 344 66767 5555699999999999999877654
No 86
>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A
Probab=98.63 E-value=8.1e-07 Score=107.58 Aligned_cols=117 Identities=21% Similarity=0.221 Sum_probs=86.6
Q ss_pred CceeEEeCCCCCcHHHHHHHHHHHcCCCeEEecccCcCChHHHHHHHHHhhhc---------ccchhhHHHHH-------
Q 035603 227 KRGYLLFGPPGTGKSTMIAAMANCLNYDVYDLELTSVENNNELRSLLVDISSK---------KKKSNVTLSGL------- 290 (431)
Q Consensus 227 ~rg~LL~GPPGtGKTsla~aiA~~l~~~i~~l~~~~~~~~~~l~~l~~~~~~~---------~~~~~~~~s~l------- 290 (431)
..|.+++||||||||++++++|+.+|.+++.+++++-.+...+..+|..+... +.....+++.+
T Consensus 645 ~~~~~l~GpaGtGKTe~vk~LA~~lg~~~v~~nc~e~ld~~~lg~~~~g~~~~Gaw~~~DE~nr~~~evLs~l~~~l~~i 724 (2695)
T 4akg_A 645 KYGGCFFGPAGTGKTETVKAFGQNLGRVVVVFNCDDSFDYQVLSRLLVGITQIGAWGCFDEFNRLDEKVLSAVSANIQQI 724 (2695)
T ss_dssp TCEEEEECCTTSCHHHHHHHHHHTTTCCCEEEETTSSCCHHHHHHHHHHHHHHTCEEEEETTTSSCHHHHHHHHHHHHHH
T ss_pred CCCCcccCCCCCCcHHHHHHHHHHhCCcEEEEECCCCCChhHhhHHHHHHHhcCCEeeehhhhhcChHHHHHHHHHHHHH
Confidence 46899999999999999999999999999999999988888888888776654 22333344443
Q ss_pred HHHh---------cCcccCCCCceEEEEecC----CCCCCChhhhccCceeEEEEcCCCCHHHHHHHHH
Q 035603 291 LNCI---------GGLWSTCGGERIIVFTTN----HVDKLDPALIRRGRMDKHIEMPYCCFEAFKVLAK 346 (431)
Q Consensus 291 L~~l---------dg~~~~~~~~~ivI~TTN----~~~~Ld~AllRpGRfd~~I~~~~p~~~~r~~i~~ 346 (431)
++.+ +|-.-.......|++|.| ....||++|.+ || +.|.|.+|+.+...++.-
T Consensus 725 ~~al~~~~~~i~~~g~~i~l~~~~~vfiT~NPgy~g~~eLP~~Lk~--~F-r~v~m~~Pd~~~i~ei~l 790 (2695)
T 4akg_A 725 QNGLQVGKSHITLLEEETPLSPHTAVFITLNPGYNGRSELPENLKK--SF-REFSMKSPQSGTIAEMIL 790 (2695)
T ss_dssp HHHHHHTCSEEECSSSEEECCTTCEEEEEECCCSSSSCCCCHHHHT--TE-EEEECCCCCHHHHHHHHH
T ss_pred HHHHHcCCcEEeeCCcEEecCCCceEEEEeCCCccCcccccHHHHh--he-EEEEeeCCCHHHHHHHHH
Confidence 2222 111111122356888998 45679999999 88 789999999988777653
No 87
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=98.55 E-value=1.2e-07 Score=86.89 Aligned_cols=35 Identities=26% Similarity=0.350 Sum_probs=30.4
Q ss_pred CCCCCceeEEeCCCCCcHHHHHHHHHHHcCCCeEE
Q 035603 223 GKAWKRGYLLFGPPGTGKSTMIAAMANCLNYDVYD 257 (431)
Q Consensus 223 g~~~~rg~LL~GPPGtGKTsla~aiA~~l~~~i~~ 257 (431)
|+|.++++|||||||||||++|.+||+.++-.++.
T Consensus 54 ~iPkkn~ili~GPPGtGKTt~a~ala~~l~g~i~~ 88 (212)
T 1tue_A 54 GTPKKNCLVFCGPANTGKSYFGMSFIHFIQGAVIS 88 (212)
T ss_dssp TCTTCSEEEEESCGGGCHHHHHHHHHHHHTCEECC
T ss_pred cCCcccEEEEECCCCCCHHHHHHHHHHHhCCCeee
Confidence 57778899999999999999999999998765543
No 88
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=98.51 E-value=9.1e-08 Score=111.34 Aligned_cols=65 Identities=15% Similarity=0.223 Sum_probs=45.4
Q ss_pred CCccccccChhhHHHHHHHHHHHHhC----------HHHHHH------hC------------CCCCceeEEeCCCCCcHH
Q 035603 190 ATFDTLAMASKKKEAIKKDLIKFTEG----------KEYYAK------IG------------KAWKRGYLLFGPPGTGKS 241 (431)
Q Consensus 190 ~~f~~l~g~~~~k~~i~~~l~~~~~~----------~~~~~~------~g------------~~~~rg~LL~GPPGtGKT 241 (431)
.+|+++.+.++.|+.+++.+.+++.. ++.|+. .| .|..|.+|||||||||||
T Consensus 1017 ~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tG~~glD~~lg~GG~p~g~~~l~~G~~g~GKT 1096 (1706)
T 3cmw_A 1017 SSTGSMSAIDENKQKALAAALGQIEKQFGKGSIMRLGEDRSMDVETISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKT 1096 (1706)
T ss_dssp -------CTTHHHHHHHHHHHHHHHHHHCGGGSEEGGGCGGGSCCEECCSCHHHHHHTSSSSEETTSEEEEECSTTSSHH
T ss_pred ceeeecCCccHHHHHHHHHHHHHHhhccCcccchhchhhhhccccccccCchhHHHHhccCCCCCCCEEEEEcCCCCChH
Confidence 78999999999999999999999843 344554 22 333444999999999999
Q ss_pred HHHHHHHHHcCCC
Q 035603 242 TMIAAMANCLNYD 254 (431)
Q Consensus 242 sla~aiA~~l~~~ 254 (431)
+||+++|.+...+
T Consensus 1097 ~la~~~~~~~~~~ 1109 (1706)
T 3cmw_A 1097 TLTLQVIAAAQRE 1109 (1706)
T ss_dssp HHHHHHHHHHHHT
T ss_pred HHHHHHHHHhhhc
Confidence 9999999876443
No 89
>1u0j_A DNA replication protein; AAA+ protein, P-loop atpases, helicase; HET: DNA ADP; 2.10A {Adeno-associated virus - 2} SCOP: c.37.1.20 PDB: 1s9h_A
Probab=98.48 E-value=6.7e-07 Score=85.39 Aligned_cols=29 Identities=31% Similarity=0.597 Sum_probs=25.9
Q ss_pred CCCceeEEeCCCCCcHHHHHHHHHHHcCC
Q 035603 225 AWKRGYLLFGPPGTGKSTMIAAMANCLNY 253 (431)
Q Consensus 225 ~~~rg~LL~GPPGtGKTsla~aiA~~l~~ 253 (431)
+++.+++||||||||||+++.|||+.++.
T Consensus 102 ~~~n~~~l~GppgtGKt~~a~ala~~~~l 130 (267)
T 1u0j_A 102 GKRNTIWLFGPATTGKTNIAEAIAHTVPF 130 (267)
T ss_dssp TTCCEEEEECSTTSSHHHHHHHHHHHSSC
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHhhhcc
Confidence 55679999999999999999999998654
No 90
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=98.47 E-value=2.2e-07 Score=98.97 Aligned_cols=53 Identities=36% Similarity=0.376 Sum_probs=42.3
Q ss_pred cCCCCccccccChhhHHHHHHHHHHHHhCHHHHHHhCCCCCceeEEeCCCCCcHHHHHHHHHHHcCCC
Q 035603 187 EHPATFDTLAMASKKKEAIKKDLIKFTEGKEYYAKIGKAWKRGYLLFGPPGTGKSTMIAAMANCLNYD 254 (431)
Q Consensus 187 ~~p~~f~~l~g~~~~k~~i~~~l~~~~~~~~~~~~~g~~~~rg~LL~GPPGtGKTsla~aiA~~l~~~ 254 (431)
-+|..|++++|.+.+++.+...+. ....+||+||||||||+++++||+.+...
T Consensus 35 ~rp~~l~~i~G~~~~l~~l~~~i~---------------~g~~vll~Gp~GtGKTtlar~ia~~l~~~ 87 (604)
T 3k1j_A 35 VPEKLIDQVIGQEHAVEVIKTAAN---------------QKRHVLLIGEPGTGKSMLGQAMAELLPTE 87 (604)
T ss_dssp CCSSHHHHCCSCHHHHHHHHHHHH---------------TTCCEEEECCTTSSHHHHHHHHHHTSCCS
T ss_pred ccccccceEECchhhHhhcccccc---------------CCCEEEEEeCCCCCHHHHHHHHhccCCcc
Confidence 357889999999888776654332 13589999999999999999999988643
No 91
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=98.36 E-value=4.7e-07 Score=82.07 Aligned_cols=69 Identities=20% Similarity=0.258 Sum_probs=48.4
Q ss_pred CCCCccccccChhhHHHHHHHHHHHHhCHHHHHHhCCC-CCceeEEeCCCCCcHHHHHHHHHHHc---CCCeEEecccC
Q 035603 188 HPATFDTLAMASKKKEAIKKDLIKFTEGKEYYAKIGKA-WKRGYLLFGPPGTGKSTMIAAMANCL---NYDVYDLELTS 262 (431)
Q Consensus 188 ~p~~f~~l~g~~~~k~~i~~~l~~~~~~~~~~~~~g~~-~~rg~LL~GPPGtGKTsla~aiA~~l---~~~i~~l~~~~ 262 (431)
.+.+|+++.+.+...+.+.+.+..++.. .+.. .+++++|+||||||||++++++|+++ +.+++.+++..
T Consensus 20 ~~~~f~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~l~G~~GtGKT~la~~i~~~~~~~~~~~~~~~~~~ 92 (202)
T 2w58_A 20 LRASLSDVDLNDDGRIKAIRFAERFVAE------YEPGKKMKGLYLHGSFGVGKTYLLAAIANELAKRNVSSLIVYVPE 92 (202)
T ss_dssp GCCCTTSSCCSSHHHHHHHHHHHHHHHH------CCSSCCCCEEEEECSTTSSHHHHHHHHHHHHHTTTCCEEEEEHHH
T ss_pred HcCCHhhccCCChhHHHHHHHHHHHHHH------hhhccCCCeEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEEhHH
Confidence 3578999988765445555556555542 1111 13799999999999999999999987 56776666543
No 92
>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*
Probab=98.28 E-value=5.4e-07 Score=88.22 Aligned_cols=96 Identities=14% Similarity=0.172 Sum_probs=58.0
Q ss_pred CCCCCceeEEeCCCCCcHHHHHHHHHHHcCCC--eEEecccC----c-CChHH-HHHHHHHhhh--c-----------cc
Q 035603 223 GKAWKRGYLLFGPPGTGKSTMIAAMANCLNYD--VYDLELTS----V-ENNNE-LRSLLVDISS--K-----------KK 281 (431)
Q Consensus 223 g~~~~rg~LL~GPPGtGKTsla~aiA~~l~~~--i~~l~~~~----~-~~~~~-l~~l~~~~~~--~-----------~~ 281 (431)
|++.++.+||+||||||||+|+.++|...|.. ++.++..+ . .+.+. +..+...... . ..
T Consensus 119 Gi~~gsviLI~GpPGsGKTtLAlqlA~~~G~~VlyIs~~~eE~v~~~~~~le~~l~~i~~~l~~~~LLVIDsI~aL~~~~ 198 (331)
T 2vhj_A 119 HRYASGMVIVTGKGNSGKTPLVHALGEALGGKDKYATVRFGEPLSGYNTDFNVFVDDIARAMLQHRVIVIDSLKNVIGAA 198 (331)
T ss_dssp EEEESEEEEEECSCSSSHHHHHHHHHHHHHTTSCCEEEEBSCSSTTCBCCHHHHHHHHHHHHHHCSEEEEECCTTTC---
T ss_pred CCCCCcEEEEEcCCCCCHHHHHHHHHHhCCCCEEEEEecchhhhhhhhcCHHHHHHHHHHHHhhCCEEEEeccccccccc
Confidence 55666778999999999999999999876555 44441111 1 11222 2222222221 1 11
Q ss_pred ch-------hhHHHHHHHHhcCcccCCCCceEEEEecCCCCCCChhh
Q 035603 282 KS-------NVTLSGLLNCIGGLWSTCGGERIIVFTTNHVDKLDPAL 321 (431)
Q Consensus 282 ~~-------~~~~s~lL~~ldg~~~~~~~~~ivI~TTN~~~~Ld~Al 321 (431)
.. ...+.++|..|+++....+ +.+|++|| +...|+++
T Consensus 199 ~~~s~~G~v~~~lrqlL~~L~~~~k~~g--vtVIlttn-p~s~deal 242 (331)
T 2vhj_A 199 GGNTTSGGISRGAFDLLSDIGAMAASRG--CVVIASLN-PTSNDDKI 242 (331)
T ss_dssp --------CCHHHHHHHHHHHHHHHHHT--CEEEEECC-CSSCSSSH
T ss_pred ccccccchHHHHHHHHHHHHHHHHhhCC--CEEEEEeC-CcccchhH
Confidence 11 3557788888887754433 78888888 66677664
No 93
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=98.25 E-value=2.4e-05 Score=95.79 Aligned_cols=119 Identities=19% Similarity=0.154 Sum_probs=86.9
Q ss_pred CceeEEeCCCCCcHHHHHHHHHHHcCCCeEEecccCcCChHHHHHHHHHhhhc---------ccchhhHHHHHHHHhc--
Q 035603 227 KRGYLLFGPPGTGKSTMIAAMANCLNYDVYDLELTSVENNNELRSLLVDISSK---------KKKSNVTLSGLLNCIG-- 295 (431)
Q Consensus 227 ~rg~LL~GPPGtGKTsla~aiA~~l~~~i~~l~~~~~~~~~~l~~l~~~~~~~---------~~~~~~~~s~lL~~ld-- 295 (431)
..|..+.||+|||||.+++.+|+.+|..++.++|++-.+...+.++|...... +.....+++.+...+.
T Consensus 604 ~~gg~~~GPaGtGKTet~k~La~~lgr~~~vfnC~~~~d~~~~g~i~~G~~~~GaW~cfDEfNrl~~~vLSvv~~qi~~I 683 (3245)
T 3vkg_A 604 RMGGNPFGPAGTGKTETVKALGSQLGRFVLVFCCDEGFDLQAMSRIFVGLCQCGAWGCFDEFNRLEERILSAVSQQIQTI 683 (3245)
T ss_dssp TCEEEEECSTTSSHHHHHHHHHHHTTCCEEEEECSSCCCHHHHHHHHHHHHHHTCEEEEETTTSSCHHHHHHHHHHHHHH
T ss_pred cCCCCCCCCCCCCHHHHHHHHHHHhCCeEEEEeCCCCCCHHHHHHHHhhHhhcCcEEEehhhhcCCHHHHHHHHHHHHHH
Confidence 35678999999999999999999999999999999887777888888776654 2233444444433222
Q ss_pred ---------------CcccCCCCceEEEEecC----CCCCCChhhhccCceeEEEEcCCCCHHHHHHHHHHh
Q 035603 296 ---------------GLWSTCGGERIIVFTTN----HVDKLDPALIRRGRMDKHIEMPYCCFEAFKVLAKNY 348 (431)
Q Consensus 296 ---------------g~~~~~~~~~ivI~TTN----~~~~Ld~AllRpGRfd~~I~~~~p~~~~r~~i~~~~ 348 (431)
|-.-.-.....|++|.| ....||++|.. || +.|.|+.|+.+...+++-.-
T Consensus 684 ~~a~~~~~~~~~~~~G~~i~l~~~~~vfiTmNpgY~gr~eLP~nLk~--lF-r~v~m~~Pd~~~i~ei~L~s 752 (3245)
T 3vkg_A 684 QVALKENSKEVELLGGKNISLHQDMGIFVTMNPGYAGRSNLPDNLKK--LF-RSMAMIKPDREMIAQVMLYS 752 (3245)
T ss_dssp HHHHHHTCSEECCC---CEECCTTCEEEECBCCCGGGCCCSCHHHHT--TE-EEEECCSCCHHHHHHHHHHT
T ss_pred HHHHHcCCCeEEecCCCEEeecCCeEEEEEeCCCccCcccChHHHHh--hc-EEEEEeCCCHHHHHHHHHHH
Confidence 21111122367888998 34689999999 77 66999999999888775443
No 94
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=98.19 E-value=1.9e-06 Score=84.20 Aligned_cols=67 Identities=24% Similarity=0.361 Sum_probs=47.1
Q ss_pred CCCccccccChhhHHHHHHHHHHHHhCHHHHHHhCCCCCceeEEeCCCCCcHHHHHHHHHHHcC----CCeEEeccc
Q 035603 189 PATFDTLAMASKKKEAIKKDLIKFTEGKEYYAKIGKAWKRGYLLFGPPGTGKSTMIAAMANCLN----YDVYDLELT 261 (431)
Q Consensus 189 p~~f~~l~g~~~~k~~i~~~l~~~~~~~~~~~~~g~~~~rg~LL~GPPGtGKTsla~aiA~~l~----~~i~~l~~~ 261 (431)
+.+|+++.+...-...+.+.+..|+.. .+...+++++|+||||||||+|+.+||+++. .+++.++..
T Consensus 120 ~~tfd~f~~~~~~~~~~~~~~~~~i~~------~~~~~~~~lll~G~~GtGKT~La~aia~~~~~~~g~~v~~~~~~ 190 (308)
T 2qgz_A 120 HIHLSDIDVNNASRMEAFSAILDFVEQ------YPSAEQKGLYLYGDMGIGKSYLLAAMAHELSEKKGVSTTLLHFP 190 (308)
T ss_dssp SCCGGGSCCCSHHHHHHHHHHHHHHHH------CSCSSCCEEEEECSTTSSHHHHHHHHHHHHHHHSCCCEEEEEHH
T ss_pred hCCHhhCcCCChHHHHHHHHHHHHHHh------ccccCCceEEEECCCCCCHHHHHHHHHHHHHHhcCCcEEEEEHH
Confidence 478999987654444455555555542 2212357999999999999999999998665 666666554
No 95
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=98.15 E-value=6e-06 Score=100.91 Aligned_cols=121 Identities=17% Similarity=0.320 Sum_probs=82.8
Q ss_pred CceeEEeCCCCCcHHHHHHH-HHHHcCCCeEEecccCcCChHHHHHHHHHhh-----------------hc---------
Q 035603 227 KRGYLLFGPPGTGKSTMIAA-MANCLNYDVYDLELTSVENNNELRSLLVDIS-----------------SK--------- 279 (431)
Q Consensus 227 ~rg~LL~GPPGtGKTsla~a-iA~~l~~~i~~l~~~~~~~~~~l~~l~~~~~-----------------~~--------- 279 (431)
++.+||+||||||||++++. +++..+.+++.++++.-.+...+...+.... ++
T Consensus 1304 ~~pvLL~GptGtGKT~li~~~L~~l~~~~~~~infS~~Tta~~l~~~~e~~~e~~~~~~~G~~~~p~~~Gk~~VlFiDDi 1383 (3245)
T 3vkg_A 1304 HRPLILCGPPGSGKTMTLTSTLRAFPDFEVVSLNFSSATTPELLLKTFDHHCEYKRTPSGETVLRPTQLGKWLVVFCDEI 1383 (3245)
T ss_dssp TCCCEEESSTTSSHHHHHHHHGGGCTTEEEEEECCCTTCCHHHHHHHHHHHEEEEECTTSCEEEEESSTTCEEEEEETTT
T ss_pred CCcEEEECCCCCCHHHHHHHHHHhCCCCceEEEEeeCCCCHHHHHHHHhhcceEEeccCCCcccCCCcCCceEEEEeccc
Confidence 46899999999999987754 5555577788899998888877877775311 11
Q ss_pred -----cc-chhhHHHHHHHHhc--CcccCCC------CceEEEEecCCC-----CCCChhhhccCceeEEEEcCCCCHHH
Q 035603 280 -----KK-KSNVTLSGLLNCIG--GLWSTCG------GERIIVFTTNHV-----DKLDPALIRRGRMDKHIEMPYCCFEA 340 (431)
Q Consensus 280 -----~~-~~~~~~s~lL~~ld--g~~~~~~------~~~ivI~TTN~~-----~~Ld~AllRpGRfd~~I~~~~p~~~~ 340 (431)
+. .....+..|...+| |+..... .++.+|+|+|.| ..|+|+|+| ||-. |.+++|+.++
T Consensus 1384 Nmp~~D~yGtQ~~ielLrqlld~~g~yd~~~~~~~~i~d~~~vaamnPp~~gGr~~l~~Rf~r--~F~v-i~i~~ps~es 1460 (3245)
T 3vkg_A 1384 NLPSTDKYGTQRVITFIRQMVEKGGFWRTSDHTWIKLDKIQFVGACNPPTDAGRVQLTHRFLR--HAPI-LLVDFPSTSS 1460 (3245)
T ss_dssp TCCCCCTTSCCHHHHHHHHHHHHSEEEETTTTEEEEESSEEEEEEECCTTSTTCCCCCHHHHT--TCCE-EECCCCCHHH
T ss_pred CCCCccccccccHHHHHHHHHHcCCeEECCCCeEEEecCeEEEEEcCCCCCCCCccCCHHHHh--hceE-EEeCCCCHHH
Confidence 00 11223333444443 2222111 246789999988 369999999 8865 9999999999
Q ss_pred HHHHHHHhhc
Q 035603 341 FKVLAKNYLE 350 (431)
Q Consensus 341 r~~i~~~~l~ 350 (431)
...|+..++.
T Consensus 1461 L~~If~til~ 1470 (3245)
T 3vkg_A 1461 LTQIYGTFNR 1470 (3245)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 9999776543
No 96
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=98.09 E-value=5.2e-06 Score=72.25 Aligned_cols=39 Identities=18% Similarity=0.262 Sum_probs=32.8
Q ss_pred CCceeEEeCCCCCcHHHHHHHHHHHc---CCCeEEecccCcC
Q 035603 226 WKRGYLLFGPPGTGKSTMIAAMANCL---NYDVYDLELTSVE 264 (431)
Q Consensus 226 ~~rg~LL~GPPGtGKTsla~aiA~~l---~~~i~~l~~~~~~ 264 (431)
....++|+||+|+|||+|++++++.+ |..++.++...+.
T Consensus 35 ~g~~~~l~G~~G~GKTtL~~~i~~~~~~~g~~~~~~~~~~~~ 76 (149)
T 2kjq_A 35 HGQFIYVWGEEGAGKSHLLQAWVAQALEAGKNAAYIDAASMP 76 (149)
T ss_dssp CCSEEEEESSSTTTTCHHHHHHHHHHHTTTCCEEEEETTTSC
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHHhcCCcEEEEcHHHhh
Confidence 35689999999999999999999988 7777777776654
No 97
>2r2a_A Uncharacterized protein; zonular occludens toxin, structural genomics, APC84050.2, PS protein structure initiative; HET: MSE; 1.82A {Neisseria meningitidis MC58}
Probab=97.96 E-value=5.3e-06 Score=75.88 Aligned_cols=107 Identities=13% Similarity=0.114 Sum_probs=63.9
Q ss_pred ceeEEeCCCCCcHHHHHHHHHHH--------cC-CCeEEecccCcCC---------------------hHHHHHHHHHhh
Q 035603 228 RGYLLFGPPGTGKSTMIAAMANC--------LN-YDVYDLELTSVEN---------------------NNELRSLLVDIS 277 (431)
Q Consensus 228 rg~LL~GPPGtGKTsla~aiA~~--------l~-~~i~~l~~~~~~~---------------------~~~l~~l~~~~~ 277 (431)
--+|++||||||||++|.+++.. .| .+++..++.++.. ...+..++....
T Consensus 6 mi~l~tG~pGsGKT~~a~~~~~~~~~~~~~~~g~r~v~~~~~~gL~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~ 85 (199)
T 2r2a_A 6 EICLITGTPGSGKTLKMVSMMANDEMFKPDENGIRRKVFTNIKGLKIPHTYIETDAKKLPKSTDEQLSAHDMYEWIKKPE 85 (199)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHCGGGSCCTTSCCCCEEECCTTBCSCCEEEECCTTTCSSCCSSCEEGGGHHHHTTSGG
T ss_pred eEEEEEeCCCCCHHHHHHHHHHHHHhhcccccCceEEEEecCCCccccccccchhhhhccccCcccccHHHHHHHhhccc
Confidence 36899999999999999887544 34 6666555443310 122333221111
Q ss_pred hc------ccch--------hhHHHHHHHHhcCcccCCCCceEEEEecCCCCCCChhhhccCceeEEEEcCCCCHH
Q 035603 278 SK------KKKS--------NVTLSGLLNCIGGLWSTCGGERIIVFTTNHVDKLDPALIRRGRMDKHIEMPYCCFE 339 (431)
Q Consensus 278 ~~------~~~~--------~~~~s~lL~~ldg~~~~~~~~~ivI~TTN~~~~Ld~AllRpGRfd~~I~~~~p~~~ 339 (431)
.+ ++.. ......+|..+..- .....-||++|++++.||.++.. |++.+++++.|...
T Consensus 86 ~~~~vliIDEAq~l~~~~~~~~e~~rll~~l~~~---r~~~~~iil~tq~~~~l~~~lr~--ri~~~~~l~~~~~~ 156 (199)
T 2r2a_A 86 NIGSIVIVDEAQDVWPARSAGSKIPENVQWLNTH---RHQGIDIFVLTQGPKLLDQNLRT--LVRKHYHIASNKMG 156 (199)
T ss_dssp GTTCEEEETTGGGTSBCCCTTCCCCHHHHGGGGT---TTTTCEEEEEESCGGGBCHHHHT--TEEEEEEEEECSSC
T ss_pred cCceEEEEEChhhhccCccccchhHHHHHHHHhc---CcCCeEEEEECCCHHHHhHHHHH--HhheEEEEcCcccC
Confidence 11 1111 01112355555432 23346778888889999999887 99999999986544
No 98
>3dzd_A Transcriptional regulator (NTRC family); sigma43 activator, AAA+ ATPase, response regulator, transcriptional activator, ATP-binding; HET: ADP; 2.40A {Aquifex aeolicus} PDB: 1zit_A 2jrl_A
Probab=97.96 E-value=3.4e-05 Score=77.09 Aligned_cols=172 Identities=17% Similarity=0.158 Sum_probs=98.5
Q ss_pred ccccChhhHHHHHHHHHHHHhCHHHHHHhCCCCCceeEEeCCCCCcHHHHHHHHHHHcCCC--eEEecccCcCChHHHHH
Q 035603 194 TLAMASKKKEAIKKDLIKFTEGKEYYAKIGKAWKRGYLLFGPPGTGKSTMIAAMANCLNYD--VYDLELTSVENNNELRS 271 (431)
Q Consensus 194 ~l~g~~~~k~~i~~~l~~~~~~~~~~~~~g~~~~rg~LL~GPPGtGKTsla~aiA~~l~~~--i~~l~~~~~~~~~~l~~ 271 (431)
.++|.......+.+.+..... ....+|++|++||||+.+|+++....+.. ++.+|++.+....--..
T Consensus 130 ~~ig~s~~~~~~~~~~~~~a~-----------~~~~vli~GesGtGKe~lAr~ih~~s~r~~~fv~vnc~~~~~~~~~~~ 198 (368)
T 3dzd_A 130 EFVGEHPKILEIKRLIPKIAK-----------SKAPVLITGESGTGKEIVARLIHRYSGRKGAFVDLNCASIPQELAESE 198 (368)
T ss_dssp CCCCCSHHHHHHHHHHHHHHT-----------SCSCEEEECCTTSSHHHHHHHHHHHHCCCSCEEEEESSSSCTTTHHHH
T ss_pred cccccchHHHHHHhhhhhhhc-----------cchhheEEeCCCchHHHHHHHHHHhccccCCcEEEEcccCChHHHHHH
Confidence 466776666666555443322 23569999999999999999999877654 99999998854433344
Q ss_pred HHHHhh------------------hc-------ccchhhHHHHHHHHhcCcc-cCCCC------ceEEEEecCCC-----
Q 035603 272 LLVDIS------------------SK-------KKKSNVTLSGLLNCIGGLW-STCGG------ERIIVFTTNHV----- 314 (431)
Q Consensus 272 l~~~~~------------------~~-------~~~~~~~~s~lL~~ldg~~-~~~~~------~~ivI~TTN~~----- 314 (431)
+|.... +. +.-+......||..|+.-. ..-|+ .+-+|+|||..
T Consensus 199 lfg~~~g~~tga~~~~~g~~~~a~~gtlfldei~~l~~~~Q~~Ll~~l~~~~~~~~g~~~~~~~~~rii~at~~~l~~~v 278 (368)
T 3dzd_A 199 LFGHEKGAFTGALTRKKGKLELADQGTLFLDEVGELDQRVQAKLLRVLETGSFTRLGGNQKIEVDIRVISATNKNLEEEI 278 (368)
T ss_dssp HHEECSCSSSSCCCCEECHHHHTTTSEEEEETGGGSCHHHHHHHHHHHHHSEECCBTCCCBEECCCEEEEEESSCHHHHH
T ss_pred hcCccccccCCcccccCChHhhcCCCeEEecChhhCCHHHHHHHHHHHHhCCcccCCCCcceeeeeEEEEecCCCHHHHH
Confidence 443221 11 2334456677787775311 11111 24578888852
Q ss_pred --CCCChhhhccCcee-EEEEcCCCCH--HHHHHHHHHhhchhcchhHHHHHhHhc-cCCCCHHHHHHHhcccCCCCC
Q 035603 315 --DKLDPALIRRGRMD-KHIEMPYCCF--EAFKVLAKNYLEIESHELFHEIGSLLG-ETDITPADVAENLMPKSDEDD 386 (431)
Q Consensus 315 --~~Ld~AllRpGRfd-~~I~~~~p~~--~~r~~i~~~~l~~~~~~~~~~i~~l~~-~~~~s~adI~~~l~~~~~~~~ 386 (431)
..+.+.|.. |+. ..|++|+... +....++.+|+.... ...-. ..++|+.-+. .|.....+++
T Consensus 279 ~~g~fr~dL~~--rl~~~~i~lPpLreR~~Di~~l~~~~l~~~~-------~~~~~~~~~~~~~a~~-~L~~~~wpGN 346 (368)
T 3dzd_A 279 KKGNFREDLYY--RLSVFQIYLPPLRERGKDVILLAEYFLKKFA-------KEYKKNCFELSEETKE-YLMKQEWKGN 346 (368)
T ss_dssp HTTSSCHHHHH--HHTSEEEECCCGGGSTTHHHHHHHHHHHHHH-------HHTTCCCCCBCHHHHH-HHHTCCCTTH
T ss_pred HcCCccHHHHH--HhCCeEEeCCChhhchhhHHHHHHHHHHHHH-------HHcCCCCCCcCHHHHH-HHHhCCCCcH
Confidence 123334443 332 3678887654 666777777764211 01111 1357776664 4444444554
No 99
>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20
Probab=97.95 E-value=0.0002 Score=69.63 Aligned_cols=56 Identities=29% Similarity=0.257 Sum_probs=41.1
Q ss_pred CCccccccChhhHHHHHHHHHHHHhCHHHHHHhCCCCCceeEEeCCCCCcHHHHHHHHHHHcCCCeEEecccC
Q 035603 190 ATFDTLAMASKKKEAIKKDLIKFTEGKEYYAKIGKAWKRGYLLFGPPGTGKSTMIAAMANCLNYDVYDLELTS 262 (431)
Q Consensus 190 ~~f~~l~g~~~~k~~i~~~l~~~~~~~~~~~~~g~~~~rg~LL~GPPGtGKTsla~aiA~~l~~~i~~l~~~~ 262 (431)
..-+.++|-++..+.|.+ + .. +.++++||+|+|||+|++.+++.++..++.+++..
T Consensus 10 ~~~~~~~gR~~el~~L~~-l----~~------------~~v~i~G~~G~GKT~L~~~~~~~~~~~~~~~~~~~ 65 (357)
T 2fna_A 10 DNRKDFFDREKEIEKLKG-L----RA------------PITLVLGLRRTGKSSIIKIGINELNLPYIYLDLRK 65 (357)
T ss_dssp CSGGGSCCCHHHHHHHHH-T----CS------------SEEEEEESTTSSHHHHHHHHHHHHTCCEEEEEGGG
T ss_pred CCHHHhcChHHHHHHHHH-h----cC------------CcEEEECCCCCCHHHHHHHHHHhcCCCEEEEEchh
Confidence 344667776655555433 2 21 48999999999999999999999887777777654
No 100
>1ny5_A Transcriptional regulator (NTRC family); AAA+ ATPase, sigma54 activator, bacterial transcription, DIM transcription; HET: ADP; 2.40A {Aquifex aeolicus} SCOP: c.23.1.1 c.37.1.20 PDB: 1ny6_A* 3m0e_A* 1zy2_A*
Probab=97.94 E-value=5.4e-05 Score=76.08 Aligned_cols=146 Identities=20% Similarity=0.154 Sum_probs=86.9
Q ss_pred ccccccChhhHHHHHHHHHHHHhCHHHHHHhCCCCCceeEEeCCCCCcHHHHHHHHHHHcC---CCeEEecccCcCChHH
Q 035603 192 FDTLAMASKKKEAIKKDLIKFTEGKEYYAKIGKAWKRGYLLFGPPGTGKSTMIAAMANCLN---YDVYDLELTSVENNNE 268 (431)
Q Consensus 192 f~~l~g~~~~k~~i~~~l~~~~~~~~~~~~~g~~~~rg~LL~GPPGtGKTsla~aiA~~l~---~~i~~l~~~~~~~~~~ 268 (431)
++.++|.....+.+.+.+.... +....+|++|++|||||++|++|....+ .+|+.+|++.+....-
T Consensus 136 ~~~~ig~s~~m~~l~~~i~~~a-----------~~~~~vli~Ge~GtGK~~lAr~ih~~s~r~~~~fv~v~~~~~~~~~~ 204 (387)
T 1ny5_A 136 EEEYVFESPKMKEILEKIKKIS-----------CAECPVLITGESGVGKEVVARLIHKLSDRSKEPFVALNVASIPRDIF 204 (387)
T ss_dssp CCCCCCCSHHHHHHHHHHHHHT-----------TCCSCEEEECSTTSSHHHHHHHHHHHSTTTTSCEEEEETTTSCHHHH
T ss_pred chhhhhccHHhhHHHHHHHHhc-----------CCCCCeEEecCCCcCHHHHHHHHHHhcCCCCCCeEEEecCCCCHHHH
Confidence 3456666666666666554422 2245689999999999999999998765 5899999998743322
Q ss_pred HHHHHHHhhh------------------c-------ccchhhHHHHHHHHhcCcc-----cC--CCCceEEEEecCCC--
Q 035603 269 LRSLLVDISS------------------K-------KKKSNVTLSGLLNCIGGLW-----ST--CGGERIIVFTTNHV-- 314 (431)
Q Consensus 269 l~~l~~~~~~------------------~-------~~~~~~~~s~lL~~ldg~~-----~~--~~~~~ivI~TTN~~-- 314 (431)
-..+|....+ . +.-+......||..|+.-. +. ..-.+-||+|||..
T Consensus 205 ~~elfg~~~g~~tga~~~~~g~~~~a~~gtlfldei~~l~~~~q~~Ll~~l~~~~~~~~g~~~~~~~~~rii~at~~~l~ 284 (387)
T 1ny5_A 205 EAELFGYEKGAFTGAVSSKEGFFELADGGTLFLDEIGELSLEAQAKLLRVIESGKFYRLGGRKEIEVNVRILAATNRNIK 284 (387)
T ss_dssp HHHHHCBCTTSSTTCCSCBCCHHHHTTTSEEEEESGGGCCHHHHHHHHHHHHHSEECCBTCCSBEECCCEEEEEESSCHH
T ss_pred HHHhcCCCCCCCCCcccccCCceeeCCCcEEEEcChhhCCHHHHHHHHHHHhcCcEEeCCCCceeeccEEEEEeCCCCHH
Confidence 2334432211 0 2233455666777765311 00 01135688999863
Q ss_pred -----CCCChhhhccCce-eEEEEcCCCC--HHHHHHHHHHhhc
Q 035603 315 -----DKLDPALIRRGRM-DKHIEMPYCC--FEAFKVLAKNYLE 350 (431)
Q Consensus 315 -----~~Ld~AllRpGRf-d~~I~~~~p~--~~~r~~i~~~~l~ 350 (431)
..+.+.|.- |+ ...|++|+.. .+....|+.+|+.
T Consensus 285 ~~~~~g~fr~dl~~--rl~~~~i~lPpLreR~~Di~~l~~~~l~ 326 (387)
T 1ny5_A 285 ELVKEGKFREDLYY--RLGVIEIEIPPLRERKEDIIPLANHFLK 326 (387)
T ss_dssp HHHHTTSSCHHHHH--HHTTEEEECCCGGGCHHHHHHHHHHHHH
T ss_pred HHHHcCCccHHHHH--hhcCCeecCCcchhccccHHHHHHHHHH
Confidence 234444443 33 3557777654 3666667777764
No 101
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}
Probab=97.91 E-value=0.00034 Score=67.86 Aligned_cols=55 Identities=16% Similarity=0.139 Sum_probs=40.2
Q ss_pred CCCccccccChhhHHHHHHHHHHHHhCHHHHHHhCCCCCceeEEeCCCCCcHHHHHHHHHHHcCCCeEEecc
Q 035603 189 PATFDTLAMASKKKEAIKKDLIKFTEGKEYYAKIGKAWKRGYLLFGPPGTGKSTMIAAMANCLNYDVYDLEL 260 (431)
Q Consensus 189 p~~f~~l~g~~~~k~~i~~~l~~~~~~~~~~~~~g~~~~rg~LL~GPPGtGKTsla~aiA~~l~~~i~~l~~ 260 (431)
|..-+.++|-++..+.|.+.+.. | +.++++||+|+|||+|++.+++.++ ++.+++
T Consensus 8 ~~~~~~~~gR~~el~~L~~~l~~-----------~----~~v~i~G~~G~GKT~Ll~~~~~~~~--~~~~~~ 62 (350)
T 2qen_A 8 KTRREDIFDREEESRKLEESLEN-----------Y----PLTLLLGIRRVGKSSLLRAFLNERP--GILIDC 62 (350)
T ss_dssp CCSGGGSCSCHHHHHHHHHHHHH-----------C----SEEEEECCTTSSHHHHHHHHHHHSS--EEEEEH
T ss_pred CCChHhcCChHHHHHHHHHHHhc-----------C----CeEEEECCCcCCHHHHHHHHHHHcC--cEEEEe
Confidence 34456678877776666554421 2 5899999999999999999999886 444544
No 102
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=97.91 E-value=3.8e-05 Score=69.47 Aligned_cols=33 Identities=24% Similarity=0.428 Sum_probs=29.1
Q ss_pred CceeEEeCCCCCcHHHHHHHHHHHcCCCeEEec
Q 035603 227 KRGYLLFGPPGTGKSTMIAAMANCLNYDVYDLE 259 (431)
Q Consensus 227 ~rg~LL~GPPGtGKTsla~aiA~~l~~~i~~l~ 259 (431)
++-++|.||||+||||+++.|+..+|+.+++.+
T Consensus 18 ~~~I~l~G~~GsGKSTla~~L~~~lg~~~i~~d 50 (202)
T 3t61_A 18 PGSIVVMGVSGSGKSSVGEAIAEACGYPFIEGD 50 (202)
T ss_dssp SSCEEEECSTTSCHHHHHHHHHHHHTCCEEEGG
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCCEEEeCC
Confidence 356899999999999999999999998877654
No 103
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=97.84 E-value=9.6e-06 Score=72.18 Aligned_cols=34 Identities=24% Similarity=0.330 Sum_probs=30.5
Q ss_pred CceeEEeCCCCCcHHHHHHHHHHHcCCCeEEecc
Q 035603 227 KRGYLLFGPPGTGKSTMIAAMANCLNYDVYDLEL 260 (431)
Q Consensus 227 ~rg~LL~GPPGtGKTsla~aiA~~l~~~i~~l~~ 260 (431)
++.++|.||||||||++++++|..+|+++++.+.
T Consensus 5 ~~~i~l~G~~GsGKst~a~~La~~l~~~~i~~d~ 38 (185)
T 3trf_A 5 LTNIYLIGLMGAGKTSVGSQLAKLTKRILYDSDK 38 (185)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHHCCCEEEHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHhCCCEEEChH
Confidence 4579999999999999999999999999987653
No 104
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=97.80 E-value=1.2e-05 Score=72.79 Aligned_cols=34 Identities=35% Similarity=0.352 Sum_probs=30.5
Q ss_pred CCceeEEeCCCCCcHHHHHHHHHHHcCCCeEEec
Q 035603 226 WKRGYLLFGPPGTGKSTMIAAMANCLNYDVYDLE 259 (431)
Q Consensus 226 ~~rg~LL~GPPGtGKTsla~aiA~~l~~~i~~l~ 259 (431)
..+.++|.|||||||||++++||..+++.+++.+
T Consensus 24 ~~~~i~l~G~~GsGKsTl~~~La~~l~~~~i~~d 57 (199)
T 3vaa_A 24 AMVRIFLTGYMGAGKTTLGKAFARKLNVPFIDLD 57 (199)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHHHTCCEEEHH
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHHcCCCEEcch
Confidence 3467999999999999999999999999988765
No 105
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=97.78 E-value=1.4e-05 Score=71.40 Aligned_cols=35 Identities=26% Similarity=0.302 Sum_probs=30.2
Q ss_pred CCCCceeEEeCCCCCcHHHHHHHHHHHcCCCeEEe
Q 035603 224 KAWKRGYLLFGPPGTGKSTMIAAMANCLNYDVYDL 258 (431)
Q Consensus 224 ~~~~rg~LL~GPPGtGKTsla~aiA~~l~~~i~~l 258 (431)
.+.+.-++|.||||+||||+++.+|..+++.++..
T Consensus 2 ~~~~~~I~l~G~~GsGKST~~~~L~~~l~~~~i~~ 36 (193)
T 2rhm_A 2 MQTPALIIVTGHPATGKTTLSQALATGLRLPLLSK 36 (193)
T ss_dssp CSCCEEEEEEESTTSSHHHHHHHHHHHHTCCEEEH
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHcCCeEecH
Confidence 34556789999999999999999999999887764
No 106
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=97.78 E-value=1.8e-05 Score=69.75 Aligned_cols=33 Identities=21% Similarity=0.308 Sum_probs=29.4
Q ss_pred ceeEEeCCCCCcHHHHHHHHHHHcCCCeEEecc
Q 035603 228 RGYLLFGPPGTGKSTMIAAMANCLNYDVYDLEL 260 (431)
Q Consensus 228 rg~LL~GPPGtGKTsla~aiA~~l~~~i~~l~~ 260 (431)
+-++|.||||+||||+++++|..++.+++.++.
T Consensus 4 ~~i~l~G~~GsGKST~a~~La~~l~~~~~~~~~ 36 (178)
T 1qhx_A 4 RMIILNGGSSAGKSGIVRCLQSVLPEPWLAFGV 36 (178)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHSSSCEEEEEH
T ss_pred eEEEEECCCCCCHHHHHHHHHHhcCCCeEEecc
Confidence 568999999999999999999999988887553
No 107
>1jr3_D DNA polymerase III, delta subunit; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1jqj_C* 1xxh_A* 1xxi_A* 3glf_A* 3glg_A* 3glh_A* 3gli_A*
Probab=97.71 E-value=9e-05 Score=72.77 Aligned_cols=115 Identities=12% Similarity=0.131 Sum_probs=72.9
Q ss_pred CCceeEEeCCCCCcHHHHHHHHHHHc---CC-CeEEecccCcCChHHHHHHHHHhhhc--------------cc-chhhH
Q 035603 226 WKRGYLLFGPPGTGKSTMIAAMANCL---NY-DVYDLELTSVENNNELRSLLVDISSK--------------KK-KSNVT 286 (431)
Q Consensus 226 ~~rg~LL~GPPGtGKTsla~aiA~~l---~~-~i~~l~~~~~~~~~~l~~l~~~~~~~--------------~~-~~~~~ 286 (431)
.+..||||||+|+||++.++++++.+ +. +...+... ...++++++..+... +. -+...
T Consensus 17 ~~~~yl~~G~e~~~~~~~~~~l~~~~~~~~~~~~~~~~~~---~~~~~~~l~~~~~~~plf~~~kvvii~~~~~kl~~~~ 93 (343)
T 1jr3_D 17 LRAAYLLLGNDPLLLQESQDAVRQVAAAQGFEEHHTFSID---PNTDWNAIFSLCQAMSLFASRQTLLLLLPENGPNAAI 93 (343)
T ss_dssp CCSEEEEEESCHHHHHHHHHHHHHHHHHHTCCEEEEEECC---TTCCHHHHHHHHHHHHHCCSCEEEEEECCSSCCCTTH
T ss_pred CCcEEEEECCcHHHHHHHHHHHHHHHHhCCCCeeEEEEec---CCCCHHHHHHHhcCcCCccCCeEEEEECCCCCCChHH
Confidence 35689999999999999999998865 32 21222221 123455555443322 22 34566
Q ss_pred HHHHHHHhcCcccCCCCceEEEEecCCC------CCCChhhhccCceeEEEEcCCCCHHHHHHHHHHhhc
Q 035603 287 LSGLLNCIGGLWSTCGGERIIVFTTNHV------DKLDPALIRRGRMDKHIEMPYCCFEAFKVLAKNYLE 350 (431)
Q Consensus 287 ~s~lL~~ldg~~~~~~~~~ivI~TTN~~------~~Ld~AllRpGRfd~~I~~~~p~~~~r~~i~~~~l~ 350 (431)
.+.|+..+... .+..++|++|+.+ ..+.+++...| ..+++..++..+....++..+.
T Consensus 94 ~~aLl~~le~p----~~~~~~il~~~~~~~~~~~~k~~~~i~sr~---~~~~~~~l~~~~l~~~l~~~~~ 156 (343)
T 1jr3_D 94 NEQLLTLTGLL----HDDLLLIVRGNKLSKAQENAAWFTALANRS---VQVTCQTPEQAQLPRWVAARAK 156 (343)
T ss_dssp HHHHHHHHTTC----BTTEEEEEEESCCCTTTTTSHHHHHHTTTC---EEEEECCCCTTHHHHHHHHHHH
T ss_pred HHHHHHHHhcC----CCCeEEEEEcCCCChhhHhhHHHHHHHhCc---eEEEeeCCCHHHHHHHHHHHHH
Confidence 78888888854 2335666555543 34667887744 5788888888777766666653
No 108
>3f8t_A Predicted ATPase involved in replication control, CDC46/MCM family; helicase, MCM homolog, DNA replication, ATP-binding, DNA-binding; 1.90A {Methanopyrus kandleri AV19}
Probab=97.66 E-value=6.2e-05 Score=77.12 Aligned_cols=131 Identities=13% Similarity=0.024 Sum_probs=74.8
Q ss_pred cccChhhHHHHHHHHHHHHhC-HHHHHHhCCCCCceeEEeCCCCCcHHHHHHHH-HHHcCCCeEEecccCcCChHHHH--
Q 035603 195 LAMASKKKEAIKKDLIKFTEG-KEYYAKIGKAWKRGYLLFGPPGTGKSTMIAAM-ANCLNYDVYDLELTSVENNNELR-- 270 (431)
Q Consensus 195 l~g~~~~k~~i~~~l~~~~~~-~~~~~~~g~~~~rg~LL~GPPGtGKTsla~ai-A~~l~~~i~~l~~~~~~~~~~l~-- 270 (431)
|.|.+++|..|.-.+ ... +. ....-.+||.|+||| ||++++++ ++.+...++...... +...|-
T Consensus 215 I~G~e~vK~aLll~L---~GG~~k------~rgdihVLL~G~PGt-KS~Lar~i~~~i~pR~~ft~g~~s--s~~gLt~s 282 (506)
T 3f8t_A 215 LPGAEEVGKMLALQL---FSCVGK------NSERLHVLLAGYPVV-CSEILHHVLDHLAPRGVYVDLRRT--ELTDLTAV 282 (506)
T ss_dssp STTCHHHHHHHHHHH---TTCCSS------GGGCCCEEEESCHHH-HHHHHHHHHHHTCSSEEEEEGGGC--CHHHHSEE
T ss_pred cCCCHHHHHHHHHHH---cCCccc------cCCceeEEEECCCCh-HHHHHHHHHHHhCCCeEEecCCCC--CccCceEE
Confidence 688888877764322 221 11 111225999999999 99999999 777655444322111 111110
Q ss_pred -----------HHHHHhhhc-------ccchhhHHHHHHHHhcCcc-c----CCCCceEEEEecCCCC-----------C
Q 035603 271 -----------SLLVDISSK-------KKKSNVTLSGLLNCIGGLW-S----TCGGERIIVFTTNHVD-----------K 316 (431)
Q Consensus 271 -----------~l~~~~~~~-------~~~~~~~~s~lL~~ldg~~-~----~~~~~~ivI~TTN~~~-----------~ 316 (431)
..+..+.+. +.....+.+.|+..|..-. + .-.....||+|+|..+ .
T Consensus 283 ~r~~tG~~~~~G~l~LAdgGvl~lDEIn~~~~~~qsaLlEaMEe~~VtI~G~~lparf~VIAA~NP~~~yd~~~s~~~~~ 362 (506)
T 3f8t_A 283 LKEDRGWALRAGAAVLADGGILAVDHLEGAPEPHRWALMEAMDKGTVTVDGIALNARCAVLAAINPGEQWPSDPPIARID 362 (506)
T ss_dssp EEESSSEEEEECHHHHTTTSEEEEECCTTCCHHHHHHHHHHHHHSEEEETTEEEECCCEEEEEECCCC--CCSCGGGGCC
T ss_pred EEcCCCcccCCCeeEEcCCCeeehHhhhhCCHHHHHHHHHHHhCCcEEECCEEcCCCeEEEEEeCcccccCCCCCccccC
Confidence 001111111 3445667788888875210 0 1123478999999876 8
Q ss_pred CChhhhccCceeEEE-EcCCCCHH
Q 035603 317 LDPALIRRGRMDKHI-EMPYCCFE 339 (431)
Q Consensus 317 Ld~AllRpGRfd~~I-~~~~p~~~ 339 (431)
|+++++. |||..+ .+++|+.+
T Consensus 363 Lp~alLD--RFDLi~i~~d~pd~e 384 (506)
T 3f8t_A 363 LDQDFLS--HFDLIAFLGVDPRPG 384 (506)
T ss_dssp SCHHHHT--TCSEEEETTC-----
T ss_pred CChHHhh--heeeEEEecCCCChh
Confidence 9999999 998865 46777644
No 109
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=97.65 E-value=2.9e-05 Score=67.78 Aligned_cols=31 Identities=29% Similarity=0.288 Sum_probs=28.2
Q ss_pred eeEEeCCCCCcHHHHHHHHHHHcCCCeEEec
Q 035603 229 GYLLFGPPGTGKSTMIAAMANCLNYDVYDLE 259 (431)
Q Consensus 229 g~LL~GPPGtGKTsla~aiA~~l~~~i~~l~ 259 (431)
-++|.||||+||||+++.+|..+++.+++.+
T Consensus 3 ~i~l~G~~GsGKsT~~~~L~~~l~~~~i~~d 33 (173)
T 3kb2_A 3 LIILEGPDCCFKSTVAAKLSKELKYPIIKGS 33 (173)
T ss_dssp EEEEECSSSSSHHHHHHHHHHHHCCCEEECC
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCeeecCc
Confidence 4789999999999999999999999887765
No 110
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=97.64 E-value=2.4e-05 Score=69.08 Aligned_cols=31 Identities=32% Similarity=0.461 Sum_probs=28.2
Q ss_pred eeEEeCCCCCcHHHHHHHHHHHcCCCeEEec
Q 035603 229 GYLLFGPPGTGKSTMIAAMANCLNYDVYDLE 259 (431)
Q Consensus 229 g~LL~GPPGtGKTsla~aiA~~l~~~i~~l~ 259 (431)
.++|.|||||||||++++||..+++++++.+
T Consensus 6 ~i~i~G~~GsGKsTla~~La~~l~~~~~d~d 36 (175)
T 1via_A 6 NIVFIGFMGSGKSTLARALAKDLDLVFLDSD 36 (175)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHHTCEEEEHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHHcCCCEEccc
Confidence 5889999999999999999999999888754
No 111
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=97.63 E-value=3.1e-05 Score=68.85 Aligned_cols=32 Identities=34% Similarity=0.558 Sum_probs=29.1
Q ss_pred eeEEeCCCCCcHHHHHHHHHHHcCCCeEEecc
Q 035603 229 GYLLFGPPGTGKSTMIAAMANCLNYDVYDLEL 260 (431)
Q Consensus 229 g~LL~GPPGtGKTsla~aiA~~l~~~i~~l~~ 260 (431)
-++|.|+||+|||++++.+|..+|+++++.+.
T Consensus 4 ~I~l~G~~GsGKsT~a~~La~~lg~~~id~D~ 35 (184)
T 2iyv_A 4 KAVLVGLPGSGKSTIGRRLAKALGVGLLDTDV 35 (184)
T ss_dssp SEEEECSTTSSHHHHHHHHHHHHTCCEEEHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHcCCCEEeCch
Confidence 48999999999999999999999999887653
No 112
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=97.62 E-value=3e-05 Score=67.90 Aligned_cols=33 Identities=27% Similarity=0.519 Sum_probs=29.8
Q ss_pred ceeEEeCCCCCcHHHHHHHHHHHcCCCeEEecc
Q 035603 228 RGYLLFGPPGTGKSTMIAAMANCLNYDVYDLEL 260 (431)
Q Consensus 228 rg~LL~GPPGtGKTsla~aiA~~l~~~i~~l~~ 260 (431)
..++|.|+|||||||+++.+|..+|+++++.+.
T Consensus 8 ~~i~l~G~~GsGKSTva~~La~~lg~~~id~D~ 40 (168)
T 1zuh_A 8 QHLVLIGFMGSGKSSLAQELGLALKLEVLDTDM 40 (168)
T ss_dssp CEEEEESCTTSSHHHHHHHHHHHHTCCEEEHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHHHhCCCEEEChH
Confidence 468999999999999999999999999988653
No 113
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=97.62 E-value=3.4e-05 Score=69.01 Aligned_cols=33 Identities=27% Similarity=0.461 Sum_probs=29.3
Q ss_pred CceeEEeCCCCCcHHHHHHHHHHH-cCCCeEEec
Q 035603 227 KRGYLLFGPPGTGKSTMIAAMANC-LNYDVYDLE 259 (431)
Q Consensus 227 ~rg~LL~GPPGtGKTsla~aiA~~-l~~~i~~l~ 259 (431)
+.-++|.||||||||++++.+|.. +|+++++++
T Consensus 10 ~~~I~l~G~~GsGKSTv~~~La~~l~g~~~id~d 43 (184)
T 1y63_A 10 GINILITGTPGTGKTSMAEMIAAELDGFQHLEVG 43 (184)
T ss_dssp SCEEEEECSTTSSHHHHHHHHHHHSTTEEEEEHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhcCCCEEeeHH
Confidence 456899999999999999999999 798888765
No 114
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=97.62 E-value=3.4e-05 Score=68.37 Aligned_cols=33 Identities=27% Similarity=0.391 Sum_probs=29.3
Q ss_pred CceeEEeCCCCCcHHHHHHHHHHHcCCCeEEec
Q 035603 227 KRGYLLFGPPGTGKSTMIAAMANCLNYDVYDLE 259 (431)
Q Consensus 227 ~rg~LL~GPPGtGKTsla~aiA~~l~~~i~~l~ 259 (431)
++.++|.||||+|||++++++|..+++.++..+
T Consensus 11 ~~~i~i~G~~GsGKst~~~~l~~~~~~~~~~~d 43 (180)
T 3iij_A 11 LPNILLTGTPGVGKTTLGKELASKSGLKYINVG 43 (180)
T ss_dssp CCCEEEECSTTSSHHHHHHHHHHHHCCEEEEHH
T ss_pred CCeEEEEeCCCCCHHHHHHHHHHHhCCeEEEHH
Confidence 456999999999999999999999998887653
No 115
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=97.59 E-value=3.7e-05 Score=67.43 Aligned_cols=31 Identities=45% Similarity=0.704 Sum_probs=27.6
Q ss_pred ceeEEeCCCCCcHHHHHHHHHHHcCCCeEEe
Q 035603 228 RGYLLFGPPGTGKSTMIAAMANCLNYDVYDL 258 (431)
Q Consensus 228 rg~LL~GPPGtGKTsla~aiA~~l~~~i~~l 258 (431)
.-+.|.|||||||||+++.||..++..+++.
T Consensus 5 ~~i~l~G~~GsGKSTl~~~La~~l~~~~id~ 35 (173)
T 1kag_A 5 RNIFLVGPMGAGKSTIGRQLAQQLNMEFYDS 35 (173)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHHTTCEEEEH
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhCCCEEec
Confidence 4689999999999999999999999877654
No 116
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=97.53 E-value=5.6e-05 Score=68.25 Aligned_cols=33 Identities=33% Similarity=0.495 Sum_probs=29.1
Q ss_pred CceeEEeCCCCCcHHHHHHHHHHHcCCCeEEec
Q 035603 227 KRGYLLFGPPGTGKSTMIAAMANCLNYDVYDLE 259 (431)
Q Consensus 227 ~rg~LL~GPPGtGKTsla~aiA~~l~~~i~~l~ 259 (431)
+.-++|.||||+||||+++.||..++++++.++
T Consensus 20 ~~~I~l~G~~GsGKST~a~~La~~l~~~~i~~d 52 (201)
T 2cdn_A 20 HMRVLLLGPPGAGKGTQAVKLAEKLGIPQISTG 52 (201)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHHTCCEEEHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCCcEEehh
Confidence 345889999999999999999999999888763
No 117
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=97.52 E-value=4.5e-05 Score=66.82 Aligned_cols=32 Identities=25% Similarity=0.488 Sum_probs=28.7
Q ss_pred ceeEEeCCCCCcHHHHHHHHHHHcCCCeEEec
Q 035603 228 RGYLLFGPPGTGKSTMIAAMANCLNYDVYDLE 259 (431)
Q Consensus 228 rg~LL~GPPGtGKTsla~aiA~~l~~~i~~l~ 259 (431)
+-++|.|+||+|||++++.+|..+|+++++.+
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~~lg~~~id~d 34 (173)
T 1e6c_A 3 EPIFMVGARGCGMTTVGRELARALGYEFVDTD 34 (173)
T ss_dssp CCEEEESCTTSSHHHHHHHHHHHHTCEEEEHH
T ss_pred ceEEEECCCCCCHHHHHHHHHHHhCCcEEccc
Confidence 35899999999999999999999999888754
No 118
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=97.51 E-value=0.00011 Score=70.79 Aligned_cols=35 Identities=26% Similarity=0.392 Sum_probs=28.1
Q ss_pred CCceeEEeCCCCCcHHHHHHHHHHHcCCCeEEecc
Q 035603 226 WKRGYLLFGPPGTGKSTMIAAMANCLNYDVYDLEL 260 (431)
Q Consensus 226 ~~rg~LL~GPPGtGKTsla~aiA~~l~~~i~~l~~ 260 (431)
.+.-++|.||||+||||++++++..++..++.++.
T Consensus 32 ~~~livl~G~sGsGKSTla~~L~~~~~~~~~~Is~ 66 (287)
T 1gvn_B 32 SPTAFLLGGQPGSGKTSLRSAIFEETQGNVIVIDN 66 (287)
T ss_dssp SCEEEEEECCTTSCTHHHHHHHHHHTTTCCEEECT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhCCCeEEEec
Confidence 35668899999999999999999998544555554
No 119
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=97.50 E-value=5.3e-05 Score=67.42 Aligned_cols=33 Identities=24% Similarity=0.367 Sum_probs=28.7
Q ss_pred CceeEEeCCCCCcHHHHHHHHHHHcCCCeEEec
Q 035603 227 KRGYLLFGPPGTGKSTMIAAMANCLNYDVYDLE 259 (431)
Q Consensus 227 ~rg~LL~GPPGtGKTsla~aiA~~l~~~i~~l~ 259 (431)
+.-++|.|||||||||+++.+|..+++++++.+
T Consensus 3 ~~~I~l~G~~GsGKsT~a~~L~~~~~~~~i~~d 35 (196)
T 1tev_A 3 PLVVFVLGGPGAGKGTQCARIVEKYGYTHLSAG 35 (196)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHCCEEEEHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHhCCeEEeHH
Confidence 346889999999999999999999998877653
No 120
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=97.49 E-value=6e-05 Score=71.19 Aligned_cols=32 Identities=28% Similarity=0.464 Sum_probs=29.2
Q ss_pred eeEEeCCCCCcHHHHHHHHHHHcCCCeEEecc
Q 035603 229 GYLLFGPPGTGKSTMIAAMANCLNYDVYDLEL 260 (431)
Q Consensus 229 g~LL~GPPGtGKTsla~aiA~~l~~~i~~l~~ 260 (431)
-++|.||||||||+++++||..+++.++..|.
T Consensus 3 li~I~G~~GSGKSTla~~La~~~~~~~i~~D~ 34 (253)
T 2ze6_A 3 LHLIYGPTCSGKTDMAIQIAQETGWPVVALDR 34 (253)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHCCCEEECCS
T ss_pred EEEEECCCCcCHHHHHHHHHhcCCCeEEeccH
Confidence 47899999999999999999999999988765
No 121
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=97.49 E-value=5.3e-05 Score=65.86 Aligned_cols=29 Identities=28% Similarity=0.361 Sum_probs=26.3
Q ss_pred eeEEeCCCCCcHHHHHHHHHHHcCCCeEEe
Q 035603 229 GYLLFGPPGTGKSTMIAAMANCLNYDVYDL 258 (431)
Q Consensus 229 g~LL~GPPGtGKTsla~aiA~~l~~~i~~l 258 (431)
-++|.||||+||||+++.+ ..+|++++.+
T Consensus 3 ~I~l~G~~GsGKsT~a~~L-~~~g~~~i~~ 31 (179)
T 3lw7_A 3 VILITGMPGSGKSEFAKLL-KERGAKVIVM 31 (179)
T ss_dssp EEEEECCTTSCHHHHHHHH-HHTTCEEEEH
T ss_pred EEEEECCCCCCHHHHHHHH-HHCCCcEEEH
Confidence 5789999999999999999 9999988765
No 122
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=97.46 E-value=6.8e-05 Score=65.36 Aligned_cols=31 Identities=32% Similarity=0.458 Sum_probs=28.1
Q ss_pred eeEEeCCCCCcHHHHHHHHHHHcCCCeEEec
Q 035603 229 GYLLFGPPGTGKSTMIAAMANCLNYDVYDLE 259 (431)
Q Consensus 229 g~LL~GPPGtGKTsla~aiA~~l~~~i~~l~ 259 (431)
-++|.|+||+||||+++.+|..+++++++.+
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~l~~~~i~~d 32 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVGSLLSRSLNIPFYDVD 32 (168)
T ss_dssp EEEEESCTTSCHHHHHHHHHHHHTCCEEEHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHhCCCEEECc
Confidence 3789999999999999999999999888754
No 123
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=97.46 E-value=6.7e-05 Score=66.59 Aligned_cols=33 Identities=21% Similarity=0.348 Sum_probs=29.2
Q ss_pred CceeEEeCCCCCcHHHHHHHHHHHcCCCeEEec
Q 035603 227 KRGYLLFGPPGTGKSTMIAAMANCLNYDVYDLE 259 (431)
Q Consensus 227 ~rg~LL~GPPGtGKTsla~aiA~~l~~~i~~l~ 259 (431)
++-++|.|||||||||+++.+|..+++.+++.+
T Consensus 6 ~~~I~l~G~~GsGKsT~~~~L~~~l~~~~i~~d 38 (194)
T 1qf9_A 6 PNVVFVLGGPGSGKGTQCANIVRDFGWVHLSAG 38 (194)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHHHCCEEEEHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHhCCeEeeHH
Confidence 456899999999999999999999998887763
No 124
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=97.45 E-value=5.4e-05 Score=67.20 Aligned_cols=32 Identities=28% Similarity=0.601 Sum_probs=27.9
Q ss_pred ceeEEeCCCCCcHHHHHHHHHHHcCCCeEEec
Q 035603 228 RGYLLFGPPGTGKSTMIAAMANCLNYDVYDLE 259 (431)
Q Consensus 228 rg~LL~GPPGtGKTsla~aiA~~l~~~i~~l~ 259 (431)
.-++|.|||||||||+++.+|..+|+.+++.+
T Consensus 5 ~~I~l~G~~GsGKST~~~~La~~l~~~~i~~d 36 (186)
T 3cm0_A 5 QAVIFLGPPGAGKGTQASRLAQELGFKKLSTG 36 (186)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHHTCEEECHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhCCeEecHH
Confidence 35889999999999999999999998777653
No 125
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=97.45 E-value=6.8e-05 Score=66.96 Aligned_cols=33 Identities=21% Similarity=0.356 Sum_probs=29.3
Q ss_pred CceeEEeCCCCCcHHHHHHHHHHHcCCCeEEec
Q 035603 227 KRGYLLFGPPGTGKSTMIAAMANCLNYDVYDLE 259 (431)
Q Consensus 227 ~rg~LL~GPPGtGKTsla~aiA~~l~~~i~~l~ 259 (431)
+.-++|.|||||||||+++.+|..+++++++.+
T Consensus 9 ~~~I~l~G~~GsGKsT~~~~La~~l~~~~i~~d 41 (196)
T 2c95_A 9 TNIIFVVGGPGSGKGTQCEKIVQKYGYTHLSTG 41 (196)
T ss_dssp SCEEEEEECTTSSHHHHHHHHHHHHCCEEEEHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHhCCeEEcHH
Confidence 356899999999999999999999999887664
No 126
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=97.43 E-value=4.9e-05 Score=66.83 Aligned_cols=30 Identities=27% Similarity=0.345 Sum_probs=24.9
Q ss_pred ceeEEeCCCCCcHHHHHHHHHH-HcCCCeEE
Q 035603 228 RGYLLFGPPGTGKSTMIAAMAN-CLNYDVYD 257 (431)
Q Consensus 228 rg~LL~GPPGtGKTsla~aiA~-~l~~~i~~ 257 (431)
.-++|.||||+||||+++.++. .+++.++.
T Consensus 3 ~~I~i~G~~GsGKST~a~~L~~~~~~~~~i~ 33 (181)
T 1ly1_A 3 KIILTIGCPGSGKSTWAREFIAKNPGFYNIN 33 (181)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHSTTEEEEC
T ss_pred eEEEEecCCCCCHHHHHHHHHhhcCCcEEec
Confidence 4689999999999999999999 56655443
No 127
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=97.42 E-value=7.2e-05 Score=69.02 Aligned_cols=32 Identities=19% Similarity=0.380 Sum_probs=28.6
Q ss_pred CceeEEeCCCCCcHHHHHHHHHHHcCCCeEEe
Q 035603 227 KRGYLLFGPPGTGKSTMIAAMANCLNYDVYDL 258 (431)
Q Consensus 227 ~rg~LL~GPPGtGKTsla~aiA~~l~~~i~~l 258 (431)
+.-++|.||||+||||+++.||..+++.+++.
T Consensus 7 ~~~I~l~G~~GsGKsT~a~~La~~l~~~~i~~ 38 (227)
T 1zd8_A 7 LLRAVIMGAPGSGKGTVSSRITTHFELKHLSS 38 (227)
T ss_dssp CCEEEEEECTTSSHHHHHHHHHHHSSSEEEEH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHcCCeEEec
Confidence 45689999999999999999999999887765
No 128
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=97.41 E-value=8.5e-05 Score=67.78 Aligned_cols=30 Identities=23% Similarity=0.318 Sum_probs=27.3
Q ss_pred eEEeCCCCCcHHHHHHHHHHHcCCCeEEec
Q 035603 230 YLLFGPPGTGKSTMIAAMANCLNYDVYDLE 259 (431)
Q Consensus 230 ~LL~GPPGtGKTsla~aiA~~l~~~i~~l~ 259 (431)
++|.||||+||||+++.+|..+++.++..+
T Consensus 3 I~l~G~~GsGKsT~a~~L~~~~~~~~i~~d 32 (216)
T 3dl0_A 3 LVLMGLPGAGKGTQGERIVEKYGIPHISTG 32 (216)
T ss_dssp EEEECSTTSSHHHHHHHHHHHSSCCEEEHH
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCcEEeHH
Confidence 789999999999999999999998887663
No 129
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=97.41 E-value=7.3e-05 Score=66.90 Aligned_cols=33 Identities=18% Similarity=0.348 Sum_probs=29.0
Q ss_pred CceeEEeCCCCCcHHHHHHHHHHHcCCCeEEec
Q 035603 227 KRGYLLFGPPGTGKSTMIAAMANCLNYDVYDLE 259 (431)
Q Consensus 227 ~rg~LL~GPPGtGKTsla~aiA~~l~~~i~~l~ 259 (431)
+.-++|.||||+||||+++.+|..+++.+++.+
T Consensus 12 ~~~I~l~G~~GsGKsT~a~~L~~~l~~~~i~~d 44 (199)
T 2bwj_A 12 CKIIFIIGGPGSGKGTQCEKLVEKYGFTHLSTG 44 (199)
T ss_dssp SCEEEEEECTTSSHHHHHHHHHHHHTCEEEEHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHhCCeEEcHH
Confidence 456899999999999999999999998877654
No 130
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=97.41 E-value=6.9e-05 Score=66.50 Aligned_cols=30 Identities=23% Similarity=0.417 Sum_probs=26.3
Q ss_pred ceeEEeCCCCCcHHHHHHHHHHHcC-----CCeEE
Q 035603 228 RGYLLFGPPGTGKSTMIAAMANCLN-----YDVYD 257 (431)
Q Consensus 228 rg~LL~GPPGtGKTsla~aiA~~l~-----~~i~~ 257 (431)
.-++|.||||+||||+++.||..++ ++++.
T Consensus 4 ~~I~i~G~~GsGKsT~~~~L~~~l~~~g~~~~~i~ 38 (192)
T 1kht_A 4 KVVVVTGVPGVGSTTSSQLAMDNLRKEGVNYKMVS 38 (192)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHHHTTTCCCEEEE
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHhcCcceEEEe
Confidence 4688999999999999999999988 66664
No 131
>3kw6_A 26S protease regulatory subunit 8; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Homo sapiens}
Probab=97.41 E-value=4.8e-05 Score=58.53 Aligned_cols=69 Identities=12% Similarity=-0.087 Sum_probs=46.3
Q ss_pred CCCCHHHHHHHHHHhhchhcchhHHHHHhHhcc-CCCCHHHHHHHhcccC----CCCCHHHHHHHHHHHHHHHH
Q 035603 334 PYCCFEAFKVLAKNYLEIESHELFHEIGSLLGE-TDITPADVAENLMPKS----DEDDAGTCLKNLIEALKAAK 402 (431)
Q Consensus 334 ~~p~~~~r~~i~~~~l~~~~~~~~~~i~~l~~~-~~~s~adI~~~l~~~~----~~~~~~~~l~~l~~~l~~~~ 402 (431)
|+|+.++|++|++.++.........++..++.. .|||+|||..+|..+. ..+......++|..++++..
T Consensus 1 plPd~~~R~~Il~~~l~~~~~~~~~dl~~la~~t~G~SGADi~~l~~eA~~~a~~~~~~~i~~~d~~~Al~~v~ 74 (78)
T 3kw6_A 1 PPPNEEARLDILKIHSRKMNLTRGINLRKIAELMPGASGAEVKGVCTEAGMYALRERRVHVTQEDFEMAVAKVM 74 (78)
T ss_dssp CCCCHHHHHHHHHHHHTTSEECTTCCHHHHHHTCTTCCHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHHHH
T ss_pred CcCCHHHHHHHHHHHhcCCCCCCccCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Confidence 689999999999999976543323346666664 4999999998876411 11222345566777766554
No 132
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=97.40 E-value=8.7e-05 Score=66.12 Aligned_cols=37 Identities=32% Similarity=0.332 Sum_probs=30.0
Q ss_pred CCCCceeEEeCCCCCcHHHHHHHHHHHcCCCeEEecc
Q 035603 224 KAWKRGYLLFGPPGTGKSTMIAAMANCLNYDVYDLEL 260 (431)
Q Consensus 224 ~~~~rg~LL~GPPGtGKTsla~aiA~~l~~~i~~l~~ 260 (431)
++.+.-+.|.||||+||||++++||+.++...+.++.
T Consensus 6 i~~g~~i~l~G~~GsGKSTl~~~La~~~~~g~i~i~~ 42 (191)
T 1zp6_A 6 DLGGNILLLSGHPGSGKSTIAEALANLPGVPKVHFHS 42 (191)
T ss_dssp CCTTEEEEEEECTTSCHHHHHHHHHTCSSSCEEEECT
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHhccCCCeEEEcc
Confidence 4455678999999999999999999987776655553
No 133
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=97.38 E-value=9.3e-05 Score=67.45 Aligned_cols=30 Identities=23% Similarity=0.351 Sum_probs=27.2
Q ss_pred eEEeCCCCCcHHHHHHHHHHHcCCCeEEec
Q 035603 230 YLLFGPPGTGKSTMIAAMANCLNYDVYDLE 259 (431)
Q Consensus 230 ~LL~GPPGtGKTsla~aiA~~l~~~i~~l~ 259 (431)
++|.||||+||||+++.+|..+|+.++..+
T Consensus 3 I~l~G~~GsGKsT~a~~L~~~~~~~~i~~d 32 (216)
T 3fb4_A 3 IVLMGLPGAGKGTQAEQIIEKYEIPHISTG 32 (216)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHCCCEEEHH
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCcEeeHH
Confidence 789999999999999999999998887653
No 134
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=97.37 E-value=9.6e-05 Score=67.77 Aligned_cols=31 Identities=26% Similarity=0.447 Sum_probs=28.0
Q ss_pred ceeEEeCCCCCcHHHHHHHHHHHcCCCeEEe
Q 035603 228 RGYLLFGPPGTGKSTMIAAMANCLNYDVYDL 258 (431)
Q Consensus 228 rg~LL~GPPGtGKTsla~aiA~~l~~~i~~l 258 (431)
.-++|.||||+||||+++.||..+++.++..
T Consensus 5 ~~I~l~G~~GsGKsT~a~~La~~l~~~~i~~ 35 (220)
T 1aky_A 5 IRMVLIGPPGAGKGTQAPNLQERFHAAHLAT 35 (220)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHCCEEEEH
T ss_pred cEEEEECCCCCCHHHHHHHHHHHcCceEEeh
Confidence 4688999999999999999999999887765
No 135
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=97.37 E-value=7.8e-05 Score=68.42 Aligned_cols=31 Identities=23% Similarity=0.398 Sum_probs=28.2
Q ss_pred ceeEEeCCCCCcHHHHHHHHHHHcCCCeEEe
Q 035603 228 RGYLLFGPPGTGKSTMIAAMANCLNYDVYDL 258 (431)
Q Consensus 228 rg~LL~GPPGtGKTsla~aiA~~l~~~i~~l 258 (431)
.-++|.||||+||||+++.||..++++++..
T Consensus 6 ~~I~l~G~~GsGKsT~a~~La~~l~~~~i~~ 36 (217)
T 3be4_A 6 HNLILIGAPGSGKGTQCEFIKKEYGLAHLST 36 (217)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHHCCEEEEH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhCceEEeh
Confidence 4588999999999999999999999888876
No 136
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=97.36 E-value=0.00015 Score=68.37 Aligned_cols=39 Identities=21% Similarity=0.189 Sum_probs=30.9
Q ss_pred CCCceeEEeCCCCCcHHHHHHHHHHHcCCCeEEecccCc
Q 035603 225 AWKRGYLLFGPPGTGKSTMIAAMANCLNYDVYDLELTSV 263 (431)
Q Consensus 225 ~~~rg~LL~GPPGtGKTsla~aiA~~l~~~i~~l~~~~~ 263 (431)
..+.-++|.||||+||||+++.|+..++...+.++...+
T Consensus 30 ~~~~~i~l~G~~GsGKSTla~~L~~~l~~~~~~~~~D~~ 68 (253)
T 2p5t_B 30 KQPIAILLGGQSGAGKTTIHRIKQKEFQGNIVIIDGDSF 68 (253)
T ss_dssp SSCEEEEEESCGGGTTHHHHHHHHHHTTTCCEEECGGGG
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHhcCCCcEEEecHHH
Confidence 335668999999999999999999999866565555443
No 137
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=97.35 E-value=0.00012 Score=65.98 Aligned_cols=32 Identities=19% Similarity=0.332 Sum_probs=28.6
Q ss_pred ceeEEeCCCCCcHHHHHHHHHHHcCCCeEEec
Q 035603 228 RGYLLFGPPGTGKSTMIAAMANCLNYDVYDLE 259 (431)
Q Consensus 228 rg~LL~GPPGtGKTsla~aiA~~l~~~i~~l~ 259 (431)
+-++|.|||||||||+++.+|..+|+.+++.+
T Consensus 16 ~~I~l~G~~GsGKsT~~~~L~~~~g~~~i~~d 47 (203)
T 1ukz_A 16 SVIFVLGGPGAGKGTQCEKLVKDYSFVHLSAG 47 (203)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHSSCEEEEHH
T ss_pred cEEEEECCCCCCHHHHHHHHHHHcCceEEeHH
Confidence 45889999999999999999999998887764
No 138
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=97.34 E-value=0.00014 Score=64.04 Aligned_cols=33 Identities=30% Similarity=0.489 Sum_probs=28.0
Q ss_pred CceeEEeCCCCCcHHHHHHHHHHHcCCCeEEec
Q 035603 227 KRGYLLFGPPGTGKSTMIAAMANCLNYDVYDLE 259 (431)
Q Consensus 227 ~rg~LL~GPPGtGKTsla~aiA~~l~~~i~~l~ 259 (431)
+.-++|.||||+||||+++.++..+|..+++.+
T Consensus 8 g~~i~l~G~~GsGKSTl~~~l~~~~g~~~i~~d 40 (175)
T 1knq_A 8 HHIYVLMGVSGSGKSAVASEVAHQLHAAFLDGD 40 (175)
T ss_dssp SEEEEEECSTTSCHHHHHHHHHHHHTCEEEEGG
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHhhCcEEEeCc
Confidence 345889999999999999999999987766543
No 139
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=97.33 E-value=9.8e-05 Score=65.22 Aligned_cols=30 Identities=20% Similarity=0.210 Sum_probs=23.3
Q ss_pred CceeEEeCCCCCcHHHHHHHHHHHcCCCeE
Q 035603 227 KRGYLLFGPPGTGKSTMIAAMANCLNYDVY 256 (431)
Q Consensus 227 ~rg~LL~GPPGtGKTsla~aiA~~l~~~i~ 256 (431)
+.-++|.|+||+||||+++.+|..++.+++
T Consensus 5 ~~~I~l~G~~GsGKST~a~~La~~l~~~~i 34 (183)
T 2vli_A 5 SPIIWINGPFGVGKTHTAHTLHERLPGSFV 34 (183)
T ss_dssp CCEEEEECCC----CHHHHHHHHHSTTCEE
T ss_pred CeEEEEECCCCCCHHHHHHHHHHhcCCCEE
Confidence 346889999999999999999999999877
No 140
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=97.32 E-value=8.4e-05 Score=68.24 Aligned_cols=32 Identities=16% Similarity=0.215 Sum_probs=27.8
Q ss_pred CceeEEeCCCCCcHHHHHHHHHHHcCCCeEEe
Q 035603 227 KRGYLLFGPPGTGKSTMIAAMANCLNYDVYDL 258 (431)
Q Consensus 227 ~rg~LL~GPPGtGKTsla~aiA~~l~~~i~~l 258 (431)
+.-++|.||||+||||+++.||..+++.++++
T Consensus 5 ~~~I~l~G~~GsGKsT~~~~La~~l~~~~i~~ 36 (222)
T 1zak_A 5 PLKVMISGAPASGKGTQCELIKTKYQLAHISA 36 (222)
T ss_dssp SCCEEEEESTTSSHHHHHHHHHHHHCCEECCH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCCceecH
Confidence 45689999999999999999999999766554
No 141
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=97.31 E-value=0.00012 Score=67.82 Aligned_cols=31 Identities=29% Similarity=0.419 Sum_probs=28.0
Q ss_pred ceeEEeCCCCCcHHHHHHHHHHHcCCCeEEe
Q 035603 228 RGYLLFGPPGTGKSTMIAAMANCLNYDVYDL 258 (431)
Q Consensus 228 rg~LL~GPPGtGKTsla~aiA~~l~~~i~~l 258 (431)
.-++|.|||||||||+++.||..+++.++..
T Consensus 17 ~~I~l~G~~GsGKsT~a~~La~~l~~~~i~~ 47 (233)
T 1ak2_A 17 VRAVLLGPPGAGKGTQAPKLAKNFCVCHLAT 47 (233)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHTCEEEEH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhCCceecH
Confidence 4689999999999999999999999887765
No 142
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=97.25 E-value=0.00014 Score=66.44 Aligned_cols=29 Identities=21% Similarity=0.280 Sum_probs=26.9
Q ss_pred eEEeCCCCCcHHHHHHHHHHHcCCCeEEe
Q 035603 230 YLLFGPPGTGKSTMIAAMANCLNYDVYDL 258 (431)
Q Consensus 230 ~LL~GPPGtGKTsla~aiA~~l~~~i~~l 258 (431)
++|.||||+||||+++.||..+|+.++..
T Consensus 3 I~l~G~~GsGKsT~a~~L~~~~g~~~i~~ 31 (214)
T 1e4v_A 3 IILLGAPVAGKGTQAQFIMEKYGIPQIST 31 (214)
T ss_dssp EEEEESTTSSHHHHHHHHHHHHCCCEEEH
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCeEEeH
Confidence 78999999999999999999999888775
No 143
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=97.24 E-value=0.0002 Score=64.68 Aligned_cols=31 Identities=23% Similarity=0.448 Sum_probs=26.8
Q ss_pred CceeEEeCCCCCcHHHHHHHHHHHcCCCeEE
Q 035603 227 KRGYLLFGPPGTGKSTMIAAMANCLNYDVYD 257 (431)
Q Consensus 227 ~rg~LL~GPPGtGKTsla~aiA~~l~~~i~~ 257 (431)
+.-+.|.||||+||||++++||+.+|..+++
T Consensus 29 g~~i~l~G~~GsGKSTl~~~L~~~~g~~~i~ 59 (200)
T 4eun_A 29 TRHVVVMGVSGSGKTTIAHGVADETGLEFAE 59 (200)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHHCCEEEE
T ss_pred CcEEEEECCCCCCHHHHHHHHHHhhCCeEEc
Confidence 4568899999999999999999999876554
No 144
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=97.24 E-value=0.00018 Score=66.51 Aligned_cols=32 Identities=22% Similarity=0.451 Sum_probs=27.8
Q ss_pred CCCceeEEeCCCCCcHHHHHHHHHHHcCCCeE
Q 035603 225 AWKRGYLLFGPPGTGKSTMIAAMANCLNYDVY 256 (431)
Q Consensus 225 ~~~rg~LL~GPPGtGKTsla~aiA~~l~~~i~ 256 (431)
..++-++|.||||+||+|.|+.||..+|+..+
T Consensus 27 ~k~kiI~llGpPGsGKgTqa~~L~~~~g~~hI 58 (217)
T 3umf_A 27 AKAKVIFVLGGPGSGKGTQCEKLVQKFHFNHL 58 (217)
T ss_dssp TSCEEEEEECCTTCCHHHHHHHHHHHHCCEEE
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHHHHCCceE
Confidence 44577889999999999999999999987654
No 145
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=97.23 E-value=0.00024 Score=62.85 Aligned_cols=34 Identities=29% Similarity=0.385 Sum_probs=29.5
Q ss_pred CceeEEeCCCCCcHHHHHHHHHHHc---CCCeEEecc
Q 035603 227 KRGYLLFGPPGTGKSTMIAAMANCL---NYDVYDLEL 260 (431)
Q Consensus 227 ~rg~LL~GPPGtGKTsla~aiA~~l---~~~i~~l~~ 260 (431)
+.-+.|.|++|+||||+++.++..+ |++++.++.
T Consensus 5 g~~i~l~G~~GsGKST~~~~L~~~l~~~g~~~i~~d~ 41 (179)
T 2pez_A 5 GCTVWLTGLSGAGKTTVSMALEEYLVCHGIPCYTLDG 41 (179)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHhhCCCcEEEECC
Confidence 3457899999999999999999998 999887763
No 146
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=97.22 E-value=0.00023 Score=63.25 Aligned_cols=31 Identities=26% Similarity=0.245 Sum_probs=28.1
Q ss_pred eEEeCCCCCcHHHHHHHHHHHc---CCCeEEecc
Q 035603 230 YLLFGPPGTGKSTMIAAMANCL---NYDVYDLEL 260 (431)
Q Consensus 230 ~LL~GPPGtGKTsla~aiA~~l---~~~i~~l~~ 260 (431)
+.|.|+||+||||+++.+|..+ |++++..+.
T Consensus 3 I~l~G~~GsGKsT~~~~L~~~l~~~g~~~i~~d~ 36 (195)
T 2pbr_A 3 IAFEGIDGSGKTTQAKKLYEYLKQKGYFVSLYRE 36 (195)
T ss_dssp EEEECSTTSCHHHHHHHHHHHHHHTTCCEEEEES
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEeC
Confidence 6899999999999999999988 899888764
No 147
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=97.21 E-value=0.00018 Score=67.32 Aligned_cols=34 Identities=24% Similarity=0.390 Sum_probs=29.5
Q ss_pred CCceeEEeCCCCCcHHHHHHHHHHHcCCCeEEec
Q 035603 226 WKRGYLLFGPPGTGKSTMIAAMANCLNYDVYDLE 259 (431)
Q Consensus 226 ~~rg~LL~GPPGtGKTsla~aiA~~l~~~i~~l~ 259 (431)
.+.-++|.||||+||||+++.|+..+++.++..+
T Consensus 28 ~~~~I~l~G~~GsGKsT~a~~L~~~~g~~~is~~ 61 (243)
T 3tlx_A 28 PDGRYIFLGAPGSGKGTQSLNLKKSHCYCHLSTG 61 (243)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHCCEEEEHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHhCCeEEecH
Confidence 3456899999999999999999999998877653
No 148
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=97.17 E-value=0.00058 Score=61.84 Aligned_cols=50 Identities=18% Similarity=0.117 Sum_probs=37.1
Q ss_pred CCCCCceeEEeCCCCCcHHHHHHHHHHHcCCCeEEecccCcCChHHHHHH
Q 035603 223 GKAWKRGYLLFGPPGTGKSTMIAAMANCLNYDVYDLELTSVENNNELRSL 272 (431)
Q Consensus 223 g~~~~rg~LL~GPPGtGKTsla~aiA~~l~~~i~~l~~~~~~~~~~l~~l 272 (431)
|++.+.-++|+||||+|||+|+..+|...+..++.++...-.....+..+
T Consensus 16 gi~~G~~~~i~G~~GsGKTtl~~~l~~~~~~~v~~i~~~~~~~~~~~~~~ 65 (220)
T 2cvh_A 16 GFAPGVLTQVYGPYASGKTTLALQTGLLSGKKVAYVDTEGGFSPERLVQM 65 (220)
T ss_dssp SBCTTSEEEEECSTTSSHHHHHHHHHHHHCSEEEEEESSCCCCHHHHHHH
T ss_pred CCcCCEEEEEECCCCCCHHHHHHHHHHHcCCcEEEEECCCCCCHHHHHHH
Confidence 57777789999999999999999999866667777766542234444443
No 149
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=97.17 E-value=0.00023 Score=69.72 Aligned_cols=34 Identities=24% Similarity=0.525 Sum_probs=30.6
Q ss_pred CceeEEeCCCCCcHHHHHHHHHHHcCCCeEEecc
Q 035603 227 KRGYLLFGPPGTGKSTMIAAMANCLNYDVYDLEL 260 (431)
Q Consensus 227 ~rg~LL~GPPGtGKTsla~aiA~~l~~~i~~l~~ 260 (431)
++.++|.||||||||+++.++|..++..++.+|.
T Consensus 5 ~~~i~i~GptGsGKTtla~~La~~l~~~iis~Ds 38 (323)
T 3crm_A 5 PPAIFLMGPTAAGKTDLAMALADALPCELISVDS 38 (323)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHHSCEEEEEECT
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHcCCcEEeccc
Confidence 3578999999999999999999999998888764
No 150
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=97.16 E-value=0.0002 Score=66.06 Aligned_cols=29 Identities=28% Similarity=0.453 Sum_probs=26.4
Q ss_pred eEEeCCCCCcHHHHHHHHHHHcCCCeEEe
Q 035603 230 YLLFGPPGTGKSTMIAAMANCLNYDVYDL 258 (431)
Q Consensus 230 ~LL~GPPGtGKTsla~aiA~~l~~~i~~l 258 (431)
++|.||||+||||+++.||..+++.++..
T Consensus 3 I~l~G~~GsGKsT~a~~La~~lg~~~i~~ 31 (223)
T 2xb4_A 3 ILIFGPNGSGKGTQGNLVKDKYSLAHIES 31 (223)
T ss_dssp EEEECCTTSCHHHHHHHHHHHHTCEEEEH
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCeEEch
Confidence 78999999999999999999999877665
No 151
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=97.15 E-value=7.1e-05 Score=74.19 Aligned_cols=50 Identities=24% Similarity=0.363 Sum_probs=36.8
Q ss_pred hhhHHHHHHHHHHHHhCHHHHHHhCCCCCceeEEeCCCCCcHHHHHHHHHHHcCCCeEE
Q 035603 199 SKKKEAIKKDLIKFTEGKEYYAKIGKAWKRGYLLFGPPGTGKSTMIAAMANCLNYDVYD 257 (431)
Q Consensus 199 ~~~k~~i~~~l~~~~~~~~~~~~~g~~~~rg~LL~GPPGtGKTsla~aiA~~l~~~i~~ 257 (431)
+.+.+.+.+.+...+.. | ....++|.||||+|||+++++||+.++++++.
T Consensus 5 ~~L~~~il~~l~~~i~~-------g--~~~~i~l~G~~G~GKTTl~~~la~~l~~~f~~ 54 (359)
T 2ga8_A 5 HKLADDVLQLLDNRIED-------N--YRVCVILVGSPGSGKSTIAEELCQIINEKYHT 54 (359)
T ss_dssp HHHHHHHHHHHHHTTTT-------C--SCEEEEEECCTTSSHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcc-------C--CeeEEEEECCCCCcHHHHHHHHHHHhCCCeee
Confidence 45666666655544432 1 12468999999999999999999999988854
No 152
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=97.13 E-value=0.00021 Score=64.48 Aligned_cols=31 Identities=32% Similarity=0.304 Sum_probs=27.5
Q ss_pred eeEEeCCCCCcHHHHHHHHHHHcCCCeEEecc
Q 035603 229 GYLLFGPPGTGKSTMIAAMANCLNYDVYDLEL 260 (431)
Q Consensus 229 g~LL~GPPGtGKTsla~aiA~~l~~~i~~l~~ 260 (431)
-+.|.|||||||||+++.||+ +|+++++.+.
T Consensus 3 ~i~i~G~~GsGKSTl~~~L~~-~g~~~i~~d~ 33 (204)
T 2if2_A 3 RIGLTGNIGCGKSTVAQMFRE-LGAYVLDADK 33 (204)
T ss_dssp EEEEEECTTSSHHHHHHHHHH-TTCEEEEHHH
T ss_pred EEEEECCCCcCHHHHHHHHHH-CCCEEEEccH
Confidence 478999999999999999999 9988887653
No 153
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=97.12 E-value=0.00027 Score=64.78 Aligned_cols=28 Identities=29% Similarity=0.548 Sum_probs=25.0
Q ss_pred eEEeCCCCCcHHHHHHHHHHHcCCCeEE
Q 035603 230 YLLFGPPGTGKSTMIAAMANCLNYDVYD 257 (431)
Q Consensus 230 ~LL~GPPGtGKTsla~aiA~~l~~~i~~ 257 (431)
++|.||||+||+|.|+.||..+|++.+.
T Consensus 3 Iil~GpPGsGKgTqa~~La~~~g~~~is 30 (206)
T 3sr0_A 3 LVFLGPPGAGKGTQAKRLAKEKGFVHIS 30 (206)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHCCEEEE
T ss_pred EEEECCCCCCHHHHHHHHHHHHCCeEEc
Confidence 6889999999999999999999876553
No 154
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=97.10 E-value=0.00055 Score=61.60 Aligned_cols=45 Identities=18% Similarity=0.295 Sum_probs=32.1
Q ss_pred ceeEEeCCCCCcHHHHHHHHHHHcCCC--eEEecccCcCChHHHHHHHHH
Q 035603 228 RGYLLFGPPGTGKSTMIAAMANCLNYD--VYDLELTSVENNNELRSLLVD 275 (431)
Q Consensus 228 rg~LL~GPPGtGKTsla~aiA~~l~~~--i~~l~~~~~~~~~~l~~l~~~ 275 (431)
.-++|.||||+||||+++.||..++.. ++..... ....+++++..
T Consensus 5 ~~I~i~G~~GsGKsT~~~~L~~~l~~~g~~~~~~~~---~~~~i~~~~~~ 51 (213)
T 2plr_A 5 VLIAFEGIDGSGKSSQATLLKDWIELKRDVYLTEWN---SSDWIHDIIKE 51 (213)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHTTTSCEEEEETT---CCCHHHHHHHH
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHHhhcCCEEEecCC---cHHHHHHHHhc
Confidence 457899999999999999999998873 5443322 22346666544
No 155
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=97.09 E-value=0.00035 Score=65.20 Aligned_cols=31 Identities=26% Similarity=0.506 Sum_probs=27.1
Q ss_pred CceeEEeCCCCCcHHHHHHHHHHHcCCCeEE
Q 035603 227 KRGYLLFGPPGTGKSTMIAAMANCLNYDVYD 257 (431)
Q Consensus 227 ~rg~LL~GPPGtGKTsla~aiA~~l~~~i~~ 257 (431)
+.-+.|.||||+||||++++||..+|+..+.
T Consensus 27 ~~~i~l~G~~GsGKSTl~k~La~~lg~~~~~ 57 (246)
T 2bbw_A 27 LLRAVILGPPGSGKGTVCQRIAQNFGLQHLS 57 (246)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHHCCCCEE
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHhCCeEec
Confidence 4578999999999999999999999876554
No 156
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=97.08 E-value=0.00017 Score=63.98 Aligned_cols=24 Identities=38% Similarity=0.559 Sum_probs=22.2
Q ss_pred eeEEeCCCCCcHHHHHHHHHHHcC
Q 035603 229 GYLLFGPPGTGKSTMIAAMANCLN 252 (431)
Q Consensus 229 g~LL~GPPGtGKTsla~aiA~~l~ 252 (431)
-++|.||||+||||+++.||..++
T Consensus 3 ~I~i~G~~GsGKsT~~~~L~~~l~ 26 (194)
T 1nks_A 3 IGIVTGIPGVGKSTVLAKVKEILD 26 (194)
T ss_dssp EEEEEECTTSCHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH
Confidence 478999999999999999999886
No 157
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=97.08 E-value=0.0003 Score=63.25 Aligned_cols=31 Identities=23% Similarity=0.264 Sum_probs=28.4
Q ss_pred eeEEeCCCCCcHHHHHHHHHHHcCCCeEEec
Q 035603 229 GYLLFGPPGTGKSTMIAAMANCLNYDVYDLE 259 (431)
Q Consensus 229 g~LL~GPPGtGKTsla~aiA~~l~~~i~~l~ 259 (431)
-+.|.||||+|||++++.+|..+|+++++.+
T Consensus 4 ~i~i~G~~GsGKst~~~~la~~lg~~~~d~d 34 (208)
T 3ake_A 4 IVTIDGPSASGKSSVARRVAAALGVPYLSSG 34 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHTCCEEEHH
T ss_pred EEEEECCCCCCHHHHHHHHHHhcCCceeccc
Confidence 5789999999999999999999999988764
No 158
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=97.08 E-value=0.00033 Score=62.85 Aligned_cols=34 Identities=15% Similarity=0.178 Sum_probs=29.1
Q ss_pred ceeEEeCCCCCcHHHHHHHHHHHc-CCCeEEeccc
Q 035603 228 RGYLLFGPPGTGKSTMIAAMANCL-NYDVYDLELT 261 (431)
Q Consensus 228 rg~LL~GPPGtGKTsla~aiA~~l-~~~i~~l~~~ 261 (431)
.-+.|.||||+||||+++.+|..+ |++++.++..
T Consensus 5 ~~I~l~G~~GsGKsT~~~~L~~~l~g~~~~~~~~~ 39 (204)
T 2v54_A 5 ALIVFEGLDKSGKTTQCMNIMESIPANTIKYLNFP 39 (204)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHTSCGGGEEEEESS
T ss_pred cEEEEEcCCCCCHHHHHHHHHHHHCCCceEEEecC
Confidence 458899999999999999999999 6888776543
No 159
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=97.08 E-value=0.00026 Score=63.97 Aligned_cols=30 Identities=27% Similarity=0.337 Sum_probs=26.6
Q ss_pred eeEEeCCCCCcHHHHHHHHHHHcCCCeEEec
Q 035603 229 GYLLFGPPGTGKSTMIAAMANCLNYDVYDLE 259 (431)
Q Consensus 229 g~LL~GPPGtGKTsla~aiA~~l~~~i~~l~ 259 (431)
-+.|.|||||||||+++.+|+ +|+++++.+
T Consensus 4 ~i~l~G~~GsGKST~~~~La~-lg~~~id~d 33 (206)
T 1jjv_A 4 IVGLTGGIGSGKTTIANLFTD-LGVPLVDAD 33 (206)
T ss_dssp EEEEECSTTSCHHHHHHHHHT-TTCCEEEHH
T ss_pred EEEEECCCCCCHHHHHHHHHH-CCCcccchH
Confidence 477999999999999999998 898888754
No 160
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=97.07 E-value=0.00029 Score=66.53 Aligned_cols=34 Identities=35% Similarity=0.555 Sum_probs=30.4
Q ss_pred CceeEEeCCCCCcHHHHHHHHHHHcCCCeEEecc
Q 035603 227 KRGYLLFGPPGTGKSTMIAAMANCLNYDVYDLEL 260 (431)
Q Consensus 227 ~rg~LL~GPPGtGKTsla~aiA~~l~~~i~~l~~ 260 (431)
...+.|.||||+||||+++.||..+|+++++.+.
T Consensus 48 g~~i~l~G~~GsGKSTl~~~La~~lg~~~~d~d~ 81 (250)
T 3nwj_A 48 GRSMYLVGMMGSGKTTVGKIMARSLGYTFFDCDT 81 (250)
T ss_dssp TCCEEEECSTTSCHHHHHHHHHHHHTCEEEEHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhcCCcEEeCcH
Confidence 3579999999999999999999999999888653
No 161
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=97.06 E-value=0.00031 Score=62.88 Aligned_cols=29 Identities=34% Similarity=0.709 Sum_probs=25.6
Q ss_pred eeEEeCCCCCcHHHHHHHHHHHcCCCeEE
Q 035603 229 GYLLFGPPGTGKSTMIAAMANCLNYDVYD 257 (431)
Q Consensus 229 g~LL~GPPGtGKTsla~aiA~~l~~~i~~ 257 (431)
-+.|.|||||||||+++.||..++..++.
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~~l~~~~~~ 30 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISKKLGYEIFK 30 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHCCEEEC
T ss_pred EEEEECCCccCHHHHHHHHHHhcCCcEEc
Confidence 37899999999999999999999986653
No 162
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=97.05 E-value=0.00034 Score=64.03 Aligned_cols=31 Identities=35% Similarity=0.560 Sum_probs=27.5
Q ss_pred ceeEEeCCCCCcHHHHHHHHHHHcCCCeEEe
Q 035603 228 RGYLLFGPPGTGKSTMIAAMANCLNYDVYDL 258 (431)
Q Consensus 228 rg~LL~GPPGtGKTsla~aiA~~l~~~i~~l 258 (431)
.-+.|.|||||||||+++.||+.+|+++++.
T Consensus 6 ~~i~i~G~~GsGKSTl~~~L~~~~g~~~~d~ 36 (227)
T 1cke_A 6 PVITIDGPSGAGKGTLCKAMAEALQWHLLDS 36 (227)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHTCEEEEH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhCCCcccC
Confidence 3588999999999999999999999877764
No 163
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=97.04 E-value=0.00041 Score=61.80 Aligned_cols=31 Identities=32% Similarity=0.281 Sum_probs=26.8
Q ss_pred eEEeCCCCCcHHHHHHHHHHHc---CCCeEEecc
Q 035603 230 YLLFGPPGTGKSTMIAAMANCL---NYDVYDLEL 260 (431)
Q Consensus 230 ~LL~GPPGtGKTsla~aiA~~l---~~~i~~l~~ 260 (431)
+.|.|||||||||+++.++..+ |++++....
T Consensus 3 I~l~G~~GsGKsT~~~~L~~~l~~~g~~v~~~~~ 36 (197)
T 2z0h_A 3 ITFEGIDGSGKSTQIQLLAQYLEKRGKKVILKRE 36 (197)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHHHCCC-EEEEES
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHCCCeEEEeeC
Confidence 6799999999999999999999 999876644
No 164
>1z6t_A APAF-1, apoptotic protease activating factor 1; caspase activation, ADP, nucleotide binding, CARD, apoptosis; HET: ADP; 2.21A {Homo sapiens}
Probab=97.02 E-value=0.01 Score=62.27 Aligned_cols=64 Identities=20% Similarity=0.121 Sum_probs=40.9
Q ss_pred CCCccccccChhhHHHHHHHHHHHHhCHHHHHHhCCCCCceeEEeCCCCCcHHHHHHHHHHH-------cCCCeEEeccc
Q 035603 189 PATFDTLAMASKKKEAIKKDLIKFTEGKEYYAKIGKAWKRGYLLFGPPGTGKSTMIAAMANC-------LNYDVYDLELT 261 (431)
Q Consensus 189 p~~f~~l~g~~~~k~~i~~~l~~~~~~~~~~~~~g~~~~rg~LL~GPPGtGKTsla~aiA~~-------l~~~i~~l~~~ 261 (431)
|.....++|-+...+.|.+.+. .. ....+-++++||+|+|||+||..+++. +...++.++.+
T Consensus 120 P~~~~~~vGR~~~l~~L~~~L~----~~-------~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~v~wv~~~ 188 (591)
T 1z6t_A 120 PQRPVVFVTRKKLVNAIQQKLS----KL-------KGEPGWVTIHGMAGCGKSVLAAEAVRDHSLLEGCFPGGVHWVSVG 188 (591)
T ss_dssp CCCCSSCCCCHHHHHHHHHHHT----TS-------TTSCEEEEEECCTTSSHHHHHHHHHCCHHHHHHHCTTCEEEEEEE
T ss_pred CCCCCeecccHHHHHHHHHHHh----cc-------cCCCceEEEEcCCCCCHHHHHHHHHhchhHHHhhCCCceEEEECC
Confidence 3334567887777766655432 10 123467899999999999999998642 22245666655
Q ss_pred Cc
Q 035603 262 SV 263 (431)
Q Consensus 262 ~~ 263 (431)
..
T Consensus 189 ~~ 190 (591)
T 1z6t_A 189 KQ 190 (591)
T ss_dssp SC
T ss_pred CC
Confidence 43
No 165
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=97.01 E-value=0.00081 Score=61.87 Aligned_cols=50 Identities=18% Similarity=0.159 Sum_probs=35.1
Q ss_pred CCCCCceeEEeCCCCCcHHHHHHHHHHH--c-------CCCeEEecccCcCChHHHHHH
Q 035603 223 GKAWKRGYLLFGPPGTGKSTMIAAMANC--L-------NYDVYDLELTSVENNNELRSL 272 (431)
Q Consensus 223 g~~~~rg~LL~GPPGtGKTsla~aiA~~--l-------~~~i~~l~~~~~~~~~~l~~l 272 (431)
|++...-++|+||||+|||+|+..+|.. + +..++.++.........+...
T Consensus 20 gi~~G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~g~~~~~~~~i~~~~~~~~~~~~~~ 78 (243)
T 1n0w_A 20 GIETGSITEMFGEFRTGKTQICHTLAVTCQLPIDRGGGEGKAMYIDTEGTFRPERLLAV 78 (243)
T ss_dssp SEETTSEEEEECCTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSSCCCHHHHHHH
T ss_pred CCcCCeEEEEECCCCCcHHHHHHHHHHHHhCchhcCCCCCeEEEEECCCCcCHHHHHHH
Confidence 5677778999999999999999999985 3 345666665543233334433
No 166
>2krk_A 26S protease regulatory subunit 8; structural genomics, northeast structural genomics consortium (NESG), target HR3102A, PSI-2; NMR {Homo sapiens}
Probab=97.01 E-value=0.00021 Score=56.21 Aligned_cols=70 Identities=10% Similarity=-0.116 Sum_probs=45.0
Q ss_pred EcCCCCHHHHHHHHHHhhchhcchhHHHHHhHhccC-CCCHHHHHHHhcccC----CCCCHHHHHHHHHHHHHHH
Q 035603 332 EMPYCCFEAFKVLAKNYLEIESHELFHEIGSLLGET-DITPADVAENLMPKS----DEDDAGTCLKNLIEALKAA 401 (431)
Q Consensus 332 ~~~~p~~~~r~~i~~~~l~~~~~~~~~~i~~l~~~~-~~s~adI~~~l~~~~----~~~~~~~~l~~l~~~l~~~ 401 (431)
+-++|+.++|++|++.++.........++..+++.+ |||+|||.++|..+. ......+..++|..++++.
T Consensus 7 ~~~~Pd~~~R~~IL~~~l~~~~l~~dvdl~~LA~~T~G~SGADL~~l~~eAa~~alr~~~~~I~~~df~~Al~~v 81 (86)
T 2krk_A 7 HHSHPNEEARLDILKIHSRKMNLTRGINLRKIAELMPGASGAEVKGVCTEAGMYALRERRVHVTQEDFEMAVAKV 81 (86)
T ss_dssp CCCCCCHHHHHHHHHHHTTTSEECTTCCCHHHHHTCSSCCHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHHH
T ss_pred CCCCcCHHHHHHHHHHHHcCCCCCcccCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Confidence 347899999999999999754433233456666644 999999998876421 1111223445566665544
No 167
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=97.00 E-value=0.00049 Score=65.00 Aligned_cols=32 Identities=41% Similarity=0.445 Sum_probs=27.4
Q ss_pred ceeEEeCCCCCcHHHHHHHHHHH---cCCCeEEec
Q 035603 228 RGYLLFGPPGTGKSTMIAAMANC---LNYDVYDLE 259 (431)
Q Consensus 228 rg~LL~GPPGtGKTsla~aiA~~---l~~~i~~l~ 259 (431)
.-++|.|+||+||||+++.+|.. +|+.++.++
T Consensus 5 ~lIvl~G~pGSGKSTla~~La~~L~~~g~~~i~~~ 39 (260)
T 3a4m_A 5 MLIILTGLPGVGKSTFSKNLAKILSKNNIDVIVLG 39 (260)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEC
T ss_pred EEEEEEcCCCCCHHHHHHHHHHHHHhCCCEEEEEC
Confidence 45889999999999999999998 788877444
No 168
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=97.00 E-value=0.00036 Score=63.18 Aligned_cols=33 Identities=27% Similarity=0.254 Sum_probs=28.9
Q ss_pred ceeEEeCCCCCcHHHHHHHHHHHcCCCeEEecc
Q 035603 228 RGYLLFGPPGTGKSTMIAAMANCLNYDVYDLEL 260 (431)
Q Consensus 228 rg~LL~GPPGtGKTsla~aiA~~l~~~i~~l~~ 260 (431)
.-+.|.|++||||||+++.+|..+|+++++.|.
T Consensus 13 ~iIgltG~~GSGKSTva~~L~~~lg~~vid~D~ 45 (192)
T 2grj_A 13 MVIGVTGKIGTGKSTVCEILKNKYGAHVVNVDR 45 (192)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHHCCEEEEHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHhcCCEEEECcH
Confidence 346799999999999999999999999888653
No 169
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=96.96 E-value=0.00052 Score=64.13 Aligned_cols=32 Identities=31% Similarity=0.382 Sum_probs=28.3
Q ss_pred CceeEEeCCCCCcHHHHHHHHHHHcCCCeEEe
Q 035603 227 KRGYLLFGPPGTGKSTMIAAMANCLNYDVYDL 258 (431)
Q Consensus 227 ~rg~LL~GPPGtGKTsla~aiA~~l~~~i~~l 258 (431)
+.-+.|.||||+||||+++.||..+++.+++.
T Consensus 9 ~~~i~i~G~~GsGKsTla~~la~~lg~~~~d~ 40 (233)
T 3r20_A 9 SLVVAVDGPAGTGKSSVSRGLARALGARYLDT 40 (233)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHHTCEEEEH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCCCcccC
Confidence 34688999999999999999999999887764
No 170
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=96.95 E-value=0.00064 Score=80.47 Aligned_cols=39 Identities=18% Similarity=0.281 Sum_probs=30.8
Q ss_pred CCCCCceeEEeCCCCCcHHHHHHHHHHHc---CCCeEEeccc
Q 035603 223 GKAWKRGYLLFGPPGTGKSTMIAAMANCL---NYDVYDLELT 261 (431)
Q Consensus 223 g~~~~rg~LL~GPPGtGKTsla~aiA~~l---~~~i~~l~~~ 261 (431)
|++.+++++||||||||||+||.++|.+. |..+..++..
T Consensus 1423 Gi~~g~~vll~GppGtGKT~LA~ala~ea~~~G~~v~Fi~~e 1464 (2050)
T 3cmu_A 1423 GLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAE 1464 (2050)
T ss_dssp SEETTSEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEECTT
T ss_pred CccCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEEEcc
Confidence 47888999999999999999999998764 4445555444
No 171
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=96.94 E-value=0.0007 Score=61.06 Aligned_cols=34 Identities=29% Similarity=0.311 Sum_probs=26.6
Q ss_pred CCceeEEeCCCCCcHHHHHHHHHHHc---CCCeEEec
Q 035603 226 WKRGYLLFGPPGTGKSTMIAAMANCL---NYDVYDLE 259 (431)
Q Consensus 226 ~~rg~LL~GPPGtGKTsla~aiA~~l---~~~i~~l~ 259 (431)
.+.-+.|.||+||||||++++||..+ |...+.++
T Consensus 24 ~g~~i~l~G~sGsGKSTl~~~La~~l~~~G~~~~~~d 60 (200)
T 3uie_A 24 KGCVIWVTGLSGSGKSTLACALNQMLYQKGKLCYILD 60 (200)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhcCceEEEec
Confidence 34567899999999999999999998 54433443
No 172
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=96.92 E-value=0.0005 Score=61.53 Aligned_cols=32 Identities=34% Similarity=0.419 Sum_probs=28.2
Q ss_pred CceeEEeCCCCCcHHHHHHHHHHHcCCCeEEec
Q 035603 227 KRGYLLFGPPGTGKSTMIAAMANCLNYDVYDLE 259 (431)
Q Consensus 227 ~rg~LL~GPPGtGKTsla~aiA~~l~~~i~~l~ 259 (431)
+.-+.|.|||||||||+++.+|.. |+++++.+
T Consensus 8 ~~~I~i~G~~GsGKST~~~~La~~-g~~~id~d 39 (203)
T 1uf9_A 8 PIIIGITGNIGSGKSTVAALLRSW-GYPVLDLD 39 (203)
T ss_dssp CEEEEEEECTTSCHHHHHHHHHHT-TCCEEEHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHC-CCEEEccc
Confidence 346889999999999999999998 98888765
No 173
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=96.90 E-value=0.00027 Score=63.90 Aligned_cols=32 Identities=19% Similarity=0.209 Sum_probs=26.0
Q ss_pred CceeEEeCCCCCcHHHHHHHHHHHcCCCeEEe
Q 035603 227 KRGYLLFGPPGTGKSTMIAAMANCLNYDVYDL 258 (431)
Q Consensus 227 ~rg~LL~GPPGtGKTsla~aiA~~l~~~i~~l 258 (431)
+.-+.|.|+|||||||+++.+|..++...+.+
T Consensus 10 ~~~I~l~G~~GsGKST~~~~L~~~l~~~~~~~ 41 (212)
T 2wwf_A 10 GKFIVFEGLDRSGKSTQSKLLVEYLKNNNVEV 41 (212)
T ss_dssp SCEEEEEESTTSSHHHHHHHHHHHHHHTTCCE
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHHHHHcCCcE
Confidence 45688999999999999999999876554433
No 174
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=96.90 E-value=0.0012 Score=60.19 Aligned_cols=30 Identities=23% Similarity=0.330 Sum_probs=25.7
Q ss_pred CCCCCceeEEeCCCCCcHHHHHHHHHHHcC
Q 035603 223 GKAWKRGYLLFGPPGTGKSTMIAAMANCLN 252 (431)
Q Consensus 223 g~~~~rg~LL~GPPGtGKTsla~aiA~~l~ 252 (431)
|++...-+.|.||+|+|||+|++.||..+-
T Consensus 21 gi~~G~~~~l~G~nGsGKSTll~~l~g~~~ 50 (231)
T 4a74_A 21 GIETQAITEVFGEFGSGKTQLAHTLAVMVQ 50 (231)
T ss_dssp SEESSEEEEEEESTTSSHHHHHHHHHHHTT
T ss_pred CCCCCcEEEEECCCCCCHHHHHHHHHHHHh
Confidence 566667789999999999999999998543
No 175
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=96.88 E-value=0.00081 Score=66.76 Aligned_cols=42 Identities=17% Similarity=0.098 Sum_probs=33.2
Q ss_pred CCCCCceeEEeCCCCCcHHHHHHHHHHHc---CCCeEEecccCcC
Q 035603 223 GKAWKRGYLLFGPPGTGKSTMIAAMANCL---NYDVYDLELTSVE 264 (431)
Q Consensus 223 g~~~~rg~LL~GPPGtGKTsla~aiA~~l---~~~i~~l~~~~~~ 264 (431)
|++..+-++|+||||+|||+|+..+|..+ +..++.++.....
T Consensus 57 Gi~~G~i~~I~GppGsGKSTLal~la~~~~~~gg~VlyId~E~s~ 101 (356)
T 3hr8_A 57 GYPRGRIVEIFGQESSGKTTLALHAIAEAQKMGGVAAFIDAEHAL 101 (356)
T ss_dssp SEETTEEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSCCC
T ss_pred CccCCcEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEeccccc
Confidence 56767778999999999999999998764 5567677665543
No 176
>3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain, PIN-tower interface, coupling hydrolysis to DNA unwinding, ssDNA; 3.30A {Enterobacteria phage T4}
Probab=96.88 E-value=0.0012 Score=67.67 Aligned_cols=54 Identities=30% Similarity=0.401 Sum_probs=34.7
Q ss_pred eccCCCCccccccChhhHHHHHHHHHHHHhCHHHHHHhCCCCCceeEEeCCCCCcHHHHHHHHHHHc
Q 035603 185 YFEHPATFDTLAMASKKKEAIKKDLIKFTEGKEYYAKIGKAWKRGYLLFGPPGTGKSTMIAAMANCL 251 (431)
Q Consensus 185 ~~~~p~~f~~l~g~~~~k~~i~~~l~~~~~~~~~~~~~g~~~~rg~LL~GPPGtGKTsla~aiA~~l 251 (431)
+-..|.+|++| .+++++.+.. +..++... ...+|+.||||||||+++.+++..+
T Consensus 16 ~~~~p~~~~~L--n~~Q~~av~~-~~~~i~~~----------~~~~li~G~aGTGKT~ll~~~~~~l 69 (459)
T 3upu_A 16 PRGSHMTFDDL--TEGQKNAFNI-VMKAIKEK----------KHHVTINGPAGTGATTLTKFIIEAL 69 (459)
T ss_dssp -----CCSSCC--CHHHHHHHHH-HHHHHHSS----------SCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred cccCCCccccC--CHHHHHHHHH-HHHHHhcC----------CCEEEEEeCCCCCHHHHHHHHHHHH
Confidence 45567788875 5566665543 33333321 2378999999999999999999876
No 177
>2h92_A Cytidylate kinase; rossmann fold, transferase; HET: C5P PG4; 2.30A {Staphylococcus aureus}
Probab=96.87 E-value=0.0006 Score=62.09 Aligned_cols=32 Identities=31% Similarity=0.310 Sum_probs=28.8
Q ss_pred ceeEEeCCCCCcHHHHHHHHHHHcCCCeEEec
Q 035603 228 RGYLLFGPPGTGKSTMIAAMANCLNYDVYDLE 259 (431)
Q Consensus 228 rg~LL~GPPGtGKTsla~aiA~~l~~~i~~l~ 259 (431)
.-+.|.||||||||++++.+|..+|+++++.+
T Consensus 4 ~~i~i~G~~gsGkst~~~~l~~~~g~~~~~~d 35 (219)
T 2h92_A 4 INIALDGPAAAGKSTIAKRVASELSMIYVDTG 35 (219)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHHTTCEEEEHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHhcCCceecCC
Confidence 45889999999999999999999999888764
No 178
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=96.87 E-value=0.0011 Score=64.62 Aligned_cols=51 Identities=12% Similarity=0.174 Sum_probs=38.0
Q ss_pred CCCCCceeEEeCCCCCcHHHHHHHHHHHc---------CCCeEEecccCcCChHHHHHHH
Q 035603 223 GKAWKRGYLLFGPPGTGKSTMIAAMANCL---------NYDVYDLELTSVENNNELRSLL 273 (431)
Q Consensus 223 g~~~~rg~LL~GPPGtGKTsla~aiA~~l---------~~~i~~l~~~~~~~~~~l~~l~ 273 (431)
|++...-++++||||+|||+++..+|... +..++.++.........+....
T Consensus 103 Gl~~G~i~~i~G~~GsGKT~la~~la~~~~~~~~~gg~~~~vlyi~~e~~~~~~~l~~~~ 162 (324)
T 2z43_A 103 GIETRTMTEFFGEFGSGKTQLCHQLSVNVQLPPEKGGLSGKAVYIDTEGTFRWERIENMA 162 (324)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSSCCCHHHHHHHH
T ss_pred CCCCCcEEEEECCCCCCHhHHHHHHHHHHhcccccCCCCCeEEEEECCCCCCHHHHHHHH
Confidence 67777789999999999999999999875 4566777666533355555543
No 179
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=96.83 E-value=0.013 Score=66.27 Aligned_cols=172 Identities=16% Similarity=0.183 Sum_probs=87.1
Q ss_pred CCCCccccccChhhHHHHHHHHHHHHhCHHHHHHhCCCCCceeEEeCCCCCcHHHHHHHHHHH-------cCCCeEEecc
Q 035603 188 HPATFDTLAMASKKKEAIKKDLIKFTEGKEYYAKIGKAWKRGYLLFGPPGTGKSTMIAAMANC-------LNYDVYDLEL 260 (431)
Q Consensus 188 ~p~~f~~l~g~~~~k~~i~~~l~~~~~~~~~~~~~g~~~~rg~LL~GPPGtGKTsla~aiA~~-------l~~~i~~l~~ 260 (431)
.|.....++|-++..++|.+.+... -...+-+.|+|++|+|||+||+.+++. ....++.++.
T Consensus 119 ~p~~~~~~vgR~~~~~~l~~~l~~~-----------~~~~~~v~i~G~gG~GKTtLa~~~~~~~~~~~~~~~~~~~~v~~ 187 (1249)
T 3sfz_A 119 VPQRPVIFVTRKKLVHAIQQKLWKL-----------NGEPGWVTIYGMAGCGKSVLAAEAVRDHSLLEGCFSGGVHWVSI 187 (1249)
T ss_dssp CCCCCSSCCCCHHHHHHHHHHHHTT-----------TTSCEEEEEECSTTSSHHHHHHHHTCCHHHHTTTSTTCEEEEEC
T ss_pred CCCCCceeccHHHHHHHHHHHHhhc-----------cCCCCEEEEEeCCCCCHHHHHHHHhcChhHHHhhCCCeEEEEEE
Confidence 4555567888887777776654211 122456889999999999999998865 2223556666
Q ss_pred cCcCChH---HHHHHHHHhhhc-------ccchhhHHHHHHH-----------HhcCcccC-----CCCceEEEEecCCC
Q 035603 261 TSVENNN---ELRSLLVDISSK-------KKKSNVTLSGLLN-----------CIGGLWST-----CGGERIIVFTTNHV 314 (431)
Q Consensus 261 ~~~~~~~---~l~~l~~~~~~~-------~~~~~~~~s~lL~-----------~ldg~~~~-----~~~~~ivI~TTN~~ 314 (431)
+...... .+..+....... ..........|.. .+|.++.. -+.+.-||.||..+
T Consensus 188 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~LlvlDd~~~~~~~~~~~~~~~ilvTtR~~ 267 (1249)
T 3sfz_A 188 GKQDKSGLLMKLQNLCMRLDQEESFSQRLPLNIEEAKDRLRVLMLRKHPRSLLILDDVWDPWVLKAFDNQCQILLTTRDK 267 (1249)
T ss_dssp CSCCHHHHHHHHHHHHHHHTTTCTTCSSCCSSHHHHHHHHHHHTSSSSCSCEEEEESCCCHHHHTTTCSSCEEEEEESST
T ss_pred CCcCchHHHHHHHHHHHHhhhhcccccCCCCCHHHHHHHHHHHHhccCCCEEEEEecCCCHHHHHhhcCCCEEEEEcCCH
Confidence 5532211 122222221111 0111112222221 22333211 12235677777755
Q ss_pred CCCChhhhccCceeEEEEcCC-CCHHHHHHHHHHhhchhcchhHHHHHhHhccCCCCHHHH
Q 035603 315 DKLDPALIRRGRMDKHIEMPY-CCFEAFKVLAKNYLEIESHELFHEIGSLLGETDITPADV 374 (431)
Q Consensus 315 ~~Ld~AllRpGRfd~~I~~~~-p~~~~r~~i~~~~l~~~~~~~~~~i~~l~~~~~~s~adI 374 (431)
...... . .....+.++. .+.++-.+++..+.........+...++++..+-.|--|
T Consensus 268 ~~~~~~-~---~~~~~~~~~~~l~~~~a~~l~~~~~~~~~~~~~~~~~~i~~~~~glPLal 324 (1249)
T 3sfz_A 268 SVTDSV-M---GPKHVVPVESGLGREKGLEILSLFVNMKKEDLPAEAHSIIKECKGSPLVV 324 (1249)
T ss_dssp TTTTTC-C---SCBCCEECCSSCCHHHHHHHHHHHHTSCSTTCCTHHHHHHHHTTTCHHHH
T ss_pred HHHHhh-c---CCceEEEecCCCCHHHHHHHHHHhhCCChhhCcHHHHHHHHHhCCCHHHH
Confidence 333211 1 2335577775 777777788877654332222233444555444445444
No 180
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=96.81 E-value=0.00067 Score=61.86 Aligned_cols=31 Identities=39% Similarity=0.454 Sum_probs=27.4
Q ss_pred ceeEEeCCCCCcHHHHHHHHHHHcCCCeEEec
Q 035603 228 RGYLLFGPPGTGKSTMIAAMANCLNYDVYDLE 259 (431)
Q Consensus 228 rg~LL~GPPGtGKTsla~aiA~~l~~~i~~l~ 259 (431)
.-+.|.|++|+||||+++.+|. +|+++++.+
T Consensus 5 ~~I~i~G~~GSGKST~~~~L~~-lg~~~id~D 35 (218)
T 1vht_A 5 YIVALTGGIGSGKSTVANAFAD-LGINVIDAD 35 (218)
T ss_dssp EEEEEECCTTSCHHHHHHHHHH-TTCEEEEHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH-cCCEEEEcc
Confidence 4578999999999999999998 898888764
No 181
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=96.79 E-value=0.00081 Score=62.33 Aligned_cols=33 Identities=24% Similarity=0.356 Sum_probs=28.6
Q ss_pred CceeEEeCCCCCcHHHHHHHHHHHcCCCeEEec
Q 035603 227 KRGYLLFGPPGTGKSTMIAAMANCLNYDVYDLE 259 (431)
Q Consensus 227 ~rg~LL~GPPGtGKTsla~aiA~~l~~~i~~l~ 259 (431)
+.-+.|.||||||||++++.+|..+|+++++.+
T Consensus 16 ~~~i~i~G~~gsGKst~~~~l~~~lg~~~~d~d 48 (236)
T 1q3t_A 16 TIQIAIDGPASSGKSTVAKIIAKDFGFTYLDTG 48 (236)
T ss_dssp CCEEEEECSSCSSHHHHHHHHHHHHCCEEEEHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHcCCceecCC
Confidence 345789999999999999999999998887753
No 182
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=96.77 E-value=0.00055 Score=65.63 Aligned_cols=31 Identities=26% Similarity=0.292 Sum_probs=25.6
Q ss_pred ceeEEeCCCCCcHHHHHHHHHHHc-CCCeEEe
Q 035603 228 RGYLLFGPPGTGKSTMIAAMANCL-NYDVYDL 258 (431)
Q Consensus 228 rg~LL~GPPGtGKTsla~aiA~~l-~~~i~~l 258 (431)
+-++|.||||+||||+++.++..+ ++.++..
T Consensus 3 ~~I~l~G~~GsGKST~a~~L~~~~~~~~~i~~ 34 (301)
T 1ltq_A 3 KIILTIGCPGSGKSTWAREFIAKNPGFYNINR 34 (301)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHSTTEEEECH
T ss_pred eEEEEECCCCCCHHHHHHHHHHhCCCcEEecc
Confidence 468999999999999999999974 6655543
No 183
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=96.75 E-value=0.0021 Score=63.26 Aligned_cols=51 Identities=16% Similarity=0.131 Sum_probs=37.2
Q ss_pred CCCCCceeEEeCCCCCcHHHHHHHHHHHc---------CCCeEEecccCcCChHHHHHHH
Q 035603 223 GKAWKRGYLLFGPPGTGKSTMIAAMANCL---------NYDVYDLELTSVENNNELRSLL 273 (431)
Q Consensus 223 g~~~~rg~LL~GPPGtGKTsla~aiA~~l---------~~~i~~l~~~~~~~~~~l~~l~ 273 (431)
|++...-++|+||||+|||+|+..+|... +..++.++.........+....
T Consensus 118 Gl~~G~i~~I~G~~GsGKTtla~~la~~~~~~~~~gg~~~~vlyi~~E~~~~~~~l~~~~ 177 (343)
T 1v5w_A 118 GIESMAITEAFGEFRTGKTQLSHTLCVTAQLPGAGGYPGGKIIFIDTENTFRPDRLRDIA 177 (343)
T ss_dssp SBCSSEEEEEECCTTCTHHHHHHHHHHHTTSCBTTTBCCCEEEEEESSSCCCHHHHHHHH
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCeEEEEECCCCCCHHHHHHHH
Confidence 67777778999999999999999999863 4566667665533445555443
No 184
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=96.74 E-value=0.00095 Score=60.36 Aligned_cols=29 Identities=28% Similarity=0.425 Sum_probs=25.2
Q ss_pred CCCCceeEEeCCCCCcHHHHHHHHHHHcC
Q 035603 224 KAWKRGYLLFGPPGTGKSTMIAAMANCLN 252 (431)
Q Consensus 224 ~~~~rg~LL~GPPGtGKTsla~aiA~~l~ 252 (431)
...++-++|.||||+||||+++.|+..++
T Consensus 9 ~~~~~~i~l~G~sGsGKsTl~~~L~~~~~ 37 (204)
T 2qor_A 9 MARIPPLVVCGPSGVGKGTLIKKVLSEFP 37 (204)
T ss_dssp CCCCCCEEEECCTTSCHHHHHHHHHHHCT
T ss_pred cccCCEEEEECCCCCCHHHHHHHHHHhCc
Confidence 34456789999999999999999999885
No 185
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=96.74 E-value=0.00086 Score=59.81 Aligned_cols=27 Identities=26% Similarity=0.546 Sum_probs=23.6
Q ss_pred eeEEeCCCCCcHHHHHHHHHHHcCCCe
Q 035603 229 GYLLFGPPGTGKSTMIAAMANCLNYDV 255 (431)
Q Consensus 229 g~LL~GPPGtGKTsla~aiA~~l~~~i 255 (431)
-+.|.||+|+|||||++.|++.++..+
T Consensus 2 ~i~l~G~nGsGKTTLl~~l~g~l~i~~ 28 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLVKKIVERLGKRA 28 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHGGGE
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCcC
Confidence 368999999999999999999987544
No 186
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=96.73 E-value=0.00044 Score=62.52 Aligned_cols=27 Identities=26% Similarity=0.172 Sum_probs=23.4
Q ss_pred CceeEEeCCCCCcHHHHHHHHHHHcCC
Q 035603 227 KRGYLLFGPPGTGKSTMIAAMANCLNY 253 (431)
Q Consensus 227 ~rg~LL~GPPGtGKTsla~aiA~~l~~ 253 (431)
+.-+.|.|||||||||+++.+|..++.
T Consensus 9 ~~~I~l~G~~GsGKsT~~~~L~~~l~~ 35 (215)
T 1nn5_A 9 GALIVLEGVDRAGKSTQSRKLVEALCA 35 (215)
T ss_dssp CCEEEEEESTTSSHHHHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 356889999999999999999998653
No 187
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=96.73 E-value=0.00067 Score=61.32 Aligned_cols=32 Identities=22% Similarity=0.244 Sum_probs=27.0
Q ss_pred ceeEEeCCCCCcHHHHHHHHHHHc-CCCeEEec
Q 035603 228 RGYLLFGPPGTGKSTMIAAMANCL-NYDVYDLE 259 (431)
Q Consensus 228 rg~LL~GPPGtGKTsla~aiA~~l-~~~i~~l~ 259 (431)
.-+.|.||||+||||+++.|++.+ ++.++..+
T Consensus 22 ~~i~i~G~~GsGKSTl~~~L~~~~~~~~~i~~D 54 (207)
T 2qt1_A 22 FIIGISGVTNSGKTTLAKNLQKHLPNCSVISQD 54 (207)
T ss_dssp EEEEEEESTTSSHHHHHHHHHTTSTTEEEEEGG
T ss_pred eEEEEECCCCCCHHHHHHHHHHhcCCcEEEeCC
Confidence 446799999999999999999988 67666655
No 188
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=96.72 E-value=0.001 Score=62.42 Aligned_cols=28 Identities=21% Similarity=0.186 Sum_probs=25.4
Q ss_pred CceeEEeCCCCCcHHHHHHHHHHHcCCC
Q 035603 227 KRGYLLFGPPGTGKSTMIAAMANCLNYD 254 (431)
Q Consensus 227 ~rg~LL~GPPGtGKTsla~aiA~~l~~~ 254 (431)
+.-+.|.|||||||||+++.||..++++
T Consensus 22 ~~iI~I~G~~GSGKST~a~~L~~~lg~~ 49 (252)
T 1uj2_A 22 PFLIGVSGGTASGKSSVCAKIVQLLGQN 49 (252)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHTTGG
T ss_pred cEEEEEECCCCCCHHHHHHHHHHHhhhh
Confidence 3468899999999999999999999987
No 189
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=96.70 E-value=0.00072 Score=61.53 Aligned_cols=38 Identities=21% Similarity=0.098 Sum_probs=29.3
Q ss_pred CCCCCceeEEeCCCCCcHHHHHHHHHHHc---CCCeEEecc
Q 035603 223 GKAWKRGYLLFGPPGTGKSTMIAAMANCL---NYDVYDLEL 260 (431)
Q Consensus 223 g~~~~rg~LL~GPPGtGKTsla~aiA~~l---~~~i~~l~~ 260 (431)
|++.+..++|.||||+|||+|++.+|..+ +..++.++.
T Consensus 19 gi~~G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~v~~~~~ 59 (235)
T 2w0m_A 19 GIPQGFFIALTGEPGTGKTIFSLHFIAKGLRDGDPCIYVTT 59 (235)
T ss_dssp SEETTCEEEEECSTTSSHHHHHHHHHHHHHHHTCCEEEEES
T ss_pred CCcCCCEEEEEcCCCCCHHHHHHHHHHHHHHCCCeEEEEEc
Confidence 45666678999999999999999999654 445555544
No 190
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=96.70 E-value=0.0012 Score=61.97 Aligned_cols=30 Identities=37% Similarity=0.596 Sum_probs=27.0
Q ss_pred ceeEEeCCCCCcHHHHHHHHHHHcCCCeEE
Q 035603 228 RGYLLFGPPGTGKSTMIAAMANCLNYDVYD 257 (431)
Q Consensus 228 rg~LL~GPPGtGKTsla~aiA~~l~~~i~~ 257 (431)
.-+.|.||+||||||+++.||..+|+.+++
T Consensus 28 ~~I~I~G~~GsGKSTl~k~La~~Lg~~~~d 57 (252)
T 4e22_A 28 PVITVDGPSGAGKGTLCKALAESLNWRLLD 57 (252)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHTTCEEEE
T ss_pred cEEEEECCCCCCHHHHHHHHHHhcCCCcCC
Confidence 457899999999999999999999987775
No 191
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=96.69 E-value=0.00086 Score=65.95 Aligned_cols=35 Identities=26% Similarity=0.419 Sum_probs=30.9
Q ss_pred ceeEEeCCCCCcHHHHHHHHHHHcCCCeEEecccC
Q 035603 228 RGYLLFGPPGTGKSTMIAAMANCLNYDVYDLELTS 262 (431)
Q Consensus 228 rg~LL~GPPGtGKTsla~aiA~~l~~~i~~l~~~~ 262 (431)
+-++|.||+|+|||+|+..||..++..|++.|...
T Consensus 41 ~lIvI~GPTgsGKTtLa~~LA~~l~~eiIs~Ds~q 75 (339)
T 3a8t_A 41 KLLVLMGATGTGKSRLSIDLAAHFPLEVINSDKMQ 75 (339)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTTSCEEEEECCSST
T ss_pred ceEEEECCCCCCHHHHHHHHHHHCCCcEEcccccc
Confidence 46889999999999999999999999888877653
No 192
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=96.68 E-value=0.0011 Score=64.37 Aligned_cols=36 Identities=17% Similarity=0.458 Sum_probs=30.9
Q ss_pred CCceeEEeCCCCCcHHHHHHHHHHHcCCCeEEeccc
Q 035603 226 WKRGYLLFGPPGTGKSTMIAAMANCLNYDVYDLELT 261 (431)
Q Consensus 226 ~~rg~LL~GPPGtGKTsla~aiA~~l~~~i~~l~~~ 261 (431)
.++-+++.||+|+|||+|+..+|..++..++..|..
T Consensus 9 ~~~~i~i~GptgsGKt~la~~La~~~~~~iis~Ds~ 44 (316)
T 3foz_A 9 LPKAIFLMGPTASGKTALAIELRKILPVELISVDSA 44 (316)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHHHSCEEEEECCTT
T ss_pred CCcEEEEECCCccCHHHHHHHHHHhCCCcEEecccc
Confidence 345788999999999999999999999888777653
No 193
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=96.67 E-value=0.0011 Score=58.79 Aligned_cols=25 Identities=40% Similarity=0.627 Sum_probs=22.1
Q ss_pred eeEEeCCCCCcHHHHHHHHHHHcCC
Q 035603 229 GYLLFGPPGTGKSTMIAAMANCLNY 253 (431)
Q Consensus 229 g~LL~GPPGtGKTsla~aiA~~l~~ 253 (431)
-+.|.||||+||||+++.|+..++.
T Consensus 4 ii~l~G~~GaGKSTl~~~L~~~~~g 28 (189)
T 2bdt_A 4 LYIITGPAGVGKSTTCKRLAAQLDN 28 (189)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHSSS
T ss_pred EEEEECCCCCcHHHHHHHHhcccCC
Confidence 4789999999999999999987654
No 194
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=96.64 E-value=0.0017 Score=57.55 Aligned_cols=26 Identities=35% Similarity=0.505 Sum_probs=23.0
Q ss_pred CceeEEeCCCCCcHHHHHHHHHHHcC
Q 035603 227 KRGYLLFGPPGTGKSTMIAAMANCLN 252 (431)
Q Consensus 227 ~rg~LL~GPPGtGKTsla~aiA~~l~ 252 (431)
+.-++|.|+||+||||+++.+|..++
T Consensus 13 ~~~i~l~G~~GsGKsT~~~~L~~~l~ 38 (186)
T 2yvu_A 13 GIVVWLTGLPGSGKTTIATRLADLLQ 38 (186)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHHHH
Confidence 45678999999999999999999874
No 195
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=96.63 E-value=0.00075 Score=68.38 Aligned_cols=34 Identities=26% Similarity=0.287 Sum_probs=28.4
Q ss_pred CCceeEEeCCCCCcHHHHHHHHHHHcCCCeEEec
Q 035603 226 WKRGYLLFGPPGTGKSTMIAAMANCLNYDVYDLE 259 (431)
Q Consensus 226 ~~rg~LL~GPPGtGKTsla~aiA~~l~~~i~~l~ 259 (431)
.+.-++|.||||+||||+++.++..+++.++..+
T Consensus 257 ~~~lIil~G~pGSGKSTla~~L~~~~~~~~i~~D 290 (416)
T 3zvl_A 257 NPEVVVAVGFPGAGKSTFIQEHLVSAGYVHVNRD 290 (416)
T ss_dssp SCCEEEEESCTTSSHHHHHHHHTGGGTCEECCGG
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHhcCcEEEccc
Confidence 3566889999999999999999999987665543
No 196
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=96.61 E-value=0.0014 Score=58.17 Aligned_cols=26 Identities=15% Similarity=0.397 Sum_probs=22.9
Q ss_pred CceeEEeCCCCCcHHHHHHHHHHHcC
Q 035603 227 KRGYLLFGPPGTGKSTMIAAMANCLN 252 (431)
Q Consensus 227 ~rg~LL~GPPGtGKTsla~aiA~~l~ 252 (431)
++-+.|.||+|+|||||+++|++.+.
T Consensus 5 g~~i~i~GpsGsGKSTL~~~L~~~~~ 30 (180)
T 1kgd_A 5 RKTLVLLGAHGVGRRHIKNTLITKHP 30 (180)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHCT
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhCC
Confidence 45688999999999999999999764
No 197
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=96.60 E-value=0.0012 Score=59.29 Aligned_cols=26 Identities=27% Similarity=0.243 Sum_probs=23.1
Q ss_pred CCceeEEeCCCCCcHHHHHHHHHHHc
Q 035603 226 WKRGYLLFGPPGTGKSTMIAAMANCL 251 (431)
Q Consensus 226 ~~rg~LL~GPPGtGKTsla~aiA~~l 251 (431)
.+.-+.|.||||+||||+++.|+..+
T Consensus 5 ~g~~i~l~G~~GsGKSTl~~~L~~~~ 30 (207)
T 2j41_A 5 KGLLIVLSGPSGVGKGTVRKRIFEDP 30 (207)
T ss_dssp CCCEEEEECSTTSCHHHHHHHHHHCT
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHhh
Confidence 44568899999999999999999987
No 198
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=96.57 E-value=0.0011 Score=63.52 Aligned_cols=31 Identities=26% Similarity=0.281 Sum_probs=27.0
Q ss_pred ceeEEeCCCCCcHHHHHHHHHHHcCCCeEEec
Q 035603 228 RGYLLFGPPGTGKSTMIAAMANCLNYDVYDLE 259 (431)
Q Consensus 228 rg~LL~GPPGtGKTsla~aiA~~l~~~i~~l~ 259 (431)
.-+.|.|||||||||+++.++ .+|+++++.+
T Consensus 76 ~iI~I~G~~GSGKSTva~~La-~lg~~~id~D 106 (281)
T 2f6r_A 76 YVLGLTGISGSGKSSVAQRLK-NLGAYIIDSD 106 (281)
T ss_dssp EEEEEEECTTSCHHHHHHHHH-HHTCEEEEHH
T ss_pred EEEEEECCCCCCHHHHHHHHH-HCCCcEEehh
Confidence 458899999999999999999 6898887764
No 199
>3fdi_A Uncharacterized protein; cytidylate kinase like protein, PSI, MCSG, PRK04182 class ME structural genomics, protein structure initiative; 2.20A {Eubacterium ventriosum}
Probab=96.56 E-value=0.0013 Score=59.90 Aligned_cols=30 Identities=17% Similarity=0.145 Sum_probs=28.0
Q ss_pred ceeEEeCCCCCcHHHHHHHHHHHcCCCeEE
Q 035603 228 RGYLLFGPPGTGKSTMIAAMANCLNYDVYD 257 (431)
Q Consensus 228 rg~LL~GPPGtGKTsla~aiA~~l~~~i~~ 257 (431)
.-+.|.||+|||||++++.+|..||+++++
T Consensus 7 ~iI~i~g~~GsGk~ti~~~la~~lg~~~~D 36 (201)
T 3fdi_A 7 IIIAIGREFGSGGHLVAKKLAEHYNIPLYS 36 (201)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHTTCCEEC
T ss_pred eEEEEeCCCCCCHHHHHHHHHHHhCcCEEC
Confidence 357899999999999999999999999997
No 200
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=96.55 E-value=0.0016 Score=59.07 Aligned_cols=34 Identities=26% Similarity=0.342 Sum_probs=27.4
Q ss_pred CCceeEEeCCCCCcHHHHHHHHHHHcC----CCeEEec
Q 035603 226 WKRGYLLFGPPGTGKSTMIAAMANCLN----YDVYDLE 259 (431)
Q Consensus 226 ~~rg~LL~GPPGtGKTsla~aiA~~l~----~~i~~l~ 259 (431)
.+.-++|.||||+||||+++.|+..++ .+++.++
T Consensus 24 ~~~~i~~~G~~GsGKsT~~~~l~~~l~~~~g~~~~~~~ 61 (211)
T 1m7g_A 24 RGLTIWLTGLSASGKSTLAVELEHQLVRDRRVHAYRLD 61 (211)
T ss_dssp SCEEEEEECSTTSSHHHHHHHHHHHHHHHHCCCEEEEC
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHhccccCCcEEEEC
Confidence 345688999999999999999999775 4566555
No 201
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=96.52 E-value=0.0024 Score=63.08 Aligned_cols=51 Identities=18% Similarity=0.207 Sum_probs=35.7
Q ss_pred hCCCCCceeEEeCCCCCcHHHHHHHHHHHcC---------CCeEEecccCcCChHHHHHH
Q 035603 222 IGKAWKRGYLLFGPPGTGKSTMIAAMANCLN---------YDVYDLELTSVENNNELRSL 272 (431)
Q Consensus 222 ~g~~~~rg~LL~GPPGtGKTsla~aiA~~l~---------~~i~~l~~~~~~~~~~l~~l 272 (431)
.|++...-+.|+||||+|||+|++.+|.... -.++.++.........+..+
T Consensus 126 ggi~~G~i~~I~G~~GsGKTTL~~~l~~~~~~~~~~Gg~~G~vi~i~~e~~~~~~~i~~i 185 (349)
T 1pzn_A 126 GGIETQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTENTFRPERIREI 185 (349)
T ss_dssp SSEESSEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTSCSCEEEEEESSSCCCHHHHHHH
T ss_pred CCCCCCeEEEEECCCCCCHHHHHHHHHHHhccchhcCCCCCeEEEEeCCCCCCHHHHHHH
Confidence 3677777899999999999999999999872 24455655443223344433
No 202
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=96.51 E-value=0.0042 Score=55.99 Aligned_cols=34 Identities=18% Similarity=0.248 Sum_probs=27.3
Q ss_pred CceeEEeCCCCCcHHHHHHHHHHHc---CCCeEEecc
Q 035603 227 KRGYLLFGPPGTGKSTMIAAMANCL---NYDVYDLEL 260 (431)
Q Consensus 227 ~rg~LL~GPPGtGKTsla~aiA~~l---~~~i~~l~~ 260 (431)
+.-+.|.||+|+||||+++.|+..+ +.+++.++.
T Consensus 22 ~~~i~i~G~~GsGKstl~~~l~~~~~~~~~~v~~~~~ 58 (201)
T 1rz3_A 22 RLVLGIDGLSRSGKTTLANQLSQTLREQGISVCVFHM 58 (201)
T ss_dssp SEEEEEEECTTSSHHHHHHHHHHHHHHTTCCEEEEEG
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHhhcCCeEEEecc
Confidence 4457899999999999999999876 666666543
No 203
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=96.49 E-value=0.0012 Score=60.05 Aligned_cols=35 Identities=20% Similarity=0.237 Sum_probs=29.1
Q ss_pred CceeEEeCCCCCcHHHHHHHHHHHcCCCeEEecccC
Q 035603 227 KRGYLLFGPPGTGKSTMIAAMANCLNYDVYDLELTS 262 (431)
Q Consensus 227 ~rg~LL~GPPGtGKTsla~aiA~~l~~~i~~l~~~~ 262 (431)
.++++|.||+|+|||++|..+|...+ .++..|...
T Consensus 34 g~~ilI~GpsGsGKStLA~~La~~g~-~iIsdDs~~ 68 (205)
T 2qmh_A 34 GLGVLITGDSGVGKSETALELVQRGH-RLIADDRVD 68 (205)
T ss_dssp TEEEEEECCCTTTTHHHHHHHHTTTC-EEEESSEEE
T ss_pred CEEEEEECCCCCCHHHHHHHHHHhCC-eEEecchhh
Confidence 47899999999999999999999876 666655443
No 204
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=96.48 E-value=0.0021 Score=64.02 Aligned_cols=40 Identities=20% Similarity=0.234 Sum_probs=32.6
Q ss_pred CCCCCceeEEeCCCCCcHHHHHHHHHHHc---CCCeEEecccC
Q 035603 223 GKAWKRGYLLFGPPGTGKSTMIAAMANCL---NYDVYDLELTS 262 (431)
Q Consensus 223 g~~~~rg~LL~GPPGtGKTsla~aiA~~l---~~~i~~l~~~~ 262 (431)
|++..+-++|+||||+|||+|+..+|..+ +.+++.++...
T Consensus 70 Gl~~G~li~I~G~pGsGKTtlal~la~~~~~~g~~vlyi~~E~ 112 (366)
T 1xp8_A 70 GIPRGRITEIYGPESGGKTTLALAIVAQAQKAGGTCAFIDAEH 112 (366)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSC
T ss_pred CccCCcEEEEEcCCCCChHHHHHHHHHHHHHCCCeEEEEECCC
Confidence 56777789999999999999999888754 56777777654
No 205
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=96.48 E-value=0.0014 Score=64.51 Aligned_cols=34 Identities=18% Similarity=0.287 Sum_probs=29.3
Q ss_pred ceeEEeCCCCCcHHHHHHHHHHHcCCCeEEeccc
Q 035603 228 RGYLLFGPPGTGKSTMIAAMANCLNYDVYDLELT 261 (431)
Q Consensus 228 rg~LL~GPPGtGKTsla~aiA~~l~~~i~~l~~~ 261 (431)
+-+++.||+|+|||+++..||..++..++..|.-
T Consensus 8 ~lI~I~GptgSGKTtla~~La~~l~~~iis~Ds~ 41 (340)
T 3d3q_A 8 FLIVIVGPTASGKTELSIEVAKKFNGEIISGDSM 41 (340)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHTTEEEEECCSS
T ss_pred ceEEEECCCcCcHHHHHHHHHHHcCCceeccccc
Confidence 4688999999999999999999999777776644
No 206
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=96.46 E-value=0.0019 Score=59.44 Aligned_cols=40 Identities=25% Similarity=0.252 Sum_probs=30.5
Q ss_pred CCCCCceeEEeCCCCCcHHHHHHHHHHH---cCCCeEEecccC
Q 035603 223 GKAWKRGYLLFGPPGTGKSTMIAAMANC---LNYDVYDLELTS 262 (431)
Q Consensus 223 g~~~~rg~LL~GPPGtGKTsla~aiA~~---l~~~i~~l~~~~ 262 (431)
|++.+.-++|+||||+|||+++..+|.. .+..++.++...
T Consensus 19 Gl~~G~~~~i~G~~GsGKTtl~~~~~~~~~~~~~~v~~~~~e~ 61 (247)
T 2dr3_A 19 GIPERNVVLLSGGPGTGKTIFSQQFLWNGLKMGEPGIYVALEE 61 (247)
T ss_dssp SEETTCEEEEEECTTSSHHHHHHHHHHHHHHTTCCEEEEESSS
T ss_pred CCCCCcEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEEccC
Confidence 5666777899999999999998888754 355666666543
No 207
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=96.46 E-value=0.0017 Score=59.08 Aligned_cols=27 Identities=30% Similarity=0.294 Sum_probs=23.6
Q ss_pred CceeEEeCCCCCcHHHHHHHHHHHcCC
Q 035603 227 KRGYLLFGPPGTGKSTMIAAMANCLNY 253 (431)
Q Consensus 227 ~rg~LL~GPPGtGKTsla~aiA~~l~~ 253 (431)
++-+.|.||+|+||||+++.|+..+..
T Consensus 8 g~~i~l~GpsGsGKsTl~~~L~~~~~~ 34 (208)
T 3tau_A 8 GLLIVLSGPSGVGKGTVREAVFKDPET 34 (208)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHSTTC
T ss_pred CcEEEEECcCCCCHHHHHHHHHhhCCC
Confidence 456889999999999999999998753
No 208
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=96.39 E-value=0.0014 Score=60.47 Aligned_cols=26 Identities=38% Similarity=0.429 Sum_probs=23.2
Q ss_pred CCCCCceeEEeCCCCCcHHHHHHHHH
Q 035603 223 GKAWKRGYLLFGPPGTGKSTMIAAMA 248 (431)
Q Consensus 223 g~~~~rg~LL~GPPGtGKTsla~aiA 248 (431)
|++...-+.|.||+|+|||||+++|+
T Consensus 26 gi~~G~~~~l~GpnGsGKSTLl~~i~ 51 (251)
T 2ehv_A 26 GFPEGTTVLLTGGTGTGKTTFAAQFI 51 (251)
T ss_dssp SEETTCEEEEECCTTSSHHHHHHHHH
T ss_pred CCCCCcEEEEEeCCCCCHHHHHHHHH
Confidence 56666779999999999999999998
No 209
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=96.38 E-value=0.0024 Score=63.42 Aligned_cols=38 Identities=18% Similarity=0.289 Sum_probs=30.9
Q ss_pred CCCCCceeEEeCCCCCcHHHHHHHHHHHc---CCCeEEecc
Q 035603 223 GKAWKRGYLLFGPPGTGKSTMIAAMANCL---NYDVYDLEL 260 (431)
Q Consensus 223 g~~~~rg~LL~GPPGtGKTsla~aiA~~l---~~~i~~l~~ 260 (431)
|++..+-++|+||||+|||+||..+|..+ +..++.++.
T Consensus 59 Gl~~G~ii~I~G~pGsGKTtLal~la~~~~~~g~~vlyid~ 99 (356)
T 1u94_A 59 GLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDA 99 (356)
T ss_dssp SEETTSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEES
T ss_pred CccCCeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEeC
Confidence 57777889999999999999999988753 556666665
No 210
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=96.37 E-value=0.0019 Score=62.97 Aligned_cols=34 Identities=24% Similarity=0.307 Sum_probs=28.8
Q ss_pred ceeEEeCCCCCcHHHHHHHHHHHcCCCeEEeccc
Q 035603 228 RGYLLFGPPGTGKSTMIAAMANCLNYDVYDLELT 261 (431)
Q Consensus 228 rg~LL~GPPGtGKTsla~aiA~~l~~~i~~l~~~ 261 (431)
+-+++.||+|+|||+|+..+|..++..++..|..
T Consensus 4 ~~i~i~GptgsGKt~la~~La~~~~~~iis~Ds~ 37 (322)
T 3exa_A 4 KLVAIVGPTAVGKTKTSVMLAKRLNGEVISGDSM 37 (322)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHTTTEEEEECCGG
T ss_pred cEEEEECCCcCCHHHHHHHHHHhCccceeecCcc
Confidence 4578899999999999999999998877766543
No 211
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=96.36 E-value=0.0032 Score=61.11 Aligned_cols=28 Identities=18% Similarity=0.165 Sum_probs=24.8
Q ss_pred CCCCCceeEEeCCCCCcHHHHHHHHHHH
Q 035603 223 GKAWKRGYLLFGPPGTGKSTMIAAMANC 250 (431)
Q Consensus 223 g~~~~rg~LL~GPPGtGKTsla~aiA~~ 250 (431)
|++...-++++||||+|||+++..+|..
T Consensus 94 Gl~~g~i~~i~G~~gsGKT~la~~la~~ 121 (322)
T 2i1q_A 94 GLESQSVTEFAGVFGSGKTQIMHQSCVN 121 (322)
T ss_dssp SEETTEEEEEEESTTSSHHHHHHHHHHH
T ss_pred CccCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 5677777899999999999999999875
No 212
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=96.34 E-value=0.0033 Score=56.98 Aligned_cols=26 Identities=38% Similarity=0.604 Sum_probs=22.9
Q ss_pred CceeEEeCCCCCcHHHHHHHHHHHcC
Q 035603 227 KRGYLLFGPPGTGKSTMIAAMANCLN 252 (431)
Q Consensus 227 ~rg~LL~GPPGtGKTsla~aiA~~l~ 252 (431)
+.-+.|.||+|+|||||+++|++.+.
T Consensus 22 g~~v~I~G~sGsGKSTl~~~l~~~~~ 47 (208)
T 3c8u_A 22 RQLVALSGAPGSGKSTLSNPLAAALS 47 (208)
T ss_dssp CEEEEEECCTTSCTHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHh
Confidence 44567999999999999999999885
No 213
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=96.33 E-value=0.0024 Score=57.18 Aligned_cols=26 Identities=23% Similarity=0.609 Sum_probs=22.7
Q ss_pred CceeEEeCCCCCcHHHHHHHHHHHcC
Q 035603 227 KRGYLLFGPPGTGKSTMIAAMANCLN 252 (431)
Q Consensus 227 ~rg~LL~GPPGtGKTsla~aiA~~l~ 252 (431)
+.-+.|.||+|+||||+++.|++.+.
T Consensus 7 g~ii~l~Gp~GsGKSTl~~~L~~~~~ 32 (205)
T 3tr0_A 7 ANLFIISAPSGAGKTSLVRALVKALA 32 (205)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHSS
T ss_pred CcEEEEECcCCCCHHHHHHHHHhhCC
Confidence 34578999999999999999999864
No 214
>4b3f_X DNA-binding protein smubp-2; hydrolase, helicase; 2.50A {Homo sapiens} PDB: 4b3g_A
Probab=96.32 E-value=0.0044 Score=66.26 Aligned_cols=58 Identities=29% Similarity=0.391 Sum_probs=35.6
Q ss_pred CCCccccccChhhHHHHHHHHHHHHhCHHHHHHhCCCCCceeEEeCCCCCcHHHHHHHHHHH---cCCCeEEeccc
Q 035603 189 PATFDTLAMASKKKEAIKKDLIKFTEGKEYYAKIGKAWKRGYLLFGPPGTGKSTMIAAMANC---LNYDVYDLELT 261 (431)
Q Consensus 189 p~~f~~l~g~~~~k~~i~~~l~~~~~~~~~~~~~g~~~~rg~LL~GPPGtGKTsla~aiA~~---l~~~i~~l~~~ 261 (431)
|..|-+=.+++.+++.|...+. . +.-.|++||||||||+++..+... -+..+..+..+
T Consensus 182 ~~~~~~~~LN~~Q~~AV~~al~----~-----------~~~~lI~GPPGTGKT~ti~~~I~~l~~~~~~ILv~a~T 242 (646)
T 4b3f_X 182 PLTFFNTCLDTSQKEAVLFALS----Q-----------KELAIIHGPPGTGKTTTVVEIILQAVKQGLKVLCCAPS 242 (646)
T ss_dssp CCCCSSTTCCHHHHHHHHHHHH----C-----------SSEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEESS
T ss_pred cccccCCCCCHHHHHHHHHHhc----C-----------CCceEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEcCc
Confidence 3344444578888887765431 1 124689999999999866555433 24555555444
No 215
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=96.31 E-value=0.0024 Score=63.13 Aligned_cols=39 Identities=18% Similarity=0.193 Sum_probs=30.0
Q ss_pred CCCCCceeEEeCCCCCcHHHHHHHHHHHc---CCCeEEeccc
Q 035603 223 GKAWKRGYLLFGPPGTGKSTMIAAMANCL---NYDVYDLELT 261 (431)
Q Consensus 223 g~~~~rg~LL~GPPGtGKTsla~aiA~~l---~~~i~~l~~~ 261 (431)
|++..+-++|+||||+|||+|+..+|..+ +..++.++..
T Consensus 57 Gl~~G~iv~I~G~pGsGKTtLal~la~~~~~~g~~vlyi~~E 98 (349)
T 2zr9_A 57 GLPRGRVIEIYGPESSGKTTVALHAVANAQAAGGIAAFIDAE 98 (349)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESS
T ss_pred CccCCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEECC
Confidence 56777779999999999999999988653 4555555543
No 216
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=96.24 E-value=0.003 Score=56.85 Aligned_cols=28 Identities=32% Similarity=0.492 Sum_probs=23.8
Q ss_pred ceeEEeCCCCCcHHHHHHHHHHHcCCCe
Q 035603 228 RGYLLFGPPGTGKSTMIAAMANCLNYDV 255 (431)
Q Consensus 228 rg~LL~GPPGtGKTsla~aiA~~l~~~i 255 (431)
|.++|.||+|+|||||++.+.....-.+
T Consensus 2 RpIVi~GPSG~GK~Tl~~~L~~~~~~~~ 29 (186)
T 1ex7_A 2 RPIVISGPSGTGKSTLLKKLFAEYPDSF 29 (186)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHHCTTTE
T ss_pred CEEEEECCCCCCHHHHHHHHHHhCCCCe
Confidence 5689999999999999999988765433
No 217
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=96.23 E-value=0.003 Score=61.18 Aligned_cols=53 Identities=23% Similarity=0.329 Sum_probs=35.2
Q ss_pred hhhHHHHHHHHHHHHhCHHHHHHhC--CCCCceeEEeCCCCCcHHHHHHHHHHHc
Q 035603 199 SKKKEAIKKDLIKFTEGKEYYAKIG--KAWKRGYLLFGPPGTGKSTMIAAMANCL 251 (431)
Q Consensus 199 ~~~k~~i~~~l~~~~~~~~~~~~~g--~~~~rg~LL~GPPGtGKTsla~aiA~~l 251 (431)
+.+++.+.+.+...+........+. +..+.-+.|.||+|+||||+++.||+.+
T Consensus 70 ~~~~~~~~~~l~~~l~~~~~~~~l~~~~~~g~vi~lvG~nGsGKTTll~~Lag~l 124 (302)
T 3b9q_A 70 SEIKDALKESVLEMLAKKNSKTELQLGFRKPAVIMIVGVNGGGKTTSLGKLAHRL 124 (302)
T ss_dssp HHHHHHHHHHHHHHHCC--CCCSCCCCSSSCEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCcccccccccccCCCcEEEEEcCCCCCHHHHHHHHHHHH
Confidence 4566667777766665422001122 3344567899999999999999999976
No 218
>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}
Probab=96.21 E-value=0.0035 Score=57.62 Aligned_cols=39 Identities=28% Similarity=0.198 Sum_probs=29.5
Q ss_pred CCCCCceeEEeCCCCCcHHHHHHHHHHH----cCCCeEEeccc
Q 035603 223 GKAWKRGYLLFGPPGTGKSTMIAAMANC----LNYDVYDLELT 261 (431)
Q Consensus 223 g~~~~rg~LL~GPPGtGKTsla~aiA~~----l~~~i~~l~~~ 261 (431)
|++...-++++|+||+|||+++..+|.. .+.+++.++..
T Consensus 26 Gl~~G~l~~i~G~pG~GKT~l~l~~~~~~~~~~~~~v~~~s~E 68 (251)
T 2zts_A 26 GFPEGTTVLLTGGTGTGKTTFAAQFIYKGAEEYGEPGVFVTLE 68 (251)
T ss_dssp SEETTCEEEEECCTTSSHHHHHHHHHHHHHHHHCCCEEEEESS
T ss_pred CCCCCeEEEEEeCCCCCHHHHHHHHHHHHHHhcCCCceeeccc
Confidence 5677777999999999999999876542 35666666544
No 219
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=96.21 E-value=0.0023 Score=57.83 Aligned_cols=32 Identities=22% Similarity=0.299 Sum_probs=26.5
Q ss_pred ceeEEeCCCCCcHHHHHHHHHHHcC--CCeEEec
Q 035603 228 RGYLLFGPPGTGKSTMIAAMANCLN--YDVYDLE 259 (431)
Q Consensus 228 rg~LL~GPPGtGKTsla~aiA~~l~--~~i~~l~ 259 (431)
.-+.|.||+|+||||+++.|++.++ +.++..+
T Consensus 7 ~~i~i~G~~GsGKSTl~~~l~~~~~~~i~~v~~d 40 (211)
T 3asz_A 7 FVIGIAGGTASGKTTLAQALARTLGERVALLPMD 40 (211)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHHGGGEEEEEGG
T ss_pred EEEEEECCCCCCHHHHHHHHHHHhCCCeEEEecC
Confidence 4577999999999999999999988 5555544
No 220
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=96.20 E-value=0.0027 Score=56.46 Aligned_cols=25 Identities=36% Similarity=0.580 Sum_probs=22.3
Q ss_pred ceeEEeCCCCCcHHHHHHHHHHHcC
Q 035603 228 RGYLLFGPPGTGKSTMIAAMANCLN 252 (431)
Q Consensus 228 rg~LL~GPPGtGKTsla~aiA~~l~ 252 (431)
+-+.|.||+|+||||+++.|++.+.
T Consensus 2 ~ii~l~GpsGaGKsTl~~~L~~~~~ 26 (186)
T 3a00_A 2 RPIVISGPSGTGKSTLLKKLFAEYP 26 (186)
T ss_dssp CCEEEESSSSSSHHHHHHHHHHHCG
T ss_pred CEEEEECCCCCCHHHHHHHHHhhCC
Confidence 4578999999999999999998764
No 221
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=96.19 E-value=0.0019 Score=61.31 Aligned_cols=29 Identities=24% Similarity=0.240 Sum_probs=24.3
Q ss_pred CCCCCceeEEeCCCCCcHHHHHHHHHHHc
Q 035603 223 GKAWKRGYLLFGPPGTGKSTMIAAMANCL 251 (431)
Q Consensus 223 g~~~~rg~LL~GPPGtGKTsla~aiA~~l 251 (431)
|++...-++|+||||+|||+|+..+|..+
T Consensus 26 gl~~G~i~~i~G~~GsGKTtl~~~l~~~~ 54 (279)
T 1nlf_A 26 NMVAGTVGALVSPGGAGKSMLALQLAAQI 54 (279)
T ss_dssp TEETTSEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CccCCCEEEEEcCCCCCHHHHHHHHHHHH
Confidence 45556678999999999999999998754
No 222
>3gmt_A Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucleotide biosynthesis, nucleotide-BIND transferase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B}
Probab=96.18 E-value=0.0022 Score=59.68 Aligned_cols=115 Identities=13% Similarity=0.115 Sum_probs=61.2
Q ss_pred eeEEeCCCCCcHHHHHHHHHHHcCCCeEEecc-c--CcCChHHHHHHHHHhhhc-cc-chhhHHHHHHHHhcCcccCCCC
Q 035603 229 GYLLFGPPGTGKSTMIAAMANCLNYDVYDLEL-T--SVENNNELRSLLVDISSK-KK-KSNVTLSGLLNCIGGLWSTCGG 303 (431)
Q Consensus 229 g~LL~GPPGtGKTsla~aiA~~l~~~i~~l~~-~--~~~~~~~l~~l~~~~~~~-~~-~~~~~~s~lL~~ldg~~~~~~~ 303 (431)
-+-|.||||+||||+++.||..++++.+..+- - .+.....+...+...... .. ....+..-+.+.|.... +..
T Consensus 10 ~~~~~G~pGsGKsT~a~~L~~~~g~~~is~gdllR~~~~~~t~lG~~i~~~~~~G~lvpdei~~~ll~~~l~~~~--~~~ 87 (230)
T 3gmt_A 10 RLILLGAPGAGKGTQANFIKEKFGIPQISTGDMLRAAVKAGTPLGVEAKTYMDEGKLVPDSLIIGLVKERLKEAD--CAN 87 (230)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHTCCEECHHHHHHHHHHTTCHHHHHHHHHHTTTCCCCHHHHHHHHHHHHHSGG--GTT
T ss_pred ceeeECCCCCCHHHHHHHHHHHhCCCeeechHHHHHhccCCChHHHHHHHHHhhccccccHHHHHHHHHHHhCcc--cCC
Confidence 35688999999999999999999988775421 0 011112222222221111 11 12233333444454321 222
Q ss_pred ceEEEEecCCCCCCChh--hhcc-CceeEEEEcCCCCHHHHHHHHHHh
Q 035603 304 ERIIVFTTNHVDKLDPA--LIRR-GRMDKHIEMPYCCFEAFKVLAKNY 348 (431)
Q Consensus 304 ~~ivI~TTN~~~~Ld~A--llRp-GRfd~~I~~~~p~~~~r~~i~~~~ 348 (431)
+.|+=+ .|..++.| |-.. ...|..|.+..|.......+....
T Consensus 88 g~ILDG---fPRt~~Qa~~L~~~~~~~d~VI~Ldvp~e~l~~Rl~~R~ 132 (230)
T 3gmt_A 88 GYLFDG---FPRTIAQADAMKEAGVAIDYVLEIDVPFSEIIERMSGRR 132 (230)
T ss_dssp CEEEES---CCCSHHHHHHHHHTTCCCSEEEEECCCHHHHHHHHHTEE
T ss_pred CeEecC---CCCcHHHHHHHHHhCCCccEEEEEeCCHHHHHHHHHcCC
Confidence 233311 33333322 2221 257889999999877777776654
No 223
>1x6v_B Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthethase 1; transferase, ATP sulfurylase, APS kinase, PAPS; HET: ADP; 1.75A {Homo sapiens} SCOP: b.122.1.3 c.26.1.5 c.37.1.4 PDB: 1xjq_B* 1xnj_B* 2qjf_A* 2ofx_A* 2ofw_A*
Probab=96.11 E-value=0.0042 Score=65.98 Aligned_cols=33 Identities=30% Similarity=0.440 Sum_probs=29.8
Q ss_pred CceeEEeCCCCCcHHHHHHHHHHHc---CCCeEEec
Q 035603 227 KRGYLLFGPPGTGKSTMIAAMANCL---NYDVYDLE 259 (431)
Q Consensus 227 ~rg~LL~GPPGtGKTsla~aiA~~l---~~~i~~l~ 259 (431)
+.-++|.|+||+||||+++++|..+ |++++.++
T Consensus 52 g~lIvLtGlsGSGKSTlAr~La~~L~~~G~~~v~lD 87 (630)
T 1x6v_B 52 GCTVWLTGLSGAGKTTVSMALEEYLVCHGIPCYTLD 87 (630)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEES
T ss_pred CCEEEEEeCCCCCHHHHHHHHHHHHHhcCCeEEEec
Confidence 4458899999999999999999999 99998886
No 224
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=96.10 E-value=0.0069 Score=61.01 Aligned_cols=50 Identities=22% Similarity=0.135 Sum_probs=33.9
Q ss_pred CCCCCceeEEeCCCCCcHHHHHHHHHHHc---------CCCeEEecccCcCChHHHHHH
Q 035603 223 GKAWKRGYLLFGPPGTGKSTMIAAMANCL---------NYDVYDLELTSVENNNELRSL 272 (431)
Q Consensus 223 g~~~~rg~LL~GPPGtGKTsla~aiA~~l---------~~~i~~l~~~~~~~~~~l~~l 272 (431)
|++...-++|+||||||||+|+..+|-.. +..++.++.........++.+
T Consensus 174 GI~~Gei~~I~G~sGsGKTTLl~~la~~~~~p~~~Gg~~~~viyid~E~~~~~~rl~~~ 232 (400)
T 3lda_A 174 GVETGSITELFGEFRTGKSQLCHTLAVTCQIPLDIGGGEGKCLYIDTEGTFRPVRLVSI 232 (400)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSSCCCHHHHHHH
T ss_pred CcCCCcEEEEEcCCCCChHHHHHHHHHHhccCcccCCCCCcEEEEeCCCccCHHHHHHH
Confidence 56667778999999999999999776433 233666666553334444443
No 225
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=96.10 E-value=0.0043 Score=54.16 Aligned_cols=28 Identities=25% Similarity=0.257 Sum_probs=24.2
Q ss_pred CCCCceeEEeCCCCCcHHHHHHHHHHHc
Q 035603 224 KAWKRGYLLFGPPGTGKSTMIAAMANCL 251 (431)
Q Consensus 224 ~~~~rg~LL~GPPGtGKTsla~aiA~~l 251 (431)
++...-+.|.||.|+|||||+++|++.+
T Consensus 30 i~~Ge~v~L~G~nGaGKTTLlr~l~g~l 57 (158)
T 1htw_A 30 TEKAIMVYLNGDLGAGKTTLTRGMLQGI 57 (158)
T ss_dssp CSSCEEEEEECSTTSSHHHHHHHHHHHT
T ss_pred cCCCCEEEEECCCCCCHHHHHHHHHHhC
Confidence 4445568899999999999999999987
No 226
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=96.09 E-value=0.003 Score=56.97 Aligned_cols=26 Identities=35% Similarity=0.548 Sum_probs=22.5
Q ss_pred CceeEEeCCCCCcHHHHHHHHHHHcC
Q 035603 227 KRGYLLFGPPGTGKSTMIAAMANCLN 252 (431)
Q Consensus 227 ~rg~LL~GPPGtGKTsla~aiA~~l~ 252 (431)
++-+.|.||+|+|||||++.|++.+.
T Consensus 4 g~~i~lvGpsGaGKSTLl~~L~~~~~ 29 (198)
T 1lvg_A 4 PRPVVLSGPSGAGKSTLLKKLFQEHS 29 (198)
T ss_dssp -CCEEEECCTTSSHHHHHHHHHHHHT
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhCc
Confidence 46789999999999999999998763
No 227
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=96.09 E-value=0.0038 Score=60.59 Aligned_cols=31 Identities=32% Similarity=0.516 Sum_probs=27.2
Q ss_pred hCCCCCceeEEeCCCCCcHHHHHHHHHHHcC
Q 035603 222 IGKAWKRGYLLFGPPGTGKSTMIAAMANCLN 252 (431)
Q Consensus 222 ~g~~~~rg~LL~GPPGtGKTsla~aiA~~l~ 252 (431)
+.++.+..+.|.||+|+|||||+++|++.+.
T Consensus 121 l~i~~Ge~vaIvGpsGsGKSTLl~lL~gl~~ 151 (305)
T 2v9p_A 121 KGIPKKNCLAFIGPPNTGKSMLCNSLIHFLG 151 (305)
T ss_dssp HTCTTCSEEEEECSSSSSHHHHHHHHHHHHT
T ss_pred EEecCCCEEEEECCCCCcHHHHHHHHhhhcC
Confidence 4567777899999999999999999999873
No 228
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=96.01 E-value=0.0034 Score=60.05 Aligned_cols=39 Identities=23% Similarity=0.139 Sum_probs=30.6
Q ss_pred hCCCCCceeEEeCCCCCcHHHHHHHHHHHc----CCCeEEecc
Q 035603 222 IGKAWKRGYLLFGPPGTGKSTMIAAMANCL----NYDVYDLEL 260 (431)
Q Consensus 222 ~g~~~~rg~LL~GPPGtGKTsla~aiA~~l----~~~i~~l~~ 260 (431)
.|++...-++|.||||+|||+|++.||..+ |..++.++.
T Consensus 30 ~~l~~G~~~~i~G~~G~GKTTl~~~ia~~~~~~~G~~v~~~~~ 72 (296)
T 1cr0_A 30 LGARGGEVIMVTSGSGMGKSTFVRQQALQWGTAMGKKVGLAML 72 (296)
T ss_dssp CSBCTTCEEEEEESTTSSHHHHHHHHHHHHHHTSCCCEEEEES
T ss_pred cCCCCCeEEEEEeCCCCCHHHHHHHHHHHHHHHcCCeEEEEeC
Confidence 366777788999999999999999999865 445655544
No 229
>3hdt_A Putative kinase; structura genomics, PSI-2, protein structure initiative, midwest CENT structural genomics, MCSG; 2.79A {Clostridium symbiosum atcc 14940}
Probab=96.01 E-value=0.0032 Score=58.31 Aligned_cols=32 Identities=19% Similarity=0.139 Sum_probs=28.6
Q ss_pred ceeEEeCCCCCcHHHHHHHHHHHcCCCeEEec
Q 035603 228 RGYLLFGPPGTGKSTMIAAMANCLNYDVYDLE 259 (431)
Q Consensus 228 rg~LL~GPPGtGKTsla~aiA~~l~~~i~~l~ 259 (431)
.-+.+.|++|||||++++.+|..+|+++++-+
T Consensus 15 ~iI~i~g~~gsGk~~i~~~la~~lg~~~~d~~ 46 (223)
T 3hdt_A 15 LIITIEREYGSGGRIVGKKLAEELGIHFYDDD 46 (223)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHHHTCEEECHH
T ss_pred eEEEEeCCCCCCHHHHHHHHHHHcCCcEEcHH
Confidence 45789999999999999999999999998743
No 230
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=95.98 E-value=0.0041 Score=61.76 Aligned_cols=53 Identities=23% Similarity=0.329 Sum_probs=35.0
Q ss_pred hhhHHHHHHHHHHHHhCHHHHHHhC--CCCCceeEEeCCCCCcHHHHHHHHHHHc
Q 035603 199 SKKKEAIKKDLIKFTEGKEYYAKIG--KAWKRGYLLFGPPGTGKSTMIAAMANCL 251 (431)
Q Consensus 199 ~~~k~~i~~~l~~~~~~~~~~~~~g--~~~~rg~LL~GPPGtGKTsla~aiA~~l 251 (431)
+.+++.+.+.+...+........+. +..+.-+.|.||.|+||||+++.||+.+
T Consensus 127 ~~~~~~l~~~l~~~l~~~~~~~~l~l~~~~g~vi~lvG~nGsGKTTll~~Lag~l 181 (359)
T 2og2_A 127 SEIKDALKESVLEMLAKKNSKTELQLGFRKPAVIMIVGVNGGGKTTSLGKLAHRL 181 (359)
T ss_dssp HHHHHHHHHHHHHHHCCC---CSCCCCSSSSEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCcccCCCcceecCCCeEEEEEcCCCChHHHHHHHHHhhc
Confidence 4556666666666665322101122 3345568899999999999999999976
No 231
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=95.96 E-value=0.0042 Score=56.91 Aligned_cols=27 Identities=30% Similarity=0.479 Sum_probs=23.1
Q ss_pred CCCceeEEeCCCCCcHHHHHHHHHHHc
Q 035603 225 AWKRGYLLFGPPGTGKSTMIAAMANCL 251 (431)
Q Consensus 225 ~~~rg~LL~GPPGtGKTsla~aiA~~l 251 (431)
+.+.-+.|.||+|+|||||++.|++.+
T Consensus 21 ~~G~~~~lvGpsGsGKSTLl~~L~g~~ 47 (218)
T 1z6g_A 21 NNIYPLVICGPSGVGKGTLIKKLLNEF 47 (218)
T ss_dssp -CCCCEEEECSTTSSHHHHHHHHHHHS
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhhC
Confidence 344568899999999999999999977
No 232
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=95.96 E-value=0.0045 Score=56.02 Aligned_cols=28 Identities=32% Similarity=0.465 Sum_probs=23.6
Q ss_pred CCCceeEEeCCCCCcHHHHHHHHHHHcC
Q 035603 225 AWKRGYLLFGPPGTGKSTMIAAMANCLN 252 (431)
Q Consensus 225 ~~~rg~LL~GPPGtGKTsla~aiA~~l~ 252 (431)
+.+.-+.|.||+|+|||||+++|++.+.
T Consensus 18 ~~Gei~~l~GpnGsGKSTLl~~l~gl~~ 45 (207)
T 1znw_A 18 AVGRVVVLSGPSAVGKSTVVRCLRERIP 45 (207)
T ss_dssp -CCCEEEEECSTTSSHHHHHHHHHHHST
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhhCC
Confidence 3445678999999999999999999874
No 233
>3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4}
Probab=95.95 E-value=0.0066 Score=59.16 Aligned_cols=39 Identities=18% Similarity=0.076 Sum_probs=28.1
Q ss_pred CCCCCceeEEeCCCCCcHHHHHHHHHHHc-----CCCeEEecccC
Q 035603 223 GKAWKRGYLLFGPPGTGKSTMIAAMANCL-----NYDVYDLELTS 262 (431)
Q Consensus 223 g~~~~rg~LL~GPPGtGKTsla~aiA~~l-----~~~i~~l~~~~ 262 (431)
|++.. -++++||||+|||+|+..++..+ +-.++.++...
T Consensus 25 Gl~~G-iteI~G~pGsGKTtL~Lq~~~~~~~~g~g~~vlyId~E~ 68 (333)
T 3io5_A 25 GMQSG-LLILAGPSKSFKSNFGLTMVSSYMRQYPDAVCLFYDSEF 68 (333)
T ss_dssp CBCSE-EEEEEESSSSSHHHHHHHHHHHHHHHCTTCEEEEEESSC
T ss_pred CCcCC-eEEEECCCCCCHHHHHHHHHHHHHhcCCCceEEEEeccc
Confidence 46655 47899999999999987665443 45566666544
No 234
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=95.94 E-value=0.0055 Score=55.62 Aligned_cols=26 Identities=23% Similarity=0.448 Sum_probs=23.1
Q ss_pred CceeEEeCCCCCcHHHHHHHHHHHcC
Q 035603 227 KRGYLLFGPPGTGKSTMIAAMANCLN 252 (431)
Q Consensus 227 ~rg~LL~GPPGtGKTsla~aiA~~l~ 252 (431)
++-+.|.||+|+|||||+++|+..+.
T Consensus 19 g~~ivl~GPSGaGKsTL~~~L~~~~~ 44 (197)
T 3ney_A 19 RKTLVLIGASGVGRSHIKNALLSQNP 44 (197)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHCT
T ss_pred CCEEEEECcCCCCHHHHHHHHHhhCC
Confidence 45678999999999999999998865
No 235
>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*
Probab=95.92 E-value=0.004 Score=62.64 Aligned_cols=33 Identities=24% Similarity=0.379 Sum_probs=28.5
Q ss_pred ceeEEeCCCCCcHHHHHHHHHHHcCCCeEEecc
Q 035603 228 RGYLLFGPPGTGKSTMIAAMANCLNYDVYDLEL 260 (431)
Q Consensus 228 rg~LL~GPPGtGKTsla~aiA~~l~~~i~~l~~ 260 (431)
+-+++.||+|+|||+|+..||..++..++..|.
T Consensus 3 ~~i~i~GptgsGKttla~~La~~~~~~iis~Ds 35 (409)
T 3eph_A 3 KVIVIAGTTGVGKSQLSIQLAQKFNGEVINSDS 35 (409)
T ss_dssp EEEEEEECSSSSHHHHHHHHHHHHTEEEEECCT
T ss_pred cEEEEECcchhhHHHHHHHHHHHCCCeEeecCc
Confidence 457899999999999999999999987776554
No 236
>4i1u_A Dephospho-COA kinase; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.05A {Burkholderia vietnamiensis} PDB: 4i1v_A*
Probab=95.90 E-value=0.017 Score=52.95 Aligned_cols=31 Identities=29% Similarity=0.343 Sum_probs=28.5
Q ss_pred eeEEeCCCCCcHHHHHHHHHHHcCCCeEEecc
Q 035603 229 GYLLFGPPGTGKSTMIAAMANCLNYDVYDLEL 260 (431)
Q Consensus 229 g~LL~GPPGtGKTsla~aiA~~l~~~i~~l~~ 260 (431)
.+-|+|.+|||||++++.++. +|+++++.|.
T Consensus 11 ~iglTGgigsGKStv~~~l~~-~g~~vidaD~ 41 (210)
T 4i1u_A 11 AIGLTGGIGSGKTTVADLFAA-RGASLVDTDL 41 (210)
T ss_dssp EEEEECCTTSCHHHHHHHHHH-TTCEEEEHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH-CCCcEEECcH
Confidence 577999999999999999998 9999999875
No 237
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=95.88 E-value=0.0067 Score=56.14 Aligned_cols=31 Identities=35% Similarity=0.456 Sum_probs=25.5
Q ss_pred ceeEEeCCCCCcHHHHHHHHHHHcC--CCeEEe
Q 035603 228 RGYLLFGPPGTGKSTMIAAMANCLN--YDVYDL 258 (431)
Q Consensus 228 rg~LL~GPPGtGKTsla~aiA~~l~--~~i~~l 258 (431)
.-+.|.||||+||||+++.|+..++ .+++..
T Consensus 27 ~~i~i~G~~GsGKsT~~~~l~~~l~~~~~~~~~ 59 (229)
T 4eaq_A 27 AFITFEGPEGSGKTTVINEVYHRLVKDYDVIMT 59 (229)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHHTTTSCEEEE
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHHhcCCCceee
Confidence 4567889999999999999999986 455543
No 238
>3aji_B S6C, proteasome (prosome, macropain) 26S subunit, ATPA; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dwz_B* 2dvw_B*
Probab=95.88 E-value=0.0039 Score=48.13 Aligned_cols=68 Identities=12% Similarity=0.043 Sum_probs=46.1
Q ss_pred CHHHHHHHHHHhhchhcchhHHHHHhHhccC-CCCHHHHHHHhcccC----CCCCHHHHHHHHHHHHHHHHHH
Q 035603 337 CFEAFKVLAKNYLEIESHELFHEIGSLLGET-DITPADVAENLMPKS----DEDDAGTCLKNLIEALKAAKEK 404 (431)
Q Consensus 337 ~~~~r~~i~~~~l~~~~~~~~~~i~~l~~~~-~~s~adI~~~l~~~~----~~~~~~~~l~~l~~~l~~~~~~ 404 (431)
+.++|.+|++.++.........++..++..+ |||+|||..+|..+. .........+++..++++.+..
T Consensus 2 d~~~R~~Il~~~l~~~~~~~~vdl~~la~~t~G~SGADi~~l~~eA~~~a~~~~~~~i~~~df~~Al~~~~ps 74 (83)
T 3aji_B 2 DRRQKRLIFSTITSKMNLSEEVDLEDYVARPDKISGADINSICQESGMLAVRENRYIVLAKDFEKAYKTVIKK 74 (83)
T ss_dssp CHHHHHHHHHHHHTTSCBCTTCCTHHHHTSSCCCCHHHHHHHHHHHHHGGGTSCCSSBCHHHHHHHHHHHCC-
T ss_pred CHHHHHHHHHHHhCCCCCCcccCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhccCCcCHHHHHHHHHHHccC
Confidence 6789999999999765433333466777744 999999998876421 2223345667888888776543
No 239
>2a5y_B CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis elegans} SCOP: a.4.5.80 a.77.1.3 c.37.1.20 PDB: 3lqq_A* 3lqr_A*
Probab=95.86 E-value=0.24 Score=51.58 Aligned_cols=167 Identities=13% Similarity=0.072 Sum_probs=85.2
Q ss_pred cChhhHHHHHHHHHHHHhCHHHHHHhCCCCCceeEEeCCCCCcHHHHHHHHHH----HcCCC---eEEecccCcC--C-h
Q 035603 197 MASKKKEAIKKDLIKFTEGKEYYAKIGKAWKRGYLLFGPPGTGKSTMIAAMAN----CLNYD---VYDLELTSVE--N-N 266 (431)
Q Consensus 197 g~~~~k~~i~~~l~~~~~~~~~~~~~g~~~~rg~LL~GPPGtGKTsla~aiA~----~l~~~---i~~l~~~~~~--~-~ 266 (431)
|-++.+++|.+.+..- +-...+.+.++|++|+|||+||+.+++ ...-. .+.++.+... + .
T Consensus 132 GR~~~~~~l~~~L~~~----------~~~~~~vv~I~G~gGvGKTtLA~~v~~~~~~~~~~~F~~~~wv~vs~~~~~~~~ 201 (549)
T 2a5y_B 132 IREYHVDRVIKKLDEM----------CDLDSFFLFLHGRAGSGKSVIASQALSKSDQLIGINYDSIVWLKDSGTAPKSTF 201 (549)
T ss_dssp CCHHHHHHHHHHHHHH----------TTSSSEEEEEECSTTSSHHHHHHHHHHHCSSTBTTTBSEEEEEECCCCSTTHHH
T ss_pred CchHHHHHHHHHHhcc----------cCCCceEEEEEcCCCCCHHHHHHHHHHhhhHHHhccCCcEEEEEECCCCCCCHH
Confidence 7777777777655321 112346788999999999999999997 23222 2334444321 1 1
Q ss_pred HHHHHHHHHhhhcc---------cc-hhhHHHHHHHH----------hcCcccCC------CCceEEEEecCCCCCCChh
Q 035603 267 NELRSLLVDISSKK---------KK-SNVTLSGLLNC----------IGGLWSTC------GGERIIVFTTNHVDKLDPA 320 (431)
Q Consensus 267 ~~l~~l~~~~~~~~---------~~-~~~~~s~lL~~----------ldg~~~~~------~~~~ivI~TTN~~~~Ld~A 320 (431)
.-+..++....... .. .......+.+. +|.+|... ..+.-||.||..... +
T Consensus 202 ~~~~~il~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~L~~~kr~LlVLDdv~~~~~~~~~~~~gs~ilvTTR~~~v---~ 278 (549)
T 2a5y_B 202 DLFTDILLMLKSEDDLLNFPSVEHVTSVVLKRMICNALIDRPNTLFVFDDVVQEETIRWAQELRLRCLVTTRDVEI---S 278 (549)
T ss_dssp HHHHHHHHHHTTTSCCTTCCCCTTCCHHHHHHHHHHHHTTSTTEEEEEEEECCHHHHHHHHHTTCEEEEEESBGGG---G
T ss_pred HHHHHHHHHHhcCcccccccccccccHHHHHHHHHHHHcCCCcEEEEEECCCCchhhcccccCCCEEEEEcCCHHH---H
Confidence 22233333322110 00 00111222222 23333211 023557777765321 1
Q ss_pred hhccCceeEEEEcCCCCHHHHHHHHHHhhchhc--chhHHHHHhHhccCCCCHHHHHHH
Q 035603 321 LIRRGRMDKHIEMPYCCFEAFKVLAKNYLEIES--HELFHEIGSLLGETDITPADVAEN 377 (431)
Q Consensus 321 llRpGRfd~~I~~~~p~~~~r~~i~~~~l~~~~--~~~~~~i~~l~~~~~~s~adI~~~ 377 (431)
. ..+..+..+.++..+.++-.+++..+..... ....+...++++..+-.|--|.-+
T Consensus 279 ~-~~~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~I~~~c~GlPLAl~~~ 336 (549)
T 2a5y_B 279 N-AASQTCEFIEVTSLEIDECYDFLEAYGMPMPVGEKEEDVLNKTIELSSGNPATLMMF 336 (549)
T ss_dssp G-GCCSCEEEEECCCCCHHHHHHHHHHTSCCCC--CHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred H-HcCCCCeEEECCCCCHHHHHHHHHHHhcCCCCchhHHHHHHHHHHHhCCChHHHHHH
Confidence 1 1112446789999999998899988743322 122223445555555667666533
No 240
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=95.85 E-value=0.0055 Score=62.31 Aligned_cols=62 Identities=19% Similarity=0.175 Sum_probs=39.1
Q ss_pred hhhHHHHHHHHHHHHhCHH-HHHHhCCCCCceeEEeCCCCCcHHHHHHHHHHHc---CCCeEEeccc
Q 035603 199 SKKKEAIKKDLIKFTEGKE-YYAKIGKAWKRGYLLFGPPGTGKSTMIAAMANCL---NYDVYDLELT 261 (431)
Q Consensus 199 ~~~k~~i~~~l~~~~~~~~-~~~~~g~~~~rg~LL~GPPGtGKTsla~aiA~~l---~~~i~~l~~~ 261 (431)
+.+.+.+.+.+...+.... .... -...++-+++.||||+||||++..||..+ |..+..+++.
T Consensus 69 ~~v~~~v~~eL~~~L~~~~~~~~~-~~~~~~vI~lvG~~GsGKTTt~~kLA~~l~~~G~kVllv~~D 134 (433)
T 3kl4_A 69 EWFISIVYDELSKLFGGDKEPNVN-PTKLPFIIMLVGVQGSGKTTTAGKLAYFYKKRGYKVGLVAAD 134 (433)
T ss_dssp HHHHHHHHHHHHHHHCSSSCCCCS-CCSSSEEEEECCCTTSCHHHHHHHHHHHHHHTTCCEEEEEEC
T ss_pred HHHHHHHHHHHHHhcCcccccccc-ccCCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEecC
Confidence 3455666666666655311 0000 01235678899999999999999999765 6666655544
No 241
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=95.78 E-value=0.0048 Score=59.90 Aligned_cols=59 Identities=17% Similarity=0.148 Sum_probs=38.1
Q ss_pred hHHHHHHHHHHHHhCHHHHHHhCCCCCceeEEeCCCCCcHHHHHHHHHHHc---CCCeEEecc
Q 035603 201 KKEAIKKDLIKFTEGKEYYAKIGKAWKRGYLLFGPPGTGKSTMIAAMANCL---NYDVYDLEL 260 (431)
Q Consensus 201 ~k~~i~~~l~~~~~~~~~~~~~g~~~~rg~LL~GPPGtGKTsla~aiA~~l---~~~i~~l~~ 260 (431)
+++.+.+.+...+.....+ .+....++-+++.||+|+||||++..||..+ +..+..++.
T Consensus 79 ~~~~~~~~l~~~l~~~~~~-~~~~~~~~vi~ivG~~GsGKTTl~~~LA~~l~~~g~kV~lv~~ 140 (306)
T 1vma_A 79 ALESLKEIILEILNFDTKL-NVPPEPPFVIMVVGVNGTGKTTSCGKLAKMFVDEGKSVVLAAA 140 (306)
T ss_dssp HHHHHHHHHHHHTCSCCCC-CCCSSSCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEE
T ss_pred HHHHHHHHHHHHhCCCCCC-cccCCCCeEEEEEcCCCChHHHHHHHHHHHHHhcCCEEEEEcc
Confidence 5666666666666432100 1112334568899999999999999999865 445555543
No 242
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=95.76 E-value=0.0063 Score=61.98 Aligned_cols=62 Identities=24% Similarity=0.287 Sum_probs=39.9
Q ss_pred hhhHHHHHHHHHHHHhCHHHHHHhCCCCCceeEEeCCCCCcHHHHHHHHHHHc---CCCeEEeccc
Q 035603 199 SKKKEAIKKDLIKFTEGKEYYAKIGKAWKRGYLLFGPPGTGKSTMIAAMANCL---NYDVYDLELT 261 (431)
Q Consensus 199 ~~~k~~i~~~l~~~~~~~~~~~~~g~~~~rg~LL~GPPGtGKTsla~aiA~~l---~~~i~~l~~~ 261 (431)
+.+++.+.+.+...+..+...... ...+.-+++.||||+||||++..||..+ |..+..+++.
T Consensus 73 ~~v~~~l~~eL~~~L~~~~~~~~~-~~~p~vIlivG~~G~GKTTt~~kLA~~l~~~G~kVllv~~D 137 (443)
T 3dm5_A 73 EHIIKIVYEELTKFLGTEAKPIEI-KEKPTILLMVGIQGSGKTTTVAKLARYFQKRGYKVGVVCSD 137 (443)
T ss_dssp HHHHHHHHHHHHHHTTSSCCCCCC-CSSSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEECC
T ss_pred HHHHHHHHHHHHHHhcCccccccc-CCCCeEEEEECcCCCCHHHHHHHHHHHHHHCCCeEEEEeCC
Confidence 455666677676666531100000 1135678999999999999999999865 5666555543
No 243
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=95.76 E-value=0.0053 Score=63.38 Aligned_cols=25 Identities=32% Similarity=0.428 Sum_probs=22.2
Q ss_pred CceeEEeCCCCCcHHHHHHHHHHHc
Q 035603 227 KRGYLLFGPPGTGKSTMIAAMANCL 251 (431)
Q Consensus 227 ~rg~LL~GPPGtGKTsla~aiA~~l 251 (431)
+.-++|.||+|+||||+++.||+.+
T Consensus 293 GeVI~LVGpNGSGKTTLl~~LAgll 317 (503)
T 2yhs_A 293 PFVILMVGVNGVGKTTTIGKLARQF 317 (503)
T ss_dssp TEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CeEEEEECCCcccHHHHHHHHHHHh
Confidence 4457899999999999999999876
No 244
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=95.75 E-value=0.0022 Score=57.90 Aligned_cols=24 Identities=21% Similarity=0.398 Sum_probs=21.8
Q ss_pred eeEEeCCCCCcHHHHHHHHHHHcC
Q 035603 229 GYLLFGPPGTGKSTMIAAMANCLN 252 (431)
Q Consensus 229 g~LL~GPPGtGKTsla~aiA~~l~ 252 (431)
-+.|.||||+||||+++.|+..++
T Consensus 2 ~I~i~G~~GsGKsTl~~~L~~~l~ 25 (214)
T 1gtv_A 2 LIAIEGVDGAGKRTLVEKLSGAFR 25 (214)
T ss_dssp EEEEEEEEEEEHHHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHH
Confidence 367999999999999999999885
No 245
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=95.75 E-value=0.011 Score=58.64 Aligned_cols=24 Identities=54% Similarity=0.758 Sum_probs=21.4
Q ss_pred eeEEeCCCCCcHHHHHHHHHHHcC
Q 035603 229 GYLLFGPPGTGKSTMIAAMANCLN 252 (431)
Q Consensus 229 g~LL~GPPGtGKTsla~aiA~~l~ 252 (431)
-+++.||+|+||||+.++|++.+.
T Consensus 125 ~i~I~GptGSGKTTlL~~l~g~~~ 148 (356)
T 3jvv_A 125 LVLVTGPTGSGKSTTLAAMLDYLN 148 (356)
T ss_dssp EEEEECSTTSCHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHhccc
Confidence 478999999999999999998763
No 246
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=95.69 E-value=0.0067 Score=55.86 Aligned_cols=29 Identities=31% Similarity=0.458 Sum_probs=24.1
Q ss_pred CCCCceeEEeCCCCCcHHHHHHHHHHHcC
Q 035603 224 KAWKRGYLLFGPPGTGKSTMIAAMANCLN 252 (431)
Q Consensus 224 ~~~~rg~LL~GPPGtGKTsla~aiA~~l~ 252 (431)
.+.+.-+.|.||+|+|||||+++|++.+.
T Consensus 13 ~~~G~ii~l~GpsGsGKSTLlk~L~g~~~ 41 (219)
T 1s96_A 13 MAQGTLYIVSAPSGAGKSSLIQALLKTQP 41 (219)
T ss_dssp --CCCEEEEECCTTSCHHHHHHHHHHHSC
T ss_pred CCCCcEEEEECCCCCCHHHHHHHHhccCC
Confidence 34556788999999999999999999875
No 247
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=95.67 E-value=0.012 Score=57.66 Aligned_cols=52 Identities=27% Similarity=0.281 Sum_probs=33.7
Q ss_pred hhHHHHHHHHHHHHhCHH---HH-HHhCCCCCceeEEeCCCCCcHHHHHHHHHHHc
Q 035603 200 KKKEAIKKDLIKFTEGKE---YY-AKIGKAWKRGYLLFGPPGTGKSTMIAAMANCL 251 (431)
Q Consensus 200 ~~k~~i~~~l~~~~~~~~---~~-~~~g~~~~rg~LL~GPPGtGKTsla~aiA~~l 251 (431)
.+++.+.+.+...+.... .. .....+.+.-+.|.||+|+||||+++.||+.+
T Consensus 98 ~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~~g~vi~lvG~nGaGKTTll~~Lag~l 153 (328)
T 3e70_C 98 IIEEAVKEAVSEILETSRRIDLIEEIRKAEKPYVIMFVGFNGSGKTTTIAKLANWL 153 (328)
T ss_dssp HHHHHHHHHHHHHSCCSSCCCHHHHHHSSCSSEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCccccchhhhcccCCCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 455556666665554321 00 01122345668899999999999999999876
No 248
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=95.65 E-value=0.0067 Score=56.40 Aligned_cols=27 Identities=22% Similarity=0.176 Sum_probs=23.4
Q ss_pred ceeEEeCCCCCcHHHHHHHHHHHcCCC
Q 035603 228 RGYLLFGPPGTGKSTMIAAMANCLNYD 254 (431)
Q Consensus 228 rg~LL~GPPGtGKTsla~aiA~~l~~~ 254 (431)
.-+-|.||+|+||||+++.|++.+|..
T Consensus 26 ~iigI~G~~GsGKSTl~k~L~~~lG~~ 52 (245)
T 2jeo_A 26 FLIGVSGGTASGKSTVCEKIMELLGQN 52 (245)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHHTGG
T ss_pred EEEEEECCCCCCHHHHHHHHHHHhchh
Confidence 346789999999999999999988754
No 249
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=95.61 E-value=0.0053 Score=53.88 Aligned_cols=23 Identities=30% Similarity=0.307 Sum_probs=19.1
Q ss_pred CCceeEEeCCCCCcHHHHHHHHH
Q 035603 226 WKRGYLLFGPPGTGKSTMIAAMA 248 (431)
Q Consensus 226 ~~rg~LL~GPPGtGKTsla~aiA 248 (431)
.+.-+.|.||+|+|||||++++.
T Consensus 8 ~gei~~l~G~nGsGKSTl~~~~~ 30 (171)
T 4gp7_A 8 ELSLVVLIGSSGSGKSTFAKKHF 30 (171)
T ss_dssp SSEEEEEECCTTSCHHHHHHHHS
T ss_pred CCEEEEEECCCCCCHHHHHHHHc
Confidence 34457899999999999999854
No 250
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=95.58 E-value=0.0086 Score=56.64 Aligned_cols=27 Identities=41% Similarity=0.541 Sum_probs=22.9
Q ss_pred CCCceeEEeCCCCCcHHHHHHHHHHHc
Q 035603 225 AWKRGYLLFGPPGTGKSTMIAAMANCL 251 (431)
Q Consensus 225 ~~~rg~LL~GPPGtGKTsla~aiA~~l 251 (431)
+...-++|.||+|+||||++++|++.+
T Consensus 23 ~~g~~v~i~Gp~GsGKSTll~~l~g~~ 49 (261)
T 2eyu_A 23 RKMGLILVTGPTGSGKSTTIASMIDYI 49 (261)
T ss_dssp CSSEEEEEECSTTCSHHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCccHHHHHHHHHHhC
Confidence 344557899999999999999999865
No 251
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=95.54 E-value=0.0081 Score=57.78 Aligned_cols=28 Identities=29% Similarity=0.262 Sum_probs=23.6
Q ss_pred CCceeEEeCCCCCcHHHHHHHHHHHcCC
Q 035603 226 WKRGYLLFGPPGTGKSTMIAAMANCLNY 253 (431)
Q Consensus 226 ~~rg~LL~GPPGtGKTsla~aiA~~l~~ 253 (431)
.+.-+.+.||+|+||||+++.|+..++.
T Consensus 30 ~~~ii~I~G~sGsGKSTla~~L~~~l~~ 57 (290)
T 1odf_A 30 CPLFIFFSGPQGSGKSFTSIQIYNHLME 57 (290)
T ss_dssp SCEEEEEECCTTSSHHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhhh
Confidence 3445779999999999999999998863
No 252
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=95.53 E-value=0.0068 Score=54.52 Aligned_cols=23 Identities=43% Similarity=0.788 Sum_probs=21.2
Q ss_pred eeEEeCCCCCcHHHHHHHHHHHc
Q 035603 229 GYLLFGPPGTGKSTMIAAMANCL 251 (431)
Q Consensus 229 g~LL~GPPGtGKTsla~aiA~~l 251 (431)
-+.|.||+|+||||+++.||+.+
T Consensus 3 ~i~i~G~nG~GKTTll~~l~g~~ 25 (189)
T 2i3b_A 3 HVFLTGPPGVGKTTLIHKASEVL 25 (189)
T ss_dssp CEEEESCCSSCHHHHHHHHHHHH
T ss_pred EEEEECCCCChHHHHHHHHHhhc
Confidence 47899999999999999999987
No 253
>3vlf_B 26S protease regulatory subunit 7 homolog; heat repeat, chaperone, chaperone-protein binding complex; HET: DNA; 3.80A {Saccharomyces cerevisiae} PDB: 4a3v_B*
Probab=95.53 E-value=0.0018 Score=50.92 Aligned_cols=66 Identities=11% Similarity=-0.063 Sum_probs=42.7
Q ss_pred CHHHHHHHHHHhhchhcchhHHHHHhHhcc-CCCCHHHHHHHhcccC----CCCCHHHHHHHHHHHHHHHH
Q 035603 337 CFEAFKVLAKNYLEIESHELFHEIGSLLGE-TDITPADVAENLMPKS----DEDDAGTCLKNLIEALKAAK 402 (431)
Q Consensus 337 ~~~~r~~i~~~~l~~~~~~~~~~i~~l~~~-~~~s~adI~~~l~~~~----~~~~~~~~l~~l~~~l~~~~ 402 (431)
+.++|++|++.++.........++..++.. .|||||||..+|..+. .........++|..++++..
T Consensus 2 d~~~R~~Il~~~~~~~~~~~dvdl~~lA~~t~G~SGADl~~l~~eAa~~a~r~~~~~i~~~df~~Al~~v~ 72 (88)
T 3vlf_B 2 DLEGRANIFRIHSKSMSVERGIRWELISRLCPNSTGAELRSVCTEAGMFAIRARRKVATEKDFLKAVDKVI 72 (88)
T ss_dssp CSSHHHHHHHHHHTTSCBCSCCCHHHHHHTCSSCCHHHHHHHHHHHHHHHHHHSCSSBCHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHHHCCCCCCCccCHHHHHHHcCCCcHHHHHHHHHHHHHHHHHhccccCCHHHHHHHHHHHh
Confidence 457899999999876544333356677764 4999999998886421 11112245567777776654
No 254
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=95.51 E-value=0.048 Score=45.96 Aligned_cols=22 Identities=23% Similarity=0.460 Sum_probs=19.9
Q ss_pred eeEEeCCCCCcHHHHHHHHHHH
Q 035603 229 GYLLFGPPGTGKSTMIAAMANC 250 (431)
Q Consensus 229 g~LL~GPPGtGKTsla~aiA~~ 250 (431)
-+++.|+||+|||+|+.++.+.
T Consensus 5 ~i~v~G~~~~GKSsli~~l~~~ 26 (167)
T 1kao_A 5 KVVVLGSGGVGKSALTVQFVTG 26 (167)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 5899999999999999999864
No 255
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=95.47 E-value=0.021 Score=57.75 Aligned_cols=50 Identities=30% Similarity=0.493 Sum_probs=35.0
Q ss_pred CCCccccccChhhHHHHHHHHHHHHhCHHHHHHhCCCCCce-eEEeCCCCCcHHHHHHHHHHHcCC
Q 035603 189 PATFDTLAMASKKKEAIKKDLIKFTEGKEYYAKIGKAWKRG-YLLFGPPGTGKSTMIAAMANCLNY 253 (431)
Q Consensus 189 p~~f~~l~g~~~~k~~i~~~l~~~~~~~~~~~~~g~~~~rg-~LL~GPPGtGKTsla~aiA~~l~~ 253 (431)
+.+++++....+.+..+.+ + +. .+.+ +++.||+|+||||+.++|++.+..
T Consensus 143 ~~~l~~Lg~~~~~~~~L~~-l---~~-----------~~ggii~I~GpnGSGKTTlL~allg~l~~ 193 (418)
T 1p9r_A 143 RLDLHSLGMTAHNHDNFRR-L---IK-----------RPHGIILVTGPTGSGKSTTLYAGLQELNS 193 (418)
T ss_dssp CCCGGGSCCCHHHHHHHHH-H---HT-----------SSSEEEEEECSTTSCHHHHHHHHHHHHCC
T ss_pred CCCHHHcCCCHHHHHHHHH-H---HH-----------hcCCeEEEECCCCCCHHHHHHHHHhhcCC
Confidence 4578888877655443322 2 11 1334 689999999999999999998753
No 256
>2axn_A 6-phosphofructo-2-kinase/fructose-2,6- biphosphatase 3 (6PF-2-K/FRU- 2,6-P2ASE brain/placenta-type...; bifunctional enzyme, EDTA complex; HET: F6P EDT ADP; 2.10A {Homo sapiens} PDB: 2dwo_A* 2dwp_A* 2i1v_B* 3qpu_A* 3qpv_A* 3qpw_A*
Probab=95.42 E-value=0.011 Score=61.51 Aligned_cols=28 Identities=21% Similarity=0.390 Sum_probs=24.4
Q ss_pred CceeEEeCCCCCcHHHHHHHHHHHcCCC
Q 035603 227 KRGYLLFGPPGTGKSTMIAAMANCLNYD 254 (431)
Q Consensus 227 ~rg~LL~GPPGtGKTsla~aiA~~l~~~ 254 (431)
+.-++|.|+||+|||++++.||..+++.
T Consensus 35 ~~lIvlvGlpGSGKSTia~~La~~L~~~ 62 (520)
T 2axn_A 35 PTVIVMVGLPARGKTYISKKLTRYLNWI 62 (520)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHHHT
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHhhc
Confidence 4568899999999999999999998544
No 257
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=95.36 E-value=0.0048 Score=56.70 Aligned_cols=26 Identities=27% Similarity=0.328 Sum_probs=15.9
Q ss_pred CceeEEeCCCCCcHHHHHHHHH-HHcC
Q 035603 227 KRGYLLFGPPGTGKSTMIAAMA-NCLN 252 (431)
Q Consensus 227 ~rg~LL~GPPGtGKTsla~aiA-~~l~ 252 (431)
+.-+.|.||+|+||||+++.|+ +.+.
T Consensus 27 G~ii~l~Gp~GsGKSTl~~~L~~~~~~ 53 (231)
T 3lnc_A 27 GVILVLSSPSGCGKTTVANKLLEKQKN 53 (231)
T ss_dssp CCEEEEECSCC----CHHHHHHC----
T ss_pred CCEEEEECCCCCCHHHHHHHHHhcCCC
Confidence 4457899999999999999999 8763
No 258
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=95.35 E-value=0.011 Score=58.87 Aligned_cols=29 Identities=41% Similarity=0.555 Sum_probs=24.0
Q ss_pred CCCCceeEEeCCCCCcHHHHHHHHHHHcC
Q 035603 224 KAWKRGYLLFGPPGTGKSTMIAAMANCLN 252 (431)
Q Consensus 224 ~~~~rg~LL~GPPGtGKTsla~aiA~~l~ 252 (431)
++.+.-+++.||+|+||||++++|++.+.
T Consensus 133 ~~~g~~i~ivG~~GsGKTTll~~l~~~~~ 161 (372)
T 2ewv_A 133 HRKMGLILVTGPTGSGKSTTIASMIDYIN 161 (372)
T ss_dssp TSSSEEEEEECSSSSSHHHHHHHHHHHHH
T ss_pred hcCCCEEEEECCCCCCHHHHHHHHHhhcC
Confidence 34455688999999999999999998753
No 259
>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}
Probab=95.31 E-value=0.027 Score=55.33 Aligned_cols=39 Identities=18% Similarity=0.169 Sum_probs=30.7
Q ss_pred CCCCCceeEEeCCCCCcHHHHHHHHHHH---cCCCeEEeccc
Q 035603 223 GKAWKRGYLLFGPPGTGKSTMIAAMANC---LNYDVYDLELT 261 (431)
Q Consensus 223 g~~~~rg~LL~GPPGtGKTsla~aiA~~---l~~~i~~l~~~ 261 (431)
|+....-++|.|+||+|||+|+..+|.. .+.++..+++.
T Consensus 42 Gl~~G~LiiIaG~pG~GKTt~al~ia~~~a~~g~~Vl~fSlE 83 (338)
T 4a1f_A 42 GFNKGSLVIIGARPSMGKTSLMMNMVLSALNDDRGVAVFSLE 83 (338)
T ss_dssp SBCTTCEEEEEECTTSCHHHHHHHHHHHHHHTTCEEEEEESS
T ss_pred CCCCCcEEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEEeCC
Confidence 6666667899999999999999999876 35666666553
No 260
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=95.31 E-value=0.021 Score=55.73 Aligned_cols=26 Identities=23% Similarity=0.147 Sum_probs=22.7
Q ss_pred CceeEEeCCCCCcHHHHHHHHHHHcC
Q 035603 227 KRGYLLFGPPGTGKSTMIAAMANCLN 252 (431)
Q Consensus 227 ~rg~LL~GPPGtGKTsla~aiA~~l~ 252 (431)
+.-+.|.||+||||||++++|+..++
T Consensus 92 p~iigI~GpsGSGKSTl~~~L~~ll~ 117 (321)
T 3tqc_A 92 PYIIGIAGSVAVGKSTTSRVLKALLS 117 (321)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHhc
Confidence 33567899999999999999999876
No 261
>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6
Probab=95.31 E-value=0.0043 Score=59.67 Aligned_cols=36 Identities=17% Similarity=0.206 Sum_probs=24.5
Q ss_pred ceeEEeCCCCCcHHHHHHHHHHHcC---CCeEEecccCc
Q 035603 228 RGYLLFGPPGTGKSTMIAAMANCLN---YDVYDLELTSV 263 (431)
Q Consensus 228 rg~LL~GPPGtGKTsla~aiA~~l~---~~i~~l~~~~~ 263 (431)
.-+.|.||+|+||||+++.++..++ ..+..++...+
T Consensus 6 ~iIgItG~sGSGKSTva~~L~~~lg~~~~~~~vI~~D~~ 44 (290)
T 1a7j_A 6 PIISVTGSSGAGTSTVKHTFDQIFRREGVKAVSIEGDAF 44 (290)
T ss_dssp CEEEEESCC---CCTHHHHHHHHHHHHTCCEEEEEGGGG
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHhhcCCCeeEeecchh
Confidence 3578999999999999999999876 34444554444
No 262
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=95.25 E-value=0.011 Score=57.45 Aligned_cols=39 Identities=21% Similarity=0.187 Sum_probs=30.5
Q ss_pred CCCCCceeEEeCCCCCcHHHHHHHHHHHc---CCCeEEeccc
Q 035603 223 GKAWKRGYLLFGPPGTGKSTMIAAMANCL---NYDVYDLELT 261 (431)
Q Consensus 223 g~~~~rg~LL~GPPGtGKTsla~aiA~~l---~~~i~~l~~~ 261 (431)
|++...-++|.|+||+|||+++..+|... +.+++.+++.
T Consensus 64 Gl~~G~l~li~G~pG~GKTtl~l~ia~~~a~~g~~vl~~slE 105 (315)
T 3bh0_A 64 GYKRRNFVLIAARPSMGKTAFALKQAKNMSDNDDVVNLHSLE 105 (315)
T ss_dssp SBCTTCEEEEECCTTSSHHHHHHHHHHHHHTTTCEEEEEESS
T ss_pred CCCCCcEEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEEECC
Confidence 67777789999999999999999998654 3455555544
No 263
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=95.24 E-value=0.0095 Score=58.14 Aligned_cols=61 Identities=28% Similarity=0.388 Sum_probs=38.3
Q ss_pred hHHHHHHHHHHHHhCHHH---HHHhC--CCCCceeEEeCCCCCcHHHHHHHHHHHc---CCCeEEeccc
Q 035603 201 KKEAIKKDLIKFTEGKEY---YAKIG--KAWKRGYLLFGPPGTGKSTMIAAMANCL---NYDVYDLELT 261 (431)
Q Consensus 201 ~k~~i~~~l~~~~~~~~~---~~~~g--~~~~rg~LL~GPPGtGKTsla~aiA~~l---~~~i~~l~~~ 261 (431)
+++.+.+.+...+..... ...+. ...++.+++.||+|+||||++..||..+ +..+..+++.
T Consensus 74 ~~~~~~~~l~~~l~~~~~~~~~~~l~~~~~~~~vI~ivG~~G~GKTT~~~~LA~~l~~~g~kVllid~D 142 (320)
T 1zu4_A 74 IKDALVESLYQAYTDNDWTNKKYRIDFKENRLNIFMLVGVNGTGKTTSLAKMANYYAELGYKVLIAAAD 142 (320)
T ss_dssp HHHHHHHHHHHHHHCSCC----CCCCCCTTSCEEEEEESSTTSSHHHHHHHHHHHHHHTTCCEEEEECC
T ss_pred HHHHHHHHHHHHhCcccccccccCccccCCCCeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEeCC
Confidence 555566666666543210 01111 2345678899999999999999999865 5566655543
No 264
>3v9p_A DTMP kinase, thymidylate kinase; ssgcid, STRU genomics, seattle structural genomics center for infectious transferase; 1.90A {Burkholderia thailandensis}
Probab=95.22 E-value=0.019 Score=53.21 Aligned_cols=32 Identities=22% Similarity=0.202 Sum_probs=22.8
Q ss_pred ceeEEeCCCCCcHHHHHHHHHHHc-------CCCeEEec
Q 035603 228 RGYLLFGPPGTGKSTMIAAMANCL-------NYDVYDLE 259 (431)
Q Consensus 228 rg~LL~GPPGtGKTsla~aiA~~l-------~~~i~~l~ 259 (431)
.-+.|.||+|+||||+++.++..+ |++++...
T Consensus 26 ~~I~~eG~~GsGKsT~~~~l~~~l~~~~~~~g~~v~~~r 64 (227)
T 3v9p_A 26 KFITFEGIDGAGKTTHLQWFCDRLQERLGPAGRHVVVTR 64 (227)
T ss_dssp CEEEEECCC---CHHHHHHHHHHHHHHHGGGTCCEEEEE
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHhhccccceeeeeec
Confidence 346788999999999999999987 66665443
No 265
>3e1s_A Exodeoxyribonuclease V, subunit RECD; alpha and beta protein, ATP-binding, nucleotide-binding, HYD; 2.20A {Deinococcus radiodurans} PDB: 3gp8_A 3gpl_A*
Probab=95.21 E-value=0.0095 Score=62.81 Aligned_cols=33 Identities=39% Similarity=0.385 Sum_probs=26.2
Q ss_pred ceeEEeCCCCCcHHHHHHHHHHHc---CCCeEEecc
Q 035603 228 RGYLLFGPPGTGKSTMIAAMANCL---NYDVYDLEL 260 (431)
Q Consensus 228 rg~LL~GPPGtGKTsla~aiA~~l---~~~i~~l~~ 260 (431)
+-+++.||||||||+++.+++..+ +..+..+..
T Consensus 205 ~~~~I~G~pGTGKTt~i~~l~~~l~~~g~~Vl~~Ap 240 (574)
T 3e1s_A 205 RLVVLTGGPGTGKSTTTKAVADLAESLGLEVGLCAP 240 (574)
T ss_dssp SEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEES
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEecC
Confidence 578899999999999999998754 566665543
No 266
>1c9k_A COBU, adenosylcobinamide kinase; alpha/beta structure rossmann fold P-loop, transferase; HET: 5GP; 2.20A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1cbu_A
Probab=95.21 E-value=0.013 Score=52.34 Aligned_cols=32 Identities=22% Similarity=0.224 Sum_probs=27.6
Q ss_pred eEEeCCCCCcHHHHHHHHHHHcCCCeEEecccC
Q 035603 230 YLLFGPPGTGKSTMIAAMANCLNYDVYDLELTS 262 (431)
Q Consensus 230 ~LL~GPPGtGKTsla~aiA~~l~~~i~~l~~~~ 262 (431)
+|++|++|+|||++|..+|.. +.+++.+....
T Consensus 2 ilV~Gg~~SGKS~~A~~la~~-~~~~~yiaT~~ 33 (180)
T 1c9k_A 2 ILVTGGARSGKSRHAEALIGD-APQVLYIATSQ 33 (180)
T ss_dssp EEEEECTTSSHHHHHHHHHCS-CSSEEEEECCC
T ss_pred EEEECCCCCcHHHHHHHHHhc-CCCeEEEecCC
Confidence 689999999999999999988 87877776554
No 267
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=95.20 E-value=0.012 Score=52.19 Aligned_cols=25 Identities=24% Similarity=0.272 Sum_probs=22.0
Q ss_pred CceeEEeCCCCCcHHHHHHHHHHHc
Q 035603 227 KRGYLLFGPPGTGKSTMIAAMANCL 251 (431)
Q Consensus 227 ~rg~LL~GPPGtGKTsla~aiA~~l 251 (431)
..-+.+.||+|+||||++.+++..+
T Consensus 6 ~~~i~i~G~sGsGKTTl~~~l~~~l 30 (174)
T 1np6_A 6 IPLLAFAAWSGTGKTTLLKKLIPAL 30 (174)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred ceEEEEEeCCCCCHHHHHHHHHHhc
Confidence 4568899999999999999999864
No 268
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=95.20 E-value=0.014 Score=52.00 Aligned_cols=31 Identities=19% Similarity=0.208 Sum_probs=22.5
Q ss_pred ceeEEeCCCCCcHHHHHHHHHHH---cCCCeEEe
Q 035603 228 RGYLLFGPPGTGKSTMIAAMANC---LNYDVYDL 258 (431)
Q Consensus 228 rg~LL~GPPGtGKTsla~aiA~~---l~~~i~~l 258 (431)
.-++++||||+|||+++..++.. .|..++.+
T Consensus 4 ~i~vi~G~~gsGKTT~ll~~~~~~~~~g~~v~~~ 37 (184)
T 2orw_A 4 KLTVITGPMYSGKTTELLSFVEIYKLGKKKVAVF 37 (184)
T ss_dssp CEEEEEESTTSSHHHHHHHHHHHHHHTTCEEEEE
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEE
Confidence 45789999999999998666654 35555443
No 269
>1m8p_A Sulfate adenylyltransferase; rossmann fold, phosphosulfate binding, T-state; HET: PPS; 2.60A {Penicillium chrysogenum} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1i2d_A*
Probab=95.20 E-value=0.011 Score=62.30 Aligned_cols=32 Identities=28% Similarity=0.223 Sum_probs=27.7
Q ss_pred ceeEEeCCCCCcHHHHHHHHHHHcC----CCeEEec
Q 035603 228 RGYLLFGPPGTGKSTMIAAMANCLN----YDVYDLE 259 (431)
Q Consensus 228 rg~LL~GPPGtGKTsla~aiA~~l~----~~i~~l~ 259 (431)
.-++|.|+||+||||++++++..++ .+++.++
T Consensus 397 ~~I~l~GlsGSGKSTiA~~La~~L~~~G~~~~~~lD 432 (573)
T 1m8p_A 397 FTIFLTGYMNSGKDAIARALQVTLNQQGGRSVSLLL 432 (573)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHHHHHCSSCEEEEE
T ss_pred eEEEeecCCCCCHHHHHHHHHHHhcccCCceEEEEC
Confidence 4578999999999999999999987 6777776
No 270
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=95.18 E-value=0.021 Score=50.05 Aligned_cols=27 Identities=15% Similarity=0.508 Sum_probs=22.8
Q ss_pred CCCceeEEeCCCCCcHHHHHHHHHHHc
Q 035603 225 AWKRGYLLFGPPGTGKSTMIAAMANCL 251 (431)
Q Consensus 225 ~~~rg~LL~GPPGtGKTsla~aiA~~l 251 (431)
....-+++.|++|+|||||+.++.+..
T Consensus 46 ~~~~~i~vvG~~g~GKSsll~~l~~~~ 72 (193)
T 2ged_A 46 SYQPSIIIAGPQNSGKTSLLTLLTTDS 72 (193)
T ss_dssp CCCCEEEEECCTTSSHHHHHHHHHHSS
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 344578999999999999999998753
No 271
>3tqf_A HPR(Ser) kinase; transferase, hydrolase; 2.80A {Coxiella burnetii}
Probab=95.17 E-value=0.0099 Score=52.83 Aligned_cols=29 Identities=28% Similarity=0.389 Sum_probs=24.6
Q ss_pred CceeEEeCCCCCcHHHHHHHHHHHcCCCeE
Q 035603 227 KRGYLLFGPPGTGKSTMIAAMANCLNYDVY 256 (431)
Q Consensus 227 ~rg~LL~GPPGtGKTsla~aiA~~l~~~i~ 256 (431)
.+|+||.||+|+|||++|.++... |..++
T Consensus 16 G~gvli~G~SGaGKStlal~L~~r-G~~lv 44 (181)
T 3tqf_A 16 KMGVLITGEANIGKSELSLALIDR-GHQLV 44 (181)
T ss_dssp TEEEEEEESSSSSHHHHHHHHHHT-TCEEE
T ss_pred CEEEEEEcCCCCCHHHHHHHHHHc-CCeEe
Confidence 579999999999999999999884 55444
No 272
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=95.15 E-value=0.011 Score=52.00 Aligned_cols=24 Identities=29% Similarity=0.333 Sum_probs=21.8
Q ss_pred eeEEeCCCCCcHHHHHHHHHHHcC
Q 035603 229 GYLLFGPPGTGKSTMIAAMANCLN 252 (431)
Q Consensus 229 g~LL~GPPGtGKTsla~aiA~~l~ 252 (431)
-.+|+||.|+|||++++||+..++
T Consensus 28 ~~~i~G~NGsGKStll~ai~~~l~ 51 (182)
T 3kta_A 28 FTAIVGANGSGKSNIGDAILFVLG 51 (182)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHTT
T ss_pred cEEEECCCCCCHHHHHHHHHHHHc
Confidence 457999999999999999999876
No 273
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=95.09 E-value=0.012 Score=56.87 Aligned_cols=25 Identities=24% Similarity=0.207 Sum_probs=22.3
Q ss_pred ceeEEeCCCCCcHHHHHHHHHHHcC
Q 035603 228 RGYLLFGPPGTGKSTMIAAMANCLN 252 (431)
Q Consensus 228 rg~LL~GPPGtGKTsla~aiA~~l~ 252 (431)
.-+-|.||+|+||||+++.|++.++
T Consensus 81 ~iigI~G~~GsGKSTl~~~L~~~l~ 105 (308)
T 1sq5_A 81 YIISIAGSVAVGKSTTARVLQALLS 105 (308)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHHHT
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHh
Confidence 4567899999999999999999876
No 274
>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1
Probab=95.09 E-value=0.013 Score=54.25 Aligned_cols=25 Identities=24% Similarity=0.328 Sum_probs=22.7
Q ss_pred ceeEEeCCCCCcHHHHHHHHHHHcC
Q 035603 228 RGYLLFGPPGTGKSTMIAAMANCLN 252 (431)
Q Consensus 228 rg~LL~GPPGtGKTsla~aiA~~l~ 252 (431)
+-+.+.|++|+||||+++.||..++
T Consensus 3 ~~i~~~G~~g~GKtt~~~~l~~~l~ 27 (241)
T 2ocp_A 3 RRLSIEGNIAVGKSTFVKLLTKTYP 27 (241)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHHCT
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHcC
Confidence 4578999999999999999999994
No 275
>2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV}
Probab=95.09 E-value=0.018 Score=53.41 Aligned_cols=34 Identities=21% Similarity=0.201 Sum_probs=26.9
Q ss_pred ceeEEeCCCCCcHHHHHHHHHHHc---CCCeEEeccc
Q 035603 228 RGYLLFGPPGTGKSTMIAAMANCL---NYDVYDLELT 261 (431)
Q Consensus 228 rg~LL~GPPGtGKTsla~aiA~~l---~~~i~~l~~~ 261 (431)
-.+++.||||+|||+++-.+|..+ |.++..++..
T Consensus 7 l~I~~~~kgGvGKTt~a~~la~~l~~~G~~V~v~d~D 43 (228)
T 2r8r_A 7 LKVFLGAAPGVGKTYAMLQAAHAQLRQGVRVMAGVVE 43 (228)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHHHHHTTCCEEEEECC
T ss_pred EEEEEECCCCCcHHHHHHHHHHHHHHCCCCEEEEEeC
Confidence 358899999999999999988764 7777655543
No 276
>1bif_A 6-phosphofructo-2-kinase/ fructose-2,6-bisphospha; transferase (phospho), phosphatase, hydrolase (phosp glycolysis, bifunctional enzyme; HET: AGS; 2.00A {Rattus norvegicus} SCOP: c.37.1.7 c.60.1.4 PDB: 3bif_A* 2bif_A* 1k6m_A* 1c80_A* 1c7z_A* 1c81_A* 1tip_A* 1fbt_A
Probab=95.08 E-value=0.0069 Score=62.15 Aligned_cols=30 Identities=20% Similarity=0.315 Sum_probs=25.4
Q ss_pred CceeEEeCCCCCcHHHHHHHHHHHcCCCeE
Q 035603 227 KRGYLLFGPPGTGKSTMIAAMANCLNYDVY 256 (431)
Q Consensus 227 ~rg~LL~GPPGtGKTsla~aiA~~l~~~i~ 256 (431)
+.-++|.|+||+|||++++.+|..++..++
T Consensus 39 ~~~IvlvGlpGsGKSTia~~La~~l~~~~~ 68 (469)
T 1bif_A 39 PTLIVMVGLPARGKTYISKKLTRYLNFIGV 68 (469)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHHHTTC
T ss_pred cEEEEEECCCCCCHHHHHHHHHHHHhccCC
Confidence 356899999999999999999998875443
No 277
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=95.02 E-value=0.015 Score=60.34 Aligned_cols=59 Identities=17% Similarity=0.216 Sum_probs=36.9
Q ss_pred hhHHHHHHHHHHHHhCHHHHHHhCC--CCCceeEEeCCCCCcHHHHHHHHHHHc---CCCeEEecc
Q 035603 200 KKKEAIKKDLIKFTEGKEYYAKIGK--AWKRGYLLFGPPGTGKSTMIAAMANCL---NYDVYDLEL 260 (431)
Q Consensus 200 ~~k~~i~~~l~~~~~~~~~~~~~g~--~~~rg~LL~GPPGtGKTsla~aiA~~l---~~~i~~l~~ 260 (431)
.+.+.+.+.+...+..... .+.. ..++.+++.|+||+||||++..||..+ |..+..+++
T Consensus 74 ~~~~~v~~eL~~ll~~~~~--~~~~~~~~~~vI~ivG~~GvGKTTl~~kLA~~l~~~G~kVllVd~ 137 (504)
T 2j37_W 74 MIQHAVFKELVKLVDPGVK--AWTPTKGKQNVIMFVGLQGSGKTTTCSKLAYYYQRKGWKTCLICA 137 (504)
T ss_dssp HHHHHHHHHHHHHHCCCCC--CCCCCSS--EEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEE
T ss_pred HHHHHHHHHHHHHhccccc--hhccccCCCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEec
Confidence 3555555556555543110 0111 224578899999999999999999766 666666554
No 278
>1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ...
Probab=95.02 E-value=0.0056 Score=57.56 Aligned_cols=29 Identities=21% Similarity=0.362 Sum_probs=24.1
Q ss_pred ceeEEeCCCCCcHHHHHHHHHHHc-CCCeE
Q 035603 228 RGYLLFGPPGTGKSTMIAAMANCL-NYDVY 256 (431)
Q Consensus 228 rg~LL~GPPGtGKTsla~aiA~~l-~~~i~ 256 (431)
.-|.|.|++|+||||+++.||..+ +..++
T Consensus 25 ~~I~ieG~~GsGKST~~~~L~~~l~~~~~i 54 (263)
T 1p5z_B 25 KKISIEGNIAAGKSTFVNILKQLCEDWEVV 54 (263)
T ss_dssp EEEEEECSTTSSHHHHHTTTGGGCTTEEEE
T ss_pred eEEEEECCCCCCHHHHHHHHHHhcCCCEEE
Confidence 457889999999999999999998 54333
No 279
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=94.97 E-value=0.016 Score=56.03 Aligned_cols=26 Identities=35% Similarity=0.496 Sum_probs=22.8
Q ss_pred CceeEEeCCCCCcHHHHHHHHHHHcC
Q 035603 227 KRGYLLFGPPGTGKSTMIAAMANCLN 252 (431)
Q Consensus 227 ~rg~LL~GPPGtGKTsla~aiA~~l~ 252 (431)
+.-+.|.||+|+||||+++.||+.+.
T Consensus 102 g~vi~lvG~nGsGKTTll~~Lagll~ 127 (304)
T 1rj9_A 102 GRVVLVVGVNGVGKTTTIAKLGRYYQ 127 (304)
T ss_dssp SSEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCcHHHHHHHHHHHHH
Confidence 45688999999999999999998764
No 280
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=94.90 E-value=0.015 Score=56.44 Aligned_cols=27 Identities=22% Similarity=0.080 Sum_probs=22.7
Q ss_pred CCceeEEeCCCCCcHHHHHHHHHHHcC
Q 035603 226 WKRGYLLFGPPGTGKSTMIAAMANCLN 252 (431)
Q Consensus 226 ~~rg~LL~GPPGtGKTsla~aiA~~l~ 252 (431)
.+.-+.|.||+|+|||||++.|++.+.
T Consensus 89 ~g~ivgI~G~sGsGKSTL~~~L~gll~ 115 (312)
T 3aez_A 89 VPFIIGVAGSVAVGKSTTARVLQALLA 115 (312)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred CCEEEEEECCCCchHHHHHHHHHhhcc
Confidence 344567899999999999999999774
No 281
>2gk6_A Regulator of nonsense transcripts 1; UPF1, helicase, NMD, hydrolase; HET: ADP; 2.40A {Homo sapiens} PDB: 2gjk_A* 2gk7_A 2xzo_A* 2xzp_A
Probab=94.85 E-value=0.014 Score=62.17 Aligned_cols=24 Identities=42% Similarity=0.607 Sum_probs=19.8
Q ss_pred ceeEEeCCCCCcHHHHHHHHHHHc
Q 035603 228 RGYLLFGPPGTGKSTMIAAMANCL 251 (431)
Q Consensus 228 rg~LL~GPPGtGKTsla~aiA~~l 251 (431)
...|+.||||||||+++..++..+
T Consensus 196 ~~~li~GppGTGKT~~~~~~i~~l 219 (624)
T 2gk6_A 196 PLSLIQGPPGTGKTVTSATIVYHL 219 (624)
T ss_dssp SEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCeEEECCCCCCHHHHHHHHHHHH
Confidence 357899999999999888776653
No 282
>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*
Probab=94.81 E-value=0.017 Score=52.92 Aligned_cols=32 Identities=34% Similarity=0.268 Sum_probs=25.5
Q ss_pred ceeEEeCCCCCcHHHHHHHHHHHcC---CCeEEec
Q 035603 228 RGYLLFGPPGTGKSTMIAAMANCLN---YDVYDLE 259 (431)
Q Consensus 228 rg~LL~GPPGtGKTsla~aiA~~l~---~~i~~l~ 259 (431)
.-+.|.||+|+||||+++.++..++ ++++...
T Consensus 7 ~~i~~eG~~gsGKsT~~~~l~~~l~~~~~~v~~~~ 41 (213)
T 4edh_A 7 LFVTLEGPEGAGKSTNRDYLAERLRERGIEVQLTR 41 (213)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHHHTTTCCEEEEE
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHHHHcCCCccccc
Confidence 4467889999999999999998774 5665443
No 283
>1g8f_A Sulfate adenylyltransferase; alpha-beta protein, beta-barrel, rossmann-fold, kinase fold; 1.95A {Saccharomyces cerevisiae} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1g8g_A* 1g8h_A* 1j70_A 1jec_A 1jed_A* 1jee_A*
Probab=94.80 E-value=0.012 Score=61.07 Aligned_cols=26 Identities=8% Similarity=-0.001 Sum_probs=23.8
Q ss_pred ceeEEeCCCCCcHHHHHHHHHHHcCC
Q 035603 228 RGYLLFGPPGTGKSTMIAAMANCLNY 253 (431)
Q Consensus 228 rg~LL~GPPGtGKTsla~aiA~~l~~ 253 (431)
..+.|.|++||||||+++++|..|+.
T Consensus 396 ~~I~l~GlsGsGKSTIa~~La~~L~~ 421 (511)
T 1g8f_A 396 FSIVLGNSLTVSREQLSIALLSTFLQ 421 (511)
T ss_dssp EEEEECTTCCSCHHHHHHHHHHHHTT
T ss_pred eEEEecccCCCCHHHHHHHHHHHHHH
Confidence 45789999999999999999999985
No 284
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=94.80 E-value=0.014 Score=60.70 Aligned_cols=27 Identities=22% Similarity=0.332 Sum_probs=23.8
Q ss_pred CceeEEeCCCCCcHHHHHHHHHHHcCC
Q 035603 227 KRGYLLFGPPGTGKSTMIAAMANCLNY 253 (431)
Q Consensus 227 ~rg~LL~GPPGtGKTsla~aiA~~l~~ 253 (431)
+..+++.||+|+||||++++|++.+..
T Consensus 260 g~~i~I~GptGSGKTTlL~aL~~~i~~ 286 (511)
T 2oap_1 260 KFSAIVVGETASGKTTTLNAIMMFIPP 286 (511)
T ss_dssp TCCEEEEESTTSSHHHHHHHHGGGSCT
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhCCC
Confidence 457999999999999999999998753
No 285
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=94.78 E-value=0.023 Score=57.79 Aligned_cols=63 Identities=14% Similarity=0.195 Sum_probs=39.1
Q ss_pred hhHHHHHHHHHHHHhCHHHHHHhCCCCCceeEEeCCCCCcHHHHHHHHHHHc----CCCeEEecccC
Q 035603 200 KKKEAIKKDLIKFTEGKEYYAKIGKAWKRGYLLFGPPGTGKSTMIAAMANCL----NYDVYDLELTS 262 (431)
Q Consensus 200 ~~k~~i~~~l~~~~~~~~~~~~~g~~~~rg~LL~GPPGtGKTsla~aiA~~l----~~~i~~l~~~~ 262 (431)
.+.+.+.+.+...+.....--......++.+++.|++|+||||++..||..+ |..+..+++..
T Consensus 73 ~~~~~~~~~l~~~l~~~~~~~~~~~~~~~vI~ivG~~GvGKTT~a~~LA~~l~~~~G~kVllvd~D~ 139 (433)
T 2xxa_A 73 EFVKIVRNELVAAMGEENQTLNLAAQPPAVVLMAGLQGAGKTTSVGKLGKFLREKHKKKVLVVSADV 139 (433)
T ss_dssp TTHHHHHHHHHHHHCSSSCCCCCCSSSSEEEEEECSTTSSHHHHHHHHHHHHHHTSCCCEEEEECCC
T ss_pred HHHHHHHHHHHHHhccccccccccCCCCeEEEEECCCCCCHHHHHHHHHHHHHHhcCCeEEEEecCC
Confidence 3455555656555543110000011235678899999999999999999765 67776666543
No 286
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=94.74 E-value=0.024 Score=52.31 Aligned_cols=30 Identities=17% Similarity=0.153 Sum_probs=23.1
Q ss_pred eeEEeCCCCCcHHHHHHHHHHHc---CCCeEEe
Q 035603 229 GYLLFGPPGTGKSTMIAAMANCL---NYDVYDL 258 (431)
Q Consensus 229 g~LL~GPPGtGKTsla~aiA~~l---~~~i~~l 258 (431)
-++++||||+|||+++..+|..+ |..++.+
T Consensus 14 i~litG~mGsGKTT~ll~~~~r~~~~g~kVli~ 46 (223)
T 2b8t_A 14 IEFITGPMFAGKTAELIRRLHRLEYADVKYLVF 46 (223)
T ss_dssp EEEEECSTTSCHHHHHHHHHHHHHHTTCCEEEE
T ss_pred EEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEE
Confidence 45778999999999988887654 5566555
No 287
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=94.73 E-value=0.017 Score=58.88 Aligned_cols=39 Identities=21% Similarity=0.256 Sum_probs=30.6
Q ss_pred CCCCCceeEEeCCCCCcHHHHHHHHHHHc----CCCeEEeccc
Q 035603 223 GKAWKRGYLLFGPPGTGKSTMIAAMANCL----NYDVYDLELT 261 (431)
Q Consensus 223 g~~~~rg~LL~GPPGtGKTsla~aiA~~l----~~~i~~l~~~ 261 (431)
|++.+.-++|.||||+|||+|+..+|..+ |.+++.+++.
T Consensus 199 Gl~~G~liiI~G~pG~GKTtl~l~ia~~~~~~~g~~Vl~~s~E 241 (454)
T 2r6a_A 199 GFQRSDLIIVAARPSVGKTAFALNIAQNVATKTNENVAIFSLE 241 (454)
T ss_dssp SBCTTCEEEEECCTTSCHHHHHHHHHHHHHHHSSCCEEEEESS
T ss_pred CCCCCCEEEEECCCCCCHHHHHHHHHHHHHHhCCCcEEEEECC
Confidence 56666778999999999999999988743 5567666654
No 288
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=94.71 E-value=0.013 Score=59.47 Aligned_cols=34 Identities=26% Similarity=0.340 Sum_probs=26.7
Q ss_pred CceeEEeCCCCCcHHHHHHHHHHHc---CCCeEEecc
Q 035603 227 KRGYLLFGPPGTGKSTMIAAMANCL---NYDVYDLEL 260 (431)
Q Consensus 227 ~rg~LL~GPPGtGKTsla~aiA~~l---~~~i~~l~~ 260 (431)
++-+++.||||+||||++..+|..+ |..+..+++
T Consensus 99 ~~vI~ivG~~GvGKTTla~~La~~l~~~G~kVllv~~ 135 (432)
T 2v3c_C 99 QNVILLVGIQGSGKTTTAAKLARYIQKRGLKPALIAA 135 (432)
T ss_dssp CCCEEEECCSSSSTTHHHHHHHHHHHHHHCCEEEECC
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEec
Confidence 3578999999999999999999876 355555443
No 289
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=94.68 E-value=0.017 Score=51.32 Aligned_cols=23 Identities=26% Similarity=0.488 Sum_probs=20.7
Q ss_pred ceeEEeCCCCCcHHHHHHHHHHH
Q 035603 228 RGYLLFGPPGTGKSTMIAAMANC 250 (431)
Q Consensus 228 rg~LL~GPPGtGKTsla~aiA~~ 250 (431)
.-+.|.||+|+|||||++++++.
T Consensus 6 ~kv~lvG~~g~GKSTLl~~l~~~ 28 (199)
T 2f9l_A 6 FKVVLIGDSGVGKSNLLSRFTRN 28 (199)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHS
T ss_pred EEEEEECcCCCCHHHHHHHHhcC
Confidence 35789999999999999999985
No 290
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=94.61 E-value=0.02 Score=55.24 Aligned_cols=60 Identities=20% Similarity=0.229 Sum_probs=38.0
Q ss_pred hhHHHHHHHHHHHHhCHHHHHH-h--CCCCCceeEEeCCCCCcHHHHHHHHHHHc---CCCeEEecccC
Q 035603 200 KKKEAIKKDLIKFTEGKEYYAK-I--GKAWKRGYLLFGPPGTGKSTMIAAMANCL---NYDVYDLELTS 262 (431)
Q Consensus 200 ~~k~~i~~~l~~~~~~~~~~~~-~--g~~~~rg~LL~GPPGtGKTsla~aiA~~l---~~~i~~l~~~~ 262 (431)
.+++.+.+.+...+.... .. + ... ++-+++.||+|+||||++..+|..+ +..+..++...
T Consensus 71 ~~~~~~~~~l~~~~~~~~--~~~i~~~~~-~~vi~i~G~~G~GKTT~~~~la~~~~~~g~~v~l~~~D~ 136 (297)
T 1j8m_F 71 WFIKIVYDELSNLFGGDK--EPKVIPDKI-PYVIMLVGVQGTGKTTTAGKLAYFYKKKGFKVGLVGADV 136 (297)
T ss_dssp HHHHHHHHHHHHHTTCSC--CCCCSCSSS-SEEEEEECSSCSSTTHHHHHHHHHHHHTTCCEEEEECCC
T ss_pred HHHHHHHHHHHHHhcccc--ccccccCCC-CeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEecCC
Confidence 345555566655554321 11 1 112 4567889999999999999999876 66666665543
No 291
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=94.58 E-value=0.015 Score=54.08 Aligned_cols=28 Identities=29% Similarity=0.330 Sum_probs=23.8
Q ss_pred CCceeEEeCCCCCcHHHHHHHHHHHcCC
Q 035603 226 WKRGYLLFGPPGTGKSTMIAAMANCLNY 253 (431)
Q Consensus 226 ~~rg~LL~GPPGtGKTsla~aiA~~l~~ 253 (431)
...-+.|.||.|+|||||.++|++.+..
T Consensus 30 ~Ge~~~iiG~nGsGKSTLl~~l~Gl~~p 57 (235)
T 3tif_A 30 EGEFVSIMGPSGSGKSTMLNIIGCLDKP 57 (235)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTTSSCC
T ss_pred CCCEEEEECCCCCcHHHHHHHHhcCCCC
Confidence 3456889999999999999999987754
No 292
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=94.58 E-value=0.014 Score=54.37 Aligned_cols=27 Identities=22% Similarity=0.297 Sum_probs=23.1
Q ss_pred CCCceeEEeCCCCCcHHHHHHHHHHHc
Q 035603 225 AWKRGYLLFGPPGTGKSTMIAAMANCL 251 (431)
Q Consensus 225 ~~~rg~LL~GPPGtGKTsla~aiA~~l 251 (431)
+...-+.|.||.|+|||||+++|++.+
T Consensus 29 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 55 (237)
T 2cbz_A 29 PEGALVAVVGQVGCGKSSLLSALLAEM 55 (237)
T ss_dssp CTTCEEEEECSTTSSHHHHHHHHTTCS
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 344568899999999999999999865
No 293
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=94.58 E-value=0.021 Score=50.50 Aligned_cols=32 Identities=16% Similarity=0.291 Sum_probs=25.6
Q ss_pred ceeEEeCCCCCcHHHHHHHHHHHc---CCCeEEec
Q 035603 228 RGYLLFGPPGTGKSTMIAAMANCL---NYDVYDLE 259 (431)
Q Consensus 228 rg~LL~GPPGtGKTsla~aiA~~l---~~~i~~l~ 259 (431)
+.+.+.||+|+|||+++..++..+ |+.+..+.
T Consensus 5 ~~i~i~G~sGsGKTTl~~~L~~~l~~~g~~v~~ik 39 (169)
T 1xjc_A 5 NVWQVVGYKHSGKTTLMEKWVAAAVREGWRVGTVK 39 (169)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred EEEEEECCCCCCHHHHHHHHHHhhHhcCCeeeEEE
Confidence 467899999999999999999875 45555544
No 294
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=94.57 E-value=0.02 Score=48.39 Aligned_cols=22 Identities=23% Similarity=0.489 Sum_probs=20.0
Q ss_pred eeEEeCCCCCcHHHHHHHHHHH
Q 035603 229 GYLLFGPPGTGKSTMIAAMANC 250 (431)
Q Consensus 229 g~LL~GPPGtGKTsla~aiA~~ 250 (431)
-+++.|++|+|||+|+.++++.
T Consensus 3 ki~v~G~~~~GKSsli~~l~~~ 24 (161)
T 2dyk_A 3 KVVIVGRPNVGKSSLFNRLLKK 24 (161)
T ss_dssp EEEEECCTTSSHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 4789999999999999999874
No 295
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=94.54 E-value=0.017 Score=51.20 Aligned_cols=23 Identities=26% Similarity=0.494 Sum_probs=20.7
Q ss_pred eeEEeCCCCCcHHHHHHHHHHHc
Q 035603 229 GYLLFGPPGTGKSTMIAAMANCL 251 (431)
Q Consensus 229 g~LL~GPPGtGKTsla~aiA~~l 251 (431)
-+.|.||+|+|||||++.+++..
T Consensus 31 kv~lvG~~g~GKSTLl~~l~~~~ 53 (191)
T 1oix_A 31 KVVLIGDSGVGKSNLLSRFTRNE 53 (191)
T ss_dssp EEEEEECTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHhcCC
Confidence 57899999999999999999854
No 296
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1
Probab=94.53 E-value=0.018 Score=56.92 Aligned_cols=28 Identities=21% Similarity=0.431 Sum_probs=24.5
Q ss_pred CceeEEeCCCCCcHHHHHHHHHHHcCCC
Q 035603 227 KRGYLLFGPPGTGKSTMIAAMANCLNYD 254 (431)
Q Consensus 227 ~rg~LL~GPPGtGKTsla~aiA~~l~~~ 254 (431)
..-+.|.||+|+|||||+++|++.+..+
T Consensus 170 g~k~~IvG~nGsGKSTLlk~L~gl~~~~ 197 (365)
T 1lw7_A 170 AKTVAILGGESSGKSVLVNKLAAVFNTT 197 (365)
T ss_dssp CEEEEEECCTTSHHHHHHHHHHHHTTCE
T ss_pred hCeEEEECCCCCCHHHHHHHHHHHhCCC
Confidence 4568899999999999999999987654
No 297
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}
Probab=94.51 E-value=0.02 Score=58.22 Aligned_cols=39 Identities=15% Similarity=0.083 Sum_probs=30.5
Q ss_pred CCCCCceeEEeCCCCCcHHHHHHHHHHHc----CCCeEEeccc
Q 035603 223 GKAWKRGYLLFGPPGTGKSTMIAAMANCL----NYDVYDLELT 261 (431)
Q Consensus 223 g~~~~rg~LL~GPPGtGKTsla~aiA~~l----~~~i~~l~~~ 261 (431)
|++.+.-+++.||||+|||+++..+|... |.+++.+++.
T Consensus 196 Gl~~G~l~ii~G~pg~GKT~lal~ia~~~a~~~g~~vl~~slE 238 (444)
T 2q6t_A 196 TLGPGSLNIIAARPAMGKTAFALTIAQNAALKEGVGVGIYSLE 238 (444)
T ss_dssp CCCTTCEEEEEECTTSCHHHHHHHHHHHHHHTTCCCEEEEESS
T ss_pred CcCCCcEEEEEeCCCCCHHHHHHHHHHHHHHhCCCeEEEEECC
Confidence 56666778999999999999999888643 5567666654
No 298
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=94.51 E-value=0.02 Score=55.12 Aligned_cols=59 Identities=19% Similarity=0.252 Sum_probs=37.2
Q ss_pred hhHHHHHHHHHHHHhCHHHHHHhC-CCCCceeEEeCCCCCcHHHHHHHHHHHc----CCCeEEeccc
Q 035603 200 KKKEAIKKDLIKFTEGKEYYAKIG-KAWKRGYLLFGPPGTGKSTMIAAMANCL----NYDVYDLELT 261 (431)
Q Consensus 200 ~~k~~i~~~l~~~~~~~~~~~~~g-~~~~rg~LL~GPPGtGKTsla~aiA~~l----~~~i~~l~~~ 261 (431)
.+++.+.+.+...+.... ... ...++-++|.||+|+||||++..||..+ |..+..++..
T Consensus 80 ~~~~~~~~~l~~~l~~~~---~~~~~~~g~vi~lvG~~GsGKTTl~~~LA~~l~~~~G~~V~lv~~D 143 (296)
T 2px0_A 80 NVVGKLQEILCDMLPSAD---KWQEPIHSKYIVLFGSTGAGKTTTLAKLAAISMLEKHKKIAFITTD 143 (296)
T ss_dssp THHHHHHHHHHTTSCCGG---GSCCCCCSSEEEEEESTTSSHHHHHHHHHHHHHHTTCCCEEEEECC
T ss_pred HHHHHHHHHHHHHhCCcc---cccccCCCcEEEEECCCCCCHHHHHHHHHHHHHHhcCCEEEEEecC
Confidence 455555555555443221 111 1235578899999999999999999755 4566655543
No 299
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=94.49 E-value=0.021 Score=48.49 Aligned_cols=23 Identities=26% Similarity=0.359 Sum_probs=20.6
Q ss_pred ceeEEeCCCCCcHHHHHHHHHHH
Q 035603 228 RGYLLFGPPGTGKSTMIAAMANC 250 (431)
Q Consensus 228 rg~LL~GPPGtGKTsla~aiA~~ 250 (431)
--+++.|+||+|||||+.++.+.
T Consensus 6 ~~i~v~G~~~~GKssl~~~l~~~ 28 (168)
T 1z2a_A 6 IKMVVVGNGAVGKSSMIQRYCKG 28 (168)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHC
T ss_pred EEEEEECcCCCCHHHHHHHHHcC
Confidence 45899999999999999999874
No 300
>3tmk_A Thymidylate kinase; phosphotransferase; HET: T5A; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 2tmk_A* 1tmk_A*
Probab=94.48 E-value=0.025 Score=51.91 Aligned_cols=31 Identities=26% Similarity=0.179 Sum_probs=25.8
Q ss_pred ceeEEeCCCCCcHHHHHHHHHHHcCCCeEEe
Q 035603 228 RGYLLFGPPGTGKSTMIAAMANCLNYDVYDL 258 (431)
Q Consensus 228 rg~LL~GPPGtGKTsla~aiA~~l~~~i~~l 258 (431)
.-+.|.||+|+||||+++.++..++.+...+
T Consensus 6 ~~i~~eG~~g~GKst~~~~l~~~l~~~~~~~ 36 (216)
T 3tmk_A 6 KLILIEGLDRTGKTTQCNILYKKLQPNCKLL 36 (216)
T ss_dssp CEEEEEECSSSSHHHHHHHHHHHHCSSEEEE
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhcccceEE
Confidence 4577889999999999999999998754333
No 301
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=94.45 E-value=0.015 Score=52.99 Aligned_cols=23 Identities=30% Similarity=0.377 Sum_probs=20.8
Q ss_pred ceeEEeCCCCCcHHHHHHHHHHH
Q 035603 228 RGYLLFGPPGTGKSTMIAAMANC 250 (431)
Q Consensus 228 rg~LL~GPPGtGKTsla~aiA~~ 250 (431)
.-+.|.||.|+|||||+++|++.
T Consensus 23 e~~~liG~nGsGKSTLl~~l~Gl 45 (208)
T 3b85_A 23 TIVFGLGPAGSGKTYLAMAKAVQ 45 (208)
T ss_dssp SEEEEECCTTSSTTHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHhcC
Confidence 45789999999999999999986
No 302
>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=94.44 E-value=0.025 Score=50.75 Aligned_cols=25 Identities=16% Similarity=0.480 Sum_probs=22.0
Q ss_pred CceeEEeCCCCCcHHHHHHHHHHHc
Q 035603 227 KRGYLLFGPPGTGKSTMIAAMANCL 251 (431)
Q Consensus 227 ~rg~LL~GPPGtGKTsla~aiA~~l 251 (431)
..-++|.|+||+|||+|+.++++..
T Consensus 12 ~~~i~~~G~~g~GKTsl~~~l~~~~ 36 (218)
T 1nrj_B 12 QPSIIIAGPQNSGKTSLLTLLTTDS 36 (218)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHSS
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCC
Confidence 3568999999999999999999854
No 303
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=94.41 E-value=0.012 Score=54.30 Aligned_cols=27 Identities=22% Similarity=0.231 Sum_probs=22.9
Q ss_pred CceeEEeCCCCCcHHHHHHHHHHHcCC
Q 035603 227 KRGYLLFGPPGTGKSTMIAAMANCLNY 253 (431)
Q Consensus 227 ~rg~LL~GPPGtGKTsla~aiA~~l~~ 253 (431)
..-+.|.||.|+|||||.++|++.+..
T Consensus 30 Ge~~~iiG~nGsGKSTLl~~l~Gl~~p 56 (224)
T 2pcj_A 30 GEFVSIIGASGSGKSTLLYILGLLDAP 56 (224)
T ss_dssp TCEEEEEECTTSCHHHHHHHHTTSSCC
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCCCC
Confidence 345789999999999999999987653
No 304
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=94.39 E-value=0.019 Score=53.62 Aligned_cols=26 Identities=31% Similarity=0.557 Sum_probs=22.7
Q ss_pred ceeEEeCCCCCcHHHHHHHHHHHcCC
Q 035603 228 RGYLLFGPPGTGKSTMIAAMANCLNY 253 (431)
Q Consensus 228 rg~LL~GPPGtGKTsla~aiA~~l~~ 253 (431)
.-+.|.||.|+|||||.++|++.+..
T Consensus 25 e~~~liG~nGsGKSTLl~~l~Gl~~p 50 (240)
T 2onk_A 25 DYCVLLGPTGAGKSVFLELIAGIVKP 50 (240)
T ss_dssp SEEEEECCTTSSHHHHHHHHHTSSCC
T ss_pred EEEEEECCCCCCHHHHHHHHhCCCCC
Confidence 56789999999999999999997643
No 305
>1q57_A DNA primase/helicase; dntpase, DNA replication, transferase; HET: DNA; 3.45A {Enterobacteria phage T7} SCOP: c.37.1.11 e.13.1.2
Probab=94.37 E-value=0.027 Score=58.12 Aligned_cols=40 Identities=18% Similarity=-0.007 Sum_probs=30.7
Q ss_pred CCCCCceeEEeCCCCCcHHHHHHHHHHHc----CCCeEEecccC
Q 035603 223 GKAWKRGYLLFGPPGTGKSTMIAAMANCL----NYDVYDLELTS 262 (431)
Q Consensus 223 g~~~~rg~LL~GPPGtGKTsla~aiA~~l----~~~i~~l~~~~ 262 (431)
|++...-++|.||||+|||+|+..+|... |.++..+++..
T Consensus 238 Gl~~G~l~li~G~pG~GKT~lal~~a~~~a~~~g~~vl~~s~E~ 281 (503)
T 1q57_A 238 GARGGEVIMVTSGSGMVMSTFVRQQALQWGTAMGKKVGLAMLEE 281 (503)
T ss_dssp CCCTTCEEEEEESSCHHHHHHHHHHHHHHTTTSCCCEEEEESSS
T ss_pred ccCCCeEEEEeecCCCCchHHHHHHHHHHHHhcCCcEEEEeccC
Confidence 56666678999999999999999988754 45666665533
No 306
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=94.35 E-value=0.017 Score=54.50 Aligned_cols=27 Identities=22% Similarity=0.287 Sum_probs=23.1
Q ss_pred CceeEEeCCCCCcHHHHHHHHHHHcCC
Q 035603 227 KRGYLLFGPPGTGKSTMIAAMANCLNY 253 (431)
Q Consensus 227 ~rg~LL~GPPGtGKTsla~aiA~~l~~ 253 (431)
..-+.|.||.|+|||||+++|++.+..
T Consensus 32 Ge~~~liG~nGsGKSTLlk~l~Gl~~p 58 (262)
T 1b0u_A 32 GDVISIIGSSGSGKSTFLRCINFLEKP 58 (262)
T ss_dssp TCEEEEECCTTSSHHHHHHHHTTSSCC
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCCCC
Confidence 445789999999999999999997654
No 307
>3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1}
Probab=94.32 E-value=0.03 Score=57.08 Aligned_cols=40 Identities=20% Similarity=0.171 Sum_probs=30.8
Q ss_pred CCCCCceeEEeCCCCCcHHHHHHHHHHHc---CCCeEEecccC
Q 035603 223 GKAWKRGYLLFGPPGTGKSTMIAAMANCL---NYDVYDLELTS 262 (431)
Q Consensus 223 g~~~~rg~LL~GPPGtGKTsla~aiA~~l---~~~i~~l~~~~ 262 (431)
|++.+.-+++.|+||+|||+++..+|... |.++..+++..
T Consensus 193 Gl~~G~liiIaG~pG~GKTtlal~ia~~~a~~g~~vl~fSlEm 235 (444)
T 3bgw_A 193 GYKRRNFVLIAARPSMGKTAFALKQAKNMSDNDDVVNLHSLEM 235 (444)
T ss_dssp SBCSSCEEEEEECSSSSHHHHHHHHHHHHHHTTCEEEEECSSS
T ss_pred CCCCCcEEEEEeCCCCChHHHHHHHHHHHHHcCCEEEEEECCC
Confidence 56666668999999999999999887654 56666665543
No 308
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=94.27 E-value=0.039 Score=64.74 Aligned_cols=40 Identities=18% Similarity=0.259 Sum_probs=33.0
Q ss_pred CCCCCceeEEeCCCCCcHHHHHHHHHHH---cCCCeEEecccC
Q 035603 223 GKAWKRGYLLFGPPGTGKSTMIAAMANC---LNYDVYDLELTS 262 (431)
Q Consensus 223 g~~~~rg~LL~GPPGtGKTsla~aiA~~---l~~~i~~l~~~~ 262 (431)
|++.++.++|+||||||||+||.++|.. .|..++.++...
T Consensus 30 Gi~~G~i~lI~G~pGsGKT~LAlqla~~~~~~G~~vlYI~te~ 72 (1706)
T 3cmw_A 30 GLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEH 72 (1706)
T ss_dssp SEETTSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEECTTS
T ss_pred CcCCCeEEEEECCCCCCHHHHHHHHHHHHhhCCCceEEEEecC
Confidence 6888889999999999999999998864 466677776654
No 309
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=94.25 E-value=0.025 Score=47.97 Aligned_cols=22 Identities=23% Similarity=0.481 Sum_probs=19.9
Q ss_pred eeEEeCCCCCcHHHHHHHHHHH
Q 035603 229 GYLLFGPPGTGKSTMIAAMANC 250 (431)
Q Consensus 229 g~LL~GPPGtGKTsla~aiA~~ 250 (431)
-+++.|++|+|||+|+.++.+.
T Consensus 5 ~i~v~G~~~~GKssli~~l~~~ 26 (170)
T 1ek0_A 5 KLVLLGEAAVGKSSIVLRFVSN 26 (170)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5899999999999999999864
No 310
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=94.23 E-value=0.018 Score=53.66 Aligned_cols=28 Identities=25% Similarity=0.355 Sum_probs=23.5
Q ss_pred CCCceeEEeCCCCCcHHHHHHHHHHHcC
Q 035603 225 AWKRGYLLFGPPGTGKSTMIAAMANCLN 252 (431)
Q Consensus 225 ~~~rg~LL~GPPGtGKTsla~aiA~~l~ 252 (431)
+...-+.|.||.|+|||||.++|++.+.
T Consensus 26 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~ 53 (243)
T 1mv5_A 26 QPNSIIAFAGPSGGGKSTIFSLLERFYQ 53 (243)
T ss_dssp CTTEEEEEECCTTSSHHHHHHHHTTSSC
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence 3345688999999999999999998764
No 311
>1w36_D RECD, exodeoxyribonuclease V alpha chain; recombination, helicase, hydrolase, DNA repair; HET: DNA; 3.1A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19 PDB: 3k70_D*
Probab=94.23 E-value=0.023 Score=60.26 Aligned_cols=25 Identities=40% Similarity=0.648 Sum_probs=20.7
Q ss_pred CceeEEeCCCCCcHHHHHHHHHHHc
Q 035603 227 KRGYLLFGPPGTGKSTMIAAMANCL 251 (431)
Q Consensus 227 ~rg~LL~GPPGtGKTsla~aiA~~l 251 (431)
.+-+++.||||||||+++.++...+
T Consensus 164 ~~~~vi~G~pGTGKTt~l~~ll~~l 188 (608)
T 1w36_D 164 RRISVISGGPGTGKTTTVAKLLAAL 188 (608)
T ss_dssp BSEEEEECCTTSTHHHHHHHHHHHH
T ss_pred CCCEEEEeCCCCCHHHHHHHHHHHH
Confidence 3578999999999999988776554
No 312
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=94.21 E-value=0.033 Score=54.87 Aligned_cols=32 Identities=38% Similarity=0.396 Sum_probs=25.5
Q ss_pred ceeEEeCCCCCcHHHHHHHHHHHc---CCCeEEec
Q 035603 228 RGYLLFGPPGTGKSTMIAAMANCL---NYDVYDLE 259 (431)
Q Consensus 228 rg~LL~GPPGtGKTsla~aiA~~l---~~~i~~l~ 259 (431)
.-+.|.|+||+||||++.+++..+ |..+..++
T Consensus 80 ~~I~i~G~~G~GKSTl~~~L~~~l~~~g~kV~vi~ 114 (355)
T 3p32_A 80 HRVGITGVPGVGKSTAIEALGMHLIERGHRVAVLA 114 (355)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEE
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHhCCCceEEEe
Confidence 468899999999999999999875 55554443
No 313
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=94.19 E-value=0.027 Score=47.64 Aligned_cols=23 Identities=22% Similarity=0.375 Sum_probs=20.5
Q ss_pred ceeEEeCCCCCcHHHHHHHHHHH
Q 035603 228 RGYLLFGPPGTGKSTMIAAMANC 250 (431)
Q Consensus 228 rg~LL~GPPGtGKTsla~aiA~~ 250 (431)
.-+++.|++|+|||+|+.++.+.
T Consensus 5 ~~i~v~G~~~~GKssl~~~l~~~ 27 (168)
T 1u8z_A 5 HKVIMVGSGGVGKSALTLQFMYD 27 (168)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHHhC
Confidence 45899999999999999999864
No 314
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=94.18 E-value=0.023 Score=47.80 Aligned_cols=22 Identities=23% Similarity=0.443 Sum_probs=20.0
Q ss_pred eeEEeCCCCCcHHHHHHHHHHH
Q 035603 229 GYLLFGPPGTGKSTMIAAMANC 250 (431)
Q Consensus 229 g~LL~GPPGtGKTsla~aiA~~ 250 (431)
-+++.|++|+|||+|+.++.+.
T Consensus 5 ~i~v~G~~~~GKssl~~~l~~~ 26 (166)
T 2ce2_X 5 KLVVVGAGGVGKSALTIQLIQN 26 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 4899999999999999999864
No 315
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=94.18 E-value=0.017 Score=53.39 Aligned_cols=27 Identities=19% Similarity=0.348 Sum_probs=23.3
Q ss_pred CCceeEEeCCCCCcHHHHHHHHHHHcC
Q 035603 226 WKRGYLLFGPPGTGKSTMIAAMANCLN 252 (431)
Q Consensus 226 ~~rg~LL~GPPGtGKTsla~aiA~~l~ 252 (431)
...-+.|.||.|+|||||.++|++.+.
T Consensus 33 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~~ 59 (229)
T 2pze_A 33 RGQLLAVAGSTGAGKTSLLMMIMGELE 59 (229)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHTTSSC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCc
Confidence 345688999999999999999999764
No 316
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=94.18 E-value=0.027 Score=47.93 Aligned_cols=23 Identities=26% Similarity=0.385 Sum_probs=20.5
Q ss_pred eeEEeCCCCCcHHHHHHHHHHHc
Q 035603 229 GYLLFGPPGTGKSTMIAAMANCL 251 (431)
Q Consensus 229 g~LL~GPPGtGKTsla~aiA~~l 251 (431)
-+++.|+||+|||+|+.++.+.-
T Consensus 8 ~i~v~G~~~~GKSsli~~l~~~~ 30 (170)
T 1z0j_A 8 KVCLLGDTGVGKSSIMWRFVEDS 30 (170)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHHcCC
Confidence 58999999999999999998753
No 317
>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}
Probab=94.17 E-value=0.018 Score=60.37 Aligned_cols=26 Identities=35% Similarity=0.386 Sum_probs=23.1
Q ss_pred CceeEEeCCCCCcHHHHHHHHHHHcC
Q 035603 227 KRGYLLFGPPGTGKSTMIAAMANCLN 252 (431)
Q Consensus 227 ~rg~LL~GPPGtGKTsla~aiA~~l~ 252 (431)
+..+.|.||+||||||++++||+.++
T Consensus 369 G~iI~LiG~sGSGKSTLar~La~~L~ 394 (552)
T 3cr8_A 369 GFTVFFTGLSGAGKSTLARALAARLM 394 (552)
T ss_dssp CEEEEEEESSCHHHHHHHHHHHHHHH
T ss_pred ceEEEEECCCCChHHHHHHHHHHhhc
Confidence 34578999999999999999999986
No 318
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=94.16 E-value=0.02 Score=54.17 Aligned_cols=28 Identities=25% Similarity=0.468 Sum_probs=23.6
Q ss_pred CCceeEEeCCCCCcHHHHHHHHHHHcCC
Q 035603 226 WKRGYLLFGPPGTGKSTMIAAMANCLNY 253 (431)
Q Consensus 226 ~~rg~LL~GPPGtGKTsla~aiA~~l~~ 253 (431)
...-+.|.||.|+|||||+++|++.+..
T Consensus 49 ~Gei~~liG~NGsGKSTLlk~l~Gl~~p 76 (263)
T 2olj_A 49 EGEVVVVIGPSGSGKSTFLRCLNLLEDF 76 (263)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHTTSSCC
T ss_pred CCCEEEEEcCCCCcHHHHHHHHHcCCCC
Confidence 3445789999999999999999987653
No 319
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*
Probab=94.14 E-value=0.027 Score=48.40 Aligned_cols=23 Identities=26% Similarity=0.447 Sum_probs=20.3
Q ss_pred ceeEEeCCCCCcHHHHHHHHHHH
Q 035603 228 RGYLLFGPPGTGKSTMIAAMANC 250 (431)
Q Consensus 228 rg~LL~GPPGtGKTsla~aiA~~ 250 (431)
.-+++.|+||+|||+|+.++.+.
T Consensus 8 ~~i~v~G~~~~GKSsli~~l~~~ 30 (177)
T 1wms_A 8 FKVILLGDGGVGKSSLMNRYVTN 30 (177)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHcC
Confidence 35899999999999999999863
No 320
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=94.13 E-value=0.017 Score=52.95 Aligned_cols=27 Identities=26% Similarity=0.469 Sum_probs=23.0
Q ss_pred CceeEEeCCCCCcHHHHHHHHHHHcCC
Q 035603 227 KRGYLLFGPPGTGKSTMIAAMANCLNY 253 (431)
Q Consensus 227 ~rg~LL~GPPGtGKTsla~aiA~~l~~ 253 (431)
..-+.|.||.|+|||||.++|++.+..
T Consensus 35 Ge~~~iiG~NGsGKSTLlk~l~Gl~~p 61 (214)
T 1sgw_A 35 GNVVNFHGPNGIGKTTLLKTISTYLKP 61 (214)
T ss_dssp TCCEEEECCTTSSHHHHHHHHTTSSCC
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCCCC
Confidence 345789999999999999999987653
No 321
>3lv8_A DTMP kinase, thymidylate kinase; structural genomics, in diseases, center for structural genomics of infectious DISE ATP-binding; HET: ADP TMP TYD; 1.80A {Vibrio cholerae o1 biovar eltor} PDB: 3n2i_A*
Probab=94.12 E-value=0.027 Score=52.48 Aligned_cols=26 Identities=31% Similarity=0.419 Sum_probs=22.3
Q ss_pred CceeEEeCCCCCcHHHHHHHHHHHcC
Q 035603 227 KRGYLLFGPPGTGKSTMIAAMANCLN 252 (431)
Q Consensus 227 ~rg~LL~GPPGtGKTsla~aiA~~l~ 252 (431)
+.-+.|.||||+||||+++.++..++
T Consensus 27 ~~~i~~eG~~GsGKsT~~~~l~~~l~ 52 (236)
T 3lv8_A 27 AKFIVIEGLEGAGKSTAIQVVVETLQ 52 (236)
T ss_dssp CCEEEEEESTTSCHHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 34578899999999999999998763
No 322
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=94.12 E-value=0.018 Score=54.24 Aligned_cols=27 Identities=37% Similarity=0.605 Sum_probs=23.1
Q ss_pred CceeEEeCCCCCcHHHHHHHHHHHcCC
Q 035603 227 KRGYLLFGPPGTGKSTMIAAMANCLNY 253 (431)
Q Consensus 227 ~rg~LL~GPPGtGKTsla~aiA~~l~~ 253 (431)
..-+.|.||.|+|||||.++|++.+..
T Consensus 33 Ge~~~liG~nGsGKSTLlk~l~Gl~~p 59 (257)
T 1g6h_A 33 GDVTLIIGPNGSGKSTLINVITGFLKA 59 (257)
T ss_dssp TCEEEEECSTTSSHHHHHHHHTTSSCC
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCCC
Confidence 345789999999999999999987654
No 323
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=94.12 E-value=0.023 Score=53.83 Aligned_cols=26 Identities=35% Similarity=0.418 Sum_probs=22.4
Q ss_pred CCceeEEeCCCCCcHHHHHHHHHHHc
Q 035603 226 WKRGYLLFGPPGTGKSTMIAAMANCL 251 (431)
Q Consensus 226 ~~rg~LL~GPPGtGKTsla~aiA~~l 251 (431)
...-+.|.||.|+|||||+++|++.+
T Consensus 45 ~Ge~~~l~G~NGsGKSTLlk~l~Gl~ 70 (267)
T 2zu0_C 45 PGEVHAIMGPNGSGKSTLSATLAGRE 70 (267)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHTCT
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 34467899999999999999999963
No 324
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=94.12 E-value=0.02 Score=54.09 Aligned_cols=28 Identities=25% Similarity=0.330 Sum_probs=23.7
Q ss_pred CCCceeEEeCCCCCcHHHHHHHHHHHcC
Q 035603 225 AWKRGYLLFGPPGTGKSTMIAAMANCLN 252 (431)
Q Consensus 225 ~~~rg~LL~GPPGtGKTsla~aiA~~l~ 252 (431)
+...-+.|.||.|+|||||+++|++.+.
T Consensus 44 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~ 71 (260)
T 2ghi_A 44 PSGTTCALVGHTGSGKSTIAKLLYRFYD 71 (260)
T ss_dssp CTTCEEEEECSTTSSHHHHHHHHTTSSC
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhccCC
Confidence 3445688999999999999999998764
No 325
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=94.11 E-value=0.026 Score=48.46 Aligned_cols=22 Identities=36% Similarity=0.560 Sum_probs=19.8
Q ss_pred eeEEeCCCCCcHHHHHHHHHHH
Q 035603 229 GYLLFGPPGTGKSTMIAAMANC 250 (431)
Q Consensus 229 g~LL~GPPGtGKTsla~aiA~~ 250 (431)
-+.|.|+||+|||||+.++++.
T Consensus 5 ~v~lvG~~gvGKStL~~~l~~~ 26 (165)
T 2wji_A 5 EIALIGNPNVGKSTIFNALTGE 26 (165)
T ss_dssp EEEEECSTTSSHHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 4789999999999999999863
No 326
>2wjy_A Regulator of nonsense transcripts 1; nonsense mediated decay, zinc-finger, ATP-binding, metal-BIN UPF2, UPF1, helicase, hydrolase; 2.50A {Homo sapiens} PDB: 2wjv_A 2iyk_A
Probab=94.10 E-value=0.025 Score=61.90 Aligned_cols=24 Identities=42% Similarity=0.607 Sum_probs=19.7
Q ss_pred ceeEEeCCCCCcHHHHHHHHHHHc
Q 035603 228 RGYLLFGPPGTGKSTMIAAMANCL 251 (431)
Q Consensus 228 rg~LL~GPPGtGKTsla~aiA~~l 251 (431)
.-.++.||||||||+++..++..+
T Consensus 372 ~~~lI~GppGTGKT~ti~~~i~~l 395 (800)
T 2wjy_A 372 PLSLIQGPPGTGKTVTSATIVYHL 395 (800)
T ss_dssp SEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CeEEEEcCCCCCHHHHHHHHHHHH
Confidence 357899999999999888776653
No 327
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=94.09 E-value=0.021 Score=54.20 Aligned_cols=29 Identities=34% Similarity=0.375 Sum_probs=24.2
Q ss_pred CCCceeEEeCCCCCcHHHHHHHHHHHcCC
Q 035603 225 AWKRGYLLFGPPGTGKSTMIAAMANCLNY 253 (431)
Q Consensus 225 ~~~rg~LL~GPPGtGKTsla~aiA~~l~~ 253 (431)
+...-+.|.||.|+|||||+++|++.+..
T Consensus 43 ~~Ge~~~i~G~nGsGKSTLlk~l~Gl~~p 71 (271)
T 2ixe_A 43 YPGKVTALVGPNGSGKSTVAALLQNLYQP 71 (271)
T ss_dssp CTTCEEEEECSTTSSHHHHHHHHTTSSCC
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhcCCCC
Confidence 33456889999999999999999997653
No 328
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Probab=94.08 E-value=0.029 Score=47.81 Aligned_cols=23 Identities=17% Similarity=0.309 Sum_probs=20.6
Q ss_pred ceeEEeCCCCCcHHHHHHHHHHH
Q 035603 228 RGYLLFGPPGTGKSTMIAAMANC 250 (431)
Q Consensus 228 rg~LL~GPPGtGKTsla~aiA~~ 250 (431)
--+++.|+||+|||+|+.++.+.
T Consensus 7 ~~i~v~G~~~~GKssli~~l~~~ 29 (170)
T 1z08_A 7 FKVVLLGEGCVGKTSLVLRYCEN 29 (170)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHC
T ss_pred eEEEEECcCCCCHHHHHHHHHcC
Confidence 45899999999999999999864
No 329
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=94.06 E-value=0.023 Score=53.93 Aligned_cols=24 Identities=25% Similarity=0.484 Sum_probs=21.2
Q ss_pred eeEEeCCCCCcHHHHHHHHHHHcC
Q 035603 229 GYLLFGPPGTGKSTMIAAMANCLN 252 (431)
Q Consensus 229 g~LL~GPPGtGKTsla~aiA~~l~ 252 (431)
.+.|.||+|+|||||+++|++...
T Consensus 4 ~v~lvG~nGaGKSTLln~L~g~~~ 27 (270)
T 3sop_A 4 NIMVVGQSGLGKSTLVNTLFKSQV 27 (270)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHhCCCC
Confidence 467999999999999999998653
No 330
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Probab=94.03 E-value=0.029 Score=48.25 Aligned_cols=23 Identities=22% Similarity=0.483 Sum_probs=20.6
Q ss_pred ceeEEeCCCCCcHHHHHHHHHHH
Q 035603 228 RGYLLFGPPGTGKSTMIAAMANC 250 (431)
Q Consensus 228 rg~LL~GPPGtGKTsla~aiA~~ 250 (431)
.-+++.|++|+|||+|+.++.+.
T Consensus 9 ~~i~v~G~~~~GKSsli~~l~~~ 31 (182)
T 1ky3_A 9 LKVIILGDSGVGKTSLMHRYVND 31 (182)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHHhC
Confidence 46899999999999999999864
No 331
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=94.03 E-value=0.028 Score=48.15 Aligned_cols=22 Identities=32% Similarity=0.653 Sum_probs=19.7
Q ss_pred ceeEEeCCCCCcHHHHHHHHHH
Q 035603 228 RGYLLFGPPGTGKSTMIAAMAN 249 (431)
Q Consensus 228 rg~LL~GPPGtGKTsla~aiA~ 249 (431)
--+++.|+||+|||+|+.++.+
T Consensus 5 ~ki~i~G~~~vGKSsl~~~l~~ 26 (175)
T 2nzj_A 5 YRVVLLGDPGVGKTSLASLFAG 26 (175)
T ss_dssp EEEEEECCTTSSHHHHHHHHHC
T ss_pred EEEEEECCCCccHHHHHHHHhc
Confidence 3589999999999999999975
No 332
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A
Probab=94.02 E-value=0.026 Score=47.97 Aligned_cols=23 Identities=30% Similarity=0.499 Sum_probs=20.2
Q ss_pred ceeEEeCCCCCcHHHHHHHHHHH
Q 035603 228 RGYLLFGPPGTGKSTMIAAMANC 250 (431)
Q Consensus 228 rg~LL~GPPGtGKTsla~aiA~~ 250 (431)
.-+++.|+||+|||+|+.++.+.
T Consensus 4 ~~i~v~G~~~~GKssli~~l~~~ 26 (170)
T 1g16_A 4 MKILLIGDSGVGKSCLLVRFVED 26 (170)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHC
T ss_pred eEEEEECcCCCCHHHHHHHHHhC
Confidence 35899999999999999999863
No 333
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=94.00 E-value=0.022 Score=59.23 Aligned_cols=29 Identities=24% Similarity=0.292 Sum_probs=25.2
Q ss_pred CCCCCceeEEeCCCCCcHHHHHHHHHHHc
Q 035603 223 GKAWKRGYLLFGPPGTGKSTMIAAMANCL 251 (431)
Q Consensus 223 g~~~~rg~LL~GPPGtGKTsla~aiA~~l 251 (431)
|++...-++|.||||+|||+|++.+|...
T Consensus 277 ~i~~G~i~~i~G~~GsGKSTLl~~l~g~~ 305 (525)
T 1tf7_A 277 GFFKDSIILATGATGTGKTLLVSRFVENA 305 (525)
T ss_dssp SEESSCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CCCCCcEEEEEeCCCCCHHHHHHHHHHHH
Confidence 56666778999999999999999999764
No 334
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*
Probab=93.98 E-value=0.031 Score=47.41 Aligned_cols=22 Identities=23% Similarity=0.465 Sum_probs=20.0
Q ss_pred ceeEEeCCCCCcHHHHHHHHHH
Q 035603 228 RGYLLFGPPGTGKSTMIAAMAN 249 (431)
Q Consensus 228 rg~LL~GPPGtGKTsla~aiA~ 249 (431)
--+++.|+||+|||+|+.++.+
T Consensus 7 ~~i~v~G~~~~GKssli~~l~~ 28 (170)
T 1r2q_A 7 FKLVLLGESAVGKSSLVLRFVK 28 (170)
T ss_dssp EEEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHc
Confidence 3589999999999999999986
No 335
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=93.97 E-value=0.02 Score=53.63 Aligned_cols=27 Identities=22% Similarity=0.236 Sum_probs=23.3
Q ss_pred CceeEEeCCCCCcHHHHHHHHHHHcCC
Q 035603 227 KRGYLLFGPPGTGKSTMIAAMANCLNY 253 (431)
Q Consensus 227 ~rg~LL~GPPGtGKTsla~aiA~~l~~ 253 (431)
..-+.|.||.|+|||||+++|++.+..
T Consensus 35 Ge~~~i~G~nGsGKSTLl~~l~Gl~~p 61 (247)
T 2ff7_A 35 GEVIGIVGRSGSGKSTLTKLIQRFYIP 61 (247)
T ss_dssp TCEEEEECSTTSSHHHHHHHHTTSSCC
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCCCC
Confidence 446789999999999999999997654
No 336
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=93.97 E-value=0.024 Score=56.18 Aligned_cols=27 Identities=22% Similarity=0.407 Sum_probs=22.8
Q ss_pred CceeEEeCCCCCcHHHHHHHHHHHcCC
Q 035603 227 KRGYLLFGPPGTGKSTMIAAMANCLNY 253 (431)
Q Consensus 227 ~rg~LL~GPPGtGKTsla~aiA~~l~~ 253 (431)
..-+.|.||.|||||||.++||+.+..
T Consensus 30 Ge~~~llGpsGsGKSTLLr~iaGl~~p 56 (359)
T 3fvq_A 30 GEILFIIGASGCGKTTLLRCLAGFEQP 56 (359)
T ss_dssp TCEEEEEESTTSSHHHHHHHHHTSSCC
T ss_pred CCEEEEECCCCchHHHHHHHHhcCCCC
Confidence 345789999999999999999997643
No 337
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=93.96 E-value=0.022 Score=53.35 Aligned_cols=24 Identities=38% Similarity=0.455 Sum_probs=21.4
Q ss_pred CceeEEeCCCCCcHHHHHHHHHHH
Q 035603 227 KRGYLLFGPPGTGKSTMIAAMANC 250 (431)
Q Consensus 227 ~rg~LL~GPPGtGKTsla~aiA~~ 250 (431)
..-+.|.||.|+|||||+++|++.
T Consensus 29 Ge~~~l~G~nGsGKSTLlk~l~Gl 52 (250)
T 2d2e_A 29 GEVHALMGPNGAGKSTLGKILAGD 52 (250)
T ss_dssp TCEEEEECSTTSSHHHHHHHHHTC
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 345789999999999999999996
No 338
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=93.94 E-value=0.024 Score=49.63 Aligned_cols=21 Identities=24% Similarity=0.642 Sum_probs=19.4
Q ss_pred eeEEeCCCCCcHHHHHHHHHH
Q 035603 229 GYLLFGPPGTGKSTMIAAMAN 249 (431)
Q Consensus 229 g~LL~GPPGtGKTsla~aiA~ 249 (431)
-++|.|+||+|||||++.+++
T Consensus 4 kv~ivG~~gvGKStLl~~l~~ 24 (184)
T 2zej_A 4 KLMIVGNTGSGKTTLLQQLMK 24 (184)
T ss_dssp EEEEESCTTSSHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHhc
Confidence 478999999999999999986
No 339
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=93.94 E-value=0.023 Score=59.12 Aligned_cols=29 Identities=28% Similarity=0.400 Sum_probs=23.7
Q ss_pred CCCCCceeEEeCCCCCcHHHHHHH--HHHHc
Q 035603 223 GKAWKRGYLLFGPPGTGKSTMIAA--MANCL 251 (431)
Q Consensus 223 g~~~~rg~LL~GPPGtGKTsla~a--iA~~l 251 (431)
+++....++|.||||||||+|++. +++.+
T Consensus 35 ~i~~Ge~~~l~G~nGsGKSTL~~~~ll~Gl~ 65 (525)
T 1tf7_A 35 GLPIGRSTLVSGTSGTGKTLFSIQFLYNGII 65 (525)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHHHHHH
T ss_pred CCCCCeEEEEEcCCCCCHHHHHHHHHHHHHH
Confidence 456677899999999999999999 45543
No 340
>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens}
Probab=93.93 E-value=0.028 Score=49.30 Aligned_cols=24 Identities=25% Similarity=0.330 Sum_probs=20.8
Q ss_pred ceeEEeCCCCCcHHHHHHHHHHHc
Q 035603 228 RGYLLFGPPGTGKSTMIAAMANCL 251 (431)
Q Consensus 228 rg~LL~GPPGtGKTsla~aiA~~l 251 (431)
--+++.|++|+|||+|+.++.+..
T Consensus 22 ~ki~v~G~~~~GKSsli~~l~~~~ 45 (190)
T 2h57_A 22 VHVLCLGLDNSGKTTIINKLKPSN 45 (190)
T ss_dssp EEEEEEECTTSSHHHHHHHTSCGG
T ss_pred cEEEEECCCCCCHHHHHHHHhcCC
Confidence 358999999999999999997654
No 341
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=93.91 E-value=0.024 Score=53.39 Aligned_cols=28 Identities=25% Similarity=0.411 Sum_probs=23.4
Q ss_pred CCceeEEeCCCCCcHHHHHHHHHHHcCC
Q 035603 226 WKRGYLLFGPPGTGKSTMIAAMANCLNY 253 (431)
Q Consensus 226 ~~rg~LL~GPPGtGKTsla~aiA~~l~~ 253 (431)
...-+.|.||.|+|||||.++|++.+..
T Consensus 40 ~Gei~~l~G~NGsGKSTLlk~l~Gl~~p 67 (256)
T 1vpl_A 40 EGEIFGLIGPNGAGKTTTLRIISTLIKP 67 (256)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHTTSSCC
T ss_pred CCcEEEEECCCCCCHHHHHHHHhcCCCC
Confidence 3445789999999999999999987643
No 342
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=93.91 E-value=0.021 Score=53.19 Aligned_cols=27 Identities=30% Similarity=0.432 Sum_probs=23.0
Q ss_pred CceeEEeCCCCCcHHHHHHHHHHHcCC
Q 035603 227 KRGYLLFGPPGTGKSTMIAAMANCLNY 253 (431)
Q Consensus 227 ~rg~LL~GPPGtGKTsla~aiA~~l~~ 253 (431)
..-+.|.||.|+|||||.++|++.+..
T Consensus 32 Ge~~~l~G~nGsGKSTLl~~l~Gl~~p 58 (240)
T 1ji0_A 32 GQIVTLIGANGAGKTTTLSAIAGLVRA 58 (240)
T ss_dssp TCEEEEECSTTSSHHHHHHHHTTSSCC
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCCC
Confidence 345789999999999999999987653
No 343
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*
Probab=93.91 E-value=0.033 Score=47.20 Aligned_cols=22 Identities=23% Similarity=0.480 Sum_probs=19.9
Q ss_pred eeEEeCCCCCcHHHHHHHHHHH
Q 035603 229 GYLLFGPPGTGKSTMIAAMANC 250 (431)
Q Consensus 229 g~LL~GPPGtGKTsla~aiA~~ 250 (431)
-+++.|+||+|||+|+.++.+.
T Consensus 5 ki~v~G~~~~GKssli~~l~~~ 26 (167)
T 1c1y_A 5 KLVVLGSGGVGKSALTVQFVQG 26 (167)
T ss_dssp EEEEECSTTSSHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 5889999999999999999863
No 344
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Probab=93.88 E-value=0.027 Score=47.86 Aligned_cols=21 Identities=29% Similarity=0.596 Sum_probs=19.4
Q ss_pred eeEEeCCCCCcHHHHHHHHHH
Q 035603 229 GYLLFGPPGTGKSTMIAAMAN 249 (431)
Q Consensus 229 g~LL~GPPGtGKTsla~aiA~ 249 (431)
-+++.|+||+|||+|+.++.+
T Consensus 5 ~i~v~G~~~~GKssli~~l~~ 25 (172)
T 2erx_A 5 RVAVFGAGGVGKSSLVLRFVK 25 (172)
T ss_dssp EEEEECCTTSSHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHc
Confidence 478999999999999999986
No 345
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=93.87 E-value=0.021 Score=54.45 Aligned_cols=26 Identities=27% Similarity=0.406 Sum_probs=22.5
Q ss_pred CceeEEeCCCCCcHHHHHHHHHHHcC
Q 035603 227 KRGYLLFGPPGTGKSTMIAAMANCLN 252 (431)
Q Consensus 227 ~rg~LL~GPPGtGKTsla~aiA~~l~ 252 (431)
..-+.|.||.|+|||||+++|++.+.
T Consensus 34 Ge~~~iiGpnGsGKSTLl~~l~Gl~~ 59 (275)
T 3gfo_A 34 GEVTAILGGNGVGKSTLFQNFNGILK 59 (275)
T ss_dssp TSEEEEECCTTSSHHHHHHHHTTSSC
T ss_pred CCEEEEECCCCCCHHHHHHHHHcCCC
Confidence 34578999999999999999998764
No 346
>4hlc_A DTMP kinase, thymidylate kinase; TMK, MRSA, pipiridine, transfera transferase inhibitor complex; HET: T05; 1.55A {Staphylococcus aureus subsp} PDB: 2cck_A 4gfd_A* 4gsy_A* 4hdc_A* 4hej_A* 2ccj_A* 4hld_A* 2ccg_A*
Probab=93.87 E-value=0.069 Score=48.41 Aligned_cols=46 Identities=30% Similarity=0.491 Sum_probs=30.6
Q ss_pred eeEEeCCCCCcHHHHHHHHHHHc--CCCeEEecccC-cCChHHHHHHHH
Q 035603 229 GYLLFGPPGTGKSTMIAAMANCL--NYDVYDLELTS-VENNNELRSLLV 274 (431)
Q Consensus 229 g~LL~GPPGtGKTsla~aiA~~l--~~~i~~l~~~~-~~~~~~l~~l~~ 274 (431)
=|.|.|+.|+||||.++.++..| |.+++...-.. ......+++++.
T Consensus 4 FI~~EG~dGsGKsTq~~~L~~~L~~~~~v~~~~eP~~t~~g~~ir~~l~ 52 (205)
T 4hlc_A 4 FITFEGPEGSGKTTVINEVYHRLVKDYDVIMTREPGGVPTGEEIRKIVL 52 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHTTTSCEEEEESSTTCHHHHHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHHHHHHCCCCEEEeeCCCCChHHHHHHHHHh
Confidence 36688999999999999999988 45555443222 112244555554
No 347
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=93.87 E-value=0.019 Score=53.85 Aligned_cols=27 Identities=41% Similarity=0.509 Sum_probs=23.1
Q ss_pred CceeEEeCCCCCcHHHHHHHHHHHcCC
Q 035603 227 KRGYLLFGPPGTGKSTMIAAMANCLNY 253 (431)
Q Consensus 227 ~rg~LL~GPPGtGKTsla~aiA~~l~~ 253 (431)
..-+.|.||.|+|||||.++|++.+..
T Consensus 26 Ge~~~liG~NGsGKSTLlk~l~Gl~~p 52 (249)
T 2qi9_C 26 GEILHLVGPNGAGKSTLLARMAGMTSG 52 (249)
T ss_dssp TCEEEEECCTTSSHHHHHHHHTTSSCC
T ss_pred CCEEEEECCCCCcHHHHHHHHhCCCCC
Confidence 345789999999999999999997654
No 348
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}
Probab=93.87 E-value=0.027 Score=55.92 Aligned_cols=26 Identities=35% Similarity=0.576 Sum_probs=22.4
Q ss_pred CceeEEeCCCCCcHHHHHHHHHHHcC
Q 035603 227 KRGYLLFGPPGTGKSTMIAAMANCLN 252 (431)
Q Consensus 227 ~rg~LL~GPPGtGKTsla~aiA~~l~ 252 (431)
..-+.|.||.|||||||.++||+.+.
T Consensus 29 Ge~~~llGpnGsGKSTLLr~iaGl~~ 54 (362)
T 2it1_A 29 GEFMALLGPSGSGKSTLLYTIAGIYK 54 (362)
T ss_dssp TCEEEEECCTTSSHHHHHHHHHTSSC
T ss_pred CCEEEEECCCCchHHHHHHHHhcCCC
Confidence 34577999999999999999998764
No 349
>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*
Probab=93.86 E-value=0.033 Score=48.43 Aligned_cols=23 Identities=22% Similarity=0.504 Sum_probs=20.6
Q ss_pred ceeEEeCCCCCcHHHHHHHHHHH
Q 035603 228 RGYLLFGPPGTGKSTMIAAMANC 250 (431)
Q Consensus 228 rg~LL~GPPGtGKTsla~aiA~~ 250 (431)
.-++|.|+||+|||+|+.++.+.
T Consensus 12 ~ki~v~G~~~~GKSsli~~l~~~ 34 (195)
T 3bc1_A 12 IKFLALGDSGVGKTSVLYQYTDG 34 (195)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHhcC
Confidence 46899999999999999999863
No 350
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}
Probab=93.85 E-value=0.027 Score=55.80 Aligned_cols=26 Identities=31% Similarity=0.487 Sum_probs=22.4
Q ss_pred CceeEEeCCCCCcHHHHHHHHHHHcC
Q 035603 227 KRGYLLFGPPGTGKSTMIAAMANCLN 252 (431)
Q Consensus 227 ~rg~LL~GPPGtGKTsla~aiA~~l~ 252 (431)
..-+.|.||.|||||||.++||+.+.
T Consensus 29 Ge~~~llGpnGsGKSTLLr~iaGl~~ 54 (359)
T 2yyz_A 29 GEFVALLGPSGCGKTTTLLMLAGIYK 54 (359)
T ss_dssp TCEEEEECSTTSSHHHHHHHHHTSSC
T ss_pred CCEEEEEcCCCchHHHHHHHHHCCCC
Confidence 34577999999999999999998764
No 351
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...
Probab=93.85 E-value=0.034 Score=47.11 Aligned_cols=21 Identities=24% Similarity=0.395 Sum_probs=19.1
Q ss_pred eEEeCCCCCcHHHHHHHHHHH
Q 035603 230 YLLFGPPGTGKSTMIAAMANC 250 (431)
Q Consensus 230 ~LL~GPPGtGKTsla~aiA~~ 250 (431)
+++.|+||+|||+|+.++.+.
T Consensus 3 i~~~G~~~~GKssl~~~l~~~ 23 (164)
T 1r8s_A 3 ILMVGLDAAGKTTILYKLKLG 23 (164)
T ss_dssp EEEECSTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHcC
Confidence 789999999999999999763
No 352
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=93.84 E-value=0.024 Score=53.66 Aligned_cols=27 Identities=30% Similarity=0.447 Sum_probs=22.9
Q ss_pred CCceeEEeCCCCCcHHHHHHHHHHHcC
Q 035603 226 WKRGYLLFGPPGTGKSTMIAAMANCLN 252 (431)
Q Consensus 226 ~~rg~LL~GPPGtGKTsla~aiA~~l~ 252 (431)
...-+.|.||.|+|||||.++|++.+.
T Consensus 32 ~Ge~~~liG~nGsGKSTLl~~i~Gl~~ 58 (266)
T 2yz2_A 32 EGECLLVAGNTGSGKSTLLQIVAGLIE 58 (266)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTTSSC
T ss_pred CCCEEEEECCCCCcHHHHHHHHhCCCC
Confidence 344578999999999999999998764
No 353
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=93.83 E-value=0.017 Score=57.11 Aligned_cols=28 Identities=25% Similarity=0.533 Sum_probs=24.3
Q ss_pred CCceeEEeCCCCCcHHHHHHHHHHHcCC
Q 035603 226 WKRGYLLFGPPGTGKSTMIAAMANCLNY 253 (431)
Q Consensus 226 ~~rg~LL~GPPGtGKTsla~aiA~~l~~ 253 (431)
.+.-++|.||+|+|||||+++|++.+..
T Consensus 174 ~G~~i~ivG~sGsGKSTll~~l~~~~~~ 201 (361)
T 2gza_A 174 LERVIVVAGETGSGKTTLMKALMQEIPF 201 (361)
T ss_dssp TTCCEEEEESSSSCHHHHHHHHHTTSCT
T ss_pred cCCEEEEECCCCCCHHHHHHHHHhcCCC
Confidence 3457899999999999999999998753
No 354
>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*
Probab=93.82 E-value=0.048 Score=50.56 Aligned_cols=32 Identities=28% Similarity=0.494 Sum_probs=25.4
Q ss_pred ceeEEeCCCCCcHHHHHHHHHHHc--CCCeEEec
Q 035603 228 RGYLLFGPPGTGKSTMIAAMANCL--NYDVYDLE 259 (431)
Q Consensus 228 rg~LL~GPPGtGKTsla~aiA~~l--~~~i~~l~ 259 (431)
..+++.|++|+||||++..+|..+ |..+..++
T Consensus 15 ~i~~~~GkgGvGKTTl~~~La~~l~~g~~v~vvd 48 (262)
T 1yrb_A 15 MIVVFVGTAGSGKTTLTGEFGRYLEDNYKVAYVN 48 (262)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHHTTTSCEEEEE
T ss_pred EEEEEeCCCCCCHHHHHHHHHHHHHCCCeEEEEe
Confidence 356788999999999999999776 55655554
No 355
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*
Probab=93.79 E-value=0.033 Score=47.43 Aligned_cols=21 Identities=33% Similarity=0.602 Sum_probs=18.7
Q ss_pred eeEEeCCCCCcHHHHHHHHHH
Q 035603 229 GYLLFGPPGTGKSTMIAAMAN 249 (431)
Q Consensus 229 g~LL~GPPGtGKTsla~aiA~ 249 (431)
-+++.|+||+|||+|+.++.+
T Consensus 4 ki~ivG~~~~GKSsli~~l~~ 24 (169)
T 3q85_A 4 KVMLVGESGVGKSTLAGTFGG 24 (169)
T ss_dssp EEEEECSTTSSHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHh
Confidence 378999999999999999964
No 356
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=93.78 E-value=0.046 Score=55.40 Aligned_cols=59 Identities=17% Similarity=0.098 Sum_probs=37.1
Q ss_pred hhHHHHHHHHHHHHhCHHHHHHhCCCCCceeEEeCCCCCcHHHHHHHHHHHc---CCCeEEecc
Q 035603 200 KKKEAIKKDLIKFTEGKEYYAKIGKAWKRGYLLFGPPGTGKSTMIAAMANCL---NYDVYDLEL 260 (431)
Q Consensus 200 ~~k~~i~~~l~~~~~~~~~~~~~g~~~~rg~LL~GPPGtGKTsla~aiA~~l---~~~i~~l~~ 260 (431)
.+++.+.+.+...+.... ..+....++.+++.||+|+||||++..+|..+ +..+..+++
T Consensus 73 ~~~~~v~~~L~~~~~~~~--~~i~l~~~~vi~i~G~~GsGKTT~~~~LA~~l~~~g~~Vllvd~ 134 (425)
T 2ffh_A 73 VILATVYEALKEALGGEA--RLPVLKDRNLWFLVGLQGSGKTTTAAKLALYYKGKGRRPLLVAA 134 (425)
T ss_dssp HHHHHHHHHHHHHTTSSC--CCCCCCSSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEEC
T ss_pred HHHHHHHHHHHHHhCCCc--ccccCCCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEeec
Confidence 345555555555554221 11122235568888999999999999999876 455665554
No 357
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=93.78 E-value=0.029 Score=48.89 Aligned_cols=23 Identities=35% Similarity=0.509 Sum_probs=20.5
Q ss_pred ceeEEeCCCCCcHHHHHHHHHHH
Q 035603 228 RGYLLFGPPGTGKSTMIAAMANC 250 (431)
Q Consensus 228 rg~LL~GPPGtGKTsla~aiA~~ 250 (431)
.-++|.|++|+|||||+.++++.
T Consensus 8 ~~i~lvG~~gvGKStL~~~l~~~ 30 (188)
T 2wjg_A 8 YEIALIGNPNVGKSTIFNALTGE 30 (188)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTT
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 35889999999999999999873
No 358
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*
Probab=93.78 E-value=0.028 Score=55.95 Aligned_cols=27 Identities=30% Similarity=0.447 Sum_probs=22.9
Q ss_pred CceeEEeCCCCCcHHHHHHHHHHHcCC
Q 035603 227 KRGYLLFGPPGTGKSTMIAAMANCLNY 253 (431)
Q Consensus 227 ~rg~LL~GPPGtGKTsla~aiA~~l~~ 253 (431)
..-+.|.||.|||||||.++||+.+..
T Consensus 37 Ge~~~llGpnGsGKSTLLr~iaGl~~p 63 (372)
T 1v43_A 37 GEFLVLLGPSGCGKTTTLRMIAGLEEP 63 (372)
T ss_dssp TCEEEEECCTTSSHHHHHHHHHTSSCC
T ss_pred CCEEEEECCCCChHHHHHHHHHcCCCC
Confidence 345779999999999999999987643
No 359
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=93.78 E-value=0.03 Score=55.89 Aligned_cols=27 Identities=30% Similarity=0.460 Sum_probs=22.9
Q ss_pred CceeEEeCCCCCcHHHHHHHHHHHcCC
Q 035603 227 KRGYLLFGPPGTGKSTMIAAMANCLNY 253 (431)
Q Consensus 227 ~rg~LL~GPPGtGKTsla~aiA~~l~~ 253 (431)
..-+.|.||.|||||||.++||+.+..
T Consensus 29 Ge~~~llGpsGsGKSTLLr~iaGl~~p 55 (381)
T 3rlf_A 29 GEFVVFVGPSGCGKSTLLRMIAGLETI 55 (381)
T ss_dssp TCEEEEECCTTSSHHHHHHHHHTSSCC
T ss_pred CCEEEEEcCCCchHHHHHHHHHcCCCC
Confidence 345779999999999999999997643
No 360
>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*
Probab=93.73 E-value=0.031 Score=48.05 Aligned_cols=22 Identities=18% Similarity=0.436 Sum_probs=19.7
Q ss_pred ceeEEeCCCCCcHHHHHHHHHH
Q 035603 228 RGYLLFGPPGTGKSTMIAAMAN 249 (431)
Q Consensus 228 rg~LL~GPPGtGKTsla~aiA~ 249 (431)
--+++.|+||+|||+|+.++.+
T Consensus 7 ~ki~v~G~~~~GKssl~~~l~~ 28 (178)
T 2hxs_A 7 LKIVVLGDGASGKTSLTTCFAQ 28 (178)
T ss_dssp EEEEEECCTTSSHHHHHHHHHG
T ss_pred EEEEEECcCCCCHHHHHHHHHh
Confidence 3589999999999999999975
No 361
>3ld9_A DTMP kinase, thymidylate kinase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ehrlich chaffeensis; 2.15A {Ehrlichia chaffeensis}
Probab=93.72 E-value=0.034 Score=51.32 Aligned_cols=30 Identities=23% Similarity=0.151 Sum_probs=24.4
Q ss_pred ceeEEeCCCCCcHHHHHHHHHHHcCC----CeEE
Q 035603 228 RGYLLFGPPGTGKSTMIAAMANCLNY----DVYD 257 (431)
Q Consensus 228 rg~LL~GPPGtGKTsla~aiA~~l~~----~i~~ 257 (431)
.-+.|.|++|+||||+++.++..++. +++.
T Consensus 22 ~~i~~~G~~g~GKst~~~~l~~~l~~~~g~~v~~ 55 (223)
T 3ld9_A 22 MFITFEGIDGSGKTTQSHLLAEYLSEIYGVNNVV 55 (223)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHHHHHHCGGGEE
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHhhccCceeeE
Confidence 44678899999999999999987654 5554
No 362
>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*
Probab=93.72 E-value=0.037 Score=47.16 Aligned_cols=22 Identities=27% Similarity=0.499 Sum_probs=20.0
Q ss_pred ceeEEeCCCCCcHHHHHHHHHH
Q 035603 228 RGYLLFGPPGTGKSTMIAAMAN 249 (431)
Q Consensus 228 rg~LL~GPPGtGKTsla~aiA~ 249 (431)
.-+++.|+||+|||+|+.++.+
T Consensus 8 ~~i~v~G~~~~GKssl~~~l~~ 29 (171)
T 1upt_A 8 MRILILGLDGAGKTTILYRLQV 29 (171)
T ss_dssp EEEEEECSTTSSHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHhc
Confidence 4689999999999999999976
No 363
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=93.70 E-value=0.025 Score=55.91 Aligned_cols=26 Identities=31% Similarity=0.483 Sum_probs=22.4
Q ss_pred CceeEEeCCCCCcHHHHHHHHHHHcC
Q 035603 227 KRGYLLFGPPGTGKSTMIAAMANCLN 252 (431)
Q Consensus 227 ~rg~LL~GPPGtGKTsla~aiA~~l~ 252 (431)
..-+.|.||.|||||||.++||+.+.
T Consensus 41 Ge~~~llGpnGsGKSTLLr~iaGl~~ 66 (355)
T 1z47_A 41 GEMVGLLGPSGSGKTTILRLIAGLER 66 (355)
T ss_dssp TCEEEEECSTTSSHHHHHHHHHTSSC
T ss_pred CCEEEEECCCCCcHHHHHHHHhCCCC
Confidence 34577999999999999999998764
No 364
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*
Probab=93.70 E-value=0.034 Score=47.69 Aligned_cols=23 Identities=35% Similarity=0.549 Sum_probs=20.3
Q ss_pred eeEEeCCCCCcHHHHHHHHHHHc
Q 035603 229 GYLLFGPPGTGKSTMIAAMANCL 251 (431)
Q Consensus 229 g~LL~GPPGtGKTsla~aiA~~l 251 (431)
-.+++||.|+|||++..||.-.+
T Consensus 25 ~~~I~G~NGsGKStil~Ai~~~l 47 (149)
T 1f2t_A 25 INLIIGQNGSGKSSLLDAILVGL 47 (149)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHH
Confidence 35899999999999999998765
No 365
>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*
Probab=93.70 E-value=0.036 Score=48.04 Aligned_cols=22 Identities=23% Similarity=0.457 Sum_probs=20.1
Q ss_pred eeEEeCCCCCcHHHHHHHHHHH
Q 035603 229 GYLLFGPPGTGKSTMIAAMANC 250 (431)
Q Consensus 229 g~LL~GPPGtGKTsla~aiA~~ 250 (431)
-+++.|+||+|||+|+.++.+.
T Consensus 6 ki~v~G~~~~GKSsli~~l~~~ 27 (189)
T 4dsu_A 6 KLVVVGADGVGKSALTIQLIQN 27 (189)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 5899999999999999999864
No 366
>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*
Probab=93.69 E-value=0.033 Score=47.80 Aligned_cols=23 Identities=17% Similarity=0.345 Sum_probs=20.2
Q ss_pred ceeEEeCCCCCcHHHHHHHHHHH
Q 035603 228 RGYLLFGPPGTGKSTMIAAMANC 250 (431)
Q Consensus 228 rg~LL~GPPGtGKTsla~aiA~~ 250 (431)
.-+++.|++|+|||+|+.++.+.
T Consensus 15 ~~i~v~G~~~~GKssli~~l~~~ 37 (179)
T 2y8e_A 15 FKLVFLGEQSVGKTSLITRFMYD 37 (179)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHcC
Confidence 35899999999999999999863
No 367
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=93.69 E-value=0.023 Score=54.18 Aligned_cols=27 Identities=22% Similarity=0.473 Sum_probs=23.1
Q ss_pred CceeEEeCCCCCcHHHHHHHHHHHcCC
Q 035603 227 KRGYLLFGPPGTGKSTMIAAMANCLNY 253 (431)
Q Consensus 227 ~rg~LL~GPPGtGKTsla~aiA~~l~~ 253 (431)
..-+.|.||.|+|||||.++|++.+..
T Consensus 47 Ge~~~liG~NGsGKSTLlk~l~Gl~~p 73 (279)
T 2ihy_A 47 GDKWILYGLNGAGKTTLLNILNAYEPA 73 (279)
T ss_dssp TCEEEEECCTTSSHHHHHHHHTTSSCC
T ss_pred CCEEEEECCCCCcHHHHHHHHhCCCCC
Confidence 345789999999999999999997754
No 368
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=93.69 E-value=0.023 Score=53.36 Aligned_cols=26 Identities=23% Similarity=0.337 Sum_probs=22.6
Q ss_pred CceeEEeCCCCCcHHHHHHHHHHHcC
Q 035603 227 KRGYLLFGPPGTGKSTMIAAMANCLN 252 (431)
Q Consensus 227 ~rg~LL~GPPGtGKTsla~aiA~~l~ 252 (431)
+.-+.|.||.|+|||||.++|++.+.
T Consensus 31 Ge~~~l~G~nGsGKSTLl~~l~Gl~~ 56 (253)
T 2nq2_C 31 GDILAVLGQNGCGKSTLLDLLLGIHR 56 (253)
T ss_dssp TCEEEEECCSSSSHHHHHHHHTTSSC
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 34578999999999999999998764
No 369
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=93.66 E-value=0.023 Score=55.52 Aligned_cols=27 Identities=22% Similarity=0.469 Sum_probs=23.8
Q ss_pred CceeEEeCCCCCcHHHHHHHHHHHcCC
Q 035603 227 KRGYLLFGPPGTGKSTMIAAMANCLNY 253 (431)
Q Consensus 227 ~rg~LL~GPPGtGKTsla~aiA~~l~~ 253 (431)
+..+++.||+|+|||||+++|++.+..
T Consensus 171 g~~v~i~G~~GsGKTTll~~l~g~~~~ 197 (330)
T 2pt7_A 171 GKNVIVCGGTGSGKTTYIKSIMEFIPK 197 (330)
T ss_dssp TCCEEEEESTTSCHHHHHHHGGGGSCT
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCcC
Confidence 457899999999999999999998753
No 370
>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}
Probab=93.65 E-value=0.037 Score=48.36 Aligned_cols=23 Identities=22% Similarity=0.410 Sum_probs=20.8
Q ss_pred ceeEEeCCCCCcHHHHHHHHHHH
Q 035603 228 RGYLLFGPPGTGKSTMIAAMANC 250 (431)
Q Consensus 228 rg~LL~GPPGtGKTsla~aiA~~ 250 (431)
--+++.|+||+|||+|+.++.+.
T Consensus 8 ~ki~v~G~~~~GKSsli~~l~~~ 30 (208)
T 3clv_A 8 YKTVLLGESSVGKSSIVLRLTKD 30 (208)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHhC
Confidence 45899999999999999999875
No 371
>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*
Probab=93.65 E-value=0.038 Score=47.35 Aligned_cols=24 Identities=25% Similarity=0.480 Sum_probs=21.1
Q ss_pred CceeEEeCCCCCcHHHHHHHHHHH
Q 035603 227 KRGYLLFGPPGTGKSTMIAAMANC 250 (431)
Q Consensus 227 ~rg~LL~GPPGtGKTsla~aiA~~ 250 (431)
..-+++.|++|+|||+|+.++.+.
T Consensus 15 ~~~i~v~G~~~~GKSsli~~l~~~ 38 (179)
T 1z0f_A 15 IFKYIIIGDMGVGKSCLLHQFTEK 38 (179)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHS
T ss_pred ceEEEEECCCCCCHHHHHHHHHcC
Confidence 346899999999999999999864
No 372
>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}
Probab=93.62 E-value=0.038 Score=48.46 Aligned_cols=23 Identities=22% Similarity=0.481 Sum_probs=20.6
Q ss_pred ceeEEeCCCCCcHHHHHHHHHHH
Q 035603 228 RGYLLFGPPGTGKSTMIAAMANC 250 (431)
Q Consensus 228 rg~LL~GPPGtGKTsla~aiA~~ 250 (431)
.-+++.|+||+|||+|+.++.+.
T Consensus 26 ~ki~v~G~~~~GKSsLi~~l~~~ 48 (193)
T 2oil_A 26 FKVVLIGESGVGKTNLLSRFTRN 48 (193)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHS
T ss_pred eEEEEECcCCCCHHHHHHHHhcC
Confidence 46899999999999999999874
No 373
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=93.62 E-value=0.021 Score=50.40 Aligned_cols=25 Identities=28% Similarity=0.392 Sum_probs=22.1
Q ss_pred ceeEEeCCCCCcHHHHHHHHHHHcC
Q 035603 228 RGYLLFGPPGTGKSTMIAAMANCLN 252 (431)
Q Consensus 228 rg~LL~GPPGtGKTsla~aiA~~l~ 252 (431)
..+.|.||+|+|||||++.|++.+.
T Consensus 3 ~~v~IvG~SGsGKSTL~~~L~~~~~ 27 (171)
T 2f1r_A 3 LILSIVGTSDSGKTTLITRMMPILR 27 (171)
T ss_dssp CEEEEEESCHHHHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhh
Confidence 3578999999999999999999864
No 374
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12
Probab=93.61 E-value=0.024 Score=55.92 Aligned_cols=27 Identities=22% Similarity=0.482 Sum_probs=22.9
Q ss_pred CceeEEeCCCCCcHHHHHHHHHHHcCC
Q 035603 227 KRGYLLFGPPGTGKSTMIAAMANCLNY 253 (431)
Q Consensus 227 ~rg~LL~GPPGtGKTsla~aiA~~l~~ 253 (431)
..-+.|.||.|||||||.++||+....
T Consensus 26 Ge~~~llGpnGsGKSTLLr~iaGl~~p 52 (348)
T 3d31_A 26 GEYFVILGPTGAGKTLFLELIAGFHVP 52 (348)
T ss_dssp TCEEEEECCCTHHHHHHHHHHHTSSCC
T ss_pred CCEEEEECCCCccHHHHHHHHHcCCCC
Confidence 345779999999999999999987643
No 375
>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A*
Probab=93.60 E-value=0.19 Score=44.82 Aligned_cols=22 Identities=27% Similarity=0.489 Sum_probs=19.9
Q ss_pred ceeEEeCCCCCcHHHHHHHHHH
Q 035603 228 RGYLLFGPPGTGKSTMIAAMAN 249 (431)
Q Consensus 228 rg~LL~GPPGtGKTsla~aiA~ 249 (431)
.-++|.|+||+|||+|+.++.+
T Consensus 26 ~ki~vvG~~~~GKSsLi~~l~~ 47 (217)
T 2f7s_A 26 IKLLALGDSGVGKTTFLYRYTD 47 (217)
T ss_dssp EEEEEESCTTSSHHHHHHHHHC
T ss_pred EEEEEECcCCCCHHHHHHHHhc
Confidence 4589999999999999999985
No 376
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*
Probab=93.60 E-value=0.031 Score=47.48 Aligned_cols=21 Identities=38% Similarity=0.708 Sum_probs=18.8
Q ss_pred eeEEeCCCCCcHHHHHHHHHH
Q 035603 229 GYLLFGPPGTGKSTMIAAMAN 249 (431)
Q Consensus 229 g~LL~GPPGtGKTsla~aiA~ 249 (431)
-+++.|+||+|||+|+.++.+
T Consensus 4 ki~~vG~~~~GKSsli~~l~~ 24 (166)
T 3q72_A 4 KVLLLGAPGVGKSALARIFGG 24 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHcC
Confidence 478999999999999999864
No 377
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=93.58 E-value=0.043 Score=53.78 Aligned_cols=25 Identities=40% Similarity=0.494 Sum_probs=21.6
Q ss_pred CceeEEeCCCCCcHHHHHHHHHHHc
Q 035603 227 KRGYLLFGPPGTGKSTMIAAMANCL 251 (431)
Q Consensus 227 ~rg~LL~GPPGtGKTsla~aiA~~l 251 (431)
..-+.|.||||+|||||+++|++.+
T Consensus 55 g~~v~i~G~~GaGKSTLl~~l~g~~ 79 (337)
T 2qm8_A 55 AIRVGITGVPGVGKSTTIDALGSLL 79 (337)
T ss_dssp SEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHhh
Confidence 3457799999999999999999865
No 378
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=93.57 E-value=0.11 Score=50.98 Aligned_cols=24 Identities=46% Similarity=0.617 Sum_probs=21.0
Q ss_pred ceeEEeCCCCCcHHHHHHHHHHHc
Q 035603 228 RGYLLFGPPGTGKSTMIAAMANCL 251 (431)
Q Consensus 228 rg~LL~GPPGtGKTsla~aiA~~l 251 (431)
.-+.|.||||+|||||..++++.+
T Consensus 75 ~~v~lvG~pgaGKSTLln~L~~~~ 98 (349)
T 2www_A 75 FRVGLSGPPGAGKSTFIEYFGKML 98 (349)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHH
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHh
Confidence 357799999999999999999864
No 379
>2xzl_A ATP-dependent helicase NAM7; hydrolase-RNA complex, NMD, RNA degradation, allosteric REGU; HET: ADP 1PE; 2.40A {Saccharomyces cerevisiae}
Probab=93.57 E-value=0.036 Score=60.70 Aligned_cols=32 Identities=31% Similarity=0.404 Sum_probs=22.5
Q ss_pred eeEEeCCCCCcHHHHHHHHHHHc----CCCeEEecc
Q 035603 229 GYLLFGPPGTGKSTMIAAMANCL----NYDVYDLEL 260 (431)
Q Consensus 229 g~LL~GPPGtGKTsla~aiA~~l----~~~i~~l~~ 260 (431)
-+|+.||||||||+++..++..+ +..+..+..
T Consensus 377 ~~lI~GppGTGKT~~i~~~i~~l~~~~~~~ILv~a~ 412 (802)
T 2xzl_A 377 LSLIQGPPGTGKTVTSATIVYHLSKIHKDRILVCAP 412 (802)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHHHHHCCCEEEEES
T ss_pred CEEEECCCCCCHHHHHHHHHHHHHhCCCCeEEEEcC
Confidence 57899999999999877665433 445554433
No 380
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=93.56 E-value=0.022 Score=53.91 Aligned_cols=27 Identities=30% Similarity=0.509 Sum_probs=23.0
Q ss_pred CceeEEeCCCCCcHHHHHHHHHHHcCC
Q 035603 227 KRGYLLFGPPGTGKSTMIAAMANCLNY 253 (431)
Q Consensus 227 ~rg~LL~GPPGtGKTsla~aiA~~l~~ 253 (431)
..-+.|.||.|+|||||+++|++.+..
T Consensus 37 Ge~~~liG~nGsGKSTLl~~l~Gl~~p 63 (266)
T 4g1u_C 37 GEMVAIIGPNGAGKSTLLRLLTGYLSP 63 (266)
T ss_dssp TCEEEEECCTTSCHHHHHHHHTSSSCC
T ss_pred CCEEEEECCCCCcHHHHHHHHhcCCCC
Confidence 445789999999999999999997643
No 381
>4tmk_A Protein (thymidylate kinase); ATP:DTMP phosphotransferase, transferase; HET: T5A; 1.98A {Escherichia coli} SCOP: c.37.1.1 PDB: 5tmp_A*
Probab=93.55 E-value=0.034 Score=50.90 Aligned_cols=24 Identities=25% Similarity=0.367 Sum_probs=21.3
Q ss_pred ceeEEeCCCCCcHHHHHHHHHHHc
Q 035603 228 RGYLLFGPPGTGKSTMIAAMANCL 251 (431)
Q Consensus 228 rg~LL~GPPGtGKTsla~aiA~~l 251 (431)
.-+.|.||+|+||||.++.++..+
T Consensus 4 ~~i~~eG~~gsGKsT~~~~l~~~l 27 (213)
T 4tmk_A 4 KYIVIEGLEGAGKTTARNVVVETL 27 (213)
T ss_dssp CEEEEEECTTSCHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHH
Confidence 346789999999999999999877
No 382
>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*
Probab=93.54 E-value=0.04 Score=47.46 Aligned_cols=23 Identities=26% Similarity=0.498 Sum_probs=20.5
Q ss_pred ceeEEeCCCCCcHHHHHHHHHHH
Q 035603 228 RGYLLFGPPGTGKSTMIAAMANC 250 (431)
Q Consensus 228 rg~LL~GPPGtGKTsla~aiA~~ 250 (431)
.-+++.|+||+|||+|+.++.+.
T Consensus 13 ~ki~v~G~~~~GKSsli~~l~~~ 35 (181)
T 2efe_B 13 AKLVLLGDVGAGKSSLVLRFVKD 35 (181)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHC
T ss_pred eEEEEECcCCCCHHHHHHHHHcC
Confidence 46899999999999999999864
No 383
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=93.54 E-value=0.045 Score=47.02 Aligned_cols=23 Identities=22% Similarity=0.368 Sum_probs=20.5
Q ss_pred CceeEEeCCCCCcHHHHHHHHHH
Q 035603 227 KRGYLLFGPPGTGKSTMIAAMAN 249 (431)
Q Consensus 227 ~rg~LL~GPPGtGKTsla~aiA~ 249 (431)
..-+++.|+||+|||+|+.++.+
T Consensus 8 ~~~i~v~G~~~~GKssl~~~l~~ 30 (178)
T 2lkc_A 8 PPVVTIMGHVDHGKTTLLDAIRH 30 (178)
T ss_dssp CCEEEEESCTTTTHHHHHHHHHT
T ss_pred CCEEEEECCCCCCHHHHHHHHhC
Confidence 45689999999999999999976
No 384
>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*
Probab=93.52 E-value=0.041 Score=47.52 Aligned_cols=23 Identities=22% Similarity=0.375 Sum_probs=20.6
Q ss_pred ceeEEeCCCCCcHHHHHHHHHHH
Q 035603 228 RGYLLFGPPGTGKSTMIAAMANC 250 (431)
Q Consensus 228 rg~LL~GPPGtGKTsla~aiA~~ 250 (431)
.-+++.|++|+|||+|+.++.+.
T Consensus 19 ~ki~v~G~~~~GKSsli~~l~~~ 41 (187)
T 2a9k_A 19 HKVIMVGSGGVGKSALTLQFMYD 41 (187)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHhhC
Confidence 46899999999999999999864
No 385
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=93.51 E-value=0.041 Score=48.06 Aligned_cols=23 Identities=22% Similarity=0.398 Sum_probs=20.6
Q ss_pred ceeEEeCCCCCcHHHHHHHHHHH
Q 035603 228 RGYLLFGPPGTGKSTMIAAMANC 250 (431)
Q Consensus 228 rg~LL~GPPGtGKTsla~aiA~~ 250 (431)
--+++.|++|+|||||+.++++.
T Consensus 22 ~ki~vvG~~~~GKSsli~~l~~~ 44 (190)
T 3con_A 22 YKLVVVGAGGVGKSALTIQLIQN 44 (190)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEECcCCCCHHHHHHHHHcC
Confidence 35899999999999999999874
No 386
>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A
Probab=93.50 E-value=0.029 Score=55.89 Aligned_cols=26 Identities=31% Similarity=0.514 Sum_probs=22.3
Q ss_pred CceeEEeCCCCCcHHHHHHHHHHHcC
Q 035603 227 KRGYLLFGPPGTGKSTMIAAMANCLN 252 (431)
Q Consensus 227 ~rg~LL~GPPGtGKTsla~aiA~~l~ 252 (431)
..-+.|.||.|||||||.++||+.+.
T Consensus 29 Ge~~~llGpnGsGKSTLLr~iaGl~~ 54 (372)
T 1g29_1 29 GEFMILLGPSGCGKTTTLRMIAGLEE 54 (372)
T ss_dssp TCEEEEECSTTSSHHHHHHHHHTSSC
T ss_pred CCEEEEECCCCcHHHHHHHHHHcCCC
Confidence 34577999999999999999998654
No 387
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=93.47 E-value=0.037 Score=49.83 Aligned_cols=25 Identities=20% Similarity=0.373 Sum_probs=22.3
Q ss_pred ceeEEeCCCCCcHHHHHHHHHHHcC
Q 035603 228 RGYLLFGPPGTGKSTMIAAMANCLN 252 (431)
Q Consensus 228 rg~LL~GPPGtGKTsla~aiA~~l~ 252 (431)
+-+++.|+||+|||||+.+++..+.
T Consensus 31 ~~i~i~G~~g~GKTTl~~~l~~~~~ 55 (221)
T 2wsm_A 31 VAVNIMGAIGSGKTLLIERTIERIG 55 (221)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHHHT
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHhc
Confidence 4688999999999999999998864
No 388
>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*
Probab=93.46 E-value=0.053 Score=53.42 Aligned_cols=30 Identities=27% Similarity=0.418 Sum_probs=25.4
Q ss_pred ceeEEeCCCCCcHHHHHHHHHHHcCCCeEE
Q 035603 228 RGYLLFGPPGTGKSTMIAAMANCLNYDVYD 257 (431)
Q Consensus 228 rg~LL~GPPGtGKTsla~aiA~~l~~~i~~ 257 (431)
.-+.|.||+|+|||+|++.|++.+..+...
T Consensus 72 q~~gIiG~nGaGKTTLl~~I~g~~~~~~g~ 101 (347)
T 2obl_A 72 QRIGIFAGSGVGKSTLLGMICNGASADIIV 101 (347)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHSCCSEEE
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCCEEE
Confidence 347899999999999999999998766443
No 389
>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*
Probab=93.46 E-value=0.037 Score=48.28 Aligned_cols=23 Identities=17% Similarity=0.333 Sum_probs=20.6
Q ss_pred ceeEEeCCCCCcHHHHHHHHHHH
Q 035603 228 RGYLLFGPPGTGKSTMIAAMANC 250 (431)
Q Consensus 228 rg~LL~GPPGtGKTsla~aiA~~ 250 (431)
.-+++.|+||+|||+|+.++.+.
T Consensus 8 ~ki~v~G~~~vGKSsli~~l~~~ 30 (184)
T 1m7b_A 8 CKIVVVGDSQCGKTALLHVFAKD 30 (184)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHhcC
Confidence 45899999999999999999874
No 390
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=93.46 E-value=0.041 Score=65.39 Aligned_cols=46 Identities=15% Similarity=0.216 Sum_probs=34.0
Q ss_pred HHHHHHh---CCCCCceeEEeCCCCCcHHHHHHHHHHHc---CCCeEEeccc
Q 035603 216 KEYYAKI---GKAWKRGYLLFGPPGTGKSTMIAAMANCL---NYDVYDLELT 261 (431)
Q Consensus 216 ~~~~~~~---g~~~~rg~LL~GPPGtGKTsla~aiA~~l---~~~i~~l~~~ 261 (431)
+.+-..+ |++.++.++|+||||+|||+|+..+|... |..++.++..
T Consensus 369 ~~LD~lLG~GGl~~G~lilI~G~pGsGKTtLaLqia~~~a~~G~~vlyis~E 420 (2050)
T 3cmu_A 369 LSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAE 420 (2050)
T ss_dssp HHHHHHHSSSSEETTSEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEECTT
T ss_pred HHHHHHhccCCccCCcEEEEEeCCCCCHHHHHHHHHHHHHhcCCeEEEEEcC
Confidence 4444445 47888899999999999999999998765 3455555443
No 391
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*
Probab=93.44 E-value=0.042 Score=47.92 Aligned_cols=24 Identities=21% Similarity=0.310 Sum_probs=20.9
Q ss_pred ceeEEeCCCCCcHHHHHHHHHHHc
Q 035603 228 RGYLLFGPPGTGKSTMIAAMANCL 251 (431)
Q Consensus 228 rg~LL~GPPGtGKTsla~aiA~~l 251 (431)
.-++|.|+||+|||+|++.+.+..
T Consensus 15 ~ki~vvG~~~~GKssL~~~l~~~~ 38 (198)
T 3t1o_A 15 FKIVYYGPGLSGKTTNLKWIYSKV 38 (198)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHTS
T ss_pred cEEEEECCCCCCHHHHHHHHHhhc
Confidence 358999999999999999988754
No 392
>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*
Probab=93.44 E-value=0.038 Score=47.96 Aligned_cols=23 Identities=30% Similarity=0.547 Sum_probs=20.5
Q ss_pred ceeEEeCCCCCcHHHHHHHHHHH
Q 035603 228 RGYLLFGPPGTGKSTMIAAMANC 250 (431)
Q Consensus 228 rg~LL~GPPGtGKTsla~aiA~~ 250 (431)
.-+++.|++|+|||+|+.++.+.
T Consensus 11 ~ki~v~G~~~~GKSsli~~l~~~ 33 (186)
T 2bme_A 11 FKFLVIGNAGTGKSCLLHQFIEK 33 (186)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHcC
Confidence 46899999999999999999864
No 393
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*
Probab=93.42 E-value=0.038 Score=47.45 Aligned_cols=23 Identities=22% Similarity=0.416 Sum_probs=20.7
Q ss_pred ceeEEeCCCCCcHHHHHHHHHHH
Q 035603 228 RGYLLFGPPGTGKSTMIAAMANC 250 (431)
Q Consensus 228 rg~LL~GPPGtGKTsla~aiA~~ 250 (431)
.-+++.|++|+|||+|+.++.+.
T Consensus 10 ~~i~v~G~~~~GKssli~~l~~~ 32 (181)
T 2fn4_A 10 HKLVVVGGGGVGKSALTIQFIQS 32 (181)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHhC
Confidence 46899999999999999999875
No 394
>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}
Probab=93.38 E-value=0.04 Score=47.34 Aligned_cols=22 Identities=32% Similarity=0.605 Sum_probs=19.6
Q ss_pred ceeEEeCCCCCcHHHHHHHHHH
Q 035603 228 RGYLLFGPPGTGKSTMIAAMAN 249 (431)
Q Consensus 228 rg~LL~GPPGtGKTsla~aiA~ 249 (431)
.-+++.|+||+|||+|+.++.+
T Consensus 10 ~~i~v~G~~~~GKssl~~~l~~ 31 (181)
T 3tw8_B 10 FKLLIIGDSGVGKSSLLLRFAD 31 (181)
T ss_dssp EEEEEECCTTSCHHHHHHHHCS
T ss_pred eEEEEECCCCCCHHHHHHHHhc
Confidence 4589999999999999999864
No 395
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=93.36 E-value=0.031 Score=52.85 Aligned_cols=25 Identities=32% Similarity=0.717 Sum_probs=22.3
Q ss_pred CceeEEeCCCCCcHHHHHHHHHHHc
Q 035603 227 KRGYLLFGPPGTGKSTMIAAMANCL 251 (431)
Q Consensus 227 ~rg~LL~GPPGtGKTsla~aiA~~l 251 (431)
..-+.|.||.|+|||||.++|++.+
T Consensus 30 Ge~~~i~G~NGsGKSTLlk~l~Gl~ 54 (263)
T 2pjz_A 30 GEKVIILGPNGSGKTTLLRAISGLL 54 (263)
T ss_dssp SSEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CEEEEEECCCCCCHHHHHHHHhCCC
Confidence 4567899999999999999999876
No 396
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=93.34 E-value=0.033 Score=48.33 Aligned_cols=22 Identities=32% Similarity=0.591 Sum_probs=20.1
Q ss_pred eeEEeCCCCCcHHHHHHHHHHH
Q 035603 229 GYLLFGPPGTGKSTMIAAMANC 250 (431)
Q Consensus 229 g~LL~GPPGtGKTsla~aiA~~ 250 (431)
-+.|.|+||+|||||+.++++.
T Consensus 6 ki~ivG~~g~GKStLl~~l~~~ 27 (172)
T 2gj8_A 6 KVVIAGRPNAGKSSLLNALAGR 27 (172)
T ss_dssp EEEEEESTTSSHHHHHHHHHTS
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5789999999999999999875
No 397
>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*
Probab=93.29 E-value=0.047 Score=47.78 Aligned_cols=23 Identities=26% Similarity=0.388 Sum_probs=20.5
Q ss_pred ceeEEeCCCCCcHHHHHHHHHHH
Q 035603 228 RGYLLFGPPGTGKSTMIAAMANC 250 (431)
Q Consensus 228 rg~LL~GPPGtGKTsla~aiA~~ 250 (431)
.-+++.|+||+|||+|+.++.+.
T Consensus 23 ~ki~vvG~~~~GKSsli~~l~~~ 45 (189)
T 2gf9_A 23 FKLLLIGNSSVGKTSFLFRYADD 45 (189)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHcC
Confidence 46899999999999999999864
No 398
>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=93.28 E-value=0.047 Score=46.95 Aligned_cols=23 Identities=22% Similarity=0.460 Sum_probs=20.4
Q ss_pred ceeEEeCCCCCcHHHHHHHHHHH
Q 035603 228 RGYLLFGPPGTGKSTMIAAMANC 250 (431)
Q Consensus 228 rg~LL~GPPGtGKTsla~aiA~~ 250 (431)
.-+++.|+||+|||+|+.++.+.
T Consensus 11 ~~i~v~G~~~~GKssli~~l~~~ 33 (180)
T 2g6b_A 11 FKVMLVGDSGVGKTCLLVRFKDG 33 (180)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEECcCCCCHHHHHHHHHhC
Confidence 35899999999999999999864
No 399
>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*
Probab=93.27 E-value=0.024 Score=56.07 Aligned_cols=26 Identities=27% Similarity=0.510 Sum_probs=22.4
Q ss_pred CceeEEeCCCCCcHHHHHHHHHHHcC
Q 035603 227 KRGYLLFGPPGTGKSTMIAAMANCLN 252 (431)
Q Consensus 227 ~rg~LL~GPPGtGKTsla~aiA~~l~ 252 (431)
..-+.|.||.|||||||.++||+.+.
T Consensus 31 Ge~~~llGpnGsGKSTLLr~iaGl~~ 56 (353)
T 1oxx_K 31 GERFGILGPSGAGKTTFMRIIAGLDV 56 (353)
T ss_dssp TCEEEEECSCHHHHHHHHHHHHTSSC
T ss_pred CCEEEEECCCCCcHHHHHHHHhCCCC
Confidence 34577999999999999999998654
No 400
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=93.26 E-value=0.067 Score=51.36 Aligned_cols=34 Identities=24% Similarity=0.298 Sum_probs=26.5
Q ss_pred CceeEEeCCCCCcHHHHHHHHHHHc---CCCeEEecc
Q 035603 227 KRGYLLFGPPGTGKSTMIAAMANCL---NYDVYDLEL 260 (431)
Q Consensus 227 ~rg~LL~GPPGtGKTsla~aiA~~l---~~~i~~l~~ 260 (431)
++.+.+.||+|+||||++..+|..+ +..+..++.
T Consensus 98 ~~~i~i~g~~G~GKTT~~~~la~~~~~~~~~v~l~~~ 134 (295)
T 1ls1_A 98 RNLWFLVGLQGSGKTTTAAKLALYYKGKGRRPLLVAA 134 (295)
T ss_dssp SEEEEEECCTTTTHHHHHHHHHHHHHHTTCCEEEEEC
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEecC
Confidence 4567788999999999999999865 455655554
No 401
>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=93.26 E-value=0.051 Score=47.88 Aligned_cols=24 Identities=25% Similarity=0.493 Sum_probs=21.2
Q ss_pred CceeEEeCCCCCcHHHHHHHHHHH
Q 035603 227 KRGYLLFGPPGTGKSTMIAAMANC 250 (431)
Q Consensus 227 ~rg~LL~GPPGtGKTsla~aiA~~ 250 (431)
..-+++.|+||+|||+|+.++.+.
T Consensus 28 ~~ki~v~G~~~vGKSsli~~l~~~ 51 (196)
T 2atv_A 28 EVKLAIFGRAGVGKSALVVRFLTK 51 (196)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHS
T ss_pred ceEEEEECCCCCCHHHHHHHHHhC
Confidence 456899999999999999999874
No 402
>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*
Probab=93.26 E-value=0.048 Score=47.22 Aligned_cols=23 Identities=22% Similarity=0.330 Sum_probs=20.5
Q ss_pred ceeEEeCCCCCcHHHHHHHHHHH
Q 035603 228 RGYLLFGPPGTGKSTMIAAMANC 250 (431)
Q Consensus 228 rg~LL~GPPGtGKTsla~aiA~~ 250 (431)
.-+++.|+||+|||+|+.++.+.
T Consensus 19 ~ki~v~G~~~~GKSsl~~~l~~~ 41 (183)
T 3kkq_A 19 YKLVVVGDGGVGKSALTIQFFQK 41 (183)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHhC
Confidence 45799999999999999999864
No 403
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*
Probab=93.21 E-value=0.034 Score=48.70 Aligned_cols=24 Identities=29% Similarity=0.362 Sum_probs=20.9
Q ss_pred CceeEEeCCCCCcHHHHHHHHHHH
Q 035603 227 KRGYLLFGPPGTGKSTMIAAMANC 250 (431)
Q Consensus 227 ~rg~LL~GPPGtGKTsla~aiA~~ 250 (431)
..-+++.|+||+|||||+.++.+.
T Consensus 23 ~~~i~v~G~~~~GKSsli~~l~~~ 46 (195)
T 1svi_A 23 LPEIALAGRSNVGKSSFINSLINR 46 (195)
T ss_dssp CCEEEEEEBTTSSHHHHHHHHHTC
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 346899999999999999999754
No 404
>2fz4_A DNA repair protein RAD25; RECA-like domain, DNA damage recognition domain, DNA binding; HET: DNA; 2.40A {Archaeoglobus fulgidus} SCOP: c.37.1.19
Probab=93.19 E-value=0.074 Score=49.14 Aligned_cols=32 Identities=22% Similarity=0.176 Sum_probs=27.0
Q ss_pred eeEEeCCCCCcHHHHHHHHHHHcCCCeEEecc
Q 035603 229 GYLLFGPPGTGKSTMIAAMANCLNYDVYDLEL 260 (431)
Q Consensus 229 g~LL~GPPGtGKTsla~aiA~~l~~~i~~l~~ 260 (431)
.+|+.||+|+|||.++.+++..++..++.+-.
T Consensus 110 ~~ll~~~tG~GKT~~a~~~~~~~~~~~liv~P 141 (237)
T 2fz4_A 110 RGCIVLPTGSGKTHVAMAAINELSTPTLIVVP 141 (237)
T ss_dssp EEEEEESSSTTHHHHHHHHHHHSCSCEEEEES
T ss_pred CEEEEeCCCCCHHHHHHHHHHHcCCCEEEEeC
Confidence 48999999999999999999988777666543
No 405
>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}
Probab=93.15 E-value=0.05 Score=47.58 Aligned_cols=23 Identities=35% Similarity=0.521 Sum_probs=20.6
Q ss_pred ceeEEeCCCCCcHHHHHHHHHHH
Q 035603 228 RGYLLFGPPGTGKSTMIAAMANC 250 (431)
Q Consensus 228 rg~LL~GPPGtGKTsla~aiA~~ 250 (431)
.-+++.|+||+|||+|+.++.+.
T Consensus 17 ~ki~v~G~~~~GKSsli~~l~~~ 39 (196)
T 3tkl_A 17 FKLLLIGDSGVGKSCLLLRFADD 39 (196)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEECcCCCCHHHHHHHHHcC
Confidence 45899999999999999999874
No 406
>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}
Probab=93.14 E-value=0.054 Score=47.95 Aligned_cols=24 Identities=21% Similarity=0.350 Sum_probs=21.0
Q ss_pred CceeEEeCCCCCcHHHHHHHHHHH
Q 035603 227 KRGYLLFGPPGTGKSTMIAAMANC 250 (431)
Q Consensus 227 ~rg~LL~GPPGtGKTsla~aiA~~ 250 (431)
..-+++.|++|+|||+|+.++.+.
T Consensus 28 ~~ki~v~G~~~~GKSsli~~l~~~ 51 (199)
T 2p5s_A 28 AYKIVLAGDAAVGKSSFLMRLCKN 51 (199)
T ss_dssp CEEEEEESSTTSSHHHHHHHHHHC
T ss_pred CeEEEEECcCCCCHHHHHHHHHhC
Confidence 356899999999999999999864
No 407
>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...
Probab=93.12 E-value=0.054 Score=46.76 Aligned_cols=23 Identities=13% Similarity=0.296 Sum_probs=20.2
Q ss_pred ceeEEeCCCCCcHHHHHHHHHHH
Q 035603 228 RGYLLFGPPGTGKSTMIAAMANC 250 (431)
Q Consensus 228 rg~LL~GPPGtGKTsla~aiA~~ 250 (431)
--+++.|+||+|||+|+.++.+.
T Consensus 6 ~~i~~~G~~~~GKssl~~~l~~~ 28 (186)
T 1mh1_A 6 IKCVVVGDGAVGKTCLLISYTTN 28 (186)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHHcC
Confidence 35899999999999999999863
No 408
>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*
Probab=93.11 E-value=0.045 Score=48.25 Aligned_cols=22 Identities=27% Similarity=0.525 Sum_probs=20.2
Q ss_pred ceeEEeCCCCCcHHHHHHHHHH
Q 035603 228 RGYLLFGPPGTGKSTMIAAMAN 249 (431)
Q Consensus 228 rg~LL~GPPGtGKTsla~aiA~ 249 (431)
.-+++.|+||+|||+|+.++.+
T Consensus 24 ~ki~~vG~~~vGKSsli~~l~~ 45 (190)
T 1m2o_B 24 GKLLFLGLDNAGKTTLLHMLKN 45 (190)
T ss_dssp CEEEEEESTTSSHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHhc
Confidence 3689999999999999999987
No 409
>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8
Probab=93.10 E-value=0.052 Score=47.37 Aligned_cols=23 Identities=26% Similarity=0.514 Sum_probs=20.6
Q ss_pred ceeEEeCCCCCcHHHHHHHHHHH
Q 035603 228 RGYLLFGPPGTGKSTMIAAMANC 250 (431)
Q Consensus 228 rg~LL~GPPGtGKTsla~aiA~~ 250 (431)
.-+++.|+||+|||+|+.++.+.
T Consensus 16 ~~i~v~G~~~~GKssli~~l~~~ 38 (195)
T 1x3s_A 16 LKILIIGESGVGKSSLLLRFTDD 38 (195)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHcC
Confidence 46899999999999999999874
No 410
>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C
Probab=93.09 E-value=0.053 Score=46.75 Aligned_cols=23 Identities=13% Similarity=0.257 Sum_probs=20.5
Q ss_pred ceeEEeCCCCCcHHHHHHHHHHH
Q 035603 228 RGYLLFGPPGTGKSTMIAAMANC 250 (431)
Q Consensus 228 rg~LL~GPPGtGKTsla~aiA~~ 250 (431)
--+++.|++|+|||+|+.++.+.
T Consensus 9 ~ki~v~G~~~~GKssl~~~~~~~ 31 (182)
T 3bwd_D 9 IKCVTVGDGAVGKTCLLISYTSN 31 (182)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHhcC
Confidence 46899999999999999999864
No 411
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=93.06 E-value=0.033 Score=53.44 Aligned_cols=27 Identities=19% Similarity=0.348 Sum_probs=22.9
Q ss_pred CCceeEEeCCCCCcHHHHHHHHHHHcC
Q 035603 226 WKRGYLLFGPPGTGKSTMIAAMANCLN 252 (431)
Q Consensus 226 ~~rg~LL~GPPGtGKTsla~aiA~~l~ 252 (431)
...-+.|.||.|+|||||.++|++.+.
T Consensus 63 ~Ge~~~i~G~NGsGKSTLlk~l~Gl~~ 89 (290)
T 2bbs_A 63 RGQLLAVAGSTGAGKTSLLMMIMGELE 89 (290)
T ss_dssp TTCEEEEEESTTSSHHHHHHHHTTSSC
T ss_pred CCCEEEEECCCCCcHHHHHHHHhcCCC
Confidence 344578999999999999999998753
No 412
>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}
Probab=93.05 E-value=0.052 Score=47.86 Aligned_cols=23 Identities=22% Similarity=0.375 Sum_probs=20.4
Q ss_pred ceeEEeCCCCCcHHHHHHHHHHH
Q 035603 228 RGYLLFGPPGTGKSTMIAAMANC 250 (431)
Q Consensus 228 rg~LL~GPPGtGKTsla~aiA~~ 250 (431)
.-+++.|++|+|||+|+.++.+.
T Consensus 15 ~ki~v~G~~~~GKSsli~~l~~~ 37 (206)
T 2bov_A 15 HKVIMVGSGGVGKSALTLQFMYD 37 (206)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHHhC
Confidence 46899999999999999999864
No 413
>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}
Probab=93.02 E-value=0.053 Score=47.57 Aligned_cols=23 Identities=22% Similarity=0.387 Sum_probs=20.3
Q ss_pred ceeEEeCCCCCcHHHHHHHHHHH
Q 035603 228 RGYLLFGPPGTGKSTMIAAMANC 250 (431)
Q Consensus 228 rg~LL~GPPGtGKTsla~aiA~~ 250 (431)
--+++.|++|+|||+|+..+.+.
T Consensus 22 ~ki~vvG~~~vGKTsLi~~l~~~ 44 (187)
T 3c5c_A 22 VNLAILGRRGAGKSALTVKFLTK 44 (187)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCcHHHHHHHHHhC
Confidence 35899999999999999999864
No 414
>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8
Probab=93.02 E-value=0.043 Score=47.65 Aligned_cols=22 Identities=27% Similarity=0.406 Sum_probs=19.6
Q ss_pred eeEEeCCCCCcHHHHHHHHHHH
Q 035603 229 GYLLFGPPGTGKSTMIAAMANC 250 (431)
Q Consensus 229 g~LL~GPPGtGKTsla~aiA~~ 250 (431)
-+++.|+||+|||||+.++.+.
T Consensus 3 ki~v~G~~~~GKSsli~~l~~~ 24 (190)
T 2cxx_A 3 TIIFAGRSNVGKSTLIYRLTGK 24 (190)
T ss_dssp EEEEEEBTTSSHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHhCc
Confidence 3789999999999999999863
No 415
>2gks_A Bifunctional SAT/APS kinase; transferase, sulfurylase; HET: ADP; 2.31A {Aquifex aeolicus}
Probab=93.01 E-value=0.05 Score=56.96 Aligned_cols=32 Identities=34% Similarity=0.346 Sum_probs=25.6
Q ss_pred ceeEEeCCCCCcHHHHHHHHHHHcC---CCeEEec
Q 035603 228 RGYLLFGPPGTGKSTMIAAMANCLN---YDVYDLE 259 (431)
Q Consensus 228 rg~LL~GPPGtGKTsla~aiA~~l~---~~i~~l~ 259 (431)
.-++|.|+||+||||+++.++..++ .++..++
T Consensus 373 ~~I~l~G~~GsGKSTia~~La~~L~~~G~~~~~ld 407 (546)
T 2gks_A 373 FCVWLTGLPCAGKSTIAEILATMLQARGRKVTLLD 407 (546)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEC
T ss_pred eEEEccCCCCCCHHHHHHHHHHHhhhcCCeEEEEC
Confidence 4578999999999999999999875 3455444
No 416
>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}
Probab=93.00 E-value=0.04 Score=55.21 Aligned_cols=27 Identities=33% Similarity=0.454 Sum_probs=22.9
Q ss_pred CCCceeEEeCCCCCcHHHHHHHHHHHc
Q 035603 225 AWKRGYLLFGPPGTGKSTMIAAMANCL 251 (431)
Q Consensus 225 ~~~rg~LL~GPPGtGKTsla~aiA~~l 251 (431)
+...-+.|.||.|||||||.++||+.+
T Consensus 45 ~~Ge~~~llGpsGsGKSTLLr~iaGl~ 71 (390)
T 3gd7_A 45 SPGQRVGLLGRTGSGKSTLLSAFLRLL 71 (390)
T ss_dssp CTTCEEEEEESTTSSHHHHHHHHHTCS
T ss_pred cCCCEEEEECCCCChHHHHHHHHhCCC
Confidence 334568899999999999999999865
No 417
>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}
Probab=92.99 E-value=0.077 Score=53.94 Aligned_cols=29 Identities=34% Similarity=0.471 Sum_probs=24.7
Q ss_pred ceeEEeCCCCCcHHHHHHHHHHHcCCCeE
Q 035603 228 RGYLLFGPPGTGKSTMIAAMANCLNYDVY 256 (431)
Q Consensus 228 rg~LL~GPPGtGKTsla~aiA~~l~~~i~ 256 (431)
.-+.|.||+|||||+|++.||+....+.-
T Consensus 158 q~~~IvG~sGsGKSTLl~~Iag~~~~~~G 186 (438)
T 2dpy_A 158 QRMGLFAGSGVGKSVLLGMMARYTRADVI 186 (438)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHSCCSEE
T ss_pred CEEEEECCCCCCHHHHHHHHhcccCCCeE
Confidence 34789999999999999999999876543
No 418
>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*
Probab=92.98 E-value=0.055 Score=47.39 Aligned_cols=23 Identities=26% Similarity=0.349 Sum_probs=20.3
Q ss_pred ceeEEeCCCCCcHHHHHHHHHHH
Q 035603 228 RGYLLFGPPGTGKSTMIAAMANC 250 (431)
Q Consensus 228 rg~LL~GPPGtGKTsla~aiA~~ 250 (431)
.-+++.|+||+|||+|+.++.+.
T Consensus 23 ~ki~v~G~~~~GKSsli~~l~~~ 45 (188)
T 1zd9_A 23 MELTLVGLQYSGKTTFVNVIASG 45 (188)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred cEEEEECCCCCCHHHHHHHHHcC
Confidence 35899999999999999999863
No 419
>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*
Probab=92.97 E-value=0.055 Score=47.31 Aligned_cols=23 Identities=13% Similarity=0.252 Sum_probs=20.4
Q ss_pred ceeEEeCCCCCcHHHHHHHHHHH
Q 035603 228 RGYLLFGPPGTGKSTMIAAMANC 250 (431)
Q Consensus 228 rg~LL~GPPGtGKTsla~aiA~~ 250 (431)
.-+++.|++|+|||+|+.++.+.
T Consensus 21 ~ki~v~G~~~~GKSsli~~l~~~ 43 (189)
T 1z06_A 21 FKIIVIGDSNVGKTCLTYRFCAG 43 (189)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHHcC
Confidence 46899999999999999999863
No 420
>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*
Probab=92.97 E-value=0.054 Score=47.87 Aligned_cols=23 Identities=22% Similarity=0.502 Sum_probs=20.7
Q ss_pred ceeEEeCCCCCcHHHHHHHHHHH
Q 035603 228 RGYLLFGPPGTGKSTMIAAMANC 250 (431)
Q Consensus 228 rg~LL~GPPGtGKTsla~aiA~~ 250 (431)
.-+++.|+||+|||+|+.++.+.
T Consensus 9 ~ki~v~G~~~~GKSsli~~l~~~ 31 (207)
T 1vg8_A 9 LKVIILGDSGVGKTSLMNQYVNK 31 (207)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHS
T ss_pred eEEEEECcCCCCHHHHHHHHHcC
Confidence 46899999999999999999874
No 421
>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A
Probab=92.97 E-value=0.041 Score=47.45 Aligned_cols=23 Identities=22% Similarity=0.302 Sum_probs=20.5
Q ss_pred ceeEEeCCCCCcHHHHHHHHHHH
Q 035603 228 RGYLLFGPPGTGKSTMIAAMANC 250 (431)
Q Consensus 228 rg~LL~GPPGtGKTsla~aiA~~ 250 (431)
--+++.|+||+|||+|+..+.+.
T Consensus 8 ~ki~~vG~~~vGKTsli~~l~~~ 30 (178)
T 2iwr_A 8 LRLGVLGDARSGKSSLIHRFLTG 30 (178)
T ss_dssp EEEEEECCGGGCHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHhC
Confidence 35899999999999999999874
No 422
>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*
Probab=92.92 E-value=0.057 Score=47.35 Aligned_cols=23 Identities=26% Similarity=0.580 Sum_probs=20.3
Q ss_pred ceeEEeCCCCCcHHHHHHHHHHH
Q 035603 228 RGYLLFGPPGTGKSTMIAAMANC 250 (431)
Q Consensus 228 rg~LL~GPPGtGKTsla~aiA~~ 250 (431)
--+++.|++|+|||+|+.++.+.
T Consensus 22 ~ki~v~G~~~~GKSsli~~l~~~ 44 (191)
T 2a5j_A 22 FKYIIIGDTGVGKSCLLLQFTDK 44 (191)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHS
T ss_pred eEEEEECcCCCCHHHHHHHHhcC
Confidence 35899999999999999999863
No 423
>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0
Probab=92.91 E-value=0.057 Score=47.38 Aligned_cols=22 Identities=18% Similarity=0.241 Sum_probs=19.6
Q ss_pred eeEEeCCCCCcHHHHHHHHHHH
Q 035603 229 GYLLFGPPGTGKSTMIAAMANC 250 (431)
Q Consensus 229 g~LL~GPPGtGKTsla~aiA~~ 250 (431)
-++|.|++|+|||+|+..+.+.
T Consensus 22 ki~ivG~~~vGKSsL~~~~~~~ 43 (184)
T 3ihw_A 22 KVGIVGNLSSGKSALVHRYLTG 43 (184)
T ss_dssp EEEEECCTTSCHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5899999999999999888764
No 424
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=92.90 E-value=0.026 Score=50.26 Aligned_cols=25 Identities=20% Similarity=0.252 Sum_probs=20.5
Q ss_pred CceeEEeCCCCCcHHHHHHHHHHHc
Q 035603 227 KRGYLLFGPPGTGKSTMIAAMANCL 251 (431)
Q Consensus 227 ~rg~LL~GPPGtGKTsla~aiA~~l 251 (431)
..-+.|.||+|+|||||++++++..
T Consensus 26 ~~~v~lvG~~g~GKSTLl~~l~g~~ 50 (210)
T 1pui_A 26 GIEVAFAGRSNAGKSSALNTLTNQK 50 (210)
T ss_dssp SEEEEEEECTTSSHHHHHTTTCCC-
T ss_pred CcEEEEECCCCCCHHHHHHHHhCCC
Confidence 3457899999999999999987543
No 425
>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}
Probab=92.89 E-value=0.048 Score=55.79 Aligned_cols=28 Identities=14% Similarity=0.216 Sum_probs=23.8
Q ss_pred CCCCceeEEeCCCCCcHHHHHHHHHHHc
Q 035603 224 KAWKRGYLLFGPPGTGKSTMIAAMANCL 251 (431)
Q Consensus 224 ~~~~rg~LL~GPPGtGKTsla~aiA~~l 251 (431)
+....-+.|.||.|+|||||++.|++.+
T Consensus 135 i~~Ge~v~IvGpnGsGKSTLlr~L~Gl~ 162 (460)
T 2npi_A 135 NFEGPRVVIVGGSQTGKTSLSRTLCSYA 162 (460)
T ss_dssp SSSCCCEEEEESTTSSHHHHHHHHHHTT
T ss_pred eCCCCEEEEECCCCCCHHHHHHHHhCcc
Confidence 4445568899999999999999999975
No 426
>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=92.89 E-value=0.051 Score=47.71 Aligned_cols=23 Identities=22% Similarity=0.398 Sum_probs=20.7
Q ss_pred eeEEeCCCCCcHHHHHHHHHHHc
Q 035603 229 GYLLFGPPGTGKSTMIAAMANCL 251 (431)
Q Consensus 229 g~LL~GPPGtGKTsla~aiA~~l 251 (431)
-++|.|++|+|||+|+.++.+.-
T Consensus 25 ki~v~G~~~~GKSsli~~l~~~~ 47 (191)
T 3dz8_A 25 KLLIIGNSSVGKTSFLFRYADDT 47 (191)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHT
T ss_pred EEEEECCCCcCHHHHHHHHhcCC
Confidence 58999999999999999998754
No 427
>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8
Probab=92.89 E-value=0.05 Score=47.84 Aligned_cols=23 Identities=26% Similarity=0.449 Sum_probs=20.5
Q ss_pred ceeEEeCCCCCcHHHHHHHHHHH
Q 035603 228 RGYLLFGPPGTGKSTMIAAMANC 250 (431)
Q Consensus 228 rg~LL~GPPGtGKTsla~aiA~~ 250 (431)
.-+++.|++|+|||+|+.++.+.
T Consensus 24 ~ki~vvG~~~~GKSsli~~l~~~ 46 (192)
T 2fg5_A 24 LKVCLLGDTGVGKSSIVCRFVQD 46 (192)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHC
T ss_pred eEEEEECcCCCCHHHHHHHHhcC
Confidence 46899999999999999999864
No 428
>3hjn_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynth nucleotide-binding, transferase, structural genomics; HET: ADP TYD; 2.10A {Thermotoga maritima}
Probab=92.88 E-value=0.15 Score=45.84 Aligned_cols=32 Identities=31% Similarity=0.273 Sum_probs=25.7
Q ss_pred eEEeCCCCCcHHHHHHHHHHHc---CCCeEEeccc
Q 035603 230 YLLFGPPGTGKSTMIAAMANCL---NYDVYDLELT 261 (431)
Q Consensus 230 ~LL~GPPGtGKTsla~aiA~~l---~~~i~~l~~~ 261 (431)
|.|.|+.|+||||.++.++..| |.+++...-.
T Consensus 3 I~~EG~DGsGKsTq~~~L~~~L~~~g~~v~~treP 37 (197)
T 3hjn_A 3 ITFEGIDGSGKSTQIQLLAQYLEKRGKKVILKREP 37 (197)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEESS
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHCCCcEEEEECC
Confidence 4578999999999999999876 6677655443
No 429
>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*
Probab=92.86 E-value=0.059 Score=47.34 Aligned_cols=23 Identities=17% Similarity=0.343 Sum_probs=20.7
Q ss_pred ceeEEeCCCCCcHHHHHHHHHHH
Q 035603 228 RGYLLFGPPGTGKSTMIAAMANC 250 (431)
Q Consensus 228 rg~LL~GPPGtGKTsla~aiA~~ 250 (431)
--+++.|+||+|||+|+.++.+.
T Consensus 24 ~ki~~vG~~~~GKSsl~~~l~~~ 46 (194)
T 3reg_A 24 LKIVVVGDGAVGKTCLLLAFSKG 46 (194)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEECcCCCCHHHHHHHHhcC
Confidence 46899999999999999999874
No 430
>1dek_A Deoxynucleoside monophosphate kinase; transferase, phosphotransferase; HET: DGP; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1 PDB: 1del_A*
Probab=92.85 E-value=0.045 Score=51.12 Aligned_cols=27 Identities=19% Similarity=0.084 Sum_probs=24.0
Q ss_pred eeEEeCCCCCcHHHHHHHHHHHcCCCe
Q 035603 229 GYLLFGPPGTGKSTMIAAMANCLNYDV 255 (431)
Q Consensus 229 g~LL~GPPGtGKTsla~aiA~~l~~~i 255 (431)
-+.|+|+||||||++++.++..+|+++
T Consensus 3 ~i~ltG~~~sGK~tv~~~l~~~~g~~~ 29 (241)
T 1dek_A 3 LIFLSGVKRSGKDTTADFIMSNYSAVK 29 (241)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHSCEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHhcCCeE
Confidence 367999999999999999999888765
No 431
>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=92.84 E-value=0.058 Score=47.90 Aligned_cols=23 Identities=30% Similarity=0.499 Sum_probs=20.5
Q ss_pred ceeEEeCCCCCcHHHHHHHHHHH
Q 035603 228 RGYLLFGPPGTGKSTMIAAMANC 250 (431)
Q Consensus 228 rg~LL~GPPGtGKTsla~aiA~~ 250 (431)
.-+++.|+||+|||+|+.++.+.
T Consensus 21 ~~i~v~G~~~~GKSsli~~l~~~ 43 (213)
T 3cph_A 21 MKILLIGDSGVGKSCLLVRFVED 43 (213)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHC
T ss_pred eEEEEECCCCCCHHHHHHHHHhC
Confidence 46899999999999999999863
No 432
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=92.82 E-value=0.059 Score=49.41 Aligned_cols=29 Identities=28% Similarity=0.413 Sum_probs=23.2
Q ss_pred eeEEeCCCCCcHHHHHHHHHHHcCCCeEEe
Q 035603 229 GYLLFGPPGTGKSTMIAAMANCLNYDVYDL 258 (431)
Q Consensus 229 g~LL~GPPGtGKTsla~aiA~~l~~~i~~l 258 (431)
-+-|.||.|+||||+++.|++. +..+...
T Consensus 22 ~i~i~G~~GsGKSTl~~~L~~~-~g~v~~~ 50 (230)
T 2vp4_A 22 TVLIEGNIGSGKTTYLNHFEKY-KNDICLL 50 (230)
T ss_dssp EEEEECSTTSCHHHHHHTTGGG-TTTEEEE
T ss_pred EEEEECCCCCCHHHHHHHHHhc-cCCeEEE
Confidence 4678899999999999999987 4444433
No 433
>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8
Probab=92.82 E-value=0.05 Score=48.13 Aligned_cols=23 Identities=22% Similarity=0.361 Sum_probs=20.5
Q ss_pred ceeEEeCCCCCcHHHHHHHHHHH
Q 035603 228 RGYLLFGPPGTGKSTMIAAMANC 250 (431)
Q Consensus 228 rg~LL~GPPGtGKTsla~aiA~~ 250 (431)
.-+++.|+||+|||+|+.++.+.
T Consensus 9 ~ki~v~G~~~~GKSsli~~l~~~ 31 (203)
T 1zbd_A 9 FKILIIGNSSVGKTSFLFRYADD 31 (203)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTC
T ss_pred eEEEEECCCCCCHHHHHHHHhcC
Confidence 46899999999999999999864
No 434
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=92.79 E-value=0.054 Score=54.83 Aligned_cols=21 Identities=38% Similarity=0.593 Sum_probs=19.6
Q ss_pred eEEeCCCCCcHHHHHHHHHHH
Q 035603 230 YLLFGPPGTGKSTMIAAMANC 250 (431)
Q Consensus 230 ~LL~GPPGtGKTsla~aiA~~ 250 (431)
+.|.||+|+|||||+++|++.
T Consensus 45 vaLvG~nGaGKSTLln~L~G~ 65 (427)
T 2qag_B 45 ILCVGETGLGKSTLMDTLFNT 65 (427)
T ss_dssp EEEECSTTSSSHHHHHHHHTS
T ss_pred EEEECCCCCCHHHHHHHHhCc
Confidence 779999999999999999975
No 435
>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}
Probab=92.78 E-value=0.042 Score=51.74 Aligned_cols=23 Identities=30% Similarity=0.563 Sum_probs=20.6
Q ss_pred ceeEEeCCCCCcHHHHHHHHHHH
Q 035603 228 RGYLLFGPPGTGKSTMIAAMANC 250 (431)
Q Consensus 228 rg~LL~GPPGtGKTsla~aiA~~ 250 (431)
.-+.|.|+||+|||||+.++.+.
T Consensus 4 ~~i~lvG~~g~GKTTL~n~l~g~ 26 (271)
T 3k53_A 4 KTVALVGNPNVGKTTIFNALTGL 26 (271)
T ss_dssp EEEEEEECSSSSHHHHHHHHHTT
T ss_pred eEEEEECCCCCCHHHHHHHHhCC
Confidence 46889999999999999999864
No 436
>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*
Probab=92.78 E-value=0.053 Score=48.12 Aligned_cols=23 Identities=30% Similarity=0.499 Sum_probs=20.4
Q ss_pred ceeEEeCCCCCcHHHHHHHHHHH
Q 035603 228 RGYLLFGPPGTGKSTMIAAMANC 250 (431)
Q Consensus 228 rg~LL~GPPGtGKTsla~aiA~~ 250 (431)
.-++|.|+||+|||+|+.++.+.
T Consensus 9 ~ki~v~G~~~~GKSsli~~l~~~ 31 (206)
T 2bcg_Y 9 FKLLLIGNSGVGKSCLLLRFSDD 31 (206)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHC
T ss_pred eEEEEECCCCCCHHHHHHHHhcC
Confidence 46899999999999999999863
No 437
>3vr4_A V-type sodium ATPase catalytic subunit A; V-ATPase, rotary motor, P-loop, hydrolas ATPase, ATP binding; HET: MSE B3P; 2.17A {Enterococcus hirae} PDB: 3vr3_A* 3vr2_A* 3vr5_A 3vr6_A*
Probab=92.76 E-value=0.32 Score=50.78 Aligned_cols=46 Identities=22% Similarity=0.301 Sum_probs=31.6
Q ss_pred eeEEeCCCCCcHHHHHHHHHHHcCCCeEEecccCcCChHHHHHHHHH
Q 035603 229 GYLLFGPPGTGKSTMIAAMANCLNYDVYDLELTSVENNNELRSLLVD 275 (431)
Q Consensus 229 g~LL~GPPGtGKTsla~aiA~~l~~~i~~l~~~~~~~~~~l~~l~~~ 275 (431)
-+++.||+|+|||.|+..||+..+.+++.+-+-. +...++.+++.+
T Consensus 234 r~~Ifgg~g~GKT~L~~~ia~~~~~~v~V~~~iG-ER~~Ev~e~~~~ 279 (600)
T 3vr4_A 234 AAAVPGPFGAGKTVVQHQIAKWSDVDLVVYVGCG-ERGNEMTDVVNE 279 (600)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHSSCSEEEEEEEE-ECHHHHHHHHHH
T ss_pred EEeeecCCCccHHHHHHHHHhccCCCEEEEEEec-ccHHHHHHHHHH
Confidence 3789999999999999999998777654432222 123445555443
No 438
>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*
Probab=92.75 E-value=0.055 Score=46.73 Aligned_cols=22 Identities=23% Similarity=0.407 Sum_probs=19.9
Q ss_pred ceeEEeCCCCCcHHHHHHHHHH
Q 035603 228 RGYLLFGPPGTGKSTMIAAMAN 249 (431)
Q Consensus 228 rg~LL~GPPGtGKTsla~aiA~ 249 (431)
.-++|.|+||+|||+|+.++.+
T Consensus 7 ~ki~~~G~~~~GKSsli~~l~~ 28 (181)
T 3t5g_A 7 RKIAILGYRSVGKSSLTIQFVE 28 (181)
T ss_dssp EEEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEEECcCCCCHHHHHHHHHc
Confidence 4589999999999999999985
No 439
>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*
Probab=92.70 E-value=0.077 Score=46.25 Aligned_cols=24 Identities=29% Similarity=0.473 Sum_probs=20.9
Q ss_pred CceeEEeCCCCCcHHHHHHHHHHH
Q 035603 227 KRGYLLFGPPGTGKSTMIAAMANC 250 (431)
Q Consensus 227 ~rg~LL~GPPGtGKTsla~aiA~~ 250 (431)
..-+++.|+||+|||+|+.++.+.
T Consensus 16 ~~ki~ivG~~~vGKSsL~~~l~~~ 39 (181)
T 1fzq_A 16 EVRILLLGLDNAGKTTLLKQLASE 39 (181)
T ss_dssp CEEEEEEESTTSSHHHHHHHHCCS
T ss_pred ceEEEEECCCCCCHHHHHHHHhcC
Confidence 346899999999999999999864
No 440
>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A
Probab=92.69 E-value=0.056 Score=47.07 Aligned_cols=23 Identities=26% Similarity=0.404 Sum_probs=20.6
Q ss_pred ceeEEeCCCCCcHHHHHHHHHHH
Q 035603 228 RGYLLFGPPGTGKSTMIAAMANC 250 (431)
Q Consensus 228 rg~LL~GPPGtGKTsla~aiA~~ 250 (431)
.-+++.|++|+|||||+.++.+.
T Consensus 24 ~~i~v~G~~~~GKSsli~~l~~~ 46 (195)
T 3pqc_A 24 GEVAFVGRSNVGKSSLLNALFNR 46 (195)
T ss_dssp CEEEEEEBTTSSHHHHHHHHHTS
T ss_pred eEEEEECCCCCCHHHHHHHHHcC
Confidence 46899999999999999999864
No 441
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=92.64 E-value=0.045 Score=54.15 Aligned_cols=25 Identities=32% Similarity=0.509 Sum_probs=22.0
Q ss_pred ceeEEeCCCCCcHHHHHHHHHHHcC
Q 035603 228 RGYLLFGPPGTGKSTMIAAMANCLN 252 (431)
Q Consensus 228 rg~LL~GPPGtGKTsla~aiA~~l~ 252 (431)
.-+.|.||||+|||||+++|++.+.
T Consensus 216 ~~~~lvG~sG~GKSTLln~L~g~~~ 240 (358)
T 2rcn_A 216 RISIFAGQSGVGKSSLLNALLGLQN 240 (358)
T ss_dssp SEEEEECCTTSSHHHHHHHHHCCSS
T ss_pred CEEEEECCCCccHHHHHHHHhcccc
Confidence 4678999999999999999998654
No 442
>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}
Probab=92.64 E-value=0.057 Score=47.85 Aligned_cols=23 Identities=17% Similarity=0.351 Sum_probs=20.6
Q ss_pred ceeEEeCCCCCcHHHHHHHHHHH
Q 035603 228 RGYLLFGPPGTGKSTMIAAMANC 250 (431)
Q Consensus 228 rg~LL~GPPGtGKTsla~aiA~~ 250 (431)
.-++|.|+||+|||+|+.++.+.
T Consensus 25 ~ki~vvG~~~~GKSsli~~l~~~ 47 (201)
T 3oes_A 25 RKVVILGYRCVGKTSLAHQFVEG 47 (201)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCcCHHHHHHHHHhC
Confidence 45899999999999999999874
No 443
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=92.62 E-value=0.056 Score=48.78 Aligned_cols=24 Identities=25% Similarity=0.534 Sum_probs=21.4
Q ss_pred ceeEEeCCCCCcHHHHHHHHHHHc
Q 035603 228 RGYLLFGPPGTGKSTMIAAMANCL 251 (431)
Q Consensus 228 rg~LL~GPPGtGKTsla~aiA~~l 251 (431)
.-+++.|+||+|||+|+..++..+
T Consensus 39 ~~i~ivG~~gvGKTtl~~~l~~~~ 62 (226)
T 2hf9_A 39 VAFDFMGAIGSGKTLLIEKLIDNL 62 (226)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHH
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHh
Confidence 467888999999999999999875
No 444
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=92.59 E-value=0.039 Score=53.43 Aligned_cols=30 Identities=27% Similarity=0.402 Sum_probs=25.1
Q ss_pred CCCCceeEEeCCCCCcHHHHHHHHHHHcCC
Q 035603 224 KAWKRGYLLFGPPGTGKSTMIAAMANCLNY 253 (431)
Q Consensus 224 ~~~~rg~LL~GPPGtGKTsla~aiA~~l~~ 253 (431)
++...-+.|.||.|+|||||+++|++.+..
T Consensus 77 i~~Ge~vaivG~sGsGKSTLl~ll~gl~~p 106 (306)
T 3nh6_A 77 VMPGQTLALVGPSGAGKSTILRLLFRFYDI 106 (306)
T ss_dssp ECTTCEEEEESSSCHHHHHHHHHHTTSSCC
T ss_pred EcCCCEEEEECCCCchHHHHHHHHHcCCCC
Confidence 344566889999999999999999997754
No 445
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=92.58 E-value=0.11 Score=52.50 Aligned_cols=22 Identities=27% Similarity=0.499 Sum_probs=19.7
Q ss_pred eeEEeCCCCCcHHHHHHHHHHH
Q 035603 229 GYLLFGPPGTGKSTMIAAMANC 250 (431)
Q Consensus 229 g~LL~GPPGtGKTsla~aiA~~ 250 (431)
-+.|.||+|+|||||+++|++.
T Consensus 71 ~valvG~nGaGKSTLln~L~Gl 92 (413)
T 1tq4_A 71 NVAVTGETGSGKSSFINTLRGI 92 (413)
T ss_dssp EEEEEECTTSSHHHHHHHHHTC
T ss_pred EEEEECCCCCcHHHHHHHHhCC
Confidence 4668999999999999999983
No 446
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=92.57 E-value=0.047 Score=52.46 Aligned_cols=25 Identities=28% Similarity=0.429 Sum_probs=21.7
Q ss_pred ceeEEeCCCCCcHHHHHHHHHHHcC
Q 035603 228 RGYLLFGPPGTGKSTMIAAMANCLN 252 (431)
Q Consensus 228 rg~LL~GPPGtGKTsla~aiA~~l~ 252 (431)
.-+.|.||+|+|||||+++|++...
T Consensus 170 eiv~l~G~sG~GKSTll~~l~g~~~ 194 (301)
T 1u0l_A 170 KISTMAGLSGVGKSSLLNAINPGLK 194 (301)
T ss_dssp SEEEEECSTTSSHHHHHHHHSTTCC
T ss_pred CeEEEECCCCCcHHHHHHHhccccc
Confidence 4578999999999999999998654
No 447
>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=92.54 E-value=0.065 Score=46.24 Aligned_cols=24 Identities=25% Similarity=0.411 Sum_probs=20.5
Q ss_pred CCceeEEeCCCCCcHHHHHHHHHH
Q 035603 226 WKRGYLLFGPPGTGKSTMIAAMAN 249 (431)
Q Consensus 226 ~~rg~LL~GPPGtGKTsla~aiA~ 249 (431)
.+.-+++.|+||+|||+|+.++.+
T Consensus 17 ~~~~i~v~G~~~~GKssli~~l~~ 40 (183)
T 1moz_A 17 KELRILILGLDGAGKTTILYRLQI 40 (183)
T ss_dssp SCEEEEEEEETTSSHHHHHHHTCC
T ss_pred CccEEEEECCCCCCHHHHHHHHhc
Confidence 345789999999999999998863
No 448
>1ko7_A HPR kinase/phosphatase; protein kinase, phosphotransfer, protein phosphatase, dual activity, product, substrate, transferase, hydrolase; 1.95A {Staphylococcus xylosus} SCOP: c.98.2.1 c.91.1.2
Probab=92.52 E-value=0.077 Score=51.49 Aligned_cols=29 Identities=24% Similarity=0.321 Sum_probs=24.5
Q ss_pred CceeEEeCCCCCcHHHHHHHHHHHcCCCeE
Q 035603 227 KRGYLLFGPPGTGKSTMIAAMANCLNYDVY 256 (431)
Q Consensus 227 ~rg~LL~GPPGtGKTsla~aiA~~l~~~i~ 256 (431)
.+|+||.|++|+|||+++.++... |..++
T Consensus 144 g~~vl~~G~sG~GKSt~a~~l~~~-g~~lv 172 (314)
T 1ko7_A 144 GVGVLITGDSGIGKSETALELIKR-GHRLV 172 (314)
T ss_dssp TEEEEEEESTTSSHHHHHHHHHHT-TCEEE
T ss_pred CEEEEEEeCCCCCHHHHHHHHHhc-CCcee
Confidence 579999999999999999999875 55444
No 449
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=92.50 E-value=0.098 Score=51.15 Aligned_cols=25 Identities=36% Similarity=0.498 Sum_probs=21.6
Q ss_pred CceeEEeCCCCCcHHHHHHHHHHHc
Q 035603 227 KRGYLLFGPPGTGKSTMIAAMANCL 251 (431)
Q Consensus 227 ~rg~LL~GPPGtGKTsla~aiA~~l 251 (431)
..-+.+.||||+||||++.+++..+
T Consensus 56 ~~~i~i~G~~g~GKSTl~~~l~~~~ 80 (341)
T 2p67_A 56 TLRLGVTGTPGAGKSTFLEAFGMLL 80 (341)
T ss_dssp SEEEEEEECTTSCHHHHHHHHHHHH
T ss_pred CEEEEEEcCCCCCHHHHHHHHHHHH
Confidence 3457789999999999999999765
No 450
>1qhl_A Protein (cell division protein MUKB); SMC, chromosome partitioning; 2.20A {Escherichia coli} SCOP: c.37.1.12
Probab=92.50 E-value=0.029 Score=51.95 Aligned_cols=23 Identities=43% Similarity=0.482 Sum_probs=20.3
Q ss_pred EEeCCCCCcHHHHHHHHHHHcCC
Q 035603 231 LLFGPPGTGKSTMIAAMANCLNY 253 (431)
Q Consensus 231 LL~GPPGtGKTsla~aiA~~l~~ 253 (431)
.|.||.|+|||+|.++|+..+..
T Consensus 31 ~i~GpnGsGKSTll~~i~g~~~~ 53 (227)
T 1qhl_A 31 TLSGGNGAGKSTTMAAFVTALIP 53 (227)
T ss_dssp HHHSCCSHHHHHHHHHHHHHHSC
T ss_pred EEECCCCCCHHHHHHHHhccccc
Confidence 47799999999999999998753
No 451
>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8
Probab=92.49 E-value=0.061 Score=48.24 Aligned_cols=23 Identities=17% Similarity=0.333 Sum_probs=20.8
Q ss_pred ceeEEeCCCCCcHHHHHHHHHHH
Q 035603 228 RGYLLFGPPGTGKSTMIAAMANC 250 (431)
Q Consensus 228 rg~LL~GPPGtGKTsla~aiA~~ 250 (431)
.-+++.|+||+|||+|+.++.+.
T Consensus 29 ~ki~vvG~~~vGKSsLi~~l~~~ 51 (205)
T 1gwn_A 29 CKIVVVGDSQCGKTALLHVFAKD 51 (205)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHhcC
Confidence 46899999999999999999874
No 452
>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=92.49 E-value=0.061 Score=47.13 Aligned_cols=22 Identities=27% Similarity=0.587 Sum_probs=20.1
Q ss_pred ceeEEeCCCCCcHHHHHHHHHH
Q 035603 228 RGYLLFGPPGTGKSTMIAAMAN 249 (431)
Q Consensus 228 rg~LL~GPPGtGKTsla~aiA~ 249 (431)
.-+++.|+||+|||+|+.++.+
T Consensus 9 ~ki~vvG~~~~GKSsli~~l~~ 30 (199)
T 2gf0_A 9 YRVVVFGAGGVGKSSLVLRFVK 30 (199)
T ss_dssp EEEEEEECTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCcHHHHHHHHHc
Confidence 4689999999999999999987
No 453
>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*
Probab=92.48 E-value=0.063 Score=46.64 Aligned_cols=24 Identities=21% Similarity=0.396 Sum_probs=21.0
Q ss_pred CceeEEeCCCCCcHHHHHHHHHHH
Q 035603 227 KRGYLLFGPPGTGKSTMIAAMANC 250 (431)
Q Consensus 227 ~rg~LL~GPPGtGKTsla~aiA~~ 250 (431)
..-+++.|+||+|||+|+.++.+.
T Consensus 18 ~~~i~v~G~~~~GKssl~~~l~~~ 41 (186)
T 1ksh_A 18 ELRLLMLGLDNAGKTTILKKFNGE 41 (186)
T ss_dssp CEEEEEECSTTSSHHHHHHHHTTC
T ss_pred eeEEEEECCCCCCHHHHHHHHhcC
Confidence 456899999999999999999853
No 454
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=92.47 E-value=0.058 Score=53.50 Aligned_cols=27 Identities=30% Similarity=0.353 Sum_probs=22.9
Q ss_pred CCceeEEeCCCCCcHHHHHHHHHHHcC
Q 035603 226 WKRGYLLFGPPGTGKSTMIAAMANCLN 252 (431)
Q Consensus 226 ~~rg~LL~GPPGtGKTsla~aiA~~l~ 252 (431)
...-+-|.||.|+|||||+++|++.+.
T Consensus 53 ~Gei~~IiGpnGaGKSTLlr~i~GL~~ 79 (366)
T 3tui_C 53 AGQIYGVIGASGAGKSTLIRCVNLLER 79 (366)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHTSSC
T ss_pred CCCEEEEEcCCCchHHHHHHHHhcCCC
Confidence 344578999999999999999998664
No 455
>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A*
Probab=92.43 E-value=0.041 Score=47.68 Aligned_cols=23 Identities=26% Similarity=0.456 Sum_probs=10.1
Q ss_pred CceeEEeCCCCCcHHHHHHHHHH
Q 035603 227 KRGYLLFGPPGTGKSTMIAAMAN 249 (431)
Q Consensus 227 ~rg~LL~GPPGtGKTsla~aiA~ 249 (431)
..-+++.|+||+|||+|+.++.+
T Consensus 8 ~~ki~v~G~~~~GKssl~~~l~~ 30 (183)
T 2fu5_C 8 LFKLLLIGDSGVGKTCVLFRFSE 30 (183)
T ss_dssp EEEEEEECCCCC-----------
T ss_pred ceEEEEECCCCCCHHHHHHHHHh
Confidence 34689999999999999999875
No 456
>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2
Probab=92.38 E-value=0.073 Score=47.51 Aligned_cols=24 Identities=21% Similarity=0.389 Sum_probs=20.7
Q ss_pred CceeEEeCCCCCcHHHHHHHHHHH
Q 035603 227 KRGYLLFGPPGTGKSTMIAAMANC 250 (431)
Q Consensus 227 ~rg~LL~GPPGtGKTsla~aiA~~ 250 (431)
..-+++.|++|+|||+|+.++.+.
T Consensus 7 ~~ki~vvG~~~~GKTsli~~l~~~ 30 (214)
T 2fh5_B 7 QRAVLFVGLCDSGKTLLFVRLLTG 30 (214)
T ss_dssp -CEEEEECSTTSSHHHHHHHHHHS
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 346899999999999999999874
No 457
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}
Probab=92.37 E-value=0.059 Score=49.44 Aligned_cols=23 Identities=26% Similarity=0.336 Sum_probs=20.7
Q ss_pred ceeEEeCCCCCcHHHHHHHHHHH
Q 035603 228 RGYLLFGPPGTGKSTMIAAMANC 250 (431)
Q Consensus 228 rg~LL~GPPGtGKTsla~aiA~~ 250 (431)
.-++|.|+||+|||||+.+|.+.
T Consensus 30 ~~i~lvG~~g~GKStlin~l~g~ 52 (239)
T 3lxx_A 30 LRIVLVGKTGAGKSATGNSILGR 52 (239)
T ss_dssp EEEEEECCTTSSHHHHHHHHHTS
T ss_pred eEEEEECCCCCCHHHHHHHHcCC
Confidence 46899999999999999999864
No 458
>1knx_A Probable HPR(Ser) kinase/phosphatase; HPR kinase, HPR kinase/phosphatase, HPRK/P, P-loop, walker A BOX, catabolite repression; 2.50A {Mycoplasma pneumoniae} SCOP: c.98.2.1 c.91.1.2
Probab=92.36 E-value=0.062 Score=52.08 Aligned_cols=30 Identities=33% Similarity=0.328 Sum_probs=24.5
Q ss_pred CceeEEeCCCCCcHHHHHHHHHHHcCCCeEE
Q 035603 227 KRGYLLFGPPGTGKSTMIAAMANCLNYDVYD 257 (431)
Q Consensus 227 ~rg~LL~GPPGtGKTsla~aiA~~l~~~i~~ 257 (431)
.+|+||.||+|+|||++|.++.. -|..++.
T Consensus 147 g~gvli~G~sG~GKStlal~l~~-~G~~lv~ 176 (312)
T 1knx_A 147 GVGVLLTGRSGIGKSECALDLIN-KNHLFVG 176 (312)
T ss_dssp TEEEEEEESSSSSHHHHHHHHHT-TTCEEEE
T ss_pred CEEEEEEcCCCCCHHHHHHHHHH-cCCEEEe
Confidence 58999999999999999998865 4655543
No 459
>3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_A*
Probab=92.31 E-value=0.067 Score=48.25 Aligned_cols=25 Identities=32% Similarity=0.541 Sum_probs=21.8
Q ss_pred eeEEeCCCCCcHHHHHHHHHHHcCC
Q 035603 229 GYLLFGPPGTGKSTMIAAMANCLNY 253 (431)
Q Consensus 229 g~LL~GPPGtGKTsla~aiA~~l~~ 253 (431)
-.+|+||.|+|||++..||.-.++.
T Consensus 25 ~~~I~G~NgsGKStil~ai~~~l~g 49 (203)
T 3qks_A 25 INLIIGQNGSGKSSLLDAILVGLYW 49 (203)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHHT
T ss_pred eEEEEcCCCCCHHHHHHHHHHHhcC
Confidence 4689999999999999999877754
No 460
>1t6n_A Probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; HET: FLC; 1.94A {Homo sapiens} SCOP: c.37.1.19
Probab=92.25 E-value=0.092 Score=47.24 Aligned_cols=60 Identities=15% Similarity=0.059 Sum_probs=35.2
Q ss_pred CCCCccccccChhhHHHHHHHHHHHHhCHHHHHHhCCC---CCceeEEeCCCCCcHHHHHHHHHHH
Q 035603 188 HPATFDTLAMASKKKEAIKKDLIKFTEGKEYYAKIGKA---WKRGYLLFGPPGTGKSTMIAAMANC 250 (431)
Q Consensus 188 ~p~~f~~l~g~~~~k~~i~~~l~~~~~~~~~~~~~g~~---~~rg~LL~GPPGtGKTsla~aiA~~ 250 (431)
+..+|+++...+++.+.+.+. -+..+..+....++ ..+.+++.+|+|+|||..+-..+-.
T Consensus 12 ~~~~f~~~~l~~~l~~~l~~~---g~~~~~~~Q~~~i~~~~~~~~~li~~~TGsGKT~~~~~~~~~ 74 (220)
T 1t6n_A 12 HSSGFRDFLLKPELLRAIVDC---GFEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLATLQ 74 (220)
T ss_dssp --CCSTTSCCCHHHHHHHHHT---TCCCCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHH
T ss_pred cCCCHhhcCCCHHHHHHHHHC---CCCCCCHHHHHHHHHHhCCCCEEEECCCCCchhhhhhHHHHH
Confidence 446789998888887777541 01111122211111 1356999999999999876655443
No 461
>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=92.24 E-value=0.068 Score=47.79 Aligned_cols=23 Identities=22% Similarity=0.447 Sum_probs=20.5
Q ss_pred ceeEEeCCCCCcHHHHHHHHHHH
Q 035603 228 RGYLLFGPPGTGKSTMIAAMANC 250 (431)
Q Consensus 228 rg~LL~GPPGtGKTsla~aiA~~ 250 (431)
.-++|.|+||+|||+|+.++.+.
T Consensus 27 ~ki~lvG~~~vGKSsLi~~l~~~ 49 (201)
T 2ew1_A 27 FKIVLIGNAGVGKTCLVRRFTQG 49 (201)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHS
T ss_pred eEEEEECcCCCCHHHHHHHHHhC
Confidence 46899999999999999999864
No 462
>3ch4_B Pmkase, phosphomevalonate kinase; parallel beta-sheet with the strand order 23145, walker A motif, cholesterol biosynthesis, lipid synthesis; 1.76A {Homo sapiens}
Probab=92.22 E-value=0.11 Score=47.22 Aligned_cols=38 Identities=26% Similarity=0.249 Sum_probs=28.7
Q ss_pred CCCceeEEeCCCCCcHHHHHHHHHHHcCCC-eEEecccC
Q 035603 225 AWKRGYLLFGPPGTGKSTMIAAMANCLNYD-VYDLELTS 262 (431)
Q Consensus 225 ~~~rg~LL~GPPGtGKTsla~aiA~~l~~~-i~~l~~~~ 262 (431)
.++.-|++.|.||+||++++..+.+.+|.. +..+.+++
T Consensus 9 ~~~~II~itGk~~SGKd~va~~l~~~~g~~~~~vv~msD 47 (202)
T 3ch4_B 9 APRLVLLFSGKRKSGKDFVTEALQSRLGADVCAVLRLSG 47 (202)
T ss_dssp CCSEEEEEEECTTSSHHHHHHHHHHHHCTTTEEEECTHH
T ss_pred CCCEEEEEECCCCCChHHHHHHHHHHcCCCCceEEEccH
Confidence 456788999999999999999999877643 33344443
No 463
>2qe7_A ATP synthase subunit alpha; blockage of ATP hydrolysis, F1-ATPase, single analysis, thermoalkaliphilic, hydrolase; 3.06A {Bacillus SP} PDB: 1sky_B
Probab=92.21 E-value=0.27 Score=50.50 Aligned_cols=48 Identities=21% Similarity=0.303 Sum_probs=33.0
Q ss_pred eEEeCCCCCcHHHH-HHHHHHHcCCCeEEecccCcCChHHHHHHHHHhh
Q 035603 230 YLLFGPPGTGKSTM-IAAMANCLNYDVYDLELTSVENNNELRSLLVDIS 277 (431)
Q Consensus 230 ~LL~GPPGtGKTsl-a~aiA~~l~~~i~~l~~~~~~~~~~l~~l~~~~~ 277 (431)
.++.|++|||||+| ...|++..+.+++.+=..--+...++.++.....
T Consensus 165 ~~Ifg~~g~GKT~Lal~~I~~~~~~dv~~V~~~iGeR~~Ev~~~~~~~~ 213 (502)
T 2qe7_A 165 ELIIGDRQTGKTTIAIDTIINQKGQDVICIYVAIGQKQSTVAGVVETLR 213 (502)
T ss_dssp CEEEECSSSCHHHHHHHHHHGGGSCSEEEEEEEESCCHHHHHHHHHHHH
T ss_pred EEEECCCCCCchHHHHHHHHHhhcCCcEEEEEECCCcchHHHHHHHHHh
Confidence 79999999999999 5799999888865433222234455555554433
No 464
>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A*
Probab=92.18 E-value=0.084 Score=46.65 Aligned_cols=22 Identities=36% Similarity=0.561 Sum_probs=19.8
Q ss_pred eeEEeCCCCCcHHHHHHHHHHH
Q 035603 229 GYLLFGPPGTGKSTMIAAMANC 250 (431)
Q Consensus 229 g~LL~GPPGtGKTsla~aiA~~ 250 (431)
-++|.|+||+|||+|+..+.+.
T Consensus 8 kv~lvG~~~vGKSsL~~~~~~~ 29 (192)
T 2cjw_A 8 RVVLIGEQGVGKSTLANIFAGV 29 (192)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5889999999999999999864
No 465
>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*
Probab=92.17 E-value=0.069 Score=47.12 Aligned_cols=23 Identities=22% Similarity=0.372 Sum_probs=20.0
Q ss_pred CceeEEeCCCCCcHHHHHHHHHH
Q 035603 227 KRGYLLFGPPGTGKSTMIAAMAN 249 (431)
Q Consensus 227 ~rg~LL~GPPGtGKTsla~aiA~ 249 (431)
..-+++.|+||+|||+|+.++..
T Consensus 29 ~~ki~v~G~~~vGKSsLi~~l~~ 51 (192)
T 2b6h_A 29 QMRILMVGLDAAGKTTILYKLKL 51 (192)
T ss_dssp CEEEEEEESTTSSHHHHHHHHCS
T ss_pred ccEEEEECCCCCCHHHHHHHHHh
Confidence 34689999999999999999864
No 466
>1xx6_A Thymidine kinase; NESG, northeast structural genomics consortium, protein STRU initiative, PSI, structural genomics, DNA synthesis; HET: ADP; 2.00A {Clostridium acetobutylicum} SCOP: c.37.1.24 g.39.1.14
Probab=92.17 E-value=0.13 Score=46.23 Aligned_cols=32 Identities=16% Similarity=0.142 Sum_probs=25.1
Q ss_pred ceeEEeCCCCCcHHHHHHHHHHHc---CCCeEEec
Q 035603 228 RGYLLFGPPGTGKSTMIAAMANCL---NYDVYDLE 259 (431)
Q Consensus 228 rg~LL~GPPGtGKTsla~aiA~~l---~~~i~~l~ 259 (431)
+-++++||+|+|||+.+..+|..+ |..++.+.
T Consensus 9 ~i~v~~G~mgsGKTT~ll~~a~r~~~~g~kV~v~k 43 (191)
T 1xx6_A 9 WVEVIVGPMYSGKSEELIRRIRRAKIAKQKIQVFK 43 (191)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred EEEEEECCCCCcHHHHHHHHHHHHHHCCCEEEEEE
Confidence 456789999999999888887754 67776664
No 467
>1qde_A EIF4A, translation initiation factor 4A; DEAD box protein family, gene regulation; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 1qva_A
Probab=92.08 E-value=0.073 Score=48.02 Aligned_cols=59 Identities=15% Similarity=0.064 Sum_probs=35.0
Q ss_pred CCccccccChhhHHHHHHHHHHHHhCHHHHHHhCC---CCCceeEEeCCCCCcHHHH-HHHHHHHc
Q 035603 190 ATFDTLAMASKKKEAIKKDLIKFTEGKEYYAKIGK---AWKRGYLLFGPPGTGKSTM-IAAMANCL 251 (431)
Q Consensus 190 ~~f~~l~g~~~~k~~i~~~l~~~~~~~~~~~~~g~---~~~rg~LL~GPPGtGKTsl-a~aiA~~l 251 (431)
.+|+++...+.+.+.+.+.- +..+..+....+ -..+.+++.+|+|+|||.. +-++...+
T Consensus 14 ~~f~~l~l~~~l~~~l~~~g---~~~~~~~Q~~~i~~~~~~~~~lv~~pTGsGKT~~~~~~~l~~l 76 (224)
T 1qde_A 14 YKFDDMELDENLLRGVFGYG---FEEPSAIQQRAIMPIIEGHDVLAQAQSGTGKTGTFSIAALQRI 76 (224)
T ss_dssp CCGGGGTCCHHHHHHHHHHT---CCSCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHHC
T ss_pred CChhhcCCCHHHHHHHHHCC---CCCCcHHHHHHHHHHhcCCCEEEECCCCCcHHHHHHHHHHHHH
Confidence 67999988888877765421 111111111111 1135799999999999986 34444443
No 468
>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8
Probab=92.08 E-value=0.074 Score=46.61 Aligned_cols=23 Identities=22% Similarity=0.353 Sum_probs=20.6
Q ss_pred ceeEEeCCCCCcHHHHHHHHHHH
Q 035603 228 RGYLLFGPPGTGKSTMIAAMANC 250 (431)
Q Consensus 228 rg~LL~GPPGtGKTsla~aiA~~ 250 (431)
.-+++.|++|+|||+|+.++.+.
T Consensus 19 ~ki~v~G~~~~GKssli~~l~~~ 41 (194)
T 2atx_A 19 LKCVVVGDGAVGKTCLLMSYAND 41 (194)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHhcC
Confidence 35899999999999999999875
No 469
>2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A
Probab=92.06 E-value=0.12 Score=51.17 Aligned_cols=22 Identities=14% Similarity=0.356 Sum_probs=19.7
Q ss_pred eeEEeCCCCCcHHHHHHHHHHH
Q 035603 229 GYLLFGPPGTGKSTMIAAMANC 250 (431)
Q Consensus 229 g~LL~GPPGtGKTsla~aiA~~ 250 (431)
-+.|.|+||+|||||..++++.
T Consensus 181 ~V~lvG~~naGKSTLln~L~~~ 202 (364)
T 2qtf_A 181 SIGIVGYTNSGKTSLFNSLTGL 202 (364)
T ss_dssp EEEEECBTTSSHHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHHCC
Confidence 3779999999999999999864
No 470
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=92.00 E-value=0.091 Score=50.52 Aligned_cols=24 Identities=29% Similarity=0.505 Sum_probs=20.9
Q ss_pred ceeEEeCCCCCcHHHHHHHHHHHcC
Q 035603 228 RGYLLFGPPGTGKSTMIAAMANCLN 252 (431)
Q Consensus 228 rg~LL~GPPGtGKTsla~aiA~~l~ 252 (431)
.-+.|.||+|+|||||+++|+ .+.
T Consensus 166 ~i~~l~G~sG~GKSTLln~l~-~~~ 189 (302)
T 2yv5_A 166 FICILAGPSGVGKSSILSRLT-GEE 189 (302)
T ss_dssp CEEEEECSTTSSHHHHHHHHH-SCC
T ss_pred cEEEEECCCCCCHHHHHHHHH-Hhh
Confidence 457899999999999999999 654
No 471
>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*
Probab=91.97 E-value=0.06 Score=47.84 Aligned_cols=22 Identities=18% Similarity=0.468 Sum_probs=19.4
Q ss_pred ceeEEeCCCCCcHHHHHHHHHH
Q 035603 228 RGYLLFGPPGTGKSTMIAAMAN 249 (431)
Q Consensus 228 rg~LL~GPPGtGKTsla~aiA~ 249 (431)
.-+++.|+||+|||+|+.++.+
T Consensus 26 ~ki~lvG~~~vGKSsLi~~l~~ 47 (198)
T 1f6b_A 26 GKLVFLGLDNAGKTTLLHMLKD 47 (198)
T ss_dssp EEEEEEEETTSSHHHHHHHHSC
T ss_pred cEEEEECCCCCCHHHHHHHHhc
Confidence 3588999999999999999974
No 472
>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=91.97 E-value=0.074 Score=46.38 Aligned_cols=23 Identities=17% Similarity=0.394 Sum_probs=20.6
Q ss_pred CceeEEeCCCCCcHHHHHHHHHH
Q 035603 227 KRGYLLFGPPGTGKSTMIAAMAN 249 (431)
Q Consensus 227 ~rg~LL~GPPGtGKTsla~aiA~ 249 (431)
..-+++.|++|+|||+|+.++.+
T Consensus 16 ~~~i~v~G~~~~GKssl~~~l~~ 38 (187)
T 1zj6_A 16 EHKVIIVGLDNAGKTTILYQFSM 38 (187)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHT
T ss_pred ccEEEEECCCCCCHHHHHHHHhc
Confidence 45689999999999999999984
No 473
>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=91.95 E-value=0.077 Score=47.29 Aligned_cols=23 Identities=13% Similarity=0.372 Sum_probs=20.6
Q ss_pred ceeEEeCCCCCcHHHHHHHHHHH
Q 035603 228 RGYLLFGPPGTGKSTMIAAMANC 250 (431)
Q Consensus 228 rg~LL~GPPGtGKTsla~aiA~~ 250 (431)
.-+++.|++|+|||+|+.++.+.
T Consensus 26 ~ki~vvG~~~~GKSsli~~l~~~ 48 (207)
T 2fv8_A 26 KKLVVVGDGACGKTCLLIVFSKD 48 (207)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHS
T ss_pred cEEEEECcCCCCHHHHHHHHhcC
Confidence 46899999999999999999873
No 474
>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens}
Probab=91.92 E-value=0.085 Score=46.49 Aligned_cols=22 Identities=18% Similarity=0.424 Sum_probs=19.7
Q ss_pred ceeEEeCCCCCcHHHHHHHHHH
Q 035603 228 RGYLLFGPPGTGKSTMIAAMAN 249 (431)
Q Consensus 228 rg~LL~GPPGtGKTsla~aiA~ 249 (431)
--+++.|++|+|||+|+.++.+
T Consensus 21 ~ki~~~G~~~~GKssl~~~l~~ 42 (201)
T 2q3h_A 21 VKCVLVGDGAVGKTSLVVSYTT 42 (201)
T ss_dssp EEEEEECSTTSSHHHHHHHHHC
T ss_pred eEEEEECCCCCCHHHHHHHHHh
Confidence 4589999999999999999875
No 475
>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*
Probab=91.90 E-value=0.059 Score=46.83 Aligned_cols=23 Identities=17% Similarity=0.351 Sum_probs=20.3
Q ss_pred ceeEEeCCCCCcHHHHHHHHHHH
Q 035603 228 RGYLLFGPPGTGKSTMIAAMANC 250 (431)
Q Consensus 228 rg~LL~GPPGtGKTsla~aiA~~ 250 (431)
.-+++.|++|+|||+|+.++.+.
T Consensus 22 ~~i~v~G~~~~GKSsli~~l~~~ 44 (181)
T 2h17_A 22 HKVIIVGLDNAGKTTILYQFSMN 44 (181)
T ss_dssp EEEEEEEETTSSHHHHHHHHHTT
T ss_pred eEEEEECCCCCCHHHHHHHHhcC
Confidence 35899999999999999999863
No 476
>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens}
Probab=91.82 E-value=0.077 Score=47.05 Aligned_cols=23 Identities=30% Similarity=0.576 Sum_probs=20.2
Q ss_pred CceeEEeCCCCCcHHHHHHHHHH
Q 035603 227 KRGYLLFGPPGTGKSTMIAAMAN 249 (431)
Q Consensus 227 ~rg~LL~GPPGtGKTsla~aiA~ 249 (431)
..-+++.|++|+|||+|+.++.+
T Consensus 25 ~~ki~v~G~~~~GKSsLi~~l~~ 47 (200)
T 2o52_A 25 LFKFLVIGSAGTGKSCLLHQFIE 47 (200)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHC
T ss_pred ceEEEEECcCCCCHHHHHHHHHh
Confidence 34689999999999999999874
No 477
>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ...
Probab=91.82 E-value=0.082 Score=46.85 Aligned_cols=23 Identities=13% Similarity=0.387 Sum_probs=20.6
Q ss_pred ceeEEeCCCCCcHHHHHHHHHHH
Q 035603 228 RGYLLFGPPGTGKSTMIAAMANC 250 (431)
Q Consensus 228 rg~LL~GPPGtGKTsla~aiA~~ 250 (431)
.-+++.|+||+|||+|+.++.+.
T Consensus 26 ~ki~vvG~~~~GKSsli~~l~~~ 48 (201)
T 2gco_A 26 KKLVIVGDGACGKTCLLIVFSKD 48 (201)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHhC
Confidence 46899999999999999999874
No 478
>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}
Probab=91.82 E-value=0.07 Score=47.33 Aligned_cols=22 Identities=32% Similarity=0.527 Sum_probs=19.4
Q ss_pred ceeEEeCCCCCcHHHHHHHHHH
Q 035603 228 RGYLLFGPPGTGKSTMIAAMAN 249 (431)
Q Consensus 228 rg~LL~GPPGtGKTsla~aiA~ 249 (431)
.-++|.|+||+|||+|+..+++
T Consensus 24 ~ki~vvG~~~vGKSsLi~~l~~ 45 (195)
T 3cbq_A 24 FKVMLVGESGVGKSTLAGTFGG 45 (195)
T ss_dssp EEEEEECSTTSSHHHHHHHTCC
T ss_pred EEEEEECCCCCCHHHHHHHHHh
Confidence 3589999999999999999864
No 479
>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}
Probab=91.77 E-value=0.085 Score=46.38 Aligned_cols=22 Identities=18% Similarity=0.560 Sum_probs=19.6
Q ss_pred ceeEEeCCCCCcHHHHHHHHHH
Q 035603 228 RGYLLFGPPGTGKSTMIAAMAN 249 (431)
Q Consensus 228 rg~LL~GPPGtGKTsla~aiA~ 249 (431)
.-+++.|++|+|||+|+.++.+
T Consensus 27 ~ki~vvG~~~~GKSsLi~~l~~ 48 (192)
T 2il1_A 27 LQVIIIGSRGVGKTSLMERFTD 48 (192)
T ss_dssp EEEEEECSTTSSHHHHHHHHCC
T ss_pred eEEEEECCCCCCHHHHHHHHhc
Confidence 3589999999999999999964
No 480
>3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae}
Probab=91.76 E-value=0.094 Score=47.36 Aligned_cols=23 Identities=26% Similarity=0.501 Sum_probs=20.5
Q ss_pred ceeEEeCCCCCcHHHHHHHHHHH
Q 035603 228 RGYLLFGPPGTGKSTMIAAMANC 250 (431)
Q Consensus 228 rg~LL~GPPGtGKTsla~aiA~~ 250 (431)
.-++|.|++|+|||+|+.++.+.
T Consensus 14 ~ki~v~G~~~vGKSsli~~l~~~ 36 (223)
T 3cpj_B 14 FKIVLIGDSGVGKSNLLSRFTKN 36 (223)
T ss_dssp EEEEEESCTTSSHHHHHHHHHHC
T ss_pred eEEEEECcCCCCHHHHHHHHhcC
Confidence 46899999999999999999874
No 481
>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens}
Probab=91.71 E-value=0.085 Score=46.88 Aligned_cols=23 Identities=17% Similarity=0.329 Sum_probs=20.3
Q ss_pred ceeEEeCCCCCcHHHHHHHHHHH
Q 035603 228 RGYLLFGPPGTGKSTMIAAMANC 250 (431)
Q Consensus 228 rg~LL~GPPGtGKTsla~aiA~~ 250 (431)
.-+++.|+||+|||+|+.++.+.
T Consensus 30 ~ki~vvG~~~vGKSsli~~l~~~ 52 (201)
T 2hup_A 30 FKLVLVGDASVGKTCVVQRFKTG 52 (201)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHS
T ss_pred eEEEEECcCCCCHHHHHHHHhhC
Confidence 45899999999999999999753
No 482
>2gxq_A Heat resistant RNA dependent ATPase; RNA helicase, atomic resolution, AMP complex, ribosome biogenesis, thermophilic, hydrolase; HET: AMP; 1.20A {Thermus thermophilus HB27} PDB: 2gxs_A* 2gxu_A 3mwj_A 3mwk_A* 3mwl_A* 3nbf_A* 3nej_A
Probab=91.70 E-value=0.053 Score=48.17 Aligned_cols=24 Identities=25% Similarity=0.340 Sum_probs=18.1
Q ss_pred ceeEEeCCCCCcHHHHH-HHHHHHc
Q 035603 228 RGYLLFGPPGTGKSTMI-AAMANCL 251 (431)
Q Consensus 228 rg~LL~GPPGtGKTsla-~aiA~~l 251 (431)
+.+++.+|+|+|||..+ .++...+
T Consensus 39 ~~~li~~~TGsGKT~~~~~~~~~~l 63 (207)
T 2gxq_A 39 KDLIGQARTGTGKTLAFALPIAERL 63 (207)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHHHC
T ss_pred CCEEEECCCCChHHHHHHHHHHHHH
Confidence 57999999999999864 3444443
No 483
>4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927}
Probab=91.68 E-value=0.088 Score=46.09 Aligned_cols=23 Identities=26% Similarity=0.411 Sum_probs=20.2
Q ss_pred CceeEEeCCCCCcHHHHHHHHHH
Q 035603 227 KRGYLLFGPPGTGKSTMIAAMAN 249 (431)
Q Consensus 227 ~rg~LL~GPPGtGKTsla~aiA~ 249 (431)
..-++|.|++|+|||+|+.++.+
T Consensus 17 ~~ki~v~G~~~~GKSsl~~~l~~ 39 (199)
T 4bas_A 17 KLQVVMCGLDNSGKTTIINQVKP 39 (199)
T ss_dssp EEEEEEECCTTSCHHHHHHHHSC
T ss_pred CcEEEEECCCCCCHHHHHHHHhc
Confidence 34689999999999999999865
No 484
>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana}
Probab=91.65 E-value=0.087 Score=46.90 Aligned_cols=23 Identities=17% Similarity=0.270 Sum_probs=20.3
Q ss_pred ceeEEeCCCCCcHHHHHHHHHHH
Q 035603 228 RGYLLFGPPGTGKSTMIAAMANC 250 (431)
Q Consensus 228 rg~LL~GPPGtGKTsla~aiA~~ 250 (431)
--+++.|+||+|||+|+.++.+.
T Consensus 10 ~ki~i~G~~~~GKTsli~~l~~~ 32 (212)
T 2j0v_A 10 IKCVTVGDGAVGKTCMLICYTSN 32 (212)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHhcC
Confidence 45899999999999999999864
No 485
>1fx0_A ATP synthase alpha chain; latent ATPase, thermal stability, potential tentoxin binding hydrolase; 3.20A {Spinacia oleracea} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1kmh_A*
Probab=91.61 E-value=0.25 Score=50.81 Aligned_cols=48 Identities=15% Similarity=0.241 Sum_probs=33.1
Q ss_pred eEEeCCCCCcHHHH-HHHHHHHcCCCeEEecccCcCChHHHHHHHHHhh
Q 035603 230 YLLFGPPGTGKSTM-IAAMANCLNYDVYDLELTSVENNNELRSLLVDIS 277 (431)
Q Consensus 230 ~LL~GPPGtGKTsl-a~aiA~~l~~~i~~l~~~~~~~~~~l~~l~~~~~ 277 (431)
.++.|++|||||+| ...|++..+.+++.+=..--+...++.++.....
T Consensus 166 ~~Ifg~~g~GKT~Lal~~I~~~~~~dv~~V~~~iGeR~~Ev~~~~~~~~ 214 (507)
T 1fx0_A 166 ELIIGDRQTGKTAVATDTILNQQGQNVICVYVAIGQKASSVAQVVTNFQ 214 (507)
T ss_dssp CBEEESSSSSHHHHHHHHHHTCCTTTCEEEEEEESCCHHHHHHHHHHTG
T ss_pred EEEecCCCCCccHHHHHHHHHhhcCCcEEEEEEcCCCchHHHHHHHHHH
Confidence 79999999999999 5799998887754332222234555666555443
No 486
>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum}
Probab=91.51 E-value=0.073 Score=48.35 Aligned_cols=23 Identities=26% Similarity=0.577 Sum_probs=20.3
Q ss_pred ceeEEeCCCCCcHHHHHHHHHHH
Q 035603 228 RGYLLFGPPGTGKSTMIAAMANC 250 (431)
Q Consensus 228 rg~LL~GPPGtGKTsla~aiA~~ 250 (431)
.-++|.|+||+|||+|+.++.+.
T Consensus 30 ~kI~vvG~~~vGKSsLin~l~~~ 52 (228)
T 2qu8_A 30 KTIILSGAPNVGKSSFMNIVSRA 52 (228)
T ss_dssp EEEEEECSTTSSHHHHHHHHTTT
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 46899999999999999999763
No 487
>2c61_A A-type ATP synthase non-catalytic subunit B; hydrolase, H+ ATPase, A1AO, ATP synthesis, hydrogen ION transport, ION transport; 1.5A {Methanosarcina mazei GO1} PDB: 3dsr_A* 3b2q_A* 2rkw_A* 3eiu_A*
Probab=91.51 E-value=0.3 Score=49.87 Aligned_cols=24 Identities=13% Similarity=0.216 Sum_probs=21.7
Q ss_pred eEEeCCCCCcHHHHHHHHHHHcCC
Q 035603 230 YLLFGPPGTGKSTMIAAMANCLNY 253 (431)
Q Consensus 230 ~LL~GPPGtGKTsla~aiA~~l~~ 253 (431)
+++.|++|+|||+|+..||+....
T Consensus 155 ~~Ifgg~G~GKt~Ll~~Ia~~~~~ 178 (469)
T 2c61_A 155 LPIFSASGLPHNEIALQIARQASV 178 (469)
T ss_dssp CCEEECTTSCHHHHHHHHHHHCBC
T ss_pred EEEECCCCCCHHHHHHHHHHHHhh
Confidence 667899999999999999998875
No 488
>1hv8_A Putative ATP-dependent RNA helicase MJ0669; RNA-binding protein, ATPase, RNA binding protein; 3.00A {Methanocaldococcus jannaschii} SCOP: c.37.1.19 c.37.1.19
Probab=91.47 E-value=0.16 Score=48.86 Aligned_cols=58 Identities=16% Similarity=0.062 Sum_probs=34.0
Q ss_pred CCccccccChhhHHHHHHHHHHHHhCHHHHHHhCCC----CCceeEEeCCCCCcHHHHHHHHHHH
Q 035603 190 ATFDTLAMASKKKEAIKKDLIKFTEGKEYYAKIGKA----WKRGYLLFGPPGTGKSTMIAAMANC 250 (431)
Q Consensus 190 ~~f~~l~g~~~~k~~i~~~l~~~~~~~~~~~~~g~~----~~rg~LL~GPPGtGKTsla~aiA~~ 250 (431)
.+|+++...+.+.+.+.+. -+..+..+....++ -++.+++.+|+|+|||..+-..+-.
T Consensus 6 ~~f~~~~l~~~~~~~l~~~---g~~~~~~~Q~~~i~~~~~~~~~~l~~~~TGsGKT~~~~~~~~~ 67 (367)
T 1hv8_A 6 MNFNELNLSDNILNAIRNK---GFEKPTDIQMKVIPLFLNDEYNIVAQARTGSGKTASFAIPLIE 67 (367)
T ss_dssp CCGGGSSCCHHHHHHHHHH---TCCSCCHHHHHHHHHHHHTCSEEEEECCSSSSHHHHHHHHHHH
T ss_pred CchhhcCCCHHHHHHHHHc---CCCCCCHHHHHHHHHHhCCCCCEEEECCCCChHHHHHHHHHHH
Confidence 4677887777777666541 11111112111111 1368999999999999976654443
No 489
>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A*
Probab=91.35 E-value=0.1 Score=51.64 Aligned_cols=23 Identities=35% Similarity=0.559 Sum_probs=20.0
Q ss_pred eeEEeCCCCCcHHHHHHHHHHHc
Q 035603 229 GYLLFGPPGTGKSTMIAAMANCL 251 (431)
Q Consensus 229 g~LL~GPPGtGKTsla~aiA~~l 251 (431)
-.+|+||.|+|||||..||+..+
T Consensus 25 ~~~i~G~NGaGKTTll~ai~~al 47 (365)
T 3qf7_A 25 ITVVEGPNGAGKSSLFEAISFAL 47 (365)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHh
Confidence 45799999999999999998654
No 490
>3a1s_A Iron(II) transport protein B; FEOB, iron transporter, small GTPase, G protein, GDI; HET: GDP; 1.50A {Thermotoga maritima} PDB: 3a1t_A* 3a1u_A* 3a1v_A* 3a1w_A
Probab=91.34 E-value=0.086 Score=49.44 Aligned_cols=22 Identities=27% Similarity=0.460 Sum_probs=19.9
Q ss_pred ceeEEeCCCCCcHHHHHHHHHH
Q 035603 228 RGYLLFGPPGTGKSTMIAAMAN 249 (431)
Q Consensus 228 rg~LL~GPPGtGKTsla~aiA~ 249 (431)
.-++|.|+||+|||||+.++.+
T Consensus 6 ~kI~lvG~~nvGKTsL~n~l~g 27 (258)
T 3a1s_A 6 VKVALAGCPNVGKTSLFNALTG 27 (258)
T ss_dssp EEEEEECCTTSSHHHHHHHHHT
T ss_pred eEEEEECCCCCCHHHHHHHHHC
Confidence 3588999999999999999986
No 491
>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A*
Probab=91.32 E-value=0.11 Score=46.69 Aligned_cols=23 Identities=26% Similarity=0.391 Sum_probs=20.5
Q ss_pred ceeEEeCCCCCcHHHHHHHHHHH
Q 035603 228 RGYLLFGPPGTGKSTMIAAMANC 250 (431)
Q Consensus 228 rg~LL~GPPGtGKTsla~aiA~~ 250 (431)
--+++.|++|+|||+|+..+.+.
T Consensus 28 ~ki~vvG~~~vGKSsL~~~l~~~ 50 (214)
T 3q3j_B 28 CKLVLVGDVQCGKTAMLQVLAKD 50 (214)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEEECcCCCCHHHHHHHHhcC
Confidence 46899999999999999999864
No 492
>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A*
Probab=91.32 E-value=0.14 Score=52.68 Aligned_cols=25 Identities=36% Similarity=0.361 Sum_probs=22.3
Q ss_pred ceeEEeCCCCCcHHHHHHHHHHHcC
Q 035603 228 RGYLLFGPPGTGKSTMIAAMANCLN 252 (431)
Q Consensus 228 rg~LL~GPPGtGKTsla~aiA~~l~ 252 (431)
..+.|.||.|+|||||.++|++.+.
T Consensus 30 e~~~liG~nGsGKSTLl~~l~Gl~~ 54 (483)
T 3euj_A 30 LVTTLSGGNGAGKSTTMAGFVTALI 54 (483)
T ss_dssp SEEEEECCTTSSHHHHHHHHHHHHC
T ss_pred ceEEEECCCCCcHHHHHHHHhcCCC
Confidence 4678999999999999999999764
No 493
>3oaa_A ATP synthase subunit alpha; rossmann fold, hydrolase, hydrolase-transport PROT complex; HET: ANP ADP; 3.26A {Escherichia coli DH1} PDB: 2a7u_A
Probab=91.31 E-value=0.31 Score=50.15 Aligned_cols=47 Identities=17% Similarity=0.261 Sum_probs=30.9
Q ss_pred eeEEeCCCCCcHHHH-HHHHHHHcCCCeEEecccCcCChHHHHHHHHH
Q 035603 229 GYLLFGPPGTGKSTM-IAAMANCLNYDVYDLELTSVENNNELRSLLVD 275 (431)
Q Consensus 229 g~LL~GPPGtGKTsl-a~aiA~~l~~~i~~l~~~~~~~~~~l~~l~~~ 275 (431)
-.++.|++|||||++ ...|++..+.+++.+-..--+...++.++...
T Consensus 164 R~~Ifg~~g~GKT~l~l~~I~n~~~~dv~~V~~~IGeR~~ev~e~~~~ 211 (513)
T 3oaa_A 164 RELIIGDRQTGKTALAIDAIINQRDSGIKCIYVAIGQKASTISNVVRK 211 (513)
T ss_dssp BCEEEESSSSSHHHHHHHHHHTTSSSSCEEEEEEESCCHHHHHHHHHH
T ss_pred EEEeecCCCCCcchHHHHHHHhhccCCceEEEEEecCChHHHHHHHHH
Confidence 379999999999999 57999887777543322222334445554443
No 494
>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens}
Probab=91.30 E-value=0.093 Score=47.12 Aligned_cols=22 Identities=27% Similarity=0.548 Sum_probs=19.8
Q ss_pred ceeEEeCCCCCcHHHHHHHHHH
Q 035603 228 RGYLLFGPPGTGKSTMIAAMAN 249 (431)
Q Consensus 228 rg~LL~GPPGtGKTsla~aiA~ 249 (431)
.-+++.|++|+|||+|+.++.+
T Consensus 35 ~ki~vvG~~~vGKSsli~~l~~ 56 (214)
T 2j1l_A 35 VKVVLVGDGGCGKTSLLMVFAD 56 (214)
T ss_dssp EEEEEEECTTSSHHHHHHHHHC
T ss_pred EEEEEECcCCCCHHHHHHHHHc
Confidence 4689999999999999999974
No 495
>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*
Probab=91.27 E-value=0.1 Score=46.49 Aligned_cols=24 Identities=13% Similarity=0.278 Sum_probs=20.8
Q ss_pred CceeEEeCCCCCcHHHHHHHHHHH
Q 035603 227 KRGYLLFGPPGTGKSTMIAAMANC 250 (431)
Q Consensus 227 ~rg~LL~GPPGtGKTsla~aiA~~ 250 (431)
.--+++.|+||+|||+|+.++.+.
T Consensus 30 ~~ki~vvG~~~~GKSsLi~~l~~~ 53 (204)
T 4gzl_A 30 AIKCVVVGDGAVGKTCLLISYTTN 53 (204)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHS
T ss_pred eEEEEEECcCCCCHHHHHHHHHhC
Confidence 346899999999999999998863
No 496
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=91.20 E-value=0.1 Score=54.39 Aligned_cols=27 Identities=37% Similarity=0.366 Sum_probs=23.1
Q ss_pred CCceeEEeCCCCCcHHHHHHHHHHHcC
Q 035603 226 WKRGYLLFGPPGTGKSTMIAAMANCLN 252 (431)
Q Consensus 226 ~~rg~LL~GPPGtGKTsla~aiA~~l~ 252 (431)
...-+.|.||.|+|||||+++|++.+.
T Consensus 46 ~Ge~~~LvG~NGaGKSTLlk~l~Gl~~ 72 (538)
T 1yqt_A 46 EGMVVGIVGPNGTGKSTAVKILAGQLI 72 (538)
T ss_dssp TTSEEEEECCTTSSHHHHHHHHHTSSC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 345688999999999999999998653
No 497
>3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila}
Probab=91.16 E-value=0.093 Score=49.17 Aligned_cols=22 Identities=41% Similarity=0.697 Sum_probs=19.9
Q ss_pred eeEEeCCCCCcHHHHHHHHHHH
Q 035603 229 GYLLFGPPGTGKSTMIAAMANC 250 (431)
Q Consensus 229 g~LL~GPPGtGKTsla~aiA~~ 250 (431)
-+.|.|+||+|||||..++.+.
T Consensus 3 kI~lvG~~n~GKSTL~n~L~g~ 24 (256)
T 3iby_A 3 HALLIGNPNCGKTTLFNALTNA 24 (256)
T ss_dssp EEEEEESTTSSHHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHHCC
Confidence 5789999999999999999864
No 498
>3b1v_A Ferrous iron uptake transporter protein B; G protein, iron transport, GTPase, transmembrane, potassium; HET: GGM; 1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A* 3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A*
Probab=91.16 E-value=0.11 Score=49.28 Aligned_cols=22 Identities=23% Similarity=0.528 Sum_probs=20.0
Q ss_pred eeEEeCCCCCcHHHHHHHHHHH
Q 035603 229 GYLLFGPPGTGKSTMIAAMANC 250 (431)
Q Consensus 229 g~LL~GPPGtGKTsla~aiA~~ 250 (431)
-+.|.|+||+|||||..++.+.
T Consensus 5 kI~lvG~~nvGKSTL~n~L~g~ 26 (272)
T 3b1v_A 5 EIALIGNPNSGKTSLFNLITGH 26 (272)
T ss_dssp EEEEECCTTSSHHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHHCC
Confidence 5789999999999999999863
No 499
>2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C
Probab=90.99 E-value=0.052 Score=47.90 Aligned_cols=22 Identities=23% Similarity=0.363 Sum_probs=4.3
Q ss_pred eeEEeCCCCCcHHHHHHHHHHH
Q 035603 229 GYLLFGPPGTGKSTMIAAMANC 250 (431)
Q Consensus 229 g~LL~GPPGtGKTsla~aiA~~ 250 (431)
-+++.|++|+|||+|+.++.+.
T Consensus 22 ~i~v~G~~~~GKssli~~l~~~ 43 (208)
T 2yc2_C 22 KVAVVGEATVGKSALISMFTSK 43 (208)
T ss_dssp EEEEC-----------------
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 6899999999999999998764
No 500
>3geh_A MNME, tRNA modification GTPase MNME; G protein, U34, GTP-binding, HYDR magnesium, metal-binding, nucleotide-binding, potassium, TR processing; HET: GDP FON; 3.20A {Nostoc SP}
Probab=90.97 E-value=0.21 Score=51.00 Aligned_cols=22 Identities=27% Similarity=0.536 Sum_probs=20.1
Q ss_pred eeEEeCCCCCcHHHHHHHHHHH
Q 035603 229 GYLLFGPPGTGKSTMIAAMANC 250 (431)
Q Consensus 229 g~LL~GPPGtGKTsla~aiA~~ 250 (431)
-+.|.|+||+|||||..++.+.
T Consensus 226 kV~ivG~~nvGKSSLln~L~~~ 247 (462)
T 3geh_A 226 KVAIVGRPNVGKSSLLNAWSQS 247 (462)
T ss_dssp EEEEEECTTSSHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHhCC
Confidence 3899999999999999999875
Done!