Query 035609
Match_columns 181
No_of_seqs 185 out of 1109
Neff 4.1
Searched_HMMs 13730
Date Mon Mar 25 07:03:45 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/035609.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/035609hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1qmya_ d.3.1.2 (A:) FMDV lead 4.5 2.9E+02 0.021 20.0 3.2 33 107-140 25-60 (156)
2 d1pdaa1 c.94.1.1 (A:3-219) Por 2.9 1.8E+02 0.013 21.9 0.8 43 52-94 57-104 (217)
3 d1gjja2 a.140.1.1 (A:111-153) 2.8 2.6E+02 0.019 16.1 1.2 12 34-45 20-31 (43)
4 d1yuaa1 g.41.3.3 (A:1-65) Prok 2.6 2.3E+02 0.017 17.9 0.9 16 72-87 25-40 (65)
5 d1wxia1 c.26.2.1 (A:2-275) NH3 2.6 2.9E+02 0.021 20.8 1.7 41 131-172 18-64 (274)
6 d1xd7a_ a.4.5.55 (A:) Hypothet 2.4 3.9E+02 0.028 17.1 2.0 24 41-64 20-43 (127)
7 d1hw1a1 a.4.5.6 (A:5-78) Fatty 2.2 4.8E+02 0.035 15.5 2.1 26 39-64 27-52 (74)
8 d1kqpa_ c.26.2.1 (A:) NH3-depe 2.1 4.6E+02 0.033 19.6 2.2 42 131-173 18-64 (271)
9 d3brja1 a.285.1.1 (A:6-172) Ma 2.1 4.9E+02 0.036 18.8 2.2 48 40-87 13-63 (167)
10 d1k78a1 a.4.1.5 (A:19-81) Pax- 2.0 5.1E+02 0.037 15.6 1.9 24 40-63 31-54 (63)
No 1
>d1qmya_ d.3.1.2 (A:) FMDV leader protease {Foot-and-mouth disease virus [TaxId: 12110]}
Probab=4.47 E-value=2.9e+02 Score=20.05 Aligned_cols=33 Identities=24% Similarity=0.435 Sum_probs=22.1
Q ss_pred HHHHHHHHhhh---hhhcccCCCCCchHHHHHHHhhh
Q 035609 107 MAKWLDIYSGV---LLSWFPNIPWDRQPLSAIRDLCD 140 (181)
Q Consensus 107 L~~lI~LY~~v---LLSW~p~~~~~npI~~~L~~LTE 140 (181)
++.+++++-++ +..|.- .+..|-..+.|.+++|
T Consensus 25 LN~ilQLfryv~epfFd~~y-~spenlt~~~I~~l~e 60 (156)
T d1qmya_ 25 LNAILQLFRYVEEPFFDWVY-SSPENLTLEAIKQLED 60 (156)
T ss_dssp HHHHHHHHHHHTCCTTHHHH-TCSSCCHHHHHHHHHH
T ss_pred HHHHHHHHHHcCccchhhcc-CChhhhhHHHHHHHHh
Confidence 44555677777 888884 3445667777777776
No 2
>d1pdaa1 c.94.1.1 (A:3-219) Porphobilinogen deaminase (hydroxymethylbilane synthase), N-terminal domain {Escherichia coli [TaxId: 562]}
Probab=2.92 E-value=1.8e+02 Score=21.88 Aligned_cols=43 Identities=26% Similarity=0.276 Sum_probs=29.0
Q ss_pred HHHHHHHHHHhhccc---ccccccccccccccCceeeecc--ccCCCc
Q 035609 52 SGLFIKSLIQNLAPT---LNKSSLHCNIVHTVGPAFFARM--RERPSG 94 (181)
Q Consensus 52 ~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~l~~a~~--~~~~~~ 94 (181)
-++|++.|.+.++-+ +|+.+.+.--..-...+..+++ |++|++
T Consensus 57 kg~Ftkele~~Ll~~~iDiAVHS~KDlP~~~~~~l~i~a~~~R~d~rD 104 (217)
T d1pdaa1 57 KGLFVKELEVALLENRADIAVHSMKDVPVEFPQGLGLVTICEREDPRD 104 (217)
T ss_dssp CCTTTHHHHHHHHTTSCSEEEEEGGGSCSCCCTTEEEEEECCCCCCCE
T ss_pred hHHHHHHHHHHHHcCccceehhhhcccccccCCccccccccccCCcch
Confidence 467999998888855 6777766644445556666664 666665
No 3
>d1gjja2 a.140.1.1 (A:111-153) Thymopoietin, LAP2 {Human (Homo sapiens) [TaxId: 9606]}
Probab=2.83 E-value=2.6e+02 Score=16.11 Aligned_cols=12 Identities=17% Similarity=0.254 Sum_probs=8.2
Q ss_pred CCCCCCCchhhH
Q 035609 34 PTPLLADSTRTF 45 (181)
Q Consensus 34 ~~~~~~~s~r~~ 45 (181)
+.-+.|+|||-|
T Consensus 20 ~~GPIt~sTR~v 31 (43)
T d1gjja2 20 NPGPIVGTTRKL 31 (43)
T ss_dssp CCCCCCSSEHHH
T ss_pred CCCCcCcchHHH
Confidence 334578899964
No 4
>d1yuaa1 g.41.3.3 (A:1-65) Prokaryotic DNA topoisomerase I, a C-terminal fragment {Escherichia coli [TaxId: 562]}
Probab=2.64 E-value=2.3e+02 Score=17.86 Aligned_cols=16 Identities=13% Similarity=0.077 Sum_probs=12.8
Q ss_pred cccccccccCceeeec
Q 035609 72 LHCNIVHTVGPAFFAR 87 (181)
Q Consensus 72 ~~~~~~~~~~~l~~a~ 87 (181)
+.-.+++++..||+||
T Consensus 25 d~yvLRDga~GlFlAA 40 (65)
T d1yuaa1 25 AYFVLRDGAAGVFLAA 40 (65)
T ss_dssp CEEEEECCSSSCEEEE
T ss_pred cEEEeeccccceeeec
Confidence 3346788999999988
No 5
>d1wxia1 c.26.2.1 (A:2-275) NH3-dependent NAD+-synthetase {Escherichia coli [TaxId: 562]}
Probab=2.60 E-value=2.9e+02 Score=20.84 Aligned_cols=41 Identities=15% Similarity=0.099 Sum_probs=25.9
Q ss_pred HHHHHHHhhhHHHHHhhh------hCCCCCCCcChHHHHHHHHHHHHH
Q 035609 131 PLSAIRDLCDPYLNLFRN------IIPPVFDTLDVSPLLAFAVLGTLG 172 (181)
Q Consensus 131 I~~~L~~LTEP~L~PfRR------iIPpi~GgIDfSPLVa~llL~lL~ 172 (181)
.-+.+.++++.+=+-+++ ++=.+-||+| |.+++.++-..+.
T Consensus 18 ~ee~i~~~v~~L~dy~~k~~~~k~vVvGlSGGID-Sav~A~L~~~Alg 64 (274)
T d1wxia1 18 AEEEIRRSVDFLKSYLQTYPFIKSLVLGISGGQD-STLAGKLCQMAIN 64 (274)
T ss_dssp HHHHHHHHHHHHHHHHHHSTTCCEEEEECCSSHH-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHcCCCCeEEEECCCCHH-HHHHHHHHHHHHH
Confidence 355677777766666654 2212237999 7777877766654
No 6
>d1xd7a_ a.4.5.55 (A:) Hypothetical protein ywnA {Bacillus subtilis [TaxId: 1423]}
Probab=2.39 E-value=3.9e+02 Score=17.11 Aligned_cols=24 Identities=13% Similarity=0.250 Sum_probs=20.2
Q ss_pred chhhHHHHHHHHHHHHHHHHHhhc
Q 035609 41 STRTFSTIFSLSGLFIKSLIQNLA 64 (181)
Q Consensus 41 s~r~~~~~~~~~~~~~~~~~~~~~ 64 (181)
|.++++.-..+...+++||.+++-
T Consensus 20 ss~~IA~~~~~~~~~v~kIl~~L~ 43 (127)
T d1xd7a_ 20 SSEIIADSVNTNPVVVRRMISLLK 43 (127)
T ss_dssp CHHHHHHHHTSCHHHHHHHHHHHH
T ss_pred CHHHHHHHhCcCHHHHHHHHHHHH
Confidence 467888889999999999888776
No 7
>d1hw1a1 a.4.5.6 (A:5-78) Fatty acid responsive transcription factor FadR, N-terminal domain {Escherichia coli [TaxId: 562]}
Probab=2.16 E-value=4.8e+02 Score=15.49 Aligned_cols=26 Identities=19% Similarity=0.392 Sum_probs=21.2
Q ss_pred CCchhhHHHHHHHHHHHHHHHHHhhc
Q 035609 39 ADSTRTFSTIFSLSGLFIKSLIQNLA 64 (181)
Q Consensus 39 ~~s~r~~~~~~~~~~~~~~~~~~~~~ 64 (181)
-+|.|.++..+.+++.-+++.-+.+-
T Consensus 27 LPs~~eLa~~~~vSr~tvr~Al~~L~ 52 (74)
T d1hw1a1 27 LPAERELSELIGVTRTTLREVLQRLA 52 (74)
T ss_dssp CCCHHHHHHHHTCCHHHHHHHHHHHH
T ss_pred CccHHHHHHHHCCCHHHHHHHHHHHH
Confidence 37899999999999988888766554
No 8
>d1kqpa_ c.26.2.1 (A:) NH3-dependent NAD+-synthetase {Bacillus subtilis [TaxId: 1423]}
Probab=2.07 E-value=4.6e+02 Score=19.55 Aligned_cols=42 Identities=17% Similarity=0.120 Sum_probs=25.1
Q ss_pred HHHHHHHhhhHHHHHhhh-----hCCCCCCCcChHHHHHHHHHHHHHH
Q 035609 131 PLSAIRDLCDPYLNLFRN-----IIPPVFDTLDVSPLLAFAVLGTLGS 173 (181)
Q Consensus 131 I~~~L~~LTEP~L~PfRR-----iIPpi~GgIDfSPLVa~llL~lL~~ 173 (181)
.-+.+..+++++-+-+|| ++=.+-||+| |.+++.++-..+..
T Consensus 18 ~~e~i~~~v~~lrdy~~ksg~~gvvvglSGGID-SAv~a~L~~~A~~~ 64 (271)
T d1kqpa_ 18 PKQEIEDRVNFLKQYVKKTGAKGFVLGISGGQD-STLAGRLAQLAVES 64 (271)
T ss_dssp HHHHHHHHHHHHHHHHHHHTCCEEEEECCSSHH-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhCCCeEEEECCCCHH-HHHHHHHHHHHHHH
Confidence 355667777776666654 2212237999 56776666555543
No 9
>d3brja1 a.285.1.1 (A:6-172) Mannitol operon repressor MtlR {Vibrio parahaemolyticus [TaxId: 670]}
Probab=2.06 E-value=4.9e+02 Score=18.79 Aligned_cols=48 Identities=21% Similarity=0.168 Sum_probs=25.6
Q ss_pred CchhhHHHH-HHHHHHHHHHHHHhhccc--ccccccccccccccCceeeec
Q 035609 40 DSTRTFSTI-FSLSGLFIKSLIQNLAPT--LNKSSLHCNIVHTVGPAFFAR 87 (181)
Q Consensus 40 ~s~r~~~~~-~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~l~~a~ 87 (181)
+|-|..-.. +++--..+.++.++++-+ -|++.--..+..+.|||-.-+
T Consensus 13 ~s~rgf~~~a~~il~~~l~~Ll~~vF~kdd~avk~aV~pLl~~~GPLg~~s 63 (167)
T d3brja1 13 PSVRGFFIATVDVFNESIDGLIQRIFRKDNFAVQSVVGPLLQDSGPLGDLS 63 (167)
T ss_dssp CSHHHHHHHHHHHHHHHHHHHHHHHSCCCCHHHHHHHHHHHSTTSTTCSHH
T ss_pred CchhHHHHHHHHHHHHHHHHHHHHHHcchHHHHHHHHHHHhcCCCCchhHH
Confidence 345554433 555566666666666522 233332335667888875533
No 10
>d1k78a1 a.4.1.5 (A:19-81) Pax-5 {Human (Homo sapiens) [TaxId: 9606]}
Probab=2.00 E-value=5.1e+02 Score=15.57 Aligned_cols=24 Identities=8% Similarity=0.048 Sum_probs=18.6
Q ss_pred CchhhHHHHHHHHHHHHHHHHHhh
Q 035609 40 DSTRTFSTIFSLSGLFIKSLIQNL 63 (181)
Q Consensus 40 ~s~r~~~~~~~~~~~~~~~~~~~~ 63 (181)
-|.|.+++.+.++.-++.++.+++
T Consensus 31 ~s~r~aA~rf~VS~s~v~k~l~r~ 54 (63)
T d1k78a1 31 VRPCDISRQLRVSHGCVSKILGRY 54 (63)
T ss_dssp CCHHHHHHHHTCCHHHHHHHHHHH
T ss_pred CCHHHHHHHhCCCHHHHHHHHHHH
Confidence 367888888888888888876654
Done!