Query 035605
Match_columns 131
No_of_seqs 130 out of 197
Neff 4.3
Searched_HMMs 29240
Date Mon Mar 25 06:58:21 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/035605.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/035605hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1bh9_B TAFII28; histone fold, 30.6 53 0.0018 22.3 3.6 34 75-112 21-54 (89)
2 1ug0_A Splicing factor 4; SURP 28.3 71 0.0024 21.4 3.9 28 7-34 26-53 (88)
3 2e5z_A SFRS8 protein, splicing 27.9 49 0.0017 22.6 3.0 30 7-36 23-52 (90)
4 2dt6_A Splicing factor 3 subun 27.2 57 0.002 20.3 3.1 28 7-34 2-29 (64)
5 1l4a_A Synaptobrevin; snare, s 24.4 1.5E+02 0.0051 19.2 4.9 54 3-56 15-75 (80)
6 1x4o_A Splicing factor 4; stru 20.8 67 0.0023 20.9 2.5 28 7-34 16-43 (78)
7 1vig_A Vigilin; RNA-binding pr 20.5 19 0.00066 22.6 -0.2 11 107-117 15-25 (71)
8 3dfz_A SIRC, precorrin-2 dehyd 20.3 75 0.0026 24.4 3.1 40 43-82 146-185 (223)
9 1g2y_A Hepatocyte nuclear fact 19.6 66 0.0022 18.4 2.0 15 1-15 1-15 (32)
10 2p2r_A Poly(RC)-binding protei 19.2 17 0.00059 22.9 -0.7 11 107-117 15-25 (76)
No 1
>1bh9_B TAFII28; histone fold, tata binding protein, transcription regulation complex; HET: PMB; 2.60A {Homo sapiens} SCOP: a.22.1.3 PDB: 1bh8_B*
Probab=30.63 E-value=53 Score=22.25 Aligned_cols=34 Identities=9% Similarity=0.287 Sum_probs=22.2
Q ss_pred HHHHHHHHhhhcCChHHHHHHHHHHHHHHHHhhhhhee
Q 035605 75 GLKQFLKNRELEMNLDNAGLAALFGVECFAWFCGGEII 112 (131)
Q Consensus 75 ~~k~~~k~~~~~lt~~ea~~~~l~~~Ev~~wF~vGEiI 112 (131)
.+++++++.. +-++.+ +.+.++-.++.-||||+|
T Consensus 21 ~vKrl~~~~~-~~~v~~---~v~i~v~glaKvfVgelV 54 (89)
T 1bh9_B 21 AIKRLIQSIT-GTSVSQ---NVVIAMSGISKVFVGEVV 54 (89)
T ss_dssp HHHHHHHHHH-SSCCCH---HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHc-CCCCCc---cHHHHHHHHHHHHHHHHH
Confidence 3455555543 445544 555667888999999987
No 2
>1ug0_A Splicing factor 4; SURP domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Mus musculus} SCOP: a.217.1.1
Probab=28.27 E-value=71 Score=21.36 Aligned_cols=28 Identities=18% Similarity=0.303 Sum_probs=24.2
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHhc
Q 035605 7 QLQSKASQASEFLIKNGSAYIKQLLEDN 34 (131)
Q Consensus 7 ql~sk~~~a~~~~~k~~~~~~~~l~~K~ 34 (131)
.+..-..+.+++|+++|..+-..++++.
T Consensus 26 ~~~~iIdktA~fVaknG~~FE~~l~~~e 53 (88)
T 1ug0_A 26 ETRRVIEKLARFVAEGGPELEKVAMEDY 53 (88)
T ss_dssp HHHHHHHHHHHHHHHHCHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHcCHHHHHHHHHhc
Confidence 4667778899999999999999999876
No 3
>2e5z_A SFRS8 protein, splicing factor, arginine/serine-rich 8; SURP domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=27.86 E-value=49 Score=22.63 Aligned_cols=30 Identities=20% Similarity=0.393 Sum_probs=24.8
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHhccc
Q 035605 7 QLQSKASQASEFLIKNGSAYIKQLLEDNKQ 36 (131)
Q Consensus 7 ql~sk~~~a~~~~~k~~~~~~~~l~~K~~~ 36 (131)
.++.-..+.+++|+|+|..+=..++++++.
T Consensus 23 dir~iIdktA~fVaknG~~FE~~i~~k~np 52 (90)
T 2e5z_A 23 DVQPVIDKLAEYVARNGLKFETSVRAKNDQ 52 (90)
T ss_dssp TTHHHHHHHHHHHHHSCHHHHHHHHHHCCG
T ss_pred HHHHHHHHHHHHHHHccHHHHHHHHHhCCC
Confidence 466778889999999999999999888543
No 4
>2dt6_A Splicing factor 3 subunit 1; structure genomics, SF3A120, SURP domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.217.1.1
Probab=27.20 E-value=57 Score=20.35 Aligned_cols=28 Identities=11% Similarity=0.456 Sum_probs=23.3
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHhc
Q 035605 7 QLQSKASQASEFLIKNGSAYIKQLLEDN 34 (131)
Q Consensus 7 ql~sk~~~a~~~~~k~~~~~~~~l~~K~ 34 (131)
.+..-....+++|+++|..+-..++++.
T Consensus 2 ~i~~iI~ktA~fVarnG~~fE~~l~~~e 29 (64)
T 2dt6_A 2 EVRNIVDKTASFVARNGPEFEARIRQNE 29 (64)
T ss_dssp HHHHHHHHHHHHHHHHCTHHHHHHHHHS
T ss_pred hHHHHHHHHHHHHHHcCHHHHHHHHHhc
Confidence 3556677889999999999999999875
No 5
>1l4a_A Synaptobrevin; snare, snare complex, membrane fusion, neurotransmission, endocytosis/exocytosis complex; 2.95A {Loligo pealei} SCOP: h.1.15.1
Probab=24.39 E-value=1.5e+02 Score=19.17 Aligned_cols=54 Identities=15% Similarity=0.223 Sum_probs=38.8
Q ss_pred cchhHHHHHHHHHHHHHHHhH------HHHHHHHHHhccccccCCchhhhH-HHHHHHHHH
Q 035605 3 SKLPQLQSKASQASEFLIKNG------SAYIKQLLEDNKQHIKDPPNIETC-QFLAKQLFH 56 (131)
Q Consensus 3 ~~~~ql~sk~~~a~~~~~k~~------~~~~~~l~~K~~~lv~~~v~~~K~-~eL~kq~~Y 56 (131)
.+|.+++..+.+......++. .+....|..|+..|...+-.+.|- .+|..+.++
T Consensus 15 d~l~~vq~el~ev~~iM~~NI~~vLeRGekLd~L~~kt~~L~~~s~~F~k~A~~l~rk~ww 75 (80)
T 1l4a_A 15 KRLQQTQAQVEEVVDIMRVNVDKVLERDSKISELDDRADALQAGASQFEASAGKLKRKFWW 75 (80)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTTSTTTTHHHHHHHHHCC-
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 478889999888877666543 356788888999999888887765 555554433
No 6
>1x4o_A Splicing factor 4; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: a.217.1.1
Probab=20.76 E-value=67 Score=20.93 Aligned_cols=28 Identities=18% Similarity=0.323 Sum_probs=23.6
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHhc
Q 035605 7 QLQSKASQASEFLIKNGSAYIKQLLEDN 34 (131)
Q Consensus 7 ql~sk~~~a~~~~~k~~~~~~~~l~~K~ 34 (131)
.+..-..+.+++|+++|.++=..++++.
T Consensus 16 ~~~~iIdktA~fVaknG~~fE~~l~~~~ 43 (78)
T 1x4o_A 16 EAKNLAEKLARFIADGGPEVETIALQNN 43 (78)
T ss_dssp HHHHHHHHHHHHHHHSCTTHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCHHHHHHHHHhc
Confidence 4667778899999999999999998874
No 7
>1vig_A Vigilin; RNA-binding protein, ribonucleoprotein; NMR {Homo sapiens} SCOP: d.51.1.1 PDB: 1vih_A
Probab=20.54 E-value=19 Score=22.61 Aligned_cols=11 Identities=18% Similarity=0.277 Sum_probs=8.7
Q ss_pred hhhheeccCcc
Q 035605 107 CGGEIIGRGFT 117 (131)
Q Consensus 107 ~vGEiIGRr~~ 117 (131)
++|.+||++++
T Consensus 15 ~ig~iIG~gG~ 25 (71)
T 1vig_A 15 FHRHLIGKSGA 25 (71)
T ss_dssp HHHHHTCSSCC
T ss_pred HhhhhcCCCCc
Confidence 47899999854
No 8
>3dfz_A SIRC, precorrin-2 dehydrogenase; NAD dehydrogenase, cobalamin biosynthesis, NAD, oxidoreducta porphyrin biosynthesis; 2.30A {Bacillus megaterium}
Probab=20.29 E-value=75 Score=24.41 Aligned_cols=40 Identities=8% Similarity=0.071 Sum_probs=31.4
Q ss_pred hhhhHHHHHHHHHHhhhhcCCCChHHHHHHHHHHHHHHHH
Q 035605 43 NIETCQFLAKQLFHTRLASIPNRVDAFWKELDGLKQFLKN 82 (131)
Q Consensus 43 ~~~K~~eL~kq~~Yak~el~PPt~~ef~~~~~~~k~~~k~ 82 (131)
|-++.|.|++.+.=.=++++||.++++-+....+.+.+++
T Consensus 146 T~G~sP~la~~iR~~ie~~lp~~~~~~~~~~~~~R~~vk~ 185 (223)
T 3dfz_A 146 TDGASPLLTKRIKEDLSSNYDESYTQYTQFLYECRVLIHR 185 (223)
T ss_dssp CTTSCHHHHHHHHHHHHHHSCTHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCcHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHH
Confidence 3466799999886555568999999998888887777776
No 9
>1g2y_A Hepatocyte nuclear factor 1-alpha; dimerization domain, four-helix bundle, transcription factor, selenomethionine; 1.00A {Synthetic} SCOP: a.34.2.1 PDB: 1g39_A 1f93_E 1g2z_A 1jb6_A 2gyp_A
Probab=19.60 E-value=66 Score=18.44 Aligned_cols=15 Identities=53% Similarity=0.505 Sum_probs=12.0
Q ss_pred CCcchhHHHHHHHHH
Q 035605 1 MDSKLPQLQSKASQA 15 (131)
Q Consensus 1 m~~~~~ql~sk~~~a 15 (131)
|.|||.+||...-.|
T Consensus 1 mvskLs~LQ~eLL~a 15 (32)
T 1g2y_A 1 MVSKLSQLQTEMLAA 15 (32)
T ss_dssp CCCHHHHHHHHHHHH
T ss_pred CcchHHHHHHHHHHH
Confidence 889999999876554
No 10
>2p2r_A Poly(RC)-binding protein 2; protein-DNA complex, RNA and DNA binding protein/DNA complex; 1.60A {Homo sapiens}
Probab=19.24 E-value=17 Score=22.87 Aligned_cols=11 Identities=45% Similarity=0.344 Sum_probs=8.6
Q ss_pred hhhheeccCcc
Q 035605 107 CGGEIIGRGFT 117 (131)
Q Consensus 107 ~vGEiIGRr~~ 117 (131)
.+|.+|||++.
T Consensus 15 ~vg~iIGkgG~ 25 (76)
T 2p2r_A 15 LIGCIIGRQGA 25 (76)
T ss_dssp HHHHHHCGGGH
T ss_pred HcceEECCCCh
Confidence 47899999854
Done!