BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 035609
         (181 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|O78424|YCF19_GUITH Uncharacterized protein ycf19 OS=Guillardia theta GN=ycf19 PE=3
           SV=1
          Length = 91

 Score = 59.7 bits (143), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 25/59 (42%), Positives = 40/59 (67%), Gaps = 1/59 (1%)

Query: 119 LSWFPNIPWDRQPLSAIRDLCDPYLNLFRNIIPPVFDTLDVSPLLAFAVLGTLGSILNN 177
           L+WFPN+ W  QP  ++  + DPYL +FR I+PP+   +D+SP+L F +L  +  I++N
Sbjct: 29  LTWFPNVNWYGQPFYSLSRITDPYLKMFRGIVPPLIG-IDISPILGFILLQCIMQIVSN 86


>sp|Q1XDD4|YCF19_PORYE Uncharacterized protein ycf19 OS=Porphyra yezoensis GN=ycf19 PE=3
           SV=1
          Length = 95

 Score = 56.2 bits (134), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 26/60 (43%), Positives = 36/60 (60%), Gaps = 1/60 (1%)

Query: 120 SWFPNIPWDRQPLSAIRDLCDPYLNLFRNIIPPVFDTLDVSPLLAFAVLGTLGSILNNSR 179
           +WFP + W  +P  ++  + DPYL LFR  IPP+F  +D+SP+L    L  L  I NN R
Sbjct: 33  AWFPTVNWYNEPFCSLNRITDPYLKLFRGSIPPMFG-MDMSPMLGIIFLQCLMVIFNNVR 91


>sp|P51353|YCF19_PORPU Uncharacterized protein ycf19 OS=Porphyra purpurea GN=ycf19 PE=3
           SV=1
          Length = 95

 Score = 56.2 bits (134), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 26/60 (43%), Positives = 36/60 (60%), Gaps = 1/60 (1%)

Query: 120 SWFPNIPWDRQPLSAIRDLCDPYLNLFRNIIPPVFDTLDVSPLLAFAVLGTLGSILNNSR 179
           +WFP + W  +P  ++  + DPYL LFR  IPP+F  +D+SP+L    L  L  I NN R
Sbjct: 33  AWFPTVNWYNEPFCSLNRITDPYLKLFRGSIPPMFG-MDMSPMLGIIFLQCLMVIFNNVR 91


>sp|Q9TM45|YCF19_CYACA Uncharacterized protein ycf19 OS=Cyanidium caldarium GN=ycf19 PE=3
           SV=1
          Length = 91

 Score = 48.5 bits (114), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 23/60 (38%), Positives = 34/60 (56%), Gaps = 1/60 (1%)

Query: 119 LSWFPNIPWDRQPLSAIRDLCDPYLNLFRNIIPPVFDTLDVSPLLAFAVLGTLGSILNNS 178
           L WFPNI W  QP  ++  L DPYLNLF  + P  F  +D SP++   ++  +  +L+  
Sbjct: 29  LGWFPNINWYSQPFYSLSQLSDPYLNLFHGVFPS-FLGIDFSPIIGITLIDFIIELLSRQ 87


>sp|P28255|YCF19_GALSU Uncharacterized protein ycf19 OS=Galdieria sulphuraria GN=ycf19
           PE=3 SV=1
          Length = 98

 Score = 45.1 bits (105), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 23/61 (37%), Positives = 33/61 (54%), Gaps = 1/61 (1%)

Query: 117 VLLSWFPNIPWDRQPLSAIRDLCDPYLNLFRNIIPPVFDTLDVSPLLAFAVLGTLGSILN 176
           V L+W   I W  QP   ++ L DPYLNLFR  +P +   +D S +L F  L  +  +L 
Sbjct: 32  VFLAWIVTINWYTQPYIVLKKLTDPYLNLFRGTLPLILG-MDFSSMLGFLFLECVIKLLE 90

Query: 177 N 177
           +
Sbjct: 91  S 91


>sp|O31729|YLMG_BACSU Uncharacterized membrane protein YlmG OS=Bacillus subtilis (strain
           168) GN=ylmG PE=3 SV=1
          Length = 90

 Score = 38.5 bits (88), Expect = 0.025,   Method: Compositional matrix adjust.
 Identities = 21/54 (38%), Positives = 32/54 (59%), Gaps = 6/54 (11%)

Query: 117 VLLSWFPNIPWDRQPLSA--IRDLCDPYLNLFRNIIPPVFDTLDVSPLLAFAVL 168
           + +SW P+    R+      +  +C+PYL  FR IIPP+   LD+SP++A  VL
Sbjct: 25  IFMSWVPS---TRETAVGRFLASICEPYLEPFRKIIPPI-AMLDISPIVAILVL 74


>sp|P23849|TRKG_ECOLI Trk system potassium uptake protein TrkG OS=Escherichia coli
           (strain K12) GN=trkG PE=1 SV=1
          Length = 485

 Score = 29.6 bits (65), Expect = 9.9,   Method: Compositional matrix adjust.
 Identities = 26/82 (31%), Positives = 37/82 (45%), Gaps = 6/82 (7%)

Query: 25  PFKPSKMVTPTPLLADSTRTFSTIFSLSGLFIKSLIQNLAPTLNKSSLHCNIVHTVGPAF 84
           PFK  K+   TP LAD++RT    +SL G  I  ++      +      C+ + TV    
Sbjct: 171 PFKDDKL---TPRLADTSRTLWITYSLLG--IACIVCYRLAGMPLFDAICHGISTVSLGG 225

Query: 85  FARMRERPSGYLNTPLTVVAAG 106
           F+   E   GY N  L  + AG
Sbjct: 226 FSTHSESI-GYFNNYLVELVAG 246


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.320    0.133    0.400 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 64,123,585
Number of Sequences: 539616
Number of extensions: 2591589
Number of successful extensions: 26203
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 179
Number of HSP's successfully gapped in prelim test: 47
Number of HSP's that attempted gapping in prelim test: 20068
Number of HSP's gapped (non-prelim): 3996
length of query: 181
length of database: 191,569,459
effective HSP length: 110
effective length of query: 71
effective length of database: 132,211,699
effective search space: 9387030629
effective search space used: 9387030629
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 57 (26.6 bits)