Query 035605
Match_columns 131
No_of_seqs 130 out of 197
Neff 4.3
Searched_HMMs 13730
Date Mon Mar 25 06:58:30 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/035605.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/035605hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1v2aa1 a.45.1.1 (A:84-208) Cl 52.1 18 0.0013 22.6 5.7 48 22-72 47-94 (125)
2 d2dt6a1 a.217.1.1 (A:48-110) S 35.1 18 0.0013 21.3 3.3 27 8-34 2-28 (63)
3 d1ug0a_ a.217.1.1 (A:) Splicin 32.0 27 0.002 21.8 3.9 29 7-35 26-54 (88)
4 d1gria1 b.34.2.1 (A:1-56) Grow 24.8 4.8 0.00035 23.2 -0.9 21 104-129 34-54 (56)
5 d1x4oa1 a.217.1.1 (A:8-72) Spl 22.3 24 0.0017 20.8 2.1 29 7-35 9-37 (65)
6 d1bh9b_ a.22.1.3 (B:) TAF(II)2 21.1 48 0.0035 21.1 3.6 36 74-113 20-55 (89)
7 d1e3ha4 d.52.3.1 (A:579-632) P 21.0 9.6 0.0007 22.2 0.0 10 107-116 13-22 (54)
8 d1g2ya_ a.34.2.1 (A:) Hepatocy 20.6 29 0.0021 18.2 2.0 15 1-15 1-15 (31)
9 d2ezia_ a.4.1.2 (A:) Transposa 20.4 82 0.006 18.5 4.6 38 37-76 21-59 (75)
10 d2cpqa1 d.51.1.1 (A:212-289) F 18.1 9.8 0.00071 23.3 -0.5 11 107-117 18-28 (78)
No 1
>d1v2aa1 a.45.1.1 (A:84-208) Class delta GST {Mosquito (Anopheles dirus b), isozyme 1-6 [TaxId: 123217]}
Probab=52.10 E-value=18 Score=22.57 Aligned_cols=48 Identities=10% Similarity=0.098 Sum_probs=28.4
Q ss_pred hHHHHHHHHHHhccccccCCchhhhHHHHHHHHHHhhhhcCCCChHHHHHH
Q 035605 22 NGSAYIKQLLEDNKQHIKDPPNIETCQFLAKQLFHTRLASIPNRVDAFWKE 72 (131)
Q Consensus 22 ~~~~~~~~l~~K~~~lv~~~v~~~K~~eL~kq~~Yak~el~PPt~~ef~~~ 72 (131)
...+.+++.+++.+=++.+.++.+= +.-+......+..+...+++|.+
T Consensus 47 ~~l~~le~~L~~~~yl~Gd~~T~AD---i~l~~~~~~~~~~~~~~~~~P~l 94 (125)
T d1v2aa1 47 GALDLLEQFVTERAYAAADHLTVAD---ICLLGTVTALNWLKHDLEPFPHI 94 (125)
T ss_dssp HHHHHHHHHHHHSSSSSSSSCCHHH---HHHHHHHHGGGTTTCCCTTCHHH
T ss_pred HHHHHHHHHhCCCCccCCCCCcHHH---HHHHHHHHHHHHcCCCcccCHHH
Confidence 3566888999988888877787733 22222233444555445555543
No 2
>d2dt6a1 a.217.1.1 (A:48-110) Splicing factor 3 subunit 1, SF3A1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=35.11 E-value=18 Score=21.34 Aligned_cols=27 Identities=11% Similarity=0.452 Sum_probs=22.9
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHhc
Q 035605 8 LQSKASQASEFLIKNGSAYIKQLLEDN 34 (131)
Q Consensus 8 l~sk~~~a~~~~~k~~~~~~~~l~~K~ 34 (131)
++.-....+++|+++|.++-..++++.
T Consensus 2 i~~iI~~tA~fVak~G~~fE~~l~~~e 28 (63)
T d2dt6a1 2 VRNIVDKTASFVARNGPEFEARIRQNE 28 (63)
T ss_dssp HHHHHHHHHHHHHHHCTHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHhcHHHHHHHHHhc
Confidence 456677889999999999999999874
No 3
>d1ug0a_ a.217.1.1 (A:) Splicing factor 4 {Mouse (Mus musculus) [TaxId: 10090]}
Probab=31.96 E-value=27 Score=21.80 Aligned_cols=29 Identities=21% Similarity=0.329 Sum_probs=24.6
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHhcc
Q 035605 7 QLQSKASQASEFLIKNGSAYIKQLLEDNK 35 (131)
Q Consensus 7 ql~sk~~~a~~~~~k~~~~~~~~l~~K~~ 35 (131)
.+..-....+++|+++|..+-..++++..
T Consensus 26 ~~~~iI~~tA~~Vak~G~~fE~~l~~k~~ 54 (88)
T d1ug0a_ 26 ETRRVIEKLARFVAEGGPELEKVAMEDYK 54 (88)
T ss_dssp HHHHHHHHHHHHHHHHCHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHhCHHHHHHHHHhcc
Confidence 46677888999999999999999998854
No 4
>d1gria1 b.34.2.1 (A:1-56) Growth factor receptor-bound protein 2 (GRB2), N- and C-terminal domains {Human (Homo sapiens) [TaxId: 9606]}
Probab=24.84 E-value=4.8 Score=23.15 Aligned_cols=21 Identities=14% Similarity=0.412 Sum_probs=14.6
Q ss_pred HHhhhhheeccCcceeeeecccceee
Q 035605 104 AWFCGGEIIGRGFTITGYHVLLYFLY 129 (131)
Q Consensus 104 ~wF~vGEiIGRr~~lvGY~V~~~~~~ 129 (131)
.|.+.|++=||+ || +|+||+=
T Consensus 34 ~~W~~~~~~g~~----G~-vP~nyve 54 (56)
T d1gria1 34 QNWYKAELNGKD----GF-IPKNYIE 54 (56)
T ss_dssp CCEEEEESSSCE----EE-EEGGGEE
T ss_pred CCeEEEEECCcE----EE-EehhhEE
Confidence 355678876665 65 7888873
No 5
>d1x4oa1 a.217.1.1 (A:8-72) Splicing factor 4 {Mouse (Mus musculus) [TaxId: 10090]}
Probab=22.33 E-value=24 Score=20.78 Aligned_cols=29 Identities=17% Similarity=0.343 Sum_probs=23.0
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHhcc
Q 035605 7 QLQSKASQASEFLIKNGSAYIKQLLEDNK 35 (131)
Q Consensus 7 ql~sk~~~a~~~~~k~~~~~~~~l~~K~~ 35 (131)
.+..-....+++|+++|.++-..++++..
T Consensus 9 ~~~~iI~~tA~~Vak~G~~fE~~l~~k~~ 37 (65)
T d1x4oa1 9 EAKNLAEKLARFIADGGPEVETIALQNNR 37 (65)
T ss_dssp HHHHHHHHHHHHHHHSCTTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHccHHHHHHHHHhcc
Confidence 35566778889999999998888887654
No 6
>d1bh9b_ a.22.1.3 (B:) TAF(II)28 {Human (Homo sapiens) [TaxId: 9606]}
Probab=21.07 E-value=48 Score=21.07 Aligned_cols=36 Identities=8% Similarity=0.261 Sum_probs=23.2
Q ss_pred HHHHHHHHHhhhcCChHHHHHHHHHHHHHHHHhhhhheec
Q 035605 74 DGLKQFLKNRELEMNLDNAGLAALFGVECFAWFCGGEIIG 113 (131)
Q Consensus 74 ~~~k~~~k~~~~~lt~~ea~~~~l~~~Ev~~wF~vGEiIG 113 (131)
..+++++++-. +-++.+ +.++++--++=.||||||=
T Consensus 20 ~~vkrl~~~~~-g~sv~~---~v~i~v~giaKvFvGEiVE 55 (89)
T d1bh9b_ 20 AAIKRLIQSIT-GTSVSQ---NVVIAMSGISKVFVGEVVE 55 (89)
T ss_dssp HHHHHHHHHHH-SSCCCH---HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHc-CCCCCh---hHHHHHHHHHHHHHHHHHH
Confidence 34566666644 445554 5566666778889999873
No 7
>d1e3ha4 d.52.3.1 (A:579-632) Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 6 {Streptomyces antibioticus [TaxId: 1890]}
Probab=20.99 E-value=9.6 Score=22.25 Aligned_cols=10 Identities=40% Similarity=0.381 Sum_probs=0.0
Q ss_pred hhhheeccCc
Q 035605 107 CGGEIIGRGF 116 (131)
Q Consensus 107 ~vGEiIGRr~ 116 (131)
.+|++||+++
T Consensus 13 kig~vIG~GG 22 (54)
T d1e3ha4 13 KIGEVIGPKR 22 (54)
T ss_dssp ----------
T ss_pred HeeEEECCcc
Confidence 4799999993
No 8
>d1g2ya_ a.34.2.1 (A:) Hepatocyte nuclear factor 1 (HNF-1), N-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}
Probab=20.60 E-value=29 Score=18.19 Aligned_cols=15 Identities=53% Similarity=0.505 Sum_probs=11.3
Q ss_pred CCcchhHHHHHHHHH
Q 035605 1 MDSKLPQLQSKASQA 15 (131)
Q Consensus 1 m~~~~~ql~sk~~~a 15 (131)
|-|+|.|||...-.|
T Consensus 1 mvs~lsqlqte~laa 15 (31)
T d1g2ya_ 1 MVSKLSQLQTEMLAA 15 (31)
T ss_dssp CCCHHHHHHHHHHHH
T ss_pred CchHHHHHHHHHHHH
Confidence 789999999765443
No 9
>d2ezia_ a.4.1.2 (A:) Transposase {Bacteriophage mu [TaxId: 10677]}
Probab=20.42 E-value=82 Score=18.53 Aligned_cols=38 Identities=11% Similarity=0.141 Sum_probs=26.2
Q ss_pred cccCCchhhhH-HHHHHHHHHhhhhcCCCChHHHHHHHHHH
Q 035605 37 HIKDPPNIETC-QFLAKQLFHTRLASIPNRVDAFWKELDGL 76 (131)
Q Consensus 37 lv~~~v~~~K~-~eL~kq~~Yak~el~PPt~~ef~~~~~~~ 76 (131)
|...-++..+| .++...- .+.++.||++..|...++.+
T Consensus 21 L~~~~ps~~~~y~~i~~~c--~~~gl~~PS~~T~~rri~~l 59 (75)
T d2ezia_ 21 LRPEKPAFRKCYERLELAA--REHGWSIPSRATAFRRIQQL 59 (75)
T ss_dssp TSTTCCCHHHHHHHHHHHH--HHHTCCCCCHHHHHHHHHHH
T ss_pred hCccCCCHHHHHHHHHHHH--HHcCCCCCCHHHHHHHHHhC
Confidence 34455666777 6666533 47789999999997776543
No 10
>d2cpqa1 d.51.1.1 (A:212-289) Fragile X mental retardation syndrome related protein 1, FXR1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=18.11 E-value=9.8 Score=23.33 Aligned_cols=11 Identities=27% Similarity=0.102 Sum_probs=8.5
Q ss_pred hhhheeccCcc
Q 035605 107 CGGEIIGRGFT 117 (131)
Q Consensus 107 ~vGEiIGRr~~ 117 (131)
.+|.+|||++.
T Consensus 18 ~ig~vIG~gG~ 28 (78)
T d2cpqa1 18 LMGLAIGTHGS 28 (78)
T ss_dssp HHHHHHTTTTH
T ss_pred HHHHHcCCChH
Confidence 47899999843
Done!