BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 035605
(131 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q5RFH0|ATP5L_PONAB ATP synthase subunit g, mitochondrial OS=Pongo abelii GN=ATP5L PE=3
SV=1
Length = 103
Score = 33.9 bits (76), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 23/79 (29%), Positives = 37/79 (46%), Gaps = 7/79 (8%)
Query: 50 LAKQLFHTRLASIPNRVDAFWKELDGLKQFLKNREL----EMNLDNAGLAALFGVECFAW 105
LA ++ ++ +P + + GLK+ + + + ++ + A L L E W
Sbjct: 27 LATFWYYAKVELVPPTPAEIPRAIQGLKKIVNSAQTGSFKQLTVKEAVLNGLVATEVLMW 86
Query: 106 FCGGEIIG-RGFTITGYHV 123
F GEIIG RG I GY V
Sbjct: 87 FYVGEIIGKRG--IIGYDV 103
>sp|Q28852|ATP5L_BOVIN ATP synthase subunit g, mitochondrial OS=Bos taurus GN=ATP5L PE=1
SV=3
Length = 103
Score = 32.7 bits (73), Expect = 0.67, Method: Compositional matrix adjust.
Identities = 27/84 (32%), Positives = 38/84 (45%), Gaps = 7/84 (8%)
Query: 42 PNIETCQFLAK-QLFHTRLASIPNRVDAFWKELDGLKQFLKNRELEMNLDNAGLAALFGV 100
P + T + AK +L A IP + + K ++ K ++ + A L L
Sbjct: 25 PRLATFWYYAKVELVPPTPAEIPTAIQSLKKIINSAKT---GSFKQLTVKEALLNGLVAT 81
Query: 101 ECFAWFCGGEIIG-RGFTITGYHV 123
E + WF GEIIG RG I GY V
Sbjct: 82 EVWMWFYVGEIIGKRG--IIGYDV 103
>sp|Q7S634|NNT1_NEUCR Putative nicotinamide N-methyltransferase OS=Neurospora crassa
(strain ATCC 24698 / 74-OR23-1A / CBS 708.71 / DSM 1257
/ FGSC 987) GN=nnt-1 PE=3 SV=1
Length = 282
Score = 32.0 bits (71), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 20/79 (25%), Positives = 34/79 (43%), Gaps = 12/79 (15%)
Query: 22 NGSAYIKQLLEDNKQHIKDP-----------PNIETCQFLAKQLFHTRLASIPNRVDAFW 70
NG+ I Q E++ + +KD P++ AK++ T P+ VD W
Sbjct: 68 NGAVIISQYFEEHPEEVKDRTVLEIGAAAGLPSLVAAVLGAKKVVVTDFPD-PDIVDVMW 126
Query: 71 KELDGLKQFLKNRELEMNL 89
K + G +RE + N+
Sbjct: 127 KNIRGCPMLAVDREEDRNI 145
>sp|O74424|NU211_SCHPO Nucleoporin nup211 OS=Schizosaccharomyces pombe (strain 972 / ATCC
24843) GN=nup211 PE=1 SV=1
Length = 1837
Score = 30.8 bits (68), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 23/78 (29%), Positives = 37/78 (47%), Gaps = 9/78 (11%)
Query: 34 NKQHIKDPPNIE----TCQFLAK--QLFHTRLASIPNRVDAFWKELDGLKQFLKN--REL 85
NK DP +E C+ L K Q T+L D F ++++ L + ++N +E+
Sbjct: 1344 NKYERVDPTQLEELKKNCEALEKEKQELETKLQETAKETDTFKQQVNSLNEEVENLKKEV 1403
Query: 86 EM-NLDNAGLAALFGVEC 102
E N N LAA + +C
Sbjct: 1404 EQANTKNTRLAAAWNEKC 1421
>sp|Q6ZQA0|NBEL2_MOUSE Neurobeachin-like protein 2 OS=Mus musculus GN=Nbeal2 PE=2 SV=2
Length = 2742
Score = 29.6 bits (65), Expect = 5.9, Method: Composition-based stats.
Identities = 16/71 (22%), Positives = 29/71 (40%), Gaps = 3/71 (4%)
Query: 5 LPQLQSKASQASEFLIKNGSAYIKQLLEDNKQHIKDP---PNIETCQFLAKQLFHTRLAS 61
P Q + S + ++++GS + D+ + +P P E C L LF
Sbjct: 1394 FPTAQGRHSSSLSNVLEDGSLLEPNISGDDTSNTSNPQQTPEEELCNLLTNVLFSVTWRG 1453
Query: 62 IPNRVDAFWKE 72
+ +A W+E
Sbjct: 1454 VEGSAEAAWRE 1464
>sp|Q7K4V4|AKTP1_DROME Protein crossbronx OS=Drosophila melanogaster GN=cbx PE=2 SV=1
Length = 244
Score = 29.3 bits (64), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 15/48 (31%), Positives = 27/48 (56%), Gaps = 3/48 (6%)
Query: 11 KASQASEFLIKNGSAYIKQLLE---DNKQHIKDPPNIETCQFLAKQLF 55
K S+A+E L+ N Y+ ++ E ++K+HI D P E ++ + F
Sbjct: 148 KNSEAAELLMNNKEEYVARVQENIKESKEHIFDTPPTEDPHYIVFEKF 195
>sp|Q9I7U4|TITIN_DROME Titin OS=Drosophila melanogaster GN=sls PE=1 SV=3
Length = 18141
Score = 29.3 bits (64), Expect = 7.1, Method: Composition-based stats.
Identities = 16/66 (24%), Positives = 33/66 (50%), Gaps = 3/66 (4%)
Query: 3 SKLPQLQSKASQASEFLIKNGSAYIKQLLEDNKQHIKDPPNIETCQFLAKQLFHTRLASI 62
S++PQ +KA + +K + KQ L+D +++ PN E + + +L +
Sbjct: 12272 SEIPQGDAKAKTIGKKKVKRMN---KQELDDFVTELQEEPNQEVYETRMSDFYEVKLTEL 12328
Query: 63 PNRVDA 68
P+ +D+
Sbjct: 12329 PSEMDS 12334
>sp|B3N6U7|AKTP1_DROER Protein crossbronx OS=Drosophila erecta GN=cbx PE=3 SV=1
Length = 244
Score = 29.3 bits (64), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 14/48 (29%), Positives = 28/48 (58%), Gaps = 3/48 (6%)
Query: 11 KASQASEFLIKNGSAYIKQL---LEDNKQHIKDPPNIETCQFLAKQLF 55
K S+A+E L+ N Y+ ++ ++++K+HI D P E ++ + F
Sbjct: 148 KDSEAAELLMTNKEEYVARVQKNIKESKEHIFDTPPTEDPHYIVFEKF 195
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.324 0.140 0.427
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 48,738,697
Number of Sequences: 539616
Number of extensions: 1867140
Number of successful extensions: 4339
Number of sequences better than 100.0: 10
Number of HSP's better than 100.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 10
Number of HSP's that attempted gapping in prelim test: 4338
Number of HSP's gapped (non-prelim): 10
length of query: 131
length of database: 191,569,459
effective HSP length: 97
effective length of query: 34
effective length of database: 139,226,707
effective search space: 4733708038
effective search space used: 4733708038
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 55 (25.8 bits)