Query 035609
Match_columns 181
No_of_seqs 185 out of 1109
Neff 4.1
Searched_HMMs 29240
Date Mon Mar 25 07:03:35 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/035609.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/035609hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1lsh_B Lipovitellin (LV-2); vi 49.7 3.5 0.00012 36.1 0.0 8 12-19 30-37 (319)
2 2kv5_A FST, putative uncharact 4.4 6.4E+02 0.022 15.1 2.6 19 159-177 9-27 (33)
3 3ut4_A CTHE_2751, putative unc 4.1 7E+02 0.024 19.0 3.3 33 118-150 36-70 (134)
4 4fye_A SIDF, inhibitor of grow 4.1 6.7E+02 0.023 23.2 3.6 32 129-161 439-470 (761)
5 3j1r_A Archaeal adhesion filam 4.1 3.7E+02 0.013 15.4 1.2 13 160-172 2-14 (26)
6 4gip_A Fusion glycoprotein F2; 3.9 7.7E+02 0.026 17.5 3.1 28 38-65 50-77 (81)
7 1gtk_A Porphobilinogen deamina 3.7 3.5E+02 0.012 23.5 1.3 46 51-96 58-108 (313)
8 1aym_4 HRV16, human rhinovirus 3.3 2.5E+02 0.0086 19.5 0.0 19 135-153 49-67 (68)
9 1qmy_A Protease, leader protea 3.2 9E+02 0.031 19.2 3.2 33 107-140 25-60 (167)
10 3ecr_A Porphobilinogen deamina 3.0 4.6E+02 0.016 23.4 1.4 44 53-96 78-126 (364)
No 1
>1lsh_B Lipovitellin (LV-2); vitellogenin, lipoprotein, plasma apolipoprote apolipoprotein B, APOB; HET: PLD UPL; 1.90A {Ichthyomyzon unicuspis} SCOP: f.7.1.1
Probab=49.69 E-value=3.5 Score=36.07 Aligned_cols=8 Identities=75% Similarity=0.247 Sum_probs=0.0
Q ss_pred cccCCCcc
Q 035609 12 FSSSSSSF 19 (181)
Q Consensus 12 ~~~~~~~~ 19 (181)
.+++++||
T Consensus 30 ~~~~~~~~ 37 (319)
T 1lsh_B 30 SSSSSSSD 37 (319)
T ss_dssp --------
T ss_pred ccccccch
Confidence 33344444
No 2
>2kv5_A FST, putative uncharacterized protein RNAI; toxin-antitoxin, bacterial, toxin; NMR {Enterococcus faecalis}
Probab=4.42 E-value=6.4e+02 Score=15.14 Aligned_cols=19 Identities=21% Similarity=0.518 Sum_probs=14.5
Q ss_pred hHHHHHHHHHHHHHHHHhh
Q 035609 159 VSPLLAFAVLGTLGSILNN 177 (181)
Q Consensus 159 fSPLVa~llL~lL~~lL~~ 177 (181)
++|+++-+++.++...|..
T Consensus 9 IaPivVGvvl~L~d~WLn~ 27 (33)
T 2kv5_A 9 IAPIFVGLVLEMISRVLDE 27 (33)
T ss_dssp HHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHHcc
Confidence 5788888888888776654
No 3
>3ut4_A CTHE_2751, putative uncharacterized protein; non PFAM singleton, helical fold, unknown function; 2.03A {Clostridium thermocellum} PDB: 3ut8_A 3ut7_A
Probab=4.13 E-value=7e+02 Score=18.97 Aligned_cols=33 Identities=18% Similarity=0.388 Sum_probs=24.1
Q ss_pred hhhcccCCCCC--chHHHHHHHhhhHHHHHhhhhC
Q 035609 118 LLSWFPNIPWD--RQPLSAIRDLCDPYLNLFRNII 150 (181)
Q Consensus 118 LLSW~p~~~~~--npI~~~L~~LTEP~L~PfRRiI 150 (181)
++.|++-.+|- ..+...+.+.-+.++.++++++
T Consensus 36 LL~WLQD~NWPvA~~i~~~L~~~~~~l~p~I~~vl 70 (134)
T 3ut4_A 36 LLKWLQDYNWPIAKDILPVVVLHQSIAMPHILTIL 70 (134)
T ss_dssp HHGGGSCTTSTTHHHHHHHHHHTHHHHHHHHHHHH
T ss_pred HHHHHhcCCCccHHHHHHHHHHccHhhHHHHHHHH
Confidence 88999877773 2566666677777777777766
No 4
>4fye_A SIDF, inhibitor of growth family, member 3; mixed alpha-beta, phosphatase, phosphoinositides, membrane,; 2.41A {Legionella pneumophila subsp} PDB: 4fyf_A 4fyg_A*
Probab=4.10 E-value=6.7e+02 Score=23.24 Aligned_cols=32 Identities=9% Similarity=0.170 Sum_probs=26.8
Q ss_pred chHHHHHHHhhhHHHHHhhhhCCCCCCCcChHH
Q 035609 129 RQPLSAIRDLCDPYLNLFRNIIPPVFDTLDVSP 161 (181)
Q Consensus 129 npI~~~L~~LTEP~L~PfRRiIPpi~GgIDfSP 161 (181)
|+-.+|+.++||-+++-+.|+--.+ |..|=+-
T Consensus 439 nqnarfvnqmtddvirnldkvaqnl-gdydkag 470 (761)
T 4fye_A 439 NQNARFVNQMTDDVIRNLDKVAQNL-GDYDKAG 470 (761)
T ss_dssp HHHHHHHHHHHHHHHHHHHHSSTTC-SSCHHHH
T ss_pred ccchHHHHhhhHHHHHHHHHHHHhc-ccccccc
Confidence 3568999999999999999998887 7777554
No 5
>3j1r_A Archaeal adhesion filament core; helical polymer, flagellar filament, cell adhesion, structur protein; 7.50A {Ignicoccus hospitalis}
Probab=4.08 E-value=3.7e+02 Score=15.44 Aligned_cols=13 Identities=31% Similarity=0.429 Sum_probs=8.2
Q ss_pred HHHHHHHHHHHHH
Q 035609 160 SPLLAFAVLGTLG 172 (181)
Q Consensus 160 SPLVa~llL~lL~ 172 (181)
||+++.++|.++.
T Consensus 2 spiVA~~lLIvia 14 (26)
T 3j1r_A 2 SPVIATLLLILIA 14 (26)
T ss_dssp CHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHH
Confidence 5777766665543
No 6
>4gip_A Fusion glycoprotein F2; PIV5, viral fusion protein, membrane fusion, protease cleava activated form, ectodomain, trimer; HET: NAG; 2.00A {Simian virus 5}
Probab=3.92 E-value=7.7e+02 Score=17.50 Aligned_cols=28 Identities=14% Similarity=0.315 Sum_probs=22.3
Q ss_pred CCCchhhHHHHHHHHHHHHHHHHHhhcc
Q 035609 38 LADSTRTFSTIFSLSGLFIKSLIQNLAP 65 (181)
Q Consensus 38 ~~~s~r~~~~~~~~~~~~~~~~~~~~~~ 65 (181)
...=.||++|++-=-++.+++|+....|
T Consensus 50 v~~Ynktlt~lL~Pi~daL~~I~~~~~~ 77 (81)
T 4gip_A 50 ISSYNATVTKLLQPIGENLETIRNQLIP 77 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHCEE
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccCCc
Confidence 4444689999999899999999877664
No 7
>1gtk_A Porphobilinogen deaminase; lyase, biosynthesis of linear tetrapyrrole, all alpha/beta; HET: DPM; 1.66A {Escherichia coli} SCOP: c.94.1.1 d.50.2.1 PDB: 1ah5_A* 2ypn_A* 1ypn_A* 1pda_A*
Probab=3.71 E-value=3.5e+02 Score=23.49 Aligned_cols=46 Identities=24% Similarity=0.225 Sum_probs=30.1
Q ss_pred HHHHHHHHHHHhhccc---ccccccccccccccCceeeecc--ccCCCccc
Q 035609 51 LSGLFIKSLIQNLAPT---LNKSSLHCNIVHTVGPAFFARM--RERPSGYL 96 (181)
Q Consensus 51 ~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~l~~a~~--~~~~~~~l 96 (181)
--++|+|.|.+.++-. +|+.+++.--..--..|..|++ |++|++.+
T Consensus 58 gkGlFtkELe~aLl~g~iDiAVHSlKDvPt~lp~gl~l~av~~RedprDal 108 (313)
T 1gtk_A 58 GKGLFVKELEVALLENRADIAVHSMKDVPVEFPQGLGLVTICEREDPRDAF 108 (313)
T ss_dssp --CTTHHHHHHHHHTTSCSEEEEEGGGSCSCCCTTEEEEEECCCCCCCEEE
T ss_pred CccchHHHHHHHHHcCCCcEEEecCCCCCCCCCCCcEEEEEecCCCcceEE
Confidence 3578999998888754 6666666543344556777775 77777643
No 8
>1aym_4 HRV16, human rhinovirus 16 coat protein; RNA, site-directed mutagenesis, icosahedral virus; HET: MYR DAO; 2.15A {Human rhinovirus SP} SCOP: b.121.4.1 PDB: 1ayn_4* 1d3e_4 1ncr_D* 1nd2_D* 1qju_4* 1qjx_4* 1qjy_4* 1nd3_D* 1fpn_4* 1v9u_4* 3dpr_D* 1r1a_4* 2hwd_4* 2hwe_4* 2hwf_4*
Probab=3.28 E-value=2.5e+02 Score=19.49 Aligned_cols=19 Identities=21% Similarity=0.431 Sum_probs=0.0
Q ss_pred HHHhhhHHHHHhhhhCCCC
Q 035609 135 IRDLCDPYLNLFRNIIPPV 153 (181)
Q Consensus 135 L~~LTEP~L~PfRRiIPpi 153 (181)
=.+.|||+..-+.+-+|++
T Consensus 49 PsKFT~Pv~dv~~~~~p~L 67 (68)
T 1aym_4 49 PSKFTDPVKDVLEKGIPTL 67 (68)
T ss_dssp -------------------
T ss_pred chhhcchHHHHHhcccccc
Confidence 3678999998888877764
No 9
>1qmy_A Protease, leader protease; hydrolase, sulfhydryl proteinase, picornaviral proteinase; 1.9A {Aphthovirus O} SCOP: d.3.1.2 PDB: 1qol_A 2jqf_R 2jqg_R
Probab=3.21 E-value=9e+02 Score=19.25 Aligned_cols=33 Identities=24% Similarity=0.435 Sum_probs=20.4
Q ss_pred HHHHHHHHhhh---hhhcccCCCCCchHHHHHHHhhh
Q 035609 107 MAKWLDIYSGV---LLSWFPNIPWDRQPLSAIRDLCD 140 (181)
Q Consensus 107 L~~lI~LY~~v---LLSW~p~~~~~npI~~~L~~LTE 140 (181)
++.+++++-++ +..|.- .+..|--.+.|.+++|
T Consensus 25 LNtilQLfryvdepfFd~~y-~spenlt~~~I~ql~e 60 (167)
T 1qmy_A 25 LNAILQLFRYVEEPFFDWVY-SSPENLTLEAIKQLED 60 (167)
T ss_dssp HHHHHHHHHHHTCCTTHHHH-TCSSCCHHHHHHHHHH
T ss_pred HHHHHHHHHHcCccchhhcc-CChhhhhHHHHHHHHH
Confidence 45556677777 888874 3334555566666655
No 10
>3ecr_A Porphobilinogen deaminase; heme biosynthesis, porphobilinogen hinge, alternative splicing, cytoplasm, disease mutation, porphyrin biosynthesis; HET: DPM; 2.18A {Homo sapiens} PDB: 3eq1_A*
Probab=3.01 E-value=4.6e+02 Score=23.35 Aligned_cols=44 Identities=25% Similarity=0.187 Sum_probs=0.0
Q ss_pred HHHHHHHHHhhccc---ccccccccccccccCceeeecc--ccCCCccc
Q 035609 53 GLFIKSLIQNLAPT---LNKSSLHCNIVHTVGPAFFARM--RERPSGYL 96 (181)
Q Consensus 53 ~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~l~~a~~--~~~~~~~l 96 (181)
++|+|.|.+.++-. +|+.+++.--..--..|..|++ |++|++.+
T Consensus 78 GlFtkELe~ALl~g~iDiAVHSlKDvPt~lp~gl~l~av~~ReDprDal 126 (364)
T 3ecr_A 78 SLFTKELEHALEKNEVDLVVHSLKDLPTVLPPGFTIGAICKRENPHDAV 126 (364)
T ss_dssp -CCHHHHHHHHHTTSCSEEEEEGGGSCSSCCTTEEEEEECCCCCCCEEE
T ss_pred eeeHHHHHHHHhcCCCCEEEECcccCCCCCCCCcEEEEEcCCCCcceEE
Done!