BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 035605
(131 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2WT9|A Chain A, Acinetobacter Baumanii Nicotinamidase Pyrazinamidease
pdb|2WT9|B Chain B, Acinetobacter Baumanii Nicotinamidase Pyrazinamidease
Length = 235
Score = 30.8 bits (68), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 19/63 (30%), Positives = 31/63 (49%), Gaps = 4/63 (6%)
Query: 43 NIETCQFLAKQLFHTRLASIPNRVDAFWKELDGLKQFLKNRELEMNLDNAGLAALFGVEC 102
NI T Q + ++ FH + S ++A + GL +LK R ++ + G+A F C
Sbjct: 125 NIPTAQLIIRKGFHAHIDSYSAFMEADHTTMTGLTGYLKERGID-TVYVVGIATDF---C 180
Query: 103 FAW 105
AW
Sbjct: 181 VAW 183
>pdb|2WTA|A Chain A, Acinetobacter Baumanii Nicotinamidase Pyrazinamidease
Length = 213
Score = 28.1 bits (61), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 19/74 (25%), Positives = 35/74 (47%), Gaps = 4/74 (5%)
Query: 43 NIETCQFLAKQLFHTRLASIPNRVDAFWKELDGLKQFLKNRELEMNLDNAGLAALFGVEC 102
NI T Q + ++ FH + S ++A + GL +LK R ++ + G+A F C
Sbjct: 102 NIPTAQLIIRKGFHAHIDSYSAFMEADHTTMTGLTGYLKERGID-TVYVVGIATDF---C 157
Query: 103 FAWFCGGEIIGRGF 116
+ + + +GF
Sbjct: 158 XVAWTALDAVKQGF 171
>pdb|2F9Y|B Chain B, The Crystal Structure Of The Carboxyltransferase Subunit
Of Acc From Escherichia Coli
Length = 304
Score = 27.3 bits (59), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 15/34 (44%), Positives = 18/34 (52%), Gaps = 3/34 (8%)
Query: 57 TRLASIPNRVDAFWKELDGLKQFLKNRELEMNLD 90
TR ASIP + W + D Q L ELE NL+
Sbjct: 14 TRKASIP---EGVWTKCDSCGQVLYRAELERNLE 44
>pdb|1ZZ6|A Chain A, Crystal Structure Of Apo-hppe
pdb|1ZZ6|B Chain B, Crystal Structure Of Apo-hppe
pdb|1ZZ7|A Chain A, Crystal Structure Of Feii Hppe In Complex With Substrate
Form 1
pdb|1ZZ7|B Chain B, Crystal Structure Of Feii Hppe In Complex With Substrate
Form 1
pdb|1ZZ8|A Chain A, Crystal Structure Of Feii Hppe In Complex With Substrate
Form 2
pdb|1ZZ8|B Chain B, Crystal Structure Of Feii Hppe In Complex With Substrate
Form 2
pdb|1ZZ8|C Chain C, Crystal Structure Of Feii Hppe In Complex With Substrate
Form 2
pdb|1ZZ9|A Chain A, Crystal Structure Of Feii Hppe
pdb|1ZZ9|B Chain B, Crystal Structure Of Feii Hppe
pdb|1ZZ9|C Chain C, Crystal Structure Of Feii Hppe
pdb|1ZZB|A Chain A, Crystal Structure Of Coii Hppe In Complex With Substrate
pdb|1ZZB|B Chain B, Crystal Structure Of Coii Hppe In Complex With Substrate
pdb|1ZZC|A Chain A, Crystal Structure Of Coii Hppe In Complex With Tris Buffer
pdb|1ZZC|B Chain B, Crystal Structure Of Coii Hppe In Complex With Tris Buffer
pdb|2BNM|A Chain A, The Structure Of Hydroxypropylphosphonic Acid Epoxidase
From S. Wedmorenis.
pdb|2BNM|B Chain B, The Structure Of Hydroxypropylphosphonic Acid Epoxidase
From S. Wedmorenis.
pdb|2BNN|A Chain A, The Structure Of Hydroxypropylphosphonic Acid Epoxidase
From S. Wedmorenis In Complex With Fosfomycin
pdb|2BNN|B Chain B, The Structure Of Hydroxypropylphosphonic Acid Epoxidase
From S. Wedmorenis In Complex With Fosfomycin
pdb|2BNO|A Chain A, The Structure Of Hydroxypropylphosphonic Acid Epoxidase
From S. Wedmorenis.
pdb|2BNO|B Chain B, The Structure Of Hydroxypropylphosphonic Acid Epoxidase
From S. Wedmorenis.
pdb|3SCF|A Chain A, Fe(Ii)-Hppe With S-Hpp And No
pdb|3SCF|B Chain B, Fe(Ii)-Hppe With S-Hpp And No
pdb|3SCF|C Chain C, Fe(Ii)-Hppe With S-Hpp And No
pdb|3SCG|A Chain A, Fe(Ii)-Hppe With R-Hpp
pdb|3SCG|B Chain B, Fe(Ii)-Hppe With R-Hpp
pdb|3SCG|C Chain C, Fe(Ii)-Hppe With R-Hpp
Length = 198
Score = 26.6 bits (57), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 17/47 (36%), Positives = 26/47 (55%), Gaps = 4/47 (8%)
Query: 75 GLKQFLKNRELEMNLDNAGLAALFG--VECFAWFCGGEIIGRGFTIT 119
G + LK+R ++ +D+A LA+L G E A + GE G T+T
Sbjct: 10 GFAELLKDRREQVKMDHAALASLLGETPETVAAWENGE--GGELTLT 54
>pdb|3K1H|A Chain A, Crystal Structure Of Hp1076 From H.Pylori
Length = 158
Score = 26.2 bits (56), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 12/25 (48%), Positives = 17/25 (68%), Gaps = 2/25 (8%)
Query: 35 KQHIKDPPNIETCQFLAKQLFHTRL 59
KQ +++ +E CQFLA LF T+L
Sbjct: 63 KQELREI--VENCQFLASPLFDTQL 85
>pdb|3NKS|A Chain A, Structure Of Human Protoporphyrinogen Ix Oxidase
Length = 477
Score = 26.2 bits (56), Expect = 6.0, Method: Composition-based stats.
Identities = 13/49 (26%), Positives = 20/49 (40%)
Query: 54 LFHTRLASIPNRVDAFWKELDGLKQFLKNRELEMNLDNAGLAALFGVEC 102
L H IP W++L+ +QFL L + L A + +C
Sbjct: 411 LVHLHKNCIPQYTLGHWQKLESARQFLTAHRLPLTLAGASYEGVAVNDC 459
>pdb|3K1I|C Chain C, Crystal Strcture Of Flis-Hp1076 Complex In H. Pylori
pdb|3K1I|D Chain D, Crystal Strcture Of Flis-Hp1076 Complex In H. Pylori
Length = 178
Score = 25.8 bits (55), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 10/16 (62%), Positives = 12/16 (75%)
Query: 44 IETCQFLAKQLFHTRL 59
+E CQFLA LF T+L
Sbjct: 90 VENCQFLASPLFDTQL 105
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.324 0.140 0.427
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,911,942
Number of Sequences: 62578
Number of extensions: 148908
Number of successful extensions: 473
Number of sequences better than 100.0: 11
Number of HSP's better than 100.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 467
Number of HSP's gapped (non-prelim): 11
length of query: 131
length of database: 14,973,337
effective HSP length: 88
effective length of query: 43
effective length of database: 9,466,473
effective search space: 407058339
effective search space used: 407058339
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 46 (22.3 bits)