Query 035606
Match_columns 232
No_of_seqs 133 out of 1271
Neff 8.0
Searched_HMMs 46136
Date Fri Mar 29 04:29:08 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/035606.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/035606hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF00954 S_locus_glycop: S-loc 100.0 8.7E-33 1.9E-37 207.4 11.9 109 9-118 1-110 (110)
2 PF08276 PAN_2: PAN-like domai 99.7 3.3E-18 7.1E-23 116.7 5.6 66 136-202 1-66 (66)
3 cd01098 PAN_AP_plant Plant PAN 99.6 1.1E-15 2.3E-20 108.4 8.2 80 133-217 2-84 (84)
4 cd00129 PAN_APPLE PAN/APPLE-li 99.5 1.2E-14 2.6E-19 102.5 6.3 70 138-216 7-80 (80)
5 smart00473 PAN_AP divergent su 98.8 4.7E-08 1E-12 67.5 7.6 72 140-215 4-77 (78)
6 cd01100 APPLE_Factor_XI_like S 97.7 4.8E-05 1E-09 52.4 4.2 48 146-198 10-58 (73)
7 PF00024 PAN_1: PAN domain Thi 94.8 0.043 9.4E-07 37.3 3.8 57 141-201 3-60 (79)
8 PF14295 PAN_4: PAN domain; PD 94.1 0.053 1.1E-06 33.8 2.8 35 161-195 15-51 (51)
9 smart00223 APPLE APPLE domain. 93.9 0.12 2.5E-06 36.2 4.3 51 146-197 7-57 (79)
10 PF08277 PAN_3: PAN-like domai 92.8 0.7 1.5E-05 31.0 6.8 51 160-215 18-70 (71)
11 smart00605 CW CW domain. 91.5 1.3 2.8E-05 31.7 7.2 55 160-218 20-76 (94)
12 PF00954 S_locus_glycop: S-loc 90.1 1.6 3.5E-05 32.1 6.9 65 28-98 32-96 (110)
13 PF07645 EGF_CA: Calcium-bindi 85.9 0.62 1.3E-05 28.2 1.9 32 86-117 3-36 (42)
14 cd00053 EGF Epidermal growth f 84.7 1 2.2E-05 25.0 2.4 29 88-116 2-31 (36)
15 cd01099 PAN_AP_HGF Subfamily o 79.4 5.7 0.00012 27.4 5.0 35 161-199 24-61 (80)
16 smart00179 EGF_CA Calcium-bind 78.0 2.5 5.4E-05 24.2 2.5 30 86-115 3-33 (39)
17 PF12661 hEGF: Human growth fa 77.2 0.97 2.1E-05 20.5 0.4 10 107-116 1-10 (13)
18 PF01683 EB: EB module; Inter 75.0 4 8.6E-05 25.6 3.0 33 83-118 17-49 (52)
19 cd00054 EGF_CA Calcium-binding 74.1 3.8 8.3E-05 23.0 2.5 30 86-115 3-33 (38)
20 PF07974 EGF_2: EGF-like domai 74.0 3 6.4E-05 23.8 1.9 24 92-116 6-29 (32)
21 PF09064 Tme5_EGF_like: Thromb 73.0 2.2 4.7E-05 24.7 1.2 19 99-117 11-29 (34)
22 PF12947 EGF_3: EGF domain; I 70.9 1.6 3.5E-05 25.6 0.3 26 91-116 5-31 (36)
23 PF00008 EGF: EGF-like domain 67.5 3.5 7.5E-05 23.3 1.2 25 92-116 4-30 (32)
24 PF12662 cEGF: Complement Clr- 66.9 2.9 6.3E-05 22.3 0.8 11 107-117 3-13 (24)
25 smart00181 EGF Epidermal growt 56.3 13 0.00028 20.7 2.4 24 92-116 6-30 (35)
26 PF12690 BsuPI: Intracellular 38.7 84 0.0018 21.8 4.7 37 35-73 8-44 (82)
27 PHA02887 EGF-like protein; Pro 38.5 38 0.00083 25.5 3.0 60 55-116 52-118 (126)
28 PF12946 EGF_MSP1_1: MSP1 EGF 36.8 19 0.00042 21.3 1.0 26 92-117 5-32 (37)
29 PF14670 FXa_inhibition: Coagu 34.6 24 0.00052 20.6 1.1 15 104-118 17-31 (36)
30 KOG4289 Cadherin EGF LAG seven 29.3 35 0.00076 36.4 2.0 42 91-132 1244-1286(2531)
31 PF06247 Plasmod_Pvs28: Plasmo 24.8 30 0.00065 28.3 0.5 35 84-118 38-82 (197)
32 PF14326 DUF4384: Domain of un 23.6 2.1E+02 0.0045 19.6 4.6 32 38-70 6-37 (83)
33 smart00765 MANEC The MANEC dom 21.9 1.4E+02 0.0031 21.4 3.5 34 162-195 38-72 (93)
No 1
>PF00954 S_locus_glycop: S-locus glycoprotein family; InterPro: IPR000858 In Brassicaceae, self-incompatible plants have a self/non-self recognition system, which involves the inability of flowering plants to achieve self-fertilisation. This is sporophytically controlled by multiple alleles at a single locus (S). There are a total of 50 different S alleles in Brassica oleracea. S-locus glycoproteins, as well as S-receptor kinases, are in linkage with the S-alleles []. Most of the proteins within this family contain apple-like domain (IPR003609 from INTERPRO), which is predicted to possess protein- and/or carbohydrate-binding functions.; GO: 0048544 recognition of pollen
Probab=100.00 E-value=8.7e-33 Score=207.45 Aligned_cols=109 Identities=46% Similarity=1.036 Sum_probs=104.2
Q ss_pred EeccccCCceeeecc-CCCCCceEEEEEEeCCeEEEEEEecCCCcEEEEEEeecCceeEEEEEecCCCCEEEEEeecCCC
Q 035606 9 QRSGPWNGLQFSASP-LRPNPIFNFSLVSNEDELCYTFDMRDKAAFSRIVMNQTLYLLQRFIWNKATQSWELYSYLPRDL 87 (232)
Q Consensus 9 w~sG~W~g~~f~~~p-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rl~ld~~G~l~~~~~w~~~~~~w~~~~~~p~~~ 87 (232)
||||+|||..|+|+| |.....+.+.|+.+++|+||+|.+.+.+.+.|++||++|++ +++.|.+..+.|...|++|.++
T Consensus 1 wrsG~WnG~~f~g~p~~~~~~~~~~~fv~~~~e~~~t~~~~~~s~~~r~~ld~~G~l-~~~~w~~~~~~W~~~~~~p~d~ 79 (110)
T PF00954_consen 1 WRSGPWNGQRFSGIPEMSSNSLYNYSFVSNNEEVYYTYSLSNSSVLSRLVLDSDGQL-QRYIWNESTQSWSVFWSAPKDQ 79 (110)
T ss_pred CCccccCCeEECCcccccccceeEEEEEECCCeEEEEEecCCCceEEEEEEeeeeEE-EEEEEecCCCcEEEEEEecccC
Confidence 899999999999999 88888999999999999999999988889999999999999 9999999999999999999999
Q ss_pred CCccCCCCCCcccccCCCceecCCCCceeCC
Q 035606 88 CDTYALCGACGVCIINDLPVCHCLNGFKPKS 118 (232)
Q Consensus 88 C~~~~~CG~~g~C~~~~~~~C~C~~Gf~~~~ 118 (232)
|++|+.||+||+|+.+..+.|+||+||+|++
T Consensus 80 Cd~y~~CG~~g~C~~~~~~~C~Cl~GF~P~n 110 (110)
T PF00954_consen 80 CDVYGFCGPNGICNSNNSPKCSCLPGFEPKN 110 (110)
T ss_pred CCCccccCCccEeCCCCCCceECCCCcCCCc
Confidence 9999999999999887788999999999863
No 2
>PF08276 PAN_2: PAN-like domain; InterPro: IPR013227 PAN domains have significant functional versatility fulfilling diverse biological functions by mediating protein-protein or protein-carbohydrate interactions []. These domains contain a hair-pin loop like structure, similar to knottins, but the pattern of disulphide bonds differs
Probab=99.74 E-value=3.3e-18 Score=116.66 Aligned_cols=66 Identities=45% Similarity=1.007 Sum_probs=55.5
Q ss_pred ccCCCceEEEcccCCCCCCCccccccCChHHHHHHHhcCCCeEEEEeccccCCCcceeeecccccee
Q 035606 136 YSRQDGFIKFTAMKLPDATPSRVSKSMNLNECREKCLENSSCMAYTNSDIRGGGSGCAMWFGELIDM 202 (232)
Q Consensus 136 C~~~~~f~~l~~~~~p~~~~~~~~~~~~~~~C~~~Cl~nCsC~a~~~~~~~~~~~gC~~w~~~l~~~ 202 (232)
|+.++.|++|++|++|++...+...++++++|+++||+||||+||+|.+++ ++++|++|+++|+|+
T Consensus 1 C~~~d~F~~l~~~~~p~~~~~~~~~~~s~~~C~~~Cl~nCsC~Ayay~~~~-~~~~C~lW~~~L~d~ 66 (66)
T PF08276_consen 1 CGSGDGFLKLPNMKLPDFDNAIVDSSVSLEECEKACLSNCSCTAYAYSNLS-GGGGCLLWYGDLVDL 66 (66)
T ss_pred CcCCCEEEEECCeeCCCCcceeeecCCCHHHHHhhcCCCCCEeeEEeeccC-CCCEEEEEcCEeecC
Confidence 434589999999999998666654568999999999999999999998544 566799999999874
No 3
>cd01098 PAN_AP_plant Plant PAN/APPLE-like domain; present in plant S-receptor protein kinases and secreted glycoproteins. PAN/APPLE domains fulfill diverse biological functions by mediating protein-protein or protein-carbohydrate interactions. S-receptor protein kinases and S-locus glycoproteins are involved in sporophytic self-incompatibility response in Brassica, one of probably many molecular mechanisms, by which hermaphrodite flowering plants avoid self-fertilization.
Probab=99.63 E-value=1.1e-15 Score=108.42 Aligned_cols=80 Identities=41% Similarity=0.907 Sum_probs=64.1
Q ss_pred cccccCC---CceEEEcccCCCCCCCccccccCChHHHHHHHhcCCCeEEEEeccccCCCcceeeeccccceeEEcCCCC
Q 035606 133 SLNYSRQ---DGFIKFTAMKLPDATPSRVSKSMNLNECREKCLENSSCMAYTNSDIRGGGSGCAMWFGELIDMRDFPDAG 209 (232)
Q Consensus 133 ~l~C~~~---~~f~~l~~~~~p~~~~~~~~~~~~~~~C~~~Cl~nCsC~a~~~~~~~~~~~gC~~w~~~l~~~~~~~~~~ 209 (232)
+++|.+. +.|+.++++++|+..... ..+++++|+++||+||+|+||+|.+ ++++|++|..++.+.+.....+
T Consensus 2 ~~~C~~~~~~~~f~~~~~~~~~~~~~~~--~~~s~~~C~~~Cl~nCsC~a~~~~~---~~~~C~~~~~~~~~~~~~~~~~ 76 (84)
T cd01098 2 PLNCGGDGSTDGFLKLPDVKLPDNASAI--TAISLEECREACLSNCSCTAYAYNN---GSGGCLLWNGLLNNLRSLSSGG 76 (84)
T ss_pred CcccCCCCCCCEEEEeCCeeCCCchhhh--ccCCHHHHHHHHhcCCCcceeeecC---CCCeEEEEeceecceEeecCCC
Confidence 3567543 589999999999765433 5678999999999999999999973 3456999999999887655556
Q ss_pred ceEEEEEe
Q 035606 210 QDLYIRMS 217 (232)
Q Consensus 210 ~~~~ikv~ 217 (232)
.++||||+
T Consensus 77 ~~~yiKv~ 84 (84)
T cd01098 77 GTLYLRLA 84 (84)
T ss_pred cEEEEEeC
Confidence 89999985
No 4
>cd00129 PAN_APPLE PAN/APPLE-like domain; present in N-terminal (N) domains of plasminogen/ hepatocyte growth factor proteins, plasma prekallikrein/coagulation factor XI and microneme antigen proteins, plant receptor-like protein kinases, and various nematode and leech anti-platelet proteins. Common structural features include two disulfide bonds that link the alpha-helix to the central region of the protein. PAN domains have significant functional versatility, fulfilling diverse biological functions by mediating protein-protein or protein-carbohydrate interactions.
Probab=99.54 E-value=1.2e-14 Score=102.50 Aligned_cols=70 Identities=20% Similarity=0.296 Sum_probs=58.9
Q ss_pred CCCceEEEcccCCCCCCCccccccCChHHHHHHHhc---CCCeEEEEeccccCCCcceeeecccc-ceeEEcCCCCceEE
Q 035606 138 RQDGFIKFTAMKLPDATPSRVSKSMNLNECREKCLE---NSSCMAYTNSDIRGGGSGCAMWFGEL-IDMRDFPDAGQDLY 213 (232)
Q Consensus 138 ~~~~f~~l~~~~~p~~~~~~~~~~~~~~~C~~~Cl~---nCsC~a~~~~~~~~~~~gC~~w~~~l-~~~~~~~~~~~~~~ 213 (232)
....|+.+.++++|++.. ++.++|+++|++ ||||+||+|.+ .+.||++|.++| .+++....+|.++|
T Consensus 7 ~~g~fl~~~~~klpd~~~------~s~~eC~~~Cl~~~~nCsC~Aya~~~---~~~gC~~W~~~l~~d~~~~~~~g~~Ly 77 (80)
T cd00129 7 SAGTTLIKIALKIKTTKA------NTADECANRCEKNGLPFSCKAFVFAK---ARKQCLWFPFNSMSGVRKEFSHGFDLY 77 (80)
T ss_pred cCCeEEEeecccCCcccc------cCHHHHHHHHhcCCCCCCceeeeccC---CCCCeEEecCcchhhHHhccCCCceeE
Confidence 346799999999997643 578999999999 99999999973 246899999999 89887766789999
Q ss_pred EEE
Q 035606 214 IRM 216 (232)
Q Consensus 214 ikv 216 (232)
||.
T Consensus 78 ~r~ 80 (80)
T cd00129 78 ENK 80 (80)
T ss_pred eEC
Confidence 983
No 5
>smart00473 PAN_AP divergent subfamily of APPLE domains. Apple-like domains present in Plasminogen, C. elegans hypothetical ORFs and the extracellular portion of plant receptor-like protein kinases. Predicted to possess protein- and/or carbohydrate-binding functions.
Probab=98.75 E-value=4.7e-08 Score=67.50 Aligned_cols=72 Identities=39% Similarity=0.777 Sum_probs=54.3
Q ss_pred CceEEEcccCCCCCCCccccccCChHHHHHHHhc-CCCeEEEEeccccCCCcceeeec-cccceeEEcCCCCceEEEE
Q 035606 140 DGFIKFTAMKLPDATPSRVSKSMNLNECREKCLE-NSSCMAYTNSDIRGGGSGCAMWF-GELIDMRDFPDAGQDLYIR 215 (232)
Q Consensus 140 ~~f~~l~~~~~p~~~~~~~~~~~~~~~C~~~Cl~-nCsC~a~~~~~~~~~~~gC~~w~-~~l~~~~~~~~~~~~~~ik 215 (232)
..|..++++.+++..... ....++++|++.|++ +|+|.||.|.. .+.+|.+|. +.+.+.......+.++|.|
T Consensus 4 ~~f~~~~~~~l~~~~~~~-~~~~s~~~C~~~C~~~~~~C~s~~y~~---~~~~C~l~~~~~~~~~~~~~~~~~~~y~~ 77 (78)
T smart00473 4 DCFVRLPNTKLPGFSRIV-ISVASLEECASKCLNSNCSCRSFTYNN---GTKGCLLWSESSLGDARLFPSGGVDLYEK 77 (78)
T ss_pred ceeEEecCccCCCCccee-EcCCCHHHHHHHhCCCCCceEEEEEcC---CCCEEEEeeCCccccceecccCCceeEEe
Confidence 468899999998554322 345689999999999 99999999972 344599999 7777776444555677766
No 6
>cd01100 APPLE_Factor_XI_like Subfamily of PAN/APPLE-like domains; present in plasma prekallikrein/coagulation factor XI, microneme antigen proteins, and a few prokaryotic proteins. PAN/APPLE domains fulfill diverse biological functions by mediating protein-protein or protein-carbohydrate interactions.
Probab=97.72 E-value=4.8e-05 Score=52.44 Aligned_cols=48 Identities=21% Similarity=0.460 Sum_probs=34.4
Q ss_pred cccCCCCCCCccccccCChHHHHHHHhcCCCeEEEEeccccCCCcc-eeeeccc
Q 035606 146 TAMKLPDATPSRVSKSMNLNECREKCLENSSCMAYTNSDIRGGGSG-CAMWFGE 198 (232)
Q Consensus 146 ~~~~~p~~~~~~~~~~~~~~~C~~~Cl~nCsC~a~~~~~~~~~~~g-C~~w~~~ 198 (232)
+++.++..+.... ...+.++|+.+|+.+++|.||.|.. +.+ |+++...
T Consensus 10 ~~~~~~g~d~~~~-~~~s~~~Cq~~C~~~~~C~afT~~~----~~~~C~lk~~~ 58 (73)
T cd01100 10 SNVDFRGGDLSTV-FASSAEQCQAACTADPGCLAFTYNT----KSKKCFLKSSE 58 (73)
T ss_pred CCCccccCCccee-ecCCHHHHHHHcCCCCCceEEEEEC----CCCeEEcccCC
Confidence 4666654433322 2457899999999999999999972 345 9997653
No 7
>PF00024 PAN_1: PAN domain This Prosite entry concerns apple domains, a subset of PAN domains; InterPro: IPR003014 PAN domains have significant functional versatility fulfilling diverse biological functions by mediating protein-protein or protein-carbohydrate interactions []. These domains contain a hair-pin loop like structure, similar to knottins, but the pattern of disulphide bonds differs It has been shown that, the N-terminal N domains of members of the plasminogen/hepatocyte growth factor family, the apple domains of the plasma prekallikrein/coagulation factor XI family, and domains of various nematode proteins belong to the same module superfamily, the PAN module []. PAN contains a conserved core of three disulphide bridges. In some members of the family there is an additional fourth disulphide bridge that links the N and C termini of the domain.; PDB: 1GP9_C 2QJ2_B 1GMO_H 1NK1_B 3MKP_B 1BHT_B 3HN4_A 1GMN_A 3HMS_A 3HMT_B ....
Probab=94.80 E-value=0.043 Score=37.33 Aligned_cols=57 Identities=16% Similarity=0.429 Sum_probs=39.2
Q ss_pred ceEEEcccCCCCCCCccccccCChHHHHHHHhcCCC-eEEEEeccccCCCcceeeeccccce
Q 035606 141 GFIKFTAMKLPDATPSRVSKSMNLNECREKCLENSS-CMAYTNSDIRGGGSGCAMWFGELID 201 (232)
Q Consensus 141 ~f~~l~~~~~p~~~~~~~~~~~~~~~C~~~Cl~nCs-C~a~~~~~~~~~~~gC~~w~~~l~~ 201 (232)
.|..+++..+........ ...++++|...|+.+=. |.+|.|.. ....|+|...+...
T Consensus 3 ~f~~~~~~~l~~~~~~~~-~v~s~~~C~~~C~~~~~~C~s~~y~~---~~~~C~L~~~~~~~ 60 (79)
T PF00024_consen 3 AFERIPGYRLSGHSIKEI-NVPSLEECAQLCLNEPRRCKSFNYDP---SSKTCYLSSSDRSS 60 (79)
T ss_dssp TEEEEEEEEEESCEEEEE-EESSHHHHHHHHHHSTT-ESEEEEET---TTTEEEEECSSSSS
T ss_pred CeEEECCEEEeCCcceEE-cCCCHHHHHhhcCcCcccCCeEEEEC---CCCEEEEcCCCCCc
Confidence 466777777655322222 33489999999999999 99999973 23349997654433
No 8
>PF14295 PAN_4: PAN domain; PDB: 2YIL_E 2YIP_C 2YIO_A.
Probab=94.15 E-value=0.053 Score=33.84 Aligned_cols=35 Identities=26% Similarity=0.565 Sum_probs=17.7
Q ss_pred cCChHHHHHHHhcCCCeEEEEecccc-CCCcc-eeee
Q 035606 161 SMNLNECREKCLENSSCMAYTNSDIR-GGGSG-CAMW 195 (232)
Q Consensus 161 ~~~~~~C~~~Cl~nCsC~a~~~~~~~-~~~~g-C~~w 195 (232)
..+.++|.+.|.++=.|.++.|.... .++.+ |+|+
T Consensus 15 ~~s~~~C~~~C~~~~~C~~~~~~~~~~~~~~~~C~LK 51 (51)
T PF14295_consen 15 ASSPEECQAACAADPGCQAFTFNPPGCPSSSGRCYLK 51 (51)
T ss_dssp ---HHHHHHHHHTSTT--EEEEETTEE----------
T ss_pred CCCHHHHHHHccCCCCCCEEEEECCCcccccccccCC
Confidence 45789999999999999999987310 11234 8763
No 9
>smart00223 APPLE APPLE domain. Four-fold repeat in plasma kallikrein and coagulation factor XI. Factor XI apple 3 mediates binding to platelets. Factor XI apple 1 binds high-molecular-mass kininogen. Apple 4 in factor XI mediates dimer formation and binds to factor XIIa. Mutations in apple 4 cause factor XI deficiency, an inherited bleeding disorder.
Probab=93.88 E-value=0.12 Score=36.22 Aligned_cols=51 Identities=14% Similarity=0.291 Sum_probs=35.1
Q ss_pred cccCCCCCCCccccccCChHHHHHHHhcCCCeEEEEeccccCCCcceeeecc
Q 035606 146 TAMKLPDATPSRVSKSMNLNECREKCLENSSCMAYTNSDIRGGGSGCAMWFG 197 (232)
Q Consensus 146 ~~~~~p~~~~~~~~~~~~~~~C~~~Cl~nCsC~a~~~~~~~~~~~gC~~w~~ 197 (232)
.++++...+...+ ...+.++|+.+|..+=.|.+|.|...+.....|+++..
T Consensus 7 ~~~df~G~Dl~~~-~~~~~~~Cq~~Ct~~~~C~~FTf~~~~~~~~~C~LK~s 57 (79)
T smart00223 7 KNVDFRGSDINTV-YVPSAQVCQKRCTSHPRCLFFTFSTNEPPEEKCLLKDS 57 (79)
T ss_pred cCccccCceeeee-ecCCHHHHHHhhcCCCCccEEEeeCCCCCCCEeEeCcC
Confidence 4556655444333 24578999999999999999999742222226999754
No 10
>PF08277 PAN_3: PAN-like domain; InterPro: IPR006583 PAN domains have significant functional versatility fulfilling diverse biological functions by mediating protein-protein or protein-carbohydrate interactions []. These domains contain a hair-pin loop like structure, similar to knottins, but the pattern of disulphide bonds differs The PAN-3 or CW is a domain associated with a number of Caenorhabditis elegans hypothetical proteins.
Probab=92.76 E-value=0.7 Score=30.98 Aligned_cols=51 Identities=14% Similarity=0.490 Sum_probs=35.1
Q ss_pred ccCChHHHHHHHhcCCCeEEEEeccccCCCcceeeec-cccceeEEcC-CCCceEEEE
Q 035606 160 KSMNLNECREKCLENSSCMAYTNSDIRGGGSGCAMWF-GELIDMRDFP-DAGQDLYIR 215 (232)
Q Consensus 160 ~~~~~~~C~~~Cl~nCsC~a~~~~~~~~~~~gC~~w~-~~l~~~~~~~-~~~~~~~ik 215 (232)
...+.++|-..|..+=.|.++.+. ...|.++. +++..+++.. ..+..+-||
T Consensus 18 ~~~sw~~Cv~~C~~~~~C~la~~~-----~~~C~~y~~~~i~~v~~~~~~~~~~VA~K 70 (71)
T PF08277_consen 18 TNTSWDDCVQKCYNDENCVLAYFD-----SGKCYLYNYGSISTVQKTDSSSGNKVAFK 70 (71)
T ss_pred cCCCHHHHhHHhCCCCEEEEEEeC-----CCCEEEEEcCCEEEEEEeecCCCeEEEEE
Confidence 456789999999999999998875 35699875 4554555543 333334444
No 11
>smart00605 CW CW domain.
Probab=91.47 E-value=1.3 Score=31.66 Aligned_cols=55 Identities=20% Similarity=0.621 Sum_probs=39.6
Q ss_pred ccCChHHHHHHHhcCCCeEEEEeccccCCCcceeeec-cccceeEEcCC-CCceEEEEEec
Q 035606 160 KSMNLNECREKCLENSSCMAYTNSDIRGGGSGCAMWF-GELIDMRDFPD-AGQDLYIRMSA 218 (232)
Q Consensus 160 ~~~~~~~C~~~Cl~nCsC~a~~~~~~~~~~~gC~~w~-~~l~~~~~~~~-~~~~~~ikv~~ 218 (232)
...+.++|...|..+..|+.+... ....|.+.. +++..+++... .+..+=||+..
T Consensus 20 ~~~sw~~Ci~~C~~~~~Cvlay~~----~~~~C~~f~~~~~~~v~~~~~~~~~~VAfK~~~ 76 (94)
T smart00605 20 ATLSWDECIQKCYEDSNCVLAYGN----SSETCYLFSYGTVLTVKKLSSSSGKKVAFKVST 76 (94)
T ss_pred cCCCHHHHHHHHhCCCceEEEecC----CCCceEEEEcCCeEEEEEccCCCCcEEEEEEeC
Confidence 356789999999999999987654 235698865 45666766643 45667788754
No 12
>PF00954 S_locus_glycop: S-locus glycoprotein family; InterPro: IPR000858 In Brassicaceae, self-incompatible plants have a self/non-self recognition system, which involves the inability of flowering plants to achieve self-fertilisation. This is sporophytically controlled by multiple alleles at a single locus (S). There are a total of 50 different S alleles in Brassica oleracea. S-locus glycoproteins, as well as S-receptor kinases, are in linkage with the S-alleles []. Most of the proteins within this family contain apple-like domain (IPR003609 from INTERPRO), which is predicted to possess protein- and/or carbohydrate-binding functions.; GO: 0048544 recognition of pollen
Probab=90.14 E-value=1.6 Score=32.06 Aligned_cols=65 Identities=8% Similarity=0.271 Sum_probs=48.4
Q ss_pred CceEEEEEEeCCeEEEEEEecCCCcEEEEEEeecCceeEEEEEecCCCCEEEEEeecCCCCCccCCCCCCc
Q 035606 28 PIFNFSLVSNEDELCYTFDMRDKAAFSRIVMNQTLYLLQRFIWNKATQSWELYSYLPRDLCDTYALCGACG 98 (232)
Q Consensus 28 ~~~~~~~~~~~~~~~~~~~~~~~~~~~rl~ld~~G~l~~~~~w~~~~~~w~~~~~~p~~~C~~~~~CG~~g 98 (232)
....++|...+..++.++.+.....+++++++.+.+- +...|......+. ....|+.+++|-.+.
T Consensus 32 ~e~~~t~~~~~~s~~~r~~ld~~G~l~~~~w~~~~~~-W~~~~~~p~d~Cd-----~y~~CG~~g~C~~~~ 96 (110)
T PF00954_consen 32 EEVYYTYSLSNSSVLSRLVLDSDGQLQRYIWNESTQS-WSVFWSAPKDQCD-----VYGFCGPNGICNSNN 96 (110)
T ss_pred CeEEEEEecCCCceEEEEEEeeeeEEEEEEEecCCCc-EEEEEEecccCCC-----CccccCCccEeCCCC
Confidence 3455666666667777777776667889998888888 8888877666666 457899999997654
No 13
>PF07645 EGF_CA: Calcium-binding EGF domain; InterPro: IPR001881 A sequence of about forty amino-acid residues found in epidermal growth factor (EGF) has been shown [, , , , , ] to be present in a large number of membrane-bound and extracellular, mostly animal, proteins. Many of these proteins require calcium for their biological function and a calcium-binding site has been found at the N terminus of some EGF-like domains []. Calcium-binding may be crucial for numerous protein-protein interactions. For human coagulation factor IX it has been shown [] that the calcium-ligands form a pentagonal bipyramid. The first, third and fourth conserved negatively charged or polar residues are side chain ligands. The latter is possibly hydroxylated (see aspartic acid and asparagine hydroxylation site) []. A conserved aromatic residue, as well as the second conserved negative residue, are thought to be involved in stabilising the calcium-binding site. As in non-calcium binding EGF-like domains, there are six conserved cysteines and the structure of both types is very similar as calcium-binding induces only strictly local structural changes []. +------------------+ +---------+ | | | | nxnnC-x(3,14)-C-x(3,7)-CxxbxxxxaxC-x(1,6)-C-x(8,13)-Cx | | +------------------+ 'n': negatively charged or polar residue [DEQN] 'b': possibly beta-hydroxylated residue [DN] 'a': aromatic amino acid 'C': cysteine, involved in disulphide bond 'x': any amino acid. ; GO: 0005509 calcium ion binding; PDB: 2VJ3_A 1TOZ_A 1LMJ_A 1UZQ_A 1UZK_A 1UZJ_B 1UZP_A 1EMO_A 1EMN_A 2RR0_A ....
Probab=85.92 E-value=0.62 Score=28.16 Aligned_cols=32 Identities=25% Similarity=0.605 Sum_probs=24.2
Q ss_pred CCCCc-cCCCCCCcccccC-CCceecCCCCceeC
Q 035606 86 DLCDT-YALCGACGVCIIN-DLPVCHCLNGFKPK 117 (232)
Q Consensus 86 ~~C~~-~~~CG~~g~C~~~-~~~~C~C~~Gf~~~ 117 (232)
|.|.. ...|..++.|... ..-.|.|++||...
T Consensus 3 dEC~~~~~~C~~~~~C~N~~Gsy~C~C~~Gy~~~ 36 (42)
T PF07645_consen 3 DECAEGPHNCPENGTCVNTEGSYSCSCPPGYELN 36 (42)
T ss_dssp STTTTTSSSSSTTSEEEEETTEEEEEESTTEEEC
T ss_pred cccCCCCCcCCCCCEEEcCCCCEEeeCCCCcEEC
Confidence 56766 4589999999654 45679999999843
No 14
>cd00053 EGF Epidermal growth factor domain, found in epidermal growth factor (EGF) presents in a large number of proteins, mostly animal; the list of proteins currently known to contain one or more copies of an EGF-like pattern is large and varied; the functional significance of EGF-like domains in what appear to be unrelated proteins is not yet clear; a common feature is that these repeats are found in the extracellular domain of membrane-bound proteins or in proteins known to be secreted (exception: prostaglandin G/H synthase); the domain includes six cysteine residues which have been shown to be involved in disulfide bonds; the main structure is a two-stranded beta-sheet followed by a loop to a C-terminal short two-stranded sheet; Subdomains between the conserved cysteines vary in length; the region between the 5th and 6th cysteine contains two conserved glycines of which at least one is present in most EGF-like domains; a subset of these bind calcium.
Probab=84.72 E-value=1 Score=25.04 Aligned_cols=29 Identities=24% Similarity=0.652 Sum_probs=20.9
Q ss_pred CCccCCCCCCcccccC-CCceecCCCCcee
Q 035606 88 CDTYALCGACGVCIIN-DLPVCHCLNGFKP 116 (232)
Q Consensus 88 C~~~~~CG~~g~C~~~-~~~~C~C~~Gf~~ 116 (232)
|.....|..++.|... ....|.|++||..
T Consensus 2 C~~~~~C~~~~~C~~~~~~~~C~C~~g~~g 31 (36)
T cd00053 2 CAASNPCSNGGTCVNTPGSYRCVCPPGYTG 31 (36)
T ss_pred CCCCCCCCCCCEEecCCCCeEeECCCCCcc
Confidence 3334678888899654 3578999999854
No 15
>cd01099 PAN_AP_HGF Subfamily of PAN/APPLE-like domains; present in N-terminal (N) domains of plasminogen/hepatocyte growth factor proteins, and various proteins found in Bilateria, such as leech anti-platelet proteins. PAN/APPLE domains fulfill diverse biological functions by mediating protein-protein or protein-carbohydrate interactions.
Probab=79.40 E-value=5.7 Score=27.44 Aligned_cols=35 Identities=29% Similarity=0.552 Sum_probs=27.3
Q ss_pred cCChHHHHHHHhc--CCCeEEEEeccccCCCcc-eeeecccc
Q 035606 161 SMNLNECREKCLE--NSSCMAYTNSDIRGGGSG-CAMWFGEL 199 (232)
Q Consensus 161 ~~~~~~C~~~Cl~--nCsC~a~~~~~~~~~~~g-C~~w~~~l 199 (232)
..+.++|..+|++ +=.|.++.|.. .++ |.|-..+.
T Consensus 24 ~~s~~~C~~~C~~~~~f~CrSf~y~~----~~~~C~L~~~~~ 61 (80)
T cd01099 24 VASLEECLRKCLEETEFTCRSFNYNY----KSKECILSDEDR 61 (80)
T ss_pred cCCHHHHHHHhCCCCCceEeEEEEEc----CCCEEEEeCCCc
Confidence 4689999999999 88899999863 344 99855444
No 16
>smart00179 EGF_CA Calcium-binding EGF-like domain.
Probab=78.00 E-value=2.5 Score=24.21 Aligned_cols=30 Identities=27% Similarity=0.634 Sum_probs=21.3
Q ss_pred CCCCccCCCCCCcccccCC-CceecCCCCce
Q 035606 86 DLCDTYALCGACGVCIIND-LPVCHCLNGFK 115 (232)
Q Consensus 86 ~~C~~~~~CG~~g~C~~~~-~~~C~C~~Gf~ 115 (232)
+.|.....|...+.|.... ...|.|++||.
T Consensus 3 ~~C~~~~~C~~~~~C~~~~g~~~C~C~~g~~ 33 (39)
T smart00179 3 DECASGNPCQNGGTCVNTVGSYRCECPPGYT 33 (39)
T ss_pred ccCcCCCCcCCCCEeECCCCCeEeECCCCCc
Confidence 4565445688888896543 45799999986
No 17
>PF12661 hEGF: Human growth factor-like EGF; PDB: 2YGQ_A 2E26_A 3A7Q_A 2YGP_A 2YGO_A 1HRE_A 1HAE_A 1HAF_A 1HRF_A.
Probab=77.16 E-value=0.97 Score=20.45 Aligned_cols=10 Identities=30% Similarity=0.989 Sum_probs=7.0
Q ss_pred eecCCCCcee
Q 035606 107 VCHCLNGFKP 116 (232)
Q Consensus 107 ~C~C~~Gf~~ 116 (232)
.|.|++||.-
T Consensus 1 ~C~C~~G~~G 10 (13)
T PF12661_consen 1 TCQCPPGWTG 10 (13)
T ss_dssp EEEE-TTEET
T ss_pred CccCcCCCcC
Confidence 4899999853
No 18
>PF01683 EB: EB module; InterPro: IPR006149 The EB domain has no known function. It is found in several Caenorhabditis sp. and Drosophila sp. proteins. The domain contains 8 conserved cysteines that probably form four disulphide bridges and is found associated with kunitz domains IPR002223 from INTERPRO
Probab=75.04 E-value=4 Score=25.63 Aligned_cols=33 Identities=24% Similarity=0.641 Sum_probs=26.5
Q ss_pred ecCCCCCccCCCCCCcccccCCCceecCCCCceeCC
Q 035606 83 LPRDLCDTYALCGACGVCIINDLPVCHCLNGFKPKS 118 (232)
Q Consensus 83 ~p~~~C~~~~~CG~~g~C~~~~~~~C~C~~Gf~~~~ 118 (232)
.|-+.|....-|-.++.|. ...|.|++||.+..
T Consensus 17 ~~g~~C~~~~qC~~~s~C~---~g~C~C~~g~~~~~ 49 (52)
T PF01683_consen 17 QPGESCESDEQCIGGSVCV---NGRCQCPPGYVEVG 49 (52)
T ss_pred CCCCCCCCcCCCCCcCEEc---CCEeECCCCCEecC
Confidence 3556799999999999995 46899999997753
No 19
>cd00054 EGF_CA Calcium-binding EGF-like domain, present in a large number of membrane-bound and extracellular (mostly animal) proteins. Many of these proteins require calcium for their biological function and calcium-binding sites have been found to be located at the N-terminus of particular EGF-like domains; calcium-binding may be crucial for numerous protein-protein interactions. Six conserved core cysteines form three disulfide bridges as in non calcium-binding EGF domains, whose structures are very similar. EGF_CA can be found in tandem repeat arrangements.
Probab=74.14 E-value=3.8 Score=22.98 Aligned_cols=30 Identities=27% Similarity=0.627 Sum_probs=20.6
Q ss_pred CCCCccCCCCCCcccccCC-CceecCCCCce
Q 035606 86 DLCDTYALCGACGVCIIND-LPVCHCLNGFK 115 (232)
Q Consensus 86 ~~C~~~~~CG~~g~C~~~~-~~~C~C~~Gf~ 115 (232)
+.|.....|...+.|.... ...|.|++||.
T Consensus 3 ~~C~~~~~C~~~~~C~~~~~~~~C~C~~g~~ 33 (38)
T cd00054 3 DECASGNPCQNGGTCVNTVGSYRCSCPPGYT 33 (38)
T ss_pred ccCCCCCCcCCCCEeECCCCCeEeECCCCCc
Confidence 4465435687778896543 45799999985
No 20
>PF07974 EGF_2: EGF-like domain; InterPro: IPR013111 A sequence of about thirty to forty amino-acid residues long found in the sequence of epidermal growth factor (EGF) has been shown [, , , , ] to be present, in a more or less conserved form, in a large number of other, mostly animal proteins. The list of proteins currently known to contain one or more copies of an EGF-like pattern is large and varied. The functional significance of EGF domains in what appear to be unrelated proteins is not yet clear. However, a common feature is that these repeats are found in the extracellular domain of membrane-bound proteins or in proteins known to be secreted (exception: prostaglandin G/H synthase). The EGF domain includes six cysteine residues which have been shown (in EGF) to be involved in disulphide bonds. The main structure is a two-stranded beta-sheet followed by a loop to a C-terminal short two-stranded sheet. Subdomains between the conserved cysteines vary in length. This entry contains EGF domains found in a variety of extracellular and membrane proteins
Probab=74.04 E-value=3 Score=23.81 Aligned_cols=24 Identities=25% Similarity=0.765 Sum_probs=18.6
Q ss_pred CCCCCCcccccCCCceecCCCCcee
Q 035606 92 ALCGACGVCIINDLPVCHCLNGFKP 116 (232)
Q Consensus 92 ~~CG~~g~C~~~~~~~C~C~~Gf~~ 116 (232)
..|...|.|... ...|.|.+||.-
T Consensus 6 ~~C~~~G~C~~~-~g~C~C~~g~~G 29 (32)
T PF07974_consen 6 NICSGHGTCVSP-CGRCVCDSGYTG 29 (32)
T ss_pred CccCCCCEEeCC-CCEEECCCCCcC
Confidence 468889999643 568999999853
No 21
>PF09064 Tme5_EGF_like: Thrombomodulin like fifth domain, EGF-like; InterPro: IPR015149 This domain adopts a fold similar to other EGF domains, with a flat major and a twisted minor beta sheet. Disulphide pairing, however, is not of the usual 1-3, 2-4, 5-6 type; rather 1-2, 3-4, 5-6 pairing is found. Its extended major sheet (strands beta-2 and beta-3 and the connecting loop) projects into thrombin's active site groove. This domain is required for interaction of thrombomodulin with thrombin, and subsequent activation of protein-C []. ; GO: 0004888 transmembrane signaling receptor activity, 0016021 integral to membrane
Probab=72.99 E-value=2.2 Score=24.75 Aligned_cols=19 Identities=26% Similarity=0.534 Sum_probs=13.7
Q ss_pred ccccCCCceecCCCCceeC
Q 035606 99 VCIINDLPVCHCLNGFKPK 117 (232)
Q Consensus 99 ~C~~~~~~~C~C~~Gf~~~ 117 (232)
.|+.+....|.||.||-..
T Consensus 11 ~CDpn~~~~C~CPeGyIld 29 (34)
T PF09064_consen 11 DCDPNSPGQCFCPEGYILD 29 (34)
T ss_pred ccCCCCCCceeCCCceEec
Confidence 4554556789999999653
No 22
>PF12947 EGF_3: EGF domain; InterPro: IPR024731 This entry represents an EGF domain found in the the C terminus of malarial parasite merozoite surface protein 1 [], as well as other proteins.; PDB: 2NPR_A 1N1I_C 1B9W_A 1YO8_A 2RHP_A.
Probab=70.87 E-value=1.6 Score=25.64 Aligned_cols=26 Identities=19% Similarity=0.492 Sum_probs=17.8
Q ss_pred cCCCCCCcccccC-CCceecCCCCcee
Q 035606 91 YALCGACGVCIIN-DLPVCHCLNGFKP 116 (232)
Q Consensus 91 ~~~CG~~g~C~~~-~~~~C~C~~Gf~~ 116 (232)
.+-|.++..|... ....|.|.+||.-
T Consensus 5 ~~~C~~nA~C~~~~~~~~C~C~~Gy~G 31 (36)
T PF12947_consen 5 NGGCHPNATCTNTGGSYTCTCKPGYEG 31 (36)
T ss_dssp GGGS-TTCEEEE-TTSEEEEE-CEEEC
T ss_pred CCCCCCCcEeecCCCCEEeECCCCCcc
Confidence 4578899999764 3678999999953
No 23
>PF00008 EGF: EGF-like domain This is a sub-family of the Pfam entry This is a sub-family of the Pfam entry; InterPro: IPR006209 A sequence of about thirty to forty amino-acid residues long found in the sequence of epidermal growth factor (EGF) has been shown [, , , , ] to be present, in a more or less conserved form, in a large number of other, mostly animal proteins. The list of proteins currently known to contain one or more copies of an EGF-like pattern is large and varied. The functional significance of EGF domains in what appear to be unrelated proteins is not yet clear. However, a common feature is that these repeats are found in the extracellular domain of membrane-bound proteins or in proteins known to be secreted (exception: prostaglandin G/H synthase). The EGF domain includes six cysteine residues which have been shown (in EGF) to be involved in disulphide bonds. The main structure is a two-stranded beta-sheet followed by a loop to a C-terminal short two-stranded sheet. Subdomains between the conserved cysteines vary in length.; GO: 0005515 protein binding; PDB: 1WHE_A 1CCF_A 1APO_A 1WHF_A 2VJ3_A 1TOZ_A 4D90_B 3CFW_A 1EDM_B 1IXA_A ....
Probab=67.48 E-value=3.5 Score=23.33 Aligned_cols=25 Identities=28% Similarity=0.586 Sum_probs=18.6
Q ss_pred CCCCCCcccccC--CCceecCCCCcee
Q 035606 92 ALCGACGVCIIN--DLPVCHCLNGFKP 116 (232)
Q Consensus 92 ~~CG~~g~C~~~--~~~~C~C~~Gf~~ 116 (232)
..|...|.|... ....|.|++||.-
T Consensus 4 ~~C~n~g~C~~~~~~~y~C~C~~G~~G 30 (32)
T PF00008_consen 4 NPCQNGGTCIDLPGGGYTCECPPGYTG 30 (32)
T ss_dssp TSSTTTEEEEEESTSEEEEEEBTTEES
T ss_pred CcCCCCeEEEeCCCCCEEeECCCCCcc
Confidence 367888888543 3568999999863
No 24
>PF12662 cEGF: Complement Clr-like EGF-like
Probab=66.90 E-value=2.9 Score=22.30 Aligned_cols=11 Identities=27% Similarity=0.927 Sum_probs=9.4
Q ss_pred eecCCCCceeC
Q 035606 107 VCHCLNGFKPK 117 (232)
Q Consensus 107 ~C~C~~Gf~~~ 117 (232)
.|.|++||...
T Consensus 3 ~C~C~~Gy~l~ 13 (24)
T PF12662_consen 3 TCSCPPGYQLS 13 (24)
T ss_pred EeeCCCCCcCC
Confidence 69999999864
No 25
>smart00181 EGF Epidermal growth factor-like domain.
Probab=56.30 E-value=13 Score=20.69 Aligned_cols=24 Identities=25% Similarity=0.635 Sum_probs=17.0
Q ss_pred CCCCCCcccccC-CCceecCCCCcee
Q 035606 92 ALCGACGVCIIN-DLPVCHCLNGFKP 116 (232)
Q Consensus 92 ~~CG~~g~C~~~-~~~~C~C~~Gf~~ 116 (232)
..|... .|... ....|.|++||..
T Consensus 6 ~~C~~~-~C~~~~~~~~C~C~~g~~g 30 (35)
T smart00181 6 GPCSNG-TCINTPGSYTCSCPPGYTG 30 (35)
T ss_pred CCCCCC-EEECCCCCeEeECCCCCcc
Confidence 456666 78644 4678999999964
No 26
>PF12690 BsuPI: Intracellular proteinase inhibitor; InterPro: IPR020481 BsuPI is a intracellular proteinase inhibitor that directly regulates the major intracellular proteinase (ISP-1) activity in vivo. It inhibits ISP-1 in the early stages of sporulation and then may be inactivated by a membrane-bound proteinase [].; PDB: 3ISY_A.
Probab=38.68 E-value=84 Score=21.83 Aligned_cols=37 Identities=14% Similarity=0.291 Sum_probs=19.0
Q ss_pred EEeCCeEEEEEEecCCCcEEEEEEeecCceeEEEEEecC
Q 035606 35 VSNEDELCYTFDMRDKAAFSRIVMNQTLYLLQRFIWNKA 73 (232)
Q Consensus 35 ~~~~~~~~~~~~~~~~~~~~rl~ld~~G~l~~~~~w~~~ 73 (232)
+.|..+.-.++..+.+..+-..++|.+|. .+|.|+++
T Consensus 8 v~N~s~~~v~l~f~sgq~~D~~v~d~~g~--~vwrwS~~ 44 (82)
T PF12690_consen 8 VTNNSDEPVTLQFPSGQRYDFVVKDKEGK--EVWRWSDG 44 (82)
T ss_dssp EEE-SSS-EEEEESSS--EEEEEE-TT----EEEETTTT
T ss_pred EEeCCCCeEEEEeCCCCEEEEEEECCCCC--EEEEecCC
Confidence 34444444445555566677888888888 56778765
No 27
>PHA02887 EGF-like protein; Provisional
Probab=38.46 E-value=38 Score=25.48 Aligned_cols=60 Identities=20% Similarity=0.402 Sum_probs=34.3
Q ss_pred EEEEeecCceeEEEEEecCC--CCEEEEEeecCCCCCc--cCCCCCCcccccC---CCceecCCCCcee
Q 035606 55 RIVMNQTLYLLQRFIWNKAT--QSWELYSYLPRDLCDT--YALCGACGVCIIN---DLPVCHCLNGFKP 116 (232)
Q Consensus 55 rl~ld~~G~l~~~~~w~~~~--~~w~~~~~~p~~~C~~--~~~CG~~g~C~~~---~~~~C~C~~Gf~~ 116 (232)
.++-+..|.. ....+.+.. ..-...++..-..|.- -++|= +|.|.+- +.+.|.|.+||.-
T Consensus 52 ~i~rn~e~h~-s~~~y~en~~~~~~~rk~~~hf~pC~~eyk~YCi-HG~C~yI~dL~epsCrC~~GYtG 118 (126)
T PHA02887 52 IIKRNFESHI-SKFNYKENANAQNFKRKNSMFFEKCKNDFNDFCI-NGECMNIIDLDEKFCICNKGYTG 118 (126)
T ss_pred eeecccccce-eeeehhccccccchhhccccCccccChHhhCEee-CCEEEccccCCCceeECCCCccc
Confidence 3444445555 444443322 2222334444556753 67777 7899653 4689999999853
No 28
>PF12946 EGF_MSP1_1: MSP1 EGF domain 1; InterPro: IPR024730 This EGF-like domain is found at the C terminus of the malaria parasite MSP1 protein. MSP1 is the merozoite surface protein 1. This domain is part of the C-terminal fragment that is proteolytically processed from the the rest of the protein and is left attached to the surface of the invading parasite [].; PDB: 1N1I_C 2FLG_A 1CEJ_A 2NPR_A 1B9W_A 1OB1_F.
Probab=36.78 E-value=19 Score=21.31 Aligned_cols=26 Identities=31% Similarity=0.658 Sum_probs=16.0
Q ss_pred CCCCCCccccc--CCCceecCCCCceeC
Q 035606 92 ALCGACGVCII--NDLPVCHCLNGFKPK 117 (232)
Q Consensus 92 ~~CG~~g~C~~--~~~~~C~C~~Gf~~~ 117 (232)
..|-.++-|-. +....|.|+.||...
T Consensus 5 ~~cP~NA~C~~~~dG~eecrCllgyk~~ 32 (37)
T PF12946_consen 5 TKCPANAGCFRYDDGSEECRCLLGYKKV 32 (37)
T ss_dssp S---TTEEEEEETTSEEEEEE-TTEEEE
T ss_pred ccCCCCcccEEcCCCCEEEEeeCCcccc
Confidence 45677788843 246789999999763
No 29
>PF14670 FXa_inhibition: Coagulation Factor Xa inhibitory site; PDB: 3Q3K_B 1NFY_B 1LQD_A 1G2L_B 1IQF_L 2UWP_B 2VH6_B 3KQC_L 2P93_L 2BQW_A ....
Probab=34.60 E-value=24 Score=20.63 Aligned_cols=15 Identities=27% Similarity=0.554 Sum_probs=10.5
Q ss_pred CCceecCCCCceeCC
Q 035606 104 DLPVCHCLNGFKPKS 118 (232)
Q Consensus 104 ~~~~C~C~~Gf~~~~ 118 (232)
....|.|++||....
T Consensus 17 g~~~C~C~~Gy~L~~ 31 (36)
T PF14670_consen 17 GSYRCSCPPGYKLAE 31 (36)
T ss_dssp TSEEEE-STTEEE-T
T ss_pred CceEeECCCCCEECc
Confidence 357899999998754
No 30
>KOG4289 consensus Cadherin EGF LAG seven-pass G-type receptor [Signal transduction mechanisms]
Probab=29.34 E-value=35 Score=36.41 Aligned_cols=42 Identities=24% Similarity=0.438 Sum_probs=29.6
Q ss_pred cCCCCCCcccccC-CCceecCCCCceeCCCCCCCCCCCccCCC
Q 035606 91 YALCGACGVCIIN-DLPVCHCLNGFKPKSRGYVDWSQGCVRDK 132 (232)
Q Consensus 91 ~~~CG~~g~C~~~-~~~~C~C~~Gf~~~~~~~~~~s~GC~r~~ 132 (232)
.+.||++|.|... +.-+|+|.|||.-..-+..-.++-|++..
T Consensus 1244 s~pC~nng~C~srEggYtCeCrpg~tGehCEvs~~agrCvpGv 1286 (2531)
T KOG4289|consen 1244 SGPCGNNGRCRSREGGYTCECRPGFTGEHCEVSARAGRCVPGV 1286 (2531)
T ss_pred cCCCCCCCceEEecCceeEEecCCccccceeeecccCccccce
Confidence 7889999999654 45789999999876544333355566543
No 31
>PF06247 Plasmod_Pvs28: Plasmodium ookinete surface protein Pvs28; InterPro: IPR010423 This family consists of several ookinete surface protein (Pvs28) from several species of Plasmodium. Pvs25 and Pvs28 are expressed on the surface of ookinetes. These proteins are potential candidates for vaccine and induce antibodies that block the infectivity of Plasmodium vivax in immunised animals [].; GO: 0009986 cell surface, 0016020 membrane; PDB: 1Z3G_B 1Z1Y_B 1Z27_A.
Probab=24.84 E-value=30 Score=28.28 Aligned_cols=35 Identities=31% Similarity=0.692 Sum_probs=22.0
Q ss_pred cCCCCCc----cCCCCCCcccccCC------CceecCCCCceeCC
Q 035606 84 PRDLCDT----YALCGACGVCIIND------LPVCHCLNGFKPKS 118 (232)
Q Consensus 84 p~~~C~~----~~~CG~~g~C~~~~------~~~C~C~~Gf~~~~ 118 (232)
++..|+. .-.||.|+.|.... .-.|.|.+||....
T Consensus 38 ~kv~C~~~e~~~K~Cgdya~C~~~~~~~~~~~~~C~C~~gY~~~~ 82 (197)
T PF06247_consen 38 EKVECDKLENVNKPCGDYAKCINQANKGEERAYKCDCINGYILKQ 82 (197)
T ss_dssp E----SG-GGTTSEEETTEEEEE-SSTTSSTSEEEEE-TTEEESS
T ss_pred cceecCcccccCccccchhhhhcCCCcccceeEEEecccCceeeC
Confidence 4445654 67799999996432 35799999998864
No 32
>PF14326 DUF4384: Domain of unknown function (DUF4384)
Probab=23.59 E-value=2.1e+02 Score=19.56 Aligned_cols=32 Identities=0% Similarity=-0.021 Sum_probs=22.7
Q ss_pred CCeEEEEEEecCCCcEEEEEEeecCceeEEEEE
Q 035606 38 EDELCYTFDMRDKAAFSRIVMNQTLYLLQRFIW 70 (232)
Q Consensus 38 ~~~~~~~~~~~~~~~~~rl~ld~~G~l~~~~~w 70 (232)
.+.+.+.++.+.+..+..+.+|++|.+ .++.-
T Consensus 6 Ge~v~~~~~~~~~~Yl~l~~~~~~G~v-~~L~P 37 (83)
T PF14326_consen 6 GERVRFRVTSNRDGYLYLFYIDADGKV-TLLFP 37 (83)
T ss_pred CCEEEEEEEeCCCeEEEEEEECCCCCE-EEEec
Confidence 356677777766666777788899988 66653
No 33
>smart00765 MANEC The MANEC domain was formerly called MANSC. This domain, comprising 8 conserved cysteines, is found in the N terminus of higher multicellular animal membrane and extracellular proteins. It is postulated that this domain may play a role in the formation of protein complexes involving various protease activators and inhibitors. It is possible that some of the cysteine residues in the MANSC domain form structurally important disulfide bridges. All of the MANSC-containing proteins contain predicted transmembrane regions and signal peptides. It has been proposed that the MANSC domain in HAI-1 might function through binding with hepatocyte growth factor activator and matriptase.
Probab=21.93 E-value=1.4e+02 Score=21.37 Aligned_cols=34 Identities=18% Similarity=0.455 Sum_probs=23.5
Q ss_pred CChHHHHHHHhcCCCeEEEEeccccCCCcc-eeee
Q 035606 162 MNLNECREKCLENSSCMAYTNSDIRGGGSG-CAMW 195 (232)
Q Consensus 162 ~~~~~C~~~Cl~nCsC~a~~~~~~~~~~~g-C~~w 195 (232)
.+.++|..+|=..=.|..+.+..-..++.+ |+|.
T Consensus 38 ~s~edC~~aCC~~~~CnlAv~e~~~~~~~~~CyLf 72 (93)
T smart00765 38 NTWEDCVRACCSTPNCNLAVFELRREDAEGNCYLF 72 (93)
T ss_pred CCHHHHHHHHcCCCCCcEEEEeccCCCCCCceEEE
Confidence 467899999998888887666421223345 9984
Done!